RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11418
(553 letters)
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding,
cytoplasm, ligase, nucleotide-binding, phosphoprotein,
polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Length = 521
Score = 512 bits (1321), Expect = e-178
Identities = 201/287 (70%), Positives = 248/287 (86%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVH 100
++++++RS A+ Q+K G PYPHKF V SL DFI+KYS L L ++TL VAGR+H
Sbjct: 6 NQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIH 65
Query: 101 AIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK 160
A R SG KL+FYDLRGEG+K+QVMAN+R Y+SEEEF K++RGDIIGV G+PGKTKK
Sbjct: 66 AKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKK 125
Query: 161 GELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAY 220
GELSIIP ++TLLSPCLHMLPH+HFG+KDKETR+RQRYLDL++N+ +R KFI+R++II Y
Sbjct: 126 GELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITY 185
Query: 221 VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLD 280
+R +LD LGFLE+ETPMMN+I GGA AKPF+T+HN+L+M+LYMRIAPELY KMLVVGG+D
Sbjct: 186 IRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGID 245
Query: 281 RVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
RVYE+GRQFRNEGIDLTHNPEFTTCEFYMAYADY+DLM +TE ++SG
Sbjct: 246 RVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSG 292
Score = 315 bits (810), Expect = e-101
Identities = 144/271 (53%), Positives = 177/271 (65%), Gaps = 59/271 (21%)
Query: 337 VMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPH 396
VMAN+R Y+SEEEF K++RGDIIGV G+PGKTKKGELSIIP ++TLLSPCLHMLPH
Sbjct: 88 VMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPH 147
Query: 397 MHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456
+HFG+KDKETR+RQRYLDL++N+ +R KFI+R++II Y+R +LD LGFLE+ETPMMN+I
Sbjct: 148 LHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIP 207
Query: 457 GGATAKPFVTHHNDLNMDLYMRIAP----------------------------------- 481
GGA AKPF+T+HN+L+M+LYMRIAP
Sbjct: 208 GGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEF 267
Query: 482 ---ELY--------------------LKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRL 518
E Y +K GSYKVTYHPDGPE G ++DFTPPFRR+
Sbjct: 268 TTCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPE-GQAYDVDFTPPFRRI 326
Query: 519 HMFPALEAALGVKLPNPTEFDTPEANKFLSD 549
+M LE ALG+KLP F+T E K L D
Sbjct: 327 NMVEELEKALGMKLPETNLFETEETRKILDD 357
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein
biosynthesis, AMI tRNA synthetase, ATP-binding,
magnesium; HET: B4P LYN; 1.80A {Geobacillus
stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Length = 493
Score = 387 bits (996), Expect = e-130
Identities = 133/287 (46%), Positives = 184/287 (64%), Gaps = 4/287 (1%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLE-NVTLSVAGRV 99
++ R+R +++++E G P+ +F T E+ E Y DL ++ E + ++VAGR+
Sbjct: 6 NDQLRVRREKLKKIEELGVDPFGKRFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRI 65
Query: 100 HAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK 159
R G K F ++ +IQ+ + E+++ GDI+GV G+ KTK
Sbjct: 66 MTKRGMG-KAGFAHIQDVTGQIQIYVR-QDDVGEQQYE-LFKISDLGDIVGVRGTMFKTK 122
Query: 160 KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIA 219
GELSI L+ L LP + G+KD E R+RQRYLDL++N + FI R+ II
Sbjct: 123 VGELSIKVSSYEFLTKALRPLPEKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSLIIQ 182
Query: 220 YVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL 279
+RRYLDS G+LEVETPMM+ +AGGA A+PF+THHN L+M LYMRIA EL+LK L+VGGL
Sbjct: 183 SMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELHLKRLIVGGL 242
Query: 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
++VYE+GR FRNEGI HNPEFT E Y AYAD+ D+M LTE+LI+
Sbjct: 243 EKVYEIGRVFRNEGISTRHNPEFTMLELYEAYADFRDIMKLTENLIA 289
Score = 221 bits (567), Expect = 4e-66
Identities = 75/139 (53%), Positives = 94/139 (67%)
Query: 348 EEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETR 407
E+ GDI+GV G+ KTK GELSI L+ L LP + G+KD E R
Sbjct: 97 EQQYELFKISDLGDIVGVRGTMFKTKVGELSIKVSSYEFLTKALRPLPEKYHGLKDIEQR 156
Query: 408 FRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTH 467
+RQRYLDL++N + FI R+ II +RRYLDS G+LEVETPMM+ +AGGA A+PF+TH
Sbjct: 157 YRQRYLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITH 216
Query: 468 HNDLNMDLYMRIAPELYLK 486
HN L+M LYMRIA EL+LK
Sbjct: 217 HNALDMTLYMRIAIELHLK 235
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute
of allergy AN infectious diseases; HET: LYS; 2.40A
{Burkholderia thailandensis}
Length = 529
Score = 385 bits (992), Expect = e-128
Identities = 123/327 (37%), Positives = 174/327 (53%), Gaps = 9/327 (2%)
Query: 1 MINERIRHLPNLSGAENSQQHTTAQTVTHLNTNYTQQCLTSEFFRLRSAAVEQMKEQGPH 60
M + H+ L E Q + T ++ R + +++QG
Sbjct: 1 MAHHHHHHMGTL---EAQTQGPGSMTEPIQPQAAVAADE-NQIVAERRDKLRALRDQGI- 55
Query: 61 PYPHKFTVTSSLEDFIEKYSDLPDAQVLE-NVTLSVAGRVHAIRESGTKLMFYDLRGEGL 119
YP+ F T D Y+D + ++ +++AGR+ R G K F ++
Sbjct: 56 AYPNDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMG-KASFATVQDGSG 114
Query: 120 KIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHM 179
+IQ E + K GDI+ G +T KGELS+ +L LL+ L
Sbjct: 115 QIQFFVT-PADVGAETYD-AFKKWDLGDIVAARGVLFRTNKGELSVKCTQLRLLAKALRP 172
Query: 180 LPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMN 239
LP G+ D+ETR+RQRY+DL++ R F R + IA +R+++ F+EVETPM++
Sbjct: 173 LPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLH 232
Query: 240 MIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHN 299
I GGA AKPFVTHHN L+M++++RIAPELYLK L+VGG +RV+E+ R FRNEG+ HN
Sbjct: 233 PIPGGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVSPRHN 292
Query: 300 PEFTTCEFYMAYADYNDLMHLTEDLIS 326
PEFT EFY AY DY LM TE LI
Sbjct: 293 PEFTMMEFYAAYTDYRWLMDFTERLIR 319
Score = 222 bits (567), Expect = 9e-66
Identities = 66/139 (47%), Positives = 90/139 (64%)
Query: 348 EEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETR 407
E K GDI+ G +T KGELS+ +L LL+ L LP G+ D+ETR
Sbjct: 127 AETYDAFKKWDLGDIVAARGVLFRTNKGELSVKCTQLRLLAKALRPLPDKFHGLADQETR 186
Query: 408 FRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTH 467
+RQRY+DL++ R F R + IA +R+++ F+EVETPM++ I GGA AKPFVTH
Sbjct: 187 YRQRYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLHPIPGGAAAKPFVTH 246
Query: 468 HNDLNMDLYMRIAPELYLK 486
HN L+M++++RIAPELYLK
Sbjct: 247 HNALDMEMFLRIAPELYLK 265
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA
synthetase, protein biosynthesis; HET: LYS; 2.12A
{Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A*
1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Length = 504
Score = 384 bits (988), Expect = e-128
Identities = 129/287 (44%), Positives = 186/287 (64%), Gaps = 4/287 (1%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLE-NVTLSVAGRV 99
++ R R + +++QG +P+ F + + E++ + ++ N+ +SVAGR+
Sbjct: 15 NDELRNRREKLAALRQQGV-AFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRM 73
Query: 100 HAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK 159
R G K F L+ G +IQ+ R E + K GDIIG G+ KT+
Sbjct: 74 MTRRIMG-KASFVTLQDVGGRIQLYVA-RDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQ 131
Query: 160 KGELSIIPKKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIA 219
GELSI +L LL+ L LP G++D+E R+RQRYLDL+ N++ R F+VR++I+A
Sbjct: 132 TGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKILA 191
Query: 220 YVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGL 279
+R+++ + GF+EVETPMM +I GGA+A+PF+THHN L++D+Y+RIAPELYLK LVVGG
Sbjct: 192 AIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGF 251
Query: 280 DRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLIS 326
+RV+E+ R FRNEGI + HNPEFT E YMAYADY+DL+ LTE L
Sbjct: 252 ERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFR 298
Score = 223 bits (570), Expect = 2e-66
Identities = 72/140 (51%), Positives = 102/140 (72%)
Query: 347 EEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDKET 406
E + K GDIIG G+ KT+ GELSI +L LL+ L LP G++D+E
Sbjct: 105 EGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEV 164
Query: 407 RFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVT 466
R+RQRYLDL+ N++ R F+VR++I+A +R+++ + GF+EVETPMM +I GGA+A+PF+T
Sbjct: 165 RYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFIT 224
Query: 467 HHNDLNMDLYMRIAPELYLK 486
HHN L++D+Y+RIAPELYLK
Sbjct: 225 HHNALDLDMYLRIAPELYLK 244
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase
paralog, translation, lysyl- synthetase, lysyladenylate
analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A*
3g1z_A*
Length = 345
Score = 223 bits (572), Expect = 2e-68
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 208 RHKFIVRAQIIAYVRRYLDSLGFLEVETPMMN-MIAGGATAKPFVTHH----NDLNMDLY 262
+ RA I+A +RR+ G LEVETP M+ PF T + M+L+
Sbjct: 33 IPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLW 92
Query: 263 MRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTE 322
+ +PE ++K L+V G V+++ R FRNE + HNPEFT E+Y + D LM+ +
Sbjct: 93 LMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYDMYRLMNEVD 152
Query: 323 DLIS 326
DL+
Sbjct: 153 DLLQ 156
Score = 118 bits (298), Expect = 2e-29
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 422 RHKFIVRAQIIAYVRRYLDSLGFLEVETPMMN-MIAGGATAKPFVTHH----NDLNMDLY 476
+ RA I+A +RR+ G LEVETP M+ PF T + M+L+
Sbjct: 33 IPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLW 92
Query: 477 MRIAPELYLK 486
+ +PE ++K
Sbjct: 93 LMTSPEYHMK 102
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 118 bits (298), Expect = 8e-29
Identities = 65/284 (22%), Positives = 106/284 (37%), Gaps = 50/284 (17%)
Query: 78 KYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLR-GEGLKIQVMANARMYQS-EEE 135
K+ DL +A+ + + RVH R+ G L F LR L IQ + A + +
Sbjct: 25 KFVDLDEAK-DSDKEVLFRARVHNTRQQGATLAFLTLRQQASL-IQGLVKANKEGTISKN 82
Query: 136 FASDLVKIKRGDIIGVTG-------SPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVK 188
+ I+ V G L I K+ +S LP ++
Sbjct: 83 MVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALP---ILLE 139
Query: 189 DK-----------------ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFL 231
D +TR R +DL + F ++A + R YL + F
Sbjct: 140 DASRSEAEAEAAGLPVVNLDTRLDYRVIDLR-TVTNQAIFRIQAGVCELFREYLATKKFT 198
Query: 232 EVETPMMNMIA--GGATAKPFVTHHNDLNMDLYMRIA-----PELYLKMLVVGGLDRVYE 284
EV TP + GG++ F + + A P+ + L+V +RVYE
Sbjct: 199 EVHTPKLLGAPSEGGSSV--F-------EVTYFKGKAYLAQSPQFNKQQLIVADFERVYE 249
Query: 285 VGRQFRNEGIDLT-HNPEFTTCEFYMAYAD-YNDLMHLTEDLIS 326
+G FR E + H EFT + MA+ + Y++++ +L
Sbjct: 250 IGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFV 293
Score = 58.1 bits (141), Expect = 4e-09
Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 30/151 (19%)
Query: 336 CVMANARMYQSEEEFASDLVKIKRGDIIGVTG-------SPGKTKKGELSIIPKKLTLLS 388
++ + + + I+ V G L I K+ +S
Sbjct: 69 GLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTIS 128
Query: 389 PCLHMLPHMHFGVKDK-----------------ETRFRQRYLDLMINERIRHKFIVRAQI 431
LP ++D +TR R +DL + F ++A +
Sbjct: 129 ETPEALP---ILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLR-TVTNQAIFRIQAGV 184
Query: 432 IAYVRRYLDSLGFLEVETPMMNMIA--GGAT 460
R YL + F EV TP + GG++
Sbjct: 185 CELFREYLATKKFTEVHTPKLLGAPSEGGSS 215
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 117 bits (295), Expect = 1e-28
Identities = 71/263 (26%), Positives = 116/263 (44%), Gaps = 39/263 (14%)
Query: 80 SDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLR-GEGLKIQVMANARMYQSEEEFAS 138
+D+ + V AG VH +R+ G F LR GL QV+ +
Sbjct: 8 ADVTPEYDGKEVI--WAGWVHLLRDLG-GKKFIILRDKTGL-GQVVVDK-----NSSAFG 58
Query: 139 DLVKIKRGDIIGVTG--SPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK-----E 191
++ + +I V G K + + +++TLLS LP V K +
Sbjct: 59 ISQELTQESVIQVRGIVKADKRAPRGIELHAEEITLLSKAKAPLP---LDVSGKVKADID 115
Query: 192 TRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKP 249
TR R+R LDL + ++ +++ + R L GF+E+ TP + A GGA
Sbjct: 116 TRLRERVLDLR-RQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQL-- 172
Query: 250 FVTHHNDLNMDLYMRIA-----PELYLKMLVVGGLDRVYEVGRQFRNEGIDLT-HNPEFT 303
F + + + A P+LY +++ G ++RV+EV +R E D H EF
Sbjct: 173 F-------PVIYFGKEAFLAQSPQLYKELM-AGVVERVFEVAPAWRAEESDTPFHLAEFI 224
Query: 304 TCEFYMAYADYNDLMHLTEDLIS 326
+ + MA+ADYND+M L E ++
Sbjct: 225 SMDVEMAFADYNDVMQLLEKILH 247
Score = 60.3 bits (147), Expect = 7e-10
Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 13/126 (10%)
Query: 344 YQSEEEFASDLVKIKRGDIIGVTG--SPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGV 401
++ + +I V G K + + +++TLLS LP V
Sbjct: 50 VDKNSSAFGISQELTQESVIQVRGIVKADKRAPRGIELHAEEITLLSKAKAPLP---LDV 106
Query: 402 KDK-----ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA 456
K +TR R+R LDL + ++ +++ + R L GF+E+ TP + A
Sbjct: 107 SGKVKADIDTRLRERVLDLR-RQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASA 165
Query: 457 --GGAT 460
GGA
Sbjct: 166 TEGGAQ 171
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 116 bits (293), Expect = 3e-28
