Query psy11418
Match_columns 553
No_of_seqs 409 out of 3272
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 17:55:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11418.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11418hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bju_A Lysyl-tRNA synthetase; 100.0 1.2E-76 3.9E-81 647.9 40.0 292 38-329 3-294 (521)
2 4ex5_A Lysine--tRNA ligase; st 100.0 7.1E-76 2.4E-80 638.8 33.4 288 38-329 34-322 (529)
3 1e1o_A Lysyl-tRNA synthetase, 100.0 4.8E-74 1.6E-78 624.5 34.8 288 39-329 13-301 (504)
4 3a74_A Lysyl-tRNA synthetase; 100.0 2.1E-73 7.3E-78 618.4 36.1 288 39-329 4-292 (493)
5 1c0a_A Aspartyl tRNA synthetas 100.0 1.5E-57 5.1E-62 503.7 25.6 236 89-333 14-260 (585)
6 3nem_A Aspartyl-tRNA synthetas 100.0 1.7E-57 5.8E-62 487.2 25.0 236 89-332 15-258 (438)
7 1l0w_A Aspartyl-tRNA synthetas 100.0 4.2E-57 1.4E-61 498.8 25.5 236 89-334 15-267 (580)
8 3i7f_A Aspartyl-tRNA synthetas 100.0 2.3E-56 8E-61 486.3 25.4 240 88-332 60-365 (548)
9 3m4p_A Ehasnrs, asparaginyl-tR 100.0 1.8E-56 6.2E-61 481.4 23.9 235 88-332 28-275 (456)
10 2xgt_A Asparaginyl-tRNA synthe 100.0 1.7E-55 5.8E-60 472.7 21.7 233 88-332 9-251 (435)
11 1eov_A ASPRS, aspartyl-tRNA sy 100.0 4.5E-55 1.5E-59 474.8 24.8 241 88-332 34-299 (487)
12 1wyd_A Hypothetical aspartyl-t 100.0 1.8E-53 6.2E-58 455.6 25.0 234 89-332 15-253 (429)
13 4ah6_A Aspartate--tRNA ligase, 100.0 2.4E-53 8.1E-58 468.2 25.2 248 66-332 9-269 (617)
14 1x54_A Asparaginyl-tRNA synthe 100.0 9.4E-53 3.2E-57 451.0 23.2 235 89-332 15-254 (434)
15 1n9w_A Aspartyl-tRNA synthetas 100.0 9.2E-53 3.1E-57 449.3 21.0 226 89-332 12-245 (422)
16 3a5y_A GENX, putative lysyl-tR 100.0 3.8E-34 1.3E-38 298.0 12.7 124 207-330 32-160 (345)
17 3nem_A Aspartyl-tRNA synthetas 100.0 3.9E-33 1.3E-37 298.7 18.0 217 325-548 36-315 (438)
18 4ex5_A Lysine--tRNA ligase; st 100.0 2.6E-33 8.9E-38 304.8 10.6 170 325-496 106-276 (529)
19 3bju_A Lysyl-tRNA synthetase; 100.0 5.9E-33 2E-37 303.2 11.3 172 325-496 76-248 (521)
20 1l0w_A Aspartyl-tRNA synthetas 100.0 4.3E-32 1.5E-36 299.5 12.7 197 325-529 36-288 (580)
21 3i7f_A Aspartyl-tRNA synthetas 100.0 1.9E-31 6.5E-36 290.6 16.9 216 325-547 82-424 (548)
22 1c0a_A Aspartyl tRNA synthetas 100.0 1.2E-31 4.1E-36 296.7 13.8 196 325-529 35-281 (585)
23 3m4p_A Ehasnrs, asparaginyl-tR 100.0 1.5E-31 5.2E-36 287.7 14.0 216 325-549 51-338 (456)
24 4ah6_A Aspartate--tRNA ligase, 100.0 2.7E-31 9.3E-36 292.9 15.1 198 325-528 41-290 (617)
25 1e1o_A Lysyl-tRNA synthetase, 100.0 1.2E-31 4.1E-36 291.5 10.4 223 325-551 84-358 (504)
26 1nnh_A Asparaginyl-tRNA synthe 100.0 4.3E-31 1.5E-35 270.1 11.1 132 195-331 1-143 (294)
27 1wyd_A Hypothetical aspartyl-t 100.0 1.7E-30 5.7E-35 278.0 14.4 216 325-548 36-310 (429)
28 3a74_A Lysyl-tRNA synthetase; 100.0 8.1E-31 2.8E-35 284.6 10.2 223 325-551 76-348 (493)
29 1eov_A ASPRS, aspartyl-tRNA sy 100.0 1.1E-29 3.6E-34 275.8 15.6 217 325-546 57-360 (487)
30 1x54_A Asparaginyl-tRNA synthe 100.0 2.1E-29 7.3E-34 270.0 14.7 218 325-549 36-315 (434)
31 2xgt_A Asparaginyl-tRNA synthe 100.0 6.6E-30 2.3E-34 274.2 9.5 196 325-531 32-291 (435)
32 1n9w_A Aspartyl-tRNA synthetas 100.0 7.8E-29 2.7E-33 264.6 13.0 207 325-547 33-300 (422)
33 3qtc_A Pyrrolysyl-tRNA synthet 99.9 5.4E-22 1.9E-26 202.4 8.2 171 154-328 18-206 (290)
34 3a5y_A GENX, putative lysyl-tR 99.8 9.2E-20 3.1E-24 189.7 9.0 126 418-550 30-196 (345)
35 1nnh_A Asparaginyl-tRNA synthe 99.6 1.1E-15 3.6E-20 156.1 6.5 81 409-495 1-91 (294)
36 2rhq_A Phenylalanyl-tRNA synth 99.2 2.1E-11 7.3E-16 124.3 8.4 115 215-329 56-184 (294)
37 1b7y_A Phers, protein (phenyla 99.1 3E-10 1E-14 118.1 10.4 114 216-329 105-245 (350)
38 3qtc_A Pyrrolysyl-tRNA synthet 99.0 2.9E-11 9.9E-16 123.0 -1.1 111 372-486 22-144 (290)
39 3dsq_A Pyrrolysyl-tRNA synthet 98.9 1.5E-09 5.2E-14 110.2 8.6 118 214-333 73-205 (288)
40 1z7m_A ATP phosphoribosyltrans 98.7 1.1E-07 3.9E-12 98.7 12.7 130 211-343 36-183 (344)
41 3od1_A ATP phosphoribosyltrans 98.6 1.7E-07 5.8E-12 99.3 11.3 131 211-344 24-170 (400)
42 3lc0_A Histidyl-tRNA synthetas 98.5 1.9E-07 6.5E-12 100.6 9.6 131 211-344 43-192 (456)
43 3net_A Histidyl-tRNA synthetas 98.5 2.2E-07 7.4E-12 100.4 9.2 131 210-344 25-189 (465)
44 1wu7_A Histidyl-tRNA synthetas 98.5 5E-07 1.7E-11 96.6 11.7 130 210-342 19-165 (434)
45 1qe0_A Histidyl-tRNA synthetas 98.5 2E-07 6.9E-12 99.1 8.6 129 210-341 15-165 (420)
46 1evl_A Threonyl-tRNA synthetas 98.5 2.4E-07 8.3E-12 98.1 9.1 127 210-341 29-181 (401)
47 4e51_A Histidine--tRNA ligase; 98.5 3E-07 1E-11 99.4 9.8 131 210-343 45-196 (467)
48 3rac_A Histidine-tRNA ligase; 98.5 5.1E-07 1.7E-11 94.8 10.7 131 211-344 37-191 (373)
49 2i4l_A Proline-tRNA ligase; al 98.4 3.4E-07 1.1E-11 98.8 9.2 107 209-316 65-189 (458)
50 1h4v_B Histidyl-tRNA synthetas 98.4 1.2E-06 4.1E-11 93.2 12.0 128 211-341 17-165 (421)
51 3pco_A Phenylalanyl-tRNA synth 98.4 8.1E-07 2.8E-11 91.4 9.0 114 216-330 111-236 (327)
52 4g85_A Histidine-tRNA ligase, 98.4 8.7E-07 3E-11 96.9 9.8 132 210-343 80-226 (517)
53 1htt_A Histidyl-tRNA synthetas 98.3 1.3E-06 4.4E-11 92.9 10.7 128 211-341 18-166 (423)
54 4g84_A Histidine--tRNA ligase, 98.3 2.3E-06 7.7E-11 92.1 11.9 130 210-342 27-172 (464)
55 2dq3_A Seryl-tRNA synthetase; 98.2 2.2E-06 7.5E-11 91.5 8.9 115 210-328 171-313 (425)
56 1nyr_A Threonyl-tRNA synthetas 98.2 2E-06 6.8E-11 96.6 8.8 130 209-342 269-425 (645)
57 3l4g_A Phenylalanyl-tRNA synth 98.2 2E-06 6.7E-11 93.1 8.4 48 281-328 349-398 (508)
58 1hc7_A Prolyl-tRNA synthetase; 98.2 3.8E-06 1.3E-10 91.0 10.2 113 211-323 44-177 (477)
59 3a32_A Probable threonyl-tRNA 98.2 3.4E-06 1.2E-10 91.3 9.2 128 211-342 49-209 (471)
60 1nj8_A Proline-tRNA synthetase 98.2 6.5E-06 2.2E-10 88.7 11.2 119 210-328 37-185 (459)
61 2j3l_A Prolyl-tRNA synthetase; 98.2 4.5E-06 1.5E-10 92.3 10.1 106 210-316 46-169 (572)
62 1qf6_A THRRS, threonyl-tRNA sy 98.2 3.7E-06 1.3E-10 94.3 9.4 127 210-341 270-422 (642)
63 3uh0_A Threonyl-tRNA synthetas 98.1 8.6E-06 2.9E-10 87.8 9.5 118 210-328 63-209 (460)
64 1nj1_A PROR, proline-tRNA synt 98.0 1.1E-05 3.8E-10 87.8 9.1 110 210-320 70-202 (501)
65 4hvc_A Bifunctional glutamate/ 98.0 1.3E-05 4.6E-10 87.3 9.2 115 210-324 60-196 (519)
66 3ial_A Prolyl-tRNA synthetase; 98.0 6.1E-06 2.1E-10 89.9 6.5 128 210-337 54-207 (518)
67 2dq0_A Seryl-tRNA synthetase; 98.0 1.8E-05 6.3E-10 85.0 10.0 113 210-323 192-322 (455)
68 1ses_A Seryl-tRNA synthetase; 98.0 1.5E-05 5.1E-10 84.9 8.8 112 210-325 165-299 (421)
69 1wle_A Seryl-tRNA synthetase; 97.9 5E-05 1.7E-09 82.4 12.0 116 210-326 218-356 (501)
70 12as_A Asparagine synthetase; 97.9 2.2E-05 7.5E-10 79.2 8.4 118 211-328 5-140 (330)
71 1usy_A ATP phosphoribosyltrans 97.9 1.7E-05 5.7E-10 79.8 7.4 116 218-343 7-133 (275)
72 3vbb_A Seryl-tRNA synthetase, 97.8 1.8E-05 6.3E-10 85.8 5.9 100 210-309 200-328 (522)
73 3qne_A Seryl-tRNA synthetase, 97.7 8.6E-05 2.9E-09 79.9 9.7 115 209-326 183-321 (485)
74 3lss_A Seryl-tRNA synthetase; 97.7 4.3E-05 1.5E-09 82.3 7.0 114 209-325 206-343 (484)
75 3err_A Fusion protein of micro 97.7 0.00013 4.3E-09 79.9 10.7 114 210-327 274-410 (536)
76 1ati_A Glycyl-tRNA synthetase; 97.6 9E-05 3.1E-09 80.7 8.2 30 211-240 39-70 (505)
77 2cja_A Seryl-tRNA synthetase; 97.6 3.7E-05 1.3E-09 83.7 4.5 115 210-325 230-393 (522)
78 2du3_A O-phosphoseryl-tRNA syn 97.4 0.00054 1.8E-08 74.5 10.3 48 281-328 207-257 (534)
79 2du7_A O-phosphoseryl-tRNA syn 97.3 0.0011 3.8E-08 72.1 11.6 48 281-328 219-269 (549)
80 3cmq_A Phenylalanyl-tRNA synth 97.2 0.0006 2E-08 72.4 8.7 93 217-310 53-163 (415)
81 2odr_B Phosphoseryl-tRNA synth 97.2 0.00035 1.2E-08 76.7 6.7 68 261-328 200-276 (648)
82 2odr_A Phosphoseryl-tRNA synth 97.2 0.00037 1.2E-08 76.6 6.7 68 261-328 200-276 (665)
83 2odr_D Phosphoseryl-tRNA synth 97.2 0.00039 1.3E-08 76.6 6.7 68 261-328 200-276 (685)
84 2odr_C Phosphoseryl-tRNA synth 97.2 0.00042 1.4E-08 76.5 6.7 48 281-328 226-276 (701)
85 2k50_A Replication factor A re 97.0 0.0037 1.3E-07 54.0 10.2 81 89-176 15-105 (115)
86 2zt5_A Glycyl-tRNA synthetase; 97.0 0.00079 2.7E-08 75.9 6.7 30 211-240 101-131 (693)
87 3mf2_A BLL0957 protein; aminoa 96.8 0.0015 5.2E-08 67.1 6.7 117 210-328 63-217 (346)
88 1g5h_A Mitochondrial DNA polym 96.6 0.00097 3.3E-08 71.6 3.9 114 211-325 62-214 (454)
89 3kf6_A Protein STN1; OB fold, 96.5 0.029 9.8E-07 51.6 12.1 79 91-174 48-127 (159)
90 3ikl_A DNA polymerase subunit 96.4 0.0054 1.8E-07 65.6 7.9 103 211-323 104-222 (459)
91 4gop_B Putative uncharacterize 96.3 0.024 8.3E-07 50.5 10.3 79 91-174 37-115 (136)
92 3dm3_A Replication factor A; p 96.1 0.051 1.7E-06 46.3 11.0 79 90-177 14-101 (105)
93 3kdf_D Replication protein A 3 96.0 0.036 1.2E-06 49.1 10.0 78 91-174 32-110 (132)
94 3e0e_A Replication protein A; 96.0 0.062 2.1E-06 45.0 10.7 78 90-177 11-97 (97)
95 2rhq_B Phenylalanyl-tRNA synth 95.9 0.019 6.5E-07 65.7 9.7 112 215-328 496-632 (795)
96 3l4g_B Phenylalanyl-tRNA synth 95.9 0.025 8.7E-07 62.5 10.2 112 216-328 395-522 (589)
97 3ig2_A Phenylalanyl-tRNA synth 95.5 0.032 1.1E-06 53.5 8.0 112 216-328 8-151 (213)
98 3ica_A Phenylalanyl-tRNA synth 95.5 0.046 1.6E-06 52.4 9.0 113 215-328 7-151 (213)
99 1nnx_A Protein YGIW; structura 95.2 0.1 3.4E-06 44.9 9.2 74 89-175 36-109 (109)
100 3au7_A TIAS, putative uncharac 94.7 0.21 7.2E-06 52.3 12.1 77 90-176 284-362 (402)
101 2pi2_A Replication protein A 3 93.2 0.39 1.3E-05 47.7 10.2 78 91-174 72-150 (270)
102 2hpi_A DNA polymerase III alph 92.0 0.2 6.8E-06 59.5 7.1 80 89-176 1041-1124(1220)
103 1b7y_B Phers, protein (phenyla 91.5 0.55 1.9E-05 53.5 9.8 106 214-328 491-620 (785)
104 1ynx_A Replication factor-A pr 91.3 0.36 1.2E-05 41.5 6.3 79 92-177 16-110 (114)
105 2kbn_A Conserved protein; nucl 90.8 1.2 4.1E-05 37.8 9.1 78 90-176 15-94 (109)
106 2k75_A Uncharacterized protein 90.7 1.5 5.1E-05 37.1 9.5 76 92-181 15-98 (106)
107 1o7i_A SSB, SSO2364, single st 89.4 2.4 8.3E-05 36.4 10.0 74 92-176 14-96 (119)
108 3kf8_A Protein STN1; OB fold; 89.2 2 6.8E-05 41.2 10.0 80 91-176 86-185 (220)
109 1jmc_A Protein (replication pr 89.1 0.95 3.2E-05 43.8 8.0 79 92-177 20-114 (246)
110 3kdf_A Replication protein A 1 86.2 3.8 0.00013 35.5 9.2 69 89-176 21-90 (121)
111 3tqy_A Single-stranded DNA-bin 83.2 5.6 0.00019 36.0 9.4 79 92-176 10-115 (158)
112 3fhw_A Primosomal replication 81.8 13 0.00046 31.8 10.7 55 120-181 48-104 (115)
113 3pco_B Phenylalanyl-tRNA synth 81.2 3 0.0001 47.6 8.2 109 218-328 495-628 (795)
114 3vdy_A SSB, single-stranded DN 80.7 6.8 0.00023 33.3 8.5 79 92-176 7-109 (116)
115 3f2b_A DNA-directed DNA polyme 79.9 11 0.00037 44.1 12.3 81 91-175 18-103 (1041)
116 1txy_A Primosomal replication 79.2 19 0.00065 29.9 10.7 49 121-175 50-102 (104)
117 2vw9_A Single-stranded DNA bin 75.7 11 0.00037 33.1 8.4 50 120-175 50-107 (134)
118 4gop_C Putative uncharacterize 75.1 5.3 0.00018 42.2 7.4 78 92-176 15-108 (444)
119 2rhq_A Phenylalanyl-tRNA synth 74.8 2.2 7.4E-05 42.7 4.1 61 428-488 55-123 (294)
120 1z9f_A Single-strand binding p 73.0 12 0.00042 33.6 8.3 79 92-176 18-122 (153)
121 4gop_A Putative uncharacterize 71.8 11 0.00039 32.1 7.4 51 89-156 17-68 (114)
122 2pi2_E Replication protein A 1 71.6 23 0.00077 31.5 9.5 69 89-176 42-111 (142)
123 1qvc_A Single stranded DNA bin 65.8 30 0.001 30.6 9.2 78 92-175 7-114 (145)
124 3mxn_B RECQ-mediated genome in 65.2 55 0.0019 29.2 10.4 72 91-175 59-130 (150)
125 3k8a_A Putative primosomal rep 65.0 40 0.0014 28.0 9.3 45 121-173 55-101 (103)
126 3ulp_A Single-strand binding p 63.7 30 0.001 29.6 8.6 78 92-175 8-119 (124)
127 3ull_A DNA binding protein; DN 63.5 27 0.00091 30.3 8.2 80 92-176 16-127 (132)
128 2i4l_A Proline-tRNA ligase; al 62.3 5.4 0.00018 42.3 4.1 34 423-456 65-98 (458)
129 1evl_A Threonyl-tRNA synthetas 61.0 6 0.0002 41.0 4.1 34 423-456 28-61 (401)
130 1gm5_A RECG; helicase, replica 60.4 7.5 0.00026 44.2 5.1 77 89-173 164-246 (780)
131 1wjj_A Hypothetical protein F2 60.1 42 0.0014 29.9 8.9 58 108-175 62-119 (145)
132 2k52_A Uncharacterized protein 58.4 38 0.0013 26.4 7.6 63 94-167 8-70 (80)
133 4g84_A Histidine--tRNA ligase, 57.7 6.9 0.00024 41.2 4.0 35 422-456 25-59 (464)
134 1j6q_A Cytochrome C maturation 57.6 95 0.0032 27.3 10.7 75 88-179 30-109 (136)
135 1z7m_A ATP phosphoribosyltrans 57.4 7.5 0.00026 39.6 4.1 34 423-456 34-67 (344)
136 2fxq_A Single-strand binding p 56.4 32 0.0011 33.5 8.3 78 91-175 129-229 (264)
137 3rac_A Histidine-tRNA ligase; 55.7 7.9 0.00027 40.0 3.9 32 425-456 37-68 (373)
138 1qe0_A Histidyl-tRNA synthetas 55.5 6.8 0.00023 40.7 3.4 34 423-456 14-47 (420)
139 3dsq_A Pyrrolysyl-tRNA synthet 54.7 7.3 0.00025 38.8 3.3 28 429-456 74-101 (288)
140 3fhw_A Primosomal replication 54.6 19 0.00064 30.9 5.4 41 355-395 62-104 (115)
141 1sr3_A APO-CCME; OB fold, beta 54.1 1.1E+02 0.0039 26.8 10.5 75 88-179 26-104 (136)
142 3od1_A ATP phosphoribosyltrans 53.8 9.8 0.00033 39.7 4.3 34 423-456 22-55 (400)
143 1wu7_A Histidyl-tRNA synthetas 53.6 9.5 0.00032 39.9 4.2 34 423-456 18-51 (434)
144 1htt_A Histidyl-tRNA synthetas 53.3 9.3 0.00032 39.7 4.1 34 423-456 16-49 (423)
145 1se8_A Single-strand binding p 53.0 50 0.0017 32.9 9.2 77 92-175 131-233 (301)
146 2dq3_A Seryl-tRNA synthetase; 53.0 10 0.00035 39.9 4.3 34 423-456 170-203 (425)
147 4g85_A Histidine-tRNA ligase, 52.7 7.5 0.00025 41.8 3.3 35 422-456 78-112 (517)
148 3lgj_A Single-stranded DNA-bin 52.3 59 0.002 29.6 8.8 79 92-176 25-135 (169)
149 1h4v_B Histidyl-tRNA synthetas 52.0 8.5 0.00029 40.0 3.5 34 423-456 15-48 (421)
150 1luz_A Protein K3, protein K2; 51.8 45 0.0015 26.7 7.1 72 89-169 11-83 (88)
151 1ati_A Glycyl-tRNA synthetase; 51.2 9.8 0.00033 40.9 3.9 33 424-456 38-72 (505)
152 4e51_A Histidine--tRNA ligase; 51.1 10 0.00035 40.3 4.0 34 423-456 44-77 (467)
153 3net_A Histidyl-tRNA synthetas 50.5 10 0.00036 40.2 3.9 34 423-456 24-57 (465)
154 2k4k_A GSP13, general stress p 50.4 17 0.00058 31.6 4.6 67 94-167 10-76 (130)
155 3koj_A Uncharacterized protein 50.3 1.1E+02 0.0038 25.6 9.7 73 92-170 13-106 (108)
156 3dm3_A Replication factor A; p 49.6 20 0.00067 30.0 4.8 37 356-392 66-102 (105)
157 3lc0_A Histidyl-tRNA synthetas 49.5 12 0.00041 39.7 4.1 34 423-456 41-74 (456)
158 1qf6_A THRRS, threonyl-tRNA sy 49.2 11 0.00039 41.7 4.1 34 423-456 269-302 (642)
159 1kl9_A Eukaryotic translation 49.1 28 0.00096 32.2 6.1 57 89-152 15-71 (182)
160 1ses_A Seryl-tRNA synthetase; 48.4 13 0.00046 38.9 4.3 74 410-488 156-233 (421)
161 1nyr_A Threonyl-tRNA synthetas 48.4 12 0.0004 41.5 4.1 34 423-456 269-302 (645)
162 1se8_A Single-strand binding p 48.1 61 0.0021 32.3 8.9 79 92-176 7-112 (301)
163 3pgz_A Single-stranded DNA-bin 48.0 67 0.0023 29.9 8.6 80 92-176 28-138 (193)
164 1b7y_A Phers, protein (phenyla 47.6 11 0.00037 38.7 3.3 27 429-455 104-130 (350)
165 1hc7_A Prolyl-tRNA synthetase; 47.4 14 0.00047 39.5 4.3 33 424-456 43-75 (477)
166 4gs3_A Single-stranded DNA-bin 47.4 1.1E+02 0.0038 25.6 9.1 76 91-174 12-106 (107)
167 3a32_A Probable threonyl-tRNA 46.6 14 0.00047 39.3 4.1 33 424-456 48-80 (471)
168 2j3l_A Prolyl-tRNA synthetase; 46.4 14 0.00046 40.3 4.1 34 423-456 45-78 (572)
169 2fxq_A Single-strand binding p 45.4 73 0.0025 30.9 8.9 79 92-176 7-110 (264)
170 3vbb_A Seryl-tRNA synthetase, 45.0 16 0.00055 39.4 4.3 34 423-456 199-232 (522)
171 3lss_A Seryl-tRNA synthetase; 44.3 17 0.00057 39.0 4.2 63 422-488 205-277 (484)
172 3uh0_A Threonyl-tRNA synthetas 44.0 16 0.00053 38.9 4.0 34 423-456 62-96 (460)
173 2b29_A Replication protein A 7 44.0 99 0.0034 26.5 8.5 63 108-175 43-107 (123)
174 3afp_A Single-stranded DNA-bin 42.7 99 0.0034 27.9 8.7 60 92-157 6-85 (168)
175 2eqs_A ATP-dependent RNA helic 42.4 18 0.00062 29.9 3.4 59 89-152 12-70 (103)
176 2dq0_A Seryl-tRNA synthetase; 42.3 19 0.00065 38.2 4.3 66 423-488 191-260 (455)
177 3err_A Fusion protein of micro 40.9 20 0.00069 38.9 4.3 61 422-488 272-342 (536)
178 3qne_A Seryl-tRNA synthetase, 40.5 21 0.0007 38.3 4.2 34 423-456 183-216 (485)
179 1wle_A Seryl-tRNA synthetase; 39.8 22 0.00075 38.2 4.3 63 423-488 217-290 (501)
180 1nj8_A Proline-tRNA synthetase 39.4 21 0.00072 37.8 4.1 34 423-456 36-69 (459)
181 3eiv_A Single-stranded DNA-bin 39.1 1.6E+02 0.0055 27.5 9.7 75 92-172 6-108 (199)
182 2zt5_A Glycyl-tRNA synthetase; 38.1 16 0.00055 40.9 3.0 33 424-456 100-133 (693)
183 3ial_A Prolyl-tRNA synthetase; 37.6 23 0.00079 38.2 4.1 34 423-456 53-86 (518)
184 4hvc_A Bifunctional glutamate/ 37.5 23 0.00079 38.2 4.1 34 423-456 59-92 (519)
185 2khi_A 30S ribosomal protein S 36.9 32 0.0011 29.0 4.1 56 89-152 30-85 (115)
186 12as_A Asparagine synthetase; 36.4 35 0.0012 34.4 4.8 65 424-488 4-80 (330)
187 2a19_A EIF-2- alpha, eukaryoti 36.4 31 0.0011 31.6 4.2 54 94-152 18-71 (175)
188 1nj1_A PROR, proline-tRNA synt 36.0 21 0.00074 38.2 3.6 33 423-456 69-101 (501)
189 3ull_A DNA binding protein; DN 35.4 32 0.0011 29.8 4.0 38 353-390 82-127 (132)
190 3vdy_A SSB, single-stranded DN 34.2 24 0.00083 29.8 2.9 37 354-390 65-109 (116)
191 1xjv_A Protection of telomeres 33.4 2.4E+02 0.0081 27.6 10.6 71 89-166 14-91 (294)
192 2khj_A 30S ribosomal protein S 33.2 16 0.00055 30.5 1.6 55 89-152 31-85 (109)
193 1fr3_A MOP, molybdate/tungstat 32.5 1.4E+02 0.0048 21.6 7.1 50 94-152 8-57 (67)
194 3k8a_A Putative primosomal rep 32.1 53 0.0018 27.3 4.7 34 354-387 66-101 (103)
195 1txy_A Primosomal replication 31.2 43 0.0015 27.7 4.0 37 353-389 62-102 (104)
196 2cqo_A Nucleolar protein of 40 30.8 14 0.00047 31.7 0.8 56 89-152 22-77 (119)
197 1z9f_A Single-strand binding p 30.3 48 0.0016 29.6 4.3 38 353-390 77-122 (153)
198 1usy_A ATP phosphoribosyltrans 29.8 30 0.001 33.8 3.2 22 435-456 12-33 (275)
199 1wi5_A RRP5 protein homolog; S 29.1 47 0.0016 28.0 3.9 54 89-152 21-77 (119)
200 2vw9_A Single-stranded DNA bin 28.4 48 0.0017 28.8 4.0 35 355-389 65-107 (134)
201 1v1q_A Primosomal replication 28.2 96 0.0033 27.1 5.8 78 92-175 21-119 (134)
202 3tqy_A Single-stranded DNA-bin 27.4 35 0.0012 30.7 2.9 38 353-390 70-115 (158)
203 2kct_A Cytochrome C-type bioge 25.9 2.7E+02 0.0092 22.7 9.9 74 88-177 6-86 (94)
204 3m7n_A Putative uncharacterize 25.6 54 0.0019 29.9 3.9 55 94-152 60-121 (179)
205 3e0e_A Replication protein A; 25.6 73 0.0025 25.9 4.4 34 356-390 63-96 (97)
206 1yfn_A Stringent starvation pr 23.8 1E+02 0.0035 26.4 4.9 52 427-485 9-61 (118)
207 1ou8_A Stringent starvation pr 22.0 1.1E+02 0.0038 25.9 4.7 51 427-484 8-59 (111)
208 1gut_A Mopii, molybdate bindin 21.9 2.3E+02 0.008 20.5 6.5 50 94-152 8-58 (68)
209 2cja_A Seryl-tRNA synthetase; 21.6 46 0.0016 35.9 2.9 34 423-456 229-263 (522)
210 1g5h_A Mitochondrial DNA polym 21.0 60 0.002 34.3 3.6 33 424-456 61-95 (454)
211 3en2_A Probable primosomal rep 20.2 1.6E+02 0.0055 24.3 5.4 45 120-171 49-95 (101)
No 1
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=1.2e-76 Score=647.88 Aligned_cols=292 Identities=69% Similarity=1.179 Sum_probs=273.7
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCCceEEEEEEeC
Q psy11418 38 CLTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGE 117 (553)
Q Consensus 38 ~~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~ 117 (553)
.+++++.+.|++|+++|++.|++|||++|.+++++++++++|.++..++...+++|+|+|||+++|.+|+|++|++|+|+
T Consensus 3 ~~~~~~~~~r~~k~~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~ 82 (521)
T 3bju_A 3 VDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGE 82 (521)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCSSCSCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEET
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCCcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEEC
Confidence 46788999999999999999999999999999999999999998877666678889999999999999988999999999
Q ss_pred CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhccc
Q psy11418 118 GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQR 197 (553)
Q Consensus 118 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R 197 (553)
++.||||++++...+++.|..+.+.|++||+|+|+|++.++++|++||.|++|++|++|+.|+|.+++++.++++|+++|
T Consensus 83 sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~ge~ei~~~~i~~l~~~~~~lP~~~~~~~~~e~r~r~R 162 (521)
T 3bju_A 83 GVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQR 162 (521)
T ss_dssp TEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCCSCCCCC----CCHHHHHHCH
T ss_pred CEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecCCCCEEEEEeEEEEeecCCCCCCCccccccChhhhhhhh
Confidence 99999999887542455675556789999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHc
Q psy11418 198 YLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG 277 (553)
Q Consensus 198 ~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~ 277 (553)
|||||+|+.++++|++||+|++++|+||.++||+||+||+|++++|||+|+||.|++|+||+++||+||||||||+|+++
T Consensus 163 yLdLr~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~ 242 (521)
T 3bju_A 163 YLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVG 242 (521)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEEETTTTEEEEECSCSHHHHHHHHHT
T ss_pred hhhHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCceeeccCCCccccceeeecccCCcceEeeCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhccc
Q psy11418 278 GLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 278 g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~ 329 (553)
|++||||||||||||+++++|||||||||+|+||+|++|+|+++|+||++++
T Consensus 243 g~~rVyeig~~FR~E~~~trH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~ 294 (521)
T 3bju_A 243 GIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMV 294 (521)
T ss_dssp TCCEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHH
T ss_pred CcCceEEEEcceeCCCCCCccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999994
No 2
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=7.1e-76 Score=638.82 Aligned_cols=288 Identities=41% Similarity=0.701 Sum_probs=265.3
Q ss_pred CChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCccccc-CCcEEEEEEEEEeeecCCCceEEEEEEe
Q psy11418 38 CLTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVL-ENVTLSVAGRVHAIRESGTKLMFYDLRG 116 (553)
Q Consensus 38 ~~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~v~Gri~~~R~~g~kl~Fi~l~d 116 (553)
.+++++++.|++|+++|++.|+ |||++|.+++++.+++++|.++.+++.. .|++|+|+|||+++|.+| |++|++|+|
T Consensus 34 ~~~~~~~~~r~~k~~~l~~~g~-~yp~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~G-k~~Fi~LrD 111 (529)
T 4ex5_A 34 ADENQIVAERRDKLRALRDQGI-AYPNDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMG-KASFATVQD 111 (529)
T ss_dssp --CHHHHHHHHHHHHHHHHTSC-SSCCCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHcCC-CCCCCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCC-CeEEEEEEe
Confidence 5789999999999999999998 9999999999999999999887654322 378999999999999999 899999999
Q ss_pred CCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhcc
Q psy11418 117 EGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQ 196 (553)
Q Consensus 117 ~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~ 196 (553)
+++.||||++++.. +++.| +..+.|+.||+|+|+|+|.++++|++||.+++|+||++|+.|+|.++++++|+|+||++
T Consensus 112 ~sg~iQvv~~~~~~-~~~~~-~~~~~l~~gd~V~V~G~v~~t~~gelel~~~~i~vLs~a~~plP~k~~~l~d~e~r~r~ 189 (529)
T 4ex5_A 112 GSGQIQFFVTPADV-GAETY-DAFKKWDLGDIVAARGVLFRTNKGELSVKCTQLRLLAKALRPLPDKFHGLADQETRYRQ 189 (529)
T ss_dssp SSCEEEEEECHHHH-CHHHH-HHHHTCCTTCEEEEEEEEEECTTSCEEEEEEEEEEEECCSSCCCC------CTTHHHHT
T ss_pred CCeeEEEEEECCcC-CHHHH-HHHhcCCCCCEEEEEEEEEEcCCCcEEEEEEEEEEEecCCCCCCccccCCcChhhhhhh
Confidence 99999999988654 34455 56678999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHH
Q psy11418 197 RYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVV 276 (553)
Q Consensus 197 R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~ 276 (553)
||||||+|+.++++|++||+|+++||+||+++||+||+||+|++++|||+++||.|++|++|+++||+||||||||+|+|
T Consensus 190 RyLdLr~~~~~~~~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~gGA~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v 269 (529)
T 4ex5_A 190 RYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIV 269 (529)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHH
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccCCCCcccccccccccCCcceecccCHHHHHHHHHh
Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhccc
Q psy11418 277 GGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 277 ~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~ 329 (553)
+|++||||||||||||+++++|||||||||||++|+|++|+|+++|+||++++
T Consensus 270 ~G~~rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~ 322 (529)
T 4ex5_A 270 GGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAA 322 (529)
T ss_dssp TTCSEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHH
T ss_pred cCCCcEEEeehheecCCCCCCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999993
No 3
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=4.8e-74 Score=624.46 Aligned_cols=288 Identities=44% Similarity=0.754 Sum_probs=262.9
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCccccc-CCcEEEEEEEEEeeecCCCceEEEEEEeC
Q psy11418 39 LTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVL-ENVTLSVAGRVHAIRESGTKLMFYDLRGE 117 (553)
Q Consensus 39 ~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~ 117 (553)
+.+++.+.|++|+++|+ .|++|||++|.+++++.+++++|.++..++.. .|++|+|+|||+++|.+| |++|++|+|+
T Consensus 13 ~~~~~~~~r~~k~~~l~-~g~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g-k~~F~~LrD~ 90 (504)
T 1e1o_A 13 DFNDELRNRREKLAALR-QQGVAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG-KASFVTLQDV 90 (504)
T ss_dssp HHHHHHHHHHHHHHHHH-HHSCSSCCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEET
T ss_pred ChhHHHHHHHHHHHHHH-hCCCCCCCCCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCC-CcEEEEEEEC
Confidence 46789999999999999 99999999999999999999999877543221 278899999999999999 9999999999
Q ss_pred CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhccc
Q psy11418 118 GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQR 197 (553)
Q Consensus 118 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R 197 (553)
++.||||++++.. +++.|.+..+.|+.||+|+|+|+|.++++|++||.|++|+||++|+.|+|.+++++.++++|+++|
T Consensus 91 sg~iQvv~~~~~~-~~~~~~~~~~~l~~g~~V~V~G~v~~~~~ge~ei~~~~i~vl~~a~~plP~k~~~~~~~e~r~r~R 169 (504)
T 1e1o_A 91 GGRIQLYVARDSL-PEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQR 169 (504)
T ss_dssp TEEEEEEEETTTS-STTHHHHTGGGCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCSSCCCC-------TTHHHHTH
T ss_pred CeeEEEEEECCcC-CHHHHHHHHhcCCCCCEEEEEEEEEecCCceEEEEEEEEEEecccCCCCCccccCCcChhhhhhcc
Confidence 9999999988754 344564256889999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHc
Q psy11418 198 YLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG 277 (553)
Q Consensus 198 ~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~ 277 (553)
|||||+|+.++++|++||+|++++|+||+++||+||+||+|++++|||+|+||.|+++++|+++|||+|||||+|+|+++
T Consensus 170 yLdL~~~~~~~~~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~~~~~~~~~yL~~SpqLylk~L~v~ 249 (504)
T 1e1o_A 170 YLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVG 249 (504)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTEEEEECSCSHHHHHHHHHH
T ss_pred chhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEeccCCCCceEEeccCHHHHHHHHhhc
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhccc
Q psy11418 278 GLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 278 g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~ 329 (553)
|++||||||||||||+++++|||||||||+|++|+|++|+|+++|+||++++
T Consensus 250 G~~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~dlm~l~E~li~~~~ 301 (504)
T 1e1o_A 250 GFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLA 301 (504)
T ss_dssp TCCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEcccccCCCCCccccCceeeeeeeecCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999994
No 4
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=2.1e-73 Score=618.40 Aligned_cols=288 Identities=46% Similarity=0.748 Sum_probs=265.2
Q ss_pred ChhHHHHHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHhCCCCccccc-CCcEEEEEEEEEeeecCCCceEEEEEEeC
Q psy11418 39 LTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVL-ENVTLSVAGRVHAIRESGTKLMFYDLRGE 117 (553)
Q Consensus 39 ~~~~~~~~R~~kl~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~ 117 (553)
+.+++.+.|++|+++|++.|++|||++|.+++++.+++++|.++..++.. .|++|+|+|||+++|.+| |++|++|+|+
T Consensus 4 ~~~~~~~~r~~k~~~l~~~g~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g-k~~F~~LrD~ 82 (493)
T 3a74_A 4 ELNDQLRVRREKLKKIEELGVDPFGKRFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMG-KAGFAHIQDV 82 (493)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCCTTCCCCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEET
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCCCCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCC-CcEEEEEEEC
Confidence 57889999999999999999999999999999999999999877643221 378899999999999999 8999999999
Q ss_pred CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhccc
Q psy11418 118 GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQR 197 (553)
Q Consensus 118 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R 197 (553)
++.||||++++.. +++.| +..+.|+.||+|+|+|++.++++|++||.|++|+||++|+.|+|.+++++.++++|+++|
T Consensus 83 sg~iQvv~~~~~~-~~~~~-~~~~~l~~g~~v~V~G~v~~~~~ge~ei~~~~i~vl~~~~~plP~k~~~~~~~e~r~r~R 160 (493)
T 3a74_A 83 TGQIQIYVRQDDV-GEQQY-ELFKISDLGDIVGVRGTMFKTKVGELSIKVSSYEFLTKALRPLPEKYHGLKDIEQRYRQR 160 (493)
T ss_dssp TEEEEEEEEHHHH-HHHHH-HHHHHCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCSSCCCCC-----CHHHHHHTH
T ss_pred CEeEEEEEECCcC-CHHHH-HHHhcCCCCCEEEEEEEEEeCCCCcEEEEEEEEEEcccccCCCCccccCCCCHhhhhhcc
Confidence 9999999987643 23344 345789999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHc
Q psy11418 198 YLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG 277 (553)
Q Consensus 198 ~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~ 277 (553)
|||||+|+.++++|++||.|++++|+||.++||+||+||+|++++||++|+||.|+++++|+++|||+|||||+|+|+++
T Consensus 161 yldL~~~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~~~~~~~~~yLr~SpqLylk~l~v~ 240 (493)
T 3a74_A 161 YLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELHLKRLIVG 240 (493)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHT
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEecccCCCceeEEecCHHHHHHHHhhc
Confidence 99999899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhccc
Q psy11418 278 GLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 278 g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~ 329 (553)
|++|||+||||||||+++++|+|||||||+|++|+|++|+|+++|+||++++
T Consensus 241 G~~rVyeig~~FR~E~~~~rH~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~ 292 (493)
T 3a74_A 241 GLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAYADFRDIMKLTENLIAHIA 292 (493)
T ss_dssp TCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHH
T ss_pred ccCceEEECccccCCCCCcccCCceeEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999994
No 5
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=1.5e-57 Score=503.67 Aligned_cols=236 Identities=26% Similarity=0.482 Sum_probs=215.6
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc---------c
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---------K 159 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t---------~ 159 (553)
.|++|+|+|||+++|.+| |++|++|||++|.+|||++.+. .+.| +.++.|+.||+|.|+|+|.++ +
T Consensus 14 ~g~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~~---~~~~-~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~ 88 (585)
T 1c0a_A 14 VGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVFFDPDR---ADAL-KLASELRNEFCIQVTGTVRARDEKNINRDMA 88 (585)
T ss_dssp TTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECGGG---HHHH-HHHTTCCTTCEEEEEEEEEECCTTTCCTTST
T ss_pred CCCEEEEEEEEEEEecCC-CcEEEEEEECCeeEEEEEeCCc---hHHH-HHHhcCCCCCEEEEEeEEEccCcccccccCC
Confidence 477899999999999999 9999999999999999998653 3345 456889999999999999876 5
Q ss_pred CCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceec
Q psy11418 160 KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMN 239 (553)
Q Consensus 160 ~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~ 239 (553)
+|++||.|++++||++|. ++|.+.++..+.++|+++|||||| |+.++++|++||+|++++|+||+++||+||+||+|+
T Consensus 89 ~geiEl~~~~i~vl~~a~-~lP~~~~~~~~~e~Rl~~R~LdLR-~~~~~~~l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~ 166 (585)
T 1c0a_A 89 TGEIEVLASSLTIINRAD-VLPLDSNHVNTEEARLKYRYLDLR-RPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLT 166 (585)
T ss_dssp TTTEEEEEEEEEEEECCC-SCSSCTTSCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSB
T ss_pred CccEEEEEeEEEEEeccC-CCCCCccccCCHhHhhhchHhhhc-CHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEe
Confidence 899999999999999997 678776677889999999999997 999999999999999999999999999999999998
Q ss_pred c-ccCCCCCcceeeccCCCCccee-eeeCHHHHHHHHHHccCCcEEEEccccccCCCCCCccCCcceeeeEeccCCHHHH
Q psy11418 240 M-IAGGATAKPFVTHHNDLNMDLY-MRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDL 317 (553)
Q Consensus 240 ~-~~gga~a~~F~t~~~~~~~~~~-L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~ 317 (553)
. .++| |++|.|+++.++.++| |+||||||||+||++|++||||||||||||+++++|+|||||||+||+|+|++|+
T Consensus 167 ~s~~eG--Ar~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~t~r~pEFT~lE~e~af~d~~dv 244 (585)
T 1c0a_A 167 KATPEG--ARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQV 244 (585)
T ss_dssp CCCSSS--SCCCEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCCHHHH
T ss_pred cCCCCC--CccceecccccCCceEeCccCHHHHHHHHHhcCCCceEEEeceeecCCCCCCcCcccceeeeeecCCCHHHH
Confidence 5 4555 4789999888776665 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCC
Q psy11418 318 MHLTEDLISGRKEDRN 333 (553)
Q Consensus 318 m~~~e~li~~~~~~~~ 333 (553)
|+++|+||+++++.+.
T Consensus 245 m~~~E~li~~i~~~v~ 260 (585)
T 1c0a_A 245 REVMEALVRHLWLEVK 260 (585)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987653
No 6
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=1.7e-57 Score=487.21 Aligned_cols=236 Identities=26% Similarity=0.446 Sum_probs=214.5
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC--CceeEe
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK--GELSII 166 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~--ge~~l~ 166 (553)
.|++|+|+|||+++|.+| |++|++|+|+++.||||++++.. +++.| +..+.|+.||+|+|+|++.++++ |++||.
