Query psy11418
Match_columns 553
No_of_seqs 409 out of 3272
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 17:54:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1885|consensus 100.0 8.3E-86 1.8E-90 676.9 26.6 359 34-549 48-406 (560)
2 COG1190 LysU Lysyl-tRNA synthe 100.0 8.5E-81 1.9E-85 654.3 30.8 289 38-328 8-297 (502)
3 PLN02502 lysyl-tRNA synthetase 100.0 7.7E-76 1.7E-80 641.5 37.4 290 38-328 56-346 (553)
4 TIGR00499 lysS_bact lysyl-tRNA 100.0 1.3E-74 2.8E-79 628.7 38.7 289 39-329 1-290 (496)
5 PRK12445 lysyl-tRNA synthetase 100.0 2E-74 4.3E-79 627.4 39.5 287 39-328 14-301 (505)
6 PTZ00417 lysine-tRNA ligase; P 100.0 3.6E-74 7.8E-79 630.3 41.2 294 34-328 76-370 (585)
7 PRK00484 lysS lysyl-tRNA synth 100.0 3E-72 6.5E-77 610.1 39.4 286 41-329 4-290 (491)
8 PRK02983 lysS lysyl-tRNA synth 100.0 6.6E-69 1.4E-73 626.5 38.5 280 39-329 609-888 (1094)
9 PTZ00385 lysyl-tRNA synthetase 100.0 9.9E-66 2.2E-70 565.1 37.0 265 64-329 81-351 (659)
10 PLN02850 aspartate-tRNA ligase 100.0 1.4E-55 3E-60 481.8 24.6 243 87-333 78-347 (530)
11 TIGR00458 aspS_arch aspartyl-t 100.0 5.9E-55 1.3E-59 468.5 26.3 238 89-332 11-253 (428)
12 PRK05159 aspC aspartyl-tRNA sy 100.0 1.1E-54 2.5E-59 468.0 26.1 235 89-332 15-257 (437)
13 PTZ00401 aspartyl-tRNA synthet 100.0 5.9E-55 1.3E-59 477.0 23.6 241 89-334 77-336 (550)
14 TIGR00459 aspS_bact aspartyl-t 100.0 7E-54 1.5E-58 470.1 26.4 237 89-334 14-261 (583)
15 COG0017 AsnS Aspartyl/asparagi 100.0 4.2E-53 9E-58 443.4 30.9 232 91-330 17-251 (435)
16 PRK03932 asnC asparaginyl-tRNA 100.0 7.1E-53 1.5E-57 455.1 25.5 238 88-332 14-261 (450)
17 TIGR00457 asnS asparaginyl-tRN 100.0 3.7E-52 8.1E-57 449.1 25.1 238 88-332 14-264 (453)
18 PLN02903 aminoacyl-tRNA ligase 100.0 5.9E-52 1.3E-56 456.5 26.9 251 67-332 58-325 (652)
19 PRK00476 aspS aspartyl-tRNA sy 100.0 1.2E-51 2.7E-56 455.6 27.3 248 68-333 4-263 (588)
20 PRK12820 bifunctional aspartyl 100.0 1.1E-51 2.5E-56 458.4 25.3 237 89-330 17-275 (706)
21 PLN02603 asparaginyl-tRNA synt 100.0 6.5E-50 1.4E-54 437.5 25.3 240 87-334 104-377 (565)
22 COG0173 AspS Aspartyl-tRNA syn 100.0 6E-50 1.3E-54 423.1 24.0 243 88-338 13-268 (585)
23 PLN02221 asparaginyl-tRNA synt 100.0 9E-50 1.9E-54 436.3 25.2 253 68-333 31-381 (572)
24 PTZ00425 asparagine-tRNA ligas 100.0 5E-48 1.1E-52 421.8 26.0 236 88-331 79-396 (586)
25 KOG0556|consensus 100.0 1.5E-47 3.3E-52 388.4 17.1 243 88-336 80-353 (533)
26 PLN02532 asparagine-tRNA synth 100.0 1.6E-46 3.5E-51 411.8 21.4 220 102-332 129-443 (633)
27 KOG0555|consensus 100.0 1.7E-43 3.8E-48 357.6 16.5 289 17-329 62-359 (545)
28 KOG2411|consensus 100.0 1.4E-40 3E-45 344.7 19.9 242 88-336 45-304 (628)
29 KOG0554|consensus 100.0 1.8E-40 3.8E-45 337.4 14.8 229 88-330 18-258 (446)
30 cd00775 LysRS_core Lys_tRNA sy 100.0 3.4E-35 7.3E-40 306.1 20.5 125 204-328 1-125 (329)
31 PF00152 tRNA-synt_2: tRNA syn 100.0 1E-35 2.2E-40 311.4 12.4 143 189-332 1-147 (335)
32 cd00776 AsxRS_core Asx tRNA sy 100.0 7.6E-35 1.6E-39 302.7 11.3 140 189-332 3-144 (322)
33 PRK06462 asparagine synthetase 100.0 9E-35 1.9E-39 303.4 11.8 141 189-332 9-158 (335)
34 PRK12445 lysyl-tRNA synthetase 100.0 4.1E-32 9E-37 296.0 16.5 171 325-496 85-256 (505)
35 KOG1885|consensus 100.0 3.8E-33 8.3E-38 288.1 7.9 171 326-496 126-297 (560)
36 TIGR00499 lysS_bact lysyl-tRNA 100.0 5.7E-32 1.2E-36 294.8 16.3 170 325-496 73-244 (496)
37 COG1190 LysU Lysyl-tRNA synthe 100.0 3.4E-32 7.3E-37 287.2 13.6 171 325-496 81-252 (502)
38 PRK05159 aspC aspartyl-tRNA sy 100.0 3.4E-31 7.5E-36 285.8 20.2 216 325-548 36-314 (437)
39 PTZ00417 lysine-tRNA ligase; P 100.0 1.5E-31 3.3E-36 294.1 16.8 171 325-496 153-325 (585)
40 PLN02502 lysyl-tRNA synthetase 100.0 1.4E-31 3.1E-36 293.4 16.2 172 325-496 128-301 (553)
41 TIGR00462 genX lysyl-tRNA synt 100.0 3.7E-32 7.9E-37 280.4 9.3 121 211-331 1-125 (304)
42 TIGR00458 aspS_arch aspartyl-t 100.0 6.3E-31 1.4E-35 282.7 19.1 219 325-550 32-312 (428)
43 PRK00484 lysS lysyl-tRNA synth 100.0 3E-31 6.5E-36 289.2 15.8 170 325-496 74-244 (491)
44 TIGR00459 aspS_bact aspartyl-t 100.0 1.4E-30 3.1E-35 286.4 17.8 196 325-529 35-282 (583)
45 COG0173 AspS Aspartyl-tRNA syn 100.0 1.9E-30 4.2E-35 275.2 15.3 215 303-531 19-287 (585)
46 PRK00476 aspS aspartyl-tRNA sy 100.0 5.5E-30 1.2E-34 283.6 18.0 199 325-533 37-288 (588)
47 PTZ00385 lysyl-tRNA synthetase 100.0 5.6E-30 1.2E-34 282.7 16.9 172 325-496 127-305 (659)
48 PRK02983 lysS lysyl-tRNA synth 100.0 4.3E-30 9.3E-35 301.1 15.2 171 325-496 671-842 (1094)
49 PLN02903 aminoacyl-tRNA ligase 100.0 1.2E-29 2.6E-34 280.1 16.9 197 325-528 92-347 (652)
50 PLN02532 asparagine-tRNA synth 100.0 2.2E-29 4.8E-34 276.9 18.8 216 325-549 137-515 (633)
51 PRK12820 bifunctional aspartyl 100.0 2E-29 4.4E-34 280.9 18.0 200 325-533 38-302 (706)
52 PLN02850 aspartate-tRNA ligase 100.0 3.8E-29 8.2E-34 274.0 18.7 217 325-546 101-405 (530)
53 PRK03932 asnC asparaginyl-tRNA 100.0 5.7E-29 1.2E-33 269.2 18.6 174 325-503 36-234 (450)
54 cd00669 Asp_Lys_Asn_RS_core As 100.0 3.9E-29 8.5E-34 253.4 12.1 122 211-332 1-122 (269)
55 PTZ00401 aspartyl-tRNA synthet 100.0 1.7E-28 3.6E-33 269.1 17.7 166 325-496 98-283 (550)
56 COG0017 AsnS Aspartyl/asparagi 100.0 9.5E-29 2.1E-33 260.0 14.1 169 325-501 36-210 (435)
57 TIGR00457 asnS asparaginyl-tRN 100.0 3E-28 6.6E-33 263.4 18.4 221 325-550 36-336 (453)
58 PLN02221 asparaginyl-tRNA synt 100.0 2.7E-28 5.9E-33 267.5 18.2 216 325-549 72-454 (572)
59 cd00777 AspRS_core Asp tRNA sy 100.0 1.5E-28 3.3E-33 250.5 11.3 121 211-332 1-122 (280)
60 PTZ00425 asparagine-tRNA ligas 100.0 1.6E-27 3.5E-32 261.0 20.0 218 325-549 103-468 (586)
61 PRK09350 poxB regulator PoxA; 100.0 2E-28 4.4E-33 252.8 10.9 124 208-331 2-130 (306)
62 PLN02603 asparaginyl-tRNA synt 99.9 2.5E-27 5.4E-32 260.0 16.4 219 325-550 127-447 (565)
63 KOG0556|consensus 99.9 4E-26 8.7E-31 232.7 15.2 213 330-547 107-409 (533)
64 COG2269 Truncated, possibly in 99.9 2.2E-24 4.7E-29 212.4 10.1 120 210-329 15-139 (322)
65 cd04322 LysRS_N LysRS_N: N-ter 99.9 7E-23 1.5E-27 180.2 13.3 108 92-201 1-108 (108)
66 KOG2411|consensus 99.9 1.2E-22 2.7E-27 211.6 12.8 195 327-528 69-322 (628)
67 KOG0554|consensus 99.9 5.3E-22 1.2E-26 202.9 16.3 207 333-551 50-334 (446)
68 PF00152 tRNA-synt_2: tRNA syn 99.8 2.1E-21 4.5E-26 203.5 6.9 130 403-533 1-182 (335)
69 PRK06462 asparagine synthetase 99.8 2.5E-20 5.4E-25 194.9 11.4 144 402-547 8-214 (335)
70 cd00776 AsxRS_core Asx tRNA sy 99.8 4.2E-20 9.2E-25 192.4 12.8 144 403-549 3-207 (322)
71 cd04317 EcAspRS_like_N EcAspRS 99.8 2.5E-19 5.5E-24 163.8 12.7 109 89-203 13-132 (135)
72 KOG0555|consensus 99.8 3E-19 6.4E-24 182.1 10.9 212 325-546 143-416 (545)
73 cd04319 PhAsnRS_like_N PhAsnRS 99.7 4.4E-17 9.5E-22 142.1 13.1 101 92-199 1-103 (103)
74 cd04320 AspRS_cyto_N AspRS_cyt 99.7 6.5E-17 1.4E-21 140.7 13.0 92 92-183 1-99 (102)
75 TIGR00462 genX lysyl-tRNA synt 99.7 3.9E-17 8.4E-22 168.8 10.5 124 425-551 1-163 (304)
76 COG2269 Truncated, possibly in 99.7 2.6E-17 5.6E-22 162.7 8.5 125 423-551 14-177 (322)
77 cd04316 ND_PkAspRS_like_N ND_P 99.7 3.7E-16 8E-21 137.4 13.8 93 89-184 11-105 (108)
78 cd00775 LysRS_core Lys_tRNA sy 99.6 4.4E-16 9.5E-21 162.7 9.1 79 418-496 1-80 (329)
79 cd00777 AspRS_core Asp tRNA sy 99.6 1E-15 2.2E-20 156.4 8.5 108 425-535 1-150 (280)
80 PRK09350 poxB regulator PoxA; 99.6 2.4E-15 5.3E-20 155.6 9.6 127 422-551 2-166 (306)
81 cd04100 Asp_Lys_Asn_RS_N Asp_L 99.6 1.4E-14 3.1E-19 121.8 11.1 79 93-175 2-85 (85)
82 cd04321 ScAspRS_mt_like_N ScAs 99.5 3.9E-14 8.5E-19 119.5 11.0 78 92-175 1-86 (86)
83 cd00669 Asp_Lys_Asn_RS_core As 99.5 2.7E-14 5.8E-19 145.2 9.7 104 425-528 1-154 (269)
84 cd04318 EcAsnRS_like_N EcAsnRS 99.5 1.2E-13 2.7E-18 115.3 10.8 77 93-175 2-82 (82)
85 cd04323 AsnRS_cyto_like_N AsnR 99.5 1.6E-13 3.5E-18 115.2 11.2 79 92-175 1-84 (84)
86 PRK09537 pylS pyrolysyl-tRNA s 99.3 5.8E-12 1.3E-16 133.8 10.7 136 188-328 180-333 (417)
87 cd04322 LysRS_N LysRS_N: N-ter 99.1 7.2E-11 1.6E-15 103.8 6.3 90 325-415 19-108 (108)
88 cd00768 class_II_aaRS-like_cor 99.1 2E-10 4.3E-15 111.2 9.2 116 213-328 1-132 (211)
89 PF01336 tRNA_anti-codon: OB-f 99.1 2.3E-09 4.9E-14 86.9 11.4 75 93-173 1-75 (75)
90 cd04317 EcAspRS_like_N EcAspRS 98.9 1.2E-09 2.6E-14 99.8 5.8 90 325-420 34-134 (135)
91 TIGR02367 PylS pyrrolysyl-tRNA 98.9 6E-09 1.3E-13 110.9 11.2 112 212-328 240-369 (453)
92 cd00773 HisRS-like_core Class 98.7 1.3E-07 2.7E-12 96.0 12.1 127 212-341 3-146 (261)
93 cd04319 PhAsnRS_like_N PhAsnRS 98.7 3.6E-08 7.7E-13 86.0 6.3 83 325-413 19-103 (103)
94 cd00496 PheRS_alpha_core Pheny 98.6 2.3E-07 4.9E-12 91.8 11.1 108 216-328 5-131 (218)
95 PF01409 tRNA-synt_2d: tRNA sy 98.6 1.9E-07 4.1E-12 94.0 10.2 114 216-329 21-154 (247)
96 COG0124 HisS Histidyl-tRNA syn 98.6 2.4E-07 5.3E-12 99.6 11.0 134 210-345 17-169 (429)
97 TIGR00442 hisS histidyl-tRNA s 98.5 4.2E-07 9.1E-12 97.6 11.4 133 209-344 12-164 (397)
98 PF00587 tRNA-synt_2b: tRNA sy 98.5 1.2E-06 2.5E-11 83.3 12.4 114 213-328 1-134 (173)
99 cd00670 Gly_His_Pro_Ser_Thr_tR 98.5 5.9E-07 1.3E-11 89.1 10.1 116 212-328 3-146 (235)
100 CHL00201 syh histidine-tRNA sy 98.5 9.8E-07 2.1E-11 95.9 12.1 132 210-344 17-169 (430)
101 PRK12292 hisZ ATP phosphoribos 98.4 8.4E-07 1.8E-11 95.3 10.4 133 209-344 15-165 (391)
102 PLN02972 Histidyl-tRNA synthet 98.4 1.3E-06 2.9E-11 99.3 11.5 133 209-344 339-485 (763)
103 PLN02530 histidine-tRNA ligase 98.4 1.4E-06 3.1E-11 96.1 11.0 132 210-344 83-233 (487)
104 cd00772 ProRS_core Prolyl-tRNA 98.4 5.1E-06 1.1E-10 84.6 13.6 121 212-333 33-179 (264)
105 TIGR00468 pheS phenylalanyl-tR 98.4 1.2E-06 2.7E-11 90.4 9.2 113 216-328 76-201 (294)
106 PTZ00326 phenylalanyl-tRNA syn 98.4 1.8E-06 3.8E-11 94.1 10.6 49 280-328 358-408 (494)
107 PRK00037 hisS histidyl-tRNA sy 98.3 2.8E-06 6.1E-11 91.7 11.7 125 210-337 17-158 (412)
108 TIGR00443 hisZ_biosyn_reg ATP 98.3 3.3E-06 7.1E-11 88.1 11.3 132 210-344 7-154 (314)
109 PRK04172 pheS phenylalanyl-tRN 98.3 3E-06 6.5E-11 93.6 11.2 117 212-328 233-401 (489)
110 PRK12421 ATP phosphoribosyltra 98.3 4E-06 8.6E-11 90.1 11.5 132 210-344 20-168 (392)
111 PRK00488 pheS phenylalanyl-tRN 98.3 3.2E-06 7E-11 88.1 10.4 113 216-329 112-237 (339)
112 cd00774 GlyRS-like_core Glycyl 98.3 1.5E-06 3.3E-11 87.9 7.6 112 211-328 32-165 (254)
113 PF13393 tRNA-synt_His: Histid 98.3 4.6E-06 1E-10 86.5 11.1 133 209-344 8-156 (311)
114 cd04320 AspRS_cyto_N AspRS_cyt 98.3 2E-06 4.3E-11 74.8 6.6 74 325-398 20-100 (102)
115 PRK12293 hisZ ATP phosphoribos 98.3 6.4E-06 1.4E-10 84.6 11.2 125 210-344 18-152 (281)
116 cd00779 ProRS_core_prok Prolyl 98.2 6.8E-06 1.5E-10 83.2 10.8 113 211-324 31-161 (255)
117 PRK12420 histidyl-tRNA synthet 98.2 5.5E-06 1.2E-10 89.9 10.7 130 210-343 17-164 (423)
118 PLN02853 Probable phenylalanyl 98.2 6.1E-06 1.3E-10 89.6 10.1 57 281-341 344-402 (492)
119 cd00778 ProRS_core_arch_euk Pr 98.2 3.7E-06 8.1E-11 85.4 7.0 116 211-326 32-169 (261)
120 COG0016 PheS Phenylalanyl-tRNA 98.1 7E-06 1.5E-10 85.2 8.8 111 217-329 116-244 (335)
121 cd04316 ND_PkAspRS_like_N ND_P 98.1 5.1E-06 1.1E-10 73.0 6.4 73 325-399 32-106 (108)
122 PRK09194 prolyl-tRNA synthetas 98.1 1.4E-05 2.9E-10 90.0 11.4 108 210-318 46-171 (565)
123 cd00771 ThrRS_core Threonyl-tR 98.1 2.2E-05 4.8E-10 81.3 12.0 127 211-341 30-181 (298)
124 TIGR00409 proS_fam_II prolyl-t 98.0 2.2E-05 4.8E-10 88.1 11.1 126 210-336 46-192 (568)
125 PRK12295 hisZ ATP phosphoribos 98.0 2.4E-05 5.3E-10 83.4 10.9 124 215-344 8-147 (373)
126 PLN02788 phenylalanine-tRNA sy 98.0 2.7E-05 5.8E-10 83.2 10.0 113 217-329 73-211 (402)
127 PRK00413 thrS threonyl-tRNA sy 98.0 3.4E-05 7.4E-10 88.0 11.0 131 209-342 268-423 (638)
128 PLN02908 threonyl-tRNA synthet 97.9 3.8E-05 8.3E-10 88.2 10.8 113 209-324 319-450 (686)
129 TIGR00418 thrS threonyl-tRNA s 97.9 5E-05 1.1E-09 85.4 11.5 129 210-341 199-352 (563)
130 PRK14799 thrS threonyl-tRNA sy 97.9 3E-05 6.5E-10 86.4 9.6 105 210-317 167-290 (545)
131 PRK12305 thrS threonyl-tRNA sy 97.9 4.6E-05 1E-09 85.9 10.9 130 210-342 205-359 (575)
132 PRK12444 threonyl-tRNA synthet 97.8 6.1E-05 1.3E-09 86.0 10.3 115 211-328 274-414 (639)
133 PRK08661 prolyl-tRNA synthetas 97.8 7.9E-05 1.7E-09 82.1 9.4 115 210-325 43-179 (477)
134 TIGR00408 proS_fam_I prolyl-tR 97.8 6.4E-05 1.4E-09 82.7 8.4 114 212-325 39-174 (472)
135 KOG1936|consensus 97.8 9E-05 2E-09 78.1 8.8 134 209-345 72-221 (518)
136 TIGR00414 serS seryl-tRNA synt 97.7 0.00016 3.4E-09 78.5 10.7 112 210-326 172-305 (418)
137 PRK12325 prolyl-tRNA synthetas 97.7 0.00014 3.1E-09 79.3 9.9 114 211-325 47-178 (439)
138 PRK05431 seryl-tRNA synthetase 97.7 0.00022 4.8E-09 77.5 10.3 112 210-326 169-303 (425)
139 PRK03991 threonyl-tRNA synthet 97.7 0.00025 5.4E-09 80.3 11.0 126 209-336 225-373 (613)
140 KOG2784|consensus 97.6 7.1E-05 1.5E-09 77.2 5.6 52 277-328 329-384 (483)
141 cd00770 SerRS_core Seryl-tRNA 97.6 0.00025 5.5E-09 73.4 9.7 111 210-325 51-183 (297)
142 PRK12294 hisZ ATP phosphoribos 97.4 0.0011 2.3E-08 67.9 10.2 98 208-312 4-110 (272)
143 cd04489 ExoVII_LU_OBF ExoVII_L 97.4 0.0022 4.7E-08 52.4 10.1 73 93-171 2-75 (78)
144 cd04321 ScAspRS_mt_like_N ScAs 97.3 0.00036 7.9E-09 58.7 4.9 60 325-389 20-86 (86)
145 PLN02837 threonine-tRNA ligase 97.3 0.0011 2.4E-08 75.3 10.1 125 209-335 245-391 (614)
146 cd04100 Asp_Lys_Asn_RS_N Asp_L 97.3 0.00036 7.8E-09 58.4 4.6 61 326-389 20-85 (85)
147 PLN02678 seryl-tRNA synthetase 97.2 0.0014 3E-08 71.4 10.0 116 210-328 173-319 (448)
148 COG0442 ProS Prolyl-tRNA synth 97.1 0.002 4.2E-08 70.9 8.9 115 210-325 46-178 (500)
149 PRK04173 glycyl-tRNA synthetas 97.0 0.0016 3.6E-08 71.4 8.2 41 281-322 188-231 (456)
150 PLN02320 seryl-tRNA synthetase 96.8 0.0055 1.2E-07 67.4 9.6 112 212-328 234-368 (502)
151 cd04323 AsnRS_cyto_like_N AsnR 96.8 0.0018 3.8E-08 54.2 4.4 61 325-389 19-84 (84)
152 cd04487 RecJ_OBF2_like RecJ_OB 96.7 0.0096 2.1E-07 48.7 8.2 73 93-173 1-73 (73)
153 TIGR00470 sepS O-phosphoseryl- 96.7 0.002 4.2E-08 69.6 5.0 49 280-328 208-259 (533)
154 cd04318 EcAsnRS_like_N EcAsnRS 96.7 0.0026 5.7E-08 52.8 4.8 57 327-388 21-81 (82)
155 TIGR00415 serS_MJ seryl-tRNA s 96.5 0.025 5.4E-07 62.1 11.8 118 210-328 222-387 (520)
156 cd04485 DnaE_OBF DnaE_OBF: A s 96.4 0.022 4.7E-07 46.2 8.7 72 95-173 2-77 (84)
157 COG3705 HisZ ATP phosphoribosy 96.3 0.0096 2.1E-07 63.6 7.3 126 211-339 17-157 (390)
158 cd04478 RPA2_DBD_D RPA2_DBD_D: 96.3 0.044 9.6E-07 46.5 10.1 77 93-174 2-78 (95)
159 PF13742 tRNA_anti_2: OB-fold 96.3 0.033 7.2E-07 48.2 9.3 75 91-171 22-98 (99)
160 COG0172 SerS Seryl-tRNA synthe 96.1 0.074 1.6E-06 57.5 12.7 114 212-328 175-315 (429)
161 cd03524 RPA2_OBF_family RPA2_O 96.0 0.06 1.3E-06 42.0 9.0 70 94-170 1-73 (75)
162 COG0441 ThrS Threonyl-tRNA syn 96.0 0.0053 1.1E-07 68.9 3.6 111 212-325 221-350 (589)
163 cd04492 YhaM_OBF_like YhaM_OBF 95.9 0.13 2.8E-06 41.9 10.7 64 104-175 15-78 (83)
164 PRK09616 pheT phenylalanyl-tRN 95.8 0.05 1.1E-06 61.3 10.7 111 215-328 362-489 (552)
165 cd04482 RPA2_OBF_like RPA2_OBF 95.8 0.052 1.1E-06 46.3 8.3 74 94-176 2-77 (91)
166 PRK00960 seryl-tRNA synthetase 95.7 0.025 5.5E-07 62.7 7.6 118 210-328 222-387 (517)
167 PRK07373 DNA polymerase III su 95.6 0.067 1.4E-06 58.6 10.2 78 89-173 279-360 (449)
168 KOG2324|consensus 95.5 0.04 8.7E-07 57.4 7.6 130 211-341 52-203 (457)
169 TIGR00469 pheS_mito phenylalan 95.5 0.056 1.2E-06 58.8 8.9 56 256-311 103-165 (460)
170 TIGR00389 glyS_dimeric glycyl- 95.2 0.035 7.7E-07 62.0 6.6 28 212-239 38-66 (551)
171 cd04483 hOBFC1_like hOBFC1_lik 95.2 0.14 3E-06 43.7 8.8 75 95-171 2-90 (92)
172 cd04490 PolII_SU_OBF PolII_SU_ 95.2 0.22 4.8E-06 41.3 9.6 70 93-170 2-72 (79)
173 PRK06826 dnaE DNA polymerase I 94.9 0.17 3.8E-06 61.4 11.7 81 89-175 990-1074(1151)
174 PF10451 Stn1: Telomere regula 94.7 0.11 2.4E-06 52.7 8.0 76 91-174 67-148 (256)
175 PRK09537 pylS pyrolysyl-tRNA s 94.7 0.037 8E-07 59.7 4.6 80 402-486 180-271 (417)
176 PF01336 tRNA_anti-codon: OB-f 94.5 0.062 1.3E-06 42.9 4.6 54 328-387 22-75 (75)
177 PF04076 BOF: Bacterial OB fol 94.5 0.37 8E-06 42.1 9.6 70 89-171 33-102 (103)
178 PRK05672 dnaE2 error-prone DNA 94.3 0.19 4.2E-06 60.5 10.1 81 89-176 952-1034(1046)
179 PRK07374 dnaE DNA polymerase I 94.1 0.22 4.7E-06 60.6 10.1 78 89-173 999-1080(1170)
180 COG0423 GRS1 Glycyl-tRNA synth 94.1 0.12 2.7E-06 56.6 7.1 30 281-310 189-221 (558)
181 PRK06920 dnaE DNA polymerase I 94.1 0.21 4.4E-06 60.4 9.6 79 89-174 942-1024(1107)
182 PRK05673 dnaE DNA polymerase I 93.9 0.23 5E-06 60.3 9.7 81 89-176 976-1060(1135)
183 cd00769 PheRS_beta_core Phenyl 93.0 0.36 7.7E-06 46.8 7.8 109 216-328 4-137 (198)
184 PRK07279 dnaE DNA polymerase I 92.8 0.45 9.7E-06 57.1 9.6 75 90-171 884-963 (1034)
185 PRK14894 glycyl-tRNA synthetas 92.6 0.51 1.1E-05 52.1 8.9 99 212-310 41-199 (539)
186 TIGR00156 conserved hypothetic 92.6 0.91 2E-05 41.1 9.1 70 89-171 56-125 (126)
187 COG3111 Periplasmic protein wi 92.5 0.77 1.7E-05 41.0 8.3 72 89-173 56-127 (128)
188 cd04488 RecG_wedge_OBF RecG_we 92.3 1 2.2E-05 35.4 8.3 68 95-170 2-72 (75)
189 PRK10053 hypothetical protein; 92.2 0.88 1.9E-05 41.4 8.6 70 89-171 60-129 (130)
190 PRK10917 ATP-dependent DNA hel 92.0 1.7 3.6E-05 50.4 12.8 96 61-172 39-136 (681)
191 cd00768 class_II_aaRS-like_cor 91.9 0.21 4.5E-06 48.0 4.5 62 428-489 2-67 (211)
192 KOG1035|consensus 91.3 0.57 1.2E-05 56.1 7.9 119 211-334 932-1061(1351)
193 cd04484 polC_OBF polC_OBF: A s 91.0 2.8 6E-05 34.9 9.8 73 93-171 2-80 (82)
194 COG1107 Archaea-specific RecJ- 90.1 0.45 9.8E-06 52.7 5.3 78 88-173 211-288 (715)
195 cd04474 RPA1_DBD_A RPA1_DBD_A: 89.7 1.2 2.5E-05 38.8 6.8 58 92-156 11-78 (104)
196 PRK00286 xseA exodeoxyribonucl 89.5 1.4 3.1E-05 48.1 8.9 78 91-174 24-102 (438)
197 PF12869 tRNA_anti-like: tRNA_ 89.0 0.87 1.9E-05 41.6 5.7 85 69-158 44-132 (144)
198 PRK15491 replication factor A; 88.8 2.2 4.8E-05 45.8 9.4 82 91-178 68-158 (374)
199 cd04479 RPA3 RPA3: A subfamily 88.4 4.5 9.8E-05 35.0 9.5 65 89-174 14-79 (101)
200 PRK13480 3'-5' exoribonuclease 88.3 5.6 0.00012 41.7 11.8 65 104-176 29-93 (314)
201 COG5235 RFA2 Single-stranded D 88.3 2.8 6.1E-05 40.8 8.7 74 92-171 68-141 (258)
202 PRK14699 replication factor A; 87.6 2.7 5.9E-05 46.6 9.4 83 90-180 67-160 (484)
203 COG1570 XseA Exonuclease VII, 87.4 1.9 4.1E-05 46.9 7.8 75 92-172 25-100 (440)
204 COG4085 Predicted RNA-binding 87.1 2.2 4.7E-05 41.1 7.1 75 89-168 50-128 (204)
205 KOG2509|consensus 86.9 2.5 5.4E-05 45.6 8.2 118 210-328 184-328 (455)
206 TIGR00237 xseA exodeoxyribonuc 85.6 3.1 6.8E-05 45.5 8.5 75 92-172 19-94 (432)
207 PRK06461 single-stranded DNA-b 85.2 7.5 0.00016 35.2 9.5 75 91-175 15-100 (129)
208 cd04491 SoSSB_OBF SoSSB_OBF: A 84.4 6.4 0.00014 32.3 8.0 53 108-170 23-76 (82)
209 TIGR00471 pheT_arch phenylalan 84.0 4.1 8.9E-05 46.0 8.8 115 214-328 364-491 (551)
210 PRK12366 replication factor A; 83.0 4.9 0.00011 46.3 9.0 77 89-173 290-380 (637)
211 PRK07459 single-stranded DNA-b 82.7 13 0.00029 33.2 9.9 79 92-176 5-104 (121)
212 PRK04036 DNA polymerase II sma 80.1 18 0.0004 40.4 12.0 109 40-171 119-227 (504)
213 PRK07211 replication factor A; 80.0 10 0.00022 42.1 9.6 72 91-170 64-146 (485)
214 PF08661 Rep_fac-A_3: Replicat 79.2 8.4 0.00018 33.7 7.2 55 88-157 16-71 (109)
215 TIGR00643 recG ATP-dependent D 78.9 11 0.00024 43.2 10.1 88 61-166 12-103 (630)
216 PF00436 SSB: Single-strand bi 78.7 13 0.00029 31.4 8.3 48 120-173 49-104 (104)
217 PRK08486 single-stranded DNA-b 78.6 15 0.00033 35.4 9.3 52 119-176 49-108 (182)
218 PRK06863 single-stranded DNA-b 78.4 12 0.00027 35.6 8.5 79 92-176 6-111 (168)
219 PRK07275 single-stranded DNA-b 78.1 19 0.00041 34.1 9.7 79 92-176 4-106 (162)
220 COG1200 RecG RecG-like helicas 76.9 19 0.00041 41.3 10.8 79 88-174 58-139 (677)
221 PF15072 DUF4539: Domain of un 76.8 11 0.00023 31.9 6.8 53 94-153 6-58 (86)
222 PF03100 CcmE: CcmE; InterPro 76.7 32 0.0007 31.2 10.5 72 89-177 49-124 (131)
223 PRK12366 replication factor A; 76.5 10 0.00022 43.7 8.8 71 92-169 75-154 (637)
224 PRK07135 dnaE DNA polymerase I 76.4 6 0.00013 47.5 7.1 64 89-159 896-962 (973)
225 KOG3108|consensus 75.4 19 0.0004 36.9 9.4 77 91-173 69-145 (265)
226 PRK06752 single-stranded DNA-b 75.4 29 0.00062 30.5 9.6 51 120-176 48-106 (112)
227 PRK15491 replication factor A; 74.7 11 0.00024 40.5 8.0 79 92-177 178-267 (374)
228 cd00773 HisRS-like_core Class 74.2 3.3 7.1E-05 41.9 3.7 32 425-456 2-33 (261)
229 PRK06293 single-stranded DNA-b 74.0 29 0.00064 32.8 9.7 52 119-176 43-102 (161)
230 PRK06751 single-stranded DNA-b 73.8 28 0.00061 33.3 9.7 50 120-175 48-105 (173)
231 PF00587 tRNA-synt_2b: tRNA sy 73.6 3.6 7.8E-05 38.8 3.6 58 427-487 1-69 (173)
232 PRK07211 replication factor A; 73.4 15 0.00032 40.8 8.7 80 91-177 172-260 (485)
233 PRK14699 replication factor A; 73.3 16 0.00036 40.6 9.1 80 91-177 177-267 (484)
234 cd05707 S1_Rrp5_repeat_sc11 S1 71.3 11 0.00024 29.6 5.4 52 94-152 3-54 (68)
235 PLN02265 probable phenylalanyl 71.0 15 0.00032 42.0 8.4 115 214-328 399-528 (597)
236 PRK07218 replication factor A; 70.7 25 0.00054 38.5 9.6 73 92-175 174-253 (423)
237 PRK07217 replication factor A; 70.7 33 0.00071 35.8 10.0 82 90-181 82-166 (311)
238 PRK08402 replication factor A; 70.6 24 0.00052 37.6 9.3 77 91-173 73-159 (355)
239 TIGR00621 ssb single stranded 70.5 38 0.00082 32.0 9.7 79 92-176 6-110 (164)
240 PRK02801 primosomal replicatio 70.4 41 0.0009 29.0 9.2 48 120-173 49-100 (101)
241 PRK08763 single-stranded DNA-b 68.5 32 0.0007 32.6 8.7 79 92-176 7-111 (164)
242 PRK13254 cytochrome c-type bio 68.2 50 0.0011 30.8 9.8 74 88-178 49-125 (148)
243 PRK07218 replication factor A; 66.5 32 0.00069 37.6 9.4 69 90-170 68-143 (423)
244 cd05694 S1_Rrp5_repeat_hs2_sc2 66.4 33 0.00072 27.8 7.3 47 94-152 7-53 (74)
245 TIGR00617 rpa1 replication fac 65.8 20 0.00044 41.0 8.1 79 92-177 192-286 (608)
246 COG1571 Predicted DNA-binding 65.3 31 0.00068 37.5 8.8 73 91-173 267-341 (421)
247 KOG1637|consensus 65.0 4.1 8.8E-05 44.4 2.1 106 212-323 193-320 (560)
248 PF15490 Ten1_2: Telomere-capp 64.3 71 0.0015 28.6 9.6 80 85-173 16-96 (118)
249 cd05698 S1_Rrp5_repeat_hs6_sc5 64.0 29 0.00063 27.1 6.5 52 94-152 3-54 (70)
250 TIGR02367 PylS pyrrolysyl-tRNA 63.2 7.5 0.00016 42.5 3.8 27 427-453 241-267 (453)
251 cd00670 Gly_His_Pro_Ser_Thr_tR 62.8 8.4 0.00018 37.8 3.8 31 426-456 3-33 (235)
252 PRK13732 single-stranded DNA-b 62.6 45 0.00098 32.0 8.6 79 92-176 8-115 (175)
253 PLN02734 glycyl-tRNA synthetas 62.3 2.8 6.1E-05 48.1 0.4 52 258-309 246-308 (684)
254 PRK07080 hypothetical protein; 62.1 7.5 0.00016 40.5 3.4 47 281-328 153-201 (317)
255 PRK05813 single-stranded DNA-b 61.7 64 0.0014 32.1 9.7 80 91-177 110-211 (219)
256 CHL00192 syfB phenylalanyl-tRN 61.6 28 0.00061 40.6 8.3 109 215-328 401-530 (704)
257 PRK00629 pheT phenylalanyl-tRN 61.6 27 0.00059 41.3 8.4 109 216-328 491-622 (791)
258 PRK06386 replication factor A; 61.5 51 0.0011 35.3 9.5 73 92-177 119-198 (358)
259 PRK13165 cytochrome c-type bio 59.7 1.1E+02 0.0024 28.9 10.4 75 88-179 55-133 (160)
260 PF13393 tRNA-synt_His: Histid 59.7 10 0.00022 39.2 3.9 63 421-488 6-76 (311)
261 cd05691 S1_RPS1_repeat_ec6 S1_ 59.2 35 0.00076 26.7 6.2 52 94-152 3-54 (73)
262 PRK06642 single-stranded DNA-b 57.7 1.2E+02 0.0026 28.3 10.3 79 92-175 7-116 (152)
263 cd04452 S1_IF2_alpha S1_IF2_al 57.1 22 0.00048 28.2 4.7 54 94-152 6-59 (76)
264 TIGR00443 hisZ_biosyn_reg ATP 56.5 11 0.00023 39.3 3.5 34 423-456 6-39 (314)
265 cd00778 ProRS_core_arch_euk Pr 56.3 12 0.00026 38.0 3.7 33 424-456 31-63 (261)
266 PRK06958 single-stranded DNA-b 56.0 69 0.0015 30.9 8.6 51 120-176 53-111 (182)
267 PRK04173 glycyl-tRNA synthetas 54.9 12 0.00025 41.4 3.6 32 425-456 38-71 (456)
268 PF03459 TOBE: TOBE domain; I 54.5 73 0.0016 24.4 7.2 50 94-152 6-56 (64)
269 PRK13150 cytochrome c-type bio 54.3 1.4E+02 0.0029 28.3 10.0 74 89-179 56-133 (159)
270 PRK12421 ATP phosphoribosyltra 54.1 14 0.0003 40.0 3.9 36 421-456 17-52 (392)
271 cd00774 GlyRS-like_core Glycyl 53.7 14 0.00031 37.3 3.8 32 424-455 31-64 (254)
272 TIGR00442 hisS histidyl-tRNA s 53.4 13 0.00029 39.8 3.7 35 422-456 11-45 (397)
273 cd00779 ProRS_core_prok Prolyl 53.2 16 0.00034 37.0 4.0 33 424-456 30-62 (255)
274 TIGR00594 polc DNA-directed DN 52.9 23 0.0005 43.1 5.9 37 89-125 980-1021(1022)
275 TIGR00472 pheT_bact phenylalan 52.8 40 0.00086 40.0 7.8 106 219-328 498-629 (798)
276 TIGR01405 polC_Gram_pos DNA po 52.6 88 0.0019 38.9 10.7 81 90-174 7-92 (1213)
277 PRK12293 hisZ ATP phosphoribos 52.1 16 0.00035 37.6 3.9 35 422-456 16-50 (281)
278 PRK08582 hypothetical protein; 52.0 56 0.0012 30.0 7.0 68 94-170 8-76 (139)
279 cd00771 ThrRS_core Threonyl-tR 51.8 17 0.00036 37.7 4.0 33 424-456 29-61 (298)
280 PRK12292 hisZ ATP phosphoribos 51.7 14 0.00031 39.8 3.6 36 421-456 13-48 (391)
281 PRK00448 polC DNA polymerase I 51.3 87 0.0019 39.6 10.5 80 90-173 236-320 (1437)
282 PRK07252 hypothetical protein; 50.3 56 0.0012 29.2 6.6 67 94-169 6-74 (120)
283 CHL00201 syh histidine-tRNA sy 50.3 16 0.00035 39.9 3.8 35 422-456 15-49 (430)
284 cd05697 S1_Rrp5_repeat_hs5 S1_ 50.2 34 0.00074 26.8 4.7 52 94-152 3-54 (69)
285 cd05685 S1_Tex S1_Tex: The C-t 50.2 31 0.00067 26.3 4.4 52 94-152 3-54 (68)
286 COG0072 PheT Phenylalanyl-tRNA 49.8 27 0.00057 40.4 5.5 112 213-328 352-487 (650)
287 PRK12294 hisZ ATP phosphoribos 49.7 20 0.00044 36.7 4.2 34 422-455 4-37 (272)
288 cd04487 RecJ_OBF2_like RecJ_OB 48.9 23 0.0005 28.8 3.5 34 353-387 40-73 (73)
289 cd04472 S1_PNPase S1_PNPase: P 48.8 33 0.00071 26.3 4.4 52 94-152 3-54 (68)
290 cd00772 ProRS_core Prolyl-tRNA 48.7 20 0.00043 36.5 3.9 32 425-456 32-63 (264)
291 cd05708 S1_Rrp5_repeat_sc12 S1 48.4 58 0.0013 25.6 5.9 53 94-152 5-57 (77)
292 PRK07274 single-stranded DNA-b 48.3 1.3E+02 0.0028 27.2 8.8 36 139-174 61-103 (131)
293 cd05706 S1_Rrp5_repeat_sc10 S1 48.3 84 0.0018 24.7 6.8 52 94-152 6-57 (73)
294 PRK00037 hisS histidyl-tRNA sy 47.4 17 0.00037 39.2 3.4 35 422-456 15-49 (412)
295 TIGR00638 Mop molybdenum-pteri 46.8 89 0.0019 24.2 6.7 50 94-152 8-58 (69)
296 cd00770 SerRS_core Seryl-tRNA 46.7 23 0.0005 36.7 4.1 66 423-488 50-119 (297)
297 PF12857 TOBE_3: TOBE-like dom 46.0 1.2E+02 0.0027 23.1 7.1 49 94-152 6-56 (58)
298 PRK06752 single-stranded DNA-b 45.8 31 0.00068 30.2 4.2 38 353-390 61-106 (112)
299 PF15513 DUF4651: Domain of un 45.8 25 0.00055 27.8 3.1 22 426-447 2-23 (62)
300 PRK06253 O-phosphoseryl-tRNA s 45.7 20 0.00044 39.9 3.6 48 281-328 210-260 (529)
301 cd05703 S1_Rrp5_repeat_hs12_sc 45.7 44 0.00096 26.8 4.8 53 94-152 3-56 (73)
302 TIGR00414 serS seryl-tRNA synt 45.2 36 0.00077 37.2 5.4 64 423-488 171-240 (418)
303 PRK12420 histidyl-tRNA synthet 44.6 21 0.00046 38.8 3.6 36 421-456 14-49 (423)
304 PF03590 AsnA: Aspartate-ammon 43.9 2.3E+02 0.005 28.6 10.2 98 215-312 7-122 (244)
305 cd04486 YhcR_OBF_like YhcR_OBF 43.5 1.5E+02 0.0033 24.3 7.7 32 141-173 43-75 (78)
306 PLN02972 Histidyl-tRNA synthet 43.4 22 0.00049 41.6 3.7 35 421-455 337-371 (763)
307 cd04496 SSB_OBF SSB_OBF: A sub 42.7 48 0.001 27.6 4.8 49 118-172 43-99 (100)
308 PF00436 SSB: Single-strand bi 42.3 23 0.0005 29.9 2.8 34 354-387 63-104 (104)
309 PRK06863 single-stranded DNA-b 42.2 31 0.00066 32.9 3.8 39 352-390 65-111 (168)
310 cd05686 S1_pNO40 S1_pNO40: pNO 42.1 59 0.0013 25.9 5.0 53 94-152 6-58 (73)
311 PRK12325 prolyl-tRNA synthetas 42.1 25 0.00053 38.6 3.6 33 424-456 46-78 (439)
312 cd00673 AlaRS_core Alanyl-tRNA 42.1 80 0.0017 31.7 6.8 98 215-328 2-110 (232)
313 PRK09010 single-stranded DNA-b 42.0 1.5E+02 0.0031 28.6 8.4 51 120-176 55-116 (177)
314 PRK14799 thrS threonyl-tRNA sy 41.9 28 0.0006 39.4 4.0 33 424-456 167-199 (545)
315 cd05692 S1_RPS1_repeat_hs4 S1_ 41.8 85 0.0019 23.7 5.8 52 94-152 3-54 (69)
316 PLN02908 threonyl-tRNA synthet 41.7 26 0.00057 40.7 3.9 34 423-456 319-352 (686)
317 PRK05813 single-stranded DNA-b 41.7 2.2E+02 0.0047 28.4 9.8 79 90-176 8-103 (219)
318 cd04454 S1_Rrp4_like S1_Rrp4_l 41.1 87 0.0019 25.4 6.0 52 94-152 9-60 (82)
319 COG3390 Uncharacterized protei 41.0 1.2E+02 0.0026 29.4 7.5 63 91-157 46-110 (196)
320 PF04057 Rep-A_N: Replication 40.8 1.9E+02 0.0041 25.0 8.3 62 108-174 38-100 (101)
321 PRK00036 primosomal replicatio 40.8 62 0.0013 28.5 5.1 51 119-176 47-99 (107)
322 cd04461 S1_Rrp5_repeat_hs8_sc7 40.8 51 0.0011 26.9 4.5 52 94-152 17-68 (83)
323 PRK00413 thrS threonyl-tRNA sy 40.7 31 0.00066 39.6 4.3 33 424-456 269-301 (638)
324 COG0124 HisS Histidyl-tRNA syn 40.7 27 0.00058 38.3 3.6 35 422-456 15-49 (429)
325 KOG2298|consensus 40.5 5.7 0.00012 43.3 -1.5 61 249-309 170-242 (599)
326 PLN02530 histidine-tRNA ligase 40.4 27 0.00059 38.8 3.7 35 422-456 81-115 (487)
327 COG1098 VacB Predicted RNA bin 40.1 78 0.0017 28.7 5.7 66 94-169 8-75 (129)
328 PRK08486 single-stranded DNA-b 39.6 31 0.00067 33.3 3.4 38 353-390 63-108 (182)
329 PRK08059 general stress protei 39.6 99 0.0021 27.6 6.5 67 94-169 10-78 (123)
330 PRK12305 thrS threonyl-tRNA sy 38.8 32 0.0007 39.0 4.0 34 423-456 204-237 (575)
331 PRK06341 single-stranded DNA-b 38.7 2.8E+02 0.006 26.4 9.6 80 92-176 7-117 (166)
332 cd05687 S1_RPS1_repeat_ec1_hs1 38.4 59 0.0013 25.4 4.4 52 94-152 3-54 (70)
333 PRK13159 cytochrome c-type bio 38.2 2.7E+02 0.0058 26.2 9.2 73 89-179 50-126 (155)
334 PRK06958 single-stranded DNA-b 37.9 37 0.0008 32.8 3.7 39 352-390 65-111 (182)
335 cd05705 S1_Rrp5_repeat_hs14 S1 37.5 92 0.002 25.1 5.5 53 94-152 6-60 (74)
336 PRK12295 hisZ ATP phosphoribos 37.5 31 0.00067 37.0 3.4 28 429-456 8-35 (373)
337 cd04496 SSB_OBF SSB_OBF: A sub 37.2 42 0.00091 28.0 3.6 34 353-386 58-99 (100)
338 cd00496 PheRS_alpha_core Pheny 36.9 32 0.00068 33.9 3.2 26 430-455 5-30 (218)
339 PRK09194 prolyl-tRNA synthetas 36.8 37 0.00079 38.6 4.0 33 424-456 46-78 (565)
340 PRK05807 hypothetical protein; 36.4 1.4E+02 0.0031 27.2 7.1 67 94-170 8-75 (136)
341 PRK06751 single-stranded DNA-b 36.2 41 0.00089 32.2 3.7 39 351-389 59-105 (173)
342 PLN02678 seryl-tRNA synthetase 36.1 37 0.0008 37.4 3.8 34 423-456 172-205 (448)
343 PRK07772 single-stranded DNA-b 35.9 2.7E+02 0.006 26.9 9.3 75 90-170 4-106 (186)
344 PRK05431 seryl-tRNA synthetase 35.7 62 0.0013 35.4 5.4 64 423-488 168-238 (425)
345 TIGR00418 thrS threonyl-tRNA s 33.9 39 0.00085 38.1 3.7 33 424-456 199-231 (563)
346 cd05690 S1_RPS1_repeat_ec5 S1_ 33.8 60 0.0013 25.1 3.8 53 94-152 3-55 (69)
347 PRK07459 single-stranded DNA-b 33.6 70 0.0015 28.6 4.5 39 352-390 57-104 (121)
348 TIGR00409 proS_fam_II prolyl-t 33.2 43 0.00094 38.1 3.9 33 424-456 46-78 (568)
349 PRK03987 translation initiatio 32.1 1.2E+02 0.0026 31.0 6.4 54 94-152 11-64 (262)
350 cd04485 DnaE_OBF DnaE_OBF: A s 32.0 54 0.0012 25.8 3.3 38 350-388 41-78 (84)
351 PRK07275 single-stranded DNA-b 31.9 55 0.0012 31.0 3.7 38 353-390 61-106 (162)
352 cd00164 S1_like S1_like: Ribos 31.7 65 0.0014 23.8 3.6 51 95-152 1-51 (65)
353 cd04480 RPA1_DBD_A_like RPA1_D 31.7 2.1E+02 0.0044 23.5 6.8 47 112-164 23-70 (86)
354 cd05702 S1_Rrp5_repeat_hs11_sc 31.6 1.1E+02 0.0023 24.0 4.9 53 94-152 3-56 (70)
355 COG0441 ThrS Threonyl-tRNA syn 31.0 40 0.00087 38.4 3.1 60 425-488 220-281 (589)
356 KOG1894|consensus 30.9 78 0.0017 33.3 4.8 84 210-296 102-203 (412)
357 PRK08763 single-stranded DNA-b 30.3 62 0.0013 30.7 3.8 38 353-390 66-111 (164)
358 COG0587 DnaE DNA polymerase II 29.8 1.6E+02 0.0035 36.3 8.0 64 92-161 978-1046(1139)
359 PRK08661 prolyl-tRNA synthetas 29.7 50 0.0011 36.6 3.6 60 424-483 43-114 (477)
360 PRK02801 primosomal replicatio 29.6 93 0.002 26.9 4.5 38 350-387 59-100 (101)
361 PRK05733 single-stranded DNA-b 29.5 3E+02 0.0065 26.3 8.3 78 92-175 7-113 (172)
362 PF13567 DUF4131: Domain of un 29.0 2.7E+02 0.0059 24.8 7.9 57 90-156 75-142 (176)
363 cd05693 S1_Rrp5_repeat_hs1_sc1 29.0 1.6E+02 0.0034 25.3 5.8 51 94-152 6-76 (100)
364 COG2176 PolC DNA polymerase II 28.8 1.4E+02 0.0031 36.7 7.0 77 92-174 241-324 (1444)
365 PRK07274 single-stranded DNA-b 28.7 74 0.0016 28.8 3.9 37 353-389 61-104 (131)
366 PRK06293 single-stranded DNA-b 28.4 73 0.0016 30.2 3.9 38 353-390 57-102 (161)
367 cd05689 S1_RPS1_repeat_ec4 S1_ 27.6 97 0.0021 24.2 4.0 52 94-152 6-58 (72)
368 PF15513 DUF4651: Domain of un 27.5 71 0.0015 25.3 3.0 22 212-233 2-23 (62)
369 PF00970 FAD_binding_6: Oxidor 27.2 80 0.0017 26.3 3.7 64 89-156 32-95 (99)
370 COG0423 GRS1 Glycyl-tRNA synth 27.2 50 0.0011 36.9 2.9 31 426-456 41-73 (558)
371 PRK08182 single-stranded DNA-b 27.1 1.8E+02 0.0038 27.1 6.2 50 120-175 55-112 (148)
372 PRK12444 threonyl-tRNA synthet 27.1 60 0.0013 37.4 3.7 32 425-456 274-305 (639)
373 PRK09521 exosome complex RNA-b 27.0 1.9E+02 0.0041 27.7 6.7 55 94-152 67-128 (189)
374 TIGR00408 proS_fam_I prolyl-tR 26.7 61 0.0013 35.9 3.6 61 425-485 38-110 (472)
375 PLN02837 threonine-tRNA ligase 26.5 63 0.0014 37.1 3.7 34 423-456 245-278 (614)
376 PRK06763 F0F1 ATP synthase sub 26.4 1.2E+02 0.0025 29.8 4.8 50 93-157 40-89 (213)
377 COG2965 PriB Primosomal replic 26.3 1.7E+02 0.0037 25.4 5.3 53 120-172 45-101 (103)
378 PRK08182 single-stranded DNA-b 26.0 86 0.0019 29.1 3.9 38 353-390 68-113 (148)
379 cd04489 ExoVII_LU_OBF ExoVII_L 25.9 93 0.002 24.7 3.7 48 332-385 27-75 (78)
380 KOG3416|consensus 25.6 3.5E+02 0.0075 24.7 7.3 51 93-154 23-73 (134)
381 cd05684 S1_DHX8_helicase S1_DH 25.6 2.4E+02 0.0052 22.5 6.1 55 94-152 3-58 (79)
382 PF11736 DUF3299: Protein of u 24.9 5.6E+02 0.012 23.8 9.4 61 87-158 52-124 (146)
383 cd05688 S1_RPS1_repeat_ec3 S1_ 24.8 1.3E+02 0.0028 22.8 4.3 51 94-152 4-54 (68)
384 cd00645 AsnA Asparagine synthe 24.7 2.3E+02 0.005 29.6 6.9 95 218-312 4-115 (309)
385 TIGR00468 pheS phenylalanyl-tR 24.4 75 0.0016 32.9 3.5 26 430-455 76-101 (294)
386 COG3689 Predicted membrane pro 24.3 4.3E+02 0.0093 27.1 8.6 91 86-180 171-266 (271)
387 TIGR00621 ssb single stranded 24.1 93 0.002 29.3 3.8 38 352-389 64-109 (164)
388 PLN02320 seryl-tRNA synthetase 23.8 72 0.0016 35.7 3.4 46 410-460 223-270 (502)
389 PRK06386 replication factor A; 23.8 4.7E+02 0.01 28.1 9.4 69 91-170 13-88 (358)
390 cd04492 YhaM_OBF_like YhaM_OBF 22.8 1.3E+02 0.0027 23.9 3.9 35 354-389 44-78 (83)
391 TIGR00389 glyS_dimeric glycyl- 22.7 79 0.0017 35.8 3.5 32 425-456 37-69 (551)
392 KOG2783|consensus 22.6 1.2E+02 0.0026 32.7 4.5 57 256-312 128-184 (436)
393 PRK04172 pheS phenylalanyl-tRN 22.5 87 0.0019 34.9 3.8 30 426-455 233-262 (489)
394 PRK03991 threonyl-tRNA synthet 22.3 99 0.0021 35.6 4.2 59 423-485 225-293 (613)
395 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 22.1 2.6E+02 0.0057 22.6 5.8 53 94-152 9-64 (86)
396 PTZ00248 eukaryotic translatio 21.3 1.9E+02 0.004 30.6 5.6 54 94-152 20-73 (319)
397 PRK13732 single-stranded DNA-b 21.2 1.1E+02 0.0023 29.4 3.6 40 352-391 67-116 (175)
398 PLN02734 glycyl-tRNA synthetas 20.3 84 0.0018 36.5 3.1 31 426-456 110-141 (684)
399 PTZ00213 asparagine synthetase 20.1 5E+02 0.011 27.6 8.3 101 212-312 9-126 (348)
No 1
>KOG1885|consensus
Probab=100.00 E-value=8.3e-86 Score=676.92 Aligned_cols=359 Identities=64% Similarity=1.116 Sum_probs=337.8
Q ss_pred ccccCChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCCceEEEE
Q psy11418 34 YTQQCLTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYD 113 (553)
Q Consensus 34 ~~~~~~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~ 113 (553)
.+++.|++++++.|.+.+++|+..|.+|||++|.+++|+.+|.++|.++..+++..+..|+|+|||+++|.+|+||+|+|
T Consensus 48 ~e~~~d~~qy~~~R~r~i~~l~~s~~~Pyphkf~vs~si~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGsKL~Fyd 127 (560)
T KOG1885|consen 48 SEETSDPEQYFKIRSRAIEELRASGLNPYPHKFHVSISIPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGSKLVFYD 127 (560)
T ss_pred ccccCCHHHHHHHHHHHHHHHhhcCCCCCcchhhccccHHHHHHHhcCcccccccccceeeeeeeEeeeeccCCceEEEE
Confidence 45566999999999999999999999999999999999999999999988888888889999999999999999999999
Q ss_pred EEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchh
Q psy11418 114 LRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETR 193 (553)
Q Consensus 114 l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r 193 (553)
|++++.+||||++.+...+++.|....+.|++||+|+|.|.+++|++||+||.+.++.+|+||++++|..++||+|.|+|
T Consensus 128 l~~~g~klQvm~~~~~~~~~~~F~~~~~~lkrGDiig~~G~pgrt~~gELSi~~~~~~lLspcLh~lP~~~~gLkD~EtR 207 (560)
T KOG1885|consen 128 LHGDGVKLQVMANAKKITSEEDFEQLHKFLKRGDIIGVSGYPGRTKSGELSIIPNEIILLSPCLHMLPHEHFGLKDKETR 207 (560)
T ss_pred EecCCeEEEEEEehhhcCCHHHHHHHHhhhhccCEEeeecCCCcCCCceEEEeecchheecchhccCChhhcCCCcHHHH
Confidence 99999999999999886678889999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHH
Q psy11418 194 FRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKM 273 (553)
Q Consensus 194 ~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~ 273 (553)
||+|||||+.|+.++.+|++|++|+..||.||+++||+||+||||+..+|||+|+||+|+||.+++++|||+|||||||+
T Consensus 208 yrqRylDlilN~~~r~~f~~RakII~~iRkfld~rgFlEVETPmmn~iaGGA~AkPFIT~hndldm~LylRiAPEL~lK~ 287 (560)
T KOG1885|consen 208 YRKRYLDLILNPEVRDRFRIRAKIISYIRKFLDSRGFLEVETPMMNMIAGGATAKPFITHHNDLDMDLYLRIAPELYLKM 287 (560)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhcCceEecchhhccccCccccCceeecccccCcceeeeechHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcccccCCCcccccccccccChHHHHHh
Q psy11418 274 LVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDRNRPCVMANARMYQSEEEFASD 353 (553)
Q Consensus 274 l~~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~~~~e~~~~~ 353 (553)
|+|||++||||||+.|||||+|.+||||||.||+||||+||+|+|+++|+|++.+
T Consensus 288 LvVGGldrVYEIGr~FRNEGIDlTHNPEFTTcEfY~AYady~dlm~~TE~l~s~m------------------------- 342 (560)
T KOG1885|consen 288 LVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYEDLMDMTEELLSGM------------------------- 342 (560)
T ss_pred HHhccHHHHHHHHHHhhhcCcccccCCCcchHHHHHHHhhHHHHHHHHHHHHHHH-------------------------
Confidence 9999999999999999999999999999999999999999999999999999988
Q ss_pred hcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCChhhhccccceeeecChHHHHHHHHHHHHHH
Q psy11418 354 LVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIA 433 (553)
Q Consensus 354 ~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~ 433 (553)
T Consensus 343 -------------------------------------------------------------------------------- 342 (560)
T KOG1885|consen 343 -------------------------------------------------------------------------------- 342 (560)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhHHHHHhccCcceEecCCCCCCCCCcccCCCC
Q psy11418 434 YVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKSTHGSYKVTYHPDGPESGSPVEIDFTP 513 (553)
Q Consensus 434 ~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel~~k~l~~~~~~~~~~e~~~~~~~~~~~~~~ 513 (553)
.+.+.|+|++.|+|+..... ...++|.+
T Consensus 343 ---------------------------------------------------v~~i~G~~~i~y~p~~~~~~-~~eldf~~ 370 (560)
T KOG1885|consen 343 ---------------------------------------------------VKNITGSYKITYHPNGPEEP-ELELDFTR 370 (560)
T ss_pred ---------------------------------------------------HHhhcCceeEeecCCCCCCC-ceeeeccC
Confidence 24566778888887655422 56789999
Q ss_pred CceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHhC
Q psy11418 514 PFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSD 549 (553)
Q Consensus 514 ~f~rit~~eA~~~~~g~~~~~~~~~~~~~~~~~~~~ 549 (553)
||+|++|.+.+++.+|++++.++.+++++..+++.+
T Consensus 371 pfrri~mi~~L~k~lgi~l~~~~~l~~~e~~~~L~~ 406 (560)
T KOG1885|consen 371 PFRRIEMIEELEKELGIKLPPGSTLHTEETRELLKS 406 (560)
T ss_pred CeeeeeHHHHHHHHhCCCCCCccccCchhhHHHHHH
Confidence 999999999999999999998777888877666543
No 2
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.5e-81 Score=654.30 Aligned_cols=289 Identities=52% Similarity=0.836 Sum_probs=274.9
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCccccc-CCcEEEEEEEEEeeecCCCceEEEEEEe
Q psy11418 38 CLTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVL-ENVTLSVAGRVHAIRESGTKLMFYDLRG 116 (553)
Q Consensus 38 ~~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~v~Gri~~~R~~g~kl~Fi~l~d 116 (553)
...+++.+.|++|+++|+++|++|||+.|.+++++.+++++|.+....+.. ...+|+|+|||+++|.+| |++|++|.|
T Consensus 8 ~~~~~~~~~R~~kl~~lr~~g~~~yp~~~~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~G-K~~F~~i~d 86 (502)
T COG1190 8 RDLNDQIAVRREKLAALREQGIDPYPNDFERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMG-KASFADLQD 86 (502)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCcCcccccHHHHHHHHhccchhhhhhccceeEEecceeeecccC-ceeEEEEec
Confidence 366788999999999999999999999999999999999999875533322 233599999999999999 999999999
Q ss_pred CCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhcc
Q psy11418 117 EGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQ 196 (553)
Q Consensus 117 ~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~ 196 (553)
++++||++++++.. +++.|..+.+.+++||+|+|+|.+++|++||++|.|+++++|+||++|||++|||++|+|+|||+
T Consensus 87 ~~gkiQ~yi~k~~~-~~~~~~~~~~~~dlGDiigv~G~~~~T~~GelSv~v~~~~lLsKsL~pLPeK~hgL~D~E~RyR~ 165 (502)
T COG1190 87 GSGKIQLYVNKDEV-GEEVFEALFKKLDLGDIIGVEGPLFKTKTGELSVSVEELRLLSKSLRPLPEKFHGLTDKEIRYRQ 165 (502)
T ss_pred CCceEEEEEecccc-chhhHHHHHhccccCCEEeeeeeeeecCCCceEEEEEEEeeecccCCCCChhhcCCccHHHHHHH
Confidence 99999999999875 56778778899999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHH
Q psy11418 197 RYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVV 276 (553)
Q Consensus 197 R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~ 276 (553)
||+||++|++.+.+|..||+|+++||+||+++||+||+||+|++++|||+|+||.||||+++.++|||||||||||+|+|
T Consensus 166 RylDLi~N~e~r~~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF~ThhNald~dlyLRIApELyLKRliV 245 (502)
T COG1190 166 RYLDLIVNPESRQTFIKRSKIIRAIREFLDDRGFLEVETPMLQPIPGGAAARPFITHHNALDMDLYLRIAPELYLKRLIV 245 (502)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCeEeccccccccCCCcccccceeeecccCCceEEeeccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcc
Q psy11418 277 GGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 277 ~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~ 328 (553)
||++||||||++||||++|++|||||||||+|+||+||+|+|+++|+|++++
T Consensus 246 GG~erVfEIgr~FRNEGid~tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~~ 297 (502)
T COG1190 246 GGFERVFEIGRNFRNEGIDTTHNPEFTMLEFYQAYADYEDLMDLTEELIKEL 297 (502)
T ss_pred cCchhheeeccccccCCCccccCcchhhHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999
No 3
>PLN02502 lysyl-tRNA synthetase
Probab=100.00 E-value=7.7e-76 Score=641.52 Aligned_cols=290 Identities=59% Similarity=0.981 Sum_probs=274.9
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCCceEEEEEEeC
Q psy11418 38 CLTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGE 117 (553)
Q Consensus 38 ~~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~ 117 (553)
.++++++++|++|+++|++.|++|||++|.+++++++++++|.++..++...|++|+|+|||+++|.+| |++|++|+|+
T Consensus 56 ~~~~~~~~~r~~~~~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~G-k~~F~~LrD~ 134 (553)
T PLN02502 56 MDPTQYRANRLKKVEALRAKGVEPYPYKFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFG-KLAFYDLRDD 134 (553)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCC-CeEEEEEecC
Confidence 467889999999999999999999999999999999999999988767667788999999999999999 9999999999
Q ss_pred CEEEEEEEecccCCC-HHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhcc
Q psy11418 118 GLKIQVMANARMYQS-EEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQ 196 (553)
Q Consensus 118 ~~~iQvv~~~~~~~~-~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~ 196 (553)
++.||||++++.... .+.|..+.+.|++||+|+|+|++.+|++|++||.+++|+||++|+.|+|.++++++|.++||++
T Consensus 135 ~g~iQv~~~~~~~~~~~~~~~~~~~~l~~gdiV~V~G~~~~t~~gelel~~~~i~vLs~~l~plP~k~~~~~d~e~r~r~ 214 (553)
T PLN02502 135 GGKIQLYADKKRLDLDEEEFEKLHSLVDRGDIVGVTGTPGKTKKGELSIFPTSFEVLTKCLLMLPDKYHGLTDQETRYRQ 214 (553)
T ss_pred CccEEEEEECccccchhHHHHHHHhCCCCCcEEEEEEEEEecCCCCEEEEEeEEEEEeccCCCCCcccccccchhhhccc
Confidence 999999998765421 1347666667999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHH
Q psy11418 197 RYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVV 276 (553)
Q Consensus 197 R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~ 276 (553)
|||||++|+.++++|++||.|+++||+||.++||+||+||+|++++|||+++||.|++|++++++||++|||||||+|++
T Consensus 215 RyLdl~~n~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~gGA~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v 294 (553)
T PLN02502 215 RYLDLIANPEVRDIFRTRAKIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFVTHHNDLNMDLYLRIATELHLKRLVV 294 (553)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeeccCCCccccceeeecccCCcceeeecCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcc
Q psy11418 277 GGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 277 ~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~ 328 (553)
+|++||||||||||||+++++|||||||||||++|+|++|||+++|+||+++
T Consensus 295 ~g~~rVfeIg~~FRnE~~~~rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~i 346 (553)
T PLN02502 295 GGFERVYEIGRQFRNEGISTRHNPEFTTCEFYQAYADYNDMMELTEEMVSGM 346 (553)
T ss_pred hccCCEEEEcCeeeCCCCCCccccceeehhhhhhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988
No 4
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=100.00 E-value=1.3e-74 Score=628.75 Aligned_cols=289 Identities=50% Similarity=0.842 Sum_probs=269.3
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCcccc-cCCcEEEEEEEEEeeecCCCceEEEEEEeC
Q psy11418 39 LTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQV-LENVTLSVAGRVHAIRESGTKLMFYDLRGE 117 (553)
Q Consensus 39 ~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~ 117 (553)
|.+++.+.|++|+++|++.|++|||++|.+++++++++++|+++..++. ..+++|+|+|||+++|.+| |++|++|+|+
T Consensus 1 ~~~~~~~~r~~k~~~l~~~~~~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~g-k~~F~~l~D~ 79 (496)
T TIGR00499 1 DLNDQLQTRREKLARLRQTGNNPYLNKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMG-KATFITLQDE 79 (496)
T ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCC-CeEEEEEEcC
Confidence 3567899999999999999999999999999999999999987665442 3477899999999999998 9999999999
Q ss_pred CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhccc
Q psy11418 118 GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQR 197 (553)
Q Consensus 118 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R 197 (553)
++.||+|++++.. +++.+....+.|++||+|+|+|++.+|++|++||.+++|++||+|+.|+|.++++++|.++||++|
T Consensus 80 ~g~iQ~~~~~~~~-~~~~~~~~~~~l~~gd~V~v~G~~~~t~~gelel~~~~i~ilsk~~~plP~k~~~~~d~e~r~r~R 158 (496)
T TIGR00499 80 SGQIQLYVNKDDL-PEDFYEFDEYLLDLGDIIGVTGYPFKTKTGELSVHVTELQILTKALRPLPDKFHGLTDQETRYRQR 158 (496)
T ss_pred CccEEEEEECCcC-cHHHHHHHHhcCCCCCEEEEEEEEEECCCCcEEEEeeEEEEEecCCCCCCccccccCChhhhhhhh
Confidence 9999999988754 344343223358999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHc
Q psy11418 198 YLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG 277 (553)
Q Consensus 198 ~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~ 277 (553)
||||++|+.++++|++||.|++++|+||.++||+||+||+|++.+|||+|+||.|++|+++.++|||+|||||||+|++|
T Consensus 159 ~Ldl~~n~~~~~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t~~~~~~~~~yLriSpELylKrlivg 238 (496)
T TIGR00499 159 YLDLIVNPDSRQTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIPGGANARPFITHHNALDMDLYLRIAPELYLKRLIVG 238 (496)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEeecccCCCceEEecCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhccc
Q psy11418 278 GLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 278 g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~ 329 (553)
|++||||||||||||++++||||||||||||++|+||+|||+++|+||++++
T Consensus 239 G~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~ 290 (496)
T TIGR00499 239 GFEKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLA 290 (496)
T ss_pred CCCceEEEecceecCCCCCcccchhheeehhhhcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999883
No 5
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2e-74 Score=627.35 Aligned_cols=287 Identities=45% Similarity=0.770 Sum_probs=269.7
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCcccc-cCCcEEEEEEEEEeeecCCCceEEEEEEeC
Q psy11418 39 LTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQV-LENVTLSVAGRVHAIRESGTKLMFYDLRGE 117 (553)
Q Consensus 39 ~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~ 117 (553)
+.+++.+.|++|+++|++.|+ |||++|.+++++++++++|+++..++. ..+++|+|+|||+++|.+| |++|++|+|+
T Consensus 14 ~~~~~~~~r~~k~~~l~~~g~-py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G-k~~F~~lrD~ 91 (505)
T PRK12445 14 DFNDELRNRREKLAALRQQGV-AFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG-KASFVTLQDV 91 (505)
T ss_pred CccHHHHHHHHHHHHHHHhCC-CCCCCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCC-CcEEEEEEeC
Confidence 467889999999999999999 999999999999999999987654332 3467899999999999999 8999999999
Q ss_pred CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhccc
Q psy11418 118 GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQR 197 (553)
Q Consensus 118 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R 197 (553)
++.||||++++.. +++.|....+.|++||+|+|+|++.+|++|++||.++++++||+|+.|+|.++++++|.++|||+|
T Consensus 92 ~g~iQ~~~~~~~~-~~~~~~~~~~~l~~Gd~V~v~G~~~~t~~gelel~~~~~~llsk~~~plP~~~~~~~d~e~r~r~R 170 (505)
T PRK12445 92 GGRIQLYVARDSL-PEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQR 170 (505)
T ss_pred CccEEEEEECCcc-chhhHHHHHhcCCCCCEEEEEEEEEecCCCcEEEEEeEEEEEecCCCCCCcccccccChhhhhhhh
Confidence 9999999987654 344554456789999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHc
Q psy11418 198 YLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG 277 (553)
Q Consensus 198 ~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~ 277 (553)
||||++|+..+++|++||+|++++|+||.++||+||+||+|++++|||+++||.|++|+++.++||++|||||||+|++|
T Consensus 171 yldl~~n~~~r~~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~~gGa~a~pF~t~~~~~~~~~yL~~SpELylKrlivg 250 (505)
T PRK12445 171 YLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVG 250 (505)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeeEecCCCCcccceecccccCCcceeeecCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcc
Q psy11418 278 GLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 278 g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~ 328 (553)
|++||||||||||||+++++|||||||||||++|+|++|||+++|+||+++
T Consensus 251 G~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~l 301 (505)
T PRK12445 251 GFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTL 301 (505)
T ss_pred cCCcEEEEehhccCCCCCCCcCcccceeeeeeecCCHHHHHHHHHHHHHHH
Confidence 999999999999999998899999999999999999999999999999988
No 6
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=100.00 E-value=3.6e-74 Score=630.30 Aligned_cols=294 Identities=55% Similarity=0.971 Sum_probs=274.7
Q ss_pred ccccCChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCCceEEEE
Q psy11418 34 YTQQCLTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYD 113 (553)
Q Consensus 34 ~~~~~~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~ 113 (553)
.+++.++++++..|++|+++|++.|++|||++|.+++++++++++|+++..++...+..|+|+|||+++|.+|+|++|++
T Consensus 76 ~~~~~~~~~~~~~r~~k~~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~F~~ 155 (585)
T PTZ00417 76 EEAEVDPRLYYENRSKFIQEQKAKGINPYPHKFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLRFFD 155 (585)
T ss_pred ccccCChHHHHHHHHHHHHHHHhcCCCCCCCCCcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCEEEE
Confidence 44555889999999999999999999999999999999999999998776555445567999999999999997799999
Q ss_pred EEeCCEEEEEEEecccCC-CHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcch
Q psy11418 114 LRGEGLKIQVMANARMYQ-SEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKET 192 (553)
Q Consensus 114 l~d~~~~iQvv~~~~~~~-~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~ 192 (553)
|+|+++.||||++++... .++.|....+.|++||+|+|+|.+.+|++||++|.+++|++|++|+.|+|.++ |++|.++
T Consensus 156 L~d~~g~iQv~~~~~~~~~~~~~~~~~~~~l~~Gd~V~V~G~~~~t~~gel~i~~~~i~llsk~l~~lP~~~-g~~d~e~ 234 (585)
T PTZ00417 156 LVGDGAKIQVLANFAFHDHTKSNFAECYDKIRRGDIVGIVGFPGKSKKGELSIFPKETIILSPCLHMLPMKY-GLKDTEI 234 (585)
T ss_pred EEeCCeeEEEEEECCccCCCHHHHHHHHhcCCCCCEEEEEeEEcCCCCceEEEEEEEEEEEecCCCCCCccc-CCCCccc
Confidence 999999999999976431 24566555678999999999999999999999999999999999999999987 8999999
Q ss_pred hhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHH
Q psy11418 193 RFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLK 272 (553)
Q Consensus 193 r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk 272 (553)
||++|||||++|+..+++|++||+|+++||+||+++||+||+||+|++++|||+++||.|++|++++++|||+|||||||
T Consensus 235 r~r~RyLdL~~n~~~~~ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~GGA~a~PF~T~~n~~d~~lYLriSpEL~lK 314 (585)
T PTZ00417 235 RYRQRYLDLMINESTRSTFITRTKIINYLRNFLNDRGFIEVETPTMNLVAGGANARPFITHHNDLDLDLYLRIATELPLK 314 (585)
T ss_pred ccccchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccCCcccceeEEecccCCCcceEEeecHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcc
Q psy11418 273 MLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 273 ~l~~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~ 328 (553)
+|++||++||||||||||||+++++|||||||||||++|+||+|||+++|+||+++
T Consensus 315 rLlvgG~~rVfeIgp~FRnE~~~~rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~~v 370 (585)
T PTZ00417 315 MLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYADFYDLIKWSEDFFSQL 370 (585)
T ss_pred HHHHhCCCCEEEEcccccCCCCCCCccceeeeeeeeeecCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988
No 7
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3e-72 Score=610.13 Aligned_cols=286 Identities=51% Similarity=0.826 Sum_probs=268.2
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCccccc-CCcEEEEEEEEEeeecCCCceEEEEEEeCCE
Q psy11418 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVL-ENVTLSVAGRVHAIRESGTKLMFYDLRGEGL 119 (553)
Q Consensus 41 ~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~ 119 (553)
+++.+.|++|+++|++.|++|||++|.+++++++++++|.++..++.. .+++|+|+|||+++|.+| |++|++|+|+++
T Consensus 4 ~~~~~~r~~k~~~~~~~g~~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g-~~~Fi~lrD~~g 82 (491)
T PRK00484 4 NEQIAVRREKLAELREQGIDPYPNKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMG-KASFATLQDGSG 82 (491)
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCCCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCC-ceEEEEEEcCCc
Confidence 568999999999999999999999999999999999999876554432 246799999999999999 999999999999
Q ss_pred EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhcccch
Q psy11418 120 KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYL 199 (553)
Q Consensus 120 ~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R~l 199 (553)
.||||++++.. +++.| +..+.|+.||+|+|+|++.++++|++||.+++++||++|+.|+|.+++++.+.++|+++|||
T Consensus 83 ~iQ~v~~~~~~-~~~~~-~~~~~l~~g~~v~v~G~v~~t~~ge~el~~~~~~vls~~~~plP~~~~~~~~~~~r~r~R~l 160 (491)
T PRK00484 83 RIQLYVSKDDV-GEEAL-EAFKKLDLGDIIGVEGTLFKTKTGELSVKATELTLLTKSLRPLPDKFHGLTDVETRYRQRYV 160 (491)
T ss_pred cEEEEEECCcC-CHHHH-HHHhcCCCCCEEEEEEEEEEcCCCcEEEEEeEEEEEeccCCCCCcccccccchhhhccceee
Confidence 99999987653 34445 34556999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccC
Q psy11418 200 DLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL 279 (553)
Q Consensus 200 dl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~ 279 (553)
|||+|+.++++|++||+|++++|+||.++||+||+||+|++++|||+|+||.|++++++.++||++|||||||+|+++|+
T Consensus 161 Dl~~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~l~v~g~ 240 (491)
T PRK00484 161 DLIVNPESRETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFITHHNALDIDLYLRIAPELYLKRLIVGGF 240 (491)
T ss_pred ehhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCceeccCCCccceeeeeccccCCCceEeccCHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhccc
Q psy11418 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 280 ~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~ 329 (553)
+|||+||||||||+++++|||||||||||++|+|++|+|+++|++|++++
T Consensus 241 ~rVfei~~~FR~E~~~~rH~pEFt~lE~e~a~~d~~d~m~~~E~li~~i~ 290 (491)
T PRK00484 241 ERVYEIGRNFRNEGIDTRHNPEFTMLEFYQAYADYNDMMDLTEELIRHLA 290 (491)
T ss_pred CcEEEEecceecCCCCCCcCCceEEEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999983
No 8
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.6e-69 Score=626.45 Aligned_cols=280 Identities=43% Similarity=0.707 Sum_probs=265.4
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCCceEEEEEEeCC
Q psy11418 39 LTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEG 118 (553)
Q Consensus 39 ~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~ 118 (553)
..+++.++|++|+++|++.|++|||++|+++++++++.+. ..|++|+|+|||+++|.+| |++|++|+|++
T Consensus 609 ~~~~~~~~r~~k~~~l~~~g~~pyp~~~~~~~~~~~~~~~---------~~~~~V~v~Grv~~~R~~G-~~~F~~lrD~~ 678 (1094)
T PRK02983 609 RLPEQVRVRLAKLEALRAAGVDPYPVGVPPTHTVAEALDA---------PTGEEVSVSGRVLRIRDYG-GVLFADLRDWS 678 (1094)
T ss_pred CccHHHHHHHHHHHHHHHcCCCCCCCCCcCccCHHHHHHh---------cCCCEEEEEEEEEEEeeCC-CeEEEEEEeCC
Confidence 4567899999999999999999999999999999998764 2456799999999999999 99999999999
Q ss_pred EEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhcccc
Q psy11418 119 LKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRY 198 (553)
Q Consensus 119 ~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R~ 198 (553)
+.||+|++++.. +++.|..+.+.|++||+|+|+|++.+|++|++||.+++|+++++|+.|+|.++++++|+++|+|+||
T Consensus 679 g~iQ~v~~~~~~-~~~~~~~~~~~l~~gd~V~v~G~v~~t~~ge~ei~~~~i~ll~k~~~plP~k~~~~~d~e~R~r~R~ 757 (1094)
T PRK02983 679 GELQVLLDASRL-EQGSLADFRAAVDLGDLVEVTGTMGTSRNGTLSLLVTSWRLAGKCLRPLPDKWKGLTDPEARVRQRY 757 (1094)
T ss_pred eeEEEEEECCcc-chhhHHHHHhcCCCCCEEEEEEEEEEcCCCCEEEEEeEEEEEeccCcCCCCccccCCChhhcchhhh
Confidence 999999998764 4455655567799999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHcc
Q psy11418 199 LDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG 278 (553)
Q Consensus 199 ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g 278 (553)
|||++|+.++++|++||+|+++||+||.++||+||+||+|++++||++++||.|++|++|+++|||||||||||+|+++|
T Consensus 758 lDL~~n~~~~~~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~gGa~a~pF~t~~~~~~~~~yLriSPELylKrLivgG 837 (1094)
T PRK02983 758 LDLAVNPEARDLLRARSAVVRAVRETLVARGFLEVETPILQQVHGGANARPFVTHINAYDMDLYLRIAPELYLKRLCVGG 837 (1094)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCEeeccCCCcccceeEeeecCCCccchhhcChHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhccc
Q psy11418 279 LDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 279 ~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~ 329 (553)
++||||||||||||+++++|||||||||+|++|+||+|||+++|+||++++
T Consensus 838 ~erVFEIg~~FRnE~~~~rHnpEFTmLE~y~a~~dy~d~m~l~E~li~~i~ 888 (1094)
T PRK02983 838 VERVFELGRNFRNEGVDATHNPEFTLLEAYQAHADYDTMRDLTRELIQNAA 888 (1094)
T ss_pred cCceEEEcceecCCCCCCCccccccchhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999984
No 9
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=100.00 E-value=9.9e-66 Score=565.07 Aligned_cols=265 Identities=38% Similarity=0.715 Sum_probs=242.7
Q ss_pred CCccccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccC
Q psy11418 64 HKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKI 143 (553)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l 143 (553)
++|.+++++++++++|+++..++...+++|+|+|||+++|.+| |++|++|||++|.||||++++...+++.|....+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~G-k~~F~~LrD~~G~IQvv~~~~~~~~~~~~~~~~~~l 159 (659)
T PTZ00385 81 SSFRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIG-KIIFVTIRSNGNELQVVGQVGEHFTREDLKKLKVSL 159 (659)
T ss_pred ccCcccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccC-CeEEEEEEECCceEEEEEECCccCCHHHHHHHHhCC
Confidence 4789999999999999887655444456799999999999999 899999999999999999987532444565555689
Q ss_pred CCCcEEEEEeecccccCCceeEeeeeEEEeccCC--CCC--CC--CCCCCCCcchhhcccchhhhccHHHHHHHHHHHHH
Q psy11418 144 KRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCL--HML--PH--MHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQI 217 (553)
Q Consensus 144 ~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~--~~l--P~--~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i 217 (553)
++||+|+|+|++.++++||+||.++++++||+++ +++ |. +++++.|.++||++||||||+|+.++++|++||+|
T Consensus 160 ~~gdiV~V~G~v~~t~~GeleI~~~~i~lLska~~~~~~~~p~~~k~~~~~d~e~R~r~RyLDL~~n~~~~~ifr~Rs~I 239 (659)
T PTZ00385 160 RVGDIIGADGVPCRMQRGELSVAASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMTNPCVIETIKKRHVM 239 (659)
T ss_pred CCCCEEEEEEEEEecCCceEEEEeeEEEEechhhhccccCCCCCccccccCChhhhcccceeeeecCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999954 332 33 67899999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCCC
Q psy11418 218 IAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLT 297 (553)
Q Consensus 218 ~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~~ 297 (553)
+++||+||.++||+||+||+|++..||++|+||.|++|+++.++||++|||||||+|+++|++||||||||||||+++++
T Consensus 240 ~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~t~~n~~~~~~yL~~SPELylKrLivgG~erVyeIg~~FRnE~~~~r 319 (659)
T PTZ00385 240 LQALRDYFNERNFVEVETPVLHTVASGANAKSFVTHHNANAMDLFLRVAPELHLKQCIVGGMERIYEIGKVFRNEDADRS 319 (659)
T ss_pred HHHHHHHHHHCCCEEeeCCEeeccCCCCCccceEeecccCCCCEEecCChHHHHHHHhhcccCCEEEEeceecCCCCCCC
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceeeeEeccCCHHHHHHHHHHHHhccc
Q psy11418 298 HNPEFTTCEFYMAYADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 298 H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~ 329 (553)
|||||||||||++|+|++|||+++|++|++++
T Consensus 320 H~pEFTmlE~y~a~~d~~d~m~l~E~li~~~~ 351 (659)
T PTZ00385 320 HNPEFTSCEFYAAYHTYEDLMPMTEDIFRQLA 351 (659)
T ss_pred ccccccceeeeeecCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999883
No 10
>PLN02850 aspartate-tRNA ligase
Probab=100.00 E-value=1.4e-55 Score=481.79 Aligned_cols=243 Identities=25% Similarity=0.374 Sum_probs=213.9
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecc------cccC
Q psy11418 87 VLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPG------KTKK 160 (553)
Q Consensus 87 ~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~------~t~~ 160 (553)
...|++|+|+|||+++|.+| |++|++|||++++||+|+..+.......+.+++..|++||+|.|+|++. ++.+
T Consensus 78 ~~~g~~V~v~Grv~~~R~~g-k~~Fl~Lrd~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t 156 (530)
T PLN02850 78 ELAGSEVLIRGRVHTIRGKG-KSAFLVLRQSGFTVQCVVFVSEVTVSKGMVKYAKQLSRESVVDVEGVVSVPKKPVKGTT 156 (530)
T ss_pred hhCCCEEEEEEEEEEEccCC-CeEEEEEEeCCcCEEEEEECCccccCHHHHHHHhCCCCCCEEEEEEEEEccCcCCCCCC
Confidence 34688999999999999999 7999999999999999998764212345667788999999999999987 3557
Q ss_pred CceeEeeeeEEEeccCCCCCCCCCCC-------------------CCCcchhhcccchhhhccHHHHHHHHHHHHHHHHH
Q psy11418 161 GELSIIPKKLTLLSPCLHMLPHMHFG-------------------VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYV 221 (553)
Q Consensus 161 ge~~l~~~~i~il~~~~~~lP~~~~~-------------------l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~i 221 (553)
+++||++++|.|+|+|+.++|..... ..+.++|+++|||||| ++.++++|++||.|++++
T Consensus 157 ~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR-~~~~qaifrirs~i~~~~ 235 (530)
T PLN02850 157 QQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLR-TPANQAIFRIQSQVCNLF 235 (530)
T ss_pred ccEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhc-CHHHHHHHHHHHHHHHHH
Confidence 89999999999999999899964321 2457899999999998 899999999999999999
Q ss_pred HHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccC
Q psy11418 222 RRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNP 300 (553)
Q Consensus 222 r~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~ 300 (553)
|+||.++||+||+||+|++..+++++.+|.+ +|||.++||++|||||||+++++|++||||||||||||++++ ||+|
T Consensus 236 R~fl~~~gF~EV~TP~L~~~~~egga~~F~v--~yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t~RHl~ 313 (530)
T PLN02850 236 REFLLSKGFVEIHTPKLIAGASEGGSAVFRL--DYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHRHLC 313 (530)
T ss_pred HHHHHHCCcEEEeCCccccCCCccccceeee--ccCCcceecCCCHHHHHHHHHHhcCCceEEEecccccCCCCCCccch
Confidence 9999999999999999975443334679987 478999999999999999999999999999999999999876 8999
Q ss_pred CcceeeeEeccC-CHHHHHHHHHHHHhcccccCC
Q psy11418 301 EFTTCEFYMAYA-DYNDLMHLTEDLISGRKEDRN 333 (553)
Q Consensus 301 EFt~lE~e~a~~-~~~~~m~~~e~li~~~~~~~~ 333 (553)
|||||||||+|. +|+|+|+++|+||+++++++.
