Query psy1142
Match_columns 442
No_of_seqs 300 out of 1907
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 17:57:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3763|consensus 100.0 3.7E-97 8E-102 750.9 28.3 435 1-441 131-585 (585)
2 smart00804 TAP_C C-terminal do 99.9 5.7E-24 1.2E-28 160.1 7.8 55 388-442 9-63 (63)
3 PF03943 TAP_C: TAP C-terminal 99.9 5.2E-24 1.1E-28 154.2 3.0 51 392-442 1-51 (51)
4 KOG2104|consensus 99.9 1.1E-21 2.3E-26 161.5 11.4 114 204-358 7-122 (126)
5 cd00780 NTF2 Nuclear transport 99.8 1.1E-20 2.5E-25 162.2 12.0 115 203-358 2-118 (119)
6 PF02136 NTF2: Nuclear transpo 99.8 5.2E-19 1.1E-23 151.1 8.2 114 206-357 1-118 (118)
7 KOG4353|consensus 99.5 2E-14 4.3E-19 120.4 8.9 118 201-360 10-137 (139)
8 PF14580 LRR_9: Leucine-rich r 99.5 6E-15 1.3E-19 134.8 5.4 96 81-182 61-156 (175)
9 KOG2123|consensus 99.4 8.3E-14 1.8E-18 132.8 0.1 93 81-179 38-130 (388)
10 KOG1644|consensus 99.2 3.5E-12 7.6E-17 116.8 2.0 92 81-178 61-152 (233)
11 KOG0116|consensus 99.1 2.7E-10 5.7E-15 116.5 9.4 120 203-359 13-134 (419)
12 KOG2739|consensus 98.8 2.6E-09 5.7E-14 101.6 4.7 94 81-178 62-155 (260)
13 KOG1259|consensus 98.6 1.1E-08 2.4E-13 99.1 1.5 138 22-175 290-438 (490)
14 PF13855 LRR_8: Leucine rich r 98.4 1.7E-07 3.8E-12 70.3 3.0 61 84-147 1-61 (61)
15 PF14580 LRR_9: Leucine-rich r 98.4 1.8E-07 3.9E-12 85.6 2.6 83 82-176 40-125 (175)
16 PF12799 LRR_4: Leucine Rich r 98.2 9.3E-07 2E-11 62.1 3.3 42 84-129 1-43 (44)
17 KOG2982|consensus 98.2 2.3E-06 4.9E-11 83.2 6.3 104 72-178 188-291 (418)
18 cd00531 NTF2_like Nuclear tran 98.2 2.2E-05 4.7E-10 65.3 10.5 117 208-357 2-123 (124)
19 PF14555 UBA_4: UBA-like domai 98.1 4.7E-06 1E-10 58.3 5.2 38 392-429 1-38 (43)
20 KOG1859|consensus 98.1 3.2E-07 7E-12 97.8 -1.4 85 86-178 234-323 (1096)
21 KOG3207|consensus 98.0 1.2E-06 2.7E-11 88.7 -0.9 99 83-184 270-372 (505)
22 PF12799 LRR_4: Leucine Rich r 97.9 2.3E-05 5E-10 55.0 4.3 38 110-149 1-38 (44)
23 KOG3207|consensus 97.6 2E-05 4.4E-10 80.1 1.9 87 81-173 143-229 (505)
24 KOG0472|consensus 97.4 0.00012 2.5E-09 74.1 3.2 97 42-149 215-311 (565)
25 KOG1644|consensus 97.4 0.00015 3.2E-09 67.2 3.5 77 83-171 41-118 (233)
26 cd00116 LRR_RI Leucine-rich re 97.3 0.0015 3.2E-08 64.5 10.8 41 84-124 193-235 (319)
27 cd00116 LRR_RI Leucine-rich re 97.3 0.0011 2.4E-08 65.4 9.6 65 84-149 108-179 (319)
28 KOG0531|consensus 97.3 0.00011 2.4E-09 76.4 2.0 62 81-149 92-154 (414)
29 KOG1259|consensus 97.2 0.00016 3.4E-09 70.7 2.2 61 83-149 306-366 (490)
30 KOG4194|consensus 97.2 0.00015 3.3E-09 76.3 2.1 80 84-173 149-228 (873)
31 KOG3665|consensus 97.2 0.0003 6.6E-09 77.5 4.3 143 26-173 107-257 (699)
32 KOG4579|consensus 97.1 9.3E-05 2E-09 64.7 -0.3 63 83-149 52-114 (177)
33 PF13855 LRR_8: Leucine rich r 97.1 0.00011 2.4E-09 54.9 -0.1 55 110-172 1-55 (61)
34 PRK15387 E3 ubiquitin-protein 97.0 0.00071 1.5E-08 75.3 5.3 111 27-149 191-316 (788)
35 KOG0618|consensus 97.0 0.0001 2.3E-09 81.0 -1.7 65 82-149 357-421 (1081)
36 KOG1859|consensus 96.7 0.00034 7.4E-09 75.3 -0.2 63 81-149 184-246 (1096)
37 PLN00113 leucine-rich repeat r 96.7 0.0037 8E-08 71.8 7.7 64 83-149 139-202 (968)
38 PF10429 Mtr2: Nuclear pore RN 96.6 0.003 6.5E-08 56.4 5.0 83 205-320 5-93 (166)
39 KOG4194|consensus 96.6 0.0015 3.4E-08 69.0 3.6 65 81-149 99-163 (873)
40 KOG0617|consensus 96.6 0.00027 5.8E-09 64.1 -2.2 78 84-174 33-110 (264)
41 KOG2982|consensus 96.5 0.00099 2.1E-08 65.2 1.5 63 83-147 70-133 (418)
42 KOG0444|consensus 96.5 0.00078 1.7E-08 71.6 0.6 61 85-149 127-187 (1255)
43 KOG0531|consensus 96.5 0.00098 2.1E-08 69.3 1.0 62 81-149 115-176 (414)
44 TIGR02246 conserved hypothetic 96.2 0.049 1.1E-06 46.1 10.1 117 204-358 3-126 (128)
45 KOG0444|consensus 96.1 0.00074 1.6E-08 71.8 -2.0 62 82-149 220-282 (1255)
46 KOG0618|consensus 96.1 0.0032 7E-08 69.7 2.7 39 108-147 450-488 (1081)
47 KOG4237|consensus 96.1 0.0017 3.8E-08 65.7 0.3 68 79-149 61-130 (498)
48 PLN03150 hypothetical protein; 96.1 0.012 2.6E-07 64.6 6.8 65 82-150 440-505 (623)
49 PF13474 SnoaL_3: SnoaL-like d 96.0 0.039 8.4E-07 46.0 8.5 113 207-356 1-117 (121)
50 PLN00113 leucine-rich repeat r 96.0 0.0069 1.5E-07 69.6 4.8 64 83-149 498-561 (968)
51 KOG4237|consensus 95.9 0.0027 5.9E-08 64.3 1.0 64 81-149 271-336 (498)
52 PLN03150 hypothetical protein; 95.8 0.013 2.9E-07 64.2 5.9 77 85-172 419-496 (623)
53 KOG2739|consensus 95.8 0.0051 1.1E-07 59.2 2.2 87 81-177 40-127 (260)
54 KOG3665|consensus 95.8 0.0085 1.8E-07 66.3 4.3 136 72-220 136-276 (699)
55 KOG0617|consensus 95.7 0.0038 8.2E-08 56.8 0.8 62 83-150 55-117 (264)
56 PRK15387 E3 ubiquitin-protein 95.7 0.0081 1.7E-07 67.0 3.5 59 85-149 383-459 (788)
57 KOG2123|consensus 95.5 0.0022 4.7E-08 62.4 -1.6 76 83-171 18-93 (388)
58 KOG1909|consensus 95.3 0.032 6.9E-07 55.9 5.9 149 22-177 103-283 (382)
59 KOG0472|consensus 95.2 0.016 3.5E-07 59.1 3.4 60 86-149 483-542 (565)
60 PRK15370 E3 ubiquitin-protein 95.0 0.062 1.4E-06 60.1 7.7 57 84-149 220-276 (754)
61 COG4886 Leucine-rich repeat (L 94.9 0.017 3.6E-07 59.3 2.8 62 83-149 115-177 (394)
62 COG4886 Leucine-rich repeat (L 93.6 0.031 6.6E-07 57.4 1.3 59 85-149 141-200 (394)
63 PF15008 DUF4518: Domain of un 93.5 0.37 8E-06 46.8 8.5 128 200-359 124-260 (262)
64 KOG4579|consensus 93.2 0.019 4.2E-07 50.5 -0.7 86 81-178 74-160 (177)
65 PRK15370 E3 ubiquitin-protein 93.2 0.074 1.6E-06 59.5 3.8 57 84-149 325-381 (754)
66 PF00627 UBA: UBA/TS-N domain; 92.4 0.38 8.3E-06 32.1 5.0 33 392-425 3-35 (37)
67 smart00365 LRR_SD22 Leucine-ri 92.4 0.091 2E-06 32.5 1.7 20 110-129 2-21 (26)
68 PF13504 LRR_7: Leucine rich r 92.1 0.1 2.2E-06 28.8 1.5 15 110-124 1-15 (17)
69 PLN03210 Resistant to P. syrin 91.8 0.25 5.4E-06 58.2 5.8 59 84-148 611-670 (1153)
70 KOG3864|consensus 91.0 0.085 1.8E-06 49.2 0.7 80 86-173 103-183 (221)
71 KOG1909|consensus 90.6 0.39 8.5E-06 48.3 5.0 87 84-173 157-248 (382)
72 smart00446 LRRcap occurring C- 90.4 0.2 4.3E-06 30.9 1.7 22 155-176 2-23 (26)
73 KOG2120|consensus 90.3 0.28 6.2E-06 48.5 3.7 101 43-147 212-325 (419)
74 smart00165 UBA Ubiquitin assoc 90.1 0.75 1.6E-05 30.5 4.6 32 394-426 4-35 (37)
75 PF13577 SnoaL_4: SnoaL-like d 90.0 0.74 1.6E-05 38.6 5.7 70 204-301 6-79 (127)
76 PF13504 LRR_7: Leucine rich r 89.9 0.15 3.4E-06 28.1 0.9 16 84-99 1-16 (17)
77 PF14534 DUF4440: Domain of un 88.6 1.2 2.7E-05 35.6 5.9 106 208-350 2-107 (107)
78 PLN03210 Resistant to P. syrin 88.3 0.68 1.5E-05 54.6 5.6 59 82-149 800-860 (1153)
79 cd00194 UBA Ubiquitin Associat 87.9 1.6 3.4E-05 29.0 5.0 33 394-427 4-36 (38)
80 PF12680 SnoaL_2: SnoaL-like d 87.8 1 2.2E-05 35.6 4.8 48 211-289 1-48 (102)
81 smart00370 LRR Leucine-rich re 87.6 0.46 9.9E-06 28.9 2.0 17 110-126 2-18 (26)
82 smart00369 LRR_TYP Leucine-ric 87.6 0.46 9.9E-06 28.9 2.0 17 110-126 2-18 (26)
83 KOG2120|consensus 87.3 0.86 1.9E-05 45.2 4.7 95 72-175 277-372 (419)
84 smart00365 LRR_SD22 Leucine-ri 87.0 0.5 1.1E-05 29.2 1.9 20 84-103 2-21 (26)
85 KOG0532|consensus 86.1 0.24 5.3E-06 52.7 0.3 59 85-149 190-248 (722)
86 KOG1947|consensus 85.8 1.1 2.4E-05 46.5 5.0 63 84-147 243-307 (482)
87 PF00560 LRR_1: Leucine Rich R 84.7 0.38 8.1E-06 28.2 0.5 16 111-126 1-16 (22)
88 smart00369 LRR_TYP Leucine-ric 83.8 0.94 2E-05 27.4 2.1 19 83-101 1-19 (26)
89 smart00370 LRR Leucine-rich re 83.8 0.94 2E-05 27.4 2.1 19 83-101 1-19 (26)
90 KOG3864|consensus 81.0 0.91 2E-05 42.5 1.7 88 81-171 122-209 (221)
91 PF02845 CUE: CUE domain; Int 80.9 5 0.00011 27.4 5.1 39 392-430 2-41 (42)
92 KOG4658|consensus 79.5 1 2.2E-05 51.5 1.8 82 82-175 569-651 (889)
93 cd00781 ketosteroid_isomerase 79.4 4.2 9.2E-05 33.9 5.3 56 206-290 4-59 (122)
94 smart00364 LRR_BAC Leucine-ric 79.3 1.3 2.8E-05 27.4 1.5 17 85-101 3-19 (26)
95 smart00364 LRR_BAC Leucine-ric 78.9 1.2 2.6E-05 27.5 1.2 21 110-130 2-22 (26)
96 KOG3763|consensus 77.5 1.2 2.6E-05 47.5 1.5 42 104-145 212-254 (585)
97 smart00546 CUE Domain that may 77.4 6.8 0.00015 26.9 4.9 37 393-429 4-41 (43)
98 COG5238 RNA1 Ran GTPase-activa 76.5 2.6 5.7E-05 41.4 3.4 42 108-149 212-256 (388)
99 PF13516 LRR_6: Leucine Rich r 75.6 1.6 3.6E-05 25.8 1.2 15 110-124 2-16 (24)
100 smart00368 LRR_RI Leucine rich 73.9 2.2 4.9E-05 26.5 1.5 15 110-124 2-16 (28)
101 COG5238 RNA1 Ran GTPase-activa 73.0 19 0.0004 35.7 8.2 69 81-149 89-171 (388)
102 KOG1947|consensus 72.4 5.4 0.00012 41.3 4.9 61 106-173 239-302 (482)
103 PF12893 Lumazine_bd_2: Putati 72.3 34 0.00073 28.5 8.9 33 205-237 4-36 (116)
104 COG4319 Ketosteroid isomerase 72.2 68 0.0015 28.2 10.9 111 211-354 16-128 (137)
105 TIGR02096 conserved hypothetic 72.0 11 0.00024 31.5 6.0 27 211-237 4-30 (129)
106 PRK06369 nac nascent polypepti 70.8 11 0.00023 32.1 5.4 35 393-427 78-112 (115)
107 PF10213 MRP-S28: Mitochondria 70.7 7.7 0.00017 33.6 4.7 44 4-50 23-67 (127)
108 PRK15386 type III secretion pr 70.7 10 0.00022 39.6 6.3 11 41-51 52-62 (426)
109 KOG1071|consensus 66.1 11 0.00024 37.6 5.1 41 389-429 44-84 (340)
110 TIGR00264 alpha-NAC-related pr 65.3 16 0.00034 31.1 5.2 35 393-427 80-114 (116)
111 KOG0532|consensus 63.9 3 6.5E-05 44.8 0.9 81 86-178 145-248 (722)
112 KOG4341|consensus 60.6 3 6.5E-05 43.1 0.2 88 84-176 138-226 (483)
113 KOG4618|consensus 59.6 13 0.00029 28.4 3.4 25 407-431 29-53 (74)
114 TIGR00864 PCC polycystin catio 57.9 6.8 0.00015 49.3 2.5 31 90-122 1-31 (2740)
115 TIGR03231 anthran_1_2_B anthra 49.5 1.9E+02 0.0041 25.7 10.7 137 207-360 1-144 (155)
116 PRK15386 type III secretion pr 48.2 21 0.00046 37.3 4.0 31 83-119 51-81 (426)
117 KOG4658|consensus 46.5 13 0.00029 42.7 2.4 85 81-177 542-629 (889)
118 KOG0473|consensus 45.9 2.5 5.4E-05 40.7 -2.9 62 83-148 41-124 (326)
119 COG5517 Small subunit of pheny 40.4 2.8E+02 0.006 25.0 10.7 140 200-360 3-153 (164)
120 KOG4341|consensus 39.9 20 0.00043 37.3 2.3 45 105-149 367-415 (483)
121 cd06480 ACD_HspB8_like Alpha-c 39.0 42 0.00091 27.3 3.6 42 297-341 19-67 (91)
122 KOG4308|consensus 35.5 12 0.00026 39.9 -0.2 26 24-51 157-182 (478)
123 COG3631 Ketosteroid isomerase- 35.1 3E+02 0.0066 23.9 9.6 69 209-302 8-76 (133)
124 KOG4308|consensus 34.8 8.7 0.00019 40.9 -1.3 87 83-173 203-297 (478)
125 KOG3591|consensus 34.2 60 0.0013 29.7 4.2 66 297-363 76-150 (173)
126 PF08332 CaMKII_AD: Calcium/ca 32.0 3.4E+02 0.0073 23.5 10.5 55 205-288 3-58 (128)
127 KOG3933|consensus 31.5 86 0.0019 30.9 5.0 46 2-49 163-208 (296)
128 PF03793 PASTA: PASTA domain; 31.0 28 0.0006 25.5 1.3 20 401-420 6-25 (63)
129 TIGR00756 PPR pentatricopeptid 30.9 54 0.0012 19.9 2.5 21 417-437 13-33 (35)
130 PF08991 DUF1903: Domain of un 28.8 27 0.00058 26.8 0.8 25 408-432 10-34 (67)
131 COG4008 Predicted metal-bindin 28.7 1.1E+02 0.0024 26.4 4.6 33 394-428 117-149 (153)
132 COG1308 EGD2 Transcription fac 28.5 99 0.0022 26.6 4.3 34 393-426 86-119 (122)
133 cd00667 ring_hydroxylating_dio 26.3 4.4E+02 0.0094 23.0 13.5 38 203-240 2-39 (160)
134 PF13306 LRR_5: Leucine rich r 25.9 1E+02 0.0022 25.4 4.1 57 84-145 35-91 (129)
135 TIGR00864 PCC polycystin catio 25.7 47 0.001 42.4 2.6 31 116-147 1-31 (2740)
136 PRK10069 3-phenylpropionate di 25.5 5.1E+02 0.011 23.5 12.2 38 201-238 16-53 (183)
137 TIGR02960 SigX5 RNA polymerase 25.2 92 0.002 30.8 4.3 52 207-287 206-257 (324)
138 PRK15466 carboxysome structura 24.9 4.9E+02 0.011 23.6 8.2 47 388-437 108-155 (166)
139 PF13041 PPR_2: PPR repeat fam 24.4 80 0.0017 21.7 2.7 23 417-440 16-38 (50)
140 cd06479 ACD_HspB7_like Alpha c 23.9 1.4E+02 0.0031 23.5 4.2 37 298-340 13-56 (81)
141 PF13812 PPR_3: Pentatricopept 23.9 82 0.0018 19.2 2.4 17 418-434 15-31 (34)
142 cd06477 ACD_HspB3_Like Alpha c 22.5 1E+02 0.0022 24.5 3.2 30 330-359 48-81 (83)
143 TIGR03232 benzo_1_2_benB benzo 22.4 5.5E+02 0.012 22.8 10.5 137 208-361 2-145 (155)
144 smart00367 LRR_CC Leucine-rich 21.5 59 0.0013 19.4 1.3 11 136-146 3-13 (26)
145 PRK08241 RNA polymerase factor 21.1 1.7E+02 0.0037 29.2 5.3 56 205-289 214-269 (339)
No 1
>KOG3763|consensus
Probab=100.00 E-value=3.7e-97 Score=750.95 Aligned_cols=435 Identities=34% Similarity=0.602 Sum_probs=401.9
Q ss_pred CcccCCCCEEEEEEeC-CCCCc---cCCHHHHHHHHHHHhhcCCcccceEeCCCCCCCccccccCccccCCchhHHHHHH
Q psy1142 1 RIKTVTNHTLIVLVSS-ATPYV---ELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLDRSNVMTSVC 76 (442)
Q Consensus 1 ~i~~~~~~k~~i~v~~-~~P~~---~~~~~~~~~l~~~l~~ry~~~~~~LdLs~l~~dp~L~~~~i~~~ln~~~~~~~~l 76 (442)
+|.++.+.++.|++.+ .+|.+ +++++++|.|+.+|.+||+++++.|||++|+.||+|+..|+++.++++++|.+++
T Consensus 131 r~~~~~n~~~~i~~~~sn~~~~~~~~lkpe~IE~l~~v~~kRyd~~~~~LDL~nl~~DPel~~~di~~~l~~rn~M~~~L 210 (585)
T KOG3763|consen 131 RIVDEENSSISIFVNPSNIPASVHNKLKPEEIEILKLVMNKRYDVSQQALDLQNLRFDPELVNRDILMVLNKRNCMAAVL 210 (585)
T ss_pred hhccccCcceeEEeccCCCCchhhcccCHHHHHHHHHHHhccccHHHhhhhhhccccChhhhhccchhhcccchhhHHHH
Confidence 5788999999999999 88888 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCC--CCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCc
Q psy1142 77 NIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHN--NIKDLATIRTLESLSNLEELRLEKNPWTECFNEQ 154 (442)
Q Consensus 77 ~i~~~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N--~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~ 154 (442)
+++.+++|.+.+|+||+|+|++|+.+++|++.+|+|++|+||+| .|.+..|+.+++++ +|+||+|+|||||++|.+.
