Query psy11416
Match_columns 171
No_of_seqs 109 out of 165
Neff 3.0
Searched_HMMs 13730
Date Fri Aug 16 17:53:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11416.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11416hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m9sa3 b.34.11.1 (A:466-551) 62.9 2.6 0.00019 28.2 2.9 23 75-97 57-79 (86)
2 d1m9sa4 b.34.11.1 (A:552-629) 35.0 11 0.00081 25.0 2.4 20 76-95 53-72 (78)
3 d1xrka_ d.32.1.2 (A:) Bleomyci 33.2 6.8 0.00049 24.1 1.0 13 128-140 16-28 (120)
4 d1efya1 a.41.1.1 (A:662-796) D 25.9 20 0.0015 25.2 2.7 70 44-140 40-110 (135)
5 d1t47a2 d.32.1.3 (A:179-377) 4 13.9 31 0.0023 25.4 1.4 22 123-144 15-36 (199)
6 d1cjxa2 d.32.1.3 (A:154-356) 4 13.5 33 0.0024 25.1 1.4 20 125-144 16-35 (203)
7 d2fcra_ c.23.5.1 (A:) Flavodox 12.5 27 0.002 24.8 0.6 22 7-28 94-116 (173)
8 d2vzsa4 b.18.1.5 (A:42-225) Ex 11.9 54 0.0039 23.5 2.2 22 70-91 93-116 (184)
9 d1sqia2 d.32.1.3 (A:157-366) 4 11.6 40 0.0029 25.0 1.4 18 127-144 37-54 (210)
10 d2bykb1 a.22.1.3 (B:11-99) Chr 11.4 84 0.0061 19.9 2.9 30 32-65 11-40 (89)
No 1
>d1m9sa3 b.34.11.1 (A:466-551) Internalin B, C-terminal domains {Listeria monocytogenes [TaxId: 1639]}
Probab=62.86 E-value=2.6 Score=28.17 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=19.1
Q ss_pred eeeeeEEEEEEcCeeEEEecccc
Q psy11416 75 SIKGFYFQAEFKGQKITWIIPHL 97 (171)
Q Consensus 75 SIKGiYyQAei~Gq~ItWivPh~ 97 (171)
.-+|.|||..+.|+.|-||---.
T Consensus 57 T~~gty~qi~~~gk~iGWid~~a 79 (86)
T d1m9sa3 57 TPITTWYQFSIGGKVIGWVDTRA 79 (86)
T ss_dssp CSSCEEEEEEETTEEEEEEETTT
T ss_pred cCCcEEEEEEECCeEEEEEehhh
Confidence 34699999999999999996443
No 2
>d1m9sa4 b.34.11.1 (A:552-629) Internalin B, C-terminal domains {Listeria monocytogenes [TaxId: 1639]}
Probab=34.99 E-value=11 Score=24.98 Aligned_cols=20 Identities=10% Similarity=0.288 Sum_probs=17.7
Q ss_pred eeeeEEEEEEcCeeEEEecc
Q psy11416 76 IKGFYFQAEFKGQKITWIIP 95 (171)
Q Consensus 76 IKGiYyQAei~Gq~ItWivP 95 (171)
-+|.|||..+.|..|-|+--
T Consensus 53 ~~~~wY~~~~~~k~IGWv~a 72 (78)
T d1m9sa4 53 EGQLWYRIRTSSTFIGWTKA 72 (78)
T ss_dssp TTEEEEEEECSSSEEEEEEG
T ss_pred CCcEEEEEEeCCeEEeeEeh
Confidence 46899999999999999854
No 3
>d1xrka_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Streptoalloteichus hindustanus [TaxId: 2017]}
Probab=33.21 E-value=6.8 Score=24.10 Aligned_cols=13 Identities=46% Similarity=0.759 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q psy11416 128 LTFAEFYTSLLGF 140 (171)
Q Consensus 128 ~TF~EFY~tLLgF 140 (171)
..=++||+.+|||
T Consensus 16 ~~s~~FY~~~LG~ 28 (120)
T d1xrka_ 16 AEAVEFWTDRLGF 28 (120)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhCC
Confidence 4567999999998
No 4
>d1efya1 a.41.1.1 (A:662-796) Domain of poly(ADP-ribose) polymerase {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=25.94 E-value=20 Score=25.23 Aligned_cols=70 Identities=14% Similarity=0.254 Sum_probs=38.7
Q ss_pred CchhhhHHHhhhHHHHHHHHHHhcccceeeeeeeeeEEEEEEcCeeEEEecccccccccchhhhHhhhcCCCCCCCCcch
Q psy11416 44 QDKGLMELCQRLPVEFMHAVIHARALRKAFISIKGFYFQAEFKGQKITWIIPHLYGHQAHSNMLIMCFLFPQPYDKKQID 123 (171)
Q Consensus 44 ~~~~~i~~c~rL~~EF~~yVi~~r~LrKvFiSIKGiYyQAei~Gq~ItWivPh~f~~~~~~~~~~~~~~~~~py~p~dVD 123 (171)
+.++.+++|..+..|....|-....-++ ..--.. +.-=++||.|+.+. |.-+|
T Consensus 40 LSk~qI~~a~~iL~ei~~~l~~~~~~~~-l~~lsn----------~fYtlIPH~fg~~~----------------pp~i~ 92 (135)
T d1efya1 40 LSKRQIQSAYSILNEVQQAVSDGGSESQ-ILDLSN----------RFYTLIPHDFGMKK----------------PPLLS 92 (135)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTCCHHH-HHHHHH----------HHHHHSCBCCCSSC----------------CCCSC
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcchhHH-HHHHHH----------hhHHhCCcccCCCC----------------CCCCC
Confidence 4448888888888888887765432221 000011 11126899999876 33332
Q ss_pred -HHHHHHHHHHHHHHHHH
Q psy11416 124 -IRTMLTFAEFYTSLLGF 140 (171)
Q Consensus 124 -frvM~TF~EFY~tLLgF 140 (171)
...+.+=+|--++|...
