Query psy11416
Match_columns 171
No_of_seqs 109 out of 165
Neff 3.0
Searched_HMMs 46136
Date Fri Aug 16 17:52:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06732 Pescadillo_N: Pescadi 100.0 1.8E-67 3.9E-72 454.6 14.1 139 8-166 116-254 (281)
2 KOG2481|consensus 100.0 1.3E-61 2.9E-66 445.4 8.1 134 8-161 119-252 (570)
3 COG5163 NOP7 Protein required 100.0 3.9E-52 8.4E-57 378.8 9.4 133 8-160 119-251 (591)
4 PF02877 PARP_reg: Poly(ADP-ri 42.7 21 0.00045 27.6 2.3 10 93-102 78-87 (133)
5 PF13457 SH3_8: SH3-like domai 33.8 56 0.0012 22.1 3.1 24 73-96 53-76 (79)
6 PF08338 DUF1731: Domain of un 32.5 21 0.00046 23.6 0.8 12 10-21 36-47 (48)
7 cd06875 PX_IRAS The phosphoino 29.8 1.4E+02 0.0031 22.5 5.0 22 79-100 18-39 (116)
8 TIGR02221 cas_TM1812 CRISPR-as 28.6 1.7E+02 0.0038 25.2 5.8 69 47-143 139-207 (218)
9 cd06861 PX_Vps5p The phosphoin 27.3 51 0.0011 24.5 2.1 58 10-71 42-101 (112)
10 PF03455 dDENN: dDENN domain; 25.0 81 0.0018 21.1 2.6 31 122-154 1-31 (68)
11 PHA02843 hypothetical protein; 24.0 38 0.00083 24.8 0.9 13 69-81 61-73 (73)
12 cd07279 PX_SNX20_21_like The p 23.7 51 0.0011 24.4 1.5 58 9-71 40-101 (112)
13 cd06881 PX_SNX15_like The phos 23.5 73 0.0016 24.0 2.4 29 43-71 78-106 (117)
14 KOG2721|consensus 21.5 1.5E+02 0.0033 26.5 4.3 37 125-161 89-125 (260)
15 cd08819 CARD_MDA5_2 Caspase ac 20.8 29 0.00062 26.4 -0.3 17 6-22 64-80 (88)
No 1
>PF06732 Pescadillo_N: Pescadillo N-terminus; InterPro: IPR010613 Pescadillo protein localises to distinct substructures of the interphase nucleus including nucleoli, the site of ribosome biogenesis. During mitosis pescadillo closely associates with the periphery of metaphase chromosomes and by late anaphase is associated with nucleolus-derived foci and prenucleolar bodies. Blastomeres in mouse embryos lacking pescadillo arrest at morula stages of development, the nucleoli fail to differentiate and accumulation of ribosomes is inhibited. It has been proposed that in mammalian cells pescadillo is essential for ribosome biogenesis and nucleologenesis and that disruption to its function results in cell cycle arrest []. ; GO: 0042254 ribosome biogenesis, 0005730 nucleolus
Probab=100.00 E-value=1.8e-67 Score=454.63 Aligned_cols=139 Identities=50% Similarity=0.859 Sum_probs=134.9
Q ss_pred CCCCCChHHHHhCcchhhhHHHHHhcCCCCCCcCCCCchhhhHHHhhhHHHHHHHHHHhcccceeeeeeeeeEEEEEEcC
Q psy11416 8 SVVLNRFSDALRDLDDALTLCILIGRMPGLKKQRLGQDKGLMELCQRLPVEFMHAVIHARALRKAFISIKGFYFQAEFKG 87 (171)
Q Consensus 8 ~~RYPtF~DALrDLDDaLtli~Lfa~lP~~~~i~~g~~~~~i~~c~rL~~EF~~yVi~~r~LrKvFiSIKGiYyQAei~G 87 (171)