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc~tf~~~ 289 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLCTTFSDR 289 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCccccchhhh
Confidence 99999999999999999999999999999999999999999999 99999999999999 9999999999999999999
Q ss_pred hhhHHHHHhhCCcccccCCccCCCcccccccCCCCCCCCCCCCcCChhhHHHHHHHHHHHhhcccccChhhHHhccccCc
Q psy1142 155 DAYTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENA 234 (442)
Q Consensus 155 ~~y~~~i~~~fP~L~~LDg~~v~~~~~~~~~~~~~~P~~~~~f~~~~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a 234 (442)
..|++.|++.||+|.+|||++|++++. |++...++++++++|||+++++++|++|+++||.+||+++|+.+..+||++|
T Consensus 290 s~yv~~i~~~FPKL~~LDG~ev~~~~~-d~~~~~~~~p~k~~ff~~~~l~~LV~~Fl~~y~~~yD~~d~q~~~~~y~dns 368 (585)
T KOG3763|consen 290 SEYVSAIRELFPKLLRLDGVEVQPEVI-DINASETPMPCKQNFFGSEELKQLVLQFLQQYYKIYDNNDGQLLLYAYHDNS 368 (585)
T ss_pred HHHHHHHHHhcchheeecCcccCcccc-ccccccCCcchhhcccCchHHHHHHHHHHHHHHHhhcCchhhhHHhhcCccc
Confidence 999999999999999999999998776 7777677777999999999999999999999999999988888999999999
Q ss_pred eEEEEeecCCCC---C-cchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHhCCCCccCCCCeeeeecCCCCCeEE
Q psy1142 235 QYSLVVTQGLGN---N-HLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGLIQ 310 (442)
Q Consensus 235 ~fSls~~~~~~~---~-~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~LP~t~H~~~sf~vD~~~~~~~~l~ 310 (442)
|||+|+++.+.+ + +.|+.|+++|||+++++++..|.+++++|+++|+..|+.||+|+||+++|+||+|.++..+++
T Consensus 369 ~FSlsi~~~~~~s~~~~~~~~~Y~k~SRNi~~l~~~~~r~srl~~g~~~Iv~aLs~LPkT~Hdl~s~vvDv~~~~~~~l~ 448 (585)
T KOG3763|consen 369 TFSLTINFLPVPSHPDPSSLGKYFKDSRNILKLKDPYLRASRLKHGACDIVVALSALPKTQHDLDSFVVDVWYQTGNLLG 448 (585)
T ss_pred eeEEEecccCCCCCCchHHHHHHHhhcchhhhhcCHHHHHHhhhccchHHHHHHHhCccchhhhhhhheeeeecccceEE
Confidence 999999998433 1 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeEEEecCCCCCCCCCeee---EEEEEEEEeCCCCceEEEcceeEeecCChhHHhhhhccccCCCCCCCCCCCc--
Q psy1142 311 FSVCGLYEEITTGTKNKSKLIRA---FNRAFLLVPRSGGGFAITNDQLFITSATPEQAEKAFSSQVTASESTCSTPVS-- 385 (442)
Q Consensus 311 i~V~G~f~e~~~~~~~~~~~~r~---F~RtFvl~p~~~~~~~I~ND~l~ir~~s~~~~~~~~~~~~~~p~~~~~~p~~-- 385 (442)
|+|||.|+|. +| .+ ....++ |+|||+++|.+++|.+|+||+|+|+..+....+.++..++|++.+++ +|..
T Consensus 449 ftv~G~f~d~-~g-~~-~~s~~~~~~FtRtfvv~P~~ns~l~iv~d~Lfi~~~s~~~~~~~~~~~~~ta~ss~-~P~~s~ 524 (585)
T KOG3763|consen 449 FTVAGVFRDG-EG-QN-SPSNRALLGFTRTFVVTPRENSGLAIVNDQLFIASASLHRTQPSKALIVPTAFSSS-VPQPSE 524 (585)
T ss_pred EEEEEEeecC-Cc-cC-CcccccccccceEEEEeeCCCCceEEEeceeEEeeccccccccccccccccccccC-CCCCcc
Confidence 9999999987 56 33 456566 99999999999889999999999999999888877777766544443 4432
Q ss_pred -----hhhHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCcccc
Q psy1142 386 -----NEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQLKAKNALPSEAF 441 (442)
Q Consensus 386 -----~~~~~q~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~~~iP~eAF 441 (442)
.+....++|+.+|+++||||.+||+||||||+|||++|++.|.++|+.+.||++||
T Consensus 525 ~qq~~~~~~~~~e~l~~~~~~tGln~~~s~~c~e~~nWdy~~A~k~F~~~ks~~~ipa~Af 585 (585)
T KOG3763|consen 525 EQQEELSVDVTDEKLLKFQEETGLNSEWSTMCLEQNNWDYERALKLFIELKSDHPIPAFAF 585 (585)
T ss_pred ccchhcccchHHHHHHHHHHHhcCChHHHHHHHHHccCCHHHHHHHHHHhhcCCCCccccC
Confidence 01112377899999999999999999999999999999999999999999999998
No 2
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=99.90 E-value=5.7e-24 Score=160.13 Aligned_cols=55 Identities=40% Similarity=0.782 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCccccC
Q psy1142 388 ILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQLKAKNALPSEAFI 442 (442)
Q Consensus 388 ~~~q~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~~~iP~eAF~ 442 (442)
+++|++||.+|+++||||++||+||||+|||||++|+++|++||++|+||+|||+
T Consensus 9 ~~~q~~~v~~~~~~Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~lk~~~~IP~eAF~ 63 (63)
T smart00804 9 SPEQQEMVQAFSAQTGMNAEYSQMCLEDNNWDYERALKNFTELKSEGSIPPEAFA 63 (63)
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCChhhcC
Confidence 8899999999999999999999999999999999999999999999999999995
No 3
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=99.89 E-value=5.2e-24 Score=154.20 Aligned_cols=51 Identities=51% Similarity=0.968 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCccccC
Q psy1142 392 QNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQLKAKNALPSEAFI 442 (442)
Q Consensus 392 ~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~~~iP~eAF~ 442 (442)
|+||.+|+++||||++||++||++|||||++|+++|.+++++|+||||||+
T Consensus 1 q~mv~~~s~~Tgmn~~~s~~CL~~n~Wd~~~A~~~F~~l~~~~~IP~eAF~ 51 (51)
T PF03943_consen 1 QEMVQQFSQQTGMNLEWSQKCLEENNWDYERALQNFEELKAQGKIPPEAFV 51 (51)
T ss_dssp HHHHHHHHHHCSS-CCHHHHHHHHTTT-CCHHHHHHHHCCCTT-S-CCCCT
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCChHhcC
Confidence 689999999999999999999999999999999999999999999999996
No 4
>KOG2104|consensus
Probab=99.87 E-value=1.1e-21 Score=161.52 Aligned_cols=114 Identities=26% Similarity=0.428 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHH
Q psy1142 204 RDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRA 283 (442)
Q Consensus 204 ~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~ 283 (442)
..++.+|+++||.+||+ ||.+|..+|.+.|++| ++. ...+|+.+|+++
T Consensus 7 e~v~~~FvqhYY~~FD~-dR~ql~~lY~~~S~LT--fEG-----------------------------qq~qG~~~IveK 54 (126)
T KOG2104|consen 7 EAVAKAFVQHYYSLFDN-DRSQLGALYIDTSMLT--FEG-----------------------------QQIQGKDAIVEK 54 (126)
T ss_pred HHHHHHHHHHHHHHhcC-chhHhhhhhcccceee--Ecc-----------------------------hhhcchHHHHHH
Confidence 46889999999999999 9999999999999987 432 138999999999
Q ss_pred HHhCC--CCccCCCCeeeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeEee
Q psy1142 284 LRFLP--ATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFIT 358 (442)
Q Consensus 284 l~~LP--~t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~ir 358 (442)
|.+|| +.+|.+++ +|+++.+.+++++.|.|+.+-. ++++..|+++|+|.|..+|+|++.||++++-
T Consensus 55 l~sLpFqkiqh~Itt--vD~QPt~~g~ilv~V~G~Lk~d-------Ed~~~~FsQvF~L~~n~~~~~~v~ndiFRLn 122 (126)
T KOG2104|consen 55 LTSLPFQKIQHSITT--VDSQPTPDGGILVMVVGQLKLD-------EDPILRFSQVFLLKPNIQGSYYVFNDIFRLN 122 (126)
T ss_pred HhcCChhhhhceeee--cccccCCCCcEEEEEeeeeeec-------cCCccceeeEEEEeEcCCCCEEEEeeeEEEe
Confidence 99999 77999998 9999999999999999999964 4578899999999998778899999999985
No 5
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=99.84 E-value=1.1e-20 Score=162.24 Aligned_cols=115 Identities=30% Similarity=0.504 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHH
Q psy1142 203 ARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILR 282 (442)
Q Consensus 203 ~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~ 282 (442)
+.+++..|+++||..+|+ +|..|..+|+++|+|+.... ....|.++|.+
T Consensus 2 ~~~v~~~Fv~~YY~~l~~-~~~~L~~fY~~~s~~~~~~~------------------------------~~~~g~~~I~~ 50 (119)
T cd00780 2 AEDVAKAFVQQYYSIFDN-NREGLHRLYGDTSMLSREGM------------------------------KQVTGRDAIVE 50 (119)
T ss_pred HHHHHHHHHHHHHHHHhc-CHHHHHhhcCCCcEEEECCc------------------------------eEecCHHHHHH
Confidence 457899999999999998 99999999999999983320 13789999999
Q ss_pred HHHhCC--CCccCCCCeeeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeEee
Q psy1142 283 ALRFLP--ATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFIT 358 (442)
Q Consensus 283 ~l~~LP--~t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~ir 358 (442)
.|..|| .++|++.+ +||++..+++++|+|+|.++.. .+..|.|+|+|+|+|.+ ++|+|.||+|++.
T Consensus 51 ~l~~lp~~~~~~~i~~--~d~q~~~~~~ili~V~G~~~~~-------~~~~~~F~q~F~L~~~~-~~~~I~nD~fr~~ 118 (119)
T cd00780 51 KLSSLPFQKTKHKITT--VDSQPTPSGGVIVMVTGSLKLD-------EQPPRKFSQTFVLAPQN-GGYFVLNDIFRFV 118 (119)
T ss_pred HHHhCCCcceEEEEEE--EeeeEcCCCCEEEEEEEEEEEC-------CCCceeEeEEEEEEecC-CeEEEEeeEEEec
Confidence 999999 99999977 9999998899999999999964 24689999999999986 6799999999874
No 6
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=99.77 E-value=5.2e-19 Score=151.05 Aligned_cols=114 Identities=33% Similarity=0.598 Sum_probs=94.7
Q ss_pred HHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHH
Q psy1142 206 ILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALR 285 (442)
Q Consensus 206 ~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~ 285 (442)
++..|+++||+.||+++|+.|.++|++++.++.... . ....|+++|.++|.
T Consensus 1 v~~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~------~-----------------------~~~~G~~~I~~~~~ 51 (118)
T PF02136_consen 1 VANSFVQQYYQLFDSGDREGLHKLYHDDASFLTWNG------N-----------------------RPVVGREAIQEFFQ 51 (118)
T ss_dssp HHHHHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETT------E-----------------------CEEESHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHcCCCeeecCCC------c-----------------------hhhhhHHHHHHHHh
Confidence 478999999999999899999999987776651111 0 24899999999999
Q ss_pred hCCCC--ccCCCCeeeeec--CCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeEe
Q psy1142 286 FLPAT--KHDLLSFTCDCP--LYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFI 357 (442)
Q Consensus 286 ~LP~t--~H~~~sf~vD~~--~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~i 357 (442)
.||.+ +|.+.+ +|++ .....+++|+|+|.|++. + ....|.|+|+|+|+|.+ ++|+|.||+|+.