T Consensus 15 ~g~~V~v~Gwv~~~R~~g-~~~Fi~LrD~~g~iQ~v~~~~~~-~~~~~-~~~~~l~~~~~V~V~G~v~~~~~~~~~~el~ 91 (438)
T 3nem_A 15 NGQKVKVAGWVWEVKDLG-GIKFLWIRDRDGIVQITAPKKKV-DPELF-KLIPKLRSEDVVAVEGVVNFTPKAKLGFEIL 91 (438)
T ss_dssp TTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEETTTS-CHHHH-HHGGGCCTTCEEEEEEEEEECTTSTTSEEEE
T ss_pred CCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCCcC-CHHHH-HHHhcCCCCCEEEEEEEEEeCCCCCCcEEEE
Confidence 578999999999999999 89999999999999999998754 44445 56788999999999999998876 999999
Q ss_pred eeeEEEeccCCCCCCCCCCC--CCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccc--c
Q psy11418 167 PKKLTLLSPCLHMLPHMHFG--VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI--A 242 (553)
Q Consensus 167 ~~~i~il~~~~~~lP~~~~~--l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~--~ 242 (553)
+++++||++|..++|.++++ ..+.|+|+++|||||| |+.++++|++||+|++++|+||.++||+||+||+|+++ +
T Consensus 92 ~~~i~vl~~~~~~lP~~~~~~~~~~~e~r~~~R~Ldlr-~~~~~~~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~e 170 (438)
T 3nem_A 92 PEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLR-RPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATE 170 (438)
T ss_dssp EEEEEEEECBCSSCSSCTTSSSCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSS
T ss_pred EEEEEEEecCCCCCCCCccccccCCHHHHhhchHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCCC
Confidence 99999999999999988766 3689999999999995 99999999999999999999999999999999999754 4
Q ss_pred CCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCC-HHHHHHH
Q psy11418 243 GGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYAD-YNDLMHL 320 (553)
Q Consensus 243 gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~-~~~~m~~ 320 (553)
||+. .|.+ +++++++||++|||||+|+|+++|++|||+||||||||++++ ||+|||||||||++|+| ++|+|++
T Consensus 171 g~~~--~f~~--~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~~~~d~m~~ 246 (438)
T 3nem_A 171 GGTE--LFPM--KYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSF 246 (438)
T ss_dssp CSSS--CCEE--EETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCSSHHHHHHH
T ss_pred CCcc--ceeE--eeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCCCcccccceeeeeeeeccCccHHHHHHH
Confidence 5554 4543 368999999999999999999999999999999999999997 89999999999999999 9999999
Q ss_pred HHHHHhcccccC
Q psy11418 321 TEDLISGRKEDR 332 (553)
Q Consensus 321 ~e~li~~~~~~~ 332 (553)
+|+||+++++.+
T Consensus 247 ~E~li~~~~~~v 258 (438)
T 3nem_A 247 LERLVAHAINYV 258 (438)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997543
No 7
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=4.2e-57 Score=498.78 Aligned_cols=236 Identities=25% Similarity=0.456 Sum_probs=213.4
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc-------cCC
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT-------KKG 161 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t-------~~g 161 (553)
.|++|+|+|||+++|.+| |++|++|||++|.||||++.+. + .| +..+.|+.||+|.|+|+|.++ ++|
T Consensus 15 ~g~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~~---~-~~-~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~g 88 (580)
T 1l0w_A 15 VGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQLVAHPAS---P-AY-ATAERVRPEWVVRAKGLVRLRPEPNPRLATG 88 (580)
T ss_dssp TTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECTTS---T-TH-HHHTTCCTTCEEEEEEEEEECSSCCTTSTTT
T ss_pred CCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCCh---h-HH-HHHhcCCCCcEEEEEEEEEcCCCcCccCCCc
Confidence 477899999999999999 9999999999999999998753 1 34 456889999999999999876 589
Q ss_pred ceeEeeeeEEEeccCCCCCCCC--C------CCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEE
Q psy11418 162 ELSIIPKKLTLLSPCLHMLPHM--H------FGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEV 233 (553)
Q Consensus 162 e~~l~~~~i~il~~~~~~lP~~--~------~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV 233 (553)
++||.|++++||++|+ ++|.. . ++..+.++|+++|||||| |+.++++|++||+|++++|+||+++||+||
T Consensus 89 e~Ei~~~~i~vl~~a~-~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR-~~~~~~~l~~Rs~i~~~iR~fl~~~gF~EV 166 (580)
T 1l0w_A 89 RVEVELSALEVLAEAK-TPPFPVDAGWRGEEEKEASEELRLKYRYLDLR-RRRMQENLRLRHRVIKAIWDFLDREGFVQV 166 (580)
T ss_dssp TEEEEEEEEEEEECCC-CCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred cEEEEEeEEEEeccCc-CCCCCcchhccccccccCCHHHhhhhhHHHhc-CHHHHHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 9999999999999997 45532 2 557789999999999997 999999999999999999999999999999
Q ss_pred ecceecc-ccCCCCCcceeeccCCCCccee-eeeCHHHHHHHHHHccCCcEEEEccccccCCCCCCccCCcceeeeEecc
Q psy11418 234 ETPMMNM-IAGGATAKPFVTHHNDLNMDLY-MRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAY 311 (553)
Q Consensus 234 ~TPil~~-~~gga~a~~F~t~~~~~~~~~~-L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~ 311 (553)
+||+|+. .++| |++|.|+++.++.++| |+||||||||+||++|++||||||||||||+++++|+|||||||+||+|
T Consensus 167 eTPiL~~s~~eG--Ar~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~~~r~pEFT~lE~e~af 244 (580)
T 1l0w_A 167 ETPFLTKSTPEG--ARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSF 244 (580)
T ss_dssp CCCSSBCCCSSS--SCCCEEECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSCCSEEEEEEEEEES
T ss_pred eCCEEecCCCCC--CCCccccccccCCceeECccCHHHHHHHHHHhccCCeEEEeceeeCCCCCCCcCCCccceeeeecC
Confidence 9999985 4555 4789999888877766 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcccccCCC
Q psy11418 312 ADYNDLMHLTEDLISGRKEDRNR 334 (553)
Q Consensus 312 ~~~~~~m~~~e~li~~~~~~~~~ 334 (553)
+|++|+|+++|+||+++++.+..
T Consensus 245 ~d~~dvm~~~E~li~~i~~~v~~ 267 (580)
T 1l0w_A 245 VEVEDVLELNERLMAHVFREALG 267 (580)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999886543
No 8
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=2.3e-56 Score=486.27 Aligned_cols=240 Identities=24% Similarity=0.355 Sum_probs=201.4
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc-------C
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-------K 160 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~-------~ 160 (553)
..|++|+|+|||+++|.+| |++|++|||+++.||+|++++...+ +.+.++.+.|+.||+|.|+|+|.+++ +
T Consensus 60 ~~g~~V~v~Gwv~~~R~~g-kl~Fi~LrD~~g~iQ~v~~~~~~~~-~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~ 137 (548)
T 3i7f_A 60 MAEKTVTIRARVQAVRGKG-NMVFLFLRKGIYTCQALVMKSETIS-KEFVQFCQKISAESICDITGIVKAVEKPIEKATQ 137 (548)
T ss_dssp GTTCEEEEEEEEEEEEECS-SEEEEEEEETTEEEEEEEECSSSSC-HHHHHHHHTCCTTEEEEEEEEEEECSSCCTTSSS
T ss_pred cCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEECCCccC-HHHHHHHhCCCCCCEEEEEEEEEeCCcccccCCC
Confidence 4688999999999999999 9999999999999999998743223 34556788999999999999998864 5
Q ss_pred CceeEeeeeEEEeccCCCCCCCCCC-------------------------------------------------------
Q psy11418 161 GELSIIPKKLTLLSPCLHMLPHMHF------------------------------------------------------- 185 (553)
Q Consensus 161 ge~~l~~~~i~il~~~~~~lP~~~~------------------------------------------------------- 185 (553)
|++||++++|+|||+|+.++|.+..
T Consensus 138 ~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~ 217 (548)
T 3i7f_A 138 QDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQ 217 (548)
T ss_dssp CSEEEEEEEEEEEECCCBSCSSCSGGGSCCHHHHHHHHHHTTCC-------------------------------CCCCC
T ss_pred CcEEEEEeEEEEEecCCCCCCCCchhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999997621
Q ss_pred C--CCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceee
Q psy11418 186 G--VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYM 263 (553)
Q Consensus 186 ~--l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L 263 (553)
+ ..+.++|+++|||||| ++.++++|++||+|++++|+||.++||+||+||+|++++++++|++|.+ ++++.++||
T Consensus 218 ~~~~~~~e~rl~~R~LdLR-~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~egga~~F~v--~~~~~~~yL 294 (548)
T 3i7f_A 218 KYVKVSQDTRLDNRMLDLR-TVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEV--KYFDRKAYL 294 (548)
T ss_dssp CCCCCCHHHHHTTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC---------------------CCB
T ss_pred ccccCCHHHhhhchhhccC-CHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCCCCcceeEE--ecCCCceEe
Confidence 1 3578899999999998 8999999999999999999999999999999999998877777899986 679999999
Q ss_pred eeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccC-CHHHHHHHHHHHHhcccccC
Q psy11418 264 RIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYA-DYNDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 264 ~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~-~~~~~m~~~e~li~~~~~~~ 332 (553)
++|||||||+|+++|++|||+||||||||++++ |||||||||||||+|. |++|+|+++|+||+++++.+
T Consensus 295 ~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~ 365 (548)
T 3i7f_A 295 AQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEI 365 (548)
T ss_dssp CSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999975 8999999999999998 79999999999999997654
No 9
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=1.8e-56 Score=481.45 Aligned_cols=235 Identities=19% Similarity=0.296 Sum_probs=208.6
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC-------
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK------- 160 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~------- 160 (553)
..|++|+|+|||+++|.+|++++|++|||+++.||||++++.. . +.+ ....|+.||+|.|+|++.+++.
T Consensus 28 ~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~~-~-~~~--~~~~l~~g~~V~V~G~v~~~~~~~~~~~~ 103 (456)
T 3m4p_A 28 LEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKEL-C-EPE--KVKLLTRECSLEITGRLNAYAGKNHPPEI 103 (456)
T ss_dssp CCSSEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTTT-T-CHH--HHTTCCTTCEEEEEEEEECCCSSSCCCSC
T ss_pred cCCCEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEecccc-h-hhH--HhhcCCCccEEEEEeEEEecCCcccCccc
Confidence 4688999999999999998679999999999999999997543 1 223 2457999999999999987653
Q ss_pred ---CceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecce
Q psy11418 161 ---GELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPM 237 (553)
Q Consensus 161 ---ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPi 237 (553)
|++||.+++++||++|+.++|.++++..+.|+|+++|||||| |+.++++|++||+|++++|+||.++||+||+||+
T Consensus 104 ~t~g~~El~~~~i~vl~~a~~~~~~~~~~~~~~e~r~~~R~LdlR-~~~~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPi 182 (456)
T 3m4p_A 104 ADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIR-SEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPT 182 (456)
T ss_dssp TTBCSSEEEEEEEEEEECCCGGGTTTSCTTCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCS
T ss_pred CCCCcEEEEEeEEEEEecCCCCCcccccccCCHHHHhhchHHhhh-cHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCe
Confidence 899999999999999988788777778899999999999995 9999999999999999999999999999999999
Q ss_pred eccc--cCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCCH
Q psy11418 238 MNMI--AGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYADY 314 (553)
Q Consensus 238 l~~~--~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~~ 314 (553)
|+++ +|| +.+|.+ ++||+++||++|||||||+|++ |++||||||||||||++++ ||||||||||||++|+|+
T Consensus 183 L~~s~~eGg--~~~f~~--~~~~~~~~L~~SpqL~lq~l~~-g~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d~ 257 (456)
T 3m4p_A 183 IVKTQCEGG--STLFKL--QYFNEPAYLTQSSQLYLESVIA-SLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISF 257 (456)
T ss_dssp EEC--------CCCCEE--EETTEEEEECSCCHHHHHTTHH-HHSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCCH
T ss_pred eecCCCCCc--cccccc--cccCCCcccccCHHHHHHHHHh-ccCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCCH
Confidence 9643 444 457854 7899999999999999999875 7999999999999999986 899999999999999999
Q ss_pred HHHHHHHHHHHhcccccC
Q psy11418 315 NDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 315 ~~~m~~~e~li~~~~~~~ 332 (553)
+|+|+++|+||+++++.+
T Consensus 258 ~d~m~~~E~li~~~~~~v 275 (456)
T 3m4p_A 258 EDLLNHLEDLVCTVIDNV 275 (456)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999997543
No 10
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=1.7e-55 Score=472.69 Aligned_cols=233 Identities=18% Similarity=0.292 Sum_probs=201.6
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc-----ccCCc
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK-----TKKGE 162 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~-----t~~ge 162 (553)
..|++|+|+|||+++|.+|++++|++|||+++.||||++.+.. +.|.. . .|+.||+|.|+|++.+ +++|+
T Consensus 9 ~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~~~~---~~~~~-~-~l~~~~~v~v~G~v~~~~~~~~~~g~ 83 (435)
T 2xgt_A 9 HRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLC---QTYDA-L-TVNTECTVEIYGAIKEVPEGKEAPNG 83 (435)
T ss_dssp GTTSEEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEGGGG---SSHHH-H-HCCTTCEEEEEEEEEECC------TT
T ss_pred cCCCEEEEEEEEEEecccCCCcEEEEEEECCceEEEEECCcch---hHHHH-h-cCCCCCEEEEEEEEEecCCCcCCCCc
Confidence 4678999999999999998689999999999999999985431 23432 3 6999999999999987 56899
Q ss_pred eeEeeeeEEEeccCC----CCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEeccee
Q psy11418 163 LSIIPKKLTLLSPCL----HMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMM 238 (553)
Q Consensus 163 ~~l~~~~i~il~~~~----~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil 238 (553)
+||.++++++|+++. .|+|.+ ..++|+|+++|||||| |+.++++|++||+|++++|+||+++||+||+||+|
T Consensus 84 ~El~~~~~~vl~~~~p~~~~pl~~~---~~~~e~r~~~R~Ldlr-~~~~~~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL 159 (435)
T 2xgt_A 84 HELIADFWKIIGNAPPGGIDNVLNE---EASVDKMLDNRHLVIR-GENAAALLRLRAAATRAMREHFYNAGYVEVAPPTL 159 (435)
T ss_dssp EEEEEEEEEEEECCCTTHHHHHCC-----CCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSE
T ss_pred EEEEEEEEEEeecCCCccccccccc---CCCHHHHhhCeeeeec-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeE
Confidence 999999999999853 234433 5789999999999995 99999999999999999999999999999999999
Q ss_pred ccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCCHHHH
Q psy11418 239 NMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYADYNDL 317 (553)
Q Consensus 239 ~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~~~~~ 317 (553)
+++..++++++|.+ +++|+++||++|||||||++++ |++||||||||||||++++ ||+|||||||||++|+|++|+
T Consensus 160 ~~s~~eG~~~~F~~--~~~g~~~~L~~SpqLylq~l~~-g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~d~ 236 (435)
T 2xgt_A 160 VQTQVEGGSTLFNL--DYFGEQSFLTQSSQLYLETCIP-TLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDL 236 (435)
T ss_dssp ESCCSSCTTSCCEE--EETTEEEEECSCSHHHHHHHHH-HHCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHHHH
T ss_pred eeccCCCchhceee--ccCCcccccCCChHHHHHHhhh-ccCceEEEecceecCCCCccccccceeEEEEEEecCCHHHH
Confidence 75432233578865 6899999999999999999874 7999999999999999997 899999999999999999999
Q ss_pred HHHHHHHHhcccccC
Q psy11418 318 MHLTEDLISGRKEDR 332 (553)
Q Consensus 318 m~~~e~li~~~~~~~ 332 (553)
|+++|+|++++++.+
T Consensus 237 m~~~E~li~~~~~~v 251 (435)
T 2xgt_A 237 MEKIEELVCDTVDRL 251 (435)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999997654
No 11
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=4.5e-55 Score=474.81 Aligned_cols=241 Identities=25% Similarity=0.345 Sum_probs=216.0
Q ss_pred cCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccC--CCHHHHHHHhccCCCCcEEEEEeeccccc------
Q psy11418 88 LENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMY--QSEEEFASDLVKIKRGDIIGVTGSPGKTK------ 159 (553)
Q Consensus 88 ~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~--~~~~~~~~~~~~l~~gd~V~v~G~~~~t~------ 159 (553)
..|++|+|+|||+++|.+|+.++|++|||+++.||||++++.. .+++ +.+..+.|+.||+|+|+|+|.+++
T Consensus 34 ~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~~-~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~ 112 (487)
T 1eov_A 34 DSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKN-MVKWAGSLNLESIVLVRGIVKKVDEPIKSA 112 (487)
T ss_dssp TTTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEEEEECCSSSSSCHH-HHHHHTTCCTTCEEEEEEEEEECSSCCTTS
T ss_pred cCCCEEEEEEEEEEeeccCCccEEEEEEECCccEEEEEeccccccccHH-HHHHHhcCCCCCEEEEEEEEEeCCCCCcCC
Confidence 3578999999999999999334999999999999999987521 1333 345678899999999999999886
Q ss_pred -CCceeEeeeeEEEeccCCCCCCCCC------------CCC--CCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHH
Q psy11418 160 -KGELSIIPKKLTLLSPCLHMLPHMH------------FGV--KDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRY 224 (553)
Q Consensus 160 -~ge~~l~~~~i~il~~~~~~lP~~~------------~~l--~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~f 224 (553)
+|++||.|++|+||++|+.++|... +++ .+.|+|+++|||||| ++.+++++++||.|++++|+|
T Consensus 113 ~~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr-~~~~~~~~~~rs~i~~~ir~~ 191 (487)
T 1eov_A 113 TVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLR-TVTNQAIFRIQAGVCELFREY 191 (487)
T ss_dssp SEEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEEEEEeecccccCCcchhhcccccccccccccccCChhhhhhcceeecC-CHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999998899632 333 688999999999998 899999999999999999999
Q ss_pred hhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcc
Q psy11418 225 LDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFT 303 (553)
Q Consensus 225 l~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt 303 (553)
|.++||+||+||+|+++++|++|++|.++ ++|.++|||||||||+|+|+++|++|||+||||||+|++++ ||+||||
T Consensus 192 ~~~~gF~EV~TPil~~~~~~~ga~~f~~~--~~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt 269 (487)
T 1eov_A 192 LATKKFTEVHTPKLLGAPSEGGSSVFEVT--YFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFT 269 (487)
T ss_dssp HHHTTCEECCCCSEESSCSSSSSCCCEEE--ETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEE
T ss_pred HHhCCcEEEeCCEEEEecCCCCcccceec--cCCccEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhh
Confidence 99999999999999987777788999986 58999999999999999999999999999999999999986 8999999
Q ss_pred eeeeEeccC-CHHHHHHHHHHHHhcccccC
Q psy11418 304 TCEFYMAYA-DYNDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 304 ~lE~e~a~~-~~~~~m~~~e~li~~~~~~~ 332 (553)
|||+|++|. +++|+|+++|+|++++++.+
T Consensus 270 ~le~e~af~~~~~dlm~l~E~ll~~l~~~v 299 (487)
T 1eov_A 270 GLDMEMAFEEHYHEVLDTLSELFVFIFSEL 299 (487)
T ss_dssp EEEEEEECSSCTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999997 69999999999999997654
No 12
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.8e-53 Score=455.59 Aligned_cols=234 Identities=27% Similarity=0.388 Sum_probs=214.0
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC--CceeEe
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK--GELSII 166 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~--ge~~l~ 166 (553)
.|++|+|+|||+++|.+| |++|++|||+++.||||++++. +.| +..+.|+.||+|+|+|++.++++ |++||.
T Consensus 15 ~~~~V~v~Gwv~~~R~~g-~~~F~~lrD~~g~iQ~v~~~~~----~~~-~~~~~l~~~~~v~v~G~v~~~~~~~~~~el~ 88 (429)
T 1wyd_A 15 DGKEVIWAGWVHLLRDLG-GKKFIILRDKTGLGQVVVDKNS----SAF-GISQELTQESVIQVRGIVKADKRAPRGIELH 88 (429)
T ss_dssp TTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEECTTS----TTH-HHHTTCCTTCEEEEEEEEEECSSSGGGEEEE
T ss_pred CCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCCh----HHH-HHHHhCCCCCEEEEEEEEEecCCCCccEEEE
Confidence 578899999999999999 8999999999999999998753 234 34578999999999999998875 599999
Q ss_pred eeeEEEeccCCCCCCCCC-CC-CCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCC
Q psy11418 167 PKKLTLLSPCLHMLPHMH-FG-VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGG 244 (553)
Q Consensus 167 ~~~i~il~~~~~~lP~~~-~~-l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gg 244 (553)
|++++||++|+.++|... ++ ..+.|+|+++|||||| |+.+++++++||.|++++|+||.++||+||+||+|+++.++
T Consensus 89 ~~~~~vl~~~~~~~P~~~~~~~~~~~e~r~~~R~Ldlr-~~~~~~~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~~~e 167 (429)
T 1wyd_A 89 AEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLR-RQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATE 167 (429)
T ss_dssp EEEEEEEECCCSSCSSCSSSCCCCCHHHHHHTHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSS
T ss_pred EeEEEEeccCCCCCCCCccccccCChhHhhhccceecc-CHHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCEEEeeCCC
Confidence 999999999988999543 33 3789999999999998 99999999999999999999999999999999999987777
Q ss_pred CCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCCHHHHHHHHHH
Q psy11418 245 ATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYADYNDLMHLTED 323 (553)
Q Consensus 245 a~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~~~~~m~~~e~ 323 (553)
+++++|.| +++|.++||++|||+|+|+ +++|++|||+||||||+|++++ ||+|||||||+|++|+|++|+|+++|+
T Consensus 168 ~~~~~f~~--~~~~~~~~L~~Spql~~~~-~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ 244 (429)
T 1wyd_A 168 GGAQLFPV--IYFGKEAFLAQSPQLYKEL-MAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEK 244 (429)
T ss_dssp TTCCCCEE--EETTEEEEECSCCHHHHHH-HHHHHSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETCCHHHHHHHHHH
T ss_pred CCceeEEE--ecCCceEEecCCcHHHHHH-HHhCcCceEEEcccccccCCccccccceeeEeeeeecCCCHHHHHHHHHH
Confidence 77899998 5889999999999999999 7789999999999999999998 899999999999999999999999999
Q ss_pred HHhcccccC
Q psy11418 324 LISGRKEDR 332 (553)
Q Consensus 324 li~~~~~~~ 332 (553)
+++++++.+
T Consensus 245 ll~~l~~~~ 253 (429)
T 1wyd_A 245 ILHNIVKTI 253 (429)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999997643
No 13
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-53 Score=468.24 Aligned_cols=248 Identities=26% Similarity=0.422 Sum_probs=218.9
Q ss_pred ccccCCHHHHHHHhCCCCcccccCCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCC
Q psy11418 66 FTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKR 145 (553)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~ 145 (553)
+.+|+++.++.+.+ .|++|+|+|||+++|.+ +|++|||++|.+|||++++.. +++ +.+..+.|+.
T Consensus 9 ~~rt~~~~~l~~~~---------~g~~V~l~GwV~~~R~~----~Fi~LrD~~g~iQvv~~~~~~-~~~-~~~~~~~l~~ 73 (617)
T 4ah6_A 9 VVRTNTCGELRSSH---------LGQEVTLCGWIQYRRQN----TFLVLRDFDGLVQVIIPQDES-AAS-VKKILCEAPV 73 (617)
T ss_dssp SSCSSCGGGCCGGG---------TTCEEEEEEEECCCCTT----TEEEEECSSCEEEEECCCSSS-SHH-HHHHHHHCCS
T ss_pred ccCceEHHHhHHHh---------CCCEEEEEEEeeeecCe----EEEEEEeCCcCEEEEEeCCcC-cHH-HHHHHhcCCC
Confidence 35678877765432 57789999999999964 399999999999999987653 333 3356788999
Q ss_pred CcEEEEEeeccc---------ccCCceeEeeeeEEEeccCCCCCCCC--CCCCCCcchhhcccchhhhccHHHHHHHHHH
Q psy11418 146 GDIIGVTGSPGK---------TKKGELSIIPKKLTLLSPCLHMLPHM--HFGVKDKETRFRQRYLDLMINERIRHKFIVR 214 (553)
Q Consensus 146 gd~V~v~G~~~~---------t~~ge~~l~~~~i~il~~~~~~lP~~--~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~r 214 (553)
||+|.|+|+|.+ +++|++||.+++|+||++|. ++|.+ .++..+.++|+++|||||| ++.++++|++|
T Consensus 74 e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~-~lP~~~~~~~~~~ee~Rl~~R~LdLR-~~~~~~~lr~R 151 (617)
T 4ah6_A 74 ESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACK-KLPFEIKNFVKKTEALRLQYRYLDLR-SFQMQYNLRLR 151 (617)
T ss_dssp SCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBC-CCSSCTTTTCCSCHHHHHHTHHHHTT-SHHHHHHHHHH
T ss_pred CCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCcccccccccChhhhccceeeeec-chHHHHHHHHH
Confidence 999999999875 45799999999999999998 88874 3456678999999999998 57899999999
Q ss_pred HHHHHHHHHHhh-hCCeEEEecceec-cccCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccC
Q psy11418 215 AQIIAYVRRYLD-SLGFLEVETPMMN-MIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNE 292 (553)
Q Consensus 215 s~i~~~ir~fl~-~~gF~EV~TPil~-~~~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E 292 (553)
|+|++++|+||. ++||+||+||+|+ +++||| ++|.++++.++..+||++|||||+|+|+++|++||||||||||||
T Consensus 152 s~i~~~iR~f~~~~~gF~EVeTPiL~~st~~GA--~~F~v~~~~~g~~~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~E 229 (617)
T 4ah6_A 152 SQMVMKMREYLCNLHGFVDIETPTLFKRTPGGA--KEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDE 229 (617)
T ss_dssp HHHHHHHHHHHHTTSCCEECCCCSSBCCCCSSS--CCCEEECSSTTCEEECCSSTTHHHHHHHHTSCSEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHhcCCeEEEeCCeeccCCCCCC--cCceeccccCCcccccccCHHHHHHHHHhcccCcEEEEEhheecc
Confidence 999999999995 7999999999997 456665 689999888999999999999999999999999999999999999
Q ss_pred CCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcccccC
Q psy11418 293 GIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDR 332 (553)
Q Consensus 293 ~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~~ 332 (553)
+++++|+|||||||+|++|+|++|+|+++|+|++++++..
T Consensus 230 ~~~t~r~pEFt~lE~e~af~d~~d~m~~~E~l~~~~~~~~ 269 (617)
T 4ah6_A 230 GSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPND 269 (617)
T ss_dssp SSCSSSCSEEEEEEEEEESCCHHHHHHHHHHHHHHHSCSS
T ss_pred cCCCCcCcceecceeeecCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998754
No 14
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=9.4e-53 Score=450.99 Aligned_cols=235 Identities=23% Similarity=0.296 Sum_probs=214.3
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC--CceeEe
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK--GELSII 166 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~--ge~~l~ 166 (553)
.|++|+|+|||+++|.+| |++|++|||+++.||||++++.. +++.| +.++.|+.||+|+|+|++.++++ |++||.
T Consensus 15 ~~~~V~v~G~v~~~R~~g-~~~F~~lrD~~g~iQ~v~~~~~~-~~~~~-~~~~~l~~~~~v~v~G~v~~~~~~~~~~el~ 91 (434)
T 1x54_A 15 DGKKVRLAGWVYTNMRVG-KKIFLWIRDSTGIVQAVVAKNVV-GEETF-EKAKKLGRESSVIVEGIVKADERAPGGAEVH 91 (434)
T ss_dssp TTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEECHHHH-CHHHH-HHHHTCCTTCEEEEEEEEEECTTSGGGEEEE
T ss_pred CCCEEEEEEEEEEEecCC-CeEEEEEEECCEEEEEEEECCcC-CHHHH-HHHhcCCCCCEEEEEEEEEecCCCCccEEEE
Confidence 578899999999999999 89999999999999999986543 34455 45578999999999999998875 499999
Q ss_pred eeeEEEeccCCCCCCC--CCCCCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccccCC
Q psy11418 167 PKKLTLLSPCLHMLPH--MHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGG 244 (553)
Q Consensus 167 ~~~i~il~~~~~~lP~--~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~gg 244 (553)
|+++++|++| .++|. ... ..+.|+|+++|||||| |+.+++++++|+.|++++|+||.++||+||+||+|+++.++
T Consensus 92 ~~~~~vl~~~-~~~P~~~~~~-~~~~e~r~~~R~Ldlr-~~~~~~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~~~e 168 (434)
T 1x54_A 92 VEKLEVIQAV-SEFPIPENPE-QASPELLLDYRHLHIR-TPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVE 168 (434)
T ss_dssp EEEEEEEECC-SCCSSCSSGG-GSCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCSS
T ss_pred EeEEEEeecC-CCCCCccccc-CCCHHHhhhceeeeec-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEeecCC
Confidence 9999999999 88996 322 3688999999999998 99999999999999999999999999999999999988777
Q ss_pred CCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccCCHHHHHHHHHH
Q psy11418 245 ATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYADYNDLMHLTED 323 (553)
Q Consensus 245 a~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~~~~~~m~~~e~ 323 (553)
+++++|.| +++|.++|||+|||+|+|+ +++|++|||+||||||+|++++ ||+|||||||+|++|.|++|+|+++|+
T Consensus 169 ~~~~~f~~--~~~~~~~~Lr~Spel~~~~-~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ 245 (434)
T 1x54_A 169 GGATLFKL--KYFDKYAYLSQSAQLYLEA-AIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEE 245 (434)
T ss_dssp CGGGCCEE--EETTEEEEECSCSHHHHHH-HHHHHSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCCHHHHHHHHHH
T ss_pred CCceeEEE--eecCCcEEeccChHHHHHH-HhcCccceEEEecceecCCCCCcccccEEEEeeEEEcCCCHHHHHHHHHH
Confidence 77899998 5889999999999999999 6789999999999999999998 899999999999999999999999999
Q ss_pred HHhcccccC
Q psy11418 324 LISGRKEDR 332 (553)
Q Consensus 324 li~~~~~~~ 332 (553)
+++++++.+
T Consensus 246 ll~~l~~~v 254 (434)
T 1x54_A 246 LVSYMVQRT 254 (434)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999997653
No 15
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=9.2e-53 Score=449.29 Aligned_cols=226 Identities=28% Similarity=0.418 Sum_probs=162.8
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCC-CCcEEEEEeecccccC--CceeE
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIK-RGDIIGVTGSPGKTKK--GELSI 165 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~-~gd~V~v~G~~~~t~~--ge~~l 165 (553)
.|++|+|+|||+++|.+| |++|++|||+++.||||+++ +.|+ .||+|.|+|++.++++ |++||
T Consensus 12 ~~~~V~v~Gwv~~~R~~g-~~~F~~lrD~~g~iQ~v~~~-------------~~l~~~~~~v~v~G~v~~~~~~~~~~el 77 (422)
T 1n9w_A 12 VGQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQVVTGG-------------LKLPLPESALRVRGLVVENAKAPGGLEV 77 (422)
T ss_dssp TTSEEEEEEEEEEEEECS-SEEEEEEEETTEEEEEEEES-------------CCCCCTTCEEEEEEEEEECTTSTTSEEE
T ss_pred CCCEEEEEEEEEEEecCC-CeEEEEEEECCEEEEEEEEc-------------cccCCCCCEEEEEEEEEecCCCCccEEE
Confidence 578899999999999999 89999999999999999975 3589 9999999999998874 59999
Q ss_pred eeeeEEEeccCCCCCCCCC-C--CCCCcchhhcccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceecccc
Q psy11418 166 IPKKLTLLSPCLHMLPHMH-F--GVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 242 (553)
Q Consensus 166 ~~~~i~il~~~~~~lP~~~-~--~l~~~e~r~~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~ 242 (553)
.|+++++|++|+.++|... . +..+.|+|+++|||||| |+.+++++++|+.|++++|+||.++||+||+||+|+++.
T Consensus 78 ~~~~~~vl~~~~~~~P~~~~~~~~~~~~e~r~~~R~Ldlr-~~~~~~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~ 156 (422)
T 1n9w_A 78 QAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLR-GEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAG 156 (422)
T ss_dssp EEEEEEEEECCCSCCC-----------------CHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC------
T ss_pred EEeEEEEeccCCcCCCCCccccccCCCHHHHhhhhHHhhc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeC
Confidence 9999999999988999532 2 45788999999999998 999999999999999999999999999999999999777
Q ss_pred CCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccCCcEEEEccccccCCCCC-CccCCcceeeeEeccC-CHHHHHHH
Q psy11418 243 GGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNPEFTTCEFYMAYA-DYNDLMHL 320 (553)
Q Consensus 243 gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~~rVfei~~~FR~E~~~~-~H~~EFt~lE~e~a~~-~~~~~m~~ 320 (553)
+|+++++|.+ +++|.++||++|||+|+|+++ +|++|||+||||||+|++++ ||+|||||||+|++|+ |++|+|++
T Consensus 157 ~e~~~~~f~~--~~~g~~~~L~~Spel~~~~l~-~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d~~dlm~l 233 (422)
T 1n9w_A 157 AEGGSGLFGV--DYFEKRAYLAQSPQLYKQIMV-GVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRL 233 (422)
T ss_dssp ------------------------CHHHHHHHH-HHHSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHH
T ss_pred CCCCceeEEE--eeCCCcEEeeeCHHHHHHHHh-hCCCceeEEeCceECCCCCCCcccceeEEeeeeeeCCCCHHHHHHH
Confidence 7777899988 588999999999999999987 78999999999999999998 8999999999999999 99999999
Q ss_pred HHHHHhcccccC
Q psy11418 321 TEDLISGRKEDR 332 (553)
Q Consensus 321 ~e~li~~~~~~~ 332 (553)
+|+|++++++.+
T Consensus 234 ~e~ll~~l~~~~ 245 (422)
T 1n9w_A 234 EEALLAEMLEEA 245 (422)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999997644
No 16
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=100.00 E-value=3.8e-34 Score=298.01 Aligned_cols=124 Identities=35% Similarity=0.554 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCeEEEecceecccc-CCCCCcceeeccC----CCCcceeeeeCHHHHHHHHHHccCCc
Q psy11418 207 IRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHHN----DLNMDLYMRIAPELYLKMLVVGGLDR 281 (553)
Q Consensus 207 ~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~-gga~a~~F~t~~~----~~~~~~~L~~Spql~lk~l~~~g~~r 281 (553)
.+++|++||+|+++||+||.++||+||+||+|+++. +|+.++||.|+++ ..+.++||+||||||+|+|+++|++|
T Consensus 32 ~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~g~~r 111 (345)
T 3a5y_A 32 SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGP 111 (345)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEEecCcccccCCCEeecCCHHHHHHHHHHcCCCc
Confidence 789999999999999999999999999999999654 4577999998643 23378999999999999999999999
Q ss_pred EEEEccccccCCCCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcccc
Q psy11418 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKE 330 (553)
Q Consensus 282 Vfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~ 330 (553)
|||||||||||+++++|+|||||||+|++|+|++|+|+++|+||+++++
T Consensus 112 vyqIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~ 160 (345)
T 3a5y_A 112 VFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLD 160 (345)
T ss_dssp EEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHC
T ss_pred EEEEEcceeCCCCcccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHc
Confidence 9999999999999889999999999999999999999999999999986
No 17
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=3.9e-33 Score=298.66 Aligned_cols=217 Identities=23% Similarity=0.355 Sum_probs=181.3
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCC--CceeEEeeeEEEEeccCCCCCccccC--
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK--GELSIIPKKLTLLSPCLHMLPHMHFG-- 400 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~--g~~El~~~~i~vl~~~~~~~P~~~~~-- 400 (553)
|..+-++.+.+|++++.... .++.+..++.|+.||+|.|+|.+.++++ |++||.+++++||++|..++|+++++
T Consensus 36 Fi~LrD~~g~iQ~v~~~~~~--~~~~~~~~~~l~~~~~V~V~G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~ 113 (438)
T 3nem_A 36 FLWIRDRDGIVQITAPKKKV--DPELFKLIPKLRSEDVVAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKV 113 (438)
T ss_dssp EEEEEETTEEEEEEEETTTS--CHHHHHHGGGCCTTCEEEEEEEEEECTTSTTSEEEEEEEEEEEECBCSSCSSCTTSSS
T ss_pred EEEEEECCeeEEEEEeCCcC--CHHHHHHHhcCCCCCEEEEEEEEEeCCCCCCcEEEEEEEEEEEecCCCCCCCCccccc
Confidence 45667778889999876432 2456778899999999999999998875 89999999999999999889998876
Q ss_pred CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcceeeeeecCCCCCcceeEE
Q psy11418 401 VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPFVTHHNDLNMDLYMR 478 (553)
Q Consensus 401 ~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~~~~t~~~~~~~~~yL~ 478 (553)
..+.++|+++|||||| ++.++++|++||.++++||+||.++||+||+||+|++++ ||+.+||+. +||.++||+
T Consensus 114 ~~~~e~r~~~R~Ldlr-~~~~~~~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~eg~~~~f~~~----~~~~~~yL~ 188 (438)
T 3nem_A 114 KAELDTRLDNRFMDLR-RPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMK----YFEEDAFLA 188 (438)
T ss_dssp CCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSCSSSCCEEE----ETTEEEEEC
T ss_pred cCCHHHHhhchHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCCCCCccceeEe----eCCccEEEe
Confidence 3689999999999998 999999999999999999999999999999999999987 677799998 889999999
Q ss_pred eChhHHHHHhc-cCcceEe----------------cCCCCCCC-----CC------------------------------
Q psy11418 479 IAPELYLKSTH-GSYKVTY----------------HPDGPESG-----SP------------------------------ 506 (553)
Q Consensus 479 ~Spel~~k~l~-~~~~~~~----------------~~e~~~~~-----~~------------------------------ 506 (553)
+|||||+|++. ++++++| +|||+|+. ..
T Consensus 189 ~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~ 268 (438)
T 3nem_A 189 QSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDI 268 (438)
T ss_dssp SCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cChHHHHHHHHhcCCCceEEEcceEECCCCCCcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhh
Confidence 99999999884 7787765 47887640 00
Q ss_pred cccC---CCCCceeeeHHHHHHH--HhCCCCCCCCCCChHHHHHHHh
Q psy11418 507 VEID---FTPPFRRLHMFPALEA--ALGVKLPNPTEFDTPEANKFLS 548 (553)
Q Consensus 507 ~~~~---~~~~f~rit~~eA~~~--~~g~~~~~~~~~~~~~~~~~~~ 548 (553)
...+ +..||+||||.||++. ..|+++.+..+++++....+++
T Consensus 269 ~~~~l~~~~~pf~rity~eai~~l~~~g~~~~~~~dl~~~~e~~l~~ 315 (438)
T 3nem_A 269 LNFELEEPKLPFPRVSYDKALEILGDLGKEIPWGEDIDTEGERLLGK 315 (438)
T ss_dssp TTCCCCCCCSSCCEEEHHHHHHHHHHTTCCCCTTSCCCHHHHHHHHH
T ss_pred cccccccCCCCceEEEHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHH
Confidence 0112 3569999999999985 5688888777888776665543
No 18
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=99.98 E-value=2.6e-33 Score=304.76 Aligned_cols=170 Identities=39% Similarity=0.675 Sum_probs=149.9
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCCh
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK 404 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~ 404 (553)
|..+-++.+.+|++++.... .++.+..+++|+.||+|.|+|.|.++++|++||.+++|+||++|..++|.++++..++
T Consensus 106 Fi~LrD~sg~iQvv~~~~~~--~~~~~~~~~~l~~gd~V~V~G~v~~t~~gelel~~~~i~vLs~a~~plP~k~~~l~d~ 183 (529)
T 4ex5_A 106 FATVQDGSGQIQFFVTPADV--GAETYDAFKKWDLGDIVAARGVLFRTNKGELSVKCTQLRLLAKALRPLPDKFHGLADQ 183 (529)
T ss_dssp EEEEECSSCEEEEEECHHHH--CHHHHHHHHTCCTTCEEEEEEEEEECTTSCEEEEEEEEEEEECCSSCCCC------CT
T ss_pred EEEEEeCCeeEEEEEECCcC--CHHHHHHHhcCCCCCEEEEEEEEEEcCCCcEEEEEEEEEEEecCCCCCCccccCCcCh
Confidence 45677788899999876332 2345577788999999999999999999999999999999999998999999898899
Q ss_pred hhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhHH
Q psy11418 405 ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELY 484 (553)
Q Consensus 405 e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel~ 484 (553)
++|+++||||||+|+.++++|++||+++++||+||+++||+||+||+|++++|||++.||.|++++|+.++||+||||||
T Consensus 184 e~r~r~RyLdLr~~~~~~~~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~gGA~a~pF~t~~n~~~~~~yL~~SpqLy 263 (529)
T 4ex5_A 184 ETRYRQRYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVTHHNALDMEMFLRIAPELY 263 (529)
T ss_dssp THHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTTTEEEEECSCSHHH
T ss_pred hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccCCCCcccccccccccCCcceecccCHHHH
Confidence 99999999999889999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHh-ccCcceEe
Q psy11418 485 LKST-HGSYKVTY 496 (553)
Q Consensus 485 ~k~l-~~~~~~~~ 496 (553)
+|++ +++++++|
T Consensus 264 lk~L~v~G~~rVy 276 (529)
T 4ex5_A 264 LKRLIVGGFERVF 276 (529)
T ss_dssp HHHHHHTTCSEEE
T ss_pred HHHHHhcCCCcEE
Confidence 9986 68888876
No 19
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=99.98 E-value=5.9e-33 Score=303.19 Aligned_cols=172 Identities=64% Similarity=1.077 Sum_probs=151.2
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCCh
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK 404 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~ 404 (553)
|..+-++.+.+|++++.......+.+..+.+.|+.||+|.|+|.+.++++|++||.+++|+||++|..++|.+.++..++
T Consensus 76 F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~ge~ei~~~~i~~l~~~~~~lP~~~~~~~~~ 155 (521)
T 3bju_A 76 FYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 155 (521)
T ss_dssp EEEEEETTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCCSCCCCC----CCH
T ss_pred EEEEEECCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecCCCCEEEEEeEEEEeecCCCCCCCccccccCh
Confidence 45666777889999876443223445555678999999999999999999999999999999999998999998888899
Q ss_pred hhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhHH
Q psy11418 405 ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELY 484 (553)
Q Consensus 405 e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel~ 484 (553)
++|+++||||||+|+.++++|++||.++++||+||.++||+||+||+|++++|||++.||.|++++||.++||+||||||
T Consensus 156 e~r~r~RyLdLr~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t~~~~~~~~~yL~~SpqL~ 235 (521)
T 3bju_A 156 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELY 235 (521)
T ss_dssp HHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEEETTTTEEEEECSCSHHH
T ss_pred hhhhhhhhhhHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCceeeccCCCccccceeeecccCCcceEeeCCHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHh-ccCcceEe
Q psy11418 485 LKST-HGSYKVTY 496 (553)
Q Consensus 485 ~k~l-~~~~~~~~ 496 (553)
+|++ +++++++|
T Consensus 236 lk~liv~g~~rVy 248 (521)
T 3bju_A 236 HKMLVVGGIDRVY 248 (521)
T ss_dssp HHHHHHTTCCEEE
T ss_pred HHHHHhcCcCceE
Confidence 9986 67788876
No 20
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=99.97 E-value=4.3e-32 Score=299.54 Aligned_cols=197 Identities=19% Similarity=0.304 Sum_probs=162.0
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccC-------CCCceeEEeeeEEEEeccC-CCCCc
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT-------KKGELSIIPKKLTLLSPCL-HMLPH 396 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~-------~~g~~El~~~~i~vl~~~~-~~~P~ 396 (553)
|..+-++.+.+|++++... + .+..++.|+.||+|.|+|+|.++ ++|++||.+++++||++|. .|+|+
T Consensus 36 Fi~LrD~~g~iQvv~~~~~----~-~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i 110 (580)
T 1l0w_A 36 FLDLRDREGLVQLVAHPAS----P-AYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPV 110 (580)
T ss_dssp EEEEEETTEEEEEEECTTS----T-THHHHTTCCTTCEEEEEEEEEECSSCCTTSTTTTEEEEEEEEEEEECCCCCSSCC
T ss_pred EEEEEECCeeEEEEEeCCh----h-HHHHHhcCCCCcEEEEEEEEEcCCCcCccCCCccEEEEEeEEEEeccCcCCCCCc
Confidence 4567778888999987532 2 45567899999999999999876 5789999999999999996 23444
Q ss_pred cc------cCCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcceeeeeecCC
Q psy11418 397 MH------FGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHHN 469 (553)
Q Consensus 397 ~~------~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~~~~~~t~~~ 469 (553)
.. +...++++|+++|||||| +|.++++|++||+++++||+||+++||+|||||+|++++ |||. +|.++++
T Consensus 111 ~~~~~~~~~~~~~~e~Rl~~RyLdLR-~~~~~~~l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~eGAr--~F~v~~~ 187 (580)
T 1l0w_A 111 DAGWRGEEEKEASEELRLKYRYLDLR-RRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGAR--DFLVPYR 187 (580)
T ss_dssp SSGGGTCCCCCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSC--CCEEECT
T ss_pred chhccccccccCCHHHhhhhhHHHhc-CHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCCCCCC--Ccccccc
Confidence 33 446789999999999999 999999999999999999999999999999999999887 8875 5666666
Q ss_pred CCCccee-EEeChhHHHHHh-ccCcceEe---------------cCCCCCCC------------------------CCcc
Q psy11418 470 DLNMDLY-MRIAPELYLKST-HGSYKVTY---------------HPDGPESG------------------------SPVE 508 (553)
Q Consensus 470 ~~~~~~y-L~~Spel~~k~l-~~~~~~~~---------------~~e~~~~~------------------------~~~~ 508 (553)
.++.+.| |+||||||+|+| +++++++| +|||+|+. ....
