BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11418
(553 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99MN1|SYK_MOUSE Lysine--tRNA ligase OS=Mus musculus GN=Kars PE=1 SV=1
Length = 595
Score = 442 bits (1136), Expect = e-123, Method: Compositional matrix adjust.
Identities = 202/287 (70%), Positives = 249/287 (86%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVH 100
++++++RS AV+Q+K G PYPHKF V SL FI++YS L L +VTL VAGR+H
Sbjct: 72 NQYYKIRSQAVQQLKVTGEDPYPHKFHVDISLTQFIQEYSHLQPGDHLTDVTLKVAGRIH 131
Query: 101 AIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK 160
A R SG KL+FYDLRGEG+K+QVMAN+R Y+SEEEF K++RGDIIGV G+PGKTKK
Sbjct: 132 AKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVHINNKLRRGDIIGVEGNPGKTKK 191
Query: 161 GELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAY 220
GELSIIP+++TLLSPCLHMLPH+HFG+KDKETR+RQRYLDL++N+ +R KFIVR++II Y
Sbjct: 192 GELSIIPQEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIVRSKIITY 251
Query: 221 VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD 280
+R +LD LGFLE+ETPMMN+I GGA AKPF+T+HN+L+M+LYMRIAPELY KMLVVGG+D
Sbjct: 252 IRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGID 311
Query: 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
RVYE+GRQFRNEGIDLTHNPEFTTCEFYMAYADY+DLM +TE ++SG
Sbjct: 312 RVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMLSG 358
Score = 272 bits (695), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 142/271 (52%), Positives = 176/271 (64%), Gaps = 59/271 (21%)
Query: 337 VMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPH 396
VMAN+R Y+SEEEF K++RGDIIGV G+PGKTKKGELSIIP+++TLLSPCLHMLPH
Sbjct: 154 VMANSRNYKSEEEFVHINNKLRRGDIIGVEGNPGKTKKGELSIIPQEITLLSPCLHMLPH 213
Query: 397 MHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456
+HFG+KDKETR+RQRYLDL++N+ +R KFIVR++II Y+R +LD LGFLE+ETPMMN+I
Sbjct: 214 LHFGLKDKETRYRQRYLDLILNDFVRQKFIVRSKIITYIRSFLDELGFLEIETPMMNIIP 273
Query: 457 GGATAKPFVTHHN--DLNM------DLYMRI----------------------------- 479
GGA AKPF+T+HN D+N+ +LY ++
Sbjct: 274 GGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEF 333
Query: 480 -APELYL--------------------KSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRL 518
E Y+ KS GSYK+TYHPDGPE G E+DFTPPFRR+
Sbjct: 334 TTCEFYMAYADYHDLMEITEKMLSGMVKSITGSYKITYHPDGPE-GQAYEVDFTPPFRRI 392
Query: 519 HMFPALEAALGVKLPNPTEFDTPEANKFLSD 549
M LE ALGVKLP + F+T E K L D
Sbjct: 393 SMVEELEKALGVKLPETSLFETEETRKILDD 423
>sp|Q15046|SYK_HUMAN Lysine--tRNA ligase OS=Homo sapiens GN=KARS PE=1 SV=3
Length = 597
Score = 441 bits (1134), Expect = e-123, Method: Compositional matrix adjust.
Identities = 201/287 (70%), Positives = 248/287 (86%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVH 100
++++++RS A+ Q+K G PYPHKF V SL DFI+KYS L L ++TL VAGR+H
Sbjct: 74 NQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIH 133
Query: 101 AIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK 160
A R SG KL+FYDLRGEG+K+QVMAN+R Y+SEEEF K++RGDIIGV G+PGKTKK
Sbjct: 134 AKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKK 193
Query: 161 GELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAY 220
GELSIIP ++TLLSPCLHMLPH+HFG+KDKETR+RQRYLDL++N+ +R KFI+R++II Y
Sbjct: 194 GELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITY 253
Query: 221 VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD 280
+R +LD LGFLE+ETPMMN+I GGA AKPF+T+HN+L+M+LYMRIAPELY KMLVVGG+D
Sbjct: 254 IRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGID 313
Query: 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
RVYE+GRQFRNEGIDLTHNPEFTTCEFYMAYADY+DLM +TE ++SG
Sbjct: 314 RVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSG 360
Score = 264 bits (675), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 139/271 (51%), Positives = 174/271 (64%), Gaps = 59/271 (21%)
Query: 337 VMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPH 396
VMAN+R Y+SEEEF K++RGDIIGV G+PGKTKKGELSIIP ++TLLSPCLHMLPH
Sbjct: 156 VMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPH 215
Query: 397 MHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456
+HFG+KDKETR+RQRYLDL++N+ +R KFI+R++II Y+R +LD LGFLE+ETPMMN+I
Sbjct: 216 LHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIP 275
Query: 457 GGATAKPFVTHHN--DLNM------DLYMRI----------------------------- 479
GGA AKPF+T+HN D+N+ +LY ++
Sbjct: 276 GGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEF 335
Query: 480 -APELYL--------------------KSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRL 518
E Y+ K GSYKVTYHPDGPE G ++DFTPPFRR+
Sbjct: 336 TTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPE-GQAYDVDFTPPFRRI 394
Query: 519 HMFPALEAALGVKLPNPTEFDTPEANKFLSD 549
+M LE ALG+KLP F+T E K L D
Sbjct: 395 NMVEELEKALGMKLPETNLFETEETRKILDD 425
>sp|P37879|SYK_CRIGR Lysine--tRNA ligase OS=Cricetulus griseus GN=KARS PE=1 SV=1
Length = 597
Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust.
Identities = 201/287 (70%), Positives = 247/287 (86%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVH 100
++++++RS A+ Q+K G PYPHKF V SL FI++YS L L ++TL VAGR+H
Sbjct: 74 NQYYKIRSQAIHQLKVSGEDPYPHKFHVDISLTQFIQEYSQLQPGDHLTDITLKVAGRIH 133
Query: 101 AIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK 160
A R SG KL+FYDLRGEG+K+QVMAN+R Y+SEEEF K++RGDIIGV G+PGKTKK
Sbjct: 134 AKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRINNKLRRGDIIGVQGNPGKTKK 193
Query: 161 GELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAY 220
GELSIIP ++TLLSPCLHMLPH+HFG+KDKETR+RQRYLDL++N+ +R KFIVRA+II Y
Sbjct: 194 GELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIVRAKIITY 253
Query: 221 VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD 280
+R +LD LGFLE+ETPMMN+I GGA AKPF+T+HN+L+M+LYMRIAPELY KMLVVGG+D
Sbjct: 254 IRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGID 313
Query: 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
RVYE+GRQFRNEGIDLTHNPEFTTCEFYMAYADY+DLM +TE ++SG
Sbjct: 314 RVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMLSG 360
Score = 242 bits (618), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 110/150 (73%), Positives = 134/150 (89%)
Query: 337 VMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPH 396
VMAN+R Y+SEEEF K++RGDIIGV G+PGKTKKGELSIIP ++TLLSPCLHMLPH
Sbjct: 156 VMANSRNYKSEEEFVRINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPH 215
Query: 397 MHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456
+HFG+KDKETR+RQRYLDL++N+ +R KFIVRA+II Y+R +LD LGFLE+ETPMMN+I
Sbjct: 216 LHFGLKDKETRYRQRYLDLILNDFVRQKFIVRAKIITYIRSFLDELGFLEIETPMMNIIP 275
Query: 457 GGATAKPFVTHHNDLNMDLYMRIAPELYLK 486
GGA AKPF+T+HN+L+M+LYMRIAPELY K
Sbjct: 276 GGAVAKPFITYHNELDMNLYMRIAPELYHK 305
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 485 LKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEAN 544
+KS GSYK+TYHPDGPE G EIDFTPPFRR+ M LE ALGVKLP + F+T E
Sbjct: 362 VKSITGSYKITYHPDGPE-GEAYEIDFTPPFRRISMVEELEKALGVKLPETSLFETEETR 420
Query: 545 KFLSD 549
K L D
Sbjct: 421 KILDD 425
>sp|Q22099|SYK_CAEEL Lysine--tRNA ligase OS=Caenorhabditis elegans GN=krs-1 PE=2 SV=1
Length = 572
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 183/286 (63%), Positives = 235/286 (82%), Gaps = 1/286 (0%)
Query: 42 EFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHA 101
E+F +R +E + G +P+PHKF VT SL DFI KY+ L QV+E + +SVAGR+H+
Sbjct: 55 EYFNMRVRMIEARRAAGDNPFPHKFNVTISLTDFITKYTPLEKEQVVEEI-VSVAGRIHS 113
Query: 102 IRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKG 161
RESG+KL+FYD+ GEG IQ+MANA+ + + +F + +IKRGDI+G TG +TK G
Sbjct: 114 KRESGSKLVFYDIHGEGTHIQIMANAKFHTGDVDFVTLHDRIKRGDIVGFTGRATRTKAG 173
Query: 162 ELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221
ELS+IP ++ L+PCLHMLPH HFG+KDKE RFR+RYLDL++N R++ F++R++II ++
Sbjct: 174 ELSLIPNEILQLTPCLHMLPHSHFGLKDKELRFRKRYLDLILNPRVKDNFVIRSKIITFL 233
Query: 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDR 281
RRYLD+LGFLEVETP+MN IAGGATAKPF+THHNDL+M+L++R+APELY KMLVVGG+DR
Sbjct: 234 RRYLDNLGFLEVETPIMNQIAGGATAKPFITHHNDLDMNLFLRVAPELYHKMLVVGGIDR 293
Query: 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
VYEVGR FRNEGIDLTHNPEFTTCEFYMAYADY D++ LTEDL+S
Sbjct: 294 VYEVGRLFRNEGIDLTHNPEFTTCEFYMAYADYEDVIQLTEDLLSS 339
Score = 229 bits (583), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 116/265 (43%), Positives = 160/265 (60%), Gaps = 58/265 (21%)
Query: 337 VMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPH 396
+MANA+ + + +F + +IKRGDI+G TG +TK GELS+IP ++ L+PCLHMLPH
Sbjct: 135 IMANAKFHTGDVDFVTLHDRIKRGDIVGFTGRATRTKAGELSLIPNEILQLTPCLHMLPH 194
Query: 397 MHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456
HFG+KDKE RFR+RYLDL++N R++ F++R++II ++RRYLD+LGFLEVETP+MN IA
Sbjct: 195 SHFGLKDKELRFRKRYLDLILNPRVKDNFVIRSKIITFLRRYLDNLGFLEVETPIMNQIA 254
Query: 457 GGATAKPFVTHHN--DLNM------DLYMRI----------------------------- 479
GGATAKPF+THHN D+N+ +LY ++
Sbjct: 255 GGATAKPFITHHNDLDMNLFLRVAPELYHKMLVVGGIDRVYEVGRLFRNEGIDLTHNPEF 314
Query: 480 -APELYLK--------------------STHGSYKVTYHPDGPESGSPVEIDFTPPFRRL 518
E Y+ S G+YK+ YHP+GP + E+DFTPPF+R+
Sbjct: 315 TTCEFYMAYADYEDVIQLTEDLLSSMVMSIKGTYKIEYHPNGPNTEPVYEVDFTPPFKRV 374
Query: 519 HMFPALEAALGVKLPNPTEFDTPEA 543
HM+ L LG LP+P+ T EA
Sbjct: 375 HMYDGLAEKLGATLPDPSTLHTEEA 399
>sp|Q6F2U9|SYK_ORYSJ Lysine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os03g0586800
PE=2 SV=1
Length = 602
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/308 (56%), Positives = 225/308 (73%), Gaps = 21/308 (6%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVH 100
++++ R A++ +K G +PYPHKF ++ D+IEKY + L +VT +AGR+
Sbjct: 80 TQYYENRLKALDSLKATGVNPYPHKFLANITVADYIEKYKSMNVGDKLVDVTECLAGRIM 139
Query: 101 AIRESGTKLMFYDLRGEGLKIQVMANARMYQSEE-EFASDLVKIKRGDIIGVTGSPGKTK 159
R +KL+FYDL G G K+QV A+AR + E+ EF +KRGDI+GV G PGK+K
Sbjct: 140 TKRAQSSKLLFYDLYGGGEKVQVFADARTSELEDNEFIKFHSTLKRGDIVGVCGYPGKSK 199
Query: 160 KGELSIIPKKLTLLSPCLHMLPHMH--------------------FGVKDKETRFRQRYL 199
+GELSI PKK+ +LSPCLHM+P + ++D+ETR+RQRYL
Sbjct: 200 RGELSIFPKKIVVLSPCLHMMPRQKSEGSAVPTPWAPGMGRNIEKYVLRDQETRYRQRYL 259
Query: 200 DLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNM 259
DLM+N +RH F R+++++++R++LD L FLEVETPMMNMIAGGA A+PFVTHHN+LNM
Sbjct: 260 DLMVNHEVRHIFKTRSKVVSFIRKFLDGLDFLEVETPMMNMIAGGAAARPFVTHHNELNM 319
Query: 260 DLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMH 319
LYMRIAPELYLK LVVGGLDRVYE+G+QFRNEGIDLTHNPEFTTCEFYMAYADYNDL+
Sbjct: 320 RLYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYADYNDLIE 379
Query: 320 LTEDLISG 327
LTE ++SG
Sbjct: 380 LTETMLSG 387
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 158/292 (54%), Gaps = 82/292 (28%)
Query: 337 VMANARMYQSEE-EFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLP 395
V A+AR + E+ EF +KRGDI+GV G PGK+K+GELSI PKK+ +LSPCLHM+P
Sbjct: 162 VFADARTSELEDNEFIKFHSTLKRGDIVGVCGYPGKSKRGELSIFPKKIVVLSPCLHMMP 221
Query: 396 HMH--------------------FGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 435
+ ++D+ETR+RQRYLDLM+N +RH F R+++++++
Sbjct: 222 RQKSEGSAVPTPWAPGMGRNIEKYVLRDQETRYRQRYLDLMVNHEVRHIFKTRSKVVSFI 281
Query: 436 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNM--------DLYMR--------- 478
R++LD L FLEVETPMMNMIAGGA A+PFVTHHN+LNM +LY++
Sbjct: 282 RKFLDGLDFLEVETPMMNMIAGGAAARPFVTHHNELNMRLYMRIAPELYLKELVVGGLDR 341
Query: 479 ---------------------IAPELYL--------------------KSTHGSYKVTYH 497
E Y+ K G YK+ YH
Sbjct: 342 VYEIGKQFRNEGIDLTHNPEFTTCEFYMAYADYNDLIELTETMLSGMVKELTGGYKIKYH 401
Query: 498 PDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSD 549
+G E P+EIDFTPPFR++ M LEA KL P + + EANK+L D
Sbjct: 402 ANGVEK-PPIEIDFTPPFRKIDMIEELEAM--AKLNIPKDLSSDEANKYLID 450
>sp|P15180|SYKC_YEAST Lysine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=KRS1 PE=1 SV=2
Length = 591
Score = 359 bits (922), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 168/292 (57%), Positives = 225/292 (77%), Gaps = 6/292 (2%)
Query: 41 SEFFRLRSAAVEQM-KEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRV 99
S++F RS ++++ K P+PYPHKF V+ S +F+ KY+ L + L +S+AGR+
Sbjct: 71 SQYFETRSRQIQELRKTHEPNPYPHKFHVSISNPEFLAKYAHLKKGETLPEEKVSIAGRI 130
Query: 100 HAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK 159
HA RESG+KL FY L G+G+++Q+M+ + Y + + D +KRGDI+GV G G+T+
Sbjct: 131 HAKRESGSKLKFYVLHGDGVEVQLMSQLQDYCDPDSYEKDHDLLKRGDIVGVEGYVGRTQ 190
Query: 160 -----KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVR 214
+GE+S+ ++ LL+PCLHMLP HFG KD+ETR+R+RYLDL++N+ R++FI R
Sbjct: 191 PKKGGEGEVSVFVSRVQLLTPCLHMLPADHFGFKDQETRYRKRYLDLIMNKDARNRFITR 250
