RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11418
(553 letters)
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 147 bits (373), Expect = 2e-40
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 1/172 (0%)
Query: 179 MLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMM 238
+LP V +E R + RYLDL + + RA+I + VRR++D GFL++ETPM+
Sbjct: 1 VLPLDSNHVNTEEARLKYRYLDLR-RPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPML 59
Query: 239 NMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTH 298
V + +P+L+ ++L++ G DR Y++ + FR+E +
Sbjct: 60 TKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADR 119
Query: 299 NPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDRNRPCVMANARMYQSEEEF 350
PEFT + ++ + + E L+ + + M +E E
Sbjct: 120 QPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAER 171
Score = 104 bits (259), Expect = 5e-25
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 393 MLPHMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMM 452
+LP V +E R + RYLDL + + RA+I + VRR++D GFL++ETPM+
Sbjct: 1 VLPLDSNHVNTEEARLKYRYLDLR-RPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPML 59
Query: 453 NMIAGGATAKPFVTHHNDLNMDLYMRIAPELYLKSTHGSYKVTYH 497
V + +P+L+ + S Y+
Sbjct: 60 TKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYY 104
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 135 bits (341), Expect = 5e-36
Identities = 40/138 (28%), Positives = 76/138 (55%), Gaps = 1/138 (0%)
Query: 189 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAK 248
+E R + RYLDL R++ +R ++I + +LD GF++VETP +
Sbjct: 19 SEELRLKYRYLDL-RRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARD 77
Query: 249 PFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFY 308
V + ++ + + +P+L+ +ML+V GLDR +++ R FR+E + P+FT +
Sbjct: 78 FLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLE 137
Query: 309 MAYADYNDLMHLTEDLIS 326
M++ + D++ L E L++
Sbjct: 138 MSFVEVEDVLELNERLMA 155
Score = 94.5 bits (234), Expect = 1e-21
Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 403 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAK 462
+E R + RYLDL R++ +R ++I + +LD GF++VETP +
Sbjct: 19 SEELRLKYRYLDL-RRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARD 77
Query: 463 PFVTHHNDLNMDLYMRIAPELYLKSTHGSYKVTYHPDGP-----ESGSPVEIDFTP 513
V + ++ + + +P+L+ + + Y + + + DFT
Sbjct: 78 FLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQ 133
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 342
Score = 135 bits (340), Expect = 6e-36
Identities = 84/135 (62%), Positives = 113/135 (83%)
Query: 189 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAK 248
D+E R+RQRYLDL+ N++ R F+VR++I+A +R+++ + GF+EVETPMM +I GGA+A+
Sbjct: 1 DQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASAR 60
Query: 249 PFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTHNPEFTTCEFY 308
PF+THHN L++D+Y+RIAPELYLK LVVGG +RV+E+ R FRNEGI + HNPEFT E Y
Sbjct: 61 PFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELY 120
Query: 309 MAYADYNDLMHLTED 323
MAYADY+DL+ LTE
Sbjct: 121 MAYADYHDLIELTES 135
Score = 107 bits (267), Expect = 4e-26
Identities = 50/87 (57%), Positives = 73/87 (83%)
Query: 403 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAK 462
D+E R+RQRYLDL+ N++ R F+VR++I+A +R+++ + GF+EVETPMM +I GGA+A+
Sbjct: 1 DQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASAR 60
Query: 463 PFVTHHNDLNMDLYMRIAPELYLKSTH 489
PF+THHN L++D+Y+RIAPELYLK
Sbjct: 61 PFITHHNALDLDMYLRIAPELYLKRLV 87
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 107 bits (268), Expect = 2e-26
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 197 RYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHND 256
