Query psy11419
Match_columns 244
No_of_seqs 82 out of 84
Neff 2.9
Searched_HMMs 13730
Date Fri Aug 16 17:56:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11419.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11419hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1np6a_ c.37.1.10 (A:) Molybdo 23.8 15 0.0011 25.1 1.5 12 179-190 2-13 (170)
2 d1ukza_ c.37.1.1 (A:) Uridylat 20.2 21 0.0015 25.7 1.8 28 179-207 8-35 (196)
3 d1ckea_ c.37.1.1 (A:) CMP kina 14.7 30 0.0022 24.5 1.5 12 179-190 3-14 (225)
4 d2ftsa1 b.85.6.1 (A:654-736) G 14.6 6.7 0.00049 26.9 -2.2 25 2-29 39-63 (83)
5 d1lcia_ e.23.1.1 (A:) Lucifera 14.1 65 0.0047 25.7 3.5 39 203-241 50-88 (541)
6 d1mdba_ e.23.1.1 (A:) Dihydrox 12.5 39 0.0029 26.9 1.7 39 202-240 52-90 (536)
7 d1rz3a_ c.37.1.6 (A:) Hypothet 12.1 49 0.0036 22.7 2.0 10 181-190 24-33 (198)
8 d1t0ba_ c.23.16.6 (A:) GK2113 11.8 64 0.0047 24.9 2.8 25 205-232 76-100 (240)
9 d1w4ta1 d.3.1.5 (A:1-277) Aryl 11.6 26 0.0019 28.0 0.3 40 39-86 38-77 (277)
10 d1czpa_ d.15.4.1 (A:) 2Fe-2S f 10.7 27 0.0019 24.2 0.1 13 232-244 31-43 (98)
No 1
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}
Probab=23.83 E-value=15 Score=25.08 Aligned_cols=12 Identities=33% Similarity=0.794 Sum_probs=10.0
Q ss_pred cceEEecCCCCC
Q psy11419 179 FPVIAFTGAPGS 190 (244)
Q Consensus 179 ~~VlAf~gAPas 190 (244)
.|||+++|-|+|
T Consensus 2 ~Pvi~itG~~GS 13 (170)
T d1np6a_ 2 IPLLAFAAWSGT 13 (170)
T ss_dssp CCEEEEECCTTS
T ss_pred CCEEEEEcCCCC
Confidence 579999998887
No 2
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.15 E-value=21 Score=25.72 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=19.7
Q ss_pred cceEEecCCCCCCCCcccccccccccccc
Q psy11419 179 FPVIAFTGAPGSFPVQDENRVLQKYLVWT 207 (244)
Q Consensus 179 ~~VlAf~gAPasFPv~~e~r~lqkYl~Ws 207 (244)
.|||.+.|+|+| =...--+.|.+++.|.
T Consensus 8 ~~iI~i~GppGS-GKsT~a~~La~~~g~~ 35 (196)
T d1ukza_ 8 VSVIFVLGGPGA-GKGTQCEKLVKDYSFV 35 (196)
T ss_dssp CEEEEEECSTTS-SHHHHHHHHHHHSSCE
T ss_pred CcEEEEECCCCC-CHHHHHHHHHHHhCCe
Confidence 459999999998 4444446677766663
No 3
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Probab=14.68 E-value=30 Score=24.55 Aligned_cols=12 Identities=42% Similarity=0.814 Sum_probs=10.1
Q ss_pred cceEEecCCCCC
Q psy11419 179 FPVIAFTGAPGS 190 (244)
Q Consensus 179 ~~VlAf~gAPas 190 (244)
-|||+..|.|||
T Consensus 3 ~piI~I~GppGS 14 (225)
T d1ckea_ 3 APVITIDGPSGA 14 (225)
T ss_dssp SCEEEEECCTTS
T ss_pred CCEEEEECCCCC
Confidence 379999999988
No 4
>d2ftsa1 b.85.6.1 (A:654-736) Gephyrin, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=14.59 E-value=6.7 Score=26.91 Aligned_cols=25 Identities=40% Similarity=0.587 Sum_probs=21.2
Q ss_pred ccchhhhhhhHHHHHhhcCceEeeCCee
Q psy11419 2 FGNQADNFLGALALAKGINRTLVLPPWV 29 (244)
Q Consensus 2 FGNQadhFLG~LafAk~lNRTLVLPPWi 29 (244)
+|||.-|-|++|+-|-+| ++|||-.