T Consensus 52 ~l~~~~~~~~i~~--~d~qp~~~~~~~i~i~v~G~~~~~--~----~~~~~~F~q~FvL~~~~-~~~~I~nd~~r~ 118 (118)
T PF02136_consen 52 SLPATGVQHRITS--VDCQPSPSSDGSILITVTGQFKED--D----NPNPRRFSQTFVLVPQN-NGYFIANDIFRF 118 (118)
T ss_dssp HHTTSSEEEEEEE--EEEEEEEECCSEEEEEEEEEEEET--T----SEEEEEEEEEEEEEEET-TEEEEEEEEEEE
T ss_pred cCCCcccEEEecc--cccccccccCCcEEEEEEeEEEec--C----CCcccEEEEEEEEEEcC-CEEEEEeeEEEC
Confidence 99999 677776 9999 456789999999999975 1 22359999999999986 689999999974
No 7
>KOG4353|consensus
Probab=99.55 E-value=2e-14 Score=120.40 Aligned_cols=118 Identities=21% Similarity=0.338 Sum_probs=100.7
Q ss_pred hhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHH
Q psy1142 201 PEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADI 280 (442)
Q Consensus 201 ~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I 280 (442)
+++...++.|++.||...|. .|+++..+|.++|+.. |+.+| ..|.+.|
T Consensus 10 es~cr~A~eFv~~YY~smD~-rR~~i~rlY~~~atlv--WNGn~-----------------------------v~g~esl 57 (139)
T KOG4353|consen 10 ESACRAAEEFVNVYYSSMDK-RRRGIGRLYLDNATLV--WNGNP-----------------------------VSGTESL 57 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhHHHhhccceEE--EcCCc-----------------------------chhHHHH
Confidence 55678899999999999999 9999999999999987 76542 6899999
Q ss_pred HHHHHhCCCCccCCCCeeeeecCCC------CCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceE----E
Q psy1142 281 LRALRFLPATKHDLLSFTCDCPLYT------PGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFA----I 350 (442)
Q Consensus 281 ~~~l~~LP~t~H~~~sf~vD~~~~~------~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~----I 350 (442)
-++++.||.++|++++ +||++.. ...++|.|+|..+-. | +..|.|.+||+|.+.. +.|. |
T Consensus 58 s~ff~~LPsS~~qi~~--lD~Qpv~dqat~~q~~vLvvvsGtVkFd--G-----~k~r~F~qt~ll~~e~-~~~k~~~~v 127 (139)
T KOG4353|consen 58 SEFFNMLPSSEFQIND--LDCQPVHDQATGSQTTVLVVVSGTVKFD--G-----NKQRVFNQTFLLTAED-PPFKTVWKV 127 (139)
T ss_pred HHHHHhCCCccccccc--cccccchhhcccccceEEEEEeeeEEEc--C-----CccccccceeEEeecC-Cccchhhhh
Confidence 9999999999999999 9999643 246899999999963 4 4789999999999874 4455 9
Q ss_pred EcceeEeecC
Q psy1142 351 TNDQLFITSA 360 (442)
Q Consensus 351 ~ND~l~ir~~ 360 (442)
++|.++...+
T Consensus 128 ~Sd~fr~~d~ 137 (139)
T KOG4353|consen 128 ASDCFRFQDW 137 (139)
T ss_pred hhhhhhhhhc
Confidence 9999987654
No 8
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.53 E-value=6e-15 Score=134.80 Aligned_cols=96 Identities=34% Similarity=0.458 Sum_probs=61.4
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..++.|++|+|++|+|+++.. .+...+|+|+.|+|++|+|+++.++..|+.+++|+.|+|.|||+|+ ..+||..
T Consensus 61 ~~L~~L~~L~L~~N~I~~i~~--~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~----~~~YR~~ 134 (175)
T PF14580_consen 61 PGLPRLKTLDLSNNRISSISE--GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE----KKNYRLF 134 (175)
T ss_dssp ---TT--EEE--SS---S-CH--HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG----STTHHHH
T ss_pred cChhhhhhcccCCCCCCcccc--chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc----hhhHHHH
Confidence 347899999999999999853 2334699999999999999999999999999999999999999998 5899999
Q ss_pred HHhhCCcccccCCccCCCcccc
Q psy1142 161 VRKIFPKLLKLDDIQLPPPIVF 182 (442)
Q Consensus 161 i~~~fP~L~~LDg~~v~~~~~~ 182 (442)
|+..+|+|+.|||+.|.+..+.
T Consensus 135 vi~~lP~Lk~LD~~~V~~~ER~ 156 (175)
T PF14580_consen 135 VIYKLPSLKVLDGQDVTEEERQ 156 (175)
T ss_dssp HHHH-TT-SEETTEETTS-B--
T ss_pred HHHHcChhheeCCEEccHHHhc
Confidence 9999999999999999875543
No 9
>KOG2123|consensus
Probab=99.37 E-value=8.3e-14 Score=132.78 Aligned_cols=93 Identities=33% Similarity=0.481 Sum_probs=87.0
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
+.+|-|+.|.||=|+|++|.++. .|.+|+.|+|..|.|.+++||..|+++|+|+.|||..||+|... ..+||..
T Consensus 38 ~kMp~lEVLsLSvNkIssL~pl~----rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~a--g~nYR~~ 111 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLAPLQ----RCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEA--GQNYRRK 111 (388)
T ss_pred HhcccceeEEeeccccccchhHH----HHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccccc--chhHHHH
Confidence 56999999999999999998875 78999999999999999999999999999999999999999853 4699999
Q ss_pred HHhhCCcccccCCccCCCc
Q psy1142 161 VRKIFPKLLKLDDIQLPPP 179 (442)
Q Consensus 161 i~~~fP~L~~LDg~~v~~~ 179 (442)
|++.+|+|++||+++|..+
T Consensus 112 VLR~LPnLkKLDnv~Vtee 130 (388)
T KOG2123|consen 112 VLRVLPNLKKLDNVPVTEE 130 (388)
T ss_pred HHHHcccchhccCccccHH
Confidence 9999999999999999764
No 10
>KOG1644|consensus
Probab=99.22 E-value=3.5e-12 Score=116.80 Aligned_cols=92 Identities=30% Similarity=0.435 Sum_probs=85.5
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..++.|.+|.|++|+|+.+.+ .|...+|+|+.|.|.+|.|..+++|++|..||.|++|.+.|||+|. ..+||.+
T Consensus 61 p~l~rL~tLll~nNrIt~I~p--~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~----k~~YR~y 134 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDP--DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH----KKNYRLY 134 (233)
T ss_pred CCccccceEEecCCcceeecc--chhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhc----ccCceeE
Confidence 456789999999999999986 4567899999999999999999999999999999999999999998 6899999
Q ss_pred HHhhCCcccccCCccCCC
Q psy1142 161 VRKIFPKLLKLDDIQLPP 178 (442)
Q Consensus 161 i~~~fP~L~~LDg~~v~~ 178 (442)
|+..+|+|+.||-+.|..
T Consensus 135 vl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 135 VLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred EEEecCcceEeehhhhhH
Confidence 999999999999999865
No 11
>KOG0116|consensus
Probab=99.10 E-value=2.7e-10 Score=116.52 Aligned_cols=120 Identities=17% Similarity=0.257 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHH
Q psy1142 203 ARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILR 282 (442)
Q Consensus 203 ~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~ 282 (442)
...++..|+++||..+-. .-..|..+|.++|.++ -+.. ++.+ +.+.|.++|-+
T Consensus 13 ~~~vg~~Fv~qYY~~L~~-~P~~lhrfY~~~S~lt--r~~~---dg~m---------------------~s~t~~~~I~~ 65 (419)
T KOG0116|consen 13 PQLVGNEFVRQYYNVLQN-SPSKLHRFYMDDSVLT--RPGL---DGKM---------------------VSVTGLEAIHE 65 (419)
T ss_pred HHHHHHHHHHHHHHHHhh-ChHHHHHHhhccceee--ccCC---CCce---------------------EEEecHHHhhh
Confidence 346899999999999988 8899999999999986 2111 0110 24899999999
Q ss_pred HHHhCCCCcc--CCCCeeeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeEeec
Q psy1142 283 ALRFLPATKH--DLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITS 359 (442)
Q Consensus 283 ~l~~LP~t~H--~~~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~ir~ 359 (442)
.+.+|+...- .+.+ +|.+..-..+++|.|+|.|... ....|.|++||+|+|.+. +|+|+||+|+--+
T Consensus 66 ~i~sld~~~~s~eI~t--vdsQ~S~~~GvvI~VtG~lt~~-------~~~rRkF~QtFfLapq~~-~yfVlNDiFRfvd 134 (419)
T KOG0116|consen 66 KIMSLDYEVCSVEIST--VDSQASLEKGVVIMVTGYLTNK-------DGPRRKFSQTFFLAPQEK-GYFVLNDIFRFVD 134 (419)
T ss_pred heeecCCCceeEEEEE--EehhhhccCCeEEEEEEEEEeC-------CCcceEEEEEEEEeecCC-ceEEEechhhhcc
Confidence 9999996644 4555 9999888899999999999864 245899999999999865 7999999998776
No 12
>KOG2739|consensus
Probab=98.84 E-value=2.6e-09 Score=101.64 Aligned_cols=94 Identities=37% Similarity=0.482 Sum_probs=86.2
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+|+|+.|.||.|...-..++..++..+|+|+.|+|++|+|++++.+..++.+++|..|++..|+... ...||..
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~----l~dyre~ 137 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN----LDDYREK 137 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc----cccHHHH
Confidence 345789999999998877788888899999999999999999999999999999999999999999987 4679999
Q ss_pred HHhhCCcccccCCccCCC
Q psy1142 161 VRKIFPKLLKLDDIQLPP 178 (442)
Q Consensus 161 i~~~fP~L~~LDg~~v~~ 178 (442)
|...+|+|.+|||..+..
T Consensus 138 vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 138 VFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred HHHHhhhhccccccccCC
Confidence 999999999999999865
No 13
>KOG1259|consensus
Probab=98.62 E-value=1.1e-08 Score=99.07 Aligned_cols=138 Identities=22% Similarity=0.273 Sum_probs=100.5
Q ss_pred cCCHHHHHHHHHHHhhcCCcccceEeCCCCC--------CCccccccCccccCCchhHHHHHHHHHhcCCCCccEEeCCC
Q psy1142 22 ELNNEIKDKIKLVMAKRYNGDNKALDLSKFY--------ADPDFVEANMFVPLDRSNVMTSVCNIINENLPDLFALNLSE 93 (442)
Q Consensus 22 ~~~~~~~~~l~~~l~~ry~~~~~~LdLs~l~--------~dp~L~~~~i~~~ln~~~~~~~~l~i~~~~~~~L~~L~Ls~ 93 (442)
+++-+.+.++.+.| ..-|..+.||||.-+ .-+.|... +.+.| ..+.+.-...++.++.+|+|+.
T Consensus 290 DLS~N~I~~iDESv--KL~Pkir~L~lS~N~i~~v~nLa~L~~L~~L--DLS~N----~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 290 DLSGNLITQIDESV--KLAPKLRRLILSQNRIRTVQNLAELPQLQLL--DLSGN----LLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred cccccchhhhhhhh--hhccceeEEeccccceeeehhhhhcccceEe--ecccc----hhHhhhhhHhhhcCEeeeehhh
Confidence 44455566666555 235677778877432 22333322 22222 2333333446788999999999
Q ss_pred CCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHHHhhCC---cccc
Q psy1142 94 NKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIFP---KLLK 170 (442)
Q Consensus 94 N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i~~~fP---~L~~ 170 (442)
|.|.+|+++. ++-.|.+||+++|+|..++++..+..||.|+.|.|.|||+.. ..+||..|++.|- .=.+
T Consensus 362 N~iE~LSGL~----KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~----~vdYRTKVLa~FGERaSE~~ 433 (490)
T KOG1259|consen 362 NKIETLSGLR----KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG----SVDYRTKVLARFGERASEIS 433 (490)
T ss_pred hhHhhhhhhH----hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc----cchHHHHHHHHHhhhhhhee
Confidence 9999888875 677999999999999999999999999999999999999998 5789999999995 3356
Q ss_pred cCCcc
Q psy1142 171 LDDIQ 175 (442)
Q Consensus 171 LDg~~ 175 (442)
|||.+
T Consensus 434 LD~~~ 438 (490)
T KOG1259|consen 434 LDNEP 438 (490)
T ss_pred cCCCC
Confidence 67654
No 14
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.41 E-value=1.7e-07 Score=70.34 Aligned_cols=61 Identities=31% Similarity=0.419 Sum_probs=52.3
Q ss_pred CCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCC
Q psy1142 84 PDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPW 147 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl 147 (442)
|+|+.|+|++|+|+.++.- .-..+++|+.|+|++|+|+.+.. +.+.++++|++|+|++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~--~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPD--SFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTT--TTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHH--HHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence 6799999999999998641 22378999999999999988764 5688999999999999985
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.36 E-value=1.8e-07 Score=85.65 Aligned_cols=83 Identities=35% Similarity=0.468 Sum_probs=37.8
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchh-hhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLAT-IRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~-L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
.+.+|+.|+||+|+|+.+.+++ .+++|+.|+|++|+|+++.+ +. +.+|+|++|+|.+|.|.+- .+ . .
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~~l~----~L~~L~~L~L~~N~I~~i~~~l~--~~lp~L~~L~L~~N~I~~l-~~---l--~ 107 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLEGLP----GLPRLKTLDLSNNRISSISEGLD--KNLPNLQELYLSNNKISDL-NE---L--E 107 (175)
T ss_dssp T-TT--EEE-TTS--S--TT--------TT--EEE--SS---S-CHHHH--HH-TT--EEE-TTS---SC-CC---C--G
T ss_pred hhcCCCEEECCCCCCccccCcc----ChhhhhhcccCCCCCCccccchH--HhCCcCCEEECcCCcCCCh-HH---h--H
Confidence 3678999999999999999876 68999999999999999864 33 3577999999999999872 11 1 2
Q ss_pred HHhhCCcccccC--CccC
Q psy1142 161 VRKIFPKLLKLD--DIQL 176 (442)
Q Consensus 161 i~~~fP~L~~LD--g~~v 176 (442)
-+..+|+|+.|+ |.+|
T Consensus 108 ~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 108 PLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp GGGG-TT--EEE-TT-GG
T ss_pred HHHcCCCcceeeccCCcc
Confidence 346789996664 5555
No 16
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.24 E-value=9.3e-07 Score=62.15 Aligned_cols=42 Identities=29% Similarity=0.448 Sum_probs=26.3
Q ss_pred CCccEEeCCCCCCCCCCC-chhhhhccCCCcEEEcCCCCCCCchhhh
Q psy1142 84 PDLFALNLSENKLYYPES-LISLAKVIPRVKILYLAHNNIKDLATIR 129 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~~-l~~l~~~~p~L~~L~Ls~N~I~~~~~L~ 129 (442)
++|+.|+|++|+|+++++ +. .+++|+.|+|++|+|+++..+.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~----~l~~L~~L~l~~N~i~~i~~l~ 43 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELS----NLPNLETLNLSNNPISDISPLS 43 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGT----TCTTSSEEEETSSCCSBEGGGT
T ss_pred CcceEEEccCCCCcccCchHh----CCCCCCEEEecCCCCCCCcCCC
Confidence 356777777777776654 32 6677777777777777665543
No 17
>KOG2982|consensus
Probab=98.21 E-value=2.3e-06 Score=83.18 Aligned_cols=104 Identities=18% Similarity=0.270 Sum_probs=85.5
Q ss_pred HHHHHHHHhcCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcC
Q psy1142 72 MTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECF 151 (442)
Q Consensus 72 ~~~~l~i~~~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~ 151 (442)
...++++. +.||++.++-++.|.|.++..-+. .+.+|.+-.|+|+.|+|.+|..++.|.+++.|..|.+..||+.+..