Query: 215 AQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKML 274
++II Y+RR+LD F+EVETPMMN+IAGGATAKPF+THHNDL+MD+YMRIAPEL+LK L
Sbjct: 251 SEIIRYIRRFLDQRKFIEVETPMMNVIAGGATAKPFITHHNDLDMDMYMRIAPELFLKQL 310
Query: 275 VVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
VVGGLDRVYE+GRQFRNEGID+THNPEFTTCEFY AYAD DLM +TE + S
Sbjct: 311 VVGGLDRVYEIGRQFRNEGIDMTHNPEFTTCEFYQAYADVYDLMDMTELMFS 362
Score = 193 bits (490), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 88/156 (56%), Positives = 121/156 (77%), Gaps = 5/156 (3%)
Query: 337 VMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-----KGELSIIPKKLTLLSPCL 391
+M+ + Y + + D +KRGDI+GV G G+T+ +GE+S+ ++ LL+PCL
Sbjct: 154 LMSQLQDYCDPDSYEKDHDLLKRGDIVGVEGYVGRTQPKKGGEGEVSVFVSRVQLLTPCL 213
Query: 392 HMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPM 451
HMLP HFG KD+ETR+R+RYLDL++N+ R++FI R++II Y+RR+LD F+EVETPM
Sbjct: 214 HMLPADHFGFKDQETRYRKRYLDLIMNKDARNRFITRSEIIRYIRRFLDQRKFIEVETPM 273
Query: 452 MNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKS 487
MN+IAGGATAKPF+THHNDL+MD+YMRIAPEL+LK
Sbjct: 274 MNVIAGGATAKPFITHHNDLDMDMYMRIAPELFLKQ 309
>sp|Q9UUE6|SYKC_SCHPO Lysine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=krs1 PE=3 SV=1
Length = 591
Score = 353 bits (907), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 172/297 (57%), Positives = 221/297 (74%), Gaps = 7/297 (2%)
Query: 41 SEFFRLRSAAVEQMKE-QGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRV 99
S++F RS + ++++ + P+PYPHKF VT +L +FI KY L + V ++VAGRV
Sbjct: 73 SQYFENRSRTIMELRQTKDPNPYPHKFQVTITLPEFIAKYEGLARGETKPEVEVAVAGRV 132
Query: 100 HAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK 159
+R +G KL FY++ +G K+QVM A+ + + FA+ ++RGDIIG+ G PG++
Sbjct: 133 LGLRTAGNKLRFYEIHADGKKLQVMCQAQDADTVD-FAAQHEHLRRGDIIGIRGYPGRSN 191
Query: 160 -----KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVR 214
GELSI ++ LLSPCL MLP H+G+KD E R RQRYLDL++N R +F++R
Sbjct: 192 PKGRADGELSIFARQCVLLSPCLRMLPKEHYGLKDLEIRHRQRYLDLIMNRSTRDRFVMR 251
Query: 215 AQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKML 274
++II Y+R + DS F+EVETPMMNMIAGGATAKPFVTHHNDL+MDLYMRIAPELYLKML
Sbjct: 252 SRIIQYIRHFFDSRDFMEVETPMMNMIAGGATAKPFVTHHNDLDMDLYMRIAPELYLKML 311
Query: 275 VVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKED 331
VVGGLDRVYE+GRQFRNEG DLTHNPEFT+ EFY AYADY DLM TE+L+SG +D
Sbjct: 312 VVGGLDRVYEIGRQFRNEGADLTHNPEFTSIEFYQAYADYYDLMDTTEELLSGLVKD 368
Score = 205 bits (521), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 114/264 (43%), Positives = 148/264 (56%), Gaps = 64/264 (24%)
Query: 349 EFASDLVKIKRGDIIGVTGSPGKTK-----KGELSIIPKKLTLLSPCLHMLPHMHFGVKD 403
+FA+ ++RGDIIG+ G PG++ GELSI ++ LLSPCL MLP H+G+KD
Sbjct: 167 DFAAQHEHLRRGDIIGIRGYPGRSNPKGRADGELSIFARQCVLLSPCLRMLPKEHYGLKD 226
Query: 404 KETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKP 463
E R RQRYLDL++N R +F++R++II Y+R + DS F+EVETPMMNMIAGGATAKP
Sbjct: 227 LEIRHRQRYLDLIMNRSTRDRFVMRSRIIQYIRHFFDSRDFMEVETPMMNMIAGGATAKP 286
Query: 464 FVTHHNDLNMD--------LYMRI------------------------------APELY- 484
FVTHHNDL+MD LY+++ + E Y
Sbjct: 287 FVTHHNDLDMDLYMRIAPELYLKMLVVGGLDRVYEIGRQFRNEGADLTHNPEFTSIEFYQ 346
Query: 485 -------------------LKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALE 525
+K GSYKV YHP+GPE G E+DF+ P+RR++M LE
Sbjct: 347 AYADYYDLMDTTEELLSGLVKDLTGSYKVPYHPEGPE-GPKWELDFSRPWRRINMIEYLE 405
Query: 526 AALGVKLPNPTEFDTPEANKFLSD 549
L K P + TPEAN FL D
Sbjct: 406 EKLNTKFPPGDQLHTPEANAFLRD 429
>sp|Q9ZPI1|SYK_ARATH Lysine--tRNA ligase OS=Arabidopsis thaliana GN=At3g11710 PE=2 SV=1
Length = 626
Score = 353 bits (906), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 175/335 (52%), Positives = 230/335 (68%), Gaps = 23/335 (6%)
Query: 15 AENSQQHTTAQTVTHLNTNYTQQCLTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLED 74
AE ++Q A + + + ++ ++++ R + K +G +PYPHKF V+ S+
Sbjct: 63 AEKAKQAPKASSQKAVAAD-DEEMDATQYYENRLKYLAAEKAKGENPYPHKFAVSMSIPK 121
Query: 75 FIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANA-RMYQSE 133
+IE Y L + +EN S+AGR+ + R S +KL FYDL G+ K+QVMA+A + E
Sbjct: 122 YIETYGSLNNGDHVENAEESLAGRIMSKRSSSSKLFFYDLHGDDFKVQVMADASKSGLDE 181
Query: 134 EEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMH--------- 184
EF KRGDI+GV G PGKTK+GELSI P+ LLS CLHM+P
Sbjct: 182 AEFLKLHSNAKRGDIVGVIGFPGKTKRGELSIFPRSFILLSHCLHMMPRKADNVNAKKPE 241
Query: 185 ------------FGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLE 232
+ +KD+E+R+RQR+LD+++N +R F RA+II+YVRR+LD+ FLE
Sbjct: 242 IWVPGQTRNPEAYVLKDQESRYRQRHLDMILNVEVRQIFRTRAKIISYVRRFLDNKNFLE 301
Query: 233 VETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNE 292
VETPMMNMIAGGA A+PFVTHHNDL+M LYMRIAPELYLK L+VGGL+RVYE+G+QFRNE
Sbjct: 302 VETPMMNMIAGGAAARPFVTHHNDLDMRLYMRIAPELYLKQLIVGGLERVYEIGKQFRNE 361
Query: 293 GIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
GIDLTHNPEFTTCEFYMA+ADYNDLM +TE ++SG
Sbjct: 362 GIDLTHNPEFTTCEFYMAFADYNDLMEMTEVMLSG 396
Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 116/293 (39%), Positives = 151/293 (51%), Gaps = 83/293 (28%)
Query: 337 VMANA-RMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLP 395
VMA+A + E EF KRGDI+GV G PGKTK+GELSI P+ LLS CLHM+P
Sbjct: 170 VMADASKSGLDEAEFLKLHSNAKRGDIVGVIGFPGKTKRGELSIFPRSFILLSHCLHMMP 229
Query: 396 HMH---------------------FGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAY 434
+ +KD+E+R+RQR+LD+++N +R F RA+II+Y
Sbjct: 230 RKADNVNAKKPEIWVPGQTRNPEAYVLKDQESRYRQRHLDMILNVEVRQIFRTRAKIISY 289
Query: 435 VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNM--------DLYMR-------- 478
VRR+LD+ FLEVETPMMNMIAGGA A+PFVTHHNDL+M +LY++
Sbjct: 290 VRRFLDNKNFLEVETPMMNMIAGGAAARPFVTHHNDLDMRLYMRIAPELYLKQLIVGGLE 349
Query: 479 ----------------------IAPELYL--------------------KSTHGSYKVTY 496
E Y+ K G YK+ Y
Sbjct: 350 RVYEIGKQFRNEGIDLTHNPEFTTCEFYMAFADYNDLMEMTEVMLSGMVKELTGGYKIKY 409
Query: 497 HPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSD 549
+ +G + P+EIDFTPPFRR+ M LE KL P + + EANK+L D
Sbjct: 410 NANGYDK-DPIEIDFTPPFRRIEMIGELEKV--AKLNIPKDLASEEANKYLID 459
>sp|Q43776|SYK_SOLLC Lysine--tRNA ligase OS=Solanum lycopersicum GN=LYSRS PE=2 SV=1
Length = 588
Score = 330 bits (845), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 163/320 (50%), Positives = 222/320 (69%), Gaps = 35/320 (10%)
Query: 45 RLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRE 104
RLR+ +E ++E G +PYPHKF +T S+ +FI +Y+ L + E++ +S+AGRV + R
Sbjct: 61 RLRN--IESLRESGINPYPHKFFITMSIPEFISRYAHLNTGEFPEDIDMSLAGRVISKRA 118
Query: 105 SGTKLMFYDLRGEGLKIQVMANARMYQSEE-EFASDLVKIKRGDIIGVTGSPGKTKKGEL 163
S +KL FY+L G G ++QV+A+AR + +F++ +KRGDIIGV G PGK+K+GEL
Sbjct: 119 SSSKLYFYELLGGGARVQVLASARDSDVDAVQFSNYQSGVKRGDIIGVRGYPGKSKRGEL 178
Query: 164 SIIPKKLTLLSPCLHMLPHM--------------------------------HFGVKDKE 191
SI K +L+PCLHMLP + ++D+E
Sbjct: 179 SIFAKPFIVLAPCLHMLPRRLTSSIVDETRTQNFQGITAYDTWTPGDLRNPESYVLRDQE 238
Query: 192 TRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFV 251
TR+RQRYLDLM+N +R F RA+II+Y+R +LD+L FLEVETP MN+ AGGA+A+PF+
Sbjct: 239 TRYRQRYLDLMMNPEVRALFRTRARIISYIRSFLDNLEFLEVETPSMNLTAGGASARPFI 298
Query: 252 THHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAY 311
THHN+L+ +L +R++PELYLK LVVGG DRVYE+G+ FRNEG+DLTH+PEFT CE YMAY
Sbjct: 299 THHNELDTELLIRVSPELYLKKLVVGGFDRVYELGKHFRNEGMDLTHSPEFTMCELYMAY 358
Query: 312 ADYNDLMHLTEDLISGRKED 331
ADYNDLM LTE L+SG +D
Sbjct: 359 ADYNDLMDLTEQLLSGMVKD 378
Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/307 (36%), Positives = 156/307 (50%), Gaps = 94/307 (30%)
Query: 334 RPCVMANARMYQSEE-EFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLH 392
R V+A+AR + +F++ +KRGDIIGV G PGK+K+GELSI K +L+PCLH
Sbjct: 134 RVQVLASARDSDVDAVQFSNYQSGVKRGDIIGVRGYPGKSKRGELSIFAKPFIVLAPCLH 193
Query: 393 MLPHM--------------------------------HFGVKDKETRFRQRYLDLMINER 420
MLP + ++D+ETR+RQRYLDLM+N
Sbjct: 194 MLPRRLTSSIVDETRTQNFQGITAYDTWTPGDLRNPESYVLRDQETRYRQRYLDLMMNPE 253
Query: 421 IRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIA 480
+R F RA+II+Y+R +LD+L FLEVETP MN+ AGGA+A+PF+THHN+L+ +L +R++
Sbjct: 254 VRALFRTRARIISYIRSFLDNLEFLEVETPSMNLTAGGASARPFITHHNELDTELLIRVS 313
Query: 481 P--------------------------------------ELYL----------------- 485
P ELY+
Sbjct: 314 PELYLKKLVVGGFDRVYELGKHFRNEGMDLTHSPEFTMCELYMAYADYNDLMDLTEQLLS 373
Query: 486 ---KSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPE 542
K GSYK+ YH +G ++ P+EIDFTPPFR++ M LE + +P + +
Sbjct: 374 GMVKDLTGSYKIRYHANGLDN-EPIEIDFTPPFRKIDMLSELEKVANISIPR--DLSSES 430
Query: 543 ANKFLSD 549
ANK L D
Sbjct: 431 ANKHLVD 437
>sp|Q8SS56|SYKC_ENCCU Probable lysine--tRNA ligase, cytoplasmic OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU04_0580 PE=3 SV=1
Length = 440
Score = 287 bits (735), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 135/234 (57%), Positives = 177/234 (75%), Gaps = 10/234 (4%)
Query: 98 RVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK 157
R+HA + F+ + G +QV+ + + E+ A L +RGD++G TG+PG+
Sbjct: 4 RLHA------RFCFFVVTSNGESLQVVVDTK-EAGREQMAKFL---RRGDVVGFTGNPGR 53
Query: 158 TKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQI 217
T+ E S+ + +L+PCL +P HFG+KD ET +R+RY+DL+IN R++F RAQI
Sbjct: 54 TRTLEASVFATDIIVLTPCLRTIPTEHFGLKDPETIYRKRYMDLLINRESRNRFQKRAQI 113
Query: 218 IAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG 277
I Y+R +LDS GFLEVETPMMN+I GGA AKPF+THHN+L +DLYMR++PELYLK LVVG
Sbjct: 114 IGYIRSFLDSRGFLEVETPMMNLIPGGAAAKPFITHHNELKLDLYMRVSPELYLKKLVVG 173
Query: 278 GLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKED 331
GL+RVYE+G+QFRNEGIDLTHNPEFT+CEFYMAYADYNDLM +TE+LISG E+
Sbjct: 174 GLERVYEIGKQFRNEGIDLTHNPEFTSCEFYMAYADYNDLMEMTEELISGMVEN 227
Score = 179 bits (455), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 104/130 (80%)
Query: 357 IKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLM 416
++RGD++G TG+PG+T+ E S+ + +L+PCL +P HFG+KD ET +R+RY+DL+
Sbjct: 39 LRRGDVVGFTGNPGRTRTLEASVFATDIIVLTPCLRTIPTEHFGLKDPETIYRKRYMDLL 98
Query: 417 INERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLY 476
IN R++F RAQII Y+R +LDS GFLEVETPMMN+I GGA AKPF+THHN+L +DLY
Sbjct: 99 INRESRNRFQKRAQIIGYIRSFLDSRGFLEVETPMMNLIPGGAAAKPFITHHNELKLDLY 158
Query: 477 MRIAPELYLK 486
MR++PELYLK
Sbjct: 159 MRVSPELYLK 168
>sp|C4V8R9|SYKC_NOSCE Probable lysine--tRNA ligase, cytoplasmic OS=Nosema ceranae (strain
BRL01) GN=NCER_100909 PE=3 SV=1
Length = 514
Score = 283 bits (723), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 134/286 (46%), Positives = 200/286 (69%), Gaps = 7/286 (2%)
Query: 42 EFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHA 101
EF++ R V + + YPHK+ V +D I + D + L+ V + AGR+
Sbjct: 16 EFYKNRLLTVTEQLKDNVQVYPHKYEVNYRFKD-IFTFKDASEED-LKKVKVQSAGRILN 73
Query: 102 IRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKG 161
R + F+ + E IQ++ +A++ ++++ ++ IKRGDI+G +G G+TK
Sbjct: 74 FRIHA-RYSFFQVMSEDFTIQLVVDAQVLENKDIISN----IKRGDIVGFSGVLGRTKTK 128
Query: 162 ELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221
E S+ K+L++L+PCL +P ++G+KD E +R+RYLDL+IN+ +++FI R II ++
Sbjct: 129 EFSVFIKELSILTPCLRTIPTDYYGLKDPEIIYRKRYLDLLINKESKNRFIQRTNIIKFI 188
Query: 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDR 281
R+YLD F+EVETP++N+I GA AKPF THHN+L M+L++RIAPELYLK LV+GG+DR
Sbjct: 189 RKYLDDKDFVEVETPLLNIIPTGAAAKPFTTHHNELKMNLFLRIAPELYLKKLVIGGMDR 248
Query: 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
VYE+G+ FRNEGIDLTHNPEFT CEFYMAYADYND+M++ E++++G
Sbjct: 249 VYEIGKLFRNEGIDLTHNPEFTACEFYMAYADYNDMMNMAEEMLNG 294
Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/235 (37%), Positives = 125/235 (53%), Gaps = 59/235 (25%)
Query: 357 IKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLM 416
IKRGDI+G +G G+TK E S+ K+L++L+PCL +P ++G+KD E +R+RYLDL+
Sbjct: 110 IKRGDIVGFSGVLGRTKTKEFSVFIKELSILTPCLRTIPTDYYGLKDPEIIYRKRYLDLL 169
Query: 417 INERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLY 476
IN+ +++FI R II ++R+YLD F+EVETP++N+I GA AKPF THHN+L M+L+
Sbjct: 170 INKESKNRFIQRTNIIKFIRKYLDDKDFVEVETPLLNIIPTGAAAKPFTTHHNELKMNLF 229
Query: 477 MRI--------------------------------------APELYL------------- 485
+RI A E Y+
Sbjct: 230 LRIAPELYLKKLVIGGMDRVYEIGKLFRNEGIDLTHNPEFTACEFYMAYADYNDMMNMAE 289
Query: 486 -------KSTHGSYKVTYHPDGPESG-SPVEIDFTPPFRRLHMFPALEAALGVKL 532
K HGS K+ Y P+ E PVEI+F PF R HM L +G+KL
Sbjct: 290 EMLNGMCKYLHGSEKIVYAPNKREKEVKPVEINFARPFARFHMLEELSKVVGIKL 344
>sp|A9CS74|SYKC_ENTBH Probable lysine--tRNA ligase, cytoplasmic OS=Enterocytozoon
bieneusi (strain H348) GN=EBI_25548 PE=3 SV=1
Length = 518
