RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11416
         (171 letters)



>d1wb0a1 c.1.8.5 (A:22-266,A:337-388) Chitotriosidase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 297

 Score = 27.4 bits (60), Expect = 0.82
 Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 6/108 (5%)

Query: 30  LIGRMPGLKKQRLGQDKGLMELCQRLPVEFMHAVIHARALRKAFI-SIKGFYFQAEFKGQ 88
           L     GLKK        L         +    ++     R+ F+ S   F  +  F G 
Sbjct: 55  LYQEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGL 114

Query: 89  KITWIIPHLYGHQAH-----SNMLIMCFLFPQPYDKKQIDIRTMLTFA 131
            + W  P   G  A      + ++       Q   +     R +L+ A
Sbjct: 115 DLDWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAA 162


>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans
           [TaxId: 266]}
          Length = 105

 Score = 25.9 bits (56), Expect = 1.6
 Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 5/67 (7%)

Query: 74  ISIKGFYFQAEF----KGQKITWIIPHLYGHQAHS-NMLIMCFLFPQPYDKKQIDIRTML 128
           + I    ++        G  +TWI      H  H    ++       P  KK+       
Sbjct: 23  VDIAKMKYETPELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTF 82

Query: 129 TFAEFYT 135
           T A  Y 
Sbjct: 83  TEAGTYD 89


>gi|154685965|ref|YP_001421126.1|(145-295:304) aspartate
           carbamoyltransferase catalytic subunit [Bacillus
           amyloliquefaciens FZB42] 
           gi|166234047|sp|A7Z4G9.1|PYRB_BACA2 RecName:
           Full=Aspartate carbamoyltransferase; AltName:
           Full=Aspartate transcarbamylase; Short=ATCase 
           gi|154351816|gb|ABS73895.1| PyrB [Bacillus
           amyloliquefaciens FZB42]  E=8e-68 s/c=1.71 id=80%
           cov=101%
          Length = 151

 Score = 25.5 bits (55), Expect = 2.6
 Identities = 6/53 (11%), Positives = 14/53 (26%)

Query: 85  FKGQKITWIIPHLYGHQAHSNMLIMCFLFPQPYDKKQIDIRTMLTFAEFYTSL 137
           F+G  ++      +   A SN  ++  L  +         +            
Sbjct: 1   FQGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPPQWQDEKNAFGTCVQT 53


>d2pi6a1 c.1.8.5 (A:1-239,A:308-361) Signal processing protein
           (SPC-40, MGP-40) {Sheep (Ovis aries) [TaxId: 9940]}
          Length = 292

 Score = 25.5 bits (55), Expect = 3.4
 Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 1/83 (1%)

Query: 30  LIGRMPGLKKQRLGQDKGLMELCQRLPVEFMHAVIHARALRKAFI-SIKGFYFQAEFKGQ 88
           L   +  LK +       L         E    +      R+ FI S+  F     F G 
Sbjct: 55  LYDTLNTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114

Query: 89  KITWIIPHLYGHQAHSNMLIMCF 111
            + W+ P     +  + ++    
Sbjct: 115 DLAWLYPGRRDKRHLTTLVKEMK 137


>d1vkpa_ d.126.1.6 (A:) Agmatine iminohydrolase {Thale-cress
          (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 372

 Score = 24.7 bits (53), Expect = 6.5
 Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 1/20 (5%)

Query: 78 GFYFQAEFKGQKITWII-PH 96
          G+Y  AE+     TWI  P 
Sbjct: 8  GYYMPAEWDSHAQTWIGWPE 27


>d1jnda1 c.1.8.5 (A:2-278,A:371-420) Imaginal disc growth factor-2
           {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
          Length = 327

 Score = 24.7 bits (53), Expect = 6.7
 Identities = 14/119 (11%), Positives = 34/119 (28%), Gaps = 6/119 (5%)

Query: 59  FMHAVIHARALRKAFI-SIKGFYFQAEFKGQKITWIIPHLYGHQAHSNMLIMCFLFPQPY 117
           ++  +   +  +  FI S         F G  + +  P     + H ++ +      + +
Sbjct: 96  YIDLLEGEKVRQIGFIRSAYELVKTYGFDGLDLAYQFPKNKPRKVHGDLGLAWKSIKKLF 155

Query: 118 DKKQIDIRTMLTFAEFYTSLLG-----FTLYRLYHTLNLAYPPCFSPQFRHQKWKIHID 171
               I         E +T+L+              +L +      +  F        +D
Sbjct: 156 TGDFIVDPHAALHKEQFTALVRDVKDSLRADGFLLSLTVLPNVNSTWYFDIPALNGLVD 214


>d1vf8a1 c.1.8.5 (A:1-245,A:316-372) Chitinase-like lectin ym1,
           saccharide binding domain {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 302

 Score = 24.4 bits (52), Expect = 8.1
 Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 1/84 (1%)

Query: 30  LIGRMPGLKKQRLGQDKGLMELCQRLPVEFMHAVIHARALRKAFI-SIKGFYFQAEFKGQ 88
               + GLK +       L     +       A++     R+ FI S+  F  Q  F G 
Sbjct: 55  DYEALNGLKDKNTELKTLLAIGGWKFGPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGL 114

Query: 89  KITWIIPHLYGHQAHSNMLIMCFL 112
            + W  P   G       L    +
Sbjct: 115 NLDWQYPGSRGSPPKDKHLFSVLV 138


>d1yfna1 b.136.1.1 (A:4-111) Stringent starvation protein B, SspB
          {Escherichia coli [TaxId: 562]}
          Length = 108

 Score = 23.4 bits (51), Expect = 9.4
 Identities = 8/32 (25%), Positives = 12/32 (37%)

Query: 64 IHARALRKAFISIKGFYFQAEFKGQKITWIIP 95
          I  RA+    ++     F A F G      +P
Sbjct: 52 IAPRAVGNLELANDEVRFNARFGGIPRQVSVP 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.332    0.145    0.465 

Gapped
Lambda     K      H
   0.267   0.0493    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 667,187
Number of extensions: 29269
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 21
Length of query: 171
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,322,926
Effective search space: 121709192
Effective search space used: 121709192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.6 bits)