Query psy11416
Match_columns 171
No_of_seqs 109 out of 165
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 17:52:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9s_A Internalin B; cell inva 43.3 14 0.00049 33.1 2.9 25 76-100 490-514 (605)
2 4hci_A Cupredoxin 1; structura 30.7 34 0.0012 23.1 2.6 28 72-99 16-53 (100)
3 3zwl_E Eukaryotic translation 21.7 65 0.0022 21.1 2.6 23 45-67 10-32 (50)
4 1unn_C POL IV, DNA polymerase 13.5 1.2E+02 0.004 21.0 2.5 34 48-82 27-60 (115)
5 3s8i_A Protein DDI1 homolog 1; 10.7 1.7E+02 0.0057 21.8 2.7 28 67-94 13-40 (148)
6 3e5d_A Putative glyoxalase I; 10.6 1.1E+02 0.0037 19.6 1.4 16 127-142 14-29 (127)
7 3sk2_A EHPR; antibiotic resist 9.3 1.3E+02 0.0046 19.9 1.6 15 127-141 24-38 (132)
8 3ey7_A Biphenyl-2,3-DIOL 1,2-d 9.3 1.3E+02 0.0043 19.4 1.4 15 127-141 21-35 (133)
9 2i7r_A Conserved domain protei 9.0 1.5E+02 0.005 19.0 1.6 15 127-141 16-30 (118)
10 3otd_A TRNA(His) guanylyltrans 8.8 2.1E+02 0.0071 24.5 2.8 44 115-160 87-130 (269)
No 1
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=43.31 E-value=14 Score=33.10 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=21.8
Q ss_pred eeeeEEEEEEcCeeEEEeccccccc
Q psy11416 76 IKGFYFQAEFKGQKITWIIPHLYGH 100 (171)
Q Consensus 76 IKGiYyQAei~Gq~ItWivPh~f~~ 100 (171)
=+|.|||..+.|+.|-|+--..+..
T Consensus 490 ~~~~yy~~~~~~k~iGWid~~al~~ 514 (605)
T 1m9s_A 490 PITTWYQFSIGGKVIGWVDTRALNT 514 (605)
T ss_dssp SSCEEEEEEETTEEEEEEETTTEEE
T ss_pred CCceEEEEEECCCeeEeeccccccc
Confidence 3499999999999999999887753
No 2
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=30.67 E-value=34 Score=23.06 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=20.2
Q ss_pred eeeeeeeeEEE---EEEc-CeeEEEe------cccccc
Q psy11416 72 AFISIKGFYFQ---AEFK-GQKITWI------IPHLYG 99 (171)
Q Consensus 72 vFiSIKGiYyQ---Aei~-Gq~ItWi------vPh~f~ 99 (171)
+=|.+++.+|+ .+|. |++|+|. +||.|.
T Consensus 16 v~V~~~~~~F~P~~i~v~~G~tV~~~~~n~d~~~H~~~ 53 (100)
T 4hci_A 16 IEVELNDDYFNPNVITIPINESTTLLLKNKGKSEHTFT 53 (100)
T ss_dssp EEEEEETTEEESSEEEECTTSCEEEEEEECSSSCEEEE
T ss_pred EEEEEECCEEeCCEEEECCCCEEEEEEEcCCCceEEEE
Confidence 44778888886 5554 9999996 456554
No 3
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=21.66 E-value=65 Score=21.13 Aligned_cols=23 Identities=9% Similarity=-0.025 Sum_probs=19.3
Q ss_pred chhhhHHHhhhHHHHHHHHHHhc
Q psy11416 45 DKGLMELCQRLPVEFMHAVIHAR 67 (171)
Q Consensus 45 ~~~~i~~c~rL~~EF~~yVi~~r 67 (171)
+.++|+.-+|+..||..|-..++
T Consensus 10 ~~evIe~RRrlLeEW~awRa~~~ 32 (50)
T 3zwl_E 10 MRDLILHQRELLKQWTEYREKIG 32 (50)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999988654
No 4
>1unn_C POL IV, DNA polymerase IV; beta-clamp, translesion, transferase, DNA-directed D polymerase, DNA replication; HET: DNA; 1.9A {Escherichia coli} SCOP: d.240.1.1
Probab=13.55 E-value=1.2e+02 Score=21.03 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=21.0
Q ss_pred hhHHHhhhHHHHHHHHHHhcccceeeeeeeeeEEE
Q psy11416 48 LMELCQRLPVEFMHAVIHARALRKAFISIKGFYFQ 82 (171)
Q Consensus 48 ~i~~c~rL~~EF~~yVi~~r~LrKvFiSIKGiYyQ 82 (171)
+.+.|.+++..-..-= .++.+.|+||.||---|+
T Consensus 27 l~~l~~~v~~rLr~~~-~~~tV~k~~vkir~~dF~ 60 (115)
T 1unn_C 27 IERLYPELERRLAKVK-PDLLIARQGVKLKFDDFQ 60 (115)
T ss_dssp HHHHHHHHHHHHHHHC-TTCBCSEEEEEEEETTSC
T ss_pred HHHHHHHHHHHHHhhC-CCCeEEEeEEEEEECCCC
Confidence 3444455554444444 567788999999965443
No 5