Score = 270 bits (691), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 130/287 (45%), Positives = 196/287 (68%), Gaps = 5/287 (1%)
Query: 43 FFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAI 102
++ R +++++ G + YPHKF ++ +D ++ + N+++ + GRV
Sbjct: 15 YYFQRREQMQELQSLGINVYPHKFYFNNTFQDVFTA-AETCSSNEKTNISVELVGRVIRA 73
Query: 103 R-ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVK-IKRGDIIGVTGSPGKTKK 160
R S T FYD++ + ++Q++ N + E A +V I+RGDIIG G G+TK
Sbjct: 74 RIHSMTN--FYDVKKDNDELQIVYNKNLQGKENPIAIKIVDCIRRGDIIGFKGIVGRTKT 131
Query: 161 GELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAY 220
GE+S+ ++ +LSPCL P + + E +R R++DL++N+ R++FI R++II +
Sbjct: 132 GEISVFAHEIQILSPCLRAFPSEKNLITNPELIYRHRHIDLLVNQDSRNRFITRSKIIQH 191
Query: 221 VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD 280
+R Y + +GFLEVETP+MN GGA+A+PF+THHN+L +DLY+R+APEL+LK LVVGGL+
Sbjct: 192 IREYFNKIGFLEVETPIMNNKVGGASARPFLTHHNELKIDLYLRVAPELFLKQLVVGGLE 251
Query: 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
RV+E+G+ FRNEGIDLTHNPEFT EFYMAYADYNDLM + E+L+SG
Sbjct: 252 RVFEIGKNFRNEGIDLTHNPEFTAIEFYMAYADYNDLMCIVEELLSG 298
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 109/160 (68%), Gaps = 1/160 (0%)
Query: 329 KEDRNRPCVMANARMYQSEEEFASDLVK-IKRGDIIGVTGSPGKTKKGELSIIPKKLTLL 387
K+D + ++ N + E A +V I+RGDIIG G G+TK GE+S+ ++ +L
Sbjct: 85 KKDNDELQIVYNKNLQGKENPIAIKIVDCIRRGDIIGFKGIVGRTKTGEISVFAHEIQIL 144
Query: 388 SPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEV 447
SPCL P + + E +R R++DL++N+ R++FI R++II ++R Y + +GFLEV
Sbjct: 145 SPCLRAFPSEKNLITNPELIYRHRHIDLLVNQDSRNRFITRSKIIQHIREYFNKIGFLEV 204
Query: 448 ETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKS 487
ETP+MN GGA+A+PF+THHN+L +DLY+R+APEL+LK
Sbjct: 205 ETPIMNNKVGGASARPFLTHHNELKIDLYLRVAPELFLKQ 244
>sp|A0L6F7|SYK_MAGSM Lysine--tRNA ligase OS=Magnetococcus sp. (strain MC-1) GN=lysS PE=3
SV=1
Length = 501
Score = 258 bits (659), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 135/304 (44%), Positives = 190/304 (62%), Gaps = 2/304 (0%)
Query: 30 LNTNYTQQCLTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLE 89
+ TN Q ++ R +E ++E G +PYP F L + D LE
Sbjct: 1 METNTMSQQEENQQIAARKVKLEALREAGVNPYPSGFKPDIDLASVSRANGNEMDPATLE 60
Query: 90 NVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDII 149
V++ VAGR+ +R G KL F L+ E ++Q+ A R E +++ KI+ GDI+
Sbjct: 61 RVSVKVAGRIMLLRNFG-KLTFATLQDESGRLQISAQ-RDVVGAELYSTVFRKIEVGDIL 118
Query: 150 GVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRH 209
GV G +TK GEL++ ++ LLS + LP G++D ETR+RQRY+DL++N +R
Sbjct: 119 GVEGHLFRTKVGELTVQVERFELLSKAVRPLPEKFHGLEDVETRYRQRYVDLIVNTEVRE 178
Query: 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPEL 269
F R+++I+ +R++++ GFLEVETPMM+ I GGATA+PFVTHHN L+ DLY+RIAPEL
Sbjct: 179 IFKTRSRVISRIRQFMEHRGFLEVETPMMHPIPGGATARPFVTHHNALDTDLYLRIAPEL 238
Query: 270 YLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRK 329
YLK L+VGG +RV+E+ R FRNEG+ HNPEFT EFY AY DY +LM TE L+
Sbjct: 239 YLKRLIVGGFERVFEINRNFRNEGLSPRHNPEFTMMEFYQAYTDYRELMDFTEALVQDVV 298
Query: 330 EDRN 333
+D N
Sbjct: 299 KDVN 302
Score = 152 bits (384), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 103/139 (74%)
Query: 348 EEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETR 407
E +++ KI+ GDI+GV G +TK GEL++ ++ LLS + LP G++D ETR
Sbjct: 103 ELYSTVFRKIEVGDILGVEGHLFRTKVGELTVQVERFELLSKAVRPLPEKFHGLEDVETR 162
Query: 408 FRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTH 467
+RQRY+DL++N +R F R+++I+ +R++++ GFLEVETPMM+ I GGATA+PFVTH
Sbjct: 163 YRQRYVDLIVNTEVREIFKTRSRVISRIRQFMEHRGFLEVETPMMHPIPGGATARPFVTH 222
Query: 468 HNDLNMDLYMRIAPELYLK 486
HN L+ DLY+RIAPELYLK
Sbjct: 223 HNALDTDLYLRIAPELYLK 241
>sp|Q9X231|SYK_THEMA Lysine--tRNA ligase OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=lysS PE=3 SV=1
Length = 502
Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 132/289 (45%), Positives = 188/289 (65%), Gaps = 6/289 (2%)
Query: 39 LTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGR 98
+ EF R +++++ G PYP+KF + + EKY L +VLE+ LS AGR
Sbjct: 1 MLKEFKEQRLKEIQELRSMGIEPYPYKFEKELTAREIREKYDYLQAGEVLESEKLSFAGR 60
Query: 99 VHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVK--IKRGDIIGVTGSPG 156
V +IR G K F+ ++ + +IQ A E+ DL K +K GD +GV G P
Sbjct: 61 VMSIRHHG-KTAFFHMKDDTGRIQAYIKADSVGKEK---MDLFKRHVKIGDFVGVRGFPF 116
Query: 157 KTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQ 216
K+K GEL+I ++ TLLS L LP G+KDKE +RQRYL+L++N+ +F R +
Sbjct: 117 KSKTGELTIYVQEYTLLSKALRPLPEKWHGIKDKEIIYRQRYLELIVNDEAIERFKKRFK 176
Query: 217 IIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVV 276
+ +R +L+S GF+EVETP+++ + GGA A+PFVTH N ++D+Y+RIAPELYLK L+V
Sbjct: 177 AVRVIREFLNSRGFIEVETPILHYVTGGAEARPFVTHLNVFDIDMYLRIAPELYLKRLIV 236
Query: 277 GGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLI 325
GG +++YE+G+ FRNEGI H+PEFT+ E Y AYADYND+M LTE+LI
Sbjct: 237 GGFEKIYEIGKNFRNEGISYKHSPEFTSIEIYQAYADYNDMMDLTEELI 285
Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 125/238 (52%), Gaps = 53/238 (22%)
Query: 353 DLVK--IKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQ 410
DL K +K GD +GV G P K+K GEL+I ++ TLLS L LP G+KDKE +RQ
Sbjct: 97 DLFKRHVKIGDFVGVRGFPFKSKTGELTIYVQEYTLLSKALRPLPEKWHGIKDKEIIYRQ 156
Query: 411 RYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHND 470
RYL+L++N+ +F R + + +R +L+S GF+EVETP+++ + GGA A+PFVTH N
Sbjct: 157 RYLELIVNDEAIERFKKRFKAVRVIREFLNSRGFIEVETPILHYVTGGAEARPFVTHLNV 216
Query: 471 LNMDLYMRIAPELYLKS-THGSYKVTY------------HPDGPE--------------- 502
++D+Y+RIAPELYLK G ++ Y + PE
Sbjct: 217 FDIDMYLRIAPELYLKRLIVGGFEKIYEIGKNFRNEGISYKHSPEFTSIEIYQAYADYND 276
Query: 503 ----------------------SGSPVEIDFTPPFRRLHMFPALEAALGVK-LPNPTE 537
S EIDFTPP++R+ M L+ LGV L +P E
Sbjct: 277 MMDLTEELIVEVVKRTCGTLKISYQGKEIDFTPPWKRVRMRDFLKEKLGVDILEDPDE 334
>sp|A5ILE6|SYK_THEP1 Lysine--tRNA ligase OS=Thermotoga petrophila (strain RKU-1 / ATCC
BAA-488 / DSM 13995) GN=lysS PE=3 SV=1
Length = 502
Score = 255 bits (651), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 131/289 (45%), Positives = 188/289 (65%), Gaps = 6/289 (2%)
Query: 39 LTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGR 98
+ EF R +++++ G PYP+KF + + EKY L +VLE+ LS AGR
Sbjct: 1 MLKEFKEQRLNEIQELRSMGIEPYPYKFEKELTAREIREKYDYLQAGEVLESEKLSFAGR 60
Query: 99 VHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVK--IKRGDIIGVTGSPG 156
V +IR G K F+ ++ + +IQ A E+ DL K +K GD IGV G P
Sbjct: 61 VMSIRHHG-KTAFFHMKDDTGRIQAYVRADSVGKEK---MDLFKRHVKIGDFIGVRGFPF 116
Query: 157 KTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQ 216
K+K GEL+I ++ TLLS L LP G+KDKE +RQRYL+L++++ +F R +
Sbjct: 117 KSKTGELTIYVQEYTLLSKALRPLPEKWHGIKDKEIIYRQRYLELIVSDEAIERFRKRFK 176
Query: 217 IIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVV 276
+ +R +L+S GF+EVETP+++ + GGA A+PFVTH N ++D+Y+RIAPELYLK L++
Sbjct: 177 AVQVIREFLNSRGFIEVETPILHYVTGGAEARPFVTHLNVFDIDMYLRIAPELYLKRLII 236
Query: 277 GGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLI 325
GG +++YE+G+ FRNEGI H+PEFT+ E Y AYADYND+M LTE+LI
Sbjct: 237 GGFEKIYEIGKNFRNEGISYKHSPEFTSIEIYQAYADYNDMMDLTEELI 285
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 125/238 (52%), Gaps = 53/238 (22%)
Query: 353 DLVK--IKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQ 410
DL K +K GD IGV G P K+K GEL+I ++ TLLS L LP G+KDKE +RQ
Sbjct: 97 DLFKRHVKIGDFIGVRGFPFKSKTGELTIYVQEYTLLSKALRPLPEKWHGIKDKEIIYRQ 156
Query: 411 RYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHND 470
RYL+L++++ +F R + + +R +L+S GF+EVETP+++ + GGA A+PFVTH N
Sbjct: 157 RYLELIVSDEAIERFRKRFKAVQVIREFLNSRGFIEVETPILHYVTGGAEARPFVTHLNV 216
Query: 471 LNMDLYMRIAPELYLKS-THGSYKVTY------------HPDGPE--------------- 502
++D+Y+RIAPELYLK G ++ Y + PE
Sbjct: 217 FDIDMYLRIAPELYLKRLIIGGFEKIYEIGKNFRNEGISYKHSPEFTSIEIYQAYADYND 276
Query: 503 ----------------------SGSPVEIDFTPPFRRLHMFPALEAALGVK-LPNPTE 537
S EIDFTPP++R+ M L+ LGV L +P E
Sbjct: 277 MMDLTEELIVEVVKRTCGTLKISYQGKEIDFTPPWKRVRMRDFLKEKLGVDILEDPDE 334
>sp|B1LAX6|SYK_THESQ Lysine--tRNA ligase OS=Thermotoga sp. (strain RQ2) GN=lysS PE=3
SV=1
Length = 502
Score = 255 bits (651), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 131/289 (45%), Positives = 188/289 (65%), Gaps = 6/289 (2%)
Query: 39 LTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGR 98
+ EF R +++++ G PYP+KF + + EKY L +VLE+ LS AGR
Sbjct: 1 MLKEFKEQRLNEIQELRSMGIEPYPYKFEKELTAREIREKYDYLQAGEVLESEKLSFAGR 60
Query: 99 VHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVK--IKRGDIIGVTGSPG 156
V +IR G K F+ ++ + +IQ A E+ DL K +K GD IGV G P
Sbjct: 61 VMSIRHHG-KTAFFHMKDDTGRIQAYVRADSVGKEK---MDLFKRHVKIGDFIGVRGFPF 116
Query: 157 KTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQ 216
K+K GEL+I ++ TLLS L LP G+KDKE +RQRYL+L++++ +F R +
Sbjct: 117 KSKTGELTIYVQEYTLLSKALRPLPEKWHGIKDKEIIYRQRYLELIVSDEAIERFRKRFK 176
Query: 217 IIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVV 276
+ +R +L+S GF+EVETP+++ + GGA A+PFVTH N ++D+Y+RIAPELYLK L++
Sbjct: 177 AVQVIREFLNSRGFIEVETPILHYVTGGAEARPFVTHLNVFDIDMYLRIAPELYLKRLII 236
Query: 277 GGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLI 325
GG +++YE+G+ FRNEGI H+PEFT+ E Y AYADYND+M LTE+LI
Sbjct: 237 GGFEKIYEIGKNFRNEGISYKHSPEFTSIEIYQAYADYNDMMDLTEELI 285
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 125/238 (52%), Gaps = 53/238 (22%)
Query: 353 DLVK--IKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQ 410
DL K +K GD IGV G P K+K GEL+I ++ TLLS L LP G+KDKE +RQ
Sbjct: 97 DLFKRHVKIGDFIGVRGFPFKSKTGELTIYVQEYTLLSKALRPLPEKWHGIKDKEIIYRQ 156
Query: 411 RYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHND 470
RYL+L++++ +F R + + +R +L+S GF+EVETP+++ + GGA A+PFVTH N
Sbjct: 157 RYLELIVSDEAIERFRKRFKAVQVIREFLNSRGFIEVETPILHYVTGGAEARPFVTHLNV 216
Query: 471 LNMDLYMRIAPELYLKS-THGSYKVTY------------HPDGPE--------------- 502
++D+Y+RIAPELYLK G ++ Y + PE
Sbjct: 217 FDIDMYLRIAPELYLKRLIIGGFEKIYEIGKNFRNEGISYKHSPEFTSIEIYQAYADYND 276
Query: 503 ----------------------SGSPVEIDFTPPFRRLHMFPALEAALGVK-LPNPTE 537
S EIDFTPP++R+ M L+ LGV L +P E
Sbjct: 277 MMDLTEELIVEVVKRTCGTLKISYQGKEIDFTPPWKRVRMRDFLKEKLGVDILEDPDE 334
>sp|Q3A9M2|SYK_CARHZ Lysine--tRNA ligase OS=Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008) GN=lysS PE=3 SV=1
Length = 488
Score = 251 bits (642), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 184/290 (63%), Gaps = 17/290 (5%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVH 100
+E ++R + ++++ G PY KF T + ++ ++ + L D T+ +AGR+
Sbjct: 7 NELVKVRLEKLSELRKMGIEPYGGKFERTHTAKEILDNFEQLVDK------TVKIAGRIM 60
Query: 101 AIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASD----LVKIKRGDIIGVTGSPG 156
A R G K F ++ KIQ+ Y + E D K+ GDIIGVTG
Sbjct: 61 AKRGHG-KASFAHIQDMSGKIQI------YARQNELGIDAYKLFEKLDIGDIIGVTGHVF 113
Query: 157 KTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQ 216
KT+KGE+++ +L+ L LP G+ D E R+RQRY+DL++N +R FI+R++
Sbjct: 114 KTQKGEITVWLSSFEILAKSLRPLPEKWHGLTDVELRYRQRYVDLIVNPEVRETFILRSR 173
Query: 217 IIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVV 276
I+ +R +LD GFLEVETPMM+ IAGGA A+PF+THHN L+M LY+RIAPELYLK L+V
Sbjct: 174 IVKTIREFLDQKGFLEVETPMMHPIAGGAAARPFITHHNALDMKLYLRIAPELYLKRLLV 233
Query: 277 GGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
GG ++VYE+ R FRNEGI HNPEFT E Y AYADY+D+M +TE+LI+
Sbjct: 234 GGFEKVYEINRNFRNEGISTKHNPEFTMLELYQAYADYHDMMDITEELIT 283
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 114/187 (60%), Gaps = 5/187 (2%)
Query: 342 RMYQSEEEFASD----LVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHM 397
++Y + E D K+ GDIIGVTG KT+KGE+++ +L+ L LP
Sbjct: 81 QIYARQNELGIDAYKLFEKLDIGDIIGVTGHVFKTQKGEITVWLSSFEILAKSLRPLPEK 140
Query: 398 HFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAG 457
G+ D E R+RQRY+DL++N +R FI+R++I+ +R +LD GFLEVETPMM+ IAG
Sbjct: 141 WHGLTDVELRYRQRYVDLIVNPEVRETFILRSRIVKTIREFLDQKGFLEVETPMMHPIAG 200
Query: 458 GATAKPFVTHHNDLNMDLYMRIAPELYLKSTH-GSYKVTYHPDGPESGSPVEIDFTPPFR 516
GA A+PF+THHN L+M LY+RIAPELYLK G ++ Y + + P F
Sbjct: 201 GAAARPFITHHNALDMKLYLRIAPELYLKRLLVGGFEKVYEINRNFRNEGISTKHNPEFT 260
Query: 517 RLHMFPA 523
L ++ A
Sbjct: 261 MLELYQA 267
>sp|P73443|SYK_SYNY3 Lysine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=lysS PE=3 SV=1
Length = 510
Score = 249 bits (636), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 132/308 (42%), Positives = 196/308 (63%), Gaps = 13/308 (4%)
Query: 47 RSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESG 106
R EQ+++ G +PY + + +T +D E Y DL + + + ++ +++AGR+ A R G