T Consensus 188 ~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~~~r~pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~ 267 (580)
T 1l0w_A 188 HEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVEVEDVLELNERLMAHVFREALG 267 (580)
T ss_dssp TSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCCceeECccCHHHHHHHHHHhccCCeEEEeceeeCCCCCCCcCCCccceeeeecCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 6665555 999999999985 77888766 88888641 0112
Q ss_pred cCCCCCceeeeHHHHHHHHhC
Q psy11418 509 IDFTPPFRRLHMFPALEAALG 529 (553)
Q Consensus 509 ~~~~~~f~rit~~eA~~~~~g 529 (553)
+++..||+||||.|||++|++
T Consensus 268 ~~~~~pf~rity~eA~~~~g~ 288 (580)
T 1l0w_A 268 VELPLPFPRLSYEEAMERYGS 288 (580)
T ss_dssp CCCCSSCCEEEHHHHHHHHSS
T ss_pred CccCCCccEEEHHHHHHHhcC
Confidence 456779999999999999954
No 21
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=99.97 E-value=1.9e-31 Score=290.57 Aligned_cols=216 Identities=20% Similarity=0.254 Sum_probs=162.7
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCC-------CCceeEEeeeEEEEeccCCCCCcc
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-------KGELSIIPKKLTLLSPCLHMLPHM 397 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~-------~g~~El~~~~i~vl~~~~~~~P~~ 397 (553)
|..+-++.+.+|++++.... ..+++..+++.|+.||+|.|+|+|.+++ +|++||++++|+||++|..++|++
T Consensus 82 Fi~LrD~~g~iQ~v~~~~~~-~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~ 160 (548)
T 3i7f_A 82 FLFLRKGIYTCQALVMKSET-ISKEFVQFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQ 160 (548)
T ss_dssp EEEEEETTEEEEEEEECSSS-SCHHHHHHHHTCCTTEEEEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSC
T ss_pred EEEEEECCeeEEEEEECCCc-cCHHHHHHHhCCCCCCEEEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCCCCCCCC
Confidence 45666778889988875222 2357888899999999999999998765 589999999999999998889987
Q ss_pred ccC---------------------------------------------------------CCChhhhccccceeeecChH
Q psy11418 398 HFG---------------------------------------------------------VKDKETRFRQRYLDLMINER 420 (553)
Q Consensus 398 ~~~---------------------------------------------------------~~~~e~~~~~R~L~lR~~~~ 420 (553)
+.+ ..+.++|+++|||||| ++.
T Consensus 161 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR-~~~ 239 (548)
T 3i7f_A 161 IEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLR-TVT 239 (548)
T ss_dssp SGGGSCCHHHHHHHHHHTTCC-------------------------------CCCCCCCCCCCHHHHHTTHHHHTT-SHH
T ss_pred chhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCHHHhhhchhhccC-CHH
Confidence 421 3478999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcceeeeeecCCCCCcceeEEeChhHHHHHh-ccCcceEe-
Q psy11418 421 IRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPFVTHHNDLNMDLYMRIAPELYLKST-HGSYKVTY- 496 (553)
Q Consensus 421 ~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~~~~t~~~~~~~~~yL~~Spel~~k~l-~~~~~~~~- 496 (553)
++++|++||.++++||+||.++||+||+||+|++++ |||..|.+. ||+.++||++|||||||++ +++++++|
T Consensus 240 ~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~egga~~F~v~----~~~~~~yL~~Spql~~k~ll~~g~~rVfe 315 (548)
T 3i7f_A 240 NIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVK----YFDRKAYLAQSPQLYKQMAIMGDFRKVFE 315 (548)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC-----------------------CCBCSCTHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCCCCcceeEEe----cCCCceEeccCHHHHHHHHHhcCcCcEEE
Confidence 999999999999999999999999999999999998 355555443 8999999999999999976 66777655
Q ss_pred ---------------cCCCCCCC-----C-------------------------------------CcccCCCCCceeee
Q psy11418 497 ---------------HPDGPESG-----S-------------------------------------PVEIDFTPPFRRLH 519 (553)
Q Consensus 497 ---------------~~e~~~~~-----~-------------------------------------~~~~~~~~~f~rit 519 (553)
+|||+|+. . ...+++ .||+|||
T Consensus 316 I~~~FR~E~~~t~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~el~~~~~~~~~~~~~~-~pf~rit 394 (548)
T 3i7f_A 316 VGPVFRAENSNTRRHLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIY-RPFLRLT 394 (548)
T ss_dssp EEEECCCSCCCSSSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCC-CSCEEEE
T ss_pred EeeeEecCCCCCCCcchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCcccccc-CCcceeE
Confidence 57887640 0 001122 6899999
Q ss_pred HHHHHHHH--hCCCCCCCCCCChHHHHHHH
Q psy11418 520 MFPALEAA--LGVKLPNPTEFDTPEANKFL 547 (553)
Q Consensus 520 ~~eA~~~~--~g~~~~~~~~~~~~~~~~~~ 547 (553)
|.||++.+ .|+++.+..+++++....+.
T Consensus 395 ~~eai~~l~~~g~~~~~~~dl~~~~e~~l~ 424 (548)
T 3i7f_A 395 YKEAIEMLRASGETIGDYDDFTTPQEVKLG 424 (548)
T ss_dssp HHHHHHHHHHTTCCCCTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCccccchHHHHHHH
Confidence 99999865 78888877778777655444
No 22
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=99.97 E-value=1.2e-31 Score=296.71 Aligned_cols=196 Identities=21% Similarity=0.348 Sum_probs=162.3
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccC---------CCCceeEEeeeEEEEeccCCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---------KKGELSIIPKKLTLLSPCLHMLP 395 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~---------~~g~~El~~~~i~vl~~~~~~~P 395 (553)
|..+-++.+.+|++++... ++.+..++.|+.||+|.|+|+|.++ ++|++||.+++++||++|. ++|
T Consensus 35 Fi~LrD~~g~iQvv~~~~~----~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~~geiEl~~~~i~vl~~a~-~lP 109 (585)
T 1c0a_A 35 FIDMRDREGIVQVFFDPDR----ADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD-VLP 109 (585)
T ss_dssp EEEEEETTEEEEEEECGGG----HHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCC-SCS
T ss_pred EEEEEECCeeEEEEEeCCc----hHHHHHHhcCCCCCEEEEEeEEEccCcccccccCCCccEEEEEeEEEEEeccC-CCC
Confidence 5567778888999987532 4556677899999999999999876 4789999999999999997 577
Q ss_pred ccccCCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcceeeeeecCCCCCcc
Q psy11418 396 HMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHHNDLNMD 474 (553)
Q Consensus 396 ~~~~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~~~~~~t~~~~~~~~ 474 (553)
+.+.+..++++|+++|||||| +|.++++|++||+++++||+||+++||+|||||+|++++ |||+ +|.++++.++.+
T Consensus 110 ~~~~~~~~~e~Rl~~R~LdLR-~~~~~~~l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~eGAr--~F~v~~~~~~~~ 186 (585)
T 1c0a_A 110 LDSNHVNTEEARLKYRYLDLR-RPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGAR--DYLVPSRVHKGK 186 (585)
T ss_dssp SCTTSCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSC--CCEEECSSSTTC
T ss_pred CCccccCCHhHhhhchHhhhc-CHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCCCCCc--cceecccccCCc
Confidence 777677889999999999999 999999999999999999999999999999999999877 8875 566666566555
Q ss_pred e-eEEeChhHHHHHh-ccCcceEe---------------cCCCCCCCC------------------------CcccCCCC
Q psy11418 475 L-YMRIAPELYLKST-HGSYKVTY---------------HPDGPESGS------------------------PVEIDFTP 513 (553)
Q Consensus 475 ~-yL~~Spel~~k~l-~~~~~~~~---------------~~e~~~~~~------------------------~~~~~~~~ 513 (553)
. ||+||||||+|+| +++++++| +|||+|+.. ....++..
T Consensus 187 ~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~t~r~pEFT~lE~e~af~d~~dvm~~~E~li~~i~~~v~~~~~~~ 266 (585)
T 1c0a_A 187 FYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGD 266 (585)
T ss_dssp EEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSCCCCS
T ss_pred eEeCccCHHHHHHHHHhcCCCceEEEeceeecCCCCCCcCcccceeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 5 5999999999985 77788766 788887410 01123444
Q ss_pred CceeeeHHHHHHHHhC
Q psy11418 514 PFRRLHMFPALEAALG 529 (553)
Q Consensus 514 ~f~rit~~eA~~~~~g 529 (553)
|+||||.|||++|+.
T Consensus 267 -f~r~ty~ea~~~~g~ 281 (585)
T 1c0a_A 267 -FPVMTFAEAERRYGS 281 (585)
T ss_dssp -CCEEEHHHHHHHHSC
T ss_pred -cceeeHHHHHHHhcC
Confidence 999999999999954
No 23
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=99.97 E-value=1.5e-31 Score=287.71 Aligned_cols=216 Identities=15% Similarity=0.206 Sum_probs=166.5
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCC----------CceeEEeeeEEEEeccCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK----------GELSIIPKKLTLLSPCLHML 394 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~----------g~~El~~~~i~vl~~~~~~~ 394 (553)
|..+-++.+.+|++++..... +.. .+..|+.||+|.|+|.|++++. |++||.+++++||++|..++
T Consensus 51 Fi~LrD~sg~iQvv~~~~~~~---~~~-~~~~l~~g~~V~V~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~~~~ 126 (456)
T 3m4p_A 51 FVELRDGSGYCQCVIFGKELC---EPE-KVKLLTRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDL 126 (456)
T ss_dssp EEEEECSSCEEEEEEESTTTT---CHH-HHTTCCTTCEEEEEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCCGGG
T ss_pred EEEEEeCCccEEEEEecccch---hhH-HhhcCCCccEEEEEeEEEecCCcccCcccCCCCcEEEEEeEEEEEecCCCCC
Confidence 456667788899988763322 122 2458999999999999987653 89999999999999998666
Q ss_pred CccccCCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcceeeeeecCCCCC
Q psy11418 395 PHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPFVTHHNDLN 472 (553)
Q Consensus 395 P~~~~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~~~~t~~~~~~ 472 (553)
|....+..++|+|+++|||||| ++.++++|++||.++++||+||+++||+||+||+|++++ ||+.+|++. |||
T Consensus 127 ~~~~~~~~~~e~r~~~R~LdlR-~~~~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~~----~~~ 201 (456)
T 3m4p_A 127 ENIINKDSSIPQKMQNRHIVIR-SEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKLQ----YFN 201 (456)
T ss_dssp TTTSCTTCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEC------CCCCEEE----ETT
T ss_pred cccccccCCHHHHhhchHHhhh-cHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCCCCcccccccc----ccC
Confidence 6555667889999999999998 999999999999999999999999999999999998886 666677665 999
Q ss_pred cceeEEeChhHHHHHhccCcceEe----------------cCCCCCCCC-------------------------------
Q psy11418 473 MDLYMRIAPELYLKSTHGSYKVTY----------------HPDGPESGS------------------------------- 505 (553)
Q Consensus 473 ~~~yL~~Spel~~k~l~~~~~~~~----------------~~e~~~~~~------------------------------- 505 (553)
.++||++|||||+|++.++++++| +|||+|+..
T Consensus 202 ~~~~L~~SpqL~lq~l~~g~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~ 281 (456)
T 3m4p_A 202 EPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGD 281 (456)
T ss_dssp EEEEECSCCHHHHHTTHHHHSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHHhccCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999876666654 578876410
Q ss_pred ---CcccCC---CCCceeeeHHHHHHHH--hCCCC-----CCCCCCChHHHHHHHhC
Q psy11418 506 ---PVEIDF---TPPFRRLHMFPALEAA--LGVKL-----PNPTEFDTPEANKFLSD 549 (553)
Q Consensus 506 ---~~~~~~---~~~f~rit~~eA~~~~--~g~~~-----~~~~~~~~~~~~~~~~~ 549 (553)
...++| ..||+||||.||++.+ .|++. .++.+++......+.+.
T Consensus 282 ~~~~~~~~~~~~~~pf~rity~eAi~~l~~~g~~~~~~~~~~g~~l~~~~e~~l~~~ 338 (456)
T 3m4p_A 282 KIRKMNPHLKLPTRPFKRMTYADAIKYCNDHGILNKDKPFEYGEDISEKPERQMTDE 338 (456)
T ss_dssp HHHHHCTTCCCCCSSCEEEEHHHHHHHHHHHTCCSSSSCCCTTCCCCHHHHHHHHHH
T ss_pred hHhhcCcccccCCCCCeEeeHHHHHHHHHHcCCCccccCcchHHHHHHHHHHHHHHH
Confidence 011223 4689999999999844 47643 24556666655554443
No 24
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=99.97 E-value=2.7e-31 Score=292.87 Aligned_cols=198 Identities=21% Similarity=0.279 Sum_probs=166.2
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEccccc---------CCCCceeEEeeeEEEEeccCCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK---------TKKGELSIIPKKLTLLSPCLHMLP 395 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~---------~~~g~~El~~~~i~vl~~~~~~~P 395 (553)
|..+-++.+.+|++++... ..++++..++.|+.||+|.|+|+|.+ +++|++||.+++|+||++|. ++|
T Consensus 41 Fi~LrD~~g~iQvv~~~~~--~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~-~lP 117 (617)
T 4ah6_A 41 FLVLRDFDGLVQVIIPQDE--SAASVKKILCEAPVESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACK-KLP 117 (617)
T ss_dssp EEEEECSSCEEEEECCCSS--SSHHHHHHHHHCCSSCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBC-CCS
T ss_pred EEEEEeCCcCEEEEEeCCc--CcHHHHHHHhcCCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCC
Confidence 6678888899999987632 22467788899999999999999975 34689999999999999998 888
Q ss_pred ccccC--CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHH-hCCcEEeeCceeeccC-CCcceeeeeecCCCC
Q psy11418 396 HMHFG--VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLD-SLGFLEVETPMMNMIA-GGATAKPFVTHHNDL 471 (553)
Q Consensus 396 ~~~~~--~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~-~~~F~EV~TPiL~~~~-~ga~~~~~~t~~~~~ 471 (553)
++..+ ..++++|+++|||||| ++.++++|++||+++++||+||. ++||+||+||+|++++ |||+. |.++++++
T Consensus 118 ~~~~~~~~~~ee~Rl~~R~LdLR-~~~~~~~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st~~GA~~--F~v~~~~~ 194 (617)
T 4ah6_A 118 FEIKNFVKKTEALRLQYRYLDLR-SFQMQYNLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGAKE--FLVPSREP 194 (617)
T ss_dssp SCTTTTCCSCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCCCSSSCC--CEEECSST
T ss_pred cccccccccChhhhccceeeeec-chHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCCCCCCcC--ceeccccC
Confidence 87654 4578999999999999 89999999999999999999996 7999999999999877 88874 45555578
Q ss_pred CcceeEEeChhHHHHHh-ccCcceEe---------------cCCCCCC-----------------------CCCcccCCC
Q psy11418 472 NMDLYMRIAPELYLKST-HGSYKVTY---------------HPDGPES-----------------------GSPVEIDFT 512 (553)
Q Consensus 472 ~~~~yL~~Spel~~k~l-~~~~~~~~---------------~~e~~~~-----------------------~~~~~~~~~ 512 (553)
|..+||++|||||+|++ +++++++| +|||+|+ ......++.
T Consensus 195 g~~~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~E~~~t~r~pEFt~lE~e~af~d~~d~m~~~E~l~~~~~~~~~~~~~ 274 (617)
T 4ah6_A 195 GKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQYSWPNDKDPVV 274 (617)
T ss_dssp TCEEECCSSTTHHHHHHHHTSCSEEEEEEEEECCCSSCSSSCSEEEEEEEEEESCCHHHHHHHHHHHHHHHSCSSSCCCC
T ss_pred CcccccccCHHHHHHHHHhcccCcEEEEEhheecccCCCCcCcceecceeeecCCCHHHHHHHHHHHHHHHHHHhcCccC
Confidence 89999999999999985 68887766 7778764 112234667
Q ss_pred CCceeeeHHHHHHHHh
Q psy11418 513 PPFRRLHMFPALEAAL 528 (553)
Q Consensus 513 ~~f~rit~~eA~~~~~ 528 (553)
.||+||||.|||.+|+
T Consensus 275 ~pf~r~ty~eA~~~yg 290 (617)
T 4ah6_A 275 VPFPTMTFAEVLATYG 290 (617)
T ss_dssp SSCCEEEHHHHHHHTS
T ss_pred CCceEeEHHHHHHHHc
Confidence 8999999999999996
No 25
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=99.97 E-value=1.2e-31 Score=291.53 Aligned_cols=223 Identities=37% Similarity=0.623 Sum_probs=181.8
Q ss_pred HhcccccCCCcccccccccccChHHHHH-hhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFAS-DLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKD 403 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~-~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~ 403 (553)
|..+-++.+.+|++++.... . ++.+. .++.|+.||+|.|+|.|.++++|++||.+++|+||++|..++|.+.++..+
T Consensus 84 F~~LrD~sg~iQvv~~~~~~-~-~~~~~~~~~~l~~g~~V~V~G~v~~~~~ge~ei~~~~i~vl~~a~~plP~k~~~~~~ 161 (504)
T 1e1o_A 84 FVTLQDVGGRIQLYVARDSL-P-EGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQD 161 (504)
T ss_dssp EEEEEETTEEEEEEEETTTS-S-TTHHHHTGGGCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCSSCCCC-------
T ss_pred EEEEEECCeeEEEEEECCcC-C-HHHHHHHHhcCCCCCEEEEEEEEEecCCceEEEEEEEEEEecccCCCCCccccCCcC
Confidence 45667778889999876432 1 23344 678999999999999999999999999999999999998889988777788
Q ss_pred hhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhH
Q psy11418 404 KETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPEL 483 (553)
Q Consensus 404 ~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel 483 (553)
+++|+++||||||++|.++++|++||.++++||+||+++||+||+||+|++++|||++.+|.|++++||.++||+|||||
T Consensus 162 ~e~r~r~RyLdL~~~~~~~~~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~~~~~~~~~yL~~SpqL 241 (504)
T 1e1o_A 162 QEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPEL 241 (504)
T ss_dssp TTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTEEEEECSCSHH
T ss_pred hhhhhhccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEeccCCCCceEEeccCHHH
Confidence 99999999999988999999999999999999999999999999999999888999999999998999999999999999
Q ss_pred HHHHh-ccCcceEe---------------cCCCCCCC----------------------------------CCcccCCCC
Q psy11418 484 YLKST-HGSYKVTY---------------HPDGPESG----------------------------------SPVEIDFTP 513 (553)
Q Consensus 484 ~~k~l-~~~~~~~~---------------~~e~~~~~----------------------------------~~~~~~~~~ 513 (553)
|+|+| +++++++| +|||+|+. ....++|..
T Consensus 242 ylk~L~v~G~~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~dlm~l~E~li~~~~~~v~~~~~i~~~~~~i~~~~ 321 (504)
T 1e1o_A 242 YLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGK 321 (504)
T ss_dssp HHHHHHHHTCCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSSSEEEETTEEEETTS
T ss_pred HHHHHhhcCCCcEEEEcccccCCCCCccccCceeeeeeeecCCCHHHHHHHHHHHHHHHHHHHhCCceeeeCCEeeccCC
Confidence 99996 56776655 78888640 112357888
Q ss_pred CceeeeHHHHHHHHhC-CCCCCCCCCChHHHHHHHhCCC
Q psy11418 514 PFRRLHMFPALEAALG-VKLPNPTEFDTPEANKFLSDPN 551 (553)
Q Consensus 514 ~f~rit~~eA~~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 551 (553)
||+||||.||+++++| +++... .+.+++.+++++.|
T Consensus 322 pf~rity~eAi~~~~~d~d~~~~--~~~~~~~~~~~~~g 358 (504)
T 1e1o_A 322 PFEKLTMREAIKKYRPETDMADL--DNFDAAKALAESIG 358 (504)
T ss_dssp CCEEEEHHHHHHHHSTTCCGGGG--GSHHHHHHHHHHTT
T ss_pred CceEEeHHHHHHHHcCCCCcccc--CCHHHHHHHHHHcC
Confidence 9999999999999999 876432 12355555655544
No 26
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.97 E-value=4.3e-31 Score=270.05 Aligned_cols=132 Identities=21% Similarity=0.311 Sum_probs=123.1
Q ss_pred cccchhhhccHHHHHHHHHHHHHHHHHHHHhhhCCeEEEecceeccc--------cCCCCCcceeeccCCCCcceeeeeC
Q psy11418 195 RQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI--------AGGATAKPFVTHHNDLNMDLYMRIA 266 (553)
Q Consensus 195 ~~R~ldl~~~~~~~~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~--------~gga~a~~F~t~~~~~~~~~~L~~S 266 (553)
++||+||| |+ +++++++|+.|++.+|+||.++||+||+||+|.++ .|++ +++|.+. ++|.++||++|
T Consensus 1 ~~r~l~lr-~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~~--~~~~~~~L~~S 75 (294)
T 1nnh_A 1 MNAVEIIS-RE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEVE--IYGVKMRLTHS 75 (294)
T ss_dssp -CHHHHHT-SC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEEE--ETTEEEEECSC
T ss_pred CchHHhhh-cc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEEE--cCCCCEEeccC
Confidence 47999997 78 99999999999999999999999999999999887 6666 8999874 78999999999
Q ss_pred HHHHHHHHHHccCCcEEEEccccccCC--CCC-CccCCcceeeeEeccCCHHHHHHHHHHHHhccccc
Q psy11418 267 PELYLKMLVVGGLDRVYEVGRQFRNEG--IDL-THNPEFTTCEFYMAYADYNDLMHLTEDLISGRKED 331 (553)
Q Consensus 267 pql~lk~l~~~g~~rVfei~~~FR~E~--~~~-~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~~~~ 331 (553)
||+|+|+++++|++|||+||||||+|+ +++ ||+|||||||+|++|.|++|+|+++|++++++++.
T Consensus 76 pe~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~l~~~~e~l~~~l~~~ 143 (294)
T 1nnh_A 76 MILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRK 143 (294)
T ss_dssp SHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 885 99999999999999999999999999999999643
No 27
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=99.97 E-value=1.7e-30 Score=278.01 Aligned_cols=216 Identities=20% Similarity=0.248 Sum_probs=172.8
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCC--CceeEEeeeEEEEeccCCCCCccccC--
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK--GELSIIPKKLTLLSPCLHMLPHMHFG-- 400 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~--g~~El~~~~i~vl~~~~~~~P~~~~~-- 400 (553)
|..+-++.+.+|++++... +.+..++.|+.||+|.|+|.+.++++ |++||.+++++||++|..++|++...
T Consensus 36 F~~lrD~~g~iQ~v~~~~~-----~~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~ 110 (429)
T 1wyd_A 36 FIILRDKTGLGQVVVDKNS-----SAFGISQELTQESVIQVRGIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKV 110 (429)
T ss_dssp EEEEEETTEEEEEEECTTS-----TTHHHHTTCCTTCEEEEEEEEEECSSSGGGEEEEEEEEEEEECCCSSCSSCSSSCC
T ss_pred EEEEEECCeeEEEEEeCCh-----HHHHHHHhCCCCCEEEEEEEEEecCCCCccEEEEEeEEEEeccCCCCCCCCccccc
Confidence 4567778888999987532 33556689999999999999998874 59999999999999998789987664
Q ss_pred CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeC
Q psy11418 401 VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIA 480 (553)
Q Consensus 401 ~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~S 480 (553)
..+.++|+++|||||| +|.+++++++||.++++||+||.++||+||+||+|+.+++++...+|.|. ++|.++||++|
T Consensus 111 ~~~~e~r~~~R~Ldlr-~~~~~~~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~~~e~~~~~f~~~--~~~~~~~L~~S 187 (429)
T 1wyd_A 111 KADIDTRLRERVLDLR-RQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVI--YFGKEAFLAQS 187 (429)
T ss_dssp CCCHHHHHHTHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEEE--ETTEEEEECSC
T ss_pred cCChhHhhhccceecc-CHHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCEEEeeCCCCCceeEEEe--cCCceEEecCC
Confidence 3789999999999999 99999999999999999999999999999999999988833333334432 88999999999
Q ss_pred hhHHHHHhccCcceEe----------------cCCCCCCC-----C-------------------------------Ccc
Q psy11418 481 PELYLKSTHGSYKVTY----------------HPDGPESG-----S-------------------------------PVE 508 (553)
Q Consensus 481 pel~~k~l~~~~~~~~----------------~~e~~~~~-----~-------------------------------~~~ 508 (553)
||+|+|++++++.++| +|||+|+. . ...
T Consensus 188 pql~~~~~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~ 267 (429)
T 1wyd_A 188 PQLYKELMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYE 267 (429)
T ss_dssp CHHHHHHHHHHHSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCC
T ss_pred cHHHHHHHHhCcCceEEEcccccccCCccccccceeeEeeeeecCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcccc
Confidence 9999999877776654 56777530 0 011
Q ss_pred cCC-CCCceeeeHHHHHHHHh--CCCCCCCCCCChHHHHHHHh
Q psy11418 509 IDF-TPPFRRLHMFPALEAAL--GVKLPNPTEFDTPEANKFLS 548 (553)
Q Consensus 509 ~~~-~~~f~rit~~eA~~~~~--g~~~~~~~~~~~~~~~~~~~ 548 (553)
+++ ..||+||||.||++.+. |+++.+..+++.+....+.+
T Consensus 268 ~~~l~~pf~rity~eA~~~~~~~g~~~~~~~~l~~~~e~~l~~ 310 (429)
T 1wyd_A 268 PPEVKIPIKRLKYTEAIEILRSKGYNIKFGDDIGTPELRILNE 310 (429)
T ss_dssp CCCCCSSCEEEEHHHHHHHHHHSSCCCCTTSCCCHHHHHHHHH
T ss_pred cccCCCCccEEEHHHHHHHHHhcCCCcccCcccCcHHHHHHHH
Confidence 222 47999999999999884 77666666677766555544
No 28
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=99.96 E-value=8.1e-31 Score=284.57 Aligned_cols=223 Identities=41% Similarity=0.616 Sum_probs=186.5
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCCCCCccccCCCCh
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK 404 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~ 404 (553)
|..+-++.+.+|++++.... .++.+..++.|+.||+|.|+|.|.++++|++||.+++|+||++|..++|.+.++..++
T Consensus 76 F~~LrD~sg~iQvv~~~~~~--~~~~~~~~~~l~~g~~v~V~G~v~~~~~ge~ei~~~~i~vl~~~~~plP~k~~~~~~~ 153 (493)
T 3a74_A 76 FAHIQDVTGQIQIYVRQDDV--GEQQYELFKISDLGDIVGVRGTMFKTKVGELSIKVSSYEFLTKALRPLPEKYHGLKDI 153 (493)
T ss_dssp EEEEEETTEEEEEEEEHHHH--HHHHHHHHHHCCTTCEEEEEEEEEECTTCCEEEEEEEEEEEECCSSCCCCC-----CH
T ss_pred EEEEEECCEeEEEEEECCcC--CHHHHHHHhcCCCCCEEEEEEEEEeCCCCcEEEEEEEEEEcccccCCCCccccCCCCH
Confidence 45677778889999875322 2345566688999999999999999999999999999999999988999887778889
Q ss_pred hhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeChhHH
Q psy11418 405 ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELY 484 (553)
Q Consensus 405 e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~Spel~ 484 (553)
++|+++||||||++|.++++|++||.++++||+||.++||+||+||+|+++++|+++.+|.|++++||.++||+||||||
T Consensus 154 e~r~r~RyldL~~~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~~~~~~~~~yLr~SpqLy 233 (493)
T 3a74_A 154 EQRYRQRYLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELH 233 (493)
T ss_dssp HHHHHTHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTTTEEEEECSCSHHH
T ss_pred hhhhhcchhhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEecccCCCceeEEecCHHHH
Confidence 99999999999889999999999999999999999999999999999998888888889999888999999999999999
Q ss_pred HHHh-ccCcceEe---------------cCCCCCCC----------------------------------CCcccCCCCC
Q psy11418 485 LKST-HGSYKVTY---------------HPDGPESG----------------------------------SPVEIDFTPP 514 (553)
Q Consensus 485 ~k~l-~~~~~~~~---------------~~e~~~~~----------------------------------~~~~~~~~~~ 514 (553)
+|++ +++++++| +|||+|+. ....++|..|
T Consensus 234 lk~l~v~G~~rVyeig~~FR~E~~~~rH~pEFT~lE~e~af~d~~dlm~l~E~ll~~l~~~v~~~~~i~~~~~~i~~~~p 313 (493)
T 3a74_A 234 LKRLIVGGLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQYGEHLVDLTPE 313 (493)
T ss_dssp HHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHSCSEEEETTEEEECCSS
T ss_pred HHHHhhcccCceEEECccccCCCCCcccCCceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHhCCceEeeCCEeeccCCC
Confidence 9996 67777765 78887640 1123578889
Q ss_pred ceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHhCCC
Q psy11418 515 FRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDPN 551 (553)
Q Consensus 515 f~rit~~eA~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 551 (553)
|+||||.||+++++|++++ .+++.+++.+++++.|
T Consensus 314 f~rity~eai~~~~~~d~~--~~~~~~~~~~~~~~~g 348 (493)
T 3a74_A 314 WRRLHMVDAIKEYVGVDFW--RQMSDEEARELAKEHG 348 (493)
T ss_dssp CEEEEHHHHHHHHTCCCTT--SCCCHHHHHHHHHHTT
T ss_pred cceeeHHHHHHHHhCCCCc--cccCHHHHHHHHHHcC
Confidence 9999999999999999873 2245677777776665
No 29
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=99.96 E-value=1.1e-29 Score=275.82 Aligned_cols=217 Identities=18% Similarity=0.204 Sum_probs=171.8
Q ss_pred HhcccccCCCccccccccccc-ChHHHHHhhcccCCccEEEEEcccccCC-------CCceeEEeeeEEEEeccCCCCCc
Q psy11418 325 ISGRKEDRNRPCVMANARMYQ-SEEEFASDLVKIKRGDIIGVTGSPGKTK-------KGELSIIPKKLTLLSPCLHMLPH 396 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~-~~e~~~~~~~~L~~gs~V~V~G~v~~~~-------~g~~El~~~~i~vl~~~~~~~P~ 396 (553)
|..+-++.+.+|++++..... ..++++..++.|+.||+|.|+|+|.+++ +|++||.+++|+||++|..++|+
T Consensus 57 Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~~~lP~ 136 (487)
T 1eov_A 57 FLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPI 136 (487)
T ss_dssp EEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCSSCSS
T ss_pred EEEEEECCccEEEEEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecccccCCc
Confidence 456777888999998753211 2356777889999999999999998876 47899999999999999888998
Q ss_pred cccC--------------CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcc
Q psy11418 397 MHFG--------------VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGAT 460 (553)
Q Consensus 397 ~~~~--------------~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~ 460 (553)
+..+ ..++|+|+++|||||| +|.+++++++||.++++||+||.++||+||+||+|+.++ +||.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr-~~~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~ 215 (487)
T 1eov_A 137 LLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLR-TVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSS 215 (487)
T ss_dssp CHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSC
T ss_pred chhhcccccccccccccccCChhhhhhcceeecC-CHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCcc
Confidence 5431 2688999999999999 999999999999999999999999999999999999986 4455
Q ss_pred eeeeeecCCCCCcceeEEeChhHHHHHh-ccCcceEe----------------cCCCCCCC-------------------
Q psy11418 461 AKPFVTHHNDLNMDLYMRIAPELYLKST-HGSYKVTY----------------HPDGPESG------------------- 504 (553)
Q Consensus 461 ~~~~~t~~~~~~~~~yL~~Spel~~k~l-~~~~~~~~----------------~~e~~~~~------------------- 504 (553)
.|.+. +||.++||+||||||+|++ +++++++| .|||+|+.
T Consensus 216 ~f~~~----~~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~l 291 (487)
T 1eov_A 216 VFEVT----YFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSEL 291 (487)
T ss_dssp CCEEE----ETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHH
T ss_pred cceec----cCCccEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHH
Confidence 55554 6899999999999999997 66677655 46777530
Q ss_pred -----------------------CCcccCCCC--CceeeeHHHHHH--HHhCCCCCCCCCCChHHHHHH
Q psy11418 505 -----------------------SPVEIDFTP--PFRRLHMFPALE--AALGVKLPNPTEFDTPEANKF 546 (553)
Q Consensus 505 -----------------------~~~~~~~~~--~f~rit~~eA~~--~~~g~~~~~~~~~~~~~~~~~ 546 (553)
....+++.. ||.|++|.||++ +..|+++.+..+++.+....+
T Consensus 292 l~~l~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ri~~~ea~~~l~~~g~~~~~~~d~~~~~e~~l 360 (487)
T 1eov_A 292 FVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFL 360 (487)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHSCCCCCCCCTTCCCEEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHH
T ss_pred HHHHHHHHHhhchhHHHhhhhhcCCcceecccCCCeeEEEHHHHHHHHHHhCCCCCcccchhhHHHHHH
Confidence 001123333 899999999986 557888776666665544433
No 30
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=99.96 E-value=2.1e-29 Score=269.99 Aligned_cols=218 Identities=17% Similarity=0.186 Sum_probs=171.9
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEcccccCCC--CceeEEeeeEEEEeccCCCCCc--cccC
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK--GELSIIPKKLTLLSPCLHMLPH--MHFG 400 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~~~~--g~~El~~~~i~vl~~~~~~~P~--~~~~ 400 (553)
|..+-++.+.+|++++.... .++.+..++.|+.||+|.|+|.+.++++ |++||.+++++||++| .++|+ +..
T Consensus 36 F~~lrD~~g~iQ~v~~~~~~--~~~~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~el~~~~~~vl~~~-~~~P~~~~~~- 111 (434)
T 1x54_A 36 FLWIRDSTGIVQAVVAKNVV--GEETFEKAKKLGRESSVIVEGIVKADERAPGGAEVHVEKLEVIQAV-SEFPIPENPE- 111 (434)
T ss_dssp EEEEEETTEEEEEEECHHHH--CHHHHHHHHTCCTTCEEEEEEEEEECTTSGGGEEEEEEEEEEEECC-SCCSSCSSGG-
T ss_pred EEEEEECCEEEEEEEECCcC--CHHHHHHHhcCCCCCEEEEEEEEEecCCCCccEEEEEeEEEEeecC-CCCCCccccc-
Confidence 45666788889999875321 2345667789999999999999998875 5999999999999999 78997 443
Q ss_pred CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEEeC
Q psy11418 401 VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIA 480 (553)
Q Consensus 401 ~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~~S 480 (553)
..+.|+|+++|||||| ++.+++++++||.++++||+||.++||+||+||+|+.+++++...+|.|. ++|.++||+||
T Consensus 112 ~~~~e~r~~~R~Ldlr-~~~~~~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~~~e~~~~~f~~~--~~~~~~~Lr~S 188 (434)
T 1x54_A 112 QASPELLLDYRHLHIR-TPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLK--YFDKYAYLSQS 188 (434)
T ss_dssp GSCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCSSCGGGCCEEE--ETTEEEEECSC
T ss_pred CCCHHHhhhceeeeec-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEeecCCCCceeEEEe--ecCCcEEeccC
Confidence 4788999999999999 99999999999999999999999999999999999988833333334442 88999999999
Q ss_pred hhHHHHHhccCcceEe----------------cCCCCCCC------------------------C------------Ccc
Q psy11418 481 PELYLKSTHGSYKVTY----------------HPDGPESG------------------------S------------PVE 508 (553)
Q Consensus 481 pel~~k~l~~~~~~~~----------------~~e~~~~~------------------------~------------~~~ 508 (553)
||+|+|++++++.++| +|||+++. . ...
T Consensus 189 pel~~~~~~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~ 268 (434)
T 1x54_A 189 AQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDD 268 (434)
T ss_dssp SHHHHHHHHHHHSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSC
T ss_pred hHHHHHHHhcCccceEEEecceecCCCCCcccccEEEEeeEEEcCCCHHHHHHHHHHHHHHHHHHHhhhchhhhhhcCcc
Confidence 9999998766665544 56776530 0 011
Q ss_pred c----CCCCCceeeeHHHHHHHHh--CCCCCCCCCCChHHHHHHHhC
Q psy11418 509 I----DFTPPFRRLHMFPALEAAL--GVKLPNPTEFDTPEANKFLSD 549 (553)
Q Consensus 509 ~----~~~~~f~rit~~eA~~~~~--g~~~~~~~~~~~~~~~~~~~~ 549 (553)
+ .+..||+||||.||++.+. |+++.+..+++.+....+++.
T Consensus 269 ~~~~~~~~~pf~rity~ea~~~~~~~g~~~~~~~dl~~~~e~~l~~~ 315 (434)
T 1x54_A 269 LTTLKNTEPPFPRISYDEAIDILQSKGVNVEWGDDLGADEERVLTEE 315 (434)
T ss_dssp CHHHHTCCSSCCEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHHHTT
T ss_pred cccccccCCCCcEEEHHHHHHHHHhcCCCcccCCccChHHHHHHHHH
Confidence 1 1245999999999999886 666666667777766666553
No 31
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=99.96 E-value=6.6e-30 Score=274.17 Aligned_cols=196 Identities=13% Similarity=0.167 Sum_probs=151.2
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccCCccEEEEEccccc-----CCCCceeEEeeeEEEEeccCC--CCCcc
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK-----TKKGELSIIPKKLTLLSPCLH--MLPHM 397 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~~gs~V~V~G~v~~-----~~~g~~El~~~~i~vl~~~~~--~~P~~ 397 (553)
|..+-++.+.+|++++.. .. +.+. .. .|+.||+|.|+|+|.+ +++|++||.+++++||+++.. .+|+.
T Consensus 32 Fi~LrD~~g~iQvv~~~~-~~--~~~~-~~-~l~~~~~v~v~G~v~~~~~~~~~~g~~El~~~~~~vl~~~~p~~~~pl~ 106 (435)
T 2xgt_A 32 FFILRDGTGFLQVLLMDK-LC--QTYD-AL-TVNTECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVL 106 (435)
T ss_dssp EEEEECSSCEEEEEEEGG-GG--SSHH-HH-HCCTTCEEEEEEEEEECC------TTEEEEEEEEEEEECCCTTHHHHHC
T ss_pred EEEEEECCceEEEEECCc-ch--hHHH-Hh-cCCCCCEEEEEEEEEecCCCcCCCCcEEEEEEEEEEeecCCCccccccc
Confidence 456667888899998742 11 1222 22 6999999999999987 447899999999999998531 12322
Q ss_pred ccCCCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcceeeeeecCCCCCcce
Q psy11418 398 HFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPFVTHHNDLNMDL 475 (553)
Q Consensus 398 ~~~~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~~~~~~t~~~~~~~~~ 475 (553)
.+..++++|+++|||||| +|.++++|++||+++++||+||+++||+||+||+|++++ ||+.+|++. +||.++
T Consensus 107 -~~~~~~e~r~~~R~Ldlr-~~~~~~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~eG~~~~F~~~----~~g~~~ 180 (435)
T 2xgt_A 107 -NEEASVDKMLDNRHLVIR-GENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLD----YFGEQS 180 (435)
T ss_dssp -C--CCHHHHHHTHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCSSCTTSCCEEE----ETTEEE
T ss_pred -ccCCCHHHHhhCeeeeec-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccCCCchhceeec----cCCccc
Confidence 236789999999999998 999999999999999999999999999999999998876 555677665 899999
Q ss_pred eEEeChhHHHHHhccCcceEe----------------cCCCCCCC---------------------------CC------
Q psy11418 476 YMRIAPELYLKSTHGSYKVTY----------------HPDGPESG---------------------------SP------ 506 (553)
Q Consensus 476 yL~~Spel~~k~l~~~~~~~~----------------~~e~~~~~---------------------------~~------ 506 (553)
||++|||||+|++.++++++| +|||+|+. ..
T Consensus 181 ~L~~SpqLylq~l~~g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~d~m~~~E~li~~~~~~v~~~~~~~~~ 260 (435)
T 2xgt_A 181 FLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLADEEAKKL 260 (435)
T ss_dssp EECSCSHHHHHHHHHHHCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred ccCCChHHHHHHhhhccCceEEEecceecCCCCccccccceeEEEEEEecCCHHHHHHHHHHHHHHHHHHHhccccchhh
Confidence 999999999999876776655 66887640 00
Q ss_pred ---cccCCC---CCceeeeHHHHHHHHhCCC
Q psy11418 507 ---VEIDFT---PPFRRLHMFPALEAALGVK 531 (553)
Q Consensus 507 ---~~~~~~---~~f~rit~~eA~~~~~g~~ 531 (553)
..++|. .||+||||.||++.+.+..
T Consensus 261 ~~~~~~~~~~~~~pf~rity~ea~~~~~~~~ 291 (435)
T 2xgt_A 261 LEHINPKFQPPERPFLRMEYKDAIKWLQEHN 291 (435)
T ss_dssp HHHHSTTCCCCCSSCEEEEHHHHHHHHHHTT
T ss_pred hhhccccccccCCCceEEEHHHHHHHHHhcC
Confidence 023432 6999999999999776543
No 32
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=99.95 E-value=7.8e-29 Score=264.61 Aligned_cols=207 Identities=19% Similarity=0.218 Sum_probs=132.2
Q ss_pred HhcccccCCCcccccccccccChHHHHHhhcccC-CccEEEEEcccccCC--CCceeEEeeeEEEEeccCCCCCccccC-
Q psy11418 325 ISGRKEDRNRPCVMANARMYQSEEEFASDLVKIK-RGDIIGVTGSPGKTK--KGELSIIPKKLTLLSPCLHMLPHMHFG- 400 (553)
Q Consensus 325 i~~~~~~~~~iqv~~n~r~~~~~e~~~~~~~~L~-~gs~V~V~G~v~~~~--~g~~El~~~~i~vl~~~~~~~P~~~~~- 400 (553)
|..+-++.+.+|++++. +.|+ .||+|.|+|++.+++ +|++||.+++++||++|..++|++...
T Consensus 33 F~~lrD~~g~iQ~v~~~-------------~~l~~~~~~v~v~G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~ 99 (422)
T 1n9w_A 33 FLLLRDRSGVVQVVTGG-------------LKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKE 99 (422)
T ss_dssp EEEEEETTEEEEEEEES-------------CCCCCTTCEEEEEEEEEECTTSTTSEEEEEEEEEEEECCCSCCC------
T ss_pred EEEEEECCEEEEEEEEc-------------cccCCCCCEEEEEEEEEecCCCCccEEEEEeEEEEeccCCcCCCCCcccc
Confidence 45566777888988863 6799 999999999998887 459999999999999998789976643
Q ss_pred --CCChhhhccccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccCCCcceeeeeecCCCCCcceeEE
Q psy11418 401 --VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMR 478 (553)
Q Consensus 401 --~~~~e~~~~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga~~~~~~t~~~~~~~~~yL~ 478 (553)
..++++|+++|||||| +|.+++++++||.++++||+||.++||+||+||+|+.+++|+...+|.+ +++|.++||+
T Consensus 100 ~~~~~~e~r~~~R~Ldlr-~~~~~~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~~~f~~--~~~g~~~~L~ 176 (422)
T 1n9w_A 100 EWRANPDTLLEYRYVTLR-GEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGV--DYFEKRAYLA 176 (422)
T ss_dssp -----------CHHHHTT-SHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC----------------------------
T ss_pred ccCCCHHHHhhhhHHhhc-CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCceeEEE--eeCCCcEEee
Confidence 4688999999999999 9999999999999999999999999999999999998883333333443 2889999999
Q ss_pred eChhHHHHHhccCcceEe----------------cCCCCCC-----CC--------------------------------
Q psy11418 479 IAPELYLKSTHGSYKVTY----------------HPDGPES-----GS-------------------------------- 505 (553)
Q Consensus 479 ~Spel~~k~l~~~~~~~~----------------~~e~~~~-----~~-------------------------------- 505 (553)
+|||+|+|++++++.++| .|||+|+ ..
T Consensus 177 ~Spel~~~~l~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~ 256 (422)
T 1n9w_A 177 QSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLL 256 (422)
T ss_dssp --CHHHHHHHHHHHSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHT
T ss_pred eCHHHHHHHHhhCCCceeEEeCceECCCCCCCcccceeEEeeeeeeCCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhc
Confidence 999999999876565544 6788763 10
Q ss_pred CcccCCC-CCceeeeHHHHHHHHhCC-CCCCCCCCChHHHHHHH
Q psy11418 506 PVEIDFT-PPFRRLHMFPALEAALGV-KLPNPTEFDTPEANKFL 547 (553)
Q Consensus 506 ~~~~~~~-~~f~rit~~eA~~~~~g~-~~~~~~~~~~~~~~~~~ 547 (553)
...+++. .||+||||.||++.+.+. ++.+..+++.+....+.
T Consensus 257 ~~~~~~~~~pf~rity~eA~~~~~~~~~~~~~~dl~~~~e~~l~ 300 (422)
T 1n9w_A 257 GATWPSFPQDIPRLTHAEAKRILKEELGYPVGQDLSEEAERLLG 300 (422)
T ss_dssp TCCCCCCSSSCCEEEHHHHHHHHHHTSCCCCCSSCCHHHHHHHH
T ss_pred CccccccCCCcceeEHHHHHHHHHhcCCcccccccCcHHHHHHH
Confidence 0112222 699999999999998633 45555566665554443
No 33
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.85 E-value=5.4e-22 Score=202.42 Aligned_cols=171 Identities=16% Similarity=0.268 Sum_probs=132.8
Q ss_pred ecccccCCceeEeeeeEEEeccCCCCCCCCCCCCCCcchhhcccchhhhccHHHHHHHHH-----HHHHHHHHHHHhhhC
Q psy11418 154 SPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIV-----RAQIIAYVRRYLDSL 228 (553)
Q Consensus 154 ~~~~t~~ge~~l~~~~i~il~~~~~~lP~~~~~l~~~e~r~~~R~ldl~~~~~~~~~~~~-----rs~i~~~ir~fl~~~ 228 (553)
...+..+|++||++++|++|++|..++|.+. .+...++++||||+| ++.+.++++. ++++.+.+|++|.+.