RY+ L E+ R V+A ++ RRYLD F E+ TP ++ GA + +
Sbjct: 2 RYVTLR-GEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPK--VVRAGAEGGSGLFGVDY 58
Query: 257 LNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRN-EGIDLTHNPEFTTCEFYMAY-ADY 314
Y+ +P+LY K ++VG +RVYEV +R E H E+ + + M + AD
Sbjct: 59 FEKRAYLAQSPQLY-KQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADE 117
Query: 315 NDLMHLTEDLIS 326
DLM L E L++
Sbjct: 118 EDLMRLEEALLA 129
Score = 82.5 bits (203), Expect = 6e-18
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 411 RYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHND 470
RY+ L E+ R V+A ++ RRYLD F E+ TP ++ GA + +
Sbjct: 2 RYVTLR-GEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPK--VVRAGAEGGSGLFGVDY 58
Query: 471 LNMDLYMRIAPELYLKSTHGSYKVTYHP 498
Y+ +P+LY + G ++ Y
Sbjct: 59 FEKRAYLAQSPQLYKQIMVGVFERVYEV 86
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 107 bits (267), Expect = 2e-26
Identities = 25/137 (18%), Positives = 57/137 (41%), Gaps = 9/137 (6%)
Query: 199 LDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLN 258
++++ + I ++ +I+ Y+ + GF + +++ I P
Sbjct: 3 VEII-SREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAE 61
Query: 259 MD-----LYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGI---DLTHNPEFTTCEFYMA 310
++ + + + L+ ++ + GL +++ + R E D H EFT +F +
Sbjct: 62 VEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVE 121
Query: 311 YADYNDLMHLTEDLISG 327
A D+M L E L+ G
Sbjct: 122 RAKMEDIMRLIERLVYG 138
Score = 73.2 bits (179), Expect = 6e-15
Identities = 8/68 (11%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 413 LDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLN 472
++++ + I ++ +I+ Y+ + GF + +++ I P
Sbjct: 3 VEII-SREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAE 61
Query: 473 MDLYMRIA 480
+++Y
Sbjct: 62 VEIYGVKM 69
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 107 bits (267), Expect = 5e-26
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 5/145 (3%)
Query: 182 HMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI 241
V + +TR R +DL + F ++A + R YL + F EV TP +
Sbjct: 16 AAGLPVVNLDTRLDYRVIDLR-TVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGA 74
Query: 242 AGGATAKPFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDL-THNP 300
+ F + Y+ +P+ + L+V +RVYE+G FR E + H
Sbjct: 75 PSEGGSSVFEVTY--FKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMT 132
Query: 301 EFTTCEFYMAYAD-YNDLMHLTEDL 324
EFT + MA+ + Y++++ +L
Sbjct: 133 EFTGLDMEMAFEEHYHEVLDTLSEL 157
Score = 79.5 bits (195), Expect = 8e-17
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 396 HMHFGVKDKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMI 455
V + +TR R +DL + F ++A + R YL + F EV TP +
Sbjct: 16 AAGLPVVNLDTRLDYRVIDLR-TVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGA 74
Query: 456 AGGATAKPFVTHHNDLNMDLYMRIAPELY 484
+ F + Y+ +P+
Sbjct: 75 PSEGGSSVFEVTY--FKGKAYLAQSPQFN 101
>d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 143
Score = 101 bits (252), Expect = 6e-26
Identities = 43/142 (30%), Positives = 69/142 (48%), Gaps = 4/142 (2%)
Query: 41 SEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLE-NVTLSVAGRV 99
++ R R + +++QG +P+ F + + E++ + ++ N+ +SVAGR+
Sbjct: 5 NDELRNRREKLAALRQQG-VAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRM 63
Query: 100 HAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTK 159
R G K F L+ G +IQ+ R E + K GDIIG G+ KT+
Sbjct: 64 MTRRIMG-KASFVTLQDVGGRIQLYVA-RDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQ 121
Query: 160 KGELSIIPKKLTLLSPCLHMLP 181
GELSI +L LL+ L LP
Sbjct: 122 TGELSIHCTELRLLTKALRPLP 143
Score = 57.7 bits (139), Expect = 1e-10
Identities = 28/101 (27%), Positives = 39/101 (38%)