Sbjct: 17 RLEKAEQLRQLGLNPYAYTWEITHQAQDLQETYRDLSNGEEV-DLKVAIAGRILARRVMG 75
Query: 107 TKLMFYDLRGEGLKIQV-MANARMYQSEEEFASDLVKIKR----GDIIGVTGSPGKTKKG 161
KL F+ L+ E IQ+ + R+ + E + +K+ GDI+GVTG+ +T+KG
Sbjct: 76 -KLAFFTLQDESGTIQLYLEKQRLTEHMPELENAFNLLKKITDVGDILGVTGTLKRTEKG 134
Query: 162 ELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221
ELS+ + +L+ L LP G+ D E R+RQRY+DL++N +R F RAQI A +
Sbjct: 135 ELSVYVQTYAVLTKSLLPLPDKWHGLTDTEKRYRQRYVDLIVNPTVRQTFRRRAQITAAI 194
Query: 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDR 281
RRYLD GF+E+ETP++ +GGA A+PF+THHN L M LY+RIA EL+LK LVVGG ++
Sbjct: 195 RRYLDKQGFIEIETPVLQGESGGAEARPFITHHNTLGMPLYLRIATELHLKRLVVGGFEK 254
Query: 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDRNRPCVMANA 341
V+E+GR FRNEG+ HNPEFT+ E Y AY DYN++M LTE L++ + V+
Sbjct: 255 VFELGRIFRNEGVSTRHNPEFTSIEVYQAYVDYNEMMALTEALVTTAAQ-----AVLGTL 309
Query: 342 RM-YQSEE 348
++ YQ EE
Sbjct: 310 KITYQGEE 317
Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 91/127 (71%)
Query: 360 GDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINE 419
GDI+GVTG+ +T+KGELS+ + +L+ L LP G+ D E R+RQRY+DL++N
Sbjct: 119 GDILGVTGTLKRTEKGELSVYVQTYAVLTKSLLPLPDKWHGLTDTEKRYRQRYVDLIVNP 178
Query: 420 RIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI 479
+R F RAQI A +RRYLD GF+E+ETP++ +GGA A+PF+THHN L M LY+RI
Sbjct: 179 TVRQTFRRRAQITAAIRRYLDKQGFIEIETPVLQGESGGAEARPFITHHNTLGMPLYLRI 238
Query: 480 APELYLK 486
A EL+LK
Sbjct: 239 ATELHLK 245
>sp|B2J384|SYK_NOSP7 Lysine--tRNA ligase OS=Nostoc punctiforme (strain ATCC 29133 / PCC
73102) GN=lysS PE=3 SV=1
Length = 561
Score = 249 bits (636), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 130/286 (45%), Positives = 187/286 (65%), Gaps = 8/286 (2%)
Query: 47 RSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESG 106
R VEQ+K+ G +PY +++ T E+++DL + + ++ +++AGR+ A R G
Sbjct: 10 RLEKVEQLKQLGTNPYAYRWESTHHAAQLQEQFADLASGEEV-DLEVAIAGRIMARRVFG 68
Query: 107 TKLMFYDLRGEGLKIQV-MANARMYQSEEEFASDLVK-----IKRGDIIGVTGSPGKTKK 160
KL F+ L+ E IQ+ + R+ +S + +D GDI+GV G+ +T+K
Sbjct: 69 -KLAFFTLQDETGTIQLYLDKNRIQESMADIDADAFNHLKQLTDAGDILGVKGTIKRTEK 127
Query: 161 GELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAY 220
GELS+ K+ T+L+ L LP G+ D R+RQRY+DL++N +R F RAQI A
Sbjct: 128 GELSVYVKQYTILTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNPEVRQTFRRRAQITAG 187
Query: 221 VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD 280
+RRYL+ FLE+ETP++ AGGA A+PF+THHN L M+LY+RIA EL+LK L+VGG +
Sbjct: 188 IRRYLEQRDFLEIETPVLQSEAGGADARPFITHHNTLEMELYLRIATELHLKRLIVGGFE 247
Query: 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
+V+E+GR FRNEGI HNPEFTT E Y AYADYND+M LTE +I+
Sbjct: 248 KVFELGRIFRNEGISTRHNPEFTTIEVYQAYADYNDMMALTEGIIT 293
Score = 142 bits (357), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 91/127 (71%)
Query: 360 GDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINE 419
GDI+GV G+ +T+KGELS+ K+ T+L+ L LP G+ D R+RQRY+DL++N
Sbjct: 113 GDILGVKGTIKRTEKGELSVYVKQYTILTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNP 172
Query: 420 RIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI 479
+R F RAQI A +RRYL+ FLE+ETP++ AGGA A+PF+THHN L M+LY+RI
Sbjct: 173 EVRQTFRRRAQITAGIRRYLEQRDFLEIETPVLQSEAGGADARPFITHHNTLEMELYLRI 232
Query: 480 APELYLK 486
A EL+LK
Sbjct: 233 ATELHLK 239
>sp|P0A8N5|SYK2_ECOLI Lysine--tRNA ligase, heat inducible OS=Escherichia coli (strain
K12) GN=lysU PE=1 SV=2
Length = 505
Score = 249 bits (636), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 135/284 (47%), Positives = 187/284 (65%), Gaps = 6/284 (2%)
Query: 44 FRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLE--NVTLSVAGRVHA 101
R R + +++QG +P+ F + + E++ D D Q LE N+ +SVAGR+
Sbjct: 19 LRNRREKLAALRQQGV-AFPNDFRRDHTSDQLHEEF-DAKDNQELESLNIEVSVAGRMMT 76
Query: 102 IRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKG 161
R G K F L+ G +IQ+ AR E + K GDIIG G+ KT+ G
Sbjct: 77 RRIMG-KASFVTLQDVGGRIQLYV-ARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTG 134
Query: 162 ELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221
ELSI +L LL+ L LP G++D+E R+RQRYLDL+ N++ R F+VR++I+A +
Sbjct: 135 ELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAI 194
Query: 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDR 281
R+++ + GF+EVETPMM +I GGA+A+PF+THHN L++D+Y+RIAPELYLK LVVGG +R
Sbjct: 195 RQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFER 254
Query: 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLI 325
V+E+ R FRNEGI + HNPEFT E YMAYADY+DL+ LTE L
Sbjct: 255 VFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLF 298
Score = 155 bits (393), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 113/169 (66%), Gaps = 1/169 (0%)
Query: 356 KIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDL 415
K GDIIG G+ KT+ GELSI +L LL+ L LP G++D+E R+RQRYLDL
Sbjct: 115 KWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDL 174
Query: 416 MINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDL 475
+ N++ R F+VR++I+A +R+++ + GF+EVETPMM +I GGA+A+PF+THHN L++D+
Sbjct: 175 IANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDM 234
Query: 476 YMRIAPELYLKS-THGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPA 523
Y+RIAPELYLK G ++ + + + + P F + ++ A
Sbjct: 235 YLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMA 283
>sp|P0A8N6|SYK2_ECO57 Lysine--tRNA ligase, heat inducible OS=Escherichia coli O157:H7
GN=lysU PE=3 SV=2
Length = 505
Score = 249 bits (636), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 135/284 (47%), Positives = 187/284 (65%), Gaps = 6/284 (2%)
Query: 44 FRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLE--NVTLSVAGRVHA 101
R R + +++QG +P+ F + + E++ D D Q LE N+ +SVAGR+
Sbjct: 19 LRNRREKLAALRQQGV-AFPNDFRRDHTSDQLHEEF-DAKDNQELESLNIEVSVAGRMMT 76
Query: 102 IRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKG 161
R G K F L+ G +IQ+ AR E + K GDIIG G+ KT+ G
Sbjct: 77 RRIMG-KASFVTLQDVGGRIQLYV-ARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTG 134
Query: 162 ELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221
ELSI +L LL+ L LP G++D+E R+RQRYLDL+ N++ R F+VR++I+A +
Sbjct: 135 ELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAI 194
Query: 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDR 281
R+++ + GF+EVETPMM +I GGA+A+PF+THHN L++D+Y+RIAPELYLK LVVGG +R
Sbjct: 195 RQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFER 254
Query: 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLI 325
V+E+ R FRNEGI + HNPEFT E YMAYADY+DL+ LTE L
Sbjct: 255 VFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLF 298
Score = 155 bits (393), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 113/169 (66%), Gaps = 1/169 (0%)
Query: 356 KIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDL 415
K GDIIG G+ KT+ GELSI +L LL+ L LP G++D+E R+RQRYLDL
Sbjct: 115 KWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDL 174
Query: 416 MINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDL 475
+ N++ R F+VR++I+A +R+++ + GF+EVETPMM +I GGA+A+PF+THHN L++D+
Sbjct: 175 IANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDM 234
Query: 476 YMRIAPELYLKS-THGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPA 523
Y+RIAPELYLK G ++ + + + + P F + ++ A
Sbjct: 235 YLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMA 283
>sp|Q8FAT5|SYK2_ECOL6 Lysine--tRNA ligase, heat inducible OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=lysU PE=3 SV=3
Length = 505
Score = 249 bits (635), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 135/284 (47%), Positives = 187/284 (65%), Gaps = 6/284 (2%)
Query: 44 FRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLE--NVTLSVAGRVHA 101
R R + +++QG +P+ F + + E++ D D Q LE N+ +SVAGR+
Sbjct: 19 LRNRREKLAALRQQGV-AFPNDFRRDHTSDQLHEEF-DAKDNQELESLNIEVSVAGRMMT 76
Query: 102 IRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKG 161
R G K F L+ G +IQ+ AR E + K GDIIG G+ KT+ G
Sbjct: 77 RRIMG-KASFVTLQDVGGRIQLYV-ARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTG 134
Query: 162 ELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221
ELSI +L LL+ L LP G++D+E R+RQRYLDL+ N++ R F+VR++I+A +
Sbjct: 135 ELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAI 194
Query: 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDR 281
R+++ + GF+EVETPMM +I GGA+A+PF+THHN L++D+Y+RIAPELYLK LVVGG +R
Sbjct: 195 RQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFER 254
Query: 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLI 325
V+E+ R FRNEGI + HNPEFT E YMAYADY+DL+ LTE L
Sbjct: 255 VFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLF 298
Score = 155 bits (393), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 113/169 (66%), Gaps = 1/169 (0%)
Query: 356 KIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDL 415
K GDIIG G+ KT+ GELSI +L LL+ L LP G++D+E R+RQRYLDL
Sbjct: 115 KWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDL 174
Query: 416 MINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDL 475
+ N++ R F+VR++I+A +R+++ + GF+EVETPMM +I GGA+A+PF+THHN L++D+
Sbjct: 175 IANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDM 234
Query: 476 YMRIAPELYLKS-THGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPA 523
Y+RIAPELYLK G ++ + + + + P F + ++ A
Sbjct: 235 YLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMA 283
>sp|O87821|SYK_RHIME Lysine--tRNA ligase OS=Rhizobium meliloti (strain 1021) GN=lysS
PE=3 SV=2
Length = 498
Score = 249 bits (635), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 138/294 (46%), Positives = 193/294 (65%), Gaps = 10/294 (3%)
Query: 32 TNYTQQC-LTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDL-PDAQVLE 89
T+ TQ L+S+ +RS ++ +++Q YP F T + + EKY+ L PD + E
Sbjct: 2 TDKTQAAGLSSDATEVRSQKLDLLRQQIGDVYPAHFHRTLTNAELAEKYAGLEPDTESGE 61
Query: 90 NVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDII 149
VT VAGRV + R SG MF DL KIQ+ ++ + EE + L I GDII
Sbjct: 62 TVT--VAGRVFSSRNSG---MFMDLHDASGKIQIFSHKDT--APEEARALLPMIDLGDII 114
Query: 150 GVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRH 209
GVTG +TK+GEL++ K++T+L L +P + G+ D ETR+R+RYLD+M+NE +
Sbjct: 115 GVTGEVRRTKRGELTVNAKEITMLCKSLLPMPEKYHGLADIETRYRKRYLDIMVNEESKL 174
Query: 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPEL 269
+F R++I++ +RR+L+ GF+EVETPM+ I GGATA+PF THHN L +D+Y+RIAPEL
Sbjct: 175 RFQQRSRIVSSLRRFLEDEGFMEVETPMLQPIYGGATAEPFKTHHNTLKLDMYLRIAPEL 234
Query: 270 YLKMLVVGGL-DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTE 322
YLK ++V GL D+V+E+ R FRNEG+ HNPEFT E Y AYADY D+M L E
Sbjct: 235 YLKRILVSGLTDKVFEINRNFRNEGVSTRHNPEFTMMECYWAYADYEDVMGLVE 288
Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 73/139 (52%), Positives = 103/139 (74%)
Query: 348 EEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETR 407
EE + L I GDIIGVTG +TK+GEL++ K++T+L L +P + G+ D ETR
Sbjct: 99 EEARALLPMIDLGDIIGVTGEVRRTKRGELTVNAKEITMLCKSLLPMPEKYHGLADIETR 158
Query: 408 FRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTH 467
+R+RYLD+M+NE + +F R++I++ +RR+L+ GF+EVETPM+ I GGATA+PF TH
Sbjct: 159 YRKRYLDIMVNEESKLRFQQRSRIVSSLRRFLEDEGFMEVETPMLQPIYGGATAEPFKTH 218
Query: 468 HNDLNMDLYMRIAPELYLK 486
HN L +D+Y+RIAPELYLK
Sbjct: 219 HNTLKLDMYLRIAPELYLK 237
>sp|B7ISY7|SYK_BACC2 Lysine--tRNA ligase OS=Bacillus cereus (strain G9842) GN=lysS PE=3
SV=1
Length = 499
Score = 248 bits (634), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 132/285 (46%), Positives = 185/285 (64%), Gaps = 10/285 (3%)
Query: 46 LRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLEN-VTLSVAGRVHAIRE 104
+R + ++EQG P+ +F T+S D + Y + ++ E +T+S+AGR+ R
Sbjct: 15 VRREKLHNLREQGIDPFGKRFERTNSTTDLVSLYGEFSKEELEEKEITVSIAGRIMTKRG 74
Query: 105 SGTKLMFY--DLRGEGLKIQVMANARMYQSEEEFAS-DLVKIKRGDIIGVTGSPGKTKKG 161
G + DL G+ ++I V + + E F + DL GD++G+ G KT G
Sbjct: 75 KGKAGFAHIQDLHGQ-VQIYVRKDTVGDEEYELFTTADL-----GDLVGIEGKVFKTNVG 128
Query: 162 ELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221
ELS+ TLL+ L LP + G+KD E R+RQRYLDL+ + R F+ R++II +
Sbjct: 129 ELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSMESRETFVTRSKIIREM 188
Query: 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDR 281
RRYLD G+LEVETPMM+ IAGGA+A+PF THHN L+M+LYMRIA EL+LK L+VGGL++
Sbjct: 189 RRYLDDNGYLEVETPMMHAIAGGASARPFTTHHNALDMELYMRIAIELHLKRLIVGGLEK 248
Query: 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
VYE+GR FRNEG+ HNPEFT E Y AYADYND+M LTE++++
Sbjct: 249 VYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYNDIMKLTENMVA 293
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 92/127 (72%)
