Query psy11419
Match_columns 244
No_of_seqs 82 out of 84
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 17:56:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11419.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11419hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zy2_A Putative GDP-fucose pro 100.0 2E-104 5E-109 734.5 9.1 203 1-243 19-229 (362)
2 4ap5_A GDP-fucose protein O-fu 100.0 1.2E-49 4.2E-54 359.3 4.9 203 2-243 35-257 (408)
3 2hhc_A NODZ, nodulation fucosy 97.4 6.6E-05 2.3E-09 65.3 3.2 46 196-242 140-185 (330)
4 2de0_X Alpha-(1,6)-fucosyltran 95.2 0.028 9.5E-07 53.9 6.3 40 2-49 158-199 (526)
5 2hhc_A NODZ, nodulation fucosy 76.3 1.2 4E-05 38.5 2.2 26 1-26 14-39 (330)
6 4ap5_A GDP-fucose protein O-fu 58.3 3.8 0.00013 36.8 1.7 49 71-121 129-177 (408)
7 1yz4_A DUSP15, dual specificit 15.1 1.3E+02 0.0044 22.7 3.3 28 211-238 70-97 (160)
8 2g2q_A Glutaredoxin-2; thiored 13.7 2.5E+02 0.0084 22.9 4.7 46 30-77 75-123 (124)
9 1t0b_A THUA-like protein; treh 13.3 1.1E+02 0.0039 25.9 2.8 36 205-243 81-117 (252)
10 2d1s_A Luciferase, luciferin 4 12.8 1.5E+02 0.0053 26.6 3.6 40 202-241 54-93 (548)
No 1
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=100.00 E-value=1.6e-104 Score=734.49 Aligned_cols=203 Identities=44% Similarity=0.968 Sum_probs=189.4
Q ss_pred CccchhhhhhhHHHHHhhcCceEeeCCeeecccCCCCccccCCcccccccccccccceeeHHHHHHhhCCCCCCCCCeee
Q psy11419 1 RFGNQADNFLGALALAKGINRTLVLPPWVEYRYGEPKSIQVPFDTYFQVEPLQEYHRVMTMEKFMQDIAPHIWPPHKRIA 80 (244)
Q Consensus 1 RFGNQadhFLG~LafAk~lNRTLVLPPWieY~h~~~~sv~IPF~~yFqVepL~eYhRVI~MEeFM~~iap~~WP~~~R~~ 80 (244)
|||||||||||+|||||+|||||||||||||+|++ +++|||++||+|+||++|||||+|||||++|||+||||+||+|
T Consensus 19 RFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~~~--~~~vpf~~yF~v~~l~~yhrvi~me~Fm~~lap~~WP~~~R~~ 96 (362)
T 3zy2_A 19 RFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKHPE--TKMIPFEFLFQVGTVAKYTRVVTMQEFTKKIMPTVWPPEKRKA 96 (362)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCEEECCCEEECSSSS--CEEECHHHHBCHHHHTTTSCEECHHHHHHHTHHHHSCGGGCEE
T ss_pred ccccHHHHHHHHHHHHHhhCceEecCccccccCCc--ccccchhheeecchhhhhceeeeHHHHHHHhccccCCcccceE
Confidence 99999999999999999999999999999999987 6999999999999999999999999999999999999999999
Q ss_pred eeeecC----CCCCCCCCCCCCCCCCCcccccccceeecceeecc----ccccccCchhHhhhhhcCCCCCCCCCccccc
Q psy11419 81 FCYMAR----GSTNESSCNAKEGNPFGPFWDTYGIDFVGSEFYGP----LHYDVHHSDIAEHWKMRYPSDDWPVSGYCRT 152 (244)
Q Consensus 81 fC~~~r----~~~~~~~C~aKeGNPFGpFWD~~~idFv~se~~~~----l~~d~~~~~~~~~W~~~yP~~~~P~~~~~~~ 152 (244)
|||+.| ++.++++|+||||||||||||+|||||++||+|+| |+|++ ++++++|+++||+++||
T Consensus 97 ~C~~~~~~~~~~~~~~~C~~K~GNPFgpfWd~f~v~F~~se~~~~~~~~l~~~~--~~~~~~W~~~~p~~~~p------- 167 (362)
T 3zy2_A 97 FCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQ--MGSRKKWLEKFPSEEYP------- 167 (362)
T ss_dssp EESSCBC-------CCBCCTTSSTTHHHHHHHTTCCCCEEEECTTSTTTTCC---------CHHHHSCTTTCS-------
T ss_pred eeccccccccCCCCCCCCCCCCCCCCCcchhccccccccceeccCccccccccc--hhHHHHHHHhCCcccCc-------
Confidence 999998 44567899999999999999999999999999998 99965 56789999999999999
Q ss_pred cCCCcchhhhhhcCccccccCCCCcccceEEecCCCCCCCCccccccccccccccHHHHHHHHHHHHhhCCCCCeEEEEe
