BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11416
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|B Chain B, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|C Chain C, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
pdb|4E1J|D Chain D, Crystal Structure Of Glycerol Kinase In Complex With
Glycerol From Sinorhizobium Meliloti 1021
Length = 520
Score = 32.3 bits (72), Expect = 0.13, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 44 QDKGLMELCQRLPVEFMHAVIHARALRKAFISIKGFYFQAEFKGQKITWIIPHLYGHQAH 103
QD+ C +L + L K F+ G F G K+ W++ ++ G Q
Sbjct: 126 QDRRTAAFCDKL---------KKKGLEKTFVKKTGLLLDPYFSGTKLNWLLSNVKGAQVR 176
Query: 104 SNMLIMCF 111
+ +CF
Sbjct: 177 AAKGELCF 184
>pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
pdb|2DPN|B Chain B, Crystal Structure Of The Glycerol Kinase From Thermus
Thermophilus Hb8
Length = 495
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 44 QDKGLMELCQRLPVEFMHAVIHARALRKAFISIKGFYFQAEFKGQKITWIIPHLYGHQAH 103
QD+ LC+ L A+ L F G F F G K+ W++ ++ G +A
Sbjct: 102 QDRRTTPLCEAL---------RAKGLEPLFRERTGLLFDPYFSGTKLVWLLENVPGLKAR 152
Query: 104 SNMLIMCF 111
+ + F
Sbjct: 153 AEGGGVAF 160
>pdb|2EEQ|A Chain A, Mutant Y29m Structure Of Ph0725 From Pyrococcus Horikoshii
Ot3
pdb|2EEQ|B Chain B, Mutant Y29m Structure Of Ph0725 From Pyrococcus Horikoshii
Ot3
Length = 265
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 107 LIMCFLFPQPYDKKQIDIRTM-------LTFAEFYTSLL-GFTLYRL 145
+++ F+ YD++ I ++ + + FAEFYTSL+ G TL R+
Sbjct: 1 MVLYFIGLGLYDERDITVKGLEIAKKCDMVFAEFYTSLMAGTTLGRI 47
>pdb|2P6D|A Chain A, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
pdb|2P6D|B Chain B, Crystal Structure Of Ph0725 From Pyrococcus Horikoshii Ot3
Length = 265
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 107 LIMCFLFPQPYDKKQIDIRTML-------TFAEFYTSLL-GFTLYRL 145
+++ F+ YD++ I ++ ++ FAEFYTSL+ G TL R+
Sbjct: 1 MVLYFIGLGLYDERDITVKGLMIAKKCDYVFAEFYTSLMAGTTLGRI 47
>pdb|2EL0|A Chain A, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (L21m)
pdb|2EL0|B Chain B, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (L21m)
Length = 265
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
Query: 107 LIMCFLFPQPYDKKQIDIRTM-------LTFAEFYTSLL-GFTLYRL 145
+++ F+ YD++ I ++ M FAEFYTSL+ G TL R+
Sbjct: 1 MVLYFIGLGLYDERDITVKGMEIAKKCDYVFAEFYTSLMAGTTLGRI 47
>pdb|2EK3|A Chain A, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (L3m)
pdb|2EK3|B Chain B, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (L3m)
Length = 265
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
Query: 107 LIMCFLFPQPYDKKQIDIRTM-------LTFAEFYTSLL-GFTLYRL 145
++M F+ YD++ I ++ + FAEFYTSL+ G TL R+
Sbjct: 1 MVMYFIGLGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRI 47
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 130 FAEFYTSLLGFTLYRLYHTLNLA--YPP 155
FAEF T G TLYR+ HT ++ PP
Sbjct: 181 FAEFLTVQTGGTLYRITHTNDIVPRLPP 208
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 130 FAEFYTSLLGFTLYRLYHTLNLA--YPP 155
FAEF T G TLYR+ HT ++ PP
Sbjct: 181 FAEFLTVQTGGTLYRITHTNDIVPRLPP 208
>pdb|2AN2|A Chain A, P332g, A333s Double Mutant Of The Bacillus Subtilis Nitric
Oxide Synthase
Length = 360
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 42 LGQDKGLMELCQRLPVEFMHAVIHARALRKAFISIKGFYFQAEFKGQKIT----WIIPHL 97
L +D+ L+EL + + + + A K F Q E G+K+T W+IP +
Sbjct: 272 LWKDQALVELNKAVLYSYKKQGVSIVDHHTAASQFKRFEEQEEEAGRKLTGDWTWLIPPI 331
Query: 98 YG------HQAHSNMLIMCFLFPQ--PYD 118
G H+++ N ++ F Q PY+
Sbjct: 332 SGSATHIFHRSYDNSIVKPNYFYQDKPYE 360
>pdb|2EK4|A Chain A, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (L8m)
pdb|2EK4|B Chain B, Structural Study Of Project Id Ph0725 From Pyrococcus
Horikoshii Ot3 (L8m)
Length = 265
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
Query: 107 LIMCFLFPQPYDKKQIDIRTM-------LTFAEFYTSLL-GFTLYRL 145
+++ F+ YD++ I ++ + FAEFYTSL+ G TL R+
Sbjct: 1 MVLYFIGMGLYDERDITVKGLEIAKKCDYVFAEFYTSLMAGTTLGRI 47
>pdb|2B78|A Chain A, A Putative Sam-Dependent Methyltransferase From
Streptococcus Mutans
pdb|3LDF|A Chain A, Crystal Structure Of Smu.776, A Putative Methyltransferase
Complexed With Sah
Length = 385
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 68 ALRKAFISIKGFYFQAEFKGQKITWIIPHLYGHQAHSNMLIM 109
A R+ + + G Y + FKG I + HLYG +A LI+
Sbjct: 138 AFRQVYPNFLGAYEKIRFKG--IDNVSAHLYGQEAPEQFLIL 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.333 0.145 0.472
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,688,362
Number of Sequences: 62578
Number of extensions: 164678
Number of successful extensions: 484
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 477
Number of HSP's gapped (non-prelim): 16
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 48 (23.1 bits)