Query: 360 GDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINE 419
GD++G+ G KT GELS+ TLL+ L LP + G+KD E R+RQRYLDL+ +
Sbjct: 113 GDLVGIEGKVFKTNVGELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSM 172
Query: 420 RIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI 479
R F+ R++II +RRYLD G+LEVETPMM+ IAGGA+A+PF THHN L+M+LYMRI
Sbjct: 173 ESRETFVTRSKIIREMRRYLDDNGYLEVETPMMHAIAGGASARPFTTHHNALDMELYMRI 232
Query: 480 APELYLK 486
A EL+LK
Sbjct: 233 AIELHLK 239
>sp|A9VN90|SYK_BACWK Lysine--tRNA ligase OS=Bacillus weihenstephanensis (strain KBAB4)
GN=lysS PE=3 SV=1
Length = 499
Score = 248 bits (633), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 132/285 (46%), Positives = 186/285 (65%), Gaps = 10/285 (3%)
Query: 46 LRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLEN-VTLSVAGRVHAIRE 104
+R + ++EQG P+ +F T+S D + Y + ++ E +T+S+AGR+ R
Sbjct: 15 VRREKLHNLREQGIDPFGKRFERTNSTTDLVSLYGEFSKEELEEKEITVSIAGRIMTKRG 74
Query: 105 SGTKLMFY--DLRGEGLKIQVMANARMYQSEEEFAS-DLVKIKRGDIIGVTGSPGKTKKG 161
G + DL+G+ ++I V + + E F + DL GD++G+ G KT G
Sbjct: 75 KGKAGFAHIQDLQGQ-VQIYVRKDTVGDEEYELFTTADL-----GDLVGIEGKVFKTNVG 128
Query: 162 ELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221
ELS+ TLL+ L LP + G+KD E R+RQRYLDL+ + R F+ R++II +
Sbjct: 129 ELSVKAIGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSMESRETFVTRSKIIREM 188
Query: 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDR 281
RRYLD G+LEVETPMM+ IAGGA+A+PF THHN L+M+LYMRIA EL+LK L+VGGL++
Sbjct: 189 RRYLDDNGYLEVETPMMHAIAGGASARPFTTHHNALDMELYMRIAIELHLKRLIVGGLEK 248
Query: 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
VYE+GR FRNEG+ HNPEFT E Y AYADYND+M LTE++++
Sbjct: 249 VYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYNDIMKLTENMVA 293
Score = 146 bits (368), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 92/127 (72%)
Query: 360 GDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINE 419
GD++G+ G KT GELS+ TLL+ L LP + G+KD E R+RQRYLDL+ +
Sbjct: 113 GDLVGIEGKVFKTNVGELSVKAIGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSM 172
Query: 420 RIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI 479
R F+ R++II +RRYLD G+LEVETPMM+ IAGGA+A+PF THHN L+M+LYMRI
Sbjct: 173 ESRETFVTRSKIIREMRRYLDDNGYLEVETPMMHAIAGGASARPFTTHHNALDMELYMRI 232
Query: 480 APELYLK 486
A EL+LK
Sbjct: 233 AIELHLK 239
>sp|A5D5Q4|SYK_PELTS Lysine--tRNA ligase OS=Pelotomaculum thermopropionicum (strain DSM
13744 / JCM 10971 / SI) GN=lysS PE=3 SV=1
Length = 506
Score = 248 bits (632), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 131/292 (44%), Positives = 184/292 (63%), Gaps = 19/292 (6%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSS----LEDFIEKYSDLPDAQVLENVTLSVA 96
+E R+R + +++++G PY +F T + L++F+E +EN + +A
Sbjct: 23 NELMRVRREKLAELRDKGIEPYGGRFERTHTARYILDNFVE----------MENRPVVIA 72
Query: 97 GRVHAIRESGTKLMFYDLRGEG-LKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSP 155
GR+ + R G + G G ++I V N +S E F ++ GDIIGV GS
Sbjct: 73 GRIMSRRGMGKATFAHIQDGTGQIQIYVRLNDVGPESYELFG----RLDIGDIIGVQGSV 128
Query: 156 GKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRA 215
KT+ GE+++ + +LS L LP G++D E R+RQRY+DL++N ++ F R+
Sbjct: 129 FKTRMGEITVAAESFKILSKSLRPLPEKWHGLRDVELRYRQRYVDLIVNPEVKEVFETRS 188
Query: 216 QIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLV 275
+II R +LD GFLEVETPMM +I GGA A+PF+THHN L+MDLY+RIAPELYLK L+
Sbjct: 189 KIIRACRNFLDGKGFLEVETPMMQVIPGGAAARPFITHHNALDMDLYLRIAPELYLKRLL 248
Query: 276 VGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
VGG ++VYE+ R FRNEGI HNPEFT E Y AYADY D+M+LTE+LIS
Sbjct: 249 VGGFEKVYEINRNFRNEGISTKHNPEFTMLELYQAYADYTDMMNLTEELISA 300
Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 104/165 (63%), Gaps = 1/165 (0%)
Query: 360 GDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINE 419
GDIIGV GS KT+ GE+++ + +LS L LP G++D E R+RQRY+DL++N
Sbjct: 119 GDIIGVQGSVFKTRMGEITVAAESFKILSKSLRPLPEKWHGLRDVELRYRQRYVDLIVNP 178
Query: 420 RIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI 479
++ F R++II R +LD GFLEVETPMM +I GGA A+PF+THHN L+MDLY+RI
Sbjct: 179 EVKEVFETRSKIIRACRNFLDGKGFLEVETPMMQVIPGGAAARPFITHHNALDMDLYLRI 238
Query: 480 APELYLKSTH-GSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPA 523
APELYLK G ++ Y + + P F L ++ A
Sbjct: 239 APELYLKRLLVGGFEKVYEINRNFRNEGISTKHNPEFTMLELYQA 283
>sp|Q9RHV9|SYK_GEOSE Lysine--tRNA ligase OS=Geobacillus stearothermophilus GN=lysS PE=1
SV=1
Length = 494
Score = 247 bits (631), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 138/287 (48%), Positives = 185/287 (64%), Gaps = 10/287 (3%)
Query: 44 FRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLEN-VTLSVAGRVHAI 102
R+R +++++E G P+ +F T E+ E Y DL ++ E + ++VAGR+
Sbjct: 10 LRVRREKLKKIEELGVDPFGKRFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTK 69
Query: 103 RESGTKLMFY--DLRGEGLKIQVMANARMYQSEEEFA-SDLVKIKRGDIIGVTGSPGKTK 159
R G + D+ G+ ++I V + Q E F SDL GDI+GV G+ KTK
Sbjct: 70 RGMGKAGFAHIQDVTGQ-IQIYVRQDDVGEQQYELFKISDL-----GDIVGVRGTMFKTK 123
Query: 160 KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIA 219
GELSI L+ L LP + G+KD E R+RQRYLDL++N + FI R+ II
Sbjct: 124 VGELSIKVSSYEFLTKALRPLPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSLIIQ 183
Query: 220 YVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL 279
+RRYLDS G+LEVETPMM+ +AGGA A+PF+THHN L+M LYMRIA EL+LK L+VGGL
Sbjct: 184 SMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELHLKRLIVGGL 243
Query: 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
++VYE+GR FRNEGI HNPEFT E Y AYAD+ D+M LTE+LI+
Sbjct: 244 EKVYEIGRVFRNEGISTRHNPEFTMLELYEAYADFRDIMKLTENLIA 290
Score = 148 bits (374), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 92/127 (72%)
Query: 360 GDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINE 419
GDI+GV G+ KTK GELSI L+ L LP + G+KD E R+RQRYLDL++N
Sbjct: 110 GDIVGVRGTMFKTKVGELSIKVSSYEFLTKALRPLPEKYHGLKDIEQRYRQRYLDLIMNP 169
Query: 420 RIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI 479
+ FI R+ II +RRYLDS G+LEVETPMM+ +AGGA A+PF+THHN L+M LYMRI
Sbjct: 170 ESKKTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRI 229
Query: 480 APELYLK 486
A EL+LK
Sbjct: 230 AIELHLK 236
>sp|Q8YPW9|SYK_NOSS1 Lysine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=lysS PE=3 SV=1
Length = 561
Score = 247 bits (631), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 133/291 (45%), Positives = 189/291 (64%), Gaps = 8/291 (2%)
Query: 47 RSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESG 106
R VEQ+K+ G +PY +++ T EK++DL + +E +++AGR+ A R G
Sbjct: 10 RLEKVEQLKQLGTNPYAYRWESTHHAAQLQEKFADLTSGEEVET-EVAIAGRIMARRVFG 68
Query: 107 TKLMFYDLRGEGLKIQV-MANARMYQSEEEF-ASDLVKIKR----GDIIGVTGSPGKTKK 160
KL F+ L E IQ+ + R+ +S E A+ +K+ GDI+G G+ +T+K
Sbjct: 69 -KLAFFTLEDETGTIQLYLEKNRIQESMAEIDANAFNHLKQLTDVGDILGAKGTIKRTEK 127
Query: 161 GELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAY 220
GELS+ K+ T+L+ L LP G+ D R+RQRY+DL++N +R F RAQI A
Sbjct: 128 GELSVYVKEYTILTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNPEVRQTFRRRAQITAG 187
Query: 221 VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD 280
+RRYL+ FLE+ETP++ AGGA A+PFVT+HN L M+LY+RIA EL+LK L+VGG +
Sbjct: 188 IRRYLEQRDFLEIETPVLQSEAGGADARPFVTYHNTLEMELYLRIATELHLKRLIVGGFE 247
Query: 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKED 331
+V+E+GR FRNEGI HNPEFT+ E Y AYADYND+M LTE +I+ +D
Sbjct: 248 KVFELGRIFRNEGISTRHNPEFTSIEVYQAYADYNDMMALTEGIITTVAQD 298
Score = 139 bits (349), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 90/127 (70%)
Query: 360 GDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINE 419
GDI+G G+ +T+KGELS+ K+ T+L+ L LP G+ D R+RQRY+DL++N
Sbjct: 113 GDILGAKGTIKRTEKGELSVYVKEYTILTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNP 172
Query: 420 RIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI 479
+R F RAQI A +RRYL+ FLE+ETP++ AGGA A+PFVT+HN L M+LY+RI
Sbjct: 173 EVRQTFRRRAQITAGIRRYLEQRDFLEIETPVLQSEAGGADARPFVTYHNTLEMELYLRI 232
Query: 480 APELYLK 486
A EL+LK
Sbjct: 233 ATELHLK 239
>sp|Q81J70|SYK_BACCR Lysine--tRNA ligase OS=Bacillus cereus (strain ATCC 14579 / DSM 31)
GN=lysS PE=3 SV=1
Length = 499
Score = 247 bits (630), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 132/285 (46%), Positives = 183/285 (64%), Gaps = 10/285 (3%)
Query: 46 LRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLEN-VTLSVAGRVHAIRE 104
+R + ++EQG P+ +F T+S D + Y + ++ E + +S+AGR+ R
Sbjct: 15 VRREKLHNLREQGIDPFGKRFERTNSTTDLVSLYGEFSKEELEEKEIAVSIAGRIMTKRG 74
Query: 105 SGTKLMFY--DLRGEGLKIQVMANARMYQSEEEF-ASDLVKIKRGDIIGVTGSPGKTKKG 161
G + DL G+ ++I V +A E F +DL GD++G+ G KT G
Sbjct: 75 KGKAGFAHVQDLHGQ-VQIYVRKDAVGDDEYELFKTADL-----GDLVGIEGKVFKTNVG 128
Query: 162 ELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221
ELS+ TLL+ L LP + G+KD E R+RQRYLDL+ + R F+ R++II +
Sbjct: 129 ELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSMESRETFVTRSKIIREM 188
Query: 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDR 281
RRYLD G+LEVETPMM+ IAGGA+A+PF THHN L+M+LYMRIA EL+LK L+VGGL++
Sbjct: 189 RRYLDDNGYLEVETPMMHAIAGGASARPFTTHHNALDMELYMRIAIELHLKRLIVGGLEK 248
Query: 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
VYE+GR FRNEG+ HNPEFT E Y AYADY D+M LTED+++
Sbjct: 249 VYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYKDIMKLTEDMVA 293
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 92/127 (72%)
Query: 360 GDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINE 419
GD++G+ G KT GELS+ TLL+ L LP + G+KD E R+RQRYLDL+ +
Sbjct: 113 GDLVGIEGKVFKTNVGELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSM 172
Query: 420 RIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI 479
R F+ R++II +RRYLD G+LEVETPMM+ IAGGA+A+PF THHN L+M+LYMRI
Sbjct: 173 ESRETFVTRSKIIREMRRYLDDNGYLEVETPMMHAIAGGASARPFTTHHNALDMELYMRI 232
Query: 480 APELYLK 486
A EL+LK
Sbjct: 233 AIELHLK 239
>sp|B7HJ16|SYK_BACC4 Lysine--tRNA ligase OS=Bacillus cereus (strain B4264) GN=lysS PE=3
SV=1
Length = 499
Score = 247 bits (630), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 132/285 (46%), Positives = 183/285 (64%), Gaps = 10/285 (3%)
Query: 46 LRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLEN-VTLSVAGRVHAIRE 104
+R + ++EQG P+ +F T+S D + Y + ++ E + +S+AGR+ R
Sbjct: 15 VRREKLHNLREQGIDPFGKRFERTNSTTDLVSLYGEFSKEELEEKEIAVSIAGRIMTKRG 74
Query: 105 SGTKLMFY--DLRGEGLKIQVMANARMYQSEEEF-ASDLVKIKRGDIIGVTGSPGKTKKG 161
G + DL G+ ++I V +A E F +DL GD++G+ G KT G
Sbjct: 75 KGKAGFAHVQDLHGQ-VQIYVRKDAVGDDEYELFKTADL-----GDLVGIEGKVFKTNVG 128
Query: 162 ELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221
ELS+ TLL+ L LP + G+KD E R+RQRYLDL+ + R F+ R++II +
Sbjct: 129 ELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSMESRETFVTRSKIIREM 188
Query: 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDR 281
RRYLD G+LEVETPMM+ IAGGA+A+PF THHN L+M+LYMRIA EL+LK L+VGGL++
Sbjct: 189 RRYLDDNGYLEVETPMMHAIAGGASARPFTTHHNALDMELYMRIAIELHLKRLIVGGLEK 248
Query: 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
VYE+GR FRNEG+ HNPEFT E Y AYADY D+M LTED+++
Sbjct: 249 VYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYKDIMKLTEDMVA 293
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 92/127 (72%)
Query: 360 GDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINE 419
GD++G+ G KT GELS+ TLL+ L LP + G+KD E R+RQRYLDL+ +
Sbjct: 113 GDLVGIEGKVFKTNVGELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSM 172
Query: 420 RIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI 479
R F+ R++II +RRYLD G+LEVETPMM+ IAGGA+A+PF THHN L+M+LYMRI
Sbjct: 173 ESRETFVTRSKIIREMRRYLDDNGYLEVETPMMHAIAGGASARPFTTHHNALDMELYMRI 232
Query: 480 APELYLK 486
A EL+LK
Sbjct: 233 AIELHLK 239
>sp|A6UDA0|SYK_SINMW Lysine--tRNA ligase OS=Sinorhizobium medicae (strain WSM419)
GN=lysS PE=3 SV=1
Length = 498
Score = 246 bits (629), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 134/286 (46%), Positives = 190/286 (66%), Gaps = 9/286 (3%)
Query: 39 LTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDL-PDAQVLENVTLSVAG 97
L+S+ +R+ ++ ++EQ YP F T + + EKY DL PD + + VT VAG
Sbjct: 10 LSSDATEVRAQKLKLLREQIGDVYPAHFHRTMTNAELAEKYQDLAPDTETQDLVT--VAG 67
Query: 98 RVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK 157
RV++ R SG MF D+ KIQV ++ + EE L I GD+IGVTG +
Sbjct: 68 RVYSSRNSG---MFMDIHDASGKIQVFSHKDT--TPEEARGLLPMIDLGDVIGVTGLVRR 122
Query: 158 TKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQI 217
TK+GEL+I +++T+L+ L +P + G+ D ETR+R+RYLD+M+NE + +F R++I