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=10.66 E-value=1.7e+02 Score=21.85 Aligned_cols=28 Identities=7% Similarity=0.230 Sum_probs=17.8
Q ss_pred cccceeeeeeeeeEEEEEEcCeeEEEec
Q psy11416 67 RALRKAFISIKGFYFQAEFKGQKITWII 94 (171)
Q Consensus 67 r~LrKvFiSIKGiYyQAei~Gq~ItWiv 94 (171)
.....+|-++.=+|-+++|+|++++-++
T Consensus 13 ~~~~~~~~~~~~l~v~~~Ing~~v~~LV 40 (148)
T 3s8i_A 13 GLVPRGSGQVTMLYINCKVNGHPLKAFV 40 (148)
T ss_dssp ---------CCCCEEEEEETTEEEEEEE
T ss_pred CcCceeccccCEEEEEEEECCEEEEEEE
Confidence 4456789999999999999999998876
No 6
>3e5d_A Putative glyoxalase I; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 2.70A {Listeria monocytogenes str}
Probab=10.57 E-value=1.1e+02 Score=19.63 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy11416 127 MLTFAEFYTSLLGFTL 142 (171)
Q Consensus 127 M~TF~EFY~tLLgFVn 142 (171)
+..-.+||+.+|||..
T Consensus 14 ~~~a~~FY~~~lG~~~ 29 (127)
T 3e5d_A 14 LEQMKQFYVTYFGATA 29 (127)
T ss_dssp HHHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHHhcCCee
Confidence 4567899999999854
No 7
>3sk2_A EHPR; antibiotic resistance, griseoluteate-binding protein; HET: GRI; 1.01A {Pantoea agglomerans} PDB: 3sk1_A*
Probab=9.35 E-value=1.3e+02 Score=19.90 Aligned_cols=15 Identities=13% Similarity=0.250 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy11416 127 MLTFAEFYTSLLGFT 141 (171)
Q Consensus 127 M~TF~EFY~tLLgFV 141 (171)
+..-.+||+.+|||-
T Consensus 24 ~~~s~~FY~~~lG~~ 38 (132)
T 3sk2_A 24 VERSTDFYRFIFKKE 38 (132)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCe
Confidence 456789999999984
No 8
>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A*
Probab=9.29 E-value=1.3e+02 Score=19.35 Aligned_cols=15 Identities=33% Similarity=0.687 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy11416 127 MLTFAEFYTSLLGFT 141 (171)
Q Consensus 127 M~TF~EFY~tLLgFV 141 (171)
+..-.+||+.+|||.
T Consensus 21 ~~~a~~FY~~~lG~~ 35 (133)
T 3ey7_A 21 IPTTTNFYEKVLGMK 35 (133)
T ss_dssp HHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHccCce
Confidence 456789999999985
No 9
>2i7r_A Conserved domain protein; structural genomics conserved domain, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae} SCOP: d.32.1.2
Probab=9.02 E-value=1.5e+02 Score=19.05 Aligned_cols=15 Identities=7% Similarity=-0.024 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy11416 127 MLTFAEFYTSLLGFT 141 (171)
Q Consensus 127 M~TF~EFY~tLLgFV 141 (171)
+..-++||+.+|||-
T Consensus 16 ~~~a~~FY~~~lG~~ 30 (118)
T 2i7r_A 16 VPQVCADLEHILDKK 30 (118)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhCCe
Confidence 456789999999984
No 10
>3otd_A TRNA(His) guanylyltransferase; polymerase-like PALM domain, catalytic carboxylates; 2.28A {Homo sapiens} PDB: 3otc_A 3otb_A 3ote_A
Probab=8.81 E-value=2.1e+02 Score=24.48 Aligned_cols=44 Identities=23% Similarity=0.364 Sum_probs=31.9
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCc
Q psy11416 115 QPYDKKQIDIRTMLTFAEFYTSLLGFTLYRLYHTLNLAYPPCFSPQ 160 (171)
Q Consensus 115 ~py~p~dVDfrvM~TF~EFY~tLLgFVnfkLY~~lnL~YPP~~~~~ 160 (171)
.|| ...+ -+++++++-+.++-.-+-.=+.+.+..|.|||.+|.+
T Consensus 87 ~~f-~rR~-~KL~S~~aS~fSs~y~~~w~~~fp~~~L~~pp~FD~R 130 (269)
T 3otd_A 87 NWF-KRRA-SKFMTHVASQFASSYVFYWRDYFEDQPLLYPPGFDGR 130 (269)
T ss_dssp CTT-TTBH-HHHHHHHHHHHHHHHHHTHHHHCSSSCCCSCCCEEEE
T ss_pred hhh-cchh-HHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCcee
Confidence 455 3344 4888888888887655555556778899999999864
Done!