T Consensus 314 EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~ 347 (530)
T PLN02850 314 EFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLN 347 (530)
T ss_pred hhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988 699999999999999976553
No 11
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=100.00 E-value=5.9e-55 Score=468.54 Aligned_cols=238 Identities=29% Similarity=0.467 Sum_probs=214.0
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc--CCceeEe
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSII 166 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~--~ge~~l~ 166 (553)
.|++|+|+|||+++|.+| |++|++|+|+++.||++++++.. +++.| +.++.|+.||+|.|+|++.+++ +|++||.
T Consensus 11 ~g~~v~i~G~v~~~R~~g-~~~Fi~lrd~~g~iQ~v~~~~~~-~~~~~-~~~~~l~~~s~v~v~G~v~~~~~~~~~~el~ 87 (428)
T TIGR00458 11 DGQEVTFMGWVHEIRDLG-GLIFVLLRDREGLIQITAPAKKV-SKNLF-KWAKKLNLESVVAVRGIVKIKEKAPGGFEII 87 (428)
T ss_pred CCCEEEEEEEEEEEecCC-CcEEEEEEeCCeeEEEEEECCcC-CHHHH-HHHhCCCCCcEEEEEEEEEecCCCCCcEEEE
Confidence 578899999999999999 79999999999999999987643 34444 5668899999999999998776 5999999
Q ss_pred eeeEEEeccCCCCCCCCCCC--CCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCC
Q psy11418 167 PKKLTLLSPCLHMLPHMHFG--VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGG 244 (553)
Q Consensus 167 ~~~i~il~~~~~~lP~~~~~--l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gg 244 (553)
+++++|||+|..++|.+..+ ..+.++|+++|||||| |+.++++|++||.|++++|+||.++||+||+||+|++++++
T Consensus 88 ~~~i~vl~~~~~~lP~~~~~~~~~~~~~r~~~R~ldlr-~~~~~~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~e 166 (428)
T TIGR00458 88 PTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLR-RPTVQAIFRIRSGVLESVREFLAEEGFIEVHTPKLVASATE 166 (428)
T ss_pred EeEEEEEecCCCCCCCCccccCCCCHHHHhhhhhhhhC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCCC
Confidence 99999999999889976433 3467899999999996 99999999999999999999999999999999999866655
Q ss_pred CCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCCHHHHHHHHHH
Q psy11418 245 ATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYADYNDLMHLTED 323 (553)
Q Consensus 245 a~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~~~~~m~~~e~ 323 (553)
+++++|.+ ++|+.++||++|||||||+++++|++|||+||||||||++++ ||||||||||||++|+|++|+|+++|+
T Consensus 167 g~~~~f~v--~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~dlm~~~e~ 244 (428)
T TIGR00458 167 GGTELFPI--TYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEE 244 (428)
T ss_pred CCcceeee--EecCCcEEECcCHHHHHHHHHhcccCcEEEEecccccCCCCCccchheeeEeeeeeccCCHHHHHHHHHH
Confidence 55677865 478999999999999999999999999999999999999997 899999999999999999999999999
Q ss_pred HHhcccccC
Q psy11418 324 LISGRKEDR 332 (553)
Q Consensus 324 li~~~~~~~ 332 (553)
+|+++++.+
T Consensus 245 li~~i~~~~ 253 (428)
T TIGR00458 245 LVVRVFEDV 253 (428)
T ss_pred HHHHHHHHH
Confidence 999996544
No 12
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.1e-54 Score=468.05 Aligned_cols=235 Identities=32% Similarity=0.556 Sum_probs=211.0
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC--CceeEe
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK--GELSII 166 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~--ge~~l~ 166 (553)
.|++|+|+|||+++|.+| |++|++|+|+++.||+|++++.. + .+.+.++.|++||+|.|+|++.++++ |++||.
T Consensus 15 ~g~~V~i~GrV~~~R~~g-k~~Fl~LrD~~g~iQ~v~~~~~~--~-~~~~~~~~L~~gs~V~v~G~v~~~~~~~~~~el~ 90 (437)
T PRK05159 15 DGEEVTLAGWVHEIRDLG-GIAFLILRDRSGIIQVVVKKKVD--E-ELFETIKKLKRESVVSVTGTVKANPKAPGGVEVI 90 (437)
T ss_pred CCCEEEEEEEeEeeecCC-CeEEEEEEcCCcEEEEEEeCCcc--H-HHHHHHhCCCCCcEEEEEEEEEcCCCCCCCEEEE
Confidence 578899999999999999 89999999999999999987643 2 33456788999999999999998875 899999
Q ss_pred eeeEEEeccCCCCCCCCCCC--CCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccc--c
Q psy11418 167 PKKLTLLSPCLHMLPHMHFG--VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI--A 242 (553)
Q Consensus 167 ~~~i~il~~~~~~lP~~~~~--l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~--~ 242 (553)
+++|+|||+|..++|....+ ..+.++|+++|||||| |+.++++|++||.|++++|+||.++||+||+||+|+++ +
T Consensus 91 ~~~i~vls~a~~~~P~~~~~~~~~~~~~~~~~r~Ldlr-~~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~e 169 (437)
T PRK05159 91 PEEIEVLNKAEEPLPLDISGKVLAELDTRLDNRFLDLR-RPRVRAIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGTE 169 (437)
T ss_pred EeEEEEEeCCCCCCCCCccccccCCHHHHhhCcceecC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCcccccCCC
Confidence 99999999999889965432 4578999999999995 99999999999999999999999999999999999744 5
Q ss_pred CCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCC-HHHHHHH
Q psy11418 243 GGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYAD-YNDLMHL 320 (553)
Q Consensus 243 gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~-~~~~m~~ 320 (553)
||+ +.|.+ ++||.++||++|||||||+++++|++|||+||||||||++++ ||||||||||||++|+| ++|+|++
T Consensus 170 g~~--~~f~~--~~~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~lm~~ 245 (437)
T PRK05159 170 GGA--ELFPI--DYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDVMDL 245 (437)
T ss_pred CCc--ceEeE--EecCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCCCCcccchhhheeeeeeeecccHHHHHHH
Confidence 554 45654 579999999999999999999999999999999999999997 89999999999999998 9999999
Q ss_pred HHHHHhcccccC
Q psy11418 321 TEDLISGRKEDR 332 (553)
Q Consensus 321 ~e~li~~~~~~~ 332 (553)
+|++|+++++.+
T Consensus 246 ~e~lv~~i~~~~ 257 (437)
T PRK05159 246 LENLLRYMYEDV 257 (437)
T ss_pred HHHHHHHHHHHH
Confidence 999999986543
No 13
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.9e-55 Score=476.99 Aligned_cols=241 Identities=25% Similarity=0.384 Sum_probs=212.7
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc-------ccCC
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK-------TKKG 161 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~-------t~~g 161 (553)
.|++|+|+|||+++|.+| |++|++|||+++.||+|++.+.. ..+.+.+++..|+.||+|.|+|+|.+ +.+|
T Consensus 77 ~g~~V~v~Grv~~~R~~G-k~~Fl~LRd~~~~iQ~v~~~~~~-~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~~~~ 154 (550)
T PTZ00401 77 VDKTVLIRARVSTTRKKG-KMAFMVLRDGSDSVQAMAAVEGD-VPKEMIDFIGQIPTESIVDVEATVCKVEQPITSTSHS 154 (550)
T ss_pred CCCEEEEEEEEEEEecCC-CeEEEEEEeCCcCEEEEEECCCc-cCHHHHHHHhcCCCCCEEEEEEEEEecCccCCCCCCc
Confidence 678999999999999999 89999999999999999975432 23455677889999999999998875 4578
Q ss_pred ceeEeeeeEEEeccCCCCCCCCCCC---------C-CCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeE
Q psy11418 162 ELSIIPKKLTLLSPCLHMLPHMHFG---------V-KDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFL 231 (553)
Q Consensus 162 e~~l~~~~i~il~~~~~~lP~~~~~---------l-~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~ 231 (553)
++||++++|.|||+|+.++|..... + .+.++|+++|||||| ++.++++|++||.|++++|+||.++||+
T Consensus 155 ~~El~v~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~dtrl~~R~LdlR-~~~~~~i~r~rs~i~~~~R~fl~~~gFi 233 (550)
T PTZ00401 155 DIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLR-TPASGAIFRLQSRVCQYFRQFLIDSDFC 233 (550)
T ss_pred cEEEEeeEEEEEeCCCCCCCCCcccccccccccccccChhhhhhhhhhhhc-CHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 9999999999999999889964321 1 257899999999997 8999999999999999999999999999
Q ss_pred EEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEec
Q psy11418 232 EVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMA 310 (553)
Q Consensus 232 EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a 310 (553)
||+||+|+..++++++++|.+ +|||.++||++|||||+|+++++|++|||+||||||||+++| ||+||||||||||+
T Consensus 234 EV~TP~L~~~~~egga~~F~v--~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRaE~s~T~RHl~EFt~Le~E~~ 311 (550)
T PTZ00401 234 EIHSPKIINAPSEGGANVFKL--EYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMR 311 (550)
T ss_pred EEeCCccccCCCCcccccccc--ccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCCCccchhhhhhhhH
Confidence 999999976544445678975 689999999999999999999999999999999999999997 89999999999999
Q ss_pred cC-CHHHHHHHHHHHHhcccccCCC
Q psy11418 311 YA-DYNDLMHLTEDLISGRKEDRNR 334 (553)
Q Consensus 311 ~~-~~~~~m~~~e~li~~~~~~~~~ 334 (553)
|. +|+|+|+++|+||.++++++..
T Consensus 312 ~~~~y~evm~~~e~l~~~i~~~l~~ 336 (550)
T PTZ00401 312 INEHYYEVLDLAESLFNYIFERLAT 336 (550)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHc
Confidence 85 7999999999999999765543
No 14
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=100.00 E-value=7e-54 Score=470.15 Aligned_cols=237 Identities=29% Similarity=0.518 Sum_probs=209.8
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc---------cc
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK---------TK 159 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~---------t~ 159 (553)
.|++|+|+|||+++|.+| |++|++|||++|.+|||++++ ++.+ +.++.|+.||+|.|+|++.+ ++
T Consensus 14 ~g~~V~l~GwV~~~R~~G-kl~Fi~LrD~sg~iQvv~~~~----~~~~-~~~~~L~~esvV~V~G~v~~r~~~~~n~~~~ 87 (583)
T TIGR00459 14 LGQTVTLAGWVNRRRDLG-GLIFIDLRDRSGIVQVVCDPD----ADAL-KLAKGLRNEDVVQVKGKVSARPEGNINRNLD 87 (583)
T ss_pred CCCEEEEEEEEEEEEcCC-CcEEEEEEeCCccEEEEEeCC----HHHH-HHHhcCCCCCEEEEEEEEEeCCccccCccCC
Confidence 577899999999999999 899999999999999999865 2334 45678999999999999975 45
Q ss_pred CCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceec
Q psy11418 160 KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMN 239 (553)
Q Consensus 160 ~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~ 239 (553)
+|++||.++++++|++|..++|..+.+..+.++|+++|||||| |+.++++|++||+|++++|+||.++||+||+||+|+
T Consensus 88 tg~iEl~~~~i~iL~~a~~~P~~~~~~~~~~~~Rl~~RyLDLR-~~~~~~~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~ 166 (583)
T TIGR00459 88 TGEIEILAESITLLNKSKTPPLIIEKTDAEEEVRLKYRYLDLR-RPEMQQRLKLRHKVTKAVRNFLDQQGFLEIETPMLT 166 (583)
T ss_pred CCcEEEEEeEEEEeecCCCCCCcccccccchhhhcccceEEcC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeec
Confidence 8999999999999999975433333455678999999999995 899999999999999999999999999999999998
Q ss_pred c-ccCCCCCcceeeccCCCCccee-eeeCHHHHHHHHHHccCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHH
Q psy11418 240 M-IAGGATAKPFVTHHNDLNMDLY-MRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDL 317 (553)
Q Consensus 240 ~-~~gga~a~~F~t~~~~~~~~~~-L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~ 317 (553)
. .++| |++|.++++.++.++| |+||||||+|+|+++|++|||+||||||||+++++|+|||||||+|++|+|++|+
T Consensus 167 ~s~~eG--ar~f~vp~~~~~~~~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~E~~~t~r~pEFT~le~E~af~d~~dv 244 (583)
T TIGR00459 167 KSTPEG--ARDYLVPSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQPEFTQIDMEMSFMTQEDV 244 (583)
T ss_pred cCCCCC--CcceeeeeecCCCceeecCCCHHHHHHHHHhcccCcEEEEcceeeCCCCCCCCCcccCcceeeecCCCHHHH
Confidence 5 4444 3679887776676666 9999999999999999999999999999999999877999999999999999999
Q ss_pred HHHHHHHHhcccccCCC
Q psy11418 318 MHLTEDLISGRKEDRNR 334 (553)
Q Consensus 318 m~~~e~li~~~~~~~~~ 334 (553)
|+++|+||+++++.+..
T Consensus 245 m~~~E~li~~v~~~v~~ 261 (583)
T TIGR00459 245 MELIEKLVSHVFLEVKG 261 (583)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999876544
No 15
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-53 Score=443.39 Aligned_cols=232 Identities=29% Similarity=0.410 Sum_probs=210.6
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc--CCceeEeee
Q psy11418 91 VTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSIIPK 168 (553)
Q Consensus 91 ~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~--~ge~~l~~~ 168 (553)
++|+|+|||+++|.+| +++|+.|||+++.||||+.++.. .++.| + ++.|..||+|.|+|++.+++ .|.+||+++
T Consensus 17 ~~V~v~GWV~~~R~~g-~i~Fi~lrDgsg~iQ~v~~~~~~-~~~~~-~-~~~L~~es~v~V~G~v~~~~~a~~g~El~v~ 92 (435)
T COG0017 17 QEVTVRGWVHNKRDLG-KIIFLVLRDGSGFIQAVVPKNKV-YEELF-K-AKKLTLESSVVVTGIVKASPKAPQGFELQVE 92 (435)
T ss_pred cEEEEEEEeeeecccC-CeEEEEEEcCCcEEEEEEECCCC-cHHHh-h-hhcCCCccEEEEEEEEEcCCCCCCCEEEEEE
Confidence 7899999999999999 89999999999999999997543 34555 3 78999999999999999875 688999999
Q ss_pred eEEEeccCCCCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCc
Q psy11418 169 KLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAK 248 (553)
Q Consensus 169 ~i~il~~~~~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~ 248 (553)
+++|++.+..++|.+..+-++.|+++++||||+| ++...++|++||.|++++|+||.++||+||+||+|++++.+++++
T Consensus 93 ~i~Vl~~a~~~~Pi~~~~~~~~e~lld~rhL~lR-~~~~~Av~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~EGg~e 171 (435)
T COG0017 93 KIEVLGEADPPYPIDKKEHSELETLLDNRHLDLR-TPKIQAVFKIRSSILRAIREFFYENGFTEVHTPIITASATEGGGE 171 (435)
T ss_pred EEEEeeccCCCCCcCcccccCHHHHHhchheecc-ccchHHHHhHHHHHHHHHHHHHHhCCcEEecCceEeccCCCCCce
Confidence 9999999966788765544468999999999997 899999999999999999999999999999999998766555578
Q ss_pred ceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCCHHHHHHHHHHHHhc
Q psy11418 249 PFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYADYNDLMHLTEDLISG 327 (553)
Q Consensus 249 ~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~ 327 (553)
+|.+ +||+.++||+||||||+|.++++ ++|||+|||+||+|+++| |||.||||+|+||+|++++|+|+++|+||++
T Consensus 172 lF~v--~yf~~~a~LtqS~QLyke~~~~a-l~rVf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~~~d~m~l~E~~i~~ 248 (435)
T COG0017 172 LFKV--DYFDKEAYLTQSPQLYKEALAAA-LERVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLNDVMDLAEELIKY 248 (435)
T ss_pred eEEE--eecCcceEEecCHHHHHHHHHHH-hCceEEecCceecCCCCCcchhhhHheecceeccCcHHHHHHHHHHHHHH
Confidence 9986 69999999999999999998765 999999999999999998 7999999999999999999999999999999
Q ss_pred ccc
Q psy11418 328 RKE 330 (553)
Q Consensus 328 ~~~ 330 (553)
+++
T Consensus 249 i~~ 251 (435)
T COG0017 249 LFK 251 (435)
T ss_pred HHH
Confidence 943
No 16
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=100.00 E-value=7.1e-53 Score=455.06 Aligned_cols=238 Identities=22% Similarity=0.306 Sum_probs=210.8
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc--CCceeE
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSI 165 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~--~ge~~l 165 (553)
..|++|+|+|||+++|.+| |++|++|+|+++.+|+++..+. +...| +.++.|++||+|.|+|++.+++ +|++||
T Consensus 14 ~~~~~V~i~G~v~~~R~~g-~~~Fi~lrD~~g~iq~~~~~~~--~~~~~-~~~~~l~~~s~v~v~G~v~~~~~~~~~~el 89 (450)
T PRK03932 14 YVGQEVTVRGWVRTKRDSG-KIAFLQLRDGSCFKQLQVVKDN--GEEYF-EEIKKLTTGSSVIVTGTVVESPRAGQGYEL 89 (450)
T ss_pred cCCCEEEEEEEEEEEEeCC-CeEEEEEECCCCcEEEEEEcCC--ChHHH-HHHhcCCCCcEEEEEEEEEcCCCCCCCEEE
Confidence 3578999999999999998 9999999999999999997654 34444 4567899999999999999875 579999
Q ss_pred eeeeEEEeccCCCCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCC
Q psy11418 166 IPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGA 245 (553)
Q Consensus 166 ~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga 245 (553)
.+++++||++|..++|..... ...+.++++||||+| ++.++++|++||.|++++|+||.++||+||+||+|+++.+++
T Consensus 90 ~~~~i~vl~~~~~~~p~~~~~-~~~~~~~~~r~l~lR-~~~~~~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg 167 (450)
T PRK03932 90 QATKIEVIGEDPEDYPIQKKR-HSIEFLREIAHLRPR-TNKFGAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDCEG 167 (450)
T ss_pred EEEEEEEccCCCCCCCCCccc-cChHHHhhCceeecc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCceeccCCCC
Confidence 999999999986656643211 245789999999997 689999999999999999999999999999999999777777
Q ss_pred CCcceeecc-------CCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCCHHHH
Q psy11418 246 TAKPFVTHH-------NDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYADYNDL 317 (553)
Q Consensus 246 ~a~~F~t~~-------~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~~~~~ 317 (553)
+++||.+++ ++||.++||++|||+|||++ ++|++|||+||||||||++++ ||||||||||||++|+|++|+
T Consensus 168 ~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l-~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~~~~~~~ 246 (450)
T PRK03932 168 AGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAY-AMALGKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAFADLEDN 246 (450)
T ss_pred CCCceEeecccccccccccCCCcccccCHHHHHHHH-HhccCCeEEeeeccccCCCCCccccccccccceEEeccCHHHH
Confidence 789999865 79999999999999999975 589999999999999999975 899999999999999999999
Q ss_pred HHHHHHHHhcccccC
Q psy11418 318 MHLTEDLISGRKEDR 332 (553)
Q Consensus 318 m~~~e~li~~~~~~~ 332 (553)
|+++|++|+++++.+
T Consensus 247 m~~~e~li~~~~~~~ 261 (450)
T PRK03932 247 MDLAEEMLKYVVKYV 261 (450)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999996544
No 17
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=100.00 E-value=3.7e-52 Score=449.13 Aligned_cols=238 Identities=24% Similarity=0.316 Sum_probs=210.9
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCC--EEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc--cCCce
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEG--LKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT--KKGEL 163 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~--~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t--~~ge~ 163 (553)
..|++|+|+|||+++|.+| |++|++|+|++ +.||+|++++. +. .+...++.|+.||+|.|+|++.++ ++|++
T Consensus 14 ~~g~~v~v~Gwv~~~R~~~-~~~F~~lrD~~~~g~iQ~v~~~~~--~~-~~~~~~~~l~~gs~V~v~G~v~~~~~~~~~~ 89 (453)
T TIGR00457 14 FVGDEVTVSGWVRTKRSSK-KIIFLELNDGSSLGPIQAVINGED--NP-YLFQLLKSLTTGSSVSVTGKVVESPGKGQPV 89 (453)
T ss_pred cCCCEEEEEEEeEEEEcCC-CeEEEEEECCCCCccEEEEEeCCc--Ch-HHHHHHHcCCCCcEEEEEEEEEcCCCCCCCE
Confidence 3578899999999999888 99999999999 99999998762 23 334567889999999999999876 57899
Q ss_pred eEeeeeEEEeccCC-CCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceecccc
Q psy11418 164 SIIPKKLTLLSPCL-HMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 242 (553)
Q Consensus 164 ~l~~~~i~il~~~~-~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~ 242 (553)
||.+++++||++|. .++|.+... ...++++++||||+| ++.++++|++||.|++++|+||.++||+||+||+|+.+.
T Consensus 90 El~~~~i~vl~~~~~~~~P~~~~~-~~~~~~~~~r~l~lR-~~~~~~~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~ 167 (453)
T TIGR00457 90 ELQVKKIEVVGEAEPDDYPLQKKE-HSLEFLRDIAHLRLR-TNTLGAVMRVRNALSQAIHRYFQENGFTWVSPPILTSND 167 (453)
T ss_pred EEEEeEEEEEecCCccCCCCCccc-cChhhHhhCcceecC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCeEeecC
Confidence 99999999999997 456644222 345778899999997 788999999999999999999999999999999999777
Q ss_pred CCCCCcceeecc-------CCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCCH
Q psy11418 243 GGATAKPFVTHH-------NDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYADY 314 (553)
Q Consensus 243 gga~a~~F~t~~-------~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~~ 314 (553)
+++++++|.+.. ++||.++||++|||||||++ ++|++|||+||||||||++++ ||||||||||||++|+|+
T Consensus 168 ~eg~~~~F~v~~~~~~~~~~~~~~~~yL~~Spql~lq~l-~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~~~~ 246 (453)
T TIGR00457 168 CEGAGELFRVSTDGIDFSQDFFGKEAYLTVSGQLYLETY-ALALSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFANL 246 (453)
T ss_pred CCCCCCceEecccccccchhccCCccccccCHHHHHHHH-hhcccCceEeeeccccCCCCCCcCcchhccceeeeecCCH
Confidence 777789998862 38999999999999999976 689999999999999999997 899999999999999999
Q ss_pred HHHHHHHHHHHhcccccC
Q psy11418 315 NDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 315 ~~~m~~~e~li~~~~~~~ 332 (553)
+|+|+++|++++++++.+
T Consensus 247 ~dvm~~~E~lv~~i~~~~ 264 (453)
T TIGR00457 247 NDLLQLAETLIKYIIKAV 264 (453)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999997654
No 18
>PLN02903 aminoacyl-tRNA ligase
Probab=100.00 E-value=5.9e-52 Score=456.55 Aligned_cols=251 Identities=24% Similarity=0.447 Sum_probs=213.4
Q ss_pred cccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCC
Q psy11418 67 TVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRG 146 (553)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~g 146 (553)
.+||++.++... ..|++|+|+|||+++|.+| +++|++|||++|.+|||++.+.. .+ ..+.++.|+.|
T Consensus 58 ~rt~~cg~l~~~---------~~gk~V~l~GWV~~~R~~G-~l~FidLRD~~G~iQvV~~~~~~--~~-~~~~~~~L~~e 124 (652)
T PLN02903 58 SRSHLCGALSVN---------DVGSRVTLCGWVDLHRDMG-GLTFLDVRDHTGIVQVVTLPDEF--PE-AHRTANRLRNE 124 (652)
T ss_pred cCCCchhhcchh---------hCCCEEEEEEEEEEEecCC-CcEEEEEEcCCccEEEEEeCCcc--HH-HHHHHhcCCCC
Confidence 356666665432 3678899999999999999 89999999999999999987532 23 33567889999
Q ss_pred cEEEEEeecccc---------cCCceeEeeeeEEEeccCCCCCCCCCCC------CCCcchhhcccchhhhccHHHHHHH
Q psy11418 147 DIIGVTGSPGKT---------KKGELSIIPKKLTLLSPCLHMLPHMHFG------VKDKETRFRQRYLDLMINERIRHKF 211 (553)
Q Consensus 147 d~V~v~G~~~~t---------~~ge~~l~~~~i~il~~~~~~lP~~~~~------l~~~e~r~~~R~ldl~~~~~~~~~~ 211 (553)
|+|.|+|+|.+. ++|++||.+++++||++|..++|....+ ..+.++|+++|||||| ++.++++|
T Consensus 125 svV~V~G~V~~r~~~~~n~~~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR-~~~~q~~l 203 (652)
T PLN02903 125 YVVAVEGTVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLR-RPQMNANL 203 (652)
T ss_pred CEEEEEEEEEeCCCcCcCCCCCCCCEEEEEeEEEEEecCCCCCCccccccccccccCChhhhhccceeecC-CHHHHHHH
Confidence 999999998743 4699999999999999998778854332 2467899999999997 79999999
Q ss_pred HHHHHHHHHHHHHhhh-CCeEEEecceeccccCCCCCcceeeccCC-CCcceeeeeCHHHHHHHHHHccCCcEEEEcccc
Q psy11418 212 IVRAQIIAYVRRYLDS-LGFLEVETPMMNMIAGGATAKPFVTHHND-LNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQF 289 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~-~gF~EV~TPil~~~~gga~a~~F~t~~~~-~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~F 289 (553)
++||+|++++|+||.+ +||+||+||+|+.+.+++ |++|.+.... .+..+||+||||||+|+||++|++|||+|||||
T Consensus 204 r~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~eG-ardf~v~~~~~~g~~y~L~qSPQlykQ~Lm~~G~~RvFqIa~~F 282 (652)
T PLN02903 204 RLRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEG-ARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDRYYQIARCF 282 (652)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEECCeeccCCCCC-CcccEEeeecCCCcccccCCCHHHHHHHHHhccCCcEEEEehhh
Confidence 9999999999999997 999999999998543322 3567665432 355677999999999999999999999999999
Q ss_pred ccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcccccC
Q psy11418 290 RNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 290 R~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~~ 332 (553)
|+|+++++|+||||||||||+|+|++|+|+++|+|++++++.+
T Consensus 283 R~E~~~t~RhpEFTqLE~E~sf~d~~dvm~~~E~li~~v~~~~ 325 (652)
T PLN02903 283 RDEDLRADRQPEFTQLDMELAFTPLEDMLKLNEDLIRQVFKEI 325 (652)
T ss_pred ccCCCCCCcccceeeeeeeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999877999999999999999999999999999998744
No 19
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.2e-51 Score=455.57 Aligned_cols=248 Identities=28% Similarity=0.472 Sum_probs=216.1
Q ss_pred ccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCc
Q psy11418 68 VTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGD 147 (553)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd 147 (553)
+++++.++...+ .|++|+|+|||+++|.+| +++|++|||++|.+|+|++.. .+.| +.++.|+.||
T Consensus 4 r~~~~~~l~~~~---------~g~~V~l~GwV~~~R~~g-~l~Fi~LrD~~g~iQ~v~~~~----~~~~-~~~~~l~~es 68 (588)
T PRK00476 4 RTHYCGELRESH---------VGQTVTLCGWVHRRRDHG-GLIFIDLRDREGIVQVVFDPD----AEAF-EVAESLRSEY 68 (588)
T ss_pred cceeHHHhhHHh---------CCCEEEEEEEEEEEEeCC-CeEEEEEEeCCceEEEEEeCC----HHHH-HHHhCCCCCC
Confidence 566677665433 467899999999999999 999999999999999999862 2344 5668899999
Q ss_pred EEEEEeeccccc---------CCceeEeeeeEEEeccCCCCCCCCCCCC--CCcchhhcccchhhhccHHHHHHHHHHHH
Q psy11418 148 IIGVTGSPGKTK---------KGELSIIPKKLTLLSPCLHMLPHMHFGV--KDKETRFRQRYLDLMINERIRHKFIVRAQ 216 (553)
Q Consensus 148 ~V~v~G~~~~t~---------~ge~~l~~~~i~il~~~~~~lP~~~~~l--~~~e~r~~~R~ldl~~~~~~~~~~~~rs~ 216 (553)
+|.|+|++.+++ +|++||.+++++||++|. ++|....+. .+.++|+++|||||| ++.++++|++||+
T Consensus 69 ~V~V~G~v~~~~~~~~n~~~~~g~~El~~~~i~il~~a~-~lP~~~~~~~~~~~~~Rl~~R~LdlR-~~~~~~~l~~Rs~ 146 (588)
T PRK00476 69 VIQVTGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSK-TLPFPIDDEEDVSEELRLKYRYLDLR-RPEMQKNLKLRSK 146 (588)
T ss_pred EEEEEEEEEecCCcccCccCCCCcEEEEEeEEEEEecCC-CCCCcccccccCChhhhhhcceEeec-CHHHHHHHHHHHH
Confidence 999999998754 789999999999999998 788764332 467899999999997 8999999999999
Q ss_pred HHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccC-CCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCC
Q psy11418 217 IIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHN-DLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGID 295 (553)
Q Consensus 217 i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~-~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~ 295 (553)
+++++|+||.++||+||+||+|+++.+++ |++|.++.. +.+..+||++|||+|+|+|+++|++|||+||||||+|+++
T Consensus 147 i~~~iR~ff~~~gFiEV~TP~L~~s~~eg-a~~f~v~~~~~~~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR~E~~~ 225 (588)
T PRK00476 147 VTSAIRNFLDDNGFLEIETPILTKSTPEG-ARDYLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLR 225 (588)
T ss_pred HHHHHHHHHHHCCCEEEECCeeecCCCCC-CccceecccccCCceeecCCCHHHHHHHHHhcccCceEEEeceeecCCCC
Confidence 99999999999999999999998644332 578988755 4566778999999999999999999999999999999999
Q ss_pred CCccCCcceeeeEeccCCHHHHHHHHHHHHhcccccCC
Q psy11418 296 LTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDRN 333 (553)
Q Consensus 296 ~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~~~ 333 (553)
++|+|||||||||++|+|++|+|+++|++++++++.+.
T Consensus 226 ~~r~~EFt~le~e~af~~~~dvm~~~E~li~~i~~~~~ 263 (588)
T PRK00476 226 ADRQPEFTQIDIEMSFVTQEDVMALMEGLIRHVFKEVL 263 (588)
T ss_pred CCcCcccccceeeecCCCHHHHHHHHHHHHHHHHHHHh
Confidence 97777999999999999999999999999999987543
No 20
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=100.00 E-value=1.1e-51 Score=458.38 Aligned_cols=237 Identities=23% Similarity=0.457 Sum_probs=205.7
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc---------c
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---------K 159 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t---------~ 159 (553)
.|++|+|+|||+++|.+| +++|++|||++|.+|||++++.. +.+.| ..++.|+.||+|.|+|++.++ +
T Consensus 17 ~g~~V~l~GWV~~~R~~G-~l~FidLRD~~G~iQvV~~~~~~-~~~~~-~~~~~L~~EsvV~V~G~v~~r~~~~~n~~~~ 93 (706)
T PRK12820 17 TGREVCLAGWVDAFRDHG-ELLFIHLRDRNGFIQAVFSPEAA-PADVY-ELAASLRAEFCVALQGEVQKRLEETENPHIE 93 (706)
T ss_pred CCCEEEEEEEEEEEEcCC-CcEEEEEEeCCccEEEEEeCCcC-CHHHH-HHHhcCCCCCEEEEEeEEeccCccccCCCCC
Confidence 577899999999999999 89999999999999999987643 33333 567889999999999998763 3
Q ss_pred CCceeEeeeeEEEeccCC-CCCCCC--CC---------CCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhh
Q psy11418 160 KGELSIIPKKLTLLSPCL-HMLPHM--HF---------GVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDS 227 (553)
Q Consensus 160 ~ge~~l~~~~i~il~~~~-~~lP~~--~~---------~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~ 227 (553)
+|++||.+++++||++|. .|+|.. ++ ...+.++|+++|||||| ++.++++|++||.+++++|+||.+
T Consensus 94 tg~iEl~~~~i~iL~~a~~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR-~~~~~~~lr~Rs~i~~~iR~fl~~ 172 (706)
T PRK12820 94 TGDIEVFVRELSILAASEALPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIR-RPAMQDHLAKRHRIIKCARDFLDS 172 (706)
T ss_pred CCcEEEEeeEEEEEecCCCCCCCCcccccccccccccccccCHhhhhhCceeecC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999996 234321 11 13467899999999996 899999999999999999999999
Q ss_pred CCeEEEecceeccccCCCCCcceeeccCCCCccee-eeeCHHHHHHHHHHccCCcEEEEccccccCCCCCCccCCcceee
Q psy11418 228 LGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLY-MRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCE 306 (553)
Q Consensus 228 ~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~-L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE 306 (553)
+||+||+||+|+.+.+++ |++|.++.++++..+| |+||||||+|+|+++|++|||+||||||+|+++++|+|||||||
T Consensus 173 ~gFiEVeTPiL~~s~~eG-Ar~~~~p~~~~~~~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR~E~~~t~r~pEFT~LE 251 (706)
T PRK12820 173 RGFLEIETPILTKSTPEG-ARDYLVPSRIHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQPEFTQLD 251 (706)
T ss_pred CCCEEEeCCccccCCCCC-CcceEEeeecCCCcceecCCCHHHHHHHHHhccCCcEEEEechhcCCCCCCCcCccccccc
Confidence 999999999998543332 4778776666666665 99999999999999999999999999999999998889999999
Q ss_pred eEeccCCHHHHHHHHHHHHhcccc
Q psy11418 307 FYMAYADYNDLMHLTEDLISGRKE 330 (553)
Q Consensus 307 ~e~a~~~~~~~m~~~e~li~~~~~ 330 (553)
|||+|+|++|+|+++|+||+++++
T Consensus 252 ~E~af~d~~dvm~l~E~li~~v~~ 275 (706)
T PRK12820 252 IEASFIDEEFIFELIEELTARMFA 275 (706)
T ss_pred eeeccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999986
No 21
>PLN02603 asparaginyl-tRNA synthetase
Probab=100.00 E-value=6.5e-50 Score=437.47 Aligned_cols=240 Identities=18% Similarity=0.232 Sum_probs=206.4
Q ss_pred ccCCcEEEEEEEEEeeecCCCceEEEEEEeCCE--EEEEEEecccCCCHHHHHHHhc-cCCCCcEEEEEeecccccCCc-
Q psy11418 87 VLENVTLSVAGRVHAIRESGTKLMFYDLRGEGL--KIQVMANARMYQSEEEFASDLV-KIKRGDIIGVTGSPGKTKKGE- 162 (553)
Q Consensus 87 ~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~--~iQvv~~~~~~~~~~~~~~~~~-~l~~gd~V~v~G~~~~t~~ge- 162 (553)
...|++|+|+|||+++|.+| +++|++|+|+++ .||||++++. ..|....+ .|+.||+|.|+|++.+++.++
T Consensus 104 ~~~g~~V~v~GwV~~iR~~g-~~~Fi~l~Dgs~~~~lQ~v~~~~~----~~~~~l~~~~l~~gs~V~V~G~v~~~~~~~~ 178 (565)
T PLN02603 104 ARVGKTLNVMGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTPDA----EGYDQVESGLITTGASVLVQGTVVSSQGGKQ 178 (565)
T ss_pred ccCCCEEEEEEEEEEEEeCC-CeEEEEEECCCCCEeEEEEEECcH----HHHHHHhhcCCCCCCEEEEEEEEEecCCCCc
Confidence 44688999999999999999 999999999985 7999997652 34433322 499999999999999877555
Q ss_pred -eeEeeeeEEEeccCCCCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccc
Q psy11418 163 -LSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI 241 (553)
Q Consensus 163 -~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~ 241 (553)
+||.++++++|++|+.++|..... ...+.....+|||+| ++.++++|++||++++++|+||.++||+||+||+|+++
T Consensus 179 ~~EL~v~~i~vlg~a~~~~Pi~~~~-~s~e~lr~~~hLr~R-t~~~~ai~RiRS~i~~air~ff~~~gF~eV~TPiLt~s 256 (565)
T PLN02603 179 KVELKVSKIVVVGKSDPSYPIQKKR-VSREFLRTKAHLRPR-TNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITAS 256 (565)
T ss_pred cEEEEEeEEEEEECCCCCCCCcccc-cchhhhhhhhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeccc
Confidence 999999999999998888865432 235667778899997 79999999999999999999999999999999999876
Q ss_pred cCCCCCcceee-c---------------------------cCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCC
Q psy11418 242 AGGATAKPFVT-H---------------------------HNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEG 293 (553)
Q Consensus 242 ~gga~a~~F~t-~---------------------------~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~ 293 (553)
.++++++.|.+ + .+|||+++||++|||||+|.+ ++|++|||+||||||||+
T Consensus 257 ~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~~E~~-~~~l~rVy~igp~FRaE~ 335 (565)
T PLN02603 257 DCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETY-ATALSDVYTFGPTFRAEN 335 (565)
T ss_pred CCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchHHHHHH-HhcccceEEEecceeCCC
Confidence 65555666643 2 257899999999999999985 679999999999999999
Q ss_pred CCC-CccCCcceeeeEeccCCHHHHHHHHHHHHhcccccCCC
Q psy11418 294 IDL-THNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDRNR 334 (553)
Q Consensus 294 ~~~-~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~~~~ 334 (553)
+++ |||+||||||+||+|+|++|+|+++|++|+++++.+..
T Consensus 336 s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~~~~~v~~ 377 (565)
T PLN02603 336 SNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILE 377 (565)
T ss_pred CCCccccccceeeeeeeecCCHHHHHHHHHHHHHHHHHHHHc
Confidence 997 89999999999999999999999999999999766543
No 22
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-50 Score=423.07 Aligned_cols=243 Identities=29% Similarity=0.518 Sum_probs=213.1
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc---------
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT--------- 158 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t--------- 158 (553)
..|++|+++|||++.|++| +++|+||||.+|.+|||++.+. +.+.| +.+..|+.+++|.|+|+|.+-
T Consensus 13 ~vG~~V~L~GWV~r~Rd~G-gliFiDLRDr~GivQvv~~~~~--~~~~~-~~a~~lr~E~vi~V~G~V~~R~e~~~N~~l 88 (585)
T COG0173 13 HVGQTVTLSGWVHRRRDHG-GLIFIDLRDREGIVQVVFDPED--SPEAF-EVASRLRNEFVIQVTGTVRARPEGTINPNL 88 (585)
T ss_pred HCCCEEEEEeeeeeccccC-CeEEEEcccCCCeEEEEECCcc--CHHHH-HHHHhcCceEEEEEEEEEEecCccccCCCC
Confidence 4789999999999999999 8999999999999999999863 34556 578899999999999987632
Q ss_pred cCCceeEeeeeEEEeccCCCCCCCCCCC--CCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecc
Q psy11418 159 KKGELSIIPKKLTLLSPCLHMLPHMHFG--VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETP 236 (553)
Q Consensus 159 ~~ge~~l~~~~i~il~~~~~~lP~~~~~--l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TP 236 (553)
++|++||.+++|+||++|. ++|....+ -...|+|+++|||||| +|.+.+.+++||+++.++|+||+++||+||+||
T Consensus 89 ~TGeiEv~a~~i~vln~s~-~lPf~i~d~~~~~Ee~RLkYRyLDLR-R~~m~~~l~lR~kv~~~iR~~ld~~gF~EiETP 166 (585)
T COG0173 89 PTGEIEVLAEEIEVLNASK-TLPFQIEDETNASEEIRLKYRYLDLR-RPEMQKNLKLRSKVTKAIRNFLDDQGFLEIETP 166 (585)
T ss_pred CcceEEEEeeeEEEEecCC-CCCcCCCCCCCcchhhhhhhhhhhhc-CHHHHHHHHHHHHHHHHHHHHHhhcCCeEeecC
Confidence 5899999999999999885 45643322 2456889999999997 799999999999999999999999999999999
Q ss_pred eec-cccCCCCCcceeeccCCCCccee-eeeCHHHHHHHHHHccCCcEEEEccccccCCCCCCccCCcceeeeEeccCCH
Q psy11418 237 MMN-MIAGGATAKPFVTHHNDLNMDLY-MRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADY 314 (553)
Q Consensus 237 il~-~~~gga~a~~F~t~~~~~~~~~~-L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~ 314 (553)
+|+ ++|.| |+-|.++..-..-.+| |.||||||+|.||++||+|+|+|++|||+|+..+.+.|||||+|+||+|.+-
T Consensus 167 iLtkSTPEG--ARDfLVPSRv~~G~FYALPQSPQlfKQLLMvsGfdRYyQIarCFRDEDlRaDRQPEFTQiD~EmSF~~~ 244 (585)
T COG0173 167 ILTKSTPEG--ARDFLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDLEMSFVDE 244 (585)
T ss_pred ccccCCCcc--ccccccccccCCCceeecCCCHHHHHHHHHHhcccceeeeeeeecccccccccCCcceeEeEEeecCCH
Confidence 998 56766 4888886554444455 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCCcccc
Q psy11418 315 NDLMHLTEDLISGRKEDRNRPCVM 338 (553)
Q Consensus 315 ~~~m~~~e~li~~~~~~~~~iqv~ 338 (553)
+|+|+++|+|+.++++....+-+.
T Consensus 245 edv~~~~E~l~~~vf~~~~~i~l~ 268 (585)
T COG0173 245 EDVMELIEKLLRYVFKEVKGIELK 268 (585)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccC
Confidence 999999999999999876654433
No 23
>PLN02221 asparaginyl-tRNA synthetase
Probab=100.00 E-value=9e-50 Score=436.33 Aligned_cols=253 Identities=17% Similarity=0.226 Sum_probs=206.7
Q ss_pred ccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCC-ceEEEEEEeCC--EEEEEEEecccCCCHHHHHHHhccCC
Q psy11418 68 VTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGT-KLMFYDLRGEG--LKIQVMANARMYQSEEEFASDLVKIK 144 (553)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~-kl~Fi~l~d~~--~~iQvv~~~~~~~~~~~~~~~~~~l~ 144 (553)
...+++++..+- ..+....|++|+|+|||+++|.+|+ +++|++|||++ |.||||+.++.. . ..+.|+
T Consensus 31 ~~~~~~~~~~~~---~~~~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~~~~----~---~~~~L~ 100 (572)
T PLN02221 31 DRVLIRSILDRP---DGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDSSLY----D---LSTLVA 100 (572)
T ss_pred CceEHHHHhccc---cCChhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcCchh----h---HHhcCC
Confidence 333566654221 1233446889999999999999994 38999999999 799999976421 1 123689
Q ss_pred CCcEEEEEeecccc-----cCCceeEeeeeEEEeccCC-CCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHH
Q psy11418 145 RGDIIGVTGSPGKT-----KKGELSIIPKKLTLLSPCL-HMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQII 218 (553)
Q Consensus 145 ~gd~V~v~G~~~~t-----~~ge~~l~~~~i~il~~~~-~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~ 218 (553)
.|++|.|+|++.++ ++|++||+++++.|+|+|. .++|..... .+.+.++++|||++| ++.++++|++||.+.
T Consensus 101 ~ES~V~V~G~V~~~~~~~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~-~~~e~lrr~~hLR~R-~~~~~Ai~RiRS~i~ 178 (572)
T PLN02221 101 TGTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYPLPKTK-LTLEFLRDVLHLRSR-TNSISAVARIRNALA 178 (572)
T ss_pred CceEEEEEEEEEeCCccCCCCccEEEEEeEEEEEecCCCCCCCCCCCc-CChHHHhhcchhhcC-CHHHHHHHHHHHHHH
Confidence 99999999998765 3568999999999999986 467754322 245667777777775 899999999999999
Q ss_pred HHHHHHhhhCCeEEEecceeccccCCCCCcceeec---------------------------------------------
Q psy11418 219 AYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTH--------------------------------------------- 253 (553)
Q Consensus 219 ~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~--------------------------------------------- 253 (553)
+++|+||.++||+||+||+|+.+.++++++.|.+.
T Consensus 179 ~aiR~ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (572)
T PLN02221 179 FATHSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAK 258 (572)
T ss_pred HHHHHHHHHCCCEEEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhccc
Confidence 99999999999999999999765444445666541
Q ss_pred -------------------------------------------cCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccc
Q psy11418 254 -------------------------------------------HNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFR 290 (553)
Q Consensus 254 -------------------------------------------~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR 290 (553)
.+|||+++||++|||||+|+++ +|++|||+||||||
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~~-~~l~rVfeIgP~FR 337 (572)
T PLN02221 259 ASKEEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETYA-CALSSVYTFGPTFR 337 (572)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHHHHH-HhcCCeEEEcccee
Confidence 1699999999999999999964 68999999999999
Q ss_pred cCCCCC-CccCCcceeeeEeccCCHHHHHHHHHHHHhcccccCC
Q psy11418 291 NEGIDL-THNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDRN 333 (553)
Q Consensus 291 ~E~~~~-~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~~~ 333 (553)
||++++ ||||||||+|+||+|.|++|+|+++|+||+++++.+.
T Consensus 338 AE~s~T~RHL~EFtmlE~Emaf~d~~dvm~l~E~lv~~i~~~l~ 381 (572)
T PLN02221 338 AENSHTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCKWLL 381 (572)
T ss_pred cCCCCCCcccccccceeeeeecCCHHHHHHHHHHHHHHHHHHHH
Confidence 999965 8999999999999999999999999999999976553
No 24
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=100.00 E-value=5e-48 Score=421.78 Aligned_cols=236 Identities=21% Similarity=0.290 Sum_probs=202.2
Q ss_pred cCCcEEEEEEEEEeeecCCC-ceEEEEEEeCCE--EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc-----
Q psy11418 88 LENVTLSVAGRVHAIRESGT-KLMFYDLRGEGL--KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK----- 159 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~-kl~Fi~l~d~~~--~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~----- 159 (553)
..|++|+|+|||+++|.+|+ +++|++|+|+++ .+|||+++. ...| ..+++|+.|++|.|+|++.+++
T Consensus 79 ~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~----~~~~-~~l~~l~~gs~v~v~G~v~~~~~~~~n 153 (586)
T PTZ00425 79 YIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQS----IENY-EKLLKCGVGCCFRFTGKLIISPVQNEN 153 (586)
T ss_pred cCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCc----hHHH-HHHhcCCCccEEEEEEEEEcCCccccC
Confidence 46889999999999999984 599999999997 699999754 2344 3567799999999999987542
Q ss_pred -----CCceeEee-----eeEEEeccCC--CCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhh
Q psy11418 160 -----KGELSIIP-----KKLTLLSPCL--HMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDS 227 (553)
Q Consensus 160 -----~ge~~l~~-----~~i~il~~~~--~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~ 227 (553)
+|.+||.+ ++++||+++. .++|.... -...|.+..+||||+| ++.++++||+||.+..++|+||.+
T Consensus 154 ~~g~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k-~~~~e~lr~~rhL~lR-~~~~~avlRiRs~l~~a~r~ff~~ 231 (586)
T PTZ00425 154 KKGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKK-NHGKEFLREVAHLRPR-SYFISSVIRIRNALAIATHLFFQS 231 (586)
T ss_pred cCCCCCccEEEEEecCCCceEEEEeccCCCCCCCCCCc-cCChhhhhhccceecc-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689987 7999999884 35564322 2356888899999997 799999999999999999999999
Q ss_pred CCeEEEecceeccccCCCCCcceeec------------------------------------------------------
Q psy11418 228 LGFLEVETPMMNMIAGGATAKPFVTH------------------------------------------------------ 253 (553)
Q Consensus 228 ~gF~EV~TPil~~~~gga~a~~F~t~------------------------------------------------------ 253 (553)
+||+||+||+|+++.++++++.|.+.
T Consensus 232 ~gF~eI~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 311 (586)
T PTZ00425 232 RGFLYIHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAYPD 311 (586)
T ss_pred CCCEEeeCCeecccCCCCCcceEEeeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999876655556778651
Q ss_pred -------cCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCCHHHHHHHHHHHH
Q psy11418 254 -------HNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYADYNDLMHLTEDLI 325 (553)
Q Consensus 254 -------~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~~~~~m~~~e~li 325 (553)
.+|||+++||++|||||||++ ++|++|||+||||||||++++ ||++||||+|+||+|+|++|+|+++|++|
T Consensus 312 ~~~~~~~~~yF~k~ayL~~S~QLylE~~-~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li 390 (586)
T PTZ00425 312 QYLIDYKKDFFSKQAFLTVSGQLSLENL-CSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADLYDNMELAESYI 390 (586)
T ss_pred cccccccccccCcceEEEcCchHHHHHH-HhccCCEEEEeceEeCCCCCCCCCCcccceEEEEEecCCHHHHHHHHHHHH
Confidence 168999999999999999986 588999999999999999986 89999999999999999999999999999
Q ss_pred hccccc
Q psy11418 326 SGRKED 331 (553)
Q Consensus 326 ~~~~~~ 331 (553)
+++++.
T Consensus 391 ~~v~~~ 396 (586)
T PTZ00425 391 KYCIGY 396 (586)
T ss_pred HHHHHH
Confidence 999643
No 25
>KOG0556|consensus
Probab=100.00 E-value=1.5e-47 Score=388.42 Aligned_cols=243 Identities=28% Similarity=0.422 Sum_probs=216.5
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccC-CCHHHHHHHhccCCCCcEEEEEeeccccc-------
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMY-QSEEEFASDLVKIKRGDIIGVTGSPGKTK------- 159 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~-~~~~~~~~~~~~l~~gd~V~v~G~~~~t~------- 159 (553)
..+..|+|+|||+..|..| |++|+.||+++.++||++..+.. ....++.++.+.|..+|+|.|.|+|.+.+
T Consensus 80 ~~~~~V~vRgrVhtsr~~G-K~~FlvLRq~~~tVQ~~~~~~~~~~isk~Mvkf~~~is~ESiV~v~g~v~k~~~~i~scT 158 (533)
T KOG0556|consen 80 NDGSEVLVRGRVHTSRLKG-KLCFLVLRQQGSTVQCLVAVNEDGTISKQMVKFAGSISKESIVDVRGVVVKVKEPIKSCT 158 (533)
T ss_pred cCCceEEEEEEEeeccccc-eEEEEEEeccCceEEEEEEcCCCchHHHHHHHHHhhcCcceEEEEEEEEecCCCcccccc
Confidence 3567899999999999999 99999999999999999977643 23567888899999999999999988653
Q ss_pred CCceeEeeeeEEEeccCCCCCCCCCC-------------------CCCCcchhhcccchhhhccHHHHHHHHHHHHHHHH
Q psy11418 160 KGELSIIPKKLTLLSPCLHMLPHMHF-------------------GVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAY 220 (553)
Q Consensus 160 ~ge~~l~~~~i~il~~~~~~lP~~~~-------------------~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ 220 (553)
++.+||++..+.++|.++..||.... .-.+.++|+++|.|||| +|..+++|++++.|+.+
T Consensus 159 ~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRvlDLR-tptnqAiFriq~gvc~~ 237 (533)
T KOG0556|consen 159 VQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRVLDLR-TPTNQAIFRIQAGVCFA 237 (533)
T ss_pred cceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccceeeecc-cccchheeehHHHHHHH
Confidence 46799999999999999998985310 01246789999999997 89999999999999999
Q ss_pred HHHHhhhCCeEEEecceec--cccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-C
Q psy11418 221 VRRYLDSLGFLEVETPMMN--MIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-T 297 (553)
Q Consensus 221 ir~fl~~~gF~EV~TPil~--~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~ 297 (553)
+|+||..+||+||+||.|. +++||+ ..|.+ .||+.++||.||||||+|++++|+|+|||+|||+||+|++++ |
T Consensus 238 FRe~L~~kgF~EIhTpKli~asSEGGa--nvF~v--~Yfk~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdSnthR 313 (533)
T KOG0556|consen 238 FREYLRSKGFVEIHTPKLIGASSEGGA--NVFRV--SYFKQKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDSNTHR 313 (533)
T ss_pred HHHHHHhcCcceecccccccccCCCCc--eeEEE--EeccCcchhhcChHHHHHHHHhcchhheeeecceeeccccchhh
Confidence 9999999999999999996 456665 47876 699999999999999999999999999999999999999998 8
Q ss_pred ccCCcceeeeEeccC-CHHHHHHHHHHHHhcccccCCCcc
Q psy11418 298 HNPEFTTCEFYMAYA-DYNDLMHLTEDLISGRKEDRNRPC 336 (553)
Q Consensus 298 H~~EFt~lE~e~a~~-~~~~~m~~~e~li~~~~~~~~~iq 336 (553)
|+.||+.||+||+|. +|+|+|+++.+++-.+++++.+.+
T Consensus 314 hltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~ery 353 (533)
T KOG0556|consen 314 HLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRERY 353 (533)
T ss_pred hhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997 799999999999999998886653
No 26
>PLN02532 asparagine-tRNA synthetase
Probab=100.00 E-value=1.6e-46 Score=411.79 Aligned_cols=220 Identities=16% Similarity=0.196 Sum_probs=188.3
Q ss_pred eecCCCceEEEEEEeCCEE--EEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc----cCCceeEeeeeEEEecc
Q psy11418 102 IRESGTKLMFYDLRGEGLK--IQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT----KKGELSIIPKKLTLLSP 175 (553)
Q Consensus 102 ~R~~g~kl~Fi~l~d~~~~--iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t----~~ge~~l~~~~i~il~~ 175 (553)
.|.+| +++|++|||+++. +|||++++.. .+ .+.|+.|++|.|+|++..+ ++|++||.+++|+||++
T Consensus 129 ~r~~g-~i~FI~LrDGSg~~~lQvVv~~~~~----~~---~~~L~~Es~V~V~G~V~~~~~~~~~g~iEl~v~~i~VLg~ 200 (633)
T PLN02532 129 APPPP-SVAYLLISDGSCVASLQVVVDSALA----PL---TQLMATGTCILAEGVLKLPLPAQGKHVIELEVEKILHIGT 200 (633)
T ss_pred cccCC-CcEEEEEECCCCccceEEEEeCCcc----cH---hhcCCCceEEEEEEEEEecCCCCCCCcEEEEeeEEEEEec
Confidence 78898 9999999999986 9999987642 11 2579999999999999866 27899999999999998
Q ss_pred CC-CCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceee--
Q psy11418 176 CL-HMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVT-- 252 (553)
Q Consensus 176 ~~-~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t-- 252 (553)
+. .++|..... ...|.++++||||+| ++.++++|++||.+..++|+||+++||+||+||+|+.+.++++++.|.+
T Consensus 201 a~~~p~Pi~~k~-~~~E~LR~~RhLdLR-t~~~~ailRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s~~EGa~elF~v~t 278 (633)
T PLN02532 201 VDPEKYPLSKKR-LPLDMLRDFSHFRPR-TTTVASVTRVRSALTHATHTFFQDHGFLYVQVPIITTTDATGFGEMFRVTT 278 (633)
T ss_pred CCCCCCcccccc-CCHHHHhhCcceecC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCccccccceec
Confidence 75 567754322 356777799999996 8999999999999999999999999999999999975443333344322
Q ss_pred --------------------------------------------------------------------------------
Q psy11418 253 -------------------------------------------------------------------------------- 252 (553)
Q Consensus 253 -------------------------------------------------------------------------------- 252 (553)
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (633)
T PLN02532 279 LLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTNQLASQLEAKEKLKTGTSVKA 358 (633)
T ss_pred cccccccccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred -----ccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCCHHHHHHHHHHHHh
Q psy11418 253 -----HHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYADYNDLMHLTEDLIS 326 (553)
Q Consensus 253 -----~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~~~~~m~~~e~li~ 326 (553)
..+|||+++||++|||||||+++ +||+|||+|||+||||+++| |||+||||||+||+|+|++|+|+++|+||+
T Consensus 359 ~~~~f~~dyFg~~ayLtqS~QLylE~~~-~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~d~~dvM~l~E~lI~ 437 (633)
T PLN02532 359 DKLSFSKDFFSRPTYLTVSGRLHLESYA-CALGNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSELEDAMNCAEDYFK 437 (633)
T ss_pred cccccccccCCCCeeeccCHHHHHHHHH-HhcCceEEEccceecCCCCCCcccccccceeeeehhcCHHHHHHHHHHHHH
Confidence 12589999999999999999965 69999999999999999996 899999999999999999999999999999
Q ss_pred cccccC
Q psy11418 327 GRKEDR 332 (553)
Q Consensus 327 ~~~~~~ 332 (553)
++++.+
T Consensus 438 ~v~k~v 443 (633)
T PLN02532 438 FLCKWV 443 (633)
T ss_pred HHHHHH
Confidence 996554
No 27
>KOG0555|consensus
Probab=100.00 E-value=1.7e-43 Score=357.57 Aligned_cols=289 Identities=19% Similarity=0.247 Sum_probs=224.5
Q ss_pred cccccchhhhhhhccccccccCChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCcccccCCcEEEEE
Q psy11418 17 NSQQHTTAQTVTHLNTNYTQQCLTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVA 96 (553)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~ 96 (553)
|+++|+-.++..|..++.+.+.+. -+.|.+.+++.++..+.-+|+ ...+.....|+ +....|+.|+|.
T Consensus 62 kk~~kg~~~~~~k~~k~~~~ea~~---~ek~~~~le~a~ki~ised~s-----lp~ak~iki~~----s~~~r~qrVkv~ 129 (545)
T KOG0555|consen 62 KKIKKGWVRECKKSAKASQKEAEA---SEKREKNLEEAKKITISEDKS-----LPAAKKIKIYD----STENRGQRVKVF 129 (545)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHhHHhhhcccccCCCC-----Cchhheeeecc----cccccCceEEee
Confidence 444444444555544444422222 233445566666555543332 11111122222 233468899999
Q ss_pred EEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecc-----cccCCceeEeeeeEE
Q psy11418 97 GRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPG-----KTKKGELSIIPKKLT 171 (553)
Q Consensus 97 Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~-----~t~~ge~~l~~~~i~ 171 (553)
|||+++|.++ +++|+.||||+|.+|||++.+.+. .+. .-.|..++.|.|.|++. |+..|+.||.|+.|+
T Consensus 130 gWVhrlR~qk-~l~FivLrdg~gflqCVl~~kl~~---~yd--~~~Ls~essv~vYG~i~~~p~GK~apgghEl~vdy~E 203 (545)
T KOG0555|consen 130 GWVHRLRRQK-SLIFIVLRDGTGFLQCVLSDKLCQ---SYD--ALTLSTESSVTVYGTIKKLPEGKSAPGGHELNVDYWE 203 (545)
T ss_pred hhhHhhhhcC-ceEEEEEecCCceEEEEEcchhhh---hhc--cccccccceEEEEEEEecCcCCCCCCCCceEEeeeee
Confidence 9999999996 999999999999999999998762 232 33589999999999986 456889999999999
Q ss_pred EeccCCCC-CCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceec--cccCCCCCc
Q psy11418 172 LLSPCLHM-LPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMN--MIAGGATAK 248 (553)
Q Consensus 172 il~~~~~~-lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~--~~~gga~a~ 248 (553)
|++.+..+ .......-++++..+++|||-+| ....+.++++|+.+++++|++|.+.|++||.+|+|. +++||++
T Consensus 204 iig~Apag~~~n~lne~s~~~~~LdnrHl~iR-ge~~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVEGGsT-- 280 (545)
T KOG0555|consen 204 IIGLAPAGGFDNPLNEESDVDVLLDNRHLVIR-GENASKVLKARAALLRAMRDHYFERGYTEVTPPTMVQTQVEGGST-- 280 (545)
T ss_pred eecccCCCcccccccccCCcceEeccceeEEe-chhHHHHHHHHHHHHHHHHHHHHhcCceecCCCceEEEEecCcce--
Confidence 99987543 11111223567889999999996 888999999999999999999999999999999995 5788875
Q ss_pred ceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCCHHHHHHHHHHHHhc
Q psy11418 249 PFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYADYNDLMHLTEDLISG 327 (553)
Q Consensus 249 ~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~ 327 (553)
.|. .||||.++||+||+||||+.++ ..+++||+|.++||+|.+.| |||+|||++|+|++|.+++|+|+.+|.++++
T Consensus 281 LFk--ldYyGEeAyLTQSSQLYLEtcl-pAlgdvy~I~~SyRAEkSrTRRHLsEytHVEaE~afltfd~ll~~iE~lvc~ 357 (545)
T KOG0555|consen 281 LFK--LDYYGEEAYLTQSSQLYLETCL-PALGDVYCIQQSYRAEKSRTRRHLSEYTHVEAECAFLTFDDLLDRIEALVCD 357 (545)
T ss_pred EEe--ecccCchhhccchhHHHHHHhh-hhcCceeEecHhhhhhhhhhhhhhhhheeeeeecccccHHHHHHHHHHHHHH
Confidence 565 4899999999999999999976 57999999999999999998 6999999999999999999999999999988
Q ss_pred cc
Q psy11418 328 RK 329 (553)
Q Consensus 328 ~~ 329 (553)
.+
T Consensus 358 ~v 359 (545)
T KOG0555|consen 358 SV 359 (545)
T ss_pred HH
Confidence 83
No 28
>KOG2411|consensus
Probab=100.00 E-value=1.4e-40 Score=344.70 Aligned_cols=242 Identities=27% Similarity=0.463 Sum_probs=208.7
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecc---------cc
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPG---------KT 158 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~---------~t 158 (553)
..|+.|.++||+...|.+| .+.|..|||..|.+|+.++.+.. +.. ......++.+|+|.|.|++. +.
T Consensus 45 ~vg~kv~l~GWl~~~~~~k-~~~F~~LRD~~G~vq~lls~~s~-~l~--~~~~~~v~~e~vv~v~gtvv~Rp~~sin~km 120 (628)
T KOG2411|consen 45 DVGKKVVLCGWLELHRVHK-MLTFFNLRDAYGIVQQLLSPDSF-PLA--QKLENDVPLEDVVQVEGTVVSRPNESINSKM 120 (628)
T ss_pred ccCCEEEEeeeeeeeeccc-cceEEEeeccCcceEEEecchhh-hHH--hcccCCCChhheEeeeeeEecccccccCccc
Confidence 4788999999999999997 89999999999999999887653 111 12345689999999999875 33
Q ss_pred cCCceeEeeeeEEEeccCCCCCCCCCCC------CCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhC-CeE
Q psy11418 159 KKGELSIIPKKLTLLSPCLHMLPHMHFG------VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSL-GFL 231 (553)
Q Consensus 159 ~~ge~~l~~~~i~il~~~~~~lP~~~~~------l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~-gF~ 231 (553)
++|.+|+.+..+++++++...+|..... .....+|+++|||||| ++.++..++.||.+...+|+||.++ ||+
T Consensus 121 ~tg~vev~~e~~~vln~~~~~~p~~v~df~~ld~~~~er~rl~~RyldLR-~~kmq~nLrlRS~~v~~iR~yl~n~~GFv 199 (628)
T KOG2411|consen 121 KTGFVEVVAEKVEVLNPVNKKLPFEVTDFKELDDLAGERIRLRFRYLDLR-RPKMQNNLRLRSNVVKKIRRYLNNRHGFV 199 (628)
T ss_pred cccceEEEeeeeEEecCccCCCccchhhhhhhhccccccccchhhhhhhc-cHHHHHHHHHHHHHHHHHHHHHhhhcCee
Confidence 5899999999999999999888854322 1235578999999997 8999999999999999999999655 799
Q ss_pred EEecceec-cccCCCCCcceeeccCCC-CcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCCCccCCcceeeeEe
Q psy11418 232 EVETPMMN-MIAGGATAKPFVTHHNDL-NMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYM 309 (553)
Q Consensus 232 EV~TPil~-~~~gga~a~~F~t~~~~~-~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~ 309 (553)
||+||+|- .+|||| +.|.++...- |.-+.|.||||+|+|+||++|++|+|+|++|||+|+....+.|||||+|+||
T Consensus 200 evETPtLFkrTPgGA--~EFvVPtr~~~g~FYaLpQSPQQfKQlLMvsGidrYyQiARCfRDEdlR~DRQPEFTQvD~EM 277 (628)
T KOG2411|consen 200 EVETPTLFKRTPGGA--REFVVPTRTPRGKFYALPQSPQQFKQLLMVSGIDRYYQIARCFRDEDLRADRQPEFTQVDMEM 277 (628)
T ss_pred eccCcchhccCCCcc--ceeecccCCCCCceeecCCCHHHHHHHHHHhchhhHHhHHhhhcccccCcccCCcceeeeeEE
Confidence 99999995 678885 7888765444 4545599999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHhcccccCCCcc
Q psy11418 310 AYADYNDLMHLTEDLISGRKEDRNRPC 336 (553)
Q Consensus 310 a~~~~~~~m~~~e~li~~~~~~~~~iq 336 (553)
+|+|.+|+|.++|+++.+++.....++
T Consensus 278 sF~~~~dim~liEdll~~~ws~~k~~~ 304 (628)
T KOG2411|consen 278 SFTDQEDIMKLIEDLLRYVWSEDKGIQ 304 (628)
T ss_pred eccCHHHHHHHHHHHHHHhchhhcCCC
Confidence 999999999999999999997776654
No 29
>KOG0554|consensus
Probab=100.00 E-value=1.8e-40 Score=337.42 Aligned_cols=229 Identities=21% Similarity=0.308 Sum_probs=198.5
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCE--EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc--CCce
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGL--KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGEL 163 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~--~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~--~ge~ 163 (553)
..|++++|.|||+++|..| +++|++|+||+. .+|||++++ ..+.+..|+.|.|+|.+..++ ++++
T Consensus 18 ~~g~~~~i~GWvKsvr~~~-~~~Fl~i~DGs~~~~lQvVv~~~----------~~q~la~Gt~i~~~g~l~~~~~~~q~i 86 (446)
T KOG0554|consen 18 RAGDTISIGGWVKSVRKLK-KVTFLDINDGSCPSPLQVVVDSE----------QSQLLATGTCISAEGVLKVSKGAKQQI 86 (446)
T ss_pred CCCCceeecchhhhccccc-ceEEEEecCCCCCcceEEEechH----------HhhhccccceEEEEeeEEeccchheee
Confidence 3678899999999999999 899999999984 899999873 346799999999999876554 5678
Q ss_pred eEeeeeEEEeccCCCCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccC
Q psy11418 164 SIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAG 243 (553)
Q Consensus 164 ~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~g 243 (553)
++.++++.+++.+..++|.....+ .+|...+.-||.. |+..+.+++|+||++..++++||+++||++|+||||++++|
T Consensus 87 el~~eki~~vG~v~~~ypl~Kk~l-t~e~LR~~~HLR~-Rt~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DC 164 (446)
T KOG0554|consen 87 ELNAEKIKVVGTVDESYPLQKKKL-TPEMLRDKLHLRS-RTAKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDC 164 (446)
T ss_pred eeeeeEEEEEeecCCCCCCccccC-CHHHHhhcccccc-hhhHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCC
Confidence 999999999999987766432222 2344445555555 58899999999999999999999999999999999998888
Q ss_pred CCCCcceeec------cCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCC-HH
Q psy11418 244 GATAKPFVTH------HNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYAD-YN 315 (553)
Q Consensus 244 ga~a~~F~t~------~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~-~~ 315 (553)
+++++.|.+. .++||+++||++|.|||++.+ ++++.|||++||+||+|++++ |||.||||+|.|+||++ ++
T Consensus 165 EGaGE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~~-a~~LsrvyTfgP~FRAEnS~tsRHLAEFwMlEaE~AF~~sl~ 243 (446)
T KOG0554|consen 165 EGAGEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEAM-ACALSRVYTFGPTFRAENSHTSRHLAEFWMLEAELAFAESLD 243 (446)
T ss_pred CCCcceEEEEecCcccccccCCceEEEEeceehHHHH-HhhhcceEeeccceecccCCchhHHhhhhhhhhHHHHHHHHH
Confidence 7778999763 358999999999999999975 689999999999999999997 89999999999999998 99
Q ss_pred HHHHHHHHHHhcccc
Q psy11418 316 DLMHLTEDLISGRKE 330 (553)
Q Consensus 316 ~~m~~~e~li~~~~~ 330 (553)
|+|.++|.+++++++
T Consensus 244 d~m~~~e~~~K~mik 258 (446)
T KOG0554|consen 244 DLMSCAEAYIKHMIK 258 (446)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999953
No 30
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=3.4e-35 Score=306.08 Aligned_cols=125 Identities=73% Similarity=1.255 Sum_probs=121.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEE
Q psy11418 204 NERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVY 283 (553)
Q Consensus 204 ~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVf 283 (553)
|+.++++|++||.+++++|+||.++||+||+||+|++.+||++++||.++.++++.++||++|||+|+|+++++|++|||
T Consensus 1 ~~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g~~~vf 80 (329)
T cd00775 1 NEEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVY 80 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEeccCCCCcceeeccCHHHHHHHHHhcCCCcEE
Confidence 67899999999999999999999999999999999988888889999998889999999999999999999999999999
Q ss_pred EEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcc
Q psy11418 284 EVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 284 ei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~ 328 (553)
+||||||+|+++++|||||||||||++|+|++|+|+++|++|+++
T Consensus 81 ~i~~~FR~E~~~~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~i 125 (329)
T cd00775 81 EIGRNFRNEGIDLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGL 125 (329)
T ss_pred EEeccccCCCCCCCCCCceEEEEEeeecCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988
No 31
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=100.00 E-value=1e-35 Score=311.39 Aligned_cols=143 Identities=39% Similarity=0.659 Sum_probs=127.4
Q ss_pred CcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeec---cCCCCcceeeee
Q psy11418 189 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTH---HNDLNMDLYMRI 265 (553)
Q Consensus 189 ~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~---~~~~~~~~~L~~ 265 (553)
|.|+|+++||||+| ++..+++|++||.|++++|+||.++||+||+||+|++..+++++++|.|. ..+++.++||++
T Consensus 1 ~~e~~~~~r~l~~r-~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~ 79 (335)
T PF00152_consen 1 DEETRLDNRHLDLR-TPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQ 79 (335)
T ss_dssp -HHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-S
T ss_pred Chhhhhhccceecc-CcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCc
Confidence 46899999999997 79999999999999999999999999999999999987777778999997 458899999999
Q ss_pred CHHHHHHHHHHccCCcEEEEccccccCCC-CCCccCCcceeeeEeccCCHHHHHHHHHHHHhcccccC
Q psy11418 266 APELYLKMLVVGGLDRVYEVGRQFRNEGI-DLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 266 Spql~lk~l~~~g~~rVfei~~~FR~E~~-~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~~ 332 (553)
|||+|+|+++++|++|||+||||||+|++ +.+|+|||||||||++|+|++++|+++|++|+++++.+
T Consensus 80 Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~ 147 (335)
T PF00152_consen 80 SPQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKEL 147 (335)
T ss_dssp SSHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 56899999999999999999999999999999997644
No 32
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=100.00 E-value=7.6e-35 Score=302.72 Aligned_cols=140 Identities=34% Similarity=0.530 Sum_probs=132.4
Q ss_pred CcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHH
Q psy11418 189 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPE 268 (553)
Q Consensus 189 ~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spq 268 (553)
+.++++++||||+| ++..++++++||.|++++|+||.++||+||+||+|+.+.++++++||.+ +++|.++||++|||
T Consensus 3 ~~~~~~~~r~l~lr-~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~--~~~~~~~yL~~Spq 79 (322)
T cd00776 3 NLETLLDNRHLDLR-TPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKV--SYFGKPAYLAQSPQ 79 (322)
T ss_pred ChHhhhhCceeeeC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCcccc--ccCCCcceecCCHH
Confidence 56899999999998 9999999999999999999999999999999999998888888999986 68999999999999
Q ss_pred HHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccC-CHHHHHHHHHHHHhcccccC
Q psy11418 269 LYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYA-DYNDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 269 l~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~-~~~~~m~~~e~li~~~~~~~ 332 (553)
||||+++++ ++|||+||||||||++++ ||||||||||||++|+ |++|+|+++|++|+++++.+
T Consensus 80 l~lk~l~~~-~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l 144 (322)
T cd00776 80 LYKEMLIAA-LERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRV 144 (322)
T ss_pred HHHHHHHHh-hhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 999999887 999999999999999987 8999999999999999 99999999999999996544
No 33
>PRK06462 asparagine synthetase A; Reviewed
Probab=100.00 E-value=9e-35 Score=303.42 Aligned_cols=141 Identities=26% Similarity=0.409 Sum_probs=127.8
Q ss_pred CcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccc-----cCCCCCcceee-ccCCCCccee
Q psy11418 189 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI-----AGGATAKPFVT-HHNDLNMDLY 262 (553)
Q Consensus 189 ~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-----~gga~a~~F~t-~~~~~~~~~~ 262 (553)
+.++|+++|+++++ |+..+++|++||+|++++|+||.++||+||+||+|+++ .+|+. +||.+ +.+++|+++|
T Consensus 9 ~~~~~~~~r~~~lr-~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~-~~~~~~~~~~~~~~~y 86 (335)
T PRK06462 9 EYEEFLRMSWKHIS-SEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSD-LPVKQISIDFYGVEYY 86 (335)
T ss_pred chhhhhhhHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCcccc-CCccccccccCCCcee
Confidence 56889999999996 99999999999999999999999999999999999754 34555 78864 5789999999
Q ss_pred eeeCHHHHHHHHHHccCCcEEEEccccccCCCCC---CccCCcceeeeEeccCCHHHHHHHHHHHHhcccccC
Q psy11418 263 MRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 263 L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~~ 332 (553)
|++|||+||| ++++|++|||+||||||||++++ +|||||||||||++|+|++|+|+++|++|+++++.+
T Consensus 87 L~~Spql~k~-ll~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~~~ 158 (335)
T PRK06462 87 LADSMILHKQ-LALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKEL 158 (335)
T ss_pred eccCHHHHHH-HHHhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999966 55678999999999999999999 999999999999999999999999999999986544
No 34
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=99.98 E-value=4.1e-32 Score=296.00 Aligned_cols=171 Identities=43% Similarity=0.759 Sum_probs=153.5
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCCh
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK 404 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~ 404 (553)
|..+-++.+.+|++++.... ..+.+...++.|+.||+|.|+|.+.++++|++||.+++++||++|..++|.++++..+.
T Consensus 85 F~~lrD~~g~iQ~~~~~~~~-~~~~~~~~~~~l~~Gd~V~v~G~~~~t~~gelel~~~~~~llsk~~~plP~~~~~~~d~ 163 (505)
T PRK12445 85 FVTLQDVGGRIQLYVARDSL-PEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQ 163 (505)
T ss_pred EEEEEeCCccEEEEEECCcc-chhhHHHHHhcCCCCCEEEEEEEEEecCCCcEEEEEeEEEEEecCCCCCCcccccccCh
Confidence 55677778899998874332 12234445678999999999999999999999999999999999999999999999999
Q ss_pred hhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhHH
Q psy11418 405 ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELY 484 (553)
Q Consensus 405 e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel~ 484 (553)
++|+++||||||+|+..+++|++||.++++||+||+++||+||+||+|++.+|||+++||.|++++|+.++||+||||||
T Consensus 164 e~r~r~Ryldl~~n~~~r~~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~~gGa~a~pF~t~~~~~~~~~yL~~SpELy 243 (505)
T PRK12445 164 EVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELY 243 (505)
T ss_pred hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeeEecCCCCcccceecccccCCcceeeecCHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHh-ccCcceEe
Q psy11418 485 LKST-HGSYKVTY 496 (553)
Q Consensus 485 ~k~l-~~~~~~~~ 496 (553)
+|+| +|+++++|
T Consensus 244 lKrlivgG~~rVf 256 (505)
T PRK12445 244 LKRLVVGGFERVF 256 (505)
T ss_pred HHHHHhccCCcEE
Confidence 9985 67777765
No 35
>KOG1885|consensus
Probab=99.98 E-value=3.8e-33 Score=288.15 Aligned_cols=171 Identities=65% Similarity=1.066 Sum_probs=162.5
Q ss_pred hcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCChh
Q psy11418 326 SGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKE 405 (553)
Q Consensus 326 ~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~e 405 (553)
-.+..+..++||++|.+++.+.++|....+.|+.||+|.|+|.+.+|++|+++|.+.++.+|++|..++|....++++.|
T Consensus 126 ydl~~~g~klQvm~~~~~~~~~~~F~~~~~~lkrGDiig~~G~pgrt~~gELSi~~~~~~lLspcLh~lP~~~~gLkD~E 205 (560)
T KOG1885|consen 126 YDLHGDGVKLQVMANAKKITSEEDFEQLHKFLKRGDIIGVSGYPGRTKSGELSIIPNEIILLSPCLHMLPHEHFGLKDKE 205 (560)
T ss_pred EEEecCCeEEEEEEehhhcCCHHHHHHHHhhhhccCEEeeecCCCcCCCceEEEeecchheecchhccCChhhcCCCcHH
Confidence 34555667899999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhHHH
Q psy11418 406 TRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYL 485 (553)
Q Consensus 406 ~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel~~ 485 (553)
+|+++|||||..|+..+..|++||+|+..||.||+++||+|||||||...+|||.+.||.|+++.++.++||++|||||+
T Consensus 206 tRyrqRylDlilN~~~r~~f~~RakII~~iRkfld~rgFlEVETPmmn~iaGGA~AkPFIT~hndldm~LylRiAPEL~l 285 (560)
T KOG1885|consen 206 TRYRKRYLDLILNPEVRDRFRIRAKIISYIRKFLDSRGFLEVETPMMNMIAGGATAKPFITHHNDLDMDLYLRIAPELYL 285 (560)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhcCceEecchhhccccCccccCceeecccccCcceeeeechHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh-ccCcceEe
Q psy11418 486 KST-HGSYKVTY 496 (553)
Q Consensus 486 k~l-~~~~~~~~ 496 (553)
|+| .|++++||
T Consensus 286 K~LvVGGldrVY 297 (560)
T KOG1885|consen 286 KMLVVGGLDRVY 297 (560)
T ss_pred HHHHhccHHHHH
Confidence 998 67777766
No 36
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=99.97 E-value=5.7e-32 Score=294.85 Aligned_cols=170 Identities=48% Similarity=0.806 Sum_probs=152.9
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhc-ccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLV-KIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKD 403 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~-~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~ 403 (553)
|-.+.++.+.+|++++.... .++++...+ .|+.||+|.|+|.+.++++|++||.+++|++|++|..++|.++++..+
T Consensus 73 F~~l~D~~g~iQ~~~~~~~~--~~~~~~~~~~~l~~gd~V~v~G~~~~t~~gelel~~~~i~ilsk~~~plP~k~~~~~d 150 (496)
T TIGR00499 73 FITLQDESGQIQLYVNKDDL--PEDFYEFDEYLLDLGDIIGVTGYPFKTKTGELSVHVTELQILTKALRPLPDKFHGLTD 150 (496)
T ss_pred EEEEEcCCccEEEEEECCcC--cHHHHHHHHhcCCCCCEEEEEEEEEECCCCcEEEEeeEEEEEecCCCCCCccccccCC
Confidence 45677788899999876432 234455544 489999999999999999999999999999999999899999998889
Q ss_pred hhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhH
Q psy11418 404 KETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPEL 483 (553)
Q Consensus 404 ~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel 483 (553)
.++|+++||||||.|+.++++|++||.++++||+||+++||+||+||+|++++|||++.||.|++++|+.++||+|||||
T Consensus 151 ~e~r~r~R~Ldl~~n~~~~~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t~~~~~~~~~yLriSpEL 230 (496)
T TIGR00499 151 QETRYRQRYLDLIVNPDSRQTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIPGGANARPFITHHNALDMDLYLRIAPEL 230 (496)
T ss_pred hhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEeecccCCCceEEecCHHH
Confidence 99999999999998999999999999999999999999999999999999888999999999998899999999999999
Q ss_pred HHHHh-ccCcceEe
Q psy11418 484 YLKST-HGSYKVTY 496 (553)
Q Consensus 484 ~~k~l-~~~~~~~~ 496 (553)
|+|+| +|+++++|
T Consensus 231 ylKrlivgG~~rVf 244 (496)
T TIGR00499 231 YLKRLIVGGFEKVY 244 (496)
T ss_pred HHHHHHhCCCCceE
Confidence 99998 57777755
No 37
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.4e-32 Score=287.21 Aligned_cols=171 Identities=49% Similarity=0.792 Sum_probs=158.8
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCCh
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK 404 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~ 404 (553)
|..+-++.+++|+.++... ...+.+..+.+.++.||+|.|+|.+.+|++|+++|.|++|++|+||..|+|.+++++++.
T Consensus 81 F~~i~d~~gkiQ~yi~k~~-~~~~~~~~~~~~~dlGDiigv~G~~~~T~~GelSv~v~~~~lLsKsL~pLPeK~hgL~D~ 159 (502)
T COG1190 81 FADLQDGSGKIQLYVNKDE-VGEEVFEALFKKLDLGDIIGVEGPLFKTKTGELSVSVEELRLLSKSLRPLPEKFHGLTDK 159 (502)
T ss_pred EEEEecCCceEEEEEeccc-cchhhHHHHHhccccCCEEeeeeeeeecCCCceEEEEEEEeeecccCCCCChhhcCCccH
Confidence 4566778889999998754 234556667889999999999999999999999999999999999999999999999999
Q ss_pred hhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhHH
Q psy11418 405 ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELY 484 (553)
Q Consensus 405 e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel~ 484 (553)
|.|+++|||||.+|+..+..|..||+++++||+||+++||+|||||+|+..+|||++.||.|++|+++.++||+||||||
T Consensus 160 E~RyR~RylDLi~N~e~r~~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF~ThhNald~dlyLRIApELy 239 (502)
T COG1190 160 EIRYRQRYLDLIVNPESRQTFIKRSKIIRAIREFLDDRGFLEVETPMLQPIPGGAAARPFITHHNALDMDLYLRIAPELY 239 (502)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCeEeccccccccCCCcccccceeeecccCCceEEeeccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh-ccCcceEe
Q psy11418 485 LKST-HGSYKVTY 496 (553)
Q Consensus 485 ~k~l-~~~~~~~~ 496 (553)
+|++ .|++.+||
T Consensus 240 LKRliVGG~erVf 252 (502)
T COG1190 240 LKRLIVGGFERVF 252 (502)
T ss_pred HHHHHhcCchhhe
Confidence 9998 67776655
No 38
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=99.97 E-value=3.4e-31 Score=285.82 Aligned_cols=216 Identities=23% Similarity=0.361 Sum_probs=175.9
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCC--CceeEEeeeEEEEeccCCCCCccccC--
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK--GELSIIPKKLTLLSPCLHMLPHMHFG-- 400 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~--g~~El~~~~i~vl~~~~~~~P~~~~~-- 400 (553)
|-.+-++.+.+|++++.... +++++.++.|+.||+|.|+|.+.+++. |++||.+++++||++|..++|+...+
T Consensus 36 Fl~LrD~~g~iQ~v~~~~~~---~~~~~~~~~L~~gs~V~v~G~v~~~~~~~~~~el~~~~i~vls~a~~~~P~~~~~~~ 112 (437)
T PRK05159 36 FLILRDRSGIIQVVVKKKVD---EELFETIKKLKRESVVSVTGTVKANPKAPGGVEVIPEEIEVLNKAEEPLPLDISGKV 112 (437)
T ss_pred EEEEEcCCcEEEEEEeCCcc---HHHHHHHhCCCCCcEEEEEEEEEcCCCCCCCEEEEEeEEEEEeCCCCCCCCCccccc
Confidence 45666777889998876432 567778899999999999999998874 89999999999999998889976553
Q ss_pred CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcceeeeeecCCCCCcceeEE
Q psy11418 401 VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPFVTHHNDLNMDLYMR 478 (553)
Q Consensus 401 ~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~~~~t~~~~~~~~~yL~ 478 (553)
..+.++++++|||||| ++.++++|++||.++++||+||.++||+||+||+|+.++ ||+.+||+. |||.++||+
T Consensus 113 ~~~~~~~~~~r~Ldlr-~~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~~~----~~~~~~~L~ 187 (437)
T PRK05159 113 LAELDTRLDNRFLDLR-RPRVRAIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGTEGGAELFPID----YFEKEAYLA 187 (437)
T ss_pred cCCHHHHhhCcceecC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCcccccCCCCCcceEeEE----ecCCceEec
Confidence 3468999999999998 999999999999999999999999999999999998775 777799987 899999999
Q ss_pred eChhHHHHHhc-cCcceE----------------ecCCCCCCCC-----C------------------------------
Q psy11418 479 IAPELYLKSTH-GSYKVT----------------YHPDGPESGS-----P------------------------------ 506 (553)
Q Consensus 479 ~Spel~~k~l~-~~~~~~----------------~~~e~~~~~~-----~------------------------------ 506 (553)
+|||||+|++. ++++++ |+|||+|+.. .