Sbjct: 123 TKRGELTINAQQITMLTKSLLPMPEKYHGLADIETRYRKRYLDIMVNEESKLRFQQRSRI 182
Query: 218 IAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG 277
++ +RR+L+ GF+EVETPM+ I GGATA+PF THHN L +D+Y+RIAPELYLK ++V
Sbjct: 183 VSSLRRFLEDEGFMEVETPMLQPIYGGATAEPFKTHHNTLKLDMYLRIAPELYLKRVLVS 242
Query: 278 GL-DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTE 322
GL D+V+E+ R FRNEG+ HNPEFT E Y AYADY D+M L E
Sbjct: 243 GLTDKVFEINRNFRNEGVSTRHNPEFTMMECYWAYADYEDVMGLVE 288
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 103/139 (74%)
Query: 348 EEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETR 407
EE L I GD+IGVTG +TK+GEL+I +++T+L+ L +P + G+ D ETR
Sbjct: 99 EEARGLLPMIDLGDVIGVTGLVRRTKRGELTINAQQITMLTKSLLPMPEKYHGLADIETR 158
Query: 408 FRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTH 467
+R+RYLD+M+NE + +F R++I++ +RR+L+ GF+EVETPM+ I GGATA+PF TH
Sbjct: 159 YRKRYLDIMVNEESKLRFQQRSRIVSSLRRFLEDEGFMEVETPMLQPIYGGATAEPFKTH 218
Query: 468 HNDLNMDLYMRIAPELYLK 486
HN L +D+Y+RIAPELYLK
Sbjct: 219 HNTLKLDMYLRIAPELYLK 237
>sp|Q6HPU0|SYK_BACHK Lysine--tRNA ligase OS=Bacillus thuringiensis subsp. konkukian
(strain 97-27) GN=lysS PE=3 SV=1
Length = 499
Score = 246 bits (628), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 130/285 (45%), Positives = 186/285 (65%), Gaps = 10/285 (3%)
Query: 46 LRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLEN-VTLSVAGRVHAIRE 104
+R + ++EQG P+ +F T++ D + Y + ++ E +++S+AGR+ R
Sbjct: 15 VRREKLHNLREQGIDPFGKRFERTNATNDLLSLYGEFSKEELEEKEISVSIAGRIMTKRG 74
Query: 105 SGTKLMFY--DLRGEGLKIQVMANARMYQSEEEF-ASDLVKIKRGDIIGVTGSPGKTKKG 161
G + DL G+ ++I V +A + E F +DL GD++G+ G KT G
Sbjct: 75 KGKAGFAHIQDLHGQ-VQIYVRKDAVGDEEYELFKTADL-----GDLVGIEGKVFKTNVG 128
Query: 162 ELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221
ELS+ TLL+ L LP + G+KD E R+RQRYLDL+ + R F+ R++II +
Sbjct: 129 ELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSMESRETFVTRSKIIREM 188
Query: 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDR 281
RRYLD G+LEVETPMM+ IAGGA+A+PF+THHN L+M+LYMRIA EL+LK L+VGGL++
Sbjct: 189 RRYLDDNGYLEVETPMMHAIAGGASARPFITHHNALDMELYMRIAIELHLKRLIVGGLEK 248
Query: 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
VYE+GR FRNEG+ HNPEFT E Y AYADY D+M LTE++++
Sbjct: 249 VYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYKDIMKLTENMVA 293
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 93/127 (73%)
Query: 360 GDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINE 419
GD++G+ G KT GELS+ TLL+ L LP + G+KD E R+RQRYLDL+ +
Sbjct: 113 GDLVGIEGKVFKTNVGELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSM 172
Query: 420 RIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI 479
R F+ R++II +RRYLD G+LEVETPMM+ IAGGA+A+PF+THHN L+M+LYMRI
Sbjct: 173 ESRETFVTRSKIIREMRRYLDDNGYLEVETPMMHAIAGGASARPFITHHNALDMELYMRI 232
Query: 480 APELYLK 486
A EL+LK
Sbjct: 233 AIELHLK 239
>sp|Q63HC2|SYK_BACCZ Lysine--tRNA ligase OS=Bacillus cereus (strain ZK / E33L) GN=lysS
PE=3 SV=1
Length = 499
Score = 246 bits (628), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 130/285 (45%), Positives = 186/285 (65%), Gaps = 10/285 (3%)
Query: 46 LRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLEN-VTLSVAGRVHAIRE 104
+R + ++EQG P+ +F T++ D + Y + ++ E +++S+AGR+ R
Sbjct: 15 VRREKLHNLREQGIDPFGKRFERTNATNDLLSLYGEFSKEELEEKEISVSIAGRIMTKRG 74
Query: 105 SGTKLMFY--DLRGEGLKIQVMANARMYQSEEEF-ASDLVKIKRGDIIGVTGSPGKTKKG 161
G + DL G+ ++I V +A + E F +DL GD++G+ G KT G
Sbjct: 75 KGKAGFAHIQDLHGQ-VQIYVRKDAVGDEEYELFKTADL-----GDLVGIEGKVFKTNVG 128
Query: 162 ELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221
ELS+ TLL+ L LP + G+KD E R+RQRYLDL+ + R F+ R++II +
Sbjct: 129 ELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSMESRETFVTRSKIIREM 188
Query: 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDR 281
RRYLD G+LEVETPMM+ IAGGA+A+PF+THHN L+M+LYMRIA EL+LK L+VGGL++
Sbjct: 189 RRYLDDNGYLEVETPMMHAIAGGASARPFITHHNALDMELYMRIAIELHLKRLIVGGLEK 248
Query: 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
VYE+GR FRNEG+ HNPEFT E Y AYADY D+M LTE++++
Sbjct: 249 VYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYKDIMKLTENMVA 293
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 93/127 (73%)
Query: 360 GDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINE 419
GD++G+ G KT GELS+ TLL+ L LP + G+KD E R+RQRYLDL+ +
Sbjct: 113 GDLVGIEGKVFKTNVGELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSM 172
Query: 420 RIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI 479
R F+ R++II +RRYLD G+LEVETPMM+ IAGGA+A+PF+THHN L+M+LYMRI
Sbjct: 173 ESRETFVTRSKIIREMRRYLDDNGYLEVETPMMHAIAGGASARPFITHHNALDMELYMRI 232
Query: 480 APELYLK 486
A EL+LK
Sbjct: 233 AIELHLK 239
>sp|Q81VW3|SYK_BACAN Lysine--tRNA ligase OS=Bacillus anthracis GN=lysS PE=3 SV=1
Length = 499
Score = 246 bits (628), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 130/285 (45%), Positives = 186/285 (65%), Gaps = 10/285 (3%)
Query: 46 LRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLEN-VTLSVAGRVHAIRE 104
+R + ++EQG P+ +F T++ D + Y + ++ E +++S+AGR+ R
Sbjct: 15 VRREKLHNLREQGIDPFGKRFERTNATNDLLSLYGEFSKEELEEKEISVSIAGRIMTKRG 74
Query: 105 SGTKLMFY--DLRGEGLKIQVMANARMYQSEEEF-ASDLVKIKRGDIIGVTGSPGKTKKG 161
G + DL G+ ++I V +A + E F +DL GD++G+ G KT G
Sbjct: 75 KGKAGFAHIQDLHGQ-VQIYVRKDAVGDEEYELFKTADL-----GDLVGIEGKVFKTNVG 128
Query: 162 ELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221
ELS+ TLL+ L LP + G+KD E R+RQRYLDL+ + R F+ R++II +
Sbjct: 129 ELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSMESRETFVTRSKIIREM 188
Query: 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDR 281
RRYLD G+LEVETPMM+ IAGGA+A+PF+THHN L+M+LYMRIA EL+LK L+VGGL++
Sbjct: 189 RRYLDDNGYLEVETPMMHAIAGGASARPFITHHNALDMELYMRIAIELHLKRLIVGGLEK 248
Query: 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
VYE+GR FRNEG+ HNPEFT E Y AYADY D+M LTE++++
Sbjct: 249 VYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYKDIMKLTENMVA 293
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 93/127 (73%)
Query: 360 GDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINE 419
GD++G+ G KT GELS+ TLL+ L LP + G+KD E R+RQRYLDL+ +
Sbjct: 113 GDLVGIEGKVFKTNVGELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSM 172
Query: 420 RIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI 479
R F+ R++II +RRYLD G+LEVETPMM+ IAGGA+A+PF+THHN L+M+LYMRI
Sbjct: 173 ESRETFVTRSKIIREMRRYLDDNGYLEVETPMMHAIAGGASARPFITHHNALDMELYMRI 232
Query: 480 APELYLK 486
A EL+LK
Sbjct: 233 AIELHLK 239
>sp|A0R8E9|SYK_BACAH Lysine--tRNA ligase OS=Bacillus thuringiensis (strain Al Hakam)
GN=lysS PE=3 SV=1
Length = 499
Score = 246 bits (628), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 130/285 (45%), Positives = 186/285 (65%), Gaps = 10/285 (3%)
Query: 46 LRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLEN-VTLSVAGRVHAIRE 104
+R + ++EQG P+ +F T++ D + Y + ++ E +++S+AGR+ R
Sbjct: 15 VRREKLHNLREQGIDPFGKRFERTNATNDLLSLYGEFSKEELEEKEISVSIAGRIMTKRG 74
Query: 105 SGTKLMFY--DLRGEGLKIQVMANARMYQSEEEF-ASDLVKIKRGDIIGVTGSPGKTKKG 161
G + DL G+ ++I V +A + E F +DL GD++G+ G KT G
Sbjct: 75 KGKAGFAHIQDLHGQ-VQIYVRKDAVGDEEYELFKTADL-----GDLVGIEGKVFKTNVG 128
Query: 162 ELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221
ELS+ TLL+ L LP + G+KD E R+RQRYLDL+ + R F+ R++II +
Sbjct: 129 ELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSMESRETFVTRSKIIREM 188
Query: 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDR 281
RRYLD G+LEVETPMM+ IAGGA+A+PF+THHN L+M+LYMRIA EL+LK L+VGGL++
Sbjct: 189 RRYLDDNGYLEVETPMMHAIAGGASARPFITHHNALDMELYMRIAIELHLKRLIVGGLEK 248
Query: 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
VYE+GR FRNEG+ HNPEFT E Y AYADY D+M LTE++++
Sbjct: 249 VYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYKDIMKLTENMVA 293
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 93/127 (73%)
Query: 360 GDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINE 419
GD++G+ G KT GELS+ TLL+ L LP + G+KD E R+RQRYLDL+ +
Sbjct: 113 GDLVGIEGKVFKTNVGELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSM 172
Query: 420 RIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI 479
R F+ R++II +RRYLD G+LEVETPMM+ IAGGA+A+PF+THHN L+M+LYMRI
Sbjct: 173 ESRETFVTRSKIIREMRRYLDDNGYLEVETPMMHAIAGGASARPFITHHNALDMELYMRI 232
Query: 480 APELYLK 486
A EL+LK
Sbjct: 233 AIELHLK 239
>sp|B7JK84|SYK_BACC0 Lysine--tRNA ligase OS=Bacillus cereus (strain AH820) GN=lysS PE=3
SV=1
Length = 499
Score = 246 bits (628), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 130/285 (45%), Positives = 186/285 (65%), Gaps = 10/285 (3%)
Query: 46 LRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLEN-VTLSVAGRVHAIRE 104
+R + ++EQG P+ +F T++ D + Y + ++ E +++S+AGR+ R
Sbjct: 15 VRREKLHNLREQGIDPFGKRFERTNATNDLLSLYGEFSKEELEEKEISVSIAGRIMTKRG 74
Query: 105 SGTKLMFY--DLRGEGLKIQVMANARMYQSEEEF-ASDLVKIKRGDIIGVTGSPGKTKKG 161
G + DL G+ ++I V +A + E F +DL GD++G+ G KT G
Sbjct: 75 KGKAGFAHIQDLHGQ-VQIYVRKDAVGDEEYELFKTADL-----GDLVGIEGKVFKTNVG 128
Query: 162 ELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221
ELS+ TLL+ L LP + G+KD E R+RQRYLDL+ + R F+ R++II +
Sbjct: 129 ELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSMESRETFVTRSKIIREM 188
Query: 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDR 281
RRYLD G+LEVETPMM+ IAGGA+A+PF+THHN L+M+LYMRIA EL+LK L+VGGL++
Sbjct: 189 RRYLDDNGYLEVETPMMHAIAGGASARPFITHHNALDMELYMRIAIELHLKRLIVGGLEK 248
Query: 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
VYE+GR FRNEG+ HNPEFT E Y AYADY D+M LTE++++
Sbjct: 249 VYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYKDIMKLTENMVA 293
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 93/127 (73%)
Query: 360 GDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINE 419
GD++G+ G KT GELS+ TLL+ L LP + G+KD E R+RQRYLDL+ +
Sbjct: 113 GDLVGIEGKVFKTNVGELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSM 172
Query: 420 RIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI 479
R F+ R++II +RRYLD G+LEVETPMM+ IAGGA+A+PF+THHN L+M+LYMRI
Sbjct: 173 ESRETFVTRSKIIREMRRYLDDNGYLEVETPMMHAIAGGASARPFITHHNALDMELYMRI 232
Query: 480 APELYLK 486
A EL+LK
Sbjct: 233 AIELHLK 239
>sp|A8AP96|SYK_CITK8 Lysine--tRNA ligase OS=Citrobacter koseri (strain ATCC BAA-895 /
CDC 4225-83 / SGSC4696) GN=lysS PE=3 SV=1
Length = 505
Score = 246 bits (627), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 144/317 (45%), Positives = 192/317 (60%), Gaps = 17/317 (5%)
Query: 18 SQQHTT-AQTVTHLNTNYTQQCLTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFI 76
S+QH A VT LN + R + ++EQG P+P+ F + D +
Sbjct: 2 SEQHAQGADAVTDLNNE----------LKTRREKLASLREQGI-PFPNDFRRDHT-SDQL 49
Query: 77 EKYSDLPDAQVLE--NVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEE 134
D + + LE N+ +SVAGR+ R G K F L+ G +IQ+ AR E
Sbjct: 50 HADFDAKENEELEALNIEVSVAGRMMTRRIMG-KASFVTLQDVGGRIQLYV-ARDDLPEG 107
Query: 135 EFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRF 194
+ K GDI+G G KTK GELSI +L LL+ L LP G++D+E R+
Sbjct: 108 VYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGLQDQEARY 167
Query: 195 RQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHH 254
RQRYLDL+ N+ R+ F VR+QI+A +R+++ GF+EVETPMM +I GGA A+PF+THH
Sbjct: 168 RQRYLDLISNDESRNTFKVRSQIMAGIRQFMVGRGFMEVETPMMQVIPGGAAARPFITHH 227
Query: 255 NDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADY 314
N L++D+Y+RIAPELYLK LVVGG +RV+E+ R FRNEGI + HNPEFT E YMAYADY
Sbjct: 228 NALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADY 287
Query: 315 NDLMHLTEDLISGRKED 331
DL+ LTE L +D
Sbjct: 288 KDLIELTESLFRTLAQD 304
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 109/169 (64%), Gaps = 1/169 (0%)
Query: 356 KIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDL 415
K GDI+G G KTK GELSI +L LL+ L LP G++D+E R+RQRYLDL
Sbjct: 115 KWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGLQDQEARYRQRYLDL 174
Query: 416 MINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDL 475
+ N+ R+ F VR+QI+A +R+++ GF+EVETPMM +I GGA A+PF+THHN L++D+
Sbjct: 175 ISNDESRNTFKVRSQIMAGIRQFMVGRGFMEVETPMMQVIPGGAAARPFITHHNALDLDM 234
Query: 476 YMRIAPELYLKS-THGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPA 523
Y+RIAPELYLK G ++ + + + + P F + ++ A
Sbjct: 235 YLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMA 283
>sp|A7GJY9|SYK_BACCN Lysine--tRNA ligase OS=Bacillus cereus subsp. cytotoxis (strain NVH
391-98) GN=lysS PE=3 SV=1
Length = 499
Score = 245 bits (626), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 131/285 (45%), Positives = 186/285 (65%), Gaps = 10/285 (3%)