T Consensus 18 ~~~~~~~~~~ei~~~~~~vl~~a~~~~P~~~---~~~~~~l~~r~l~~R-~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~ 93 (290)
T 3qtc_A 18 SHGASAPALTKSQTDRLEVLLNPKDEISLNS---GKPFRELESELLSRR-KKDLQQIYAEERENYLGKLEREITRFFVDR 93 (290)
T ss_dssp ------CCCCHHHHHHHHHHCCTTCC----C---CSCHHHHHHHHHHHH-HHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred ccccCCCceEEEEhhhhhhhccCCCCCCCCc---chhhhhhhhHHHHhc-cchHHHHhccccccHHHHHHHHHHHHHHHC
Confidence 3456678999999999999999988888653 222348999999997 7999999999 999999999999999
Q ss_pred CeEEEecceecccc-----CCCCCcceeeccCCCCcceeee--eCHHHHHHHHHH----ccCCcEEEEccccccCCCCCC
Q psy11418 229 GFLEVETPMMNMIA-----GGATAKPFVTHHNDLNMDLYMR--IAPELYLKMLVV----GGLDRVYEVGRQFRNEGIDLT 297 (553)
Q Consensus 229 gF~EV~TPil~~~~-----gga~a~~F~t~~~~~~~~~~L~--~Spql~lk~l~~----~g~~rVfei~~~FR~E~~~~~ 297 (553)
||.||.||+|++.. +.....|+.....+++...+|| ++|+++...... .+..|+||||+|||+|..+.+
T Consensus 94 Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rlfeiG~vFR~E~~~~~ 173 (290)
T 3qtc_A 94 GFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKE 173 (290)
T ss_dssp TCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEEEEEEEEECCCSCSSS
T ss_pred CCEEEECCceeeHHHHHhcCCCcCCchhhhheeeCCCeeEcccChHHHHHHHHHhhccCCCCeEEEEEcCEEecCCCCCc
Confidence 99999999997432 1111123322233556789999 999999554332 455799999999999988889
Q ss_pred ccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 298 HNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 298 H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
|++||||+|+++++. ++.++..++++++..+
T Consensus 174 ~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~l 206 (290)
T 3qtc_A 174 HLEEFTMLVFWQMGSGCTRENLESIITDFLNHL 206 (290)
T ss_dssp CCSEEEEEEEEEESTTCCHHHHHHHHHHHHHHH
T ss_pred CcchheEEEEEEEcCChHHHHHHHHHHHHHHHc
Confidence 999999999999987 5999999999999877
No 34
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=99.79 E-value=9.2e-20 Score=189.70 Aligned_cols=126 Identities=23% Similarity=0.322 Sum_probs=92.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC-CCcceeeeeecCCCCC------cceeEEeChhHHHHH-hc
Q psy11418 418 NERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-GGATAKPFVTHHNDLN------MDLYMRIAPELYLKS-TH 489 (553)
Q Consensus 418 ~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~-~ga~~~~~~t~~~~~~------~~~yL~~Spel~~k~-l~ 489 (553)
++ .+++|++||+++++||+||.++||+||+||+|++++ +||.+.||.|+ ||+ .++||+||||||+|+ ++
T Consensus 30 ~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~--~~~~~~~~~~~~yL~~Spql~~k~l~~ 106 (345)
T 3a5y_A 30 SA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETR--FVGPGHSQGMNLWLMTSPEYHMKRLLV 106 (345)
T ss_dssp SS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEE--ECCSTTSCCEEEEECSCSHHHHHHHHH
T ss_pred ch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEE--ecCcccccCCCEeecCCHHHHHHHHHH
Confidence 54 889999999999999999999999999999999888 66788888876 554 789999999999996 47
Q ss_pred cCcceEe---------------cCCCCCCCC-----Cc-------------ccCCCCCceeeeHHHHHHHHhCCCCCCCC
Q psy11418 490 GSYKVTY---------------HPDGPESGS-----PV-------------EIDFTPPFRRLHMFPALEAALGVKLPNPT 536 (553)
Q Consensus 490 ~~~~~~~---------------~~e~~~~~~-----~~-------------~~~~~~~f~rit~~eA~~~~~g~~~~~~~ 536 (553)
++++++| +|||+|+.. .. .+.+ .||+||||.|||.+|+|+|.+..
T Consensus 107 ~g~~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~v~~~-~~~~rity~ea~~~~~g~d~~~~- 184 (345)
T 3a5y_A 107 AGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDC-PAAESLSYQQAFLRYLEIDPLSA- 184 (345)
T ss_dssp TTCCSEEEEEEEECCCCCBTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHCC-CCCEEEEHHHHHHHHTCCCTTCC-
T ss_pred cCCCcEEEEEcceeCCCCcccccchhheeeeeeeCCCHHHHHHHHHHHHHHHHcC-CCCcEeeHHHHHHHHhCCCCCCC-
Confidence 7777755 777776410 00 0111 38999999999999999986542
Q ss_pred CCChHHHHHHHhCC
Q psy11418 537 EFDTPEANKFLSDP 550 (553)
Q Consensus 537 ~~~~~~~~~~~~~~ 550 (553)
+.+++.+++.+.
T Consensus 185 --~~~~l~~~~~~~ 196 (345)
T 3a5y_A 185 --DKTQLREVAAKL 196 (345)
T ss_dssp --C-----------
T ss_pred --CHHHHHHHHHHc
Confidence 334445444443
No 35
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.58 E-value=1.1e-15 Score=156.10 Aligned_cols=81 Identities=15% Similarity=0.148 Sum_probs=68.5
Q ss_pred cccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeecc--------C-CCcceeeeeecCCCCCcceeEEe
Q psy11418 409 RQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI--------A-GGATAKPFVTHHNDLNMDLYMRI 479 (553)
Q Consensus 409 ~~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~--------~-~ga~~~~~~t~~~~~~~~~yL~~ 479 (553)
+||||+|| ++ +++++++|+.++++||+||.++||+||+||+|+.+ . +||. +|.+. ++|.++||++
T Consensus 1 ~~r~l~lr-~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~a~--~f~~~--~~~~~~~L~~ 74 (294)
T 1nnh_A 1 MNAVEIIS-RE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGME--PAEVE--IYGVKMRLTH 74 (294)
T ss_dssp -CHHHHHT-SC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCCCC--CCEEE--ETTEEEEECS
T ss_pred CchHHhhh-cc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCcce--eEEEE--cCCCCEEecc
Confidence 48999999 88 99999999999999999999999999999999999 5 4444 44443 7899999999
Q ss_pred ChhHHHHHhc-cCcceE
Q psy11418 480 APELYLKSTH-GSYKVT 495 (553)
Q Consensus 480 Spel~~k~l~-~~~~~~ 495 (553)
|||+|+|++. +++.++
T Consensus 75 Spe~~~~~l~~~g~~rv 91 (294)
T 1nnh_A 75 SMILHKQLAIAMGLKKI 91 (294)
T ss_dssp CSHHHHHHHHHTTCCEE
T ss_pred ChHHHHHHHhhcCccce
Confidence 9999999973 335443
No 36
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.20 E-value=2.1e-11 Score=124.27 Aligned_cols=115 Identities=16% Similarity=0.103 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhhhCCeEEEecceeccccCCCCCcceeecc--------CCCCcceeeeeCHHHHHHHHHHcc----CCcE
Q psy11418 215 AQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHH--------NDLNMDLYMRIAPELYLKMLVVGG----LDRV 282 (553)
Q Consensus 215 s~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~--------~~~~~~~~L~~Spql~lk~l~~~g----~~rV 282 (553)
+.+.+.+|++|...||.||++|.+.+...+..+..|...+ -+++...+||+|.--.+.++++.+ -.|+
T Consensus 56 ~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~e~~vLRtsl~p~ll~~l~~N~~~~~~ri 135 (294)
T 2rhq_A 56 TRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEKRNGQGPVKI 135 (294)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSSSSEEECSSSHHHHHHHHHHTTTCSCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEcCcceeeccCHHHHHHHHHhcCCCCCccE
Confidence 4567899999999999999999996532211111121111 122345679988888888888877 5699
Q ss_pred EEEccccccCCCCCCccCCcceeeeEecc--CCHHHHHHHHHHHHhccc
Q psy11418 283 YEVGRQFRNEGIDLTHNPEFTTCEFYMAY--ADYNDLMHLTEDLISGRK 329 (553)
Q Consensus 283 fei~~~FR~E~~~~~H~~EFt~lE~e~a~--~~~~~~m~~~e~li~~~~ 329 (553)
||||+|||+++.+.+|+|||+|||+++++ .|+.|++..+|.++..++
T Consensus 136 FEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l~ 184 (294)
T 2rhq_A 136 ICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLF 184 (294)
T ss_dssp EEEEEEECCCCCBTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEcCEEecCCCCCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 99999999988788899999999999998 589999999999998774
No 37
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=99.07 E-value=3e-10 Score=118.13 Aligned_cols=114 Identities=20% Similarity=0.144 Sum_probs=83.6
Q ss_pred HHHHHHHHHhhhCCeEEEecceeccccC--CC-----------CCcceeeccCCC----------CcceeeeeCHHHHHH
Q psy11418 216 QIIAYVRRYLDSLGFLEVETPMMNMIAG--GA-----------TAKPFVTHHNDL----------NMDLYMRIAPELYLK 272 (553)
Q Consensus 216 ~i~~~ir~fl~~~gF~EV~TPil~~~~g--ga-----------~a~~F~t~~~~~----------~~~~~L~~Spql~lk 272 (553)
.+.+.||++|...||.||.+|.+.+... .+ ..++|......- .....||.+.--.+-
T Consensus 105 ~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp~ll 184 (350)
T 1b7y_A 105 LMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQV 184 (350)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHHHH
T ss_pred HHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchHHHH
Confidence 4568899999999999999999964211 00 022343321111 134567765544444
Q ss_pred HHHHccC--CcEEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhccc
Q psy11418 273 MLVVGGL--DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGRK 329 (553)
Q Consensus 273 ~l~~~g~--~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~~ 329 (553)
+++..+- -|+|+||+|||+|..|.+|+|||+|+|++.++. |+.|++..++.+++.++
T Consensus 185 r~l~~~~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~lf 245 (350)
T 1b7y_A 185 RYMVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALF 245 (350)
T ss_dssp HHHHHCCSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHS
T ss_pred HHHHhcCCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhhc
Confidence 6666543 389999999999988889999999999999987 89999999999999884
No 38
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=98.99 E-value=2.9e-11 Score=123.01 Aligned_cols=111 Identities=13% Similarity=0.209 Sum_probs=84.7
Q ss_pred CCCCceeEEeeeEEEEeccCCCCCccccCCCChhhhccccceeeecChHHHHHHHH-----HHHHHHHHHHHHHhCCcEE
Q psy11418 372 TKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIV-----RAQIIAYVRRYLDSLGFLE 446 (553)
Q Consensus 372 ~~~g~~El~~~~i~vl~~~~~~~P~~~~~~~~~e~~~~~R~L~lR~~~~~~~~l~~-----Rs~i~~~iR~f~~~~~F~E 446 (553)
..+|++||.+++|+||++|..++|++..+. ..++++|||++| ++.+.++++. ++++.+.||++|.++||.|
T Consensus 22 ~~~~~~ei~~~~~~vl~~a~~~~P~~~~~~---~~~l~~r~l~~R-~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~E 97 (290)
T 3qtc_A 22 SAPALTKSQTDRLEVLLNPKDEISLNSGKP---FRELESELLSRR-KKDLQQIYAEERENYLGKLEREITRFFVDRGFLE 97 (290)
T ss_dssp --CCCCHHHHHHHHHHCCTTCC----CCSC---HHHHHHHHHHHH-HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCceEEEEhhhhhhhccCCCCCCCCcchh---hhhhhhHHHHhc-cchHHHHhccccccHHHHHHHHHHHHHHHCCCEE
Confidence 347999999999999999988889876442 348999999999 9999999999 9999999999999999999
Q ss_pred eeCceeeccC-C---Cc-ceeeeeecCCCCCcceeEE--eChhHHHH
Q psy11418 447 VETPMMNMIA-G---GA-TAKPFVTHHNDLNMDLYMR--IAPELYLK 486 (553)
Q Consensus 447 V~TPiL~~~~-~---ga-~~~~~~t~~~~~~~~~yL~--~Spel~~k 486 (553)
|+||+|++.. . +. .--|+.....+|+...+|+ +||+++..
T Consensus 98 V~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~LR~slsp~L~~~ 144 (290)
T 3qtc_A 98 IKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLTPNLYNY 144 (290)
T ss_dssp ECCCSEEETHHHHHTTCCTTSSGGGGCCEETTTEEECSCSHHHHHHH
T ss_pred EECCceeeHHHHHhcCCCcCCchhhhheeeCCCeeEcccChHHHHHH
Confidence 9999999775 1 10 0011111123556789999 88999943
No 39
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=98.93 E-value=1.5e-09 Score=110.19 Aligned_cols=118 Identities=20% Similarity=0.242 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhhhCCeEEEecceecccc----CCCCCc-ceeeccCCCCcceeeee--CHHHHH-HHHHHccCC---cE
Q psy11418 214 RAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGATAK-PFVTHHNDLNMDLYMRI--APELYL-KMLVVGGLD---RV 282 (553)
Q Consensus 214 rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga~a~-~F~t~~~~~~~~~~L~~--Spql~l-k~l~~~g~~---rV 282 (553)
..++.+.+|++|...||.||.||.|.+.. .|...+ .+....+..+.+++||. +|.+.. -+.....-+ |+
T Consensus 73 ~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~~~~Plrl 152 (288)
T 3dsq_A 73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIRI 152 (288)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeecccccchhhhhcChHHHHHHHHHHHhCCCCCEEE
Confidence 46889999999999999999999996421 111111 22222234456789994 465542 112222233 89
Q ss_pred EEEccccccCCCCCCccCCcceeeeEeccC----CHHHHHHHHHHHHhcccccCC
Q psy11418 283 YEVGRQFRNEGIDLTHNPEFTTCEFYMAYA----DYNDLMHLTEDLISGRKEDRN 333 (553)
Q Consensus 283 fei~~~FR~E~~~~~H~~EFt~lE~e~a~~----~~~~~m~~~e~li~~~~~~~~ 333 (553)
|++|+|||+|..+..|.+||+|+|++.... ++.++..+++++++.+ ++.
T Consensus 153 feiG~vFR~E~~~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~L--Gl~ 205 (288)
T 3dsq_A 153 FEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAA--GIR 205 (288)
T ss_dssp EEEEEEECSCCSSSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHH--TCC
T ss_pred EEEeeEEecCCCCCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHc--CCC
Confidence 999999999999999999999999998775 4889999999999888 553
No 40
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=98.67 E-value=1.1e-07 Score=98.72 Aligned_cols=130 Identities=16% Similarity=0.100 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccc-------cC-C-C-CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC-
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMI-------AG-G-A-TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL- 279 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-------~g-g-a-~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~- 279 (553)
.+.+..|.+.+|+.|...||.||.||++.+. .| + . ..+.|.. .+.-|..+.||.-.....-++++...
T Consensus 36 ~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~-~D~~g~~l~LRpd~T~~~aR~~~~~~~ 114 (344)
T 1z7m_A 36 VKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQF-IKHEGQSITLRYDFTLPLVRLYSQIKD 114 (344)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEE-ECTTCCEEEECCCSHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEE-ECCCCCEEecCCCCcHHHHHHHHhcCC
Confidence 4678899999999999999999999999532 12 1 1 2244432 24567889999777777777665532
Q ss_pred ---CcEEEEccccccCCCCCCccCCcceeeeEeccCCH----HHHHHHHHHHHhcccccCCCccccccccc
Q psy11418 280 ---DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADY----NDLMHLTEDLISGRKEDRNRPCVMANARM 343 (553)
Q Consensus 280 ---~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~~----~~~m~~~e~li~~~~~~~~~iqv~~n~r~ 343 (553)
-|.|+||++||+|.++..|..||+|+++|.-..+- .+++.++.++++.+ ++...++..|.+.
T Consensus 115 ~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~~~aDaEvi~l~~~~l~~l--gl~~~~i~l~~~g 183 (344)
T 1z7m_A 115 STSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQL--GLNKTVFEIGSAK 183 (344)
T ss_dssp CCCEEEEEEEECCCCCC-------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHHH--TCSSEEEEEEEHH
T ss_pred CCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCCCcHHHHHHHHHHHHHHHHC--CCCcEEEEECCHH
Confidence 39999999999998888899999999999987752 58888888888887 6666777777653
No 41
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=98.58 E-value=1.7e-07 Score=99.35 Aligned_cols=131 Identities=14% Similarity=0.133 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccc-----cCCC-CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC-----
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMI-----AGGA-TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL----- 279 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-----~gga-~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~----- 279 (553)
.+++..|.+.+|+.|..+||.||.||++... .|+. ..+.|.. .+.-|..+.||.-.....-++++..+
T Consensus 24 ~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f-~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~ 102 (400)
T 3od1_A 24 YKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKL-LDQQGNTLVLRPDMTAPIARLVASSLKDRAY 102 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEE-ECTTSCEEEECSCSHHHHHHHHHHHCSSSCS
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEE-ECCCCCEEEECCCCHHHHHHHHHhhcccCCC
Confidence 4678899999999999999999999999432 1221 2234443 24557788899776666666655432
Q ss_pred -CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCcccccccccc
Q psy11418 280 -DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANARMY 344 (553)
Q Consensus 280 -~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~ 344 (553)
-|.|++|+|||+|.+...|..||+|+++|.-..+ -.+++.++-++++.+ ++...++..|.+.+
T Consensus 103 P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~l--gl~~~~i~l~~~~i 170 (400)
T 3od1_A 103 PLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDGTASADGEVIALMIAALKRA--GLSEFKVAIGHVGY 170 (400)
T ss_dssp CEEEEEEEEEECCCC---CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHT--TCCSEEEEEEEHHH
T ss_pred CeEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCCChHhHHHHHHHHHHHHHHC--CCCceEEEecCHHH
Confidence 2999999999999888889999999999997764 357888888888887 66677788877653
No 42
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=98.52 E-value=1.9e-07 Score=100.62 Aligned_cols=131 Identities=15% Similarity=0.156 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceecccc------CCC-CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC----
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA------GGA-TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL---- 279 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~------gga-~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~---- 279 (553)
.+++..|.+.+|+.|...||.||.||++...+ |.. ..+.|.. .+.-|..+.||.-.....-++++...
T Consensus 43 ~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f-~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~ 121 (456)
T 3lc0_A 43 MRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNF-ITKGGHRVALRPEMTPSLARLLLGKGRSLL 121 (456)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEE-ECSSSCEEEECSCSHHHHHHHHHHSCTTCC
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEE-EcCCCCEEecCCcCHHHHHHHHHhcCcccC
Confidence 36788999999999999999999999995321 221 1234432 24567788899777666666665532
Q ss_pred --CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccC--CCcccccccccc
Q psy11418 280 --DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDR--NRPCVMANARMY 344 (553)
Q Consensus 280 --~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~--~~iqv~~n~r~~ 344 (553)
-|.|+||+|||+|.+...|..||+|+++|.-..+ ..+++.++.+++..+ ++ +..++..|.+.+
T Consensus 122 ~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~l--gl~~~~~~i~in~~~i 192 (456)
T 3lc0_A 122 LPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSL--GLSSKDVGIKVNSRKV 192 (456)
T ss_dssp SSEEEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHHT--TCCTTTEEEEEEEHHH
T ss_pred CCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHHc--CCCCCceEEEEcCHHH
Confidence 3899999999999988889999999999997653 357888888888887 66 567788877543
No 43
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=98.49 E-value=2.2e-07 Score=100.44 Aligned_cols=131 Identities=15% Similarity=0.201 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceec------cccCCCCCc-ceeeccCC---------------CCcceeeeeCH
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMN------MIAGGATAK-PFVTHHND---------------LNMDLYMRIAP 267 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~------~~~gga~a~-~F~t~~~~---------------~~~~~~L~~Sp 267 (553)
-...|..|.+.+|+.|..+||.||.||++. .. |....+ .|... +. -+..+.||.-.
T Consensus 25 ~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G~~~ke~m~~~~-d~~~~g~~~~~~~~~~~~g~~l~LRpd~ 102 (465)
T 3net_A 25 EKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-GNQGDNIIYGLE-PILPPNRQAEKDKSGDTGSEARALKFDQ 102 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-GCC--CBEEEEE-EEC----------------CCEEECSCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-CCCCccceEEEe-cccccccccccccccCCCCCEEEeCCCC
Confidence 346788999999999999999999999993 23 422223 45432 22 26788999777
Q ss_pred HHHHHHHHHccC------CcEEEEccccccCCCCCCccCCcceeeeEeccCC------HHHHHHHHHHHHhcccccCCCc
Q psy11418 268 ELYLKMLVVGGL------DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD------YNDLMHLTEDLISGRKEDRNRP 335 (553)
Q Consensus 268 ql~lk~l~~~g~------~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~------~~~~m~~~e~li~~~~~~~~~i 335 (553)
....-++++... -|.|++|+|||.|.....|..||+|+++|.-..+ -.|++.++-++++.+ ++...
T Consensus 103 T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~l~~~~l~~l--gl~~~ 180 (465)
T 3net_A 103 TVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAV--NIGDF 180 (465)
T ss_dssp HHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHH--TCSCE
T ss_pred hHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCCCccchhhHHHHHHHHHHHHHc--CCCce
Confidence 777766655432 2999999999999988889999999999987653 236999999999888 67778
Q ss_pred ccccccccc
Q psy11418 336 CVMANARMY 344 (553)
Q Consensus 336 qv~~n~r~~ 344 (553)
++..|.+.+
T Consensus 181 ~i~in~~~~ 189 (465)
T 3net_A 181 VIRINNRKV 189 (465)
T ss_dssp EEEEEEHHH
T ss_pred EEEECCHHH
Confidence 888886543
No 44
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=98.49 E-value=5e-07 Score=96.64 Aligned_cols=130 Identities=12% Similarity=0.141 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc------cCCC-CCcceeeccCCCCcceeeeeCHHHHHHHHHHcc----
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI------AGGA-TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG---- 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~------~gga-~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g---- 278 (553)
-.+++..|.+.+|+.|...||.||.||++.+. .|.. ..+.|.. .+.-|..+.||.-.....-++++..
T Consensus 19 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~-~D~~g~~l~LrPd~t~~~aR~~~~~~~~~ 97 (434)
T 1wu7_A 19 DMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSF-VDKGGREVTLIPEATPSTVRMVTSRKDLQ 97 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEE-ECTTSCEEEECSCSHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEE-ECCCCCEEEeCCCChHHHHHHHHhcCCCC
Confidence 34688899999999999999999999999642 2221 1234432 2456788999987777777766643
Q ss_pred C-CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCC-cccccccc
Q psy11418 279 L-DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNR-PCVMANAR 342 (553)
Q Consensus 279 ~-~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~-iqv~~n~r 342 (553)
+ -|.|+||++||+|.+...+..||+|+++|.-..+ ..+++.++.+++..+ +++. ..+..|.+
T Consensus 98 lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~~~~ad~E~i~~~~~~l~~l--gl~~~~~i~l~~~ 165 (434)
T 1wu7_A 98 RPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDRL--GLQDIYEIRINSR 165 (434)
T ss_dssp SSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHT--TTTTSEEEEEEEH
T ss_pred CCeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCCChHhhHHHHHHHHHHHHHc--CCCCceEEEECCh
Confidence 2 3999999999999887778999999999998765 256777777777776 5544 56666643
No 45
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=98.48 E-value=2e-07 Score=99.09 Aligned_cols=129 Identities=11% Similarity=0.122 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc------cCCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHc--
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI------AGGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG-- 277 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~------~gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~-- 277 (553)
-.+++..|.+.+|+.|...||.||.||+|.+. .||. .-+.|.. .+.-|..++||.-.+...-++++.
T Consensus 15 ~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~-~D~~g~~~~Lrp~~t~~~~r~~~~~~ 93 (420)
T 1qe0_A 15 DSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTF-KDKGDRSITLRPEGTAAVVRSYIEHK 93 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEE-CHHHHCCEEECSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEE-EcCCCCEEEeCCCChHHHHHHHHhcc
Confidence 34688999999999999999999999999642 1221 1133432 122356789997766666555542
Q ss_pred -----cC-CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCccccccc
Q psy11418 278 -----GL-DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANA 341 (553)
Q Consensus 278 -----g~-~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~ 341 (553)
.+ -|+|++|+|||+|.....|..||+|+|+|....+ -.+++.++.+++..+ ++....+..|.
T Consensus 94 ~~~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~~l--gl~~~~i~l~~ 165 (420)
T 1qe0_A 94 MQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSF--GLKHLKLVINS 165 (420)
T ss_dssp GGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHHT--TCCCEEEEEEE
T ss_pred ccccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCCCchhHHHHHHHHHHHHHHc--CCCceEEEEcc
Confidence 22 3999999999999877778999999999998774 267888888888877 55555566654
No 46
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=98.48 E-value=2.4e-07 Score=98.07 Aligned_cols=127 Identities=20% Similarity=0.202 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHcc---
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG--- 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g--- 278 (553)
-.+++..|.+.+|+.|.+.||.||.||+|.+.+ +|- .-+.|. .+.-+.+++||...+...-+++...
T Consensus 29 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~--~d~~~~~~~LrP~~~~~~~~~~~~~~~s 106 (401)
T 1evl_A 29 GWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT--TSSENREYCIKPMNCPGHVQIFNQGLKS 106 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCE--EEETTEEEEECSCSHHHHHHHHTSSCCB
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEe--EecCCceEEEcCCCCHHHHHHHHhhhhh
Confidence 346888999999999999999999999996432 221 123444 2344678999988877776665533
Q ss_pred ---C-CcEEEEccccccCCCC--CC--ccCCcceeeeEeccCC-------HHHHHHHHHHHHhcccccCCCccccccc
Q psy11418 279 ---L-DRVYEVGRQFRNEGID--LT--HNPEFTTCEFYMAYAD-------YNDLMHLTEDLISGRKEDRNRPCVMANA 341 (553)
Q Consensus 279 ---~-~rVfei~~~FR~E~~~--~~--H~~EFt~lE~e~a~~~-------~~~~m~~~e~li~~~~~~~~~iqv~~n~ 341 (553)
+ -|+|+||+|||+|... .. +..||+|+|+|. |.+ +++++++..+++..+ ++....+..+.
T Consensus 107 ~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~-f~~~~~~~~e~~e~i~~~~~~~~~l--gl~~~~~~~~~ 181 (401)
T 1evl_A 107 YRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCIRLVYDMYSTF--GFEKIVVKLST 181 (401)
T ss_dssp GGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHHHHHHHTT--TCSCCEEEEEC
T ss_pred hhhCChhhccccceecCCCCcccccccccCcEEecceEE-eCCHHHHHHHHHHHHHHHHHHHHHc--CCCceEEEEec
Confidence 2 2999999999999973 23 889999999995 554 224666777777665 44334444443
No 47
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=98.48 E-value=3e-07 Score=99.42 Aligned_cols=131 Identities=14% Similarity=0.158 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc------CCC----CCcceeeccCCC-CcceeeeeCHHHHHHHHHHcc
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA------GGA----TAKPFVTHHNDL-NMDLYMRIAPELYLKMLVVGG 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~------gga----~a~~F~t~~~~~-~~~~~L~~Spql~lk~l~~~g 278 (553)
-.+++..|.+.+|+.|..+||.||.||+|...+ |.. ..+.|.. .+.- |..+.||.-.....-++++..
T Consensus 45 ~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~-~D~~~g~~l~LRPd~t~~~ar~~~~~ 123 (467)
T 4e51_A 45 DAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSF-VDALNGENLTLRPENTAAVVRAAIEH 123 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEE-ECTTTCCEEEECSCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEE-ecCCCCCEEEeCcccHHHHHHHHHHc
Confidence 346889999999999999999999999995321 321 1234533 2344 778999977777776665532
Q ss_pred -C-----CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCccccccccc
Q psy11418 279 -L-----DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANARM 343 (553)
Q Consensus 279 -~-----~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~ 343 (553)
. -|.|++|+|||+|.+...+..||+|+++|.-..+ ..+++.++.++++.+ ++...++..|.+.
T Consensus 124 ~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~~l--Gl~~~~i~in~~g 196 (467)
T 4e51_A 124 NMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWEDL--GLTGIKLEINSLG 196 (467)
T ss_dssp TTTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHHHH--TCCCEEEEEEECC
T ss_pred ccccCCCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCCChHHHHHHHHHHHHHHHHc--CCCceEEEEeCCC
Confidence 1 3999999999999988888999999999987653 367888998888888 6766777777643
No 48
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=98.46 E-value=5.1e-07 Score=94.83 Aligned_cols=131 Identities=9% Similarity=0.047 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccc-----cCCC-C-CcceeeccCCCCcceeeeeCHHHHHHHHHHcc-----
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMI-----AGGA-T-AKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG----- 278 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-----~gga-~-a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g----- 278 (553)
.+++..|...+|+.|..+||.||.||++... .|+. . .+.|.. .+.-|..+.||.-.....-++++..
T Consensus 37 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~-~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~ 115 (373)
T 3rac_A 37 AKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRL-FDGGGDAVALRPEMTPSIARMAAPRVAAGR 115 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBC-CCCSSSCEEECSSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEE-ECCCCCEEEECCcCHHHHHHHHHhccccCC
Confidence 4578889999999999999999999999532 1221 1 234432 2445778889976655555555432
Q ss_pred -CCcEEEEccccccCCC------CCCccCCcceeeeEeccCC-----HHHHHHHHHHHHhcccccCCCcccccccccc
Q psy11418 279 -LDRVYEVGRQFRNEGI------DLTHNPEFTTCEFYMAYAD-----YNDLMHLTEDLISGRKEDRNRPCVMANARMY 344 (553)
Q Consensus 279 -~~rVfei~~~FR~E~~------~~~H~~EFt~lE~e~a~~~-----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~~ 344 (553)
--|.|+||++||+|.. ...|..||+|+++|.-..+ -.+++.++-+++..+ ++...++..|.+.+
T Consensus 116 ~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~~l--gl~~~~i~l~~~~i 191 (373)
T 3rac_A 116 TPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAAA--GVRHHRIVVSHARL 191 (373)
T ss_dssp CCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHH--TCCSCEEEEEETTH
T ss_pred CCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHHHc--CCCceEEEecCHHH
Confidence 2499999999999988 6678899999999997654 157888888888887 67677788877654
No 49
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=98.45 E-value=3.4e-07 Score=98.77 Aligned_cols=107 Identities=16% Similarity=0.159 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeC---HHHHHHHHHHc
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIA---PELYLKMLVVG 277 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~S---pql~lk~l~~~ 277 (553)
.-.+++.+|.+.+|+.|...||.||.||+|.+.+ +|. .-+.|.. .+.-+.+++||.. +-..+-+..+.
T Consensus 65 ~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~-~d~~~~~~~LrPt~ee~t~~i~r~~~~ 143 (458)
T 2i4l_A 65 LGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRI-ADRHKRELLYGPTNEEMITEIFRAYIK 143 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEE-ECTTCCEEEECSCCHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEE-EeCCCCeEEECCCChHHHHHHHHHHHh
Confidence 3467899999999999999999999999996432 221 1233432 2445788999973 22233333333
Q ss_pred cC----CcEEEEccccccC-CCCCC--ccCCcceeeeEeccCCHHH
Q psy11418 278 GL----DRVYEVGRQFRNE-GIDLT--HNPEFTTCEFYMAYADYND 316 (553)
Q Consensus 278 g~----~rVfei~~~FR~E-~~~~~--H~~EFt~lE~e~a~~~~~~ 316 (553)
.. -|+|+||+|||+| ..... +..||+|+|+|....+..+
T Consensus 144 s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ 189 (458)
T 2i4l_A 144 SYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAG 189 (458)
T ss_dssp BGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHH
T ss_pred hccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHH
Confidence 33 3999999999999 44334 8899999999998766443
No 50
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=98.40 E-value=1.2e-06 Score=93.15 Aligned_cols=128 Identities=19% Similarity=0.244 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceecccc----C-CC-----CCcceeeccCCCCcceeeeeCHHHHHHHHHHcc-C
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----G-GA-----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG-L 279 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----g-ga-----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g-~ 279 (553)
.+++..|.+.+|+.|...||.||.||++.+.+ + |. .-+.|.. .+.-|..+.||.-.....-++++.. +
T Consensus 17 ~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~-~D~~g~~l~Lrpd~t~~~ar~~~~~~~ 95 (421)
T 1h4v_B 17 LRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTF-QDRGGRSLTLRPEGTAAMVRAYLEHGM 95 (421)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEE-ECCCCCEEeeCCcchHHHHHHHHhccc
Confidence 46788999999999999999999999996421 1 22 1134433 2456788999977766666655532 2
Q ss_pred ------CcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCccccccc
Q psy11418 280 ------DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANA 341 (553)
Q Consensus 280 ------~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~ 341 (553)
-|.|+||++||+|.....+..||+|+++|.-..+ ..+++.++.+++..+ ++....+..|.
T Consensus 96 ~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~~l--gl~~~~i~i~~ 165 (421)
T 1h4v_B 96 KVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKEL--GLRRLKVKLSS 165 (421)
T ss_pred cccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCCChhhhHHHHHHHHHHHHHc--CCCceEEEEcC
Confidence 3999999999999877778999999999997764 236777777777776 55556666665
No 51
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=98.36 E-value=8.1e-07 Score=91.36 Aligned_cols=114 Identities=19% Similarity=0.239 Sum_probs=79.3
Q ss_pred HHHHHHHHHhhhCCeEEEecceeccccCCCCC------cceee--ccCCCCcceeeeeCHHHHHHHHHHccCC--cEEEE
Q psy11418 216 QIIAYVRRYLDSLGFLEVETPMMNMIAGGATA------KPFVT--HHNDLNMDLYMRIAPELYLKMLVVGGLD--RVYEV 285 (553)
Q Consensus 216 ~i~~~ir~fl~~~gF~EV~TPil~~~~gga~a------~~F~t--~~~~~~~~~~L~~Spql~lk~l~~~g~~--rVfei 285 (553)
.+.+.||++|...||.|+.+|.+.+..-.-.+ .|-.. ..-+.+....||.+.--.+-+.+..+-. |+|++
T Consensus 111 ~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~e~~vLRThtsp~~lr~l~~~~~pirifei 190 (327)
T 3pco_A 111 RTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDTTRLLRTQTSGVQIRTMKAQQPPIRIIAP 190 (327)
T ss_dssp HHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSSSSCEECSCTHHHHHHHHTTCCSSCCBCCE
T ss_pred HHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeCCCceecccCCHHHHHHHHhCCCCeeEEee
Confidence 35688999999999999999988543211000 01000 0012334456885543333444555444 99999
Q ss_pred ccccccCCCCCCccCCcceeeeEecc--CCHHHHHHHHHHHHhcccc
Q psy11418 286 GRQFRNEGIDLTHNPEFTTCEFYMAY--ADYNDLMHLTEDLISGRKE 330 (553)
Q Consensus 286 ~~~FR~E~~~~~H~~EFt~lE~e~a~--~~~~~~m~~~e~li~~~~~ 330 (553)
|+|||++ .|.+|+|+|+|+|..... .++.|+...+|.+++.++.
T Consensus 191 GrVyR~d-~d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lfg 236 (327)
T 3pco_A 191 GRVYRND-YDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFE 236 (327)
T ss_dssp ECCBCSC-CBTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHHC
T ss_pred ccEEecC-CCcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHhC
Confidence 9999998 688999999999988774 4799999999999999853
No 52
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=98.35 E-value=8.7e-07 Score=96.94 Aligned_cols=132 Identities=17% Similarity=0.258 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc-----cCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHccC---Cc
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI-----AGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL---DR 281 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-----~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~---~r 281 (553)
-.++|..|.+.+|+.|..+||.||.||++.+. ..|...+...+..+.-|..+.||.-.....-|+++..- -|
T Consensus 80 ~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~g~~l~LRPd~T~~~aR~~~~~~~~p~k 159 (517)
T 4g85_A 80 QMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNIK 159 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTTSCCEEECSCSHHHHHHHHHHTTCSCEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCCCCEEEeCCcCcHHHHHHHHhCCCCCce
Confidence 45788999999999999999999999999532 12222222222335567888999755555555544321 28
Q ss_pred EEEEccccccCCCCC--CccCCcceeeeEeccC-C----HHHHHHHHHHHHhcccccCCCccccccccc
Q psy11418 282 VYEVGRQFRNEGIDL--THNPEFTTCEFYMAYA-D----YNDLMHLTEDLISGRKEDRNRPCVMANARM 343 (553)
Q Consensus 282 Vfei~~~FR~E~~~~--~H~~EFt~lE~e~a~~-~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~ 343 (553)
.|+||++||.|.... .|.-||+|+++|.... + ..+++.++-++++.+ +++...+..|.+.
T Consensus 160 ~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~l--gl~~~~i~in~~~ 226 (517)
T 4g85_A 160 RYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSL--QIGDFLVKVNDRR 226 (517)
T ss_dssp EEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHHH--CCCCEEEEEEEHH
T ss_pred eEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHhh--cCCcccccccchh
Confidence 999999999997753 5889999999998764 2 357888888888887 6777777777643
No 53
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=98.35 E-value=1.3e-06 Score=92.94 Aligned_cols=128 Identities=16% Similarity=0.169 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceeccc-----c-CCCC----CcceeeccCCCCcceeeeeCHHHHHHHHHHcc--
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMI-----A-GGAT----AKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG-- 278 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-----~-gga~----a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g-- 278 (553)
.+++..|.+.+|+.|...||.||.||++.+. . |... .+.|.. .+.-|..+.||.-.....-++++..
T Consensus 18 ~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~-~D~~g~~l~Lrpd~t~~~aR~~~~~~~ 96 (423)
T 1htt_A 18 TAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTF-EDRNGDSLTLRPEGTAGCVRAGIEHGL 96 (423)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEE-ECTTSCEEEECSCSHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEE-EcCCCCEEEeCCCchHHHHHHHHhccc
Confidence 4678899999999999999999999999643 1 3211 244543 2456788999977766666665522
Q ss_pred ----CCcEEEEccccccCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccC-CCccccccc
Q psy11418 279 ----LDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDR-NRPCVMANA 341 (553)
Q Consensus 279 ----~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~-~~iqv~~n~ 341 (553)
--|.|+||++||+|.....+..||+|+++|.-..+ ..+++.++.+++..+ ++ ....+..|.
T Consensus 97 ~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~~~ad~e~i~~~~~~l~~l--gl~~~~~i~i~~ 166 (423)
T 1htt_A 97 LYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRAL--GISEHVTLELNS 166 (423)
T ss_dssp STTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHH--TCGGGCEEEEEE
T ss_pred ccCCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCCCchhhHHHHHHHHHHHHHC--CCCCCcEEEEcC
Confidence 13999999999999887779999999999998765 336777777777766 55 445666665
No 54
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=98.32 E-value=2.3e-06 Score=92.07 Aligned_cols=130 Identities=17% Similarity=0.281 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc-----cCCCCC-cceeeccCCCCcceeeeeCHHHHHHHHHHcc-C--C
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI-----AGGATA-KPFVTHHNDLNMDLYMRIAPELYLKMLVVGG-L--D 280 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~-----~gga~a-~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g-~--~ 280 (553)
-.+.+..|.+.+|+.|..+||.||.||++.+. ..|... ..| +..+.-|..+.||.-.....-|.++.. . -
T Consensus 27 ~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y-~f~D~~g~~l~LRPd~T~~~aR~~~~~~~~p~ 105 (464)
T 4g84_A 27 QMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIY-DLKDQGGELLSLRYDLTVPFARYLAMNKLTNI 105 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCC-BBCCCSSCCEEECSCSHHHHHHHHHHTTCSCE
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeE-EEECCCCCEEEeCCcCcHHHHHHHHhcCCCCc
Confidence 34688899999999999999999999999532 122222 233 233556788899965544555554432 1 3
Q ss_pred cEEEEccccccCCCCC--CccCCcceeeeEeccC-C----HHHHHHHHHHHHhcccccCCCcccccccc
Q psy11418 281 RVYEVGRQFRNEGIDL--THNPEFTTCEFYMAYA-D----YNDLMHLTEDLISGRKEDRNRPCVMANAR 342 (553)
Q Consensus 281 rVfei~~~FR~E~~~~--~H~~EFt~lE~e~a~~-~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r 342 (553)
|.|+||++||.|.... .+.-||+|+++|.-.. + -.+++.++-++++.+ +++...+..|.+
T Consensus 106 k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~l--gl~~~~i~i~~~ 172 (464)
T 4g84_A 106 KRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSL--QIGDFLVKVNDR 172 (464)
T ss_dssp EEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHHH--TCCCEEEEEEEH
T ss_pred eeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHHh--CCCCcceeecch
Confidence 8999999999997754 4788999999998764 2 357888888888877 666677766654
No 55
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=98.22 E-value=2.2e-06 Score=91.48 Aligned_cols=115 Identities=15% Similarity=0.163 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CC----CCCcceeeccCCCCcceeeeeCHHHHHHHHHHcc---
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GG----ATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG--- 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gg----a~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g--- 278 (553)
-.+++.+|.+.+++.+.+.||.||.||+|.... +| -.-..|.. -+.++||+-..+..+-.+....
T Consensus 171 ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~----~~~~l~LrPt~e~~i~~~~~~~i~s 246 (425)
T 2dq3_A 171 GARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKC----ERDNLYLIPTAEVPLTNLYREEILK 246 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBC----TTTCCEECSSTHHHHHGGGTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEe----cCCeEEEcCCCcHHHHHHHHhhccc
Confidence 456789999999999999999999999996321 11 11133322 2568999977766555443322
Q ss_pred ---C-CcEEEEccccccCCCC----C---CccCCcceeeeEeccCC------HHHHHHHHHHHHhcc
Q psy11418 279 ---L-DRVYEVGRQFRNEGID----L---THNPEFTTCEFYMAYAD------YNDLMHLTEDLISGR 328 (553)
Q Consensus 279 ---~-~rVfei~~~FR~E~~~----~---~H~~EFt~lE~e~a~~~------~~~~m~~~e~li~~~ 328 (553)
+ -|+|++|+|||+|.+. + -+..||+|.|++....+ +.+++++++++++.+
T Consensus 247 ~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~L 313 (425)
T 2dq3_A 247 EENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLL 313 (425)
T ss_dssp TTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHC
Confidence 1 3999999999999864 2 27789999999874432 245555555555554
No 56
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=98.21 E-value=2e-06 Score=96.58 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCC-cceeeeeCHHHHHHHHHHccC
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLN-MDLYMRIAPELYLKMLVVGGL 279 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~-~~~~L~~Spql~lk~l~~~g~ 279 (553)
.-.+++..|.+.+|+.+.+.||.||.||+|.+.. +|. .-..|.. .+.-+ .+++||.-.+-..-+++....
T Consensus 269 ~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~-~d~~~~~~~~LrP~~~~~~~~~~~~~~ 347 (645)
T 1nyr_A 269 NGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPP-MQLDETESMVLRPMNCPHHMMIYANKP 347 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCC-EEETTTEEEEECSSSHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCccee-EecCCCeEEEeCCCCCHHHHHHHHhhh
Confidence 3468999999999999999999999999996421 121 1233432 12235 789999877666666555442
Q ss_pred -------CcEEEEccccccCCCCCC----ccCCcceeeeEeccCC-------HHHHHHHHHHHHhcccccCCCccccccc
Q psy11418 280 -------DRVYEVGRQFRNEGIDLT----HNPEFTTCEFYMAYAD-------YNDLMHLTEDLISGRKEDRNRPCVMANA 341 (553)
Q Consensus 280 -------~rVfei~~~FR~E~~~~~----H~~EFt~lE~e~a~~~-------~~~~m~~~e~li~~~~~~~~~iqv~~n~ 341 (553)
-|+|+||+|||+|.+..+ +..||||+|+|. |.+ +.++++++.+++..+ ++....+..+.
T Consensus 348 ~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~-f~~~~~~~d~~~e~i~~~~~~l~~l--Gl~~~~~~l~~ 424 (645)
T 1nyr_A 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHI-FVRPDQIKEEFKRVVNMIIDVYKDF--GFEDYSFRLSY 424 (645)
T ss_dssp CBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHHHHHHHHT--TCCCEEEEEEE
T ss_pred hhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEE-EcCHHHHHHHHHHHHHHHHHHHHHc--CCCeEEEEEeC
Confidence 299999999999999643 679999999998 443 356677777777766 55444455444
Q ss_pred c
Q psy11418 342 R 342 (553)
Q Consensus 342 r 342 (553)
+
T Consensus 425 ~ 425 (645)
T 1nyr_A 425 R 425 (645)
T ss_dssp C
T ss_pred C
Confidence 3
No 57
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.21 E-value=2e-06 Score=93.06 Aligned_cols=48 Identities=29% Similarity=0.434 Sum_probs=44.7
Q ss_pred cEEEEccccccCCCCCCccCCcceeeeEecc--CCHHHHHHHHHHHHhcc
Q psy11418 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAY--ADYNDLMHLTEDLISGR 328 (553)
Q Consensus 281 rVfei~~~FR~E~~~~~H~~EFt~lE~e~a~--~~~~~~m~~~e~li~~~ 328 (553)
|+|+||+|||+|..|.+|+|+|+|+|...+. .++.|++.+++.++..+
T Consensus 349 riFeiGrVFR~d~~DatHlpeFhQlegl~~~~~v~f~dLKg~Le~~l~~l 398 (508)
T 3l4g_A 349 KYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKL 398 (508)
T ss_dssp EEEEEEEEECCSCCCSSSCSEEEEEEEEEEEESCCHHHHHHHHHHHHHTT
T ss_pred eEEEEccEEecCCCCCCcCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 8999999999999999999999999998874 48999999999999887
No 58
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=98.19 E-value=3.8e-06 Score=90.99 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceecccc-----CCC----CCcceeeccC---CCCcceeeeeCHHHHHHHHHHc-
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-----GGA----TAKPFVTHHN---DLNMDLYMRIAPELYLKMLVVG- 277 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~-----gga----~a~~F~t~~~---~~~~~~~L~~Spql~lk~l~~~- 277 (553)
.+++..|.+.+|+.|...||.||.||+|.+.. +|- .-+.|..... ..+.+++||.-.+-..-+++..