T Consensus 188 ~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~i~~~~~~~~~~~i~~ 267 (437)
T PRK05159 188 QSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELEL 267 (437)
T ss_pred CCHHHHHHHHHhcCCCcEEEEeceeeCCCCCCcccchhhheeeeeeeecccHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 99999999985 446554 4689987410 0
Q ss_pred cc--cC-CCCCceeeeHHHHHHHHh--CCCCCCCCCCChHHHHHHHh
Q psy11418 507 VE--ID-FTPPFRRLHMFPALEAAL--GVKLPNPTEFDTPEANKFLS 548 (553)
Q Consensus 507 ~~--~~-~~~~f~rit~~eA~~~~~--g~~~~~~~~~~~~~~~~~~~ 548 (553)
.. ++ +..||+||||.||++.+. |.++.++++++++....+++
T Consensus 268 ~~~~~~~~~~~f~rit~~eA~~~l~~~~~~~~~~~~~~~~~e~~l~~ 314 (437)
T PRK05159 268 LGIELPVPETPIPRITYDEAIEILKSKGNEISWGDDLDTEGERLLGE 314 (437)
T ss_pred hccCCCcCCCCceEeEHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHH
Confidence 01 11 347999999999998775 66666666666665555543
No 39
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=99.97 E-value=1.5e-31 Score=294.10 Aligned_cols=171 Identities=55% Similarity=0.914 Sum_probs=151.9
Q ss_pred HhcccccCCCccccccccccc-ChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQ-SEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKD 403 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~-~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~ 403 (553)
|..+.++.+.+|++++..... ..+.+....+.|+.||+|.|+|.+.++++|++||.++++++|++|..++|.++ +..+
T Consensus 153 F~~L~d~~g~iQv~~~~~~~~~~~~~~~~~~~~l~~Gd~V~V~G~~~~t~~gel~i~~~~i~llsk~l~~lP~~~-g~~d 231 (585)
T PTZ00417 153 FFDLVGDGAKIQVLANFAFHDHTKSNFAECYDKIRRGDIVGIVGFPGKSKKGELSIFPKETIILSPCLHMLPMKY-GLKD 231 (585)
T ss_pred EEEEEeCCeeEEEEEECCccCCCHHHHHHHHhcCCCCCEEEEEeEEcCCCCceEEEEEEEEEEEecCCCCCCccc-CCCC
Confidence 345556777899988753221 13344455688999999999999999999999999999999999999999887 7889
Q ss_pred hhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhH
Q psy11418 404 KETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPEL 483 (553)
Q Consensus 404 ~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel 483 (553)
.+.|+++||||||+|+..+++|++||+++++||+||+++||+||+||+|+++.|||+++||.|++++++.++||+|||||
T Consensus 232 ~e~r~r~RyLdL~~n~~~~~ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~GGA~a~PF~T~~n~~d~~lYLriSpEL 311 (585)
T PTZ00417 232 TEIRYRQRYLDLMINESTRSTFITRTKIINYLRNFLNDRGFIEVETPTMNLVAGGANARPFITHHNDLDLDLYLRIATEL 311 (585)
T ss_pred cccccccchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccCCcccceeEEecccCCCcceEEeecHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-ccCcceEe
Q psy11418 484 YLKST-HGSYKVTY 496 (553)
Q Consensus 484 ~~k~l-~~~~~~~~ 496 (553)
|+|+| +|+++++|
T Consensus 312 ~lKrLlvgG~~rVf 325 (585)
T PTZ00417 312 PLKMLIVGGIDKVY 325 (585)
T ss_pred HHHHHHHhCCCCEE
Confidence 99998 57777765
No 40
>PLN02502 lysyl-tRNA synthetase
Probab=99.97 E-value=1.4e-31 Score=293.40 Aligned_cols=172 Identities=56% Similarity=0.927 Sum_probs=154.2
Q ss_pred HhcccccCCCcccccccccccC-hHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQS-EEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKD 403 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~-~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~ 403 (553)
|..|.++.+.+|++++...... .+.+..+.+.|+.||+|.|+|.+.++++|++||.+++|+||++|..++|.++++..+
T Consensus 128 F~~LrD~~g~iQv~~~~~~~~~~~~~~~~~~~~l~~gdiV~V~G~~~~t~~gelel~~~~i~vLs~~l~plP~k~~~~~d 207 (553)
T PLN02502 128 FYDLRDDGGKIQLYADKKRLDLDEEEFEKLHSLVDRGDIVGVTGTPGKTKKGELSIFPTSFEVLTKCLLMLPDKYHGLTD 207 (553)
T ss_pred EEEEecCCccEEEEEECccccchhHHHHHHHhCCCCCcEEEEEEEEEecCCCCEEEEEeEEEEEeccCCCCCcccccccc
Confidence 4567778889999987654321 123556667899999999999999999999999999999999999999999999999
Q ss_pred hhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhH
Q psy11418 404 KETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPEL 483 (553)
Q Consensus 404 ~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel 483 (553)
.++|+++|||||++|+.++++|++||.|+++||+||+++||+||+||+|++++|||++.||.|++++|+.++||+|||||
T Consensus 208 ~e~r~r~RyLdl~~n~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~gGA~a~pF~t~~n~~~~~~yL~~Spel 287 (553)
T PLN02502 208 QETRYRQRYLDLIANPEVRDIFRTRAKIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFVTHHNDLNMDLYLRIATEL 287 (553)
T ss_pred hhhhccchhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeeccCCCccccceeeecccCCcceeeecCHHH
Confidence 99999999999988999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHHh-ccCcceEe
Q psy11418 484 YLKST-HGSYKVTY 496 (553)
Q Consensus 484 ~~k~l-~~~~~~~~ 496 (553)
|+|+| +++++++|
T Consensus 288 ~lK~L~v~g~~rVf 301 (553)
T PLN02502 288 HLKRLVVGGFERVY 301 (553)
T ss_pred HHHHHHHhccCCEE
Confidence 99985 57777655
No 41
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=99.97 E-value=3.7e-32 Score=280.39 Aligned_cols=121 Identities=32% Similarity=0.545 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceecccc-CCCCCcceeecc---CCCCcceeeeeCHHHHHHHHHHccCCcEEEEc
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHH---NDLNMDLYMRIAPELYLKMLVVGGLDRVYEVG 286 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~-gga~a~~F~t~~---~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~ 286 (553)
+++||.|++++|+||.++||+||+||+|++++ ++++++||.|++ +.+++++||++|||||+|+++++|++|||+||
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfeig 80 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQIC 80 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEEc
Confidence 47899999999999999999999999999774 556789999864 45678999999999999999999999999999
Q ss_pred cccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhccccc
Q psy11418 287 RQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKED 331 (553)
Q Consensus 287 ~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~ 331 (553)
||||||+++.||||||||||||++|+|++|+|+++|++++++++.
T Consensus 81 p~FRaE~~~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~ 125 (304)
T TIGR00462 81 KVFRNGERGRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGD 125 (304)
T ss_pred CceeCCCCCCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999765
No 42
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=99.97 E-value=6.3e-31 Score=282.74 Aligned_cols=219 Identities=21% Similarity=0.343 Sum_probs=178.4
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC--CCceeEEeeeEEEEeccCCCCCccccCC-
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSIIPKKLTLLSPCLHMLPHMHFGV- 401 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~--~g~~El~~~~i~vl~~~~~~~P~~~~~~- 401 (553)
|..+.++.+.+|++++... ..++++..+..|+.||+|.|+|.+++++ +|++||.+++++||++|..++|++..+.
T Consensus 32 Fi~lrd~~g~iQ~v~~~~~--~~~~~~~~~~~l~~~s~v~v~G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~ 109 (428)
T TIGR00458 32 FVLLRDREGLIQITAPAKK--VSKNLFKWAKKLNLESVVAVRGIVKIKEKAPGGFEIIPTKIEVINEAKEPLPLDPTEKV 109 (428)
T ss_pred EEEEEeCCeeEEEEEECCc--CCHHHHHHHhCCCCCcEEEEEEEEEecCCCCCcEEEEEeEEEEEecCCCCCCCCccccC
Confidence 4567778888999887543 2356777889999999999999998766 5899999999999999988899877653
Q ss_pred -CChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcceeeeeecCCCCCcceeEE
Q psy11418 402 -KDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPFVTHHNDLNMDLYMR 478 (553)
Q Consensus 402 -~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~~~~t~~~~~~~~~yL~ 478 (553)
.+.++++++|||||| ++.++++|++||.++++||+||.++||+||+||+|++++ ||+.+||+. ||+.++||+
T Consensus 110 ~~~~~~r~~~R~ldlr-~~~~~~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~v~----~~~~~~yL~ 184 (428)
T TIGR00458 110 PAELDTRLDYRFLDLR-RPTVQAIFRIRSGVLESVREFLAEEGFIEVHTPKLVASATEGGTELFPIT----YFEREAFLG 184 (428)
T ss_pred CCCHHHHhhhhhhhhC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCCCCCcceeeeE----ecCCcEEEC
Confidence 467899999999999 999999999999999999999999999999999999887 677788876 899999999
Q ss_pred eChhHHHHHh-ccCcceEe----------------cCCCCCCCC----------------------------------Cc
Q psy11418 479 IAPELYLKST-HGSYKVTY----------------HPDGPESGS----------------------------------PV 507 (553)
Q Consensus 479 ~Spel~~k~l-~~~~~~~~----------------~~e~~~~~~----------------------------------~~ 507 (553)
+|||||+|++ +++++++| +|||+|+.. ..
T Consensus 185 ~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~dlm~~~e~li~~i~~~~~~~~~~~~~~~ 264 (428)
T TIGR00458 185 QSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEELVVRVFEDVPERCAHQLETL 264 (428)
T ss_pred cCHHHHHHHHHhcccCcEEEEecccccCCCCCccchheeeEeeeeeccCCHHHHHHHHHHHHHHHHHHHHhcchhhhhhc
Confidence 9999999986 56666544 688887400 01
Q ss_pred ccCC---CCCceeeeHHHHHHHH--hCCCCCCCCCCChHHHHHHHhCC
Q psy11418 508 EIDF---TPPFRRLHMFPALEAA--LGVKLPNPTEFDTPEANKFLSDP 550 (553)
Q Consensus 508 ~~~~---~~~f~rit~~eA~~~~--~g~~~~~~~~~~~~~~~~~~~~~ 550 (553)
..++ ..||+||||.||++.+ .|+++.+..+++++.+..+.+.+
T Consensus 265 ~~~~~~~~~pf~rity~eA~~~l~~~g~~~~~~~~l~~~~E~~l~~~~ 312 (428)
T TIGR00458 265 EFKLEKPEGKFVRLTYDEAIEMANAKGVEIGWGEDLSTEAEKALGEEM 312 (428)
T ss_pred ccccccCCCCceEEEHHHHHHHHHHcCCCCCCccccchHHHHHHHHHh
Confidence 1222 3589999999999744 47777776667777766666544
No 43
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=3e-31 Score=289.15 Aligned_cols=170 Identities=48% Similarity=0.782 Sum_probs=153.7
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCCh
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK 404 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~ 404 (553)
|-.+-++.+.+|++++.... .++.+..++.|+.||+|.|+|.+.++++|++||.+++++||++|..++|.++++..+.
T Consensus 74 Fi~lrD~~g~iQ~v~~~~~~--~~~~~~~~~~l~~g~~v~v~G~v~~t~~ge~el~~~~~~vls~~~~plP~~~~~~~~~ 151 (491)
T PRK00484 74 FATLQDGSGRIQLYVSKDDV--GEEALEAFKKLDLGDIIGVEGTLFKTKTGELSVKATELTLLTKSLRPLPDKFHGLTDV 151 (491)
T ss_pred EEEEEcCCccEEEEEECCcC--CHHHHHHHhcCCCCCEEEEEEEEEEcCCCcEEEEEeEEEEEeccCCCCCcccccccch
Confidence 56677788899999875432 2445566677999999999999999999999999999999999998999998888899
Q ss_pred hhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhHH
Q psy11418 405 ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELY 484 (553)
Q Consensus 405 e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel~ 484 (553)
++|+++||||||+++.++++|++||.++++||+||+++||+||+||+|++++|||++.||.|+.++|+.++||++|||||
T Consensus 152 ~~r~r~R~lDl~~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~ 231 (491)
T PRK00484 152 ETRYRQRYVDLIVNPESRETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFITHHNALDIDLYLRIAPELY 231 (491)
T ss_pred hhhccceeeehhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCceeccCCCccceeeeeccccCCCceEeccCHHHH
Confidence 99999999999989999999999999999999999999999999999998889999999999989999999999999999
Q ss_pred HHHh-ccCcceEe
Q psy11418 485 LKST-HGSYKVTY 496 (553)
Q Consensus 485 ~k~l-~~~~~~~~ 496 (553)
+|++ +++++++|
T Consensus 232 lk~l~v~g~~rVf 244 (491)
T PRK00484 232 LKRLIVGGFERVY 244 (491)
T ss_pred HHHHHhccCCcEE
Confidence 9997 57777766
No 44
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=99.97 E-value=1.4e-30 Score=286.39 Aligned_cols=196 Identities=22% Similarity=0.384 Sum_probs=159.6
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEccccc---------CCCCceeEEeeeEEEEeccCCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK---------TKKGELSIIPKKLTLLSPCLHMLP 395 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~---------~~~g~~El~~~~i~vl~~~~~~~P 395 (553)
|..+.++.+.+|++++.. ++.+..++.|+.||+|.|+|++.+ +.+|++||.++++++|++|. .+|
T Consensus 35 Fi~LrD~sg~iQvv~~~~-----~~~~~~~~~L~~esvV~V~G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~-~~P 108 (583)
T TIGR00459 35 FIDLRDRSGIVQVVCDPD-----ADALKLAKGLRNEDVVQVKGKVSARPEGNINRNLDTGEIEILAESITLLNKSK-TPP 108 (583)
T ss_pred EEEEEeCCccEEEEEeCC-----HHHHHHHhcCCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCC
Confidence 567778888999998752 455677899999999999999975 34889999999999999986 466
Q ss_pred cccc-CCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcceeeeeecCCCCCc
Q psy11418 396 HMHF-GVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHHNDLNM 473 (553)
Q Consensus 396 ~~~~-~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~~~~~~t~~~~~~~ 473 (553)
+... ...++++|+++|||||| ++.++++|++||.++++||+||+++||+||+||+|++++ +||.- |.++..+++.
T Consensus 109 ~~~~~~~~~~~~Rl~~RyLDLR-~~~~~~~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~eGar~--f~vp~~~~~~ 185 (583)
T TIGR00459 109 LIIEKTDAEEEVRLKYRYLDLR-RPEMQQRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTPEGARD--YLVPSRVHKG 185 (583)
T ss_pred CcccccccchhhhcccceEEcC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeccCCCCCCcc--eeeeeecCCC
Confidence 6553 34578999999999998 999999999999999999999999999999999999877 88763 2222224455
Q ss_pred cee-EEeChhHHHHHh-ccCcceEe---------------cCCCCCCC------------------------CCcccCCC
Q psy11418 474 DLY-MRIAPELYLKST-HGSYKVTY---------------HPDGPESG------------------------SPVEIDFT 512 (553)
Q Consensus 474 ~~y-L~~Spel~~k~l-~~~~~~~~---------------~~e~~~~~------------------------~~~~~~~~ 512 (553)
++| |++|||||+|++ +++++++| +|||+|+. ....+++.
T Consensus 186 ~~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~E~~~t~r~pEFT~le~E~af~d~~dvm~~~E~li~~v~~~v~~~~~~ 265 (583)
T TIGR00459 186 EFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQPEFTQIDMEMSFMTQEDVMELIEKLVSHVFLEVKGIDLK 265 (583)
T ss_pred ceeecCCCHHHHHHHHHhcccCcEEEEcceeeCCCCCCCCCcccCcceeeecCCCHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 555 999999999985 57777655 89999751 11235778
Q ss_pred CCceeeeHHHHHHHHhC
Q psy11418 513 PPFRRLHMFPALEAALG 529 (553)
Q Consensus 513 ~~f~rit~~eA~~~~~g 529 (553)
.||+||||.|||++|+.
T Consensus 266 ~pf~r~ty~ea~~~yGs 282 (583)
T TIGR00459 266 KPFPVMTYAEAMERYGS 282 (583)
T ss_pred CCceEEEHHHHHHHHCC
Confidence 89999999999999943
No 45
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.9e-30 Score=275.17 Aligned_cols=215 Identities=21% Similarity=0.361 Sum_probs=177.0
Q ss_pred ceeeeEeccCCHHHHHHHHHHHHhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccC---------C
Q psy11418 303 TTCEFYMAYADYNDLMHLTEDLISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---------K 373 (553)
Q Consensus 303 t~lE~e~a~~~~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~---------~ 373 (553)
|-+.|....-|+-.++ |..+-+..+.+||+|++. ..++.+..++.|+.|++|.|+|+|... +
T Consensus 19 ~L~GWV~r~Rd~Ggli------FiDLRDr~GivQvv~~~~---~~~~~~~~a~~lr~E~vi~V~G~V~~R~e~~~N~~l~ 89 (585)
T COG0173 19 TLSGWVHRRRDHGGLI------FIDLRDREGIVQVVFDPE---DSPEAFEVASRLRNEFVIQVTGTVRARPEGTINPNLP 89 (585)
T ss_pred EEEeeeeeccccCCeE------EEEcccCCCeEEEEECCc---cCHHHHHHHHhcCceEEEEEEEEEEecCccccCCCCC
Confidence 4445555444544443 678889999999999974 346789999999999999999988543 3
Q ss_pred CCceeEEeeeEEEEeccCCCCCccccC--CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCce
Q psy11418 374 KGELSIIPKKLTLLSPCLHMLPHMHFG--VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPM 451 (553)
Q Consensus 374 ~g~~El~~~~i~vl~~~~~~~P~~~~~--~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPi 451 (553)
+|++||.+++++|||+|.. +|+...+ ..++++|++||||||| +|.++.+|++||+++.++|+||+++||+|||||+
T Consensus 90 TGeiEv~a~~i~vln~s~~-lPf~i~d~~~~~Ee~RLkYRyLDLR-R~~m~~~l~lR~kv~~~iR~~ld~~gF~EiETPi 167 (585)
T COG0173 90 TGEIEVLAEEIEVLNASKT-LPFQIEDETNASEEIRLKYRYLDLR-RPEMQKNLKLRSKVTKAIRNFLDDQGFLEIETPI 167 (585)
T ss_pred cceEEEEeeeEEEEecCCC-CCcCCCCCCCcchhhhhhhhhhhhc-CHHHHHHHHHHHHHHHHHHHHHhhcCCeEeecCc
Confidence 8999999999999998864 6666655 4688999999999999 9999999999999999999999999999999999
Q ss_pred eeccC-CCcc--eeeeeecCCCCCcceeEEeChhHHHHHh-ccCcceEe---------------cCCCCCC---------
Q psy11418 452 MNMIA-GGAT--AKPFVTHHNDLNMDLYMRIAPELYLKST-HGSYKVTY---------------HPDGPES--------- 503 (553)
Q Consensus 452 L~~~~-~ga~--~~~~~t~~~~~~~~~yL~~Spel~~k~l-~~~~~~~~---------------~~e~~~~--------- 503 (553)
|++|+ +||+ ++|.+++...| +-|-||||+|+|-| .++|++.| .|||+-+
T Consensus 168 LtkSTPEGARDfLVPSRv~~G~F---YALPQSPQlfKQLLMvsGfdRYyQIarCFRDEDlRaDRQPEFTQiD~EmSF~~~ 244 (585)
T COG0173 168 LTKSTPEGARDFLVPSRVHPGKF---YALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDLEMSFVDE 244 (585)
T ss_pred cccCCCccccccccccccCCCce---eecCCCHHHHHHHHHHhcccceeeeeeeecccccccccCCcceeEeEEeecCCH
Confidence 99999 9999 88998874333 67999999999986 56676644 7888732
Q ss_pred ---------------CCCcccCCCCCceeeeHHHHHHHHhCCC
Q psy11418 504 ---------------GSPVEIDFTPPFRRLHMFPALEAALGVK 531 (553)
Q Consensus 504 ---------------~~~~~~~~~~~f~rit~~eA~~~~~g~~ 531 (553)
.....+++..||+||||.|||++|+-=+
T Consensus 245 edv~~~~E~l~~~vf~~~~~i~l~~pFprmtY~eAm~~YGSDK 287 (585)
T COG0173 245 EDVMELIEKLLRYVFKEVKGIELKTPFPRMTYAEAMRRYGSDK 287 (585)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCCCcccccHHHHHHHhCCCC
Confidence 1233477788999999999999997443
No 46
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=99.97 E-value=5.5e-30 Score=283.65 Aligned_cols=199 Identities=22% Similarity=0.378 Sum_probs=162.3
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC---------CCceeEEeeeEEEEeccCCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK---------KGELSIIPKKLTLLSPCLHMLP 395 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~---------~g~~El~~~~i~vl~~~~~~~P 395 (553)
|..+-++.+.+|++++. . ++.+..++.|+.||+|.|+|+|.+++ +|++||.+++++||++|. ++|
T Consensus 37 Fi~LrD~~g~iQ~v~~~----~-~~~~~~~~~l~~es~V~V~G~v~~~~~~~~n~~~~~g~~El~~~~i~il~~a~-~lP 110 (588)
T PRK00476 37 FIDLRDREGIVQVVFDP----D-AEAFEVAESLRSEYVIQVTGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSK-TLP 110 (588)
T ss_pred EEEEEeCCceEEEEEeC----C-HHHHHHHhCCCCCCEEEEEEEEEecCCcccCccCCCCcEEEEEeEEEEEecCC-CCC
Confidence 45667778889998874 1 45667889999999999999998754 788999999999999998 788
Q ss_pred ccccC--CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcceeeeeecCC-CC
Q psy11418 396 HMHFG--VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHHN-DL 471 (553)
Q Consensus 396 ~~~~~--~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~~~~~~t~~~-~~ 471 (553)
+...+ ..++++|+++|||||| ++.++++|++||.+++++|+||+++||+||+||+|++++ +||+- |.+... +.
T Consensus 111 ~~~~~~~~~~~~~Rl~~R~LdlR-~~~~~~~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~ega~~--f~v~~~~~~ 187 (588)
T PRK00476 111 FPIDDEEDVSEELRLKYRYLDLR-RPEMQKNLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTPEGARD--YLVPSRVHP 187 (588)
T ss_pred CcccccccCChhhhhhcceEeec-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCCCCCcc--ceecccccC
Confidence 77643 3578999999999999 999999999999999999999999999999999999887 77753 222221 45
Q ss_pred CcceeEEeChhHHHHHh-ccCcceEe---------------cCCCCCCCC------------------------CcccCC
Q psy11418 472 NMDLYMRIAPELYLKST-HGSYKVTY---------------HPDGPESGS------------------------PVEIDF 511 (553)
Q Consensus 472 ~~~~yL~~Spel~~k~l-~~~~~~~~---------------~~e~~~~~~------------------------~~~~~~ 511 (553)
+..+||++|||+|+|++ +++++++| +|||+|+.. ....++
T Consensus 188 ~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR~E~~~~~r~~EFt~le~e~af~~~~dvm~~~E~li~~i~~~~~~~~~ 267 (588)
T PRK00476 188 GKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDIEMSFVTQEDVMALMEGLIRHVFKEVLGVDL 267 (588)
T ss_pred CceeecCCCHHHHHHHHHhcccCceEEEeceeecCCCCCCcCcccccceeeecCCCHHHHHHHHHHHHHHHHHHHhCccC
Confidence 66778999999999985 57777655 789987510 112356
Q ss_pred CCCceeeeHHHHHHHHhCCCCC
Q psy11418 512 TPPFRRLHMFPALEAALGVKLP 533 (553)
Q Consensus 512 ~~~f~rit~~eA~~~~~g~~~~ 533 (553)
..||+||||.|||++| |.|-+
T Consensus 268 ~~pf~r~ty~ea~~~y-g~dkP 288 (588)
T PRK00476 268 PTPFPRMTYAEAMRRY-GSDKP 288 (588)
T ss_pred CCCceEEEHHHHHHHH-CCCCC
Confidence 7899999999999999 56544
No 47
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=99.97 E-value=5.6e-30 Score=282.67 Aligned_cols=172 Identities=33% Similarity=0.585 Sum_probs=147.0
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccC--CCC--Cc--cc
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCL--HML--PH--MH 398 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~--~~~--P~--~~ 398 (553)
|..+-++.+++|++++.......+.+....+.|+.||+|.|+|.+.++++|++||.++++++|+++. .+. |. .+
T Consensus 127 F~~LrD~~G~IQvv~~~~~~~~~~~~~~~~~~l~~gdiV~V~G~v~~t~~GeleI~~~~i~lLska~~~~~~~~p~~~k~ 206 (659)
T PTZ00385 127 FVTIRSNGNELQVVGQVGEHFTREDLKKLKVSLRVGDIIGADGVPCRMQRGELSVAASRMLILSPYVCTDQVVCPNLRGF 206 (659)
T ss_pred EEEEEECCceEEEEEECCccCCHHHHHHHHhCCCCCCEEEEEEEEEecCCceEEEEeeEEEEechhhhccccCCCCCccc
Confidence 4556678889999987643222334444556899999999999999999999999999999999964 221 22 34
Q ss_pred cCCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEE
Q psy11418 399 FGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMR 478 (553)
Q Consensus 399 ~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~ 478 (553)
++..+.++|+++||||||+|+.++++|++||+++++||+||+++||+||+||+|+++++|+++.||.|++++|+.++||+
T Consensus 207 ~~~~d~e~R~r~RyLDL~~n~~~~~ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~t~~n~~~~~~yL~ 286 (659)
T PTZ00385 207 TVLQDNDVKYRYRFTDMMTNPCVIETIKKRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFVTHHNANAMDLFLR 286 (659)
T ss_pred cccCChhhhcccceeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceEeecccCCCCEEec
Confidence 56779999999999999889999999999999999999999999999999999988889999999999999999999999
Q ss_pred eChhHHHHHh-ccCcceEe
Q psy11418 479 IAPELYLKST-HGSYKVTY 496 (553)
Q Consensus 479 ~Spel~~k~l-~~~~~~~~ 496 (553)
||||||+|+| +++++++|
T Consensus 287 ~SPELylKrLivgG~erVy 305 (659)
T PTZ00385 287 VAPELHLKQCIVGGMERIY 305 (659)
T ss_pred CChHHHHHHHhhcccCCEE
Confidence 9999999987 47777755
No 48
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=99.96 E-value=4.3e-30 Score=301.05 Aligned_cols=171 Identities=39% Similarity=0.641 Sum_probs=154.7
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCCh
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK 404 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~ 404 (553)
|-.+-++.+.+|++++.... ..+.+..+.+.|+.||+|.|+|++.++++|++||.+++|+|+++|..++|.++++..++
T Consensus 671 F~~lrD~~g~iQ~v~~~~~~-~~~~~~~~~~~l~~gd~V~v~G~v~~t~~ge~ei~~~~i~ll~k~~~plP~k~~~~~d~ 749 (1094)
T PRK02983 671 FADLRDWSGELQVLLDASRL-EQGSLADFRAAVDLGDLVEVTGTMGTSRNGTLSLLVTSWRLAGKCLRPLPDKWKGLTDP 749 (1094)
T ss_pred EEEEEeCCeeEEEEEECCcc-chhhHHHHHhcCCCCCEEEEEEEEEEcCCCCEEEEEeEEEEEeccCcCCCCccccCCCh
Confidence 55677888899999876433 23345556678999999999999999999999999999999999999999999999999
Q ss_pred hhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhHH
Q psy11418 405 ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELY 484 (553)
Q Consensus 405 e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel~ 484 (553)
++|+++||||||+|+.++++|++||+++++||+||+++||+|||||+|+++.|||++.||.|++++|+.++||+||||||
T Consensus 750 e~R~r~R~lDL~~n~~~~~~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~gGa~a~pF~t~~~~~~~~~yLriSPELy 829 (1094)
T PRK02983 750 EARVRQRYLDLAVNPEARDLLRARSAVVRAVRETLVARGFLEVETPILQQVHGGANARPFVTHINAYDMDLYLRIAPELY 829 (1094)
T ss_pred hhcchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCEeeccCCCcccceeEeeecCCCccchhhcChHHH
Confidence 99999999999989999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHh-ccCcceEe
Q psy11418 485 LKST-HGSYKVTY 496 (553)
Q Consensus 485 ~k~l-~~~~~~~~ 496 (553)
+|+| .++++++|
T Consensus 830 lKrLivgG~erVF 842 (1094)
T PRK02983 830 LKRLCVGGVERVF 842 (1094)
T ss_pred HHHHHhcccCceE
Confidence 9996 47777755
No 49
>PLN02903 aminoacyl-tRNA ligase
Probab=99.96 E-value=1.2e-29 Score=280.15 Aligned_cols=197 Identities=20% Similarity=0.337 Sum_probs=160.3
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccC---------CCCceeEEeeeEEEEeccCCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---------KKGELSIIPKKLTLLSPCLHMLP 395 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~---------~~g~~El~~~~i~vl~~~~~~~P 395 (553)
|..+-++.+.+|++++... .+++...++.|+.||+|.|+|+|... ++|++||.+++++||++|..++|
T Consensus 92 FidLRD~~G~iQvV~~~~~---~~~~~~~~~~L~~esvV~V~G~V~~r~~~~~n~~~~tGeiEl~~~~i~VL~~a~~~lP 168 (652)
T PLN02903 92 FLDVRDHTGIVQVVTLPDE---FPEAHRTANRLRNEYVVAVEGTVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLP 168 (652)
T ss_pred EEEEEcCCccEEEEEeCCc---cHHHHHHHhcCCCCCEEEEEEEEEeCCCcCcCCCCCCCCEEEEEeEEEEEecCCCCCC
Confidence 5677788889999987532 24567788999999999999999753 36889999999999999977777
Q ss_pred ccccC------CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHh-CCcEEeeCceeeccC-CCcc--eeeee
Q psy11418 396 HMHFG------VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDS-LGFLEVETPMMNMIA-GGAT--AKPFV 465 (553)
Q Consensus 396 ~~~~~------~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~-~~F~EV~TPiL~~~~-~ga~--~~~~~ 465 (553)
+...+ ..++++|+++|||||| ++.++++|++||.++++||+||.+ +||+||+||+|++++ +||. +.|..
T Consensus 169 f~i~~~~~~~~~~~ee~Rl~~RyLDLR-~~~~q~~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~eGardf~v~~~ 247 (652)
T PLN02903 169 FLVTTADEQKDSIKEEVRLRYRVLDLR-RPQMNANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSR 247 (652)
T ss_pred ccccccccccccCChhhhhccceeecC-CHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCCCCCcccEEeee
Confidence 76543 3578999999999999 999999999999999999999997 999999999999888 7776 33332
Q ss_pred ecCCCCCcceeEEeChhHHHHHh-ccCcceEe---------------cCCCCCCCC------------------------
Q psy11418 466 THHNDLNMDLYMRIAPELYLKST-HGSYKVTY---------------HPDGPESGS------------------------ 505 (553)
Q Consensus 466 t~~~~~~~~~yL~~Spel~~k~l-~~~~~~~~---------------~~e~~~~~~------------------------ 505 (553)
. +.+..+||++|||||+|++ +++++++| +|||+|+..
T Consensus 248 ~---~~g~~y~L~qSPQlykQ~Lm~~G~~RvFqIa~~FR~E~~~t~RhpEFTqLE~E~sf~d~~dvm~~~E~li~~v~~~ 324 (652)
T PLN02903 248 V---QPGTFYALPQSPQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQPEFTQLDMELAFTPLEDMLKLNEDLIRQVFKE 324 (652)
T ss_pred c---CCCcccccCCCHHHHHHHHHhccCCcEEEEehhhccCCCCCCcccceeeeeeeecCCCHHHHHHHHHHHHHHHHHH
Confidence 1 1255678999999999985 57777655 789987510
Q ss_pred CcccCCCCCceeeeHHHHHHHHh
Q psy11418 506 PVEIDFTPPFRRLHMFPALEAAL 528 (553)
Q Consensus 506 ~~~~~~~~~f~rit~~eA~~~~~ 528 (553)
...+++..||+||||.|||++|+
T Consensus 325 ~~~~~~~~PF~rity~eA~~~yg 347 (652)
T PLN02903 325 IKGVQLPNPFPRLTYAEAMSKYG 347 (652)
T ss_pred HhCCCCCCCceEEEHHHHHHHHc
Confidence 11245667999999999999986
No 50
>PLN02532 asparagine-tRNA synthetase
Probab=99.96 E-value=2.2e-29 Score=276.90 Aligned_cols=216 Identities=12% Similarity=0.069 Sum_probs=169.4
Q ss_pred HhcccccCCC--cccccccccccChHHHHHhhcccCCccEEEEEcccccCC----CCceeEEeeeEEEEeccC-CCCCcc
Q psy11418 325 ISGRKEDRNR--PCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK----KGELSIIPKKLTLLSPCL-HMLPHM 397 (553)
Q Consensus 325 i~~~~~~~~~--iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~----~g~~El~~~~i~vl~~~~-~~~P~~ 397 (553)
|..|-++.+. +||+++.... ...+.|+.|++|.|+|+|+.+. +|++||.+++++||+++. .++|+.
T Consensus 137 FI~LrDGSg~~~lQvVv~~~~~-------~~~~~L~~Es~V~V~G~V~~~~~~~~~g~iEl~v~~i~VLg~a~~~p~Pi~ 209 (633)
T PLN02532 137 YLLISDGSCVASLQVVVDSALA-------PLTQLMATGTCILAEGVLKLPLPAQGKHVIELEVEKILHIGTVDPEKYPLS 209 (633)
T ss_pred EEEEECCCCccceEEEEeCCcc-------cHhhcCCCceEEEEEEEEEecCCCCCCCcEEEEeeEEEEEecCCCCCCccc
Confidence 4556667676 8888864211 1126899999999999998762 789999999999999875 578877
Q ss_pred ccCCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcc-eeeeeec--------
Q psy11418 398 HFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGAT-AKPFVTH-------- 467 (553)
Q Consensus 398 ~~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~-~~~~~t~-------- 467 (553)
... ...|+++++||||+| ++.++++|++||.++++||+||+++||+||+||+|++++ +||. +|++.|.
T Consensus 210 ~k~-~~~E~LR~~RhLdLR-t~~~~ailRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s~~EGa~elF~v~t~~~~~~~~~ 287 (633)
T PLN02532 210 KKR-LPLDMLRDFSHFRPR-TTTVASVTRVRSALTHATHTFFQDHGFLYVQVPIITTTDATGFGEMFRVTTLLGKSDDKE 287 (633)
T ss_pred ccc-CCHHHHhhCcceecC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCccccccceecccccccccc
Confidence 555 456777799999999 999999999999999999999999999999999999999 5544 8777652
Q ss_pred -----------------------------------------------------------------------------CCC
Q psy11418 468 -----------------------------------------------------------------------------HND 470 (553)
Q Consensus 468 -----------------------------------------------------------------------------~~~ 470 (553)
.+|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~dy 367 (633)
T PLN02532 288 EKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTNQLASQLEAKEKLKTGTSVKADKLSFSKDF 367 (633)
T ss_pred ccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 248
Q ss_pred CCcceeEEeChhHHHHHhccCcceEe----------------cCCCCCC----------------------------CC-
Q psy11418 471 LNMDLYMRIAPELYLKSTHGSYKVTY----------------HPDGPES----------------------------GS- 505 (553)
Q Consensus 471 ~~~~~yL~~Spel~~k~l~~~~~~~~----------------~~e~~~~----------------------------~~- 505 (553)
||.++||++|||||+|+++++++++| .+||+|+ ..
T Consensus 368 Fg~~ayLtqS~QLylE~~~~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~d~~dvM~l~E~lI~~v~k~v~~~~ 447 (633)
T PLN02532 368 FSRPTYLTVSGRLHLESYACALGNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSELEDAMNCAEDYFKFLCKWVLENC 447 (633)
T ss_pred CCCCeeeccCHHHHHHHHHHhcCceEEEccceecCCCCCCcccccccceeeeehhcCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999988887765 6677753 00
Q ss_pred --C---------------cccCCCCCceeeeHHHHHHHH---hCC----CCCCCCCCChHHHHHHHhC
Q psy11418 506 --P---------------VEIDFTPPFRRLHMFPALEAA---LGV----KLPNPTEFDTPEANKFLSD 549 (553)
Q Consensus 506 --~---------------~~~~~~~~f~rit~~eA~~~~---~g~----~~~~~~~~~~~~~~~~~~~ 549 (553)
. ....+.+||+||||.||++.+ .|. ++.++.+++++.+..+++.
T Consensus 448 ~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~~~~e~~~~~g~dL~~e~Er~L~~~ 515 (633)
T PLN02532 448 SEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFETKPEWGIALTTEHLSYLADE 515 (633)
T ss_pred hhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcCCCcccccccCCccChHHHHHHHHH
Confidence 0 011345799999999999733 332 2456667888888877765
No 51
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=99.96 E-value=2e-29 Score=280.89 Aligned_cols=200 Identities=20% Similarity=0.349 Sum_probs=160.4
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccC---------CCCceeEEeeeEEEEeccCCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---------KKGELSIIPKKLTLLSPCLHMLP 395 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~---------~~g~~El~~~~i~vl~~~~~~~P 395 (553)
|..+.++.+.+|++++... ..++++..+++|+.||+|.|+|.|.+. ++|++||.+++++||++|. ++|
T Consensus 38 FidLRD~~G~iQvV~~~~~--~~~~~~~~~~~L~~EsvV~V~G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~-~lP 114 (706)
T PRK12820 38 FIHLRDRNGFIQAVFSPEA--APADVYELAASLRAEFCVALQGEVQKRLEETENPHIETGDIEVFVRELSILAASE-ALP 114 (706)
T ss_pred EEEEEeCCccEEEEEeCCc--CCHHHHHHHhcCCCCCEEEEEeEEeccCccccCCCCCCCcEEEEeeEEEEEecCC-CCC
Confidence 5677788889999987543 235677888999999999999999763 2589999999999999986 344
Q ss_pred ccccC-------------CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcc-
Q psy11418 396 HMHFG-------------VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGAT- 460 (553)
Q Consensus 396 ~~~~~-------------~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~- 460 (553)
+...+ ..++++|+++|||||| ++.++++|++||.++++||+||+++||+||+||+|++++ +||.
T Consensus 115 ~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR-~~~~~~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~eGAr~ 193 (706)
T PRK12820 115 FAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIR-RPAMQDHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTPEGARD 193 (706)
T ss_pred CCCcccccccccccccccccCHhhhhhCceeecC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCCCcc
Confidence 43322 2468999999999999 999999999999999999999999999999999999887 7776
Q ss_pred -eeeeeecCCCCCcce-eEEeChhHHHHHh-ccCcceEe---------------cCCCCCCCC-----------------
Q psy11418 461 -AKPFVTHHNDLNMDL-YMRIAPELYLKST-HGSYKVTY---------------HPDGPESGS----------------- 505 (553)
Q Consensus 461 -~~~~~t~~~~~~~~~-yL~~Spel~~k~l-~~~~~~~~---------------~~e~~~~~~----------------- 505 (553)
++|.. +++.++ +|++|||||+|++ +++++++| +|||+|+..
T Consensus 194 ~~~p~~----~~~~~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR~E~~~t~r~pEFT~LE~E~af~d~~dvm~l~E~l 269 (706)
T PRK12820 194 YLVPSR----IHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQPEFTQLDIEASFIDEEFIFELIEEL 269 (706)
T ss_pred eEEeee----cCCCcceecCCCHHHHHHHHHhccCCcEEEEechhcCCCCCCCcCccccccceeeccCCHHHHHHHHHHH
Confidence 44544 344444 4999999999996 57777655 789987510
Q ss_pred ------CcccCCCCCceeeeHHHHHHHHhCCCCC
Q psy11418 506 ------PVEIDFTPPFRRLHMFPALEAALGVKLP 533 (553)
Q Consensus 506 ------~~~~~~~~~f~rit~~eA~~~~~g~~~~ 533 (553)
...+++..||+||||.|||++| |.|=+
T Consensus 270 i~~v~~~~~~~~~~pf~r~ty~eA~~~y-G~DKP 302 (706)
T PRK12820 270 TARMFAIGGIALPRPFPRMPYAEAMDTT-GSDRP 302 (706)
T ss_pred HHHHHHhcCcCCCCCceEEEHHHHHHHh-CCCCC
Confidence 1134666899999999999999 55533
No 52
>PLN02850 aspartate-tRNA ligase
Probab=99.96 E-value=3.8e-29 Score=273.97 Aligned_cols=217 Identities=18% Similarity=0.241 Sum_probs=168.9
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEccccc------CCCCceeEEeeeEEEEeccCCCCCccc
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK------TKKGELSIIPKKLTLLSPCLHMLPHMH 398 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~------~~~g~~El~~~~i~vl~~~~~~~P~~~ 398 (553)
|-.+-++.+.+|+++........++++.++.+|+.||+|.|+|+|++ +.++++||.+++|.||++|..++|++.
T Consensus 101 Fl~Lrd~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~a~~~lP~~~ 180 (530)
T PLN02850 101 FLVLRQSGFTVQCVVFVSEVTVSKGMVKYAKQLSRESVVDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKALATLPFNV 180 (530)
T ss_pred EEEEEeCCcCEEEEEECCccccCHHHHHHHhCCCCCCEEEEEEEEEccCcCCCCCCccEEEEEeEEEEEeCCCCCCCCCh
Confidence 44566677889988765432234678899999999999999999973 346789999999999999988899876
Q ss_pred cC-------------------CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--C
Q psy11418 399 FG-------------------VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--G 457 (553)
Q Consensus 399 ~~-------------------~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ 457 (553)
.+ ..+.++|+++|||||| ++.++++|++||.++++||+||.++||+||+||+|+.++ |
T Consensus 181 ~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR-~~~~qaifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~eg 259 (530)
T PLN02850 181 EDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLR-TPANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGASEG 259 (530)
T ss_pred hhcccccccccccccccccccccChhhhhcchhhhhc-CHHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCCcc
Confidence 53 1357899999999999 999999999999999999999999999999999998776 6
Q ss_pred CcceeeeeecCCCCCcceeEEeChhHHHHHh-ccCcceEe----------------cCCCCCCCC---------------
Q psy11418 458 GATAKPFVTHHNDLNMDLYMRIAPELYLKST-HGSYKVTY----------------HPDGPESGS--------------- 505 (553)
Q Consensus 458 ga~~~~~~t~~~~~~~~~yL~~Spel~~k~l-~~~~~~~~----------------~~e~~~~~~--------------- 505 (553)
|+..|.+. |||.++||++|||||+|++ +++++++| .+||+|+..
T Consensus 260 ga~~F~v~----yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~~y~evm~~~ 335 (530)
T PLN02850 260 GSAVFRLD----YKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVV 335 (530)
T ss_pred ccceeeec----cCCcceecCCCHHHHHHHHHHhcCCceEEEecccccCCCCCCccchhhccchhhhhhhcCHHHHHHHH
Confidence 66655554 8999999999999999996 46676655 577876410
Q ss_pred ---------------Ccc---c---------CCCCCceeeeHHHHHHH--HhCCCCCCCCCCChHHHHHH
Q psy11418 506 ---------------PVE---I---------DFTPPFRRLHMFPALEA--ALGVKLPNPTEFDTPEANKF 546 (553)
Q Consensus 506 ---------------~~~---~---------~~~~~f~rit~~eA~~~--~~g~~~~~~~~~~~~~~~~~ 546 (553)
... + .+..+|.|++|.||+.- -.|+++.+..+++++....+
T Consensus 336 E~ll~~i~~~l~~~~~~el~~i~~~~~~~~~~~~~~~~rit~~ea~~~L~~~g~~~~~~~dl~~~~E~~L 405 (530)
T PLN02850 336 DELFVAIFDGLNERCKKELEAIREQYPFEPLKYLPKTLRLTFAEGIQMLKEAGVEVDPLGDLNTESERKL 405 (530)
T ss_pred HHHHHHHHHHHHhhhhhhHHhhcccCCcchhhhcCCcccCCHHHHHHHHHHcCCCCCCCCCcchHHHHHH
Confidence 000 1 11235569999998763 35777666666666655544
No 53
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=99.96 E-value=5.7e-29 Score=269.18 Aligned_cols=174 Identities=13% Similarity=0.156 Sum_probs=143.1
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC--CCceeEEeeeEEEEeccCCCCCccccCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSIIPKKLTLLSPCLHMLPHMHFGVK 402 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~--~g~~El~~~~i~vl~~~~~~~P~~~~~~~ 402 (553)
|..+.++.+.+|+++.... .++.+..++.|+.||+|.|+|.+.+++ +|++||.+++++||+++..++|+..+. .
T Consensus 36 Fi~lrD~~g~iq~~~~~~~---~~~~~~~~~~l~~~s~v~v~G~v~~~~~~~~~~el~~~~i~vl~~~~~~~p~~~~~-~ 111 (450)
T PRK03932 36 FLQLRDGSCFKQLQVVKDN---GEEYFEEIKKLTTGSSVIVTGTVVESPRAGQGYELQATKIEVIGEDPEDYPIQKKR-H 111 (450)
T ss_pred EEEEECCCCcEEEEEEcCC---ChHHHHHHhcCCCCcEEEEEEEEEcCCCCCCCEEEEEEEEEEccCCCCCCCCCccc-c
Confidence 4566677777777765432 245677788999999999999998876 578999999999999987677865443 4
Q ss_pred ChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecC-------CCCCcce
Q psy11418 403 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHH-------NDLNMDL 475 (553)
Q Consensus 403 ~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~-------~~~~~~~ 475 (553)
+.++++++||||+| ++.++++|++||.+++++|+||+++||+||+||+|+.+++++...+|.+++ +|||.++
T Consensus 112 ~~~~~~~~r~l~lR-~~~~~~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~ 190 (450)
T PRK03932 112 SIEFLREIAHLRPR-TNKFGAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEA 190 (450)
T ss_pred ChHHHhhCceeecc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCceeccCCCCCCCceEeecccccccccccCCCc
Confidence 56889999999999 899999999999999999999999999999999999887333334454432 6999999
Q ss_pred eEEeChhHHHHHhccCcceEe----------------cCCCCCC
Q psy11418 476 YMRIAPELYLKSTHGSYKVTY----------------HPDGPES 503 (553)
Q Consensus 476 yL~~Spel~~k~l~~~~~~~~----------------~~e~~~~ 503 (553)
||++|||||+|+++++++++| .|||+|+
T Consensus 191 ~L~~Spql~lq~l~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~l 234 (450)
T PRK03932 191 YLTVSGQLYAEAYAMALGKVYTFGPTFRAENSNTRRHLAEFWMI 234 (450)
T ss_pred ccccCHHHHHHHHHhccCCeEEeeeccccCCCCCcccccccccc
Confidence 999999999999987776644 6888875
No 54
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.96 E-value=3.9e-29 Score=253.43 Aligned_cols=122 Identities=50% Similarity=0.907 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccc
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFR 290 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR 290 (553)
|++||.|++++|+||.++||+||+||+|+..++|+++++|.+....+|.++||++|||+|+|+++++|++|||+||||||
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR 80 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFR 80 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEeeecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEeccee
Confidence 47899999999999999999999999998766677789999865456999999999999999999999999999999999
Q ss_pred cCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcccccC
Q psy11418 291 NEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 291 ~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~~ 332 (553)
+|..+.+|++||||||+|++|+|++|+|+++|++|+++++.+
T Consensus 81 ~e~~~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~ 122 (269)
T cd00669 81 NEDLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREV 122 (269)
T ss_pred CCCCCCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHH
Confidence 997788999999999999999999999999999999997544
No 55
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=99.96 E-value=1.7e-28 Score=269.11 Aligned_cols=166 Identities=20% Similarity=0.318 Sum_probs=141.8
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEccccc-------CCCCceeEEeeeEEEEeccCCCCCcc
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK-------TKKGELSIIPKKLTLLSPCLHMLPHM 397 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~-------~~~g~~El~~~~i~vl~~~~~~~P~~ 397 (553)
|-.+-++.+.+|++++... ...+++..++..|+.||+|.|+|+|++ +.+|++||.+++++||++|..++|+.
T Consensus 98 Fl~LRd~~~~iQ~v~~~~~-~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~~~~~~El~v~~i~vls~a~~~lP~~ 176 (550)
T PTZ00401 98 FMVLRDGSDSVQAMAAVEG-DVPKEMIDFIGQIPTESIVDVEATVCKVEQPITSTSHSDIELKVKKIHTVTESLRTLPFT 176 (550)
T ss_pred EEEEEeCCcCEEEEEECCC-ccCHHHHHHHhcCCCCCEEEEEEEEEecCccCCCCCCccEEEEeeEEEEEeCCCCCCCCC
Confidence 4456678888998876432 134678899999999999999999875 33788999999999999998889987
Q ss_pred ccCC----------CChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcceeeee
Q psy11418 398 HFGV----------KDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPFV 465 (553)
Q Consensus 398 ~~~~----------~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~~~~ 465 (553)
..+. .+.++|+++|||||| ++.++++|++||.++++||+||.++||+||+||+|+.++ ||+..|.+.
T Consensus 177 ~~d~~~~~~~~~~~~~~dtrl~~R~LdlR-~~~~~~i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~egga~~F~v~ 255 (550)
T PTZ00401 177 LEDASRKESDEGAKVNFDTRLNSRWMDLR-TPASGAIFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKLE 255 (550)
T ss_pred cccccccccccccccChhhhhhhhhhhhc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCccccccccc
Confidence 6442 257899999999999 999999999999999999999999999999999999876 678887765
Q ss_pred ecCCCCCcceeEEeChhHHHHHhc-cCcceEe
Q psy11418 466 THHNDLNMDLYMRIAPELYLKSTH-GSYKVTY 496 (553)
Q Consensus 466 t~~~~~~~~~yL~~Spel~~k~l~-~~~~~~~ 496 (553)
|||.++||++|||||+|++. |+++++|
T Consensus 256 ----yf~~~~~L~qSpql~kq~li~~g~~rVf 283 (550)
T PTZ00401 256 ----YFNRFAYLAQSPQLYKQMVLQGDVPRVF 283 (550)
T ss_pred ----cCCCCeecCCCHHHHHHHHHhcCCCCEE
Confidence 99999999999999999985 5676654
No 56
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=9.5e-29 Score=259.96 Aligned_cols=169 Identities=20% Similarity=0.264 Sum_probs=150.4
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC--CCceeEEeeeEEEEeccCCCCCccccCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSIIPKKLTLLSPCLHMLPHMHFGVK 402 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~--~g~~El~~~~i~vl~~~~~~~P~~~~~~~ 402 (553)
|..+-++.+.+|++++..+. .++.+. +++|+.||+|.|+|+|++++ ++++||.+++++|++.+..++|++..+.+
T Consensus 36 Fi~lrDgsg~iQ~v~~~~~~--~~~~~~-~~~L~~es~v~V~G~v~~~~~a~~g~El~v~~i~Vl~~a~~~~Pi~~~~~~ 112 (435)
T COG0017 36 FLVLRDGSGFIQAVVPKNKV--YEELFK-AKKLTLESSVVVTGIVKASPKAPQGFELQVEKIEVLGEADPPYPIDKKEHS 112 (435)
T ss_pred EEEEEcCCcEEEEEEECCCC--cHHHhh-hhcCCCccEEEEEEEEEcCCCCCCCEEEEEEEEEEeeccCCCCCcCccccc
Confidence 44566888889988875322 355666 89999999999999999887 88999999999999999668999888777
Q ss_pred ChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcceeeeeecCCCCCcceeEEeC
Q psy11418 403 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPFVTHHNDLNMDLYMRIA 480 (553)
Q Consensus 403 ~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~~~~t~~~~~~~~~yL~~S 480 (553)
+.++++++|||++| ++..+++|++||.+++++|+||+++||+||+||+|++++ ||+.+|++. ||+.++||++|
T Consensus 113 ~~e~lld~rhL~lR-~~~~~Av~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~EGg~elF~v~----yf~~~a~LtqS 187 (435)
T COG0017 113 ELETLLDNRHLDLR-TPKIQAVFKIRSSILRAIREFFYENGFTEVHTPIITASATEGGGELFKVD----YFDKEAYLTQS 187 (435)
T ss_pred CHHHHHhchheecc-ccchHHHHhHHHHHHHHHHHHHHhCCcEEecCceEeccCCCCCceeEEEe----ecCcceEEecC
Confidence 89999999999999 999999999999999999999999999999999999999 556799999 99999999999
Q ss_pred hhHHHHHhccCcceEe--cCCCC
Q psy11418 481 PELYLKSTHGSYKVTY--HPDGP 501 (553)
Q Consensus 481 pel~~k~l~~~~~~~~--~~e~~ 501 (553)
||||++.++.+++++| .|.|+
T Consensus 188 ~QLyke~~~~al~rVf~igP~FR 210 (435)
T COG0017 188 PQLYKEALAAALERVFTIGPTFR 210 (435)
T ss_pred HHHHHHHHHHHhCceEEecCcee
Confidence 9999999998899988 55554
No 57
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=99.96 E-value=3e-28 Score=263.39 Aligned_cols=221 Identities=16% Similarity=0.169 Sum_probs=170.7
Q ss_pred HhcccccC--CCcccccccccccChHHHHHhhcccCCccEEEEEcccccC--CCCceeEEeeeEEEEeccC-CCCCcccc
Q psy11418 325 ISGRKEDR--NRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT--KKGELSIIPKKLTLLSPCL-HMLPHMHF 399 (553)
Q Consensus 325 i~~~~~~~--~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~--~~g~~El~~~~i~vl~~~~-~~~P~~~~ 399 (553)
|-.+-++. +.+|++++.. ..++++..++.|+.||+|.|+|.+.++ .++++||.+++++||++|. .++|++..
T Consensus 36 F~~lrD~~~~g~iQ~v~~~~---~~~~~~~~~~~l~~gs~V~v~G~v~~~~~~~~~~El~~~~i~vl~~~~~~~~P~~~~ 112 (453)
T TIGR00457 36 FLELNDGSSLGPIQAVINGE---DNPYLFQLLKSLTTGSSVSVTGKVVESPGKGQPVELQVKKIEVVGEAEPDDYPLQKK 112 (453)
T ss_pred EEEEECCCCCccEEEEEeCC---cChHHHHHHHcCCCCcEEEEEEEEEcCCCCCCCEEEEEeEEEEEecCCccCCCCCcc
Confidence 34455666 7899888753 134667788999999999999999876 4789999999999999997 56787654
Q ss_pred CCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CC-cceeeeeec-----CCCCC
Q psy11418 400 GVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GG-ATAKPFVTH-----HNDLN 472 (553)
Q Consensus 400 ~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~g-a~~~~~~t~-----~~~~~ 472 (553)
. .+.++++++|||++| ++.++++|++||.+++++|+||+++||+||+||+|+.++ +| +..|++.+. .+|||
T Consensus 113 ~-~~~~~~~~~r~l~lR-~~~~~~~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~eg~~~~F~v~~~~~~~~~~~~~ 190 (453)
T TIGR00457 113 E-HSLEFLRDIAHLRLR-TNTLGAVMRVRNALSQAIHRYFQENGFTWVSPPILTSNDCEGAGELFRVSTDGIDFSQDFFG 190 (453)
T ss_pred c-cChhhHhhCcceecC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCeEeecCCCCCCCceEecccccccchhccC
Confidence 4 466889999999999 999999999999999999999999999999999999887 33 335555431 33899
Q ss_pred cceeEEeChhHHHHHhccCcceEe----------------cCCCCCCCC-----------------------------C-
Q psy11418 473 MDLYMRIAPELYLKSTHGSYKVTY----------------HPDGPESGS-----------------------------P- 506 (553)
Q Consensus 473 ~~~yL~~Spel~~k~l~~~~~~~~----------------~~e~~~~~~-----------------------------~- 506 (553)
.++||++|||||+|+++++++++| .|||+|+.. .
T Consensus 191 ~~~yL~~Spql~lq~l~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~~~~~dvm~~~E~lv~~i~~~~~~~~~~ 270 (453)
T TIGR00457 191 KEAYLTVSGQLYLETYALALSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFANLNDLLQLAETLIKYIIKAVLENCSQ 270 (453)
T ss_pred CccccccCHHHHHHHHhhcccCceEeeeccccCCCCCCcCcchhccceeeeecCCHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999987776644 578886400 0
Q ss_pred ----cccCC------------CCCceeeeHHHHHHHHhCC------CCCCCCCCChHHHHHHHhCC
Q psy11418 507 ----VEIDF------------TPPFRRLHMFPALEAALGV------KLPNPTEFDTPEANKFLSDP 550 (553)
Q Consensus 507 ----~~~~~------------~~~f~rit~~eA~~~~~g~------~~~~~~~~~~~~~~~~~~~~ 550 (553)
...++ +.||+||||.||++..... +..++.+++.+.+..+++.+
T Consensus 271 ~~~~~~~~~~~~~~~~l~~~~~~~~~rit~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~L~~~~ 336 (453)
T TIGR00457 271 ELKFLEKNFDKDLIKRLENIINNKFARITYTDAIEILKESDKNFEYEDFWGDDLQTEHERFLAEEY 336 (453)
T ss_pred HHHHhhccCCchHHHHHHHhcCCCCceeEHHHHHHHHHhcCCCCcCCCCCCCCCCcHHHHHHHHHh
Confidence 01112 1379999999998855432 22344566777777777654
No 58
>PLN02221 asparaginyl-tRNA synthetase
Probab=99.96 E-value=2.7e-28 Score=267.52 Aligned_cols=216 Identities=13% Similarity=0.126 Sum_probs=167.0
Q ss_pred HhcccccC--CCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC-----CCceeEEeeeEEEEeccC-CCCCc
Q psy11418 325 ISGRKEDR--NRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-----KGELSIIPKKLTLLSPCL-HMLPH 396 (553)
Q Consensus 325 i~~~~~~~--~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~-----~g~~El~~~~i~vl~~~~-~~~P~ 396 (553)
|-.+-++. +.+|++++... ....+.|+.|++|.|+|+|+.++ +|++||.+++++|||++. .++|+
T Consensus 72 Fl~LRDgs~~g~iQvVv~~~~-------~~~~~~L~~ES~V~V~G~V~~~~~~~~~~~~iEl~v~~i~vl~~a~~~~~Pi 144 (572)
T PLN02221 72 FLEVNDGSCPANLQVMVDSSL-------YDLSTLVATGTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYPL 144 (572)
T ss_pred EEEEeCCcccccEEEEEcCch-------hhHHhcCCCceEEEEEEEEEeCCccCCCCccEEEEEeEEEEEecCCCCCCCC
Confidence 34556666 68898886421 12224689999999999997654 569999999999999986 47887
Q ss_pred cccCCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcceeeeeec-------
Q psy11418 397 MHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPFVTH------- 467 (553)
Q Consensus 397 ~~~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~~~~t~------- 467 (553)
... ..+.++++++|||++| ++.++++||+||.++++||+||.++||+||+||+|+.++ ||+.+|++.|.
T Consensus 145 ~~~-~~~~e~lrr~~hLR~R-~~~~~Ai~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~ 222 (572)
T PLN02221 145 PKT-KLTLEFLRDVLHLRSR-TNSISAVARIRNALAFATHSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERL 222 (572)
T ss_pred CCC-cCChHHHhhcchhhcC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeeccccCCCCccceeeeecccccccc
Confidence 654 3467888999999999 999999999999999999999999999999999999999 55668888542
Q ss_pred -------------------------------------------------------------------------------C
Q psy11418 468 -------------------------------------------------------------------------------H 468 (553)
Q Consensus 468 -------------------------------------------------------------------------------~ 468 (553)
.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (572)
T PLN02221 223 EQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASKEEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDYSK 302 (572)
T ss_pred cccccccCcccchhhhhhhhhhhhhcchhhhhhccccchhhhhhhhhhhhhhhhhhhhhhhhhhcccCCccccccccccc
Confidence 1
Q ss_pred CCCCcceeEEeChhHHHHHhccCcceEe----------------cCCCCCCC----------------------------
Q psy11418 469 NDLNMDLYMRIAPELYLKSTHGSYKVTY----------------HPDGPESG---------------------------- 504 (553)
Q Consensus 469 ~~~~~~~yL~~Spel~~k~l~~~~~~~~----------------~~e~~~~~---------------------------- 504 (553)
+|||.++||++|||||+|+++++++++| .+||+|+.
T Consensus 303 dyFg~~ayLtqS~QLy~e~~~~~l~rVfeIgP~FRAE~s~T~RHL~EFtmlE~Emaf~d~~dvm~l~E~lv~~i~~~l~~ 382 (572)
T PLN02221 303 DFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKYMCKWLLD 382 (572)
T ss_pred ccCCCCeeeccCHHHHHHHHHHhcCCeEEEccceecCCCCCCcccccccceeeeeecCCHHHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999999987777755 66777640
Q ss_pred C---Cc-----ccC----------CCCCceeeeHHHHHHHH-----hCCC----CCCCCCCChHHHHHHHhC
Q psy11418 505 S---PV-----EID----------FTPPFRRLHMFPALEAA-----LGVK----LPNPTEFDTPEANKFLSD 549 (553)
Q Consensus 505 ~---~~-----~~~----------~~~~f~rit~~eA~~~~-----~g~~----~~~~~~~~~~~~~~~~~~ 549 (553)
. .. ..+ +..||+||||.||++.. .|.+ +.++.+++++.+..+.+.
T Consensus 383 ~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIty~EAi~~L~~~~~~g~~~~~~~~~G~dl~~e~Er~L~~~ 454 (572)
T PLN02221 383 KCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEV 454 (572)
T ss_pred hhHHHHHHHhhhcCchhhhhhhhccCCCceEEEHHHHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHH
Confidence 0 00 011 45699999999999844 2433 234556666776666554
No 59
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=99.95 E-value=1.5e-28 Score=250.53 Aligned_cols=121 Identities=29% Similarity=0.561 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCC-CcceeeeeCHHHHHHHHHHccCCcEEEEcccc
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDL-NMDLYMRIAPELYLKMLVVGGLDRVYEVGRQF 289 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~-~~~~~L~~Spql~lk~l~~~g~~rVfei~~~F 289 (553)
+++||+|++++|+||.++||+||+||+|+++.+++ +.+|.+..... +..+||++|||||||+|+++|++|||+|||||
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g-~~~f~~~~~~~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~f 79 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEG-ARDFLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCF 79 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCC-CCCceeccccCCCceeecccCHHHHHHHHHhcCcCcEEEeccce
Confidence 47899999999999999999999999998544332 35698765443 44566999999999999999999999999999
Q ss_pred ccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcccccC
Q psy11418 290 RNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 290 R~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~~ 332 (553)
|+|+++++|++||||||||++|+|++|+|+++|++|+++++.+
T Consensus 80 R~e~~~~~r~~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~ 122 (280)
T cd00777 80 RDEDLRADRQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEV 122 (280)
T ss_pred eCCCCCCCccceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999888899999999999999999999999999987543
No 60
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=99.95 E-value=1.6e-27 Score=261.00 Aligned_cols=218 Identities=13% Similarity=0.125 Sum_probs=169.3
Q ss_pred HhcccccCC--CcccccccccccChHHHHHhhcccCCccEEEEEcccccCC----------CCceeEEe-----eeEEEE
Q psy11418 325 ISGRKEDRN--RPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK----------KGELSIIP-----KKLTLL 387 (553)
Q Consensus 325 i~~~~~~~~--~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~----------~g~~El~~-----~~i~vl 387 (553)
|..+-++.+ .+|++.+.. ...+..+++|+.|++|.|+|+++.++ ++++||.+ ++++||
T Consensus 103 Fv~lrDgsg~~~iQiVv~~~-----~~~~~~l~~l~~gs~v~v~G~v~~~~~~~~n~~g~~~~~~El~~~~~~~~~~~il 177 (586)
T PTZ00425 103 FVNLNDGSCHLNLQIIVDQS-----IENYEKLLKCGVGCCFRFTGKLIISPVQNENKKGLLKENVELALKDNSIHNFEIY 177 (586)
T ss_pred EEEEECCCCCcceEEEECCc-----hHHHHHHhcCCCccEEEEEEEEEcCCccccCcCCCCCccEEEEEecCCCceEEEE
Confidence 445555655 488776531 22345678899999999999997643 35699998 799999
Q ss_pred eccC--CCCCccccCCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcc-eee
Q psy11418 388 SPCL--HMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGAT-AKP 463 (553)
Q Consensus 388 ~~~~--~~~P~~~~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~-~~~ 463 (553)
+++. .++|+... ....|+++++||||+| ++.++++||+||.+..++|+||.++||+||+||+|++++ +||+ +|+
T Consensus 178 g~~~d~~~yPi~~k-~~~~e~lr~~rhL~lR-~~~~~avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~~EGa~elF~ 255 (586)
T PTZ00425 178 GENLDPQKYPLSKK-NHGKEFLREVAHLRPR-SYFISSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFT 255 (586)
T ss_pred eccCCCCCCCCCCc-cCChhhhhhccceecc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCCCcceEE
Confidence 9884 36787654 3568999999999999 999999999999999999999999999999999999999 5554 788
Q ss_pred eeec-----------------------------------------------------------CCCCCcceeEEeChhHH
Q psy11418 464 FVTH-----------------------------------------------------------HNDLNMDLYMRIAPELY 484 (553)
Q Consensus 464 ~~t~-----------------------------------------------------------~~~~~~~~yL~~Spel~ 484 (553)
+.|. .+|||+++||++|||||
T Consensus 256 V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~yF~k~ayL~~S~QLy 335 (586)
T PTZ00425 256 VTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAYPDQYLIDYKKDFFSKQAFLTVSGQLS 335 (586)
T ss_pred eeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCcceEEEcCchHH
Confidence 7542 15999999999999999
Q ss_pred HHHhccCcceEe----------------cCCCCCC----------------------------CC-Ccc---------cC
Q psy11418 485 LKSTHGSYKVTY----------------HPDGPES----------------------------GS-PVE---------ID 510 (553)
Q Consensus 485 ~k~l~~~~~~~~----------------~~e~~~~----------------------------~~-~~~---------~~ 510 (553)
+|+++++++++| .+||+|+ .. ... .+
T Consensus 336 lE~~~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~~v~~~vl~~~~~~i~~~~~~~~~~ 415 (586)
T PTZ00425 336 LENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAFADLYDNMELAESYIKYCIGYVLNNNFDDIYYFEENVETG 415 (586)
T ss_pred HHHHHhccCCEEEEeceEeCCCCCCCCCCcccceEEEEEecCCHHHHHHHHHHHHHHHHHHHhccccccccccccccccc
Confidence 999998888766 4677753 00 000 11
Q ss_pred --------CCCCceeeeHHHHHHHH------hCCCCCCCCCCChHHHHHHHhC
Q psy11418 511 --------FTPPFRRLHMFPALEAA------LGVKLPNPTEFDTPEANKFLSD 549 (553)
Q Consensus 511 --------~~~~f~rit~~eA~~~~------~g~~~~~~~~~~~~~~~~~~~~ 549 (553)
+..||+||||.||++.. .+.++.++.+++++.+..+++.
T Consensus 416 l~~~l~~~~~~pf~rIty~EAi~iL~~~~~~~~~~~~~G~dL~~e~Er~L~~~ 468 (586)
T PTZ00425 416 LISRLKNILDEDFAKITYTNVIDLLQPYSDSFEVPVKWGMDLQSEHERFVAEQ 468 (586)
T ss_pred HHHHHHHhcCCCCCcCCHHHHHHHHHHhHHhcCCCCCcccccchHHHHHHHHH
Confidence 24689999999998754 2445677778888888777765
No 61
>PRK09350 poxB regulator PoxA; Provisional
Probab=99.95 E-value=2e-28 Score=252.83 Aligned_cols=124 Identities=32% Similarity=0.521 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCeEEEecceecccc-CCCCCcceeeccC----CCCcceeeeeCHHHHHHHHHHccCCcE
Q psy11418 208 RHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHHN----DLNMDLYMRIAPELYLKMLVVGGLDRV 282 (553)
Q Consensus 208 ~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~-gga~a~~F~t~~~----~~~~~~~L~~Spql~lk~l~~~g~~rV 282 (553)
..+|++|+.|++.+|+||.++||+||+||+|+..+ +++.+.||.++.. ..|..+||++|||+++|+++++|++||
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~~rv 81 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGPI 81 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccccccCCcceEEecCHHHHHHHHhhccccce
Confidence 46899999999999999999999999999997543 5667889987633 337999999999999999999999999
Q ss_pred EEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhccccc
Q psy11418 283 YEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKED 331 (553)
Q Consensus 283 fei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~ 331 (553)
|+||||||+|+++.+|++||||+|||++|+|++|+|+++|+||+++++.
T Consensus 82 f~i~~~FR~e~~~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~ 130 (306)
T PRK09350 82 FQICKSFRNEEAGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC 130 (306)
T ss_pred EEecceeecCCCCCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999998899999999999999999999999999999999753
No 62
>PLN02603 asparaginyl-tRNA synthetase
Probab=99.95 E-value=2.5e-27 Score=260.00 Aligned_cols=219 Identities=11% Similarity=0.110 Sum_probs=168.9
Q ss_pred HhcccccCC--CcccccccccccChHHHHHhhc--ccCCccEEEEEcccccCCC--CceeEEeeeEEEEeccCCCCCccc
Q psy11418 325 ISGRKEDRN--RPCVMANARMYQSEEEFASDLV--KIKRGDIIGVTGSPGKTKK--GELSIIPKKLTLLSPCLHMLPHMH 398 (553)
Q Consensus 325 i~~~~~~~~--~iqv~~n~r~~~~~e~~~~~~~--~L~~gs~V~V~G~v~~~~~--g~~El~~~~i~vl~~~~~~~P~~~ 398 (553)
|..|-++.. .+|++++.. ... +..+. .|+.||+|.|+|++++++. +++||.+++++||++|..++|+..
T Consensus 127 Fi~l~Dgs~~~~lQ~v~~~~----~~~-~~~l~~~~l~~gs~V~V~G~v~~~~~~~~~~EL~v~~i~vlg~a~~~~Pi~~ 201 (565)
T PLN02603 127 FIEVNDGSCLSNMQCVMTPD----AEG-YDQVESGLITTGASVLVQGTVVSSQGGKQKVELKVSKIVVVGKSDPSYPIQK 201 (565)
T ss_pred EEEEECCCCCEeEEEEEECc----HHH-HHHHhhcCCCCCCEEEEEEEEEecCCCCccEEEEEeEEEEEECCCCCCCCcc
Confidence 455656554 588887542 122 33333 4999999999999988774 459999999999999988899865
Q ss_pred cCCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcc-eeeeee----------
Q psy11418 399 FGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGAT-AKPFVT---------- 466 (553)
Q Consensus 399 ~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~-~~~~~t---------- 466 (553)
.. ...++++.++||++| ++.+++++|+||.+++++|+||.++||+||+||+|++++ |||+ .|++.|
T Consensus 202 ~~-~s~e~lr~~~hLr~R-t~~~~ai~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~ 279 (565)
T PLN02603 202 KR-VSREFLRTKAHLRPR-TNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGG 279 (565)
T ss_pred cc-cchhhhhhhhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeecccCCCccccCceeeecccccccccc
Confidence 44 456888899999999 999999999999999999999999999999999999998 6666 666643
Q ss_pred ----------------cCCCCCcceeEEeChhHHHHHhccCcceEe----------------cCCCCCCCC---------
Q psy11418 467 ----------------HHNDLNMDLYMRIAPELYLKSTHGSYKVTY----------------HPDGPESGS--------- 505 (553)
Q Consensus 467 ----------------~~~~~~~~~yL~~Spel~~k~l~~~~~~~~----------------~~e~~~~~~--------- 505 (553)
..+|||.++||++|||||+|.++++++++| .+||+|+..
T Consensus 280 ~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~~E~~~~~l~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~dl~d 359 (565)
T PLN02603 280 SLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETYATALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLND 359 (565)
T ss_pred ccccccccCcccccccchhhhCcceeeccCchHHHHHHHhcccceEEEecceeCCCCCCccccccceeeeeeeecCCHHH
Confidence 125899999999999999999988877755 467776400
Q ss_pred --------------------CcccC-----------------CCCCceeeeHHHHHHHHh------CCCCCCCCCCChHH
Q psy11418 506 --------------------PVEID-----------------FTPPFRRLHMFPALEAAL------GVKLPNPTEFDTPE 542 (553)
Q Consensus 506 --------------------~~~~~-----------------~~~~f~rit~~eA~~~~~------g~~~~~~~~~~~~~ 542 (553)
...++ ...||.||||.||++-.. +..+.++.+++++.
T Consensus 360 ~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~~~~~~~~l~~~~~~~f~rity~EAi~iL~~~~~~~~~~~~~g~dl~~e~ 439 (565)
T PLN02603 360 DMACATAYLQYVVKYILENCKEDMEFFNTWIEKGIIDRLSDVVEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEH 439 (565)
T ss_pred HHHHHHHHHHHHHHHHHcccHhHHHhcCCcccccHHHHHHHhcCCCCCCCCHHHHHHHHHHhccccCCCCCccccccHHH
Confidence 00111 134899999999987442 23456667888888
Q ss_pred HHHHHhCC
Q psy11418 543 ANKFLSDP 550 (553)
Q Consensus 543 ~~~~~~~~ 550 (553)
+..+++..
T Consensus 440 Er~L~~~~ 447 (565)
T PLN02603 440 ERYITEEA 447 (565)
T ss_pred HHHHHHHh
Confidence 88777654
No 63
>KOG0556|consensus
Probab=99.94 E-value=4e-26 Score=232.69 Aligned_cols=213 Identities=22% Similarity=0.294 Sum_probs=171.8
Q ss_pred ccCCCcccccc-cccccChHHHHHhhcccCCccEEEEEcccccCC-------CCceeEEeeeEEEEeccCCCCCccccCC
Q psy11418 330 EDRNRPCVMAN-ARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-------KGELSIIPKKLTLLSPCLHMLPHMHFGV 401 (553)
Q Consensus 330 ~~~~~iqv~~n-~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~-------~g~~El~~~~i~vl~~~~~~~P~~~~~~ 401 (553)
+....+|+++. +.......+|..+.+.|..||+|.|.|.|.+.+ .+.+||++.++.+|+.+...+|+...+.
T Consensus 107 q~~~tVQ~~~~~~~~~~isk~Mvkf~~~is~ESiV~v~g~v~k~~~~i~scT~qdvEi~v~~iyviS~a~~~LPl~veDa 186 (533)
T KOG0556|consen 107 QQGSTVQCLVAVNEDGTISKQMVKFAGSISKESIVDVRGVVVKVKEPIKSCTVQDVEIHVRKIYVISIALPNLPLQVEDA 186 (533)
T ss_pred ccCceEEEEEEcCCCchHHHHHHHHHhhcCcceEEEEEEEEecCCCcccccccceeEEEEEEEEEEecccccCCeeehhh
Confidence 34444554442 222234568999999999999999999997654 5689999999999999999999865431
Q ss_pred -------------------CChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcc
Q psy11418 402 -------------------KDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGAT 460 (553)
Q Consensus 402 -------------------~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~ 460 (553)
.+.++|+++|.|||| +|..+++|++.+.++.++|+||..+||+||+||.|..++ |||+
T Consensus 187 srse~~eE~a~~~~~~~~~Vn~dtRLdnRvlDLR-tptnqAiFriq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGan 265 (533)
T KOG0556|consen 187 SRSEPDEEKAAEPESTLARVNLDTRLDNRVLDLR-TPTNQAIFRIQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGAN 265 (533)
T ss_pred cccccchhhhcCCccccceecccccccceeeecc-cccchheeehHHHHHHHHHHHHHhcCcceecccccccccCCCCce
Confidence 255899999999999 999999999999999999999999999999999999887 8899
Q ss_pred eeeeeecCCCCCcceeEEeChhHHHHHh-ccCcceEecC------CCCC----------C--------------------
Q psy11418 461 AKPFVTHHNDLNMDLYMRIAPELYLKST-HGSYKVTYHP------DGPE----------S-------------------- 503 (553)
Q Consensus 461 ~~~~~t~~~~~~~~~yL~~Spel~~k~l-~~~~~~~~~~------e~~~----------~-------------------- 503 (553)
+|.+. ||+.++||.+|||||+||+ +|+|.++|.+ |... +
T Consensus 266 vF~v~----Yfk~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdSnthRhltEFvGLD~EMaf~~hYhEVm~~i~~l 341 (533)
T KOG0556|consen 266 VFRVS----YFKQKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDSNTHRHLTEFVGLDLEMAFNEHYHEVMDTIGEL 341 (533)
T ss_pred eEEEE----eccCcchhhcChHHHHHHHHhcchhheeeecceeeccccchhhhhHHhhCcchhhHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999986 7888887722 2110 0
Q ss_pred ----------------------CCCcccCCCCCceeeeHHHHHH--HHhCCCCCCCCCCChHHHHHHH
Q psy11418 504 ----------------------GSPVEIDFTPPFRRLHMFPALE--AALGVKLPNPTEFDTPEANKFL 547 (553)
Q Consensus 504 ----------------------~~~~~~~~~~~f~rit~~eA~~--~~~g~~~~~~~~~~~~~~~~~~ 547 (553)
++.....|.+|--|++|.|++. +-+|+++.+.+|++|+.+.++.
T Consensus 342 fv~IF~~l~ery~~Eie~Vr~qyp~e~fkf~~~~lrl~~~e~v~mLreaGvE~g~~dDlsTe~Ek~LG 409 (533)
T KOG0556|consen 342 FVFIFKGLRERYAKEIETVRKQYPFEPFKFLEPPLRLTFKEGVAMLREAGVEMGDEDDLSTESEKKLG 409 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCceEeehHHHHHHHHHcCcccCCccccCChhHHHHH
Confidence 2223334445666999999866 7789999999999998877654
No 64
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.2e-24 Score=212.44 Aligned_cols=120 Identities=35% Similarity=0.588 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccccCC-CCCcceeecc----CCCCcceeeeeCHHHHHHHHHHccCCcEEE
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGG-ATAKPFVTHH----NDLNMDLYMRIAPELYLKMLVVGGLDRVYE 284 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gg-a~a~~F~t~~----~~~~~~~~L~~Spql~lk~l~~~g~~rVfe 284 (553)
.+..|+.|+.+||.||.++||+||+||.|+..++. ....+|.|.. ..-..++||+.|||.++|+|+++|-+++|+
T Consensus 15 ~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~~~ifq 94 (322)
T COG2269 15 NLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGSGPIFQ 94 (322)
T ss_pred HHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHccCCcchh
Confidence 47899999999999999999999999999866543 4678898842 233688999999999999999999999999
Q ss_pred EccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhccc
Q psy11418 285 VGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 285 i~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~ 329 (553)
||+||||+.....|+|||||||||..+.||.-+|+.+.++++.++
T Consensus 95 l~kvfRN~E~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl 139 (322)
T COG2269 95 LGKVFRNEEMGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVL 139 (322)
T ss_pred hhHHHhcccccccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998884
No 65
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=99.89 E-value=7e-23 Score=180.18 Aligned_cols=108 Identities=56% Similarity=0.740 Sum_probs=98.1
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEE
Q psy11418 92 TLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLT 171 (553)
Q Consensus 92 ~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~ 171 (553)
+|+|+|||+++|.+| +++|++|+|+++.+|+|++.+.. +++.|..+.+.|++||+|.|+|++.++++|++||.+++++
T Consensus 1 ~v~v~GwV~~~R~~g-~~~Fi~lrd~~~~lQ~v~~~~~~-~~~~~~~~~~~l~~g~~V~v~G~v~~~~~g~~El~~~~~~ 78 (108)
T cd04322 1 EVSVAGRIMSKRGSG-KLSFADLQDESGKIQVYVNKDDL-GEEEFEDFKKLLDLGDIIGVTGTPFKTKTGELSIFVKEFT 78 (108)
T ss_pred CEEEEEEEEEEecCC-CeEEEEEEECCeEEEEEEECCCC-CHHHHHHHHhcCCCCCEEEEEEEEEecCCCCEEEEeCEeE
Confidence 389999999999999 79999999999999999987654 4566765555599999999999999999999999999999
Q ss_pred EeccCCCCCCCCCCCCCCcchhhcccchhh
Q psy11418 172 LLSPCLHMLPHMHFGVKDKETRFRQRYLDL 201 (553)
Q Consensus 172 il~~~~~~lP~~~~~l~~~e~r~~~R~ldl 201 (553)
|+|+|+.|+|.+.++..+.++|+++|||||
T Consensus 79 ils~~~~plP~~~~~~~~~~~r~~~R~ldl 108 (108)
T cd04322 79 LLSKSLRPLPEKFHGLTDVETRYRQRYLDL 108 (108)
T ss_pred EeeccCCCCCCCccCcCChhheeecccccC
Confidence 999999999998888889999999999996
No 66
>KOG2411|consensus
Probab=99.88 E-value=1.2e-22 Score=211.62 Aligned_cols=195 Identities=22% Similarity=0.344 Sum_probs=154.1
Q ss_pred cccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccC---------CCCceeEEeeeEEEEeccCCCCCcc
Q psy11418 327 GRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---------KKGELSIIPKKLTLLSPCLHMLPHM 397 (553)
Q Consensus 327 ~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~---------~~g~~El~~~~i~vl~~~~~~~P~~ 397 (553)
-+.+..+.+|++..+..+. ........++.+|+|.|+|++... ++|.+|+.++++++++++...+|+.
T Consensus 69 ~LRD~~G~vq~lls~~s~~---l~~~~~~~v~~e~vv~v~gtvv~Rp~~sin~km~tg~vev~~e~~~vln~~~~~~p~~ 145 (628)
T KOG2411|consen 69 NLRDAYGIVQQLLSPDSFP---LAQKLENDVPLEDVVQVEGTVVSRPNESINSKMKTGFVEVVAEKVEVLNPVNKKLPFE 145 (628)
T ss_pred EeeccCcceEEEecchhhh---HHhcccCCCChhheEeeeeeEecccccccCccccccceEEEeeeeEEecCccCCCccc
Confidence 3556677888877764321 123445668999999999998533 3889999999999999999889986
Q ss_pred ccCC------CChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCceeeccC-CCcce--eeeeec
Q psy11418 398 HFGV------KDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSL-GFLEVETPMMNMIA-GGATA--KPFVTH 467 (553)
Q Consensus 398 ~~~~------~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~-~F~EV~TPiL~~~~-~ga~~--~~~~t~ 467 (553)
..+. ..+.+|+++|||||| +|+|+..|++||.+...||+||.++ ||+||+||+|...+ |||.- +|.++.
T Consensus 146 v~df~~ld~~~~er~rl~~RyldLR-~~kmq~nLrlRS~~v~~iR~yl~n~~GFvevETPtLFkrTPgGA~EFvVPtr~~ 224 (628)
T KOG2411|consen 146 VTDFKELDDLAGERIRLRFRYLDLR-RPKMQNNLRLRSNVVKKIRRYLNNRHGFVEVETPTLFKRTPGGAREFVVPTRTP 224 (628)
T ss_pred hhhhhhhhccccccccchhhhhhhc-cHHHHHHHHHHHHHHHHHHHHHhhhcCeeeccCcchhccCCCccceeecccCCC
Confidence 6543 367899999999999 9999999999999999999999775 59999999999999 99994 455544
Q ss_pred CCCCCcceeEEeChhHHHHHh-ccCcceEe---------------cCCCCCC------------------------CCCc
Q psy11418 468 HNDLNMDLYMRIAPELYLKST-HGSYKVTY---------------HPDGPES------------------------GSPV 507 (553)
Q Consensus 468 ~~~~~~~~yL~~Spel~~k~l-~~~~~~~~---------------~~e~~~~------------------------~~~~ 507 (553)
. |.=+-|-+|||.|+|.| +|++++.| .|||+-+ ....