T Consensus 188 w~~~~~l~-r~Fpnv~sv~v~e~PlK~~s~ek~-se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 188 WLNKNKLS-RIFPNVNSVFVCEGPLKTESSEKG-SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HHHHHhHH-hhcccchheeeecCcccchhhccc-CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 34444443 679999999999999988864332 4579999999999999999999999999999999999999998854
Q ss_pred CCchhhHHHHHhhCCcccccCCccCCC
Q psy1142 152 NEQDAYTSEVRKIFPKLLKLDDIQLPP 178 (442)
Q Consensus 152 ~~~~~y~~~i~~~fP~L~~LDg~~v~~ 178 (442)
.. ..-+.-++.++|++++|||-.|+.
T Consensus 266 ~~-~err~llIaRL~~v~vLNGskIss 291 (418)
T KOG2982|consen 266 RG-GERRFLLIARLTKVQVLNGSKISS 291 (418)
T ss_pred cC-CcceEEEEeeccceEEecCcccch
Confidence 43 234556789999999999987753
No 18
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=98.15 E-value=2.2e-05 Score=65.31 Aligned_cols=117 Identities=26% Similarity=0.307 Sum_probs=84.6
Q ss_pred HHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHhC
Q psy1142 208 RAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFL 287 (442)
Q Consensus 208 ~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~L 287 (442)
.+|+.+|+..+|.+++..|..+|++++.++..... ++ .....|+++|.+++..+
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~---------------~~-----------~~~~~g~~~i~~~~~~~ 55 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGD---------------GL-----------IYPDDGREAIEDRVRRL 55 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCC---------------EE-----------EEcCChHHHHHHHHHhc
Confidence 57899999999987899999999999999743310 00 01267999999999988
Q ss_pred CC----CccCCCCeeeeecCCCC-CeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeEe
Q psy1142 288 PA----TKHDLLSFTCDCPLYTP-GLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFI 357 (442)
Q Consensus 288 P~----t~H~~~sf~vD~~~~~~-~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~i 357 (442)
+. +.|-..+ +++...++ ...++.+.|.+....++ ....+.|..+|.+... +|+|+|.+..+++
T Consensus 56 ~~~~~~~~h~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~g~w~i~~~~~~~ 123 (124)
T cd00531 56 PFGPSRTRHLVSN--VDVQPGDDGEGVVVSVFGVLRTRGDG----EQDVFAGGQTFVLRPQ-GGGGKIANRRFRL 123 (124)
T ss_pred CCCCCceEEEEEe--EEEEeCCCCEEEEEEEEEEEEEccCC----ceeEEEEEEEEEEEEe-CCEEEEEEEEEec
Confidence 74 4555454 55544433 45667777888754211 3467889999999987 5789999988764
No 19
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=98.15 E-value=4.7e-06 Score=58.28 Aligned_cols=38 Identities=16% Similarity=0.427 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHh
Q psy1142 392 QNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQ 429 (442)
Q Consensus 392 ~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 429 (442)
+++|.+|+..||.+.+.|+.+|+.++||+++|+..|-+
T Consensus 1 ~e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 1 DEKIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 47899999999999999999999999999999999976
No 20
>KOG1859|consensus
Probab=98.13 E-value=3.2e-07 Score=97.77 Aligned_cols=85 Identities=27% Similarity=0.203 Sum_probs=72.4
Q ss_pred ccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHHHhhC
Q psy1142 86 LFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIF 165 (442)
Q Consensus 86 L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i~~~f 165 (442)
|.-|+|.||.++.|.+++ .+.+|+.|||++|-|....+|..|-.|..|+.|||.|||+|- .+.||..+..+.
T Consensus 234 L~~L~lrnN~l~tL~gie----~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c----~p~hRaataqYl 305 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTLRGIE----NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC----APWHRAATAQYL 305 (1096)
T ss_pred heeeeecccHHHhhhhHH----hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc----CHHHHHHHHhHh
Confidence 788889999998888876 677999999999999999999999888899999999999997 578888777665
Q ss_pred C-----cccccCCccCCC
Q psy1142 166 P-----KLLKLDDIQLPP 178 (442)
Q Consensus 166 P-----~L~~LDg~~v~~ 178 (442)
- .=-.|||+.+..
T Consensus 306 ~~~~a~~~f~LDgk~l~~ 323 (1096)
T KOG1859|consen 306 HKNSAPVKFKLDGKALGG 323 (1096)
T ss_pred ccccCCcceEecceeccc
Confidence 3 446789988753
No 21
>KOG3207|consensus
Probab=97.96 E-value=1.2e-06 Score=88.74 Aligned_cols=99 Identities=27% Similarity=0.362 Sum_probs=71.4
Q ss_pred CCCccEEeCCCCCCCCCCCchh----hhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhH
Q psy1142 83 LPDLFALNLSENKLYYPESLIS----LAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYT 158 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~----l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~ 158 (442)
+|.|.-|+++++.|.++..... ....||+|+.|++++|+|.+|.+++.+..+++|+.|...+|++...- + .-+
T Consensus 270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~--~-~a~ 346 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKET--D-TAK 346 (505)
T ss_pred ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccc--c-cee
Confidence 3445555555555555532221 23478999999999999999999999998899999999999998731 1 222
Q ss_pred HHHHhhCCcccccCCccCCCcccccc
Q psy1142 159 SEVRKIFPKLLKLDDIQLPPPIVFDL 184 (442)
Q Consensus 159 ~~i~~~fP~L~~LDg~~v~~~~~~~~ 184 (442)
-.|++++++|..||+..+.+..+.++
T Consensus 347 ~~VIAr~~~l~~LN~~di~p~eRR~A 372 (505)
T KOG3207|consen 347 LLVIARISQLVKLNDVDISPNERRDA 372 (505)
T ss_pred EEeeeehhhhhhhcccccChHHhhhh
Confidence 36889999999999999877554443
No 22
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=2.3e-05 Score=55.05 Aligned_cols=38 Identities=39% Similarity=0.606 Sum_probs=31.4
Q ss_pred CCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 110 PRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 110 p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
++|+.|+|++|+|+++.. .+..|++|++|+|++|+|.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~--~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP--ELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGG--HGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccCc--hHhCCCCCCEEEecCCCCCC
Confidence 589999999999998765 26778899999999999986
No 23
>KOG3207|consensus
Probab=97.64 E-value=2e-05 Score=80.13 Aligned_cols=87 Identities=24% Similarity=0.254 Sum_probs=71.6
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
+.+|+++.|+||+|-++....+-.+++.+|+|++|+|+.|++....+=..--.+++|+.|.|.++-+.. .-+..
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~------k~V~~ 216 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSW------KDVQW 216 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCH------HHHHH
Confidence 668999999999999999988888999999999999999999755432221246799999999999975 24678
Q ss_pred HHhhCCcccccCC
Q psy1142 161 VRKIFPKLLKLDD 173 (442)
Q Consensus 161 i~~~fP~L~~LDg 173 (442)
++..||.|..|+-
T Consensus 217 ~~~~fPsl~~L~L 229 (505)
T KOG3207|consen 217 ILLTFPSLEVLYL 229 (505)
T ss_pred HHHhCCcHHHhhh
Confidence 8999999998864
No 24
>KOG0472|consensus
Probab=97.37 E-value=0.00012 Score=74.12 Aligned_cols=97 Identities=27% Similarity=0.318 Sum_probs=66.5
Q ss_pred ccceEeCCCCCCCccccccCccccCCchhHHHHHHHHHhcCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCC
Q psy1142 42 DNKALDLSKFYADPDFVEANMFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNN 121 (442)
Q Consensus 42 ~~~~LdLs~l~~dp~L~~~~i~~~ln~~~~~~~~l~i~~~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~ 121 (442)
.++..-|-.|.....|++. ...-|..+.+.+- +..+++.+..|+|.+|+|+.++.- ++ .+.+|..||||+|.
T Consensus 215 ~Nki~~lPef~gcs~L~El--h~g~N~i~~lpae---~~~~L~~l~vLDLRdNklke~Pde--~c-lLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 215 RNKIRFLPEFPGCSLLKEL--HVGENQIEMLPAE---HLKHLNSLLVLDLRDNKLKEVPDE--IC-LLRSLERLDLSNND 286 (565)
T ss_pred hcccccCCCCCccHHHHHH--HhcccHHHhhHHH---HhcccccceeeeccccccccCchH--HH-HhhhhhhhcccCCc
Confidence 3444444444444344332 2223333444332 236789999999999999998641 22 67789999999999
Q ss_pred CCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 122 IKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 122 I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
|+++. -.|.++ +|+.|.|+|||+.+
T Consensus 287 is~Lp--~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 287 ISSLP--YSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred cccCC--cccccc-eeeehhhcCCchHH
Confidence 99876 356778 99999999999976
No 25
>KOG1644|consensus
Probab=97.36 E-value=0.00015 Score=67.21 Aligned_cols=77 Identities=31% Similarity=0.424 Sum_probs=60.8
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchh-hhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHH
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLAT-IRTLESLSNLEELRLEKNPWTECFNEQDAYTSEV 161 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~-L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i 161 (442)
..+...++|++|.|..+..++ .+++|..|.|++|.|..++. |+. -+|+|..|.|.||.|++. .+ . .=
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp----~l~rL~tLll~nNrIt~I~p~L~~--~~p~l~~L~LtnNsi~~l-~d---l--~p 108 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLP----HLPRLHTLLLNNNRITRIDPDLDT--FLPNLKTLILTNNSIQEL-GD---L--DP 108 (233)
T ss_pred ccccceecccccchhhcccCC----CccccceEEecCCcceeeccchhh--hccccceEEecCcchhhh-hh---c--ch
Confidence 346788999999999998876 78999999999999998874 222 367899999999999972 21 1 22
Q ss_pred HhhCCccccc
Q psy1142 162 RKIFPKLLKL 171 (442)
Q Consensus 162 ~~~fP~L~~L 171 (442)
+..+|+|+.|
T Consensus 109 La~~p~L~~L 118 (233)
T KOG1644|consen 109 LASCPKLEYL 118 (233)
T ss_pred hccCCcccee
Confidence 5678888766
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.34 E-value=0.0015 Score=64.50 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=18.3
Q ss_pred CCccEEeCCCCCCCCCC--CchhhhhccCCCcEEEcCCCCCCC
Q psy1142 84 PDLFALNLSENKLYYPE--SLISLAKVIPRVKILYLAHNNIKD 124 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~--~l~~l~~~~p~L~~L~Ls~N~I~~ 124 (442)
++|+.|+|++|.+.+.. .+......+++|+.|+|++|.+.+
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 45555555555554321 111112234455555555555544
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.32 E-value=0.0011 Score=65.36 Aligned_cols=65 Identities=28% Similarity=0.363 Sum_probs=32.3
Q ss_pred CCccEEeCCCCCCCCCCCchhh---hhcc-CCCcEEEcCCCCCCCch--h-hhhcCCCCCCCeEEecCCCCCC
Q psy1142 84 PDLFALNLSENKLYYPESLISL---AKVI-PRVKILYLAHNNIKDLA--T-IRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~~l~~l---~~~~-p~L~~L~Ls~N~I~~~~--~-L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
++|++|+|++|++.. .++..+ ...+ ++|+.|+|++|.|..-. . ...+.++++|++|+|.+|.+..
T Consensus 108 ~~L~~L~ls~~~~~~-~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 108 SSLQELKLNNNGLGD-RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred CcccEEEeeCCccch-HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 556666666666653 111111 1123 56666666666665311 1 1123344556666666666553
No 28
>KOG0531|consensus
Probab=97.29 E-value=0.00011 Score=76.42 Aligned_cols=62 Identities=34% Similarity=0.424 Sum_probs=45.1
Q ss_pred cCCCCccEEeCCCCCCCCCCC-chhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPES-LISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~-l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
..+..|..|+|.+|+|..+.. +. .+++|+.|+|++|+|.++..+..+. .|++|++.||+|..
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~----~~~~L~~L~ls~N~I~~i~~l~~l~---~L~~L~l~~N~i~~ 154 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLS----SLVNLQVLDLSFNKITKLEGLSTLT---LLKELNLSGNLISD 154 (414)
T ss_pred ccccceeeeeccccchhhcccchh----hhhcchheeccccccccccchhhcc---chhhheeccCcchh
Confidence 345677788888888877765 33 6778888888888887777666655 47778888888776
No 29
>KOG1259|consensus
Probab=97.23 E-value=0.00016 Score=70.73 Aligned_cols=61 Identities=26% Similarity=0.402 Sum_probs=34.9
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
+|.++.|+||+|.|+.+..+. .+++|..||||+|.++++..+.. .|-+++.|.|.+|-|.+
T Consensus 306 ~Pkir~L~lS~N~i~~v~nLa----~L~~L~~LDLS~N~Ls~~~Gwh~--KLGNIKtL~La~N~iE~ 366 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQNLA----ELPQLQLLDLSGNLLAECVGWHL--KLGNIKTLKLAQNKIET 366 (490)
T ss_pred ccceeEEeccccceeeehhhh----hcccceEeecccchhHhhhhhHh--hhcCEeeeehhhhhHhh
Confidence 466666666666666665433 55666666666666655444321 12255556666665544
No 30
>KOG4194|consensus
Probab=97.21 E-value=0.00015 Score=76.27 Aligned_cols=80 Identities=33% Similarity=0.347 Sum_probs=45.9
Q ss_pred CCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHHHh
Q psy1142 84 PDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRK 163 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i~~ 163 (442)
|.|++|+||.|.|+.+..-+ . ..-++|+.|+|++|.|++++ ...+.+|..|-.|.|.+|-++. .-..+++
T Consensus 149 ~alrslDLSrN~is~i~~~s-f-p~~~ni~~L~La~N~It~l~-~~~F~~lnsL~tlkLsrNritt-------Lp~r~Fk 218 (873)
T KOG4194|consen 149 PALRSLDLSRNLISEIPKPS-F-PAKVNIKKLNLASNRITTLE-TGHFDSLNSLLTLKLSRNRITT-------LPQRSFK 218 (873)
T ss_pred hhhhhhhhhhchhhcccCCC-C-CCCCCceEEeeccccccccc-cccccccchheeeecccCcccc-------cCHHHhh
Confidence 34444555555554443110 0 01235667777777776665 3555555566677777777665 1235778
Q ss_pred hCCcccccCC
Q psy1142 164 IFPKLLKLDD 173 (442)
Q Consensus 164 ~fP~L~~LDg 173 (442)
++|+|+.||=
T Consensus 219 ~L~~L~~LdL 228 (873)
T KOG4194|consen 219 RLPKLESLDL 228 (873)
T ss_pred hcchhhhhhc
Confidence 8899988864
No 31
>KOG3665|consensus
Probab=97.19 E-value=0.0003 Score=77.50 Aligned_cols=143 Identities=15% Similarity=0.187 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhhcCCcccceEeCCCCCCCc--cccccC-ccccCCc-----hhHHHHHHHHHhcCCCCccEEeCCCCCCC
Q psy1142 26 EIKDKIKLVMAKRYNGDNKALDLSKFYADP--DFVEAN-MFVPLDR-----SNVMTSVCNIINENLPDLFALNLSENKLY 97 (442)
Q Consensus 26 ~~~~~l~~~l~~ry~~~~~~LdLs~l~~dp--~L~~~~-i~~~ln~-----~~~~~~~l~i~~~~~~~L~~L~Ls~N~l~ 97 (442)
+....++..++.......+.||+++...=. ..+..| ++..+.+ +.+...=+.....+||+|.+||+|+-+|+
T Consensus 107 di~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 107 DIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS 186 (699)
T ss_pred cHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc
Confidence 345577777888777888899998732210 000000 1111111 11111111122256777777777777777
Q ss_pred CCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHHHhhCCcccccCC
Q psy1142 98 YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDD 173 (442)
Q Consensus 98 ~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i~~~fP~L~~LDg 173 (442)
++.|++ .+++|+.|.+.+=.+.+..++..|-+|++|+.|+++.........-...|. +....+|.|+.||-
T Consensus 187 nl~GIS----~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYl-ec~~~LpeLrfLDc 257 (699)
T KOG3665|consen 187 NLSGIS----RLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYL-ECGMVLPELRFLDC 257 (699)
T ss_pred CcHHHh----ccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHH-HhcccCccccEEec
Confidence 776655 566777777777777777767666667777777777766544210011232 33445677777763
No 32
>KOG4579|consensus
Probab=97.14 E-value=9.3e-05 Score=64.71 Aligned_cols=63 Identities=27% Similarity=0.343 Sum_probs=53.7
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.-.|..++|++|.+.+++. .+..++|-+..|+|++|+|.++.+= +..++.|+.|++..||+..