-+|||||+|||||||||||||+|||+||+++++++ +++++|+||++||++||+++++|||||||||||||||||+|
T Consensus 116 KERYPtF~dALrDLDDaLs~i~Lfa~lp~~~~i~~----~~i~~c~rL~~ef~~yv~~~~~LrKvFiSiKGiYyQAeI~G 191 (281)
T PF06732_consen 116 KERYPTFIDALRDLDDALSMIFLFATLPADKKIPS----ELIAKCRRLCNEFQHYVIRTRSLRKVFISIKGIYYQAEILG 191 (281)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHhCCCcCCCCh----HHHHHHHHHHHHHHHHHHHhhhhhhheeeeeeEEEEEEECC
Confidence 38999999999999999999999999999999888 99999999999999999999999999999999999999999
Q ss_pred eeEEEecccccccccchhhhHhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCccccccc
Q psy11416 88 QKITWIIPHLYGHQAHSNMLIMCFLFPQPYDKKQIDIRTMLTFAEFYTSLLGFTLYRLYHTLNLAYPPCFSPQFRHQKW 166 (171)
Q Consensus 88 q~ItWivPh~f~~~~~~~~~~~~~~~~~py~p~dVDfrvM~TF~EFY~tLLgFVnfkLY~~lnL~YPP~~~~~~~~~k~ 166 (171)
|+|||++||+|+|.. |.||||+||+||+|||+|||||||||||+++||.|||+++...+++..
T Consensus 192 ~~ItWl~Ph~f~~~~----------------p~dVD~~vm~tFlEFY~tLl~FVnfkLy~~~~l~YPP~~~~~~~~~~~ 254 (281)
T PF06732_consen 192 QKITWLVPHQFSQDI----------------PTDVDFRVMLTFLEFYTTLLGFVNFKLYHSLNLVYPPKLDSSLDKEAA 254 (281)
T ss_pred ceEEEEeccccCCCC----------------CCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccchhc
Confidence 999999999999998 999999999999999999999999999999999999999998887653
No 2
>KOG2481|consensus
Probab=100.00 E-value=1.3e-61 Score=445.39 Aligned_cols=134 Identities=49% Similarity=0.858 Sum_probs=131.0
Q ss_pred CCCCCChHHHHhCcchhhhHHHHHhcCCCCCCcCCCCchhhhHHHhhhHHHHHHHHHHhcccceeeeeeeeeEEEEEEcC
Q psy11416 8 SVVLNRFSDALRDLDDALTLCILIGRMPGLKKQRLGQDKGLMELCQRLPVEFMHAVIHARALRKAFISIKGFYFQAEFKG 87 (171)
Q Consensus 8 ~~RYPtF~DALrDLDDaLtli~Lfa~lP~~~~i~~g~~~~~i~~c~rL~~EF~~yVi~~r~LrKvFiSIKGiYyQAei~G 87 (171)
.+|||||+|||||||||||||||||+||++++++. +++..|+||+.|||||||++++|||||||||||||||||.|
T Consensus 119 KERyptf~dAlrDlddaLsmlfLfs~lP~td~~~~----~~v~~crrlt~EF~hYVi~s~aLrkvF~SiKGiYyQAei~g 194 (570)
T KOG2481|consen 119 KERYPTFIDALRDLDDALSMLFLFSTLPSTDRLHV----KIVALCRRLTAEFMHYVIASSALRKVFLSIKGIYYQAEILG 194 (570)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHhhCCccccchh----hHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcceehhhhhcc
Confidence 37999999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred eeEEEecccccccccchhhhHhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcc
Q psy11416 88 QKITWIIPHLYGHQAHSNMLIMCFLFPQPYDKKQIDIRTMLTFAEFYTSLLGFTLYRLYHTLNLAYPPCFSPQF 161 (171)
Q Consensus 88 q~ItWivPh~f~~~~~~~~~~~~~~~~~py~p~dVDfrvM~TF~EFY~tLLgFVnfkLY~~lnL~YPP~~~~~~ 161 (171)
|+|||+|||.|++.. |.||||+||.||+|||+|||||||||||+++||.|||+++.+.