T Consensus 225 ~---g~FYaLpQSPQQfKQlLMvsGidrYyQiARCfRDEdlR~DRQPEFTQvD~EMsF~~~~dim~liEdll~~~ws~~k 301 (628)
T KOG2411|consen 225 R---GKFYALPQSPQQFKQLLMVSGIDRYYQIARCFRDEDLRADRQPEFTQVDMEMSFTDQEDIMKLIEDLLRYVWSEDK 301 (628)
T ss_pred C---CceeecCCCHHHHHHHHHHhchhhHHhHHhhhcccccCcccCCcceeeeeEEeccCHHHHHHHHHHHHHHhchhhc
Confidence 2 44467999999999997 56665533 7888721 1223
Q ss_pred ccCCCCCceeeeHHHHHHHHh
Q psy11418 508 EIDFTPPFRRLHMFPALEAAL 528 (553)
Q Consensus 508 ~~~~~~~f~rit~~eA~~~~~ 528 (553)
.+.+..||+||||+|||++|+
T Consensus 302 ~~~l~~PF~riTY~~Am~~YG 322 (628)
T KOG2411|consen 302 GIQLPVPFPRITYADAMDKYG 322 (628)
T ss_pred CCCCCCCcccccHHHHHHHhC
Confidence 345667999999999999996
No 67
>KOG0554|consensus
Probab=99.88 E-value=5.3e-22 Score=202.85 Aligned_cols=207 Identities=14% Similarity=0.138 Sum_probs=164.4
Q ss_pred CCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC--CCceeEEeeeEEEEeccCCCCCccccCCCChhhhccc
Q psy11418 333 NRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQ 410 (553)
Q Consensus 333 ~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~--~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~e~~~~~ 410 (553)
..+||+.+. ...+.+..|++|.|+|.+..++ .+++|+.++++.+++.+..++|.+.. ...+++.++.
T Consensus 50 ~~lQvVv~~----------~~~q~la~Gt~i~~~g~l~~~~~~~q~iel~~eki~~vG~v~~~ypl~Kk-~lt~e~LR~~ 118 (446)
T KOG0554|consen 50 SPLQVVVDS----------EQSQLLATGTCISAEGVLKVSKGAKQQIELNAEKIKVVGTVDESYPLQKK-KLTPEMLRDK 118 (446)
T ss_pred cceEEEech----------HHhhhccccceEEEEeeEEeccchheeeeeeeeEEEEEeecCCCCCCccc-cCCHHHHhhc
Confidence 446777764 4567799999999999986654 66899999999999999888776644 4467999999
Q ss_pred cceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcc-eeeeeec----CCCCCcceeEEeChhHH
Q psy11418 411 RYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGAT-AKPFVTH----HNDLNMDLYMRIAPELY 484 (553)
Q Consensus 411 R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~-~~~~~t~----~~~~~~~~yL~~Spel~ 484 (553)
-||+.| +..+.+++|+||.+..++|+||.++||++|+||||+.++ +||+ +|.+.|. .+|||+++||++|.|||
T Consensus 119 ~HLR~R-t~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DCEGaGE~F~vtt~~d~~~~fFg~p~fLTVSgQLh 197 (446)
T KOG0554|consen 119 LHLRSR-TAKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDCEGAGEVFQVTTLTDYSKDFFGRPAFLTVSGQLH 197 (446)
T ss_pred ccccch-hhHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCCCCCcceEEEEecCcccccccCCceEEEEeceeh
Confidence 999999 999999999999999999999999999999999999999 7766 8877764 45999999999999999
Q ss_pred HHHhccCcceEe--cCCCC--------------CC------------------------------C-------------C
Q psy11418 485 LKSTHGSYKVTY--HPDGP--------------ES------------------------------G-------------S 505 (553)
Q Consensus 485 ~k~l~~~~~~~~--~~e~~--------------~~------------------------------~-------------~ 505 (553)
++.++.+++++| .|.|+ |+ . +
T Consensus 198 lE~~a~~LsrvyTfgP~FRAEnS~tsRHLAEFwMlEaE~AF~~sl~d~m~~~e~~~K~mik~llek~~edmel~~k~~~~ 277 (446)
T KOG0554|consen 198 LEAMACALSRVYTFGPTFRAENSHTSRHLAEFWMLEAELAFAESLDDLMSCAEAYIKHMIKYLLEKCIEDMELMHKNEDP 277 (446)
T ss_pred HHHHHhhhcceEeeccceecccCCchhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhheeccccCC
Confidence 999999998877 44443 21 0 0
Q ss_pred C----cccCCCCCceeeeHHHHHHHHh-------CCCCCCCCCCChHHHHHHHhCCC
Q psy11418 506 P----VEIDFTPPFRRLHMFPALEAAL-------GVKLPNPTEFDTPEANKFLSDPN 551 (553)
Q Consensus 506 ~----~~~~~~~~f~rit~~eA~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~ 551 (553)
. ..-.+..+|.+|||.||++... ...+.++.++.++.+..+++-++
T Consensus 278 ~~~~rl~~~~~~~~~~~tYteAie~L~~a~t~~fk~~~kwG~~l~~ehe~yL~~~~~ 334 (446)
T KOG0554|consen 278 GSIDRLELVAKENLLRITYTEAIELLQKAVTKKFKTPPKWGIDLSTEHEKYLVEECF 334 (446)
T ss_pred CccchhhhhccchhhhccHHHHHHHHHHhcccccccCcccccccchhhHHHHHHHhc
Confidence 0 0011124578999999988332 34456777888888888776553
No 68
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=99.84 E-value=2.1e-21 Score=203.46 Aligned_cols=130 Identities=28% Similarity=0.442 Sum_probs=101.2
Q ss_pred ChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CC-cceeeeeec-CCCCCcceeEEe
Q psy11418 403 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GG-ATAKPFVTH-HNDLNMDLYMRI 479 (553)
Q Consensus 403 ~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~g-a~~~~~~t~-~~~~~~~~yL~~ 479 (553)
++|+++++|||++| ++.++++|++||.++++||+||+++||+||+||+|++++ +| +..|++.+. ..+||.++||++
T Consensus 1 ~~e~~~~~r~l~~r-~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~ 79 (335)
T PF00152_consen 1 DEETRLDNRHLDLR-TPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQ 79 (335)
T ss_dssp -HHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-S
T ss_pred Chhhhhhccceecc-CcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCc
Confidence 46899999999999 999999999999999999999999999999999999999 44 555555532 558999999999
Q ss_pred ChhHHHHHhccC-cceEe----------------cCCCCCCC------------------------CCc--------ccC
Q psy11418 480 APELYLKSTHGS-YKVTY----------------HPDGPESG------------------------SPV--------EID 510 (553)
Q Consensus 480 Spel~~k~l~~~-~~~~~----------------~~e~~~~~------------------------~~~--------~~~ 510 (553)
|||||||++..+ ++++| .|||+|+. ... .++
T Consensus 80 Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~~~~~~~~~~~~~~~ 159 (335)
T PF00152_consen 80 SPQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFKELLENAKELSLNID 159 (335)
T ss_dssp SSHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred ChHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHHHHHHHHHHHHHhccCcccccccc
Confidence 999999998433 66655 66787640 000 456
Q ss_pred CCCCceeeeHHHHHHHHhCCCCC
Q psy11418 511 FTPPFRRLHMFPALEAALGVKLP 533 (553)
Q Consensus 511 ~~~~f~rit~~eA~~~~~g~~~~ 533 (553)
+..||+|++|.||++.|++.++.
T Consensus 160 ~~~~f~ri~~~ea~~~~~~~~~~ 182 (335)
T PF00152_consen 160 LPKPFPRITYEEAFEIYGGDKPD 182 (335)
T ss_dssp SSSS-EEEEHHHHHHHHHHTTTT
T ss_pred ccCCceEeeehHHHHHhhccccc
Confidence 77789999999999999998743
No 69
>PRK06462 asparagine synthetase A; Reviewed
Probab=99.82 E-value=2.5e-20 Score=194.92 Aligned_cols=144 Identities=19% Similarity=0.246 Sum_probs=111.3
Q ss_pred CChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-----CCcceeeeee-cCCCCCcce
Q psy11418 402 KDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-----GGATAKPFVT-HHNDLNMDL 475 (553)
Q Consensus 402 ~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-----~ga~~~~~~t-~~~~~~~~~ 475 (553)
.+.+.++++|++++| ++.++++|++||.+++++|+||+++||+||+||+|+.++ +|+. .|+.+ +.+|||.++
T Consensus 8 ~~~~~~~~~r~~~lr-~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~-~~~~~~~~~~~~~~~ 85 (335)
T PRK06462 8 KEYEEFLRMSWKHIS-SEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSD-LPVKQISIDFYGVEY 85 (335)
T ss_pred cchhhhhhhHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCcccc-CCccccccccCCCce
Confidence 356889999999999 999999999999999999999999999999999999885 3444 66654 466899999
Q ss_pred eEEeChhHHHHHhccCcce------------------EecCCCCCCCC--------------------------------
Q psy11418 476 YMRIAPELYLKSTHGSYKV------------------TYHPDGPESGS-------------------------------- 505 (553)
Q Consensus 476 yL~~Spel~~k~l~~~~~~------------------~~~~e~~~~~~-------------------------------- 505 (553)
||++|||||++.+++++++ .|+|||+|+..
T Consensus 86 yL~~Spql~k~ll~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv~~i~~~~~~~~~~~ 165 (335)
T PRK06462 86 YLADSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELLEEHEDE 165 (335)
T ss_pred eeccCHHHHHHHHHhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999998887655543 45778887400
Q ss_pred -----CcccCCCCCceeeeHHHHHH--HHhCCCCCCCCCCChHHHHHHH
Q psy11418 506 -----PVEIDFTPPFRRLHMFPALE--AALGVKLPNPTEFDTPEANKFL 547 (553)
Q Consensus 506 -----~~~~~~~~~f~rit~~eA~~--~~~g~~~~~~~~~~~~~~~~~~ 547 (553)
....+++.||+||||.||++ ++.|++.....+++.+.+..+.
T Consensus 166 i~~~~~~~~~~~~p~~rit~~eA~~~l~~~~~~~~~~~~l~~~~E~~l~ 214 (335)
T PRK06462 166 LEFFGRDLPHLKRPFKRITHKEAVEILNEEGCRGIDLEELGSEGEKSLS 214 (335)
T ss_pred HHhcCCccccCCCCCeEEEHHHHHHHHHhcCCCcchHHHHhHHHHHHHH
Confidence 00113557999999999999 6677765554444444444443
No 70
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=99.82 E-value=4.2e-20 Score=192.35 Aligned_cols=144 Identities=19% Similarity=0.230 Sum_probs=113.0
Q ss_pred ChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChh
Q psy11418 403 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPE 482 (553)
Q Consensus 403 ~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spe 482 (553)
+.++++++||||+| ++..++++++||.+++++|+||.++||+||+||+|+.++.++.+.+|.+ +|||.++||++|||
T Consensus 3 ~~~~~~~~r~l~lr-~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~--~~~~~~~yL~~Spq 79 (322)
T cd00776 3 NLETLLDNRHLDLR-TPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKV--SYFGKPAYLAQSPQ 79 (322)
T ss_pred ChHhhhhCceeeeC-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCcccc--ccCCCcceecCCHH
Confidence 56899999999999 9999999999999999999999999999999999999884444444443 38999999999999
Q ss_pred HHHHHhccCcce----------------EecCCCCCCCC-----------------------------------------
Q psy11418 483 LYLKSTHGSYKV----------------TYHPDGPESGS----------------------------------------- 505 (553)
Q Consensus 483 l~~k~l~~~~~~----------------~~~~e~~~~~~----------------------------------------- 505 (553)
||||++..++++ .|+|||+|+..
T Consensus 80 l~lk~l~~~~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~~~~~~~~~ 159 (322)
T cd00776 80 LYKEMLIAALERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVNQLN 159 (322)
T ss_pred HHHHHHHHhhhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhccC
Confidence 999999644544 35788887510
Q ss_pred CcccCCCCCceeeeHHHHHHHHhCCCC----CCCCCCChHHHHHHHhC
Q psy11418 506 PVEIDFTPPFRRLHMFPALEAALGVKL----PNPTEFDTPEANKFLSD 549 (553)
Q Consensus 506 ~~~~~~~~~f~rit~~eA~~~~~g~~~----~~~~~~~~~~~~~~~~~ 549 (553)
....++..||+||||.||++.+.+++. .++.+++.+....+++.
T Consensus 160 ~~~~~~~~~~~rit~~eA~~~l~~~~~~~~~~~~~~l~~~~e~~l~~~ 207 (322)
T cd00776 160 RELLKPLEPFPRITYDEAIELLREKGVEEEVKWGEDLSTEHERLLGEI 207 (322)
T ss_pred cccccCCCCceEEEHHHHHHHHHHcCCCCCCCccchhcHHHHHHHHHH
Confidence 001244579999999999998887653 34445555655555543
No 71
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=99.81 E-value=2.5e-19 Score=163.75 Aligned_cols=109 Identities=28% Similarity=0.404 Sum_probs=93.0
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc---------c
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---------K 159 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t---------~ 159 (553)
.|++|+|+|||+++|.+| |++|++|+|+++.+|+++..+.. ..| ..++.|+.||+|.|+|++.+. +
T Consensus 13 ~g~~V~i~Gwv~~~R~~g-k~~Fi~LrD~~g~~Q~v~~~~~~---~~~-~~~~~l~~gs~V~V~G~~~~~~~~~~~~~~~ 87 (135)
T cd04317 13 VGQEVTLCGWVQRRRDHG-GLIFIDLRDRYGIVQVVFDPEEA---PEF-ELAEKLRNESVIQVTGKVRARPEGTVNPKLP 87 (135)
T ss_pred CCCEEEEEEeEehhcccC-CEEEEEEecCCeeEEEEEeCCch---hHH-HHHhCCCCccEEEEEEEEECCCccccCCCCC
Confidence 467899999999999999 79999999999999999986542 224 456789999999999998753 3
Q ss_pred CCceeEeeeeEEEeccCCCCCCCCCC--CCCCcchhhcccchhhhc
Q psy11418 160 KGELSIIPKKLTLLSPCLHMLPHMHF--GVKDKETRFRQRYLDLMI 203 (553)
Q Consensus 160 ~ge~~l~~~~i~il~~~~~~lP~~~~--~l~~~e~r~~~R~ldl~~ 203 (553)
+|++||.++++++|++| .++|.... +..+.++|+++||||||.
T Consensus 88 ~~~~El~~~~i~vl~~~-~~lP~~~~~~~~~~~~~r~~~R~LdLR~ 132 (135)
T cd04317 88 TGEIEVVASELEVLNKA-KTLPFEIDDDVNVSEELRLKYRYLDLRR 132 (135)
T ss_pred CCcEEEEEeEEEEEECC-CCCCCccccccCCCHHHhhhcceeecCC
Confidence 68899999999999999 78997653 345789999999999973
No 72
>KOG0555|consensus
Probab=99.79 E-value=3e-19 Score=182.08 Aligned_cols=212 Identities=16% Similarity=0.180 Sum_probs=166.1
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC-----CCceeEEeeeEEEEeccCCC-CCccc
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-----KGELSIIPKKLTLLSPCLHM-LPHMH 398 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~-----~g~~El~~~~i~vl~~~~~~-~P~~~ 398 (553)
|.-+.++.+-+|++.+.+-.+ --..-.|..+++|.|-|++++.+ +|++||.++.|+|++.|+.. +-+..
T Consensus 143 FivLrdg~gflqCVl~~kl~~-----~yd~~~Ls~essv~vYG~i~~~p~GK~apgghEl~vdy~Eiig~Apag~~~n~l 217 (545)
T KOG0555|consen 143 FIVLRDGTGFLQCVLSDKLCQ-----SYDALTLSTESSVTVYGTIKKLPEGKSAPGGHELNVDYWEIIGLAPAGGFDNPL 217 (545)
T ss_pred EEEEecCCceEEEEEcchhhh-----hhccccccccceEEEEEEEecCcCCCCCCCCceEEeeeeeeecccCCCcccccc
Confidence 455667888888888753211 11234588999999999997764 78999999999999988753 33444
Q ss_pred cCCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcceeeeeecCCCCCccee
Q psy11418 399 FGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPFVTHHNDLNMDLY 476 (553)
Q Consensus 399 ~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~~~~t~~~~~~~~~y 476 (553)
...++++..+++|||.+| ....+.+|+.|+.+++++|++|.+.|++||.+|+|+... ||+++|.++ |||.++|
T Consensus 218 ne~s~~~~~LdnrHl~iR-ge~~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVEGGsTLFkld----YyGEeAy 292 (545)
T KOG0555|consen 218 NEESDVDVLLDNRHLVIR-GENASKVLKARAALLRAMRDHYFERGYTEVTPPTMVQTQVEGGSTLFKLD----YYGEEAY 292 (545)
T ss_pred cccCCcceEeccceeEEe-chhHHHHHHHHHHHHHHHHHHHHhcCceecCCCceEEEEecCcceEEeec----ccCchhh
Confidence 556688999999999999 999999999999999999999999999999999999998 889999999 9999999
Q ss_pred EEeChhHHHHHhccCcceEe----------------cCCCCCC-----------------------------------CC
Q psy11418 477 MRIAPELYLKSTHGSYKVTY----------------HPDGPES-----------------------------------GS 505 (553)
Q Consensus 477 L~~Spel~~k~l~~~~~~~~----------------~~e~~~~-----------------------------------~~ 505 (553)
|++|.|||++...-+++.+| -.|+++. -.
T Consensus 293 LTQSSQLYLEtclpAlgdvy~I~~SyRAEkSrTRRHLsEytHVEaE~afltfd~ll~~iE~lvc~~vdr~l~dp~~~li~ 372 (545)
T KOG0555|consen 293 LTQSSQLYLETCLPALGDVYCIQQSYRAEKSRTRRHLSEYTHVEAECAFLTFDDLLDRIEALVCDSVDRLLEDPIAPLIK 372 (545)
T ss_pred ccchhHHHHHHhhhhcCceeEecHhhhhhhhhhhhhhhhheeeeeecccccHHHHHHHHHHHHHHHHHHHHhChhhhhHH
Confidence 99999999999754444433 1122110 01
Q ss_pred CcccCCC---CCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHH
Q psy11418 506 PVEIDFT---PPFRRLHMFPALEAALGVKLPNPTEFDTPEANKF 546 (553)
Q Consensus 506 ~~~~~~~---~~f~rit~~eA~~~~~g~~~~~~~~~~~~~~~~~ 546 (553)
..+++|. .||+||.|.||+++.-..++.+.+..+.+...++
T Consensus 373 ~lnP~f~~P~~PFkRm~Y~dAI~wLke~~vk~edg~~fefGdDI 416 (545)
T KOG0555|consen 373 QLNPDFKAPKRPFKRMNYSDAIEWLKEHDVKKEDGTDFEFGDDI 416 (545)
T ss_pred HhCCCCCCCCCchhcCCHHHHHHHHHhcCCcCccCcccccccch
Confidence 2345664 4899999999999999888887665555433333
No 73
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=99.73 E-value=4.4e-17 Score=142.12 Aligned_cols=101 Identities=23% Similarity=0.264 Sum_probs=85.0
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc--CCceeEeeee
Q psy11418 92 TLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSIIPKK 169 (553)
Q Consensus 92 ~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~--~ge~~l~~~~ 169 (553)
+|+|+|||+++|.+| |++|++|+|+++.+|++++.+ . +++.| ...+.|+.||+|.|+|.+.+++ .+++||.+++
T Consensus 1 ~V~v~Gwv~~~R~~g-k~~Fi~lrD~~g~iQ~v~~~~-~-~~~~~-~~~~~l~~~s~v~V~G~v~~~~~~~~~~Ei~~~~ 76 (103)
T cd04319 1 KVTLAGWVYRKREVG-KKAFIVLRDSTGIVQAVFSKD-L-NEEAY-REAKKVGIESSVIVEGAVKADPRAPGGAEVHGEK 76 (103)
T ss_pred CEEEEEEEEeEEcCC-CeEEEEEecCCeeEEEEEeCC-C-CHHHH-HHHhCCCCCCEEEEEEEEEECCCCCCCEEEEEEE
Confidence 389999999999999 899999999999999999875 2 34445 4557899999999999988654 5679999999
Q ss_pred EEEeccCCCCCCCCCCCCCCcchhhcccch
Q psy11418 170 LTLLSPCLHMLPHMHFGVKDKETRFRQRYL 199 (553)
Q Consensus 170 i~il~~~~~~lP~~~~~l~~~e~r~~~R~l 199 (553)
++++++|. ++|.... .+.++++++|||
T Consensus 77 i~vl~~a~-~~pi~~~--~~~~~~~~~rhL 103 (103)
T cd04319 77 LEIIQNVE-FFPITED--ASDEFLLDVRHL 103 (103)
T ss_pred EEEEecCC-CCccCCC--CCHHHHhhccCC
Confidence 99999996 7886533 378899999996
No 74
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=99.72 E-value=6.5e-17 Score=140.72 Aligned_cols=92 Identities=24% Similarity=0.352 Sum_probs=78.2
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC-------Ccee
Q psy11418 92 TLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK-------GELS 164 (553)
Q Consensus 92 ~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~-------ge~~ 164 (553)
+|+|+|||+++|.+|++++|++|||+++.+|++++.+.....+.+...++.|+.||+|.|+|++.++++ |++|
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~E 80 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGYTIQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVKKPEEPIKSCTQQDVE 80 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCceEEEEEeCCcccCCHHHHHHHhcCCCccEEEEEEEEECCCCcccCCCcCcEE
Confidence 389999999999999889999999999999999987642112334466788999999999999987644 8999
Q ss_pred EeeeeEEEeccCCCCCCCC
Q psy11418 165 IIPKKLTLLSPCLHMLPHM 183 (553)
Q Consensus 165 l~~~~i~il~~~~~~lP~~ 183 (553)
|.++++++|++|..++|..
T Consensus 81 l~~~~i~il~~~~~~~P~~ 99 (102)
T cd04320 81 LHIEKIYVVSEAAEPLPFQ 99 (102)
T ss_pred EEEEEEEEEecCCCCCCCC
Confidence 9999999999998888854
No 75
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=99.70 E-value=3.9e-17 Score=168.83 Aligned_cols=124 Identities=21% Similarity=0.285 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcceeeeeecC---CCCCcceeEEeChhHHHHH-hccCcceEe---
Q psy11418 425 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHH---NDLNMDLYMRIAPELYLKS-THGSYKVTY--- 496 (553)
Q Consensus 425 l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~~~~~~t~~---~~~~~~~yL~~Spel~~k~-l~~~~~~~~--- 496 (553)
|++||.+++++|+||.++||+||+||+|+.++ +++.+.+|.|+. ++++.++||++|||||+|+ ++++++++|
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfeig 80 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQIC 80 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEEc
Confidence 57999999999999999999999999999985 445566666642 3556899999999999996 466666654
Q ss_pred ------------cCCCCCCCC-----C--------------cccCCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHHHH
Q psy11418 497 ------------HPDGPESGS-----P--------------VEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANK 545 (553)
Q Consensus 497 ------------~~e~~~~~~-----~--------------~~~~~~~~f~rit~~eA~~~~~g~~~~~~~~~~~~~~~~ 545 (553)
+|||+|+.. . .-..+..||+||||.||+++++|+++... +.+++..
T Consensus 81 p~FRaE~~~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~i~~~~~~~~~~it~~ea~~~~~~~~~~~~---~~~~~~~ 157 (304)
T TIGR00462 81 KVFRNGERGRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQELLGDPFAPWERLSYQEAFLRYAGIDPLTA---SLDELAA 157 (304)
T ss_pred CceeCCCCCCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcEEEEHHHHHHHHhCCCcccC---CHHHHHH
Confidence 778877410 0 00114579999999999999999988643 3455555
Q ss_pred HHhCCC
Q psy11418 546 FLSDPN 551 (553)
Q Consensus 546 ~~~~~~ 551 (553)
++.+.|
T Consensus 158 ~~~~~g 163 (304)
T TIGR00462 158 AAAAHG 163 (304)
T ss_pred HHHHcC
Confidence 555444
No 76
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2.6e-17 Score=162.71 Aligned_cols=125 Identities=25% Similarity=0.314 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcceeeeeec----CCCCCcceeEEeChhHHHHHhc--cC----
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTH----HNDLNMDLYMRIAPELYLKSTH--GS---- 491 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~~~~~~t~----~~~~~~~~yL~~Spel~~k~l~--~~---- 491 (553)
..|..|+.++++||.||.++||+||+||.|+.++ ..+.+.+|.|. .+.-+.+.||++|||++||+|. |+
T Consensus 14 ~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~~~if 93 (322)
T COG2269 14 DNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGSGPIF 93 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHccCCcch
Confidence 4589999999999999999999999999999999 66779999985 2233689999999999999982 11
Q ss_pred ----------cceEecCCCCCC--CCCc----------------ccCCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHH
Q psy11418 492 ----------YKVTYHPDGPES--GSPV----------------EIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEA 543 (553)
Q Consensus 492 ----------~~~~~~~e~~~~--~~~~----------------~~~~~~~f~rit~~eA~~~~~g~~~~~~~~~~~~~~ 543 (553)
-+..|+|||+|+ +... -.+ ..+++++||+|||.+|+|+|+... +..++
T Consensus 94 ql~kvfRN~E~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~-~~~~E~ls~~eaF~r~~gid~l~~---~~~~L 169 (322)
T COG2269 94 QLGKVFRNEEMGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLE-CVEAERLSYQEAFLRYLGIDPLSA---DKTEL 169 (322)
T ss_pred hhhHHHhcccccccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHc-cCCcceeeHHHHHHHHhCCCcccc---cHHHH
Confidence 234679999994 3210 011 246999999999999999998763 33566
Q ss_pred HHHHhCCC
Q psy11418 544 NKFLSDPN 551 (553)
Q Consensus 544 ~~~~~~~~ 551 (553)
...+...|
T Consensus 170 ~~~~~~~~ 177 (322)
T COG2269 170 REAAAKLG 177 (322)
T ss_pred HHHHHhcC
Confidence 66665554
No 77
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=99.69 E-value=3.7e-16 Score=137.44 Aligned_cols=93 Identities=31% Similarity=0.440 Sum_probs=80.2
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc--CCceeEe
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSII 166 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~--~ge~~l~ 166 (553)
.|++|+|+|||+++|.+| +++|++|||+++.+|++++.+.. +++.| +.++.|+.||+|.|+|++.+++ .+++||.
T Consensus 11 ~g~~V~v~Gwv~~~R~~g-~~~Fi~LrD~~g~iQ~v~~~~~~-~~~~~-~~~~~l~~es~V~V~G~v~~~~~~~~~~Ei~ 87 (108)
T cd04316 11 DGEEVTVAGWVHEIRDLG-GIKFVILRDREGIVQVTAPKKKV-DKELF-KTVRKLSRESVISVTGTVKAEPKAPNGVEII 87 (108)
T ss_pred CCCEEEEEEEEEeeeccC-CeEEEEEecCCeeEEEEEeCCCC-CHHHH-HHHhCCCCcCEEEEEEEEEeCCCCCCCEEEE
Confidence 577899999999999999 89999999999999999986542 33444 5678899999999999998765 3689999
Q ss_pred eeeEEEeccCCCCCCCCC
Q psy11418 167 PKKLTLLSPCLHMLPHMH 184 (553)
Q Consensus 167 ~~~i~il~~~~~~lP~~~ 184 (553)
+++++++++|..++|.++
T Consensus 88 ~~~i~il~~~~~~~P~~~ 105 (108)
T cd04316 88 PEEIEVLSEAKTPLPLDP 105 (108)
T ss_pred EeEEEEEeCCCCCCCcCc
Confidence 999999999988898653
No 78
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=99.64 E-value=4.4e-16 Score=162.71 Aligned_cols=79 Identities=63% Similarity=1.146 Sum_probs=72.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhHHHHHh-ccCcceEe
Q psy11418 418 NERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKST-HGSYKVTY 496 (553)
Q Consensus 418 ~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel~~k~l-~~~~~~~~ 496 (553)
||.++++|++||.++++||+||.++||+||+||+|+++++|+++.+|.++.++|+.++||++|||||||++ +++++++|
T Consensus 1 ~~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g~~~vf 80 (329)
T cd00775 1 NEEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVY 80 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEeccCCCCcceeeccCHHHHHHHHHhcCCCcEE
Confidence 57889999999999999999999999999999999988888888899887779999999999999999997 46777766
No 79
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=99.61 E-value=1e-15 Score=156.38 Aligned_cols=108 Identities=23% Similarity=0.423 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcceeeeeecCCC-CCcceeEEeChhHHHHHh-ccCcceEe-----
Q psy11418 425 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHHND-LNMDLYMRIAPELYLKST-HGSYKVTY----- 496 (553)
Q Consensus 425 l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~~~~~~t~~~~-~~~~~yL~~Spel~~k~l-~~~~~~~~----- 496 (553)
|++||.++++||+||.++||+||+||+|+.++ +|+.- |.+.... .+..+||++|||||||++ +++++++|
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~--f~~~~~~~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~ 78 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARD--FLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARC 78 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCC--ceeccccCCCceeecccCHHHHHHHHHhcCcCcEEEeccc
Confidence 57899999999999999999999999999877 66643 4443222 244566999999999986 57777655
Q ss_pred ----------cCCCCCCCC------------------------CcccCCCCCceeeeHHHHHHHHhCCCCCCC
Q psy11418 497 ----------HPDGPESGS------------------------PVEIDFTPPFRRLHMFPALEAALGVKLPNP 535 (553)
Q Consensus 497 ----------~~e~~~~~~------------------------~~~~~~~~~f~rit~~eA~~~~~g~~~~~~ 535 (553)
++||+++.. ....++..||+||||.||++.+ |+++.+.
T Consensus 79 fR~e~~~~~r~~Ef~~~e~e~~~~~~~dlm~~~e~li~~i~~~~~~~~~~~p~~rity~eA~~~~-~~~~~~~ 150 (280)
T cd00777 79 FRDEDLRADRQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVLGVELTTPFPRMTYAEAMERY-GFKFLWI 150 (280)
T ss_pred eeCCCCCCCccceeEEeEeeeccCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCceeeHHHHHHHh-CCCCccc
Confidence 567765310 0011455799999999999987 4444433
No 80
>PRK09350 poxB regulator PoxA; Provisional
Probab=99.59 E-value=2.4e-15 Score=155.61 Aligned_cols=127 Identities=22% Similarity=0.291 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcceeeeeecCC----CCCcceeEEeChhHHHHHh-ccCcceE
Q psy11418 422 RHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHHN----DLNMDLYMRIAPELYLKST-HGSYKVT 495 (553)
Q Consensus 422 ~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~~~~~~t~~~----~~~~~~yL~~Spel~~k~l-~~~~~~~ 495 (553)
..+|++|+.++++||+||.++||+||+||+|+..+ +|+.+.||.++.. ..|..+||++|||+|+|++ ++++.++
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~~rv 81 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGPI 81 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccccccCCcceEEecCHHHHHHHHhhccccce
Confidence 47899999999999999999999999999999877 7788888877521 2279999999999999975 4455544
Q ss_pred e---------------cCCCCCCCCC-----------------cccCCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHH
Q psy11418 496 Y---------------HPDGPESGSP-----------------VEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEA 543 (553)
Q Consensus 496 ~---------------~~e~~~~~~~-----------------~~~~~~~~f~rit~~eA~~~~~g~~~~~~~~~~~~~~ 543 (553)
| .+||+|+... ..+--..+|++|+|.|||.+|+|+++... +.+++
T Consensus 82 f~i~~~FR~e~~~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~i~~~~~~~~i~~~eaf~~~~g~~~~~~---~~~~~ 158 (306)
T PRK09350 82 FQICKSFRNEEAGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCEPAESLSYQQAFLRYLGIDPLSA---DKTQL 158 (306)
T ss_pred EEecceeecCCCCCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHHHHhcCCceEEEHHHHHHHHhCCCCCcC---CHHHH
Confidence 3 6677764110 00000258999999999999999986542 33555
Q ss_pred HHHHhCCC
Q psy11418 544 NKFLSDPN 551 (553)
Q Consensus 544 ~~~~~~~~ 551 (553)
..++.+.|
T Consensus 159 ~~~~~~~g 166 (306)
T PRK09350 159 REVAAKLG 166 (306)
T ss_pred HHHHHHcC
Confidence 55544443
No 81
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=99.58 E-value=1.4e-14 Score=121.78 Aligned_cols=79 Identities=34% Similarity=0.563 Sum_probs=69.8
Q ss_pred EEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc-----CCceeEee
Q psy11418 93 LSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-----KGELSIIP 167 (553)
Q Consensus 93 V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~-----~ge~~l~~ 167 (553)
|+|+|||+++|.+| +++|++|+|+++.+|++++.+.. .+ +.+..+.|+.||+|.|+|.+.+++ ++++||.+
T Consensus 2 V~i~Gwv~~~R~~g-~~~Fi~Lrd~~~~iQ~v~~~~~~--~~-~~~~~~~l~~~s~V~v~G~~~~~~~~~~~~~~~El~~ 77 (85)
T cd04100 2 VTLAGWVHSRRDHG-GLIFIDLRDGSGIVQVVVNKEEL--GE-FFEEAEKLRTESVVGVTGTVVKRPEGNLATGEIELQA 77 (85)
T ss_pred EEEEEEEehhccCC-CEEEEEEEeCCeeEEEEEECCcC--hH-HHHHHhCCCCCCEEEEEeEEEECCCCCCCCCCEEEEE
Confidence 89999999999999 79999999999999999987643 22 445678899999999999998765 78999999
Q ss_pred eeEEEecc
Q psy11418 168 KKLTLLSP 175 (553)
Q Consensus 168 ~~i~il~~ 175 (553)
+++++|++
T Consensus 78 ~~i~il~~ 85 (85)
T cd04100 78 EELEVLSK 85 (85)
T ss_pred eEEEEECC
Confidence 99999975
No 82
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=99.55 E-value=3.9e-14 Score=119.51 Aligned_cols=78 Identities=23% Similarity=0.319 Sum_probs=67.0
Q ss_pred EEEEEEEEEeeec-CCCceEEEEEEeCCE-EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC------Cce
Q psy11418 92 TLSVAGRVHAIRE-SGTKLMFYDLRGEGL-KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK------GEL 163 (553)
Q Consensus 92 ~V~v~Gri~~~R~-~g~kl~Fi~l~d~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~------ge~ 163 (553)
+|+|+|||+++|. +| +++|++|+|+++ .+||+++++. +.| +.++.|+.||+|.|+|.+.+++. |++
T Consensus 1 ~V~v~Gwv~~~R~~~~-~~~Fi~LrD~~g~~iQvv~~~~~----~~~-~~~~~l~~~s~V~V~G~v~~~~~~~~~~~~~~ 74 (86)
T cd04321 1 KVTLNGWIDRKPRIVK-KLSFADLRDPNGDIIQLVSTAKK----DAF-SLLKSITAESPVQVRGKLQLKEAKSSEKNDEW 74 (86)
T ss_pred CEEEEEeEeeEeCCCC-ceEEEEEECCCCCEEEEEECCCH----HHH-HHHhcCCCCcEEEEEEEEEeCCCcCCCCCCCE
Confidence 3899999999999 56 899999999999 7999997642 345 45677999999999999987764 999
Q ss_pred eEeeeeEEEecc
Q psy11418 164 SIIPKKLTLLSP 175 (553)
Q Consensus 164 ~l~~~~i~il~~ 175 (553)
||.++++++|++
T Consensus 75 Ei~~~~i~il~~ 86 (86)
T cd04321 75 ELVVDDIQTLNA 86 (86)
T ss_pred EEEEEEEEEecC
Confidence 999999999974
No 83
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.52 E-value=2.7e-14 Score=145.21 Aligned_cols=104 Identities=41% Similarity=0.664 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhHHHHHh-ccCcceEe-------
Q psy11418 425 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKST-HGSYKVTY------- 496 (553)
Q Consensus 425 l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel~~k~l-~~~~~~~~------- 496 (553)
|++||.++++||+||.++||+||+||+|+.++.|+.+.+|.+....+|.++||++|||||+|++ +++++++|
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR 80 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFR 80 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEeeecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEeccee
Confidence 4789999999999999999999999999987743343444443212499999999999999996 45555544
Q ss_pred --------cCCCCCCC---------------------------C-------CcccCCCCCceeeeHHHHHHHHh
Q psy11418 497 --------HPDGPESG---------------------------S-------PVEIDFTPPFRRLHMFPALEAAL 528 (553)
Q Consensus 497 --------~~e~~~~~---------------------------~-------~~~~~~~~~f~rit~~eA~~~~~ 528 (553)
.+||+++. . ....+++.||+||||.||++.+.
T Consensus 81 ~e~~~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~rit~~ea~~~~~ 154 (269)
T cd00669 81 NEDLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVLGVTAVTYGFELEDFGLPFPRLTYREALERYG 154 (269)
T ss_pred CCCCCCCcccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhccccccccccccccCCCceEeeHHHHHHHhC
Confidence 56666530 0 01235667999999999999995
No 84
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=99.51 E-value=1.2e-13 Score=115.26 Aligned_cols=77 Identities=25% Similarity=0.474 Sum_probs=67.3
Q ss_pred EEEEEEEEeeecCCCceEEEEEEeCCE--EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC--CceeEeee
Q psy11418 93 LSVAGRVHAIRESGTKLMFYDLRGEGL--KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK--GELSIIPK 168 (553)
Q Consensus 93 V~v~Gri~~~R~~g~kl~Fi~l~d~~~--~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~--ge~~l~~~ 168 (553)
|+|+|||+++|.+| +++|++|+|+++ .+|++++++.. .| +..+.|+.||+|.|+|.+.++++ |++||.++
T Consensus 2 v~v~Gwv~~~R~~g-~~~Fi~LrD~s~~~~lQvv~~~~~~----~~-~~~~~l~~gs~V~v~G~v~~~~~~~~~~El~~~ 75 (82)
T cd04318 2 VTVNGWVRSVRDSK-KISFIELNDGSCLKNLQVVVDKELT----NF-KEILKLSTGSSIRVEGVLVKSPGAKQPFELQAE 75 (82)
T ss_pred EEEEEeEEEEEcCC-cEEEEEEECCCCccCEEEEEeCccc----CH-HHHhcCCCceEEEEEEEEEeCCCCCCCEEEEEE
Confidence 79999999999999 899999999997 59999987642 23 45678999999999999988765 99999999
Q ss_pred eEEEecc
Q psy11418 169 KLTLLSP 175 (553)
Q Consensus 169 ~i~il~~ 175 (553)
++++++.
T Consensus 76 ~i~il~~ 82 (82)
T cd04318 76 KIEVLGE 82 (82)
T ss_pred EEEEecC
Confidence 9999863
No 85
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=99.50 E-value=1.6e-13 Score=115.16 Aligned_cols=79 Identities=25% Similarity=0.368 Sum_probs=67.8
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc-----CCceeEe
Q psy11418 92 TLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-----KGELSII 166 (553)
Q Consensus 92 ~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~-----~ge~~l~ 166 (553)
.|+|+|||+++|.+| +++|++|||+++.+|++++.+.. .+ | +.++.|+.||+|.|+|++.+++ .+++||.
T Consensus 1 ~V~v~Gwv~~~R~~g-~~~Fi~LrD~~~~iQ~v~~~~~~--~~-~-~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~Ei~ 75 (84)
T cd04323 1 RVKVFGWVHRLRSQK-KLMFLVLRDGTGFLQCVLSKKLV--TE-F-YDAKSLTQESSVEVTGEVKEDPRAKQAPGGYELQ 75 (84)
T ss_pred CEEEEEEEEEEecCC-CcEEEEEEcCCeEEEEEEcCCcc--hh-H-HHHhcCCCcCEEEEEEEEEECCcccCCCCCEEEE
Confidence 389999999999998 99999999999999999986542 22 4 4567899999999999998764 5679999
Q ss_pred eeeEEEecc
Q psy11418 167 PKKLTLLSP 175 (553)
Q Consensus 167 ~~~i~il~~ 175 (553)
++++++|++
T Consensus 76 ~~~i~vl~~ 84 (84)
T cd04323 76 VDYLEIIGE 84 (84)
T ss_pred EEEEEEEcC
Confidence 999999974
No 86
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.32 E-value=5.8e-12 Score=133.81 Aligned_cols=136 Identities=18% Similarity=0.355 Sum_probs=101.8
Q ss_pred CCcchhhcccchhhhccHHHHHHHHH-----HHHHHHHHHHHhhhCCeEEEecceecccc-----CCCCCcceeeccCCC
Q psy11418 188 KDKETRFRQRYLDLMINERIRHKFIV-----RAQIIAYVRRYLDSLGFLEVETPMMNMIA-----GGATAKPFVTHHNDL 257 (553)
Q Consensus 188 ~~~e~r~~~R~ldl~~~~~~~~~~~~-----rs~i~~~ir~fl~~~gF~EV~TPil~~~~-----gga~a~~F~t~~~~~ 257 (553)
.+.|+++++| +++.+++++.+ .+.+.+++|++|...||.||.||+|...+ |.....++....-..
T Consensus 180 ~~~e~~l~~r-----r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~i 254 (417)
T PRK09537 180 KELESELVSR-----RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRV 254 (417)
T ss_pred hhHHHHHHHh-----cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheee
Confidence 3456777777 58999999999 99999999999999999999999996321 100001111111113
Q ss_pred Ccceeee--eCHHHHHHHHH----HccCCcEEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 258 NMDLYMR--IAPELYLKMLV----VGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 258 ~~~~~L~--~Spql~lk~l~----~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
+...+|| ..|.|+..... ...--|+|+||+|||+|..+.+|++||+|++++..+. ++.|++.++++++..+
T Consensus 255 deel~LRpsLtPsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~~L 333 (417)
T PRK09537 255 DKNFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSGCTRENLENIIDDFLKHL 333 (417)
T ss_pred CCceEehhhhHHHHHHHHHhhhhcccCCeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCchHHHHHHHHHHHHHHHC
Confidence 5578999 56777664310 0112389999999999998889999999999999876 4889999999999887
No 87
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=99.13 E-value=7.2e-11 Score=103.82 Aligned_cols=90 Identities=48% Similarity=0.666 Sum_probs=75.5
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCCh
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK 404 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~ 404 (553)
|-.+.++.+.+|++++.... ..+.|..+.+.|+.||+|.|+|.+.++++|++||.+++++|+++|..++|++.++..+.
T Consensus 19 Fi~lrd~~~~lQ~v~~~~~~-~~~~~~~~~~~l~~g~~V~v~G~v~~~~~g~~El~~~~~~ils~~~~plP~~~~~~~~~ 97 (108)
T cd04322 19 FADLQDESGKIQVYVNKDDL-GEEEFEDFKKLLDLGDIIGVTGTPFKTKTGELSIFVKEFTLLSKSLRPLPEKFHGLTDV 97 (108)
T ss_pred EEEEEECCeEEEEEEECCCC-CHHHHHHHHhcCCCCCEEEEEEEEEecCCCCEEEEeCEeEEeeccCCCCCCCccCcCCh
Confidence 44566788889998876433 23455555555999999999999999999999999999999999998899988888889
Q ss_pred hhhccccceee
Q psy11418 405 ETRFRQRYLDL 415 (553)
Q Consensus 405 e~~~~~R~L~l 415 (553)
++++++||||+
T Consensus 98 ~~r~~~R~ldl 108 (108)
T cd04322 98 ETRYRQRYLDL 108 (108)
T ss_pred hheeecccccC
Confidence 99999999986
No 88
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.12 E-value=2e-10 Score=111.18 Aligned_cols=116 Identities=34% Similarity=0.466 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhhhCCeEEEecceecccc----CCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHc----cCCcEEE
Q psy11418 213 VRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG----GLDRVYE 284 (553)
Q Consensus 213 ~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~----g~~rVfe 284 (553)
+|+.+.+.+|++|.+.||.||.||++.+.+ .+..........+..+...+||.|+...+.+.+.. .--|+||
T Consensus 1 ~~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfe 80 (211)
T cd00768 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAE 80 (211)
T ss_pred CHHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEE
Confidence 367889999999999999999999996431 11111112222334566789999999999887764 3459999
Q ss_pred EccccccCCCCC--CccCCcceeeeEeccCC------HHHHHHHHHHHHhcc
Q psy11418 285 VGRQFRNEGIDL--THNPEFTTCEFYMAYAD------YNDLMHLTEDLISGR 328 (553)
Q Consensus 285 i~~~FR~E~~~~--~H~~EFt~lE~e~a~~~------~~~~m~~~e~li~~~ 328 (553)
||+|||+|.... +|+.||+|+++++.+.+ +.+++.++++++..+
T Consensus 81 ig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~l 132 (211)
T cd00768 81 IGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRAL 132 (211)
T ss_pred EcceeecCCCccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHc
Confidence 999999997665 78999999999999864 588999999998877
No 89
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=99.05 E-value=2.3e-09 Score=86.92 Aligned_cols=75 Identities=37% Similarity=0.575 Sum_probs=64.3
Q ss_pred EEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEE
Q psy11418 93 LSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTL 172 (553)
Q Consensus 93 V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~i 172 (553)
|+|+|||.+++..|++++|++|.|+++.+|+++..+ .+......|..||+|.|+|.+...+.++++|.++++++
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg~i~~~~~~~------~~~~~~~~l~~g~~v~v~G~v~~~~~~~~~l~~~~i~~ 74 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTGSIQVVFFNE------EYERFREKLKEGDIVRVRGKVKRYNGGELELIVPKIEI 74 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETH------HHHHHHHTS-TTSEEEEEEEEEEETTSSEEEEEEEEEE
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCccEEEEEccH------HhhHHhhcCCCCeEEEEEEEEEEECCccEEEEECEEEE
Confidence 789999999954445999999999999999999872 23356788999999999999999888889999999987
Q ss_pred e
Q psy11418 173 L 173 (553)
Q Consensus 173 l 173 (553)
|
T Consensus 75 l 75 (75)
T PF01336_consen 75 L 75 (75)
T ss_dssp E
T ss_pred C
Confidence 6
No 90
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh
Probab=98.93 E-value=1.2e-09 Score=99.84 Aligned_cols=90 Identities=22% Similarity=0.302 Sum_probs=71.1
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccC---------CCCceeEEeeeEEEEeccCCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---------KKGELSIIPKKLTLLSPCLHMLP 395 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~---------~~g~~El~~~~i~vl~~~~~~~P 395 (553)
|..+-++.+.+|++++.... ++ +.+++.|+.||+|.|+|.+.+. .+|++||.++++++|++| .++|
T Consensus 34 Fi~LrD~~g~~Q~v~~~~~~---~~-~~~~~~l~~gs~V~V~G~~~~~~~~~~~~~~~~~~~El~~~~i~vl~~~-~~lP 108 (135)
T cd04317 34 FIDLRDRYGIVQVVFDPEEA---PE-FELAEKLRNESVIQVTGKVRARPEGTVNPKLPTGEIEVVASELEVLNKA-KTLP 108 (135)
T ss_pred EEEEecCCeeEEEEEeCCch---hH-HHHHhCCCCccEEEEEEEEECCCccccCCCCCCCcEEEEEeEEEEEECC-CCCC
Confidence 44566677788888765321 22 4677899999999999998764 357899999999999999 6899
Q ss_pred ccccC--CCChhhhccccceeeecChH
Q psy11418 396 HMHFG--VKDKETRFRQRYLDLMINER 420 (553)
Q Consensus 396 ~~~~~--~~~~e~~~~~R~L~lR~~~~ 420 (553)
+...+ ..+.++++++|||||| +|.
T Consensus 109 ~~~~~~~~~~~~~r~~~R~LdLR-~~~ 134 (135)
T cd04317 109 FEIDDDVNVSEELRLKYRYLDLR-RPK 134 (135)
T ss_pred CccccccCCCHHHhhhcceeecC-CCC
Confidence 87754 3478999999999999 654
No 91
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=98.92 E-value=6e-09 Score=110.87 Aligned_cols=112 Identities=21% Similarity=0.373 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHhhhCCeEEEecceecccc-----CCCCC-----cceeeccCCCCcceeee--eCHHHHHHHHH----
Q psy11418 212 IVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-----GGATA-----KPFVTHHNDLNMDLYMR--IAPELYLKMLV---- 275 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~-----gga~a-----~~F~t~~~~~~~~~~L~--~Spql~lk~l~---- 275 (553)
.-.+.+.+.+|++|...||.||.||+|...+ +.... ..|. ++...+|| +.|+|+.-...
T Consensus 240 ~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk-----~ee~lvLRPdLTPsLaR~La~N~~~ 314 (453)
T TIGR02367 240 DYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR-----VDKNFCLRPMLAPNLYNYLRKLDRA 314 (453)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceE-----ecCceEecccCHHHHHHHHHHhhhh
Confidence 4567889999999999999999999995211 11001 2222 34568999 77887743211
Q ss_pred HccCCcEEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 276 VGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 276 ~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
...-.|+|+||+|||+|..+.+|+.||+|++++.+.. ++.|+..++.+++..+
T Consensus 315 l~~PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG~~atfaDlealL~e~Lr~L 369 (453)
T TIGR02367 315 LPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLEAIIKDFLDHL 369 (453)
T ss_pred ccCCeeEEEEcCeEecCCCCCCCcCeEEEEEEEEECCCCCHHHHHHHHHHHHHHC
Confidence 1112399999999999999999999999999999876 5999998888888777
No 92
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=98.70 E-value=1.3e-07 Score=96.00 Aligned_cols=127 Identities=18% Similarity=0.252 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHhhhCCeEEEecceecccc----C-C--CCCcceeeccCCCCcceeeeeCHHHHHHHHHHcc-----C
Q psy11418 212 IVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----G-G--ATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG-----L 279 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----g-g--a~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g-----~ 279 (553)
+.|..+.+.+++.|.++||.||.||++.+.+ + + ...+.|.. .+..|..+.||.-.....-++++.. .
T Consensus 3 ~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~-~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~~ 81 (261)
T cd00773 3 ALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRF-KDKGGRDLALRPDLTAPVARAVAENLLSLPL 81 (261)
T ss_pred HHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEE-ECCCCCEEEeCCCCcHHHHHHHHhcCccCCC
Confidence 5788999999999999999999999996421 1 1 12234432 2334678999977666666655532 2
Q ss_pred -CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCccccccc
Q psy11418 280 -DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANA 341 (553)
Q Consensus 280 -~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~ 341 (553)
-|+|++|+|||+|.....|..||+|+++|+-..+ ..|++.++.++++.+ ++....+..|.
T Consensus 82 p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~~~~~daE~i~l~~~~l~~l--g~~~~~i~l~~ 146 (261)
T cd00773 82 PLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSDSPLADAEVIALAVEILEAL--GLKDFQIKINH 146 (261)
T ss_pred CeEEEEEcCEEecCCCCCCCccceEEeceeeeCCCChHHHHHHHHHHHHHHHHc--CCCceEEEECC
Confidence 3999999999999988889999999999987664 346778887777777 34445555554
No 93
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=98.67 E-value=3.6e-08 Score=85.97 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=67.0
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC--CCceeEEeeeEEEEeccCCCCCccccCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSIIPKKLTLLSPCLHMLPHMHFGVK 402 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~--~g~~El~~~~i~vl~~~~~~~P~~~~~~~ 402 (553)
|..+-++.+.+|++++.. . .++++..+++|+.||+|.|+|.+.+++ .+++||.+++++++++|. ++|+... .
T Consensus 19 Fi~lrD~~g~iQ~v~~~~-~--~~~~~~~~~~l~~~s~v~V~G~v~~~~~~~~~~Ei~~~~i~vl~~a~-~~pi~~~--~ 92 (103)
T cd04319 19 FIVLRDSTGIVQAVFSKD-L--NEEAYREAKKVGIESSVIVEGAVKADPRAPGGAEVHGEKLEIIQNVE-FFPITED--A 92 (103)
T ss_pred EEEEecCCeeEEEEEeCC-C--CHHHHHHHhCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEEEecCC-CCccCCC--C
Confidence 445667778889888653 1 245566778899999999999997765 678999999999999996 7887754 3
Q ss_pred Chhhhccccce
Q psy11418 403 DKETRFRQRYL 413 (553)
Q Consensus 403 ~~e~~~~~R~L 413 (553)
++++++++|||
T Consensus 93 ~~~~~~~~rhL 103 (103)
T cd04319 93 SDEFLLDVRHL 103 (103)
T ss_pred CHHHHhhccCC
Confidence 89999999997
No 94
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.62 E-value=2.3e-07 Score=91.77 Aligned_cols=108 Identities=25% Similarity=0.358 Sum_probs=79.4
Q ss_pred HHHHHHHHHhhhCCeEEEecceeccccCCC--CC-----------cceeeccCCCCcceeeeeC--HHHHHHHHHHc--c
Q psy11418 216 QIIAYVRRYLDSLGFLEVETPMMNMIAGGA--TA-----------KPFVTHHNDLNMDLYMRIA--PELYLKMLVVG--G 278 (553)
Q Consensus 216 ~i~~~ir~fl~~~gF~EV~TPil~~~~gga--~a-----------~~F~t~~~~~~~~~~L~~S--pql~lk~l~~~--g 278 (553)
.+.+.+|++|...||.||.|+.+.+..... .. .++... |-. .-+||.| |.|. + .++. .
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~-NP~--~~~LR~sLlp~LL-~-~l~~N~~ 79 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYIN-DPA--RLLLRTHTSAVQA-R-ALAKLKP 79 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEEC-CCc--eEEEeccCcHHHH-H-HHHhcCC
Confidence 456778999999999999999996542110 00 111111 111 3678866 4554 3 3344 4
Q ss_pred CCcEEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 279 LDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 279 ~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
--|+||||+|||++..+..|+|||+|+++..++. |+.|++..+|.++..+
T Consensus 80 ~~~lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l 131 (218)
T cd00496 80 PIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKEL 131 (218)
T ss_pred CeeEEEEcCeEECCCCCCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 5599999999999877778999999999999988 9999999999999877
No 95
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=98.61 E-value=1.9e-07 Score=93.98 Aligned_cols=114 Identities=22% Similarity=0.271 Sum_probs=81.7
Q ss_pred HHHHHHHHHhhhCCeEEEecceeccc---------cCCC----CCcceeeccCCC--CcceeeeeCHHHHHHHHHH---c
Q psy11418 216 QIIAYVRRYLDSLGFLEVETPMMNMI---------AGGA----TAKPFVTHHNDL--NMDLYMRIAPELYLKMLVV---G 277 (553)
Q Consensus 216 ~i~~~ir~fl~~~gF~EV~TPil~~~---------~gga----~a~~F~t~~~~~--~~~~~L~~Spql~lk~l~~---~ 277 (553)
.+.+.+|++|...||.||.+|.+.+. +..- ..+.|......- +...-||...--.+-+.+. .
T Consensus 21 ~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l~~~~~ 100 (247)
T PF01409_consen 21 KFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTLNKHRP 100 (247)
T ss_dssp HHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHHTTTSH
T ss_pred HHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHHHHhcC
Confidence 45688999999999999999999431 1111 122343322222 5677888643333333331 1
Q ss_pred cCCcEEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhccc
Q psy11418 278 GLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGRK 329 (553)
Q Consensus 278 g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~~ 329 (553)
.--|+|+||+|||+|..|.+|+|+|+|+|.-.+.. ++.++..+++.++++++
T Consensus 101 ~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lf 154 (247)
T PF01409_consen 101 PPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELF 154 (247)
T ss_dssp SSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHH
T ss_pred CCeEEEecCceEecCCcccccCccceeEeeEEEecccchhHHHHHHHHHHHHHh
Confidence 22499999999999999999999999999998876 69999999999999995
No 96
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=2.4e-07 Score=99.61 Aligned_cols=134 Identities=20% Similarity=0.261 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc------cCCCC---CcceeeccCCCCcceeeeeCHHHHHHHHHHcc--
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI------AGGAT---AKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG-- 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~------~gga~---a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g-- 278 (553)
-+..|..|...+|+.+.+.||.||.||++-.. .|..+ .+...+..+.-|..+.||.-..-..-|+++..
T Consensus 17 d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~Tapv~R~~~en~~ 96 (429)
T COG0124 17 DMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELTAPVARAVAENKL 96 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecccCcHHHHHHHHhccc
Confidence 45688899999999999999999999999321 23321 13334445667889999966666666666533
Q ss_pred -C---CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCccccccccccc
Q psy11418 279 -L---DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANARMYQ 345 (553)
Q Consensus 279 -~---~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~~ 345 (553)
. -|.|.+|||||.|.....+.-||+||++|..+.+ ..|++.++-+++..+ ++...++..|.+...
T Consensus 97 ~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~l--Gi~~~~l~iN~~g~l 169 (429)
T COG0124 97 DLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEAL--GIGGFTLEINSRGIL 169 (429)
T ss_pred cccCCeeEEEecceecCCCCCCCCceeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHc--CCCcEEEEEcCcccH
Confidence 1 3999999999999999999999999999998873 788999999999999 888888999987663
No 97
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=98.54 E-value=4.2e-07 Score=97.63 Aligned_cols=133 Identities=16% Similarity=0.205 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceeccc-----cCCCC-----CcceeeccCCCCcceeeeeCHHHHHHHHHHcc
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI-----AGGAT-----AKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG 278 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-----~gga~-----a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g 278 (553)
.-.+.+..+...+++.|.++||.||.||++... .+|.. .+.|.. .+.-|..+.||.-.....-++++..
T Consensus 12 ~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~-~d~~g~~l~LRpD~T~~iaR~~~~~ 90 (397)
T TIGR00442 12 EEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTF-KDKGGRSLTLRPEGTAPVARAVIEN 90 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEE-ECCCCCEEeecCCCcHHHHHHHHhc
Confidence 345788899999999999999999999999532 11221 123332 2345678889977666666655432
Q ss_pred ------CCcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCcccccccccc
Q psy11418 279 ------LDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANARMY 344 (553)
Q Consensus 279 ------~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~ 344 (553)
--|+|++|+|||+|..+..|..||+|+++|....+ ..|++.++.+++..+ ++..+++..|.+.+
T Consensus 91 ~~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~~~~~d~E~i~l~~e~l~~l--g~~~~~i~i~~~~i 164 (397)
T TIGR00442 91 KLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEIIALAAEILKEL--GIKDFTLEINSLGI 164 (397)
T ss_pred ccccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCCCHHHHHHHHHHHHHHHHHc--CCCceEEEecCccc
Confidence 14999999999999988888999999999987764 248888888888888 66667777777654
No 98
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=98.51 E-value=1.2e-06 Score=83.31 Aligned_cols=114 Identities=23% Similarity=0.323 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhh-hCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHcc-----
Q psy11418 213 VRAQIIAYVRRYLD-SLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG----- 278 (553)
Q Consensus 213 ~rs~i~~~ir~fl~-~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g----- 278 (553)
++++|++.+++.+. +.||.||.||+|.+.. .|- ....|... +.-+.+++|+-+.+..+-.++...
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~-~~~~~~~~L~pt~~~~~~~~~~~~~~~~~ 79 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVK-DRGDEEYCLRPTSEPGIYSLFKNEIRSSY 79 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEE-ETTTEEEEE-SSSHHHHHHHHHHHEEBHG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeee-ecccccEEeccccccceeeeecceeeecc
Confidence 47889999999999 9999999999996421 111 12344432 233467999987765554443321
Q ss_pred --CC-cEEEEccccccCCCCC---CccCCcceeeeEeccCCHHHHHHHHHHHHhcc
Q psy11418 279 --LD-RVYEVGRQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 279 --~~-rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~ 328 (553)
++ |+|++|+|||+|...+ .++-||+|.|++....+ ++..+..++++..+
T Consensus 80 ~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~~~~~ 134 (173)
T PF00587_consen 80 RDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEELLELY 134 (173)
T ss_dssp GGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHHHHHH
T ss_pred ccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHHHHHH
Confidence 22 8999999999995433 59999999999998887 66666666665444
No 99
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.49 E-value=5.9e-07 Score=89.07 Aligned_cols=116 Identities=19% Similarity=0.305 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHhhhCCeEEEecceecccc----CC--C--CCcceeeccCCC----CcceeeeeCHHHHHHHHHHcc-
Q psy11418 212 IVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GG--A--TAKPFVTHHNDL----NMDLYMRIAPELYLKMLVVGG- 278 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gg--a--~a~~F~t~~~~~----~~~~~L~~Spql~lk~l~~~g- 278 (553)
+++..|.+.+++.|.+.||.||.||+|.+.. +| . ....|... +.- +..++||...+...-++++.-
T Consensus 3 ~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~LrP~~~~~i~~~~~~~~ 81 (235)
T cd00670 3 ALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFE-DKGRELRDTDLVLRPAACEPIYQIFSGEI 81 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeec-cCcccccCCeEEEecCCCHHHHHHHhccC
Confidence 5788999999999999999999999996422 22 1 11223221 111 567899977666655544432
Q ss_pred -----C-CcEEEEccccccCCCC---CCccCCcceeeeEeccCC------HHHHHHHHHHHHhcc
Q psy11418 279 -----L-DRVYEVGRQFRNEGID---LTHNPEFTTCEFYMAYAD------YNDLMHLTEDLISGR 328 (553)
Q Consensus 279 -----~-~rVfei~~~FR~E~~~---~~H~~EFt~lE~e~a~~~------~~~~m~~~e~li~~~ 328 (553)
+ -|+|++|+|||+|... ..+..||+|.|++....+ ..++++++.+++..+
T Consensus 82 ~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~l 146 (235)
T cd00670 82 LSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIAREL 146 (235)
T ss_pred ccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 2 2899999999999887 357889999999997765 567777777777666
No 100
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=98.47 E-value=9.8e-07 Score=95.92 Aligned_cols=132 Identities=14% Similarity=0.112 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecc------ccCCCC----CcceeeccCCCCcceeeeeCHHHHHHHHHHcc-
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNM------IAGGAT----AKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG- 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~------~~gga~----a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g- 278 (553)
-...|..+.+.+++.|..+||.||.||++-. ..|+.. .+.|.. .+.-|..+.||.-.....-+.++..
T Consensus 17 ~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~-~d~~g~~l~LRpd~T~~iaR~~~~~~ 95 (430)
T CHL00201 17 EINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRF-TDRSNRDITLRPEGTAGIVRAFIENK 95 (430)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEE-EcCCCCEEEeCCCCcHHHHHHHHHcc
Confidence 3457889999999999999999999999942 112221 234432 2334678899977777777754332
Q ss_pred -----CC-cEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCcccccccccc
Q psy11418 279 -----LD-RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANARMY 344 (553)
Q Consensus 279 -----~~-rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~ 344 (553)
.. |.|++|+|||+|.+.....-||+|+++|.-+.+ -.|++.++-+.++.+ ++...++..|.+.+
T Consensus 96 ~~~~~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~l--Gl~~~~i~l~~~~~ 169 (430)
T CHL00201 96 MDYHSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSIDARADTEVIHLAMQIFNEL--QVKNLILDINSIGK 169 (430)
T ss_pred ccccCCCeEEEEEcceecCCCCcCCccceeEEeceEEECCCChhhHHHHHHHHHHHHHHc--CCCceEEEECCCCc
Confidence 22 999999999999998888899999999987763 358999999999888 67777777776443
No 101
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.44 E-value=8.4e-07 Score=95.28 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceeccc------cCCC-CCcceeeccCC-CCcceeeeeCHHHHHHHHHHccC-
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI------AGGA-TAKPFVTHHND-LNMDLYMRIAPELYLKMLVVGGL- 279 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~------~gga-~a~~F~t~~~~-~~~~~~L~~Spql~lk~l~~~g~- 279 (553)
.-...|..+...+++.|..+||.||.||++... .|+. ..+.|.. .+. -|..+.||.-....+-|+++..+
T Consensus 15 ~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f-~d~~~g~~l~LRpD~T~~iaR~~a~~~~ 93 (391)
T PRK12292 15 EEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKL-VDQLSGRTLGLRPDMTAQIARIAATRLA 93 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEE-eecCCCCEEEECCCCcHHHHHHHHHhcc
Confidence 344678899999999999999999999999421 1212 1234432 233 46788999877777777766432
Q ss_pred -----CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCcccccccccc
Q psy11418 280 -----DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANARMY 344 (553)
Q Consensus 280 -----~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~ 344 (553)
-|+|++|+|||.|.....+.-||+|+++|.-+.+ --|++.++-+.+..+ ++...++..|.+.+
T Consensus 94 ~~~~p~r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~l--gl~~~~i~i~~~~i 165 (391)
T PRK12292 94 NRPGPLRLCYAGNVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKAL--GLPNFTLDLGHVGL 165 (391)
T ss_pred CCCCCeEEEeeceeeecCCCcCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHc--CCCCeEEEeccHHH
Confidence 2899999999999998889999999999997663 478999999999888 55567777776543
No 102
>PLN02972 Histidyl-tRNA synthetase
Probab=98.41 E-value=1.3e-06 Score=99.31 Aligned_cols=133 Identities=14% Similarity=0.222 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceeccc------cCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHcc---C
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI------AGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG---L 279 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~------~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g---~ 279 (553)
.-...|..|...+++.|..+||.||+||++-.. .|......|. ..+.-|..+.||.-.....-|+++.. -
T Consensus 339 ~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~-f~D~gGr~LaLRPDlTvPiAR~vA~n~~~p 417 (763)
T PLN02972 339 EQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYD-LADQGGELCSLRYDLTVPFARYVAMNGITS 417 (763)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEE-EECCCCCEEEeCCCChHHHHHHHHhCCCCc
Confidence 456789999999999999999999999999431 2222222332 23455778899988888888877643 2
Q ss_pred CcEEEEccccccCCCCCCccCCcceeeeEeccC-C----HHHHHHHHHHHHhcccccCCCcccccccccc
Q psy11418 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA-D----YNDLMHLTEDLISGRKEDRNRPCVMANARMY 344 (553)
Q Consensus 280 ~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~-~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~ 344 (553)
-|.|+||++||.|.....+..||+||++|..+. + -.|++.++-+.+..+ ++...++..|.+.+
T Consensus 418 ~KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~L--Gi~df~I~INh~~i 485 (763)
T PLN02972 418 FKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDEL--DIGTYEVKLNHRKL 485 (763)
T ss_pred ceEEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHhC--CCCceEEEeCCHHH
Confidence 388999999999998888999999999999875 2 578999999999888 67777888887655
No 103
>PLN02530 histidine-tRNA ligase
Probab=98.39 E-value=1.4e-06 Score=96.10 Aligned_cols=132 Identities=14% Similarity=0.164 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc------cCCCCC-cceeeccCCCCcceeeeeCHHHHHHHHHHccC---
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI------AGGATA-KPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL--- 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~------~gga~a-~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~--- 279 (553)
-...|..|...+++.|..+||.||.||++... .|+... +.|. ..+.-|..+-||.-.....-|+++...
T Consensus 83 ~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~-f~D~~g~~l~LRpD~T~~iaR~~~~~~~~~ 161 (487)
T PLN02530 83 DMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYN-FEDKGGRRVALRPELTPSLARLVLQKGKSL 161 (487)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEE-EECCCCCEEecCCCCcHHHHHHHHhccccc
Confidence 35678899999999999999999999999531 232222 2332 234457788999887777777766432
Q ss_pred ---CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCC--Ccccccccccc
Q psy11418 280 ---DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRN--RPCVMANARMY 344 (553)
Q Consensus 280 ---~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~--~iqv~~n~r~~ 344 (553)
-|.|++|+|||.|.....+.-||+|+++|.-+.+ ..|++.++-+.+..+ ++. ..++..|.+.+
T Consensus 162 ~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~~l--gl~~~~~~i~i~~~~i 233 (487)
T PLN02530 162 SLPLKWFAIGQCWRYERMTRGRRREHYQWNMDIIGVPGVEAEAELLAAIVTFFKRV--GITSSDVGIKVSSRKV 233 (487)
T ss_pred CCCeEEEEEcCEEcCcCCCCCCccceEEcCeeEeCCCCcchhHHHHHHHHHHHHHc--CCCCCceEEEEcCHHH
Confidence 2899999999999988888999999999987653 568888888888877 554 46677776543
No 104
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=98.37 E-value=5.1e-06 Score=84.58 Aligned_cols=121 Identities=15% Similarity=0.115 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHhhhCCeEEEecceeccc----cCCCC-----CcceeeccCCCC----cceeeeeCHHHHHHHHHHcc
Q psy11418 212 IVRAQIIAYVRRYLDSLGFLEVETPMMNMI----AGGAT-----AKPFVTHHNDLN----MDLYMRIAPELYLKMLVVGG 278 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~gga~-----a~~F~t~~~~~~----~~~~L~~Spql~lk~l~~~g 278 (553)
+++.+|.+.+++.+.+.||.||.||+|.+. ..|.. .+.|... +.-+ .+++||...+..+-.+...-
T Consensus 33 ~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~-~~~~~~~~~~l~LrPt~e~~~~~~~~~~ 111 (264)
T cd00772 33 AILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFK-DAGDEELEEDFALRPTLEENIGEIAAKF 111 (264)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEE-eCCCCccCceEEECCCCCHHHHHHHHhh
Confidence 578899999999999999999999999642 12221 1224332 1222 67999977665544443322
Q ss_pred ------CC-cEEEEccccccCCCCCC---ccCCcceeeeEeccCCHHHHHHHHHHHH---hcccccCC
Q psy11418 279 ------LD-RVYEVGRQFRNEGIDLT---HNPEFTTCEFYMAYADYNDLMHLTEDLI---SGRKEDRN 333 (553)
Q Consensus 279 ------~~-rVfei~~~FR~E~~~~~---H~~EFt~lE~e~a~~~~~~~m~~~e~li---~~~~~~~~ 333 (553)
+. |+|++++|||.|..+++ +..||+|.|.+....+.++.....+.++ ..+++.++
T Consensus 112 i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~~~i~~~l~ 179 (264)
T cd00772 112 IKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAEIARDLA 179 (264)
T ss_pred hhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 23 99999999999965543 7889999999987788777777777766 44444444
No 105
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=98.37 E-value=1.2e-06 Score=90.42 Aligned_cols=113 Identities=23% Similarity=0.318 Sum_probs=78.6
Q ss_pred HHHHHHHHHhhhCCeEEEecceeccccC--CCCC----cceeeccC--CCCcceeeeeCHHHHHHHHHHccC---CcEEE
Q psy11418 216 QIIAYVRRYLDSLGFLEVETPMMNMIAG--GATA----KPFVTHHN--DLNMDLYMRIAPELYLKMLVVGGL---DRVYE 284 (553)
Q Consensus 216 ~i~~~ir~fl~~~gF~EV~TPil~~~~g--ga~a----~~F~t~~~--~~~~~~~L~~Spql~lk~l~~~g~---~rVfe 284 (553)
.+.+.+|++|...||.|+.||.+.+... .+-. .|-....+ +......||.|.---+=+.+.... -|+||
T Consensus 76 ~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~d~~vLRtsl~p~ll~~l~~N~~~pirlFE 155 (294)
T TIGR00468 76 RVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIKDRLLLRTHTTAVQLRTMEENEKPPIRIFS 155 (294)
T ss_pred HHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeecCCcceecccHHHHHHHHHhcCCCCceEEE
Confidence 3456789999999999999999965311 0000 00000001 112345688664333333344444 39999
Q ss_pred EccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 285 VGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 285 i~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
||+|||++..+.+|+|||+|++.-+... |+.|+...+|.++..+
T Consensus 156 iGrVfr~d~~d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~l 201 (294)
T TIGR00468 156 PGRVFRNDTVDATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKKM 201 (294)
T ss_pred ecceEEcCCCCCccCChhhEEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 9999999988889999999999998754 8999999999999877
No 106
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=98.36 E-value=1.8e-06 Score=94.07 Aligned_cols=49 Identities=27% Similarity=0.449 Sum_probs=45.0
Q ss_pred CcEEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 280 ~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
-|+|.||+|||+|..|++|+|||+|+|...... ++.+++.++.++++.+
T Consensus 358 ~k~fsigrVfR~d~~DatH~~eFhQ~Eg~vi~~~~s~~~L~~~l~~f~~~l 408 (494)
T PTZ00326 358 KKYFSIDRVFRNETLDATHLAEFHQVEGFVIDRNLTLGDLIGTIREFFRRI 408 (494)
T ss_pred ceEEecCCEecCCCCCCCcCceeEEEEEEEEeCCCCHHHHHHHHHHHHHhc
Confidence 499999999999999999999999999998876 5889999999888877
No 107
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=98.34 E-value=2.8e-06 Score=91.68 Aligned_cols=125 Identities=15% Similarity=0.210 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc------cCCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHcc-
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI------AGGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG- 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~------~gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g- 278 (553)
-.+.+..+...+++.|.++||.||.||++... .|.. ..+.|.. .+.-|..+.||.-.....-+.++..
T Consensus 17 ~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~-~d~~g~~l~LRpd~T~~~ar~~~~~~ 95 (412)
T PRK00037 17 ESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTF-QDKGGRSLTLRPEGTAPVVRAVIEHK 95 (412)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEE-EcCCCCEEEecCCCcHHHHHHHHhCC
Confidence 44678889999999999999999999999531 1222 1233432 2335778889976555555554432
Q ss_pred --CCcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCccc
Q psy11418 279 --LDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCV 337 (553)
Q Consensus 279 --~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv 337 (553)
--|+|++|+|||+|..+..|..||+|+++|.-..+ ..|++.++.+++..+ ++...++
T Consensus 96 ~~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~l~~l--g~~~~~~ 158 (412)
T PRK00037 96 LQPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEVIALAADILKAL--GLKGLKL 158 (412)
T ss_pred CCCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCCCcchhHHHHHHHHHHHHHc--CCCceee
Confidence 34999999999999988889999999999987653 367888888888777 4444433
No 108
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=98.33 E-value=3.3e-06 Score=88.09 Aligned_cols=132 Identities=17% Similarity=0.166 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc-----cCCC-CCcceeeccCCCCcceeeeeCHHHHHHHHHHc---c--
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI-----AGGA-TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG---G-- 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-----~gga-~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~---g-- 278 (553)
-.+.+..+...+++.|.++||.||+||++... .+|. ..+.|.. .+.-|..+.||.-.....-+.++. +
T Consensus 7 ~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~-~d~~g~~l~LRpD~T~~iaR~~~~~~~~~~ 85 (314)
T TIGR00443 7 EAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKL-FDSLGRVLGLRPDMTTPIARAVSTRLRDRP 85 (314)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEE-ECCCCCEEeecCcCcHHHHHHHHHhcccCC
Confidence 35678999999999999999999999999532 1212 2344433 233477888996555555555443 2
Q ss_pred -CCcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCcccccccccc
Q psy11418 279 -LDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANARMY 344 (553)
Q Consensus 279 -~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~ 344 (553)
--|+|++|+|||.|.....+.-||+|+++|.-..+ -.|++.++-+.+..+ ++...++..|...+
T Consensus 86 ~p~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~l--g~~~~~i~l~~~~i 154 (314)
T TIGR00443 86 LPLRLCYAGNVFRTNESGAGRSREFTQAGVELIGAGGPAADAEVIALLIEALKAL--GLKDFKIELGHVGL 154 (314)
T ss_pred CCeEEEEeceEeecCCCcCCCcccccccceEEeCCCCchhHHHHHHHHHHHHHHc--CCCCeEEEeCcHHH
Confidence 24999999999999998889999999999986653 458888888888887 56666676666443
No 109
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=98.32 E-value=3e-06 Score=93.59 Aligned_cols=117 Identities=22% Similarity=0.343 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhhhCCeEEEecceeccc-------------cCCCCCcceeecc------------------------
Q psy11418 212 IVRAQIIAYVRRYLDSLGFLEVETPMMNMI-------------AGGATAKPFVTHH------------------------ 254 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-------------~gga~a~~F~t~~------------------------ 254 (553)
..+..+++.+|+.|...||.|++||++.+. |.-...+.|....
T Consensus 233 ~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he~g~~~ 312 (489)
T PRK04172 233 HPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHEHGGDT 312 (489)
T ss_pred ChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHhccCCC
Confidence 456778899999999999999999999532 0000011111100
Q ss_pred ----------CCCCcceeeeeCHHHHHHHHHHc-cC--CcEEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHH
Q psy11418 255 ----------NDLNMDLYMRIAPELYLKMLVVG-GL--DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMH 319 (553)
Q Consensus 255 ----------~~~~~~~~L~~Spql~lk~l~~~-g~--~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~ 319 (553)
+..+..+.||...--.+-++++. +. -|+|+||+|||+|..+.+|++||+|+++.+++. ++.+++.
T Consensus 313 ~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~d~~~l~Ef~ql~~~i~G~~~~f~elkg 392 (489)
T PRK04172 313 GSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTIDATHLPEFYQLEGIVMGEDVSFRDLLG 392 (489)
T ss_pred CCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCCCcccCCchheEEEEEEeCCCCHHHHHH
Confidence 00123467886655555555542 22 299999999999999999999999999999986 6889999
Q ss_pred HHHHHHhcc
Q psy11418 320 LTEDLISGR 328 (553)
Q Consensus 320 ~~e~li~~~ 328 (553)
++++++..+
T Consensus 393 ~l~~ll~~l 401 (489)
T PRK04172 393 ILKEFYKRL 401 (489)
T ss_pred HHHHHHHHh
Confidence 999999877
No 110
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.30 E-value=4e-06 Score=90.11 Aligned_cols=132 Identities=10% Similarity=-0.002 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc------cCCCC-CcceeeccCC-CCcceeeeeCHHHHHHHHHHcc---
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI------AGGAT-AKPFVTHHND-LNMDLYMRIAPELYLKMLVVGG--- 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~------~gga~-a~~F~t~~~~-~~~~~~L~~Spql~lk~l~~~g--- 278 (553)
-.+.+..|...+++.|..+||.||+||++... .|... ...|.. .+. -|..+-||.-.....-++++..
T Consensus 20 e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f-~D~~~g~~l~LRpD~T~~iaR~~a~~~~~ 98 (392)
T PRK12421 20 EAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKL-IDQLSGRLMGVRADITPQVARIDAHLLNR 98 (392)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEE-EcCCCCcEEEECCcCCHHHHHHHHhhcCC
Confidence 34678899999999999999999999999521 12221 223332 233 2566889966666666654422
Q ss_pred --CCcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCcccccccccc
Q psy11418 279 --LDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANARMY 344 (553)
Q Consensus 279 --~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~ 344 (553)
--|.|++|+|||.+........||+|+.+|.-+.+ -.|++.++-+.++.+ ++...++..|.+.+
T Consensus 99 ~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~l--gi~~~~l~ig~~~i 168 (392)
T PRK12421 99 EGVARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNA--GVPALHLDLGHVGI 168 (392)
T ss_pred CCceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHHHHHHHHHHHc--CCCCeEEEeCCHHH
Confidence 24999999999999888778899999999987763 558999999999888 66667777776443
No 111
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=98.30 E-value=3.2e-06 Score=88.10 Aligned_cols=113 Identities=22% Similarity=0.287 Sum_probs=78.5
Q ss_pred HHHHHHHHHhhhCCeEEEecceecccc-C-----CCCCcceeeccC--CCCcceeee--eCHHHHHHHHHHccCC-cEEE
Q psy11418 216 QIIAYVRRYLDSLGFLEVETPMMNMIA-G-----GATAKPFVTHHN--DLNMDLYMR--IAPELYLKMLVVGGLD-RVYE 284 (553)
Q Consensus 216 ~i~~~ir~fl~~~gF~EV~TPil~~~~-g-----ga~a~~F~t~~~--~~~~~~~L~--~Spql~lk~l~~~g~~-rVfe 284 (553)
.+...||++|...||.|+.+|.|.+.. . -....|-...++ |.+...-|| .||-+..- +-..... |+|+
T Consensus 112 ~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~~~~lLRThTSp~qir~-L~~~~~Pirif~ 190 (339)
T PRK00488 112 QTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYIDDGLLLRTHTSPVQIRT-MEKQKPPIRIIA 190 (339)
T ss_pred HHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEcCCceeeccCcHHHHHH-HHhcCCCeEEEE
Confidence 456889999999999999999995321 0 000011000001 224445677 45543222 2222222 9999
Q ss_pred EccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhccc
Q psy11418 285 VGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGRK 329 (553)
Q Consensus 285 i~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~~ 329 (553)
+|+|||++..|.+|.|+|+|+|.-.... ++.++...++.+++.++
T Consensus 191 ~G~VyR~D~~DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~f 237 (339)
T PRK00488 191 PGRVYRNDSDDATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFF 237 (339)
T ss_pred eeeEEEcCCCCcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999877764 79999999999999995
No 112
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=98.29 E-value=1.5e-06 Score=87.93 Aligned_cols=112 Identities=20% Similarity=0.181 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHhhhCC--eEEEecceeccccCCCCCcceeecc---CCCCcceeeeeCHH----HHHHHHHHcc---
Q psy11418 211 FIVRAQIIAYVRRYLDSLG--FLEVETPMMNMIAGGATAKPFVTHH---NDLNMDLYMRIAPE----LYLKMLVVGG--- 278 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~g--F~EV~TPil~~~~gga~a~~F~t~~---~~~~~~~~L~~Spq----l~lk~l~~~g--- 278 (553)
.+++..|++.+|+.|...| |.||+||+|.+. ..|.+.. +.-+..+|||.... ...++++...
T Consensus 32 ~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~~~g~~d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~~ 105 (254)
T cd00774 32 VELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE------LMFKTSIGPVESGGNLGYLRPETAQGIFVNFKNLLEFNRRK 105 (254)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH------HHheeeecccCCCCcccccCCcccchHHHHHHHHHHHhCCC
Confidence 4688899999999999885 999999999754 3555431 23356788985443 3344444332
Q ss_pred CC-cEEEEccccccCCCCC---CccCCcceeeeEeccCC------HHHHHHHHHHHHhcc
Q psy11418 279 LD-RVYEVGRQFRNEGIDL---THNPEFTTCEFYMAYAD------YNDLMHLTEDLISGR 328 (553)
Q Consensus 279 ~~-rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a~~~------~~~~m~~~e~li~~~ 328 (553)
+. |+|+||+|||+|.+.. .+.-||||+|+|.-..+ ++.+++...+++..+
T Consensus 106 lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~~~~~~e~~~~v~~~~~~~l~~~ 165 (254)
T cd00774 106 LPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPKF 165 (254)
T ss_pred CCchhhhhchhhccccCcccceeeeccchhhheeeeECCCCchHHHHHHHHHHHHHHHHc
Confidence 22 9999999999998765 58899999999986542 445555555555444
No 113
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=98.28 E-value=4.6e-06 Score=86.52 Aligned_cols=133 Identities=19% Similarity=0.285 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceeccc------cCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccC---
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI------AGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL--- 279 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~------~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~--- 279 (553)
.-.+.+..+.+.+++.|..+||.+|+||++... .|....+.|.. .+.-|..+-||.-.....-++++...
T Consensus 8 ~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~-~D~~G~~l~LR~D~T~~iaR~~a~~~~~~ 86 (311)
T PF13393_consen 8 EEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRF-LDRSGRVLALRPDLTVPIARYVARNLNLP 86 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEE-ECTTSSEEEE-SSSHHHHHHHHHHCCGSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEE-EecCCcEeccCCCCcHHHHHHHHHhcCcC
Confidence 345788999999999999999999999999532 12222234433 34567889999888888888777543
Q ss_pred --CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHh-cccccCCCcccccccccc
Q psy11418 280 --DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLIS-GRKEDRNRPCVMANARMY 344 (553)
Q Consensus 280 --~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~-~~~~~~~~iqv~~n~r~~ 344 (553)
.|+|++|++||.+.....+.-||+|+.+|.-..+ -.|++.++-+++. .+ +++..++..|...+
T Consensus 87 ~~~r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~~~l--~~~~~~i~i~h~~i 156 (311)
T PF13393_consen 87 RPKRYYYIGPVFRYERPGKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILDREL--GLENFTIRINHTGI 156 (311)
T ss_dssp SSEEEEEEEEEEEEETTTTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHH--TTTSEEEEEEEHHH
T ss_pred CCceEEEEcceeeccccCCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHHhhc--CCCCcEEEEcCchh
Confidence 4899999999999888888999999999998764 4488999988886 65 46777777776443
No 114
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.
Probab=98.26 E-value=2e-06 Score=74.76 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=58.5
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCC-------CceeEEeeeEEEEeccCCCCCcc
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK-------GELSIIPKKLTLLSPCLHMLPHM 397 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~-------g~~El~~~~i~vl~~~~~~~P~~ 397 (553)
|-.+-++.+.+|++++...-...++++.+++.|+.||+|.|+|.+.+++. +++||.++++++|++|..++|+.