T Consensus 44 ~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~~ 123 (477)
T 1hc7_A 44 YAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKW 123 (477)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHHhh
Confidence 46888999999999999999999999996432 221 1233432211 1257899997665322222221
Q ss_pred -----cC-CcEEEEccccccCCCCCC--ccCCcceeeeEeccCCHHHHHHHHHH
Q psy11418 278 -----GL-DRVYEVGRQFRNEGIDLT--HNPEFTTCEFYMAYADYNDLMHLTED 323 (553)
Q Consensus 278 -----g~-~rVfei~~~FR~E~~~~~--H~~EFt~lE~e~a~~~~~~~m~~~e~ 323 (553)
.+ -|+|+||+|||+|..... +.-||+|+|++..+.+.++....+..
T Consensus 124 ~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~ 177 (477)
T 1hc7_A 124 IRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRR 177 (477)
T ss_dssp CCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHH
T ss_pred hhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHHHH
Confidence 22 299999999999966434 88999999999999876554444333
No 59
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=98.17 E-value=3.4e-06 Score=91.25 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHH-----c
Q psy11418 211 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVV-----G 277 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~-----~ 277 (553)
.+++..|.+.+|+.|...||.||.||+|.+.+ +|. .-+.|.. +.-+..++||.-.+...-++++ .
T Consensus 49 ~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~--d~~~~~l~LRP~~t~~i~~~~~~~~~s~ 126 (471)
T 3a32_A 49 GPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLF--DIEGHEFAVKPMNCPYHILLFLNEVAKH 126 (471)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEE--EETTEEEEECSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEE--ecCCcEEEEccccHHHHHHHHHhhhhhc
Confidence 46888999999999999999999999996421 221 2244543 3346789999665443333222 1
Q ss_pred ----cC-CcEEEEccccccCCCC--CC--ccCCcceeeeEeccCC------HHHHHHHHHHHHhc-ccccC----CCccc
Q psy11418 278 ----GL-DRVYEVGRQFRNEGID--LT--HNPEFTTCEFYMAYAD------YNDLMHLTEDLISG-RKEDR----NRPCV 337 (553)
Q Consensus 278 ----g~-~rVfei~~~FR~E~~~--~~--H~~EFt~lE~e~a~~~------~~~~m~~~e~li~~-~~~~~----~~iqv 337 (553)
.+ -|+|+||+|||+|... .. +.-||+|+|+|..... +.+++.++.+++.. + ++ ....+
T Consensus 127 r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~~~~~de~~e~i~~~~~~l~~~l--Gl~~~~~~~~l 204 (471)
T 3a32_A 127 RSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLF--KLGVSSETFKV 204 (471)
T ss_dssp GGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTS--CCCCSTTTEEE
T ss_pred cccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcChHHHHHHHHHHHHHHHHHHHHhh--CCCcCCCCeEE
Confidence 23 3999999999999876 44 7889999999986442 25577777777777 5 45 34555
Q ss_pred ccccc
Q psy11418 338 MANAR 342 (553)
Q Consensus 338 ~~n~r 342 (553)
..+.+
T Consensus 205 ~i~~~ 209 (471)
T 3a32_A 205 RLSMS 209 (471)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 55544
No 60
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=98.16 E-value=6.5e-06 Score=88.72 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc-----CCC----CCcceeeccCC---CCcceeeeeCHHHHHHHHHHc
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-----GGA----TAKPFVTHHND---LNMDLYMRIAPELYLKMLVVG 277 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~-----gga----~a~~F~t~~~~---~~~~~~L~~Spql~lk~l~~~ 277 (553)
-.+++..|.+.+|+.|...||.||.||+|.+.. .|- .-+.|...... .+.+++||.-.+-..-++++.
T Consensus 37 g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~ 116 (459)
T 1nj8_A 37 GFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKL 116 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHHHH
Confidence 346889999999999999999999999996421 221 12345432111 267899998777666665553
Q ss_pred cC-------CcEEEEccccccCCC-CCC--ccCCcc-eeeeEeccCCHHH-------HHHHHHHHHhcc
Q psy11418 278 GL-------DRVYEVGRQFRNEGI-DLT--HNPEFT-TCEFYMAYADYND-------LMHLTEDLISGR 328 (553)
Q Consensus 278 g~-------~rVfei~~~FR~E~~-~~~--H~~EFt-~lE~e~a~~~~~~-------~m~~~e~li~~~ 328 (553)
.+ -|+|+||+|||+|.. ... +.-||+ |+|.+..+.+.++ ++++..+++..+
T Consensus 117 ~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~~~~~~~~~L 185 (459)
T 1nj8_A 117 WVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTL 185 (459)
T ss_dssp TCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHHHHHHHHHHC
Confidence 32 299999999999998 333 888999 9999998887444 455555555444
No 61
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=98.16 E-value=4.5e-06 Score=92.32 Aligned_cols=106 Identities=15% Similarity=0.198 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC--
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL-- 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~-- 279 (553)
-.+++..|.+.+|+.|...||.||.||+|.+.+ +|. .-+.|.. .+.-+..++||.-.+-..-+++...+
T Consensus 46 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~-~d~~~~~~~LrP~~~~~~~~~~~~~~~s 124 (572)
T 2j3l_A 46 ANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRL-KDRNDRDYILGPTHEETFTELIRDEINS 124 (572)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEE-ECTTCCEEEECSCCHHHHHHHHHHHCCB
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEE-ecCCCCeEEEccccHHHHHHHHHhhccC
Confidence 467899999999999999999999999996431 221 1233432 23456889999666544433333322
Q ss_pred -----CcEEEEccccccCCCCCC---ccCCcceeeeEeccCCHHH
Q psy11418 280 -----DRVYEVGRQFRNEGIDLT---HNPEFTTCEFYMAYADYND 316 (553)
Q Consensus 280 -----~rVfei~~~FR~E~~~~~---H~~EFt~lE~e~a~~~~~~ 316 (553)
-|+|+||+|||+|..... +..||+|+|+|.-..+-.+
T Consensus 125 ~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~ 169 (572)
T 2j3l_A 125 YKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEAS 169 (572)
T ss_dssp GGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHH
T ss_pred hhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHH
Confidence 299999999999988422 7899999999998775443
No 62
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=98.15 E-value=3.7e-06 Score=94.26 Aligned_cols=127 Identities=20% Similarity=0.203 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC--
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL-- 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~-- 279 (553)
-.+++..|.+.+|+.+.+.||.||.||+|.+.. +|- .-..|. .+.-+.+++||.-.+-..=+++....
T Consensus 270 g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~--~d~~~~~~~LrP~~~~~~~~~~~~~~~s 347 (642)
T 1qf6_A 270 GWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT--TSSENREYCIKPMNCPGHVQIFNQGLKS 347 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEE--EEETTEEEEECSSSHHHHHHHHTTSCEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCcccccccccee--eecCCceEEecCCCCHHHHHHHHhhhhh
Confidence 457899999999999999999999999996432 121 123454 23346789999776665555544332
Q ss_pred -----CcEEEEccccccCCCCC----CccCCcceeeeEeccCC-------HHHHHHHHHHHHhcccccCCCccccccc
Q psy11418 280 -----DRVYEVGRQFRNEGIDL----THNPEFTTCEFYMAYAD-------YNDLMHLTEDLISGRKEDRNRPCVMANA 341 (553)
Q Consensus 280 -----~rVfei~~~FR~E~~~~----~H~~EFt~lE~e~a~~~-------~~~~m~~~e~li~~~~~~~~~iqv~~n~ 341 (553)
-|+|+||+|||+|.+.. .+.-||||.|++. |.+ +.++++++.+++..+ ++....+..+.
T Consensus 348 yr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~-f~~~~~~~~e~~~~i~~~~~i~~~l--Gl~~~~v~l~~ 422 (642)
T 1qf6_A 348 YRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDEVNGCIRLVYDMYSTF--GFEKIVVKLST 422 (642)
T ss_dssp GGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHHHHHHGGG--TCCCCEEEEEC
T ss_pred ccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEE-EcCHHHHHHHHHHHHHHHHHHHHHc--CCCceEEEEec
Confidence 29999999999999832 2789999999998 543 233566667777666 44334444443
No 63
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=98.06 E-value=8.6e-06 Score=87.77 Aligned_cols=118 Identities=13% Similarity=0.090 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHh-hhCCeEEEecceecccc----CCC----CCcceeeccC-CCCcceeeeeCHHHHHHHHHHccC
Q psy11418 210 KFIVRAQIIAYVRRYL-DSLGFLEVETPMMNMIA----GGA----TAKPFVTHHN-DLNMDLYMRIAPELYLKMLVVGGL 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl-~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~-~~~~~~~L~~Spql~lk~l~~~g~ 279 (553)
-.+++..|.+.+|+.+ .+.||.||.||+|.... +|- .-+.|..... .-+.+++||--.+...-+++....
T Consensus 63 g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~ 142 (460)
T 3uh0_A 63 GAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKD 142 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHhcc
Confidence 3578999999999999 99999999999995321 121 1234443211 135789999777666655554432
Q ss_pred -------CcEEEEccccccCCCC--CC--ccCCcceeeeEeccCCHH-------HHHHHHHHHH-hcc
Q psy11418 280 -------DRVYEVGRQFRNEGID--LT--HNPEFTTCEFYMAYADYN-------DLMHLTEDLI-SGR 328 (553)
Q Consensus 280 -------~rVfei~~~FR~E~~~--~~--H~~EFt~lE~e~a~~~~~-------~~m~~~e~li-~~~ 328 (553)
-|+|++|+|||+|... .- +..||+|.|.+. |.+-+ ++++++.+++ +.+
T Consensus 143 ~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~~e~~~~e~~~~i~~~~~~~~~~l 209 (460)
T 3uh0_A 143 RSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCTPSQVKSEIFNSLKLIDIVYNKIF 209 (460)
T ss_dssp CBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHHHHHHHHHHHHHHHHTTTS
T ss_pred ccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2899999999999986 23 889999999996 45433 2555666666 444
No 64
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=98.00 E-value=1.1e-05 Score=87.81 Aligned_cols=110 Identities=23% Similarity=0.205 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc---C--C----CCCcceeeccC---CCCcceeeeeCHHHHHHHHHHc
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA---G--G----ATAKPFVTHHN---DLNMDLYMRIAPELYLKMLVVG 277 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~---g--g----a~a~~F~t~~~---~~~~~~~L~~Spql~lk~l~~~ 277 (553)
-.+++..|.+.+++.|.+ ||.||.||+|.+.. + | -.-+.|..... ..+.+++||--.+..+-+++..
T Consensus 70 g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~ 148 (501)
T 1nj1_A 70 GFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFAL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHHh
Confidence 346788899999999999 99999999996421 1 1 01234443211 0256899997776665555443
Q ss_pred c------C-CcEEEEccccccCCCCC-C--ccCCcc-eeeeEeccCCHHHHHHH
Q psy11418 278 G------L-DRVYEVGRQFRNEGIDL-T--HNPEFT-TCEFYMAYADYNDLMHL 320 (553)
Q Consensus 278 g------~-~rVfei~~~FR~E~~~~-~--H~~EFt-~lE~e~a~~~~~~~m~~ 320 (553)
. + -|+|++|+|||+|..++ . +.-||+ |+|.+..+.+.++....
T Consensus 149 ~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e 202 (501)
T 1nj1_A 149 WVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQ 202 (501)
T ss_dssp HCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHH
T ss_pred hhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHH
Confidence 2 2 29999999999999844 3 788999 99999988875544333
No 65
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=97.98 E-value=1.3e-05 Score=87.33 Aligned_cols=115 Identities=14% Similarity=0.063 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc---cC-CCCC-----cceeecc-C--CCCcceeeeeCHHHHHHHHHHc
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI---AG-GATA-----KPFVTHH-N--DLNMDLYMRIAPELYLKMLVVG 277 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~---~g-ga~a-----~~F~t~~-~--~~~~~~~L~~Spql~lk~l~~~ 277 (553)
-.+++..|.+.+++.+.+.||.||.||+|.+. .. .+.. +.|.+.. . ..+.+++||.-.+-.+-.+...
T Consensus 60 G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~ 139 (519)
T 4hvc_A 60 AYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAK 139 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHHh
Confidence 35688999999999999999999999999532 11 1111 2332211 0 0124689986655544443333
Q ss_pred c------C-CcEEEEccccccCCCCC---CccCCcceeeeEeccCCHHHHHHHHHHH
Q psy11418 278 G------L-DRVYEVGRQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHLTEDL 324 (553)
Q Consensus 278 g------~-~rVfei~~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~e~l 324 (553)
. + -|+|++|+|||+|...+ -+.-||+|.|.+..|.+.++..+.++.+
T Consensus 140 ~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~ 196 (519)
T 4hvc_A 140 WVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQI 196 (519)
T ss_dssp HCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred hccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHH
Confidence 2 2 28999999999995554 2788999999999999866666555543
No 66
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=97.98 E-value=6.1e-06 Score=89.92 Aligned_cols=128 Identities=14% Similarity=0.097 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc-----CCC----CCcceeeccC---CCCcceeeeeCHHHHHHHHHHc
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-----GGA----TAKPFVTHHN---DLNMDLYMRIAPELYLKMLVVG 277 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~-----gga----~a~~F~t~~~---~~~~~~~L~~Spql~lk~l~~~ 277 (553)
-.+++..|.+.+|+.+.+.||.||.||+|.+.. +|- .-+.|..... ..+.+++||...+-.+-.++..
T Consensus 54 G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~ 133 (518)
T 3ial_A 54 GFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSK 133 (518)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHHh
Confidence 457889999999999999999999999996421 110 1234543211 1256899997766554444433
Q ss_pred cC------C-cEEEEccccccCCCCC-C--ccCCcceeeeEeccCCHHHHHHHHHHHH---hccc-ccCCCccc
Q psy11418 278 GL------D-RVYEVGRQFRNEGIDL-T--HNPEFTTCEFYMAYADYNDLMHLTEDLI---SGRK-EDRNRPCV 337 (553)
Q Consensus 278 g~------~-rVfei~~~FR~E~~~~-~--H~~EFt~lE~e~a~~~~~~~m~~~e~li---~~~~-~~~~~iqv 337 (553)
.+ . |+|++|+|||+|...+ - +.-||+|.|.+....+.++..+.++.++ ..++ +.++....
T Consensus 134 ~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~~i~~~~LGlp~~ 207 (518)
T 3ial_A 134 WVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDELCFKGQ 207 (518)
T ss_dssp HCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHTTTTCCCCE
T ss_pred hhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 22 2 8999999999994433 3 8889999999998788777766666654 4455 55555543
No 67
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=97.98 E-value=1.8e-05 Score=84.98 Aligned_cols=113 Identities=21% Similarity=0.209 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc---cCCCCCcceeecc-CCCCcceeeeeCHHHHHHHHHHcc------C
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI---AGGATAKPFVTHH-NDLNMDLYMRIAPELYLKMLVVGG------L 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~---~gga~a~~F~t~~-~~~~~~~~L~~Spql~lk~l~~~g------~ 279 (553)
-.+++.+|.+.+++.+.+.||.||.||+|... .+.+...-|.-.. ..-+.++||+-..+..+-.+.... +
T Consensus 192 ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d~~l~LrPt~e~~~~~~~~~~~~s~~~L 271 (455)
T 2dq0_A 192 IVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVEDEDLYLIPTAEHPLAGMHANEILDGKDL 271 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBTTSSCEECSSTHHHHHHTTTTEEEETTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeecCCcEEEcCcCcHHHHHHHHhCccCchhC
Confidence 45678999999999999999999999999642 1211111221100 011468999988777666554432 1
Q ss_pred -CcEEEEccccccCCCC----C---CccCCcceeeeEeccCCHHHHHHHHHH
Q psy11418 280 -DRVYEVGRQFRNEGID----L---THNPEFTTCEFYMAYADYNDLMHLTED 323 (553)
Q Consensus 280 -~rVfei~~~FR~E~~~----~---~H~~EFt~lE~e~a~~~~~~~m~~~e~ 323 (553)
-|+|++|+|||+|... + -+.-||+|.|++. |.+-++..+..++
T Consensus 272 Plr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~-f~~pe~s~~~~~e 322 (455)
T 2dq0_A 272 PLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFV-YSRPEESWEWHEK 322 (455)
T ss_dssp SEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEE-EECTTTHHHHHHH
T ss_pred CEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEE-ecCHHHHHHHHHH
Confidence 2899999999999863 2 2778999999994 5533444333333
No 68
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=97.95 E-value=1.5e-05 Score=84.90 Aligned_cols=112 Identities=20% Similarity=0.294 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHcc---
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG--- 278 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g--- 278 (553)
-.+++.+|.+.+++.+.+.||.||.||+|.... +|- .-+.|.. -+.++||+...+-.+-.++...
T Consensus 165 ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~----~d~~l~L~Pt~e~~~~~~~~~~~~s 240 (421)
T 1ses_A 165 LALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI----AETDLYLTGTAEVVLNALHSGEILP 240 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBB----TTSSEEECSSTHHHHHHTTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEE----cCCeEEEeecCcHHHHHHhcccccC
Confidence 346889999999999999999999999995321 121 1123322 1467999988777766654432
Q ss_pred ---C-CcEEEEccccccCCC----CC---CccCCcceeeeEeccCC-HHHHHHHHHHHH
Q psy11418 279 ---L-DRVYEVGRQFRNEGI----DL---THNPEFTTCEFYMAYAD-YNDLMHLTEDLI 325 (553)
Q Consensus 279 ---~-~rVfei~~~FR~E~~----~~---~H~~EFt~lE~e~a~~~-~~~~m~~~e~li 325 (553)
+ -|+|++|+|||+|.+ ++ -+.-||+|.|++..-.+ .++..+..++++
T Consensus 241 ~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~ 299 (421)
T 1ses_A 241 YEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELL 299 (421)
T ss_dssp GGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHH
T ss_pred chhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHH
Confidence 1 299999999999963 22 27789999999986554 344444333333
No 69
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=97.91 E-value=5e-05 Score=82.38 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc-----CCC---CC-cceeeccCCCCcceeeeeCHHHHHHHHHHccC-
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA-----GGA---TA-KPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL- 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~-----gga---~a-~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~- 279 (553)
-.+++.+|++.+++.+.+.||.||.||.|.... |.- .. +.|.+.. .-+.++||+-..|..+-.+.....
T Consensus 218 GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~-~~~~~l~L~PTaE~~~~~l~~~~i~ 296 (501)
T 1wle_A 218 GALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDP-SRFEDLNLAGTAEVGLAGYFMDHSV 296 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCT-TTSSSCEECSSHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEec-CCCCeEEECCcCcHHHHHHHhhccC
Confidence 457888899999999999999999999996421 111 11 4555421 124689999888877765544322
Q ss_pred ------CcEEEEccccccCCC---CC---CccCCcceeeeEeccCCH-HHHHHHHHHHHh
Q psy11418 280 ------DRVYEVGRQFRNEGI---DL---THNPEFTTCEFYMAYADY-NDLMHLTEDLIS 326 (553)
Q Consensus 280 ------~rVfei~~~FR~E~~---~~---~H~~EFt~lE~e~a~~~~-~~~m~~~e~li~ 326 (553)
-|+|++++|||+|.. ++ -+.-||+|.|.+..-.+. ++..+..++++.
T Consensus 297 s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~ 356 (501)
T 1wle_A 297 AFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLS 356 (501)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHH
T ss_pred CcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHH
Confidence 299999999999976 33 367799999999866653 555555555543
No 70
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=97.90 E-value=2.2e-05 Score=79.22 Aligned_cols=118 Identities=13% Similarity=0.280 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHhh-----hCCeEEEecceeccccCCC------CCcceeeccCCC-CcceeeeeCHHHHHHHHHHc-
Q psy11418 211 FIVRAQIIAYVRRYLD-----SLGFLEVETPMMNMIAGGA------TAKPFVTHHNDL-NMDLYMRIAPELYLKMLVVG- 277 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~-----~~gF~EV~TPil~~~~gga------~a~~F~t~~~~~-~~~~~L~~Spql~lk~l~~~- 277 (553)
++-....+..+++||. +.|+++|.+|+++....|- ..+|-....... +..+-+..|.-.|++..+..
T Consensus 5 ~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKWKR~aL~~y 84 (330)
T 12as_A 5 YIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQH 84 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHHHHHHHHhC
Confidence 4566778899999998 8999999999997543321 135554433333 77888999999999987654
Q ss_pred cC---CcEEEEccccccCC--CCCCccCCcceeeeEeccCCHHHHHHHHHHHHhcc
Q psy11418 278 GL---DRVYEVGRQFRNEG--IDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 278 g~---~rVfei~~~FR~E~--~~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~ 328 (553)
|| +.+|+-.++.|.+. .|.+|.-+|+|.|||......+..|+++++.++.+
T Consensus 85 ~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~tV~~I 140 (330)
T 12as_A 85 DFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAI 140 (330)
T ss_dssp TCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHHH
T ss_pred CCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHHHHHH
Confidence 47 89999999999755 35689999999999999997777777777775544
No 71
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=97.89 E-value=1.7e-05 Score=79.81 Aligned_cols=116 Identities=11% Similarity=-0.030 Sum_probs=81.4
Q ss_pred HHHHH--HHhhhCCeEEEecceeccccCCCCCcceeeccCCCCcceeeeeCH--HHHHHHHHHc-c-C-CcEEEEccccc
Q psy11418 218 IAYVR--RYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAP--ELYLKMLVVG-G-L-DRVYEVGRQFR 290 (553)
Q Consensus 218 ~~~ir--~fl~~~gF~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~Sp--ql~lk~l~~~-g-~-~rVfei~~~FR 290 (553)
.+.+| +.|..+||.||.||++...+--.. +.|. +.-|..+.||.-. .+....+ .. . + -|.|++|+|||
T Consensus 7 e~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f~---d~~g~~l~LRpd~T~~~a~~~~-~~~~~~p~R~~y~g~vfR 81 (275)
T 1usy_A 7 EKVFSFYSKATKKGFSPFFVPALEKAEEPAG-NFFL---DRKGNLFSIREDFTKTVLNHRK-RYSPDSQIKVWYADFVYR 81 (275)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEECSSCCS-SCEE---ETTSCEEEECCCHHHHHHHHHT-TCTTCCCEEEECCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEecCccccchhhhcc-cccC---CCCCCEEEeCCcChHHHHHHHh-hcCCCCceEEEEeceEEe
Confidence 44555 999999999999999964321111 2443 3457788899432 2222221 11 1 2 49999999999
Q ss_pred cCCCCCCccCCcceeeeEeccCC----HHHHHHHHHHHHhcccccCCCccccccccc
Q psy11418 291 NEGIDLTHNPEFTTCEFYMAYAD----YNDLMHLTEDLISGRKEDRNRPCVMANARM 343 (553)
Q Consensus 291 ~E~~~~~H~~EFt~lE~e~a~~~----~~~~m~~~e~li~~~~~~~~~iqv~~n~r~ 343 (553)
.|.+.. .||||+++|.-..+ -.+++.++-++++.+ ++...++..|.+.
T Consensus 82 ~e~~~~---Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~l--gl~~~~i~l~~~~ 133 (275)
T 1usy_A 82 YSGSDL---VAEYQLGLEKVPRNSLDDSLEVLEIIVESASEF--FEGPVIVEIGHTG 133 (275)
T ss_dssp EETTEE---EEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHH--CCSCEEEEEEETT
T ss_pred cCCCCC---CeeeEeCEEEecCCCchhHHHHHHHHHHHHHHc--CCCCeEEEeCCHH
Confidence 998877 89999999997663 367888888888887 6666777777654
No 72
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=97.78 E-value=1.8e-05 Score=85.78 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc---C-C----CCCcceeeccC-------CCCcceeeeeCHHHHHHHH
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA---G-G----ATAKPFVTHHN-------DLNMDLYMRIAPELYLKML 274 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~---g-g----a~a~~F~t~~~-------~~~~~~~L~~Spql~lk~l 274 (553)
-.+++.++++.+++.+.++||.||.||.|.+.. + | =..+.|.+... ..+.++||+-..|..+-.+
T Consensus 200 GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l 279 (522)
T 3vbb_A 200 LVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAAL 279 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHHH
Confidence 458899999999999999999999999995321 1 1 01234544211 1246799998777766443
Q ss_pred HHccC-------CcEEEEccccccCCC----CC---CccCCcceeeeEe
Q psy11418 275 VVGGL-------DRVYEVGRQFRNEGI----DL---THNPEFTTCEFYM 309 (553)
Q Consensus 275 ~~~g~-------~rVfei~~~FR~E~~----~~---~H~~EFt~lE~e~ 309 (553)
..... -|+|++++|||+|.+ ++ -+.-||+|.|.+.
T Consensus 280 ~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~ 328 (522)
T 3vbb_A 280 HRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFV 328 (522)
T ss_dssp STTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEE
T ss_pred HhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEE
Confidence 32211 189999999999985 23 3677999999986
No 73
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=97.71 E-value=8.6e-05 Score=79.95 Aligned_cols=115 Identities=15% Similarity=0.209 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC-
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL- 279 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~- 279 (553)
.-.+++.++++.+++.+.+.||.||.||.|.... .|- ..+.|.+.. -+.++||.-..|..+-.++..-.
T Consensus 183 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~--~~~~~~LipTaE~pl~~l~~~ei~ 260 (485)
T 3qne_A 183 YGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVID--GEDEKYLIATSEQPISAYHAGEWF 260 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEE--TTEEEEECSSTHHHHHHHTTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeC--CCCeEEEeccccHHHHHHHhcccc
Confidence 3558899999999999999999999999996421 110 123454421 15679998877877766644321
Q ss_pred C--------cEEEEccccccCCCC----C---CccCCcceeeeEeccCCHHHHHHHHHHHHh
Q psy11418 280 D--------RVYEVGRQFRNEGID----L---THNPEFTTCEFYMAYADYNDLMHLTEDLIS 326 (553)
Q Consensus 280 ~--------rVfei~~~FR~E~~~----~---~H~~EFt~lE~e~a~~~~~~~m~~~e~li~ 326 (553)
. |+|++++|||+|... + -+.-||+|.|.+. |..-++..+..++++.
T Consensus 261 ~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~pe~s~~e~e~ml~ 321 (485)
T 3qne_A 261 ESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTEPEKSWEEFDRMIG 321 (485)
T ss_dssp SSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EECGGGHHHHHHHHHH
T ss_pred ccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeCHHHHHHHHHHHHH
Confidence 1 699999999999753 3 2677999999997 5554555555555443
No 74
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=97.69 E-value=4.3e-05 Score=82.31 Aligned_cols=114 Identities=14% Similarity=0.163 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC-
Q psy11418 209 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL- 279 (553)
Q Consensus 209 ~~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~- 279 (553)
.-.+++.++++.+++.+.++||.||.||.|.... .|- ..+.|.+.. -+.++||.-..+..+-.+.....
T Consensus 206 ~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~--~~~~~~L~PTaE~~l~~l~~~~i~ 283 (484)
T 3lss_A 206 GLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSG--DGDKKYLIATSEMPIAAYHRGRWF 283 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEES--SSSCEEECSSTHHHHHHHTTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeec--CCcceEEeccCcHHHHHHHhcccc
Confidence 3568899999999999999999999999996421 111 013454432 15789999888887754432211
Q ss_pred ------CcEEEEccccccCCC----CC---CccCCcceeeeEeccCCHHH--HHHHHHHHH
Q psy11418 280 ------DRVYEVGRQFRNEGI----DL---THNPEFTTCEFYMAYADYND--LMHLTEDLI 325 (553)
Q Consensus 280 ------~rVfei~~~FR~E~~----~~---~H~~EFt~lE~e~a~~~~~~--~m~~~e~li 325 (553)
-|+|++++|||+|.. ++ -+.-||+|.|.+. |..-++ ..+..++++
T Consensus 284 sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~-f~~pe~~~s~~e~e~~~ 343 (484)
T 3lss_A 284 TELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV-VCSPRQEESWRHLEDMI 343 (484)
T ss_dssp SCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE-EECSSTTHHHHHHHHHH
T ss_pred chhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE-EeCcchHHHHHHHHHHH
Confidence 189999999999963 33 2667999999985 433222 444444443
No 75
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=97.68 E-value=0.00013 Score=79.92 Aligned_cols=114 Identities=18% Similarity=0.289 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceecccc----CCC----CCcceeeccCCCCcceeeeeCHHHHHHHHHHccC--
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL-- 279 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g~-- 279 (553)
-.+++.++++.+++.+.++||.||.||.|.+.. .|- ..+.|.+. +.++||+-..+..+-.+.....
T Consensus 274 Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~----~~~~~L~PT~E~~~~~l~~~~i~s 349 (536)
T 3err_A 274 LALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA----ETDLYLTGTAEVVLNALHSGEILP 349 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET----TTTEEECSSTHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec----CCCEEEccCCcHHHHHHHhccccc
Confidence 468899999999999999999999999996321 110 12445442 3679999877776554433221
Q ss_pred -----CcEEEEccccccCCC----CC---CccCCcceeeeEeccCC-HHHHHHHHHHHHhc
Q psy11418 280 -----DRVYEVGRQFRNEGI----DL---THNPEFTTCEFYMAYAD-YNDLMHLTEDLISG 327 (553)
Q Consensus 280 -----~rVfei~~~FR~E~~----~~---~H~~EFt~lE~e~a~~~-~~~~m~~~e~li~~ 327 (553)
-|+|++|+|||+|.. ++ -+.-||+|.|.+.--.+ .++..+..++++..
T Consensus 350 ~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~ 410 (536)
T 3err_A 350 YEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLEN 410 (536)
T ss_dssp GGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred HhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHH
Confidence 289999999999974 33 37789999999963332 23566555555543
No 76
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=97.61 E-value=9e-05 Score=80.73 Aligned_cols=30 Identities=3% Similarity=-0.037 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhh--hCCeEEEecceecc
Q psy11418 211 FIVRAQIIAYVRRYLD--SLGFLEVETPMMNM 240 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~--~~gF~EV~TPil~~ 240 (553)
.+++..|.+.+|+.+. +.||.||.||+|.+
T Consensus 39 ~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~ 70 (505)
T 1ati_A 39 VELKNNLKQAWWRRNVYERDDMEGLDASVLTH 70 (505)
T ss_dssp HHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCcEEEEccccCC
Confidence 4688899999999999 99999999999954
No 77
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=97.57 E-value=3.7e-05 Score=83.70 Aligned_cols=115 Identities=19% Similarity=0.209 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHH-HhhhCCeEEEecceecccc----CCC----CCcceeecc-C--C---------------------
Q psy11418 210 KFIVRAQIIAYVRR-YLDSLGFLEVETPMMNMIA----GGA----TAKPFVTHH-N--D--------------------- 256 (553)
Q Consensus 210 ~~~~rs~i~~~ir~-fl~~~gF~EV~TPil~~~~----gga----~a~~F~t~~-~--~--------------------- 256 (553)
-.+++.+|.+.+++ ++.+.||.||.||+|.+.. +|- .-..|.+.. . .
T Consensus 230 G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~~ 309 (522)
T 2cja_A 230 SARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKL 309 (522)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhccccccccc
Confidence 34688899999996 6899999999999995321 111 113343311 1 1
Q ss_pred -----CCcceeeeeCHHHHHHHHHHcc------CC-cEEE-EccccccCCCCC---CccCCcceeeeEeccCCHHHHHHH
Q psy11418 257 -----LNMDLYMRIAPELYLKMLVVGG------LD-RVYE-VGRQFRNEGIDL---THNPEFTTCEFYMAYADYNDLMHL 320 (553)
Q Consensus 257 -----~~~~~~L~~Spql~lk~l~~~g------~~-rVfe-i~~~FR~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~ 320 (553)
-+.++|||...+..+=.++... +. |+|+ +|+|||+|...+ -+.-||+|.|++. |.+.++..+.
T Consensus 310 ~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~-F~~pe~s~ee 388 (522)
T 2cja_A 310 IKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVW-IGTKEEVLKC 388 (522)
T ss_dssp HHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEE-EEEHHHHHHH
T ss_pred cccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEE-EeChHHHHHH
Confidence 2567899966544333222211 22 8999 999999994322 4888999999998 7777777666
Q ss_pred HHHHH
Q psy11418 321 TEDLI 325 (553)
Q Consensus 321 ~e~li 325 (553)
.++++
T Consensus 389 ~ee~i 393 (522)
T 2cja_A 389 AEELH 393 (522)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66666
No 78
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=97.37 E-value=0.00054 Score=74.49 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=44.5
Q ss_pred cEEEEccccccCCC-CCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 281 RVYEVGRQFRNEGI-DLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 281 rVfei~~~FR~E~~-~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
|+||||+|||.|.. +.+|.+||+|++..+.+. |+.|+..++|.++..+
T Consensus 207 rLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~L 257 (534)
T 2du3_A 207 KLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQF 257 (534)
T ss_dssp EEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGG
T ss_pred eEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 89999999999877 788999999999999885 7999999999999887
No 79
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=97.29 E-value=0.0011 Score=72.06 Aligned_cols=48 Identities=19% Similarity=0.303 Sum_probs=44.2
Q ss_pred cEEEEccccccCCC-CCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 281 RVYEVGRQFRNEGI-DLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 281 rVfei~~~FR~E~~-~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
|+||+|+|||.+.. +.+|.+||+|++.-+++. |+.|+...+|.++..+
T Consensus 219 rlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~L 269 (549)
T 2du7_A 219 KLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQF 269 (549)
T ss_dssp EEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGG
T ss_pred EEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 89999999998876 778999999999999886 7999999999999887
No 80
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=97.24 E-value=0.0006 Score=72.37 Aligned_cols=93 Identities=20% Similarity=0.186 Sum_probs=60.4
Q ss_pred HHHHHHHHhhhC--------CeEEEec-ceeccc---------cCCCCCcceeeccCCCCcceeeeeCHHHHHHHHHHcc
Q psy11418 217 IIAYVRRYLDSL--------GFLEVET-PMMNMI---------AGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGG 278 (553)
Q Consensus 217 i~~~ir~fl~~~--------gF~EV~T-Pil~~~---------~gga~a~~F~t~~~~~~~~~~L~~Spql~lk~l~~~g 278 (553)
+.+.||++|... ||.|+.+ |.+.+. +..--|+. .+..-|++...-||.+.--++-+++..+
T Consensus 53 ~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~-~~Dtfyi~~~~vLRThts~~~~~~l~~~ 131 (415)
T 3cmq_A 53 IKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRK-KGDNYYLNRTHMLRAHTSAHQWDLLHAG 131 (415)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGC-GGGSCBSSSSEEECSSGGGGHHHHHHTT
T ss_pred HHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCccc-ccceEEecCCeEEcCCCcHHHHHHHHHC
Confidence 345566666555 8999998 666321 11000111 0111144566778866444444445667
Q ss_pred CCcEEEEccccccCCCCCCccCCcceeeeEec
Q psy11418 279 LDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMA 310 (553)
Q Consensus 279 ~~rVfei~~~FR~E~~~~~H~~EFt~lE~e~a 310 (553)
..|+|++|.|||.+..|+.|.|+|.|+|--..
T Consensus 132 ~~k~~~~G~VyR~D~~da~h~n~fhQ~egv~l 163 (415)
T 3cmq_A 132 LDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRL 163 (415)
T ss_dssp CSEEEEEEEEECCCCCBTTBCSEEEEEEEEEE
T ss_pred CCCEEEeeeEEeccchhhhhhHHhcCCCcEEE
Confidence 78999999999999999999999999995443
No 81
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.22 E-value=0.00035 Score=76.69 Aligned_cols=68 Identities=24% Similarity=0.294 Sum_probs=52.5
Q ss_pred eeeeeC--HHHHHHHHHH--ccC--CcEEEEccccccCCC-CCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 261 LYMRIA--PELYLKMLVV--GGL--DRVYEVGRQFRNEGI-DLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 261 ~~L~~S--pql~lk~l~~--~g~--~rVfei~~~FR~E~~-~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
..||.| |.|..+.-.. .+. -|+||+|+|||++.. +.+|.+||+|++.-++.. |+.|+...+|.++..+
T Consensus 200 sVLRTsLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (648)
T 2odr_B 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (648)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred CcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 457754 5444443211 122 289999999998876 888999999999999885 8999999999999887
No 82
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.20 E-value=0.00037 Score=76.65 Aligned_cols=68 Identities=24% Similarity=0.294 Sum_probs=52.5
Q ss_pred eeeeeC--HHHHHHHHHH--ccC--CcEEEEccccccCCC-CCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 261 LYMRIA--PELYLKMLVV--GGL--DRVYEVGRQFRNEGI-DLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 261 ~~L~~S--pql~lk~l~~--~g~--~rVfei~~~FR~E~~-~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
..||.| |.|..+.-.. .+. -|+||+|+|||++.. +.+|.+||+|++.-++.. |+.|+...+|.++..+
T Consensus 200 sVLRTSLlPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (665)
T 2odr_A 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (665)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred CcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 457754 5444443211 122 289999999998876 888999999999999885 8999999999999887
No 83
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.19 E-value=0.00039 Score=76.57 Aligned_cols=68 Identities=24% Similarity=0.294 Sum_probs=52.5
Q ss_pred eeeeeC--HHHHHHHHHH--ccC--CcEEEEccccccCCC-CCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 261 LYMRIA--PELYLKMLVV--GGL--DRVYEVGRQFRNEGI-DLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 261 ~~L~~S--pql~lk~l~~--~g~--~rVfei~~~FR~E~~-~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
..||.| |.|..+.-.. .+. -|+||+|+|||++.. +.+|.+||+|++.-++.. |+.|+...+|.++..+
T Consensus 200 sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (685)
T 2odr_D 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (685)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred CcccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 457754 5444443211 122 289999999998876 788999999999999885 8999999999999887
No 84
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=97.17 E-value=0.00042 Score=76.46 Aligned_cols=48 Identities=27% Similarity=0.384 Sum_probs=44.4
Q ss_pred cEEEEccccccCCC-CCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 281 RVYEVGRQFRNEGI-DLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 281 rVfei~~~FR~E~~-~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
|+||+|+|||++.. +.+|.+||+|++.-++.. |+.|+...+|.++..+
T Consensus 226 RLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (701)
T 2odr_C 226 KLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (701)
T ss_dssp EEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred EEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 89999999998876 888999999999999885 8999999999999887
No 85
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.03 E-value=0.0037 Score=54.01 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=62.2
Q ss_pred CCcEEEEEEEEEee-------ecCC--CceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc-
Q psy11418 89 ENVTLSVAGRVHAI-------RESG--TKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT- 158 (553)
Q Consensus 89 ~~~~V~v~Gri~~~-------R~~g--~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t- 158 (553)
.|+.|.+.|+|.++ ++.| +++..+.|.|++|.|.+.+-.+.. . ....+..|++|.|+|.+.+.
T Consensus 15 ~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~---~----~~~~l~~G~vv~i~g~~v~~~ 87 (115)
T 2k50_A 15 EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENI---K----LLKKFREGDVIRIKDVNIRGG 87 (115)
T ss_dssp TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGG---G----GGGTCCTTSEEEEEEEEECCC
T ss_pred CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchh---h----hhhcCCCCCEEEEEeeEEccc
Confidence 46678999999998 2344 478999999999999999886532 1 23568999999999998654
Q ss_pred cCCceeEeeeeEEEeccC
Q psy11418 159 KKGELSIIPKKLTLLSPC 176 (553)
Q Consensus 159 ~~ge~~l~~~~i~il~~~ 176 (553)
-.|.++|.+.....+.++
T Consensus 88 f~g~~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 88 FGGRKEAHLMPRSTVEVL 105 (115)
T ss_dssp SSSSCEEEECTTCCEEEE
T ss_pred cCCeEEEEECCCceEEEC
Confidence 467888888776555544
No 86
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=96.96 E-value=0.00079 Score=75.90 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhh-hCCeEEEecceecc
Q psy11418 211 FIVRAQIIAYVRRYLD-SLGFLEVETPMMNM 240 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~-~~gF~EV~TPil~~ 240 (553)
.+++..|.+.+|+.|. ..||.||.||+|.+
T Consensus 101 ~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~ 131 (693)
T 2zt5_A 101 CALKNNIIQTWRQHFIQEEQILEIDCTMLTP 131 (693)
T ss_dssp HHHHHHHHHHHHHHTHHHHTCEECCCCSEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCcEEEEeCCccc
Confidence 4788999999999998 56999999999963
No 87
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=96.81 E-value=0.0015 Score=67.09 Aligned_cols=117 Identities=15% Similarity=0.068 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHhhhCCeEEEecceeccc---cCCCC-----CcceeeccCC-----------------------CC
Q psy11418 210 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI---AGGAT-----AKPFVTHHND-----------------------LN 258 (553)
Q Consensus 210 ~~~~rs~i~~~ir~fl~~~gF~EV~TPil~~~---~gga~-----a~~F~t~~~~-----------------------~~ 258 (553)
--+++..+.+.+++ ..++||.||.||.|... .+.+- -..|.+..-. -+
T Consensus 63 ~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l~~ 141 (346)
T 3mf2_A 63 YESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSP 141 (346)
T ss_dssp HHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEEE
T ss_pred HHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhccccccccccCC
Confidence 44678889999999 88999999999999532 11110 1234432100 13
Q ss_pred cceeeeeCHHHHHHHHHHc-c-C----CcEEEEccccccCCC-CCCccCCcceeeeEeccCCHHHHHHHHHHHHhcc
Q psy11418 259 MDLYMRIAPELYLKMLVVG-G-L----DRVYEVGRQFRNEGI-DLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGR 328 (553)
Q Consensus 259 ~~~~L~~Spql~lk~l~~~-g-~----~rVfei~~~FR~E~~-~~~H~~EFt~lE~e~a~~~~~~~m~~~e~li~~~ 328 (553)
.++||.-..+..+=.+... | + -|+-++|+|||.|.+ +--++-+|+|.|+-. |.+-++..+..|+++..+
T Consensus 142 ~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~tpEqs~~e~e~l~~~a 217 (346)
T 3mf2_A 142 ADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IGTPDDVSDFRERWMVRA 217 (346)
T ss_dssp EEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EESHHHHHHHHHHHHHHH
T ss_pred CCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeCHHHHHHHHHHHHHHH
Confidence 4689987766665555442 2 2 366779999999996 235888999999887 567777666666666544
No 88
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=96.63 E-value=0.00097 Score=71.59 Aligned_cols=114 Identities=12% Similarity=0.056 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHh--hhCCeEEEecceecccc---CCCC-----Cccee---------------eccCCCCcceeeee
Q psy11418 211 FIVRAQIIAYVRRYL--DSLGFLEVETPMMNMIA---GGAT-----AKPFV---------------THHNDLNMDLYMRI 265 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl--~~~gF~EV~TPil~~~~---gga~-----a~~F~---------------t~~~~~~~~~~L~~ 265 (553)
..++..|.+.+++.+ .+.|+.||.||+|.+.. +... ++-+. +-...++.++|||.
T Consensus 62 ~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LRP 141 (454)
T 1g5h_A 62 VELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLRA 141 (454)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEECS
T ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeecc
Confidence 478899999888774 58899999999996432 1100 11111 00012345789995
Q ss_pred --CHH---HHHHHHHHc--cCC-cEEEEccccc---cCCCCC---CccCCcceeeeEeccCCHHHHHHHHHHHH
Q psy11418 266 --APE---LYLKMLVVG--GLD-RVYEVGRQFR---NEGIDL---THNPEFTTCEFYMAYADYNDLMHLTEDLI 325 (553)
Q Consensus 266 --Spq---l~lk~l~~~--g~~-rVfei~~~FR---~E~~~~---~H~~EFt~lE~e~a~~~~~~~m~~~e~li 325 (553)
+|. .|...+-.. .+. ++++||+||| ||-+.. .+.-||+|.|++. |.+.++..+..+.++
T Consensus 142 eta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~-F~~pe~~~e~~~~~~ 214 (454)
T 1g5h_A 142 TLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTPTRTSSQWLDFWL 214 (454)
T ss_dssp CSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEE-EECHHHHHHHHHHHH
T ss_pred cccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEE-EeCHhhHHHHHHHHH
Confidence 322 223332222 233 9999999999 696532 3678999999996 666665554444433
No 89
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=96.46 E-value=0.029 Score=51.55 Aligned_cols=79 Identities=13% Similarity=0.138 Sum_probs=62.6
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCE-EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeee
Q psy11418 91 VTLSVAGRVHAIRESGTKLMFYDLRGEGL-KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKK 169 (553)
Q Consensus 91 ~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~ 169 (553)
..|+|.|.|.+++... +-..+.|-|++| .|.|++..+.. .+. ......+..|++|.|.|.+. +-.|+.+|.+..
T Consensus 48 ~~V~IvGiVv~~~~~~-~~~~ytIDD~TG~~I~cv~w~~~~--~~~-~~~~~~l~~G~~VrV~G~v~-~fr~~rqI~~~~ 122 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYE-GKHVLTVDDCSGMVLRVVFIIQDD--FSM-SKRAISMSPGNVVCVFGKIN-SFRSEVELIAQS 122 (159)
T ss_dssp CEEEEEEEEEEEEEET-TEEEEEEECSSSCEEEEEEEGGGC--HHH-HHHHTTCCTTCEEEEEEEEE-CSSSSCEEEEEE
T ss_pred EEEEEEEEEEEEEEeC-CEEEEEEecCCCCeEEEEEEccCC--CCc-ccccccCCCCCEEEEEEEEE-eeCCEEEEEEEE
Confidence 4699999999999887 667899999998 69999987641 111 11234589999999999985 457788999999
Q ss_pred EEEec
Q psy11418 170 LTLLS 174 (553)
Q Consensus 170 i~il~ 174 (553)
+.++.
