RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11419
(244 letters)
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase;
glycosyltransferase, GT-B, catalytic mechanism,; HET:
GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A*
3zy5_A* 3zy6_A*
Length = 362
Score = 254 bits (649), Expect = 3e-84
Identities = 91/246 (36%), Positives = 136/246 (55%), Gaps = 44/246 (17%)
Query: 1 RFGNQADNFLGALALAKGINRTLVLPPWVEYRYGEPKSIQVPFDTYFQVEPLQEYHRVMT 60
RFGNQ D FLG LA AK ++RTLVLP ++E+++ ++ +PF+ FQV + +Y RV+T
Sbjct: 19 RFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKHP--ETKMIPFEFLFQVGTVAKYTRVVT 76
Query: 61 MEKFMQDIAPHIWPPHKRIAFCYMARGST----NESSCNAKEGNPFGPFWDTYGIDFVGS 116
M++F + I P +WPP KR AFC+ R + E C++KEGNPFGP+WD + FVG
Sbjct: 77 MQEFTKKIMPTVWPPEKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGD 136
Query: 117 EFYG--PLHYDVHHSDIAEHWKMRYPSDDWPVSGYCRTMGRTPSLAAIQTLNPLGKKSLS 174
E++G P +D++ + W ++PS+++
Sbjct: 137 EYFGDIPGGFDLNQMGSRKKWLEKFPSEEY------------------------------ 166
Query: 175 NFQCFPVIAFTGAPGSFPVQDENRVLQKYLVWTEKIANQAKTFIKNKLPAGAYIGIHLRN 234
PV+AF+ AP FP + + +QKYL W+ +I QAK FI L ++ +HLRN
Sbjct: 167 -----PVLAFSSAPAPFPSKGKVWSIQKYLRWSSRITEQAKKFISANLA-KPFVAVHLRN 220
Query: 235 GIDWPR 240
DW R
Sbjct: 221 DADWVR 226
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG;
3.00A {Homo sapiens} PDB: 4ap6_A*
Length = 408
Score = 140 bits (353), Expect = 2e-39
Identities = 30/265 (11%), Positives = 71/265 (26%), Gaps = 71/265 (26%)
Query: 2 FGNQADNFLGALALAKGINRT----LVLPPWVE---YRYGEPKSIQVPFDTYFQVEPLQE 54
F + D ++ +L K + +T LVLPPW ++ + +++P+ +F + L +
Sbjct: 35 FNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLNK 94
Query: 55 YHRVMTMEKFMQDIAPHI---------WPPHKRIAFCY--MARGSTNESSCNAKEGNPF- 102
V+ E+F+ + + + + + +++ + +
Sbjct: 95 NIPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYY 154
Query: 103 -GPFWD---TYGIDFVGSEFYGPLHYDVHHSDIAEHWKMRYPSDDWPVSGYCRTMGRTPS 158
G FW T G++ G + + V
Sbjct: 155 RGWFWGYEETRGLNVSCLSVQGSASIV--------APLLLRNTSARSV------------ 194
Query: 159 LAAIQTLNPLGKKSLSNFQCFPVIAFTGAPGSFPVQDENRV---LQKYLVWTEKIANQAK 215
A + ++ +V+ +
Sbjct: 195 ------------------------MLDRAENLLHDHYGGKEYWDTRRSMVFARHLREVGD 230
Query: 216 TFIKNKLPAGAYIGIHLRNGIDWPR 240
F L + DW +
Sbjct: 231 EFRSRHLN-STDDADRIPFQEDWMK 254
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.7 bits (131), Expect = 9e-09
Identities = 47/308 (15%), Positives = 80/308 (25%), Gaps = 139/308 (45%)
Query: 52 LQEYHRVMTMEKFMQ--DI---APHIWPPH-------KRIAFCY-MARGSTNESSCN--- 95
L E+ +++ DI A + + K + Y AR
Sbjct: 88 LTEFEN-----CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Query: 96 ------AKEGNP-----FG-------PF------WDTYG------IDFVGSEFYG----P 121
EGN FG F + TY I F
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 122 LHYDVHHS---DIAEHW---KMRYPSDDW----PVSG----------Y---CRTMGRTPS 158
L + + +I W P D+ P+S Y + +G TP
Sbjct: 203 LDAEKVFTQGLNI-LEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 159 ----------------LAAI--------QTLNPLGKKSLSN-F-------QCFPVIAFT- 185
+ A+ ++ +K+++ F + +P +
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 186 -----------GAPGS-FPVQDENRV-LQKYLVWTEKIANQAKTFIKNKLPAGAYIGIHL 232
G P + + + +Q Y+ N LPAG + I L
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYV----NKTNS-------HLPAGKQVEISL 370
Query: 233 RNGIDWPR 240
NG +
Sbjct: 371 VNG---AK 375
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.060
Identities = 35/293 (11%), Positives = 75/293 (25%), Gaps = 83/293 (28%)