T Consensus 20 Fi~LrD~sg~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~il~~~~~~~P~~ 99 (102)
T cd04320 20 FLVLRQQGYTIQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVKKPEEPIKSCTQQDVELHIEKIYVVSEAAEPLPFQ 99 (102)
T ss_pred EEEEecCCceEEEEEeCCcccCCHHHHHHHhcCCCccEEEEEEEEECCCCcccCCCcCcEEEEEEEEEEEecCCCCCCCC
Confidence 34566777889988875321013567788899999999999999987653 88999999999999998889976
Q ss_pred c
Q psy11418 398 H 398 (553)
Q Consensus 398 ~ 398 (553)
.
T Consensus 100 ~ 100 (102)
T cd04320 100 L 100 (102)
T ss_pred C
Confidence 4
No 115
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.25 E-value=6.4e-06 Score=84.61 Aligned_cols=125 Identities=14% Similarity=0.190 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc--CC-CCCcceeeccCCCCcceeeeeCHHHHHHHHHHccC------C
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GG-ATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL------D 280 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~--gg-a~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~------~ 280 (553)
-...+..+.+.+++.|..+||.||+||++-..+ +. ...+.|.. .+.-|..+-||.-.....-|+++..+ -
T Consensus 18 e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~-~D~~g~~l~LRpD~T~~iaR~~a~~~~~~~~p~ 96 (281)
T PRK12293 18 SAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRF-SDEKNHQISLRADSTLDVVRIVTKRLGRSTEHK 96 (281)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEE-ECCCCCEEEECCcCCHHHHHHHHHhcccCCCce
Confidence 346788899999999999999999999995321 11 11234432 23456778899777776666655433 2
Q ss_pred cEEEEccccccCCCCCCccCCcceeeeEeccC-CHHHHHHHHHHHHhcccccCCCcccccccccc
Q psy11418 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA-DYNDLMHLTEDLISGRKEDRNRPCVMANARMY 344 (553)
Q Consensus 281 rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~-~~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~ 344 (553)
|.|++|+|||.|. .||+|+.+|.-+. +..|++.++-+.+..+ +++ .++..|.+.+
T Consensus 97 r~~Y~g~vfR~~~------rEf~Q~GvEliG~~~~~Evi~la~~~l~~l--gl~-~~i~ig~~~i 152 (281)
T PRK12293 97 KWFYIQPVFRYPS------NEIYQIGAELIGEEDLSEILNIAAEIFEEL--ELE-PILQISNIKI 152 (281)
T ss_pred eEEEeccEEecCC------CcccccCeEeeCCCCHHHHHHHHHHHHHHc--CCC-CEEEECCHHH
Confidence 8999999999984 6999999999876 5889999999988888 444 3566665443
No 116
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=98.23 E-value=6.8e-06 Score=83.23 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccc----cCCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHH----c-
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----AGGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVV----G- 277 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~----~- 277 (553)
.+++.+|.+.+++.|.+.||.||.||+|.+. .+|. ..+.|... +..+.+++||...+-.+-.++. .
T Consensus 31 ~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~-d~~~~~l~LrPt~e~~~t~~~~~~i~s~ 109 (255)
T cd00779 31 LRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLK-DRHGKEFLLGPTHEEVITDLVANEIKSY 109 (255)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEe-cCCCCeEEEecCCcHHHHHHHHhccccH
Confidence 4678999999999999999999999999641 1121 12344431 2335678999764432222222 1
Q ss_pred -cCC-cEEEEccccccCCCCC-C--ccCCcceeeeEeccCCHHHHHHHHHHH
Q psy11418 278 -GLD-RVYEVGRQFRNEGIDL-T--HNPEFTTCEFYMAYADYNDLMHLTEDL 324 (553)
Q Consensus 278 -g~~-rVfei~~~FR~E~~~~-~--H~~EFt~lE~e~a~~~~~~~m~~~e~l 324 (553)
.+. |+|++++|||+|.... . +.-||+|+|++....+-.+.....+++
T Consensus 110 ~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i 161 (255)
T cd00779 110 KQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKM 161 (255)
T ss_pred hhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHH
Confidence 233 9999999999994443 3 888999999999888654544433333
No 117
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=98.23 E-value=5.5e-06 Score=89.93 Aligned_cols=130 Identities=22% Similarity=0.367 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc----c--C-CCC--CcceeeccCCCCcceeeeeCHHHHHHHHHHcc--
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----A--G-GAT--AKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG-- 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~--g-ga~--a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g-- 278 (553)
-...+..+...+++.|..+||.||.||+|... . | +.. .+.|.. .+.-|..+.||.-.....-++++..
T Consensus 17 ~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~-~D~~g~~l~LRpD~T~~iaR~va~~~~ 95 (423)
T PRK12420 17 EQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTL-TDQGKRDLALRYDLTIPFAKVVAMNPN 95 (423)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEE-ecCCCceecccccccHHHHHHHHhCcC
Confidence 44678889999999999999999999999542 1 1 111 123332 2445778899977777777766642
Q ss_pred C--C-cEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCccccccccc
Q psy11418 279 L--D-RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANARM 343 (553)
Q Consensus 279 ~--~-rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~ 343 (553)
. . |.|++|+|||.|.....+.-||+|+++|.-..+ ..|++.++-+.++.+ ++ ..++..|.+.
T Consensus 96 ~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~l--g~-~~~i~l~~~~ 164 (423)
T PRK12420 96 IRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRL--NL-EVTIQYNNRK 164 (423)
T ss_pred CCCCeeEEEEcceECCCCCCCCccceeEECCeeeECCCCCcccHHHHHHHHHHHHHC--CC-CEEEEEcCHH
Confidence 2 2 899999999999988889999999999987653 588999998888887 55 4667676643
No 118
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=98.20 E-value=6.1e-06 Score=89.59 Aligned_cols=57 Identities=30% Similarity=0.406 Sum_probs=48.3
Q ss_pred cEEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcccccCCCccccccc
Q psy11418 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGRKEDRNRPCVMANA 341 (553)
Q Consensus 281 rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~~~~~~~iqv~~n~ 341 (553)
|+|.||+|||+|..|++|+|||.|+|.-.... ++.+++.++++++..+ +. .++...+
T Consensus 344 k~fsigrVfR~d~iDatH~~eFhQ~EG~vvd~~~t~~~L~g~l~~f~~~l--g~--~~~RfrP 402 (492)
T PLN02853 344 RYFSIDRVFRNEAVDRTHLAEFHQVEGLVCDRGLTLGDLIGVLEDFFSRL--GM--TKLRFKP 402 (492)
T ss_pred EEEeccceecCCCCCcccCccceeEEEEEEeCCCCHHHHHHHHHHHHHHc--CC--ceEEEec
Confidence 99999999999999999999999999887754 7999999999999886 33 4444444
No 119
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=98.15 E-value=3.7e-06 Score=85.41 Aligned_cols=116 Identities=16% Similarity=0.104 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccc----c-CCC----CCcceeeccC---CCCcceeeeeCHHHHHHHHHHcc
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----A-GGA----TAKPFVTHHN---DLNMDLYMRIAPELYLKMLVVGG 278 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~-gga----~a~~F~t~~~---~~~~~~~L~~Spql~lk~l~~~g 278 (553)
.+++.+|++.+++.+.+.||.||.||+|.+. . +|- ..+.|..... ..+.+++|+-..|-.+-.+++.-
T Consensus 32 ~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~~ 111 (261)
T cd00778 32 YAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFSKW 111 (261)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHHHhh
Confidence 4688899999999999999999999999642 1 221 1234443110 11247899977554443333221
Q ss_pred ------CC-cEEEEccccccCCCCC---CccCCcceeeeEeccCCHHHHHHHHHHHHh
Q psy11418 279 ------LD-RVYEVGRQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHLTEDLIS 326 (553)
Q Consensus 279 ------~~-rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~e~li~ 326 (553)
+. |+|++++|||+|..++ -+.-||+|.|.+..+.+.++..+..++++.
T Consensus 112 i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~ 169 (261)
T cd00778 112 IRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILD 169 (261)
T ss_pred ccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHH
Confidence 22 8899999999999885 378899999999999987777777776653
No 120
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=7e-06 Score=85.22 Aligned_cols=111 Identities=25% Similarity=0.346 Sum_probs=74.9
Q ss_pred HHHHHHHHhhhCCeEEEecceeccccCC--C----CCcceeeccC--CCCcc---eeee--eCHHHHHHHHHHcc---CC
Q psy11418 217 IIAYVRRYLDSLGFLEVETPMMNMIAGG--A----TAKPFVTHHN--DLNMD---LYMR--IAPELYLKMLVVGG---LD 280 (553)
Q Consensus 217 i~~~ir~fl~~~gF~EV~TPil~~~~gg--a----~a~~F~t~~~--~~~~~---~~L~--~Spql~lk~l~~~g---~~ 280 (553)
++..++++|.+.||.+++.|-+.+..-. + --.|...-++ |++.+ .-|| .||-.-. .+... =-
T Consensus 116 ~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~vq~R--~l~~~~~~P~ 193 (335)
T COG0016 116 TIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHTSPVQAR--TLAENAKIPI 193 (335)
T ss_pred HHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccceEEEcCCCCceeecccCcHhhHH--HHHhCCCCCc
Confidence 4688999999999999999977432111 0 0112211111 22222 3565 3332221 22232 34
Q ss_pred cEEEEccccccCCCCCCccCCcceeeeEecc--CCHHHHHHHHHHHHhccc
Q psy11418 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAY--ADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 281 rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~--~~~~~~m~~~e~li~~~~ 329 (553)
|+|.+|+|||+|..|++|+|||+|+|.-... .++.+++.+++++++.++
T Consensus 194 k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~f 244 (335)
T COG0016 194 KIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFF 244 (335)
T ss_pred eEecccceecCCCCCcccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999965543 379999999999999995
No 121
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=98.13 E-value=5.1e-06 Score=73.02 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=58.1
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC--CCceeEEeeeEEEEeccCCCCCcccc
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSIIPKKLTLLSPCLHMLPHMHF 399 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~--~g~~El~~~~i~vl~~~~~~~P~~~~ 399 (553)
|-.+-++.+.+|+++.... ..++++.+++.|+.||+|.|+|.+.+++ .+++||.++++++|+++..++|+++.
T Consensus 32 Fi~LrD~~g~iQ~v~~~~~--~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~Ei~~~~i~il~~~~~~~P~~~~ 106 (108)
T cd04316 32 FVILRDREGIVQVTAPKKK--VDKELFKTVRKLSRESVISVTGTVKAEPKAPNGVEIIPEEIEVLSEAKTPLPLDPT 106 (108)
T ss_pred EEEEecCCeeEEEEEeCCC--CCHHHHHHHhCCCCcCEEEEEEEEEeCCCCCCCEEEEEeEEEEEeCCCCCCCcCcC
Confidence 4455666777888876432 2355777889999999999999998776 47899999999999999888997654
No 122
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=98.13 E-value=1.4e-05 Score=89.99 Aligned_cols=108 Identities=22% Similarity=0.234 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc----cCC----CCCcceeeccCCCCcceeeeeCHHHHHHHHHHc----
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----AGG----ATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG---- 277 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~gg----a~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~---- 277 (553)
-++++.+|.+.+|+.|.+.||.||.||+|.+. .+| -..+.|... +..+.+++||-..+-..-.++..
T Consensus 46 g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~-d~~~~~l~LrPt~e~~~~~~~~~~~~s 124 (565)
T PRK09194 46 GLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLK-DRHGRDFVLGPTHEEVITDLVRNEIKS 124 (565)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEe-cCCCCEEEECCCChHHHHHHHHhhhhh
Confidence 34689999999999999999999999999632 122 112345432 34567899996444332222221
Q ss_pred --cC-CcEEEEccccccCCCCC-C--ccCCcceeeeEeccCCHHHHH
Q psy11418 278 --GL-DRVYEVGRQFRNEGIDL-T--HNPEFTTCEFYMAYADYNDLM 318 (553)
Q Consensus 278 --g~-~rVfei~~~FR~E~~~~-~--H~~EFt~lE~e~a~~~~~~~m 318 (553)
.+ -|.|+|+++||.|.... . +.-||+|.|.|....+-++..
T Consensus 125 ~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~ 171 (565)
T PRK09194 125 YKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLD 171 (565)
T ss_pred cccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHH
Confidence 12 29999999999994333 3 788999999999887544433
No 123
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=98.12 E-value=2.2e-05 Score=81.28 Aligned_cols=127 Identities=18% Similarity=0.190 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHc-----
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG----- 277 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~----- 277 (553)
.+++..|.+.+++.+.+.||.||.||+|...+ +|- ..+.|... .-+.+++||-..+-..-++.+.
T Consensus 30 ~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~--~~~~~l~LRP~~~~~~~~~~~~~~~s~ 107 (298)
T cd00771 30 AIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFE--EEDEEYGLKPMNCPGHCLIFKSKPRSY 107 (298)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEec--cCCceEEEcccCCHHHHHHHHhhccch
Confidence 46788999999999999999999999995321 121 12344432 2346789996555444333332
Q ss_pred -cCC-cEEEEccccccCCCCC----CccCCcceeeeEeccCC------HHHHHHHHHHHHhcccccCCCccccccc
Q psy11418 278 -GLD-RVYEVGRQFRNEGIDL----THNPEFTTCEFYMAYAD------YNDLMHLTEDLISGRKEDRNRPCVMANA 341 (553)
Q Consensus 278 -g~~-rVfei~~~FR~E~~~~----~H~~EFt~lE~e~a~~~------~~~~m~~~e~li~~~~~~~~~iqv~~n~ 341 (553)
.+. |+|++|+|||+|.... .+..||+|.|.+..... ..+++++++++++.+ ++....+..+.
T Consensus 108 ~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l~~~~~~l~~l--gl~~~~i~l~~ 181 (298)
T cd00771 108 RDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDF--GFFDYKVELST 181 (298)
T ss_pred hhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHHHHHHHHHHHc--CCCcEEEEEEc
Confidence 223 9999999999998753 36789999999986432 335777777777776 44444444443
No 124
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=98.05 E-value=2.2e-05 Score=88.06 Aligned_cols=126 Identities=16% Similarity=0.160 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc----cCC----CCCcceeeccCCCCcceeeeeCHHHH----HHHHHHc
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----AGG----ATAKPFVTHHNDLNMDLYMRIAPELY----LKMLVVG 277 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~gg----a~a~~F~t~~~~~~~~~~L~~Spql~----lk~l~~~ 277 (553)
-.+++.+|.+.+|+.|.+.||.||.||+|.+. .+| -..+.|... +..+.+++||-..|-. ..+.+.+
T Consensus 46 g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~-dr~~~~l~LrPT~Ee~~t~~~~~~i~s 124 (568)
T TIGR00409 46 GLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLK-DRKGREFVLGPTHEEVITDLARNEIKS 124 (568)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEe-cCCCCEEEEcCCCcHHHHHHHHHHHhh
Confidence 35688999999999999999999999999752 111 123455542 3456789999652222 1222222
Q ss_pred --cCC-cEEEEccccccCC-CCCC--ccCCcceeeeEeccCCHHHHHHHHHHHH---hcccccCCCcc
Q psy11418 278 --GLD-RVYEVGRQFRNEG-IDLT--HNPEFTTCEFYMAYADYNDLMHLTEDLI---SGRKEDRNRPC 336 (553)
Q Consensus 278 --g~~-rVfei~~~FR~E~-~~~~--H~~EFt~lE~e~a~~~~~~~m~~~e~li---~~~~~~~~~iq 336 (553)
.+. |+|+|+++||+|. .... +..||+|.|.|....+.++.....+.++ ..+++.++...
T Consensus 125 yr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~LgL~~ 192 (568)
T TIGR00409 125 YKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRLGLDF 192 (568)
T ss_pred ccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 233 9999999999994 3333 8889999999998887555544444332 44444445443
No 125
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.05 E-value=2.4e-05 Score=83.44 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhhhCCeEEEecceeccc------cCCCC-CcceeeccCCCCcceeeeeCHHHHHHHHHHc----cCCcEE
Q psy11418 215 AQIIAYVRRYLDSLGFLEVETPMMNMI------AGGAT-AKPFVTHHNDLNMDLYMRIAPELYLKMLVVG----GLDRVY 283 (553)
Q Consensus 215 s~i~~~ir~fl~~~gF~EV~TPil~~~------~gga~-a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~----g~~rVf 283 (553)
..+.+.+++.|..+||.||+||++... .|... ...|.. .+.-|..+.||.-.....-++++. .-.|.|
T Consensus 8 ~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f-~D~~G~~l~LRpD~T~piaR~~~~~~~~~p~R~~ 86 (373)
T PRK12295 8 AAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVT-SDENGEELCLRPDFTIPVCRRHIATAGGEPARYA 86 (373)
T ss_pred HHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEE-ECCCCCEEeeCCCCcHHHHHHHHHcCCCCCeEEE
Confidence 377889999999999999999999532 12221 223432 234467888996666666654433 123899
Q ss_pred EEccccccCCCCCCccCCcceeeeEeccC-C----HHHHHHHHHHHHhcccccCCCcccccccccc
Q psy11418 284 EVGRQFRNEGIDLTHNPEFTTCEFYMAYA-D----YNDLMHLTEDLISGRKEDRNRPCVMANARMY 344 (553)
Q Consensus 284 ei~~~FR~E~~~~~H~~EFt~lE~e~a~~-~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~ 344 (553)
++|+|||.| ..+..||||+.+|.-+. + ..|++.++-+.+..+ ++...++..|.+.+
T Consensus 87 Y~g~VfR~~---~gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~l--gl~~~~i~ig~~~i 147 (373)
T PRK12295 87 YLGEVFRQR---RDRASEFLQAGIESFGRADPAAADAEVLALALEALAAL--GPGDLEVRLGDVGL 147 (373)
T ss_pred EEccEEECC---CCCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHc--CCCceEEEeCCHHH
Confidence 999999999 34678999999999874 3 458999999999888 66667777666443
No 126
>PLN02788 phenylalanine-tRNA synthetase
Probab=98.00 E-value=2.7e-05 Score=83.17 Aligned_cols=113 Identities=18% Similarity=0.206 Sum_probs=76.6
Q ss_pred HHHHHHHHhhhC---CeEEEe--cceeccccCC-----CCCcceeec--cCCCCcceeeeeCHHHHHHHHHHccCCcEEE
Q psy11418 217 IIAYVRRYLDSL---GFLEVE--TPMMNMIAGG-----ATAKPFVTH--HNDLNMDLYMRIAPELYLKMLVVGGLDRVYE 284 (553)
Q Consensus 217 i~~~ir~fl~~~---gF~EV~--TPil~~~~gg-----a~a~~F~t~--~~~~~~~~~L~~Spql~lk~l~~~g~~rVfe 284 (553)
+++.|+++|... ||.+++ .|+.+.-.+- ..-.|=... .-|.+...-||.-.--+--+++..+-.|++.
T Consensus 73 ~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~~~~lLRTHTSa~q~~~l~~~~~~~~~ 152 (402)
T PLN02788 73 LKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVDAQTVLRCHTSAHQAELLRAGHTHFLV 152 (402)
T ss_pred HHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEecCCccccCCCcHHHHHHHHhCCCcEEE
Confidence 457778888886 999998 6765421110 000011000 1144566667743333333344456789999
Q ss_pred EccccccCCCCCCccCCcceeeeEecc--------------CCHHHHHHHHHHHHhccc
Q psy11418 285 VGRQFRNEGIDLTHNPEFTTCEFYMAY--------------ADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 285 i~~~FR~E~~~~~H~~EFt~lE~e~a~--------------~~~~~~m~~~e~li~~~~ 329 (553)
+|+|||+|.+|++|.|+|.|+|.-..+ .+..++...+|.++..++
T Consensus 153 ~g~VyRrD~iD~tH~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le~l~~~lf 211 (402)
T PLN02788 153 TGDVYRRDSIDATHYPVFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGLARHLF 211 (402)
T ss_pred EeeEeecCCCCcccCccceeEEEEEEecccccccccccccccCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999988776 347889999999998775
No 127
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.97 E-value=3.4e-05 Score=88.02 Aligned_cols=131 Identities=19% Similarity=0.197 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHc---
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG--- 277 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~--- 277 (553)
.-.+++..|.+.+++.+...||.||.||+|...+ +|. .-+.|.. .+.-|..+.||.-..-..-++.+.
T Consensus 268 ~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~-~d~~~~~~~LRP~~~~~~~r~~~~~~~ 346 (638)
T PRK00413 268 KGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPT-TESDGEEYALKPMNCPGHVQIYKQGLR 346 (638)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhcccee-ecCCCcEEEEecCCcHHHHHHHhCcCC
Confidence 3456899999999999999999999999994321 221 1234543 133467889996544443333332
Q ss_pred ---cCC-cEEEEccccccCCCCC----CccCCcceeeeEeccC------CHHHHHHHHHHHHhcccccCCCcccccccc
Q psy11418 278 ---GLD-RVYEVGRQFRNEGIDL----THNPEFTTCEFYMAYA------DYNDLMHLTEDLISGRKEDRNRPCVMANAR 342 (553)
Q Consensus 278 ---g~~-rVfei~~~FR~E~~~~----~H~~EFt~lE~e~a~~------~~~~~m~~~e~li~~~~~~~~~iqv~~n~r 342 (553)
.+. |.|++|+|||+|.+.. .+.-||||+|++.-.. +..+++.++.+++..+ ++....+..|.+
T Consensus 347 s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~~eii~l~~~~~~~l--g~~~~~i~l~~r 423 (638)
T PRK00413 347 SYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKVIDLILDVYKDF--GFEDYEVKLSTR 423 (638)
T ss_pred ChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHc--CCceEEEEEecC
Confidence 222 9999999999998863 3678999999998433 1266888888888777 555556666653
No 128
>PLN02908 threonyl-tRNA synthetase
Probab=97.95 E-value=3.8e-05 Score=88.23 Aligned_cols=113 Identities=15% Similarity=0.179 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC-
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL- 279 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~- 279 (553)
.-.+++.+|++.+|+.+.++||.||.||.|.+.. +|- ....|.. +.-+.+++|+--.+-.+-.+.....
T Consensus 319 ~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~--~~~~~~~~Lrp~~~~~~~~~~~~~~~ 396 (686)
T PLN02908 319 HGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVF--EIEKQEFGLKPMNCPGHCLMFAHRVR 396 (686)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEE--ecCCeeEEEcCCCcHHHHHHHhcccc
Confidence 4468899999999999999999999999995321 111 1133433 2235788999766555554443321
Q ss_pred -----C-cEEEEccccccCCCCC----CccCCcceeeeEeccCCHHHHHHHHHHH
Q psy11418 280 -----D-RVYEVGRQFRNEGIDL----THNPEFTTCEFYMAYADYNDLMHLTEDL 324 (553)
Q Consensus 280 -----~-rVfei~~~FR~E~~~~----~H~~EFt~lE~e~a~~~~~~~m~~~e~l 324 (553)
. |+|++|+|||+|.+.. .+..||+|.|++. |...+++.+.++++
T Consensus 397 s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~~e~~~~ 450 (686)
T PLN02908 397 SYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIKDEVKGV 450 (686)
T ss_pred ChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHHHHHHHH
Confidence 1 8999999999999852 5888999999999 76645544444443
No 129
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=97.94 E-value=5e-05 Score=85.39 Aligned_cols=129 Identities=18% Similarity=0.198 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc----cCCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHcc---
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----AGGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG--- 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g--- 278 (553)
-.+++..|.+.+|+.+...||.||.||+|... .+|- ..+.|.. .+.-|..++||...+-..-++++..
T Consensus 199 g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~-~d~~~~~~~LrP~~~~~i~~~~~~~~~s 277 (563)
T TIGR00418 199 GATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPF-TELDNREFMLKPMNCPGHFLIFKSSLRS 277 (563)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhccee-ccCCCceEEEecCCCHHHHHHHhCcCCC
Confidence 45688999999999999999999999999532 1221 1123322 1234578999977666655544432
Q ss_pred ---CC-cEEEEccccccCCCCC----CccCCcceeeeEeccC------CHHHHHHHHHHHHhcccccCCCccccccc
Q psy11418 279 ---LD-RVYEVGRQFRNEGIDL----THNPEFTTCEFYMAYA------DYNDLMHLTEDLISGRKEDRNRPCVMANA 341 (553)
Q Consensus 279 ---~~-rVfei~~~FR~E~~~~----~H~~EFt~lE~e~a~~------~~~~~m~~~e~li~~~~~~~~~iqv~~n~ 341 (553)
+. |+|++|+|||+|.... -+.-||+|.|+|.-.. .+.+++.++.++++.+ ++....+..|.
T Consensus 278 ~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~~~~~~~e~~~~i~~~~~~~~~l--gl~~~~~~l~~ 352 (563)
T TIGR00418 278 YRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYSDF--GFSFDKYELST 352 (563)
T ss_pred hHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcCHHHHHHHHHHHHHHHHHHHHHc--CCCeEEEEEeC
Confidence 22 9999999999996542 2788999999998654 1455888888877766 44433344543
No 130
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=97.94 E-value=3e-05 Score=86.42 Aligned_cols=105 Identities=20% Similarity=0.179 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc----cCCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHccCC-
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----AGGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD- 280 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~- 280 (553)
-.++|..|.+.+|+.+.++||.||.||+|... .+|- ....|.. +.-+.+++||.-.+-..-++......
T Consensus 167 G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~--~~~~e~~~LrPm~cp~~~~~~~~~~~S 244 (545)
T PRK14799 167 GQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVF--NMEGDEYGVKPMNCPAHILIYKSKPRT 244 (545)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhccee--eccCceEEeccCCCHHHHHHHhccccC
Confidence 45789999999999999999999999999421 1211 1122332 23357899997766665554443321
Q ss_pred ------cEEEEccccccCCCCC----CccCCcceeeeEeccCCHHHH
Q psy11418 281 ------RVYEVGRQFRNEGIDL----THNPEFTTCEFYMAYADYNDL 317 (553)
Q Consensus 281 ------rVfei~~~FR~E~~~~----~H~~EFt~lE~e~a~~~~~~~ 317 (553)
|.|++|+|||+|.+.. .+..||||.|+.. |.+.+++
T Consensus 245 yrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~~~q~ 290 (545)
T PRK14799 245 YRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLREDQL 290 (545)
T ss_pred hhhCCHhhEEecceecCCCCCCccccccceeEEEcccEE-EeCHHHH
Confidence 8999999999999986 5889999999998 7765444
No 131
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=97.93 E-value=4.6e-05 Score=85.92 Aligned_cols=130 Identities=18% Similarity=0.192 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc----cCCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHc----
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----AGGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG---- 277 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~---- 277 (553)
-.+++..|.+.+++.+...||.||.||+|... .+|. ..+.|... +.-|..++||.-..-..-++.+.
T Consensus 205 ~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~-d~~~~~~~LRP~~~~~~~~~~~~~~~s 283 (575)
T PRK12305 205 GAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPM-EIDEEEYYLKPMNCPGHILIYKSRLRS 283 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhccccc-ccCCceEEEecCCCHHHHHHHhcccCC
Confidence 45789999999999999999999999999532 1221 12344331 23467899995443333233332
Q ss_pred --cCC-cEEEEccccccCCCCC----CccCCcceeeeEeccC------CHHHHHHHHHHHHhcccccCCCcccccccc
Q psy11418 278 --GLD-RVYEVGRQFRNEGIDL----THNPEFTTCEFYMAYA------DYNDLMHLTEDLISGRKEDRNRPCVMANAR 342 (553)
Q Consensus 278 --g~~-rVfei~~~FR~E~~~~----~H~~EFt~lE~e~a~~------~~~~~m~~~e~li~~~~~~~~~iqv~~n~r 342 (553)
.+. |.|++|+|||+|.+.. .+..||+|+|++.-.. .+.++++++.+++..+ ++....+..+.+
T Consensus 284 ~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~~~~~~e~~e~i~l~~~~~~~l--gl~~~~i~l~~r 359 (575)
T PRK12305 284 YRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQIEDEILKVLDFVLELLKDF--GFKDYYLELSTR 359 (575)
T ss_pred hhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCHHHHHHHHHHHHHHHHHHHHHc--CCCeEEEEEeCC
Confidence 223 9999999999998853 3678999999996433 1367777777777776 555455656654
No 132
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=97.85 E-value=6.1e-05 Score=85.99 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC---
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL--- 279 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~--- 279 (553)
..++..|.+.+++.+.+.||.||.||+|.+.. +|- ..+.|.+ +.-+..++||...+-..-++....+
T Consensus 274 ~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~--d~~~~~~~LrP~~~~~~~~~~~~~~~sy 351 (639)
T PRK12444 274 QIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFS--EVDNKSFALKPMNCPGHMLMFKNKLHSY 351 (639)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCee--cCCCcEEEEccCCCHHHHHHHhCcccCh
Confidence 35677799999999999999999999995321 121 1123321 2235678899777666665554433
Q ss_pred ----CcEEEEccccccCCCCC----CccCCcceeeeEeccCC-------HHHHHHHHHHHHhcc
Q psy11418 280 ----DRVYEVGRQFRNEGIDL----THNPEFTTCEFYMAYAD-------YNDLMHLTEDLISGR 328 (553)
Q Consensus 280 ----~rVfei~~~FR~E~~~~----~H~~EFt~lE~e~a~~~-------~~~~m~~~e~li~~~ 328 (553)
-|.|++|+|||.|.+.. .+.-||+|.|++ .|.+ +.++++++++++..+
T Consensus 352 ~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~-~f~~~~~~~~e~~~~~~~~~~i~~~l 414 (639)
T PRK12444 352 RELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVTPDQIEDEIKSVMAQIDYVYKTF 414 (639)
T ss_pred hhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEE-EECCHHHHHHHHHHHHHHHHHHHHHc
Confidence 29999999999999763 277899999999 5776 334666666666555
No 133
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=97.78 E-value=7.9e-05 Score=82.14 Aligned_cols=115 Identities=17% Similarity=0.109 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc-----cCCC----CCcceeecc-C--CCCcceeeeeCHHHHH----HH
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI-----AGGA----TAKPFVTHH-N--DLNMDLYMRIAPELYL----KM 273 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-----~gga----~a~~F~t~~-~--~~~~~~~L~~Spql~l----k~ 273 (553)
-.+++..|.+.+++.|.+.||.||.||+|.+. .+|- ..+.|.+.. . .++.+++||...+-.. ++
T Consensus 43 g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~ 122 (477)
T PRK08661 43 GYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKK 122 (477)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHHh
Confidence 34788999999999999999999999999532 1221 124454421 1 2357899997663322 22
Q ss_pred HHHc--cCC-cEEEEccccccCCCCCC---ccCCcceeeeEeccCCHHHHHHHHHHHH
Q psy11418 274 LVVG--GLD-RVYEVGRQFRNEGIDLT---HNPEFTTCEFYMAYADYNDLMHLTEDLI 325 (553)
Q Consensus 274 l~~~--g~~-rVfei~~~FR~E~~~~~---H~~EFt~lE~e~a~~~~~~~m~~~e~li 325 (553)
.+.+ .+. |+|++++|||+|.. ++ +.-||+|.|.+.++.+.++.....+.++
T Consensus 123 ~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l 179 (477)
T PRK08661 123 WIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEETLEML 179 (477)
T ss_pred hhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHH
Confidence 2222 122 89999999999998 54 7889999999999998777766666554
No 134
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=97.77 E-value=6.4e-05 Score=82.72 Aligned_cols=114 Identities=21% Similarity=0.171 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHhhhCCeEEEecceeccc-----cCCC----CCcceeeccC---CCCcceeeeeCHHHHHHHHHHcc-
Q psy11418 212 IVRAQIIAYVRRYLDSLGFLEVETPMMNMI-----AGGA----TAKPFVTHHN---DLNMDLYMRIAPELYLKMLVVGG- 278 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-----~gga----~a~~F~t~~~---~~~~~~~L~~Spql~lk~l~~~g- 278 (553)
+++..|...+++-+.+.||.||.||+|.+. .|+- ..+.|.+... ..+.+++||...+-.+-.++..-
T Consensus 39 ~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~i 118 (472)
T TIGR00408 39 KIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKWV 118 (472)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhccc
Confidence 568899999999999999999999999532 1221 2245544221 13578999977665544322221
Q ss_pred -----CC-cEEEEccccccCCCCC---CccCCcceeeeEeccCCHHHHHHHHHHHH
Q psy11418 279 -----LD-RVYEVGRQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHLTEDLI 325 (553)
Q Consensus 279 -----~~-rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~e~li 325 (553)
+. |+|++++|||+|...+ -+..||+|-|.+.++.+.++.....+.++
T Consensus 119 ~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l 174 (472)
T TIGR00408 119 KSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRAL 174 (472)
T ss_pred cChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHH
Confidence 22 8999999999999875 37889999999999998777665555544
No 135
>KOG1936|consensus
Probab=97.76 E-value=9e-05 Score=78.10 Aligned_cols=134 Identities=13% Similarity=0.210 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceec------cccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHcc-C--
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMN------MIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG-L-- 279 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~------~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g-~-- 279 (553)
+-+.+|..|++.+.+.|..+|..+|+||++- ...|+.. +....--+..|.-+.||-.-...+.|+++.. .
T Consensus 72 ~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEds-kLiYdlkDQGGEl~SLRYDLTVPfARylAmNki~s 150 (518)
T KOG1936|consen 72 EQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDS-KLIYDLKDQGGELCSLRYDLTVPFARYLAMNKITS 150 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhccccc-ceeEehhhcCCcEEEeecccccHHHHHHHHccccc
Confidence 3457899999999999999999999999983 3455543 5544444566777889988888888877654 1
Q ss_pred CcEEEEccccccCCCC--CCccCCcceeeeEeccC-----CHHHHHHHHHHHHhcccccCCCccccccccccc
Q psy11418 280 DRVYEVGRQFRNEGID--LTHNPEFTTCEFYMAYA-----DYNDLMHLTEDLISGRKEDRNRPCVMANARMYQ 345 (553)
Q Consensus 280 ~rVfei~~~FR~E~~~--~~H~~EFt~lE~e~a~~-----~~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~~ 345 (553)
-+-|.|+++||-+... ..+.-||+||||..|+. .-.|.+..+-+++..+ +++..-|..|-|++.
T Consensus 151 ikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~~l--~Igd~~iKvNhRkiL 221 (518)
T KOG1936|consen 151 IKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILSRL--GIGDYGIKVNHRKIL 221 (518)
T ss_pred ceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHhhc--CccceEEEecHHHHH
Confidence 1569999999988774 35899999999999973 3778888888899888 888888899988775
No 136
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=97.74 E-value=0.00016 Score=78.48 Aligned_cols=112 Identities=19% Similarity=0.257 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc---c-CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC--
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI---A-GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL-- 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~---~-gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~-- 279 (553)
-.++..++++.+++.+.+.||.||.||.|.+. . +|- ..+.|.+. +.++||+...|..+-.+...-.
T Consensus 172 g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~----~~~~~L~pTsE~~~~~~~~~~i~s 247 (418)
T TIGR00414 172 GAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLE----DTDLYLIPTAEVPLTNLHRNEILE 247 (418)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEec----CCCEEEEeCCcHHHHHHHhCcCCC
Confidence 45788999999999999999999999999642 1 111 12334332 4678999888777765544322
Q ss_pred -----CcEEEEccccccCCC----CC---CccCCcceeeeEeccCCHHHHHHHHHHHHh
Q psy11418 280 -----DRVYEVGRQFRNEGI----DL---THNPEFTTCEFYMAYADYNDLMHLTEDLIS 326 (553)
Q Consensus 280 -----~rVfei~~~FR~E~~----~~---~H~~EFt~lE~e~a~~~~~~~m~~~e~li~ 326 (553)
-|+|++++|||+|.. ++ -+.-||+|.|.+ .|.+-++..+..++++.
T Consensus 248 ~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~-~f~~~e~s~~~~~~~~~ 305 (418)
T TIGR00414 248 EEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELV-KFCKPEESAEELEEMTS 305 (418)
T ss_pred hHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEE-EEcCHHHHHHHHHHHHH
Confidence 289999999999974 23 378899999995 47765555555555443
No 137
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=97.71 E-value=0.00014 Score=79.33 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccc----cCCC----CCcceeeccCCCCcceeeeeCH-H----HHHHHHHH-
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----AGGA----TAKPFVTHHNDLNMDLYMRIAP-E----LYLKMLVV- 276 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~gga----~a~~F~t~~~~~~~~~~L~~Sp-q----l~lk~l~~- 276 (553)
.+++.+|.+.+|+.+.+.||.||.||+|.+. .+|- ..+.|... +..+.+++|+.-. + ++......
T Consensus 47 ~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~-d~~~~~~~L~Pt~e~~~~~~~~~~~~sy 125 (439)
T PRK12325 47 LKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIK-DRHDREMLYGPTNEEMITDIFRSYVKSY 125 (439)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEe-cCCCCEEEEcCCCcHHHHHHHHHHhhhc
Confidence 5789999999999999999999999999643 1111 12445432 2346778888533 2 22222211
Q ss_pred ccC-CcEEEEccccccCCCCC---CccCCcceeeeEeccCCHHHHHHHHHHHH
Q psy11418 277 GGL-DRVYEVGRQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHLTEDLI 325 (553)
Q Consensus 277 ~g~-~rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~e~li 325 (553)
..+ -|+|++|++||+|.... .+..||+|-|.|....+.+++.+..++++
T Consensus 126 rdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~ 178 (439)
T PRK12325 126 KDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMF 178 (439)
T ss_pred hhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHH
Confidence 112 29999999999996653 27889999999998788665555444443
No 138
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=97.66 E-value=0.00022 Score=77.47 Aligned_cols=112 Identities=18% Similarity=0.215 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHhh-hCCeEEEecceeccc---cCCCC-----CcceeeccCCCCcceeeeeCHHHHHHHHHHccC-
Q psy11418 210 KFIVRAQIIAYVRRYLD-SLGFLEVETPMMNMI---AGGAT-----AKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL- 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~-~~gF~EV~TPil~~~---~gga~-----a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~- 279 (553)
-.++..++++.+++.+. +.||.||.||.|... .+.+. ...|.+. +.++||+...|..+-.+.....
T Consensus 169 ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~----~~~~~L~pTsE~~l~~l~~~~~~ 244 (425)
T PRK05431 169 GARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIE----DDDLYLIPTAEVPLTNLHRDEIL 244 (425)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEec----CCCEEEEeCCcHHHHHHHhcccC
Confidence 34688889999999998 999999999999642 12111 1234332 4678999888887766655432
Q ss_pred ------CcEEEEccccccCCCC----C---CccCCcceeeeEeccCCHHHHHHHHHHHHh
Q psy11418 280 ------DRVYEVGRQFRNEGID----L---THNPEFTTCEFYMAYADYNDLMHLTEDLIS 326 (553)
Q Consensus 280 ------~rVfei~~~FR~E~~~----~---~H~~EFt~lE~e~a~~~~~~~m~~~e~li~ 326 (553)
-|+|++++|||.|... + -+.-||+|.|.+ .|..-++..+..++++.
T Consensus 245 s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~s~~~~~~~l~ 303 (425)
T PRK05431 245 DEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPEDSYAELEELTA 303 (425)
T ss_pred CHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHHHHHHHHHHHH
Confidence 2999999999999853 3 277899999999 56655655555555543
No 139
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=97.65 E-value=0.00025 Score=80.30 Aligned_cols=126 Identities=22% Similarity=0.242 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceeccc---c-----CCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccC-
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI---A-----GGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL- 279 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~---~-----gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~- 279 (553)
.-.+++..|.+.+++.+.+.||.+|.||.|... . .+=..+.|.+.. -+.+++||...+...-.+.....
T Consensus 225 ~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~--~~e~l~Lrp~~c~~~~~~~~~~~~ 302 (613)
T PRK03991 225 KGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKS--DKKDLMLRFAACFGQFLMLKDMTI 302 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecC--CCceEEEecCCCHHHHHHHhCCcC
Confidence 456899999999999999999999999999311 1 111235565432 24678999766544432222211
Q ss_pred ------CcEEEEcc-ccccCCCCC----CccCCcceeeeEeccCCHHHHHHHHHHHHhc---ccccCCCcc
Q psy11418 280 ------DRVYEVGR-QFRNEGIDL----THNPEFTTCEFYMAYADYNDLMHLTEDLISG---RKEDRNRPC 336 (553)
Q Consensus 280 ------~rVfei~~-~FR~E~~~~----~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~---~~~~~~~iq 336 (553)
-|+|++|+ |||+|.+.. .+..||||.|.+..-.+.++.++..++++.. +.+.++...
T Consensus 303 SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~~~lGl~~ 373 (613)
T PRK03991 303 SYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETGEDLGRDY 373 (613)
T ss_pred chhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 28999999 999998753 4888999999999777777777666665544 334444444
No 140
>KOG2784|consensus
Probab=97.63 E-value=7.1e-05 Score=77.23 Aligned_cols=52 Identities=29% Similarity=0.479 Sum_probs=47.2
Q ss_pred ccCC--cEEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 277 GGLD--RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 277 ~g~~--rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
.||. |.|.|-++||||..|++|++||.|+|--.+.. ++.|+|.+.++++..+
T Consensus 329 ~~f~p~K~FSIDrVFRNEtvDaTHLAEFHQVEGviad~gltLgdLig~l~~ff~~l 384 (483)
T KOG2784|consen 329 KGFKPAKYFSIDRVFRNETVDATHLAEFHQVEGVIADKGLTLGDLIGILMEFFTKL 384 (483)
T ss_pred CCCCcccccchhhhhhccccchHHHHHHhhhceeeecCCCcHHHHHHHHHHHHhcc
Confidence 4553 99999999999999999999999999999866 6999999999999877
No 141
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=97.62 E-value=0.00025 Score=73.42 Aligned_cols=111 Identities=19% Similarity=0.284 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC--
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL-- 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~-- 279 (553)
-.+++.+|.+.+++.+.+.||.||.||.|.+.. +|- ..+.|.+. +.+++|+-..+..+-.++....
T Consensus 51 g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~----~~~~~L~pt~e~~~~~l~~~~~~s 126 (297)
T cd00770 51 GALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE----GEDLYLIATAEVPLAALHRDEILE 126 (297)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEec----CCCEEEeecCCHHHHHHHhcccCC
Confidence 457889999999999999999999999996421 111 12344432 3678999888877776654422
Q ss_pred -----CcEEEEccccccCCCC----C---CccCCcceeeeEeccCCHHHHHHHHHHHH
Q psy11418 280 -----DRVYEVGRQFRNEGID----L---THNPEFTTCEFYMAYADYNDLMHLTEDLI 325 (553)
Q Consensus 280 -----~rVfei~~~FR~E~~~----~---~H~~EFt~lE~e~a~~~~~~~m~~~e~li 325 (553)
-|+|++|+|||+|... + -+..||+|.|.+. |..-++..+..++++
T Consensus 127 ~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~-f~~~e~~~~~~~~~l 183 (297)
T cd00770 127 EEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFV-FTKPEESWEELEELI 183 (297)
T ss_pred HhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEE-EECchHHHHHHHHHH
Confidence 2899999999999762 2 3788999999985 543244444333333
No 142
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.36 E-value=0.0011 Score=67.89 Aligned_cols=98 Identities=9% Similarity=-0.013 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCeEEEecceeccc----cCCC--CCcceeeccCCCCcceeeeeCHHHHHHHHHHc---c
Q psy11418 208 RHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----AGGA--TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG---G 278 (553)
Q Consensus 208 ~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~gga--~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~---g 278 (553)
++.+..+..+.+.+++.|.++||.||+||++-.. ..+. ....|..-.+.-|+.+-||.-.....-|+++. +
T Consensus 4 ~~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~~~ 83 (272)
T PRK12294 4 SEQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYPTA 83 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcCCC
Confidence 3455677888899999999999999999999421 1121 11222222233578889998887777776653 3
Q ss_pred CCcEEEEccccccCCCCCCccCCcceeeeEeccC
Q psy11418 279 LDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA 312 (553)
Q Consensus 279 ~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~ 312 (553)
..|.|++|++||++. +|+|+.+|.-+.
T Consensus 84 ~~Rl~Y~g~VfR~~~-------~~~Q~GvEliG~ 110 (272)
T PRK12294 84 ATKVAYAGLIIRNNE-------AAVQVGIENYAP 110 (272)
T ss_pred CceEEEeccEeccCC-------CcceeceEEECC
Confidence 459999999999874 489999998874
No 143
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=97.35 E-value=0.0022 Score=52.40 Aligned_cols=73 Identities=14% Similarity=0.250 Sum_probs=59.0
Q ss_pred EEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc-CCceeEeeeeEE
Q psy11418 93 LSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-KGELSIIPKKLT 171 (553)
Q Consensus 93 V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~-~ge~~l~~~~i~ 171 (553)
++|.|-|.++|...++++|++|.|.++.+.+++..+.+ ......|..|+.|.|.|.+.... .|++.|.++++.
T Consensus 2 ~~v~g~v~~i~~tk~g~~~~~L~D~~~~i~~~~f~~~~------~~~~~~l~~g~~v~v~g~v~~~~~~~~~~l~v~~i~ 75 (78)
T cd04489 2 VWVEGEISNLKRPSSGHLYFTLKDEDASIRCVMWRSNA------RRLGFPLEEGMEVLVRGKVSFYEPRGGYQLIVEEIE 75 (78)
T ss_pred EEEEEEEecCEECCCcEEEEEEEeCCeEEEEEEEcchh------hhCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEE
Confidence 67899999998633369999999999999999987632 33456799999999999998544 677889888774
No 144
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=97.29 E-value=0.00036 Score=58.69 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=46.6
Q ss_pred HhcccccCC-CcccccccccccChHHHHHhhcccCCccEEEEEcccccCCC------CceeEEeeeEEEEec
Q psy11418 325 ISGRKEDRN-RPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK------GELSIIPKKLTLLSP 389 (553)
Q Consensus 325 i~~~~~~~~-~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~------g~~El~~~~i~vl~~ 389 (553)
|-.+-++.+ .+|++.+.. .+.+..++.|+.||+|.|+|.+.+++. |++||.++++++|++
T Consensus 20 Fi~LrD~~g~~iQvv~~~~-----~~~~~~~~~l~~~s~V~V~G~v~~~~~~~~~~~~~~Ei~~~~i~il~~ 86 (86)
T cd04321 20 FADLRDPNGDIIQLVSTAK-----KDAFSLLKSITAESPVQVRGKLQLKEAKSSEKNDEWELVVDDIQTLNA 86 (86)
T ss_pred EEEEECCCCCEEEEEECCC-----HHHHHHHhcCCCCcEEEEEEEEEeCCCcCCCCCCCEEEEEEEEEEecC
Confidence 344556666 488877642 245567788999999999999988764 899999999999984
No 145
>PLN02837 threonine-tRNA ligase
Probab=97.27 E-value=0.0011 Score=75.31 Aligned_cols=125 Identities=15% Similarity=0.076 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC-
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL- 279 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~- 279 (553)
.-.+++.+|++.+++....+||.||.||.|.... +|- ....|.+. +.-+..+.|+.+.+-..-.+....+
T Consensus 245 ~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~-~~~~~~y~l~p~~~p~~~~~~~~~~~ 323 (614)
T PLN02837 245 KGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQM-DIEDELYQLRPMNCPYHILVYKRKLH 323 (614)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhccccc-CCCCceEEECCCCcHHHHHHHhCccC
Confidence 4568999999999999999999999999996421 110 11333321 1113445677665433222222222
Q ss_pred ------CcEEEEccccccCCCCC----CccCCcceeeeEeccCCHHHHHHHHHHHH---hcccccCCCc
Q psy11418 280 ------DRVYEVGRQFRNEGIDL----THNPEFTTCEFYMAYADYNDLMHLTEDLI---SGRKEDRNRP 335 (553)
Q Consensus 280 ------~rVfei~~~FR~E~~~~----~H~~EFt~lE~e~a~~~~~~~m~~~e~li---~~~~~~~~~i 335 (553)
-|++++|+|||+|.+.. -+.-||+|.|.+. |...++..+..++++ ..+++.++.+
T Consensus 324 SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~-f~~~~q~~~e~~~~l~~~~~~~~~lg~~ 391 (614)
T PLN02837 324 SYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCLEDQIKDEIRGVLDLTEEILKQFGFS 391 (614)
T ss_pred ChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEE-EeCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 28999999999998743 3788999999996 887666555555544 3344444444
No 146
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A
Probab=97.26 E-value=0.00036 Score=58.40 Aligned_cols=61 Identities=25% Similarity=0.383 Sum_probs=48.7
Q ss_pred hcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC-----CCceeEEeeeEEEEec
Q psy11418 326 SGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-----KGELSIIPKKLTLLSP 389 (553)
Q Consensus 326 ~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~-----~g~~El~~~~i~vl~~ 389 (553)
-.+-++.+.+|++++.... ++++..+++|+.||+|.|+|.+.+++ ++++||.++++++|++
T Consensus 20 i~Lrd~~~~iQ~v~~~~~~---~~~~~~~~~l~~~s~V~v~G~~~~~~~~~~~~~~~El~~~~i~il~~ 85 (85)
T cd04100 20 IDLRDGSGIVQVVVNKEEL---GEFFEEAEKLRTESVVGVTGTVVKRPEGNLATGEIELQAEELEVLSK 85 (85)
T ss_pred EEEEeCCeeEEEEEECCcC---hHHHHHHhCCCCCCEEEEEeEEEECCCCCCCCCCEEEEEeEEEEECC
Confidence 3455677888888765322 22677889999999999999998765 7899999999999975
No 147
>PLN02678 seryl-tRNA synthetase
Probab=97.24 E-value=0.0014 Score=71.40 Aligned_cols=116 Identities=18% Similarity=0.216 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc---cCCCCC-----cceeeccCCCCcceeeeeCHHHHHHHHHH-----
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI---AGGATA-----KPFVTHHNDLNMDLYMRIAPELYLKMLVV----- 276 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~---~gga~a-----~~F~t~~~~~~~~~~L~~Spql~lk~l~~----- 276 (553)
-.+++.++++.+++++.++||.||.||.|... .+.+.. ..|... .-+.+.||.-..|..+--+.+
T Consensus 173 ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~--~~~~~~yLi~TaE~~l~~~h~~~~~s 250 (448)
T PLN02678 173 GVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVT--GEGDDKYLIATSEQPLCAYHRGDWID 250 (448)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceec--CCCCceeeecccccccChHHhcccCC
Confidence 35789999999999999999999999999532 111111 223221 012356655433222221111
Q ss_pred -ccC-CcEEEEccccccCCC----CC---CccCCcceeeeEeccCC---------HHHHHHHHHHHHhcc
Q psy11418 277 -GGL-DRVYEVGRQFRNEGI----DL---THNPEFTTCEFYMAYAD---------YNDLMHLTEDLISGR 328 (553)
Q Consensus 277 -~g~-~rVfei~~~FR~E~~----~~---~H~~EFt~lE~e~a~~~---------~~~~m~~~e~li~~~ 328 (553)
..+ =|++++++|||+|.+ ++ .+.-+|++.|... +.. +++|++.+|++++.+
T Consensus 251 ~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~-~~~pe~~~s~~~~e~~l~~~~~i~~~L 319 (448)
T PLN02678 251 PKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFC-ITSPNGNESWEMHEEMLKNSEDFYQSL 319 (448)
T ss_pred HHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEE-EECCCchhHHHHHHHHHHHHHHHHHHc
Confidence 112 289999999999987 34 2666899999954 432 444555555555444
No 148
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.002 Score=70.93 Aligned_cols=115 Identities=21% Similarity=0.239 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CC----CCCcceeeccCCCCcceeeeeCHHHHHHHHHHccC--
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GG----ATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL-- 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gg----a~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~-- 279 (553)
-++++.+|.+.+|+.|++-|..||--|+|++.. .| =+-+.|... +..+.++.||...|--.--++..-+
T Consensus 46 g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~-drg~~~l~L~PTsEe~it~~~~~~i~S 124 (500)
T COG0442 46 GLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVK-DRGDRPLALRPTSEEVITDMFRKWIRS 124 (500)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEE-ccCCceeeeCCCcHHHHHHHHHHHhhh
Confidence 357889999999999999999999999998632 11 123555543 4458899999666543333322222
Q ss_pred -----CcEEEEccccccCCCCCC---ccCCcceeeeEeccCCHHHHHHHHHHHH
Q psy11418 280 -----DRVYEVGRQFRNEGIDLT---HNPEFTTCEFYMAYADYNDLMHLTEDLI 325 (553)
Q Consensus 280 -----~rVfei~~~FR~E~~~~~---H~~EFt~lE~e~a~~~~~~~m~~~e~li 325 (553)
-++|+|...||.|.--++ +..||+|=|.|...+|.+++....++++
T Consensus 125 YkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~ 178 (500)
T COG0442 125 YKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKML 178 (500)
T ss_pred hhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHH
Confidence 289999999999987663 8899999999999999999988888776
No 149
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=97.04 E-value=0.0016 Score=71.36 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=30.7
Q ss_pred cEEEEccccccCCCCC---CccCCcceeeeEeccCCHHHHHHHHH
Q psy11418 281 RVYEVGRQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHLTE 322 (553)
Q Consensus 281 rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~e 322 (553)
|+.++|+|||+|.+.. .+..||||.|.+ .|.+-+++.+.+.
T Consensus 188 r~aq~g~~~RnE~s~~~gL~RvReF~q~e~h-iF~~peq~~~e~~ 231 (456)
T PRK04173 188 GIAQIGKSFRNEITPRNFIFRTREFEQMELE-FFVKPGTDNEWFA 231 (456)
T ss_pred eeeEEchhHhCccCCCCCceeeceeeeeEEE-EEECcChHHHHHH
Confidence 8999999999998763 255899999998 5776444433333
No 150
>PLN02320 seryl-tRNA synthetase
Probab=96.79 E-value=0.0055 Score=67.43 Aligned_cols=112 Identities=13% Similarity=0.199 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhhhCCeEEEecceeccc---cCCCCC------cceeeccCCCCcceeeeeCHHH-----HHHHHHH-
Q psy11418 212 IVRAQIIAYVRRYLDSLGFLEVETPMMNMI---AGGATA------KPFVTHHNDLNMDLYMRIAPEL-----YLKMLVV- 276 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~~gF~EV~TPil~~~---~gga~a------~~F~t~~~~~~~~~~L~~Spql-----~lk~l~~- 276 (553)
++..++++.+++++.++||.||.||.|... .|.+.. ..|.+ -+.++||--..|. |....+.
T Consensus 234 ~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~i----e~ed~~Li~TaE~Pl~~~~~~~ils~ 309 (502)
T PLN02320 234 LLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSI----DGSDQCLIGTAEIPVGGIHMDSILLE 309 (502)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEE----CCCceEEeecccccccccccccccCH
Confidence 466788999999999999999999999522 221111 11211 1456787533332 3222111
Q ss_pred ccC-CcEEEEccccccCCC----CCC---ccCCcceeeeEeccCCHHHHHHHHHHHHhcc
Q psy11418 277 GGL-DRVYEVGRQFRNEGI----DLT---HNPEFTTCEFYMAYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 277 ~g~-~rVfei~~~FR~E~~----~~~---H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~ 328 (553)
..+ -|++++|+|||.|-+ +++ +.-+|++.|... |..-++..+..++|+..+
T Consensus 310 ~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~~peqs~~e~e~ll~~~ 368 (502)
T PLN02320 310 SALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-ICRPEESESFHEELIQIE 368 (502)
T ss_pred hhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EECHHHHHHHHHHHHHHH
Confidence 112 289999999999976 442 666799999987 665566666656555444
No 151
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with
Probab=96.77 E-value=0.0018 Score=54.17 Aligned_cols=61 Identities=11% Similarity=0.139 Sum_probs=46.4
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC-----CCceeEEeeeEEEEec
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-----KGELSIIPKKLTLLSP 389 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~-----~g~~El~~~~i~vl~~ 389 (553)
|-.+-++.+.+|++.+.... ++ +..++.|+.||+|.|+|.+.+++ ++++||.++++++|++
T Consensus 19 Fi~LrD~~~~iQ~v~~~~~~---~~-~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~Ei~~~~i~vl~~ 84 (84)
T cd04323 19 FLVLRDGTGFLQCVLSKKLV---TE-FYDAKSLTQESSVEVTGEVKEDPRAKQAPGGYELQVDYLEIIGE 84 (84)
T ss_pred EEEEEcCCeEEEEEEcCCcc---hh-HHHHhcCCCcCEEEEEEEEEECCcccCCCCCEEEEEEEEEEEcC
Confidence 34556677778887764321 22 56778999999999999998764 5679999999999974
No 152
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=96.72 E-value=0.0096 Score=48.66 Aligned_cols=73 Identities=25% Similarity=0.373 Sum_probs=57.5
Q ss_pred EEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEE
Q psy11418 93 LSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTL 172 (553)
Q Consensus 93 V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~i 172 (553)
|.|.|-|.+.+..| .=.|+.|.|+++.|.|++-+... + .....+..||-|.|.|.+.- +.|.+.+.+.++++
T Consensus 1 v~v~GeVs~~~~~~-GHvyfsLkD~~a~i~cv~f~~~~-----~-~~~~~l~~Gd~V~v~G~v~~-~~G~~ql~v~~i~~ 72 (73)
T cd04487 1 VHIEGEVVQIKQTS-GPTIFTLRDETGTVWAAAFEEAG-----V-RAYPEVEVGDIVRVTGEVEP-RDGQLQIEVESLEV 72 (73)
T ss_pred CEEEEEEeccccCC-CCEEEEEEcCCEEEEEEEEchhc-----c-CCcCCCCCCCEEEEEEEEec-CCeEEEEEEeeEEE
Confidence 46888888764444 44799999999999999876531 1 12346899999999999875 89999999999987
Q ss_pred e
Q psy11418 173 L 173 (553)
Q Consensus 173 l 173 (553)
|
T Consensus 73 ~ 73 (73)
T cd04487 73 L 73 (73)
T ss_pred C
Confidence 5
No 153
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=96.69 E-value=0.002 Score=69.57 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=45.4
Q ss_pred CcEEEEccccccCC-CCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 280 DRVYEVGRQFRNEG-IDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 280 ~rVfei~~~FR~E~-~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
-|+|++|+|||+|. .|++|+++|+|+|.-++.. ++.|++.+++.+++.+
T Consensus 208 iRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 208 LKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred eEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 39999999999995 6999999999999998876 6999999999999998
No 154
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=96.69 E-value=0.0026 Score=52.77 Aligned_cols=57 Identities=16% Similarity=0.270 Sum_probs=43.7
Q ss_pred cccccCC--CcccccccccccChHHHHHhhcccCCccEEEEEcccccCCC--CceeEEeeeEEEEe
Q psy11418 327 GRKEDRN--RPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK--GELSIIPKKLTLLS 388 (553)
Q Consensus 327 ~~~~~~~--~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~--g~~El~~~~i~vl~ 388 (553)
.+-++.. .+|++++... .. +..+++|+.||+|.|+|.+.+++. +++||.++++++++
T Consensus 21 ~LrD~s~~~~lQvv~~~~~----~~-~~~~~~l~~gs~V~v~G~v~~~~~~~~~~El~~~~i~il~ 81 (82)
T cd04318 21 ELNDGSCLKNLQVVVDKEL----TN-FKEILKLSTGSSIRVEGVLVKSPGAKQPFELQAEKIEVLG 81 (82)
T ss_pred EEECCCCccCEEEEEeCcc----cC-HHHHhcCCCceEEEEEEEEEeCCCCCCCEEEEEEEEEEec
Confidence 3445554 4888876532 11 456788999999999999988775 89999999999986
No 155
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=96.46 E-value=0.025 Score=62.15 Aligned_cols=118 Identities=10% Similarity=0.067 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHh-hhCCeEEEecceeccc---cCCCCC-----cceee-ccC------------------------
Q psy11418 210 KFIVRAQIIAYVRRYL-DSLGFLEVETPMMNMI---AGGATA-----KPFVT-HHN------------------------ 255 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl-~~~gF~EV~TPil~~~---~gga~a-----~~F~t-~~~------------------------ 255 (553)
..++..++.+.+.+.+ .+.||.||-+|.|.+. .+.+.. ..|.+ +..
T Consensus 222 ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L 301 (520)
T TIGR00415 222 ITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKL 301 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhccccccccccccccccc
Confidence 4457778888887655 5669999999999642 111111 22322 110
Q ss_pred --C-CCcceeeeeCHHHHHHHHHHccC-------CcEEEEc-cccccCCCCC---CccCCcceeeeEeccCCHHHHHHHH
Q psy11418 256 --D-LNMDLYMRIAPELYLKMLVVGGL-------DRVYEVG-RQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHLT 321 (553)
Q Consensus 256 --~-~~~~~~L~~Spql~lk~l~~~g~-------~rVfei~-~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~ 321 (553)
. -+.+++|+-+.+..+=.+..+-+ -|+|++. +|||.|..++ .+.-||+|.|.-. +++.++..+..
T Consensus 302 ~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tpEea~e~~ 380 (520)
T TIGR00415 302 KNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEPEETEEIR 380 (520)
T ss_pred cccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCHHHHHHHH
Confidence 0 11267799988887765544333 2788844 7999999766 4788999999999 89988888888
Q ss_pred HHHHhcc
Q psy11418 322 EDLISGR 328 (553)
Q Consensus 322 e~li~~~ 328 (553)
++++...
T Consensus 381 e~mle~~ 387 (520)
T TIGR00415 381 DKTLELA 387 (520)
T ss_pred HHHHHHH
Confidence 8888555
No 156
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=96.43 E-value=0.022 Score=46.25 Aligned_cols=72 Identities=24% Similarity=0.380 Sum_probs=52.6
Q ss_pred EEEEEEeee----cCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeE
Q psy11418 95 VAGRVHAIR----ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKL 170 (553)
Q Consensus 95 v~Gri~~~R----~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i 170 (553)
+.|.|.+++ +.|+.++++.|.|+++.+.+++-.+ .|......+..|..|.|.|.+... .|..++.+.++
T Consensus 2 i~g~v~~~~~~~~k~g~~~~~~~l~D~tg~~~~~~f~~------~~~~~~~~l~~g~~v~v~G~v~~~-~~~~~l~~~~i 74 (84)
T cd04485 2 VAGLVTSVRRRRTKKGKRMAFVTLEDLTGSIEVVVFPE------TYEKYRDLLKEDALLLVEGKVERR-DGGLRLIAERI 74 (84)
T ss_pred EEEEEEEeEEEEcCCCCEEEEEEEEeCCCeEEEEECHH------HHHHHHHHhcCCCEEEEEEEEEec-CCceEEEeecc
Confidence 456665543 3354589999999999999998753 233345678999999999999764 36788887766
Q ss_pred EEe
Q psy11418 171 TLL 173 (553)
Q Consensus 171 ~il 173 (553)
..+
T Consensus 75 ~~~ 77 (84)
T cd04485 75 EDL 77 (84)
T ss_pred ccH
Confidence 544
No 157
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=96.30 E-value=0.0096 Score=63.56 Aligned_cols=126 Identities=15% Similarity=0.134 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccc----cC-CC--CCcceeeccCCCCcceeeeeCHHHHHHHHHHcc----C
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----AG-GA--TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG----L 279 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~g-ga--~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g----~ 279 (553)
.+....|.+.+++.|..+||..|+||+|.+. .+ |+ ..+.|.+. +..+..+.||.-.....-+..+.. -
T Consensus 17 ~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~-d~~g~~l~LRpD~T~pVaR~~~~~~~~~P 95 (390)
T COG3705 17 ARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLE-DETGGRLGLRPDFTIPVARIHATLLAGTP 95 (390)
T ss_pred HhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEe-cCCCCeEEecccccHHHHHHHHHhcCCCC
Confidence 3566777888899999999999999999742 22 33 25778775 555666999977776666655543 3
Q ss_pred CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCccccc
Q psy11418 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMA 339 (553)
Q Consensus 280 ~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~ 339 (553)
.|+++.|++||+.........||+|.-+|.-+.+ --+++.++-..++.+ ++...++..
T Consensus 96 ~Rl~Y~G~Vfr~~~~~~g~~~Ef~QaGiEllG~~~~~ADaEvi~la~~~L~~~--gl~~~~l~L 157 (390)
T COG3705 96 LRLSYAGKVFRAREGRHGRRAEFLQAGIELLGDDSAAADAEVIALALAALKAL--GLADLKLEL 157 (390)
T ss_pred ceeeecchhhhcchhccCcccchhhhhhHHhCCCcchhhHHHHHHHHHHHHHc--CCcCeEEEe
Confidence 5899999999999333356669999999986553 566777777777776 455555443
No 158
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=96.28 E-value=0.044 Score=46.52 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=58.2
Q ss_pred EEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEE
Q psy11418 93 LSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTL 172 (553)
Q Consensus 93 V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~i 172 (553)
|++.|+|.++...+.. .=+.|.|++|.|-+.+........ ......+..|+.|.|.|.+..- .|...|.+..+..
T Consensus 2 v~~vG~V~~~~~~~~~-~~~tL~D~TG~I~~~~W~~~~~~~---~~~~~~~~~g~~v~v~G~v~~~-~g~~ql~i~~i~~ 76 (95)
T cd04478 2 VTLVGVVRNVEEQSTN-ITYTIDDGTGTIEVRQWLDDDNDD---SSEVEPIEEGTYVRVFGNLKSF-QGKKSIMAFSIRP 76 (95)
T ss_pred EEEEEEEEeeeEcccE-EEEEEECCCCcEEEEEeCCCCCcc---cccccccccCCEEEEEEEEccc-CCeeEEEEEEEEE
Confidence 7899999999988844 447899999999999876532100 0124579999999999998643 4778888888776
Q ss_pred ec
Q psy11418 173 LS 174 (553)
Q Consensus 173 l~ 174 (553)
+.
T Consensus 77 v~ 78 (95)
T cd04478 77 VT 78 (95)
T ss_pred eC
Confidence 54
No 159
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=96.27 E-value=0.033 Score=48.18 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=61.1
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHh-ccCCCCcEEEEEeecccc-cCCceeEeee
Q psy11418 91 VTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDL-VKIKRGDIIGVTGSPGKT-KKGELSIIPK 168 (553)
Q Consensus 91 ~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~-~~l~~gd~V~v~G~~~~t-~~ge~~l~~~ 168 (553)
..|.|.|-|.+.+.++++-+|++|.|+...++|++-.... .... ..+..|+-|.|.|.+.-- +.|.+++.+.
T Consensus 22 ~~vwV~GEIs~~~~~~~gh~YftLkD~~a~i~~~~~~~~~------~~i~~~~l~~G~~V~v~g~~~~y~~~G~~sl~v~ 95 (99)
T PF13742_consen 22 PNVWVEGEISNLKRHSSGHVYFTLKDEEASISCVIFRSRA------RRIRGFDLKDGDKVLVRGRVSFYEPRGSLSLIVE 95 (99)
T ss_pred CCEEEEEEEeecEECCCceEEEEEEcCCcEEEEEEEHHHH------hhCCCCCCCCCCEEEEEEEEEEECCCcEEEEEEE
Confidence 4599999999999955478999999999999999987532 1222 468999999999998654 5778999998
Q ss_pred eEE
Q psy11418 169 KLT 171 (553)
Q Consensus 169 ~i~ 171 (553)
+++
T Consensus 96 ~i~ 98 (99)
T PF13742_consen 96 DID 98 (99)
T ss_pred EeE
Confidence 874
No 160
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.08 E-value=0.074 Score=57.48 Aligned_cols=114 Identities=18% Similarity=0.257 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhhhCCeEEEecceecc---ccCCCCCcceeeccCCC---CcceeeeeCHHHHHHHHHHcc------C
Q psy11418 212 IVRAQIIAYVRRYLDSLGFLEVETPMMNM---IAGGATAKPFVTHHNDL---NMDLYMRIAPELYLKMLVVGG------L 279 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~~gF~EV~TPil~~---~~gga~a~~F~t~~~~~---~~~~~L~~Spql~lk~l~~~g------~ 279 (553)
++--++++.+=++..++||.|+.+|.|.. ..|.+-..-|.- +.| +.++||--..|..+--+..+- +
T Consensus 175 ~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e--~~y~v~~~~~~LipTaEvpl~~l~~~Eil~~~~L 252 (429)
T COG0172 175 RLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEE--DLYKVEDPDLYLIPTAEVPLTNLHRDEILDEEDL 252 (429)
T ss_pred HHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcc--cceEecCCCEEEEecchhhhHHhhcccccccccC
Confidence 45556677777788899999999999963 233332222321 111 236899888777766554321 2
Q ss_pred -CcEEEEccccccCCCC----CC---ccCCcceeeeEeccCC-------HHHHHHHHHHHHhcc
Q psy11418 280 -DRVYEVGRQFRNEGID----LT---HNPEFTTCEFYMAYAD-------YNDLMHLTEDLISGR 328 (553)
Q Consensus 280 -~rVfei~~~FR~E~~~----~~---H~~EFt~lE~e~a~~~-------~~~~m~~~e~li~~~ 328 (553)
-+.+-.+||||.|... ++ +.-+|..+|.-. ++. ++.|...+|++++.+
T Consensus 253 P~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~-~~~Pe~S~~~~E~m~~~ae~il~~L 315 (429)
T COG0172 253 PIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVV-ITKPEESEEELEEMLGNAEEVLQEL 315 (429)
T ss_pred CeeeEEEChhhhcccccccccccceeeeeeeeeEEEEE-EeCcchhHHHHHHHHHHHHHHHHHh
Confidence 2677789999999775 43 566799988765 444 455555555555444
No 161
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco
Probab=96.01 E-value=0.06 Score=41.95 Aligned_cols=70 Identities=21% Similarity=0.331 Sum_probs=53.4
Q ss_pred EEEEEEEeeecCC--CceEEEEEEeCC-EEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeE
Q psy11418 94 SVAGRVHAIRESG--TKLMFYDLRGEG-LKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKL 170 (553)
Q Consensus 94 ~v~Gri~~~R~~g--~kl~Fi~l~d~~-~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i 170 (553)
++.|.|.+++... ++.+++.|.|++ +.+.+++..+.. ......+..|+.|.|.|.+... .+...+.+.++
T Consensus 1 ~v~g~v~~~~~~~~~~~~~~~~l~D~~~~~i~~~~~~~~~------~~~~~~~~~g~~v~v~g~v~~~-~~~~~l~~~~~ 73 (75)
T cd03524 1 TIVGIVVAVEEIRTEGKVLIFTLTDGTGGTIRVTLFGELA------EELENLLKEGQVVYIKGKVKKF-RGRLQLIVESI 73 (75)
T ss_pred CeEEEEEeecccccCCeEEEEEEEcCCCCEEEEEEEchHH------HHHHhhccCCCEEEEEEEEEec-CCeEEEEeeee
Confidence 3678888887654 478999999999 999999987532 2234569999999999999753 56677776644
No 162
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.98 E-value=0.0053 Score=68.88 Aligned_cols=111 Identities=21% Similarity=0.298 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHH-----HHHHHHHHcc
Q psy11418 212 IVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPE-----LYLKMLVVGG 278 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spq-----l~lk~l~~~g 278 (553)
.+|+.+.+.+|.-..+.||.||.||.|.... .|- ....|.+. .-+..+.|+...- .|+..+-..-
T Consensus 221 ~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~--~~~~~~~lKpmNCpgh~~ifk~~~~SYR 298 (589)
T COG0441 221 TIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTE--SDDREYALKPMNCPGHILIFKSGLRSYR 298 (589)
T ss_pred cHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccccceeec--cCChhheeeeccCHhHHHHHhcCCccee
Confidence 5788899999999999999999999995321 111 01222221 1123444553322 2222111000
Q ss_pred -C-CcEEEEccccccCCCCC----CccCCcceeeeEeccCCHHHHHHHHHHHH
Q psy11418 279 -L-DRVYEVGRQFRNEGIDL----THNPEFTTCEFYMAYADYNDLMHLTEDLI 325 (553)
Q Consensus 279 -~-~rVfei~~~FR~E~~~~----~H~~EFt~lE~e~a~~~~~~~m~~~e~li 325 (553)
+ -|++|+|.|||+|.+.. +..-+|||=|.-. |...+.+.+-+.+.+
T Consensus 299 ~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHi-fc~~dQi~~E~~~~~ 350 (589)
T COG0441 299 ELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHI-FCTPDQIKDEFKGIL 350 (589)
T ss_pred ccchhhhhcceeecccCcchhhccccccceeecccce-eccHHHHHHHHHHHH
Confidence 1 28999999999999986 5789999999877 555555555444433
No 163
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=95.86 E-value=0.13 Score=41.86 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=49.7
Q ss_pred cCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEecc
Q psy11418 104 ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSP 175 (553)
Q Consensus 104 ~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~ 175 (553)
+.|+.++++.|.|++|.+.+++-.+.. .....+..|..|.|.|.+.. ..|..++.+.++..+..
T Consensus 15 k~g~~~~~~~l~D~tg~i~~~~f~~~~-------~~~~~l~~g~~v~v~G~v~~-~~~~~~l~~~~i~~l~~ 78 (83)
T cd04492 15 KNGKPYLALTLQDKTGEIEAKLWDASE-------EDEEKFKPGDIVHVKGRVEE-YRGRLQLKIQRIRLVTE 78 (83)
T ss_pred cCCCcEEEEEEEcCCCeEEEEEcCCCh-------hhHhhCCCCCEEEEEEEEEE-eCCceeEEEEEEEECCc
Confidence 446578999999999999999976431 12457999999999999965 46678888888876653
No 164
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=95.84 E-value=0.05 Score=61.31 Aligned_cols=111 Identities=13% Similarity=0.112 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhhhCCeEEEecceeccccC------CCCC-cceeeccCCC-CcceeeeeCH--HHHHHHHHHccC-----
Q psy11418 215 AQIIAYVRRYLDSLGFLEVETPMMNMIAG------GATA-KPFVTHHNDL-NMDLYMRIAP--ELYLKMLVVGGL----- 279 (553)
Q Consensus 215 s~i~~~ir~fl~~~gF~EV~TPil~~~~g------ga~a-~~F~t~~~~~-~~~~~L~~Sp--ql~lk~l~~~g~----- 279 (553)
..+.+.+|++|...||.|+-|..+.+... -... .+... .|-. ..--+||.|. .|..- +....
T Consensus 362 ~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~i~l-~NPls~e~svLRtsLlpgLL~~--~~~N~~~~~~ 438 (552)
T PRK09616 362 EKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDYVEV-LNPISEDYTVVRTSLLPSLLEF--LSNNKHREYP 438 (552)
T ss_pred HHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCCCCeEEE-cCCCccchheEeccchHHHHHH--HHhccCCCCC
Confidence 34567789999999999999999964311 0111 12222 2322 2335688774 43322 22221
Q ss_pred CcEEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 280 ~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
-|+||||+||+.+..+..|..|++++.+-++.. |+.|+...+|.++..+
T Consensus 439 ~~lFEiG~Vf~~~~~~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~l 489 (552)
T PRK09616 439 QKIFEIGDVVLIDESTETGTRTERKLAAAIAHSEASFTEIKSVVQALLREL 489 (552)
T ss_pred eeEEEeeEEEecCCccccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 289999999998765556878999999888874 8999999999999766
No 165
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende
Probab=95.84 E-value=0.052 Score=46.27 Aligned_cols=74 Identities=22% Similarity=0.278 Sum_probs=56.0
Q ss_pred EEEEEEEeeecC--CCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEE
Q psy11418 94 SVAGRVHAIRES--GTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLT 171 (553)
Q Consensus 94 ~v~Gri~~~R~~--g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~ 171 (553)
+|.|.|.+++.+ | .=+|+.|.|+++.|.+++-+..- .+......|..||-|.|.|.+..-. .|.++.++
T Consensus 2 ~v~GeVs~~~~~~~s-GH~yFtlkD~~~~i~cv~f~~~g----~~~~~~~~l~~Gd~V~v~G~v~~y~----ql~ve~l~ 72 (91)
T cd04482 2 RVTGKVVEEPRTIEG-GHVFFKISDGTGEIDCAAYEPTK----EFRDVVRLLIPGDEVTVYGSVRPGT----TLNLEKLR 72 (91)
T ss_pred EEEEEEeCCeecCCC-CCEEEEEECCCcEEEEEEECccc----ccccccCCCCCCCEEEEEEEEecCC----EEEEEEEE
Confidence 689999988653 4 45789999999999998876431 1223456799999999999987544 68889988
Q ss_pred EeccC
Q psy11418 172 LLSPC 176 (553)
Q Consensus 172 il~~~ 176 (553)
+++-.
T Consensus 73 ~~glg 77 (91)
T cd04482 73 VIRLA 77 (91)
T ss_pred ECCCc
Confidence 87654
No 166
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=95.73 E-value=0.025 Score=62.66 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHH-hhhCCeEEEecceecccc---CCCC-----Ccceeecc-----CCC------------------
Q psy11418 210 KFIVRAQIIAYVRRY-LDSLGFLEVETPMMNMIA---GGAT-----AKPFVTHH-----NDL------------------ 257 (553)
Q Consensus 210 ~~~~rs~i~~~ir~f-l~~~gF~EV~TPil~~~~---gga~-----a~~F~t~~-----~~~------------------ 257 (553)
-.++..++.+.+++. +.+.||.||-||.|.+.. +.+. ...|.+.. +.+
T Consensus 222 Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~~ 301 (517)
T PRK00960 222 MTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEKL 301 (517)
T ss_pred HHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhcccccccccccc
Confidence 456778888889877 466699999999995321 1111 12232211 000
Q ss_pred -----CcceeeeeCHHHHHHHHHHccC----C---cEEE-EccccccCCCCC---CccCCcceeeeEeccCCHHHHHHHH
Q psy11418 258 -----NMDLYMRIAPELYLKMLVVGGL----D---RVYE-VGRQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHLT 321 (553)
Q Consensus 258 -----~~~~~L~~Spql~lk~l~~~g~----~---rVfe-i~~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~ 321 (553)
+..+.|+.+..-+.-.+..+.. + |+|+ .|+|||+|...+ .+.-||+|.|.. .+++.+++.+..
T Consensus 302 ~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~tpEqs~ee~ 380 (517)
T PRK00960 302 KEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGTPEQVEEIR 380 (517)
T ss_pred ccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeCHHHHHHHH
Confidence 1122344443333222222221 1 7899 569999996444 478899999999 788888888888
Q ss_pred HHHHhcc
Q psy11418 322 EDLISGR 328 (553)
Q Consensus 322 e~li~~~ 328 (553)
++++.+.
T Consensus 381 e~ll~~~ 387 (517)
T PRK00960 381 DELLKYA 387 (517)
T ss_pred HHHHHHH
Confidence 8887544
No 167
>PRK07373 DNA polymerase III subunit alpha; Reviewed
Probab=95.61 E-value=0.067 Score=58.62 Aligned_cols=78 Identities=9% Similarity=0.175 Sum_probs=62.5
Q ss_pred CCcEEEEEEEEEeeecC----CCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 89 ENVTLSVAGRVHAIRES----GTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~----g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
.++.|+|+|.|.++|.. |+.++|+.|.|.+|.+.+++-.+. |......|..|.+|.|+|++.. ..+++.
T Consensus 279 ~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~ie~vvFp~~------y~~~~~~l~~~~~v~v~G~v~~-~~~~~~ 351 (449)
T PRK07373 279 EKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQSEAVVFPKS------YERISELLQVDARLIIWGKVDR-RDDQVQ 351 (449)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHHH------HHHHHHHhccCCEEEEEEEEEe-cCCeEE
Confidence 46789999999999844 556999999999999999998653 4455667999999999999975 346677
Q ss_pred EeeeeEEEe
Q psy11418 165 IIPKKLTLL 173 (553)
Q Consensus 165 l~~~~i~il 173 (553)
+.+.++.-+
T Consensus 352 liv~~i~~l 360 (449)
T PRK07373 352 LIVEDAEPI 360 (449)
T ss_pred EEEeEeecH
Confidence 887777543
No 168
>KOG2324|consensus
Probab=95.52 E-value=0.04 Score=57.45 Aligned_cols=130 Identities=18% Similarity=0.238 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceecccc-----C---CCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCC--
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-----G---GATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD-- 280 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~-----g---ga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~-- 280 (553)
+|.-.++++.++.-|++-|=.+|.-|+|++.+ | +-+.+.|.. ++.-|+.+.|...-|=-.-.+|+.-..
T Consensus 52 ~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl-~Dr~gkq~cL~pThEE~iT~lmat~~~ls 130 (457)
T KOG2324|consen 52 LRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRL-HDRKGKQMCLTPTHEEDITALMATYIPLS 130 (457)
T ss_pred HHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEe-eccCCCEeccCCchHHHHHHHHHhcCccc
Confidence 35667888999999999999999999997532 1 123455654 477888999987766666666654443
Q ss_pred ------cEEEEccccccCCCCC---CccCCcceeeeEeccCCHHHHHHHH---HHHHhcccccCCCccccccc
Q psy11418 281 ------RVYEVGRQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHLT---EDLISGRKEDRNRPCVMANA 341 (553)
Q Consensus 281 ------rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~---e~li~~~~~~~~~iqv~~n~ 341 (553)
+||+||+-||+|---. -+-.||.|=|+|.--.|-++.|..- .+.-..+++.++.+.|..++
T Consensus 131 ykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~qTy~~v~~aY~~iFkqL~~pfVkv~A 203 (457)
T KOG2324|consen 131 YKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQTYQLVDQAYDRIFKQLGLPFVKVWA 203 (457)
T ss_pred cccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee
Confidence 8999999999996543 3667999999998555655555432 22334566677888777766
No 169
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=95.48 E-value=0.056 Score=58.76 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=39.5
Q ss_pred CCCcceeeeeCHHHHHHHHHHccCC-------cEEEEccccccCCCCCCccCCcceeeeEecc
Q psy11418 256 DLNMDLYMRIAPELYLKMLVVGGLD-------RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAY 311 (553)
Q Consensus 256 ~~~~~~~L~~Spql~lk~l~~~g~~-------rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~ 311 (553)
|++.+.-||.-.--+.-++|-.+.. ++...|.|||.+.+|++|.|-|.|+|.-..+
T Consensus 103 Yi~~~~lLRTHTSa~q~~~~~~~~~~~~~~~~~~i~~G~VYRrD~iDatH~p~FHQ~EG~~v~ 165 (460)
T TIGR00469 103 YINEQHLLRAHTSAHELECFQGGLDDSDNIKSGFLISADVYRRDEIDKTHYPVFHQADGAAIR 165 (460)
T ss_pred EecCCceeCCCCcHHHHHHHHhccccCCCcceeeEeecceeeCCCCccccCccceeeEEEEEe
Confidence 4566777884333333334444443 3888999999999999999999999954443
No 170
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=95.23 E-value=0.035 Score=61.96 Aligned_cols=28 Identities=21% Similarity=0.548 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHh-hhCCeEEEecceec
Q psy11418 212 IVRAQIIAYVRRYL-DSLGFLEVETPMMN 239 (553)
Q Consensus 212 ~~rs~i~~~ir~fl-~~~gF~EV~TPil~ 239 (553)
.++..|.+..|++| ...|++||+||+|+
T Consensus 38 ~lk~ni~~~wr~~~v~~~~~~ei~~~~i~ 66 (551)
T TIGR00389 38 VLKNNIKNAWRKFFIKNERVLEIDTPIIT 66 (551)
T ss_pred HHHHHHHHHHHHHHHhcCCceEeeccccC
Confidence 57888999999988 57789999999995
No 171
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=95.23 E-value=0.14 Score=43.74 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=52.2
Q ss_pred EEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCH--------------HHHHHHhccCCCCcEEEEEeecccccC
Q psy11418 95 VAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSE--------------EEFASDLVKIKRGDIIGVTGSPGKTKK 160 (553)
Q Consensus 95 v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~--------------~~~~~~~~~l~~gd~V~v~G~~~~t~~ 160 (553)
|.|+|.+++... .-.-+.|.|++|.|-+++-......+ .........+..|++|.|.|.+.. =.
T Consensus 2 ivG~V~sv~~~~-~~~~~tLdDgTG~Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~vvrV~G~i~~-fr 79 (92)
T cd04483 2 ILGTVVSRRERE-TFYSFGVDDGTGVVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSIRT-YR 79 (92)
T ss_pred eEEEEEEEEecC-CeEEEEEecCCceEEEEEEcCcCcccccccccccccccccccccccccccCCCCEEEEEEEEec-cC
Confidence 689999999887 45567899999999999876532100 000023456999999999999864 34
Q ss_pred CceeEeeeeEE
Q psy11418 161 GELSIIPKKLT 171 (553)
Q Consensus 161 ge~~l~~~~i~ 171 (553)
|...|.++.+.
T Consensus 80 g~~ql~i~~~~ 90 (92)
T cd04483 80 GEREINASVVY 90 (92)
T ss_pred CeeEEEEEEEE
Confidence 55666666553
No 172
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit. PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain.