T Consensus 39 ~~~Q~S~~L~sl~~An~L---i~lP~~~ 63 (83)
T d2ftsa1 39 TGNQMSSRLMSMRSANGL---LMLPPKT 63 (83)
T ss_dssp CCSCSSSCCCCSSCCCEE---EEECCCC
T ss_pred CCCCccHHHHHHhhCCEE---EEcCCCC
Confidence 699999999999988555 8999863
No 5
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}
Probab=14.07 E-value=65 Score=25.65 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=30.8
Q ss_pred cccccHHHHHHHHHHHHhhCCCCCeEEEEeecCCChhhh
Q psy11419 203 YLVWTEKIANQAKTFIKNKLPAGAYIGIHLRNGIDWPRL 241 (244)
Q Consensus 203 Yl~Ws~~i~~~a~~fI~~~L~~gpfvgIHLRng~DW~ra 241 (244)
|-+-.+.+.+-|..+.+..+.+|--|+|.+.|.+||.-+
T Consensus 50 y~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~ 88 (541)
T d1lcia_ 50 YAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMP 88 (541)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHH
Confidence 434446777778788877799999999999999998643
No 6
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}
Probab=12.52 E-value=39 Score=26.90 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=32.4
Q ss_pred ccccccHHHHHHHHHHHHhhCCCCCeEEEEeecCCChhh
Q psy11419 202 KYLVWTEKIANQAKTFIKNKLPAGAYIGIHLRNGIDWPR 240 (244)
Q Consensus 202 kYl~Ws~~i~~~a~~fI~~~L~~gpfvgIHLRng~DW~r 240 (244)
-|-+..+++.+-|+.+.+.-+.+|--|+|.+.|+.||.=
T Consensus 52 Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v 90 (536)
T d1mdba_ 52 SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFE 90 (536)
T ss_dssp EHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHH
Confidence 455556788888888888889999999999999999864
No 7
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=12.10 E-value=49 Score=22.71 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=9.0
Q ss_pred eEEecCCCCC
Q psy11419 181 VIAFTGAPGS 190 (244)
Q Consensus 181 VlAf~gAPas 190 (244)
|||++|.+||
T Consensus 24 iIgI~G~~GS 33 (198)
T d1rz3a_ 24 VLGIDGLSRS 33 (198)
T ss_dssp EEEEEECTTS
T ss_pred EEEEECCCCC
Confidence 8899999998
No 8
>d1t0ba_ c.23.16.6 (A:) GK2113 homologue {Bacillus stearothermophilus [TaxId: 1422]}
Probab=11.75 E-value=64 Score=24.94 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=17.7
Q ss_pred cccHHHHHHHHHHHHhhCCCCCeEEEEe
Q psy11419 205 VWTEKIANQAKTFIKNKLPAGAYIGIHL 232 (244)
Q Consensus 205 ~Ws~~i~~~a~~fI~~~L~~gpfvgIHL 232 (244)
++++.-.+.-.+||++ .|+|||||-
T Consensus 76 ~l~~~q~~al~~~v~~---G~G~VglH~ 100 (240)
T d1t0ba_ 76 EVKDEVVERVHRRVLE---GMGLIVLHS 100 (240)
T ss_dssp GSCHHHHHHHHHHHHT---TCEEEEEGG
T ss_pred cCCHHHHHHHHHHHHc---CCCEEEEec
Confidence 3566666667777765 359999994
No 9
>d1w4ta1 d.3.1.5 (A:1-277) Arylamine N-acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.58 E-value=26 Score=28.00 Aligned_cols=40 Identities=15% Similarity=0.355 Sum_probs=30.6
Q ss_pred cccCCcccccccccccccceeeHHHHHHhhCCCCCCCCCeeeeeeecC
Q psy11419 39 IQVPFDTYFQVEPLQEYHRVMTMEKFMQDIAPHIWPPHKRIAFCYMAR 86 (244)
Q Consensus 39 v~IPF~~yFqVepL~eYhRVI~MEeFM~~iap~~WP~~~R~~fC~~~r 86 (244)
..|||++. +.+..-...|..++..++|.- .+|=||||+--
T Consensus 38 ~~iPfENL---~~~~g~~i~ld~~~l~~kiV~-----~~rGGyC~E~N 77 (277)
T d1w4ta1 38 RRVAFENL---DVLLDRPIEIDADKVFAKVVE-----GSRGGYCFELN 77 (277)
T ss_dssp HHSCEECH---HHHTTCCCCCSHHHHHHHHTT-----TTCCBCHHHHH
T ss_pred hcCCcCCc---chhcCCCCCCCHHHHHHHHHh-----cCCCccchhhh
Confidence 46999984 444444567789999999984 78999999764
No 10
>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}
Probab=10.74 E-value=27 Score=24.19 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=10.1
Q ss_pred eecCCChhhhcCC
Q psy11419 232 LRNGIDWPRLLGG 244 (244)
Q Consensus 232 LRng~DW~raC~~ 244 (244)
+|+||+|+..|.+
T Consensus 31 ~~~Gi~ip~~C~~ 43 (98)
T d1czpa_ 31 EEQGYDLPFSCRA 43 (98)
T ss_dssp HHTTCCCCCSSSS
T ss_pred HHcCCCeEEecCC
Confidence 4788999988853
Done!