Query: 46 LRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLEN-VTLSVAGRVHAIRE 104
+R + ++EQG P+ +F T S ++ + Y + ++ E +++S+AGR+ R
Sbjct: 15 VRREKLHNLREQGIDPFGKRFERTHSSKELLNLYGEFSKEELEEKAISVSIAGRIMTKRG 74
Query: 105 SGTKLMFY--DLRGEGLKIQVMANARMYQSEEEF-ASDLVKIKRGDIIGVTGSPGKTKKG 161
G + DL G+ ++I V +A + E F +DL GD++G+ G KT G
Sbjct: 75 KGKAGFAHIQDLHGQ-VQIYVRKDAVGDEEYELFKTADL-----GDLVGIEGKVFKTNVG 128
Query: 162 ELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221
ELS+ TLL+ L LP + G+KD E R+RQRYLDL+ + R F+ R++II +
Sbjct: 129 ELSVKATSFTLLTKSLRPLPDKYHGLKDIEQRYRQRYLDLITSMESRETFVTRSKIIREM 188
Query: 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDR 281
RRYLD G+LEVETPMM+ IAGGA+A+PF+THHN L+M+LYMRIA EL+LK L+VGGL++
Sbjct: 189 RRYLDDNGYLEVETPMMHTIAGGASARPFITHHNALDMELYMRIAIELHLKRLIVGGLEK 248
Query: 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
VYE+GR FRNEG+ HNPEFT E Y AYADY D+M LTE++I+
Sbjct: 249 VYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYKDIMKLTENMIA 293
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 93/127 (73%)
Query: 360 GDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINE 419
GD++G+ G KT GELS+ TLL+ L LP + G+KD E R+RQRYLDL+ +
Sbjct: 113 GDLVGIEGKVFKTNVGELSVKATSFTLLTKSLRPLPDKYHGLKDIEQRYRQRYLDLITSM 172
Query: 420 RIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI 479
R F+ R++II +RRYLD G+LEVETPMM+ IAGGA+A+PF+THHN L+M+LYMRI
Sbjct: 173 ESRETFVTRSKIIREMRRYLDDNGYLEVETPMMHTIAGGASARPFITHHNALDMELYMRI 232
Query: 480 APELYLK 486
A EL+LK
Sbjct: 233 AIELHLK 239
>sp|Q3M8C8|SYK_ANAVT Lysine--tRNA ligase OS=Anabaena variabilis (strain ATCC 29413 / PCC
7937) GN=lysS PE=3 SV=1
Length = 561
Score = 245 bits (626), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 131/291 (45%), Positives = 188/291 (64%), Gaps = 8/291 (2%)
Query: 47 RSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESG 106
R VEQ+K+ G +PY +++ T EK++DL + + + +++AGR+ A R G
Sbjct: 10 RLEKVEQLKQLGTNPYAYRWESTHHAAQLQEKFADLTSGEEV-DTEVAIAGRIMARRVFG 68
Query: 107 TKLMFYDLRGEGLKIQV-MANARMYQSEEEFASDLVK-IKR----GDIIGVTGSPGKTKK 160
KL F+ L E IQ+ + R+ +S E +D +K+ GDI+G G+ +T+K
Sbjct: 69 -KLAFFTLEDETGTIQLYLEKNRIQESMAETDADAFNHLKQLTDVGDILGAKGTIKRTEK 127
Query: 161 GELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAY 220
GELSI K+ T+L+ L LP G+ D R+RQRY+DL++N +R F RAQI A
Sbjct: 128 GELSIYVKEYTILTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNPEVRQTFRRRAQITAG 187
Query: 221 VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD 280
+RRYL+ FLE+ETP++ GGA A+PF+T+HN L M+LY+RIA EL+LK L+VGG +
Sbjct: 188 IRRYLEQRDFLEIETPVLQSETGGADARPFITYHNTLEMELYLRIATELHLKRLIVGGFE 247
Query: 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKED 331
+V+E+GR FRNEGI HNPEFT+ E Y AYADYND+M LTE +I+ +D
Sbjct: 248 KVFELGRVFRNEGISTRHNPEFTSIEIYQAYADYNDMMALTEGIITTVAQD 298
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 89/127 (70%)
Query: 360 GDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINE 419
GDI+G G+ +T+KGELSI K+ T+L+ L LP G+ D R+RQRY+DL++N
Sbjct: 113 GDILGAKGTIKRTEKGELSIYVKEYTILTKSLLPLPDKWHGLTDVAKRYRQRYVDLIVNP 172
Query: 420 RIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI 479
+R F RAQI A +RRYL+ FLE+ETP++ GGA A+PF+T+HN L M+LY+RI
Sbjct: 173 EVRQTFRRRAQITAGIRRYLEQRDFLEIETPVLQSETGGADARPFITYHNTLEMELYLRI 232
Query: 480 APELYLK 486
A EL+LK
Sbjct: 233 ATELHLK 239
>sp|A0AF28|SYK_LISW6 Lysine--tRNA ligase OS=Listeria welshimeri serovar 6b (strain ATCC
35897 / DSM 20650 / SLCC5334) GN=lysS PE=3 SV=1
Length = 498
Score = 245 bits (626), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 130/286 (45%), Positives = 185/286 (64%), Gaps = 12/286 (4%)
Query: 46 LRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLEN-VTLSVAGRVHAIRE 104
+R V+ ++E+G P+ KF + S E+ K++D ++ E + +SVAGR+ R
Sbjct: 15 VRREKVDTLREEGIDPFGEKFIRSISPEEIETKFADKSKEELEEAAIEVSVAGRIMTKRV 74
Query: 105 SGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKR----GDIIGVTGSPGKTKK 160
G K+ F ++ ++Q+ Y ++ D I + GDIIG+ G+ +T
Sbjct: 75 KG-KVGFTHIQDRFHQLQI------YIRKDAIGEDAYAIFKLADLGDIIGIKGTIFRTNT 127
Query: 161 GELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAY 220
GELS+ TLLS L LP + G+KD E R+RQRYLDL+ NE +++F++R++I+ Y
Sbjct: 128 GELSVKATDFTLLSKSLRPLPDKYHGLKDVEQRYRQRYLDLITNEESQNRFVMRSKILKY 187
Query: 221 VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD 280
R Y+DS GFLEVETP+++ IAGGA AKPF+THHN L+M+LY+RIA EL+LK L+VGG+D
Sbjct: 188 TRDYMDSQGFLEVETPVLHTIAGGAAAKPFITHHNALDMELYLRIALELHLKRLIVGGMD 247
Query: 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
+VYE+GR FRNEG HNPEFT E Y AY DY D+M L E L+S
Sbjct: 248 KVYEIGRVFRNEGTSTRHNPEFTMLESYAAYEDYEDVMDLVEGLVS 293
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/127 (56%), Positives = 97/127 (76%)
Query: 360 GDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINE 419
GDIIG+ G+ +T GELS+ TLLS L LP + G+KD E R+RQRYLDL+ NE
Sbjct: 113 GDIIGIKGTIFRTNTGELSVKATDFTLLSKSLRPLPDKYHGLKDVEQRYRQRYLDLITNE 172
Query: 420 RIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI 479
+++F++R++I+ Y R Y+DS GFLEVETP+++ IAGGA AKPF+THHN L+M+LY+RI
Sbjct: 173 ESQNRFVMRSKILKYTRDYMDSQGFLEVETPVLHTIAGGAAAKPFITHHNALDMELYLRI 232
Query: 480 APELYLK 486
A EL+LK
Sbjct: 233 ALELHLK 239
>sp|A9MRI4|SYK_SALAR Lysine--tRNA ligase OS=Salmonella arizonae (strain ATCC BAA-731 /
CDC346-86 / RSK2980) GN=lysS PE=3 SV=1
Length = 505
Score = 244 bits (624), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/308 (44%), Positives = 194/308 (62%), Gaps = 11/308 (3%)
Query: 45 RLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLE--NVTLSVAGRVHAI 102
+ R + ++EQG P+P+ F + + ++ D +A+ LE N+ +SVAGR+
Sbjct: 20 KARREKLAALREQGI-PFPNDFRRDRTSDQLHAEF-DAKEAEELEALNIEVSVAGRMMTR 77
Query: 103 RESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGE 162
R G K F L+ G +IQ+ AR E + K GDI+G G KTK GE
Sbjct: 78 RIMG-KASFVTLQDVGGRIQLYV-ARDDLPEGVYNEQFKKWDLGDILGAKGKLFKTKTGE 135
Query: 163 LSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVR 222
LSI +L LL+ L LP G++D+E R+RQRYLDL+ N+ R+ F R++I+A +R
Sbjct: 136 LSIHCSELRLLTKALRPLPDKFHGLQDQEARYRQRYLDLISNDESRNTFKTRSKILAGIR 195
Query: 223 RYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRV 282
+++ + GF+EVETPMM +I GGA+A+PF+THHN L++D+Y+RIAPELYLK LVVGG +RV
Sbjct: 196 QFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERV 255
Query: 283 YEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDRNRPCVMANAR 342
+E+ R FRNEGI + HNPEFT E YMAYADY DL+ LTE L +D V+ N +
Sbjct: 256 FEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRTLAQD-----VLGNTQ 310
Query: 343 MYQSEEEF 350
+ +E F
Sbjct: 311 VPYGDEVF 318
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 110/169 (65%), Gaps = 1/169 (0%)
Query: 356 KIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDL 415
K GDI+G G KTK GELSI +L LL+ L LP G++D+E R+RQRYLDL
Sbjct: 115 KWDLGDILGAKGKLFKTKTGELSIHCSELRLLTKALRPLPDKFHGLQDQEARYRQRYLDL 174
Query: 416 MINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDL 475
+ N+ R+ F R++I+A +R+++ + GF+EVETPMM +I GGA+A+PF+THHN L++D+
Sbjct: 175 ISNDESRNTFKTRSKILAGIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDM 234
Query: 476 YMRIAPELYLKS-THGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPA 523
Y+RIAPELYLK G ++ + + + + P F + ++ A
Sbjct: 235 YLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMA 283
>sp|A5UCQ0|SYK_HAEIE Lysine--tRNA ligase OS=Haemophilus influenzae (strain PittEE)
GN=lysS PE=3 SV=1
Length = 502
Score = 244 bits (624), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 131/282 (46%), Positives = 185/282 (65%), Gaps = 6/282 (2%)
Query: 46 LRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLE--NVTLSVAGRVHAIR 103
+R + ++ +G + +P+KF + +D +Y D D ++L+ V + VAGR+ R
Sbjct: 17 VRREKLSALRAKG-NAFPNKFRRDALAQDLHNQY-DSEDGEILKEKGVEVQVAGRIMTRR 74
Query: 104 ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGEL 163
G K F ++ KIQ+ AR E +A D+ GDIIGV G+ KTK EL
Sbjct: 75 AMG-KATFITIQDMSGKIQLYV-ARDNLPEGVYAEDVGNWDLGDIIGVKGTLFKTKTNEL 132
Query: 164 SIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRR 223
+I ++ LL+ L LP G+ D+E R+RQRYLDL+ NE R FI+R++++A +R
Sbjct: 133 TIKTTEVQLLTKALRPLPDKFHGLTDQEVRYRQRYLDLISNEESRRTFIIRSKVVAGIRE 192
Query: 224 YLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVY 283
Y S GF+EVETPM+ +I GGA+A+PFVTHHN L++D+Y+RIAPELYLK LVVGG +RV+
Sbjct: 193 YFISKGFMEVETPMLQVIPGGASARPFVTHHNALDVDMYLRIAPELYLKRLVVGGFERVF 252
Query: 284 EVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLI 325
E+ R FRNEG+ + HNPEFT E+Y AYADY+DLM TE+L+
Sbjct: 253 ELNRNFRNEGVSVRHNPEFTMLEYYQAYADYHDLMDNTEELL 294
Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 111/175 (63%), Gaps = 1/175 (0%)
Query: 350 FASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFR 409
+A D+ GDIIGV G+ KTK EL+I ++ LL+ L LP G+ D+E R+R
Sbjct: 105 YAEDVGNWDLGDIIGVKGTLFKTKTNELTIKTTEVQLLTKALRPLPDKFHGLTDQEVRYR 164
Query: 410 QRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHN 469
QRYLDL+ NE R FI+R++++A +R Y S GF+EVETPM+ +I GGA+A+PFVTHHN
Sbjct: 165 QRYLDLISNEESRRTFIIRSKVVAGIREYFISKGFMEVETPMLQVIPGGASARPFVTHHN 224
Query: 470 DLNMDLYMRIAPELYLKS-THGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPA 523
L++D+Y+RIAPELYLK G ++ + + V + P F L + A
Sbjct: 225 ALDVDMYLRIAPELYLKRLVVGGFERVFELNRNFRNEGVSVRHNPEFTMLEYYQA 279
>sp|B7ID87|SYK_THEAB Lysine--tRNA ligase OS=Thermosipho africanus (strain TCF52B)
GN=lysS PE=3 SV=1
Length = 502
Score = 244 bits (624), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/287 (42%), Positives = 190/287 (66%), Gaps = 4/287 (1%)
Query: 39 LTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGR 98
+ EF R ++Q+ +G +PYP+KF T S +D ++ +L +V E+ ++S AGR
Sbjct: 1 MLKEFREQRINEIKQISAKGVNPYPYKFEKTHSSQDIKAQFENLNPGEVKEDASVSTAGR 60
Query: 99 VHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSE-EEFASDLVKIKRGDIIGVTGSPGK 157
+ ++R G K F+ ++ +IQ + + EF + + I GDI+GV GS K
Sbjct: 61 IMSLRHHG-KSAFFHIKDFFGRIQAYIRQDIVGKDVYEFFKEHIAI--GDIVGVKGSVFK 117
Query: 158 TKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQI 217
+K GE++I+ K++ LL+ L +P G+KDKE +RQRY+D++ N+ ++F +R +I
Sbjct: 118 SKTGEVTILVKEIELLNKPLRPMPEKWHGIKDKEVLYRQRYVDMIANDETLNRFRIRFEI 177
Query: 218 IAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG 277
I +R +L+S GF+EVETP++ + GGA+A+PF+TH N ++D+YMRIA ELYLK +VG
Sbjct: 178 IKLIREFLNSKGFIEVETPILEYVTGGASARPFITHLNVFDIDMYMRIATELYLKRFIVG 237
Query: 278 GLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDL 324
G ++VYE+G+ FRNEG+ H+PEFT+ E Y AYADY D+M+LTE+L
Sbjct: 238 GFEKVYELGKNFRNEGLSYKHHPEFTSIEIYQAYADYEDMMNLTEEL 284
Score = 139 bits (349), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 127/239 (53%), Gaps = 52/239 (21%)
Query: 349 EFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRF 408
EF + + I GDI+GV GS K+K GE++I+ K++ LL+ L +P G+KDKE +
Sbjct: 97 EFFKEHIAI--GDIVGVKGSVFKSKTGEVTILVKEIELLNKPLRPMPEKWHGIKDKEVLY 154
Query: 409 RQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHH 468
RQRY+D++ N+ ++F +R +II +R +L+S GF+EVETP++ + GGA+A+PF+TH
Sbjct: 155 RQRYVDMIANDETLNRFRIRFEIIKLIREFLNSKGFIEVETPILEYVTGGASARPFITHL 214
Query: 469 NDLNMDLYMRIAPELYLKS-THGSYKVTY------------HPDGPESGS---------- 505
N ++D+YMRIA ELYLK G ++ Y + PE S
Sbjct: 215 NVFDIDMYMRIATELYLKRFIVGGFEKVYELGKNFRNEGLSYKHHPEFTSIEIYQAYADY 274
Query: 506 ---------------------------PVEIDFTPPFRRLHMFPALEAALGVKLPNPTE 537
+EIDF+ P+RR+ M ++ LGV + TE
Sbjct: 275 EDMMNLTEELFVFIVEKLFGTTKVKYQDIEIDFSRPWRRVKMRDFIKEHLGVDILEDTE 333
>sp|Q0B0N3|SYK_SYNWW Lysine--tRNA ligase OS=Syntrophomonas wolfei subsp. wolfei (strain
Goettingen) GN=lysS PE=3 SV=1
Length = 493
Score = 244 bits (624), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 132/291 (45%), Positives = 182/291 (62%), Gaps = 17/291 (5%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVH 100
SE ++R + ++KE G P+ +F S ++ E +S+L E T+++AGR+
Sbjct: 9 SELKKVRLEKLAELKEMGIEPFGRRFERDSMAQNIKEAFSEL------EGKTIAIAGRIM 62
Query: 101 AIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASD----LVKIKRGDIIGVTGSPG 156
+ R G K F +L IQ +Y +++ + K+ GDI+G+ G
Sbjct: 63 SKRRHG-KAGFANLADLSGSIQ------LYFRQDDLGPEKYELYKKLDIGDILGIQGEVF 115
Query: 157 KTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQ 216
+T+KGE+SI + L LS L LP G+KD E R+RQRY+DL++N ++ F+ R++
Sbjct: 116 RTQKGEISIHVRDLYYLSKSLTPLPEKWHGLKDVELRYRQRYVDLIVNPEVKEVFVKRSR 175
Query: 217 IIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVV 276
II +R YLD GFLEVETPMM I GGATA+PF+THHN L+M+LY+RIAPELYLK L+V
Sbjct: 176 IIKEMRNYLDDRGFLEVETPMMQPIPGGATARPFITHHNALDMELYLRIAPELYLKRLIV 235
