BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1142
(442 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JKG|B Chain B, Structural Basis For The Recognition Of A Nucleoporin Fg-
Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Nuclear
Export Factor
pdb|1JN5|B Chain B, Structural Basis For The Recognition Of A Nucleoporin Fg-
Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Export
Factor
Length = 250
Score = 154 bits (389), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 142/254 (55%), Gaps = 8/254 (3%)
Query: 191 PKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV--TQGXXXXX 248
P +GS+ + ++ FL+QY+A++D+ R GL+DAYH+ A SL +
Sbjct: 2 PPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARS 61
Query: 249 XXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGL 308
SRN+ ++++P + LL + +++ L LP T+HD+ SF D T L
Sbjct: 62 SLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTL 121
Query: 309 IQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQAEKA 368
+ FSV G+++E+ +++ +RAF R F+ VP S G I ND+LF+ +A+ E+ ++A
Sbjct: 122 LCFSVNGVFKEVDGKSRDS---LRAFTRTFIAVPASNSGLCIVNDELFVRNASSEEIQRA 178
Query: 369 FSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFN 428
F+ + + S+PV +Q M++A S SGMNL +S+KCL + WDY ++ F
Sbjct: 179 FA---MPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFT 235
Query: 429 QLKAKNALPSEAFI 442
LKAK +P AF+
Sbjct: 236 HLKAKGEIPEVAFM 249
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 110/187 (58%), Gaps = 10/187 (5%)
Query: 11 IVLVSSATPYV---ELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLD 67
I++ SSA P+ EL E +++KL+M+KRY+G +ALDL +DPD V N+ V L+
Sbjct: 94 IIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLN 153
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIK---D 124
R + M + II EN+P+L +LNLS N+LY + + S+ + P +KIL L+ N +K +
Sbjct: 154 RRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE 213
Query: 125 LATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDL 184
L I+ N ++ F +Q Y S +R+ FPKLL+LD +LPPPI FD+
Sbjct: 214 LDKIKGLKLEELWLDG----NSLSDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDV 269
Query: 185 EDNIELP 191
E LP
Sbjct: 270 EAPTTLP 276
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 109/187 (58%), Gaps = 10/187 (5%)
Query: 11 IVLVSSATPYV---ELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLD 67
I++ SSA P+ EL E +++KL+M+KRY+G +ALDL +DPD V N+ V L+
Sbjct: 94 IIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLN 153
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIK---D 124
R + M + II EN+P+L +LNLS N+LY + + S+ + P +KIL L+ N +K +
Sbjct: 154 RRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE 213
Query: 125 LATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDL 184
L I+ N + F +Q Y S +R+ FPKLL+LD +LPPPI FD+
Sbjct: 214 LDKIKGLKLEELWLDG----NSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDV 269
Query: 185 EDNIELP 191
E LP
Sbjct: 270 EAPTTLP 276
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 108/187 (57%), Gaps = 10/187 (5%)
Query: 11 IVLVSSATPYV---ELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLD 67
I++ SSA P+ EL E +++KL+M+KRY+G + LDL +DPD V N+ V L+
Sbjct: 88 IIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQVLDLKGLRSDPDLVAQNIDVVLN 147
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIK---D 124
R + M + II EN+P+L +LNLS N+LY + + S+ + P +KIL L+ N +K +
Sbjct: 148 RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE 207
