RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11416
         (171 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.8 bits (66), Expect = 0.48
 Identities = 31/222 (13%), Positives = 63/222 (28%), Gaps = 66/222 (29%)

Query: 4   RFRNSVVLNRFSDALRDLDD--------ALTL-C-ILI--------GRMPGLKKQRLGQD 45
             R  +    + + L  L +        A  L C IL+          +       +  D
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 46  ---KGL-----MELC--------QRLPVE------FMHAVIHARALRKAFISIKGF-YFQ 82
                L       L         Q LP E         ++I A ++R    +   + +  
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-AESIRDGLATWDNWKHVN 351

Query: 83  AEFKGQKITWIIPHLYGHQAHSNMLIMCFLFPQ----P--------YDKKQIDIRTMLTF 130
            +     I   +  L   + +  M     +FP     P        +D  + D+  ++  
Sbjct: 352 CDKLTTIIESSLNVLEPAE-YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN- 409

Query: 131 AEFYT-SLL-----GFTLYRLYHTLNLAY-PPCFSPQFRHQK 165
            + +  SL+       T+     ++ L       +    H+ 
Sbjct: 410 -KLHKYSLVEKQPKESTIS--IPSIYLELKVKLENEYALHRS 448


>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis
           inhibition, bromopyruvate, amino-acid biosynthesis; HET:
           FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A
           3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
          Length = 644

 Score = 27.8 bits (62), Expect = 1.9
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 11/74 (14%)

Query: 35  PGLKKQRLGQDKGLMELCQRLPVEFMHAV-----------IHARALRKAFISIKGFYFQA 83
           P +    + + +  +E C +LPV   H              H  A+ K   ++K     A
Sbjct: 338 PQIDFSNIDEIRRTVEYCNQLPVHERHPYGGDLVYTAFSGSHQDAINKGLDAMKLDADAA 397

Query: 84  EFKGQKITWIIPHL 97
           +     + W +P+L
Sbjct: 398 DCDVDDMLWQVPYL 411


>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A
           {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A*
           2csn_A*
          Length = 298

 Score = 27.3 bits (61), Expect = 2.6
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 38  KKQRLGQDK---GLMELCQRLPVEFMHAVIHARALR 70
           K +R+G+ K    L ELC   P EF   + +AR L 
Sbjct: 229 KYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLA 264


>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol,
           transferase; 2.00A {Oryza sativa japonica group}
          Length = 483

 Score = 26.9 bits (59), Expect = 3.4
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 38  KKQRLGQDK---GLMELCQRLPVEFMHAVIHARALR 70
           K +++ + K    +  LC+  P EF     + R+LR
Sbjct: 224 KYEKISEKKVATSIEALCRGYPTEFASYFHYCRSLR 259


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.3 bits (60), Expect = 3.7
 Identities = 35/175 (20%), Positives = 59/175 (33%), Gaps = 56/175 (32%)

Query: 4   RFRNSVVLNRFSDALRDLDDALTLCILIGRMPG-----LKKQRLGQDKGLMELCQRLPVE 58
           +F     L   ++     D+  T   L+G+  G     ++  ++GQ   ++ LC     E
Sbjct: 36  QFNKI--LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT---E 90

Query: 59  FMHAV-----IHARA----------LRKAFISIKGFYFQAEFKGQKITWIIPHLYGHQAH 103
           F +       IHA A          L K    IK  Y  A    ++     P  +  +++
Sbjct: 91  FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN-YITARIMAKR-----P--FDKKSN 142

Query: 104 SNMLIMCFLFPQPYDKKQIDIRTMLTF-----AEFYTSLLGF----TLYRLYHTL 149
           S       LF    +      + +  F      + Y     F     LY+ YH L
Sbjct: 143 SA------LFRAVGEGN---AQLVAIFGGQGNTDDY-----FEELRDLYQTYHVL 183


>3uue_A LIP1, secretory lipase (family 3); LID-domain, hydrolase; HET: NAG
           BMA MAN; 1.45A {Malassezia globosa} PDB: 3uuf_A*
          Length = 279

 Score = 26.0 bits (57), Expect = 6.1
 Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 3/44 (6%)

Query: 130 FAEFYTSLLGFTLYRLYHTLNL--AYPPCFSPQFRHQKWKIHID 171
           FA F    +G   + + +  +     PP     ++H    + I 
Sbjct: 183 FASFVDQKIGDKFHSIINGRDWVPTVPPRALG-YQHPSDYVWIY 225


>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding,
           membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
          Length = 345

 Score = 25.8 bits (57), Expect = 7.6
 Identities = 5/36 (13%), Positives = 10/36 (27%), Gaps = 3/36 (8%)

Query: 38  KKQRLGQDKGLM---ELCQRLPVEFMHAVIHARALR 70
           K   L +    +           E    ++ A +L 
Sbjct: 274 KTNLLDELPQSVLKWAPSGSSCCEIAQFLVCAHSLA 309


>3ct8_A Protein BH2160, putative glyoxalase; NP_243026.1,
           glyoxalase/bleomycin resis protein/dioxygenase
           superfamily, structural genomics; HET: UNL; 2.10A
           {Bacillus halodurans c-125}
          Length = 146

 Score = 25.2 bits (55), Expect = 9.3
 Identities = 6/17 (35%), Positives = 7/17 (41%)

Query: 131 AEFYTSLLGFTLYRLYH 147
             F+  LLG   Y  Y 
Sbjct: 35  IAFWDWLLGELGYEDYQ 51


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.332    0.145    0.465 

Gapped
Lambda     K      H
   0.267   0.0700    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,705,247
Number of extensions: 149578
Number of successful extensions: 451
Number of sequences better than 10.0: 1
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 15
Length of query: 171
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,272,666
Effective search space: 358903944
Effective search space used: 358903944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 54 (24.6 bits)