Probab=95.15 E-value=0.22 Score=41.26 Aligned_cols=70 Identities=24% Similarity=0.404 Sum_probs=50.7
Q ss_pred EEEEEEEEeeecCC-CceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeE
Q psy11418 93 LSVAGRVHAIRESG-TKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKL 170 (553)
Q Consensus 93 V~v~Gri~~~R~~g-~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i 170 (553)
|.++|-|.++|... ++- |+.|.|.+|.+.+++..+.+ +.| .....|..|.+|.|+|.+.. .++ .+.+.++
T Consensus 2 v~i~GiI~~v~~TK~g~~-~~~leD~~G~~Ev~~F~~~~---~~~-~~~~~l~~d~~v~v~g~v~~--~~~-~l~~~~I 72 (79)
T cd04490 2 VSIIGMVNDVRSTKNGHR-IVELEDTTGRITVLLTKDKE---ELF-EEAEDILPDEVIGVSGTVSK--DGG-LIFADEI 72 (79)
T ss_pred EEEEEEEeEEEEcCCCCE-EEEEECCCCEEEEEEeCchh---hhh-hhhhhccCCCEEEEEEEEec--CCC-EEEEEEe
Confidence 67899999987222 145 99999999999999987653 200 34567899999999999954 244 5555543
No 173
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=94.93 E-value=0.17 Score=61.37 Aligned_cols=81 Identities=11% Similarity=0.202 Sum_probs=64.5
Q ss_pred CCcEEEEEEEEEeeecC----CCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 89 ENVTLSVAGRVHAIRES----GTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~----g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
.+..|+|+|.|.++|.. |+.++|+.|.|.+|.+.+++..+ .|......|..|.+|.|+|++.....+.+.
T Consensus 990 ~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~~e~~vfp~------~~~~~~~~l~~~~~~~v~g~v~~~~~~~~~ 1063 (1151)
T PRK06826 990 DGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGTVEVIVFPK------VYEKYRSLLNEDNIVLIKGRVSLREDEEPK 1063 (1151)
T ss_pred CCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEEEecCCCceE
Confidence 46789999999998843 44599999999999999999865 344556679999999999999754456688
Q ss_pred EeeeeEEEecc
Q psy11418 165 IIPKKLTLLSP 175 (553)
Q Consensus 165 l~~~~i~il~~ 175 (553)
+.+.++.-+..
T Consensus 1064 ~~~~~~~~l~~ 1074 (1151)
T PRK06826 1064 LICEEIEPLVI 1074 (1151)
T ss_pred EEEeeeecHhh
Confidence 88888765543
No 174
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA. Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A.
Probab=94.72 E-value=0.11 Score=52.67 Aligned_cols=76 Identities=14% Similarity=0.250 Sum_probs=55.7
Q ss_pred cEEEEEEEEEeeecC----CCceEEEEEEeCCE--EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 91 VTLSVAGRVHAIRES----GTKLMFYDLRGEGL--KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 91 ~~V~v~Gri~~~R~~----g~kl~Fi~l~d~~~--~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
..|+|.|.|.++.-. . +-+|+.|-|++| .|.|++....... +......+ .|++|.|+|.+. .+..+
T Consensus 67 ~~v~i~G~Vv~~~~~~~~~~-~~~~l~iDD~Sg~~~i~~~~~~~~~~~---~~l~~~~~-~G~~V~VkG~vs---r~~~q 138 (256)
T PF10451_consen 67 RWVRIVGVVVGIDYKWIENE-DRIILTIDDSSGANTIECKCSKSSYLS---MGLPINDL-IGKVVEVKGTVS---RNERQ 138 (256)
T ss_dssp -EEEEEEEEEEEEEEE-BBT-CEEEEEEE-SSCS-EEEEEEEHHHHHC---CCHHCTT--TT-EEEEEEEEE---SSSEE
T ss_pred EEEEEEEEEEEEEEEeeccc-ceEEEEEeCCCCceeEEEEEEcccccc---cCCCccCC-CCcEEEEEEEEc---cCcEE
Confidence 469999999999855 5 678999999999 8999998753210 00123445 999999999998 77888
Q ss_pred EeeeeEEEec
Q psy11418 165 IIPKKLTLLS 174 (553)
Q Consensus 165 l~~~~i~il~ 174 (553)
|.++.+.++.
T Consensus 139 l~ve~i~~~~ 148 (256)
T PF10451_consen 139 LDVERIELVR 148 (256)
T ss_dssp EEEEEEEEET
T ss_pred EEEEEEEccC
Confidence 9999888764
No 175
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=94.67 E-value=0.037 Score=59.73 Aligned_cols=80 Identities=16% Similarity=0.345 Sum_probs=56.1
Q ss_pred CChhhhccccceeeecChHHHHHHHH-----HHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcce---eeeeecCCCC
Q psy11418 402 KDKETRFRQRYLDLMINERIRHKFIV-----RAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATA---KPFVTHHNDL 471 (553)
Q Consensus 402 ~~~e~~~~~R~L~lR~~~~~~~~l~~-----Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~---~~~~t~~~~~ 471 (553)
.+.|.++.+| | ++..++++.. .+.+.++||++|...||.||.||+|+... +..+. .++....-..
T Consensus 180 ~~~e~~l~~r----r-~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~i 254 (417)
T PRK09537 180 KELESELVSR----R-KNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRV 254 (417)
T ss_pred hhHHHHHHHh----c-chhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheee
Confidence 3557777777 6 9999999999 99999999999999999999999997542 11110 0010000013
Q ss_pred CcceeEE--eChhHHHH
Q psy11418 472 NMDLYMR--IAPELYLK 486 (553)
Q Consensus 472 ~~~~yL~--~Spel~~k 486 (553)
+...+|+ ..|.++..
T Consensus 255 deel~LRpsLtPsLlr~ 271 (417)
T PRK09537 255 DKNFCLRPMLAPGLYNY 271 (417)
T ss_pred CCceEehhhhHHHHHHH
Confidence 4568888 45887653
No 176
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=94.51 E-value=0.062 Score=42.92 Aligned_cols=54 Identities=30% Similarity=0.406 Sum_probs=43.7
Q ss_pred ccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEE
Q psy11418 328 RKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLL 387 (553)
Q Consensus 328 ~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl 387 (553)
+-++.+.+++++.. +.+....+.|..|+.|.|+|.+...+.++++|.++++++|
T Consensus 22 l~D~tg~i~~~~~~------~~~~~~~~~l~~g~~v~v~G~v~~~~~~~~~l~~~~i~~l 75 (75)
T PF01336_consen 22 LEDGTGSIQVVFFN------EEYERFREKLKEGDIVRVRGKVKRYNGGELELIVPKIEIL 75 (75)
T ss_dssp EEETTEEEEEEEET------HHHHHHHHTS-TTSEEEEEEEEEEETTSSEEEEEEEEEEE
T ss_pred EEECCccEEEEEcc------HHhhHHhhcCCCCeEEEEEEEEEEECCccEEEEECEEEEC
Confidence 44566667777664 5677888999999999999999988777899999999876
No 177
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=94.50 E-value=0.37 Score=42.12 Aligned_cols=70 Identities=14% Similarity=0.257 Sum_probs=48.9
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeee
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPK 168 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~ 168 (553)
.+..|++.|.|.+.-..- + +.++|++|.|+|-++.+... -..+++++-|.|.|.+.+.- +..+|.|.
T Consensus 33 Dd~~V~L~G~Iv~~l~~d-~---Y~F~D~TG~I~VeId~~~w~--------g~~vt~~~~Vri~GeVDk~~-~~~~IdV~ 99 (103)
T PF04076_consen 33 DDTPVTLEGNIVKQLGDD-K---YLFRDATGEIEVEIDDDVWR--------GQTVTPDDKVRISGEVDKDW-NKTEIDVD 99 (103)
T ss_dssp SSEEEEEEEEEEEEEETT-E---EEEEETTEEEEEE--GGGST--------T----TTSEEEEEEEEEEET-TEEEEEEE
T ss_pred CCCeEEEEEEEEEEecCC-E---EEEECCCCcEEEEEChhhcC--------CcccCCCCEEEEEEEEeCCC-CceEEEEE
Confidence 567899999987765443 4 45699999999999876442 23589999999999998554 35788887
Q ss_pred eEE
Q psy11418 169 KLT 171 (553)
Q Consensus 169 ~i~ 171 (553)
.|+
T Consensus 100 ~I~ 102 (103)
T PF04076_consen 100 RIE 102 (103)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 178
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=94.31 E-value=0.19 Score=60.50 Aligned_cols=81 Identities=19% Similarity=0.269 Sum_probs=65.4
Q ss_pred CCcEEEEEEEEEeeecC--CCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEe
Q psy11418 89 ENVTLSVAGRVHAIRES--GTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSII 166 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~--g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~ 166 (553)
.+..|+|+|.|..++.. +++++|+.|.|.+|.+.+++..+. |......|..|.++.|+|++.+. .|++.+.
T Consensus 952 ~~~~v~v~g~i~~~~~~~TkkGmaf~~leD~~g~~e~~ifp~~------~~~~~~~l~~~~~~~v~g~v~~~-~~~~~~~ 1024 (1046)
T PRK05672 952 DGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGMVNVVVWPGL------WERQRREALGARLLLVRGRVQNA-EGVRHLV 1024 (1046)
T ss_pred CCCEEEEEEEEEEEEEecCCCceEEEEEecCCCCEEEEECHHH------HHHHHHHhccCCEEEEEEEEEec-CCeEEEE
Confidence 46679999999998865 235999999999999999998753 44555679999999999999764 6678898
Q ss_pred eeeEEEeccC
Q psy11418 167 PKKLTLLSPC 176 (553)
Q Consensus 167 ~~~i~il~~~ 176 (553)
+.++.-+...
T Consensus 1025 ~~~i~~~~~~ 1034 (1046)
T PRK05672 1025 ADRLEDLSPL 1034 (1046)
T ss_pred EeeeechHHH
Confidence 9888766553
No 179
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=94.14 E-value=0.22 Score=60.58 Aligned_cols=78 Identities=6% Similarity=0.132 Sum_probs=62.6
Q ss_pred CCcEEEEEEEEEeeecC----CCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 89 ENVTLSVAGRVHAIRES----GTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~----g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
.+.+|+|+|.|.++|.. |+.++|+.|.|.+|.+.+++..+ .|......|..|.+|.|+|++.+ ..++..
T Consensus 999 ~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~~e~vvFp~------~y~~~~~~l~~~~~~~v~g~v~~-~~~~~~ 1071 (1170)
T PRK07374 999 DKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGSCEAVVFPK------SYERLSDHLMTDTRLLVWAKVDR-RDDRVQ 1071 (1170)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHH------HHHHHHHHhccCCEEEEEEEEEe-cCCeEE
Confidence 46789999999999743 44699999999999999999865 34455667999999999999975 346678
Q ss_pred EeeeeEEEe
Q psy11418 165 IIPKKLTLL 173 (553)
Q Consensus 165 l~~~~i~il 173 (553)
+.+.++.-+
T Consensus 1072 ~~~~~i~~l 1080 (1170)
T PRK07374 1072 LIIDDCREI 1080 (1170)
T ss_pred EEEeeeecH
Confidence 888777544
No 180
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=94.09 E-value=0.12 Score=56.61 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.6
Q ss_pred cEEEEccccccCCCCC---CccCCcceeeeEec
Q psy11418 281 RVYEVGRQFRNEGIDL---THNPEFTTCEFYMA 310 (553)
Q Consensus 281 rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a 310 (553)
-|-+||++||||=+-. -++.||+|+|+|.-
T Consensus 189 giaQIGKsfRNEISPr~gl~R~REF~QaEiE~F 221 (558)
T COG0423 189 GIAQIGKSFRNEISPRNGLFRTREFEQAEIEFF 221 (558)
T ss_pred EEEeechhhccccCcccceeehhhhhhhheeeE
Confidence 5899999999996644 38999999999973
No 181
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=94.07 E-value=0.21 Score=60.44 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=63.4
Q ss_pred CCcEEEEEEEEEeeec----CCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 89 ENVTLSVAGRVHAIRE----SGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~----~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
.+..|+|+|.|..+|. .|+.++|+.|.|.+|.+.+++..+ .|......|..|.+|.|+|++.. ..++..
T Consensus 942 ~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~~e~~vFp~------~y~~~~~~l~~~~~~~v~G~v~~-~~~~~~ 1014 (1107)
T PRK06920 942 KKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDEMEAVVFPE------TYIHFSDKLQEGAIVLVDGTIEL-RNHKLQ 1014 (1107)
T ss_pred CCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEEEe-cCCcEE
Confidence 3568999999999863 355799999999999999999865 34455667999999999999975 356678
Q ss_pred EeeeeEEEec
Q psy11418 165 IIPKKLTLLS 174 (553)
Q Consensus 165 l~~~~i~il~ 174 (553)
+.+.++.-+.
T Consensus 1015 ~~~~~i~~l~ 1024 (1107)
T PRK06920 1015 WIVNGLYPLE 1024 (1107)
T ss_pred EEEeecccHH
Confidence 8888876554
No 182
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=93.89 E-value=0.23 Score=60.34 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=64.7
Q ss_pred CCcEEEEEEEEEeeecC----CCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 89 ENVTLSVAGRVHAIRES----GTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~----g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
.+..|.++|.|.++|.. |+.++|+.|.|.+|.+.+++..+ .|......|..|++|.|+|++.. ..+++.
T Consensus 976 ~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG~iEvviFp~------~ye~~~~~L~~g~iV~V~GkVe~-~~~~~q 1048 (1135)
T PRK05673 976 GGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSGRIEVMLFSE------ALEKYRDLLEEDRIVVVKGQVSF-DDGGLR 1048 (1135)
T ss_pred cCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEEEe-cCCeEE
Confidence 36789999999999843 55699999999999999999864 34455667999999999999965 346788
Q ss_pred EeeeeEEEeccC
Q psy11418 165 IIPKKLTLLSPC 176 (553)
Q Consensus 165 l~~~~i~il~~~ 176 (553)
|.++++.-+...
T Consensus 1049 lii~~I~~L~~~ 1060 (1135)
T PRK05673 1049 LTAREVMDLEEA 1060 (1135)
T ss_pred EEEeecccHHHH
Confidence 888887666443
No 183
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=93.04 E-value=0.36 Score=46.85 Aligned_cols=109 Identities=23% Similarity=0.264 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhhCCeEEEecceeccc-cC----CCCCcceeeccCCC-CcceeeeeC--HHHHHHHH--HHccC--CcEE
Q psy11418 216 QIIAYVRRYLDSLGFLEVETPMMNMI-AG----GATAKPFVTHHNDL-NMDLYMRIA--PELYLKML--VVGGL--DRVY 283 (553)
Q Consensus 216 ~i~~~ir~fl~~~gF~EV~TPil~~~-~g----ga~a~~F~t~~~~~-~~~~~L~~S--pql~lk~l--~~~g~--~rVf 283 (553)
.+.+.+|++|...||.||-|..+.+. .- .....+... .|-. ..--+||.| |.|..-.. ...+. -|+|
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~~~~~~~~~i~l-~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~lF 82 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSPEEAELFDGGLDEAVEL-SNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLRLF 82 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCHHHHHhccCCCCCeEEE-cCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCEeEE
Confidence 44567899999999999999999643 10 000111211 1111 112235544 23222111 11121 2999
Q ss_pred EEccccccCCCCCCccCCcceeeeEecc-------------CCHHHHHHHHHHHHhcc
Q psy11418 284 EVGRQFRNEGIDLTHNPEFTTCEFYMAY-------------ADYNDLMHLTEDLISGR 328 (553)
Q Consensus 284 ei~~~FR~E~~~~~H~~EFt~lE~e~a~-------------~~~~~~m~~~e~li~~~ 328 (553)
|||+||..+.. +..|.+.+-+-.+. .|+.|+-..+|.++..+
T Consensus 83 EiG~vf~~~~~---~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l 137 (198)
T cd00769 83 EIGRVFLKDED---GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRAL 137 (198)
T ss_pred EeEeEEecCCC---CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHc
Confidence 99999976531 32455555444443 37888999999988766
No 184
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=92.82 E-value=0.45 Score=57.09 Aligned_cols=75 Identities=16% Similarity=0.336 Sum_probs=59.9
Q ss_pred CcEEEEEEEEEeee----c-CCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 90 NVTLSVAGRVHAIR----E-SGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 90 ~~~V~v~Gri~~~R----~-~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
+..+.+.|+|.++| + .|+.++|+.|.|.+|.+.+++..+ .|......|..|.+|.|+|++... .++..
T Consensus 884 ~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~ie~~vFp~------~y~~~~~~l~~~~~~~v~G~v~~~-~~~~~ 956 (1034)
T PRK07279 884 NSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKKLDVTLFPE------TYRQYKDELKEGKFYYLKGKIQER-DGRLQ 956 (1034)
T ss_pred CCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEEEec-CCeeE
Confidence 45688999998766 2 466799999999999999999865 344556679999999999999753 56777
Q ss_pred EeeeeEE
Q psy11418 165 IIPKKLT 171 (553)
Q Consensus 165 l~~~~i~ 171 (553)
+.+.++.
T Consensus 957 l~~~~i~ 963 (1034)
T PRK07279 957 MVLQQIQ 963 (1034)
T ss_pred EEEeeee
Confidence 8777775
No 185
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=92.59 E-value=0.51 Score=52.07 Aligned_cols=99 Identities=19% Similarity=0.190 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhh--hCCeEEEecceecc-----------------------------------cc-CCC----CCcc
Q psy11418 212 IVRAQIIAYVRRYLD--SLGFLEVETPMMNM-----------------------------------IA-GGA----TAKP 249 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~--~~gF~EV~TPil~~-----------------------------------~~-gga----~a~~ 249 (553)
.++..|++..|++|- ..+.+|++||||.+ || +|+ ..+|
T Consensus 41 ~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~aSGH~~~F~DpmV~CkkCk~ryRaD~LiikCP~CGs~dLTe~~~ 120 (539)
T PRK14894 41 ELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKYSGHEETFNDPLVDCRDCKMRWRADHIQGVCPNCGSRDLTEPRP 120 (539)
T ss_pred HHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeeeccCCCCCCCceeECCCCCccccCccceeeCCCCCCcCCCccee
Confidence 467788888888883 56788999999731 11 111 0112
Q ss_pred ----eeeccCCC---CcceeeeeC----HHHHHHHHHHccCC----cEEEEccccccCCCCC---CccCCcceeeeEec
Q psy11418 250 ----FVTHHNDL---NMDLYMRIA----PELYLKMLVVGGLD----RVYEVGRQFRNEGIDL---THNPEFTTCEFYMA 310 (553)
Q Consensus 250 ----F~t~~~~~---~~~~~L~~S----pql~lk~l~~~g~~----rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a 310 (553)
|.|..-.. +...|||.- -=+.-+.++-..-. -+-+||++||||=+-. -+.-||+|+|+|.-
T Consensus 121 FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEIsPr~~l~R~REF~q~EiE~F 199 (539)
T PRK14894 121 FNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEINPRNFLFRVREFEQMEIEYF 199 (539)
T ss_pred ccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCccCCCCceeecccchhheEEEE
Confidence 33322111 246899932 22233343322111 6899999999994433 27889999999984
No 186
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=92.58 E-value=0.91 Score=41.06 Aligned_cols=70 Identities=14% Similarity=0.311 Sum_probs=52.3
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeee
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPK 168 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~ 168 (553)
.+..|++.|.|.+.-..- . +..+|++|.|.|-++.+... -..++++|-|.|.|.+-+.- +..+|.|.
T Consensus 56 Ddt~V~L~G~Iv~~l~~d-~---Y~F~D~TG~I~VeId~~~w~--------G~~v~p~d~V~I~GeVDk~~-~~~~IdV~ 122 (126)
T TIGR00156 56 DGASVTLRGNIISHIGDD-R---YVFRDKSGEINVVIPAAVWN--------GREVQPKDMVNISGSLDKKS-APAEVDVT 122 (126)
T ss_pred CCCEEEEEEEEEEEeCCc-e---EEEECCCCCEEEEECHHHcC--------CCcCCCCCEEEEEEEECCCC-CCeEEEEE
Confidence 567899999998776544 3 55699999999998765321 23589999999999998643 34677777
Q ss_pred eEE
Q psy11418 169 KLT 171 (553)
Q Consensus 169 ~i~ 171 (553)
.|+
T Consensus 123 ~I~ 125 (126)
T TIGR00156 123 HIQ 125 (126)
T ss_pred EEE
Confidence 664
No 187
>COG3111 Periplasmic protein with OB-fold [Function unknown]
Probab=92.52 E-value=0.77 Score=41.03 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=53.6
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeee
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPK 168 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~ 168 (553)
.+..|++.|-|.+.-..- - +..||++|.|+|-++.+... -..+++.|-|.+.|.+-+. -...+|.|+
T Consensus 56 Dda~V~l~GnIv~qi~~D-~---y~FrD~sGeI~VeIdd~~w~--------g~tv~P~dkV~I~GevDk~-~~~~eIdV~ 122 (128)
T COG3111 56 DDAWVSLEGNIVRQIGDD-R---YVFRDASGEINVDIDDKVWN--------GQTVTPKDKVRIQGEVDKD-WNSVEIDVK 122 (128)
T ss_pred cCCeEEEEeeEEEeeCCc-e---EEEEcCCccEEEEecccccC--------CcccCcccEEEEEeEEcCC-CccceeEhh
Confidence 456899999987654333 2 45699999999999876542 2358999999999999875 335677777
Q ss_pred eEEEe
Q psy11418 169 KLTLL 173 (553)
Q Consensus 169 ~i~il 173 (553)
.|+.+
T Consensus 123 ~I~k~ 127 (128)
T COG3111 123 HIEKL 127 (128)
T ss_pred heEec
Confidence 77654
No 188
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=92.29 E-value=1 Score=35.44 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=45.6
Q ss_pred EEEEEEeeecC---CCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeE
Q psy11418 95 VAGRVHAIRES---GTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKL 170 (553)
Q Consensus 95 v~Gri~~~R~~---g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i 170 (553)
+.|.|.+.... |++..-+.+.|+++.+.+++-... .+ ..+.+..|+.+.|.|++... .|.+++.--++
T Consensus 2 i~~~V~~~~~~~~~~~~~~~~~~~D~~g~i~~~~F~~~-----~~--~~~~~~~G~~~~v~Gkv~~~-~~~~qi~~P~~ 72 (75)
T cd04488 2 VEGTVVSVEVVPRRGRRRLKVTLSDGTGTLTLVFFNFQ-----PY--LKKQLPPGTRVRVSGKVKRF-RGGLQIVHPEY 72 (75)
T ss_pred EEEEEEEEEeccCCCccEEEEEEEcCCCEEEEEEECCC-----HH--HHhcCCCCCEEEEEEEEeec-CCeeEEeCCcE
Confidence 55666654321 336777888999999999887521 12 24679999999999999754 35555544333
No 189
>PRK10053 hypothetical protein; Provisional
Probab=92.23 E-value=0.88 Score=41.39 Aligned_cols=70 Identities=19% Similarity=0.325 Sum_probs=52.4
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeee
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPK 168 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~ 168 (553)
.+..|++.|.|.+.=..- + +..+|++|.|+|-++.+... -..+++.|-|.+.|.+-+.-+ ..+|.|+
T Consensus 60 Dd~~V~L~G~Iv~~lg~d-~---Y~F~D~tG~I~VeID~~~w~--------G~~v~p~~kV~I~GevDk~~~-~~~IdV~ 126 (130)
T PRK10053 60 DGATVSLRGNLIDHKGDD-R---YVFRDKSGEINVIIPAAVFD--------GREVQPDQMININGSLDKKSA-PPVVRVT 126 (130)
T ss_pred CCCeEEEEEEEEEEeCCc-e---EEEECCCCcEEEEeCHHHcC--------CCcCCCCCEEEEEEEECCCCC-CeEEEEE
Confidence 567899999997654333 3 45699999999998865431 236899999999999987633 4677777
Q ss_pred eEE
Q psy11418 169 KLT 171 (553)
Q Consensus 169 ~i~ 171 (553)
.|+
T Consensus 127 ~i~ 129 (130)
T PRK10053 127 HLQ 129 (130)
T ss_pred EEe
Confidence 764
No 190
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=92.01 E-value=1.7 Score=50.43 Aligned_cols=96 Identities=11% Similarity=0.160 Sum_probs=62.8
Q ss_pred CCCCCccccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecC--CCceEEEEEEeCCEEEEEEEecccCCCHHHHHH
Q psy11418 61 PYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRES--GTKLMFYDLRGEGLKIQVMANARMYQSEEEFAS 138 (553)
Q Consensus 61 pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~--g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~ 138 (553)
-||.++.....+..+. +...|+.|+|.|.|.+.+.. |+++.-+.+.|++|.+++++-.-. ..|
T Consensus 39 ~~P~~y~d~~~~~~i~---------~l~~g~~vtv~g~V~~~~~~~~~~~~~~v~l~D~tg~i~l~~F~~n----~~~-- 103 (681)
T PRK10917 39 HLPRRYEDRTRLKPIA---------ELRPGEKVTVEGEVLSAEVVFGKRRRLTVTVSDGTGNLTLRFFNFN----QPY-- 103 (681)
T ss_pred cCCCceEEcCCcCCHH---------HCCCCCEEEEEEEEEEEEEccCCceEEEEEEEECCeEEEEEEEccC----cHH--
Confidence 5787775543222221 12356789999999887533 446778889999999999887311 123
Q ss_pred HhccCCCCcEEEEEeecccccCCceeEeeeeEEE
Q psy11418 139 DLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTL 172 (553)
Q Consensus 139 ~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~i 172 (553)
..+.+..|+.+.|.|++.. ..|.+++.--++.+
T Consensus 104 ~~~~l~~G~~~~v~Gkv~~-~~~~~qm~~P~~~~ 136 (681)
T PRK10917 104 LKKQLKVGKRVAVYGKVKR-GKYGLEMVHPEYEV 136 (681)
T ss_pred HHhhCCCCCEEEEEEEEEe-cCCeEEEEcCEEEe
Confidence 2467999999999999975 33445554444433
No 191
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=91.90 E-value=0.21 Score=47.95 Aligned_cols=62 Identities=31% Similarity=0.423 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhCCcEEeeCceeeccC--CCccee--eeeecCCCCCcceeEEeChhHHHHHhc
Q psy11418 428 RAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAK--PFVTHHNDLNMDLYMRIAPELYLKSTH 489 (553)
Q Consensus 428 Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~--~~~t~~~~~~~~~yL~~Spel~~k~l~ 489 (553)
|+.+.+.+|++|...||.||.||+|+... ...... ......+..+...+|+.|....+.++.
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~ 67 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLF 67 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHH
Confidence 67899999999999999999999998874 211100 111112244678899999999998764
No 192
>KOG1035|consensus
Probab=91.25 E-value=0.57 Score=56.14 Aligned_cols=119 Identities=17% Similarity=0.199 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceecc---cc-CCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHcc---CCcEE
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNM---IA-GGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG---LDRVY 283 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~---~~-gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g---~~rVf 283 (553)
-.+|+.+...+-+.|+++|++|++||-+.. ++ +..++-.+.+ --|..+-|...--+..-+.++.. .-|-|
T Consensus 932 ~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~~~~~~~~v~~ld---~sG~~v~Lp~DLr~pfar~vs~N~~~~~Kry 1008 (1351)
T KOG1035|consen 932 NELREYVVEEVVKIFRKHGAIELETPPLSLRNACAYFSRKAVELLD---HSGDVVELPYDLRLPFARYVSRNSVLSFKRY 1008 (1351)
T ss_pred HHHHHHHHHHHHHHHHHhcceeccCCccccccccchhccceeeeec---CCCCEEEeeccccchHHHHhhhchHHHHHHh
Confidence 356788888888999999999999997752 11 2222222222 23444444433333344433321 23779
Q ss_pred EEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCC
Q psy11418 284 EVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNR 334 (553)
Q Consensus 284 ei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~ 334 (553)
+|++|||-+. +. |-.|++.|+|.+...+ -.|++.++-+++..++.+.+-
T Consensus 1009 ~i~rVyr~~~-~~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l~~~n~ 1061 (1351)
T KOG1035|consen 1009 CISRVYRPAI-HN-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTEILHEGNC 1061 (1351)
T ss_pred hhheeecccc-cC-CCccccceeeeEecCCCCccHHHHHHHHHHHHHHHhccCce
Confidence 9999999998 43 9999999999987663 678888888888887655543
No 193
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC). Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=91.03 E-value=2.8 Score=34.91 Aligned_cols=73 Identities=25% Similarity=0.388 Sum_probs=50.6
Q ss_pred EEEEEEEEeee----cCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCC-CCcEEEEEeeccccc-CCceeEe
Q psy11418 93 LSVAGRVHAIR----ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIK-RGDIIGVTGSPGKTK-KGELSII 166 (553)
Q Consensus 93 V~v~Gri~~~R----~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~-~gd~V~v~G~~~~t~-~ge~~l~ 166 (553)
|+|.|-|-.+- +.|+.+.-+.|.|.+..+-|..-.+. ..+ ....|. .|++|.|+|.+.-.+ .+++.+.
T Consensus 2 v~i~G~Vf~~e~re~k~g~~i~~~~itD~t~Si~~K~F~~~--~~~----~~~~ik~~G~~v~v~G~v~~D~f~~e~~~~ 75 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGRKILTFKVTDYTSSITVKKFLRK--DEK----DKEELKSKGDWVRVRGKVQYDTFSKELVLM 75 (82)
T ss_pred EEEEEEEEEEEEEEecCCCEEEEEEEEcCCCCEEEEEeccC--Chh----HHhhcccCCCEEEEEEEEEEccCCCceEEE
Confidence 67889887663 35545666899998876666544321 122 235688 999999999986544 6788888
Q ss_pred eeeEE
Q psy11418 167 PKKLT 171 (553)
Q Consensus 167 ~~~i~ 171 (553)
+..+.
T Consensus 76 i~~i~ 80 (82)
T cd04484 76 INDIE 80 (82)
T ss_pred eeeEE
Confidence 77654
No 194
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=90.10 E-value=0.45 Score=52.71 Aligned_cols=78 Identities=23% Similarity=0.321 Sum_probs=58.5
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEee
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIP 167 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~ 167 (553)
..|++|.|.|-|..++.-+ +-.-+.|+|+++.+++-.-... |. ...-.+.+||+|.|+|.+.. ..|.+-|.+
T Consensus 211 ~ig~tV~I~GeV~qikqT~-GPTVFtltDetg~i~aAAFe~a--Gv----RAyP~IevGdiV~ViG~V~~-r~g~lQiE~ 282 (715)
T COG1107 211 MIGKTVRIEGEVTQIKQTS-GPTVFTLTDETGAIWAAAFEEA--GV----RAYPEIEVGDIVEVIGEVTR-RDGRLQIEI 282 (715)
T ss_pred hcCceEEEEEEEEEEEEcC-CCEEEEEecCCCceehhhhccC--Cc----ccCCCCCCCceEEEEEEEee-cCCcEEEee
Confidence 4688999999999999888 6677899999999988654322 11 12346999999999999863 455566666
Q ss_pred eeEEEe
Q psy11418 168 KKLTLL 173 (553)
Q Consensus 168 ~~i~il 173 (553)
.+++.|
T Consensus 283 ~~me~L 288 (715)
T COG1107 283 EAMEKL 288 (715)
T ss_pred hhhHHh
Confidence 666554
No 195
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct
Probab=89.72 E-value=1.2 Score=38.80 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=43.9
Q ss_pred EEEEEEEEEe---ee---c---CCCceEEEEEEeC-CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecc
Q psy11418 92 TLSVAGRVHA---IR---E---SGTKLMFYDLRGE-GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPG 156 (553)
Q Consensus 92 ~V~v~Gri~~---~R---~---~g~kl~Fi~l~d~-~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~ 156 (553)
.++|.|||.+ +| . .| ++.-++|.|. ++.|++.+..+.. + .+...|..|+++.+.|--+
T Consensus 11 ~~~I~~rV~~k~~~~~f~~~~~~g-~~~~~~l~De~~~~I~~t~~~~~~---~---~f~~~l~eG~vy~i~~~~V 78 (104)
T cd04474 11 KWTIKARVTNKSDIRTWSNARGEG-KLFSFDLLDEDGGEIRATFFNDAV---D---KFYDLLEVGKVYYISKGSV 78 (104)
T ss_pred cEEEEEEEeeccccccccCCCCCc-EEEEEEEEECCCCEEEEEEehHHH---H---HhhcccccccEEEEeccEE
Confidence 4899999985 33 2 25 7888999999 8899999987542 2 3456799999999986433
No 196
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=89.54 E-value=1.4 Score=48.12 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=62.6
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc-ccCCceeEeeee
Q psy11418 91 VTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK-TKKGELSIIPKK 169 (553)
Q Consensus 91 ~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~-t~~ge~~l~~~~ 169 (553)
..|+|.|=|.+.+.++++=+|+.|.|....|-|++.+.... ...-.+..|+-|.|.|.+.- .+.|.+.|.+.+
T Consensus 24 ~~v~v~gEis~~~~~~sGH~Yf~Lkd~~a~i~~~~~~~~~~------~~~~~~~~G~~v~v~g~~~~y~~~g~~ql~v~~ 97 (438)
T PRK00286 24 GQVWVRGEISNFTRHSSGHWYFTLKDEIAQIRCVMFKGSAR------RLKFKPEEGMKVLVRGKVSLYEPRGDYQLIVEE 97 (438)
T ss_pred CcEEEEEEeCCCeeCCCCeEEEEEEcCCcEEEEEEEcChhh------cCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEE
Confidence 46999999999987644678999999999999999886431 12235899999999999874 568889999999
Q ss_pred EEEec
Q psy11418 170 LTLLS 174 (553)
Q Consensus 170 i~il~ 174 (553)
+...+
T Consensus 98 i~~~g 102 (438)
T PRK00286 98 IEPAG 102 (438)
T ss_pred eeeCC
Confidence 87643
No 197
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=88.97 E-value=0.87 Score=41.58 Aligned_cols=85 Identities=18% Similarity=0.230 Sum_probs=46.6
Q ss_pred cCCHHHHHHHhCC--CCcccccCCcEEEEEEEEEeeecCCCceEEEEEEeCC--EEEEEEEecccCCCHHHHHHHhccCC
Q psy11418 69 TSSLEDFIEKYSD--LPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEG--LKIQVMANARMYQSEEEFASDLVKIK 144 (553)
Q Consensus 69 ~~~~~~~~~~~~~--~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~--~~iQvv~~~~~~~~~~~~~~~~~~l~ 144 (553)
..+..++.+.|.+ ........|+.|.|.|.|..+.....+-.++...+.. ..+++.+..+.. .. .....|.
T Consensus 44 ~~sa~~L~~~y~~N~~~A~~kY~gK~i~vtG~V~~I~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~-~~~~~l~ 118 (144)
T PF12869_consen 44 SVSAEELYKDYKDNEVAADKKYKGKIIEVTGTVSSIDKGFGDNYVVLLGTENGFAGVQCYFSNDQE----KR-ASVAKLK 118 (144)
T ss_dssp EEEHHHHHHHHHH-HHHHHHHHTT-EEEEEEEEEEEEE-STT-EEEEEE-TT-S-S--EEEEEEGG----GH-HHHHH--
T ss_pred eecHHHHHHHHHhCHHHHHhhcCCCEEEEEEEEEEEEEcCCCcEEEEccCCCCceeEEEEEccchh----hh-hhHhcCC
Confidence 3455677777732 1122334688999999999998633244555555533 478888877631 11 1234599
Q ss_pred CCcEEEEEeecccc
Q psy11418 145 RGDIIGVTGSPGKT 158 (553)
Q Consensus 145 ~gd~V~v~G~~~~t 158 (553)
.||.|.|+|...-.
T Consensus 119 ~G~~Vti~G~~~g~ 132 (144)
T PF12869_consen 119 KGQKVTIKGICTGY 132 (144)
T ss_dssp TTSEEEEEEE----
T ss_pred CCCEEEEEEEEEee
Confidence 99999999998644
No 198
>PRK15491 replication factor A; Provisional
Probab=88.76 E-value=2.2 Score=45.78 Aligned_cols=82 Identities=13% Similarity=0.157 Sum_probs=60.1
Q ss_pred cEEEEEEEEEee-------ecCC--CceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCC
Q psy11418 91 VTLSVAGRVHAI-------RESG--TKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKG 161 (553)
Q Consensus 91 ~~V~v~Gri~~~-------R~~g--~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~g 161 (553)
..|+|.|||.++ |..| .++.=+.|-|.+|.+++++-.+.. +.|. ...|..|+++.|.|.+.+.-.|
T Consensus 68 ~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG~ir~tlW~~~a---~~~~--~~~le~G~v~~I~~~~~~~y~g 142 (374)
T PRK15491 68 SNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETGSIRLTLWDDLA---DLIK--TGDIEVGKSLNISGYAKEGYSG 142 (374)
T ss_pred CceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCCeEEEEEECchh---hhhc--cCCcCCCCEEEEeeeeccCccc
Confidence 469999999987 3334 267668999999999999988642 1111 1358999999999985544444
Q ss_pred ceeEeeeeEEEeccCCC
Q psy11418 162 ELSIIPKKLTLLSPCLH 178 (553)
Q Consensus 162 e~~l~~~~i~il~~~~~ 178 (553)
++|.+..-..+.+|..
T Consensus 143 -~Ei~i~~~~~i~~~~~ 158 (374)
T PRK15491 143 -IEVNIGRYGGISESDE 158 (374)
T ss_pred -EEEEeCCCceeeeccc
Confidence 8888887777777754
No 199
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=88.38 E-value=4.5 Score=35.03 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=47.2
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCC-EEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEee
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEG-LKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIP 167 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~-~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~ 167 (553)
.|+.|++-|+|.+.+... +.+.+.. +.++|.++... .+..+-+|.|.|++.. ..+|.+
T Consensus 14 ~gk~V~ivGkV~~~~~~~-----~~~~~~Dg~~v~v~l~~~~------------~~~~~~~vEViG~V~~----~~~I~~ 72 (101)
T cd04479 14 VGKTVRIVGKVEKVDGDS-----LTLISSDGVNVTVELNRPL------------DLPISGYVEVIGKVSP----DLTIRV 72 (101)
T ss_pred CCCEEEEEEEEEEecCCe-----EEEEcCCCCEEEEEeCCCC------------CcccCCEEEEEEEECC----CCeEEE
Confidence 568999999999997543 4445443 58999987642 3577789999999973 366777
Q ss_pred eeEEEec
Q psy11418 168 KKLTLLS 174 (553)
Q Consensus 168 ~~i~il~ 174 (553)
..+.-++
T Consensus 73 ~~~~~~g 79 (101)
T cd04479 73 LSYIDFG 79 (101)
T ss_pred EEEEECC
Confidence 7765554
No 200
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=88.33 E-value=5.6 Score=41.69 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=50.2
Q ss_pred cCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccC
Q psy11418 104 ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPC 176 (553)
Q Consensus 104 ~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~ 176 (553)
+.|+.-..+.|.|.+|.|.+.+.... ++ ....+..|++|.|.|.+.. =+|.+.+.+..+..+.+.
T Consensus 29 knG~~yl~l~l~D~tG~I~ak~W~~~---~~----~~~~~~~g~vv~v~G~v~~-y~g~~Ql~i~~i~~~~~~ 93 (314)
T PRK13480 29 SNGKPFLTLILQDKSGDIEAKLWDVS---PE----DEATYVPETIVHVKGDIIN-YRGRKQLKVNQIRLATEE 93 (314)
T ss_pred CCCCeEEEEEEEcCCcEEEEEeCCCC---hh----hHhhcCCCCEEEEEEEEEE-ECCcceEEEEEeEECCCC
Confidence 44545667888899999999997653 22 2456899999999999974 467788889999988764
No 201
>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]
Probab=88.30 E-value=2.8 Score=40.83 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=55.4
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEE
Q psy11418 92 TLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLT 171 (553)
Q Consensus 92 ~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~ 171 (553)
.|++.|||+++..+- .-+|+.|.||+|.|-|-...... .-.+..+.+.-|-.|.|.|.+. +=.|...|.+.-|.
T Consensus 68 ~V~fVGvvrni~~~t-tn~~~~iEDGTG~Ievr~W~~~~----~~~e~~~d~~~~~yvkV~G~lk-~F~GK~~I~~~~i~ 141 (258)
T COG5235 68 NVQFVGVVRNIKTST-TNSMFVIEDGTGSIEVRFWPGNS----YEEEQCKDLEEQNYVKVNGSLK-TFNGKRSISASHIS 141 (258)
T ss_pred eEEEEEEEEeeeecc-cceEEEEecCCceEEEEecCCCc----hHHHhccccccccEEEEeccee-eeCCeeEEehhhee
Confidence 589999999999997 56789999999999998877542 1123456677888999999864 34566666665443
No 202
>PRK14699 replication factor A; Provisional
Probab=87.59 E-value=2.7 Score=46.62 Aligned_cols=83 Identities=18% Similarity=0.196 Sum_probs=58.9
Q ss_pred CcEEEEEEEEEee-------ecCC--CceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhc--cCCCCcEEEEEeecccc
Q psy11418 90 NVTLSVAGRVHAI-------RESG--TKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLV--KIKRGDIIGVTGSPGKT 158 (553)
Q Consensus 90 ~~~V~v~Gri~~~-------R~~g--~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~--~l~~gd~V~v~G~~~~t 158 (553)
+..|++.|||.++ |..| .+++=+.|-|.+|+|.+++-.+.. ..+. .|..||+|.|.|.+ +.
T Consensus 67 ~~~v~i~~rVl~i~~~r~f~r~dG~~g~v~~~~iaDeTG~ir~tlW~~~a-------~~~~~g~l~~GDvv~I~~~~-r~ 138 (484)
T PRK14699 67 SGPVNFIARVVSVFDTKEFTRNDGTIGRVGNLIVGDETGKIKLTLWDNMA-------DLIKAGKIKAGQTLQISGYA-KQ 138 (484)
T ss_pred CceEEEEEEEEEecCceEEecCCCCceEEEEEEEecCCCeEEEEEecCcc-------chhhhcCCCCCCEEEEccee-cc
Confidence 3579999999998 3345 256666889999999999987642 1222 59999999999974 34
Q ss_pred cCCceeEeeeeEEEeccCCCCC
Q psy11418 159 KKGELSIIPKKLTLLSPCLHML 180 (553)
Q Consensus 159 ~~ge~~l~~~~i~il~~~~~~l 180 (553)
..+.++|.+.....+.++...+
T Consensus 139 ~~~g~el~~~~~~~i~~~~~~i 160 (484)
T PRK14699 139 GYSGVEVNIGNNGVLTESEEEI 160 (484)
T ss_pred CCCCceEEeCCCceeeccCccc
Confidence 3445788887666666644333
No 203
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=87.42 E-value=1.9 Score=46.90 Aligned_cols=75 Identities=13% Similarity=0.251 Sum_probs=61.0
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc-ccCCceeEeeeeE
Q psy11418 92 TLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK-TKKGELSIIPKKL 170 (553)
Q Consensus 92 ~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~-t~~ge~~l~~~~i 170 (553)
.|+|.|-|.+++...++-.|+.|.|+...|+|++.+.... ...-.+.-|+-|.|+|.+.- .+.|.+.|.++++
T Consensus 25 ~V~v~GEISn~t~~~sgH~YFtLKD~~A~i~c~mf~~~~~------~l~f~p~eG~~V~v~G~is~Y~~rG~YQi~~~~~ 98 (440)
T COG1570 25 QVWVRGEISNFTRPASGHLYFTLKDERAQIRCVMFKGNNR------RLKFRPEEGMQVLVRGKISLYEPRGDYQIVAESM 98 (440)
T ss_pred eEEEEEEecCCccCCCccEEEEEccCCceEEEEEEcCccc------ccCCCccCCCEEEEEEEEEEEcCCCceEEEEecC
Confidence 5999999999997765678999999999999999886431 12234899999999999875 4689999988877
Q ss_pred EE
Q psy11418 171 TL 172 (553)
Q Consensus 171 ~i 172 (553)
+-
T Consensus 99 ~p 100 (440)
T COG1570 99 EP 100 (440)
T ss_pred Cc
Confidence 64
No 204
>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=87.10 E-value=2.2 Score=41.14 Aligned_cols=75 Identities=24% Similarity=0.207 Sum_probs=53.3
Q ss_pred CCcEEEEEEEEEeee-cCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHh---ccCCCCcEEEEEeecccccCCcee
Q psy11418 89 ENVTLSVAGRVHAIR-ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDL---VKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R-~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~---~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
..+.|+|.|-|.+.+ ..|.++.++.|.|++|+|-+++..+. +.+.... --+..|++|.|+|.+..- +|..+
T Consensus 50 l~e~v~vkg~V~~~~n~~~~gi~~l~lndgtGti~vva~~~t----ee~l~~n~~~p~~~eGe~veVtGrv~~y-rG~~e 124 (204)
T COG4085 50 LNEEVTVKGEVTADQNAIGGGIESLVLNDGTGTITVVASRST----EETLELNEGMPVTVEGEIVEVTGRVEEY-RGSSE 124 (204)
T ss_pred eeccceeeeEEEeeecccccceEEEEEECCCCcEEEEEecCh----hHhHhhcCCCCccccCcEEEEEEEEEEe-CCCce
Confidence 345688999999998 55668999999999999998887753 2222211 135689999999987532 34445
Q ss_pred Eeee
Q psy11418 165 IIPK 168 (553)
Q Consensus 165 l~~~ 168 (553)
|.+.
T Consensus 125 Vkvn 128 (204)
T COG4085 125 VKVN 128 (204)
T ss_pred eecc
Confidence 5443
No 205
>KOG2509|consensus
Probab=86.89 E-value=2.5 Score=45.58 Aligned_cols=118 Identities=19% Similarity=0.261 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc----cCCCCCcceee---ccCCCCcceeeeeCHHHHHHHHHHcc-C--
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI----AGGATAKPFVT---HHNDLNMDLYMRIAPELYLKMLVVGG-L-- 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~----~gga~a~~F~t---~~~~~~~~~~L~~Spql~lk~l~~~g-~-- 279 (553)
...+-.++++..-+|+.++||+-+.||.|... .+|-..+ |.- +.-.-+.+.||--..|..+-.+-.+- |
T Consensus 184 ~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~-~d~~~~y~ld~~~~~~LiaTaE~plAa~~~~e~~~~ 262 (455)
T KOG2509|consen 184 GAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKCGQLPR-FDEEQYYVLDGGDEKYLIATAEQPLAAYHRDEWLEE 262 (455)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHhccCcC-CCcceEEeecCCccceeEeeccchhhhhhccccccc
Confidence 44677788999999999999999999999531 2332111 210 00011234677766666665442211 0
Q ss_pred ----CcEEEEccccccCCC----CCC---ccCCcceeeeEe------ccCCHHHHHHHHHHHHhcc
Q psy11418 280 ----DRVYEVGRQFRNEGI----DLT---HNPEFTTCEFYM------AYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 280 ----~rVfei~~~FR~E~~----~~~---H~~EFt~lE~e~------a~~~~~~~m~~~e~li~~~ 328 (553)
-|+--.+.|||.|-. |++ +.-+|+-+|.-. ++.-+++|+...|++++.+
T Consensus 263 ~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~S~~~~eEmi~~~eef~qsL 328 (455)
T KOG2509|consen 263 DQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPEDSWEMLEEMINNQEEFYQSL 328 (455)
T ss_pred ccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCcchhHHHHHHHHHHHHHHHHHh
Confidence 155567999999963 343 445788888653 2223888888888888877
No 206
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=85.60 E-value=3.1 Score=45.50 Aligned_cols=75 Identities=12% Similarity=0.217 Sum_probs=60.4
Q ss_pred EEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc-ccCCceeEeeeeE
Q psy11418 92 TLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK-TKKGELSIIPKKL 170 (553)
Q Consensus 92 ~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~-t~~ge~~l~~~~i 170 (553)
.|+|.|-|.+.+.+.++=+|+.|.|....|.||+.+.... ...-.+.-|+-|.|.|.+.- .+.|.+.|.+.++
T Consensus 19 ~v~V~GEisn~~~~~sGH~YFtLkD~~a~i~~vmf~~~~~------~l~f~~~~G~~V~v~g~v~~y~~~G~~ql~v~~i 92 (432)
T TIGR00237 19 QVWIQGEISNFTQPVSGHWYFTLKDENAQVRCVMFRGNNN------RLKFRPQNGQQVLVRGGISVYEPRGDYQIICFEM 92 (432)
T ss_pred cEEEEEEecCCeeCCCceEEEEEEcCCcEEEEEEEcChhh------CCCCCCCCCCEEEEEEEEEEECCCCcEEEEEEEe
Confidence 5999999999986654568999999999999999876421 11224799999999999864 5688899999988
Q ss_pred EE
Q psy11418 171 TL 172 (553)
Q Consensus 171 ~i 172 (553)
..
T Consensus 93 ~~ 94 (432)
T TIGR00237 93 QP 94 (432)
T ss_pred cc
Confidence 75
No 207
>PRK06461 single-stranded DNA-binding protein; Reviewed
Probab=85.18 E-value=7.5 Score=35.22 Aligned_cols=75 Identities=12% Similarity=0.164 Sum_probs=53.2
Q ss_pred cEEEEEEEEEeee-------cCC-CceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCc
Q psy11418 91 VTLSVAGRVHAIR-------ESG-TKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGE 162 (553)
Q Consensus 91 ~~V~v~Gri~~~R-------~~g-~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge 162 (553)
..|.+.|.|.++- +.| ..+.-+.|.|.+|.|.+.+..+. ...+..||+|.|.|-....-.|.
T Consensus 15 ~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG~I~~tlW~~~----------a~~l~~GdvV~I~na~v~~f~G~ 84 (129)
T PRK06461 15 ERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETGRVKLTLWGEQ----------AGSLKEGEVVEIENAWTTLYRGK 84 (129)
T ss_pred CceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCCEEEEEEeCCc----------cccCCCCCEEEEECcEEeeeCCE
Confidence 3588888888432 222 23666888999999999987753 12478999999995544455788
Q ss_pred eeEeeee---EEEecc
Q psy11418 163 LSIIPKK---LTLLSP 175 (553)
Q Consensus 163 ~~l~~~~---i~il~~ 175 (553)
++|.+.. +..+..
T Consensus 85 lqL~i~~~~~i~~~~~ 100 (129)
T PRK06461 85 VQLNVGKYGSISESDD 100 (129)
T ss_pred EEEEECCCEEEEECCc
Confidence 8998884 565554
No 208
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating
Probab=84.43 E-value=6.4 Score=32.31 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=40.1
Q ss_pred ceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE-eecccccCCceeEeeeeE
Q psy11418 108 KLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT-GSPGKTKKGELSIIPKKL 170 (553)
Q Consensus 108 kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~-G~~~~t~~ge~~l~~~~i 170 (553)
++.=+.|.|++|.|.+++-... . ...+..||+|.+. |.+ +.-.|.++|.+.+.
T Consensus 23 ~~~~~~l~D~TG~i~~~~W~~~----~-----~~~~~~G~vv~i~~~~v-~~~~g~~ql~i~~~ 76 (82)
T cd04491 23 KVQSGLVGDETGTIRFTLWDEK----A-----ADDLEPGDVVRIENAYV-REFNGRLELSVGKN 76 (82)
T ss_pred EEEEEEEECCCCEEEEEEECch----h-----cccCCCCCEEEEEeEEE-EecCCcEEEEeCCc
Confidence 6777888899999999988652 1 3468999999999 555 34457788877654
No 209
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=84.03 E-value=4.1 Score=46.01 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhhhCCeEEEecceeccccCC--C---CCcceeeccCCCCcc-eeeeeCHHHHHHHHHHccCC-----cE
Q psy11418 214 RAQIIAYVRRYLDSLGFLEVETPMMNMIAGG--A---TAKPFVTHHNDLNMD-LYMRIAPELYLKMLVVGGLD-----RV 282 (553)
Q Consensus 214 rs~i~~~ir~fl~~~gF~EV~TPil~~~~gg--a---~a~~F~t~~~~~~~~-~~L~~Spql~lk~l~~~g~~-----rV 282 (553)
.....+.+|++|...||.|+-|-.+++...- . ....+..-.|-...+ -+||.|.=--|=..+..... |+
T Consensus 364 ~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~~~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~~~~~~~~l 443 (551)
T TIGR00471 364 LNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIEDNNDVKVANPKTLEYTIVRTSLLPGLLETLSENKHHELPQKI 443 (551)
T ss_pred HHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhccCCCCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcccCCCCeeE
Confidence 3455678899999999999999999653110 0 000111112222222 35776632222112222221 79
Q ss_pred EEEccccccCCCCCCccCCcceeeeEecc--CCHHHHHHHHHHHHhcc
Q psy11418 283 YEVGRQFRNEGIDLTHNPEFTTCEFYMAY--ADYNDLMHLTEDLISGR 328 (553)
Q Consensus 283 fei~~~FR~E~~~~~H~~EFt~lE~e~a~--~~~~~~m~~~e~li~~~ 328 (553)
||||++|...+.+..+..+|.++-+-.+. .|+.|+...+|.++..+
T Consensus 444 FEiG~Vf~~~~~~~~~e~~~~~l~~~~~g~~~df~d~Kg~ve~ll~~l 491 (551)
T TIGR00471 444 FEIGDVVVKDDKSETRSRVVTKLAVGITHSEANFNEIKSIVAALAREL 491 (551)
T ss_pred EEEEEEEEcCCccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 99999996532211244455777776664 48999999999999766
No 210
>PRK12366 replication factor A; Reviewed
Probab=83.04 E-value=4.9 Score=46.27 Aligned_cols=77 Identities=13% Similarity=0.189 Sum_probs=56.2
Q ss_pred CCcEEEEEEEEEeee---------cCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc--
Q psy11418 89 ENVTLSVAGRVHAIR---------ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK-- 157 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R---------~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~-- 157 (553)
.|..++|.|||.++- ..| ++.=++|.|++|.|.+++-.+.. +.| ..|..||++.+.|-..+
T Consensus 290 ~g~~~~I~grV~~~~~~R~f~~~~g~g-kv~s~~l~D~tG~IR~t~w~~~~---d~~----~~l~~G~vy~is~~~vk~y 361 (637)
T PRK12366 290 DGEEVDVKGRIIAISDKREVERDDRTA-EVQDIELADGTGRVRVSFWGEKA---KIL----ENLKEGDAVKIENCKVRTY 361 (637)
T ss_pred CCCEEEEEEEEEecCCceEEEcCCCcE-EEEEEEEEcCCCeEEEEEeCchh---hhh----cccCCCCEEEEecCEEeec
Confidence 345799999999873 235 78889999999999999987643 222 34679999999975555
Q ss_pred ---ccCCceeEeeeeEEEe
Q psy11418 158 ---TKKGELSIIPKKLTLL 173 (553)
Q Consensus 158 ---t~~ge~~l~~~~i~il 173 (553)
...++++|.+..-..+
T Consensus 362 ~~~~~~~~~El~~~~~s~I 380 (637)
T PRK12366 362 YDNEGEKRVDLNAGYSSEI 380 (637)
T ss_pred cccCCCcCEEEEcCCceEE
Confidence 4456788877554433
No 211
>PRK07459 single-stranded DNA-binding protein; Provisional
Probab=82.70 E-value=13 Score=33.22 Aligned_cols=79 Identities=24% Similarity=0.329 Sum_probs=50.8
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE-------eCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc-
Q psy11418 92 TLSVAGRVHA---IRE--SGTKLMFYDLR-------GEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT- 158 (553)
Q Consensus 92 ~V~v~Gri~~---~R~--~g~kl~Fi~l~-------d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t- 158 (553)
.|.|.||+.+ +|. .|+.++=+.|- +.+.-+.|++-.+. .+ ...+.|..||.|.|+|.+...
T Consensus 5 ~v~LiGrL~~DPelr~t~~G~~v~~fslAv~~~~~~~~t~w~~v~~wg~~----Ae--~~~~~l~KG~~V~V~G~l~~~~ 78 (121)
T PRK07459 5 SVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRRSRDDEPDWFNLEIWGKT----AQ--VAADYVKKGSLIGITGSLKFDR 78 (121)
T ss_pred EEEEEEEccCCCEEEEcCCCCEEEEEEEEecccccCCCceEEEEEEehHH----HH--HHHHHcCCCCEEEEEEEEEecc
Confidence 4788888876 343 34333333333 23446777776542 12 235679999999999998632
Q ss_pred ---cC-C----ceeEeeeeEEEeccC
Q psy11418 159 ---KK-G----ELSIIPKKLTLLSPC 176 (553)
Q Consensus 159 ---~~-g----e~~l~~~~i~il~~~ 176 (553)
+. | ..+|.+++|.+|++.
T Consensus 79 ~~d~d~G~~r~~~ei~a~~i~~L~~k 104 (121)
T PRK07459 79 WTDRNTGEDRSKPVIRVDRLELLGSK 104 (121)
T ss_pred eEcCCCCeEEEEEEEEEeEEEECcCC
Confidence 22 4 368899999999743
No 212
>PRK04036 DNA polymerase II small subunit; Validated
Probab=80.06 E-value=18 Score=40.37 Aligned_cols=109 Identities=18% Similarity=0.249 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCCceEEEEEEeCCE
Q psy11418 40 TSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGL 119 (553)
Q Consensus 40 ~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~ 119 (553)
-..+++.|+.+|..+.....+. ..+..+. ++.. .++++.|.|-|..+|...++-..+.|.|.+|
T Consensus 119 ~~~~y~~R~~~L~~~l~~~~~~--------~~i~~l~----~~~~----~~~~~~viG~v~~~~~~~~g~~~~~LED~sg 182 (504)
T PRK04036 119 FVAYFRDRYEKLSKIIRGRVNH--------RPIESLK----KLKR----GGEEVSIIGMVSDIRSTKNGHKIVELEDTTG 182 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhccc--------ccHHHHh----cCcc----CCceEEEEEEEEEeecccCCceEEEEECCCC
Confidence 4556788999887765432221 1222222 2210 3457999999999985432222478999999
Q ss_pred EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEE
Q psy11418 120 KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLT 171 (553)
Q Consensus 120 ~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~ 171 (553)
.+++++.++. ..+......+-.|.+|+|.|... ..| -.+.|.++.
T Consensus 183 rv~l~~~~~~----~~~~~~~~~lvtg~vv~v~G~~~--~~g-~~f~v~~i~ 227 (504)
T PRK04036 183 TFPVLIMKDR----EDLAELADELLLDEVIGVEGTLS--GDG-GLIFADEII 227 (504)
T ss_pred eEEEEeecch----hhhhhhhhcccCceEEEEEEEEc--CCC-CEEEEEEEE
Confidence 9999986532 12222234689999999999865 333 124455543
No 213
>PRK07211 replication factor A; Reviewed
Probab=80.01 E-value=10 Score=42.09 Aligned_cols=72 Identities=14% Similarity=0.239 Sum_probs=53.6
Q ss_pred cEEEEEEEEEeeec-----------CCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc
Q psy11418 91 VTLSVAGRVHAIRE-----------SGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK 159 (553)
Q Consensus 91 ~~V~v~Gri~~~R~-----------~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~ 159 (553)
..|+|.|||.++-. .| ++.=+.|-|.+|.|.+++..+.. + .....|..||++.|.|.+. ..
T Consensus 64 ~~vtI~aRV~~~~~~Rt~~~~~~~~eG-kv~~v~l~DeTG~Ir~TlW~d~a---d---~~~~~Le~GdV~~I~~~~~-~~ 135 (485)
T PRK07211 64 DEVKFLAKVLSIGDLRTFERDGEDEDG-RVINVEVADETGSVRVAFWDEQA---V---AAEEELEVGQVLRIKGRPK-DG 135 (485)
T ss_pred CceEEEEEEeEccCceEEEeCCCCCCc-EEEEEEEEcCCCeEEEEEechHh---H---hhhcccCCCCEEEEeceEe-cc
Confidence 45999999987633 34 89899999999999999987643 1 2346799999999998764 33
Q ss_pred CCceeEeeeeE
Q psy11418 160 KGELSIIPKKL 170 (553)
Q Consensus 160 ~ge~~l~~~~i 170 (553)
-+.++|.+..+
T Consensus 136 ys~~El~i~~v 146 (485)
T PRK07211 136 YNGLEVSVDKV 146 (485)
T ss_pred ccceEEEEeeE
Confidence 33467777643
No 214
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair. ; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
Probab=79.15 E-value=8.4 Score=33.71 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=34.7
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEe-CCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRG-EGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK 157 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d-~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~ 157 (553)
..|+.|+|-|+|.+....| +. +.+.. +++.++|....+. .+..+.+|.|.|++..
T Consensus 16 ~~gk~VrivGkv~~~~~~g-~~--~~l~~~d~~~V~v~l~~~~------------~~~~~~~vEviG~V~~ 71 (109)
T PF08661_consen 16 FVGKTVRIVGKVESVDPDG-GS--ATLSTSDGGQVTVSLNPPS------------DEELSKYVEVIGKVND 71 (109)
T ss_dssp GTTSEEEEEEEEEEE-TTS-SE--EEEE-TTS-EEEEEESS--------------SS---SEEEEEEEE-T
T ss_pred hCCCeEEEEEEEeeEcCCC-CE--EEEEcCCCCEEEEEeCCCC------------CCCCCCEEEEEEEEcC
Confidence 3688999999999999777 43 33442 3457887776542 2456899999999874
No 215
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=78.94 E-value=11 Score=43.24 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=56.9
Q ss_pred CCCCCccccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeec---CCCceEEEEEEe-CCEEEEEEEecccCCCHHHH
Q psy11418 61 PYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRE---SGTKLMFYDLRG-EGLKIQVMANARMYQSEEEF 136 (553)
Q Consensus 61 pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~---~g~kl~Fi~l~d-~~~~iQvv~~~~~~~~~~~~ 136 (553)
-||.+|.....+..+. +...|+.++|.|.|.+... .+.++.-+.+.| +++.+.+++-.. .|
T Consensus 12 ~~P~~y~d~~~~~~i~---------~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~F~~------~~ 76 (630)
T TIGR00643 12 YFPRRYEDRTLLQTIG---------ELLPGERATIVGEVLSHCIFGFKRRKVLKLRLKDGGYKKLELRFFNR------AF 76 (630)
T ss_pred cCCCceEecCcccCHH---------HcCCCCEEEEEEEEEEeEeccCCCCceEEEEEEECCCCEEEEEEECC------HH
Confidence 5787776543222111 1234678999999876421 123566788899 999999998752 13
Q ss_pred HHHhccCCCCcEEEEEeecccccCCceeEe
Q psy11418 137 ASDLVKIKRGDIIGVTGSPGKTKKGELSII 166 (553)
Q Consensus 137 ~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~ 166 (553)
..+.+..|+.+.|.|++... .|.+.+.
T Consensus 77 --~~~~~~~g~~~~~~Gk~~~~-~~~~~~~ 103 (630)
T TIGR00643 77 --LKKKFKVGSKVVVYGKVKSS-KFKAYLI 103 (630)
T ss_pred --HHhhCCCCCEEEEEEEEEee-CCEEEEE
Confidence 34679999999999999753 3334443
No 216
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=78.68 E-value=13 Score=31.43 Aligned_cols=48 Identities=29% Similarity=0.428 Sum_probs=29.6
Q ss_pred EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc----cCC----ceeEeeeeEEEe
Q psy11418 120 KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT----KKG----ELSIIPKKLTLL 173 (553)
Q Consensus 120 ~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t----~~g----e~~l~~~~i~il 173 (553)
.++|++..+. .+ .....+..||.|.|.|.+... +.| .++|.|++|.+|
T Consensus 49 ~~~v~~~g~~----A~--~~~~~l~kG~~V~V~G~l~~~~~~~~~G~~~~~~~i~a~~i~fl 104 (104)
T PF00436_consen 49 WINVVAWGKL----AE--NVAEYLKKGDRVYVEGRLRTRTYEDKDGQKRYRVEIIADNIEFL 104 (104)
T ss_dssp EEEEEEEHHH----HH--HHHHH--TT-EEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEE-
T ss_pred EEEEEeeeec----cc--ccceEEcCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEeC
Confidence 6777776552 11 235669999999999988632 234 368888888765
No 217
>PRK08486 single-stranded DNA-binding protein; Provisional
Probab=78.55 E-value=15 Score=35.43 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=36.0
Q ss_pred EEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc----cCC----ceeEeeeeEEEeccC
Q psy11418 119 LKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT----KKG----ELSIIPKKLTLLSPC 176 (553)
Q Consensus 119 ~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t----~~g----e~~l~~~~i~il~~~ 176 (553)
..+-|++-.+. .+ .+.+.|+.||-|.|+|.+... +.| .++|.|++|.+|++.
T Consensus 49 ~fi~v~~fg~~----AE--~~~~~l~KG~~V~VeGrL~~~~y~dkdG~~r~~~eI~a~~v~~L~~~ 108 (182)
T PRK08486 49 CFIDIRLFGRT----AE--IANQYLSKGSKVLIEGRLTFESWMDQNGQKRSKHTITAESMQMLDSK 108 (182)
T ss_pred eEEEEEEEhHH----HH--HHHHHcCCCCEEEEEEEEEeCcEECCCCcEEEEEEEEEeEEEECCCC
Confidence 45666665442 12 235679999999999998633 233 378999999999755
No 218
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=78.41 E-value=12 Score=35.57 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=49.5
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE-e--------C-----CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 92 TLSVAGRVHA---IRE--SGTKLMFYDLR-G--------E-----GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 92 ~V~v~Gri~~---~R~--~g~kl~Fi~l~-d--------~-----~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
+|.|.|||.+ +|. .|++++=+.|- + + +.-+.|++..+. .+ .+.+.|+.||.|.|+
T Consensus 6 ~V~LiGrLg~DPElR~t~nG~~va~fsVAvn~~~~d~~~Ge~~e~t~w~~Vv~fgk~----AE--~v~~~LkKGs~V~Ve 79 (168)
T PRK06863 6 KVIIVGHLGNDPEIRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQ----AE--VAGEYLRKGSQVYVE 79 (168)
T ss_pred EEEEEEEcCCCCEEEEcCCCCEEEEEEEEecCcccccCCCcccccceEEEEEEEhHH----HH--HHHHHCCCCCEEEEE
Confidence 5888888877 454 34333322222 1 1 224666665542 22 245679999999999
Q ss_pred eecccc----cCC----ceeEeeeeEEEeccC
Q psy11418 153 GSPGKT----KKG----ELSIIPKKLTLLSPC 176 (553)
Q Consensus 153 G~~~~t----~~g----e~~l~~~~i~il~~~ 176 (553)
|.+... +.| .++|.+.+|.+|+.-
T Consensus 80 GrL~~r~w~DkdG~~r~~~eI~a~~i~~L~~r 111 (168)
T PRK06863 80 GRLKTRKWQDQNGQDRYTTEIQGDVLQMLGGR 111 (168)
T ss_pred EEEEeCCccCCCCCEEEEEEEEEeEEEECCCC
Confidence 998633 233 478899999998643
No 219
>PRK07275 single-stranded DNA-binding protein; Provisional
Probab=78.10 E-value=19 Score=34.08 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=50.5
Q ss_pred EEEEEEEEEe---ee--cCCCceEEEEEE------e-----CCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeec
Q psy11418 92 TLSVAGRVHA---IR--ESGTKLMFYDLR------G-----EGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSP 155 (553)
Q Consensus 92 ~V~v~Gri~~---~R--~~g~kl~Fi~l~------d-----~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~ 155 (553)
.|.|.||+.+ +| ..|..++-+.|- + .+..+.|++-.+. .++ +.+.|..||.|.|+|.+
T Consensus 4 ~v~LiGrL~~DPElr~t~sG~~v~~ftlAv~r~~~~~~ge~~tdfi~vv~wgk~----Ae~--~~~~l~KG~~V~VeGrl 77 (162)
T PRK07275 4 NVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINCVIWRQQ----AEN--LANWAKKGALIGVTGRI 77 (162)
T ss_pred EEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecCCCCEeeeEEEEEEEcHH----HHH--HHHHcCCCCEEEEEEEE
Confidence 4677777764 34 244445444442 1 1246777777653 222 35679999999999998
Q ss_pred ccc----cCC----ceeEeeeeEEEeccC
Q psy11418 156 GKT----KKG----ELSIIPKKLTLLSPC 176 (553)
Q Consensus 156 ~~t----~~g----e~~l~~~~i~il~~~ 176 (553)
... +.| ..+|.|.++.+|.+.
T Consensus 78 ~~r~y~dkdG~k~~~~evva~~i~~l~~~ 106 (162)
T PRK07275 78 QTRNYENQQGQRVYVTEVVADNFQMLESR 106 (162)
T ss_pred EeceEECCCCCEEEEEEEEEeEEEECCCC
Confidence 632 234 368889999988644
No 220
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=76.91 E-value=19 Score=41.29 Aligned_cols=79 Identities=18% Similarity=0.136 Sum_probs=58.4
Q ss_pred cCCcEEEEEEEEEeeecC---CCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 88 LENVTLSVAGRVHAIRES---GTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~---g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
..|+.|+|.|.|.+.-.. +++..=+.+.|+++.+-+++-... .| ..+.++.|..|.|+|++.. -.|+.+
T Consensus 58 ~~g~~vti~g~V~~~~~~~~~~~~~l~v~~~d~~~~l~l~fFn~~-----~~--l~~~~~~G~~v~v~Gk~~~-~~~~~~ 129 (677)
T COG1200 58 RPGEIVTIEGTVLSHEKFPFGKRKLLKVTLSDGTGVLTLVFFNFP-----AY--LKKKLKVGERVIVYGKVKR-FKGGLQ 129 (677)
T ss_pred CCCceEEEEEEEEeeeccCCCCCceEEEEEecCcEEEEEEEECcc-----HH--HHhhCCCCCEEEEEEEEee-ccCceE
Confidence 357789999999776544 456666888899999988886542 12 4577999999999999986 445566
Q ss_pred EeeeeEEEec
Q psy11418 165 IIPKKLTLLS 174 (553)
Q Consensus 165 l~~~~i~il~ 174 (553)
+.--++.+.+
T Consensus 130 ~~hpe~~~~~ 139 (677)
T COG1200 130 ITHPEYIVND 139 (677)
T ss_pred EEcceEEecC
Confidence 6666666654
No 221
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=76.76 E-value=11 Score=31.93 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=42.0
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEe
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTG 153 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G 153 (553)
.+.|.|.+++..+. =+|+.|.|.+|.+++.+.++.. ...-..|..|+++-.+-
T Consensus 6 ~l~v~Iks~~~~~~-D~~v~l~DpTG~i~~tiH~~v~------~~y~~~l~~GavLlLk~ 58 (86)
T PF15072_consen 6 CLVVIIKSIVPSSE-DAFVVLKDPTGEIRGTIHRKVL------EEYGDELSPGAVLLLKD 58 (86)
T ss_pred EEEEEEEEeeccCC-CeEEEEECCCCcEEEEEeHHHH------hhcCCccccCEEEEEee
Confidence 58999999999984 6799999999999999987643 12345688888776643
No 222
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=76.72 E-value=32 Score=31.17 Aligned_cols=72 Identities=24% Similarity=0.413 Sum_probs=47.1
Q ss_pred CCcEEEEEEEEE--eeec--CCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 89 ENVTLSVAGRVH--AIRE--SGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 89 ~~~~V~v~Gri~--~~R~--~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
.++.|+|.|+|. ++.. .+..+.| .|.|+...+.|+..... ++. +..|..|.|+|.+. ..| .
T Consensus 49 ~~~~vrv~G~V~~gSv~~~~~~~~~~F-~i~D~~~~i~V~Y~G~~---Pd~-------F~eg~~VVv~G~~~--~~g--~ 113 (131)
T PF03100_consen 49 VGRKVRVGGLVVEGSVEYDPDGNTLTF-TITDGGKEIPVVYTGPL---PDL-------FREGQGVVVEGRLG--EDG--V 113 (131)
T ss_dssp TTSEEEEEEEEECTTEEE-TTSSEEEE-EEE-SS-EEEEEEES-----CTT---------TTSEEEEEEEEC--CTS--E
T ss_pred CCceEEEeeEEccCCEEEcCCCCEEEE-EEEECCcEEEEEECCCC---Ccc-------ccCCCeEEEEEEEC--CCC--E
Confidence 678999999998 6654 3446775 56898889999988643 233 47799999999983 223 3
Q ss_pred EeeeeEEEeccCC
Q psy11418 165 IIPKKLTLLSPCL 177 (553)
Q Consensus 165 l~~~~i~il~~~~ 177 (553)
..++ +||.||.
T Consensus 114 F~A~--~lL~Kcp 124 (131)
T PF03100_consen 114 FEAT--ELLAKCP 124 (131)
T ss_dssp EEEE--EEEETS-
T ss_pred EEEE--EEEeCCC
Confidence 4444 5788884
No 223
>PRK12366 replication factor A; Reviewed
Probab=76.53 E-value=10 Score=43.73 Aligned_cols=71 Identities=17% Similarity=0.280 Sum_probs=54.9
Q ss_pred EEEEEEEEEee---e----cCC--CceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCc
Q psy11418 92 TLSVAGRVHAI---R----ESG--TKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGE 162 (553)
Q Consensus 92 ~V~v~Gri~~~---R----~~g--~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge 162 (553)
.|+|.|||.++ | ..| +++.=+.|.|.+|.|.+++-.+.. +....|..||++.|.|-..+.-.|.
T Consensus 75 ~v~i~arV~~~~~~r~~~~~~G~eGkv~~~~v~DetG~Ir~t~W~~~~-------~~~~~le~G~v~~i~~~~v~~~~~~ 147 (637)
T PRK12366 75 NVEITGRIIEISNIKTFTRKDGSTGKLANITIADNTGTIRLTLWNDNA-------KLLKGLKEGDVIKIENARSRKWNND 147 (637)
T ss_pred ceEEEEEEEEccCCeEEECCCCCccEEEEEEEEcCCCEEEEEEEchhh-------hhhccCCCCCEEEEeccEecccCCc
Confidence 59999999766 3 222 378889999999999999987642 2246799999999998877777777
Q ss_pred eeEeeee
Q psy11418 163 LSIIPKK 169 (553)
Q Consensus 163 ~~l~~~~ 169 (553)
++|....
T Consensus 148 ~el~~~~ 154 (637)
T PRK12366 148 VELNSGS 154 (637)
T ss_pred eEEEcCC
Confidence 8886643
No 224
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=76.39 E-value=6 Score=47.50 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=50.0
Q ss_pred CCcEEEEEEEEEeeec---CCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc
Q psy11418 89 ENVTLSVAGRVHAIRE---SGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK 159 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~---~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~ 159 (553)
.+..|+|.|.|.++|. .|+.++|+.+.|.++.+.+++-.+. |.... .+..|+++.|+|+..+.+
T Consensus 896 ~~~~~~v~g~i~~~~~~~K~g~~maf~~~eD~~~~~e~~~F~~~------~~~~~-~l~~~~~~~~~~~~~~~~ 962 (973)
T PRK07135 896 INTEYRLAIEVKNVKRLRKANKEYKKVILSDDSVEITIFVNDND------YLLFE-TLKKGDIYEFLISKSKNN 962 (973)
T ss_pred CCCeEEEEEEEEEEEEEeeCCCeEEEEEEEECCCcEEEEEcHHH------HHHHH-HhhcCCEEEEEEEEcCCC
Confidence 3567899999998764 3667999999999999999998653 33333 488999999999876543
No 225
>KOG3108|consensus
Probab=75.43 E-value=19 Score=36.87 Aligned_cols=77 Identities=18% Similarity=0.233 Sum_probs=57.3
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeE
Q psy11418 91 VTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKL 170 (553)
Q Consensus 91 ~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i 170 (553)
..|++.|||+++-... .=++++|-|+++.|=+.......... .....|..|-.|.|.|.+. ...|..+|.+..|
T Consensus 69 ~~v~~VGivr~~e~~~-t~i~y~I~D~tg~id~r~W~~~~~~~----~e~~~l~~~~yVkv~G~Lk-~f~Gk~sl~~fkI 142 (265)
T KOG3108|consen 69 SAVSIVGIVRNIEKSA-TNITYEIEDGTGQIDVRQWFHDNAES----EEMPALETGTYVKVYGHLK-PFQGKKSLQVFKI 142 (265)
T ss_pred EEEEEEEEEEeceecC-cceEEEEecCcccEEEEEeccccchh----hhCcccccCcEEEeeeccc-CCCCceeEEEEee
Confidence 4689999999999998 45678999999987777665432111 1345799999999999975 5677778877766
Q ss_pred EEe
Q psy11418 171 TLL 173 (553)
Q Consensus 171 ~il 173 (553)
.-+
T Consensus 143 ~pv 145 (265)
T KOG3108|consen 143 RPV 145 (265)
T ss_pred eee
Confidence 543
No 226
>PRK06752 single-stranded DNA-binding protein; Validated
Probab=75.37 E-value=29 Score=30.47 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=34.7
Q ss_pred EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc----cCC----ceeEeeeeEEEeccC
Q psy11418 120 KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT----KKG----ELSIIPKKLTLLSPC 176 (553)
Q Consensus 120 ~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t----~~g----e~~l~~~~i~il~~~ 176 (553)
.+-|++-.+. .+ ...+.+..||.|.|+|.+... +.| ..+|.++++.+|++.
T Consensus 48 ~~~v~~wg~~---Ae---~~~~~l~KG~~V~V~G~l~~~~~~~~~G~~~~~~ei~a~~i~~l~~~ 106 (112)
T PRK06752 48 FINCVVWRKS---AE---NVTEYCTKGSLVGITGRIHTRNYEDDQGKRIYITEVVIESITFLERR 106 (112)
T ss_pred EEEEEEehHH---HH---HHHHhcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEECCCC
Confidence 4556655432 12 235679999999999998633 223 368889999988754
No 227
>PRK15491 replication factor A; Provisional
Probab=74.71 E-value=11 Score=40.45 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=57.4
Q ss_pred EEEEEEEEEeeec-------CCC--ceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc--cC
Q psy11418 92 TLSVAGRVHAIRE-------SGT--KLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT--KK 160 (553)
Q Consensus 92 ~V~v~Gri~~~R~-------~g~--kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t--~~ 160 (553)
.|.|.|+|.++-. .|. ++.=+.|.|.+|.+.+.+..+.. .....|..||.|.+.+--.+. -.
T Consensus 178 ~V~I~g~V~~~~~~r~~~~~~G~~~~v~~~~l~DetG~Ir~t~W~~~a-------~~~~~l~~Gd~V~i~~~~~r~~~~~ 250 (374)
T PRK15491 178 DINIVGKVLDISDVRTFQKKDGSQGRVRNITIGDETGKIRVTLWDGKT-------DLADKLENGDSVEIINGYARTNNYS 250 (374)
T ss_pred cEEEEEEEEEccCceEEEecCCCeEEEEEEEEECCCCeEEEEEecchh-------cccccCCCCCEEEEEeceEEEeccC
Confidence 4999999988742 342 56668899999999999987643 123468999999997643332 26
Q ss_pred CceeEeeeeEEEeccCC
Q psy11418 161 GELSIIPKKLTLLSPCL 177 (553)
Q Consensus 161 ge~~l~~~~i~il~~~~ 177 (553)
|+++|.+.+-..+.+|.
T Consensus 251 g~~El~~~~~s~I~~~~ 267 (374)
T PRK15491 251 QEVEIQIGNHGSLRKTD 267 (374)
T ss_pred CCEEEEeCCCceEEECC
Confidence 88999887666676764
No 228
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=74.19 E-value=3.3 Score=41.86 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 425 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 425 l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.+.|..+...+++.|.+.||.||.||+|...+
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~ 33 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTE 33 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHH
Confidence 36789999999999999999999999998875
No 229
>PRK06293 single-stranded DNA-binding protein; Provisional
Probab=74.00 E-value=29 Score=32.79 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=35.3
Q ss_pred EEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc----cCC----ceeEeeeeEEEeccC
Q psy11418 119 LKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT----KKG----ELSIIPKKLTLLSPC 176 (553)
Q Consensus 119 ~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t----~~g----e~~l~~~~i~il~~~ 176 (553)
.-+.|++-.+. .. ...+.|..||.|.|+|.+... +.| .++|.|..|.+|+-.
T Consensus 43 ~wi~v~awg~~----Ae--~v~~yL~KG~~V~VeGrL~~~~y~dkdG~kr~~~eIva~~I~fl~~~ 102 (161)
T PRK06293 43 VWCRCNIWGNR----YD--KMLPYLKKGSGVIVAGEMSPESYVDKDGSPQSSLVVSVDTIKFSPFG 102 (161)
T ss_pred EEEEEEEEhHH----HH--HHHHhCCCCCEEEEEEEEEeCccCCCCCCEEEEEEEEEeEEEECcCC
Confidence 35666665532 11 245679999999999998632 233 368889999998543
No 230
>PRK06751 single-stranded DNA-binding protein; Provisional
Probab=73.82 E-value=28 Score=33.27 Aligned_cols=50 Identities=20% Similarity=0.370 Sum_probs=35.1
Q ss_pred EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc----cCC----ceeEeeeeEEEecc
Q psy11418 120 KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT----KKG----ELSIIPKKLTLLSP 175 (553)
Q Consensus 120 ~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t----~~g----e~~l~~~~i~il~~ 175 (553)
.+-|++-.+. .+ ...+.|..||.|.|+|.+... +.| .++|.|+.|.+|.+
T Consensus 48 wi~~v~wgk~----Ae--~~~~~l~KG~~V~VeGrL~~r~yedkdG~~~~~~eVva~~i~~l~~ 105 (173)
T PRK06751 48 FINCVIWRKQ----AE--NVANYLKKGSLAGVDGRLQTRNYEGQDGKRVYVTEVLAESVQFLEP 105 (173)
T ss_pred EEEEEEeCcH----HH--HHHHHcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEeCcC
Confidence 5666666542 11 245679999999999998643 234 47888899988864
No 231
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=73.61 E-value=3.6 Score=38.75 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHH-hCCcEEeeCceeeccC--CCcc--------eeeeeecCCCCCcceeEEeChhHHHHH
Q psy11418 427 VRAQIIAYVRRYLD-SLGFLEVETPMMNMIA--GGAT--------AKPFVTHHNDLNMDLYMRIAPELYLKS 487 (553)
Q Consensus 427 ~Rs~i~~~iR~f~~-~~~F~EV~TPiL~~~~--~ga~--------~~~~~t~~~~~~~~~yL~~Spel~~k~ 487 (553)
++++|.+.+++.+. +.||.||.||+|.+.. .+++ ++.+.... +.+.+|+-+.+..+=.
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~---~~~~~L~pt~~~~~~~ 69 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRG---DEEYCLRPTSEPGIYS 69 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETT---TEEEEE-SSSHHHHHH
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecc---cccEEeccccccceee
Confidence 57899999999999 9999999999999887 2222 34443211 2568888886554443
No 232
>PRK07211 replication factor A; Reviewed
Probab=73.42 E-value=15 Score=40.79 Aligned_cols=80 Identities=10% Similarity=0.136 Sum_probs=58.1
Q ss_pred cEEEEEEEEEeee-------cCC--CceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCC
Q psy11418 91 VTLSVAGRVHAIR-------ESG--TKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKG 161 (553)
Q Consensus 91 ~~V~v~Gri~~~R-------~~g--~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~g 161 (553)
..|.|.|||.++- ..| .++.=+.|-|.+|.|.+.+..+.. + .+..|..|++|.|.|--.+...|
T Consensus 172 ~~v~I~grV~~v~~iRtf~r~dGseGkv~sv~L~DeTG~IR~TlW~d~A---d----~~~~le~G~Vv~I~~a~Vre~~g 244 (485)
T PRK07211 172 SDVTLVGVVLDTDSVRTFDRDDGSEGRVSNLTVGDETGRVRVTLWDDRA---D----LAEELDAGESVEIVDGYVRERDG 244 (485)
T ss_pred CceEEEEEEEEcCCCeEEECCCCCeeEEEEEEEEcCCCeEEEEEechhh---h----hhccCCCCCEEEEEeeEEEecCC
Confidence 4589999998542 222 266668899999999999987642 1 23568999999998644455568
Q ss_pred ceeEeeeeEEEeccCC
Q psy11418 162 ELSIIPKKLTLLSPCL 177 (553)
Q Consensus 162 e~~l~~~~i~il~~~~ 177 (553)
.++|.+..-..+.+|.
T Consensus 245 ~~ELsl~~~s~I~~~~ 260 (485)
T PRK07211 245 SLELHVGDRGAVEEVD 260 (485)
T ss_pred cEEEEECCCceEEECC
Confidence 9999887776666663
No 233
>PRK14699 replication factor A; Provisional
Probab=73.31 E-value=16 Score=40.56 Aligned_cols=80 Identities=18% Similarity=0.185 Sum_probs=58.1
Q ss_pred cEEEEEEEEEeeec-------CC--CceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc--
Q psy11418 91 VTLSVAGRVHAIRE-------SG--TKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-- 159 (553)
Q Consensus 91 ~~V~v~Gri~~~R~-------~g--~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~-- 159 (553)
..|+|.|+|.++=. .| +++.=+.|-|.+|++.+++-.+.. +....|..||+|.|.|-..+..
T Consensus 177 ~~V~i~gkVl~~~~~R~f~~~dG~~g~v~~~~igDeTG~ir~tlW~~~a-------~~~~~l~~Gd~v~I~~a~vr~~~~ 249 (484)
T PRK14699 177 GDLNLTGKVLEISEIRTFQRKDGTSGKVGNLLLGDETGTLRVTLWDDKT-------DFLNQIEYGDTVELINAYARENAF 249 (484)
T ss_pred CceEEEEEEEeccCceEEecCCCCceEEEEEEEEcCCceEEEEEECccc-------ccccccCCCCEEEEecceEeeccc
Confidence 35899999987632 23 134446899999999999988642 1344689999999986655443
Q ss_pred CCceeEeeeeEEEeccCC
Q psy11418 160 KGELSIIPKKLTLLSPCL 177 (553)
Q Consensus 160 ~ge~~l~~~~i~il~~~~ 177 (553)
.|.++|.+....++.++.