Identities = 66/263 (25%), Positives = 117/263 (44%), Gaps = 34/263 (12%)
Query: 80 SDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASD 139
S++ + + V VAG V +++ G + F +R +Q+ A + + + E
Sbjct: 8 SEITEELNGQKVK--VAGWVWEVKDLG-GIKFLWIRDRDGIVQITAPKK--KVDPELFKL 62
Query: 140 LVKIKRGDIIGVTGSPGKT--KKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK-----ET 192
+ K++ D++ V G T K I+P+K+ +L+ LP K +T
Sbjct: 63 IPKLRSEDVVAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLP---LDPTGKVKAELDT 119
Query: 193 RFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGA--TAKPF 250
R R++DL + F +R+ + VR + GF+E+ TP +IA + F
Sbjct: 120 RLDNRFMDLR-RPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPK--IIATATEGGTELF 176
Query: 251 VTHHNDLNMDLYMRIA-----PELYLKMLVVGGLDRVYEVGRQFRNEGIDLT-HNPEFTT 304
M + A P+LY ++++ GLDRVYE+ FR E + T H E +
Sbjct: 177 -------PMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWS 229
Query: 305 CEFYMAY-ADYNDLMHLTEDLIS 326
+ MA+ D ++M E L++
Sbjct: 230 IDSEMAFIEDEEEVMSFLERLVA 252
Score = 60.3 bits (147), Expect = 7e-10
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 347 EEEFASDLVKIKRGDIIGVTGSPGKT--KKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK 404
+ E + K++ D++ V G T K I+P+K+ +L+ LP K
Sbjct: 56 DPELFKLIPKLRSEDVVAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLP---LDPTGK 112
Query: 405 -----ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGA 459
+TR R++DL + F +R+ + VR + GF+E+ TP I A
Sbjct: 113 VKAELDTRLDNRFMDLR-RPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTP---KIIATA 168
Query: 460 T 460
T
Sbjct: 169 T 169
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 104 bits (263), Expect = 2e-24
Identities = 68/264 (25%), Positives = 109/264 (41%), Gaps = 43/264 (16%)
Query: 78 KYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLR-GEGLKIQVMANARMYQSEEEF 136
DL + + G +H R+ G ++ F LR G+ +QV+
Sbjct: 4 LVRDLKA---HVGQEVELLGFLHWRRDLG-RIQFLLLRDRSGV-VQVVT----------- 47
Query: 137 ASDLVKIKRGDIIGVTG--SPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK---E 191
L + V G G L + K++ +LSP L P + + +
Sbjct: 48 -GGLKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPD 106
Query: 192 TRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKP 249
T RY+ L E+ R V+A ++ RRYLD F E+ TP + GG+
Sbjct: 107 TLLEYRYVTLR-GEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGL-- 163
Query: 250 FVTHHNDLNMDLYMRIA-----PELYLKMLVVGGLDRVYEVGRQFRNEGIDLT-HNPEFT 303
F +D + + A P+LY +++ VG +RVYEV +R E + H E+
Sbjct: 164 F-------GVDYFEKRAYLAQSPQLYKQIM-VGVFERVYEVAPVWRMEEHHTSRHLNEYL 215
Query: 304 TCEFYMAY-ADYNDLMHLTEDLIS 326
+ + M + AD DLM L E L++
Sbjct: 216 SLDVEMGFIADEEDLMRLEEALLA 239
Score = 56.0 bits (136), Expect = 2e-08
Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 8/117 (6%)
Query: 351 ASDLVKIKRGDIIGVTG--SPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKDK---E 405
L + V G G L + K++ +LSP L P + + +
Sbjct: 47 TGGLKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPD 106
Query: 406 TRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGAT 460
T RY+ L E+ R V+A ++ RRYLD F E+ TP + GG+
Sbjct: 107 TLLEYRYVTLR-GEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSG 162
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics, ligase; HET: 4AD; 1.45A {Pyrococcus
horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 93.4 bits (233), Expect = 2e-20
Identities = 58/262 (22%), Positives = 101/262 (38%), Gaps = 36/262 (13%)
Query: 80 SDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLR-GEGLKIQVMANARMYQSEEEFAS 138
++ + V +AG V+ G K +F +R G+ +Q + + EE
Sbjct: 8 QEVKPELDGKKVR--LAGWVYTNMRVG-KKIFLWIRDSTGI-VQAVVAKNV--VGEETFE 61
Query: 139 DLVKIKRGDIIGVTGS--PGKTKKGELSIIPKKLTLLSPC----LHMLPHMHFGVKDKET 192
K+ R + V G + G + +KL ++ + P E
Sbjct: 62 KAKKLGRESSVIVEGIVKADERAPGGAEVHVEKLEVIQAVSEFPIPENPEQA----SPEL 117
Query: 193 RFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAKPF 250
R+L + + V+ +I R +L G+ EV P++ A GGAT F
Sbjct: 118 LLDYRHLHIR-TPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATL--F 174
Query: 251 VTHHNDLNMDLYMRIA-----PELYLKMLVVGGLDRVYEVGRQFRNEGIDLT-HNPEFTT 304
+ + + A +LYL+ + GL++V+ + FR E H EF
Sbjct: 175 -------KLKYFDKYAYLSQSAQLYLEAAI-FGLEKVWSLTPSFRAEKSRTRRHLTEFWH 226
Query: 305 CEFYMAYADYNDLMHLTEDLIS 326
E A+ D D+M + E+L+S
Sbjct: 227 LELEAAWMDLWDIMKVEEELVS 248
Score = 46.4 bits (111), Expect = 2e-05
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 11/111 (9%)
Query: 348 EEFASDLVKIKRGDIIGVTGS--PGKTKKGELSIIPKKLTLLSPC----LHMLPHMHFGV 401
EE K+ R + V G + G + +KL ++ + P
Sbjct: 57 EETFEKAKKLGRESSVIVEGIVKADERAPGGAEVHVEKLEVIQAVSEFPIPENPEQA--- 113
Query: 402 KDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMM 452
E R+L + + V+ +I R +L G+ EV P++
Sbjct: 114 -SPELLLDYRHLHIR-TPKASAIMKVKETLIMAAREWLLKDGWHEVFPPIL 162
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme,
flexible domains, ligase; 2.01A {Thermus thermophilus}
SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Length = 580
Score = 92.9 bits (232), Expect = 4e-20
Identities = 70/273 (25%), Positives = 123/273 (45%), Gaps = 51/273 (18%)
Query: 81 DLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLR-GEGLKIQVMANARMYQSEEEFASD 139
L + V E V L G V+ R+ G L+F DLR EGL +Q++A+ +
Sbjct: 9 SLRETHVGEEVVL--EGWVNRRRDLG-GLIFLDLRDREGL-VQLVAH-----PASPAYAT 59
Query: 140 LVKIKRGDIIGVTGS----PGKTKK---GELSIIPKKLTLLSPC------LHMLPHMHFG 186
+++ ++ G P + G + + L +L+ +
Sbjct: 60 AERVRPEWVVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEE 119
Query: 187 VK-DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGA 245
+ +E R + RYLDL R++ +R ++I + +LD GF++VETP + +
Sbjct: 120 KEASEELRLKYRYLDLR-RRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFL----TKS 174
Query: 246 T---AKPFV----THHNDLNMDLYMRIA----PELYLKMLVVGGLDRVYEVGRQFRNEGI 294
T A+ F+ Y A P+L+ +ML+V GLDR +++ R FR+E
Sbjct: 175 TPEGARDFLVPYRHEPG----LFY---ALPQSPQLFKQMLMVAGLDRYFQIARCFRDE-- 225
Query: 295 DLTHN--PEFTTCEFYMAYADYNDLMHLTEDLI 325
DL + P+FT + M++ + D++ L E L+
Sbjct: 226 DLRADRQPDFTQLDLEMSFVEVEDVLELNERLM 258
Score = 64.8 bits (159), Expect = 3e-11
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 375 GELSIIPKKLTLLSPC------LHMLPHMHFGVK-DKETRFRQRYLDLMINERIRHKFIV 427
G + + L +L+ + + +E R + RYLDL R++ +
Sbjct: 88 GRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLR-RRRMQENLRL 146
Query: 428 RAQIIAYVRRYLDSLGFLEVETPMM 452