Q psy11419 153 MGRTPSLAAIQTLNPLGKKSLSNFQCFPVIAFTGAPGSFPVQDENRVLQKYLVWTEKIANQAKTFIKNKLPAGAYIGIHL 232 (244)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlAf~gAPasFPv~~e~r~lqkYl~Ws~~i~~~a~~fI~~~L~~gpfvgIHL 232 (244)
||||+||||+|||+.|||.|||||+||++|+++|++||+++|++ |||||||
T Consensus 168 ----------------------------VlAf~gaPa~FPv~~e~r~LqkYm~WS~~i~~~a~~fI~~~L~r-pyVgIHL 218 (362)
T 3zy2_A 168 ----------------------------VLAFSSAPAPFPSKGKVWSIQKYLRWSSRITEQAKKFISANLAK-PFVAVHL 218 (362)
T ss_dssp ----------------------------EEEESSCSSCSSCCGGGGGGGGGCCBCHHHHHHHHHHHHHHCCS-SEEEEEE
T ss_pred ----------------------------eEeecCCCCCCCcChhhHhHHHhccccHHHHHHHHHHHHHhcCC-CeEEEEE
Confidence 99999999999999999999999999999999999999999998 9999999
Q ss_pred ecCCChhhhcC
Q psy11419 233 RNGIDWPRLLG 243 (244)
Q Consensus 233 Rng~DW~raC~ 243 (244)
|||+||+|||+
T Consensus 219 R~G~DW~~aC~ 229 (362)
T 3zy2_A 219 RNDADWVRVCE 229 (362)
T ss_dssp CCCHHHHHHHH
T ss_pred ecCCcHHHHHh
Confidence 99999999997
No 2
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=100.00 E-value=1.2e-49 Score=359.28 Aligned_cols=203 Identities=15% Similarity=0.166 Sum_probs=183.7
Q ss_pred ccchhhhhhhHHHHHhhcCce----EeeCCeeecccCCCC---ccccCCcccccccccccccceeeHHHHHHhhCCCCCC
Q psy11419 2 FGNQADNFLGALALAKGINRT----LVLPPWVEYRYGEPK---SIQVPFDTYFQVEPLQEYHRVMTMEKFMQDIAPHIWP 74 (244)
Q Consensus 2 FGNQadhFLG~LafAk~lNRT----LVLPPWieY~h~~~~---sv~IPF~~yFqVepL~eYhRVI~MEeFM~~iap~~WP 74 (244)
|+||.|+|+++++|||.|||| ||||||++++|++.+ +.+|||++||+|++|++||+||+|||||++.+|.+||
T Consensus 35 fn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~~~vpVI~meeFl~~~~~~~~~ 114 (408)
T 4ap5_A 35 FNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNKNIPVIEYEQFIAESGGPFID 114 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHHTTSCEEEHHHHHHHSSSSEEE
T ss_pred ccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHHhhCCeeEHHHHHHHhCCCCCc
Confidence 899999999999999999999 999999999998663 6889999999999999999999999999999999998
Q ss_pred --------CCCeeeeeeecCC-----CCCCCCCCCCCCCCCCcccccccceeecceeeccccccccCchhHhhhhhcCCC
Q psy11419 75 --------PHKRIAFCYMARG-----STNESSCNAKEGNPFGPFWDTYGIDFVGSEFYGPLHYDVHHSDIAEHWKMRYPS 141 (244)
Q Consensus 75 --------~~~R~~fC~~~r~-----~~~~~~C~aKeGNPFGpFWD~~~idFv~se~~~~l~~d~~~~~~~~~W~~~yP~ 141 (244)
.+.+..+||..+. ......|++|+|||||||||+.+|++..++. +++.-..+..+..|.+.+++
T Consensus 115 ~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c---~~~~~~~~~~~~~~~~~~~~ 191 (408)
T 4ap5_A 115 QVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSC---LSVQGSASIVAPLLLRNTSA 191 (408)
T ss_dssp EEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEE---EEECSBGGGGHHHHHHCTTC
T ss_pred ceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCcee---EEEeecchhhhhhhhhcCCh
Confidence 6777888876651 1222356899999999999999999988774 45666677788999999999
Q ss_pred CCCCCCccccccCCCcchhhhhhcCccccccCCCCcccceEEecCCCCCCCCccccccccccccccHHHHHHHHHHHHhh
Q psy11419 142 DDWPVSGYCRTMGRTPSLAAIQTLNPLGKKSLSNFQCFPVIAFTGAPGSFPVQDENRVLQKYLVWTEKIANQAKTFIKNK 221 (244)
Q Consensus 142 ~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VlAf~gAPasFPv~~e~r~lqkYl~Ws~~i~~~a~~fI~~~ 221 (244)
..+| |+++.++|++||.+.+++.+++||+|++.|.+.|++||++.