Query: 295 DLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDRNRPCVMANARMYQSEEEFASDL 354
D N E + ++ A + +D + AR E +
Sbjct: 43 DAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQF 102
Query: 355 VKIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLP 395
K GDIIG G+ KT+ GELSI +L LL+ L LP
Sbjct: 103 KKWDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLP 143
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 103 bits (257), Expect = 7e-25
Identities = 39/184 (21%), Positives = 76/184 (41%), Gaps = 5/184 (2%)
Query: 189 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAK 248
+ +TR R++DL + F +R+ + VR + GF+E+ TP + A +
Sbjct: 13 ELDTRLNNRFMDLR-RPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTE 71
Query: 249 PFVTHHNDLNMDLYMRIAPELYLKMLVVGGLDRVYEVGRQFRNEGIDLTH--NPEFTTCE 306
F + + + ++ +P+LY ++++ GLDRVYE+ FR E + T N ++
Sbjct: 72 LFPMKYFEEDA--FLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDS 129
Query: 307 FYMAYADYNDLMHLTEDLISGRKEDRNRPCVMANARMYQSEEEFASDLVKIKRGDIIGVT 366
D ++M E L++ + EE ++ + +
Sbjct: 130 EMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPKLPFPRVSYDKALEIL 189
Query: 367 GSPG 370
G G
Sbjct: 190 GDLG 193
Score = 82.6 bits (203), Expect = 9e-18
Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Query: 403 DKETRFRQRYLDLMINERIRHKFIVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAK 462
+ +TR R++DL + F +R+ + VR + GF+E+ TP + A +
Sbjct: 13 ELDTRLNNRFMDLR-RPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTE 71
Query: 463 PFVTHHNDLNMDLYMRIAPELYLKSTHGSYKVTYH 497
F + + + ++ +P+LY + S +
Sbjct: 72 LFPMKYFEEDA--FLAESPQLYKEIMMASGLDRVY 104
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 61.6 bits (149), Expect = 4e-12
Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 10/131 (7%)
Query: 58 GPHPYPHKFTVTSSLEDFIEKYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGE 117
G P + + + K+ DL +A+ + + RVH R+ G L F LR +
Sbjct: 6 GKLPLIQSRDSDRTGQKRV-KFVDLDEAK-DSDKEVLFRARVHNTRQQGATLAFLTLRQQ 63
Query: 118 GLKIQVMANARMYQSEEEFASDLVK-IKRGDIIGVTGSPGKTKK-------GELSIIPKK 169
IQ + A + + + I+ V G K + L I K
Sbjct: 64 ASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITK 123
Query: 170 LTLLSPCLHML 180
+ +S L
Sbjct: 124 IYTISETPEAL 134
Score = 33.5 bits (76), Expect = 0.020
Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 7/66 (10%)
Query: 336 CVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK-------GELSIIPKKLTLLS 388
++ + + + I+ V G K + L I K+ +S
Sbjct: 69 GLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTIS 128
Query: 389 PCLHML 394
L
Sbjct: 129 ETPEAL 134
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus
thermophilus, AspRS-2 [TaxId: 274]}
Length = 93
Score = 55.2 bits (133), Expect = 2e-10
Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 18/106 (16%)
Query: 78 KYSDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFA 137
DL + + G +H R+ G ++ F LR +QV+
Sbjct: 4 LVRDLKA---HVGQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQVVTGGLK-------- 51
Query: 138 SDLVKIKRGDIIGVTGSPGKTKK--GELSIIPKKLTLLSPCLHMLP 181
+ V G + K G L + K++ +LSP L P
Sbjct: 52 ----LPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTP 93
Score = 32.9 bits (75), Expect = 0.015
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 356 KIKRGDIIGVTGSPGKTKK--GELSIIPKKLTLLSPCLHMLP 395
+ V G + K G L + K++ +LSP L P
Sbjct: 52 LPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTP 93
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 103
Score = 47.0 bits (111), Expect = 3e-07
Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 80 SDLPDAQVLENVTLSVAGRVHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASD 139