R ++I + +LD GF++VETP +
Sbjct: 147 RHRVIKAIWDFLDREGFVQVETPFL 171
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex;
HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia
coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A*
1eqr_A*
Length = 585
Score = 92.5 bits (231), Expect = 6e-20
Identities = 77/275 (28%), Positives = 126/275 (45%), Gaps = 60/275 (21%)
Query: 81 DLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLR-GEGLKIQVMANARMYQSEEEF--A 137
L + V + VTL G V+ R+ G L+F D+R EG+ +QV + + A
Sbjct: 8 QLRLSHVGQQVTL--CGWVNRRRDLG-SLIFIDMRDREGI-VQVFFDP---DRADALKLA 60
Query: 138 SDLVKIKRGDIIGVTGS----PGKT-----KKGELSIIPKKLTLLSPCLHMLPHMHFGVK 188
S+L + I VTG+ K GE+ ++ LT+++ +LP
Sbjct: 61 SEL---RNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD-VLP---LDSN 113
Query: 189 DK---ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGA 245
E R + RYLDL + + RA+I + VRR++D GFL++ETPM+ A
Sbjct: 114 HVNTEEARLKYRYLDLR-RPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPML----TKA 168
Query: 246 T---AKPFV----THHNDLNMDLYMRIA----PELYLKMLVVGGLDRVYEVGRQFRNEGI 294
T A+ ++ H Y A P+L+ ++L++ G DR Y++ + FR+E
Sbjct: 169 TPEGARDYLVPSRVHKG----KFY---ALPQSPQLFKQLLMMSGFDRYYQIVKCFRDE-- 219
Query: 295 DLTHN--PEFTT--CEFYMAYADYNDLMHLTEDLI 325
DL + PEFT E ++ + + E L+
Sbjct: 220 DLRADRQPEFTQIDVE--TSFMTAPQVREVMEALV 252
Score = 66.4 bits (163), Expect = 1e-11
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 375 GELSIIPKKLTLLSPCLHMLPHMHFGVKDK---ETRFRQRYLDLMINERIRHKFIVRAQI 431
GE+ ++ LT+++ +LP E R + RYLDL + + RA+I
Sbjct: 90 GEIEVLASSLTIINRAD-VLP---LDSNHVNTEEARLKYRYLDLR-RPEMAQRLKTRAKI 144
Query: 432 IAYVRRYLDSLGFLEVETPMM 452
+ VRR++D GFL++ETPM+
Sbjct: 145 TSLVRRFMDDHGFLDIETPML 165
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 89.2 bits (222), Expect = 3e-19
Identities = 52/290 (17%), Positives = 104/290 (35%), Gaps = 35/290 (12%)
Query: 84 DAQVLENVTLSVAGRVHAIRESGTKLMFYDLR-GEGLKIQVMANARMYQSEEEFASDLVK 142
D N + + G +H +R G LMF+ LR G G +QV+ ++ Q+ D +
Sbjct: 5 DLVKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF-LQVLLMDKLCQTY-----DALT 58
Query: 143 IKRGDIIGVTG----SP-GKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKD--KETRFR 195
+ + + G P GK +I ++ + ++ +
Sbjct: 59 VNTECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIGNA-PPGGIDNVLNEEASVDKMLD 117
Query: 196 QRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHN 255
R+L + +RA +R + + G++EV P + + F
Sbjct: 118 NRHLVIRGE-NAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLF----- 171
Query: 256 DLNMDLYMRIA-----PELYLKMLVVGGLDRVYEVGRQFRNEGIDLT-HNPEFTTCEFYM 309
N+D + + +LYL+ + L V+ + + +R E H E+ E
Sbjct: 172 --NLDYFGEQSFLTQSSQLYLETCI-PTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAEC 228
Query: 310 AYADYNDLMHLTEDLISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKR 359
+ +DLM E+L+ + ++A+ + E +R
Sbjct: 229 PFITLDDLMEKIEELVCDTVDR-----LLADEEAKKLLEHINPKFQPPER 273
Score = 39.9 bits (94), Expect = 0.002
Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 9/107 (8%)
Query: 353 DLVKIKRGDIIGVTG----SP-GKTKKGELSIIPKKLTLLSPCLHMLPHMHFGVKD--KE 405
D + + + + G P GK +I ++ + ++ +
Sbjct: 55 DALTVNTECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIGNA-PPGGIDNVLNEEASVD 113
Query: 406 TRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMM 452
R+L + +RA +R + + G++EV P +
Sbjct: 114 KMLDNRHLVIRGE-NAAALLRLRAAATRAMREHFYNAGYVEVAPPTL 159
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 88.1 bits (219), Expect = 1e-18
Identities = 48/260 (18%), Positives = 100/260 (38%), Gaps = 31/260 (11%)
Query: 84 DAQVLENVTLSVAGRVHAIRESGTKLMFYDLR-GEGLKIQVMANARMYQSEEEFASDLVK 142
DA LE ++ G + IR++ L+F +LR G G Q + E +
Sbjct: 24 DAAGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGY-CQCVIFG----KELCEPEKVKL 78
Query: 143 IKRGDIIGVTG----SPGKTKKGELS------IIPKKLTLLSPCLHMLPHMHFGVKDKET 192
+ R + +TG GK E++ + + ++ L ++
Sbjct: 79 LTRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQ 138
Query: 193 RFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVT 252
+ + R++ + +E + +R++I Y R+Y F E++ P + + F
Sbjct: 139 KMQNRHIVIR-SEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLF-- 195
Query: 253 HHNDLNMDLYMRIA-----PELYLKMLVVGGLDRVYEVGRQFRNEGIDLT-HNPEFTTCE 306
+ + A +LYL+ ++ L + + + +R E H E+ E
Sbjct: 196 -----KLQYFNEPAYLTQSSQLYLESVI-ASLGKSFCMLSSYRAEQSRTVRHLAEYLHLE 249
Query: 307 FYMAYADYNDLMHLTEDLIS 326
+ + + DL++ EDL+
Sbjct: 250 AELPFISFEDLLNHLEDLVC 269
Score = 38.8 bits (91), Expect = 0.004
Identities = 20/127 (15%), Positives = 50/127 (39%), Gaps = 16/127 (12%)
Query: 336 CVMANARMYQSEEEFASDLVKIKRGDIIGVTG----SPGKTKKGELS------IIPKKLT 385
CV+ + + E+ + + R + +TG GK E++ + +
Sbjct: 63 CVIFGKELCEPEK-----VKLLTRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWK 117
Query: 386 LLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFL 445
++ L ++ + + R++ + +E + +R++I Y R+Y F
Sbjct: 118 VIGESPIDLENIINKDSSIPQKMQNRHIVIR-SEHTQQVLQLRSEIQWYFRKYYHDNHFT 176
Query: 446 EVETPMM 452
E++ P +
Sbjct: 177 EIQPPTI 183
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, LI nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 79.5 bits (196), Expect = 7e-16
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 19/145 (13%)
Query: 191 ETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--GGATAK 248
+TR R LDL F +++ R +L S F+E+ TP + + GG+
Sbjct: 225 DTRLDNRMLDLR-TVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNI- 282
Query: 249 PFVTHHNDLNMDLYMRIA-----PELYLKMLVVGGLDRVYEVGRQFRNEGIDLT-HNPEF 302
F + + R A P+LY +M ++G +V+EVG FR E + H EF
Sbjct: 283 -F-------EVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEF 334
Query: 303 TTCEFYMAYAD-YNDLMHLTEDLIS 326
+ M + Y++ + + E L +
Sbjct: 335 EGLDIEMEIVENYHECIDVMEKLFT 359
Score = 45.2 bits (107), Expect = 5e-05
Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 4/131 (3%)
Query: 322 EDLISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIP 381
+ + P + + S + + + I +L+ P
Sbjct: 145 TSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGK---DLTKRP 201
Query: 382 KKLTLLSPCLHMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDS 441
K + ++TR R LDL F +++ R +L S
Sbjct: 202 LKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLR-TVTNIAIFRIQSACCGLFREFLTS 260
Query: 442 LGFLEVETPMM 452
F+E+ TP +
Sbjct: 261 QKFVEIHTPKL 271
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 70.7 bits (174), Expect = 1e-13
Identities = 21/138 (15%), Positives = 54/138 (39%), Gaps = 9/138 (6%)
