RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11419
         (244 letters)



>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter
           vinelandii [TaxId: 354]}
          Length = 136

 Score = 27.2 bits (59), Expect = 1.2
 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 2/68 (2%)

Query: 109 YGIDFVGSEFYGPLHYDVHHSDIAEHWKMRYPSDDWPVSGYCRTMGRTPSLAAIQTLNPL 168
             ++F  +    P       +DIA   +    + D  +  +C+T  R  S         L
Sbjct: 54  GAVNFEWTAAMDPSRALRIRTDIAGRLEELGITPDKEIVTHCQTHHR--SGLTYLIAKAL 111

Query: 169 GKKSLSNF 176
           G   +  +
Sbjct: 112 GYPRVKGY 119


>d2hhva2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment)
           {Bacillus stearothermophilus, newly identified strain as
           yet unnamed [TaxId: 1422]}
          Length = 408

 Score = 27.6 bits (60), Expect = 1.7
 Identities = 14/124 (11%), Positives = 36/124 (29%), Gaps = 4/124 (3%)

Query: 15  LAKGINRTLVLPPWVEYRYGEPKSIQVPFDTYFQVEPLQEYHRVMTMEKF----MQDIAP 70
           L   +   L LP   + + G   S  V        E ++       + K     ++ +  
Sbjct: 66  LGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLK 125

Query: 71  HIWPPHKRIAFCYMARGSTNESSCNAKEGNPFGPFWDTYGIDFVGSEFYGPLHYDVHHSD 130
            + P  K++   +    +      + +      P     G     +       + +  +D
Sbjct: 126 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 185

Query: 131 IAEH 134
            ++ 
Sbjct: 186 YSQI 189


>d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella typhimurium
           [TaxId: 90371]}
          Length = 257

 Score = 26.5 bits (58), Expect = 2.7
 Identities = 33/196 (16%), Positives = 62/196 (31%), Gaps = 36/196 (18%)

Query: 1   RFGNQADNFLGALA--LAKGINRTLVLP----PWVEYRY--GEPKSIQVPFDTYFQVEPL 52
           R G   D  L AL    A+G     +         EY     E + ++  F       PL
Sbjct: 53  RDGIDIDTPLQALQKLAAQGYQDVAIQSLHIINGDEYEKIVREVQLLRPLFTRLTLGVPL 112

Query: 53  QEYHRVMTMEKFMQDIAPHIWPPHKRIAFCYMARGSTNESSC---------NAKEGNPFG 103
              H      + MQ +   +    +     +M  G+++ +            A+      
Sbjct: 113 LSSHN--DYVQLMQALRQQMPSLRQTEKVVFMGHGASHHAFAAYACLDHMMTAQRFPARV 170

Query: 104 PFWDTY-GIDFVGSEF--YGPLHYDVH--------------HSDIAEHWKMRYPSDDWPV 146
              ++Y  +D +       G     +                SD  + WKMR+ +   P 
Sbjct: 171 GAVESYPEVDILIDSLRDEGVTGVHLMPLMLVAGDHAINDMASDDGDSWKMRFNAAGIPA 230

Query: 147 SGYCRTMGRTPSLAAI 162
           + +   +G  P++ A+
Sbjct: 231 TPWLSGLGENPAIRAM 246


>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor
           ectodomain, protease-like domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 294

 Score = 25.2 bits (54), Expect = 8.8
 Identities = 9/70 (12%), Positives = 16/70 (22%), Gaps = 2/70 (2%)

Query: 60  TMEKFMQDIAPHIWPPHKRIAFCYMARGSTNESSCNAKEGNPFGPFWDTYGIDFVGSEFY 119
            +   ++    ++  P            +           N   PF    GI  V   F 
Sbjct: 187 LLYTLIEKTMQNVKHPVTGQFLYQ--DSNWASKVEKLTLDNAAFPFLAYSGIPAVSFCFC 244

Query: 120 GPLHYDVHHS 129
               Y    +
Sbjct: 245 EDTDYPYLGT 254


>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
           sp. [TaxId: 512]}
          Length = 503

 Score = 25.0 bits (53), Expect = 9.7
 Identities = 11/104 (10%), Positives = 22/104 (21%)

Query: 53  QEYHRVMTMEKFMQDIAPHIWPPHKRIAFCYMARGSTNESSCNAKEGNPFGPFWDTYGID 112
            E   +    + M  +          +A  + +            E    G   +     
Sbjct: 298 GEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAA 357

Query: 113 FVGSEFYGPLHYDVHHSDIAEHWKMRYPSDDWPVSGYCRTMGRT 156
              +              + + W        W   G  R +GR 
Sbjct: 358 SDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRV 401


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.140    0.462 

Gapped
Lambda     K      H
   0.267   0.0419    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,009,091
Number of extensions: 48215
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 12
Length of query: 244
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,268,006
Effective search space: 204148966
Effective search space used: 204148966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)