T Consensus 52 ~~el~~i~ls~N~fk~fp~--kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPK--KFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNPLNA 114 (177)
T ss_pred CceEEEEecccchhhhCCH--HHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCcccc
Confidence 4568889999999998763 4566899999999999999998742 7778899999999999976
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.10 E-value=0.00011 Score=54.90 Aligned_cols=55 Identities=29% Similarity=0.478 Sum_probs=44.1
Q ss_pred CCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHHHhhCCcccccC
Q psy1142 110 PRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLD 172 (442)
Q Consensus 110 p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i~~~fP~L~~LD 172 (442)
|+|+.|+|++|+|+.+.. +.+.++++|++|+|.+|.+... ....+..+|+|+.|+
T Consensus 1 p~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~l~~N~l~~i-------~~~~f~~l~~L~~L~ 55 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPP-DSFSNLPNLETLDLSNNNLTSI-------PPDAFSNLPNLRYLD 55 (61)
T ss_dssp TTESEEEETSSTESEECT-TTTTTGTTESEEEETSSSESEE-------ETTTTTTSTTESEEE
T ss_pred CcCcEEECCCCCCCccCH-HHHcCCCCCCEeEccCCccCcc-------CHHHHcCCCCCCEEe
Confidence 689999999999998874 5678889999999999999762 123567777777764
No 34
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.04 E-value=0.00071 Score=75.27 Aligned_cols=111 Identities=17% Similarity=0.204 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhcCCcccceEeCCCCCCCccccccCccccCCchhHHHHHHHHHhcCCCCccEEeCCCCCCCCCCCchhhh
Q psy1142 27 IKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLA 106 (442)
Q Consensus 27 ~~~~l~~~l~~ry~~~~~~LdLs~l~~dp~L~~~~i~~~ln~~~~~~~~l~i~~~~~~~L~~L~Ls~N~l~~l~~l~~l~ 106 (442)
.+.+++.|+.+ ....|||++..... +- ..+...+....+...-+..+....++|+.|+|++|+|+.++.+
T Consensus 191 a~~r~~~Cl~~----~~~~LdLs~~~Lts-LP-~~l~~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~LtsLP~l---- 260 (788)
T PRK15387 191 VVQKMRACLNN----GNAVLNVGESGLTT-LP-DCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVL---- 260 (788)
T ss_pred HHHHHHHHhcC----CCcEEEcCCCCCCc-CC-cchhcCCCEEEccCCcCCCCCCCCCCCcEEEecCCccCcccCc----
Confidence 46677777765 35679998865541 10 0111111111000011111223357889999999999887642
Q ss_pred hccCCCcEEEcCCCCCCCchhhh-----------hcC----CCCCCCeEEecCCCCCC
Q psy1142 107 KVIPRVKILYLAHNNIKDLATIR-----------TLE----SLSNLEELRLEKNPWTE 149 (442)
Q Consensus 107 ~~~p~L~~L~Ls~N~I~~~~~L~-----------~l~----~l~~L~eL~L~gNPl~~ 149 (442)
.++|+.|+|++|+|..+.++- .+. .+++|++|+|++|.+..
T Consensus 261 --p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 261 --PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS 316 (788)
T ss_pred --ccccceeeccCCchhhhhhchhhcCEEECcCCccccccccccccceeECCCCcccc
Confidence 346666666666665543321 001 12466777777776654
No 35
>KOG0618|consensus
Probab=96.99 E-value=0.0001 Score=81.02 Aligned_cols=65 Identities=31% Similarity=0.381 Sum_probs=49.7
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.++.|+.|.|+||.|++ ..+..+. .+++||.|+|++|+|.++.+ .+++.|..|++|+|+||-+..
T Consensus 357 ~~~~Lq~LylanN~Ltd-~c~p~l~-~~~hLKVLhLsyNrL~~fpa-s~~~kle~LeeL~LSGNkL~~ 421 (1081)
T KOG0618|consen 357 NHAALQELYLANNHLTD-SCFPVLV-NFKHLKVLHLSYNRLNSFPA-SKLRKLEELEELNLSGNKLTT 421 (1081)
T ss_pred hhHHHHHHHHhcCcccc-cchhhhc-cccceeeeeecccccccCCH-HHHhchHHhHHHhcccchhhh
Confidence 34568888899999877 2343333 78899999999999888775 456777788999999998876
No 36
>KOG1859|consensus
Probab=96.74 E-value=0.00034 Score=75.34 Aligned_cols=63 Identities=32% Similarity=0.444 Sum_probs=45.6
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
+-+|.|++|||++|++++++.+. .+++|+.|||+.|+++.+..+..- ++ +|.-|.|.||-+.+
T Consensus 184 qll~ale~LnLshNk~~~v~~Lr----~l~~LkhLDlsyN~L~~vp~l~~~-gc-~L~~L~lrnN~l~t 246 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVDNLR----RLPKLKHLDLSYNCLRHVPQLSMV-GC-KLQLLNLRNNALTT 246 (1096)
T ss_pred HHHHHhhhhccchhhhhhhHHHH----hcccccccccccchhccccccchh-hh-hheeeeecccHHHh
Confidence 33578899999999998877543 788999999999998877766432 34 46666666666554
No 37
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=96.68 E-value=0.0037 Score=71.77 Aligned_cols=64 Identities=28% Similarity=0.293 Sum_probs=28.0
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
+++|++|+|++|.+....+ .....+++|+.|+|++|.+...- -..+..+++|+.|+|.+|.+..
T Consensus 139 l~~L~~L~Ls~n~~~~~~p--~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~ 202 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIP--NDIGSFSSLKVLDLGGNVLVGKI-PNSLTNLTSLEFLTLASNQLVG 202 (968)
T ss_pred cCCCCEEECcCCcccccCC--hHHhcCCCCCEEECccCcccccC-ChhhhhCcCCCeeeccCCCCcC
Confidence 3444555555554432211 00124455555555555543211 0123334455666666665543
No 38
>PF10429 Mtr2: Nuclear pore RNA shuttling protein Mtr2; InterPro: IPR019488 Mtr2 is a monomeric, dual-action, RNA-shuttle protein found in yeasts. Transport across the nuclear-cytoplasmic membrane is via the macro-molecular membrane-spanning nuclear pore complex, NPC. The pore is lined by a subset of NPC members called nucleoporins that present FG (Phe-Gly) receptors, characteristically GLFG and FXFG motifs, for shuttling RNAs and proteins. RNA cargo is bound to soluble transport proteins (nuclear export factors) such as Mex67 in yeasts, and TAP in metazoa, which pass along the pore by binding to successive FG receptors. Mtr2 when bound to Mex67 maximises this FG-binding. Mtr2 also acts independently of Mex67 in transporting the large ribosomal RNA subunit through the pore []. ; PDB: 1Q40_A 1Q42_A 1OF5_B.
Probab=96.63 E-value=0.003 Score=56.35 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhccccc---ChhhHH-hccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHH
Q psy1142 205 DILRAFLEQYFALFDTE---SRAGLI-DAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADI 280 (442)
Q Consensus 205 ~~~~~Fl~~yf~~~D~~---~R~~L~-~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I 280 (442)
+.++-||++||...|.- ++++.+ .+|-++|.. .++.. -+.++.+-
T Consensus 5 q~~E~FvKk~la~LD~~~~~~l~~~l~~F~~~~~~I--I~Ng~-----------------------------Pi~~~~~F 53 (166)
T PF10429_consen 5 QIIETFVKKILAHLDEQDPPNLNSFLTQFLPPNCKI--IWNGT-----------------------------PIAQPTAF 53 (166)
T ss_dssp CCHHHHHHHHHHHHCT-SS--HHHHHTTCECCEEEE--EETTE-----------------------------EES-HHHH
T ss_pred hhHHHHHHHHHHHhcCcchHHHHHHhHhhcCCCcEE--EECCc-----------------------------cCCCHHHH
Confidence 46789999999999942 344444 466665543 35532 26678888
Q ss_pred HHHHHhCC-CCccCCCCeeeeecCCCC-CeEEEEEeeeEEEe
Q psy1142 281 LRALRFLP-ATKHDLLSFTCDCPLYTP-GLIQFSVCGLYEEI 320 (442)
Q Consensus 281 ~~~l~~LP-~t~H~~~sf~vD~~~~~~-~~l~i~V~G~f~e~ 320 (442)
.+.|.+.| .|+|.+.+ +||+..++ +.+++.|+|.++..
T Consensus 54 ~~~w~~~pv~TqH~L~s--~D~H~IPGsgt~i~N~n~KVRFD 93 (166)
T PF10429_consen 54 QQTWQQQPVQTQHQLTS--FDCHVIPGSGTFIINVNCKVRFD 93 (166)
T ss_dssp HHHHHCCS--EEEEEEE--EEEEEETTTTEEEEEEEEEEEEB
T ss_pred HHHHHhCccceeeeeee--eeeeEeCCCCeEEEeeeEEEEec
Confidence 99999999 99999999 89998875 46789999999976
No 39
>KOG4194|consensus
Probab=96.63 E-value=0.0015 Score=68.96 Aligned_cols=65 Identities=31% Similarity=0.380 Sum_probs=44.0
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.++|+|+.++|.+|.|+.++.+. ....+|+.|+|.+|.|.++.. +.|+.++.|+.|+|+.|-|.+
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~---~~sghl~~L~L~~N~I~sv~s-e~L~~l~alrslDLSrN~is~ 163 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFG---HESGHLEKLDLRHNLISSVTS-EELSALPALRSLDLSRNLISE 163 (873)
T ss_pred hcCCcceeeeeccchhhhccccc---ccccceeEEeeeccccccccH-HHHHhHhhhhhhhhhhchhhc
Confidence 45677777777777777766543 234467777777777777663 456666677777777777765
No 40
>KOG0617|consensus
Probab=96.55 E-value=0.00027 Score=64.11 Aligned_cols=78 Identities=28% Similarity=0.352 Sum_probs=56.3
Q ss_pred CCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHHHh
Q psy1142 84 PDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRK 163 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i~~ 163 (442)
..+..|.||+|+|+.+++ .++ .+.+|+.|++++|+|..+. ..++.+++|+.|.+.=|-+... + .=+.
T Consensus 33 s~ITrLtLSHNKl~~vpp--nia-~l~nlevln~~nnqie~lp--~~issl~klr~lnvgmnrl~~l----p----rgfg 99 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPP--NIA-ELKNLEVLNLSNNQIEELP--TSISSLPKLRILNVGMNRLNIL----P----RGFG 99 (264)
T ss_pred hhhhhhhcccCceeecCC--cHH-HhhhhhhhhcccchhhhcC--hhhhhchhhhheecchhhhhcC----c----cccC
Confidence 456778899999988864 222 6779999999999997765 3456677888888887777541 1 1236
Q ss_pred hCCcccccCCc
Q psy1142 164 IFPKLLKLDDI 174 (442)
Q Consensus 164 ~fP~L~~LDg~ 174 (442)
.||-|++||-.
T Consensus 100 s~p~levldlt 110 (264)
T KOG0617|consen 100 SFPALEVLDLT 110 (264)
T ss_pred CCchhhhhhcc
Confidence 78888888754
No 41
>KOG2982|consensus
Probab=96.55 E-value=0.00099 Score=65.21 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=31.9
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCC-chhhhhcCCCCCCCeEEecCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKD-LATIRTLESLSNLEELRLEKNPW 147 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~-~~~L~~l~~l~~L~eL~L~gNPl 147 (442)
...+..|+|..|+|++...+..+.+.+|.|+.|+|++|.+.+ ++.+- -.+.+|+.|.|.|--+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTGL 133 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--ccccceEEEEEcCCCC
Confidence 444555555555555555555555555555555555555542 22221 1122555555555544
No 42
>KOG0444|consensus
Probab=96.51 E-value=0.00078 Score=71.61 Aligned_cols=61 Identities=30% Similarity=0.372 Sum_probs=35.0
Q ss_pred CccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 85 DLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 85 ~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
++..||||+|+|.+++. .+.-.+..|-.||||+|++..+. -..+.|.+|++|.|++||+.-
T Consensus 127 n~iVLNLS~N~IetIPn--~lfinLtDLLfLDLS~NrLe~LP--PQ~RRL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 127 NSIVLNLSYNNIETIPN--SLFINLTDLLFLDLSNNRLEMLP--PQIRRLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred CcEEEEcccCccccCCc--hHHHhhHhHhhhccccchhhhcC--HHHHHHhhhhhhhcCCChhhH
Confidence 34555555555555542 12224445555666666655443 122345588999999999864
No 43
>KOG0531|consensus
Probab=96.46 E-value=0.00098 Score=69.30 Aligned_cols=62 Identities=32% Similarity=0.370 Sum_probs=53.5
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
..+++|+.|+|++|+|+++.++. .++.|+.|++++|.|+++..+.. ++.|+.|.|.+|.+..
T Consensus 115 ~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~i~~~~~~~~---l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNLISDISGLES---LKSLKLLDLSYNRIVD 176 (414)
T ss_pred hhhhcchheeccccccccccchh----hccchhhheeccCcchhccCCcc---chhhhcccCCcchhhh
Confidence 45899999999999999999886 56679999999999999888766 4577888888888876
No 44
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=96.22 E-value=0.049 Score=46.06 Aligned_cols=117 Identities=17% Similarity=0.213 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHH
Q psy1142 204 RDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRA 283 (442)
Q Consensus 204 ~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~ 283 (442)
++.+.+.+.+|+..+|.+|-..+..+|++++.|.. ... . ...|+++|.+.
T Consensus 3 ~~~i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~-~~g------~-----------------------~~~G~~~i~~~ 52 (128)
T TIGR02246 3 ERAIRALVATWEAAWAAGDAEGFADLFTPDGVFVT-VPG------Q-----------------------VWKGREAIAAA 52 (128)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHhhCCCceEEC-CCC------C-----------------------eecCHHHHHHH
Confidence 35688899999999999999999999999998741 110 0 16899999999
Q ss_pred HHhCCCC-----ccCCCCeeeeecCCCCCeEEEEEeeeEEEec-CCCCCCCCCeeeEEE-EEEEEeCCCCceEEEcceeE
Q psy1142 284 LRFLPAT-----KHDLLSFTCDCPLYTPGLIQFSVCGLYEEIT-TGTKNKSKLIRAFNR-AFLLVPRSGGGFAITNDQLF 356 (442)
Q Consensus 284 l~~LP~t-----~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~-~~~~~~~~~~r~F~R-tFvl~p~~~~~~~I~ND~l~ 356 (442)
+..+-.. .|.... .++....+... .|+|...-.. ++ . ......-.| |++++.. +|+|+|+.++..
T Consensus 53 ~~~~~~~~~~~~~~~~~~--~~i~~~~~~~A--~~~~~~~~~~~~~-~--~~~~~~~~~~t~~~~~~-~g~W~I~~~h~s 124 (128)
T TIGR02246 53 HEAFLAGPYKGTRVTIDV--IEVRFLGPDLA--IVHAIQTITAPGK-G--RARPDAAVRLTFVAVKR-DGRWLLAADHNT 124 (128)
T ss_pred HHHHhcccCCCcEEEeee--EEEEecCCCEE--EEEEEEEEEcCCC-C--CCCCCcceEEEEEEEee-CCeEEEEeccCC
Confidence 9864322 234333 22332333333 3555543221 22 0 111112233 5566664 467999999765
Q ss_pred ee
Q psy1142 357 IT 358 (442)
Q Consensus 357 ir 358 (442)
-.
T Consensus 125 ~~ 126 (128)
T TIGR02246 125 PV 126 (128)
T ss_pred CC
Confidence 43
No 45
>KOG0444|consensus
Probab=96.14 E-value=0.00074 Score=71.77 Aligned_cols=62 Identities=31% Similarity=0.349 Sum_probs=46.3
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchh-hhhcCCCCCCCeEEecCCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLAT-IRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~-L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.+.+|..++||+|.|..++. -.-++++|+.|+||+|+|+.+.- .+. +.+|++|+|+.|.++.