Query: 277 GGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
GGL++VYE+ R FRNEGI HNPEFT E Y AY DY +M L EDLIS
Sbjct: 236 GGLEKVYEINRNFRNEGISTRHNPEFTMLEIYQAYGDYEVMMQLCEDLISA 286
Score = 152 bits (384), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 73/131 (55%), Positives = 96/131 (73%)
Query: 356 KIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDL 415
K+ GDI+G+ G +T+KGE+SI + L LS L LP G+KD E R+RQRY+DL
Sbjct: 101 KLDIGDILGIQGEVFRTQKGEISIHVRDLYYLSKSLTPLPEKWHGLKDVELRYRQRYVDL 160
Query: 416 MINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDL 475
++N ++ F+ R++II +R YLD GFLEVETPMM I GGATA+PF+THHN L+M+L
Sbjct: 161 IVNPEVKEVFVKRSRIIKEMRNYLDDRGFLEVETPMMQPIPGGATARPFITHHNALDMEL 220
Query: 476 YMRIAPELYLK 486
Y+RIAPELYLK
Sbjct: 221 YLRIAPELYLK 231
>sp|P57822|SYK_PASMU Lysine--tRNA ligase OS=Pasteurella multocida (strain Pm70) GN=lysS
PE=3 SV=1
Length = 501
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 131/281 (46%), Positives = 184/281 (65%), Gaps = 4/281 (1%)
Query: 46 LRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLP-DAQVLENVTLSVAGRVHAIRE 104
+R + ++ +G +P+P+ F + +D Y L +A + V + VAGR+ R
Sbjct: 16 VRREKLAALRAKG-NPFPNTFRRDALAQDLHANYDALEGEALKAQEVEVKVAGRIMTRRA 74
Query: 105 SGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164
G K F L+ +IQ+ AR E +A D+ + GDIIGV G+ KTK EL+
Sbjct: 75 MG-KATFITLQDMSGRIQLYV-ARDNLPEGIYADDVGQWDLGDIIGVKGTLFKTKTNELT 132
Query: 165 IIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRY 224
+ ++ LL+ L LP G+ D+ETR+RQRYLDL+ NE R FI+R+++IA +R Y
Sbjct: 133 VRCTEVQLLTKALRPLPDKFHGLSDQETRYRQRYLDLIANEDSRRTFIIRSKVIAGIREY 192
Query: 225 LDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYE 284
S GF+EVETPM+ +I GGA+A+PFVTHHN L++D+Y+RIAPELYLK LVVGG +RV+E
Sbjct: 193 FLSKGFMEVETPMLQIIPGGASARPFVTHHNALDVDMYLRIAPELYLKRLVVGGFERVFE 252
Query: 285 VGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLI 325
+ R FRNEG+ + HNPEFT E+Y AYADY+DLM TE+L+
Sbjct: 253 LNRNFRNEGVSVRHNPEFTMLEYYQAYADYHDLMDNTEELL 293
Score = 158 bits (400), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Query: 350 FASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFR 409
+A D+ + GDIIGV G+ KTK EL++ ++ LL+ L LP G+ D+ETR+R
Sbjct: 104 YADDVGQWDLGDIIGVKGTLFKTKTNELTVRCTEVQLLTKALRPLPDKFHGLSDQETRYR 163
Query: 410 QRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHN 469
QRYLDL+ NE R FI+R+++IA +R Y S GF+EVETPM+ +I GGA+A+PFVTHHN
Sbjct: 164 QRYLDLIANEDSRRTFIIRSKVIAGIREYFLSKGFMEVETPMLQIIPGGASARPFVTHHN 223
Query: 470 DLNMDLYMRIAPELYLKS-THGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPA 523
L++D+Y+RIAPELYLK G ++ + + V + P F L + A
Sbjct: 224 ALDVDMYLRIAPELYLKRLVVGGFERVFELNRNFRNEGVSVRHNPEFTMLEYYQA 278
>sp|P37477|SYK_BACSU Lysine--tRNA ligase OS=Bacillus subtilis (strain 168) GN=lysS PE=3
SV=1
Length = 499
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 132/287 (45%), Positives = 185/287 (64%), Gaps = 10/287 (3%)
Query: 44 FRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLEN-VTLSVAGRVHAI 102
++R + Q+++ G P+ +F T ++ I Y DL ++ E + +++AGR+
Sbjct: 15 LQVRRDKMNQLRDNGIDPFGARFERTHQSQEVISAYQDLTKEELEEKAIEVTIAGRMMTK 74
Query: 103 RESGTKLMFY--DLRGEGLKIQVMANARMYQSEEEF-ASDLVKIKRGDIIGVTGSPGKTK 159
R G + DL G+ ++I V ++ E F +SDL GD+IGVTG KT
Sbjct: 75 RGKGKAGFAHLQDLEGQ-IQIYVRKDSVGDDQYEIFKSSDL-----GDLIGVTGKVFKTN 128
Query: 160 KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIA 219
GELS+ LL+ L LP + G+KD E R+RQRYLDL++N +H FI R++II
Sbjct: 129 VGELSVKATSFELLTKALRPLPDKYHGLKDVEQRYRQRYLDLIVNPDSKHTFITRSKIIQ 188
Query: 220 YVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL 279
+RRYLD G+LEVETP M+ I GGA+A+PF+THHN L++ LYMRIA EL+LK L+VGGL
Sbjct: 189 AMRRYLDDHGYLEVETPTMHSIPGGASARPFITHHNALDIPLYMRIAIELHLKRLIVGGL 248
Query: 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
++VYE+GR FRNEG+ HNPEFT E Y AYADY D+M LTE+L++
Sbjct: 249 EKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYKDIMSLTENLVA 295
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/136 (55%), Positives = 96/136 (70%), Gaps = 5/136 (3%)
Query: 351 ASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQ 410
+SDL GD+IGVTG KT GELS+ LL+ L LP + G+KD E R+RQ
Sbjct: 111 SSDL-----GDLIGVTGKVFKTNVGELSVKATSFELLTKALRPLPDKYHGLKDVEQRYRQ 165
Query: 411 RYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHND 470
RYLDL++N +H FI R++II +RRYLD G+LEVETP M+ I GGA+A+PF+THHN
Sbjct: 166 RYLDLIVNPDSKHTFITRSKIIQAMRRYLDDHGYLEVETPTMHSIPGGASARPFITHHNA 225
Query: 471 LNMDLYMRIAPELYLK 486
L++ LYMRIA EL+LK
Sbjct: 226 LDIPLYMRIAIELHLK 241
>sp|Q8PVP6|SYK2_METMA Lysine--tRNA ligase 2 OS=Methanosarcina mazei (strain ATCC BAA-159
/ DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=lysS2
PE=3 SV=1
Length = 511
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 128/271 (47%), Positives = 177/271 (65%), Gaps = 7/271 (2%)
Query: 57 QGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRG 116
QG +PYP+KF + + +EK+ D E +T+ AGR++ IR+ G K++F DL
Sbjct: 42 QGLNPYPYKFEKDEDICEILEKFEDFEKN---EGLTVRTAGRLYNIRKHG-KMIFADLGD 97
Query: 117 EGLKIQVMANARMYQSEE-EFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSP 175
+ ++QV+ EE E +LV GDIIGV G +TK+GE SI + +LLS
Sbjct: 98 QAGRVQVLVRKGNLPDEEFEIFKNLVD--SGDIIGVQGDLFRTKRGENSISVSEFSLLSK 155
Query: 176 CLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVET 235
L LP G+KD ETR+R+RYLDL++N R F++R+++I+ +RR+L FLE ET
Sbjct: 156 SLCALPEKFHGLKDVETRYRKRYLDLIVNAEKREIFVMRSKLISEIRRFLTDREFLEFET 215
Query: 236 PMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGID 295
P++ + GGA A+PF T HN L +L++RIAPELYLK LVVGG ++V+E+ + FRNE ID
Sbjct: 216 PILQTVYGGANARPFTTFHNCLGQNLFLRIAPELYLKRLVVGGYEKVFEICKNFRNEDID 275
Query: 296 LTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
THNPEFT E Y AY DYND+M LTE L+S
Sbjct: 276 TTHNPEFTMIEVYEAYRDYNDMMDLTESLVS 306
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 106/178 (59%), Gaps = 1/178 (0%)
Query: 347 EEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKET 406
+EEF + GDIIGV G +TK+GE SI + +LLS L LP G+KD ET
Sbjct: 113 DEEFEIFKNLVDSGDIIGVQGDLFRTKRGENSISVSEFSLLSKSLCALPEKFHGLKDVET 172
Query: 407 RFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVT 466
R+R+RYLDL++N R F++R+++I+ +RR+L FLE ETP++ + GGA A+PF T
Sbjct: 173 RYRKRYLDLIVNAEKREIFVMRSKLISEIRRFLTDREFLEFETPILQTVYGGANARPFTT 232
Query: 467 HHNDLNMDLYMRIAPELYLKS-THGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPA 523
HN L +L++RIAPELYLK G Y+ + ++ P F + ++ A
Sbjct: 233 FHNCLGQNLFLRIAPELYLKRLVVGGYEKVFEICKNFRNEDIDTTHNPEFTMIEVYEA 290
>sp|Q8YAB8|SYK_LISMO Lysine--tRNA ligase OS=Listeria monocytogenes serovar 1/2a (strain
ATCC BAA-679 / EGD-e) GN=lysS PE=3 SV=1
Length = 498
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 128/286 (44%), Positives = 186/286 (65%), Gaps = 12/286 (4%)
Query: 46 LRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLEN-VTLSVAGRVHAIRE 104
+R V+ ++E+G P+ KF + S E+ K++D ++ E + +SVAGR+ R
Sbjct: 15 VRREKVDTLREEGIDPFGEKFIRSISPEEIETKFADKSKEELEEAAIEVSVAGRIMTKRV 74
Query: 105 SGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKR----GDIIGVTGSPGKTKK 160
G K+ F ++ ++Q+ Y ++ D + + GDIIG+ G+ +T
Sbjct: 75 KG-KVGFTHIQDRFHQLQI------YIRKDAIGEDAYAVFKLADLGDIIGIKGTIFRTNT 127
Query: 161 GELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAY 220
GELS+ + TLLS L LP + G+KD E R+RQRYLDL+ NE +++F++R++I+ Y
Sbjct: 128 GELSVKATEFTLLSKSLRPLPDKYHGLKDVEQRYRQRYLDLITNEESQNRFVMRSKILKY 187
Query: 221 VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD 280
R Y+D+ GFLEVETP+++ IAGGA AKPF+THHN L+M+LY+RIA EL+LK L+VGG+D
Sbjct: 188 TRDYMDNQGFLEVETPVLHTIAGGAAAKPFITHHNALDMELYLRIALELHLKRLIVGGMD 247
Query: 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
+VYE+GR FRNEG HNPEFT E Y AY DY D+M L E L+S
Sbjct: 248 KVYEIGRVFRNEGTSTRHNPEFTMLESYAAYEDYEDVMDLVEGLVS 293
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 98/127 (77%)
Query: 360 GDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINE 419
GDIIG+ G+ +T GELS+ + TLLS L LP + G+KD E R+RQRYLDL+ NE
Sbjct: 113 GDIIGIKGTIFRTNTGELSVKATEFTLLSKSLRPLPDKYHGLKDVEQRYRQRYLDLITNE 172
Query: 420 RIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI 479
+++F++R++I+ Y R Y+D+ GFLEVETP+++ IAGGA AKPF+THHN L+M+LY+RI
Sbjct: 173 ESQNRFVMRSKILKYTRDYMDNQGFLEVETPVLHTIAGGAAAKPFITHHNALDMELYLRI 232
Query: 480 APELYLK 486
A EL+LK
Sbjct: 233 ALELHLK 239
>sp|B7HPY8|SYK_BACC7 Lysine--tRNA ligase OS=Bacillus cereus (strain AH187) GN=lysS PE=3
SV=1
Length = 499
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/285 (45%), Positives = 186/285 (65%), Gaps = 10/285 (3%)
Query: 46 LRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLEN-VTLSVAGRVHAIRE 104
+R + ++EQG P+ +F T++ + + Y + ++ E +++S+AGR+ R
Sbjct: 15 VRREKLHNLREQGIDPFGKRFERTNATNELLSLYGEFSKEELEEKEISVSIAGRIMTKRG 74
Query: 105 SGTKLMFY--DLRGEGLKIQVMANARMYQSEEEF-ASDLVKIKRGDIIGVTGSPGKTKKG 161
G + DL G+ ++I V +A + E F +DL GD++G+ G KT G
Sbjct: 75 KGKAGFAHIQDLHGQ-VQIYVRKDAVGDEEYELFKTADL-----GDLVGIEGKVFKTNVG 128
Query: 162 ELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221
ELS+ TLL+ L LP + G+KD E R+RQRYLDL+ + R F+ R++II +
Sbjct: 129 ELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSMESRETFVTRSKIIREM 188
Query: 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDR 281
RRYLD G+LEVETPMM+ IAGGA+A+PF+THHN L+M+LYMRIA EL+LK L+VGGL++
Sbjct: 189 RRYLDDNGYLEVETPMMHAIAGGASARPFITHHNALDMELYMRIAIELHLKRLIVGGLEK 248
Query: 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
VYE+GR FRNEG+ HNPEFT E Y AYADY D+M LTE++++
Sbjct: 249 VYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYKDIMKLTENMVA 293
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 93/127 (73%)
Query: 360 GDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINE 419
GD++G+ G KT GELS+ TLL+ L LP + G+KD E R+RQRYLDL+ +
Sbjct: 113 GDLVGIEGKVFKTNVGELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSM 172
Query: 420 RIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI 479
R F+ R++II +RRYLD G+LEVETPMM+ IAGGA+A+PF+THHN L+M+LYMRI
Sbjct: 173 ESRETFVTRSKIIREMRRYLDDNGYLEVETPMMHAIAGGASARPFITHHNALDMELYMRI 232
Query: 480 APELYLK 486
A EL+LK
Sbjct: 233 AIELHLK 239
>sp|Q73FD1|SYK_BACC1 Lysine--tRNA ligase OS=Bacillus cereus (strain ATCC 10987) GN=lysS
PE=3 SV=1
Length = 499
Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/285 (45%), Positives = 186/285 (65%), Gaps = 10/285 (3%)
Query: 46 LRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLEN-VTLSVAGRVHAIRE 104
+R + ++EQG P+ +F T++ + + Y + ++ E +++S+AGR+ R
Sbjct: 15 VRREKLHNLREQGIDPFGKRFERTNATNELLSLYGEFSKEELEEKEISVSIAGRIMTKRG 74
Query: 105 SGTKLMFY--DLRGEGLKIQVMANARMYQSEEEF-ASDLVKIKRGDIIGVTGSPGKTKKG 161
G + DL G+ ++I V +A + E F +DL GD++G+ G KT G
Sbjct: 75 KGKAGFAHIQDLHGQ-VQIYVRKDAVGDEEYELFKTADL-----GDLVGIEGKVFKTNVG 128
Query: 162 ELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221
ELS+ TLL+ L LP + G+KD E R+RQRYLDL+ + R F+ R++II +
Sbjct: 129 ELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSMESRETFVTRSKIIREM 188
Query: 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDR 281
RRYLD G+LEVETPMM+ IAGGA+A+PF+THHN L+M+LYMRIA EL+LK L+VGGL++
Sbjct: 189 RRYLDDNGYLEVETPMMHAIAGGASARPFITHHNALDMELYMRIAIELHLKRLIVGGLEK 248
Query: 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
VYE+GR FRNEG+ HNPEFT E Y AYADY D+M LTE++++
Sbjct: 249 VYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYKDIMKLTENMVA 293
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 93/127 (73%)
Query: 360 GDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINE 419
GD++G+ G KT GELS+ TLL+ L LP + G+KD E R+RQRYLDL+ +
Sbjct: 113 GDLVGIEGKVFKTNVGELSVKATGFTLLTKSLRPLPDKYHGLKDVEQRYRQRYLDLITSM 172
Query: 420 RIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI 479
R F+ R++II +RRYLD G+LEVETPMM+ IAGGA+A+PF+THHN L+M+LYMRI
Sbjct: 173 ESRETFVTRSKIIREMRRYLDDNGYLEVETPMMHAIAGGASARPFITHHNALDMELYMRI 232
Query: 480 APELYLK 486
A EL+LK
Sbjct: 233 AIELHLK 239
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,982,557
Number of Sequences: 539616
Number of extensions: 9312096
Number of successful extensions: 27896
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 176
Number of HSP's that attempted gapping in prelim test: 23722
Number of HSP's gapped (non-prelim): 2925
length of query: 553
length of database: 191,569,459
effective HSP length: 123
effective length of query: 430
effective length of database: 125,196,691
effective search space: 53834577130
effective search space used: 53834577130
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)