T Consensus 192 ~s~~-----------------------------------v~~~e~~l~~~~~~~~~~~~~r~l~~s~~l~~~a~~fi~~~ 236 (408)
T 4ap5_A 192 RSVM-----------------------------------LDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGDEFRSRH 236 (408)
T ss_dssp SEEE-----------------------------------EESGGGSBCSSTTSHHHHHHHHTCCBCHHHHHHHHHHHHHH
T ss_pred hhhh-----------------------------------hhhcccCCccccchHhhhhHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999 99999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEeecCCChhhhcC
Q psy11419 222 LPAGAYIGIHLRNGIDWPRLLG 243 (244)
Q Consensus 222 L~~gpfvgIHLRng~DW~raC~ 243 (244)
|.+ +++|+|+|+|.||.++|.
T Consensus 237 L~~-~~~~~h~r~~~dw~~~~~ 257 (408)
T 4ap5_A 237 LNS-TDDADRIPFQEDWMKMKV 257 (408)
T ss_dssp HCC-CTTTTTCCCCSSGGGCCC
T ss_pred hCc-ccceeecccchhHhhhhc
Confidence 986 999999999999999985
No 3
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=97.42 E-value=6.6e-05 Score=65.26 Aligned_cols=46 Identities=15% Similarity=0.417 Sum_probs=36.1
Q ss_pred ccccccccccccHHHHHHHHHHHHhhCCCCCeEEEEeecCCChhhhc
Q psy11419 196 ENRVLQKYLVWTEKIANQAKTFIKNKLPAGAYIGIHLRNGIDWPRLL 242 (244)
Q Consensus 196 e~r~lqkYl~Ws~~i~~~a~~fI~~~L~~gpfvgIHLRng~DW~raC 242 (244)
..+.|+|||+|++.|.++.++++++.+.+.++||||.|.|.+ .++|
T Consensus 140 ~~~~i~~yl~p~~~i~~~i~~~~~~~~~~~~~VGVHIRrgD~-~~~~ 185 (330)
T 2hhc_A 140 AERLIFRNIKLRSEIRARIDALYEEHFSGHSIIGVHVRHGNG-EDIM 185 (330)
T ss_dssp HHHHHHHHSCBCHHHHHHHHHHHHHHTTTSEEEEEEECC--------
T ss_pred hHHHHHhcCCccHHHHHHHHHHHHHhccCCceEEEEEecCCC-Cccc
Confidence 578889999999999999999999888767999999999963 5444
No 4
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=95.18 E-value=0.028 Score=53.91 Aligned_cols=40 Identities=30% Similarity=0.565 Sum_probs=32.0
Q ss_pred ccchhhhhhhHHHHHhhcCceEeeCC--eeecccCCCCccccCCcccccc
Q psy11419 2 FGNQADNFLGALALAKGINRTLVLPP--WVEYRYGEPKSIQVPFDTYFQV 49 (244)
Q Consensus 2 FGNQadhFLG~LafAk~lNRTLVLPP--WieY~h~~~~sv~IPF~~yFqV 49 (244)
||+|+.|.+.+|..|-+.|||||+-. |. |.+ =-|+.||+-
T Consensus 158 fGs~lh~l~~~L~~A~~~~Rtliidd~~w~-Y~~-------g~w~~yF~P 199 (526)
T 2de0_X 158 YGCQLHHVVYCFMIAYGTQRTLILESQNWR-YAT-------GGWETVFRP 199 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEECTTCS-SCT-------TCGGGTBCC
T ss_pred hHHHHHHHHHHHHHHHhhCCEEEEECCCCC-cCC-------CCHHHhhhC
Confidence 79999999999999999999999965 52 321 138888874
No 5
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=76.26 E-value=1.2 Score=38.53 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=24.0
Q ss_pred CccchhhhhhhHHHHHhhcCceEeeC
Q psy11419 1 RFGNQADNFLGALALAKGINRTLVLP 26 (244)
Q Consensus 1 RFGNQadhFLG~LafAk~lNRTLVLP 26 (244)
.+|||+-++.-++++|+..||+|++.
T Consensus 14 GLGNqm~~~a~a~~~A~~t~r~l~vd 39 (330)
T 2hhc_A 14 GFGDCLWSLASAWSYAQRTGRTLVID 39 (330)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 37999999999999999999998875
No 6
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=58.28 E-value=3.8 Score=36.83 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=31.5
Q ss_pred CCCCCCCeeeeeeecCCCCCCCCCCCCCCCCCCcccccccceeecceeecc
Q psy11419 71 HIWPPHKRIAFCYMARGSTNESSCNAKEGNPFGPFWDTYGIDFVGSEFYGP 121 (244)
Q Consensus 71 ~~WP~~~R~~fC~~~r~~~~~~~C~aKeGNPFGpFWD~~~idFv~se~~~~ 121 (244)
..|.....+..|+....... .....-.| ||..+-+....++....+++.