T Consensus 123 i~~v~ 127 (159)
T 3kf6_A 123 FEELR 127 (159)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 98886
No 90
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=96.42 E-value=0.0054 Score=65.65 Aligned_cols=103 Identities=10% Similarity=-0.088 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhh-hCC-eEEEecceeccccCCCCCcceeeccCCCCcceeeee-CHHHHHHHH---HHc---cCC-
Q psy11418 211 FIVRAQIIAYVRRYLD-SLG-FLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRI-APELYLKML---VVG---GLD- 280 (553)
Q Consensus 211 ~~~rs~i~~~ir~fl~-~~g-F~EV~TPil~~~~gga~a~~F~t~~~~~~~~~~L~~-Spql~lk~l---~~~---g~~- 280 (553)
..+|+.|++..|+.+. ++| +.||.||+...-.-.+ |.+.|. +|||. .-|-++..+ +-. .+.
T Consensus 104 ~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SG-------H~d~~~--~~LRPeTaqg~~~nfk~~~~s~r~~LP~ 174 (459)
T 3ikl_A 104 VELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLP-------GDSAFR--GGLRENLLHGALEHYVNCLDLVNKRLPY 174 (459)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCS-------SCSCCT--TB-CSCSHHHHHHHTTTTTGGGTTBSSE
T ss_pred HHHHHHHHHHHHHHHhhccCceEeeccccccccccCc-------chhhhc--ceECCCCChhHHHHHhhhhhhccccCCe
Confidence 3688889986666654 365 8889999954211111 122232 88985 333333221 111 111
Q ss_pred cEEEEccccccCC--CCC----CccCCcceeeeEeccCCHHHHHHHHHH
Q psy11418 281 RVYEVGRQFRNEG--IDL----THNPEFTTCEFYMAYADYNDLMHLTED 323 (553)
Q Consensus 281 rVfei~~~FR~E~--~~~----~H~~EFt~lE~e~a~~~~~~~m~~~e~ 323 (553)
++.+||+|||+|. +.. -+.-||||.|.+. |.+-++..+..+.
T Consensus 175 ~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~-F~~Pe~~~e~~~~ 222 (459)
T 3ikl_A 175 GLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVW-FTPPRTSNQWLDF 222 (459)
T ss_dssp EEEEEEEEECCC----------CCCCEEEEEEEEE-EECGGGHHHHHHH
T ss_pred EEEEEeeeeecccccccCCCCcccccceeeeeEEE-EeChhHHHHHHHH
Confidence 7999999999995 343 3568999999985 5554443333333
No 91
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=96.27 E-value=0.024 Score=50.49 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=58.0
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeE
Q psy11418 91 VTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKL 170 (553)
Q Consensus 91 ~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i 170 (553)
..|++.|+|.+++... .-.-+.|.|++|.|.+....+.. +.. ......+..|+.|.|.|.+. +-.|...|.+..+
T Consensus 37 ~~V~iVG~V~~~~~~~-~~~~~~ldD~TG~I~~~~W~~~~--~~~-~~~~~~~~~g~yVrV~G~v~-~f~g~~qi~~~~i 111 (136)
T 4gop_B 37 GQLTFVAVVRNISRNA-TNVAYSVEDGTGQIEVRQWLDSS--SDD-SSKASEIRNNVYVRVLGTLK-SFQNRRSISSGHM 111 (136)
T ss_dssp CEEEEEEEEEEEEECS-SEEEEEEECSSCEEEEEEECC-----------CCSCCTTCEEEEEEEEE-EETTEEEEEESEE
T ss_pred EEEEEEEEEEEEEecC-CeEEEEEECCCCCEEEEEecccC--Ccc-cccccccCCCCEEEEEEEEE-EeCCEEEEEEEEE
Confidence 4699999999999887 55557899999999998876531 100 01356799999999999974 4567778888877
Q ss_pred EEec
Q psy11418 171 TLLS 174 (553)
Q Consensus 171 ~il~ 174 (553)
..+.
T Consensus 112 r~v~ 115 (136)
T 4gop_B 112 RPVI 115 (136)
T ss_dssp EECS
T ss_pred EECC
Confidence 6653
No 92
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.11 E-value=0.051 Score=46.32 Aligned_cols=79 Identities=24% Similarity=0.303 Sum_probs=62.8
Q ss_pred CcEEEEEEEEEeee-------cCCC--ceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC
Q psy11418 90 NVTLSVAGRVHAIR-------ESGT--KLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK 160 (553)
Q Consensus 90 ~~~V~v~Gri~~~R-------~~g~--kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ 160 (553)
+..|.|.|+|.++- ..|+ ++.=+.|.|++|.|.+++-.+.. .. .+.+||+|.+.|.+.....
T Consensus 14 ~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a--------~~-~l~~Gdvv~i~g~vk~~~~ 84 (105)
T 3dm3_A 14 GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLT--------DI-DVGRGDYVRVRGYIREGYY 84 (105)
T ss_dssp SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGG--------GS-CCCTTCEEEEEEEEEECTT
T ss_pred CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECccc--------cc-ccCCCCEEEEEEEEEEccC
Confidence 35799999998764 2331 45568899999999999876542 11 6999999999998887778
Q ss_pred CceeEeeeeEEEeccCC
Q psy11418 161 GELSIIPKKLTLLSPCL 177 (553)
Q Consensus 161 ge~~l~~~~i~il~~~~ 177 (553)
|+++|.+.....+.+|.
T Consensus 85 g~~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 85 GGLECTANYVEILKKGE 101 (105)
T ss_dssp SSEEEEEEEEEEEECCC
T ss_pred CCEEEEeCCceEEEecc
Confidence 89999999999998885
No 93
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=96.02 E-value=0.036 Score=49.06 Aligned_cols=78 Identities=12% Similarity=0.167 Sum_probs=57.3
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCE-EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeee
Q psy11418 91 VTLSVAGRVHAIRESGTKLMFYDLRGEGL-KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKK 169 (553)
Q Consensus 91 ~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~ 169 (553)
..|++.|+|.++.... .-.-+.|.|++| .|.+....+.. ... .....+..|+.|.|.|.+.. -.|...|.+..
T Consensus 32 ~~V~iVG~V~~~~~~~-~~~~~~ldD~TG~~I~~~~W~~~~--~~~--~~~~~~~~g~yVrV~G~l~~-f~g~~qi~~~~ 105 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKAP-TNIVYKIDDMTAAPMDVRQWVDTD--DTS--SENTVVPPETYVKVAGHLRS-FQNKKSLVAFK 105 (132)
T ss_dssp CEEEEEEEEEEEEECS-SEEEEEEECSSSSCEEEEEEC-------------CCCCTTCEEEEEEEEEE-ETTEEEEEEEE
T ss_pred EEEEEEEEEEEEEEcC-CeEEEEEECCCCCEEEEEEEccCC--Ccc--cccccccCCCEEEEEEEEEe-ECCEEEEEEEE
Confidence 3699999999999887 555588999999 99999887532 111 12467999999999999764 45778888887
Q ss_pred EEEec
Q psy11418 170 LTLLS 174 (553)
Q Consensus 170 i~il~ 174 (553)
+..+.
T Consensus 106 ir~v~ 110 (132)
T 3kdf_D 106 IMPLE 110 (132)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 77653
No 94
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=95.98 E-value=0.062 Score=45.02 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=57.2
Q ss_pred CcEEEEEEEEEeee-------cCCC--ceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC
Q psy11418 90 NVTLSVAGRVHAIR-------ESGT--KLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK 160 (553)
Q Consensus 90 ~~~V~v~Gri~~~R-------~~g~--kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ 160 (553)
+..|+|.|+|.++- ..|+ ++.=+.|.|++|.|.+.+..+.. .. .+..||+|.|.|.+. ...
T Consensus 11 g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~~--------~~-~i~~Gdvv~i~g~v~-~~~ 80 (97)
T 3e0e_A 11 NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNELA--------DF-EVKKGDIAEVSGYVK-QGY 80 (97)
T ss_dssp TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGGG--------GC-CCCTTCEEEEEEEEE-EC-
T ss_pred CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCcc--------cc-ccCCCCEEEEEEEEE-EcC
Confidence 35789999998863 1331 46668889999999999876532 01 699999999999774 446
Q ss_pred CceeEeeeeEEEeccCC
Q psy11418 161 GELSIIPKKLTLLSPCL 177 (553)
Q Consensus 161 ge~~l~~~~i~il~~~~ 177 (553)
|.++|.+.+...+.+|+
T Consensus 81 ~~~el~~g~~~~i~k~~ 97 (97)
T 3e0e_A 81 SGLEISVDNIGIIEKSL 97 (97)
T ss_dssp -CEEEEEEEEEEEECCC
T ss_pred CeEEEEECCCcEEEECC
Confidence 68999999988887774
No 95
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=95.92 E-value=0.019 Score=65.71 Aligned_cols=112 Identities=13% Similarity=0.045 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhhhCCeEEEecceeccccCC----CCCc-ceeeccCCCCc-ceeeeeCHHHHHHHHHHc----cCC--cE
Q psy11418 215 AQIIAYVRRYLDSLGFLEVETPMMNMIAGG----ATAK-PFVTHHNDLNM-DLYMRIAPELYLKMLVVG----GLD--RV 282 (553)
Q Consensus 215 s~i~~~ir~fl~~~gF~EV~TPil~~~~gg----a~a~-~F~t~~~~~~~-~~~L~~Spql~lk~l~~~----g~~--rV 282 (553)
..+.+.+|+.|...||.|+.|..+.+..-- ...+ ++... |-... .-.||.|.=--+=..+.. +.. |+
T Consensus 496 ~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L~-NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~vrl 574 (795)
T 2rhq_B 496 QHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISLL-MPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRL 574 (795)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEECS-SCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEEc-CCCchhhhhhhhccHHHHHHHHHHHhcCCCCCeEE
Confidence 345678999999999999999988643211 1122 23321 22222 246887642222222222 232 99
Q ss_pred EEEccccccCCCCCCccCCcceeeeEecc-------------CCHHHHHHHHHHHHhcc
Q psy11418 283 YEVGRQFRNEGIDLTHNPEFTTCEFYMAY-------------ADYNDLMHLTEDLISGR 328 (553)
Q Consensus 283 fei~~~FR~E~~~~~H~~EFt~lE~e~a~-------------~~~~~~m~~~e~li~~~ 328 (553)
||+|+|||.+..+..| +||+++..-++. .|+.|+...+|.++..+
T Consensus 575 FEiG~Vf~~d~~~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~l 632 (795)
T 2rhq_B 575 YEIGRVFFGNGEGELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKL 632 (795)
T ss_dssp EEEEEEEECCCTTSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHH
T ss_pred EEEeeEEecCCcccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 9999999975544367 999999877665 58999999999999877
No 96
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=95.88 E-value=0.025 Score=62.53 Aligned_cols=112 Identities=11% Similarity=0.081 Sum_probs=75.6
Q ss_pred HHHHHHHHHhhhCCeEEEecceeccccC-----C---CCCcceeeccCCCCcc-eeeeeCHHHHHHHHHHccC-----Cc
Q psy11418 216 QIIAYVRRYLDSLGFLEVETPMMNMIAG-----G---ATAKPFVTHHNDLNMD-LYMRIAPELYLKMLVVGGL-----DR 281 (553)
Q Consensus 216 ~i~~~ir~fl~~~gF~EV~TPil~~~~g-----g---a~a~~F~t~~~~~~~~-~~L~~Spql~lk~l~~~g~-----~r 281 (553)
++.+.+|+.|...||.||.|+.+.+..- + ....++.. .|-...+ -.||.|.=--|=..+.... =|
T Consensus 395 ~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L-~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~vr 473 (589)
T 3l4g_B 395 KLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHI-SNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLK 473 (589)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBB-SSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCEE
T ss_pred HHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEE-cCCCchhHhHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 4567899999999999999999964210 0 00122322 1222223 4688774222222222222 28
Q ss_pred EEEEccccccCCCCCCccCCcceeeeEeccC--CHHHHHHHHHHHHhcc
Q psy11418 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAYA--DYNDLMHLTEDLISGR 328 (553)
Q Consensus 282 Vfei~~~FR~E~~~~~H~~EFt~lE~e~a~~--~~~~~m~~~e~li~~~ 328 (553)
+||+|+|||.+..+.+|.+|+.++..-+... ++.++...++.++..+
T Consensus 474 lFEiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~l 522 (589)
T 3l4g_B 474 LFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLL 522 (589)
T ss_dssp EEEEEEEEEECTTSTTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHT
T ss_pred EEEeeeEEecCCccccCCccccEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 9999999998877678899999999877654 6999999999988776
No 97
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=95.49 E-value=0.032 Score=53.55 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=69.8
Q ss_pred HHHHHHHHHhhhCCeEEEecceeccccCC------CCCcceeeccCCCCc-ceeeeeCHHHHHHHHHHc----cCC--cE
Q psy11418 216 QIIAYVRRYLDSLGFLEVETPMMNMIAGG------ATAKPFVTHHNDLNM-DLYMRIAPELYLKMLVVG----GLD--RV 282 (553)
Q Consensus 216 ~i~~~ir~fl~~~gF~EV~TPil~~~~gg------a~a~~F~t~~~~~~~-~~~L~~Spql~lk~l~~~----g~~--rV 282 (553)
++.+.+|+.|...||.||-|-.+++..-- ....+... .|-... --.||.|.=--|=..+.. +.. |+
T Consensus 8 ~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~v~l-~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v~l 86 (213)
T 3ig2_A 8 KLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVML-LNPLSADLNCMRQTLLFGGLESIAHNANRKNADLKF 86 (213)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGCEEB-SSGGGCSCCEECSCSHHHHHHHHHHC------CCEE
T ss_pred HHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCeEEE-eCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCeeE
Confidence 56688999999999999999999643210 00112221 122222 346887743322222232 232 89
Q ss_pred EEEccccccCCCCC------CccCCcceeeeEecc-------------CCHHHHHHHHHHHHhcc
Q psy11418 283 YEVGRQFRNEGIDL------THNPEFTTCEFYMAY-------------ADYNDLMHLTEDLISGR 328 (553)
Q Consensus 283 fei~~~FR~E~~~~------~H~~EFt~lE~e~a~-------------~~~~~~m~~~e~li~~~ 328 (553)
||||+||+.++.+. .+..|..++-+-+++ .|+.|+...+|.++..+
T Consensus 87 FEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~l 151 (213)
T 3ig2_A 87 FEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRL 151 (213)
T ss_dssp EEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHT
T ss_pred EEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 99999999876432 234577888776655 37999999999999877
No 98
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=95.45 E-value=0.046 Score=52.43 Aligned_cols=113 Identities=15% Similarity=0.089 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhhhCCeEEEecceeccccCC------CCCcceeeccCCCCcc-eeeeeCHHHH-HHHH---HHccCC--c
Q psy11418 215 AQIIAYVRRYLDSLGFLEVETPMMNMIAGG------ATAKPFVTHHNDLNMD-LYMRIAPELY-LKML---VVGGLD--R 281 (553)
Q Consensus 215 s~i~~~ir~fl~~~gF~EV~TPil~~~~gg------a~a~~F~t~~~~~~~~-~~L~~Spql~-lk~l---~~~g~~--r 281 (553)
.++.+.+|+.|...||.||-|-.+++..-- ....+.. -.|-...+ -.||.|.=-- |+.+ ...+.. |
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v~-l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~~ 85 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVE-LMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSLY 85 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCB-CSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEEE
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCeEE-ecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCee
Confidence 356788999999999999999999643210 0011111 12333333 4588874222 2222 123444 8
Q ss_pred EEEEccccccCCCCC------CccCCcceeeeEecc-------------CCHHHHHHHHHHHHhcc
Q psy11418 282 VYEVGRQFRNEGIDL------THNPEFTTCEFYMAY-------------ADYNDLMHLTEDLISGR 328 (553)
Q Consensus 282 Vfei~~~FR~E~~~~------~H~~EFt~lE~e~a~-------------~~~~~~m~~~e~li~~~ 328 (553)
+||||+||+.++.+. .+..|..++-.-+++ .|+.|+...+|.++..+
T Consensus 86 lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~l 151 (213)
T 3ica_A 86 LFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRV 151 (213)
T ss_dssp EEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHT
T ss_pred EEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 999999999765321 345677888776655 48999999999999887
No 99
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=95.17 E-value=0.1 Score=44.85 Aligned_cols=74 Identities=15% Similarity=0.255 Sum_probs=56.0
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeee
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPK 168 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~ 168 (553)
.+..|++.|.|.+.-..- + +.++|++|.|+|-++.+... -..+++++-|.|.|.+-+.- +..+|.|.
T Consensus 36 Dd~~V~L~G~Iv~~~~~d-~---Y~F~D~TG~I~VeId~~~w~--------g~~v~p~~~Vri~GevDkd~-~~~eIdV~ 102 (109)
T 1nnx_A 36 DDTWVTLRGNIVERISDD-L---YVFKDASGTINVDIDHKRWN--------GVTVTPKDTVEIQGEVDKDW-NSVEIDVK 102 (109)
T ss_dssp SSEEEEEEEEEEEEEETT-E---EEEEETTEEEEEECCGGGST--------TCCCCTTSCEEEEEEEEEET-TEEEEEEE
T ss_pred CCCeEEEEEEEEEEeCCC-e---EEEECCCccEEEEEChhhcC--------CcccCCCCEEEEEEEECCCC-CceEEEEE
Confidence 567899999998765443 4 55699999999998765431 24689999999999998643 35688999
Q ss_pred eEEEecc
Q psy11418 169 KLTLLSP 175 (553)
Q Consensus 169 ~i~il~~ 175 (553)
.|+++.+
T Consensus 103 ~i~~~~~ 109 (109)
T 1nnx_A 103 QIRKVNP 109 (109)
T ss_dssp EEEEC--
T ss_pred EEEEccC
Confidence 9988753
No 100
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=94.73 E-value=0.21 Score=52.27 Aligned_cols=77 Identities=19% Similarity=0.312 Sum_probs=63.1
Q ss_pred CcEEEEEEEEEee-e-cCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEee
Q psy11418 90 NVTLSVAGRVHAI-R-ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIP 167 (553)
Q Consensus 90 ~~~V~v~Gri~~~-R-~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~ 167 (553)
...+.|.|.|.+. + ..| .=+|+.|.|+++.|.|++-... ..|......|..||.|.|.|.+.. | +|.+
T Consensus 284 ~~~~~v~G~V~~~P~~~~G-GHV~f~l~d~~~~i~c~ayept----k~fr~~vr~L~~GD~V~v~G~v~~---g--tLnv 353 (402)
T 3au7_A 284 YRSYRLRGRVTLEPYDIEG-GHVFFEIDTKFGSVKCAAFEPT----KQFRNVIRLLRKGDVVEVYGSMKK---D--TINL 353 (402)
T ss_dssp TCEEEEEEEEEEEEEEETT-TEEEEEEEETTEEEEEEECGGG----TTHHHHHTTCCTTCEEEEEEEEET---T--EEEE
T ss_pred CceEEEEEEEecCcEeccC-ceEEEEEEcCCCEEEEEEEccc----hHHHHHHhcCCCCCEEEEEEeecC---C--EEEE
Confidence 3579999999988 4 445 6689999999999999997642 357788899999999999999764 4 8999
Q ss_pred eeEEEeccC
Q psy11418 168 KKLTLLSPC 176 (553)
Q Consensus 168 ~~i~il~~~ 176 (553)
+++.+++-+
T Consensus 354 Ek~~v~~l~ 362 (402)
T 3au7_A 354 EKIQIVELA 362 (402)
T ss_dssp EEEEEEECC
T ss_pred EEEEEcccC
Confidence 999998653
No 101
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=93.22 E-value=0.39 Score=47.69 Aligned_cols=78 Identities=12% Similarity=0.171 Sum_probs=57.1
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCE-EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeee
Q psy11418 91 VTLSVAGRVHAIRESGTKLMFYDLRGEGL-KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKK 169 (553)
Q Consensus 91 ~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~ 169 (553)
..|++.|+|.++...+ .-.-+.|.|++| .|.+.+..+.. +. ......+..|++|.|.|.+.. -.|...|.+..
T Consensus 72 ~~V~ivG~V~~i~~~~-~~~~~~L~D~TG~~I~~k~W~~~~--~~--~~~~~~~~~G~yVrV~G~v~~-f~g~~qi~i~~ 145 (270)
T 2pi2_A 72 SQVTIVGIIRHAEKAP-TNIVYKIDDMTAAPMDVRQWVDTD--DT--SSENTVVPPETYVKVAGHLRS-FQNKKSLVAFK 145 (270)
T ss_dssp SEEEEEEEEEEEEECS-SEEEEEEECSSSSCEEEEEECC-----------CCCCCTTCEEEEEEEEEE-ETTEEEEEEEE
T ss_pred EEEEEEEEEEEEEecc-ceEEEEEECCCCCEEEEEEEcCcC--cc--cchhhcCCCCCEEEEEEEEEe-cCCeeEEEEEE
Confidence 3699999999998777 555678999999 89999886531 11 012457999999999999874 35667788877
Q ss_pred EEEec
Q psy11418 170 LTLLS 174 (553)
Q Consensus 170 i~il~ 174 (553)
|..+.
T Consensus 146 ir~v~ 150 (270)
T 2pi2_A 146 IMPLE 150 (270)
T ss_dssp EEECS
T ss_pred EEecC
Confidence 76654
No 102
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=91.99 E-value=0.2 Score=59.52 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=48.8
Q ss_pred CCcEEEEEEEEEeeec----CCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCcee
Q psy11418 89 ENVTLSVAGRVHAIRE----SGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELS 164 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~----~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~ 164 (553)
.|+.|+|+|.|.+++. .|+.++|+.|.|.+|.+.+++..+.+ ......|..+.+|.|+|++.+.. .+.
T Consensus 1041 ~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~~evvvf~~~~------~~~~~~l~~~~~~~v~G~v~~~~--~~~ 1112 (1220)
T 2hpi_A 1041 GKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAY------EGVSPKLKEDIPLLVLAEVEKGE--ELR 1112 (1220)
T ss_dssp SSCEEEEEEEECCC------------CEEEEETTEEEEEC-------------------CTTCEEEEEEEEC-------C
T ss_pred CCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCCEEEEEcHHHH------HHHHHHhccCCEEEEEEEEEECC--CcE
Confidence 5678999999999884 34459999999999999999987643 34456689999999999998654 578
Q ss_pred EeeeeEEEeccC
Q psy11418 165 IIPKKLTLLSPC 176 (553)
Q Consensus 165 l~~~~i~il~~~ 176 (553)
|.+.++.-++..
T Consensus 1113 l~~~~i~~l~~~ 1124 (1220)
T 2hpi_A 1113 VLAQAVWTLEEV 1124 (1220)
T ss_dssp EEEEEEEEHHHH
T ss_pred EEEeeeecHHHH
Confidence 899998877654
No 103
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=91.48 E-value=0.55 Score=53.53 Aligned_cols=106 Identities=24% Similarity=0.114 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhhhCCeEEEecceecccc----CCCCCcceeeccCCCCc-ceeeeeCHHHHHHHHHH----cc-CC--c
Q psy11418 214 RAQIIAYVRRYLDSLGFLEVETPMMNMIA----GGATAKPFVTHHNDLNM-DLYMRIAPELYLKMLVV----GG-LD--R 281 (553)
Q Consensus 214 rs~i~~~ir~fl~~~gF~EV~TPil~~~~----gga~a~~F~t~~~~~~~-~~~L~~Spql~lk~l~~----~g-~~--r 281 (553)
..++.+.+|+.|...||.|+-|-.+.+.. -+...+++... |-... .-.||.|.=--|=..+. .+ .. |
T Consensus 491 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L~-NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~vr 569 (785)
T 1b7y_B 491 PYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLL-NPLAPEKAALRTHLFPGLVRVLKENLDLDRPERAL 569 (785)
T ss_dssp HHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEES-SCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCEE
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEEc-CCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCeE
Confidence 44567889999999999999988886431 00012233332 22222 23588764222222222 13 33 9
Q ss_pred EEEEccccccCCCCCCccCCcceeeeEecc------------CCHHHHHHHHHHHHhcc
Q psy11418 282 VYEVGRQFRNEGIDLTHNPEFTTCEFYMAY------------ADYNDLMHLTEDLISGR 328 (553)
Q Consensus 282 Vfei~~~FR~E~~~~~H~~EFt~lE~e~a~------------~~~~~~m~~~e~li~~~ 328 (553)
+||+|+||| + +||+++..-++. .|+.|+...+|.++..+
T Consensus 570 lFEiG~Vf~-~-------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 570 LFEVGRVFR-E-------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp EEEEEEEES-S-------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred EEEEeeeec-c-------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 999999999 2 889999887765 48999999999999877
No 104
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=91.29 E-value=0.36 Score=41.46 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=56.2
Q ss_pred EEEEEEEEEee------e---cCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc----
Q psy11418 92 TLSVAGRVHAI------R---ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---- 158 (553)
Q Consensus 92 ~V~v~Gri~~~------R---~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t---- 158 (553)
..+|.|||.++ + ..| ++.=++|.|.+|.|++.+..+.. +. +...|..|+++.|.|--.+.
T Consensus 16 ~w~I~~rV~~k~~~r~~~~~~~~g-~~~~~~L~De~G~I~at~~~~~~---~~---f~~~l~eG~vy~Is~~~V~~a~~~ 88 (114)
T 1ynx_A 16 VWTIKARVSYKGEIKTWHNQRGDG-KLFNVNFLDTSGEIRATAFNDFA---TK---FNEILQEGKVYYVSKAKLQPAKPQ 88 (114)
T ss_dssp CCEEEEEEEEEEEEEEEECSSCEE-EEEEEEEEETTEEEEEEECHHHH---HH---HHHHSCSSSEEEEESCEEEECCTT
T ss_pred ceEEEEEEEEeccceEEecCCCCc-eEEEEEEECCCCeEEEEECHHHH---HH---HHhhcccCcEEEECCcEEEECCCC
Confidence 37888888854 1 235 78889999999999999976532 22 34569999999999743322
Q ss_pred ---cCCceeEeeeeEEEeccCC
Q psy11418 159 ---KKGELSIIPKKLTLLSPCL 177 (553)
Q Consensus 159 ---~~ge~~l~~~~i~il~~~~ 177 (553)
-.+.++|....-+.+.+|.
T Consensus 89 y~~~~~~yei~f~~~T~I~~~~ 110 (114)
T 1ynx_A 89 FTNLTHPYELNLDRDTVIEECF 110 (114)
T ss_dssp TSSSSSCEEEEECSSCEEEESC
T ss_pred cccCCCCEEEEECCCCEEEECC
Confidence 1457788777777777664
No 105
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=90.85 E-value=1.2 Score=37.85 Aligned_cols=78 Identities=10% Similarity=-0.023 Sum_probs=57.2
Q ss_pred CcEEEEEEEEEeeec--CCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEee
Q psy11418 90 NVTLSVAGRVHAIRE--SGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIP 167 (553)
Q Consensus 90 ~~~V~v~Gri~~~R~--~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~ 167 (553)
+..|.+.|+|.++-. .|+....+.|.|.+|.|-+++..+.. ...+..||+|.|.|-..+.-.|.++|.+
T Consensus 15 ~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~I~~t~W~~~~---------~~~~~~G~~V~i~n~~v~~~~G~~~L~v 85 (109)
T 2kbn_A 15 GQWANLKAKVIQLWENTHESISQVGLLGDETGIIKFTIWKNAE---------LPLLEQGESYLLRSVVVGEYNDRFQVQV 85 (109)
T ss_dssp TCEEEEEEEEEEEEECCCSSEEEEEEEECTTCCEEEEEEGGGC---------CCCCCTTCEEEEEEEEEEEETTEEEEEE
T ss_pred CCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCeEEEEEECccc---------ccccCCCCEEEEEEEEEEEECCEEEEEE
Confidence 456999999998753 33345568899999999999987421 3468999999999544444568899988
Q ss_pred eeEEEeccC
Q psy11418 168 KKLTLLSPC 176 (553)
Q Consensus 168 ~~i~il~~~ 176 (553)
..+..+.+.
T Consensus 86 ~~~~~I~~~ 94 (109)
T 2kbn_A 86 NKNSSIEKL 94 (109)
T ss_dssp CSSSEEEEC
T ss_pred CCceEEEEC
Confidence 877655543
No 106
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=90.70 E-value=1.5 Score=37.10 Aligned_cols=76 Identities=16% Similarity=0.278 Sum_probs=54.6
Q ss_pred EEEEEEEEEee-----ecCCC--ceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE-eecccccCCce
Q psy11418 92 TLSVAGRVHAI-----RESGT--KLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT-GSPGKTKKGEL 163 (553)
Q Consensus 92 ~V~v~Gri~~~-----R~~g~--kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~-G~~~~t~~ge~ 163 (553)
.|++.|+|.++ ++.|+ .+.=+.|.|.+|.|.+.+-.+. +..||+|.|. |.+ ..-.|.+
T Consensus 15 ~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~I~~tlW~~~-------------l~~Gdvv~i~ng~v-~~~~g~~ 80 (106)
T 2k75_A 15 YVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGKQ-------------LQDSDVVRIDNARV-AQFNGYL 80 (106)
T ss_dssp EEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESSC-------------CCTTEEEEEEEEEE-EEETTEE
T ss_pred eEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCeEEEEEEcCc-------------cCCCCEEEEEeeEE-eEECCEE
Confidence 46777777664 23452 2666788899999998887641 8999999999 554 3457889
Q ss_pred eEeeeeEEEeccCCCCCC
Q psy11418 164 SIIPKKLTLLSPCLHMLP 181 (553)
Q Consensus 164 ~l~~~~i~il~~~~~~lP 181 (553)
+|.+..+..+.+.....|
T Consensus 81 ~L~v~~~~~I~~~~~~~~ 98 (106)
T 2k75_A 81 SLSVGDSSRIESVNVNIP 98 (106)
T ss_dssp EEEECTTSEEEECCSCCC
T ss_pred EEEECCcEEEEECCCCCc
Confidence 999987766666655444
No 107
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=89.39 E-value=2.4 Score=36.36 Aligned_cols=74 Identities=16% Similarity=0.210 Sum_probs=54.1
Q ss_pred EEEEEEEEEee---e----cCCC-ceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE-eecccccCCc
Q psy11418 92 TLSVAGRVHAI---R----ESGT-KLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT-GSPGKTKKGE 162 (553)
Q Consensus 92 ~V~v~Gri~~~---R----~~g~-kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~-G~~~~t~~ge 162 (553)
.|.+.|+|.++ | +.|+ +..=+.|.|.+|.|.+.+..+.. ..+..||+|.|+ |.+. .-.|.
T Consensus 14 ~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~I~~tlW~~~~----------~~~~~G~vv~i~~g~v~-~~~g~ 82 (119)
T 1o7i_A 14 SVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHA----------GSIKEGQVVKIENAWTT-AFKGQ 82 (119)
T ss_dssp SEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGGT----------TCCCTTCEEEEEEEEEE-EETTE
T ss_pred cEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCEEEEEEECChh----------hcCCCCCEEEEEeEEEE-EeCCE
Confidence 48888888877 4 3453 56678888999999999886532 247999999999 6654 34677
Q ss_pred eeEeeeeEEEeccC
Q psy11418 163 LSIIPKKLTLLSPC 176 (553)
Q Consensus 163 ~~l~~~~i~il~~~ 176 (553)
++|.+.....+.++
T Consensus 83 ~qL~i~~~~~i~~~ 96 (119)
T 1o7i_A 83 VQLNAGSKTKIAEA 96 (119)
T ss_dssp EEEEECTTCEEEEC
T ss_pred EEEEECCCEEEEEc
Confidence 88888775444443
No 108
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=89.22 E-value=2 Score=41.18 Aligned_cols=80 Identities=19% Similarity=0.147 Sum_probs=55.9
Q ss_pred cEEEEEEEEEeeecCC-------CceEEEEEEeCCE---EEEEEEecccCCCHHHHHHH---hccCCCCcEEEEEeeccc
Q psy11418 91 VTLSVAGRVHAIRESG-------TKLMFYDLRGEGL---KIQVMANARMYQSEEEFASD---LVKIKRGDIIGVTGSPGK 157 (553)
Q Consensus 91 ~~V~v~Gri~~~R~~g-------~kl~Fi~l~d~~~---~iQvv~~~~~~~~~~~~~~~---~~~l~~gd~V~v~G~~~~ 157 (553)
..|.|.|.|..++-.- ....|+.|-|++| .|.|.++... |... +.....|.+|.|+|.+..
T Consensus 86 ~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~------~~~~gl~l~~~~~G~iV~VkG~i~~ 159 (220)
T 3kf8_A 86 NQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQ------FKEVGLTLDKKNYGKIVELEGEIYN 159 (220)
T ss_dssp CEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHH------HHTTTCCTTSCCTTCEEEEEEEEEE
T ss_pred EEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHH------hhccCccccccCCCeEEEEEEEEEe
Confidence 4699999999997543 1358899999987 4777665432 2111 112458999999999864
Q ss_pred cc-------CCceeEeeeeEEEeccC
Q psy11418 158 TK-------KGELSIIPKKLTLLSPC 176 (553)
Q Consensus 158 t~-------~ge~~l~~~~i~il~~~ 176 (553)
-. .-+-+|.++.+.+++..
T Consensus 160 ~r~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 160 WYDSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp CCCSTTTTSCCCEEEEEEEEEEEESS
T ss_pred eccccccccccceEEEEEEEEEeccC
Confidence 21 11569999999999754
No 109
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=89.09 E-value=0.95 Score=43.79 Aligned_cols=79 Identities=20% Similarity=0.221 Sum_probs=56.4
Q ss_pred EEEEEEEEEee---e------cCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc----
Q psy11418 92 TLSVAGRVHAI---R------ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---- 158 (553)
Q Consensus 92 ~V~v~Gri~~~---R------~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t---- 158 (553)
.++|.|||.++ | ..| ++.-++|.|.+|.|++.+..+.. + .+...|..|+++.+.+--.+.
T Consensus 20 ~w~I~~rV~~k~~~r~~~~~~~~g-~~~~~~L~De~G~I~at~~~~~~---~---~~~~~l~~G~vy~i~~~~v~~~~~~ 92 (246)
T 1jmc_A 20 KWTICARVTNKSQIRTWSNSRGEG-KLFSLELVDESGEIRATAFNEQV---D---KFFPLIEVNKVYYFSKGTLKIANKQ 92 (246)
T ss_dssp CCEEEEEEEEECCCEEEECSSCEE-EEEEEEEECSSCEEEEEEEHHHH---H---HHGGGCCTTCEEEEECCEEEECCGG
T ss_pred ceEEEEEEEEecccceeeCCCCCc-eEEEEEEECCCCeEEEEEChHHH---H---HhhhhcccCCEEEECCCEEEEcccC
Confidence 47899999875 3 234 67778899999999999986532 2 345679999999999743322
Q ss_pred ---cCCceeEeeeeEEEeccCC
Q psy11418 159 ---KKGELSIIPKKLTLLSPCL 177 (553)
Q Consensus 159 ---~~ge~~l~~~~i~il~~~~ 177 (553)
-.+.++|....-+.+.+|.
T Consensus 93 y~~~~~~~ei~~~~~T~I~~~~ 114 (246)
T 1jmc_A 93 FTAVKNDYEMTFNNETSVMPCE 114 (246)
T ss_dssp GCCCCCSEEEECCTTCEEEECC
T ss_pred cccCCCCEEEEEcCCcEEEEcc
Confidence 2577888887666566654
No 110
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=86.20 E-value=3.8 Score=35.54 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=48.7
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEe-CCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEee
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRG-EGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIP 167 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d-~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~ 167 (553)
.|++|++-|+|.+++..| +. +.|.+ +++.++|.++.... ..++.+|.|.|++.. ..+|.+
T Consensus 21 vgk~VrivGkV~~~~~~g-~~--~~l~s~Dg~~Vtv~l~~p~~------------~~l~~~vEViG~V~~----~~tI~~ 81 (121)
T 3kdf_A 21 IDKPVCFVGRLEKIHPTG-KM--FILSDGEGKNGTIELMEPLD------------EEISGIVEVVGRVTA----KATILC 81 (121)
T ss_dssp TTCEEEEEEEEEEECTTS-SE--EEEECTTSCEEEEECSSCCS------------SCCCSEEEEEEEECT----TSCEEE
T ss_pred CCCeEEEEEEEEEEcCCC-CE--EEEEeCCCCEEEEEeCCCCC------------cccCcEEEEEEEECC----CCeEEE
Confidence 678999999999999888 43 23343 44678887765321 122559999999983 357888
Q ss_pred eeEEEeccC
Q psy11418 168 KKLTLLSPC 176 (553)
Q Consensus 168 ~~i~il~~~ 176 (553)
..+.-++..
T Consensus 82 ~~~~~fg~~ 90 (121)
T 3kdf_A 82 TSYVQFKED 90 (121)
T ss_dssp EEEEECCCS
T ss_pred EEEEecCCC
Confidence 888777644
No 111
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=83.18 E-value=5.6 Score=36.02 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=50.4
Q ss_pred EEEEEEEEEe---eecC--CCceEEEEEE------eC--------CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 92 TLSVAGRVHA---IRES--GTKLMFYDLR------GE--------GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 92 ~V~v~Gri~~---~R~~--g~kl~Fi~l~------d~--------~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.|+|.|||.. +|.. |..++-+.|. |. +..+.|++-.+. .+ ...+.|..||.|.|+
T Consensus 10 ~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~----Ae--~~~~~l~KG~~V~Ve 83 (158)
T 3tqy_A 10 KVILIGNLGQDPEVRYTPNGNAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRL----AE--IVGEYLRKGSKIYIE 83 (158)
T ss_dssp EEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHH----HH--HHHHHCCTTCEEEEE
T ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHH----HH--HHHhhcCCCCEEEEE
Confidence 5889999986 5543 4344433332 21 235677776642 12 234569999999999
Q ss_pred eeccc----ccCCc----eeEeeeeEEEeccC
Q psy11418 153 GSPGK----TKKGE----LSIIPKKLTLLSPC 176 (553)
Q Consensus 153 G~~~~----t~~ge----~~l~~~~i~il~~~ 176 (553)
|.+.. .+.|. ++|.|.+|.+|...
T Consensus 84 G~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k 115 (158)
T 3tqy_A 84 GSLRTRKWQDKNGVDRYTTEIIANEMHMLDNR 115 (158)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEEEEEECC--
T ss_pred EEEEeeeEECCCCCEEEEEEEEEeEEEEccCC
Confidence 99863 23443 78999999999643
No 112
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=81.77 E-value=13 Score=31.77 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=39.3
Q ss_pred EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc-ccC-CceeEeeeeEEEeccCCCCCC
Q psy11418 120 KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK-TKK-GELSIIPKKLTLLSPCLHMLP 181 (553)
Q Consensus 120 ~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~-t~~-ge~~l~~~~i~il~~~~~~lP 181 (553)
.|+|++..+. .++ .+.+..|+-|.|+|.+.. ++. ..++|+++.|+.+++....-|
T Consensus 48 ~i~vv~~Gk~----AE~---~~~l~kGs~V~VeGrL~trs~~G~kl~l~a~~Ie~l~~~~~~~~ 104 (115)
T 3fhw_A 48 TISAVALGDL----ALL---LADTPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGSMGRDP 104 (115)
T ss_dssp EEEEEEETHH----HHH---HTTCCTTCEEEEEEEEEESSTTCSSEEEEEEEEEECCCSCCC--
T ss_pred EEEEEEEhHH----HHh---hhccCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEcCCCCCCCC
Confidence 3888887653 222 377999999999999873 433 357899999999976644333
No 113
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=81.15 E-value=3 Score=47.58 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=68.2
Q ss_pred HHHHHHHhhhCCeEEEecceecccc-----CCCCCcceeeccCCCCcc-eeeeeCHHHHHHHHHH----ccCC--cEEEE
Q psy11418 218 IAYVRRYLDSLGFLEVETPMMNMIA-----GGATAKPFVTHHNDLNMD-LYMRIAPELYLKMLVV----GGLD--RVYEV 285 (553)
Q Consensus 218 ~~~ir~fl~~~gF~EV~TPil~~~~-----gga~a~~F~t~~~~~~~~-~~L~~Spql~lk~l~~----~g~~--rVfei 285 (553)
.+.+|+.|...||.||-|-.+.+.. +.. ..+... .|-...+ -.||.|.=--|=..+. .+.. |+|||
T Consensus 495 ~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~~-~~~v~l-~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFEi 572 (795)
T 3pco_B 495 LKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPG-VEALLL-PSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFES 572 (795)
T ss_dssp HHHHHHHHHHTTCEECCCCSEECHHHHHHHSSS-CCCCBC-SSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEEEE
T ss_pred HHHHHHHHHHCCCeeeeccCcCCHHHHHhhCCC-CCeEEE-cCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEe
Confidence 4578999999999999999996421 111 112211 2333333 4588874322211222 2333 89999
Q ss_pred ccccccCCCCCCccCCcceeeeEecc-------------CCHHHHHHHHHHHHhcc
Q psy11418 286 GRQFRNEGIDLTHNPEFTTCEFYMAY-------------ADYNDLMHLTEDLISGR 328 (553)
Q Consensus 286 ~~~FR~E~~~~~H~~EFt~lE~e~a~-------------~~~~~~m~~~e~li~~~ 328 (553)
|+||+.++....+..|..++-+-+++ .|+.|+...+|.++..+
T Consensus 573 G~Vf~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~l 628 (795)
T 3pco_B 573 GLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLT 628 (795)
T ss_dssp EEEEEECTTSSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTS
T ss_pred eeEEecCCCcccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHc
Confidence 99998765433444566666655443 47999999999999877
No 114
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=80.73 E-value=6.8 Score=33.32 Aligned_cols=79 Identities=16% Similarity=0.368 Sum_probs=48.7
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE-e----------CCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeec
Q psy11418 92 TLSVAGRVHA---IRE--SGTKLMFYDLR-G----------EGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSP 155 (553)
Q Consensus 92 ~V~v~Gri~~---~R~--~g~kl~Fi~l~-d----------~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~ 155 (553)
.|.|.|+|.+ +|. .|..++-+.|. + .+..++|++-.+. .+ ...+.|..||.|.|+|.+
T Consensus 7 ~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~----Ae--~~~~~l~KG~~V~V~G~l 80 (116)
T 3vdy_A 7 QVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKT----AE--NTALYCQKGSLVGVSGRI 80 (116)
T ss_dssp CEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHH----HH--HHHHHCCTTCEEEEEEEE
T ss_pred EEEEEEEEccCcEEEECCCCCEEEEEEEEEeccccCCCCccccEEEEEEEECHH----HH--HHHHhCCCCCEEEEEEEE
Confidence 4788888876 453 34334433332 1 1235888877652 12 234569999999999998
Q ss_pred ccc----cCCc----eeEeeeeEEEeccC
Q psy11418 156 GKT----KKGE----LSIIPKKLTLLSPC 176 (553)
Q Consensus 156 ~~t----~~ge----~~l~~~~i~il~~~ 176 (553)
... +.|+ ++|.|++|.+|++.
T Consensus 81 ~~~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 81 QTRSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EEEEEC----CCEEEEEEEEEEEEECC--
T ss_pred EeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 632 3343 68999999998654
No 115
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=79.90 E-value=11 Score=44.13 Aligned_cols=81 Identities=25% Similarity=0.254 Sum_probs=59.2
Q ss_pred cEEEEEEEEEeeec----CCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccccc-CCceeE
Q psy11418 91 VTLSVAGRVHAIRE----SGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK-KGELSI 165 (553)
Q Consensus 91 ~~V~v~Gri~~~R~----~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~-~ge~~l 165 (553)
..|+|.|.|-.+-. .|+.+.-+.|.|.++.|.|..-.+. .+ -.+....|..|++|.|.|.+.-.+ .+++.+
T Consensus 18 ~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~~~~k~f~~~---~~-~~~~~~~~~~g~~~~~~g~~~~d~~~~~~~~ 93 (1041)
T 3f2b_A 18 RRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNSILVKMFSRD---KE-DAELMSGVKKGMWVKVRGSVQNDTFVRDLVI 93 (1041)
T ss_dssp EEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCEEEEEEECSS---HH-HHHHHHTCCTTCEEEEEEEEEEETTTTEEEE
T ss_pred ceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCCEEEEEeecc---cc-hHHHHhcCCCCCEEEEEEEEEeccCCcceEE
Confidence 46999999986632 4667777899999988877554332 12 124467799999999999987543 678889
Q ss_pred eeeeEEEecc
Q psy11418 166 IPKKLTLLSP 175 (553)
Q Consensus 166 ~~~~i~il~~ 175 (553)
.+.++..+.+
T Consensus 94 ~~~~~~~~~~ 103 (1041)
T 3f2b_A 94 IANDLNEIAA 103 (1041)
T ss_dssp EEEEEEEECC
T ss_pred EeeeeEEecc
Confidence 9988876654
No 116
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=79.21 E-value=19 Score=29.94 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=33.5
Q ss_pred EEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc--cCC--ceeEeeeeEEEecc
Q psy11418 121 IQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT--KKG--ELSIIPKKLTLLSP 175 (553)
Q Consensus 121 iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t--~~g--e~~l~~~~i~il~~ 175 (553)
++|++-.+.. + ...+.|..|+.|.|+|.+... +.| ..+|.+++++.|+.