Query: 4 NQADNFLGALALAKGINRTLVLPPWVEYRYGEPKSIQVPFDTYFQ-----VEPLQEYH-- 56
F+ L N ++ P + +P + + + +Y+
Sbjct: 77 EMVQKFVEE-VLRI--NYKFLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 57 R---VMTMEKFMQDIAPHIWPPHKRIAFCYMARGS-----TNESSCNAKE---GNPFGPF 105
R + + + + ++ P + + GS + C + + F F
Sbjct: 133 RLQPYLKLRQALLELRPAKN-----VLIDGVL-GSGKTWVALDV-CLSYKVQCKMDFKIF 185
Query: 106 WDTYG------------------IDFVGSEFYGPLHYDVHHSDIAEHWKMR------YPS 141
W ID + + R Y +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 142 -----DD-W------PVSGYCRTMGRTPSLAAIQTLNPLGKKSLSNFQCFPVIAFTGAPG 189
+ + C+ + T L+ +S + T
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS--LDHHSMTLT---- 299
Query: 190 SFPVQDENR-VLQKYL-VWTEKIANQAKTFIKNKLP-AGAYIGIHLRNGID-W 238
DE + +L KYL + + + T P + I +R+G+ W
Sbjct: 300 ----PDEVKSLLLKYLDCRPQDLPREVLTTN----PRRLSIIAESIRDGLATW 344
Score = 30.6 bits (68), Expect = 0.60
Identities = 24/181 (13%), Positives = 50/181 (27%), Gaps = 58/181 (32%)
Query: 66 QDIAPHIWPPHKRIAFCY----MARGSTNESSCN--AKEGNPFGP----FW--DTYGIDF 113
+DI C M + ++ + + FW + +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 114 VGSEFYGPLHYDVHHSDIAEHWKMRYPSDDWPVSGYCRTMGRTPSLAA---IQTLNPLGK 170
V +F +V + Y + +S +T R PS+ I+ + L
Sbjct: 79 V-QKFVE----EVLRIN--------YK---FLMSPI-KTEQRQPSMMTRMYIEQRDRL-- 119
Query: 171 KSLSNFQCFPVIAFTGAPGSFPVQDENRVLQKYLVWTEKIANQAKTFIKNKLPAGAYIGI 230
++N+V KY V + + + + +L + I
Sbjct: 120 -----------------------YNDNQVFAKYNVSRLQPYLKLRQALL-ELRPAKNVLI 155
Query: 231 H 231
Sbjct: 156 D 156
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase;
1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A*
3six_A*
Length = 330
Score = 31.0 bits (69), Expect = 0.35
Identities = 30/234 (12%), Positives = 66/234 (28%), Gaps = 69/234 (29%)
Query: 2 FGNQADNFLGALALAKGINRTLVLPPWVEYRYGEPKSIQVPFDTYFQVEPLQEYHRVMTM 61
FG+ + A + A+ RTLV+ W Y + F +F EP+++
Sbjct: 15 FGDCLWSLASAWSYAQRTGRTLVI-DWRGSCYV-EQPFSNAFPAFF--EPVEDI------ 64
Query: 62 EKFMQDIAPHIWPPHKRIAFCYMARGSTNESSCNAKEGNPFGPFWDTYGIDFVGSEFYGP 121
+ + + + G F +W+ ID +
Sbjct: 65 --------------------AGVPVICDDRVNQLSFPGPFFPRWWNRPSIDCINRPDEQI 104
Query: 122 LHYDVHHSDIAEHWKMRYPSDDWPVSGYCRTMGRTPSLAAIQTLNPLGKKSLSNFQCFPV 181
+++ + R S+ + M R
Sbjct: 105 FRERDELTELFQA---REDSEANTIVCDACLMWRCS------------------------ 137
Query: 182 IAFTGAPGSFPVQDENRVLQKYLVWTEKIANQAKTFIKNKLPAGAYIGIHLRNG 235
++ R++ + + +I + + + IG+H+R+G
Sbjct: 138 ------------EEAERLIFRNIKLRSEIRARIDALYEEHFSGHSIIGVHVRHG 179
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 27.9 bits (61), Expect = 3.6
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 2 FGNQADNFLGALALAKGINRTLVL-PPWVEYRYGEPKSIQVPFDTYFQVEPLQEYHRVM- 59
+G Q + + +A G RTL+L Y G +++ P
Sbjct: 158 YGCQLHHVVYCFMIAYGTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGISTGHWSG 217
Query: 60 -TMEKFMQDI-APHIWPPHKRIAFCYMA 85
+K +Q + P + H R + +A
Sbjct: 218 EVKDKNVQVVELPIVDSLHPRPPYLPLA 245
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.462
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,028,923
Number of extensions: 236799
Number of successful extensions: 443
Number of sequences better than 10.0: 1
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 19
Length of query: 244
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 153
Effective length of database: 4,160,982
Effective search space: 636630246
Effective search space used: 636630246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)