T Consensus 250 ~~~~el~~~~~s~i~~~~ 267 (484)
T PRK14699 250 TQKVELQVGNRSIIRKSE 267 (484)
T ss_pred CCceEEEecCceEeeccc
Confidence 388999998888777664
No 234
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=71.32 E-value=11 Score=29.56 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=35.4
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.+.|+|.++...| +|+.|-++ +...+..... +.+........+..||.|.+.
T Consensus 3 ~v~g~V~~v~~~G---v~V~l~~~---~~G~v~~s~l-~~~~~~~~~~~~~~Gd~v~~~ 54 (68)
T cd05707 3 VVRGFVKNIANNG---VFVTLGRG---VDARVRVSEL-SDSYLKDWKKRFKVGQLVKGK 54 (68)
T ss_pred EEEEEEEEEECcc---EEEEeCCC---CEEEEEHHHC-CchhhcCHhhccCCCCEEEEE
Confidence 4799999999888 79999764 5556655443 122222234558999999874
No 235
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=70.98 E-value=15 Score=42.01 Aligned_cols=115 Identities=14% Similarity=0.043 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhhhCCeEEEecceeccccC-----C-CC-CcceeeccCCCCcc-eeeeeCHHHHHHHHHHccCC-----
Q psy11418 214 RAQIIAYVRRYLDSLGFLEVETPMMNMIAG-----G-AT-AKPFVTHHNDLNMD-LYMRIAPELYLKMLVVGGLD----- 280 (553)
Q Consensus 214 rs~i~~~ir~fl~~~gF~EV~TPil~~~~g-----g-a~-a~~F~t~~~~~~~~-~~L~~Spql~lk~l~~~g~~----- 280 (553)
..++.+.+|+.|...||.||-|-.|.+... + .. ......-.|-...+ -+||.|-=--|=..+.....
T Consensus 399 ~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~~~~~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~~~~p~ 478 (597)
T PLN02265 399 LNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKPI 478 (597)
T ss_pred HHHHHHHHHHHHHHCCceeeeceeeCChHHHHHhhcCCccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhcCCCCe
Confidence 345566789999999999999999964311 0 00 00111111222222 23665532222112222332
Q ss_pred cEEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 281 rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
|+||||.+|-.......-..|-+++-+-.+.. ++.++-.+++.++..+
T Consensus 479 klFEiG~V~~~~~~~~~~~~e~~~la~~~~g~~~~f~~ikg~le~ll~~l 528 (597)
T PLN02265 479 KLFEVSDVVLLDESKDVGARNSRRLAALYCGTTSGFEVIHGLVDRIMEVL 528 (597)
T ss_pred eEEEeEeEEecCCcccCCcchhhEEEEEEECCCCCHhhHHHHHHHHHHHc
Confidence 89999999954321111113555655555554 7999999999999766
No 236
>PRK07218 replication factor A; Provisional
Probab=70.68 E-value=25 Score=38.46 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=54.0
Q ss_pred EEEEEEEEEee--e----cCC-CceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 92 TLSVAGRVHAI--R----ESG-TKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 92 ~V~v~Gri~~~--R----~~g-~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
.|+|.|+|.++ | +-| +.+.=..|-|.+|+|.+++..+. ..|..||+|.|.|-..+.-.|.++
T Consensus 174 ~V~v~g~Vl~~~~r~f~~~dg~~~v~~giigDeTG~Ir~tlW~~~-----------~~l~~Gd~v~I~na~v~e~~G~~e 242 (423)
T PRK07218 174 GVNVEARVLELEHREIDGRDGETTILSGVLADETGRLPFTDWDPL-----------PEIEIGASIRIEDAYVREFRGVPS 242 (423)
T ss_pred ceEEEEEEEEecceeEEcCCCCeEEEEEEEECCCceEEEEEeccc-----------ccCCCCCEEEEeeeEEeccCCeEE
Confidence 48899999877 1 112 23444567899999999887642 248999999999988888889999
Q ss_pred EeeeeEEEecc
Q psy11418 165 IIPKKLTLLSP 175 (553)
Q Consensus 165 l~~~~i~il~~ 175 (553)
|.+.+-.-+..
T Consensus 243 lnv~~~t~I~~ 253 (423)
T PRK07218 243 VNVSEFTTVEA 253 (423)
T ss_pred EEECCceEEEE
Confidence 99986544443
No 237
>PRK07217 replication factor A; Reviewed
Probab=70.65 E-value=33 Score=35.84 Aligned_cols=82 Identities=15% Similarity=0.088 Sum_probs=63.6
Q ss_pred CcEEEEEEEEEee--ecCCCceEE-EEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEe
Q psy11418 90 NVTLSVAGRVHAI--RESGTKLMF-YDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSII 166 (553)
Q Consensus 90 ~~~V~v~Gri~~~--R~~g~kl~F-i~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~ 166 (553)
++-|+|.|+|.++ +.++ .+.. -.|-|.+|+|-.+...+.. ...|..|++|.+.+-..+.-.|.++|.
T Consensus 82 ~~~VsV~aKVl~l~e~~~~-si~qvGllgDETG~IkfT~W~~s~---------~~~leeGd~~rI~na~v~ey~G~~~ln 151 (311)
T PRK07217 82 EQWVDVTAKVVQLWEPSSD-SIAQVGLLGDETGTIKFTKWAKSD---------LPELEEGKSYLLKNVVTDEYQGRFSVK 151 (311)
T ss_pred CCcEEEEEEEEEecCCCCC-ceEEEEEEEcCCceEEEEEccCCC---------CCcccCCCEEEEEeEEEeeECCEEEEE
Confidence 4569999999987 3344 5666 5677999999999887521 234899999999999998889999999
Q ss_pred eeeEEEeccCCCCCC
Q psy11418 167 PKKLTLLSPCLHMLP 181 (553)
Q Consensus 167 ~~~i~il~~~~~~lP 181 (553)
+.+...+......++
T Consensus 152 lg~~t~I~~~de~Ie 166 (311)
T PRK07217 152 LNRTTSIEELDEDIE 166 (311)
T ss_pred eCCceEEEeCCCCcc
Confidence 988877776655444
No 238
>PRK08402 replication factor A; Reviewed
Probab=70.56 E-value=24 Score=37.65 Aligned_cols=77 Identities=17% Similarity=0.159 Sum_probs=54.2
Q ss_pred cEEEEEEEEEee---e----cCC--CceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc-cC
Q psy11418 91 VTLSVAGRVHAI---R----ESG--TKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT-KK 160 (553)
Q Consensus 91 ~~V~v~Gri~~~---R----~~g--~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t-~~ 160 (553)
..|++.|+|.++ | +.| +++.=+.|.|++|++.+++..+.. . .....+..||+|.|.|--++. -.
T Consensus 73 ~~V~v~~rVl~~~~~r~f~rrdG~~~~V~~i~l~DeTG~ir~TlW~~~a---~---~~~~~l~~Gdvi~I~~a~V~e~~~ 146 (355)
T PRK08402 73 RGVNIVGRVLRKYPPREYTKKDGSTGRVASLIIYDDTGRARVVLWDAKV---A---KYYNKINVGDVIKVIDAQVRESLS 146 (355)
T ss_pred ceeeEEEEEEEccCCceeeccCCCcceEEEEEEEcCCCeEEEEEechhh---h---hhcccCCCCCEEEEECCEEeecCC
Confidence 469999999987 3 234 134448999999999999887532 1 123469999999999655554 47
Q ss_pred CceeEeeeeEEEe
Q psy11418 161 GELSIIPKKLTLL 173 (553)
Q Consensus 161 ge~~l~~~~i~il 173 (553)
|.++|.+..-.-+
T Consensus 147 G~~eLsvg~~s~i 159 (355)
T PRK08402 147 GLPELHINFRARI 159 (355)
T ss_pred CcEEEEECCCceE
Confidence 7778888655433
No 239
>TIGR00621 ssb single stranded DNA-binding protein (ssb). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.46 E-value=38 Score=31.95 Aligned_cols=79 Identities=22% Similarity=0.358 Sum_probs=47.6
Q ss_pred EEEEEEEEEe---eecC--CCceEEEEEE-e------------CCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEe
Q psy11418 92 TLSVAGRVHA---IRES--GTKLMFYDLR-G------------EGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTG 153 (553)
Q Consensus 92 ~V~v~Gri~~---~R~~--g~kl~Fi~l~-d------------~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G 153 (553)
.|+|.|+|.. +|.. |+.++=+.|. + .+..+-|++-.+. .. ...+.|..||.|.|+|
T Consensus 6 ~V~L~G~l~~dPe~r~t~~G~~v~~fsvA~~~~~~~~~G~~~~~t~~~~v~~wg~~----Ae--~~~~~l~KG~~V~V~G 79 (164)
T TIGR00621 6 KVILVGRLTRDPELRYTPSGNAVANFTLATNRRWKDQDGEWKEETEWHDIVIFGRL----AE--VAAQYLKKGSLVYVEG 79 (164)
T ss_pred EEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCceecCCCCEeccceEEEEEEehHH----HH--HHHHhCCCCCEEEEEE
Confidence 4778888877 4533 4333322222 1 1234555555432 11 2456899999999999
Q ss_pred ecccc----cCC----ceeEeeeeEEEeccC
Q psy11418 154 SPGKT----KKG----ELSIIPKKLTLLSPC 176 (553)
Q Consensus 154 ~~~~t----~~g----e~~l~~~~i~il~~~ 176 (553)
.+... +.| .++|.|++|.+|...
T Consensus 80 ~L~~~~~~~kdG~~~~~~ev~a~~i~~L~~~ 110 (164)
T TIGR00621 80 RLRTRKWEDQNGQKRSKTEIIADNVQLLDLL 110 (164)
T ss_pred EEEeceEECCCCcEEEEEEEEEEEEeecccc
Confidence 98643 233 378888888877543
No 240
>PRK02801 primosomal replication protein N; Provisional
Probab=70.42 E-value=41 Score=29.05 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=33.0
Q ss_pred EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc--ccCC--ceeEeeeeEEEe
Q psy11418 120 KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK--TKKG--ELSIIPKKLTLL 173 (553)
Q Consensus 120 ~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~--t~~g--e~~l~~~~i~il 173 (553)
.|+|++-.+. .+ ...+.+..|+.|.|+|.+.. ++.| .+.|+++.++.+
T Consensus 49 ~i~~va~G~~----Ae--~~~~~l~kGs~v~V~G~L~~~~~~~g~~~~~v~~~~i~~l 100 (101)
T PRK02801 49 RMPVIVSGNQ----FQ--AITQSITVGSKITVQGFISCHQGRNGLSKLVLHAEQIELI 100 (101)
T ss_pred EEEEEEEcHH----HH--HHHhhcCCCCEEEEEEEEEEeECCCCCEEEEEEEEEEEEC
Confidence 3778877643 11 23457999999999999974 3444 256777777765
No 241
>PRK08763 single-stranded DNA-binding protein; Provisional
Probab=68.45 E-value=32 Score=32.58 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=49.9
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEEe--------C-----CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEe
Q psy11418 92 TLSVAGRVHA---IRE--SGTKLMFYDLRG--------E-----GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTG 153 (553)
Q Consensus 92 ~V~v~Gri~~---~R~--~g~kl~Fi~l~d--------~-----~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G 153 (553)
.|.|.|||.+ +|. .|..++-+.|-- + +.-+.|++-.+. .+ ...+.|..||.|.|+|
T Consensus 7 kv~LiGrLg~DPelr~t~~G~~va~fsVA~~~~~k~~~G~~~e~t~w~~Vv~fgk~----Ae--~v~~~L~KGs~V~VeG 80 (164)
T PRK08763 7 KVILVGNLGNDPDIKYTQSGMTITRISLATTSVRKDREGNTQERTEWHRVKFFGKL----GE--IAGEYLRKGSQCYIEG 80 (164)
T ss_pred EEEEEEEecCCCeEEEcCCCCeEEEEEEEeccceecCCCCeeccceEEEEEEehHH----HH--HHHHhcCCCCEEEEEE
Confidence 5888999887 453 343444444431 1 123666665432 12 2456799999999999
Q ss_pred ecccc----cCC----ceeEeeeeEEEeccC
Q psy11418 154 SPGKT----KKG----ELSIIPKKLTLLSPC 176 (553)
Q Consensus 154 ~~~~t----~~g----e~~l~~~~i~il~~~ 176 (553)
.+... +.| .++|.++++.+|+..
T Consensus 81 rL~~~~y~dkdG~kr~~~eIva~~i~~L~~~ 111 (164)
T PRK08763 81 SIRYDKFTGQDGQERYVTEIVADEMQMLGGR 111 (164)
T ss_pred EEEeceeECCCCCEEEEEEEEEeEEEECCCC
Confidence 98643 234 478999999998754
No 242
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=68.21 E-value=50 Score=30.80 Aligned_cols=74 Identities=12% Similarity=0.237 Sum_probs=51.5
Q ss_pred cCCcEEEEEEEEE--eeec-CCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 88 LENVTLSVAGRVH--AIRE-SGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 88 ~~~~~V~v~Gri~--~~R~-~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
..++.|+|.|.|. ++.. .+..+.| .|.|++..+.|..+... ++. ++-|..|.|+|.+... | .
T Consensus 49 ~~g~~vrvgG~V~~gSi~~~~~~~~~F-~ltD~~~~i~V~Y~G~l---Pd~-------F~eg~~VVv~G~~~~~--g--~ 113 (148)
T PRK13254 49 PAGRRFRLGGLVEKGSVQRGDGLTVRF-VVTDGNATVPVVYTGIL---PDL-------FREGQGVVAEGRLQDG--G--V 113 (148)
T ss_pred cCCCeEEEeEEEecCcEEeCCCCEEEE-EEEeCCeEEEEEECCCC---Ccc-------ccCCCEEEEEEEECCC--C--e
Confidence 3678899999995 4544 4446776 67899888888877542 233 4679999999998632 3 3
Q ss_pred EeeeeEEEeccCCC
Q psy11418 165 IIPKKLTLLSPCLH 178 (553)
Q Consensus 165 l~~~~i~il~~~~~ 178 (553)
+.++ +||.||..
T Consensus 114 F~A~--~vLaKc~s 125 (148)
T PRK13254 114 FVAD--EVLAKHDE 125 (148)
T ss_pred EEEE--EEEecCCC
Confidence 4444 57889854
No 243
>PRK07218 replication factor A; Provisional
Probab=66.47 E-value=32 Score=37.62 Aligned_cols=69 Identities=19% Similarity=0.165 Sum_probs=52.9
Q ss_pred CcEEEEEEEEEeee-----cCC--CceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCc
Q psy11418 90 NVTLSVAGRVHAIR-----ESG--TKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGE 162 (553)
Q Consensus 90 ~~~V~v~Gri~~~R-----~~g--~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge 162 (553)
++.|.|.|+|.++- ..| +.+.=+.|-|.+|++.+++..+. .|..||+|.|.+-..+.-.|.
T Consensus 68 ~~~V~v~~kVl~i~~rt~r~dg~~g~v~~~~igDeTG~Ir~tlW~~~------------~l~~Gdvv~I~na~vre~~g~ 135 (423)
T PRK07218 68 DKNVTVTGRVLTIGERSIRYQGDDHVIYEGILADETGTISYTAWKDF------------GLSPGDTVTIGNAGVREWDGR 135 (423)
T ss_pred CceeEEEEEEEEecceeEecCCCceEEEEEEEECCCCeEEEEEECCC------------CCCCCCEEEEeccEeeccCCc
Confidence 35699999998883 223 26667778899999999988631 289999999998877777888
Q ss_pred eeEeeeeE
Q psy11418 163 LSIIPKKL 170 (553)
Q Consensus 163 ~~l~~~~i 170 (553)
++|.+.+-
T Consensus 136 ~el~ig~~ 143 (423)
T PRK07218 136 PELNIGES 143 (423)
T ss_pred eEEeccCc
Confidence 88887543
No 244
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=66.36 E-value=33 Score=27.76 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=33.6
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.|.|+|.++..+| +|+++- -+.+...+...... . ...+..|+.|.+.
T Consensus 7 ~v~g~V~si~d~G---~~v~~g--~~gv~Gfl~~~~~~-~------~~~~~~Gq~v~~~ 53 (74)
T cd05694 7 VLSGCVSSVEDHG---YILDIG--IPGTTGFLPKKDAG-N------FSKLKVGQLLLCV 53 (74)
T ss_pred EEEEEEEEEeCCE---EEEEeC--CCCcEEEEEHHHCC-c------ccccCCCCEEEEE
Confidence 4999999999999 799983 11256666665431 1 1568999998875
No 245
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.80 E-value=20 Score=41.02 Aligned_cols=79 Identities=20% Similarity=0.277 Sum_probs=57.5
Q ss_pred EEEEEEEEEee---ec------CCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE-eeccccc--
Q psy11418 92 TLSVAGRVHAI---RE------SGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT-GSPGKTK-- 159 (553)
Q Consensus 92 ~V~v~Gri~~~---R~------~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~-G~~~~t~-- 159 (553)
..+|.|||.++ |. .| ++.-++|.|.++.|++.+..+.. +. +...|..|+++.++ |.|...+
T Consensus 192 ~wtIkaRV~~Ks~ir~~~~~~geg-kvfsv~L~Degg~Irat~f~~~~---dk---f~~~l~eG~VY~Is~~~Vk~an~~ 264 (608)
T TIGR00617 192 KWTIKARVTNKSEIRTWSNARGEG-KLFNVELLDESGEIRATAFNEQA---DK---FYDIIQEGKVYYISKGSLKPANKQ 264 (608)
T ss_pred ceEEEEEEEeccccceecCCCCCc-eeeEEEEecCCCeEEEEECchHH---HH---HhhhcccCCEEEECceEEEEcccc
Confidence 48999999763 32 25 78889999998999999987643 23 34578999999997 4443221
Q ss_pred ----CCceeEeeeeEEEeccCC
Q psy11418 160 ----KGELSIIPKKLTLLSPCL 177 (553)
Q Consensus 160 ----~ge~~l~~~~i~il~~~~ 177 (553)
...++|.....+.+.+|.
T Consensus 265 y~~~~~~yei~f~~~T~I~~~~ 286 (608)
T TIGR00617 265 FTNLGNDYEMTLDRDTVIEECE 286 (608)
T ss_pred ccCCCCCEEEEECCCeEEEECC
Confidence 456888888777777664
No 246
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=65.29 E-value=31 Score=37.46 Aligned_cols=73 Identities=26% Similarity=0.257 Sum_probs=54.1
Q ss_pred cEEEEEEEEEee--ecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeee
Q psy11418 91 VTLSVAGRVHAI--RESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPK 168 (553)
Q Consensus 91 ~~V~v~Gri~~~--R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~ 168 (553)
..++|.|+|... ..-| +..|+.+.|+.+.|=++.-... ..|...+..|.+||.|.+.|.+.... |.++
T Consensus 267 ~~~~v~g~v~~~p~~ieG-ghv~v~i~d~~G~I~~~A~ept----k~fr~~a~~L~pGD~i~~~G~~~~~~-----~n~e 336 (421)
T COG1571 267 SKYRVVGRVEAEPRAIEG-GHVVVEITDGEGEIGAVAFEPT----KEFRELARKLIPGDEITVYGSVKPGT-----LNLE 336 (421)
T ss_pred cceEEEEEEecccEEeeC-CEEEEEecCCCceEEEEEeccc----ccchHHHHhcCCCCEEEEecCccccc-----eeEE
Confidence 347788887654 4457 7899999999998888877653 34566788999999999999887422 5556
Q ss_pred eEEEe
Q psy11418 169 KLTLL 173 (553)
Q Consensus 169 ~i~il 173 (553)
.++++
T Consensus 337 k~~v~ 341 (421)
T COG1571 337 KFQVL 341 (421)
T ss_pred EEEEE
Confidence 65554
No 247
>KOG1637|consensus
Probab=64.96 E-value=4.1 Score=44.38 Aligned_cols=106 Identities=18% Similarity=0.194 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHhhhCCeEEEecceeccc-----cCCC---CCcceeecc----------CCCCcceeeeeCHHHHHHH
Q psy11418 212 IVRAQIIAYVRRYLDSLGFLEVETPMMNMI-----AGGA---TAKPFVTHH----------NDLNMDLYMRIAPELYLKM 273 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-----~gga---~a~~F~t~~----------~~~~~~~~L~~Spql~lk~ 273 (553)
++.+.++..||.-...+||.||-||-|-.. .|-- .-..|.... |.-+..+-.+--+--|.+.
T Consensus 193 ~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~e~eke~~~LKPMNCPgHcLmf~~r~rS~reL 272 (560)
T KOG1637|consen 193 RIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKFEVEKEEFALKPMNCPGHCLMFAHRDRSYREL 272 (560)
T ss_pred hHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhhhceeeeechhhhccCccCCCccccccccCCccHhhC
Confidence 678889999999999999999999999311 1110 012343321 1112222222222222221
Q ss_pred HHHccCCcEEEEccccccCCCCC----CccCCcceeeeEeccCCHHHHHHHHHH
Q psy11418 274 LVVGGLDRVYEVGRQFRNEGIDL----THNPEFTTCEFYMAYADYNDLMHLTED 323 (553)
Q Consensus 274 l~~~g~~rVfei~~~FR~E~~~~----~H~~EFt~lE~e~a~~~~~~~m~~~e~ 323 (553)
--|.-.+|..-|||-+.+ +|+.+|.|=|.-. |.+.+.+-+.++.
T Consensus 273 -----PlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHI-FCt~~Qi~~Eik~ 320 (560)
T KOG1637|consen 273 -----PLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHI-FCTPDQVKEEIKG 320 (560)
T ss_pred -----CccccCcceeeeccccccccccceeeeecccCceE-EecCccHHHHHHH
Confidence 014556889999999875 7999999998887 4443333333333
No 248
>PF15490 Ten1_2: Telomere-capping, CST complex subunit
Probab=64.33 E-value=71 Score=28.64 Aligned_cols=80 Identities=14% Similarity=0.235 Sum_probs=52.5
Q ss_pred ccccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc-cCCce
Q psy11418 85 AQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT-KKGEL 163 (553)
Q Consensus 85 ~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t-~~ge~ 163 (553)
+....|..|++-||+.+.-..- .++=+.=...++.-++.++-+.. +.| ..+.|+...+-|.+... +.|+.
T Consensus 16 ~~~~~g~svR~~GrL~~yD~~~-~~a~l~~~~~~~~~~l~V~t~~l---~~~-----~~~~gslyq~iGEl~~~~~~~~~ 86 (118)
T PF15490_consen 16 GFVPEGKSVRTFGRLQSYDVAT-SRATLTAQHESDQHSLKVDTKLL---EPF-----QARVGSLYQFIGELEHQPQDGGI 86 (118)
T ss_pred ccccCCCeEEEEEEEEEEeccC-CEEEEEeeccCCCcEEEEEeeEc---ccc-----ccCCCCEEEEEEEEEEEcCCCcE
Confidence 3445788999999999997665 55433223333445556655543 222 24899999999999877 67777
Q ss_pred eEeeeeEEEe
Q psy11418 164 SIIPKKLTLL 173 (553)
Q Consensus 164 ~l~~~~i~il 173 (553)
.|.|.=.+++
T Consensus 87 ~L~ARV~r~V 96 (118)
T PF15490_consen 87 VLKARVLRCV 96 (118)
T ss_pred EEEEEEEEec
Confidence 7766544433
No 249
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=64.03 E-value=29 Score=27.10 Aligned_cols=52 Identities=10% Similarity=0.209 Sum_probs=35.7
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.+.|+|.++...| +|+.|-++ ++..+...... .+........+.+||.|.|.
T Consensus 3 ~~~g~V~~v~~~G---~~V~l~~~---~~gli~~s~l~-~~~~~~~~~~~~~G~~i~v~ 54 (70)
T cd05698 3 KTHGTIVKVKPNG---CIVSFYNN---VKGFLPKSELS-EAFIKDPEEHFRVGQVVKVK 54 (70)
T ss_pred EEEEEEEEEecCc---EEEEECCC---CEEEEEHHHcC-hhhcCCHHHcccCCCEEEEE
Confidence 3789999999888 79999543 67777765542 11111223458999999885
No 250
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=63.20 E-value=7.5 Score=42.47 Aligned_cols=27 Identities=19% Similarity=0.502 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhCCcEEeeCceee
Q psy11418 427 VRAQIIAYVRRYLDSLGFLEVETPMMN 453 (553)
Q Consensus 427 ~Rs~i~~~iR~f~~~~~F~EV~TPiL~ 453 (553)
-.+.+.+.||++|...||.||.||+|+
T Consensus 241 ~~~~Led~IRevfvg~GFqEV~TPtLt 267 (453)
T TIGR02367 241 YLGKLERDITKFFVDRGFLEIKSPILI 267 (453)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeec
Confidence 457889999999999999999999997
No 251
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=62.81 E-value=8.4 Score=37.80 Aligned_cols=31 Identities=10% Similarity=0.280 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 426 IVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 426 ~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
+++..|.+.+++.|...||.||.||.|....
T Consensus 3 ~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~ 33 (235)
T cd00670 3 ALWRALERFLDDRMAEYGYQEILFPFLAPTV 33 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCeEcCHH
Confidence 5788999999999999999999999999876
No 252
>PRK13732 single-stranded DNA-binding protein; Provisional
Probab=62.57 E-value=45 Score=31.96 Aligned_cols=79 Identities=15% Similarity=0.242 Sum_probs=48.3
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEEeC--------------CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 92 TLSVAGRVHA---IRE--SGTKLMFYDLRGE--------------GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 92 ~V~v~Gri~~---~R~--~g~kl~Fi~l~d~--------------~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.|+|.|||.+ +|. .|..++-+.|--+ +.-+-|++-.+. .+ ...+.|..||.|.|+
T Consensus 8 ~V~LiGrLg~DPElR~t~nG~~va~fslAvn~~~kd~~~Ge~~e~t~w~~Vv~wgk~----Ae--~v~~~L~KG~~V~Ve 81 (175)
T PRK13732 8 KVILVGRLGKDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRVVLFGKL----AE--VAGEYLRKGAQVYIE 81 (175)
T ss_pred EEEEEEEecCCCEEEEcCCCCEEEEEEEEEcCccccCCCCceecceeEEEEEEecHH----HH--HHHHhcCCCCEEEEE
Confidence 5889999987 453 3434444444311 123455555432 11 245679999999999
Q ss_pred eecccc---cCC----ceeEeee---eEEEeccC
Q psy11418 153 GSPGKT---KKG----ELSIIPK---KLTLLSPC 176 (553)
Q Consensus 153 G~~~~t---~~g----e~~l~~~---~i~il~~~ 176 (553)
|.+... +.| ..+|.|+ ++.+|++.
T Consensus 82 GrL~~r~ye~dG~kr~~~eIiv~~~g~~~fL~~~ 115 (175)
T PRK13732 82 GQLRTRSWEDNGITRYVTEILVKTTGTMQMLGRA 115 (175)
T ss_pred EEEEeeeEccCCeEEEEEEEEEeecCeEEEecCC
Confidence 988632 123 3677787 88888754
No 253
>PLN02734 glycyl-tRNA synthetase
Probab=62.26 E-value=2.8 Score=48.13 Aligned_cols=52 Identities=29% Similarity=0.256 Sum_probs=34.3
Q ss_pred Ccceeeee----CHHHHHHHHHH-cc--CC-cEEEEccccccCCCCC---CccCCcceeeeEe
Q psy11418 258 NMDLYMRI----APELYLKMLVV-GG--LD-RVYEVGRQFRNEGIDL---THNPEFTTCEFYM 309 (553)
Q Consensus 258 ~~~~~L~~----Spql~lk~l~~-~g--~~-rVfei~~~FR~E~~~~---~H~~EFt~lE~e~ 309 (553)
+...|||. ..=+--++|+- .+ +. -+-+||++||||=+-. -+.-||+|+|+|.
T Consensus 246 ~~~~YLRPETAQGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~ 308 (684)
T PLN02734 246 LSVGYMRPETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEH 308 (684)
T ss_pred CccceecccccchheeeHHHHHHhcCCCCCeeeeeccHhhhcccCcccceeeechhhhhhhhe
Confidence 56899993 22222333332 11 11 6899999999994433 3889999999997
No 254
>PRK07080 hypothetical protein; Validated
Probab=62.07 E-value=7.5 Score=40.54 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=36.1
Q ss_pred cEEEE-ccccccCCCC-CCccCCcceeeeEeccCCHHHHHHHHHHHHhcc
Q psy11418 281 RVYEV-GRQFRNEGID-LTHNPEFTTCEFYMAYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 281 rVfei-~~~FR~E~~~-~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~ 328 (553)
++|.+ |.|||+|++. .+++-||+|-|+-..+ +-+.+.+.-+..+...
T Consensus 153 ~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~iG-t~e~v~~~r~~w~e~~ 201 (317)
T PRK07080 153 RLVDVASYCFRHEPSLDPARMQLFRMREYVRIG-TPEQIVAFRQSWIERG 201 (317)
T ss_pred cEEEeeeeeeccCCCCCcHHHhheeeeEEEEec-CHHHHHHHHHHHHHHH
Confidence 67766 8899999985 4789999999998865 6667777766655544
No 255
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=61.72 E-value=64 Score=32.08 Aligned_cols=80 Identities=19% Similarity=0.138 Sum_probs=54.4
Q ss_pred cEEEEEEEEEe---eec--CCCceEEEEEEe-----CCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc--
Q psy11418 91 VTLSVAGRVHA---IRE--SGTKLMFYDLRG-----EGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT-- 158 (553)
Q Consensus 91 ~~V~v~Gri~~---~R~--~g~kl~Fi~l~d-----~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t-- 158 (553)
..|.+.|||.. +|. .|..++-+.|.- .+..+.|++-.+. ..+ ...|..||.|.|.|.+...
T Consensus 110 N~V~LiGrL~~DPelR~t~~G~~va~f~lAvnr~~~~td~i~~v~wg~~----Ae~---~~~l~KG~~V~V~GrL~sr~y 182 (219)
T PRK05813 110 NEIFLDGYICKEPVYRTTPFGREIADLLLAVNRPYNKSDYIPCIAWGRN----ARF---CKTLEVGDNIRVWGRVQSREY 182 (219)
T ss_pred cEEEEEEEccCCCeEEECCCCCEEEEEEEEEcCCCCCceEEEEEEEhHH----hHH---HhhCCCCCEEEEEEEEEecce
Confidence 46999999976 343 454566555552 2457888887653 233 3459999999999998632
Q ss_pred --cCC--------ceeEeeeeEEEeccCC
Q psy11418 159 --KKG--------ELSIIPKKLTLLSPCL 177 (553)
Q Consensus 159 --~~g--------e~~l~~~~i~il~~~~ 177 (553)
+.| ..+|.+.+++.|++..
T Consensus 183 ~~k~g~~~g~kr~~~eV~v~~i~~l~~~~ 211 (219)
T PRK05813 183 QKKLSEGEVVTKVAYEVSISKMEKVEKEE 211 (219)
T ss_pred EcCCCCccceEEEEEEEEEEEEEEcCChh
Confidence 222 3788899999887643
No 256
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=61.64 E-value=28 Score=40.64 Aligned_cols=109 Identities=17% Similarity=0.064 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCc-ceeeeeCHHHHHHHHHHccC------CcEEEEcc
Q psy11418 215 AQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNM-DLYMRIAPELYLKMLVVGGL------DRVYEVGR 287 (553)
Q Consensus 215 s~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~-~~~L~~Spql~lk~l~~~g~------~rVfei~~ 287 (553)
..+.+.+|+.|...||.||-|-.+.+.... ..++... .|-... --+||.|-=--|=..+.... -|+||||+
T Consensus 401 ~~~~~~ir~~L~~~Gf~Evitysf~s~~~~-~~~~i~l-~NPiS~e~s~lR~SLlpgLL~~~~~N~~r~~~~~rlFEiG~ 478 (704)
T CHL00192 401 YNTRDKIRSYLRNLGLTELIHYSLVKQESF-SKNEIKL-KNPLIKDYSTLRSSLLPGLIEAVQENLKQGNSTLEGFEIGH 478 (704)
T ss_pred HHHHHHHHHHHHhCCCceEecccccChhhc-CCCcEEE-eCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEeee
Confidence 344567899999999999999999654211 1112221 122222 23466553222111122222 27999999
Q ss_pred ccccCCCCCCccCCcceeeeEec--------------cCCHHHHHHHHHHHHhcc
Q psy11418 288 QFRNEGIDLTHNPEFTTCEFYMA--------------YADYNDLMHLTEDLISGR 328 (553)
Q Consensus 288 ~FR~E~~~~~H~~EFt~lE~e~a--------------~~~~~~~m~~~e~li~~~ 328 (553)
+|-..+.. ..|-.++=+-++ -.|+.|+...+|.++..+
T Consensus 479 Vf~~~~~~---~~e~~~la~~~~g~~~~~~~w~~~~~~~dF~d~Kg~le~ll~~l 530 (704)
T CHL00192 479 VFNLDSSS---IIEETELAGGIFGGIDIRSSWSEKAQSLNWFEAKGIIENFFQKL 530 (704)
T ss_pred eEcCCCcc---ccccceEEEEEECCCcCccccCCCCCccCHHHHHHHHHHHHHHC
Confidence 99432211 122222211111 237999999999999766
No 257
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=61.57 E-value=27 Score=41.28 Aligned_cols=109 Identities=25% Similarity=0.290 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhhCCeEEEecceeccccC----CCCCcceeeccCCCCcc-eeeeeCHHHHHHHHHH----ccCC--cEEE
Q psy11418 216 QIIAYVRRYLDSLGFLEVETPMMNMIAG----GATAKPFVTHHNDLNMD-LYMRIAPELYLKMLVV----GGLD--RVYE 284 (553)
Q Consensus 216 ~i~~~ir~fl~~~gF~EV~TPil~~~~g----ga~a~~F~t~~~~~~~~-~~L~~Spql~lk~l~~----~g~~--rVfe 284 (553)
...+.+|++|...||.||-|-.+++..- +....+... .|-...+ -+||.|-=--|=..+. .+.. |+||
T Consensus 491 ~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~~~~~~~~i~l-~NPis~e~~~lR~SLlp~LL~~~~~N~~~~~~~i~lFE 569 (791)
T PRK00629 491 RLLRRLRRALAALGYQEVITYSFVSPEDAKLFGLNPEPLLL-LNPISEELSVMRTSLLPGLLEAVAYNLNRGNKDVALFE 569 (791)
T ss_pred HHHHHHHHHHHHCCCcEEeccccCCHHHHHhcCCCCCeEEE-eCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEe
Confidence 3456789999999999999999964311 000011111 1222222 3466553222211111 2333 8999
Q ss_pred EccccccCCCCCCccCCcceeeeEecc------------CCHHHHHHHHHHHHhcc
Q psy11418 285 VGRQFRNEGIDLTHNPEFTTCEFYMAY------------ADYNDLMHLTEDLISGR 328 (553)
Q Consensus 285 i~~~FR~E~~~~~H~~EFt~lE~e~a~------------~~~~~~m~~~e~li~~~ 328 (553)
||++|.... ....|-+++-+-++. .|+.++...+|.++..+
T Consensus 570 iG~Vf~~~~---~~~~e~~~la~~~~g~~~~~~w~~~~~~df~~~Kg~le~ll~~l 622 (791)
T PRK00629 570 IGRVFLPDG---DLPREPEHLAGVLTGNRVEESWGGKRPVDFFDLKGDVEALLEAL 622 (791)
T ss_pred eeeeeCCCC---CCCcchhEEEEEEECCCccccccccCCCCHHHHHHHHHHHHHHc
Confidence 999996531 111244444333333 58999999999999766
No 258
>PRK06386 replication factor A; Reviewed
Probab=61.50 E-value=51 Score=35.25 Aligned_cols=73 Identities=8% Similarity=0.166 Sum_probs=51.1
Q ss_pred EEEEEEEEEeee------cCC-CceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 92 TLSVAGRVHAIR------ESG-TKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 92 ~V~v~Gri~~~R------~~g-~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
-|+|.|+|..+= +.| +.+.=+.|-|.+|+|.+++.. ..|..||+|.|.+-..+.-.|.++
T Consensus 119 ~v~V~akVle~~e~e~~~~g~~~~v~sg~lgDeTGrIr~TlW~-------------~~l~eGd~v~i~na~v~e~~G~~e 185 (358)
T PRK06386 119 YVSVIGKITGITKKEYDSDGTSKIVYQGYIEDDTARVRISSFG-------------KPLEDNRFVRIENARVSQYNGYIE 185 (358)
T ss_pred ceEEEEEEEEccCceEecCCCccEEEEEEEEcCCCeEEEEEcc-------------ccccCCCEEEEeeeEEEccCCeEE
Confidence 477888886541 111 244445566677777666543 247899999999988877789999
Q ss_pred EeeeeEEEeccCC
Q psy11418 165 IIPKKLTLLSPCL 177 (553)
Q Consensus 165 l~~~~i~il~~~~ 177 (553)
|.+.....+.+..
T Consensus 186 l~v~~~t~I~~~~ 198 (358)
T PRK06386 186 ISVGNKSVIKEVE 198 (358)
T ss_pred EEeCCeEEEEECC
Confidence 9998887776553
No 259
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=59.72 E-value=1.1e+02 Score=28.92 Aligned_cols=75 Identities=19% Similarity=0.205 Sum_probs=53.1
Q ss_pred cCCcEEEEEEEEE--eeecCCCc--eEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCce
Q psy11418 88 LENVTLSVAGRVH--AIRESGTK--LMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGEL 163 (553)
Q Consensus 88 ~~~~~V~v~Gri~--~~R~~g~k--l~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~ 163 (553)
..++.++|-|.|. |+...+.. +.| +|.|+...+.|....-. ++. ++-|.-|.|+|.+... |
T Consensus 55 ~~g~~iRvgG~V~~GSi~r~~~~l~v~F-~vtD~~~~v~V~Y~Gil---PDl-------FrEG~gVVveG~~~~~--g-- 119 (160)
T PRK13165 55 EVGQRLRVGGMVMPGSVQRDPNSLKVSF-TLYDAGGSVTVTYEGIL---PDL-------FREGQGIVAQGVLEEG--N-- 119 (160)
T ss_pred CCCCEEEEeeEEeCCcEEECCCCeEEEE-EEEcCCeEEEEEEcccC---Ccc-------ccCCCeEEEEEEECCC--C--
Confidence 3578999999999 88776533 455 77899989988877532 232 4779999999998632 2
Q ss_pred eEeeeeEEEeccCCCC
Q psy11418 164 SIIPKKLTLLSPCLHM 179 (553)
Q Consensus 164 ~l~~~~i~il~~~~~~ 179 (553)
.+.++ +||.||...
T Consensus 120 ~F~A~--~vLAKhdek 133 (160)
T PRK13165 120 HIEAK--EVLAKHDEN 133 (160)
T ss_pred eEEEE--EEEecCCCC
Confidence 33344 588899643
No 260
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=59.65 E-value=10 Score=39.20 Aligned_cols=63 Identities=19% Similarity=0.379 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-----CCcc---eeeeeecCCCCCcceeEEeChhHHHHHh
Q psy11418 421 IRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-----GGAT---AKPFVTHHNDLNMDLYMRIAPELYLKST 488 (553)
Q Consensus 421 ~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-----~ga~---~~~~~t~~~~~~~~~yL~~Spel~~k~l 488 (553)
+-.-.+.+..+...+++.|...||.||+||++.... +|.. ++.|... -| --+..-|++....+
T Consensus 6 ~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D~---~G--~~l~LR~D~T~~ia 76 (311)
T PF13393_consen 6 LPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLDR---SG--RVLALRPDLTVPIA 76 (311)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEECT---TS--SEEEE-SSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEEec---CC--cEeccCCCCcHHHH
Confidence 345678899999999999999999999999998764 2222 3444321 12 23556677777654
No 261
>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=59.17 E-value=35 Score=26.67 Aligned_cols=52 Identities=17% Similarity=0.269 Sum_probs=34.1
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.+.|.|..+...| +|++|.++ +..++...... .+.+......++.||.|.+.
T Consensus 3 ~v~g~V~~v~~~g---~~v~l~~~---~~g~i~~~~~~-~~~~~~~~~~~~~Gd~v~~~ 54 (73)
T cd05691 3 IVTGKVTEVDAKG---ATVKLGDG---VEGFLRAAELS-RDRVEDATERFKVGDEVEAK 54 (73)
T ss_pred EEEEEEEEEECCe---EEEEeCCC---CEEEEEHHHCC-CccccCHHHccCCCCEEEEE
Confidence 3689999998877 78999754 55666554331 11122234457999999885
No 262
>PRK06642 single-stranded DNA-binding protein; Provisional
Probab=57.72 E-value=1.2e+02 Score=28.33 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=47.1
Q ss_pred EEEEEEEEEe---eecC--CCceEEEEEE------e---C-----CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 92 TLSVAGRVHA---IRES--GTKLMFYDLR------G---E-----GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 92 ~V~v~Gri~~---~R~~--g~kl~Fi~l~------d---~-----~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.|.|.|||.+ +|.. |..++-+.|- | + +.-+.|++-.+. ... ...+.|..||.|.|.
T Consensus 7 ~V~LiGrLg~DPElr~t~~G~~v~~fslAv~~~~k~~~~G~~~~~T~w~~v~~~g~~---~Ae--~~~~~l~KG~~V~V~ 81 (152)
T PRK06642 7 KVILIGNVGRDPEIRTTGEGKKIINLSLATTETWKDRITSERKERTEWHRVVIFSEG---LVS--VVERYVTKGSKLYIE 81 (152)
T ss_pred EEEEEEEccCCceEEECCCCCEEEEEEEEeccccccccCCccccceeEEEEEEeChH---HHH--HHHHhCCCCCEEEEE
Confidence 5889999987 6643 4334433333 1 1 224666655431 112 245679999999999
Q ss_pred eecccc----cCC----ceeEeeeeE----EEecc
Q psy11418 153 GSPGKT----KKG----ELSIIPKKL----TLLSP 175 (553)
Q Consensus 153 G~~~~t----~~g----e~~l~~~~i----~il~~ 175 (553)
|.+... +.| ..+|.+.++ .+|++
T Consensus 82 GrL~~~~y~dkdG~~r~~~eVvv~~~~~~i~fl~~ 116 (152)
T PRK06642 82 GSLQTRKWNDNSGQEKYTTEVVLQNFNSQLILLDS 116 (152)
T ss_pred EEEEeCeeECCCCCEEEEEEEEEEecccceEeccC
Confidence 998632 233 356777765 56653
No 263
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=57.14 E-value=22 Score=28.23 Aligned_cols=54 Identities=22% Similarity=0.124 Sum_probs=34.9
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.+.|.|.++...| +|++|.+..+ +...+...... .+.+......+..||.|.|.
T Consensus 6 ~~~g~V~~v~~~g---~~v~l~~~~~-~~gll~~s~l~-~~~~~~~~~~~~~Gd~v~vk 59 (76)
T cd04452 6 LVVVTVKSIADMG---AYVSLLEYGN-IEGMILLSELS-RRRIRSIRKLVKVGRKEVVK 59 (76)
T ss_pred EEEEEEEEEEccE---EEEEEcCCCC-eEEEEEhHHcC-CcccCCHHHeeCCCCEEEEE
Confidence 4799999999888 7999976432 44555544331 11222234458999999885
No 264
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=56.48 E-value=11 Score=39.32 Aligned_cols=34 Identities=18% Similarity=0.341 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
...+.|..+...+++.|.++||.||+||+|....
T Consensus 6 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~ 39 (314)
T TIGR00443 6 EEAARKEEIERQLQDVFRSWGYQEIITPTLEYLD 39 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHH
Confidence 4467899999999999999999999999998864
No 265
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=56.30 E-value=12 Score=37.96 Aligned_cols=33 Identities=12% Similarity=0.200 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 424 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 424 ~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
-.+++..|.+.+++.+.+.||.||.||.|...+
T Consensus 31 g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~ 63 (261)
T cd00778 31 GYAIWENIQKILDKEIKETGHENVYFPLLIPES 63 (261)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHH
Confidence 457889999999999999999999999998764
No 266
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=55.97 E-value=69 Score=30.93 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=35.2
Q ss_pred EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc----cCC----ceeEeeeeEEEeccC
Q psy11418 120 KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT----KKG----ELSIIPKKLTLLSPC 176 (553)
Q Consensus 120 ~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t----~~g----e~~l~~~~i~il~~~ 176 (553)
-+.|++..+. .+ .+.+.|+.||.|.|+|.+... +.| .++|.|++|.+|+..
T Consensus 53 w~~V~~fGk~----AE--~v~~~LkKGs~V~VeGrL~~~~yeDkdG~kr~~~eVvA~~V~fL~sr 111 (182)
T PRK06958 53 WHRVAFFGRL----AE--IVGEYLKKGSSVYIEGRIRTRKWQGQDGQDRYSTEIVADQMQMLGGR 111 (182)
T ss_pred EEEEEEehHH----HH--HHHHHhCCCCEEEEEEEEEeCceECCCCcEEEEEEEEEeEEEECCCC
Confidence 5666665432 11 245679999999999998743 222 478999999998643
No 267
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=54.86 E-value=12 Score=41.38 Aligned_cols=32 Identities=6% Similarity=0.090 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHh--CCcEEeeCceeeccC
Q psy11418 425 FIVRAQIIAYVRRYLDS--LGFLEVETPMMNMIA 456 (553)
Q Consensus 425 l~~Rs~i~~~iR~f~~~--~~F~EV~TPiL~~~~ 456 (553)
.++|..+...+|+.+.. .||.||+||+|.+..
T Consensus 38 ~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~ 71 (456)
T PRK04173 38 VELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPE 71 (456)
T ss_pred HHHHHHHHHHHHHHHHhccCCEEEEeccccCCHH
Confidence 47899999999999987 799999999999876
No 268
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=54.49 E-value=73 Score=24.38 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=38.0
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEE-EEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLK-IQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~-iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.+.|.|..+...| ...++.+.-+++. |-+.+.... + ..-.|..||-|.+.
T Consensus 6 ~l~g~V~~ie~~g-~~~~v~~~~~~~~~l~a~it~~~------~--~~L~L~~G~~V~~~ 56 (64)
T PF03459_consen 6 QLPGTVESIENLG-SEVEVTLDLGGGETLTARITPES------A--EELGLKPGDEVYAS 56 (64)
T ss_dssp EEEEEEEEEEESS-SEEEEEEEETTSEEEEEEEEHHH------H--HHCT-STT-EEEEE
T ss_pred EEEEEEEEEEECC-CeEEEEEEECCCCEEEEEEcHHH------H--HHcCCCCCCEEEEE
Confidence 5899999999999 8999999988876 888887642 2 22358999999874
No 269
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=54.26 E-value=1.4e+02 Score=28.31 Aligned_cols=74 Identities=19% Similarity=0.252 Sum_probs=52.8
Q ss_pred CCcEEEEEEEEE--eeecCCC--ceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 89 ENVTLSVAGRVH--AIRESGT--KLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 89 ~~~~V~v~Gri~--~~R~~g~--kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
.++.++|-|.|. |+...+. .+.| +|.|+...+.|....-. ++ .++-|.-|.++|.+... | .
T Consensus 56 ~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~v~V~Y~Gil---PD-------lFrEG~gVVveG~~~~~--g--~ 120 (159)
T PRK13150 56 VGQRLRVGGMVMPGSVRRDPDSLKVNF-SLYDAEGSVTVSYEGIL---PD-------LFREGQGVVVQGTLEKG--N--H 120 (159)
T ss_pred CCCEEEEeeEEeCCcEEECCCCcEEEE-EEEcCCcEEEEEEeccC---Cc-------cccCCCeEEEEEEECCC--C--E
Confidence 578999999999 8876542 3554 78999989988877542 22 35789999999998632 2 2
Q ss_pred EeeeeEEEeccCCCC
Q psy11418 165 IIPKKLTLLSPCLHM 179 (553)
Q Consensus 165 l~~~~i~il~~~~~~ 179 (553)
+.++ +||.||...
T Consensus 121 F~A~--evLAKhdek 133 (159)
T PRK13150 121 VLAH--EVLAKHDEN 133 (159)
T ss_pred EEEe--EEEeCCCCC
Confidence 3343 588999643
No 270
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=54.09 E-value=14 Score=39.95 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 421 IRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 421 ~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
+-.-.+.+..+...+++.|...||-||+||++-...
T Consensus 17 lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e 52 (392)
T PRK12421 17 LPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLE 52 (392)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHH
Confidence 345567899999999999999999999999997654
No 271
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=53.71 E-value=14 Score=37.27 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHhCC--cEEeeCceeecc
Q psy11418 424 KFIVRAQIIAYVRRYLDSLG--FLEVETPMMNMI 455 (553)
Q Consensus 424 ~l~~Rs~i~~~iR~f~~~~~--F~EV~TPiL~~~ 455 (553)
-.+++..|.+.+|+.|...| |.||+||+|.+.
T Consensus 31 g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~ 64 (254)
T cd00774 31 GVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE 64 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH
Confidence 45789999999999999885 999999999866
No 272
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=53.39 E-value=13 Score=39.81 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 422 RHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 422 ~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
-.-.+.+..+...+++.|.+.||.||.||+|...+
T Consensus 11 p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~ 45 (397)
T TIGR00442 11 PEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTE 45 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHH
Confidence 34568899999999999999999999999997654
No 273
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=53.17 E-value=16 Score=36.95 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 424 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 424 ~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
-.+++..|.+.+++.|.+.||.||.||+|....
T Consensus 30 g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~ 62 (255)
T cd00779 30 GLRVLKKIENIIREEMNKIGAQEILMPILQPAE 62 (255)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHH
Confidence 457889999999999999999999999998865
No 274
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.88 E-value=23 Score=43.10 Aligned_cols=37 Identities=19% Similarity=0.442 Sum_probs=30.8
Q ss_pred CCcEEEEEEEEEeeecC-----CCceEEEEEEeCCEEEEEEE
Q psy11418 89 ENVTLSVAGRVHAIRES-----GTKLMFYDLRGEGLKIQVMA 125 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~-----g~kl~Fi~l~d~~~~iQvv~ 125 (553)
.+.+|+++|.|.++|.. |..++|+.|.|.+|.+.+++
T Consensus 980 ~g~~v~v~G~i~~~~~~~~tkkG~~maf~tleD~tg~ie~vi 1021 (1022)
T TIGR00594 980 NDSQVRTLGGLNSVKKKITTKNGKPMAFLQLEDETGSIEVVV 1021 (1022)
T ss_pred CCCEEEEEEEEEEEEEecccCCCCEEEEEEEEECCCcEEEEe
Confidence 45679999999877753 44599999999999999986
No 275
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=52.75 E-value=40 Score=39.98 Aligned_cols=106 Identities=20% Similarity=0.223 Sum_probs=58.3
Q ss_pred HHHHHHhhhCCeEEEecceeccccCCC----CC-c-ceeeccCCCCcc-eeeeeCH--HHHHHHHH--HccCC--cEEEE
Q psy11418 219 AYVRRYLDSLGFLEVETPMMNMIAGGA----TA-K-PFVTHHNDLNMD-LYMRIAP--ELYLKMLV--VGGLD--RVYEV 285 (553)
Q Consensus 219 ~~ir~fl~~~gF~EV~TPil~~~~gga----~a-~-~F~t~~~~~~~~-~~L~~Sp--ql~lk~l~--~~g~~--rVfei 285 (553)
+.+|++|...||.||-|-.+.+...-. .. . +... .|-...+ -+||.|- .|..-..- ..+.. |+|||
T Consensus 498 ~~~r~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~i~l-~NPis~e~s~lR~SLlpgLL~~~~~N~~~~~~~~~lFEi 576 (798)
T TIGR00472 498 RKLRTLLVGLGLNEVITYSLVSSEKAEKFNFPKLENLVEI-KNPLSNERSVLRTSLLPSLLEVLAYNQNRKNKDVKIFEI 576 (798)
T ss_pred HHHHHHHHHCCCcEEeccccCCHHHHHhhcCCCCCceEEE-eCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEee
Confidence 467999999999999999996431100 00 0 1111 1212111 2355542 32221110 12233 89999
Q ss_pred ccccccCCCCCCccCCcceeeeEecc-------------CCHHHHHHHHHHHHhcc
Q psy11418 286 GRQFRNEGIDLTHNPEFTTCEFYMAY-------------ADYNDLMHLTEDLISGR 328 (553)
Q Consensus 286 ~~~FR~E~~~~~H~~EFt~lE~e~a~-------------~~~~~~m~~~e~li~~~ 328 (553)
|++|...+.. ..|.+++-+-++. .|+.|+...+|.++..+
T Consensus 577 G~V~~~~~~~---~~e~~~La~~~~g~~~~~~~~~~~~~~df~d~Kg~le~ll~~l 629 (798)
T TIGR00472 577 GKVFAKDGLG---VKEQLRLAILISGEKNPSSWNHKEEKVDFYDLKGDVESLLELL 629 (798)
T ss_pred ecccCCCCCC---cchhhEEEEEEECCCCcccccCCCCcCChHHHHHHHHHHHHHc
Confidence 9999543211 2244444333332 48999999999999766
No 276
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=52.57 E-value=88 Score=38.92 Aligned_cols=81 Identities=16% Similarity=0.206 Sum_probs=55.8
Q ss_pred CcEEEEEEEEEeee----cCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc-CCcee
Q psy11418 90 NVTLSVAGRVHAIR----ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-KGELS 164 (553)
Q Consensus 90 ~~~V~v~Gri~~~R----~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~-~ge~~ 164 (553)
...|+|.|.|-.+- +.|+.+.-+.|.|.+..|-|..-.+.. +.. .....|..|++|.|+|.+.-.. .+++.
T Consensus 7 ~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~d~~~s~~~k~f~~~~---~~~-~~~~~~~~g~~~~~~g~~~~d~~~~~~~ 82 (1213)
T TIGR01405 7 ENRVKIEGYIFKIEIKELKSGRTLLKIKVTDYTDSLILKKFLKSE---EDP-EKFDGIKIGKWVRARGKIELDNFSRDLQ 82 (1213)
T ss_pred CCeEEEEEEEEEEEeEeccCCCEEEEEEEEcCCCCEEEEEecccc---cch-HHHhhcCCCcEEEEEEEEeccCCCCceE
Confidence 34689999997664 356566668899988766655443211 111 2346799999999999986543 67888
Q ss_pred EeeeeEEEec
Q psy11418 165 IIPKKLTLLS 174 (553)
Q Consensus 165 l~~~~i~il~ 174 (553)
+.+.++..+.
T Consensus 83 ~~~~~~~~~~ 92 (1213)
T TIGR01405 83 MIIKDIEEIP 92 (1213)
T ss_pred EEeeeeeecC
Confidence 8888876543
No 277
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=52.14 E-value=16 Score=37.58 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 422 RHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 422 ~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
-.-...+..+.+.+++.|...||-||+||++-...
T Consensus 16 p~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e 50 (281)
T PRK12293 16 GKSAKLKREIENVASEILYENGFEEIVTPFFSYHQ 50 (281)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehh
Confidence 45567889999999999999999999999997554
No 278
>PRK08582 hypothetical protein; Provisional
Probab=51.99 E-value=56 Score=30.01 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=40.2
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc-ccCCceeEeeeeE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK-TKKGELSIIPKKL 170 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~-t~~ge~~l~~~~i 170 (553)
.+.|.|..+...| +|+.|-++ +..++....+. ...+......+.+||.|.|. +.. ...|.+.|....+
T Consensus 8 iv~G~V~~I~~fG---~fV~L~~~---~~GlVhiSels-~~~v~~~~~~l~vGD~Vkvk--V~~id~~gkI~LSlk~~ 76 (139)
T PRK08582 8 KLQGKVTGITNFG---AFVELPEG---KTGLVHISEVA-DNYVKDINDHLKVGDEVEVK--VLNVEDDGKIGLSIKKA 76 (139)
T ss_pred EEEEEEEEEECCe---EEEEECCC---CEEEEEeeccC-cccccccccccCCCCEEEEE--EEEECCCCcEEEEEEec
Confidence 4899999999998 79999654 23333333221 11111223568999999885 221 1246666655443
No 279
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=51.84 E-value=17 Score=37.67 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 424 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 424 ~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
-.+++..+.+.+++.+.+.||.||.||+|....
T Consensus 29 g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~ 61 (298)
T cd00771 29 GAIIRNELEDFLRELQRKRGYQEVETPIIYNKE 61 (298)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeecCHH
Confidence 457889999999999999999999999998776
No 280
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=51.72 E-value=14 Score=39.76 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 421 IRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 421 ~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
+-.-.+.|..+...+++.|.+.||.||+||+|-...
T Consensus 13 lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e 48 (391)
T PRK12292 13 LPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLD 48 (391)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHH
Confidence 345667899999999999999999999999997543
No 281
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=51.34 E-value=87 Score=39.63 Aligned_cols=80 Identities=21% Similarity=0.332 Sum_probs=54.2
Q ss_pred CcEEEEEEEEEeee----cCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc-CCcee
Q psy11418 90 NVTLSVAGRVHAIR----ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-KGELS 164 (553)
Q Consensus 90 ~~~V~v~Gri~~~R----~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~-~ge~~ 164 (553)
+..|+|.|.|-.+- +.|+.+.=+.|.|.+..|-|..-.+.- +. .+....|..|++|.|+|.+...+ .+++.
T Consensus 236 ~~~v~i~G~if~~e~~~~k~~~~~~~~~~td~~~s~~~k~f~~~~---~~-~~~~~~~~~g~~v~~~g~~~~d~~~~~~~ 311 (1437)
T PRK00448 236 ERRVVVEGYVFKVEIKELKSGRHILTFKITDYTSSIIVKKFSRDK---ED-LKKFDEIKKGDWVKVRGSVQNDTFTRDLV 311 (1437)
T ss_pred CCeEEEEEEEEEEEEEeccCCCEEEEEEEEcCCCCEEEEEEecCc---ch-hHHHhcCCCCCEEEEEEEEeccCCCCceE
Confidence 34699999998873 345445557888987655444333211 11 13356799999999999987554 67888
Q ss_pred EeeeeEEEe
Q psy11418 165 IIPKKLTLL 173 (553)
Q Consensus 165 l~~~~i~il 173 (553)
+.+.++..+
T Consensus 312 ~~~~~~~~~ 320 (1437)
T PRK00448 312 MNAQDINEI 320 (1437)
T ss_pred EEeeeeeec
Confidence 888887654
No 282
>PRK07252 hypothetical protein; Provisional
Probab=50.32 E-value=56 Score=29.23 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=40.0
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc--cCCceeEeeee
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT--KKGELSIIPKK 169 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t--~~ge~~l~~~~ 169 (553)
.+.|.|..+...| +|++|..+ +...+..... +.+.+......+.+||.|.|. +... ..|.+.+....
T Consensus 6 iv~G~V~~V~~~G---~fVei~~~---~~GllhiseL-s~~~~~~~~~~~~vGD~V~Vk--I~~iD~~~~ri~lSlk~ 74 (120)
T PRK07252 6 KLKGTITGIKPYG---AFVALENG---TTGLIHISEI-KTGFIDNIHQLLKVGEEVLVQ--VVDFDEYTGKASLSLRT 74 (120)
T ss_pred EEEEEEEEEeCcE---EEEEECCC---CEEEEEHHHc-CCccccChhhccCCCCEEEEE--EEEEeCCCCEEEEEEee
Confidence 4799999999988 78998543 4445544332 112222223458999999885 2221 24555554433
No 283
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=50.27 E-value=16 Score=39.90 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 422 RHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 422 ~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
-.-...|..+...+++.|...||-||+||++-...
T Consensus 15 p~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e 49 (430)
T CHL00201 15 PDEINYWQFIHDKALTLLSLANYSEIRTPIFENSS 49 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHH
Confidence 34567899999999999999999999999998764
No 284
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=50.20 E-value=34 Score=26.76 Aligned_cols=52 Identities=21% Similarity=0.310 Sum_probs=33.7
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.+.|.|.++...| +|+.|.++ +-.++...... ...+....+.+..||.|.+.
T Consensus 3 ~v~g~V~~v~~~G---v~V~l~~~---v~g~i~~~~l~-~~~~~~~~~~~~~Gd~i~~~ 54 (69)
T cd05697 3 VVKGTIRKLRPSG---IFVKLSDH---IKGLVPPMHLA-DVRLKHPEKKFKPGLKVKCR 54 (69)
T ss_pred EEEEEEEEEeccE---EEEEecCC---cEEEEEHHHCC-CccccCHHHcCCCCCEEEEE
Confidence 4789999999888 78999653 55555543331 11121223468999998874
No 285
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=50.19 E-value=31 Score=26.29 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=33.3
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.+.|+|..+...| +|++|.++ +..++...... .+.+......+.+||.|.|.
T Consensus 3 ~~~g~V~~i~~~G---~fv~l~~~---~~g~~~~~~l~-~~~~~~~~~~~~~Gd~v~v~ 54 (68)
T cd05685 3 VLEGVVTNVTDFG---AFVDIGVK---QDGLIHISKMA-DRFVSHPSDVVSVGDIVEVK 54 (68)
T ss_pred EEEEEEEEEeccc---EEEEcCCC---CEEEEEHHHCC-CccccCHHHhcCCCCEEEEE
Confidence 4789999999888 78999654 45555544331 11111223347999999885
No 286
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=49.77 E-value=27 Score=40.44 Aligned_cols=112 Identities=21% Similarity=0.152 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhhhCCeEEEecceecccc-----CCCCCcceeeccCCCCcc-eeeeeCHHHHHHHHHHccC------C
Q psy11418 213 VRAQIIAYVRRYLDSLGFLEVETPMMNMIA-----GGATAKPFVTHHNDLNMD-LYMRIAPELYLKMLVVGGL------D 280 (553)
Q Consensus 213 ~rs~i~~~ir~fl~~~gF~EV~TPil~~~~-----gga~a~~F~t~~~~~~~~-~~L~~Spql~lk~l~~~g~------~ 280 (553)
..+...+.+|++|...||.||-|-.|++.. ++..-++-.. .|-...+ -.||.|---.|-..+.... -
T Consensus 352 ~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~~~~~~~l-~NPiS~e~s~mR~sLlp~LL~~~~~N~~r~~~~~ 430 (650)
T COG0072 352 PLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLENDEALEL-ANPISEEYSVLRTSLLPGLLEALSYNKNRKNPDV 430 (650)
T ss_pred hHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhccCCCcceEe-cCCcchhHHHHHHHHHHHHHHHHHHhhccCCCCe
Confidence 445567889999999999999999996421 1111111111 1111122 2366665444433333222 3
Q ss_pred cEEEEccccccCCCCC---Ccc---------CCcceeeeEeccCCHHHHHHHHHHHHhcc
Q psy11418 281 RVYEVGRQFRNEGIDL---THN---------PEFTTCEFYMAYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 281 rVfei~~~FR~E~~~~---~H~---------~EFt~lE~e~a~~~~~~~m~~~e~li~~~ 328 (553)
|+||||.+|-.++... .|. .+-|+-. .-.++.|+-..++.++..+
T Consensus 431 ~iFEiG~v~~~~~~~~~~~~~~~~l~~g~~~~~~w~~~---~~v~f~d~Kg~ve~ll~~l 487 (650)
T COG0072 431 RIFEIGDVFVKDEEAERETRHLAGLAAGLAGEESWQGK---RPVDFYDAKGDLEALLEAL 487 (650)
T ss_pred eEEEeeeeEecCCcccchhHHHHHHhhccccccccccC---CCcCHHHHHHHHHHHHHHh
Confidence 8999999998753321 111 2223222 2457899999999999888
No 287
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=49.68 E-value=20 Score=36.73 Aligned_cols=34 Identities=9% Similarity=0.223 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEeeCceeecc
Q psy11418 422 RHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI 455 (553)
Q Consensus 422 ~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~ 455 (553)
+..+..|..+.+.+++.|...||-||+||++-..
T Consensus 4 ~~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~ 37 (272)
T PRK12294 4 SEQLIALKESETAFLKYFNKADYELVDFSVIEKL 37 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhH
Confidence 4456678889999999999999999999999543
No 288
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ. RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.
Probab=48.89 E-value=23 Score=28.77 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=29.1
Q ss_pred hhcccCCccEEEEEcccccCCCCceeEEeeeEEEE
Q psy11418 353 DLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLL 387 (553)
Q Consensus 353 ~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl 387 (553)
....+..||.|.|.|.+.- +.|.+.+.++++++|
T Consensus 40 ~~~~l~~Gd~V~v~G~v~~-~~G~~ql~v~~i~~~ 73 (73)
T cd04487 40 AYPEVEVGDIVRVTGEVEP-RDGQLQIEVESLEVL 73 (73)
T ss_pred CcCCCCCCCEEEEEEEEec-CCeEEEEEEeeEEEC
Confidence 3456899999999999875 889999999999875
No 289
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo.
Probab=48.76 E-value=33 Score=26.32 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=32.9
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.+.|+|..+...| +|++|-++ +..++...... .+.+......+..||.|.|.
T Consensus 3 ~~~g~V~~v~~~G---~~v~l~~~---~~g~l~~~~l~-~~~~~~~~~~~~~Gd~v~v~ 54 (68)
T cd04472 3 IYEGKVVKIKDFG---AFVEILPG---KDGLVHISELS-DERVEKVEDVLKVGDEVKVK 54 (68)
T ss_pred EEEEEEEEEEEeE---EEEEeCCC---CEEEEEhHHcC-CccccCHHHccCCCCEEEEE
Confidence 4689999999988 79999764 44555443321 11111112457999999885
No 290
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=48.70 E-value=20 Score=36.50 Aligned_cols=32 Identities=9% Similarity=0.132 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 425 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 425 l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.+++..|.+.+++-+.+.||.||.||.|....
T Consensus 32 ~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~ 63 (264)
T cd00772 32 KAILDKIENVLDKMFKEHGAQNALFPFFILAS 63 (264)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCeeccHH
Confidence 46889999999999999999999999998865
No 291
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=48.35 E-value=58 Score=25.63 Aligned_cols=53 Identities=17% Similarity=0.374 Sum_probs=33.1
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.+.|+|.++...| +|++|.+. .+..++....... +........+++||.|.|.
T Consensus 5 ~v~g~V~~i~~~g---~~v~l~~~--~~~g~i~~~~l~~-~~~~~~~~~~~~Gd~v~v~ 57 (77)
T cd05708 5 KIDGTVRRVEDYG---VFIDIDGT--NVSGLCHKSEISD-NRVADASKLFRVGDKVRAK 57 (77)
T ss_pred EEEEEEEEEEcce---EEEEECCC--CeEEEEEHHHCCC-CccCCHhHeecCCCEEEEE
Confidence 4799999999887 78999752 2444444333211 1111123457999999875
No 292
>PRK07274 single-stranded DNA-binding protein; Provisional
Probab=48.35 E-value=1.3e+02 Score=27.20 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=28.0
Q ss_pred HhccCCCCcEEEEEeecccc---cCC----ceeEeeeeEEEec
Q psy11418 139 DLVKIKRGDIIGVTGSPGKT---KKG----ELSIIPKKLTLLS 174 (553)
Q Consensus 139 ~~~~l~~gd~V~v~G~~~~t---~~g----e~~l~~~~i~il~ 174 (553)
..+.|..||.|.|+|.+... +.| ..+|.+.++.+|.
T Consensus 61 v~~~l~KG~~V~V~Grl~~~~y~kdG~~~~~~eviv~~i~~l~ 103 (131)
T PRK07274 61 LASYASKGSLISIDGELRTRKYEKDGQTHYVTEVLCQSFQLLE 103 (131)
T ss_pred HHHHcCCCCEEEEEEEEEeccCccCCcEEEEEEEEEEEEEECc
Confidence 45679999999999987632 233 3688999999886
No 293
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=48.27 E-value=84 Score=24.69 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=34.0
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.+.|.|..+...| +|+.|..+ ++.++...... ++........+..||.|.+.
T Consensus 6 iv~g~V~~v~~~g---i~v~l~~~---~~g~v~~s~l~-~~~~~~~~~~~~~Gd~v~~~ 57 (73)
T cd05706 6 ILPGRVTKVNDRY---VLVQLGNK---VTGPSFITDAL-DDYSEALPYKFKKNDIVRAC 57 (73)
T ss_pred EEEEEEEEEeCCe---EEEEeCCC---cEEEEEhhhcc-CccccccccccCCCCEEEEE
Confidence 4789999998877 78998654 66777654431 11111123458999998874
No 294
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=47.38 E-value=17 Score=39.15 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 422 RHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 422 ~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
-.-.+.+..+...+|+.|.+.||.||.||+|...+
T Consensus 15 p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~ 49 (412)
T PRK00037 15 PEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTE 49 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHH
Confidence 34567888999999999999999999999996653
No 295
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=46.76 E-value=89 Score=24.16 Aligned_cols=50 Identities=20% Similarity=0.182 Sum_probs=34.9
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCE-EEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGL-KIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.+.|+|.++...| ..+-+.+.-+++ .+.+.+..+. . ..-.|..||-|.+.
T Consensus 8 ~l~g~I~~i~~~g-~~~~v~l~~~~~~~l~a~i~~~~------~--~~l~l~~G~~v~~~ 58 (69)
T TIGR00638 8 QLKGKVVAIEDGD-VNAEVDLLLGGGTKLTAVITLES------V--AELGLKPGKEVYAV 58 (69)
T ss_pred EEEEEEEEEEECC-CeEEEEEEECCCCEEEEEecHHH------H--hhCCCCCCCEEEEE
Confidence 5899999998888 566666665444 7777776542 1 22458999988873
No 296
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=46.70 E-value=23 Score=36.68 Aligned_cols=66 Identities=20% Similarity=0.295 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcc-eeeeeec-CCCCCcceeEEeChhHHHHHh
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGAT-AKPFVTH-HNDLNMDLYMRIAPELYLKST 488 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~-~~~~~t~-~~~~~~~~yL~~Spel~~k~l 488 (553)
...+++.++.+.+++.+.+.||.||.||.|.... .+.+ .-.+... ...-+.+++|.-..|..+=.+
T Consensus 50 ~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~~~~~~L~pt~e~~~~~l 119 (297)
T cd00770 50 DGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVEGEDLYLIATAEVPLAAL 119 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEecCCCEEEeecCCHHHHHH
Confidence 3568899999999999999999999999999887 4333 1111100 000135677777665555443
No 297
>PF12857 TOBE_3: TOBE-like domain; InterPro: IPR024765 The TOBE (transport-associated OB) domain [] always occurs as a dimer and it is found in ABC transporters immediately after the ATPase domain. This entry represents a TOBE-like domain, found in the C terminus of ATPase subunit CysA. CysA is part of the CysATWP ABC transporter complex, involved in sulphate/thiosulphate import [, ].
Probab=46.00 E-value=1.2e+02 Score=23.12 Aligned_cols=49 Identities=20% Similarity=0.292 Sum_probs=37.3
Q ss_pred EEEEEEEeeecCCCceEEEEEEeC--CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGE--GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~--~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.+.|.|..++..| ..+.++|... +..|.+-++... ....+..||.|.+.
T Consensus 6 ~l~a~V~~v~~~G-~~vRlEl~~~~~~~~iEvel~~~~---------~~l~l~~G~~V~l~ 56 (58)
T PF12857_consen 6 GLPARVRRVRPVG-PEVRLELKRLDDGEPIEVELPRER---------RQLGLQPGDRVYLR 56 (58)
T ss_pred cEeEEEEEEEecC-CeEEEEEEECCCCCEEEEEeCHhH---------HhcCCCCCCEEEEE
Confidence 5889999999999 8999999754 357888877642 12346779999874
No 298
>PRK06752 single-stranded DNA-binding protein; Validated
Probab=45.81 E-value=31 Score=30.23 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=29.0
Q ss_pred hhcccCCccEEEEEcccccCC----CC----ceeEEeeeEEEEecc
Q psy11418 353 DLVKIKRGDIIGVTGSPGKTK----KG----ELSIIPKKLTLLSPC 390 (553)
Q Consensus 353 ~~~~L~~gs~V~V~G~v~~~~----~g----~~El~~~~i~vl~~~ 390 (553)
..+.|..||.|.|+|.+.... .| ..||.++.+.+|++.
T Consensus 61 ~~~~l~KG~~V~V~G~l~~~~~~~~~G~~~~~~ei~a~~i~~l~~~ 106 (112)
T PRK06752 61 VTEYCTKGSLVGITGRIHTRNYEDDQGKRIYITEVVIESITFLERR 106 (112)
T ss_pred HHHhcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEECCCC
Confidence 345578999999999996542 22 488999999998754
No 299
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=45.80 E-value=25 Score=27.81 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEe
Q psy11418 426 IVRAQIIAYVRRYLDSLGFLEV 447 (553)
Q Consensus 426 ~~Rs~i~~~iR~f~~~~~F~EV 447 (553)
+.|.+|++.||+||...|=|+|
T Consensus 2 ~kre~i~~~iR~~fs~lG~I~v 23 (62)
T PF15513_consen 2 RKREEITAEIRQFFSQLGEIAV 23 (62)
T ss_pred cHHHHHHHHHHHHHHhcCcEEE
Confidence 4689999999999999996665
No 300
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=45.66 E-value=20 Score=39.94 Aligned_cols=48 Identities=21% Similarity=0.314 Sum_probs=35.4
Q ss_pred cEEEEccccccCCC-CCCccCCcceeeeEec--cCCHHHHHHHHHHHHhcc
Q psy11418 281 RVYEVGRQFRNEGI-DLTHNPEFTTCEFYMA--YADYNDLMHLTEDLISGR 328 (553)
Q Consensus 281 rVfei~~~FR~E~~-~~~H~~EFt~lE~e~a--~~~~~~~m~~~e~li~~~ 328 (553)
|+||||+|||.+.. +.+|+..+.+.....+ -.|+.|+...++.++..+
T Consensus 210 RLFEIGRVFr~d~~eE~t~La~llsGs~W~~~e~vDFfDlKGiLE~LL~~L 260 (529)
T PRK06253 210 KLFSIDRCFRREQREDASRLMTYHSASCVIADEDVTVDDGKAVAEGLLSQF 260 (529)
T ss_pred EEEEEeeEEecCCccchhheeEEEEccccccCCCCCHHHHHHHHHHHHHHc
Confidence 99999999988642 4567776666532221 238999999999999876
No 301
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=45.65 E-value=44 Score=26.81 Aligned_cols=53 Identities=9% Similarity=0.125 Sum_probs=35.6
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCH-HHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSE-EEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~-~~~~~~~~~l~~gd~V~v~ 152 (553)
.|.|.|.++-..| +|+.|.++ +...+....+... ....+..+.+..||.|.++
T Consensus 3 ~V~g~V~~i~~~g---~~V~l~~~---i~G~i~~~~ls~~~~~~~~~~~~~~vG~~v~~k 56 (73)
T cd05703 3 EVTGFVNNVSKEF---VWLTISPD---VKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAK 56 (73)
T ss_pred EEEEEEEEEeCCE---EEEEeCCC---cEEEEEHHHcCCccccccCHHHhCCCCCEEEEE
Confidence 4789999998877 79999664 6777765443111 0122345679999998875
No 302
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=45.16 E-value=36 Score=37.18 Aligned_cols=64 Identities=19% Similarity=0.314 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcc-eeeeeecCCCC---CcceeEEeChhHHHHHh
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGAT-AKPFVTHHNDL---NMDLYMRIAPELYLKST 488 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~-~~~~~t~~~~~---~~~~yL~~Spel~~k~l 488 (553)
...++..++++.+++.+.+.||.||.||.|.... .+++ +-.|.. +.| +.+.||.-..|-.+-.+
T Consensus 171 ~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~--~~y~i~~~~~~L~pTsE~~~~~~ 240 (418)
T TIGR00414 171 DGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEE--DIFKLEDTDLYLIPTAEVPLTNL 240 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccc--cceEecCCCEEEEeCCcHHHHHH
Confidence 4578899999999999999999999999999887 4333 211111 011 45678887766555443
No 303
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=44.60 E-value=21 Score=38.79 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 421 IRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 421 ~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
+-.-...+..+...+++.|...||.||.||+|...+
T Consensus 14 ~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~ 49 (423)
T PRK12420 14 LPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYE 49 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHH
Confidence 344567889999999999999999999999998753
No 304
>PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6.3.1.1 from EC catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. This family represents one of two non-homologous forms of aspartate--ammonia ligase found in Escherichia coli. This type is also found in Haemophilus influenzae, Treponema pallidum and Lactobacillus delbrueckii, but appears to have a very limited distribution. The fact that the protein from the H. influenzae is more than 70% identical to that from the spirochete T. pallidum, but less than 65% identical to that from the closely related E. coli, strongly suggests lateral transfer.; GO: 0004071 aspartate-ammonia ligase activity, 0006529 asparagine biosynthetic process, 0005737 cytoplasm; PDB: 11AS_B 12AS_A.
Probab=43.85 E-value=2.3e+02 Score=28.57 Aligned_cols=98 Identities=13% Similarity=0.266 Sum_probs=50.1
Q ss_pred HHHHHHHHHHh-----hhCCeEEEecceeccccCCC------CCcceeeccCCC-CcceeeeeCHHHHHHHHHH-ccC--
Q psy11418 215 AQIIAYVRRYL-----DSLGFLEVETPMMNMIAGGA------TAKPFVTHHNDL-NMDLYMRIAPELYLKMLVV-GGL-- 279 (553)
Q Consensus 215 s~i~~~ir~fl-----~~~gF~EV~TPil~~~~gga------~a~~F~t~~~~~-~~~~~L~~Spql~lk~l~~-~g~-- 279 (553)
...|..+.++| ...+.+.|..|++.....|- .-+|..-..... +..+-.-+|---|+.+.+. .||
T Consensus 7 q~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlNDnLnG~ErpVsF~~k~~~~~~~EIVhSLAKWKR~aL~~y~f~~ 86 (244)
T PF03590_consen 7 QKAIKFIKDTFERELSKALNLTRVSAPLFVEKGSGLNDNLNGVERPVSFDIKDIPDETAEIVHSLAKWKRMALKRYGFPP 86 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHC-EEE----SEEETTSS-S--TTST----EE--TTSTT--EEE-S--TTHHHHHHHHTT--T
T ss_pred HHHHHHHHHHHHHHHHHHhCceEecCCeEEecCCCCcCCCCCeEeeEEEEccCCCCceeeeehhHHHHHHHHHHHcCCCC
Confidence 44556666666 45699999999997543331 124543333334 5667777888888776543 245
Q ss_pred -CcEEEEccccc-cCC-CCCCccCCcceeeeEeccC
Q psy11418 280 -DRVYEVGRQFR-NEG-IDLTHNPEFTTCEFYMAYA 312 (553)
Q Consensus 280 -~rVfei~~~FR-~E~-~~~~H~~EFt~lE~e~a~~ 312 (553)
+.+|+=..+.| .|. .|..|.-=.-|-|||..-.
T Consensus 87 geGlyTdMnAiR~~de~ld~~HSiYVDQWDWEkvI~ 122 (244)
T PF03590_consen 87 GEGLYTDMNAIRPDDEELDNIHSIYVDQWDWEKVIS 122 (244)
T ss_dssp T-EEEEEEEEE-TT-SS--SS--SEEEEEEEEEE--
T ss_pred CceEeecCceeecchhccCcceEEEecccCHhhhcC
Confidence 48999999999 775 6889999999999998866
No 305
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=43.53 E-value=1.5e+02 Score=24.25 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=20.3
Q ss_pred ccCCCCcEEEEEeecccccCCceeEeeee-EEEe
Q psy11418 141 VKIKRGDIIGVTGSPGKTKKGELSIIPKK-LTLL 173 (553)
Q Consensus 141 ~~l~~gd~V~v~G~~~~t~~ge~~l~~~~-i~il 173 (553)
..+.+||.|.|+|++..- .|..+|.... ++++
T Consensus 43 ~~~~~Gd~V~vtG~v~ey-~g~tql~~~~~~~~~ 75 (78)
T cd04486 43 ADVAVGDLVRVTGTVTEY-YGLTQLTAVSAIEVL 75 (78)
T ss_pred CCCCCCCEEEEEEEEEee-CCeEEEccCCceEEe
Confidence 358999999999998742 2333444432 4443
No 306
>PLN02972 Histidyl-tRNA synthetase
Probab=43.44 E-value=22 Score=41.57 Aligned_cols=35 Identities=11% Similarity=0.369 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeecc
Q psy11418 421 IRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI 455 (553)
Q Consensus 421 ~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~ 455 (553)
+-.-...|..+...+++.|...||.||+||++-..
T Consensus 337 lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~ 371 (763)
T PLN02972 337 AKEQMAIREKAFSIITSVFKRHGATALDTPVFELR 371 (763)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccch
Confidence 34567889999999999999999999999999654
No 307
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=42.67 E-value=48 Score=27.59 Aligned_cols=49 Identities=22% Similarity=0.374 Sum_probs=32.5
Q ss_pred CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc---C-C----ceeEeeeeEEE
Q psy11418 118 GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK---K-G----ELSIIPKKLTL 172 (553)
Q Consensus 118 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~---~-g----e~~l~~~~i~i 172 (553)
+..++|.+..+.. + ...+.+..||.|.|+|.+.... . | .++|.+++|.+
T Consensus 43 ~~~~~v~~~g~~a---~---~~~~~~~kG~~V~v~G~l~~~~~~~~~g~~~~~~~i~~~~i~~ 99 (100)
T cd04496 43 TDWIRVVAFGKLA---E---NAAKYLKKGDLVYVEGRLRTRSWEDKDGQKRYGTEVVADRIEF 99 (100)
T ss_pred cEEEEEEEEhHHH---H---HHHHHhCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEEEEEE
Confidence 3467777766521 1 3456799999999999986432 1 2 36677777665
No 308
>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids. It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C ....
Probab=42.29 E-value=23 Score=29.93 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=22.2
Q ss_pred hcccCCccEEEEEcccccC----CCC----ceeEEeeeEEEE
Q psy11418 354 LVKIKRGDIIGVTGSPGKT----KKG----ELSIIPKKLTLL 387 (553)
Q Consensus 354 ~~~L~~gs~V~V~G~v~~~----~~g----~~El~~~~i~vl 387 (553)
.+.+..||.|.|+|.+... +.| .++|.|+++++|
T Consensus 63 ~~~l~kG~~V~V~G~l~~~~~~~~~G~~~~~~~i~a~~i~fl 104 (104)
T PF00436_consen 63 AEYLKKGDRVYVEGRLRTRTYEDKDGQKRYRVEIIADNIEFL 104 (104)
T ss_dssp HHH--TT-EEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEE-
T ss_pred ceEEcCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEeC
Confidence 3457899999999998532 223 488999988875
No 309
>PRK06863 single-stranded DNA-binding protein; Provisional
Probab=42.21 E-value=31 Score=32.89 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=30.1
Q ss_pred HhhcccCCccEEEEEcccccCC----CC----ceeEEeeeEEEEecc
Q psy11418 352 SDLVKIKRGDIIGVTGSPGKTK----KG----ELSIIPKKLTLLSPC 390 (553)
Q Consensus 352 ~~~~~L~~gs~V~V~G~v~~~~----~g----~~El~~~~i~vl~~~ 390 (553)
.+.+.|+.|+.|.|+|.+.... .| .+||.+++|++|...
T Consensus 65 ~v~~~LkKGs~V~VeGrL~~r~w~DkdG~~r~~~eI~a~~i~~L~~r 111 (168)
T PRK06863 65 VAGEYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLGGR 111 (168)
T ss_pred HHHHHCCCCCEEEEEEEEEeCCccCCCCCEEEEEEEEEeEEEECCCC
Confidence 3456689999999999996442 22 589999999998753
No 310
>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis.
Probab=42.14 E-value=59 Score=25.88 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=33.6
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.+.|.|..+...| +|+.| ++. .+..++...... ...+....+.+..||.|.|.
T Consensus 6 ~~~g~V~~i~~fG---~fv~l-~~~-~~eGlvh~sel~-~~~~~~~~~~~~~Gd~v~vk 58 (73)
T cd05686 6 IFKGEVASVTEYG---AFVKI-PGC-RKQGLVHKSHMS-SCRVDDPSEVVDVGEKVWVK 58 (73)
T ss_pred EEEEEEEEEEeee---EEEEE-CCC-CeEEEEEchhhC-CCcccCHhhEECCCCEEEEE
Confidence 4689999999998 79999 443 144555544331 12222233447899999885
No 311
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=42.10 E-value=25 Score=38.63 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 424 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 424 ~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
-.+++..|.+.+|+-+.+.||-||.||.|.+..