T Consensus 50 ~~vv~~g~~A---e---~~~~~l~KG~~V~V~G~L~~~~~~~G~~r~~v~~~~i~~l~~ 102 (104)
T 1txy_A 50 MPVIVSGHEN---Q---AITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDS 102 (104)
T ss_dssp EEEEEESSTT---H---HHHTTCCTTCEEEEEEEEEC--------CCEEEEEEEEEC--
T ss_pred EEEEEEhHHH---H---HHHhhCCCCCEEEEEEEEEeccCCCCCEEEEEEEEEEEECcC
Confidence 8888876532 2 235679999999999998643 222 28899999998853
No 117
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=75.71 E-value=11 Score=33.09 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=35.6
Q ss_pred EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc----ccCCc----eeEeeeeEEEecc
Q psy11418 120 KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK----TKKGE----LSIIPKKLTLLSP 175 (553)
Q Consensus 120 ~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~----t~~ge----~~l~~~~i~il~~ 175 (553)
.+.|++-.+. .+ ...+.|..||.|.|+|.+.. .+.|+ ++|.|++|.+|..
T Consensus 50 ~~~v~~wg~~----Ae--~~~~~l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~ 107 (134)
T 2vw9_A 50 FIDARLFGRT----AE--IANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDK 107 (134)
T ss_dssp EEEEEEEHHH----HH--HHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCC
T ss_pred EEEEEEEcHH----HH--HHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccC
Confidence 5777777542 22 23456999999999999863 23443 6789999999864
No 118
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=75.09 E-value=5.3 Score=42.16 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=54.8
Q ss_pred EEEEEEEEEee---e------cCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc----
Q psy11418 92 TLSVAGRVHAI---R------ESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT---- 158 (553)
Q Consensus 92 ~V~v~Gri~~~---R------~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t---- 158 (553)
.++|.|||.++ | ..| ++.-++|.|.+|.|++++..+.. + .+...|..|+++.|.+--++.
T Consensus 15 ~w~I~~rV~~k~~ir~~~~~~~~g-~~~~~~L~De~G~I~at~~~~~~---~---~f~~~l~eG~vy~Is~~~V~~~~~~ 87 (444)
T 4gop_C 15 RWTIKARVTSKSDIRHWSNQRGEG-KLFSVNLLDDSGEIKATGFNDAV---D---RFYPLLQENHVYLISKARVNIAKKQ 87 (444)
T ss_dssp SCEEEEECCEECCCEEEECSSCEE-EEEEEEEECSSCEEEEEEETHHH---H---HHTTTCCTTCEEEEESCEEEECCGG
T ss_pred ceEEEEEEEEccCcceecCCCCCc-eEEEEEEEcCCCEEEEEEeHHHH---H---HHHHheecCCEEEEcCCEEEecCCc
Confidence 37899999853 3 234 78889999999999999987532 2 335679999999999743322
Q ss_pred ---cCCceeEeeeeEEEeccC
Q psy11418 159 ---KKGELSIIPKKLTLLSPC 176 (553)
Q Consensus 159 ---~~ge~~l~~~~i~il~~~ 176 (553)
-.+.++|....-+.+.+|
T Consensus 88 y~~~~~~~ei~~~~~T~V~~~ 108 (444)
T 4gop_C 88 FSNLQNEYEITFENSTEIEEC 108 (444)
T ss_dssp GCSCCCSEEEEECTTCEEEEC
T ss_pred cccCCCCEEEEEcCCcEEEEc
Confidence 135678877655555554
No 119
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=74.78 E-value=2.2 Score=42.75 Aligned_cols=61 Identities=11% Similarity=0.028 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhCCcEEeeCceeeccCCCc-ce-eeeeec------CCCCCcceeEEeChhHHHHHh
Q psy11418 428 RAQIIAYVRRYLDSLGFLEVETPMMNMIAGGA-TA-KPFVTH------HNDLNMDLYMRIAPELYLKST 488 (553)
Q Consensus 428 Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~ga-~~-~~~~t~------~~~~~~~~yL~~Spel~~k~l 488 (553)
.+.+.+.||++|..+||.||++|.+.+...+. .+ +|.... .-+.....+|++|.-..++++
T Consensus 55 ~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~e~~vLRtsl~p~ll~~ 123 (294)
T 2rhq_A 55 LTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQART 123 (294)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSSSSEEECSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEcCcceeeccCHHHHHHH
Confidence 35678899999999999999999997653211 11 221100 012234567887766655554
No 120
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=73.00 E-value=12 Score=33.61 Aligned_cols=79 Identities=16% Similarity=0.275 Sum_probs=47.8
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE-eC------------CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEe
Q psy11418 92 TLSVAGRVHA---IRE--SGTKLMFYDLR-GE------------GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTG 153 (553)
Q Consensus 92 ~V~v~Gri~~---~R~--~g~kl~Fi~l~-d~------------~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G 153 (553)
.|.|.|||.+ +|. .|..++-+.|. +. +..+.|++-.+. .+ ...+.|..||.|.|.|
T Consensus 18 ~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~----Ae--~~~~~l~KG~~V~VeG 91 (153)
T 1z9f_A 18 KIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRL----AE--FARTYLTKGRLVLVEG 91 (153)
T ss_dssp CEEEEEEESSCCEEEECC--CEEEEEEEEEEC-----------CEEEEEEEEEHHH----HH--HHHHHCCTTCEEEEEE
T ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHH----HH--HHHhhCCCCCEEEEEE
Confidence 4889999887 453 34344434432 21 225777776542 22 2346699999999999
Q ss_pred ecccc----cCCc----eeEeeeeEEEeccC
Q psy11418 154 SPGKT----KKGE----LSIIPKKLTLLSPC 176 (553)
Q Consensus 154 ~~~~t----~~ge----~~l~~~~i~il~~~ 176 (553)
.+... +.|. ++|.|.+|.+|...
T Consensus 92 rL~~~~~~dkdG~~r~~~eV~a~~i~~l~~~ 122 (153)
T 1z9f_A 92 EMRMRRWETPTGEKRVSPEVVANVVRFMDRK 122 (153)
T ss_dssp EEEEEC-------CCCEEEEEEEEEEECC--
T ss_pred EEEeceEECCCCCEEEEEEEEEEEEEEccCC
Confidence 98632 2333 78999999999653
No 121
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=71.77 E-value=11 Score=32.13 Aligned_cols=51 Identities=14% Similarity=0.274 Sum_probs=36.7
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEe-CCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecc
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRG-EGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPG 156 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d-~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~ 156 (553)
.|++|+|-|+|.+.+. + . +.|.. +++.+.|.++.+. .+..+.+|.|.|++.
T Consensus 17 ~g~~VrivGkV~~~~g-~--~--~~l~s~d~~~Vtv~l~~~~------------~~~~~~~vEViG~V~ 68 (114)
T 4gop_A 17 VGQTVRIVGKVHKVTG-N--T--LLMQTSDLGNVEIAMTPDS------------DVSSSTFVEVTGKVS 68 (114)
T ss_dssp TTSEEEEEEEEEEEET-T--E--EEEECTTSCEEEEECCSSC------------CGGGCSEEEEEEEEC
T ss_pred CCCeEEEEEEEeeeCC-C--E--EEEEeCCCCEEEEEeCCCC------------CcccCcEEEEEEEEc
Confidence 6789999999999995 3 2 44554 3357776665431 245789999999987
No 122
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=71.61 E-value=23 Score=31.53 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=46.4
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEe-CCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEee
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRG-EGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIP 167 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d-~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~ 167 (553)
.|++|+|-|+|.++-..| +. +.|.. +++.|+|..+.... -..+-+|.|.|++.. ..+|.+
T Consensus 42 vGk~VriVGkV~~~~~~G-~~--~~l~s~Dg~~VtV~l~~pL~------------~~~~~~VEViG~V~~----~~tI~~ 102 (142)
T 2pi2_E 42 IDKPVCFVGRLEKIHPTG-KM--FILSDGEGKNGTIELMEPLD------------EEISGIVEVVGRVTA----KATILC 102 (142)
T ss_dssp TTCEEEEEEEEEEECTTS-SE--EEEECTTSCEEEEECSSCCS------------SCCCSEEEEEEEECT----TSCEEE
T ss_pred CCCEEEEEEEEeEEcCCC-CE--EEEEeCCCcEEEEEeCCCCC------------ccCCCEEEEEEEECC----CCcEEE
Confidence 688999999999995455 32 34444 34578887654210 134779999999963 356778
Q ss_pred eeEEEeccC
Q psy11418 168 KKLTLLSPC 176 (553)
Q Consensus 168 ~~i~il~~~ 176 (553)
..+.-++..
T Consensus 103 ~~~~~fGd~ 111 (142)
T 2pi2_E 103 TSYVQFKED 111 (142)
T ss_dssp EEEEECCCS
T ss_pred EEEEecCCC
Confidence 777666543
No 123
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=65.76 E-value=30 Score=30.56 Aligned_cols=78 Identities=13% Similarity=0.248 Sum_probs=50.8
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE-e-------------CCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 92 TLSVAGRVHA---IRE--SGTKLMFYDLR-G-------------EGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 92 ~V~v~Gri~~---~R~--~g~kl~Fi~l~-d-------------~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.|+|.|||.+ +|. .|..++-+.|. + .+..+.|++-.+. .+ ...+.|..||.|.|+
T Consensus 7 ~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~----Ae--~~~~~l~KG~~V~V~ 80 (145)
T 1qvc_A 7 KVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKL----AE--VASEYLRKGSQVYIE 80 (145)
T ss_dssp EEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHH----HH--HHHHHCCTTCEEEEE
T ss_pred EEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHH----HH--HHHHhcCCCCEEEEE
Confidence 5888899886 454 34445544443 1 1346888887653 22 234569999999999
Q ss_pred eeccc----ccCCc----eeE---eeeeEEEecc
Q psy11418 153 GSPGK----TKKGE----LSI---IPKKLTLLSP 175 (553)
Q Consensus 153 G~~~~----t~~ge----~~l---~~~~i~il~~ 175 (553)
|.+.. .+.|. ++| .+.+|.+|..
T Consensus 81 G~L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~ 114 (145)
T 1qvc_A 81 GQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGG 114 (145)
T ss_dssp EEEEEEEECSSSSCEEEEEEEECTTCEEEECCCC
T ss_pred EEEEeeEEECCCCcEEEEEEEeeeEeCEEEEccC
Confidence 99863 23443 577 7788888854
No 124
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=65.15 E-value=55 Score=29.15 Aligned_cols=72 Identities=21% Similarity=0.164 Sum_probs=49.9
Q ss_pred cEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeE
Q psy11418 91 VTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKL 170 (553)
Q Consensus 91 ~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i 170 (553)
..|.+.|.|... ..| . +.|.|++|.+-+-- .+... .-...++.|..|.|.|.+.. ...+..|.+.++
T Consensus 59 s~VWmQG~VV~~-~~g-~---~~LdDgTG~~~v~g-~~~vp------~g~p~l~~G~YVMV~G~v~~-~s~eP~i~AvKm 125 (150)
T 3mxn_B 59 AAVWMQGRVVMA-DRG-E---ARLRDPSGDFSVRG-LERVP------RGRPCLVPGKYVMVMGVVQA-CSPEPCLQAVKM 125 (150)
T ss_dssp SEEEEEEEEEEE-ETT-E---EEEEETTEEEEEEC-GGGSC------CCSCCCSTTCEEEEEEEEEE-CSSSCEEEEEEE
T ss_pred EEEEEEeEEEEe-CCC-e---EEEECCCceEEEee-ccccC------CCCcccCCCCEEEEEEEEEe-cCCCceEEEEEe
Confidence 569999999997 555 2 77999999765422 12110 00124789999999999775 344788888877
Q ss_pred EEecc
Q psy11418 171 TLLSP 175 (553)
Q Consensus 171 ~il~~ 175 (553)
.=||.
T Consensus 126 ~DLS~ 130 (150)
T 3mxn_B 126 TDLSD 130 (150)
T ss_dssp EECCS
T ss_pred eeCCC
Confidence 76665
No 125
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=64.98 E-value=40 Score=28.04 Aligned_cols=45 Identities=16% Similarity=0.098 Sum_probs=33.1
Q ss_pred EEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc--cCCceeEeeeeEEEe
Q psy11418 121 IQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT--KKGELSIIPKKLTLL 173 (553)
Q Consensus 121 iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t--~~ge~~l~~~~i~il 173 (553)
++|++-.+. .+ ...|..|+-|.|+|.+... +...+.+++++|+.+
T Consensus 55 i~vv~~gk~-------Ae-~~~l~KG~~v~veGrL~~rs~~~~~lvlhi~~i~~i 101 (103)
T 3k8a_A 55 IPARILGRQ-------AE-EWQYRQGDCATVEGFLAQKSRRSLMPMLRIQNIKEY 101 (103)
T ss_dssp EEEEEEHHH-------HH-HSTTCTTCEEEEEEEEEESSSSCCCEEEEEEEEEEC
T ss_pred EEEEEEhHH-------hh-hhccCCCCEEEEEEEEEECccCCccEEEEEEEEEEc
Confidence 677776542 13 4559999999999998733 233788999999876
No 126
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=63.73 E-value=30 Score=29.56 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=47.0
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE------e---C-----CEEEEEEEec-ccCCCHHHHHHHhccCCCCcEEEE
Q psy11418 92 TLSVAGRVHA---IRE--SGTKLMFYDLR------G---E-----GLKIQVMANA-RMYQSEEEFASDLVKIKRGDIIGV 151 (553)
Q Consensus 92 ~V~v~Gri~~---~R~--~g~kl~Fi~l~------d---~-----~~~iQvv~~~-~~~~~~~~~~~~~~~l~~gd~V~v 151 (553)
.|.|.|||.+ +|. .|+.++-+.|. | | +..+.|++-. +. .+ ...+.|..||.|.|
T Consensus 8 ~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~----Ae--~~~~~l~KG~~V~V 81 (124)
T 3ulp_A 8 KIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNI----VD--LIDKYLRKGRRVYV 81 (124)
T ss_dssp EEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHH----HH--HHHHHCCTTCEEEE
T ss_pred EEEEEEEECCCcEEEECCCCCEEEEEEEEEccceecccCCcEecccEEEEEEEEEchH----HH--HHHhhcCCCCEEEE
Confidence 5888888876 453 34344444432 1 1 2247777765 32 22 23456999999999
Q ss_pred Eeeccc----cc--CCc----eeEeee----eEEEecc
Q psy11418 152 TGSPGK----TK--KGE----LSIIPK----KLTLLSP 175 (553)
Q Consensus 152 ~G~~~~----t~--~ge----~~l~~~----~i~il~~ 175 (553)
+|.+.. .+ .|+ .+|.|+ ++++|+.
T Consensus 82 ~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~ 119 (124)
T 3ulp_A 82 QGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDD 119 (124)
T ss_dssp EEEEEEEEECC----CCCEEEEEEEECTTTCEEEECC-
T ss_pred EEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecC
Confidence 999862 23 443 677786 7888754
No 127
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=63.50 E-value=27 Score=30.33 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=47.4
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE------e-------------CCEEEEEEEecccCCCHHHHHHHhccCCCCc
Q psy11418 92 TLSVAGRVHA---IRE--SGTKLMFYDLR------G-------------EGLKIQVMANARMYQSEEEFASDLVKIKRGD 147 (553)
Q Consensus 92 ~V~v~Gri~~---~R~--~g~kl~Fi~l~------d-------------~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd 147 (553)
.|.|.|||.. +|. .|..++-+.|. | .+..+.|++-.+. ...+ ..+.|..||
T Consensus 16 ~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~---~Ae~--~~~~l~KG~ 90 (132)
T 3ull_A 16 RVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPG---LRDV--AYQYVKKGS 90 (132)
T ss_dssp EEEEEEEECSCCEEECCTTSCCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTT---HHHH--HHHHCCTTC
T ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchH---HHHH--HHhhCCCCC
Confidence 5889999986 553 34344433332 1 0123555555421 1222 346799999
Q ss_pred EEEEEeecccc----cCC----ceeEeeeeEEEeccC
Q psy11418 148 IIGVTGSPGKT----KKG----ELSIIPKKLTLLSPC 176 (553)
Q Consensus 148 ~V~v~G~~~~t----~~g----e~~l~~~~i~il~~~ 176 (553)
.|.|.|.+... +.| .++|.|.+|.+|++.
T Consensus 91 ~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 91 RIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp EEEEEEEEECCCEESSSSEECCCEEEEEEEEECC---
T ss_pred EEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 99999998632 233 478999999988654
No 128
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=62.32 E-value=5.4 Score=42.33 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.-++++..+.+.+|+.|...||.||.||+|....
T Consensus 65 ~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~e 98 (458)
T 2i4l_A 65 LGHRVLKKIEQIVREEQNRAGAIELLMPTLQLAD 98 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHH
Confidence 3578899999999999999999999999999875
No 129
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=60.97 E-value=6 Score=41.04 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.-.+++..+.+.+|+.|...||.||.||+|....
T Consensus 28 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~ 61 (401)
T 1evl_A 28 DGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRV 61 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHH
Confidence 3467899999999999999999999999999876
No 130
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=60.40 E-value=7.5 Score=44.22 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=50.6
Q ss_pred CCcEEEEEEEEEeeec--CC-CceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCC--CcEEEEEeeccccc-CCc
Q psy11418 89 ENVTLSVAGRVHAIRE--SG-TKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKR--GDIIGVTGSPGKTK-KGE 162 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~--~g-~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~--gd~V~v~G~~~~t~-~ge 162 (553)
.|+.|+|.|.|.+... .| ++..=+.+.|+++.+++++-...+ ..+.+.. |+.+.|.|++.... .|.
T Consensus 164 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~~~--------~~~~~~~~~g~~~~~~G~~~~~~~~~~ 235 (780)
T 1gm5_A 164 PGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQDY--------LQTYLKQLTGKEVFVTGTVKSNAYTGQ 235 (780)
T ss_dssp SSCCCEEEECCCCCEEEECSSCEEEEEEECCSSCCEEEEECSCCT--------THHHHHTTCSSCEEEEEEECSCCTTSS
T ss_pred CCCEEEEEEEEEEEEeecCCCCeEEEEEEEECCceEEEEEECcHH--------HHhhCccCCCCEEEEEEEEEEccCCCc
Confidence 4667999999987632 23 244456778999999998865322 1234567 99999999997631 345
Q ss_pred eeEeeeeEEEe
Q psy11418 163 LSIIPKKLTLL 173 (553)
Q Consensus 163 ~~l~~~~i~il 173 (553)
+++.--++.+.
T Consensus 236 ~~~~~p~~~~~ 246 (780)
T 1gm5_A 236 YEIHNAEVTPK 246 (780)
T ss_dssp CCEEEEEEECS
T ss_pred EEEEcCEEeec
Confidence 55544445443
No 131
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=60.09 E-value=42 Score=29.86 Aligned_cols=58 Identities=16% Similarity=0.071 Sum_probs=43.6
Q ss_pred ceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEeeeeEEEecc
Q psy11418 108 KLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSP 175 (553)
Q Consensus 108 kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~~~i~il~~ 175 (553)
.++=+.|-|.+|.|-+.+..+. ...+..||+|.+.+-..+.-+|.++|.+..+.-+.+
T Consensus 62 ~V~~~lVgDeTG~I~ftlW~e~----------~~~l~~Gd~v~i~na~v~~~~G~~~L~vgk~g~Ie~ 119 (145)
T 1wjj_A 62 RIVECLIGDETGCILFTARNDQ----------VDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEA 119 (145)
T ss_dssp CCEEEEEECSSCEEEEEECTTH----------HHHTCTTCEEEEEEEEEEEETTEEEEEECTTCCBCC
T ss_pred eEEEEEEEcCCcEEEEEEecCC----------cCcCCCCCEEEEeccEEEeECCEEEEEECCCEEEEE
Confidence 5777888999999988887642 223789999999986666678889998876544433
No 132
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=58.39 E-value=38 Score=26.41 Aligned_cols=63 Identities=24% Similarity=0.240 Sum_probs=39.7
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEee
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIP 167 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~ 167 (553)
.+.|.|.++...| +|++|.++ +...+..+..... + ...+..||.|.|.=.-....+|.+.+..
T Consensus 8 iv~G~V~~v~~~G---~fV~l~~~---~~Gllh~sel~~~--~---~~~~~~Gd~V~v~V~~vd~~~~~i~lsl 70 (80)
T 2k52_A 8 FYKGVVTRIEKYG---AFINLNEQ---VRGLLRPRDMISL--R---LENLNVGDEIIVQAIDVRPEKREIDFKY 70 (80)
T ss_dssp EEEEEEEEEETTE---EEEEEETT---EEEEECGGGCSSC--C---GGGCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred EEEEEEEEEeCCE---EEEEECCC---CEEEEEHHHCCcc--c---ceeeCCCCEEEEEEEEEECCCCEEEEEE
Confidence 3899999999888 79999764 5566665543111 0 1469999999875221222345555543
No 133
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=57.71 E-value=6.9 Score=41.21 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 422 RHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 422 ~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
-.-.+.+..+...+|+.|...||.||.||+|....
T Consensus 25 P~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~e 59 (464)
T 4g84_A 25 PRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKE 59 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHH
Confidence 34568899999999999999999999999997653
No 134
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=57.63 E-value=95 Score=27.28 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=50.7
Q ss_pred cCCcEEEEEEEEE--eeecC--CCceEEEEEEe-CCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCc
Q psy11418 88 LENVTLSVAGRVH--AIRES--GTKLMFYDLRG-EGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGE 162 (553)
Q Consensus 88 ~~~~~V~v~Gri~--~~R~~--g~kl~Fi~l~d-~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge 162 (553)
..++.++|.|.|. ++... |..+.|. |.| ++..|.|....-. ++ .++-|.-|.|+|.+... |
T Consensus 30 ~~g~~iRvgG~V~~GSv~r~~~~~~v~F~-vtD~~~~~v~V~Y~Gil---PD-------lFrEGqgVVa~G~l~~~--g- 95 (136)
T 1j6q_A 30 EAGQRIRVGGMVTVGSMVRDPNSLHVQFA-VHDSLGGEILVTYDDLL---PD-------LFREGQGIVAQGVLGED--G- 95 (136)
T ss_dssp CTTCEEEEEEEECTTCCEECTTSSCEEEE-EECTTCCCEEEEECSCC---TT-------SCCSSSEEEEEEEECST--T-
T ss_pred CCCCEEEEeEEEeCCcEEecCCCCEEEEE-EEcCCCCEEEEEECCCC---Cc-------cccCCCeEEEEEEECCC--C-
Confidence 4678999999996 45433 4357764 578 7778888877642 22 35889999999998642 2
Q ss_pred eeEeeeeEEEeccCCCC
Q psy11418 163 LSIIPKKLTLLSPCLHM 179 (553)
Q Consensus 163 ~~l~~~~i~il~~~~~~ 179 (553)
.+.|++ ||.||...
T Consensus 96 -~F~A~e--VLaKhdek 109 (136)
T 1j6q_A 96 -KLAATE--VLAKHDEN 109 (136)
T ss_dssp -SEEEEE--EECCC---
T ss_pred -eEEEEE--EEecCCCC
Confidence 355655 89999653
No 135
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=57.42 E-value=7.5 Score=39.62 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.-.+.+..+...+|+.|...||.||.||+|....
T Consensus 34 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~e 67 (344)
T 1z7m_A 34 NQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQ 67 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHH
Confidence 3467889999999999999999999999998764
No 136
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=56.42 E-value=32 Score=33.49 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=51.5
Q ss_pred cEEEEEEEEEe---eec--CCCceEEEEEE-e---------CCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeec
Q psy11418 91 VTLSVAGRVHA---IRE--SGTKLMFYDLR-G---------EGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSP 155 (553)
Q Consensus 91 ~~V~v~Gri~~---~R~--~g~kl~Fi~l~-d---------~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~ 155 (553)
..|.|.|||.+ +|. .|..++-+.|. + .+..+.|++..+. .. ... .|..||.|.|.|.+
T Consensus 129 N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~----Ae--~~~-~l~KG~~V~V~G~l 201 (264)
T 2fxq_A 129 NQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWREL----AE--WAS-ELRKGDGLLVIGRL 201 (264)
T ss_dssp EEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHHH----HH--HHT-TCCTTCEEEEEEEE
T ss_pred EEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEEChH----HH--Hhh-hcCCCCEEEEEEEE
Confidence 35889999987 453 35444444442 2 1236888887642 22 234 89999999999998
Q ss_pred ccc----cCCc----eeEeeeeEEEecc
Q psy11418 156 GKT----KKGE----LSIIPKKLTLLSP 175 (553)
Q Consensus 156 ~~t----~~ge----~~l~~~~i~il~~ 175 (553)
... +.|. ++|.|+.|.+|..
T Consensus 202 ~~~~~~~~dG~~~~~~ev~a~~i~~l~~ 229 (264)
T 2fxq_A 202 VNDSWTSSSGERRFQTRVEALRLERPTR 229 (264)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEECCCC
T ss_pred EeeEEECCCCCEEEEEEEEEEEEEECcc
Confidence 632 3443 6788899988864
No 137
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=55.70 E-value=7.9 Score=39.98 Aligned_cols=32 Identities=9% Similarity=0.257 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 425 FIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 425 l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.+.+..+...+|+.|...||.||.||+|....
T Consensus 37 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~e 68 (373)
T 3rac_A 37 AKRRRAVETRLLSFVEDAGYEPVTSGLFEYVD 68 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCceeeHH
Confidence 57788999999999999999999999998765
No 138
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=55.54 E-value=6.8 Score=40.71 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.-.+++..+.+.+|+.|...||.||.||+|....
T Consensus 14 ~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~ 47 (420)
T 1qe0_A 14 EDSKKWRYIENQLDELMTFYNYKEIRTPIFESTD 47 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEccCcccchHH
Confidence 3567899999999999999999999999999865
No 139
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=54.68 E-value=7.3 Score=38.79 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 429 AQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 429 s~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
..+.+.+|++|...||.||.||.|....
T Consensus 74 ~~l~~~ir~~~~~~Gf~EV~tP~Le~~~ 101 (288)
T 3dsq_A 74 LELEEKLAKALHQQGFVQVVTPTIITKS 101 (288)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHH
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeecHH
Confidence 5788999999999999999999999765
No 140
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=54.57 E-value=19 Score=30.88 Aligned_cols=41 Identities=12% Similarity=0.117 Sum_probs=31.7
Q ss_pred cccCCccEEEEEccccc-CCC-CceeEEeeeEEEEeccCCCCC
Q psy11418 355 VKIKRGDIIGVTGSPGK-TKK-GELSIIPKKLTLLSPCLHMLP 395 (553)
Q Consensus 355 ~~L~~gs~V~V~G~v~~-~~~-g~~El~~~~i~vl~~~~~~~P 395 (553)
..+..|+.|.|+|.+.. ++. ..++|++++++.|+.....-|
T Consensus 62 ~~l~kGs~V~VeGrL~trs~~G~kl~l~a~~Ie~l~~~~~~~~ 104 (115)
T 3fhw_A 62 ADTPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGSMGRDP 104 (115)
T ss_dssp TTCCTTCEEEEEEEEEESSTTCSSEEEEEEEEEECCCSCCC--
T ss_pred hccCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEcCCCCCCCC
Confidence 67899999999999964 333 468999999999987655444
No 141
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=54.13 E-value=1.1e+02 Score=26.78 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=52.6
Q ss_pred cCCcEEEEEEEEE--eeecC--CCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCce
Q psy11418 88 LENVTLSVAGRVH--AIRES--GTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGEL 163 (553)
Q Consensus 88 ~~~~~V~v~Gri~--~~R~~--g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~ 163 (553)
..++.++|.|.|. ++... +..+.| .|.|++..|.|....-. ++ .++-|.-|.|+|.+... |
T Consensus 26 ~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~v~V~Y~Gil---PD-------lFrEGqgVVa~G~l~~~--g-- 90 (136)
T 1sr3_A 26 EVGQRLRVGGMVMPGSVQRDPNSLKVTF-TIYDAEGSVDVSYEGIL---PD-------LFREGQGVVVQGELEKG--N-- 90 (136)
T ss_dssp CTTSEEEEEEEECTTTCEECSSSSEEEE-EEECSSCEEEEEEESCC---CT-------TCCTTSEEEEEEEECSS--S--
T ss_pred CCCCEEEEeeEEeCCcEEEcCCCCEEEE-EEEeCCcEEEEEECCCC---Cc-------cccCCCeEEEEEEECCC--C--
Confidence 3678999999998 45433 335665 56898889988887642 22 35789999999998632 2
Q ss_pred eEeeeeEEEeccCCCC
Q psy11418 164 SIIPKKLTLLSPCLHM 179 (553)
Q Consensus 164 ~l~~~~i~il~~~~~~ 179 (553)
.+.|++ ||.||...
T Consensus 91 ~F~A~e--VLAKhdek 104 (136)
T 1sr3_A 91 HILAKE--VLAKHDEN 104 (136)
T ss_dssp EEEESS--CBCCSCCC
T ss_pred eEEEEE--EEecCCCC
Confidence 355655 89999653
No 142
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=53.78 E-value=9.8 Score=39.65 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.-.+.+..+...+|+.|...||.||.||+|....
T Consensus 22 ~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~e 55 (400)
T 3od1_A 22 EWYKTKKNICDQMTEEINLWGYDMIETPTLEYYE 55 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHH
Confidence 4467889999999999999999999999997664
No 143
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=53.57 E-value=9.5 Score=39.92 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.-++++..+.+.+|+-|...||.||.||+|....
T Consensus 18 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~e 51 (434)
T 1wu7_A 18 EDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLD 51 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHH
Confidence 3568899999999999999999999999999875
No 144
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=53.30 E-value=9.3 Score=39.71 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.-++.+..+.+.+|+-|...||.||.||+|....
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~e 49 (423)
T 1htt_A 16 GETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTP 49 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccCHHH
Confidence 3567899999999999999999999999999864
No 145
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=53.05 E-value=50 Score=32.92 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=49.6
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE------e--C-----CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEe
Q psy11418 92 TLSVAGRVHA---IRE--SGTKLMFYDLR------G--E-----GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTG 153 (553)
Q Consensus 92 ~V~v~Gri~~---~R~--~g~kl~Fi~l~------d--~-----~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G 153 (553)
.|.|.|+|.. +|. .|..++-+.|. | + +..+.|++..+. .+ ...+ |..||.|.|+|
T Consensus 131 ~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~----Ae--~~~~-l~KG~~V~V~G 203 (301)
T 1se8_A 131 EVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDL----AE--NMKE-LRKGDPVMIMG 203 (301)
T ss_dssp EEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHH----HH--HHTT-CCTTCEEEEEE
T ss_pred EEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHH----HH--HHHh-cCCCCEEEEEE
Confidence 4789999987 564 35444444442 1 1 125777777642 22 2345 99999999999
Q ss_pred ecccc----cCC----ceeEeeeeEEEecc
Q psy11418 154 SPGKT----KKG----ELSIIPKKLTLLSP 175 (553)
Q Consensus 154 ~~~~t----~~g----e~~l~~~~i~il~~ 175 (553)
.+... +.| .++|.+++|.+|..
T Consensus 204 rL~~~~y~dkdG~~r~~~ev~a~~i~~l~~ 233 (301)
T 1se8_A 204 RLVNEGWTDKDGNKRNSTRVEATRVEALAR 233 (301)
T ss_dssp EEEEEECC------CEEEEEEEEEEEECCC
T ss_pred EEeeeeEECCCCcEEEEEEEEEEEEEEecc
Confidence 98632 234 37899999999864
No 146
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=53.03 E-value=10 Score=39.85 Aligned_cols=34 Identities=12% Similarity=0.177 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.-.+++..+.+.+++.+.+.||.||.||+|....
T Consensus 170 ~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~ 203 (425)
T 2dq3_A 170 WGARLERALINFMLDLHTKKGYKEICPPHLVKPE 203 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHH
Confidence 4567899999999999999999999999999876
No 147
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=52.73 E-value=7.5 Score=41.83 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 422 RHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 422 ~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
-.-.++|..|...+|+.|...||.||.||+|....
T Consensus 78 P~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~e 112 (517)
T 4g85_A 78 PRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKE 112 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHH
Confidence 34578899999999999999999999999997653
No 148
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=52.29 E-value=59 Score=29.56 Aligned_cols=79 Identities=16% Similarity=0.250 Sum_probs=47.6
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE------e---C-----CEEEEEEEecc-cCCCHHHHHHHhccCCCCcEEEE
Q psy11418 92 TLSVAGRVHA---IRE--SGTKLMFYDLR------G---E-----GLKIQVMANAR-MYQSEEEFASDLVKIKRGDIIGV 151 (553)
Q Consensus 92 ~V~v~Gri~~---~R~--~g~kl~Fi~l~------d---~-----~~~iQvv~~~~-~~~~~~~~~~~~~~l~~gd~V~v 151 (553)
.|.|.|||.+ +|. .|+.++-+.|. | | +..+.|++-.+ . .+ ...+.|..||.|.|
T Consensus 25 kV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~l----Ae--~~~~~l~KG~~V~V 98 (169)
T 3lgj_A 25 KVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHF----AK--IALQYLHKGSKVYI 98 (169)
T ss_dssp EEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECCHHH----HH--HHHHHCCTTCEEEE
T ss_pred EEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHH----HH--HHHHhCCCCCEEEE
Confidence 6999999986 564 34444444332 1 1 23577777654 2 22 23466999999999
Q ss_pred Eeecccc----cCC----ceeEee----eeEEEeccC
Q psy11418 152 TGSPGKT----KKG----ELSIIP----KKLTLLSPC 176 (553)
Q Consensus 152 ~G~~~~t----~~g----e~~l~~----~~i~il~~~ 176 (553)
+|.+... +.| .++|.| .++.+|+..
T Consensus 99 eGrL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k 135 (169)
T 3lgj_A 99 EGKLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAK 135 (169)
T ss_dssp EEEEEEECC--------CEEEEEECTTCCEEEEECC-
T ss_pred EEEEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCC
Confidence 9998632 233 356765 588888643
No 149
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=52.00 E-value=8.5 Score=39.99 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.-.+++..+.+.+|+-|...||.||.||+|....
T Consensus 15 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~e 48 (421)
T 1h4v_B 15 KELRMHQRIVATARKVLEAAGALELVTPIFEETQ 48 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccccHH
Confidence 3467889999999999999999999999998865
No 150
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=51.78 E-value=45 Score=26.74 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=42.8
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecc-cCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEee
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANAR-MYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIP 167 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~-~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~ 167 (553)
.|+ .+.|.|. +...| +|++|.+.. .+...+... .. +.+.+......+ .||.|.|+=.=....+|.+++..
T Consensus 11 vG~--~~~G~V~-v~~fG---~FVel~~~~-~~eGLvhis~el-~~~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lsl 81 (88)
T 1luz_A 11 AGD--VIKGRVY-EKDYA---LYIYLFDYP-HFEAILAESVKM-HMDRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNY 81 (88)
T ss_dssp TTC--EEEEEEE-EETTE---EEEEETTCT-TSEEEEGGGSSC-CHHHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEE
T ss_pred CCC--EEEEEEE-EEccE---EEEEECCCC-CeEEEEEeeHHh-CcccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEE
Confidence 454 4799999 99998 799995421 245566655 54 333333333446 99999885211112356666554
Q ss_pred ee
Q psy11418 168 KK 169 (553)
Q Consensus 168 ~~ 169 (553)
..
T Consensus 82 k~ 83 (88)
T 1luz_A 82 KR 83 (88)
T ss_dssp EE
T ss_pred ee
Confidence 43
No 151
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=51.21 E-value=9.8 Score=40.94 Aligned_cols=33 Identities=3% Similarity=-0.081 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHH--hCCcEEeeCceeeccC
Q psy11418 424 KFIVRAQIIAYVRRYLD--SLGFLEVETPMMNMIA 456 (553)
Q Consensus 424 ~l~~Rs~i~~~iR~f~~--~~~F~EV~TPiL~~~~ 456 (553)
-.+++..|.+.+|+.+. +.||.||.||+|.+..
T Consensus 38 G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~ 72 (505)
T 1ati_A 38 GVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRL 72 (505)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETT
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHH
Confidence 46789999999999999 8999999999999887
No 152
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=51.15 E-value=10 Score=40.33 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.-.+++..+...+|+.|...||.||.||+|....
T Consensus 44 ~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~e 77 (467)
T 4e51_A 44 QDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTP 77 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHH
Confidence 3567899999999999999999999999998765
No 153
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=50.47 E-value=10 Score=40.19 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.-.+.|..+...+|+.|...||.||+||++-...
T Consensus 24 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~ 57 (465)
T 3net_A 24 SEKRLELYLLDTIRRVYESYGFTPIETPAVERLE 57 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHH
Confidence 4567899999999999999999999999996543
No 154
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=50.41 E-value=17 Score=31.56 Aligned_cols=67 Identities=19% Similarity=0.206 Sum_probs=40.5
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccCCceeEee
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIP 167 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ge~~l~~ 167 (553)
.+.|.|.++...| +|++|.++ ++.++....+. ..........+.+||.|.|.=.=.....|.+.|..
T Consensus 10 iv~G~V~~i~~~G---~FV~l~~~---~~Glihisel~-~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSl 76 (130)
T 2k4k_A 10 VYTGKVTGLQAYG---AFVALDEE---TQGLVHISEVT-HGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSI 76 (130)
T ss_dssp EEEEEEEEEETTE---EEEEEETT---EEEEEEGGGTS-SSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEES
T ss_pred EEEEEEEEEeCCe---EEEEECCC---cEEEEEHHHCC-cccccCccccCCCCCEEEEEEEEEeCCCCEEEEEE
Confidence 4789999999888 89999654 66667655431 11011123568999999875211112255555544
No 155
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=50.29 E-value=1.1e+02 Score=25.57 Aligned_cols=73 Identities=10% Similarity=0.110 Sum_probs=43.9
Q ss_pred EEEEEEEEEe---eecC--C-CceEEEEEE-------eCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccc
Q psy11418 92 TLSVAGRVHA---IRES--G-TKLMFYDLR-------GEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKT 158 (553)
Q Consensus 92 ~V~v~Gri~~---~R~~--g-~kl~Fi~l~-------d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t 158 (553)
.|.+.|||.+ +|.. | ..++=+.|. +.+..+.|++-.+. .++ ..+.|..||-|.|+|.+...
T Consensus 13 ~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~----AE~--~~~yl~KG~~V~VeGrL~~r 86 (108)
T 3koj_A 13 SCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGAV----AQE--LQDRCRLNDEVVLEGRLRIN 86 (108)
T ss_dssp EEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETHH----HHH--HHHHCCTTCEEEEEEEEEEE
T ss_pred eEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhHH----HHH--HHHhCCCCCEEEEEEEEEee
Confidence 5889999975 4533 3 234433332 13446888887753 222 34679999999999998632
Q ss_pred ----cCC----ceeEeeeeE
Q psy11418 159 ----KKG----ELSIIPKKL 170 (553)
Q Consensus 159 ----~~g----e~~l~~~~i 170 (553)
+.| ..+|.|+++
T Consensus 87 ~y~~kdG~kr~~tEVva~~i 106 (108)
T 3koj_A 87 SLLKPDGNREKQTELTVTRV 106 (108)
T ss_dssp C--------CCEEEEEEEEE
T ss_pred eEECCCCCEEEEEEEEEEEE
Confidence 223 256666655
No 156
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=49.63 E-value=20 Score=30.02 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=32.5
Q ss_pred ccCCccEEEEEcccccCCCCceeEEeeeEEEEeccCC
Q psy11418 356 KIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLH 392 (553)
Q Consensus 356 ~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~~~ 392 (553)
.+.+||+|.+.|.+.....|++||.+.....+.+|..
T Consensus 66 ~l~~Gdvv~i~g~vk~~~~g~~eL~~g~~~~i~~~~~ 102 (105)
T 3dm3_A 66 DVGRGDYVRVRGYIREGYYGGLECTANYVEILKKGEK 102 (105)
T ss_dssp CCCTTCEEEEEEEEEECTTSSEEEEEEEEEEEECCC-
T ss_pred ccCCCCEEEEEEEEEEccCCCEEEEeCCceEEEeccc
Confidence 6899999999998877777899999999999998753
No 157
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=49.50 E-value=12 Score=39.72 Aligned_cols=34 Identities=15% Similarity=0.328 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.-.+++..+...+|+.|...||.||.||++-...
T Consensus 41 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~e 74 (456)
T 3lc0_A 41 EAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEE 74 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGG
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehh
Confidence 3457899999999999999999999999998775
No 158
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=49.18 E-value=11 Score=41.66 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.-.+++..|.+.+|+.+.+.||.||.||+|....
T Consensus 269 ~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~ 302 (642)
T 1qf6_A 269 DGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRV 302 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHH
Confidence 4578999999999999999999999999999876
No 159
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=49.12 E-value=28 Score=32.16 Aligned_cols=57 Identities=23% Similarity=0.078 Sum_probs=33.4
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.|+ .+.|.|.++...| +|++|.+..+ +...+....+ +...+....+.++.||.|.|.
T Consensus 15 ~G~--iv~G~V~~I~~fG---aFV~L~e~~g-~eGLvhiSel-s~~~v~~~~~~~~vGd~V~Vk 71 (182)
T 1kl9_A 15 VED--VVMVNVRSIAEMG---AYVSLLEYNN-IEGMILLSEL-SRRRIRSINKLIRIGRNECVV 71 (182)
T ss_dssp TTC--EEEEEEEEECSSE---EEEEETTTTT-EEEEEEGGGC-------------CTTCEEEEE
T ss_pred CCC--EEEEEEEEEeccE---EEEEEccCCC-cEEEEEHHHC-CCcccCCHHHhcCCCCEEEEE
Confidence 454 5899999999998 8999953322 6666665544 122222234568999998874
No 160
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=48.43 E-value=13 Score=38.93 Aligned_cols=74 Identities=16% Similarity=0.242 Sum_probs=47.5
Q ss_pred ccceeeecChHHHHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcc-eeeeeecC-CCCCcceeEEeChhHHH
Q psy11418 410 QRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGAT-AKPFVTHH-NDLNMDLYMRIAPELYL 485 (553)
Q Consensus 410 ~R~L~lR~~~~~~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~-~~~~~t~~-~~~~~~~yL~~Spel~~ 485 (553)
.+..++. -.-.+++..+.+.+++.+.+.||.||.||+|.... .+++ +-.|.-.. ..-+.++||.-..|-.+
T Consensus 156 ~G~~~~~-----p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d~~l~L~Pt~e~~~ 230 (421)
T 1ses_A 156 SRSYALK-----GDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAETDLYLTGTAEVVL 230 (421)
T ss_dssp SSCCCEE-----THHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBTTSSEEECSSTHHHH
T ss_pred CCeEEEC-----cHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEEcCCeEEEeecCcHHH
Confidence 4555555 24568899999999999999999999999999876 2222 11111000 00135677776666555
Q ss_pred HHh
Q psy11418 486 KST 488 (553)
Q Consensus 486 k~l 488 (553)
-.+
T Consensus 231 ~~~ 233 (421)
T 1ses_A 231 NAL 233 (421)
T ss_dssp HHT
T ss_pred HHH
Confidence 544
No 161
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=48.43 E-value=12 Score=41.50 Aligned_cols=34 Identities=24% Similarity=0.356 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.-.+++..+.+.+|+.|.+.||.||.||+|....
T Consensus 269 ~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~ 302 (645)
T 1nyr_A 269 NGATIRREIERYIVDKEVSMGYDHVYTPVLANVD 302 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHH
Confidence 4578999999999999999999999999999875
No 162
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=48.13 E-value=61 Score=32.29 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=48.3
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE-e-------C-----CEEEEEEEecccCCCHHHHHHHhcc-CCCCcEEEEE
Q psy11418 92 TLSVAGRVHA---IRE--SGTKLMFYDLR-G-------E-----GLKIQVMANARMYQSEEEFASDLVK-IKRGDIIGVT 152 (553)
Q Consensus 92 ~V~v~Gri~~---~R~--~g~kl~Fi~l~-d-------~-----~~~iQvv~~~~~~~~~~~~~~~~~~-l~~gd~V~v~ 152 (553)
.|.|.|+|.. +|. .|..++-+.|. + + +..+.|++..+. .+ ...+. |..|+.|.|+
T Consensus 7 ~V~LiGrL~~dPelr~t~~G~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~----Ae--~~~~~~l~KG~~V~Ve 80 (301)
T 1se8_A 7 HVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKP----AE--WQAERNLKGGDAVVVE 80 (301)
T ss_dssp EEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEESHH----HH--HHHHTCCCTTCEEEEE
T ss_pred EEEEEEEECCCceEEECCCCCEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHH----HH--HHHhhCCCCCCEEEEE
Confidence 5888888865 453 34344433332 1 1 125777777542 22 23566 9999999999
Q ss_pred eecccc----cCCc----eeEeeeeEEEeccC
Q psy11418 153 GSPGKT----KKGE----LSIIPKKLTLLSPC 176 (553)
Q Consensus 153 G~~~~t----~~ge----~~l~~~~i~il~~~ 176 (553)
|.+... +.|. ++|.+++|.+|...