T Consensus 93 ~~~~i~~k~~lLe~L~di 110 (135)
T d1efya1 93 NLEYIQAKVQMLDNLLDI 110 (135)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 44455555555566554
No 5
>d1t47a2 d.32.1.3 (A:179-377) 4-hydroxyphenylpyruvate dioxygenase, HppD {Streptomyces avermitilis [TaxId: 33903]}
Probab=13.87 E-value=31 Score=25.45 Aligned_cols=22 Identities=27% Similarity=0.667 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy11416 123 DIRTMLTFAEFYTSLLGFTLYR 144 (171)
Q Consensus 123 DfrvM~TF~EFY~tLLgFVnfk 144 (171)
-+.-|.++++||++++||..++
T Consensus 15 p~~~l~~av~fY~~vfGf~~~~ 36 (199)
T d1t47a2 15 ELGRMNEWVGFYNKVMGFTNMK 36 (199)
T ss_dssp CTTCHHHHHHHHHHHHCCEECS
T ss_pred ChhhHHHHHHHHHHHhCCeEee
Confidence 3456899999999999996554
No 6
>d1cjxa2 d.32.1.3 (A:154-356) 4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudomonas fluorescens [TaxId: 294]}
Probab=13.50 E-value=33 Score=25.07 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy11416 125 RTMLTFAEFYTSLLGFTLYR 144 (171)
Q Consensus 125 rvM~TF~EFY~tLLgFVnfk 144 (171)
.-|.+.++||+.+|||...+
T Consensus 16 ~~l~~a~~FY~~vlGf~~~~ 35 (203)
T d1cjxa2 16 GRMVYWANFYEKLFNFREAR 35 (203)
T ss_dssp THHHHHHHHHHHHHCCEEEE
T ss_pred hhHHHHHHHHHHHhCCEEeE
Confidence 45899999999999996544
No 7
>d2fcra_ c.23.5.1 (A:) Flavodoxin {Chondrus crispus [TaxId: 2769]}
Probab=12.45 E-value=27 Score=24.84 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=17.2
Q ss_pred CCCCC-CChHHHHhCcchhhhHH
Q psy11416 7 NSVVL-NRFSDALRDLDDALTLC 28 (171)
Q Consensus 7 ~~~RY-PtF~DALrDLDDaLtli 28 (171)
+++.| .+|.+|.+.|++.|.-+
T Consensus 94 D~~~y~~~F~~a~~~l~~~l~~~ 116 (173)
T d2fcra_ 94 DAEGYPDNFCDAIEEIHDCFAKQ 116 (173)
T ss_dssp CTTTCTTSTTTHHHHHHHHHHHT
T ss_pred CCCcchhhHHHHHHHHHHHHHhC
Confidence 45554 68999999999998653
No 8
>d2vzsa4 b.18.1.5 (A:42-225) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]}
Probab=11.94 E-value=54 Score=23.48 Aligned_cols=22 Identities=18% Similarity=0.569 Sum_probs=19.7
Q ss_pred ceeeeeeeeeEEEEEE--cCeeEE
Q psy11416 70 RKAFISIKGFYFQAEF--KGQKIT 91 (171)
Q Consensus 70 rKvFiSIKGiYyQAei--~Gq~It 91 (171)
+++++...|+.+.|+| +|+.|-
T Consensus 93 ~~~~L~f~gv~~~a~V~lNG~~vg 116 (184)
T d2vzsa4 93 SRTYLDFSGVLSKADVWVNGTKVA 116 (184)
T ss_dssp SEEEEEECCEESBEEEEETTEEEE
T ss_pred CEEEEEeCcEEEEEEEEECCEEEE
Confidence 5689999999999998 899995
No 9
>d1sqia2 d.32.1.3 (A:157-366) 4-hydroxyphenylpyruvate dioxygenase, HppD {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.64 E-value=40 Score=25.03 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy11416 127 MLTFAEFYTSLLGFTLYR 144 (171)
Q Consensus 127 M~TF~EFY~tLLgFVnfk 144 (171)
|.++++||+.++||..+.
T Consensus 37 ld~av~fY~~vfGf~~~~ 54 (210)
T d1sqia2 37 MESASEWYLKNLQFHRFW 54 (210)
T ss_dssp HHHHHHHHHHHHCCEEEC
T ss_pred HHHHHHHHHHHhCCEEEE
Confidence 999999999999997654
No 10
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=11.38 E-value=84 Score=19.94 Aligned_cols=30 Identities=13% Similarity=0.015 Sum_probs=24.4
Q ss_pred hcCCCCCCcCCCCchhhhHHHhhhHHHHHHHHHH
Q psy11416 32 GRMPGLKKQRLGQDKGLMELCQRLPVEFMHAVIH 65 (171)
Q Consensus 32 a~lP~~~~i~~g~~~~~i~~c~rL~~EF~~yVi~ 65 (171)
+.+|.+.+++. +....-.+-+.+|.+|+..
T Consensus 11 ~~~p~~~~isk----eA~~~i~~aae~FI~~lt~ 40 (89)
T d2bykb1 11 EALPESASVSK----EARAAIARAASVFAIFVTS 40 (89)
T ss_dssp HHSCTTCEECH----HHHHHHHHHHHHHHHHHHH
T ss_pred HhCcccchhhH----HHHHHHHHHHHHHHHHHHH
Confidence 35787777776 8888888999999999865
Done!