Query: 197 RYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPM----MNMIAGGATAKPFVT 252
++++ I ++ +I+ Y+ + GF + + + + +
Sbjct: 2 NAVEIISR-EISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEP 60
Query: 253 HHNDL-NMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLT---HNPEFTTCEFY 308
++ + + + + L+ ++ + GL +++ + R E H EFT +F
Sbjct: 61 AEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFE 120
Query: 309 MAYADYNDLMHLTEDLIS 326
+ A D+M L E L+
Sbjct: 121 VERAKMEDIMRLIERLVY 138
Score = 32.2 bits (74), Expect = 0.39
Identities = 5/41 (12%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 411 RYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPM 451
++++ I ++ +I+ Y+ + GF + +
Sbjct: 2 NAVEIISR-EISPTLDIQTKILEYMTDFFVKEGFKWLLPVI 41
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.9 bits (139), Expect = 7e-09
Identities = 57/435 (13%), Positives = 126/435 (28%), Gaps = 119/435 (27%)
Query: 28 THLNTNYTQQCLTSEFFRLRSAAVEQ-----MKEQGPHPYPHKFTV------TSSLEDFI 76
++ N+T + S +LR +++ +K PY + V + F
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS---KPYENCLLVLLNVQNAKAWNAF- 262
Query: 77 EKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEF 136
+L ++L +T + + T + D L + +
Sbjct: 263 ----NL-SCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--------EVKSLL 307
Query: 137 ASDLVKIKRGDI--IGVTGSP------GKTKKGELSII--------PKKLTLLSPCLHML 180
+ + D+ +T +P ++ + L+ K T++ L++L
Sbjct: 308 LK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 181 PHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSL-GFLEVETPM-- 237
+ +R+ + L + F A I + L + + M
Sbjct: 367 ---------EPAEYRKMFDRLSV-------FPPSAHIPTIL---LSLIWFDVIKSDVMVV 407
Query: 238 MN------MIAGGATAKPFVTHHNDLNMDLYMRIAPELYL-KMLVVGGLDRVYEVGRQFR 290
+N ++ K + ++L +++ E L + +V D Y + + F
Sbjct: 408 VNKLHKYSLVEKQ--PKESTISIPSIYLELKVKLENEYALHRSIV----DH-YNIPKTFD 460
Query: 291 NEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDRNRPCVMANARMYQSEEEF 350
++ DL ++ + H + N + F
Sbjct: 461 SD--DLIPPYLDQYFYSHIGH-------H------------------LKNIEHPERMTLF 493
Query: 351 AS---DL----VKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPH--MHFGV 401
D KI+ +L + P L + + F
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 402 KDKETRFRQRYLDLM 416
K +E +Y DL+
Sbjct: 554 KIEENLICSKYTDLL 568
Score = 46.8 bits (110), Expect = 2e-05
Identities = 77/564 (13%), Positives = 158/564 (28%), Gaps = 169/564 (29%)
Query: 4 ERIRHLPNLSGAENSQQHTTAQTV-THLNTNYTQQCLTSEFFRLRSAAVEQMKEQGPHPY 62
L + Q+ + V L NY +F + +K + P
Sbjct: 62 SGTLRL--FWTLLSKQEEMVQKFVEEVLRINY-------KFL------MSPIKTEQRQP- 105
Query: 63 PHKFTVTSSLEDFIEKYSDLP-DAQVLENVTLSVAGRVHAIRE------SGTKLMFYDLR 115
+ +IE+ L D QV +S +R+ ++ +
Sbjct: 106 ------SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 116 GEGLKIQVMAN--ARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLL 173
G G K +A Y+ + + I + + + L ++ K L +
Sbjct: 160 GSG-K-TWVALDVCLSYKVQCKMD--------FKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 174 SPCLHMLPHMHFG-------VKDKETRF--RQRYLD-LMI-----NERIRHKFIVRAQII 218
P ++ + R + Y + L++ N + + F + +I+
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 219 AYVR--RYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIA-------PEL 269
R + D L ++ + T D L ++ P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTP--------DEVKSLLLKYLDCRPQDLPRE 321
Query: 270 YLKM--LVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISG 327
L + + R+ T + + + + + L + E ++
Sbjct: 322 VLTTNPRRLSI------IAESIRDG---------LATWDNW-KHVNCDKLTTIIESSLNV 365
Query: 328 ------RK---------EDRNRP----CVMANARMYQSEEEFASDLVK---IKRGDIIGV 365
RK + P ++ + + L K +++
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 366 TGSPG-----KTK---KGEL--SII-----PKKL---TLLSPCL------HMLPHM-HFG 400
P K K + L SI+ PK L+ P L H+ H+ +
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 401 VKDKETRFRQRYLDL-MINERIRH----------------------KFIVRAQIIAYVRR 437
++ T FR +LD + ++IRH +I Y R
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD-NDPKYERL 544
Query: 438 YLDSLGFLE------VETPMMNMI 455
L FL + + +++
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLL 568
Score = 45.6 bits (107), Expect = 4e-05
Identities = 77/559 (13%), Positives = 158/559 (28%), Gaps = 199/559 (35%)
Query: 56 EQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGR--VHAI-----RESGTK 108
E G H Y +K ++ + F++ + D + ++++ S+ + + I SGT
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVD---NF-DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 109 LMFYDLR-----------GEGL---------KIQVMANA-------------RMYQSEEE 135
+F+ L E L I+ R+Y +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 136 FASD--------------LVKIKRGDII---GVTGSPGKT-------------------- 158
FA L++++ + GV GS GKT
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS-GKTWVALDVCLSYKVQCKMDFKI 184
Query: 159 ---------KKGELSIIPKKL-TLLSPCLHMLPHMHFG-------VKDKETRF--RQRYL 199
+ + +KL + P ++ + R + Y
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 200 D-LMI-----NERIRHKFIVRAQIIAYVR--RYLDSLGFLEVETPMMNMIAGGATAKPFV 251
+ L++ N + + F + +I+ R + D L ++ + T
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP---- 300
Query: 252 THHNDLNMDLYMRIA-------PELYLKM--LVVGGLDRVYEVGRQFRNEGIDLTHNPEF 302
D L ++ P L + + R+
Sbjct: 301 ----DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI------IAESIRD---------GL 341
Query: 303 TTCEFYMAYADYNDLMHLTEDLISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDI 362
T + + + + + L + E ++ + R +M+ F I
Sbjct: 342 ATWDNW-KHVNCDKLTTIIESSLNVLEPAEYR-------KMFDRLSVFPPS-AHI----- 387
Query: 363 IGVTGSPGKT--------KKGELSIIPKKLTLLSPCLHMLPHMHFGVKD-KETRFR--QR 411
P K ++ ++ KL S ++ K KE+
Sbjct: 388 ------PTILLSLIWFDVIKSDVMVVVNKLHKYS----LV------EKQPKESTISIPSI 431
Query: 412 YLDLMI---NERIRHKFIVRAQIIAY-VRRYLDSLGFLEVETPMMNMIAGGATAKPFVTH 467
YL+L + NE H+ IV Y + + DS + + + H
Sbjct: 432 YLELKVKLENEYALHRSIVD----HYNIPKTFDSDDLI--PPYLDQYFYS------HIGH 479
Query: 468 H-NDLNMDLYMRIAPELYL 485
H ++ M + ++L
Sbjct: 480 HLKNIEHPERMTLFRMVFL 498
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 50.3 bits (120), Expect = 6e-07
Identities = 24/153 (15%), Positives = 55/153 (35%), Gaps = 20/153 (13%)
Query: 187 VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA---- 242
++ + R++ L + E + ++ + R+ GFLE+++P++ +
Sbjct: 55 LESELLSRRKKDLQQIYAEEREN---YLGKLEREITRFFVDRGFLEIKSPILIPLEYIER 111