S++ + + V + AG V +++ G + F +R +Q+ A + + E
Sbjct: 8 SEITEELNGQKVKV--AGWVWEVKDLG-GIKFLWIRDRDGIVQITAP--KKKVDPELFKL 62
Query: 140 LVKIKRGDIIGVTGSPGKTKKGELS--IIPKKLTLLS 174
+ K++ D++ V G T K +L I+P+K+ +L+
Sbjct: 63 IPKLRSEDVVAVEGVVNFTPKAKLGFEILPEKIVVLN 99
>d1h6za2 c.8.1.1 (A:406-537) Pyruvate phosphate dikinase, central
domain {Trypanosoma brucei [TaxId: 5691]}
Length = 132
Score = 33.9 bits (77), Expect = 0.017
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 333 NRPCVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGEL 377
+ CV M + F + + GD I + GS G G+L
Sbjct: 86 GKCCVSGCGDMVIRGKSFKLNGSVFREGDYITIDGSKGLIYAGKL 130
Score = 30.4 bits (68), Expect = 0.24
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 102 IRESGTKLMFYDLRGEGLKI-QVMANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKK 160
+ G + G+ V M + F + + GD I + GS G
Sbjct: 68 LTARGGMTSHAAVVARGMGKCCVSGCGDMVIRGKSFKLNGSVFREGDYITIDGSKGLIYA 127
Query: 161 GEL 163
G+L
Sbjct: 128 GKL 130
>d1kbla2 c.8.1.1 (A:377-509) Pyruvate phosphate dikinase, central
domain {Clostridium symbiosum [TaxId: 1512]}
Length = 133
Score = 31.5 bits (71), Expect = 0.11
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 332 RNRPCVM--ANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGE 376
CV ++ + + F GD I + GS GK KG+
Sbjct: 87 MGTCCVSGCGEIKINEEAKTFELGGHTFAEGDYISLDGSTGKIYKGD 133
Score = 27.7 bits (61), Expect = 1.9
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 124 MANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGE 162
++ + + F GD I + GS GK KG+
Sbjct: 95 CGEIKINEEAKTFELGGHTFAEGDYISLDGSTGKIYKGD 133
>d1vbga2 c.8.1.1 (A:383-517) Pyruvate phosphate dikinase, central
domain {Maize (Zea mays) [TaxId: 4577]}
Length = 135
Score = 30.8 bits (69), Expect = 0.16
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 333 NRPCVMA--NARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIP 381
+ CV R+ +E+ ++ G+ + + GS G+ G+ + P
Sbjct: 85 GKCCVSGCSGIRVNDAEKLVTIGGHVLREGEWLSLNGSTGEVILGKQPLSP 135
Score = 26.9 bits (59), Expect = 3.2
Identities = 8/44 (18%), Positives = 20/44 (45%)
Query: 124 MANARMYQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIP 167
+ R+ +E+ ++ G+ + + GS G+ G+ + P
Sbjct: 92 CSGIRVNDAEKLVTIGGHVLREGEWLSLNGSTGEVILGKQPLSP 135
>d1u2xa_ c.72.1.3 (A:) ADP-specific phosphofructokinase {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 450
Score = 30.6 bits (69), Expect = 0.49
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 11/85 (12%)
Query: 170 LTLLSPCLHMLPHMHFGVKDKETRFR--QRYLDLMINERIR--------HKFIVRAQIIA 219
+ S L + KD R + + + ++ +R +II
Sbjct: 217 GAIFS-GYQGLRTKYSDGKDANYYLRRAKEDIIEFKEKDVKIHVEFASVQDRKLRKKIIT 275
Query: 220 YVRRYLDSLGFLEVETPMMNMIAGG 244
+ ++DS+G E E + + G
Sbjct: 276 NILPFVDSVGIDEAEIAQILSVLGY 300
Score = 30.6 bits (69), Expect = 0.49
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 11/85 (12%)
Query: 384 LTLLSPCLHMLPHMHFGVKDKETRFR--QRYLDLMINERIR--------HKFIVRAQIIA 433
+ S L + KD R + + + ++ +R +II
Sbjct: 217 GAIFS-GYQGLRTKYSDGKDANYYLRRAKEDIIEFKEKDVKIHVEFASVQDRKLRKKIIT 275
Query: 434 YVRRYLDSLGFLEVETPMMNMIAGG 458
+ ++DS+G E E + + G
Sbjct: 276 NILPFVDSVGIDEAEIAQILSVLGY 300
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 291
Score = 30.1 bits (67), Expect = 0.57
Identities = 12/76 (15%), Positives = 33/76 (43%)
Query: 426 IVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYL 485
+R +I Y+ S+G+ V TP++ + T+ + + D+ + + + L
Sbjct: 31 TIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVL 90
Query: 486 KSTHGSYKVTYHPDGP 501
+ + + + + + P
Sbjct: 91 RPMNCPHHMMIYANKP 106
Score = 27.4 bits (60), Expect = 5.1
Identities = 11/62 (17%), Positives = 27/62 (43%)
Query: 212 IVRAQIIAYVRRYLDSLGFLEVETPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAPELYL 271