Query: 125 LATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDL 184
L I+ N + F +Q Y S +R+ FPKLL+LD +LPPPI FD+
Sbjct: 208 LDKIKG----LKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDV 263
Query: 185 EDNIELP 191
E LP
Sbjct: 264 EAPTTLP 270
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 108/187 (57%), Gaps = 10/187 (5%)
Query: 11 IVLVSSATPYV---ELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLD 67
I++ SSA P+ EL E +++KL+M+KRY+G + LDL +DPD V N+ V L+
Sbjct: 88 IIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQVLDLKGLRSDPDLVAQNIDVVLN 147
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIK---D 124
R + M + II EN+P+L +LNLS N+LY + + S+ + P +KIL L+ N +K +
Sbjct: 148 RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE 207
Query: 125 LATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDL 184
L I+ N + F +Q Y S +R+ FPKLL+LD +LPPPI FD+
Sbjct: 208 LDKIKG----LKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDV 263
Query: 185 EDNIELP 191
E LP
Sbjct: 264 EAPTTLP 270
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 104/178 (58%), Gaps = 10/178 (5%)
Query: 11 IVLVSSATPYV---ELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLD 67
I++ SSA P+ EL E +++KL+M+KRY+G +ALDL +DPD V N+ V L+
Sbjct: 94 IIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLN 153
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIK---D 124
R + M + II EN+P+L +LNLS N+LY + + S+ + P +KIL L+ N +K +
Sbjct: 154 RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE 213
Query: 125 LATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVF 182
L I+ N + F +Q Y S +R+ FPKLL+LD +LPPPI F
Sbjct: 214 LDKIKGLKLEELWLDG----NSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAF 267
>pdb|3NV0|A Chain A, Crystal Structure And Mutational Analysis Of The Nxf2NXT1
Heterodimeric Complex From Caenorhabditis Elegans At
1.84 A Resolution
Length = 205
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 16/190 (8%)
Query: 194 QGSFLCHPEARDILRAFLEQYFALFDT----ESRAGLIDAYHENAQY--SLVVTQGXXXX 247
+ + E R ++ F+ Y+ ++D ++R L+DAY N VV
Sbjct: 3 RNGYYGSDEVRTLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNSTFTHTVVCLWDPIK 62
Query: 248 XXXXXXXXXSRNLLRIEE--------PQRQKSLLSVGKADILRALRFLPATKHDLLSFTC 299
R LR + S +S G DI+ AL LPAT H + +F
Sbjct: 63 FVMYPDSESYRMYLRTSHNVLNQEYFAANRASRISHGAMDIVVALSRLPATIHLMDTFVV 122
Query: 300 DCPLYTPGLIQFSVCGLYEEITTGTK--NKSKLIRAFNRAFLLVPRSGGGFAITNDQLFI 357
D L + L+ F++ G + + + K N + F R F++ PR G AI +DQLFI
Sbjct: 123 DVFLVSATLLGFTLHGTFRDGPSAIKPENTEEHDNYFTRTFMVAPRGEGKVAIVSDQLFI 182
Query: 358 TSATPEQAEK 367
+S + + ++
Sbjct: 183 SSMSKRRGDQ 192
>pdb|1GO5|A Chain A, Structure Of The C-Terminal Fg-Binding Domain Of Human Tap
Length = 69
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%)
Query: 381 STPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQLKAKNALPSEA 440
S+PV +Q M++A S SGMNL +S+KCL + WDY ++ F LKAK +P A
Sbjct: 7 SSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVA 66
Query: 441 FI 442
F+
Sbjct: 67 FM 68
>pdb|1OAI|A Chain A, Complex Between Tap Uba Domain And Fxfg Nucleoporin
Peptide
Length = 59
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 391 KQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQLKAKNALPSEAFI 442
+Q M++A S SGMNL +S+KCL + WDY ++ F LKAK +P AF+
Sbjct: 7 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAFM 58
>pdb|1Q40|B Chain B, Crystal Structure Of The C. Albicans Mtr2-Mex67 M Domain
Complex