T Consensus 195 qkitWivP~~f~~~~----------------~tdVDf~vm~tF~EFY~~llgFvnfkLyq~l~l~YPpkld~~~ 252 (570)
T KOG2481|consen 195 QKITWIVPYAFVELH----------------PTDVDFRVMPTFLEFYTTLLGFVNFKLYQDLNLSYPPKLDGQA 252 (570)
T ss_pred cceEEEeecCCCCcC----------------ccccccchhhhHHHHHHHHHhhhhHHHhhhccccCCCcccchh
Confidence 999999999999998 9999999999999999999999999999999999999999863
No 3
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-52 Score=378.79 Aligned_cols=133 Identities=35% Similarity=0.598 Sum_probs=130.1
Q ss_pred CCCCCChHHHHhCcchhhhHHHHHhcCCCCCCcCCCCchhhhHHHhhhHHHHHHHHHHhcccceeeeeeeeeEEEEEEcC
Q psy11416 8 SVVLNRFSDALRDLDDALTLCILIGRMPGLKKQRLGQDKGLMELCQRLPVEFMHAVIHARALRKAFISIKGFYFQAEFKG 87 (171)
Q Consensus 8 ~~RYPtF~DALrDLDDaLtli~Lfa~lP~~~~i~~g~~~~~i~~c~rL~~EF~~yVi~~r~LrKvFiSIKGiYyQAei~G 87 (171)
.+|||+|.||++|+||||+|+|||++||.+++|.+ .++..|+++|++|++||++.+.|||+|+||||+||||+|.|
T Consensus 119 KeRyp~f~dAv~diddaLsmLfLfs~lp~td~i~s----~~~~~~q~vc~~f~~yV~r~~llrk~f~SikGvYyQa~i~g 194 (591)
T COG5163 119 KERYPGFGDAVDDIDDALSMLFLFSMLPLTDRISS----KIANDAQEVCEMFEDYVRRRSLLRKSFMSIKGVYYQATIGG 194 (591)
T ss_pred HHhcCChhhHHHHHHHHHHHHHHHhcCCccchhhH----HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeeeecc
Confidence 37999999999999999999999999999999988 99999999999999999999999999999999999999999
Q ss_pred eeEEEecccccccccchhhhHhhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCc
Q psy11416 88 QKITWIIPHLYGHQAHSNMLIMCFLFPQPYDKKQIDIRTMLTFAEFYTSLLGFTLYRLYHTLNLAYPPCFSPQ 160 (171)
Q Consensus 88 q~ItWivPh~f~~~~~~~~~~~~~~~~~py~p~dVDfrvM~TF~EFY~tLLgFVnfkLY~~lnL~YPP~~~~~ 160 (171)
++|+|+|||.|++.+ |.|||||||+||+|||+||||||+||||.+.||.|||++|-.
T Consensus 195 e~v~W~VPykf~e~i----------------P~dvdfrim~tflefy~~ll~fV~~Kly~~~gl~yPpK~d~~ 251 (591)
T COG5163 195 EKVVWFVPYKFPENI----------------PGDVDFRIMLTFLEFYSTLLHFVSLKLYVEEGLDYPPKFDWS 251 (591)
T ss_pred eEEEEEeeccccccC----------------CCchhHHHHHHHHHHHHHHHHHhhHHHHHhhcccCCcccccC
Confidence 999999999999999 999999999999999999999999999999999999999854
No 4
>PF02877 PARP_reg: Poly(ADP-ribose) polymerase, regulatory domain; InterPro: IPR004102 Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The regulatory domain of the polymerase is almost always associated with the C-terminal catalytic domain (see IPR001290 from INTERPRO). This domain consists of a duplication of two helix-loop-helix structural repeats [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity, 0006471 protein ADP-ribosylation; PDB: 1GS0_B 3FHB_A 3C49_A 3CE0_A 3C4H_A 3KCZ_B 3KJD_B 3L3M_A 3GJW_A 1UK1_A ....