+R +I Y+ S+G+ V TP++ + T+ + + D+ + + + L
Sbjct: 31 TIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVL 90
Query: 272 KM 273
+
Sbjct: 91 RP 92
>d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus
aureus [TaxId: 1280]}
Length = 270
Score = 29.2 bits (65), Expect = 1.2
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 25/94 (26%)
Query: 99 VHAIRESGTKLMFYDLRGEGLKIQVMANARMYQSEEEFASDLV-----KIKRGDIIGVTG 153
V+++ + + G G ++ + + L K+K GD I +G
Sbjct: 179 VYSLTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSG 238
Query: 154 SPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGV 187
S G + PH+HF
Sbjct: 239 STGNSTA--------------------PHVHFQR 252
Score = 27.3 bits (60), Expect = 4.5
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 20/46 (43%)
Query: 356 KIKRGDIIGVTGSPGKTKKGELSIIPKKLTLLSPCLHMLPHMHFGV 401
K+K GD I +GS G + PH+HF
Sbjct: 227 KVKAGDQIAYSGSTGNSTA--------------------PHVHFQR 252
>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase
MurC {Thermotoga maritima [TaxId: 2336]}
Length = 207
Score = 28.9 bits (63), Expect = 1.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 135 EFASDLVKIKRGDIIGVTGSPGKT 158
+ D +K ++ + VTG+ GKT
Sbjct: 3 HYFRDTLKREKKEEFAVTGTDGKT 26
Score = 28.9 bits (63), Expect = 1.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 349 EFASDLVKIKRGDIIGVTGSPGKT 372
+ D +K ++ + VTG+ GKT
Sbjct: 3 HYFRDTLKREKKEEFAVTGTDGKT 26
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
{Escherichia coli [TaxId: 562]}
Length = 291
Score = 28.1 bits (62), Expect = 2.3
Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 17/129 (13%)
Query: 211 FIVRAQIIAYVRRYLDSLGFLEVETPMM------NMIAGGATAKPFVTHHNDLNMDLYMR 264
+ + ++ +VR L + EV+ P M K + + N + ++
Sbjct: 30 WTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIK 89
Query: 265 IAPELYLKMLVVGGLD-------RVYEVGRQFRNE----GIDLTHNPEFTTCEFYMAYAD 313
+ GL R+ E G RNE L FT + ++ +
Sbjct: 90 PMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTE 149
Query: 314 YNDLMHLTE 322
+
Sbjct: 150 EQIRDEVNG 158
Score = 27.7 bits (61), Expect = 3.9
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 425 FIVRAQIIAYVRRYLDSLGFLEVETPMM 452
+ + ++ +VR L + EV+ P M
Sbjct: 30 WTIFRELEVFVRSKLKEYQYQEVKGPFM 57
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p)
{Deinococcus radiodurans [TaxId: 1299]}
Length = 110
Score = 26.6 bits (59), Expect = 3.6
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 141 VKIKRGDIIGVTGSPGKTKKGE-LSIIPKK 169
+ K+GD + V K + G+ L +P+
Sbjct: 11 LHFKKGDTVIVLSGKHKGQTGKVLLALPRD 40
Score = 26.6 bits (59), Expect = 3.6
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 355 VKIKRGDIIGVTGSPGKTKKGE-LSIIPKK 383
+ K+GD + V K + G+ L +P+
Sbjct: 11 LHFKKGDTVIVLSGKHKGQTGKVLLALPRD 40
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p)
{Escherichia coli [TaxId: 562]}
Length = 99
Score = 26.2 bits (58), Expect = 3.7
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 142 KIKRGDIIGVTGSPGKTKKGE-LSIIPKK 169
KI+R D + V K K+G+ +++
Sbjct: 1 KIRRDDEVIVLTGKDKGKRGKVKNVLSSG 29
Score = 26.2 bits (58), Expect = 3.7
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 356 KIKRGDIIGVTGSPGKTKKGE-LSIIPKK 383
KI+R D + V K K+G+ +++
Sbjct: 1 KIRRDDEVIVLTGKDKGKRGKVKNVLSSG 29
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus
thermophilus [TaxId: 274]}
Length = 101
Score = 26.2 bits (58), Expect = 4.0
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 142 KIKRGDIIGVTGSPGKTKKGE-LSIIPKK 169
+K+GD + V K + G+ ++PKK
Sbjct: 5 HVKKGDTVLVASGKYKGRVGKVKEVLPKK 33
Score = 26.2 bits (58), Expect = 4.0
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 356 KIKRGDIIGVTGSPGKTKKGE-LSIIPKK 383