T Consensus 220 ~l~NL~dvDlS~N~Lp~vPe---cly~l~~LrrLNLS~N~iteL~~~~~~---W~~lEtLNlSrNQLt~ 282 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENNLPIVPE---CLYKLRNLRRLNLSGNKITELNMTEGE---WENLETLNLSRNQLTV 282 (1255)
T ss_pred hhhhhhhccccccCCCcchH---HHhhhhhhheeccCcCceeeeeccHHH---Hhhhhhhccccchhcc
Confidence 35578889999999877653 12378899999999999976652 233 3488899999999876
No 46
>KOG0618|consensus
Probab=96.12 E-value=0.0032 Score=69.68 Aligned_cols=39 Identities=33% Similarity=0.494 Sum_probs=30.5
Q ss_pred ccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCC
Q psy1142 108 VIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPW 147 (442)
Q Consensus 108 ~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl 147 (442)
.++.|+.+|||.|+|+...-...+.. |+|++|+|+||+=
T Consensus 450 ~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred hcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 57889999999999976654444332 6999999999994
No 47
>KOG4237|consensus
Probab=96.07 E-value=0.0017 Score=65.65 Aligned_cols=68 Identities=28% Similarity=0.363 Sum_probs=55.8
Q ss_pred HhcCC-CCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecC-CCCCC
Q psy1142 79 INENL-PDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEK-NPWTE 149 (442)
Q Consensus 79 ~~~~~-~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~g-NPl~~ 149 (442)
+..++ +..+.|.|.-|+|+.|++-. -+.+++|+.||||+|+|+.+.. +.++||+.|-+|.+-| |.|.+
T Consensus 61 VP~~LP~~tveirLdqN~I~~iP~~a--F~~l~~LRrLdLS~N~Is~I~p-~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQISSIPPGA--FKTLHRLRRLDLSKNNISFIAP-DAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred CcccCCCcceEEEeccCCcccCChhh--ccchhhhceecccccchhhcCh-HhhhhhHhhhHHHhhcCCchhh
Confidence 33445 46899999999999997521 2378899999999999998875 7788999999999998 88876
No 48
>PLN03150 hypothetical protein; Provisional
Probab=96.06 E-value=0.012 Score=64.56 Aligned_cols=65 Identities=25% Similarity=0.303 Sum_probs=41.7
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCC-chhhhhcCCCCCCCeEEecCCCCCCc
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKD-LATIRTLESLSNLEELRLEKNPWTEC 150 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~-~~~L~~l~~l~~L~eL~L~gNPl~~~ 150 (442)
.+++|+.|+|++|+|+..-+ .....+++|+.|+|++|+|.. +. +.+..|++|+.|+|.+|.+...
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP--~~~~~l~~L~~LdLs~N~lsg~iP--~~l~~L~~L~~L~Ls~N~l~g~ 505 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIP--PSLGSITSLEVLDLSYNSFNGSIP--ESLGQLTSLRILNLNGNSLSGR 505 (623)
T ss_pred CCCCCCEEECCCCcccCcCC--hHHhCCCCCCEEECCCCCCCCCCc--hHHhcCCCCCEEECcCCccccc
Confidence 46777888888887764221 112367778888888887763 22 2344566778888888877653
No 49
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=96.04 E-value=0.039 Score=46.05 Aligned_cols=113 Identities=12% Similarity=0.204 Sum_probs=72.0
Q ss_pred HHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHh
Q psy1142 207 LRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRF 286 (442)
Q Consensus 207 ~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~ 286 (442)
|++++++|+..|..+|-..+..+|++++.+ +...+. ....|.++|.+.+..
T Consensus 1 V~~~~~~~~~a~~~~D~~~~~~~~~~d~~~---~~~~~~--------------------------~~~~g~~~~~~~~~~ 51 (121)
T PF13474_consen 1 VEALLEEWIEAFERGDIDALLSLFSDDFVF---FGTGPG--------------------------EIWRGREAIRAYFER 51 (121)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHEEEEEEE---EETTSS--------------------------SEEESHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHhhCCCEEE---EcCCCC--------------------------ceECCHHHHHHHHHH
Confidence 578899999999998999999999988776 332111 136799999999875
Q ss_pred -CCC---CccCCCCeeeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeE
Q psy1142 287 -LPA---TKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLF 356 (442)
Q Consensus 287 -LP~---t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~ 356 (442)
+.. ....+.. +.+.. .+...+++..+.++-..++ ......+.-|+++...+ |+|+|+..++.
T Consensus 52 ~~~~~~~~~~~~~~--~~v~~-~~~~a~~~~~~~~~~~~~~----~~~~~~~r~t~v~~k~~-~~Wki~h~H~S 117 (121)
T PF13474_consen 52 DFESFRPISIEFED--VQVSV-SGDVAVVTGEFRLRFRNDG----EEIEMRGRATFVFRKED-GGWKIVHIHWS 117 (121)
T ss_dssp HHHTHSEEEEEEEE--EEEEE-ETTEEEEEEEEEEEEECTT----CEEEEEEEEEEEEEEET-TEEEEEEEEEE
T ss_pred HhhhCceEEEEEEE--EEEEE-CCCEEEEEEEEEEEEecCC----ccceeeEEEEEEEEEEC-CEEEEEEEEec
Confidence 322 2222222 22222 3455555555555422122 23356677888888874 68999987765
No 50
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=95.99 E-value=0.0069 Score=69.55 Aligned_cols=64 Identities=27% Similarity=0.318 Sum_probs=32.2
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
++.|+.|+|++|++....+- . ...+++|+.|+|++|.+...- -..+.+++.|++|+|++|.+..
T Consensus 498 l~~L~~L~Ls~N~l~~~~p~-~-~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 498 LSELMQLKLSENKLSGEIPD-E-LSSCKKLVSLDLSHNQLSGQI-PASFSEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred hhccCEEECcCCcceeeCCh-H-HcCccCCCEEECCCCcccccC-ChhHhCcccCCEEECCCCcccc
Confidence 34455555555555432210 1 124556666666666665322 1234455566777777777654
No 51
>KOG4237|consensus
Probab=95.94 E-value=0.0027 Score=64.29 Aligned_cols=64 Identities=33% Similarity=0.442 Sum_probs=41.0
Q ss_pred cCCCCccEEeCCCCCCCCCCC--chhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPES--LISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~--l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
..+|+|+.|+|++|+|+.+.. ++ .+..|+.|.|..|+|..+++ ..++++..|+.|.|.||.|+.
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe----~~a~l~eL~L~~N~l~~v~~-~~f~~ls~L~tL~L~~N~it~ 336 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFE----GAAELQELYLTRNKLEFVSS-GMFQGLSGLKTLSLYDNQITT 336 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhc----chhhhhhhhcCcchHHHHHH-HhhhccccceeeeecCCeeEE
Confidence 457899999999999998853 32 34456666666666655554 234445555566666666554
No 52
>PLN03150 hypothetical protein; Provisional
Probab=95.82 E-value=0.013 Score=64.20 Aligned_cols=77 Identities=21% Similarity=0.235 Sum_probs=57.9
Q ss_pred CccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCC-CchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHHHh
Q psy1142 85 DLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIK-DLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRK 163 (442)
Q Consensus 85 ~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~-~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i~~ 163 (442)
.+..|+|++|.|...-+- . ...+++|+.|+|++|.|. .+. ..+..+++|+.|+|.+|.+.... ...+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~-~-i~~L~~L~~L~Ls~N~l~g~iP--~~~~~l~~L~~LdLs~N~lsg~i-------P~~l~ 487 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPN-D-ISKLRHLQSINLSGNSIRGNIP--PSLGSITSLEVLDLSYNSFNGSI-------PESLG 487 (623)
T ss_pred EEEEEECCCCCccccCCH-H-HhCCCCCCEEECCCCcccCcCC--hHHhCCCCCCEEECCCCCCCCCC-------chHHh
Confidence 478999999999754332 2 337899999999999996 333 13566779999999999998632 23456
Q ss_pred hCCcccccC
Q psy1142 164 IFPKLLKLD 172 (442)
Q Consensus 164 ~fP~L~~LD 172 (442)
.+++|+.||
T Consensus 488 ~L~~L~~L~ 496 (623)
T PLN03150 488 QLTSLRILN 496 (623)
T ss_pred cCCCCCEEE
Confidence 788888886
No 53
>KOG2739|consensus
Probab=95.82 E-value=0.0051 Score=59.17 Aligned_cols=87 Identities=21% Similarity=0.215 Sum_probs=68.6
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCC-CCCCCeEEecCCCCCCcCCCchhhHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLES-LSNLEELRLEKNPWTECFNEQDAYTS 159 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~-l~~L~eL~L~gNPl~~~~~~~~~y~~ 159 (442)
..+..|+.|++.|-.++++.++. .+|+|+.|.||.|...-..+|..+.. +|+|+.|.|+||-+... ++.
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P----~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l----stl-- 109 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFP----KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL----STL-- 109 (260)
T ss_pred ccccchhhhhhhccceeecccCC----CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc----ccc--
Confidence 44677888889999999988876 78999999999998887778887743 69999999999999751 111
Q ss_pred HHHhhCCcccccCCccCC
Q psy1142 160 EVRKIFPKLLKLDDIQLP 177 (442)
Q Consensus 160 ~i~~~fP~L~~LDg~~v~ 177 (442)
.=++.+++|..||....+
T Consensus 110 ~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCS 127 (260)
T ss_pred chhhhhcchhhhhcccCC
Confidence 235677888888886654
No 54
>KOG3665|consensus
Probab=95.81 E-value=0.0085 Score=66.27 Aligned_cols=136 Identities=23% Similarity=0.203 Sum_probs=88.6
Q ss_pred HHHHHHHHhcCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcC
Q psy1142 72 MTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECF 151 (442)
Q Consensus 72 ~~~~l~i~~~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~ 151 (442)
...-.+-++..+|.|++|.+++=.+..- .+..+...||||..||+|+-+|+++..+..|+ +|+.|.+.+=+++..
T Consensus 136 s~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~Lk---nLq~L~mrnLe~e~~- 210 (699)
T KOG3665|consen 136 SNGWPKKIGTMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISNLSGISRLK---NLQVLSMRNLEFESY- 210 (699)
T ss_pred hccHHHHHhhhCcccceEEecCceecch-hHHHHhhccCccceeecCCCCccCcHHHhccc---cHHHHhccCCCCCch-
Confidence 3344455667889999999998777663 37788889999999999999999986665554 889999998888761
Q ss_pred CCchhhHHHHHhhCCcccccCCccCCCcc-----cccccCCCCCCCCCCCCcCChhhHHHHHHHHHHHhhcccc
Q psy1142 152 NEQDAYTSEVRKIFPKLLKLDDIQLPPPI-----VFDLEDNIELPKPQGSFLCHPEARDILRAFLEQYFALFDT 220 (442)
Q Consensus 152 ~~~~~y~~~i~~~fP~L~~LDg~~v~~~~-----~~~~~~~~~~P~~~~~f~~~~~~~~~~~~Fl~~yf~~~D~ 220 (442)
..-..+-.+.+|+.||=-.-..-. ..=+|-...+| .-.|.+= .+-.+.+.|++.....+.+
T Consensus 211 -----~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp--eLrfLDc-SgTdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 211 -----QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP--ELRFLDC-SGTDINEEILEELLNSHPN 276 (699)
T ss_pred -----hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCc--cccEEec-CCcchhHHHHHHHHHhCcc
Confidence 111233445688887743321100 00012233455 3455521 1446777778877776654
No 55
>KOG0617|consensus
Probab=95.70 E-value=0.0038 Score=56.79 Aligned_cols=62 Identities=32% Similarity=0.433 Sum_probs=52.1
Q ss_pred CCCccEEeCCCCCCCCCCC-chhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCc
Q psy1142 83 LPDLFALNLSENKLYYPES-LISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTEC 150 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~-l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~ 150 (442)
+.+|+.|+++||+|..++. ++ .+|+|+.|+++-|++..+. ..+..+|.|+-|+|+-|.+.+.
T Consensus 55 l~nlevln~~nnqie~lp~~is----sl~klr~lnvgmnrl~~lp--rgfgs~p~levldltynnl~e~ 117 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQIEELPTSIS----SLPKLRILNVGMNRLNILP--RGFGSFPALEVLDLTYNNLNEN 117 (264)
T ss_pred hhhhhhhhcccchhhhcChhhh----hchhhhheecchhhhhcCc--cccCCCchhhhhhccccccccc
Confidence 5678999999999999863 33 7899999999999987655 4566789999999999999875
No 56
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.68 E-value=0.0081 Score=67.05 Aligned_cols=59 Identities=31% Similarity=0.359 Sum_probs=34.6
Q ss_pred CccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhh------------------hhcCCCCCCCeEEecCCC
Q psy1142 85 DLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATI------------------RTLESLSNLEELRLEKNP 146 (442)
Q Consensus 85 ~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L------------------~~l~~l~~L~eL~L~gNP 146 (442)
.|+.|+|++|+|+.++.. .++|+.|+|++|+|+++..+ +.+.++++|+.|+|.+||
T Consensus 383 ~L~~LdLs~N~Lt~LP~l------~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 383 GLKELIVSGNRLTSLPVL------PSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ccceEEecCCcccCCCCc------ccCCCEEEccCCcCCCCCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 466666666666654421 23455555555555443221 123456788899999999
Q ss_pred CCC
Q psy1142 147 WTE 149 (442)
Q Consensus 147 l~~ 149 (442)
++.
T Consensus 457 Ls~ 459 (788)
T PRK15387 457 LSE 459 (788)
T ss_pred CCc
Confidence 986
No 57
>KOG2123|consensus
Probab=95.50 E-value=0.0022 Score=62.38 Aligned_cols=76 Identities=30% Similarity=0.336 Sum_probs=59.9
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHHH
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVR 162 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i~ 162 (442)
+.++..||+-+..|.++. +++++|.|+.|.||=|+|+++..+.. |.+|+||+|..|-|.+. .+ -+-+
T Consensus 18 l~~vkKLNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIssL~pl~r---CtrLkElYLRkN~I~sl----dE--L~YL 84 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISSLAPLQR---CTRLKELYLRKNCIESL----DE--LEYL 84 (388)
T ss_pred HHHhhhhcccCCCccHHH----HHHhcccceeEEeeccccccchhHHH---HHHHHHHHHHhcccccH----HH--HHHH
Confidence 567788999999998865 46699999999999999999776554 55899999999999872 11 1235
Q ss_pred hhCCccccc
Q psy1142 163 KIFPKLLKL 171 (442)
Q Consensus 163 ~~fP~L~~L 171 (442)
+-+|+|+.|
T Consensus 85 knlpsLr~L 93 (388)
T KOG2123|consen 85 KNLPSLRTL 93 (388)
T ss_pred hcCchhhhH
Confidence 677888665
No 58
>KOG1909|consensus
Probab=95.33 E-value=0.032 Score=55.86 Aligned_cols=149 Identities=17% Similarity=0.206 Sum_probs=93.4
Q ss_pred cCCHHHHHHHHHHHhhcCCcccceEeCCCCCCCcc-----------------------ccccCccccCCch-hHHHHHHH
Q psy1142 22 ELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPD-----------------------FVEANMFVPLDRS-NVMTSVCN 77 (442)
Q Consensus 22 ~~~~~~~~~l~~~l~~ry~~~~~~LdLs~l~~dp~-----------------------L~~~~i~~~ln~~-~~~~~~l~ 77 (442)
.+.++.++-+...+.+.|+ .+.|-|.|-+..|. |+- +.+..|+. +.-...+.
T Consensus 103 A~G~~g~~~l~~ll~s~~~--L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv--~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTD--LEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRV--FICGRNRLENGGATALA 178 (382)
T ss_pred ccCccchHHHHHHHHhccC--HHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEE--EEeeccccccccHHHHH
Confidence 4556677777888888666 45666666554431 111 12223332 11111111
Q ss_pred HHhcCCCCccEEeCCCCCCCCCCCchhh---hhccCCCcEEEcCCCCCCCchhh---hhcCCCCCCCeEEecCCCCCCcC
Q psy1142 78 IINENLPDLFALNLSENKLYYPESLISL---AKVIPRVKILYLAHNNIKDLATI---RTLESLSNLEELRLEKNPWTECF 151 (442)
Q Consensus 78 i~~~~~~~L~~L~Ls~N~l~~l~~l~~l---~~~~p~L~~L~Ls~N~I~~~~~L---~~l~~l~~L~eL~L~gNPl~~~~ 151 (442)
-+-+..|.|+.+.++.|.|.. .++..+ ...+|+|+.|||.+|-++.-..+ ..|+.|++|++|++..+-+.+.