Query: 243 -GGATAKPFVTHHNDLNMDLYMRIAPE--------LYLKMLVVGGLDRVYEVGRQFRNEG 293
G ++ + +R P L + +++E+G +R E
Sbjct: 112 MGIDNDTELSKQIFRVDKNFCLR--PMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKES 169
Query: 294 IDLTHNPEFTTCEFYMAYADYN--DLMHLTEDL 324
H EFT F+ + +L + D
Sbjct: 170 DGKEHLEEFTMLVFWQMGSGCTRENLESIITDF 202
Score = 31.4 bits (71), Expect = 0.71
Identities = 9/52 (17%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 401 VKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMM 452
++ + R++ L + E + ++ + R+ GFLE+++P++
Sbjct: 55 LESELLSRRKKDLQQIYAEEREN---YLGKLEREITRFFVDRGFLEIKSPIL 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 1e-05
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 48/128 (37%)
Query: 20 QHTTAQTVTH----LN-TNYTQQCLTSEFFRLRSAAVEQMKEQGPHPYP-----HKFTVT 69
+H+T+ T L+ T +TQ L + AA E +K +G P H
Sbjct: 1712 EHSTSYTFRSEKGLLSATQFTQPAL----TLMEKAAFEDLKSKGLIPADATFAGH----- 1762
Query: 70 SSL-EDFIEKYSDLPDAQVLENVTLSVAGRVHAIR-ESGTKLMFYDLRGEGLKIQV---- 123
SL E Y+ A S+A + ES +++FY RG +++ V
Sbjct: 1763 -SLGE-----YA----ALA------SLAD---VMSIESLVEVVFY--RGMTMQVAVPRDE 1801
Query: 124 --MANARM 129
+N M
Sbjct: 1802 LGRSNYGM 1809
Score = 43.9 bits (103), Expect = 2e-04
Identities = 56/347 (16%), Positives = 101/347 (29%), Gaps = 126/347 (36%)
Query: 34 Y-TQQCLTSEFFRLRSAAVEQMKEQGPHP---YPHKFTVTSSLEDFIEKYSDLPDAQVLE 89
Y T L + + + + ++ + ++ +++E S+ PD L
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL----NILEWLENPSNTPDKDYLL 232
Query: 90 NVTLS-------------VAGRVHAIRESGTKLMFYDLRG-----EGLKIQVMANA-RMY 130
++ +S V ++ + L+G +GL V A A
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFT---PGELRSYLKGATGHSQGL---VTAVAIAET 286
Query: 131 QSEEEFASDLVK-IKRGDIIGVTGS---PGKTKKGELSIIPKKL--------TLLSPCLH 178
S E F + K I IGV P S+ P L + SP
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYP------NTSLPPSILEDSLENNEGVPSP--- 337
Query: 179 MLPHMHFGVKDKETRFRQRYLD-----LMINERI-------RHKFIV----RA--QIIAY 220
ML + + Q Y++ L +++ +V ++ +
Sbjct: 338 ML-----SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 221 VRRY-----LD-------------SLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLY 262
+R+ LD S FL V + PF H+
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPV------------AS-PF---HSH-----L 431
Query: 263 MRIAPELYLKMLVVGGLDR--------VYEV--GRQFRNEGIDLTHN 299
+ A +L K LV + VY+ G R ++
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Score = 35.8 bits (82), Expect = 0.048
Identities = 33/196 (16%), Positives = 56/196 (28%), Gaps = 64/196 (32%)
Query: 222 RRYLDSLGF--LEV--ETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVG 277
+ D+ GF L++ P +T H +R E Y M+
Sbjct: 1651 NHFKDTYGFSILDIVINNP------------VNLTIHFGGEKGKRIR---ENYSAMIFET 1695
Query: 278 GLDRVYEVGRQFR--------------NEGIDLTHN--PEFTTCEFYMAYADYNDLMHLT 321
+D + + F+ + T P T M A + DL
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL----MEKAAFEDL---- 1747
Query: 322 EDLISGRKEDRNRP--CVMA-------NARMYQSEEEFASDLVKI--KRGDIIGVT---G 367
K P A A ++ LV++ RG + V
Sbjct: 1748 -------KSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRD 1800
Query: 368 SPGKTKKGELSIIPKK 383
G++ G ++I P +
Sbjct: 1801 ELGRSNYGMIAINPGR 1816
Score = 29.2 bits (65), Expect = 4.6
Identities = 17/110 (15%), Positives = 29/110 (26%), Gaps = 32/110 (29%)
Query: 458 GATAKPFVTHHNDLNM------DLYMRIAPEL---YLKSTHGSYKVTYHPDGPESGSPVE 508
+ +P H L + A +L + K + D P +P E
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFI-ASQLQEQFNKILPEPTEGFAADDEPT--TPAE 59
Query: 509 -----IDFT----PPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSD 549
+ + P + L L TEF+ +L
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCL-------TEFEN----CYLEG 98
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 38.0 bits (88), Expect = 0.008
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 281 RVYEVGRQFRNEGI-DLTHNPEFTTCEFYMAYADYN----DLMHLTEDLIS--GRKEDRN 333
+++ + R FR E D +H + + A A D + E L+S G +
Sbjct: 226 KLFSIDRCFRREQKEDKSHLMTYHSAS--CAIAGEGVDINDGKAIAEGLLSQFGFTNFKF 283
Query: 334 RP 335
P
Sbjct: 284 IP 285
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 37.3 bits (86), Expect = 0.015
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 281 RVYEVGRQFRNEGI-DLTHNPEFTTCEFYMAYADYN----DLMHLTEDLIS--GRKEDRN 333
+++ + R FR E D +H + + A A D + E L+S G +
Sbjct: 226 KLFSIDRCFRREQKEDKSHLMTYHSAS--CAIAGEGVDINDGKAIAEGLLSQFGFTNFKF 283
Query: 334 RP 335
P
Sbjct: 284 IP 285
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 36.8 bits (85), Expect = 0.018
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 281 RVYEVGRQFRNEGIDLTHNPEFTTCE 306
+ + + R FRNE +D TH EF E
Sbjct: 349 KYFSIDRVFRNETLDATHLAEFHQIE 374
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 36.9 bits (85), Expect = 0.019
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 281 RVYEVGRQFRNEGI-DLTHNPEFTTCEFYMAYADYN----DLMHLTEDLIS--GRKEDRN 333
+++ + R FR E D +H + + A A D + E L+S G +
Sbjct: 226 KLFSIDRCFRREQKEDKSHLMTYHSAS--CAIAGEGVDINDGKAIAEGLLSQFGFTNFKF 283
Query: 334 RP 335
P
Sbjct: 284 IP 285
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 36.1 bits (83), Expect = 0.029
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 281 RVYEVGRQFRNEGI-DLTHNPEFTTCEFYMAYADYN----DLMHLTEDLIS--GRKEDRN 333
+++ + R FR E D +H + + A A D + E L+S G +
Sbjct: 226 KLFSIDRCFRREQKEDKSHLMTYHSAS--CAIAGEGVDINDGKAIAEGLLSQFGFTNFKF 283
Query: 334 RP 335
P
Sbjct: 284 IP 285
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 31.8 bits (72), Expect = 0.59
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 281 RVYEVGRQFRNE-GIDLTHNPEFTTCEFYMAYADYN----DLMHLTEDLIS 326
+++ + R FR E G D T + + D D + E L+
Sbjct: 207 KLFSIDRCFRREQGEDATRLYTYFSAS--CVLVDEELSVDDGKAVAEALLR 255
>3drw_A ADP-specific phosphofructokinase; AMP, cytoplasm, glycolysis,
magnesium, metal-binding, transferase, structural
genomics, PSI-2; HET: AMP; 1.90A {Pyrococcus horikoshii}
PDB: 1u2x_A
Length = 474
Score = 31.9 bits (72), Expect = 0.64
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 13/119 (10%)
Query: 170 LTLLSPCLHMLPHMHFGVKDKETRFRQ--RYLDLMINERIR--------HKFIVRAQIIA 219
+ S L + KD R+ + + ++ +R +II
Sbjct: 239 GAIFS-GYQGLRTKYSDGKDANYYLRRAKEDIIEFKEKDVKIHVEFASVQDRKLRKKIIT 297
Query: 220 YVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDL--NMDLYMRIAPELYLKMLVV 276
+ ++DS+G E E + + G + +N L ++ M I EL ++L V
Sbjct: 298 NILPFVDSVGIDEAEIAQILSVLGYRELADRIFTYNRLEDSILGGMIILDELNFEILQV 356
Score = 30.4 bits (68), Expect = 1.9
Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 13/118 (11%)
Query: 384 LTLLSPCLHMLPHMHFGVKDKETRFRQ--RYLDLMINERIR--------HKFIVRAQIIA 433
+ S L + KD R+ + + ++ +R +II
Sbjct: 239 GAIFS-GYQGLRTKYSDGKDANYYLRRAKEDIIEFKEKDVKIHVEFASVQDRKLRKKIIT 297
Query: 434 YVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDL--NMDLYMRIAPELYLKSTH 489
+ ++DS+G E E + + G + +N L ++ M I EL +
Sbjct: 298 NILPFVDSVGIDEAEIAQILSVLGYRELADRIFTYNRLEDSILGGMIILDELNFEILQ 355
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase,
ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A
2zni_A
Length = 288
Score = 31.0 bits (70), Expect = 1.0
Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 186 GVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIA--- 242
G++ + +R+L+ + + R + ++ + + L GF++V TP + +
Sbjct: 48 GIEHQLMSQGKRHLEQLRTVKHRPALL---ELEEKLAKALHQQGFVQVVTPTIITKSALA 104
Query: 243 --GGATAKPFVTHHNDLNMDLYMR--IAPELYLKMLVVGGL-D---RVYEVGRQFRNEGI 294
P + L+ +R +AP LY + L D R++E+G +R E
Sbjct: 105 KMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIRIFEIGTCYRKESQ 164
Query: 295 DLTHNPEFT 303
H EFT
Sbjct: 165 GAQHLNEFT 173
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural
genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Length = 549
Score = 31.1 bits (70), Expect = 1.2
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 281 RVYEVGRQFRNEGI-DLTHNPEFTTCEFYMAYADYN----DLMHLTEDLIS--GRKEDRN 333
+++ + R FR E D +H + + + D + E L++ G + +
Sbjct: 219 KLFSIDRCFRREQREDRSHLMSYHSAS--CVVVGEDVSVDDGKVVAEGLLAQFGFTKFKF 276
Query: 334 RP 335
+P
Sbjct: 277 KP 278
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.1 bits (67), Expect = 1.4
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 23/82 (28%)
Query: 491 SYKVTYHPDGPESGSPVEI-DFTPPFRRLHMFPALE--------------AA-----LGV 530
+ +V Y + E+ + PP R+ + LE A + +
Sbjct: 119 AIQVNYSSEVKENSVDSDDKAKVPPLIRI-V-SGLELSDTKQKGKKFLVIAYEPFENIAI 176
Query: 531 KLPNPTEFDTPEANKFLSDPNG 552
+LP E E N ++ +G
Sbjct: 177 ELPP-NEILFSENNDMDNNNDG 197
>3qn3_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, glycolysis, lyase; 2.13A
{Campylobacter jejuni}
Length = 417
Score = 30.5 bits (70), Expect = 1.4
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 11/47 (23%)
Query: 223 RYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDL--YMRIAP 267
RYL + PM N+I GGA H + N+D +M I P
Sbjct: 134 RYLGGANASILPVPMCNIINGGA--------HANNNVDFQEFM-IMP 171
Score = 30.5 bits (70), Expect = 1.4
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 11/47 (23%)
Query: 437 RYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDL--YMRIAP 481
RYL + PM N+I GGA H + N+D +M I P
Sbjct: 134 RYLGGANASILPVPMCNIINGGA--------HANNNVDFQEFM-IMP 171
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati
translational regulation, protein/RNA, ligase-RNA
complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 30.6 bits (70), Expect = 1.5
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 212 IVRAQIIAYVRRYLDSLGFLEVETPMM 238
+ ++ +VR L + EV+ P M
Sbjct: 272 TIFRELEVFVRSKLKEYQYQEVKGPFM 298
Score = 30.6 bits (70), Expect = 1.5
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 426 IVRAQIIAYVRRYLDSLGFLEVETPMM 452
+ ++ +VR L + EV+ P M
Sbjct: 272 TIFRELEVFVRSKLKEYQYQEVKGPFM 298
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION,
adenylate analog, deletion mutant, ligase; HET: TSB;
1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB:
1evk_A* 1fyf_A* 1kog_A*
Length = 401
Score = 29.9 bits (68), Expect = 2.3
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 212 IVRAQIIAYVRRYLDSLGFLEVETPMM 238
+ ++ +VR L + EV+ P M
Sbjct: 31 TIFRELEVFVRSKLKEYQYQEVKGPFM 57
Score = 29.9 bits (68), Expect = 2.3
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 426 IVRAQIIAYVRRYLDSLGFLEVETPMM 452
+ ++ +VR L + EV+ P M
Sbjct: 31 TIFRELEVFVRSKLKEYQYQEVKGPFM 57
>3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A
{Anaerostipes caccae}
Length = 449
Score = 29.8 bits (68), Expect = 2.4
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 11/47 (23%)
Query: 223 RYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDL--YMRIAP 267
R+L L + PMMN++ GGA H +D+ +M I P
Sbjct: 156 RFLGGLNANRLPVPMMNILNGGA--------HAANTVDVQEFM-IMP 193
Score = 29.8 bits (68), Expect = 2.4
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 11/47 (23%)
Query: 437 RYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDL--YMRIAP 481
R+L L + PMMN++ GGA H +D+ +M I P
Sbjct: 156 RFLGGLNANRLPVPMMNILNGGA--------HAANTVDVQEFM-IMP 193
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_A*
Length = 294
Score = 29.5 bits (67), Expect = 2.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 286 GRQFRNEGIDLTHNPEFTTCE 306
G+ +R + D TH+ +FT E
Sbjct: 139 GKVYRRDSDDATHSHQFTQIE 159
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting
protein, glycolysis, phosphopyruvate hydratase, lyase;
HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP:
c.1.11.1 d.54.1.1 PDB: 1iyx_A
Length = 444
Score = 29.8 bits (68), Expect = 2.6
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 11/47 (23%)
Query: 223 RYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDL--YMRIAP 267
YL + TPMMN+I GG+ H+D + +M I P
Sbjct: 142 SYLGGFNTKVLPTPMMNIINGGS--------HSDAPIAFQEFM-ILP 179
Score = 29.8 bits (68), Expect = 2.6
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 11/47 (23%)
Query: 437 RYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDL--YMRIAP 481
YL + TPMMN+I GG+ H+D + +M I P
Sbjct: 142 SYLGGFNTKVLPTPMMNIINGGS--------HSDAPIAFQEFM-ILP 179
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics,
joint center for structural genomics, J protein
structure initiative; HET: MSE 2PE SO4; 1.60A
{Ruminococcus gnavus}
Length = 252
Score = 29.6 bits (66), Expect = 2.6
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 13/46 (28%)
Query: 142 KIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGV 187
+K GD++G G G ++G P H+H G+
Sbjct: 189 PVKAGDLLGYMGDSGYGEEGTTGEFP-------------VHLHLGI 221
Score = 29.6 bits (66), Expect = 2.6
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 13/46 (28%)
Query: 356 KIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGV 401
+K GD++G G G ++G P H+H G+
Sbjct: 189 PVKAGDLLGYMGDSGYGEEGTTGEFP-------------VHLHLGI 221
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A
{Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1
d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Length = 645