Probab=42.71 E-value=21 Score=27.63 Aligned_cols=10 Identities=40% Similarity=0.976 Sum_probs=6.8
Q ss_pred eccccccccc
Q psy11416 93 IIPHLYGHQA 102 (171)
Q Consensus 93 ivPh~f~~~~ 102 (171)
++||.|+...
T Consensus 78 lIPh~fg~~~ 87 (133)
T PF02877_consen 78 LIPHNFGRSR 87 (133)
T ss_dssp HSTB-STTS-
T ss_pred HCCCcccCCC
Confidence 6899998766
No 5
>PF13457 SH3_8: SH3-like domain; PDB: 1M9S_A.
Probab=33.79 E-value=56 Score=22.12 Aligned_cols=24 Identities=25% Similarity=0.602 Sum_probs=18.9
Q ss_pred eeeeeeeEEEEEEcCeeEEEeccc
Q psy11416 73 FISIKGFYFQAEFKGQKITWIIPH 96 (171)
Q Consensus 73 FiSIKGiYyQAei~Gq~ItWivPh 96 (171)
-.--.|-||+..+.|..|-||---
T Consensus 53 ~~t~~~tw~~i~~~~~~iGWid~~ 76 (79)
T PF13457_consen 53 ATTKNGTWYQISLNGKQIGWIDKN 76 (79)
T ss_dssp EEETTEEEEEEEETTCEEEEEETT
T ss_pred EEeCccEEEEEEECCeEEEEEEcc
Confidence 334457899999999999999643
No 6
>PF08338 DUF1731: Domain of unknown function (DUF1731); InterPro: IPR013549 This domain of unknown function appears towards the C terminus of proteins of the NAD dependent epimerase/dehydratase family (IPR001509 from INTERPRO) in bacteria, eukaryotes and archaea. Many of the proteins in which it is found are involved in cell-division inhibition. ; PDB: 3OH8_A.
Probab=32.47 E-value=21 Score=23.63 Aligned_cols=12 Identities=42% Similarity=0.600 Sum_probs=9.1
Q ss_pred CCCChHHHHhCc
Q psy11416 10 VLNRFSDALRDL 21 (171)
Q Consensus 10 RYPtF~DALrDL 21 (171)
+||+..+||+||
T Consensus 36 ~~p~l~~AL~~l 47 (48)
T PF08338_consen 36 RYPTLEEALRDL 47 (48)
T ss_dssp S-SSHHHHHHH-
T ss_pred cCCCHHHHHhcc
Confidence 799999999986
No 7
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a
Probab=29.85 E-value=1.4e+02 Score=22.50 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=17.2
Q ss_pred eEEEEEEcCeeEEEeccccccc
Q psy11416 79 FYFQAEFKGQKITWIIPHLYGH 100 (171)
Q Consensus 79 iYyQAei~Gq~ItWivPh~f~~ 100 (171)
.+|+.+|.-..-+|.+.-.|++
T Consensus 18 ~~Y~I~V~~~~~~w~V~RRYse 39 (116)
T cd06875 18 TVYIIEVKVGSVEWTVKHRYSD 39 (116)
T ss_pred EEEEEEEEECCeEEEEEecHHH
Confidence 4899888755678998888774
No 8
>TIGR02221 cas_TM1812 CRISPR-associated protein, TM1812 family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1812 of Thermotoga maritima, is found also in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, a large plasmid of Synechocystis sp. PCC 6803, and Fibrobacter succinogenes S85.