T Consensus 81 G~L~~r~~~dkdG~~r~~~ev~a~~i~~l~~~ 112 (301)
T 1se8_A 81 GTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQ 112 (301)
T ss_dssp EEEEEEEEC-----CEEEEEEEEEEEEECSSC
T ss_pred EEEEeeeEECCCCCEEEEEEEEEeEEEEeecc
Confidence 998632 2332 67899999998653
No 163
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=48.03 E-value=67 Score=29.93 Aligned_cols=80 Identities=16% Similarity=0.212 Sum_probs=47.7
Q ss_pred EEEEEEEEEe---eecC--CCceEEEEEE------e---C-----CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 92 TLSVAGRVHA---IRES--GTKLMFYDLR------G---E-----GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 92 ~V~v~Gri~~---~R~~--g~kl~Fi~l~------d---~-----~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.|+|.|||.+ +|.. |+.++-+.|. | + +..+.|++-.+.. .++ ..+.|..||.|.|+
T Consensus 28 kV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~l---Ae~--~~~yL~KGs~V~Ve 102 (193)
T 3pgz_A 28 KVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENL---VKV--VEQYLKKGSKIYIE 102 (193)
T ss_dssp EEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHH---HHH--HHHHCCTTCEEEEE
T ss_pred EEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHH---HHH--HHhhcCCCCEEEEE
Confidence 5899999987 6643 4344444332 1 1 1246777765311 222 34569999999999
Q ss_pred eecccc----cCCc----eeEeee----eEEEeccC
Q psy11418 153 GSPGKT----KKGE----LSIIPK----KLTLLSPC 176 (553)
Q Consensus 153 G~~~~t----~~ge----~~l~~~----~i~il~~~ 176 (553)
|.+... +.|+ ++|.|. +|++|...
T Consensus 103 GrL~trswedkdG~kr~~tEVva~~~~~~i~fL~sk 138 (193)
T 3pgz_A 103 GQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGR 138 (193)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEECTTCCEEEECC--
T ss_pred EEEEEEEeECCCCCEEEEEEEEEEeccCceEECcCC
Confidence 998632 3343 577777 57777643
No 164
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=47.57 E-value=11 Score=38.71 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhCCcEEeeCceeecc
Q psy11418 429 AQIIAYVRRYLDSLGFLEVETPMMNMI 455 (553)
Q Consensus 429 s~i~~~iR~f~~~~~F~EV~TPiL~~~ 455 (553)
+.+.+.||++|...||.||++|.+.+.
T Consensus 104 ~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~ 130 (350)
T 1b7y_A 104 TLMERELVEIFRALGYQAVEGPEVESE 130 (350)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHCCCEEEECcchhcc
Confidence 467889999999999999999999763
No 165
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=47.42 E-value=14 Score=39.45 Aligned_cols=33 Identities=12% Similarity=0.254 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 424 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 424 ~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
-.+++..|.+.+|+.|...||.||.||+|.+..
T Consensus 43 g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~e 75 (477)
T 1hc7_A 43 GYAIWENIQQVLDRMFKETGHQNAYFPLFIPMS 75 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEST
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEecCccccHH
Confidence 467889999999999999999999999999876
No 166
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=47.40 E-value=1.1e+02 Score=25.62 Aligned_cols=76 Identities=14% Similarity=0.346 Sum_probs=47.3
Q ss_pred cEEEEEEEEEee---e--cCCCceEEEEEE-----eCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc--c
Q psy11418 91 VTLSVAGRVHAI---R--ESGTKLMFYDLR-----GEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK--T 158 (553)
Q Consensus 91 ~~V~v~Gri~~~---R--~~g~kl~Fi~l~-----d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~--t 158 (553)
..|.|.|||.+= | ..|.+++=+.|. +....|-|++..+... .-.+..|+.|.|.|.+.. .
T Consensus 12 N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe--------~~~~~kG~~v~v~G~lrsy~~ 83 (107)
T 4gs3_A 12 NTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETKDYLPITISNRLFE--------GMNLEVGTRVKIEGQLRSYNR 83 (107)
T ss_dssp SCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEGGGST--------TCCCCTTCEEEEEEEEEEEEC
T ss_pred CEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhh--------HHhhcCCCEEEEEEEEEecce
Confidence 358899998652 3 244333222222 3345888998876531 123569999999998852 1
Q ss_pred ---cCC----ceeEeeeeEEEec
Q psy11418 159 ---KKG----ELSIIPKKLTLLS 174 (553)
Q Consensus 159 ---~~g----e~~l~~~~i~il~ 174 (553)
+.| -++|.|.+++.|.
T Consensus 84 ~~~~dG~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 84 KSPEEGKNKLILTVFARDISVVP 106 (107)
T ss_dssp C--------EEEEEEEEEEEEEC
T ss_pred EECCCCCEEEEEEEEEEEEEEcc
Confidence 233 2789999998875
No 167
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=46.63 E-value=14 Score=39.28 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 424 KFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 424 ~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
-.+++..|.+.+|+.|...||.||.||+|....
T Consensus 48 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~ 80 (471)
T 3a32_A 48 GGPIRYALAEVLAKFHARRGYYVVETPIIASTE 80 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEETH
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeeehH
Confidence 367889999999999999999999999999876
No 168
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=46.36 E-value=14 Score=40.25 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.-.+++..|.+.+|+.|...||.||.||+|....
T Consensus 45 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~ 78 (572)
T 2j3l_A 45 LANRVLEKLKTIMREEFEKIDAVEMLMPALLPAE 78 (572)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHH
Confidence 3578899999999999999999999999999875
No 169
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=45.37 E-value=73 Score=30.87 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=47.9
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE------e--C-----CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEe
Q psy11418 92 TLSVAGRVHA---IRE--SGTKLMFYDLR------G--E-----GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTG 153 (553)
Q Consensus 92 ~V~v~Gri~~---~R~--~g~kl~Fi~l~------d--~-----~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G 153 (553)
.|.|.|+|.+ +|. .|..++-+.|. | + +..+.|++..+. .+ ...+.|..||.|.|+|
T Consensus 7 ~v~L~G~l~~dpelr~t~~G~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~----Ae--~~~~~l~KG~~V~V~G 80 (264)
T 2fxq_A 7 QVFLIGTLTARPDMRYTPGGLAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQ----AE--MWGDLLEKGQLIFVEG 80 (264)
T ss_dssp EEEEEEEESSCCCCEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHH----HH--HHTTTCCTTCEEEEEE
T ss_pred EEEEEEEeccCCeEEECCCCCEEEEEEEEECCcEECCCCCEecccEEEEEEEEchH----HH--HHHHhCCCCCEEEEEE
Confidence 4788888865 443 34334333332 1 1 124677776542 12 2456799999999999
Q ss_pred eccccc---CC----ceeEeeeeEEEeccC
Q psy11418 154 SPGKTK---KG----ELSIIPKKLTLLSPC 176 (553)
Q Consensus 154 ~~~~t~---~g----e~~l~~~~i~il~~~ 176 (553)
.+.... .| .++|.|.+|.+|...
T Consensus 81 ~L~~~~~~~dG~~r~~~ev~a~~i~~l~~~ 110 (264)
T 2fxq_A 81 RLEYRQWEKDGEKKSEVQVRAEFIDPLEGR 110 (264)
T ss_dssp EEEEC---------CCEEEEEEEEEECCCC
T ss_pred EEEeeeEEeCCEEEEEEEEEEEEEEECcCC
Confidence 985321 23 368899999988643
No 170
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=45.02 E-value=16 Score=39.44 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
...+++..+++.+++.+.++||.||.||.|....
T Consensus 199 ~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~e 232 (522)
T 3vbb_A 199 VLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKE 232 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCcccchH
Confidence 4578999999999999999999999999998876
No 171
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=44.29 E-value=17 Score=38.99 Aligned_cols=63 Identities=11% Similarity=0.154 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcc--------eeeeeecCCCCCcceeEEeChhHHHHHh
Q psy11418 422 RHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGAT--------AKPFVTHHNDLNMDLYMRIAPELYLKST 488 (553)
Q Consensus 422 ~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~--------~~~~~t~~~~~~~~~yL~~Spel~~k~l 488 (553)
-...+++.++++.+++.+.++||.||.||.|.... .+++ +|.+.. -+.++||.-..|-.+=.+
T Consensus 205 p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~----~~~~~~L~PTaE~~l~~l 277 (484)
T 3lss_A 205 GGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSG----DGDKKYLIATSEMPIAAY 277 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEES----SSSCEEECSSTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeec----CCcceEEeccCcHHHHHH
Confidence 44678999999999999999999999999999886 3322 343321 146788887766665444
No 172
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=44.02 E-value=16 Score=38.87 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHH-HhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYL-DSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~-~~~~F~EV~TPiL~~~~ 456 (553)
.-.+++..|.+.+|+.+ .+.||.||.||+|....
T Consensus 62 ~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~ 96 (460)
T 3uh0_A 62 NGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKT 96 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHH
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHH
Confidence 45788999999999999 99999999999998775
No 173
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=43.96 E-value=99 Score=26.50 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=45.9
Q ss_pred ceEEEEEEeCCEEEEE-EEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC-CceeEeeeeEEEecc
Q psy11418 108 KLMFYDLRGEGLKIQV-MANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK-GELSIIPKKLTLLSP 175 (553)
Q Consensus 108 kl~Fi~l~d~~~~iQv-v~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~-ge~~l~~~~i~il~~ 175 (553)
.-.=+.|.||...+|. ++.... .++. .-..|..|++|.++=....+-+ +..-|.+.++++|.+
T Consensus 43 ~RyRl~lSDG~~~~~~~mLatql----n~~v-~~g~l~~~sIirl~~y~~~~v~~~k~vliIl~levl~~ 107 (123)
T 2b29_A 43 PRYRLLMSDGLNTLSSFMLATQL----NPLV-EEEQLSSNCVCQIHRFIVNTLKDGRRVVILMELEVLKS 107 (123)
T ss_dssp CEEEEEEECSSEEEEEEEECGGG----HHHH-HTTSSCTTCEEEEEEEEEEECSSSCEEEEEEEEEEEEC
T ss_pred ceEEEEEECcchheeeehhHHHH----HHHH-hcCCccCCCEEEEEEEEEEEecCCcEEEEEEeeEEeec
Confidence 3444789999999998 887653 2221 2356999999999766544434 677888999999977
No 174
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=42.70 E-value=99 Score=27.92 Aligned_cols=60 Identities=23% Similarity=0.333 Sum_probs=37.2
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEE-e--------------CCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEE
Q psy11418 92 TLSVAGRVHA---IRE--SGTKLMFYDLR-G--------------EGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGV 151 (553)
Q Consensus 92 ~V~v~Gri~~---~R~--~g~kl~Fi~l~-d--------------~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v 151 (553)
.|+|.|+|.+ +|. .|+.++-+.|. + .+..+.|++-.+. .+ ...+.|..||.|.|
T Consensus 6 ~V~LiG~L~~dPelr~t~~G~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~----Ae--~~~~~l~KG~~V~V 79 (168)
T 3afp_A 6 TITIVGNLTADPELRFTSSGAAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREA----AE--NVAESLTRGARVIV 79 (168)
T ss_dssp EEEEEEEESSSCCCEECTTSCEEEEEEEEECC--------CCCCCCCEEEEEEEEHHH----HH--HHHHHCCTTCEEEE
T ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHH----HH--HHHHhCCCCCEEEE
Confidence 5778888875 342 34344433332 1 1346888877653 11 23567999999999
Q ss_pred Eeeccc
Q psy11418 152 TGSPGK 157 (553)
Q Consensus 152 ~G~~~~ 157 (553)
+|.+..
T Consensus 80 eGrL~~ 85 (168)
T 3afp_A 80 TGRLKQ 85 (168)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999863
No 175
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.40 E-value=18 Score=29.93 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=35.7
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.|+ .+.|.|.++...| +|++|.+....+..++...............+.++.||.|.|+
T Consensus 12 vG~--i~~G~V~~v~~fG---~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~Vk 70 (103)
T 2eqs_A 12 IGD--IYNGKVTSIMQFG---CFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVK 70 (103)
T ss_dssp TTC--EEEEEEEEECSSC---EEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEE
T ss_pred CCC--EEEEEEEEEeccE---EEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEE
Confidence 455 4889999999998 7999975211345555544331000000112348999999875
No 176
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=42.34 E-value=19 Score=38.20 Aligned_cols=66 Identities=24% Similarity=0.227 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcc-eeeeeecC-CCCCcceeEEeChhHHHHHh
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGAT-AKPFVTHH-NDLNMDLYMRIAPELYLKST 488 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~-~~~~~t~~-~~~~~~~yL~~Spel~~k~l 488 (553)
.-.+++..+.+.+++.+.+.||.||.||+|.... .+++ +-.|.-.. ..-+.++||+-..|-.+=.+
T Consensus 191 ~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d~~l~LrPt~e~~~~~~ 260 (455)
T 2dq0_A 191 EIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVEDEDLYLIPTAEHPLAGM 260 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBTTSSCEECSSTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeecCCcEEEcCcCcHHHHHH
Confidence 4578889999999999999999999999999887 2222 21111000 00145678877666555444
No 177
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=40.87 E-value=20 Score=38.85 Aligned_cols=61 Identities=16% Similarity=0.284 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcc--------eeeeeecCCCCCcceeEEeChhHHHHHh
Q psy11418 422 RHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGAT--------AKPFVTHHNDLNMDLYMRIAPELYLKST 488 (553)
Q Consensus 422 ~~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~--------~~~~~t~~~~~~~~~yL~~Spel~~k~l 488 (553)
-.-.+++.++.+.+++.+.++||.||.||.|.... .|++ +|.+. +.++||.-..|-.+=.+
T Consensus 272 p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~------~~~~~L~PT~E~~~~~l 342 (536)
T 3err_A 272 GDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA------ETDLYLTGTAEVVLNAL 342 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET------TTTEEECSSTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec------CCCEEEccCCcHHHHHH
Confidence 35678999999999999999999999999999876 3333 22222 24677776655544433
No 178
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=40.51 E-value=21 Score=38.26 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
...+++.++++.+++.+.++||.||.||.|....
T Consensus 183 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~ 216 (485)
T 3qne_A 183 YGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKE 216 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHH
Confidence 4578999999999999999999999999999887
No 179
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=39.82 E-value=22 Score=38.25 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC--CCcc---------eeeeeecCCCCCcceeEEeChhHHHHHh
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGAT---------AKPFVTHHNDLNMDLYMRIAPELYLKST 488 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~--~ga~---------~~~~~t~~~~~~~~~yL~~Spel~~k~l 488 (553)
...++..++.+.+++.+.+.||.||.||.|.... .|++ ++.+.. .-+.++||.-..|-.+=.+
T Consensus 217 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~---~~~~~l~L~PTaE~~~~~l 290 (501)
T 1wle_A 217 AGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDP---SRFEDLNLAGTAEVGLAGY 290 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCT---TTSSSCEECSSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEec---CCCCeEEECCcCcHHHHHH
Confidence 4578889999999999999999999999999876 2222 222210 0135778887666544443
No 180
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=39.43 E-value=21 Score=37.79 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.-.+++..|.+.+|+.|...||.||.||+|....
T Consensus 36 ~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~ 69 (459)
T 1nj8_A 36 YGFKIRRYTFEIIRNLLDESGHDEALFPMLIPED 69 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHH
Confidence 3467899999999999999999999999998765
No 181
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=39.15 E-value=1.6e+02 Score=27.46 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=44.8
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEEe---------------CCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEE
Q psy11418 92 TLSVAGRVHA---IRE--SGTKLMFYDLRG---------------EGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGV 151 (553)
Q Consensus 92 ~V~v~Gri~~---~R~--~g~kl~Fi~l~d---------------~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v 151 (553)
.|+|.|||.+ +|. .|+.++-+.|.- .+..+.|++-.+. .+ ...+.|..||.|.|
T Consensus 6 ~V~LiGrL~~DPElR~T~~G~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~Vvawgkl----AE--~v~~~L~KG~~V~V 79 (199)
T 3eiv_A 6 VITVVGNLVDDPELRFTPSGAAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQA----AE--NVAESLQRGMRVIV 79 (199)
T ss_dssp EEEEEEEESSCCEEEECTTCCEEEEEEEEECC-----------CCCCEEEEEEEETHH----HH--HHHHHCCTTCEEEE
T ss_pred EEEEEEEECCCCeEEECCCCCEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHH----HH--HHHHhcCCCCEEEE
Confidence 5788888875 343 343344333321 2345778877653 12 23457999999999
Q ss_pred Eeecccc----cCC----ceeEeeeeEEE
Q psy11418 152 TGSPGKT----KKG----ELSIIPKKLTL 172 (553)
Q Consensus 152 ~G~~~~t----~~g----e~~l~~~~i~i 172 (553)
+|.+... +.| .++|.|++|.+
T Consensus 80 eGrL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 80 QGRLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp EEEEEEEC--------CCEEEEEEEEEEE
T ss_pred EEEEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 9998632 223 36777777753
No 182
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=38.09 E-value=16 Score=40.94 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHH-hCCcEEeeCceeeccC
Q psy11418 424 KFIVRAQIIAYVRRYLD-SLGFLEVETPMMNMIA 456 (553)
Q Consensus 424 ~l~~Rs~i~~~iR~f~~-~~~F~EV~TPiL~~~~ 456 (553)
-.+++..|.+.+|+.|. ..||.||.||+|.+..
T Consensus 100 G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~ 133 (693)
T 2zt5_A 100 GCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEP 133 (693)
T ss_dssp HHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHH
Confidence 47899999999999998 5699999999999865
No 183
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=37.61 E-value=23 Score=38.20 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.-.+++..|.+.+|+.|.+.||.||.||+|.+..
T Consensus 53 ~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~e 86 (518)
T 3ial_A 53 YGFFMENAIMRLCEEEYAKVGISQILFPTVIPES 86 (518)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHH
Confidence 3568889999999999999999999999998766
No 184
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=37.54 E-value=23 Score=38.20 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.-.+++..|.+.+|+.+.+.||.||.||+|....
T Consensus 59 ~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~ 92 (519)
T 4hvc_A 59 WAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQS 92 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEeccccccHH
Confidence 3467889999999999999999999999998776
No 185
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=36.95 E-value=32 Score=28.99 Aligned_cols=56 Identities=16% Similarity=0.322 Sum_probs=35.6
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.|+ .+.|.|.++...| +|++|.++ +..++.................+.+||.|.|.
T Consensus 30 ~G~--~~~G~V~~v~~~G---~FV~l~~~---~~Glvhisel~~~~~~~~~~~~~~vGd~V~vk 85 (115)
T 2khi_A 30 EGT--KLTGRVTNLTDYG---CFVEIEEG---VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVM 85 (115)
T ss_dssp SSC--EEEEEEEEEETTE---EEEECSTT---CEEEEETTSSSCSSTTCSSTTTCCTTCEEEEE
T ss_pred CCC--EEEEEEEEEECCE---EEEEECCC---CEEEEEHHHCCccccccCcccEECCCCEEEEE
Confidence 565 4899999999988 79999553 55666654431100000112358999999875
No 186
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=36.38 E-value=35 Score=34.42 Aligned_cols=65 Identities=18% Similarity=0.428 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHH-----hCCcEEeeCceeeccCCCcc------eeeeeecCCCC-CcceeEEeChhHHHHHh
Q psy11418 424 KFIVRAQIIAYVRRYLD-----SLGFLEVETPMMNMIAGGAT------AKPFVTHHNDL-NMDLYMRIAPELYLKST 488 (553)
Q Consensus 424 ~l~~Rs~i~~~iR~f~~-----~~~F~EV~TPiL~~~~~ga~------~~~~~t~~~~~-~~~~yL~~Spel~~k~l 488 (553)
.++--...+..+++||. +.|+++|.+|+++....|-+ ..|+.-..... |..+....|-=.|+...
T Consensus 4 ~~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKWKR~a 80 (330)
T 12as_A 4 AYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQT 80 (330)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHHHHHH
Confidence 35566788899999999 99999999999998763321 33333322223 67788888877776654
No 187
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=36.36 E-value=31 Score=31.60 Aligned_cols=54 Identities=22% Similarity=0.076 Sum_probs=32.1
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.+.|.|.++...| +|++|-+..+ +...+....+ +........+.+.+||.|.|.
T Consensus 18 iv~G~V~~i~~fG---aFV~L~e~~g-veGLvhiSel-s~~~v~~~~~~~~vGd~V~vk 71 (175)
T 2a19_A 18 IVMVNVQQIAEMG---AYVKLLEYDN-IEGMILLSEL-SRRRIRSIQKLIRVGKNDVAV 71 (175)
T ss_dssp EEEEEEEEEETTE---EEEEETTTTT-CEEEEECC---------CCCCCCCTTSEEEEE
T ss_pred EEEEEEEEEecce---EEEEEcCCCC-cEEEEEHHHc-CCcccCCHHHcCCCCCEEEEE
Confidence 5899999999998 8999942221 4555554443 111111123458899998874
No 188
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=35.96 E-value=21 Score=38.20 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
.-.+++..|.+.+|+.|.+ ||.||.||+|....
T Consensus 69 ~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~ 101 (501)
T 1nj1_A 69 HGFMIRKNTLKILRRILDR-DHEEVLFPLLVPED 101 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHH
T ss_pred cHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHH
Confidence 3467888999999999999 99999999999876
No 189
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=35.40 E-value=32 Score=29.83 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=27.7
Q ss_pred hhcccCCccEEEEEcccccCC----CC----ceeEEeeeEEEEecc
Q psy11418 353 DLVKIKRGDIIGVTGSPGKTK----KG----ELSIIPKKLTLLSPC 390 (553)
Q Consensus 353 ~~~~L~~gs~V~V~G~v~~~~----~g----~~El~~~~i~vl~~~ 390 (553)
..+.|..|+.|.|+|.+.... .| ..||.|+.+++|.+.
T Consensus 82 ~~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 82 AYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp HHHHCCTTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC---
T ss_pred HHhhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 345689999999999996432 23 589999999998763
No 190
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=34.20 E-value=24 Score=29.77 Aligned_cols=37 Identities=16% Similarity=0.481 Sum_probs=26.5
Q ss_pred hcccCCccEEEEEcccccC----CCC----ceeEEeeeEEEEecc
Q psy11418 354 LVKIKRGDIIGVTGSPGKT----KKG----ELSIIPKKLTLLSPC 390 (553)
Q Consensus 354 ~~~L~~gs~V~V~G~v~~~----~~g----~~El~~~~i~vl~~~ 390 (553)
.+.|..|+.|.|+|.+... +.| ..||.++.+++|.+.
T Consensus 65 ~~~l~KG~~V~V~G~l~~~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 65 ALYCQKGSLVGVSGRIQTRSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp HHHCCTTCEEEEEEEEEEEEEC----CCEEEEEEEEEEEEECC--
T ss_pred HHhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 3457899999999999542 223 489999999998753
No 191
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=33.35 E-value=2.4e+02 Score=27.57 Aligned_cols=71 Identities=21% Similarity=0.198 Sum_probs=47.8
Q ss_pred CCcEEEEEEEEEeeec----CC-CceEEEEEEeCCE-EEEEEEecccCCCHHHHHHHhccC-CCCcEEEEEeecccccCC
Q psy11418 89 ENVTLSVAGRVHAIRE----SG-TKLMFYDLRGEGL-KIQVMANARMYQSEEEFASDLVKI-KRGDIIGVTGSPGKTKKG 161 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~----~g-~kl~Fi~l~d~~~-~iQvv~~~~~~~~~~~~~~~~~~l-~~gd~V~v~G~~~~t~~g 161 (553)
.+..|.|.|.|..+.. .| .-.+-+.|.|.+. .|+|.+-.+.. ..+..+ ..||+|.+...-.++-.|
T Consensus 14 ~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~~gl~v~iF~~~~-------~~LP~v~~~GDII~l~~vki~~~~g 86 (294)
T 1xjv_A 14 GGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCLLFSGNY-------EALPIIYKNGDIVRFHRLKIQVYKK 86 (294)
T ss_dssp SSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCCEEEEEEEESSG-------GGSCCCCSTTCEEEEEEEEEEEETT
T ss_pred CCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCCCCEEEEEECCCh-------HHCCCCCCCCCEEEEEEEEEEEECC
Confidence 4677899999987653 45 3577788889662 46666655421 124445 999999999876666566
Q ss_pred ceeEe
Q psy11418 162 ELSII 166 (553)
Q Consensus 162 e~~l~ 166 (553)
++.+.
T Consensus 87 ~~~~v 91 (294)
T 1xjv_A 87 ETQGI 91 (294)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 65543
No 192
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=33.22 E-value=16 Score=30.48 Aligned_cols=55 Identities=16% Similarity=0.261 Sum_probs=33.7
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.|+ .+.|.|.++...| +|++|.++ +..++...... ..........+.+||.|.|.
T Consensus 31 ~G~--iv~G~V~~v~~~G---~fV~l~~~---~~Gll~~sel~-~~~~~~~~~~~~vGd~V~v~ 85 (109)
T 2khj_A 31 KGA--IVTGKVTAVDAKG---ATVELADG---VEGYLRASEAS-RDRVEDATLVLSVGDEVEAK 85 (109)
T ss_dssp SSS--EEEEEEEEECSSC---EEEECSTT---CBCCBCTTCCC-SSSSSSGGGSCCTTCEEEEE
T ss_pred CCC--EEEEEEEEEECCe---EEEEECCC---CEEEEEHHHcC-cccccChhhccCCCCEEEEE
Confidence 455 4889999999888 79999653 33344433321 10011123458999998874
No 193
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=32.55 E-value=1.4e+02 Score=21.55 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=34.6
Q ss_pred EEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.+.|+|..+...| ..+-+.+.-+++.+-..+.... +. ...|..|+-|.+.
T Consensus 8 ~l~g~V~~i~~~g-~~~~v~l~~~~~~l~a~it~~s------~~--~l~L~~G~~V~~~ 57 (67)
T 1fr3_A 8 KLEATVKEIVKGT-VMAKIVMDYKGTELVAAITIDS------VA--DLDLVPGDKVTAL 57 (67)
T ss_dssp EEEEEEEEEEECS-SEEEEEEEETTEEEEEEEEHHH------HH--HHTCCTTCEEEEE
T ss_pred EEEEEEEEEEeCC-ceEEEEEEeCCCEEEEEeCHHH------HH--hCCCCCCCEEEEE
Confidence 5899999999887 5666777655655655555432 21 2369999999874
No 194
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=32.06 E-value=53 Score=27.29 Aligned_cols=34 Identities=12% Similarity=0.052 Sum_probs=27.4
Q ss_pred hcccCCccEEEEEcccccCC--CCceeEEeeeEEEE
Q psy11418 354 LVKIKRGDIIGVTGSPGKTK--KGELSIIPKKLTLL 387 (553)
Q Consensus 354 ~~~L~~gs~V~V~G~v~~~~--~g~~El~~~~i~vl 387 (553)
+..|..|+.|.|+|.+.... ...+.+++++++.+
T Consensus 66 ~~~l~KG~~v~veGrL~~rs~~~~~lvlhi~~i~~i 101 (103)
T 3k8a_A 66 EWQYRQGDCATVEGFLAQKSRRSLMPMLRIQNIKEY 101 (103)
T ss_dssp HSTTCTTCEEEEEEEEEESSSSCCCEEEEEEEEEEC
T ss_pred hhccCCCCEEEEEEEEEECccCCccEEEEEEEEEEc
Confidence 45599999999999996433 34799999999876
No 195
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=31.22 E-value=43 Score=27.67 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=26.3
Q ss_pred hhcccCCccEEEEEcccccCC--C--CceeEEeeeEEEEec
Q psy11418 353 DLVKIKRGDIIGVTGSPGKTK--K--GELSIIPKKLTLLSP 389 (553)
Q Consensus 353 ~~~~L~~gs~V~V~G~v~~~~--~--g~~El~~~~i~vl~~ 389 (553)
..+.|..|+.|.|+|.+.... . ...||.+++++.|+.
T Consensus 62 ~~~~l~KG~~V~V~G~L~~~~~~~G~~r~~v~~~~i~~l~~ 102 (104)
T 1txy_A 62 ITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDS 102 (104)
T ss_dssp HHTTCCTTCEEEEEEEEEC--------CCEEEEEEEEEC--
T ss_pred HHhhCCCCCEEEEEEEEEeccCCCCCEEEEEEEEEEEECcC
Confidence 345689999999999996532 1 138999999998864
No 196
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.84 E-value=14 Score=31.67 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=32.7
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.|+ .+.|.|.++...| +|++| ++. .+..++....+.. ..+......+.+||.|.|.
T Consensus 22 vG~--iv~G~V~~I~~fG---aFV~l-~g~-~~~Glvhisel~~-~~~~~~~~~~~~Gd~V~Vk 77 (119)
T 2cqo_A 22 LYT--IFQGEVAMVTDYG---AFIKI-PGC-RKQGLVHRTHMSS-CRVDKPSEIVDVGDKVWVK 77 (119)
T ss_dssp TTC--EEEEEEEEEETTE---EEEEC-TTC-SSCEEEEHHHHCS-SCCSCHHHHCCTTCEEEEE
T ss_pred CCC--EEEEEEEEEeCce---EEEEE-CCC-cEEEEEEHHHCCc-ccccChhhcCCCCCEEEEE
Confidence 454 4889999999988 79999 332 1233343322100 0000112348999999874
No 197
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=30.27 E-value=48 Score=29.64 Aligned_cols=38 Identities=11% Similarity=0.267 Sum_probs=27.6
Q ss_pred hhcccCCccEEEEEcccccCC----CC----ceeEEeeeEEEEecc
Q psy11418 353 DLVKIKRGDIIGVTGSPGKTK----KG----ELSIIPKKLTLLSPC 390 (553)
Q Consensus 353 ~~~~L~~gs~V~V~G~v~~~~----~g----~~El~~~~i~vl~~~ 390 (553)
..+.|..|+.|.|+|.+.... .| ..||.|+.+.+|...
T Consensus 77 ~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~eV~a~~i~~l~~~ 122 (153)
T 1z9f_A 77 ARTYLTKGRLVLVEGEMRMRRWETPTGEKRVSPEVVANVVRFMDRK 122 (153)
T ss_dssp HHHHCCTTCEEEEEEEEEEEC-------CCCEEEEEEEEEEECC--
T ss_pred HHhhCCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEEEEEEccCC
Confidence 345589999999999985432 22 489999999999753
No 198
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=29.77 E-value=30 Score=33.80 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=19.4
Q ss_pred HHHHHHhCCcEEeeCceeeccC
Q psy11418 435 VRRYLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 435 iR~f~~~~~F~EV~TPiL~~~~ 456 (553)
+++.|...||.||.||+|-...
T Consensus 12 ~~~~~~~~Gy~eI~tP~le~~~ 33 (275)
T 1usy_A 12 FYSKATKKGFSPFFVPALEKAE 33 (275)
T ss_dssp HHHHHHHTTCEECCCCSEEECS
T ss_pred HHHHHHHCCCEEecCccccchh
Confidence 3499999999999999998765
No 199
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=29.06 E-value=47 Score=28.02 Aligned_cols=54 Identities=17% Similarity=0.333 Sum_probs=34.5
Q ss_pred CCcEEEEEEEEEeeecCCCceEEEEEEeCCEEEEEEEecccCCCHHHHHH---HhccCCCCcEEEEE
Q psy11418 89 ENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFAS---DLVKIKRGDIIGVT 152 (553)
Q Consensus 89 ~~~~V~v~Gri~~~R~~g~kl~Fi~l~d~~~~iQvv~~~~~~~~~~~~~~---~~~~l~~gd~V~v~ 152 (553)
.|+ .+.|.|.++...| +|++|..+. +..++..+.. ..|.. ....+..||.|.|+
T Consensus 21 ~G~--i~~G~V~~v~~fG---~fV~l~~~~--~~~l~~~~~~---~~~~~~~~~~~~~~~Gd~V~vk 77 (119)
T 1wi5_A 21 PGM--LLTGTVSSLEDHG---YLVDIGVDG--TRAFLPLLKA---QEYIRQKNKGAKLKVGQYLNCI 77 (119)
T ss_dssp TTC--EEEEEEEEECSSE---EEEECCCSS--CEEEEEHHHH---HHHHHHHSSSCCCCTTCEEEEE
T ss_pred CCC--EEEEEEEEEeCce---EEEEECCCC--eEEEEEEecc---cccccccCccCEeCCCCEEEEE
Confidence 454 4889999999998 799996222 3344444321 11211 22569999999885
No 200
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=28.42 E-value=48 Score=28.78 Aligned_cols=35 Identities=14% Similarity=0.297 Sum_probs=27.3
Q ss_pred cccCCccEEEEEcccccC----CCC----ceeEEeeeEEEEec
Q psy11418 355 VKIKRGDIIGVTGSPGKT----KKG----ELSIIPKKLTLLSP 389 (553)
Q Consensus 355 ~~L~~gs~V~V~G~v~~~----~~g----~~El~~~~i~vl~~ 389 (553)
+.|..|+.|.|+|.+... +.| ..||.|+.+++|..
T Consensus 65 ~~l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~ 107 (134)
T 2vw9_A 65 QYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDK 107 (134)
T ss_dssp HHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCC
T ss_pred HhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccC
Confidence 457899999999998542 233 38899999999875
No 201
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=28.21 E-value=96 Score=27.09 Aligned_cols=78 Identities=21% Similarity=0.292 Sum_probs=48.8
Q ss_pred EEEEEEEEEe---eec--CCCceEEEEEEe------CC------EEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEee
Q psy11418 92 TLSVAGRVHA---IRE--SGTKLMFYDLRG------EG------LKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGS 154 (553)
Q Consensus 92 ~V~v~Gri~~---~R~--~g~kl~Fi~l~d------~~------~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~ 154 (553)
.|.+.|+|.. +|- .|..++=+.|.- .+ ..++|++..+.. + ...+.|..|+-|.|+|.
T Consensus 21 kViLiGrL~~DPElRyTpsG~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~A---E---~~~~yl~KGs~V~VeGr 94 (134)
T 1v1q_A 21 RLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHEN---Q---AITHSITVGSRITVQGF 94 (134)
T ss_dssp EEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGG---G---GGGTTCCTTCEEEEEEE
T ss_pred EEEEEEEECcCCceEECCCCCEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHH---H---HHHHhcCCCCEEEEEEE
Confidence 5788888775 453 343333333321 11 247888876532 1 13467999999999999
Q ss_pred cccc--cCC--ceeEeeeeEEEecc
Q psy11418 155 PGKT--KKG--ELSIIPKKLTLLSP 175 (553)
Q Consensus 155 ~~~t--~~g--e~~l~~~~i~il~~ 175 (553)
+... +.| .+.+.+++++.|+.
T Consensus 95 L~tr~~k~G~kr~~~~a~~i~~l~~ 119 (134)
T 1v1q_A 95 ISCHKAKNGLSKMVLHAEQIELIDS 119 (134)
T ss_dssp EEEECTTTTSCEEEEEEEEEEETTS
T ss_pred EEEEECCCCCEEEEEEEEEEEECcC
Confidence 8642 233 46678899999864
No 202
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=27.42 E-value=35 Score=30.66 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=28.4
Q ss_pred hhcccCCccEEEEEcccccC----CCC----ceeEEeeeEEEEecc
Q psy11418 353 DLVKIKRGDIIGVTGSPGKT----KKG----ELSIIPKKLTLLSPC 390 (553)
Q Consensus 353 ~~~~L~~gs~V~V~G~v~~~----~~g----~~El~~~~i~vl~~~ 390 (553)
..+.|..|+.|.|+|.+... +.| .+||.|++|++|...
T Consensus 70 ~~~~l~KG~~V~VeG~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k 115 (158)
T 3tqy_A 70 VGEYLRKGSKIYIEGSLRTRKWQDKNGVDRYTTEIIANEMHMLDNR 115 (158)
T ss_dssp HHHHCCTTCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEECC--
T ss_pred HHhhcCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEccCC
Confidence 34568999999999998542 233 489999999999753
No 203
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=25.88 E-value=2.7e+02 Score=22.69 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=50.3
Q ss_pred cCCcEEEEEEEEE--ee-ec-CCCceEEEEEEeC---CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeecccccC
Q psy11418 88 LENVTLSVAGRVH--AI-RE-SGTKLMFYDLRGE---GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK 160 (553)
Q Consensus 88 ~~~~~V~v~Gri~--~~-R~-~g~kl~Fi~l~d~---~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~t~~ 160 (553)
..++.++|.|-|. |+ |. .|..+.| .|.|+ +..+.|....-. ++ .++-|.-|.++|++... .
T Consensus 6 ~~~~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~~~~v~V~Y~Gil---PD-------lFrEGqgVV~~G~l~~~-~ 73 (94)
T 2kct_A 6 DKLHTVRLFGTVAADGLTMLDGAPGVRF-RLEDKDNTSKTVWVLYKGAV---PD-------TFKPGVEVIIEGGLAPG-E 73 (94)
T ss_dssp CTTCCEEEEEEECSTTCEECTTSSEEEE-EEECSSCTTCEEEEEEESCC---CT-------TCCTTCEEEEEEEECTT-C
T ss_pred CCCCeEEEeeEEeCCeEEecCCCCEEEE-EEEcCCCCCcEEEEEECCCC---Cc-------cccCCCeEEEEEEEeCC-C
Confidence 3567899999997 34 43 2445776 45777 778998887642 22 35789999999998630 2
Q ss_pred CceeEeeeeEEEeccCC
Q psy11418 161 GELSIIPKKLTLLSPCL 177 (553)
Q Consensus 161 ge~~l~~~~i~il~~~~ 177 (553)
| .+.|++ ||.||.
T Consensus 74 g--~F~A~e--vLaKh~ 86 (94)
T 2kct_A 74 D--TFKART--LMTKCP 86 (94)
T ss_dssp S--EEEEEE--EEESSC
T ss_pred C--EEEEeE--EEEeCC
Confidence 2 355655 889995
No 204
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=25.60 E-value=54 Score=29.94 Aligned_cols=55 Identities=16% Similarity=0.084 Sum_probs=36.5
Q ss_pred EEEEEEEeeecCCCceEEEEEEe---CC----EEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRG---EG----LKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d---~~----~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.|.|+|.++...| +|++|.. +. ..++.++........ ...+....++.||.|.++
T Consensus 60 iV~G~V~~V~~~g---a~V~I~~v~~~~~~~~~~~~Gll~isei~~~-~~~~~~~~~~~GD~V~ak 121 (179)
T 3m7n_A 60 VVLGRVVDLRNSI---ALIEVSSKKGENRGPSNRGIGILHVSNVDEG-YVKEISEAVGYLDILKAR 121 (179)
T ss_dssp EEEEEEEEECSSE---EEEEEEEETTCCSCCTTCEEEEEEGGGTTSS-CCSSGGGTCCTTCEEEEE
T ss_pred EEEEEEEEEeCCc---EEEEEccccCcccccccCeeEEEEHHHcCcc-hhhCHhhcCCCCCEEEEE
Confidence 4789999998776 7999976 11 157777776543111 111234568999999875
No 205
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=25.60 E-value=73 Score=25.87 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=26.9
Q ss_pred ccCCccEEEEEcccccCCCCceeEEeeeEEEEecc
Q psy11418 356 KIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPC 390 (553)
Q Consensus 356 ~L~~gs~V~V~G~v~~~~~g~~El~~~~i~vl~~~ 390 (553)
.+.+||+|.|.|.+. ...+.+||.+.+...+.+|
T Consensus 63 ~i~~Gdvv~i~g~v~-~~~~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 63 EVKKGDIAEVSGYVK-QGYSGLEISVDNIGIIEKS 96 (97)
T ss_dssp CCCTTCEEEEEEEEE-EC--CEEEEEEEEEEEECC
T ss_pred ccCCCCEEEEEEEEE-EcCCeEEEEECCCcEEEEC
Confidence 699999999999763 3356899999999888765
No 206
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A
Probab=23.79 E-value=1e+02 Score=26.44 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhCCcEEeeCceeeccCC-CcceeeeeecCCCCCcceeEEeChhHHH
Q psy11418 427 VRAQIIAYVRRYLDSLGFLEVETPMMNMIAG-GATAKPFVTHHNDLNMDLYMRIAPELYL 485 (553)
Q Consensus 427 ~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~-ga~~~~~~t~~~~~~~~~yL~~Spel~~ 485 (553)
.|..+++++.+|+.++|+ ||.|....+ ....+|.. . ..+-..-|-+||+-..
T Consensus 9 ~rPYLiRA~yeWi~DN~~----TP~l~Vda~~~~v~VP~~-~--v~dGqIVLNIsp~Av~ 61 (118)
T 1yfn_A 9 RRPYLLRAFYEWLLDNQL----TPHLVVDVTLPGVQVPME-Y--ARDGQIVLNIAPRAVG 61 (118)
T ss_dssp SHHHHHHHHHHHHHHTTC----CEEEEEETTSTTCBSCGG-G--CBTTEEEEECSGGGCE
T ss_pred CccHHHHHHHHHHHcCCC----cceEEEEcCCCCccCCHH-H--hcCCEEEEECChhhhc
Confidence 467789999999999999 999987763 33344443 0 1145778888886543
No 207
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B
Probab=22.05 E-value=1.1e+02 Score=25.91 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhCCcEEeeCceeeccCC-CcceeeeeecCCCCCcceeEEeChhHH
Q psy11418 427 VRAQIIAYVRRYLDSLGFLEVETPMMNMIAG-GATAKPFVTHHNDLNMDLYMRIAPELY 484 (553)
Q Consensus 427 ~Rs~i~~~iR~f~~~~~F~EV~TPiL~~~~~-ga~~~~~~t~~~~~~~~~yL~~Spel~ 484 (553)
.|-.+++++.+|+.++|+ ||.|..... ....+|.. . ..+-..-|-+||+-.
T Consensus 8 ~rPYLiRA~yeWi~DN~~----TP~l~Vda~~~~v~VP~~-~--v~dGqIvLNIsp~Av 59 (111)
T 1ou8_A 8 KRPYLLRAYYDWLVDNSF----TPYLVVDATYLGVNVPVE-Y--VKDGQIVLNLSASAT 59 (111)
T ss_dssp SHHHHHHHHHHHHHHTTC----CEEEEEETTSTTCBCCGG-G--CBTTEEEEECSTTTC
T ss_pred CccHHHHHHHHHHHhCCC----cceEEEEcCCCCCcCCHH-H--hcCCEEEEECChhhh
Confidence 367889999999999999 999987763 33344443 0 124467788887644
No 208
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=21.91 E-value=2.3e+02 Score=20.54 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=34.1
Q ss_pred EEEEEEEeeecCCCceEEEEEEeC-CEEEEEEEecccCCCHHHHHHHhccCCCCcEEEEE
Q psy11418 94 SVAGRVHAIRESGTKLMFYDLRGE-GLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVT 152 (553)
Q Consensus 94 ~v~Gri~~~R~~g~kl~Fi~l~d~-~~~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~ 152 (553)
.+.|+|..++..| ..+-+.|.-+ +..+-..+.... +. .-.|..|+-|.+.
T Consensus 8 ~l~g~V~~i~~~g-~~~~V~l~~~~g~~l~a~it~~s------~~--~l~L~~G~~V~a~ 58 (68)
T 1gut_A 8 QLKGKVVGLKKGV-VTAEVVLEIAGGNKITSIISLDS------VE--ELGVKEGAELTAV 58 (68)
T ss_dssp EEEEEEEEEEECS-SEEEEEEEETTSCEEEEEEEHHH------HH--HHTCCTTCEEEEE
T ss_pred EEEEEEEEEEeCC-ceEEEEEEeCCCCEEEEEeCHHH------HH--HCCCCCCCEEEEE
Confidence 4899999999888 5666777643 445666665432 21 2358999999874
No 209
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=21.60 E-value=46 Score=35.92 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHH-HHHhCCcEEeeCceeeccC
Q psy11418 423 HKFIVRAQIIAYVRR-YLDSLGFLEVETPMMNMIA 456 (553)
Q Consensus 423 ~~l~~Rs~i~~~iR~-f~~~~~F~EV~TPiL~~~~ 456 (553)
.-.+++..+.+.+++ ++.+.||.||.||+|.+..
T Consensus 229 ~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~e 263 (522)
T 2cja_A 229 QSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWE 263 (522)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHH
Confidence 346788899999996 5889999999999999876
No 210
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=20.98 E-value=60 Score=34.28 Aligned_cols=33 Identities=6% Similarity=-0.071 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHH--HhCCcEEeeCceeeccC
Q psy11418 424 KFIVRAQIIAYVRRYL--DSLGFLEVETPMMNMIA 456 (553)
Q Consensus 424 ~l~~Rs~i~~~iR~f~--~~~~F~EV~TPiL~~~~ 456 (553)
-.+++..|.+.+++.+ .+.|+.||+||+|.+..
T Consensus 61 G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~ 95 (454)
T 1g5h_A 61 GVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGS 95 (454)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChh
Confidence 4678899999888774 58999999999998776
No 211
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=20.19 E-value=1.6e+02 Score=24.30 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=29.2
Q ss_pred EEEEEEecccCCCHHHHHHHhccCCCCcEEEEEeeccc-c-cCCceeEeeeeEE
Q psy11418 120 KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGK-T-KKGELSIIPKKLT 171 (553)
Q Consensus 120 ~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~v~G~~~~-t-~~ge~~l~~~~i~ 171 (553)
.|+|++..+. . +....+..|+.|.|+|.+.. + +...+-++++.++
T Consensus 49 ~i~vv~wGk~----A---E~~~~~~kGs~V~VeGrL~trs~~s~~lvlhi~~~~ 95 (101)
T 3en2_A 49 SIEALGAGKM----A---SVLDRIAPGTVLECVGFLARKHRSSKALVFHISGLE 95 (101)
T ss_dssp EEEEEEETHH----H---HHHTTSCTTCEEEEEEEEEECC----CEEEEEEEEE
T ss_pred EEEEEEEhHH----H---HHHhhcCCCCEEEEEEEEEeCcCCCCeeEEEEeccc
Confidence 3888887653 2 22345899999999999973 3 2345666666654
Done!