Score = 29.4 bits (67), Expect = 3.1
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 212 IVRAQIIAYVRRYLDSLGFLEVETPMM 238
+R +I Y+ S+G+ V TP++
Sbjct: 272 TIRREIERYIVDKEVSMGYDHVYTPVL 298
Score = 29.4 bits (67), Expect = 3.1
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 426 IVRAQIIAYVRRYLDSLGFLEVETPMM 452
+R +I Y+ S+G+ V TP++
Sbjct: 272 TIRREIERYIVDKEVSMGYDHVYTPVL 298
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli}
SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Length = 431
Score = 29.4 bits (67), Expect = 3.4
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 11/35 (31%)
Query: 235 TPMMNMIAGGATAKPFVTHHNDLNMDL--YMRIAP 267
PMMN+I GG H D N+D+ +M I P
Sbjct: 147 VPMMNIINGGE--------HADNNVDIQEFM-IQP 172
Score = 29.4 bits (67), Expect = 3.4
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 11/35 (31%)
Query: 449 TPMMNMIAGGATAKPFVTHHNDLNMDL--YMRIAP 481
PMMN+I GG H D N+D+ +M I P
Sbjct: 147 VPMMNIINGGE--------HADNNVDIQEFM-IQP 172
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Length = 428
Score = 29.4 bits (67), Expect = 3.5
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 11/35 (31%)
Query: 235 TPMMNMIAGGATAKPFVTHHNDLNMDL--YMRIAP 267
PMMN+I GGA H N+D +M I P
Sbjct: 146 VPMMNIINGGA--------HATNNLDFQEFM-IVP 171
Score = 29.4 bits (67), Expect = 3.5
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 11/35 (31%)
Query: 449 TPMMNMIAGGATAKPFVTHHNDLNMDL--YMRIAP 481
PMMN+I GGA H N+D +M I P
Sbjct: 146 VPMMNIINGGA--------HATNNLDFQEFM-IVP 171
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold,
RRM domain, RNA recogntion, aminoacyl-tRNA synthetase,
ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB:
3hfv_A* 3teg_A* 3tup_A
Length = 415
Score = 29.5 bits (66), Expect = 3.7
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 277 GGLDRVYEVGRQFRNEGIDLTHNPEFTTCE 306
GLD VG +R + ID H P F E
Sbjct: 130 AGLDAFLVVGDVYRRDQIDSQHYPIFHQLE 159
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A
1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A*
2amc_A*
Length = 350
Score = 28.7 bits (65), Expect = 5.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 286 GRQFRNEGIDLTHNPEFTTCE 306
GR FR E D TH F E
Sbjct: 200 GRVFRFEQTDATHEAVFHQLE 220
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural
GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Length = 427
Score = 28.6 bits (65), Expect = 5.9
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 11/47 (23%)
Query: 223 RYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDL--YMRIAP 267
+YL + PMMN+I GG H ++DL +M I P
Sbjct: 138 KYLGGFNSYVMPVPMMNVINGGK--------HAGNDLDLQEFM-IMP 175
Score = 28.6 bits (65), Expect = 5.9
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 11/47 (23%)
Query: 437 RYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDL--YMRIAP 481
+YL + PMMN+I GG H ++DL +M I P
Sbjct: 138 KYLGGFNSYVMPVPMMNVINGGK--------HAGNDLDLQEFM-IMP 175
>2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2,
HSET2, phosphoctd associating protein, SET2
RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens}
Length = 112
Score = 27.3 bits (60), Expect = 6.0
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 178 HMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLG 229
H+ + GV +KE ++ + DL NE ++HK Y+++Y+ G
Sbjct: 55 HLARKLTHGVMNKELKYCKNPEDLECNENVKHK------TKEYIKKYMQKFG 100
Score = 27.3 bits (60), Expect = 6.0
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 392 HMLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLG 443
H+ + GV +KE ++ + DL NE ++HK Y+++Y+ G
Sbjct: 55 HLARKLTHGVMNKELKYCKNPEDLECNENVKHK------TKEYIKKYMQKFG 100
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 28.3 bits (64), Expect = 6.8
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 132 SEEEFASDLVKIKRGDIIGVTGSPGKT 158
+ E + I+ +TGS GK+
Sbjct: 93 GDIELFCREAQ---APIVAITGSNGKS 116
Score = 28.3 bits (64), Expect = 6.8
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 346 SEEEFASDLVKIKRGDIIGVTGSPGKT 372
+ E + I+ +TGS GK+
Sbjct: 93 GDIELFCREAQ---APIVAITGSNGKS 116
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 28.3 bits (64), Expect = 7.0
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 132 SEEEFASDLVKIKRGDIIGVTGSPGKT 158
+E E A + + +IG+TGS GKT
Sbjct: 101 TEVELAYLVSE---SQLIGITGSNGKT 124
Score = 28.3 bits (64), Expect = 7.0
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 346 SEEEFASDLVKIKRGDIIGVTGSPGKT 372
+E E A + + +IG+TGS GKT
Sbjct: 101 TEVELAYLVSE---SQLIGITGSNGKT 124
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase,
membrane pyrophosphotase, ION pump; 2.60A {Thermotoga
maritima} PDB: 4av6_A
Length = 735
Score = 28.2 bits (63), Expect = 8.3
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 271 LKMLVVG--GLDRVYEVGRQFR-NEGI-DLTHNPEFTTC 305
+ V + V E+ RQ R G+ + P++ C
Sbjct: 570 YLISAVTKAAMKMVDEIRRQAREIPGLLEGKAKPDYNRC 608
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein
biosynthesis, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Length = 471
Score = 28.1 bits (63), Expect = 8.8
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 212 IVRAQIIAYVRRYLDSLGFLEVETPMM 238
+R + + ++ G+ VETP++
Sbjct: 50 PIRYALAEVLAKFHARRGYYVVETPII 76
Score = 28.1 bits (63), Expect = 8.8
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 426 IVRAQIIAYVRRYLDSLGFLEVETPMM 452
+R + + ++ G+ VETP++
Sbjct: 50 PIRYALAEVLAKFHARRGYYVVETPII 76
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A
alanine ligase, MURF protein; HET: 1LG; 2.50A
{Streptococcus pneumoniae} PDB: 2am2_A*
Length = 454
Score = 27.9 bits (63), Expect = 9.4
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 148 IIGVTGSPGKT 158
+ VTGS GKT
Sbjct: 102 VFAVTGSNGKT 112
Score = 27.9 bits (63), Expect = 9.4
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 362 IIGVTGSPGKT 372
+ VTGS GKT
Sbjct: 102 VFAVTGSNGKT 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.403
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,871,140
Number of extensions: 565284
Number of successful extensions: 1521
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1462
Number of HSP's successfully gapped: 110
Length of query: 553
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 455
Effective length of database: 3,965,535
Effective search space: 1804318425
Effective search space used: 1804318425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.7 bits)