+K+GD + V K + G+ ++PKK
Sbjct: 5 HVKKGDTVLVASGKYKGRVGKVKEVLPKK 33
>d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 116
Score = 26.2 bits (57), Expect = 5.1
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 16 ENSQQHTTAQ-TVTHLNTNYTQQCLTSEFFRLRSAAVEQMKEQGPHPYPHKFTVTSSLED 74
E ++ T + V+ + + +EF +L ++ +Q + + D
Sbjct: 17 EKKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKRIFGDNFDPD 76
Query: 75 FIEK 78
FI++
Sbjct: 77 FIKQ 80
>d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId:
562]}
Length = 292
Score = 27.3 bits (60), Expect = 5.2
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 7/33 (21%)
Query: 235 TPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAP 267
PMMN+I GG A N++++ +M I P
Sbjct: 8 VPMMNIINGGEHAD------NNVDIQEFM-IQP 33
Score = 27.3 bits (60), Expect = 5.2
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 7/33 (21%)
Query: 449 TPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAP 481
PMMN+I GG A N++++ +M I P
Sbjct: 8 VPMMNIINGGEHAD------NNVDIQEFM-IQP 33
>d2jfga3 c.72.2.1 (A:94-297)
UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
{Escherichia coli [TaxId: 562]}
Length = 204
Score = 27.0 bits (58), Expect = 5.3
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 135 EFASDLVKIKRGDIIGVTGSPGKT 158
E + I+ +TGS GK+
Sbjct: 3 ELFCREAQAP---IVAITGSNGKS 23
Score = 27.0 bits (58), Expect = 5.3
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 349 EFASDLVKIKRGDIIGVTGSPGKT 372
E + I+ +TGS GK+
Sbjct: 3 ELFCREAQAP---IVAITGSNGKS 23
>d1gc5a_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon
Thermococcus litoralis [TaxId: 2265]}
Length = 467
Score = 27.5 bits (61), Expect = 5.4
Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 10/84 (11%)
Query: 170 LTLLSPCLHMLPHMHFGVKDKETRFRQ--RYLDLMINERIRHKF----IVRAQIIAYVRR 223
L ++S L +L + + + +L+++ ++ F ++ +
Sbjct: 236 LAIIS-GLQVLKEYYPDGTTYKDVLDRVESHLNILNRYNVKSHFEFAYTANRRVREALVE 294
Query: 224 ---YLDSLGFLEVETPMMNMIAGG 244
S+G EVE + I G
Sbjct: 295 LLPKFTSVGLNEVELASIMEIIGD 318
Score = 27.5 bits (61), Expect = 5.4
Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 10/84 (11%)
Query: 384 LTLLSPCLHMLPHMHFGVKDKETRFRQ--RYLDLMINERIRHKF----IVRAQIIAYVRR 437
L ++S L +L + + + +L+++ ++ F ++ +
Sbjct: 236 LAIIS-GLQVLKEYYPDGTTYKDVLDRVESHLNILNRYNVKSHFEFAYTANRRVREALVE 294
Query: 438 ---YLDSLGFLEVETPMMNMIAGG 458
S+G EVE + I G
Sbjct: 295 LLPKFTSVGLNEVELASIMEIIGD 318
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase
regulatory subunit HisZ {Lactococcus lactis [TaxId:
1358]}
Length = 318
Score = 27.3 bits (59), Expect = 5.6
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 213 VRAQIIAYVRRYLDSLGFLEVETPMM 238
QI +R+ + EV P
Sbjct: 17 SLRQIEGRLRKLFSLKNYQEVMPPSF 42
Score = 27.3 bits (59), Expect = 5.6
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 427 VRAQIIAYVRRYLDSLGFLEVETPMM 452
QI +R+ + EV P
Sbjct: 17 SLRQIEGRLRKLFSLKNYQEVMPPSF 42
>d3bi1a1 a.48.2.1 (A:594-750) Glutamate carboxypeptidase II {Human
(Homo sapiens) [TaxId: 9606]}
Length = 157
Score = 26.5 bits (58), Expect = 5.8
Identities = 11/98 (11%), Positives = 27/98 (27%), Gaps = 8/98 (8%)
Query: 284 EVGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMHLTEDLISGRKEDRNRPCVMANARM 343
+ ++ + + + A ++ ++ + + + M N ++
Sbjct: 24 KHPQEMKTYSVSFDS--------LFSAVKNFTEIASKFSERLQDFDKSNPIVLRMMNDQL 75
Query: 344 YQSEEEFASDLVKIKRGDIIGVTGSPGKTKKGELSIIP 381
E F L R V +P K P
Sbjct: 76 MFLERAFIDPLGLPDRPFYRHVIYAPSSHNKYAGESFP 113
>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide
D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli
[TaxId: 562]}
Length = 214
Score = 27.0 bits (58), Expect = 6.0
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 148 IIGVTGSPGKT 158