T Consensus 46 g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~ 78 (439)
T PRK12325 46 GLKVLKKIENIVREEQNRAGAIEILMPTIQPAD 78 (439)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHH
Confidence 367899999999999999999999999999874
No 312
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=42.07 E-value=80 Score=31.66 Aligned_cols=98 Identities=15% Similarity=0.215 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHcc----CCcEEEEccccc
Q psy11418 215 AQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG----LDRVYEVGRQFR 290 (553)
Q Consensus 215 s~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g----~~rVfei~~~FR 290 (553)
++|.+.+-+||.++|...|..--|.+.. |-.+.++.|.-...|-++.|- ..|+-...+|.|
T Consensus 2 ~eiR~~fl~FF~~kgH~~v~s~slvp~d---------------DptllFtnAGM~~Fkp~f~G~~~p~~~r~~~~QkCiR 66 (232)
T cd00673 2 SEIRETFLSFFEKKGHTRVPSSPVVPRD---------------DPTLLFTNAGMNQFKPIFLGEVPPPANRLVNSQKCIR 66 (232)
T ss_pred hHHHHHHHHHHHhCCCEEeCCCCcCCCC---------------CCchheeccchhhhhHHhcCCCCCCCCceeeeeecee
Confidence 3566788899999999998766554311 222344444444444444221 258888999999
Q ss_pred cCCC-----CCCccCCcceeeeEeccCCH--HHHHHHHHHHHhcc
Q psy11418 291 NEGI-----DLTHNPEFTTCEFYMAYADY--NDLMHLTEDLISGR 328 (553)
Q Consensus 291 ~E~~-----~~~H~~EFt~lE~e~a~~~~--~~~m~~~e~li~~~ 328 (553)
.-+. +.||+.=|.|| --.+|.|| ++.+..+-+++-..
T Consensus 67 ~~DienVG~t~rHhTfFEML-GNfSFgdYFK~eaI~~awe~LT~~ 110 (232)
T cd00673 67 AGDIDNVGKTGRHHTFFEML-GNFSFGDYFKEEAIAFAWELLTEV 110 (232)
T ss_pred cCChhhccccccchhhhhhh-cccchhhhhHHHHHHHHHHHHHhh
Confidence 6544 45899999999 45567786 78888888887653
No 313
>PRK09010 single-stranded DNA-binding protein; Provisional
Probab=41.99 E-value=1.5e+02 Score=28.58 Aligned_cols=51 Identities=12% Similarity=0.223 Sum_probs=32.5
Q ss_pred EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc----cCC----ceeEeee---eEEEeccC
Q psy11418 120 KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT----KKG----ELSIIPK---KLTLLSPC 176 (553)
Q Consensus 120 ~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t----~~g----e~~l~~~---~i~il~~~ 176 (553)
-+.|++-.+. .+ ...+.|+.||.|.|+|.+... +.| .++|.+. ++++|++.
T Consensus 55 w~~V~~fgk~----Ae--~~~~~L~KGs~V~VeGrL~~~~yedkdG~~r~~~eVvv~~~~~~~~l~~r 116 (177)
T PRK09010 55 WHRVVLFGKL----AE--VAGEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGR 116 (177)
T ss_pred EEEEEEehhH----HH--HHHHhcCCCCEEEEEEEEEeccccCCCCCEEEEEEEEEecCCcEEEccCC
Confidence 4566665532 12 245679999999999998633 223 3566665 67877644
No 314
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=41.94 E-value=28 Score=39.42 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 424 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 424 ~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
-.++|..+...+|+.+.+.||.||.||.|....
T Consensus 167 G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~e 199 (545)
T PRK14799 167 GQTIRNELIAFMREINDSMGYQEVYTSHVFKTD 199 (545)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCccchHH
Confidence 578999999999999999999999999987765
No 315
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=41.84 E-value=85 Score=23.75 Aligned_cols=52 Identities=23% Similarity=0.335 Sum_probs=32.4
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.+.|.|..+...| +|++|.++ .+.++....... +......+.+++||.|.|.
T Consensus 3 ~~~g~V~~i~~~g---~~v~i~~~---~~g~l~~~~l~~-~~~~~~~~~~~~Gd~v~v~ 54 (69)
T cd05692 3 VVEGTVTRLKPFG---AFVELGGG---ISGLVHISQIAH-KRVKDVKDVLKEGDKVKVK 54 (69)
T ss_pred EEEEEEEEEEeee---EEEEECCC---CEEEEEhHHcCC-cccCCHHHccCCCCEEEEE
Confidence 4789999999888 78888654 445555433211 1111112457999999875
No 316
>PLN02908 threonyl-tRNA synthetase
Probab=41.69 E-value=26 Score=40.72 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.-.+++..++..+|+.+.+.||.||.||.|....
T Consensus 319 ~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~ 352 (686)
T PLN02908 319 HGARIYNKLMDFIREQYWERGYDEVITPNIYNMD 352 (686)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCccccHH
Confidence 3578999999999999999999999999999876
No 317
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=41.66 E-value=2.2e+02 Score=28.38 Aligned_cols=79 Identities=16% Similarity=0.272 Sum_probs=52.4
Q ss_pred CcEEEEEEEEEe---eecCCCceEEEEEE-------eCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc-
Q psy11418 90 NVTLSVAGRVHA---IRESGTKLMFYDLR-------GEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT- 158 (553)
Q Consensus 90 ~~~V~v~Gri~~---~R~~g~kl~Fi~l~-------d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t- 158 (553)
...|.|.|+|.+ .|....+-.|.... +....|.|++..+.. +... +..|+.|.|.|.+..-
T Consensus 8 ~NkV~L~Grl~~d~e~~~~~~G~~~~~f~laV~R~s~~~D~i~v~v~~rla-------e~~~-l~kG~~v~VeGqlrsy~ 79 (219)
T PRK05813 8 NNKVYLEGKVVSELEFSHEMYGEGFYNFKLEVPRLSDSKDILPVTVSERLL-------AGMD-LKVGTLVIVEGQLRSYN 79 (219)
T ss_pred cCEEEEEEEEcCCceEEEEeCCeEEEEEEEEeeccCCCccEEEEEEEhhhh-------hhhc-ccCCCEEEEEEEEEEec
Confidence 346899999975 33322233444332 455689999987653 1223 9999999999998722
Q ss_pred -c-CC----ceeEeeeeEEEeccC
Q psy11418 159 -K-KG----ELSIIPKKLTLLSPC 176 (553)
Q Consensus 159 -~-~g----e~~l~~~~i~il~~~ 176 (553)
. .| -++|.|.+++.|+..
T Consensus 80 ~~~~G~~R~vl~V~a~~i~~l~~~ 103 (219)
T PRK05813 80 KFIDGKNRLILTVFARNIEYCDER 103 (219)
T ss_pred cCCCCcEEEEEEEEEEEEEEccCC
Confidence 1 23 378889999988764
No 318
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=41.06 E-value=87 Score=25.38 Aligned_cols=52 Identities=13% Similarity=0.046 Sum_probs=33.4
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.|.|.|..+...+ +++++... .+..+........ ...+....++.||.|.+.
T Consensus 9 iV~G~V~~v~~~~---~~V~i~~~---~~g~l~~~~~~~~-~~~~~~~~~~~GD~i~~~ 60 (82)
T cd04454 9 IVIGIVTEVNSRF---WKVDILSR---GTARLEDSSATEK-DKKEIRKSLQPGDLILAK 60 (82)
T ss_pred EEEEEEEEEcCCE---EEEEeCCC---ceEEeechhccCc-chHHHHhcCCCCCEEEEE
Confidence 4789999997665 67888543 5555555433111 122345668999998874
No 319
>COG3390 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.00 E-value=1.2e+02 Score=29.37 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=47.0
Q ss_pred cEEEEEEEEEeeecCC--CceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc
Q psy11418 91 VTLSVAGRVHAIRESG--TKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK 157 (553)
Q Consensus 91 ~~V~v~Gri~~~R~~g--~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~ 157 (553)
..|-|.|-+.+.-.-| ..+.=+.+.|.+|.+=++... ++.+ . .+.++.+..+|.|.|.|++..
T Consensus 46 nRifivGtltek~~i~ed~~~~R~rVvDpTGsF~Vyag~--yqPE-a-~a~l~~ve~~~~VaViGKi~~ 110 (196)
T COG3390 46 NRIFIVGTLTEKEGIGEDREYWRIRVVDPTGSFYVYAGQ--YQPE-A-KAFLEDVEVPDLVAVIGKIRT 110 (196)
T ss_pred eEEEEEEEEEeccCcCCcccEEEEEEecCCceEEEEcCC--CChH-H-HHHHHhccCCceEEEecccce
Confidence 4688999999988777 457778888999987775432 2222 2 246788999999999999863
No 320
>PF04057 Rep-A_N: Replication factor-A protein 1, N-terminal domain; InterPro: IPR007199 Replication factor-a protein 1 (RPA1) forms a multiprotein complex with RPA2 and RPA3 that binds single-stranded DNA and functions in the recognition of DNA damage for nucleotide excision repair. The complex binds to single-stranded DNA sequences participating in DNA replication in addition to those mediating transcriptional repression and activation, and stimulates the activity of cognate strand exchange protein Sep1. It cooperates with T-AG and DNA topoisomerase I to unwind template DNA containing the Simian Virus 40 origin of replication [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005634 nucleus; PDB: 1EWI_A 2B3G_A 2B29_A.
Probab=40.85 E-value=1.9e+02 Score=24.96 Aligned_cols=62 Identities=21% Similarity=0.243 Sum_probs=44.1
Q ss_pred ceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC-CceeEeeeeEEEec
Q psy11418 108 KLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK-GELSIIPKKLTLLS 174 (553)
Q Consensus 108 kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~-ge~~l~~~~i~il~ 174 (553)
+-.=+.|.||...+|.++.... .+.. ....|+.|++|.+.-....+-. +.--|.+.+++++.
T Consensus 38 ~RyR~~lSDG~~~~~amLatql----n~lv-~~g~l~~~siirl~~y~~n~v~~~k~iiiil~leVv~ 100 (101)
T PF04057_consen 38 DRYRLVLSDGVHSIQAMLATQL----NHLV-ESGELQKGSIIRLKQYTCNTVKNGKKIIIILDLEVVQ 100 (101)
T ss_dssp -EEEEEEESSSEEEEEEESGGG----HHHH-HTTSSSTT-EEEEEEEEEEESTTSSEEEEEEEEEEEE
T ss_pred ceEEEEEEChHHHHHHHhHHHh----HHHH-hcCCcccCCEEEEeEEEEeeccCCCEEEEEEeeEEEe
Confidence 5556889999999999987653 1221 2457999999999877665544 66678888888874
No 321
>PRK00036 primosomal replication protein N; Reviewed
Probab=40.84 E-value=62 Score=28.54 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=37.9
Q ss_pred EEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc--CCceeEeeeeEEEeccC
Q psy11418 119 LKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK--KGELSIIPKKLTLLSPC 176 (553)
Q Consensus 119 ~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~--~ge~~l~~~~i~il~~~ 176 (553)
..||+++... +......+..|+.|.|+|.+.++. ...+-++++.|+.+.+.
T Consensus 47 ~~i~ava~G~-------~a~~~~~l~~Gs~v~v~GFLa~~~~~~~~LVLHi~~Ie~i~~~ 99 (107)
T PRK00036 47 LTISAVALGD-------LALLLADTPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGS 99 (107)
T ss_pred EEEEEEEEhh-------HHHHhcccCCCCEEEEEEEEEECCCCCCcEEEEhHHeEEcccc
Confidence 4677777653 234556799999999999998643 44688899999888554
No 322
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=40.80 E-value=51 Score=26.88 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=35.3
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.+.|.|.++...| +|++|-++ ++.++...... .+.+......++.||.|.|.
T Consensus 17 i~~g~V~~v~~~G---~fv~l~~~---~~g~v~~~el~-~~~~~~~~~~~~~Gd~v~vk 68 (83)
T cd04461 17 VVHGYVRNITPYG---VFVEFLGG---LTGLAPKSYIS-DEFVTDPSFGFKKGQSVTAK 68 (83)
T ss_pred EEEEEEEEEeece---EEEEcCCC---CEEEEEHHHCC-cccccCHHHhcCCCCEEEEE
Confidence 4679999999988 79999643 56666654431 12222234568999999885
No 323
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=40.68 E-value=31 Score=39.62 Aligned_cols=33 Identities=30% Similarity=0.532 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 424 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 424 ~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
-.+++..+.+.+++.|...||.||.||+|....
T Consensus 269 ~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~ 301 (638)
T PRK00413 269 GWTIRRELERYIRRKLRKAGYQEVKTPQILDRE 301 (638)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHH
Confidence 457899999999999999999999999998776
No 324
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=40.67 E-value=27 Score=38.26 Aligned_cols=35 Identities=26% Similarity=0.527 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 422 RHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 422 ~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
-.-+..+..|...+|+-+.+-||.||.||++-...
T Consensus 15 p~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~te 49 (429)
T COG0124 15 PEDMALREYIESTIRKVFESYGFSEIRTPIFEYTE 49 (429)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCEeccCccccchh
Confidence 34568899999999999999999999999987665
No 325
>KOG2298|consensus
Probab=40.47 E-value=5.7 Score=43.35 Aligned_cols=61 Identities=26% Similarity=0.236 Sum_probs=37.7
Q ss_pred ceeeccC-CCCcceeeeeCH----HHHHHHHHHccCC----cEEEEccccccCCCCC---CccCCcceeeeEe
Q psy11418 249 PFVTHHN-DLNMDLYMRIAP----ELYLKMLVVGGLD----RVYEVGRQFRNEGIDL---THNPEFTTCEFYM 309 (553)
Q Consensus 249 ~F~t~~~-~~~~~~~L~~Sp----ql~lk~l~~~g~~----rVfei~~~FR~E~~~~---~H~~EFt~lE~e~ 309 (553)
.|.|..- ..+.+.|||.-. -+--++|+--.-+ -+-+||++||||=+.. -|-.||||.|+|-
T Consensus 170 MF~T~IGpsG~~kgyLRPETAQG~FlNFkrlle~N~~KlPFA~AqiG~~fRNEISpRsGLlRvrEF~maEIEH 242 (599)
T KOG2298|consen 170 MFETQIGPSGGLKGYLRPETAQGQFLNFKRLLEFNQGKLPFASAQIGKSFRNEISPRSGLLRVREFTMAEIEH 242 (599)
T ss_pred eccccccCCCCcccccCccccccccccHHHHHHhcCCCCcchHHHhchHhhhccCcccCceeEEEeehHHhhc
Confidence 3444332 345778888321 2223444322222 2357999999997765 4889999999995
No 326
>PLN02530 histidine-tRNA ligase
Probab=40.38 E-value=27 Score=38.80 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 422 RHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 422 ~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
-.-.+.|..+...+++.|...||-||+||+|-...
T Consensus 81 p~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~e 115 (487)
T PLN02530 81 PEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEE 115 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEeccccccchHH
Confidence 45567899999999999999999999999998754
No 327
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=40.12 E-value=78 Score=28.65 Aligned_cols=66 Identities=20% Similarity=0.352 Sum_probs=44.1
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCC-EEEEEEEecccCCCHHHHHH-HhccCCCCcEEEEEeecccccCCceeEeeee
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEG-LKIQVMANARMYQSEEEFAS-DLVKIKRGDIIGVTGSPGKTKKGELSIIPKK 169 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~-~~iQvv~~~~~~~~~~~~~~-~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~ 169 (553)
.+.|+|..|-..| +|+.|-.+. |-|-| +. . ...|.+ +...|..||-|.|. ++.....|.++|.+..
T Consensus 8 ~l~GkItgI~~yG---AFV~l~~g~tGLVHI--SE--I--a~~fVkdI~d~L~vG~eV~vK-Vl~ide~GKisLSIr~ 75 (129)
T COG1098 8 KLKGKITGITPYG---AFVELEGGKTGLVHI--SE--I--ADGFVKDIHDHLKVGQEVKVK-VLDIDENGKISLSIRK 75 (129)
T ss_pred eEEEEEEeeEecc---eEEEecCCCcceEEe--hH--h--hhhhHHhHHHHhcCCCEEEEE-EEeeccCCCcceehHH
Confidence 5899999999999 799999865 33322 21 1 234443 34568999999986 3333347777776644
No 328
>PRK08486 single-stranded DNA-binding protein; Provisional
Probab=39.64 E-value=31 Score=33.28 Aligned_cols=38 Identities=13% Similarity=0.230 Sum_probs=29.8
Q ss_pred hhcccCCccEEEEEcccccCC----CC----ceeEEeeeEEEEecc
Q psy11418 353 DLVKIKRGDIIGVTGSPGKTK----KG----ELSIIPKKLTLLSPC 390 (553)
Q Consensus 353 ~~~~L~~gs~V~V~G~v~~~~----~g----~~El~~~~i~vl~~~ 390 (553)
+.+.|+.|+.|.|+|.+.... .| .+||.|+.+.+|++.
T Consensus 63 ~~~~l~KG~~V~VeGrL~~~~y~dkdG~~r~~~eI~a~~v~~L~~~ 108 (182)
T PRK08486 63 ANQYLSKGSKVLIEGRLTFESWMDQNGQKRSKHTITAESMQMLDSK 108 (182)
T ss_pred HHHHcCCCCEEEEEEEEEeCcEECCCCcEEEEEEEEEeEEEECCCC
Confidence 345679999999999996432 22 599999999999864
No 329
>PRK08059 general stress protein 13; Validated
Probab=39.60 E-value=99 Score=27.57 Aligned_cols=67 Identities=22% Similarity=0.235 Sum_probs=39.9
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc--ccCCceeEeeee
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK--TKKGELSIIPKK 169 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~--t~~ge~~l~~~~ 169 (553)
.+.|.|..+...| +|++|.++ ++.++...... .+........+.+||.|.|. +.. ..+|.+.+....
T Consensus 10 iv~G~V~~i~~~G---~fV~i~~~---~~Gli~~sel~-~~~~~~~~~~~~vGD~I~vk--I~~id~~~~~i~lslk~ 78 (123)
T PRK08059 10 VVTGKVTGIQPYG---AFVALDEE---TQGLVHISEIT-HGFVKDIHDFLSVGDEVKVK--VLSVDEEKGKISLSIRA 78 (123)
T ss_pred EEEEEEEEEecce---EEEEECCC---CEEEEEHHHCC-cccccCHHHcCCCCCEEEEE--EEEEECCCCeEEEEEEE
Confidence 5799999999988 78999654 44555443321 11111123457999999985 322 224555554433
No 330
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=38.76 E-value=32 Score=38.96 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.-.+++..+.+.+++.+.+.||.||.||+|....
T Consensus 204 ~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~ 237 (575)
T PRK12305 204 KGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSD 237 (575)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHH
Confidence 3568899999999999999999999999999886
No 331
>PRK06341 single-stranded DNA-binding protein; Provisional
Probab=38.75 E-value=2.8e+02 Score=26.40 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=45.1
Q ss_pred EEEEEEEEEe---eecC--CCceEEEEEEeC--------------CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 92 TLSVAGRVHA---IRES--GTKLMFYDLRGE--------------GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 92 ~V~v~Gri~~---~R~~--g~kl~Fi~l~d~--------------~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.|+|.|||.+ +|.. |++++-+.|--. +.-+.|++-.+. ..+ ...+.|..||.|.|+
T Consensus 7 ~V~LiGrLg~DPElR~t~sG~~v~~fsVAvn~~~kd~~~Ge~~e~T~w~~Vv~fg~~---~Ae--~~~~~LkKG~~V~Ve 81 (166)
T PRK06341 7 KVILIGNLGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHRVVIFNEG---LCK--VAEQYLKKGAKVYIE 81 (166)
T ss_pred EEEEEEEecCCCEEEEcCCCCEEEEEEEEEccceecCCCCcccccceEEEEEEeChH---HHH--HHHHhcCCCCEEEEE
Confidence 5888888887 5643 333433333311 123556654421 111 234679999999999
Q ss_pred eecccc----cCC----ceeEeeee----EEEeccC
Q psy11418 153 GSPGKT----KKG----ELSIIPKK----LTLLSPC 176 (553)
Q Consensus 153 G~~~~t----~~g----e~~l~~~~----i~il~~~ 176 (553)
|.+... +.| .++|.+.+ +++|.+.
T Consensus 82 GrL~~r~w~dkdG~~r~~~eIiv~~~~~~l~~l~~~ 117 (166)
T PRK06341 82 GQLQTRKWTDQSGVERYSTEVVLQGFNSTLTMLDGR 117 (166)
T ss_pred EEEEeCcEECCCCCEEEEEEEEEEecccceEEcccC
Confidence 998632 233 35666654 3566533
No 332
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=38.41 E-value=59 Score=25.37 Aligned_cols=52 Identities=15% Similarity=0.260 Sum_probs=32.4
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.|.|.|.++...| +|++|-.+ ...++...... ..........+..||.|.+.
T Consensus 3 iv~g~V~~i~~~~---~~v~l~~~---~~g~l~~~e~~-~~~~~~~~~~~~~Gd~i~~~ 54 (70)
T cd05687 3 IVKGTVVSVDDDE---VLVDIGYK---SEGIIPISEFS-DDPIENGEDEVKVGDEVEVY 54 (70)
T ss_pred EEEEEEEEEeCCE---EEEEeCCC---ceEEEEHHHhC-ccccCCHhHcCCCCCEEEEE
Confidence 3789999998776 78999432 46666654331 11001122458999998875
No 333
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=38.21 E-value=2.7e+02 Score=26.24 Aligned_cols=73 Identities=14% Similarity=0.217 Sum_probs=52.1
Q ss_pred CCcEEEEEEEEE--eeecCCC--ceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 89 ENVTLSVAGRVH--AIRESGT--KLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 89 ~~~~V~v~Gri~--~~R~~g~--kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
.++.++|-|.|. |+.+.+. .+.| .+.|+...+.|....-. ++ ..+-|.-|-++|.+. .| .
T Consensus 50 ~~~~~RlGG~V~~GSv~r~~~~~~v~F-~vtD~~~~v~V~Y~Gil---PD-------lFrEGqgVVaeG~~~---~g--~ 113 (155)
T PRK13159 50 GYQQFRLGGMVKAGSIQRAADSLKVSF-TVIDKNAATQVEYTGIL---PD-------LFRDNQSVIANGRMQ---GG--R 113 (155)
T ss_pred cCCeEEEccEEecCcEEEcCCCcEEEE-EEEcCCcEEEEEEccCC---Cc-------cccCCCeEEEEEEEc---CC--E
Confidence 457899999998 8877663 3565 67799889988876532 22 247799999999986 23 3
Q ss_pred EeeeeEEEeccCCCC
Q psy11418 165 IIPKKLTLLSPCLHM 179 (553)
Q Consensus 165 l~~~~i~il~~~~~~ 179 (553)
.+++ +||.||...
T Consensus 114 F~A~--~vLAKHde~ 126 (155)
T PRK13159 114 FVAN--EVLAKHDET 126 (155)
T ss_pred EEEe--EEEecCCCc
Confidence 4444 588999653
No 334
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=37.90 E-value=37 Score=32.78 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=30.4
Q ss_pred HhhcccCCccEEEEEcccccCC--------CCceeEEeeeEEEEecc
Q psy11418 352 SDLVKIKRGDIIGVTGSPGKTK--------KGELSIIPKKLTLLSPC 390 (553)
Q Consensus 352 ~~~~~L~~gs~V~V~G~v~~~~--------~g~~El~~~~i~vl~~~ 390 (553)
.+.+.|+.|+.|.|+|.+.... ...+||.|++|++|...
T Consensus 65 ~v~~~LkKGs~V~VeGrL~~~~yeDkdG~kr~~~eVvA~~V~fL~sr 111 (182)
T PRK06958 65 IVGEYLKKGSSVYIEGRIRTRKWQGQDGQDRYSTEIVADQMQMLGGR 111 (182)
T ss_pred HHHHHhCCCCEEEEEEEEEeCceECCCCcEEEEEEEEEeEEEECCCC
Confidence 3456679999999999996543 22589999999999854
No 335
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=37.54 E-value=92 Score=25.09 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=33.2
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCH--HHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSE--EEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~--~~~~~~~~~l~~gd~V~v~ 152 (553)
.|.|.|.++...| +|++|..+ +...+........ .+.....+.++.||.|.++
T Consensus 6 ~V~g~V~~i~~~G---~fV~l~~~---v~G~v~~~~ls~~~~~~~~~~~~~~~~G~~v~~k 60 (74)
T cd05705 6 LLRGYVSSVTKQG---VFFRLSSS---IVGRVLFQNVTKYFVSDPSLYNKYLPEGKLLTAK 60 (74)
T ss_pred EEEEEEEEEeCCc---EEEEeCCC---CEEEEEHHHccCccccChhhHhcccCCCCEEEEE
Confidence 5899999999888 89999653 4444443222100 0111234678999998874
No 336
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=37.50 E-value=31 Score=37.04 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 429 AQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 429 s~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
..+...|++.|...||.||+||++-...
T Consensus 8 ~~i~~~i~~~f~~~Gy~~I~tP~lE~~e 35 (373)
T PRK12295 8 AAAAEALLASFEAAGAVRVDPPILQPAE 35 (373)
T ss_pred HHHHHHHHHHHHHcCCEEeeCCccccHH
Confidence 4788899999999999999999997654
No 337
>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart
Probab=37.21 E-value=42 Score=27.96 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=24.7
Q ss_pred hhcccCCccEEEEEcccccCC---C-----CceeEEeeeEEE
Q psy11418 353 DLVKIKRGDIIGVTGSPGKTK---K-----GELSIIPKKLTL 386 (553)
Q Consensus 353 ~~~~L~~gs~V~V~G~v~~~~---~-----g~~El~~~~i~v 386 (553)
.++.+..||.|.|+|.+.... . ..+++.++++.+
T Consensus 58 ~~~~~~kG~~V~v~G~l~~~~~~~~~g~~~~~~~i~~~~i~~ 99 (100)
T cd04496 58 AAKYLKKGDLVYVEGRLRTRSWEDKDGQKRYGTEVVADRIEF 99 (100)
T ss_pred HHHHhCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEEEEEE
Confidence 345678999999999996543 1 247788877765
No 338
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=36.94 E-value=32 Score=33.88 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCcEEeeCceeecc
Q psy11418 430 QIIAYVRRYLDSLGFLEVETPMMNMI 455 (553)
Q Consensus 430 ~i~~~iR~f~~~~~F~EV~TPiL~~~ 455 (553)
.+.+.+|++|...||.||.|+.++..
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~ 30 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETD 30 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCccccc
Confidence 45677899999999999999999876
No 339
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=36.75 E-value=37 Score=38.55 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 424 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 424 ~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
-++++..|.+.+|+.|.+.||.||.||+|....
T Consensus 46 g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~ 78 (565)
T PRK09194 46 GLRVLRKIENIVREEMNKIGAQEVLMPALQPAE 78 (565)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECcccCcHH
Confidence 467899999999999999999999999999776
No 340
>PRK05807 hypothetical protein; Provisional
Probab=36.35 E-value=1.4e+02 Score=27.21 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=42.1
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc-cCCceeEeeeeE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT-KKGELSIIPKKL 170 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t-~~ge~~l~~~~i 170 (553)
.+.|.|..+...| +|++| ++ .+.++....+. ..........+.+||.|.|. +... ..|.++|....+
T Consensus 8 vv~G~Vt~i~~~G---afV~L-~~---~~Glvhiseis-~~~v~~~~~~~kvGd~V~Vk--V~~id~~gkI~LSlk~~ 75 (136)
T PRK05807 8 ILEGTVVNITNFG---AFVEV-EG---KTGLVHISEVA-DTYVKDIREHLKEQDKVKVK--VISIDDNGKISLSIKQA 75 (136)
T ss_pred EEEEEEEEEECCe---EEEEE-CC---EEEEEEhhhcc-cccccCccccCCCCCEEEEE--EEEECCCCcEEEEEEec
Confidence 5899999999988 79999 43 36666554431 11111123458999999875 2221 257777766554
No 341
>PRK06751 single-stranded DNA-binding protein; Provisional
Probab=36.23 E-value=41 Score=32.18 Aligned_cols=39 Identities=21% Similarity=0.440 Sum_probs=30.0
Q ss_pred HHhhcccCCccEEEEEcccccCC----CC----ceeEEeeeEEEEec
Q psy11418 351 ASDLVKIKRGDIIGVTGSPGKTK----KG----ELSIIPKKLTLLSP 389 (553)
Q Consensus 351 ~~~~~~L~~gs~V~V~G~v~~~~----~g----~~El~~~~i~vl~~ 389 (553)
..+.+.|+.|+.|.|+|.+.... .| .+||.|+.+++|.+
T Consensus 59 e~~~~~l~KG~~V~VeGrL~~r~yedkdG~~~~~~eVva~~i~~l~~ 105 (173)
T PRK06751 59 ENVANYLKKGSLAGVDGRLQTRNYEGQDGKRVYVTEVLAESVQFLEP 105 (173)
T ss_pred HHHHHHcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEeCcC
Confidence 33456689999999999996543 23 58999999998874
No 342
>PLN02678 seryl-tRNA synthetase
Probab=36.08 E-value=37 Score=37.43 Aligned_cols=34 Identities=15% Similarity=0.347 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
...+++.++++.+++++..+||.||.||.|....
T Consensus 172 ~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~ 205 (448)
T PLN02678 172 AGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKD 205 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECcccccHH
Confidence 4478999999999999999999999999998877
No 343
>PRK07772 single-stranded DNA-binding protein; Provisional
Probab=35.92 E-value=2.7e+02 Score=26.93 Aligned_cols=75 Identities=19% Similarity=0.298 Sum_probs=0.0
Q ss_pred CcEEEEEEEEEe-----eecCCCceEEEEEEeC---------------CEEEEEEEecccCCCHHHHHHHhccCCCCcEE
Q psy11418 90 NVTLSVAGRVHA-----IRESGTKLMFYDLRGE---------------GLKIQVMANARMYQSEEEFASDLVKIKRGDII 149 (553)
Q Consensus 90 ~~~V~v~Gri~~-----~R~~g~kl~Fi~l~d~---------------~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V 149 (553)
...|+|.|+|.. .-..|..++=+.|.-. +..+.|++-.+.. ....+.|..||.|
T Consensus 4 ~~~VtLiGrL~~DPElR~t~sG~~va~FrVAv~~r~~~~~~g~~~d~~t~fi~V~~Wg~~A------e~va~~L~KGd~V 77 (186)
T PRK07772 4 DTTITVVGNLTADPELRFTPSGAAVANFTVASTPRTFDRQTNEWKDGEALFLRCSIWRQAA------ENVAESLTKGMRV 77 (186)
T ss_pred cCEEEEEEEeCCCCeEEEcCCCCEEEEEEEEecCcceecCCCcEeccCceEEEEEEecHHH------HHHHHhcCCCCEE
Q ss_pred EEEeecc----cccCCc----eeEeeeeE
Q psy11418 150 GVTGSPG----KTKKGE----LSIIPKKL 170 (553)
Q Consensus 150 ~v~G~~~----~t~~ge----~~l~~~~i 170 (553)
.|+|.+. ..+.|+ ++|.|++|
T Consensus 78 ~V~GrL~~r~wedkdG~~rt~~eV~a~~V 106 (186)
T PRK07772 78 IVTGRLKQRSYETREGEKRTVVELEVDEI 106 (186)
T ss_pred EEEEEEEcCceECCCCCEEEEEEEEEEEc
No 344
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=35.68 E-value=62 Score=35.41 Aligned_cols=64 Identities=19% Similarity=0.233 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHH-hCCcEEeeCceeeccC--CCcc-eeeeeecCCCC---CcceeEEeChhHHHHHh
Q psy11418 423 HKFIVRAQIIAYVRRYLD-SLGFLEVETPMMNMIA--GGAT-AKPFVTHHNDL---NMDLYMRIAPELYLKST 488 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~-~~~F~EV~TPiL~~~~--~ga~-~~~~~t~~~~~---~~~~yL~~Spel~~k~l 488 (553)
...++..++++.+++.+. +.||.||.||.|.... .+.+ +-.|.- +-| +.+.||.-..|..+=.+
T Consensus 168 ~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~--~ly~i~~~~~~L~pTsE~~l~~l 238 (425)
T PRK05431 168 DGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEE--DLYKIEDDDLYLIPTAEVPLTNL 238 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchh--hceEecCCCEEEEeCCcHHHHHH
Confidence 456788999999999998 9999999999999876 4433 211110 011 45788887776655443
No 345
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=33.92 E-value=39 Score=38.13 Aligned_cols=33 Identities=30% Similarity=0.500 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 424 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 424 ~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
-.+++..+...+|+.+...||.||.||+|....
T Consensus 199 g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~ 231 (563)
T TIGR00418 199 GATIRNLLEDFVRQKQIKYGYMEVETPIMYDLE 231 (563)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHH
Confidence 456889999999999999999999999998776
No 346
>cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=33.75 E-value=60 Score=25.06 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=31.4
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.+.|+|.++...| +|+.|.++ +...+...............+.+.+||.|.|.
T Consensus 3 ~~~g~V~~i~~~G---~fv~l~~~---~~Glv~~~~l~~~~~~~~~~~~~~~G~~v~v~ 55 (69)
T cd05690 3 VVSGKIKSITDFG---IFVGLDGG---IDGLVHISDISWTQRVRHPSEIYKKGQEVEAV 55 (69)
T ss_pred EEEEEEEEEEeee---EEEEeCCC---CEEEEEHHHCCCccccCChhhEECCCCEEEEE
Confidence 4789999999998 79999754 34444433221000000112346889988875
No 347
>PRK07459 single-stranded DNA-binding protein; Provisional
Probab=33.63 E-value=70 Score=28.60 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=29.9
Q ss_pred HhhcccCCccEEEEEcccccCC----C-C----ceeEEeeeEEEEecc
Q psy11418 352 SDLVKIKRGDIIGVTGSPGKTK----K-G----ELSIIPKKLTLLSPC 390 (553)
Q Consensus 352 ~~~~~L~~gs~V~V~G~v~~~~----~-g----~~El~~~~i~vl~~~ 390 (553)
...+.|..|+.|.|+|.+.... . | ..||.++++++|.+.
T Consensus 57 ~~~~~l~KG~~V~V~G~l~~~~~~d~d~G~~r~~~ei~a~~i~~L~~k 104 (121)
T PRK07459 57 VAADYVKKGSLIGITGSLKFDRWTDRNTGEDRSKPVIRVDRLELLGSK 104 (121)
T ss_pred HHHHHcCCCCEEEEEEEEEecceEcCCCCeEEEEEEEEEeEEEECcCC
Confidence 3455689999999999986432 2 3 489999999999753
No 348
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=33.19 E-value=43 Score=38.06 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 424 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 424 ~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
-++++.+|.+.+|+.|...||.||.||+|.+..
T Consensus 46 g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~e 78 (568)
T TIGR00409 46 GLRVLKKVENIVREEMNKDGAIEVLLPALQPAE 78 (568)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHH
Confidence 467899999999999999999999999999865
No 349
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=32.09 E-value=1.2e+02 Score=31.04 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=36.1
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.|.|.|..+...| +|++|.+.. .++.++...... ...+......++.||.|.|.
T Consensus 11 iV~G~V~~I~~~G---~fV~L~e~~-gieGlI~iSEls-~~~i~~i~~~~kvGd~V~vk 64 (262)
T PRK03987 11 LVVGTVKEVKDFG---AFVTLDEYP-GKEGFIHISEVA-SGWVKNIRDHVKEGQKVVCK 64 (262)
T ss_pred EEEEEEEEEECCE---EEEEECCCC-CcEEEEEHHHcC-cccccCHHHhCCCCCEEEEE
Confidence 4789999999988 799997642 266676654331 11121223468999999885
No 350
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE). The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis.
Probab=32.05 E-value=54 Score=25.81 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=28.1
Q ss_pred HHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEe
Q psy11418 350 FASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLS 388 (553)
Q Consensus 350 ~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~ 388 (553)
+......+..|..|.|.|.+... .+..++.++++..+.
T Consensus 41 ~~~~~~~l~~g~~v~v~G~v~~~-~~~~~l~~~~i~~~~ 78 (84)
T cd04485 41 YEKYRDLLKEDALLLVEGKVERR-DGGLRLIAERIEDLE 78 (84)
T ss_pred HHHHHHHhcCCCEEEEEEEEEec-CCceEEEeeccccHH
Confidence 33445678899999999999664 367888888775543
No 351
>PRK07275 single-stranded DNA-binding protein; Provisional
Probab=31.89 E-value=55 Score=30.97 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=29.2
Q ss_pred hhcccCCccEEEEEcccccCC----CC----ceeEEeeeEEEEecc
Q psy11418 353 DLVKIKRGDIIGVTGSPGKTK----KG----ELSIIPKKLTLLSPC 390 (553)
Q Consensus 353 ~~~~L~~gs~V~V~G~v~~~~----~g----~~El~~~~i~vl~~~ 390 (553)
+.+.|..|+.|.|+|.+.... .| ..||.|+++++|.+.
T Consensus 61 ~~~~l~KG~~V~VeGrl~~r~y~dkdG~k~~~~evva~~i~~l~~~ 106 (162)
T PRK07275 61 LANWAKKGALIGVTGRIQTRNYENQQGQRVYVTEVVADNFQMLESR 106 (162)
T ss_pred HHHHcCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEeEEEECCCC
Confidence 345678999999999996432 23 489999999998753
No 352
>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.
Probab=31.68 E-value=65 Score=23.79 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=30.2
Q ss_pred EEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 95 VAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 95 v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
+.|.|..+...| +|+++.++ ++.++...... ...+......+..||.|.++
T Consensus 1 v~g~V~~v~~~g---~~v~l~~~---~~g~~~~~~~~-~~~~~~~~~~~~~G~~v~~~ 51 (65)
T cd00164 1 VTGKVVSITKFG---VFVELEDG---VEGLVHISELS-DKFVKDPSEVFKVGDEVEVK 51 (65)
T ss_pred CEEEEEEEEeee---EEEEecCC---CEEEEEHHHCC-CccccCHhhEeCCCCEEEEE
Confidence 368888888666 67777633 45565544331 11111123458999998874
No 353
>cd04480 RPA1_DBD_A_like RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change.
Probab=31.68 E-value=2.1e+02 Score=23.50 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=31.6
Q ss_pred EEEEeCCE-EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 112 YDLRGEGL-KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 112 i~l~d~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
+.|.|..| .||+.+.++.. + .+...|..|.+..+.+.-.....+...
T Consensus 23 miL~De~G~~I~a~i~~~~~---~---~f~~~L~eg~vy~is~f~v~~~~~~y~ 70 (86)
T cd04480 23 MVLVDEKGNRIHATIPKRLA---A---KFRPLLKEGKWYTISNFEVAPNTGSYR 70 (86)
T ss_pred EEEEcCCCCEEEEEECHHHH---H---hhhhhceeCCEEEEeeEEEEcCCCccc
Confidence 55777776 99999987642 2 345678999999998654444333333
No 354
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=31.63 E-value=1.1e+02 Score=24.02 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=31.8
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHH-HHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEE-EFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~-~~~~~~~~l~~gd~V~v~ 152 (553)
.|.|.|.++...| +|+.|-++ ++..+......... ........+..||.|.++
T Consensus 3 iV~g~V~~i~~~g---i~v~l~~~---i~g~i~~~~i~~~~~~~~~~~~~~~~Gd~i~~k 56 (70)
T cd05702 3 LVKAKVKSVKPTQ---LNVQLADN---VHGRIHVSEVFDEWPDGKNPLSKFKIGQKIKAR 56 (70)
T ss_pred EEEEEEEEEECCc---EEEEeCCC---cEEEEEHHHhccccccccChhHhCCCCCEEEEE
Confidence 4789999998877 78888543 55555543321000 011123457899998874
No 355
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.96 E-value=40 Score=38.42 Aligned_cols=60 Identities=27% Similarity=0.404 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeCh--hHHHHHh
Q psy11418 425 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAP--ELYLKST 488 (553)
Q Consensus 425 l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Sp--el~~k~l 488 (553)
..+|+.+.+.+|.-..+.||.||.||.|....-... .-|-..|..+.|+..+. +|.+|-|
T Consensus 220 ~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~----SGH~~~y~e~mf~~~~~~~~~~lKpm 281 (589)
T COG0441 220 ATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWEL----SGHWDNYKEDMFLTESDDREYALKPM 281 (589)
T ss_pred ccHHHHHHHHHHHHHHhcCceEecCCeeeecccchh----ccchhhccccceeeccCChhheeeec
Confidence 478999999999999999999999999986651111 11222467777877775 4444433
No 356
>KOG1894|consensus
Probab=30.89 E-value=78 Score=33.30 Aligned_cols=84 Identities=19% Similarity=0.191 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccccC----CCCCcceeecc-CCCCc---ceeeeeCHHHHHHHHHHccCC-
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAG----GATAKPFVTHH-NDLNM---DLYMRIAPELYLKMLVVGGLD- 280 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~g----ga~a~~F~t~~-~~~~~---~~~L~~Spql~lk~l~~~g~~- 280 (553)
.+.-+..--.+.++.+...+ |+.||.|+..++ |+++.-|.++. .++|. ++.|.||+.+.++..-+ ||+
T Consensus 102 ~l~~~~~~k~a~~el~r~kd--e~ntp~l~qr~s~s~~~~~~n~qsIy~~~~~D~~~~~laL~i~~i~~k~~krv-~f~d 178 (412)
T KOG1894|consen 102 HLEEADRPKYALQELFRLKD--ESNTPVLQQRLSASAFGAIANIQSIYNQGFYDQEDVVLALPISKIFFKDLKRV-GFDD 178 (412)
T ss_pred hcchhhhhhHHHHHHHHHhh--ccCChHHhhcccccchhhcccceeeccCCccCCCCccccccHhhhhhhhhhhh-cCCc
Confidence 33444444456666666666 999999975443 45555565532 24454 89999999999554433 453
Q ss_pred ------cEEE---EccccccCCCCC
Q psy11418 281 ------RVYE---VGRQFRNEGIDL 296 (553)
Q Consensus 281 ------rVfe---i~~~FR~E~~~~ 296 (553)
.|++ .++.|=||.-|.
T Consensus 179 ~a~e~~~v~s~~tl~~l~~ne~dd~ 203 (412)
T KOG1894|consen 179 NAPEQLEVVSGRTLSNLFYNETDDV 203 (412)
T ss_pred cchhhheeeccccccccccCcchhh
Confidence 5665 678888887653
No 357
>PRK08763 single-stranded DNA-binding protein; Provisional
Probab=30.25 E-value=62 Score=30.70 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=29.7
Q ss_pred hhcccCCccEEEEEcccccCC----CC----ceeEEeeeEEEEecc
Q psy11418 353 DLVKIKRGDIIGVTGSPGKTK----KG----ELSIIPKKLTLLSPC 390 (553)
Q Consensus 353 ~~~~L~~gs~V~V~G~v~~~~----~g----~~El~~~~i~vl~~~ 390 (553)
+.+.|..|+.|.|+|.+.... .| .+||.++++.+|...
T Consensus 66 v~~~L~KGs~V~VeGrL~~~~y~dkdG~kr~~~eIva~~i~~L~~~ 111 (164)
T PRK08763 66 AGEYLRKGSQCYIEGSIRYDKFTGQDGQERYVTEIVADEMQMLGGR 111 (164)
T ss_pred HHHhcCCCCEEEEEEEEEeceeECCCCCEEEEEEEEEeEEEECCCC
Confidence 445689999999999985532 23 589999999998854
No 358
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]
Probab=29.81 E-value=1.6e+02 Score=36.33 Aligned_cols=64 Identities=22% Similarity=0.369 Sum_probs=47.3
Q ss_pred EEEEEEEEEeeec-----CCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCC
Q psy11418 92 TLSVAGRVHAIRE-----SGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKG 161 (553)
Q Consensus 92 ~V~v~Gri~~~R~-----~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~g 161 (553)
.+.+.|=|..+|. .|++++|+.|.|.++.+-+++..+. |......+--+..+.|+|.+.....+
T Consensus 978 ~~~~~~~i~~vr~~~tk~~G~~~~f~tl~D~~g~~e~v~f~~~------~~~~~~~l~~~~~~~v~g~v~~~~~~ 1046 (1139)
T COG0587 978 RVVLAGGIVAVRQRPTKAKGNKMAFLTLEDETGILEVVVFPSE------YERYRRLLLEGRLLIVKGKVQRREDG 1046 (1139)
T ss_pred eeEEEEEEEEEEEeeccCCCCEEEEEEEecCCCcEEEEEcHHH------HHHHHHHhccCcEEEEEEEEEecccc
Confidence 3778888888773 3445999999999998888887543 33444556777999999999874433
No 359
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=29.73 E-value=50 Score=36.65 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC----CCcc-------eeeeee-cCCCCCcceeEEeChhH
Q psy11418 424 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGAT-------AKPFVT-HHNDLNMDLYMRIAPEL 483 (553)
Q Consensus 424 ~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~----~ga~-------~~~~~t-~~~~~~~~~yL~~Spel 483 (553)
-++++..|.+.+++.|...||.||.||.|.+.+ ++.. ++.+.. .....+.+++|+-..|-
T Consensus 43 g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~ 114 (477)
T PRK08661 43 GYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSET 114 (477)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcH
Confidence 468899999999999999999999999998775 2332 333321 11123567888877543
No 360
>PRK02801 primosomal replication protein N; Provisional
Probab=29.56 E-value=93 Score=26.86 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=27.5
Q ss_pred HHHhhcccCCccEEEEEccccc--CCCC--ceeEEeeeEEEE
Q psy11418 350 FASDLVKIKRGDIIGVTGSPGK--TKKG--ELSIIPKKLTLL 387 (553)
Q Consensus 350 ~~~~~~~L~~gs~V~V~G~v~~--~~~g--~~El~~~~i~vl 387 (553)
.+...+.+..|+.|.|+|.+.. ++.| .+.|+++.++.+
T Consensus 59 Ae~~~~~l~kGs~v~V~G~L~~~~~~~g~~~~~v~~~~i~~l 100 (101)
T PRK02801 59 FQAITQSITVGSKITVQGFISCHQGRNGLSKLVLHAEQIELI 100 (101)
T ss_pred HHHHHhhcCCCCEEEEEEEEEEeECCCCCEEEEEEEEEEEEC
Confidence 3445567999999999999975 3333 366888888765
No 361
>PRK05733 single-stranded DNA-binding protein; Provisional
Probab=29.53 E-value=3e+02 Score=26.32 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=0.0
Q ss_pred EEEEEEEEEee---ecCCCceEEEEEE----------------eCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 92 TLSVAGRVHAI---RESGTKLMFYDLR----------------GEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 92 ~V~v~Gri~~~---R~~g~kl~Fi~l~----------------d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.|+|.|||.+- |...++..++.++ +.+.-+-|++-.+.. ....+.|..|+.|.|+
T Consensus 7 kV~LiGrlg~DPElr~t~nG~~va~fsVAv~~~~k~~~~Ge~~e~T~w~~Vv~fgk~A------e~v~~~l~KGs~V~Ve 80 (172)
T PRK05733 7 KVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVA------EIAGEYLRKGSQVYIE 80 (172)
T ss_pred EEEEEEEecCCCEEEECCCCCEEEEEEEEEcCccccCCCCcccccceEEEEEEehHHH------HHHHHHhCCCCEEEEE
Q ss_pred eeccccc-------CCceeEeee---eEEEecc
Q psy11418 153 GSPGKTK-------KGELSIIPK---KLTLLSP 175 (553)
Q Consensus 153 G~~~~t~-------~ge~~l~~~---~i~il~~ 175 (553)
|.+.... .-.++|.|. .+.+|+.
T Consensus 81 GrLr~~~y~kdG~~r~~~eVvvd~~g~v~~L~~ 113 (172)
T PRK05733 81 GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGG 113 (172)
T ss_pred EEEEeCcEecCCEEEEEEEEEEeecCeEEECcC
No 362
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=29.03 E-value=2.7e+02 Score=24.78 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=37.8
Q ss_pred CcEEEEEEEEEeeecCC-CceEEE-EE----Ee-----CCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecc
Q psy11418 90 NVTLSVAGRVHAIRESG-TKLMFY-DL----RG-----EGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPG 156 (553)
Q Consensus 90 ~~~V~v~Gri~~~R~~g-~kl~Fi-~l----~d-----~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~ 156 (553)
++++++.|.|.+..... ...-|. .+ .. ..++++++.+++.. ..+..||.|.++|++.
T Consensus 75 ~~~~~v~g~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~l~~Gd~i~~~g~l~ 142 (176)
T PF13567_consen 75 GKEVTVQGTVESVPQIDGRGQRFTLRVERVLAGGNWIPVSGKILLYLPKDSQ----------PRLQPGDRIRVRGKLK 142 (176)
T ss_pred CceEEEEEEEcccccccCceEEEEEEEEEeeccccccccceeeEEEeccccc----------cccCCCCEEEEEEEEe
Confidence 67899999998886554 232232 21 11 12578887776532 1589999999999875
No 363
>cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=28.98 E-value=1.6e+02 Score=25.33 Aligned_cols=51 Identities=12% Similarity=0.158 Sum_probs=32.7
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHH--------------------HhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFAS--------------------DLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~--------------------~~~~l~~gd~V~v~ 152 (553)
.|.|+|.++...| +|+.|-++ +..++..... .+.|.. ....+.+||+|.++
T Consensus 6 vV~G~V~~v~~~g---l~v~L~~g---~~G~v~~sei--s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~vGd~V~~k 76 (100)
T cd05693 6 LVLGQVKEITKLD---LVISLPNG---LTGYVPITNI--SDAYTERLEELDEESEEEDDEEELPDLEDLFSVGQLVRCK 76 (100)
T ss_pred EEEEEEEEEcCCC---EEEECCCC---cEEEEEHHHh--hHHHHHHHHHhhhhccccccccccCCHHHhccCCCEEEEE
Confidence 5899999999887 78888654 4444444332 112211 23457999998875
No 364
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=28.76 E-value=1.4e+02 Score=36.74 Aligned_cols=77 Identities=17% Similarity=0.273 Sum_probs=55.9
Q ss_pred EEEEEEEEEeee----cCCCceEEEEEEeCCE--EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc-CCcee
Q psy11418 92 TLSVAGRVHAIR----ESGTKLMFYDLRGEGL--KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-KGELS 164 (553)
Q Consensus 92 ~V~v~Gri~~~R----~~g~kl~Fi~l~d~~~--~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~-~ge~~ 164 (553)
.|+|.|-|-.+- .+|+.+.=+.+.|.+. .+|.....+. +. +....|..|++|.|+|.+.... ++++.
T Consensus 241 ~v~v~G~IF~~e~~~~ksGr~l~~i~vTD~t~Sl~~k~f~~~~e---d~---~~~~~ik~g~wvk~~g~v~~d~f~~~l~ 314 (1444)
T COG2176 241 RVKVEGYIFKIEIKELKSGRTLLNIKVTDYTSSLILKKFLRDEE---DE---KKFDGIKKGMWVKARGNVQLDTFTRDLT 314 (1444)
T ss_pred ceEEEEEEEEEeeeecccCcEEEEEEEecCchheeehhhccccc---cH---HHHhhcccCcEEEEEEEEEecccccceE
Confidence 489999998764 5666777788888875 4555544321 11 3467899999999999998654 77888
Q ss_pred EeeeeEEEec
Q psy11418 165 IIPKKLTLLS 174 (553)
Q Consensus 165 l~~~~i~il~ 174 (553)
+.+.+|.-+.
T Consensus 315 m~i~~I~ei~ 324 (1444)
T COG2176 315 MIINDINEIE 324 (1444)
T ss_pred EEhhhhhhhh
Confidence 8888876554
No 365
>PRK07274 single-stranded DNA-binding protein; Provisional
Probab=28.66 E-value=74 Score=28.82 Aligned_cols=37 Identities=19% Similarity=0.333 Sum_probs=28.4
Q ss_pred hhcccCCccEEEEEcccccCC---CC----ceeEEeeeEEEEec
Q psy11418 353 DLVKIKRGDIIGVTGSPGKTK---KG----ELSIIPKKLTLLSP 389 (553)
Q Consensus 353 ~~~~L~~gs~V~V~G~v~~~~---~g----~~El~~~~i~vl~~ 389 (553)
+.+.|..|+.|.|+|.+.... .| ..||.++++.+|..
T Consensus 61 v~~~l~KG~~V~V~Grl~~~~y~kdG~~~~~~eviv~~i~~l~~ 104 (131)
T PRK07274 61 LASYASKGSLISIDGELRTRKYEKDGQTHYVTEVLCQSFQLLES 104 (131)
T ss_pred HHHHcCCCCEEEEEEEEEeccCccCCcEEEEEEEEEEEEEECcC
Confidence 445678999999999985432 22 48999999999863
No 366
>PRK06293 single-stranded DNA-binding protein; Provisional
Probab=28.37 E-value=73 Score=30.15 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=29.0
Q ss_pred hhcccCCccEEEEEcccccCC----CC----ceeEEeeeEEEEecc
Q psy11418 353 DLVKIKRGDIIGVTGSPGKTK----KG----ELSIIPKKLTLLSPC 390 (553)
Q Consensus 353 ~~~~L~~gs~V~V~G~v~~~~----~g----~~El~~~~i~vl~~~ 390 (553)
..+.|+.|+.|.|+|.+.... .| .+||.++.|++|.-+
T Consensus 57 v~~yL~KG~~V~VeGrL~~~~y~dkdG~kr~~~eIva~~I~fl~~~ 102 (161)
T PRK06293 57 MLPYLKKGSGVIVAGEMSPESYVDKDGSPQSSLVVSVDTIKFSPFG 102 (161)
T ss_pred HHHhCCCCCEEEEEEEEEeCccCCCCCCEEEEEEEEEeEEEECcCC
Confidence 445679999999999996432 22 589999999998643
No 367
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=27.63 E-value=97 Score=24.23 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=31.2
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCH-HHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSE-EEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~-~~~~~~~~~l~~gd~V~v~ 152 (553)
.+.|+|..+...| +|+.|.++ +...+........ ... ...+.+.+||.|.|+
T Consensus 6 ~~~g~V~~i~~~G---~fv~l~~~---~~Gl~~~~~l~~~~~~~-~~~~~~~~Gd~v~v~ 58 (72)
T cd05689 6 RLFGKVTNLTDYG---CFVELEEG---VEGLVHVSEMDWTNKNI-HPSKVVSLGDEVEVM 58 (72)
T ss_pred EEEEEEEEEEeeE---EEEEcCCC---CEEEEEEEeccCccccc-CcccEeCCCCEEEEE
Confidence 5899999999998 79999763 3333333222100 000 112346888888774
No 368
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=27.49 E-value=71 Score=25.32 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhhhCCeEEE
Q psy11418 212 IVRAQIIAYVRRYLDSLGFLEV 233 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~~~gF~EV 233 (553)
+.|.+|++.||+||...|=++|
T Consensus 2 ~kre~i~~~iR~~fs~lG~I~v 23 (62)
T PF15513_consen 2 RKREEITAEIRQFFSQLGEIAV 23 (62)
T ss_pred cHHHHHHHHHHHHHHhcCcEEE
Confidence 4688999999999999997765
No 369
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=27.25 E-value=80 Score=26.28 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=35.4
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecc
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPG 156 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~ 156 (553)
.|+-|.|...+......- ..+.+..-+..+.+++.+..... | .+-.++..+..||.|.|+|-.+
T Consensus 32 pGQ~v~v~~~~~~~~~~R-~yS~~s~~~~~~~~~~~ik~~~~-G--~~S~~L~~l~~Gd~v~i~gP~G 95 (99)
T PF00970_consen 32 PGQFVSVRVPINGKQVSR-PYSPASSPDDKGYLEFAIKRYPN-G--RVSRYLHQLKPGDEVEIRGPYG 95 (99)
T ss_dssp TT-EEEEEEEETTEEEEE-EEEBCSSTTSSSEEEEEEEECTT-S--HHHHHHHTSCTTSEEEEEEEES
T ss_pred cceEEEEEEccCCcceec-ceeEeeecCCCCcEEEEEEeccC-C--HHHHHHHhCCCCCEEEEEEccc
Confidence 466777776632110000 01111112334578888887532 2 2445667799999999998654
No 370
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=27.24 E-value=50 Score=36.92 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHh--CCcEEeeCceeeccC
Q psy11418 426 IVRAQIIAYVRRYLDS--LGFLEVETPMMNMIA 456 (553)
Q Consensus 426 ~~Rs~i~~~iR~f~~~--~~F~EV~TPiL~~~~ 456 (553)
.++..|..+.|++|-. .+++||+||+|.+..
T Consensus 41 ~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~ 73 (558)
T COG0423 41 ELKNNIKEAWRKSFVTEREDVVEIDTPIILPEE 73 (558)
T ss_pred HHHHHHHHHHHHHHeeccCCeEEecccccCcHH
Confidence 5678899999999965 579999999999876
No 371
>PRK08182 single-stranded DNA-binding protein; Provisional
Probab=27.10 E-value=1.8e+02 Score=27.05 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=34.2
Q ss_pred EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc----cCC----ceeEeeeeEEEecc
Q psy11418 120 KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT----KKG----ELSIIPKKLTLLSP 175 (553)
Q Consensus 120 ~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t----~~g----e~~l~~~~i~il~~ 175 (553)
.+.|++-.+. .. ...+.|..||.|.|+|.+... +.| .++|.+.+|.+|..
T Consensus 55 w~~V~~wg~~----Ae--~v~~~l~KG~~V~V~GrL~~~~w~dkdG~~r~~~eI~a~~i~~l~~ 112 (148)
T PRK08182 55 WAPVELWHRD----AE--HWARLYQKGMRVLVEGRMERDEWTDNEDNERVTFKVEARRVGILPY 112 (148)
T ss_pred EEEEEEEhHH----HH--HHHHhcCCCCEEEEEEEEEecccCCCCCCEEEEEEEEEeEEEEcCC
Confidence 4666666542 11 245679999999999998632 223 36888899988754
No 372
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=27.05 E-value=60 Score=37.38 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 425 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 425 l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
..++..|.+.+++.+.+.||.||.||+|....
T Consensus 274 ~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~ 305 (639)
T PRK12444 274 QIIRNELEAFLREIQKEYNYQEVRTPFMMNQE 305 (639)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCHH
Confidence 45667799999999999999999999999886
No 373
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional
Probab=26.97 E-value=1.9e+02 Score=27.74 Aligned_cols=55 Identities=20% Similarity=0.152 Sum_probs=34.8
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCC-------EEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEG-------LKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~-------~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.|.|+|.++...| +|++|-+-. ..+...+..... ......+....+..||+|.++
T Consensus 67 iV~GkV~~i~~~g---~~V~I~~~~~~~~~l~~~~~G~l~~s~i-~~~~~~~~~~~~~~GD~V~ak 128 (189)
T PRK09521 67 IVYGRVVDVKEQR---ALVRIVSIEGSERELATSKLAYIHISQV-SDGYVESLTDAFKIGDIVRAK 128 (189)
T ss_pred EEEEEEEEEcCCe---EEEEEEEecccccccCCCceeeEEhhHc-ChhhhhhHHhccCCCCEEEEE
Confidence 4789999998776 788885421 235555554433 112222345668999999885
No 374
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=26.65 E-value=61 Score=35.93 Aligned_cols=61 Identities=23% Similarity=0.235 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEeeCceeeccC----CCcc-------eeeeeec-CCCCCcceeEEeChhHHH
Q psy11418 425 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGAT-------AKPFVTH-HNDLNMDLYMRIAPELYL 485 (553)
Q Consensus 425 l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~----~ga~-------~~~~~t~-~~~~~~~~yL~~Spel~~ 485 (553)
++++..|...+++-+.+.||.||.||.|.+.+ +|.. ++.+... ..-.+.+++|+-..|-.+
T Consensus 38 ~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i 110 (472)
T TIGR00408 38 FKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAM 110 (472)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHH
Confidence 46799999999999999999999999998776 2322 3444321 112346788887755443
No 375
>PLN02837 threonine-tRNA ligase
Probab=26.54 E-value=63 Score=37.14 Aligned_cols=34 Identities=21% Similarity=0.118 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.-.+++.++.+.+++....+||.||.||.|....
T Consensus 245 ~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~ 278 (614)
T PLN02837 245 KGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKAD 278 (614)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHH
Confidence 3578899999999999999999999999999876
No 376
>PRK06763 F0F1 ATP synthase subunit alpha; Validated
Probab=26.37 E-value=1.2e+02 Score=29.80 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=38.8
Q ss_pred EEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc
Q psy11418 93 LSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK 157 (553)
Q Consensus 93 V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~ 157 (553)
.+|.|||.-+-. +.+++........+|++++.. ..+.+||.|.++|.+.+
T Consensus 40 ~tiEGrVvEV~~---~~i~iesk~yn~~v~i~~d~~------------~nvKVGD~VKaTG~m~r 89 (213)
T PRK06763 40 STIEGRVVEVDN---GVIVIKSKQYEEPVSVYIDSL------------SNVKVGDEVKATGSMMR 89 (213)
T ss_pred ceeeeEEEEEeC---CEEEEEeccCCCceEEEecCC------------CCcccCcEEEEchHHHH
Confidence 589999998852 456677777777899987654 34799999999998654
No 377
>COG2965 PriB Primosomal replication protein N [DNA replication, recombination, and repair]
Probab=26.34 E-value=1.7e+02 Score=25.40 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=30.3
Q ss_pred EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc--cC--CceeEeeeeEEE
Q psy11418 120 KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT--KK--GELSIIPKKLTL 172 (553)
Q Consensus 120 ~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t--~~--ge~~l~~~~i~i 172 (553)
.-|+.++-....+......+..++..|+.|.|.|.+... .. +.+-|++..+..
T Consensus 45 ~RQv~~~mpv~vsG~qa~~lt~~i~~Gs~i~v~GFla~~~~~sg~~~lvlha~qi~~ 101 (103)
T COG2965 45 QRQVWCEMPVRVSGRQAEELTQSITVGSYILVVGFLACHKRRSGLSKLVLHAEQIEF 101 (103)
T ss_pred ceeEEEEccEEeechhhhhhhhccccccEEEEEEEEEeecccCCccEEEEEeeEEEe
Confidence 445555433221122233456679999999999998632 23 345555555543
No 378
>PRK08182 single-stranded DNA-binding protein; Provisional
Probab=25.99 E-value=86 Score=29.10 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=28.4
Q ss_pred hhcccCCccEEEEEcccccCC----CC----ceeEEeeeEEEEecc
Q psy11418 353 DLVKIKRGDIIGVTGSPGKTK----KG----ELSIIPKKLTLLSPC 390 (553)
Q Consensus 353 ~~~~L~~gs~V~V~G~v~~~~----~g----~~El~~~~i~vl~~~ 390 (553)
..+.|..|+.|.|+|.+.... .| .+||.++.+.+|...
T Consensus 68 v~~~l~KG~~V~V~GrL~~~~w~dkdG~~r~~~eI~a~~i~~l~~r 113 (148)
T PRK08182 68 WARLYQKGMRVLVEGRMERDEWTDNEDNERVTFKVEARRVGILPYR 113 (148)
T ss_pred HHHhcCCCCEEEEEEEEEecccCCCCCCEEEEEEEEEeEEEEcCCc
Confidence 345578999999999985432 22 488999999987643
No 379
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=25.89 E-value=93 Score=24.69 Aligned_cols=48 Identities=10% Similarity=0.052 Sum_probs=33.0
Q ss_pred CCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC-CCceeEEeeeEE
Q psy11418 332 RNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-KGELSIIPKKLT 385 (553)
Q Consensus 332 ~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~-~g~~El~~~~i~ 385 (553)
.+++.+++... .+......|..|+.|.|+|.+.... .+++.+.++++.
T Consensus 27 ~~~i~~~~f~~------~~~~~~~~l~~g~~v~v~g~v~~~~~~~~~~l~v~~i~ 75 (78)
T cd04489 27 DASIRCVMWRS------NARRLGFPLEEGMEVLVRGKVSFYEPRGGYQLIVEEIE 75 (78)
T ss_pred CeEEEEEEEcc------hhhhCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEE
Confidence 34455555542 2344456789999999999998544 577888888773
No 380
>KOG3416|consensus
Probab=25.60 E-value=3.5e+02 Score=24.67 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=33.4
Q ss_pred EEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEee
Q psy11418 93 LSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGS 154 (553)
Q Consensus 93 V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~ 154 (553)
|--.|+..+- ..|+++.=.-+-|.++.|-+-+-.+. -..+.+||+|..+|=
T Consensus 23 vl~~g~~tkT-kdg~~v~~~kVaD~TgsI~isvW~e~----------~~~~~PGDIirLt~G 73 (134)
T KOG3416|consen 23 VLEYGRATKT-KDGHEVRSCKVADETGSINISVWDEE----------GCLIQPGDIIRLTGG 73 (134)
T ss_pred EEeeceeeec-cCCCEEEEEEEecccceEEEEEecCc----------CcccCCccEEEeccc
Confidence 3445665554 44557777777888886655554432 235899999999873
No 381
>cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide. The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. DHX8 is also known as HRH1 (human RNA helicase 1) in Homo sapiens and PRP22 in Saccharomyces cerevisiae.
Probab=25.56 E-value=2.4e+02 Score=22.50 Aligned_cols=55 Identities=24% Similarity=0.259 Sum_probs=32.7
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHH-HHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEF-ASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~-~~~~~~l~~gd~V~v~ 152 (553)
.+.|.|.++...| +|++|-+....+...+...... ...+ ....+.+.+||.|.|.
T Consensus 3 ~~~g~V~~v~~~G---~fv~l~~~~~~~~gll~~s~l~-~~~~~~~~~~~~~~Gd~v~v~ 58 (79)
T cd05684 3 IYKGKVTSIMDFG---CFVQLEGLKGRKEGLVHISQLS-FEGRVANPSDVVKRGQKVKVK 58 (79)
T ss_pred EEEEEEEEEEeee---EEEEEeCCCCCcEEEEEhHhcc-CCCCcCChhheeCCCCEEEEE
Confidence 4689999999888 7999964311244444433321 1111 1122457899999885
No 382
>PF11736 DUF3299: Protein of unknown function (DUF3299); InterPro: IPR021727 This is a family of bacterial proteins of unknown function.
Probab=24.87 E-value=5.6e+02 Score=23.75 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=38.1
Q ss_pred ccCCcEEEEEEEEEeeecCCCce-EEEEEEeCCE-----------EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEee
Q psy11418 87 VLENVTLSVAGRVHAIRESGTKL-MFYDLRGEGL-----------KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGS 154 (553)
Q Consensus 87 ~~~~~~V~v~Gri~~~R~~g~kl-~Fi~l~d~~~-----------~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~ 154 (553)
...|+.|+|.|+|.-+-..+.++ -|+-+.+-+. .|.|...+.. ..-..-+.|.|+|+
T Consensus 52 ~L~Gk~V~i~Gf~vPle~~~~~v~eFlLvP~~gaC~h~PpPppNqiV~V~~~~~~-----------~~~~~~~pv~V~G~ 120 (146)
T PF11736_consen 52 ALDGKQVRIPGFMVPLEQEEGKVTEFLLVPYFGACIHVPPPPPNQIVHVKMPKPI-----------PVDSLYDPVWVEGT 120 (146)
T ss_pred HhCCCEEEEeeEEEeeccCCCcEEEEEEeccCCcCcCCCCCCCccEEEEEeCCCc-----------cccccceeEEEEEE
Confidence 35789999999999998654344 6777776331 2222222211 11234589999999
Q ss_pred cccc
Q psy11418 155 PGKT 158 (553)
Q Consensus 155 ~~~t 158 (553)
+...
T Consensus 121 l~~~ 124 (146)
T PF11736_consen 121 LKVE 124 (146)
T ss_pred EEec
Confidence 7643
No 383
>cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 3 (ec3) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=24.83 E-value=1.3e+02 Score=22.75 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=32.4
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.+.|.|..+...| +|++|. .+..++...... ..........+.+||.|.|.
T Consensus 4 ~~~g~V~~v~~~g---~~v~l~----~~~g~l~~~e~~-~~~~~~~~~~~~~Gd~v~v~ 54 (68)
T cd05688 4 VVEGTVKSITDFG---AFVDLG----GVDGLLHISDMS-WGRVKHPSEVVNVGDEVEVK 54 (68)
T ss_pred EEEEEEEEEEeee---EEEEEC----CeEEEEEhHHCC-CccccCHhHEECCCCEEEEE
Confidence 4789999998877 788884 266666554331 11111122457999999885
No 384
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=24.73 E-value=2.3e+02 Score=29.56 Aligned_cols=95 Identities=16% Similarity=0.324 Sum_probs=62.5
Q ss_pred HHHHHHHh-----hhCCeEEEecceeccccCCC------CCcceeeccCCC-CcceeeeeCHHHHHHHHHHc-cC---Cc
Q psy11418 218 IAYVRRYL-----DSLGFLEVETPMMNMIAGGA------TAKPFVTHHNDL-NMDLYMRIAPELYLKMLVVG-GL---DR 281 (553)
Q Consensus 218 ~~~ir~fl-----~~~gF~EV~TPil~~~~gga------~a~~F~t~~~~~-~~~~~L~~Spql~lk~l~~~-g~---~r 281 (553)
|..+++|| .+.+.+.|..|.+.....|- .-+|..-....+ +..+-.-.|---|+.+.+.. || +.
T Consensus 4 I~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~f~~k~~~~~~~eiVhSLAKWKR~aL~~y~f~~geG 83 (309)
T cd00645 4 IKFIKDFFQDNLAKELNLIRVSAPLFVEKGSGLNDNLNGVEKPVSFKVKALPDATLEVVHSLAKWKRLALARYGFSLGEG 83 (309)
T ss_pred HHHHHHHHHHHHHHHhCeEEecCCeEEecCCCCccCCCCcccceEeecCCCCCceeEEeeehHHHHHHHHHhcCCCCCce
Confidence 34445554 45599999999997544331 124544333333 46666777888887765532 44 56
Q ss_pred EEEEcccccc-CCCCCCccCCcceeeeEeccC
Q psy11418 282 VYEVGRQFRN-EGIDLTHNPEFTTCEFYMAYA 312 (553)
Q Consensus 282 Vfei~~~FR~-E~~~~~H~~EFt~lE~e~a~~ 312 (553)
+|+=..+.|. |..|..|.-=--|-|||....
T Consensus 84 lytdMnAiR~dE~ldn~HS~yVDQWDWEkvI~ 115 (309)
T cd00645 84 LYTDMNAIRPDEDLDNIHSIYVDQWDWEKVIS 115 (309)
T ss_pred eccCCccccCCcccCccceeEeccccHHhhcC
Confidence 8888888775 777889987777888887655
No 385
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=24.42 E-value=75 Score=32.92 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCcEEeeCceeecc
Q psy11418 430 QIIAYVRRYLDSLGFLEVETPMMNMI 455 (553)
Q Consensus 430 ~i~~~iR~f~~~~~F~EV~TPiL~~~ 455 (553)
.+...+|++|...||.||.||.+.+.
T Consensus 76 ~~~~~ir~~l~~~Gf~Ev~~~~~~s~ 101 (294)
T TIGR00468 76 RVIDEIRDIFLGLGFTEEKGPEVETD 101 (294)
T ss_pred HHHHHHHHHHHHCCCEEeeCCceecc
Confidence 45667899999999999999999865
No 386
>COG3689 Predicted membrane protein [Function unknown]
Probab=24.32 E-value=4.3e+02 Score=27.09 Aligned_cols=91 Identities=16% Similarity=0.101 Sum_probs=54.1
Q ss_pred cccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc-----cC
Q psy11418 86 QVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT-----KK 160 (553)
Q Consensus 86 ~~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t-----~~ 160 (553)
++-.|+++.+.|.|-+=-..+++-.| ..|= +-+=|++++..+.-.-.+ +-...++..++|.|+|++... ++
T Consensus 171 def~Gk~Ie~tGFVy~~~~~~~N~lf-laRF--giicC~ADa~vygl~v~~-~~~~~y~ndtWltvkGtl~~e~~~~~~~ 246 (271)
T COG3689 171 DEFAGKKIEFTGFVYNDESFPKNYLF-LARF--GIICCAADAGVYGLLVEL-DNQTDYKNDTWLTVKGTLSSEYLSDFKK 246 (271)
T ss_pred hhhcCceEEEEEEEECCCCCCcceee-hhhh--heeeeeccceeEEEEEEc-cccccCCCCceEEEEeEEEeeecCchhh
Confidence 34578999999999985555533333 2221 122233332211000000 012458899999999998743 24
Q ss_pred CceeEeeeeEEEeccCCCCC
Q psy11418 161 GELSIIPKKLTLLSPCLHML 180 (553)
Q Consensus 161 ge~~l~~~~i~il~~~~~~l 180 (553)
.-..|+|++++.+.++..|+
T Consensus 247 ~ipvi~v~sv~~I~kP~nPY 266 (271)
T COG3689 247 RIPVIEVDSVEVIPKPANPY 266 (271)
T ss_pred cCcEEEeeeeeecCCCCCCc
Confidence 45788999999998776654
No 387
>TIGR00621 ssb single stranded DNA-binding protein (ssb). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.07 E-value=93 Score=29.32 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=28.7
Q ss_pred HhhcccCCccEEEEEcccccCC----CC----ceeEEeeeEEEEec
Q psy11418 352 SDLVKIKRGDIIGVTGSPGKTK----KG----ELSIIPKKLTLLSP 389 (553)
Q Consensus 352 ~~~~~L~~gs~V~V~G~v~~~~----~g----~~El~~~~i~vl~~ 389 (553)
...+.|..|+.|.|+|.+.... .| .+||.|++|..|..
T Consensus 64 ~~~~~l~KG~~V~V~G~L~~~~~~~kdG~~~~~~ev~a~~i~~L~~ 109 (164)
T TIGR00621 64 VAAQYLKKGSLVYVEGRLRTRKWEDQNGQKRSKTEIIADNVQLLDL 109 (164)
T ss_pred HHHHhCCCCCEEEEEEEEEeceEECCCCcEEEEEEEEEEEEeeccc
Confidence 3446689999999999996442 22 48999999987764
No 388
>PLN02320 seryl-tRNA synthetase
Probab=23.84 E-value=72 Score=35.69 Aligned_cols=46 Identities=13% Similarity=0.249 Sum_probs=35.1
Q ss_pred ccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcc
Q psy11418 410 QRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGAT 460 (553)
Q Consensus 410 ~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~ 460 (553)
.|+..|. + ...++..++++.+++.+..+||.||.||.|.... .|++
T Consensus 223 ~~f~~L~-g----~~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG 270 (502)
T PLN02320 223 SKFYYLK-N----EAVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCG 270 (502)
T ss_pred CeeEEeC-C----HHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcC
Confidence 4555555 3 2334667889999999999999999999999887 5554
No 389
>PRK06386 replication factor A; Reviewed
Probab=23.83 E-value=4.7e+02 Score=28.05 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=49.1
Q ss_pred cEEEEEEEEEeee------cCC-CceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCce
Q psy11418 91 VTLSVAGRVHAIR------ESG-TKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGEL 163 (553)
Q Consensus 91 ~~V~v~Gri~~~R------~~g-~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~ 163 (553)
.-|+|.|+|..+- +.| ..+.=..|-|++|+|-+++.... ..|..||+|.+.+-..+.=.|..
T Consensus 13 ~~V~v~akVl~~~~r~i~~~~g~~~~~~gllgDeTG~I~fT~W~~~-----------~~l~~Gd~v~i~na~v~~~~G~~ 81 (358)
T PRK06386 13 QNVDLKVKVLSLNKRTIKNDRGETIYYYGIIGDETGTVPFTAWEFP-----------DAVKSGDVIEIKYCYSKEYNGKI 81 (358)
T ss_pred CcEEEEEEEEEccceEEecCCCCeEEEEEEEECCcceEEEEecCCc-----------ccCCCCCEEEEEeEEEeeECCEE
Confidence 3478888887553 123 22334457789999998886531 24899999999998888778888
Q ss_pred eEeeeeE
Q psy11418 164 SIIPKKL 170 (553)
Q Consensus 164 ~l~~~~i 170 (553)
+|.+...
T Consensus 82 ~Lnv~~~ 88 (358)
T PRK06386 82 RIYFDSR 88 (358)
T ss_pred EEEEcCc
Confidence 8888644
No 390
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1). Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.
Probab=22.78 E-value=1.3e+02 Score=23.87 Aligned_cols=35 Identities=29% Similarity=0.485 Sum_probs=28.1
Q ss_pred hcccCCccEEEEEcccccCCCCceeEEeeeEEEEec
Q psy11418 354 LVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSP 389 (553)
Q Consensus 354 ~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~ 389 (553)
...+..|..|.|.|.+.. ..+..++.+.++..+..
T Consensus 44 ~~~l~~g~~v~v~G~v~~-~~~~~~l~~~~i~~l~~ 78 (83)
T cd04492 44 EEKFKPGDIVHVKGRVEE-YRGRLQLKIQRIRLVTE 78 (83)
T ss_pred HhhCCCCCEEEEEEEEEE-eCCceeEEEEEEEECCc
Confidence 567899999999999965 35678899888876654
No 391
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=22.71 E-value=79 Score=35.82 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHH-HhCCcEEeeCceeeccC
Q psy11418 425 FIVRAQIIAYVRRYL-DSLGFLEVETPMMNMIA 456 (553)
Q Consensus 425 l~~Rs~i~~~iR~f~-~~~~F~EV~TPiL~~~~ 456 (553)
.+++..|.+.+|++| ...|++||+||+|++..
T Consensus 37 ~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~ 69 (551)
T TIGR00389 37 AVLKNNIKNAWRKFFIKNERVLEIDTPIITPEE 69 (551)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeeccccCCHH
Confidence 467889999999999 47889999999999886
No 392
>KOG2783|consensus
Probab=22.61 E-value=1.2e+02 Score=32.71 Aligned_cols=57 Identities=26% Similarity=0.320 Sum_probs=45.0
Q ss_pred CCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCCCccCCcceeeeEeccC
Q psy11418 256 DLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA 312 (553)
Q Consensus 256 ~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~ 312 (553)
|.+....||.-.-.|---++..|.+.--..|-+||-..+|++|.|=|.|+|.-.-++
T Consensus 128 y~n~~~~lr~htsahq~e~~~~~~~~flv~~DVyrrdeidsthypvfhq~eg~~~~s 184 (436)
T KOG2783|consen 128 YVNHTHCLRAHTSAHQHELFQKGLDGFLVTGDVYRRDEIDSTHYPVFHQMEGVRLWS 184 (436)
T ss_pred eecceeeehhcchhhHHHHHHhcccccceeeeeeeeccccccccceeccccceeEEe
Confidence 345566677555555555667788888889999999999999999999999877666
No 393
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=22.53 E-value=87 Score=34.87 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhCCcEEeeCceeecc
Q psy11418 426 IVRAQIIAYVRRYLDSLGFLEVETPMMNMI 455 (553)
Q Consensus 426 ~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~ 455 (553)
..+..+.+.||+.|...||-|++||++-++
T Consensus 233 ~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~ 262 (489)
T PRK04172 233 HPYREFIDEVRDILVEMGFEEMKGPLVETE 262 (489)
T ss_pred ChHHHHHHHHHHHHHHCCCEEeeCCeeeec
Confidence 346678899999999999999999999754
No 394
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=22.34 E-value=99 Score=35.57 Aligned_cols=59 Identities=25% Similarity=0.339 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--C--------CcceeeeeecCCCCCcceeEEeChhHHH
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--G--------GATAKPFVTHHNDLNMDLYMRIAPELYL 485 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~--------ga~~~~~~t~~~~~~~~~yL~~Spel~~ 485 (553)
.-.+++..+.+.+++.+.+.||.+|.||.|.... . +..++.+.. -+.+++|+-..+..+
T Consensus 225 ~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~----~~e~l~Lrp~~c~~~ 293 (613)
T PRK03991 225 KGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKS----DKKDLMLRFAACFGQ 293 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecC----CCceEEEecCCCHHH
Confidence 4578999999999999999999999999995442 1 122444431 145677776655433
No 395
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=22.09 E-value=2.6e+02 Score=22.63 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=32.4
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCC---HHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQS---EEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~---~~~~~~~~~~l~~gd~V~v~ 152 (553)
.|.|.|.++...| +|++|..+ +..++....... ..........+..||.|.+.
T Consensus 9 iV~g~V~~i~~~g---~~v~i~~~---~~G~l~~se~~~~~~~~~~~~~~~~l~vGd~i~~~ 64 (86)
T cd05789 9 VVIGRVTEVGFKR---WKVDINSP---YDAVLPLSEVNLPRTDEDELNMRSYLDEGDLIVAE 64 (86)
T ss_pred EEEEEEEEECCCE---EEEECCCC---eEEEEEHHHccCCCCccchHHHHhhCCCCCEEEEE
Confidence 4689999998777 67888543 455555433210 01112334568999998874
No 396
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=21.32 E-value=1.9e+02 Score=30.57 Aligned_cols=54 Identities=22% Similarity=0.071 Sum_probs=35.7
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.|.|.|.++-..| +|++|-. .+.++.++....+. ........+.++.||.|.|.
T Consensus 20 vV~g~V~~I~d~G---afV~L~E-Y~gvEGlIhiSElS-~~ri~~i~d~vkvGd~v~vk 73 (319)
T PTZ00248 20 LVMVKVVRITEMG---AYVSLLE-YDDIEGMILMSELS-KRRIRSINKLIRVGRHEVVV 73 (319)
T ss_pred EEEEEEEEEeCCe---EEEEecC-CCCcEEEEEHHHhc-ccccCCHHHhcCCCCEEEEE
Confidence 5889999999999 7999953 22477777655431 11111233458999998874
No 397
>PRK13732 single-stranded DNA-binding protein; Provisional
Probab=21.24 E-value=1.1e+02 Score=29.42 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=29.8
Q ss_pred HhhcccCCccEEEEEcccccCC---CC----ceeEEee---eEEEEeccC
Q psy11418 352 SDLVKIKRGDIIGVTGSPGKTK---KG----ELSIIPK---KLTLLSPCL 391 (553)
Q Consensus 352 ~~~~~L~~gs~V~V~G~v~~~~---~g----~~El~~~---~i~vl~~~~ 391 (553)
.+.+.|..|+.|.|+|.+.... .| ..||.|+ ++.+|++..
T Consensus 67 ~v~~~L~KG~~V~VeGrL~~r~ye~dG~kr~~~eIiv~~~g~~~fL~~~~ 116 (175)
T PRK13732 67 VAGEYLRKGAQVYIEGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGRAP 116 (175)
T ss_pred HHHHhcCCCCEEEEEEEEEeeeEccCCeEEEEEEEEEeecCeEEEecCCC
Confidence 3456689999999999985432 23 4889998 899988653
No 398
>PLN02734 glycyl-tRNA synthetase
Probab=20.30 E-value=84 Score=36.49 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHH-hCCcEEeeCceeeccC
Q psy11418 426 IVRAQIIAYVRRYLD-SLGFLEVETPMMNMIA 456 (553)
Q Consensus 426 ~~Rs~i~~~iR~f~~-~~~F~EV~TPiL~~~~ 456 (553)
.+++.|++..|++|. ..+.+||+||+|++..
T Consensus 110 ~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~ 141 (684)
T PLN02734 110 AVKSNVLAFWRQHFVLEENMLEVECPCVTPEV 141 (684)
T ss_pred HHHHHHHHHHHHHHhccCCeeEeeccccCCHh
Confidence 578899999999995 5566799999999887
No 399
>PTZ00213 asparagine synthetase A; Provisional
Probab=20.13 E-value=5e+02 Score=27.58 Aligned_cols=101 Identities=18% Similarity=0.287 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhh-----hCCeEEEecceeccccCCCC------CcceeeccCCC-CcceeeeeCHHHHHHHHHH-cc
Q psy11418 212 IVRAQIIAYVRRYLD-----SLGFLEVETPMMNMIAGGAT------AKPFVTHHNDL-NMDLYMRIAPELYLKMLVV-GG 278 (553)
Q Consensus 212 ~~rs~i~~~ir~fl~-----~~gF~EV~TPil~~~~gga~------a~~F~t~~~~~-~~~~~L~~Spql~lk~l~~-~g 278 (553)
+.....|..++++|. +.+.+.|..|++.....|-+ -+|.......+ +..+-.-.|---|+.+.+. .|
T Consensus 9 ~~~q~aI~~iK~~F~~~L~~~LnL~rVsaPLfv~~~~GlnDnLnG~ErpV~f~~k~~~~~~~evVhSLAKWKR~aL~~y~ 88 (348)
T PTZ00213 9 IDLQEQILKVKQIFSEALAKELNLIRVEAPLLAEVGDGTQDNLSGVEKAVQVHVKGIPNSVFEVVHSLAKWKRLTLGEHK 88 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCeeEecCCeEEcCCCCcccCCCCeeeeeEEecCCCCCceeEEehhhHHHHHHHHHhcC
Confidence 334445566666663 45999999999975433321 23443333333 4566677788878776543 23
Q ss_pred C---CcEEEEccccc-cCCCCCCccCCcceeeeEeccC
Q psy11418 279 L---DRVYEVGRQFR-NEGIDLTHNPEFTTCEFYMAYA 312 (553)
Q Consensus 279 ~---~rVfei~~~FR-~E~~~~~H~~EFt~lE~e~a~~ 312 (553)
| +.+|+=.++.| +|..|..|.-=--|-|||....
T Consensus 89 f~~geGlytdMnAiR~dE~ldn~HS~yVDQWDWEkvI~ 126 (348)
T PTZ00213 89 FPVGEGIYTDMNALRVEEELDNIHSVYVDQWDWEMVIA 126 (348)
T ss_pred CCCCceeeeccccccCCcccCccceeEeccccHHHhcC
Confidence 3 46888777776 5777889987777888887765
Done!