T Consensus 179 ~~~~~~~~leevr~~qN~I~~-eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~- 256 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRP-EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE- 256 (382)
T ss_pred HHHHhccccceEEEecccccC-chhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc-
Confidence 111334788888888888866 333222 24789999999999999876654 3567788899999999988762
Q ss_pred CCchhhHHHHHhhCCcccccC--CccCC
Q psy1142 152 NEQDAYTSEVRKIFPKLLKLD--DIQLP 177 (442)
Q Consensus 152 ~~~~~y~~~i~~~fP~L~~LD--g~~v~ 177 (442)
....+...+.+.+|+|++|+ |.++.
T Consensus 257 -Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 257 -GAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred -cHHHHHHHHhccCCCCceeccCcchhH
Confidence 22355667778889998887 55554
No 59
>KOG0472|consensus
Probab=95.19 E-value=0.016 Score=59.05 Aligned_cols=60 Identities=25% Similarity=0.401 Sum_probs=43.2
Q ss_pred ccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 86 LFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 86 L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
++++-.++|+|..++.- . ...+.+|..|||.+|.|..+.- .+.++.+|++|.|.|||+..
T Consensus 483 lEtllas~nqi~~vd~~-~-l~nm~nL~tLDL~nNdlq~IPp--~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 483 LETLLASNNQIGSVDPS-G-LKNMRNLTTLDLQNNDLQQIPP--ILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred HHHHHhccccccccChH-H-hhhhhhcceeccCCCchhhCCh--hhccccceeEEEecCCccCC
Confidence 44444555666665421 1 2367799999999999987763 35678899999999999985
No 60
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.01 E-value=0.062 Score=60.09 Aligned_cols=57 Identities=23% Similarity=0.223 Sum_probs=34.0
Q ss_pred CCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 84 PDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
++|+.|+|++|+|+.++. . ..++|+.|+|++|+|..+..- + ...|+.|+|.+|.|..
T Consensus 220 ~nL~~L~Ls~N~LtsLP~--~---l~~~L~~L~Ls~N~L~~LP~~--l--~s~L~~L~Ls~N~L~~ 276 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPA--T---LPDTIQEMELSINRITELPER--L--PSALQSLDLFHNKISC 276 (754)
T ss_pred cCCCEEECCCCccccCCh--h---hhccccEEECcCCccCcCChh--H--hCCCCEEECcCCccCc
Confidence 467788888887776653 1 224667777777776654321 1 1256666666666653
No 61
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.91 E-value=0.017 Score=59.32 Aligned_cols=62 Identities=32% Similarity=0.478 Sum_probs=50.5
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhcc-CCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVI-PRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~-p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
+..+..|++.+|.++.+.+... .+ ++|+.|++++|+|.++. ..+..++.|+.|++.+|++++
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~---~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~~ 177 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIG---LLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLSD 177 (394)
T ss_pred ccceeEEecCCcccccCccccc---cchhhcccccccccchhhhh--hhhhccccccccccCCchhhh
Confidence 3679999999999999887542 34 38999999999999874 345567789999999999987
No 62
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.57 E-value=0.031 Score=57.39 Aligned_cols=59 Identities=36% Similarity=0.501 Sum_probs=43.6
Q ss_pred CccEEeCCCCCCCCCC-CchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 85 DLFALNLSENKLYYPE-SLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 85 ~L~~L~Ls~N~l~~l~-~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
+|..|++++|+|..+. ++. .+++|+.|++++|+|.++..... .++.|++|.+++|-+..
T Consensus 141 nL~~L~l~~N~i~~l~~~~~----~l~~L~~L~l~~N~l~~l~~~~~--~~~~L~~L~ls~N~i~~ 200 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLR----NLPNLKNLDLSFNDLSDLPKLLS--NLSNLNNLDLSGNKISD 200 (394)
T ss_pred hcccccccccchhhhhhhhh----ccccccccccCCchhhhhhhhhh--hhhhhhheeccCCcccc
Confidence 7888888888888873 332 67888888888888887765431 34477888888888776
No 63
>PF15008 DUF4518: Domain of unknown function (DUF4518)
Probab=93.54 E-value=0.37 Score=46.80 Aligned_cols=128 Identities=16% Similarity=0.203 Sum_probs=87.7
Q ss_pred ChhhHHHHHHHHHHHhhcccccChhhH--HhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCH
Q psy1142 200 HPEARDILRAFLEQYFALFDTESRAGL--IDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGK 277 (442)
Q Consensus 200 ~~~~~~~~~~Fl~~yf~~~D~~~R~~L--~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~ 277 (442)
+.+.+.++++|.+.||..+.+ ....+ ..+|+| |.+++.+..+.. .....+.|.
T Consensus 124 ~~~~~~L~~~F~~WFf~llNs-~~~~wgpqhFW~D-a~L~~~~~~~~~-----------------------~~e~~~~Ga 178 (262)
T PF15008_consen 124 QYPIHLLAEEFCEWFFELLNS-PQDDWGPQHFWPD-AKLKLYYSTSEQ-----------------------NVEEYCEGA 178 (262)
T ss_pred cCCHHHHHHHHHHHHHHHhcc-cccccChhhccCC-CeEEEEEEcCCC-----------------------ceeEEecCH
Confidence 344788999999999999987 44554 456654 666766654311 111124899
Q ss_pred HHHHHHHHhCCCCccCC-----CCeeeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCC--CCceEE
Q psy1142 278 ADILRALRFLPATKHDL-----LSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRS--GGGFAI 350 (442)
Q Consensus 278 ~~I~~~l~~LP~t~H~~-----~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~--~~~~~I 350 (442)
+.+...|-+|.+...-+ ++--+.+...+-++++|.|+|..-.. ..++=-|-+.|-|..++ ++.|+|
T Consensus 179 ~~vs~~Llsl~~e~~l~fnPNl~~~G~k~~~~phGlV~V~v~GTvH~~-------~~ClGiFEq~FGLiRdP~~~N~WKi 251 (262)
T PF15008_consen 179 EEVSLRLLSLVKEERLFFNPNLDSDGVKGRISPHGLVLVAVCGTVHRD-------NTCLGIFEQIFGLIRDPFAENNWKI 251 (262)
T ss_pred HHHHHHHHHHhhcccEEECCCCCCCCcceEEcCCCcEEEEEeeeEecC-------CceEeehhhhhhcccCccccCceeE
Confidence 99999999998775422 11123444444467899999998743 24666799999999664 456999
Q ss_pred EcceeEeec
Q psy1142 351 TNDQLFITS 359 (442)
Q Consensus 351 ~ND~l~ir~ 359 (442)
-+=-+.|+.
T Consensus 252 K~~~l~i~~ 260 (262)
T PF15008_consen 252 KFVNLRIRG 260 (262)
T ss_pred EEEEEEEEe
Confidence 988888874
No 64
>KOG4579|consensus
Probab=93.24 E-value=0.019 Score=50.52 Aligned_cols=86 Identities=26% Similarity=0.315 Sum_probs=63.5
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchh-hhhcCCCCCCCeEEecCCCCCCcCCCchhhHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLAT-IRTLESLSNLEELRLEKNPWTECFNEQDAYTS 159 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~-L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~ 159 (442)
..+|.+++|||++|+|++++. + ++ .+|.|+.|+++.|.|...-+ +-+ |.+|..|+..+|-+.+. .|-
T Consensus 74 ~kf~t~t~lNl~~neisdvPe-E-~A-am~aLr~lNl~~N~l~~~p~vi~~---L~~l~~Lds~~na~~ei-----d~d- 141 (177)
T KOG4579|consen 74 IKFPTATTLNLANNEISDVPE-E-LA-AMPALRSLNLRFNPLNAEPRVIAP---LIKLDMLDSPENARAEI-----DVD- 141 (177)
T ss_pred hccchhhhhhcchhhhhhchH-H-Hh-hhHHhhhcccccCccccchHHHHH---HHhHHHhcCCCCccccC-----cHH-
Confidence 558899999999999999863 2 33 79999999999999976554 333 44778899999988763 233
Q ss_pred HHHhhCCcccccCCccCCC
Q psy1142 160 EVRKIFPKLLKLDDIQLPP 178 (442)
Q Consensus 160 ~i~~~fP~L~~LDg~~v~~ 178 (442)
.+....|.|..|...++..
T Consensus 142 l~~s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 142 LFYSSLPALIKLGNEPLGD 160 (177)
T ss_pred HhccccHHHHHhcCCcccc
Confidence 4455566677776655544
No 65
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=93.23 E-value=0.074 Score=59.48 Aligned_cols=57 Identities=30% Similarity=0.422 Sum_probs=41.0
Q ss_pred CCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 84 PDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
++|+.|++++|.|+.++. . ..++|+.|+|++|+|+.+.. .+ .+.|++|+|.+|.+..
T Consensus 325 ~sL~~L~Ls~N~Lt~LP~--~---l~~sL~~L~Ls~N~L~~LP~--~l--p~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 325 PGLKTLEAGENALTSLPA--S---LPPELQVLDVSKNQITVLPE--TL--PPTITTLDVSRNALTN 381 (754)
T ss_pred ccceeccccCCccccCCh--h---hcCcccEEECCCCCCCcCCh--hh--cCCcCEEECCCCcCCC
Confidence 568888888888887753 1 23688888888888876543 11 2478888888888775
No 66
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=92.42 E-value=0.38 Score=32.10 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHH
Q psy1142 392 QNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVT 425 (442)
Q Consensus 392 ~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~ 425 (442)
++.|+++... |-..+=|.+.|..++||.++|+.
T Consensus 3 ~~~v~~L~~m-Gf~~~~~~~AL~~~~~nve~A~~ 35 (37)
T PF00627_consen 3 EEKVQQLMEM-GFSREQAREALRACNGNVERAVD 35 (37)
T ss_dssp HHHHHHHHHH-TS-HHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 4578888888 99999999999999999999985
No 67
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=92.39 E-value=0.091 Score=32.49 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=14.8
Q ss_pred CCCcEEEcCCCCCCCchhhh
Q psy1142 110 PRVKILYLAHNNIKDLATIR 129 (442)
Q Consensus 110 p~L~~L~Ls~N~I~~~~~L~ 129 (442)
.+|+.|+|++|+|+.++.|+
T Consensus 2 ~~L~~L~L~~NkI~~IEnL~ 21 (26)
T smart00365 2 TNLEELDLSQNKIKKIENLD 21 (26)
T ss_pred CccCEEECCCCccceecCcc
Confidence 47778888888887776654
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.14 E-value=0.1 Score=28.84 Aligned_cols=15 Identities=27% Similarity=0.596 Sum_probs=7.1
Q ss_pred CCCcEEEcCCCCCCC
Q psy1142 110 PRVKILYLAHNNIKD 124 (442)
Q Consensus 110 p~L~~L~Ls~N~I~~ 124 (442)
++|+.|+|++|+|++
T Consensus 1 ~~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTS 15 (17)
T ss_dssp TT-SEEEETSS--SS
T ss_pred CccCEEECCCCCCCC
Confidence 356666666666554
No 69
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=91.78 E-value=0.25 Score=58.23 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=34.7
Q ss_pred CCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCC-CCCchhhhhcCCCCCCCeEEecCCCCC
Q psy1142 84 PDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNN-IKDLATIRTLESLSNLEELRLEKNPWT 148 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~-I~~~~~L~~l~~l~~L~eL~L~gNPl~ 148 (442)
.+|+.|+|++|+|..+..- ...+++|+.|+|++|. ++.+. .+..+++|++|+|.+|...
T Consensus 611 ~~L~~L~L~~s~l~~L~~~---~~~l~~Lk~L~Ls~~~~l~~ip---~ls~l~~Le~L~L~~c~~L 670 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDG---VHSLTGLRNIDLRGSKNLKEIP---DLSMATNLETLKLSDCSSL 670 (1153)
T ss_pred cCCcEEECcCccccccccc---cccCCCCCEEECCCCCCcCcCC---ccccCCcccEEEecCCCCc
Confidence 4567777777777665321 1256777777777653 33333 3445567777777766543
No 70
>KOG3864|consensus
Probab=90.97 E-value=0.085 Score=49.21 Aligned_cols=80 Identities=23% Similarity=0.207 Sum_probs=34.1
Q ss_pred ccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCC-CCCCCeEEecCCCCCCcCCCchhhHHHHHhh
Q psy1142 86 LFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLES-LSNLEELRLEKNPWTECFNEQDAYTSEVRKI 164 (442)
Q Consensus 86 L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~-l~~L~eL~L~gNPl~~~~~~~~~y~~~i~~~ 164 (442)
++.++-++..|.. .++..|. .++.|+.|.+.+.+==+=..|+.+.+ .++|++|.|+|||--+. .--..+..
T Consensus 103 IeaVDAsds~I~~-eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~------~GL~~L~~ 174 (221)
T KOG3864|consen 103 IEAVDASDSSIMY-EGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD------GGLACLLK 174 (221)
T ss_pred EEEEecCCchHHH-HHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech------hHHHHHHH
Confidence 4555555555533 1233222 34444444444433222222444443 34555555555553331 11234455
Q ss_pred CCcccccCC
Q psy1142 165 FPKLLKLDD 173 (442)
Q Consensus 165 fP~L~~LDg 173 (442)
|++|+.|.=
T Consensus 175 lknLr~L~l 183 (221)
T KOG3864|consen 175 LKNLRRLHL 183 (221)
T ss_pred hhhhHHHHh
Confidence 555555443
No 71
>KOG1909|consensus
Probab=90.58 E-value=0.39 Score=48.27 Aligned_cols=87 Identities=23% Similarity=0.272 Sum_probs=53.7
Q ss_pred CCccEEeCCCCCCCCCCC--chhhhhccCCCcEEEcCCCCCCCchh---hhhcCCCCCCCeEEecCCCCCCcCCCchhhH
Q psy1142 84 PDLFALNLSENKLYYPES--LISLAKVIPRVKILYLAHNNIKDLAT---IRTLESLSNLEELRLEKNPWTECFNEQDAYT 158 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~~--l~~l~~~~p~L~~L~Ls~N~I~~~~~---L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~ 158 (442)
+.|+.+..++|++-+-.. +....+..|.|+.+-++.|.|..-.. ...+..+++|+-|+|..|-+... ..-|.
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e---gs~~L 233 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE---GSVAL 233 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH---HHHHH
Confidence 567777777777766431 22233456777777777777765443 23455667777777777777652 34556
Q ss_pred HHHHhhCCcccccCC
Q psy1142 159 SEVRKIFPKLLKLDD 173 (442)
Q Consensus 159 ~~i~~~fP~L~~LDg 173 (442)
...+..||.|+.|+-
T Consensus 234 akaL~s~~~L~El~l 248 (382)
T KOG1909|consen 234 AKALSSWPHLRELNL 248 (382)
T ss_pred HHHhcccchheeecc
Confidence 666666666666543
No 72
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=90.39 E-value=0.2 Score=30.94 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=19.4
Q ss_pred hhhHHHHHhhCCcccccCCccC
Q psy1142 155 DAYTSEVRKIFPKLLKLDDIQL 176 (442)
Q Consensus 155 ~~y~~~i~~~fP~L~~LDg~~v 176 (442)
++||..|+..+|+|+.||....