T Consensus 129 ~~~~~k~~~~~c~~~~~~~~-~~~~~~~g-pfw~~~~v~~~~~~c~~~~~~ 177 (408)
T 4ap5_A 129 GTWEEKVDERPCIDQLLYSQ-DKHEYYRG-WFWGYEETRGLNVSCLSVQGS 177 (408)
T ss_dssp TCCCCCEEEECCSSCCSCEE-CTTSCEEC-CGGGCTTCEEEEEEEEEECSB
T ss_pred ccccchhhhhhhhhcccccc-ccccCccC-CcccccccccCCceeEEEeec
Confidence 35777777788876652211 12333455 888888888888776666664
No 7
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}
Probab=15.09 E-value=1.3e+02 Score=22.68 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeecCCCh
Q psy11419 211 ANQAKTFIKNKLPAGAYIGIHLRNGIDW 238 (244)
Q Consensus 211 ~~~a~~fI~~~L~~gpfvgIHLRng~DW 238 (244)
..++.+||.+.+..|.=|-||-+.|++-
T Consensus 70 ~~~~~~~i~~~~~~~~~VlVHC~aG~~R 97 (160)
T 1yz4_A 70 FKECINFIHCCRLNGGNCLVHSFAGISR 97 (160)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTSSSH
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCCCch
Confidence 3577789988775555588999999863
No 8
>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}
Probab=13.68 E-value=2.5e+02 Score=22.91 Aligned_cols=46 Identities=15% Similarity=0.376 Sum_probs=30.2
Q ss_pred ecccCCCCccccCCcccccccccccccceeeHHHHHHhhC--C-CCCCCCC
Q psy11419 30 EYRYGEPKSIQVPFDTYFQVEPLQEYHRVMTMEKFMQDIA--P-HIWPPHK 77 (244)
Q Consensus 30 eY~h~~~~sv~IPF~~yFqVepL~eYhRVI~MEeFM~~ia--p-~~WP~~~ 77 (244)
.|.....+-..||+.+||.+..+ .. ..|..++.-++|- | .+|||.+
T Consensus 75 Kydp~s~qmA~V~i~k~~~la~i-d~-~~v~~d~L~~~Ie~a~ygvWPp~~ 123 (124)
T 2g2q_A 75 KYNPQTKQMAFVDINKSLDFTKT-DK-SLVNLEILKSEIEKATYGVWPPVT 123 (124)
T ss_dssp EEETTTTEEEECCCGGGBCTTCC-SG-GGBCHHHHHHHHHHCCEECCC---
T ss_pred EEcCCCCcEEEEehhHeeeeeec-ch-hhccHHHHHHHHHhCCCCCCCCCC
Confidence 45433222357999999999998 33 6788888777773 3 4899754
No 9
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=13.29 E-value=1.1e+02 Score=25.95 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=25.5
Q ss_pred cccHHHHHHHHHHHHhhCCCCCeEEEEeecCCC-hhhhcC
Q psy11419 205 VWTEKIANQAKTFIKNKLPAGAYIGIHLRNGID-WPRLLG 243 (244)
Q Consensus 205 ~Ws~~i~~~a~~fI~~~L~~gpfvgIHLRng~D-W~raC~ 243 (244)
.++++..+.-++||++ .|.+||||-=...+ |.++++
T Consensus 81 ~l~~~~~~al~~~V~~---GgG~vgiH~a~~~~~y~~llG 117 (252)
T 1t0b_A 81 EVKDEVVERVHRRVLE---GMGLIVLHSGHFSKIFKKLMG 117 (252)
T ss_dssp GSCHHHHHHHHHHHHT---TCEEEEEGGGGGSHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHc---CCCEEEEcccCCcHHHHhhhC
Confidence 3788999999999986 47999999743322 444443
No 10
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=12.80 E-value=1.5e+02 Score=26.63 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=31.9
Q ss_pred ccccccHHHHHHHHHHHHhhCCCCCeEEEEeecCCChhhh
Q psy11419 202 KYLVWTEKIANQAKTFIKNKLPAGAYIGIHLRNGIDWPRL 241 (244)
Q Consensus 202 kYl~Ws~~i~~~a~~fI~~~L~~gpfvgIHLRng~DW~ra 241 (244)
-|-+..+++..-|..+.+.-+.+|--|||.+.|+.+|.-+
T Consensus 54 Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 93 (548)
T 2d1s_A 54 SYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIP 93 (548)
T ss_dssp EHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHH
T ss_pred eHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Confidence 4555556777778888887888899999999999999753
Done!