RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11415
         (70 letters)



>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus
           scrofa) [TaxId: 9823]}
          Length = 195

 Score =  104 bits (261), Expect = 6e-31
 Identities = 64/69 (92%), Positives = 67/69 (97%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           MVKCDPRHGKYMACC+LYRGDVVPKDVN+AIATIKTKRTIQFVDWCPTGFKVGINY+PPT
Sbjct: 57  MVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPT 116

Query: 61  VVPGGDLRH 69
           VVPGGDL  
Sbjct: 117 VVPGGDLAK 125


>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 184

 Score = 83.5 bits (206), Expect = 7e-23
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
           M  CDPRHG+Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP 
Sbjct: 57  MAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR 116

Query: 61  VVP 63
            + 
Sbjct: 117 GLK 119


>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter
           dejongeii [TaxId: 48465]}
          Length = 180

 Score = 67.3 bits (164), Expect = 1e-16
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPT 60
              C P  G++++  +LYRG +  K +  A A    +  +    W PT FK+G   QP  
Sbjct: 54  FAACSPMEGRFLSTAVLYRGIMEDKPLADA-ALAAMREKLPLTYWIPTAFKIGYVEQPGI 112

Query: 61  VVP 63
              
Sbjct: 113 SHR 115


>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus
           thermophilus [TaxId: 274]}
          Length = 156

 Score = 23.3 bits (49), Expect = 3.2
 Identities = 8/63 (12%), Positives = 20/63 (31%)

Query: 4   CDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP 63
            +  +                 + +  +A    ++ + ++D   +G   G      TV+ 
Sbjct: 72  AEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVML 131

Query: 64  GGD 66
           GG 
Sbjct: 132 GGP 134


>d1mkpa_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pyst1
           (mkp3) [TaxId: 9606]}
          Length = 144

 Score = 22.4 bits (47), Expect = 5.4
 Identities = 6/40 (15%), Positives = 15/40 (37%)

Query: 1   MVKCDPRHGKYMACCMLYRGDVVPKDVNSAIATIKTKRTI 40
           +V       + +   + Y    +   +N A   +K K++ 
Sbjct: 87  LVHSLAGISRSVTVTVAYLMQKLNLSMNDAYDIVKMKKSN 126


>d1tvfa1 b.105.1.2 (A:316-383) Pencillin binding protein 4 (PbpD),
          C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
          Length = 68

 Score = 21.8 bits (46), Expect = 7.6
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 21 DVVPKDVNSAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV 61
          DV+P D +     +  +      D+ P  F    +Y PPTV
Sbjct: 26 DVLPSDFSKKDYKLVVEDGKVHADY-PREFINK-DYGPPTV 64


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.143    0.485 

Gapped
Lambda     K      H
   0.267   0.0678    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 288,833
Number of extensions: 10194
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 8
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.0 bits)