Probab=28.61 E-value=1.7e+02 Score=25.15 Aligned_cols=69 Identities=19% Similarity=0.306 Sum_probs=41.8
Q ss_pred hhhHHHhhhHHHHHHHHHHhcccceeeeeeeeeEEEEEEcCeeEEEecccccccccchhhhHhhhcCCCCCCCCcchHHH
Q psy11416 47 GLMELCQRLPVEFMHAVIHARALRKAFISIKGFYFQAEFKGQKITWIIPHLYGHQAHSNMLIMCFLFPQPYDKKQIDIRT 126 (171)
Q Consensus 47 ~~i~~c~rL~~EF~~yVi~~r~LrKvFiSIKGiYyQAei~Gq~ItWivPh~f~~~~~~~~~~~~~~~~~py~p~dVDfrv 126 (171)
++++-.|-++.-....+.-.|.+++ +.|||+||-|-=..+ + ... ..=+|..-
T Consensus 139 DITHgFR~iP~l~~~~~~ylk~~k~--v~i~~I~YGa~e~~~------~----~~~----------------~Pi~DLt~ 190 (218)
T TIGR02221 139 DITHGFRFLPVVALAAIEYLRYVKN--VKVEGVLYGALDMNS------E----LGH----------------SPIVDLKP 190 (218)
T ss_pred EccCcccchHHHHHHHHHHHHHhcC--ceEeeEEEeeeccCC------C----CCC----------------CceEecHH
Confidence 3444444444433333344455555 789999999832222 1 111 23479999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy11416 127 MLTFAEFYTSLLGFTLY 143 (171)
Q Consensus 127 M~TF~EFY~tLLgFVnf 143 (171)
|.+.+++=..+=.|+++
T Consensus 191 ~~~l~dW~~a~~~F~~~ 207 (218)
T TIGR02221 191 MLEISDWVEGLGRFVTY 207 (218)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99988888888777765
No 9
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=27.31 E-value=51 Score=24.51 Aligned_cols=58 Identities=16% Similarity=0.036 Sum_probs=36.5
Q ss_pred CCCChHHHHhCcchhhhHHHHHhcCCCC--CCcCCCCchhhhHHHhhhHHHHHHHHHHhcccce
Q psy11416 10 VLNRFSDALRDLDDALTLCILIGRMPGL--KKQRLGQDKGLMELCQRLPVEFMHAVIHARALRK 71 (171)
Q Consensus 10 RYPtF~DALrDLDDaLtli~Lfa~lP~~--~~i~~g~~~~~i~~c~rL~~EF~~yVi~~r~LrK 71 (171)
||.-|.. |.+.|+..+--..+|.. |+.-...+++.++..++-..+|+..|.....|++
T Consensus 42 RYsdF~~----L~~~L~~~~~~~~iP~lP~K~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~ 101 (112)
T cd06861 42 RYRDFRW----LYRQLQNNHPGVIVPPPPEKQSVGRFDDNFVEQRRAALEKMLRKIANHPVLQK 101 (112)
T ss_pred ehHHHHH----HHHHHHHHCCCCccCCCCCcccccCCCHHHHHHHHHHHHHHHHHHHCCccccc
Confidence 4555533 44555543322223432 2232246779999999999999999998877765
No 10
>PF03455 dDENN: dDENN domain; InterPro: IPR005112 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form a globular domain that is completely alpha helical []. Although not statistically supported it has been suggested that this domain may be similar to members of the Rho/Rac/Cdc42 GEF family [].; PDB: 3TW8_A.