pdb|1Q40|D Chain D, Crystal Structure Of The C. Albicans Mtr2-Mex67 M Domain
Complex
Length = 219
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 92/218 (42%), Gaps = 44/218 (20%)
Query: 193 PQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV-----------T 241
P+ F ++R++ F+ Y L+D +R+ L Y +Q+S V
Sbjct: 3 PETXFFQDEDSRNLATNFIANYLKLWDA-NRSELXILYQNESQFSXQVDSSHPHLIESGN 61
Query: 242 QGXXXXXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLS----F 297
G SRNL R+ + + + LS+G+ I ++ + LP T+HD+++ F
Sbjct: 62 SGYSGSTDFGYYLNNSRNLTRVSSIKARXAKLSIGQEQIYKSFQQLPKTRHDIIATPELF 121
Query: 298 TCDCPLY-TPGLIQFSVCGLYEEIT------------TGTKNKSKLI------------R 332
+ + + T I ++ G ++E+ +G + S+ +
Sbjct: 122 SXEVYKFPTLNGIXITLHGSFDEVAQPEVDGSASSAPSGPRGGSRYHSGPKHKRIPLSKK 181
Query: 333 AFNRAFLLVPRSGGGFAITNDQLFI---TSATPEQAEK 367
+F+R F+++P G + +D L I TS P + +K
Sbjct: 182 SFDRTFVVIPGPNGSXIVASDTLLIRPYTSDFPWKVQK 219
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 281 LRALRFLPATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGT 324
LR ++++ + ++ + T D L + GL QF CG+ E++ G
Sbjct: 256 LRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGA 299
>pdb|1OF5|A Chain A, Crystal Structure Of Mex67-mtr2
Length = 221
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 30/116 (25%)
Query: 257 SRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYT---PGLIQFSV 313
SRN+ ++ + + LS+G+ I + LP TKH L + + T P + F +
Sbjct: 71 SRNISKVSSEKSIQQRLSIGQESINSIFKTLPKTKHHLQEQPNEYSMETISYPQINGFVI 130
Query: 314 C--GLYEEIT---------TGTKNKSKLIR----------------AFNRAFLLVP 342
G +EE TG N K R +F+R +++VP
Sbjct: 131 TLHGFFEETGKPELESNKKTGKNNYQKNRRYNHGYNSTSNNKLSKKSFDRTWVIVP 186
>pdb|1E5P|A Chain A, Crystal Structure Of Aphrodisin, A Sex Pheromone From
Female Hamster
pdb|1E5P|B Chain B, Crystal Structure Of Aphrodisin, A Sex Pheromone From
Female Hamster
pdb|1E5P|C Chain C, Crystal Structure Of Aphrodisin, A Sex Pheromone From
Female Hamster
pdb|1E5P|D Chain D, Crystal Structure Of Aphrodisin, A Sex Pheromone From
Female Hamster
Length = 151
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 350 ITNDQLFITSATPEQAEKAFSSQVTASESTCSTPVSNEILIK 391
IT+D++F T+ ++A + + V A + TP NEIL++
Sbjct: 87 ITSDKIFFTNKNXDRAGQETNXIVVAGKGNALTPEENEILVQ 128
>pdb|4I43|B Chain B, Crystal Structure Of Prp8:aar2 Complex
Length = 1564
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 157 YTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNI 188
Y ++ RK+FP +K D ++PP +V+ I
Sbjct: 152 YEADQRKLFPNWIKPSDSEIPPLLVYKWTQGI 183
>pdb|3ZEF|B Chain B, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
pdb|3ZEF|E Chain E, Crystal Structure Of Prp8:aar2 Complex: Second Crystal
Form At 3.1 Angstrom Resolution
Length = 1531
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 157 YTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNI 188
Y ++ RK+FP +K D ++PP +V+ I
Sbjct: 119 YEADQRKLFPNWIKPSDSEIPPLLVYKWTQGI 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,218,923
Number of Sequences: 62578
Number of extensions: 413773
Number of successful extensions: 1151
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1125
Number of HSP's gapped (non-prelim): 20
length of query: 442
length of database: 14,973,337
effective HSP length: 102
effective length of query: 340
effective length of database: 8,590,381
effective search space: 2920729540
effective search space used: 2920729540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)