++ +TGS GKT
Sbjct: 4 VVALTGSSGKT 14
Score = 27.0 bits (58), Expect = 6.0
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 362 IIGVTGSPGKT 372
++ +TGS GKT
Sbjct: 4 VVALTGSSGKT 14
>d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 296
Score = 26.8 bits (59), Expect = 6.4
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 235 TPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAP 267
TPMMN+I GG+ + + +M I P
Sbjct: 7 TPMMNIINGGSHS------DAPIAFQEFM-ILP 32
Score = 26.8 bits (59), Expect = 6.4
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 449 TPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAP 481
TPMMN+I GG+ + + +M I P
Sbjct: 7 TPMMNIINGGSHS------DAPIAFQEFM-ILP 32
>d2ptza1 c.1.11.1 (A:139-429) Enolase {Trypanosoma brucei [TaxId:
5691]}
Length = 291
Score = 26.5 bits (58), Expect = 8.3
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 235 TPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAP 267
P N+I GG A N L +M IAP
Sbjct: 7 VPCFNVINGGKHAG------NALPFQEFM-IAP 32
Score = 26.5 bits (58), Expect = 8.3
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 449 TPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAP 481
P N+I GG A N L +M IAP
Sbjct: 7 VPCFNVINGGKHAG------NALPFQEFM-IAP 32
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase
{Pseudomonas sp., strain 101 [TaxId: 306]}
Length = 186
Score = 26.1 bits (57), Expect = 8.4
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 493 KVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVK 531
K+ ++P G +P IDFTP + ++ LG++
Sbjct: 26 KIDHYPGGQTLPTPKAIDFTPG----QLLGSVSGELGLR 60
>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide
synthetase MurE {Escherichia coli [TaxId: 562]}
Length = 234
Score = 26.3 bits (56), Expect = 8.5
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 148 IIGVTGSPGKT 158
++GVTG+ GKT
Sbjct: 7 LVGVTGTNGKT 17
Score = 26.3 bits (56), Expect = 8.5
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 362 IIGVTGSPGKT 372
++GVTG+ GKT
Sbjct: 7 LVGVTGTNGKT 17
>d2akza1 c.1.11.1 (A:140-433) Enolase {Human (Homo sapiens), gamma
isoform [TaxId: 9606]}
Length = 294
Score = 26.5 bits (58), Expect = 9.3
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 235 TPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAP 267
P N+I GG+ A N L M +M I P
Sbjct: 7 VPAFNVINGGSHAG------NKLAMQEFM-ILP 32
Score = 26.5 bits (58), Expect = 9.3
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 449 TPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAP 481
P N+I GG+ A N L M +M I P
Sbjct: 7 VPAFNVINGGSHAG------NKLAMQEFM-ILP 32
>d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 295
Score = 26.5 bits (58), Expect = 9.3
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 235 TPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAP 267
P +N++ GG+ A L + +M IAP
Sbjct: 7 VPFLNVLNGGSHAG------GALALQEFM-IAP 32
Score = 26.5 bits (58), Expect = 9.3
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 449 TPMMNMIAGGATAKPFVTHHNDLNMDLYMRIAP 481
P +N++ GG+ A L + +M IAP
Sbjct: 7 VPFLNVLNGGSHAG------GALALQEFM-IAP 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.403
Gapped
Lambda K H
0.267 0.0550 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,135,014
Number of extensions: 105461
Number of successful extensions: 366
Number of sequences better than 10.0: 1
Number of HSP's gapped: 350
Number of HSP's successfully gapped: 72
Length of query: 553
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 463
Effective length of database: 1,171,896
Effective search space: 542587848
Effective search space used: 542587848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)