Probab=25.04 E-value=81 Score=21.11 Aligned_cols=31 Identities=35% Similarity=0.574 Sum_probs=18.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q psy11416 122 IDIRTMLTFAEFYTSLLGFTLYRLYHTLNLAYP 154 (171)
Q Consensus 122 VDfrvM~TF~EFY~tLLgFVnfkLY~~lnL~YP 154 (171)
+|-.|...|+.|...|+| +||-|-...-.-|
T Consensus 1 ~d~~Ir~~Fl~~f~~ll~--~Yr~~~~~~~~~~ 31 (68)
T PF03455_consen 1 LDDQIREAFLRFFVSLLG--NYREYLIYDRQSP 31 (68)
T ss_dssp --THHHHHHHHHHHHHHG--GGGGG--------
T ss_pred ChHHHHHHHHHHHHHHHH--HHHHHHcCCCCCC
Confidence 366788999999999998 7887755443333
No 11
>PHA02843 hypothetical protein; Provisional
Probab=24.00 E-value=38 Score=24.79 Aligned_cols=13 Identities=54% Similarity=0.912 Sum_probs=11.7
Q ss_pred cceeeeeeeeeEE
Q psy11416 69 LRKAFISIKGFYF 81 (171)
Q Consensus 69 LrKvFiSIKGiYy 81 (171)
-||.+-|||.+||
T Consensus 61 srksycsiksvyf 73 (73)
T PHA02843 61 SRKSYCSIKSVYF 73 (73)
T ss_pred ccccceeEeEeeC
Confidence 4899999999996
No 12
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=23.66 E-value=51 Score=24.39 Aligned_cols=58 Identities=19% Similarity=0.098 Sum_probs=37.8
Q ss_pred CCCCChHHHHhCcchhhhHHHH----HhcCCCCCCcCCCCchhhhHHHhhhHHHHHHHHHHhcccce
Q psy11416 9 VVLNRFSDALRDLDDALTLCIL----IGRMPGLKKQRLGQDKGLMELCQRLPVEFMHAVIHARALRK 71 (171)
Q Consensus 9 ~RYPtF~DALrDLDDaLtli~L----fa~lP~~~~i~~g~~~~~i~~c~rL~~EF~~yVi~~r~LrK 71 (171)
-||..|.+ |-+.|.-.+- ...+|. |+.-...+++.+++-+...+.|++.+.....|+.
T Consensus 40 RRYsdF~~----L~~~L~~~~p~~~~~~~lP~-K~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~ 101 (112)
T cd07279 40 RRYSDFLK----LYKALRKQHPQLMAKVSFPR-KVLMGNFSSELIAERSRAFEQFLGHILSIPNLRD 101 (112)
T ss_pred cchHhHHH----HHHHHHHHCCCcCCCCCCCC-CeecccCCHHHHHHHHHHHHHHHHHHhCCHhhhc
Confidence 47777755 4455554331 123554 2232246789999999999999999988776654
No 13
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=23.53 E-value=73 Score=23.99 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=25.1
Q ss_pred CCchhhhHHHhhhHHHHHHHHHHhcccce
Q psy11416 43 GQDKGLMELCQRLPVEFMHAVIHARALRK 71 (171)
Q Consensus 43 g~~~~~i~~c~rL~~EF~~yVi~~r~LrK 71 (171)
..+++.|+.-++-..+|++.|.....|++
T Consensus 78 ~~~~~~IeeRr~~Le~fL~~i~~~p~l~~ 106 (117)
T cd06881 78 RFDAAVIEERRQAILELLDFVGNHPALYQ 106 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCHhhhc
Confidence 47889999999999999999988877765
No 14
>KOG2721|consensus
Probab=21.52 E-value=1.5e+02 Score=26.53 Aligned_cols=37 Identities=22% Similarity=0.469 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcc
Q psy11416 125 RTMLTFAEFYTSLLGFTLYRLYHTLNLAYPPCFSPQF 161 (171)
Q Consensus 125 rvM~TF~EFY~tLLgFVnfkLY~~lnL~YPP~~~~~~ 161 (171)
++|.-++.|+++---+-==+-+..+.|.|||.+|++.
T Consensus 89 Ki~s~v~SfF~s~YV~~W~~ffp~~~L~y~PsFdgrv 125 (260)
T KOG2721|consen 89 KILSLVASFFASVYVTKWKKFFPHLKLLYAPSFDGRV 125 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCCCcE
Confidence 5677778887765444444556679999999999753
No 15
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=20.76 E-value=29 Score=26.43 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=14.3
Q ss_pred cCCCCCCChHHHHhCcc
Q psy11416 6 RNSVVLNRFSDALRDLD 22 (171)
Q Consensus 6 ~~~~RYPtF~DALrDLD 22 (171)
|++..||.|.+||||-+
T Consensus 64 rg~~aF~~Fl~aLreT~ 80 (88)
T cd08819 64 QKEGWFSKFLQALRETE 80 (88)
T ss_pred cCCcHHHHHHHHHHHcC
Confidence 67788999999999853
Done!