T Consensus 2 ~~YR~~Vi~~LPqL~~LD~~~~ 23 (26)
T smart00446 2 AHYREKVIRLLPQLRKLDXXXX 23 (26)
T ss_pred ccHHHHHHHHCCccceeccccc
Confidence 4799999999999999998643
No 73
>KOG2120|consensus
Probab=90.31 E-value=0.28 Score=48.48 Aligned_cols=101 Identities=21% Similarity=0.193 Sum_probs=46.8
Q ss_pred cceEeCCCCCCCc----------cccccCccccCCchhHHHHHHHHHhcCCCCccEEeCCCCCCCCCCCchh-hhhccCC
Q psy1142 43 NKALDLSKFYADP----------DFVEANMFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLIS-LAKVIPR 111 (442)
Q Consensus 43 ~~~LdLs~l~~dp----------~L~~~~i~~~ln~~~~~~~~l~i~~~~~~~L~~L~Ls~N~l~~l~~l~~-l~~~~p~ 111 (442)
.|.|.|.++..|. .|...++.+.-.- -...++.+-+++..|.+||||...+..=. +.. +..--++
T Consensus 212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~---t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~ 287 (419)
T KOG2120|consen 212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF---TENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISET 287 (419)
T ss_pred hhhccccccccCcHHHHHHhccccceeecccccccc---chhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchh
Confidence 5667788877763 3333333222111 11122223355677777888777775421 111 1122345
Q ss_pred CcEEEcCCCCCC-Cchhhhhc-CCCCCCCeEEecCCCC
Q psy1142 112 VKILYLAHNNIK-DLATIRTL-ESLSNLEELRLEKNPW 147 (442)
Q Consensus 112 L~~L~Ls~N~I~-~~~~L~~l-~~l~~L~eL~L~gNPl 147 (442)
|+.|+|++-.=. ...++..| +.+|+|.+|+|++|--
T Consensus 288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence 555555543210 00123333 2355666666655543
No 74
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=90.09 E-value=0.75 Score=30.45 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHH
Q psy1142 394 MVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTI 426 (442)
Q Consensus 394 mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~ 426 (442)
.|.++... |...+++...|+.++||.++|+..
T Consensus 4 ~v~~L~~m-Gf~~~~a~~aL~~~~~d~~~A~~~ 35 (37)
T smart00165 4 KIDQLLEM-GFSREEALKALRAANGNVERAAEY 35 (37)
T ss_pred HHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHH
Confidence 34444443 999999999999999999999753
No 75
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=89.99 E-value=0.74 Score=38.60 Aligned_cols=70 Identities=23% Similarity=0.275 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHH
Q psy1142 204 RDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRA 283 (442)
Q Consensus 204 ~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~ 283 (442)
+..+.+++..|...+|..+...+..+|++++.+.+.- +. .....|+++|.+.
T Consensus 6 ~~~I~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~---------~~-------------------~~~~~G~~~i~~~ 57 (127)
T PF13577_consen 6 RAAIRDLIARYARALDTGDWEEWADLFTEDAVFDFPG---------FG-------------------FGRYRGRDAIRAF 57 (127)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETT---------TC-------------------EEEEESHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeC---------cc-------------------ccccCCHHHHHHH
Confidence 5678899999999999988888999999999986321 00 0137899999999
Q ss_pred HHhC----CCCccCCCCeeeee
Q psy1142 284 LRFL----PATKHDLLSFTCDC 301 (442)
Q Consensus 284 l~~L----P~t~H~~~sf~vD~ 301 (442)
+... +.+.|-+....||+
T Consensus 58 ~~~~~~~~~~~~H~~~~~~v~~ 79 (127)
T PF13577_consen 58 LRARFDGFAATRHMVTNPVVDV 79 (127)
T ss_dssp HHHHHHHEEEEEEEEEEEEEEE
T ss_pred HHHhcccccceeEEccceEEEE
Confidence 8764 57788888877887
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.95 E-value=0.15 Score=28.07 Aligned_cols=16 Identities=44% Similarity=0.602 Sum_probs=11.2
Q ss_pred CCccEEeCCCCCCCCC
Q psy1142 84 PDLFALNLSENKLYYP 99 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l 99 (442)
++|+.|+|++|+|+.|
T Consensus 1 ~~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSL 16 (17)
T ss_dssp TT-SEEEETSS--SSE
T ss_pred CccCEEECCCCCCCCC
Confidence 5789999999999875
No 77
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=88.64 E-value=1.2 Score=35.63 Aligned_cols=106 Identities=16% Similarity=0.091 Sum_probs=60.1
Q ss_pred HHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHhC
Q psy1142 208 RAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFL 287 (442)
Q Consensus 208 ~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~L 287 (442)
.+..++|...+.+.|...+..+|++++.|. .+. . -..|++++++.+..-
T Consensus 2 ~a~~~~~~~A~~~~D~~~~~~~~~~d~~~~--~~~-----g------------------------~~~~~~~~l~~~~~~ 50 (107)
T PF14534_consen 2 RALEEQYEDAFNAGDIDALASLYADDFVFV--GPG-----G------------------------TILGKEAILAAFKSG 50 (107)
T ss_dssp HHHHHHHHHHHHTTHHHHHHTTEEEEEEEE--ETT-----S------------------------EEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHhhhCCCEEEE--CCC-----C------------------------CEeCHHHHHHHHhhc
Confidence 456788888888878999999999998774 211 0 135899999999873
Q ss_pred CCCccCCCCeeeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEE
Q psy1142 288 PATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAI 350 (442)
Q Consensus 288 P~t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I 350 (442)
+...+.+.-=.+.+... +...+++....++...+| ......+..+.|.+.. +|+|.|
T Consensus 51 ~~~~~~~~~~~~~v~~~-gd~a~~~~~~~~~~~~~g----~~~~~~~~~~~v~~k~-~g~W~i 107 (107)
T PF14534_consen 51 FARFSSIKFEDVEVRVL-GDTAVVRGRWTFTWRGDG----EPVTIRGRFTSVWKKQ-DGKWRI 107 (107)
T ss_dssp CEEEEEEEEEEEEEEEE-TTEEEEEEEEEEEETTTT----EEEEEEEEEEEEEEEE-TTEEEE
T ss_pred cCCCceEEEEEEEEEEE-CCEEEEEEEEEEEEecCC----ceEEEEEEEEEEEEEe-CCEEEC
Confidence 32222221111333333 444444444444432111 1122445555566555 467876
No 78
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=88.27 E-value=0.68 Score=54.63 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=33.1
Q ss_pred CCCCccEEeCCCC-CCCCCCCchhhhhccCCCcEEEcCCCC-CCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 82 NLPDLFALNLSEN-KLYYPESLISLAKVIPRVKILYLAHNN-IKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 82 ~~~~L~~L~Ls~N-~l~~l~~l~~l~~~~p~L~~L~Ls~N~-I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
++++|+.|+|++| ++..++.. . .+++|+.|+|++|. +..+.++ ..+|++|+|.+|.+..
T Consensus 800 ~L~~L~~L~Ls~C~~L~~LP~~---~-~L~sL~~L~Ls~c~~L~~~p~~-----~~nL~~L~Ls~n~i~~ 860 (1153)
T PLN03210 800 NLHKLEHLEIENCINLETLPTG---I-NLESLESLDLSGCSRLRTFPDI-----STNISDLNLSRTGIEE 860 (1153)
T ss_pred CCCCCCEEECCCCCCcCeeCCC---C-CccccCEEECCCCCcccccccc-----ccccCEeECCCCCCcc
Confidence 4677888888775 45554321 1 45667777777643 2222221 2356666666666654
No 79
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=87.87 E-value=1.6 Score=29.00 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=26.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHH
Q psy1142 394 MVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIF 427 (442)
Q Consensus 394 mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F 427 (442)
.|+++.. .|...+++...|+.++||.++|+...
T Consensus 4 ~v~~L~~-mGf~~~~~~~AL~~~~~d~~~A~~~L 36 (38)
T cd00194 4 KLEQLLE-MGFSREEARKALRATNNNVERAVEWL 36 (38)
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 3444444 49999999999999999999998653
No 80
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=87.76 E-value=1 Score=35.56 Aligned_cols=48 Identities=8% Similarity=0.182 Sum_probs=38.8
Q ss_pred HHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHhCCC
Q psy1142 211 LEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFLPA 289 (442)
Q Consensus 211 l~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~LP~ 289 (442)
+++||..|+++|...+..+|++++.+. .+. . -..|+++|.+.+..+-.
T Consensus 1 V~~~~~a~~~~d~~~i~~~~~~d~~~~--~~~-----~------------------------~~~g~~~~~~~~~~~~~ 48 (102)
T PF12680_consen 1 VRRFFEAWNAGDLDAIAALFAPDAVFH--DPG-----G------------------------TLRGREAIREFFEEFFE 48 (102)
T ss_dssp HHHHHHHHHTTHHHHHHHTEEEEEEEE--ETT-----S------------------------EEESHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCHHHHHHHcCCCEEEE--eCC-----C------------------------cccCHHHHHHHHHHHHh
Confidence 578999999988999999999999987 211 0 17899999999987644
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.57 E-value=0.46 Score=28.86 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=10.2
Q ss_pred CCCcEEEcCCCCCCCch
Q psy1142 110 PRVKILYLAHNNIKDLA 126 (442)
Q Consensus 110 p~L~~L~Ls~N~I~~~~ 126 (442)
++|+.|+|++|+|+++.
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 45666666666666553
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.57 E-value=0.46 Score=28.86 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=10.2
Q ss_pred CCCcEEEcCCCCCCCch
Q psy1142 110 PRVKILYLAHNNIKDLA 126 (442)
Q Consensus 110 p~L~~L~Ls~N~I~~~~ 126 (442)
++|+.|+|++|+|+++.
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 45666666666666553
No 83
>KOG2120|consensus
Probab=87.30 E-value=0.86 Score=45.20 Aligned_cols=95 Identities=20% Similarity=0.135 Sum_probs=58.4
Q ss_pred HHHHHHHHhcCCCCccEEeCCCCCCC-CCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCc
Q psy1142 72 MTSVCNIINENLPDLFALNLSENKLY-YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTEC 150 (442)
Q Consensus 72 ~~~~l~i~~~~~~~L~~L~Ls~N~l~-~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~ 150 (442)
..+++..++ ++|..||||+.+=. ...+++.|...+|+|..||||+|.--+-+-+..+-.|+.|+.|.|+.+-.-.
T Consensus 277 Vtv~V~his---e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~- 352 (419)
T KOG2120|consen 277 VTVAVAHIS---ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII- 352 (419)
T ss_pred hhHHHhhhc---hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC-
Confidence 444444443 45677788765421 1135677778888888888888765444656666667788888887765433
Q ss_pred CCCchhhHHHHHhhCCcccccCCcc
Q psy1142 151 FNEQDAYTSEVRKIFPKLLKLDDIQ 175 (442)
Q Consensus 151 ~~~~~~y~~~i~~~fP~L~~LDg~~ 175 (442)
++- ---+...|.|.+||-.-
T Consensus 353 ----p~~-~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 353 ----PET-LLELNSKPSLVYLDVFG 372 (419)
T ss_pred ----hHH-eeeeccCcceEEEEecc
Confidence 111 11245667777776433
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=87.01 E-value=0.5 Score=29.22 Aligned_cols=20 Identities=40% Similarity=0.404 Sum_probs=17.3
Q ss_pred CCccEEeCCCCCCCCCCCch
Q psy1142 84 PDLFALNLSENKLYYPESLI 103 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~~l~ 103 (442)
.+|+.|+|++|+|+.+.++.
T Consensus 2 ~~L~~L~L~~NkI~~IEnL~ 21 (26)
T smart00365 2 TNLEELDLSQNKIKKIENLD 21 (26)
T ss_pred CccCEEECCCCccceecCcc
Confidence 57999999999999887764
No 85
>KOG0532|consensus
Probab=86.14 E-value=0.24 Score=52.74 Aligned_cols=59 Identities=27% Similarity=0.308 Sum_probs=41.2
Q ss_pred CccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 85 DLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 85 ~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.|+.|++..|++..+.. .+. .-.|..||+|+|+|..+. -.++.++.|++|-|++||+.+
T Consensus 190 slr~l~vrRn~l~~lp~--El~--~LpLi~lDfScNkis~iP--v~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 190 SLRDLNVRRNHLEDLPE--ELC--SLPLIRLDFSCNKISYLP--VDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred HHHHHHHhhhhhhhCCH--HHh--CCceeeeecccCceeecc--hhhhhhhhheeeeeccCCCCC
Confidence 34555555555555432 122 235889999999998877 345667799999999999987
No 86
>KOG1947|consensus
Probab=85.84 E-value=1.1 Score=46.49 Aligned_cols=63 Identities=25% Similarity=0.243 Sum_probs=26.5
Q ss_pred CCccEEeCCCCC-CCCCCCchhhhhccCCCcEEEcCCCC-CCCchhhhhcCCCCCCCeEEecCCCC
Q psy1142 84 PDLFALNLSENK-LYYPESLISLAKVIPRVKILYLAHNN-IKDLATIRTLESLSNLEELRLEKNPW 147 (442)
Q Consensus 84 ~~L~~L~Ls~N~-l~~l~~l~~l~~~~p~L~~L~Ls~N~-I~~~~~L~~l~~l~~L~eL~L~gNPl 147 (442)
.+|+.|+|+... +++ .+++.++..+++|+.|.+.+.. +++..-..-..+++.|++|+|.++..
T Consensus 243 ~~L~~l~l~~~~~isd-~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTD-IGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCcCccchhhhhccCc-hhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 444555555444 222 2244444445555555543333 33322222223344455555554443
No 87
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=84.74 E-value=0.38 Score=28.23 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=9.6
Q ss_pred CCcEEEcCCCCCCCch
Q psy1142 111 RVKILYLAHNNIKDLA 126 (442)
Q Consensus 111 ~L~~L~Ls~N~I~~~~ 126 (442)
+|+.|||++|+|+.+.
T Consensus 1 ~L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIP 16 (22)
T ss_dssp TESEEEETSSEESEEG
T ss_pred CccEEECCCCcCEeCC
Confidence 4566666666666433
No 88
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.79 E-value=0.94 Score=27.43 Aligned_cols=19 Identities=42% Similarity=0.544 Sum_probs=16.5
Q ss_pred CCCccEEeCCCCCCCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPES 101 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~ 101 (442)
+++|+.|+|++|+|+.++.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4679999999999999864
No 89
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.79 E-value=0.94 Score=27.43 Aligned_cols=19 Identities=42% Similarity=0.544 Sum_probs=16.5
Q ss_pred CCCccEEeCCCCCCCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPES 101 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~ 101 (442)
+++|+.|+|++|+|+.++.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4679999999999999864
No 90
>KOG3864|consensus
Probab=81.00 E-value=0.91 Score=42.51 Aligned_cols=88 Identities=20% Similarity=0.232 Sum_probs=66.4
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
++++.|+.|.+.+.+=-+=..++.+..-+|+|+.|+|++|.=-+-..|..|..|++|+.|.|.+=|-... .......
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~---~e~~~~~ 198 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVAN---LELVQRQ 198 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhc---hHHHHHH
Confidence 4567788888888875544457777778999999999977644445588888888999999988776653 3445567
Q ss_pred HHhhCCccccc
Q psy1142 161 VRKIFPKLLKL 171 (442)
Q Consensus 161 i~~~fP~L~~L 171 (442)
+...+|++.+.
T Consensus 199 Le~aLP~c~I~ 209 (221)
T KOG3864|consen 199 LEEALPKCDIV 209 (221)
T ss_pred HHHhCccccee
Confidence 78888888765
No 91
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=80.86 E-value=5 Score=27.42 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=30.3
Q ss_pred HHHHHHHHHH-hCCCHHHHHHHHHhcCCCHHHHHHHHHhh
Q psy1142 392 QNMVKALSQV-SGMNLNFSEKCLNEVQWDYDQAVTIFNQL 430 (442)
Q Consensus 392 ~~mv~~~~~~-Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l 430 (442)
+++|.++.+. -.+..+.=+.||++++||.+.|+....++
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~ 41 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEM 41 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 3466666443 57889999999999999999999987664
No 92
>KOG4658|consensus
Probab=79.50 E-value=1 Score=51.52 Aligned_cols=82 Identities=27% Similarity=0.220 Sum_probs=47.1
Q ss_pred CCCCccEEeCCCCC-CCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 82 NLPDLFALNLSENK-LYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~-l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
.+|.|+.|+|++|. +..|+ .....+-+|+.|||++..|+.+. ..+..|+.|..|+++.+--.... ..
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP---~~I~~Li~LryL~L~~t~I~~LP--~~l~~Lk~L~~Lnl~~~~~l~~~-------~~ 636 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLP---SSIGELVHLRYLDLSDTGISHLP--SGLGNLKKLIYLNLEVTGRLESI-------PG 636 (889)
T ss_pred hCcceEEEECCCCCccCcCC---hHHhhhhhhhcccccCCCccccc--hHHHHHHhhheeccccccccccc-------cc
Confidence 36777777777542 33332 22235667777777777776544 23344446677777665543311 34
Q ss_pred HHhhCCcccccCCcc
Q psy1142 161 VRKIFPKLLKLDDIQ 175 (442)
Q Consensus 161 i~~~fP~L~~LDg~~ 175 (442)
+....++|++|....
T Consensus 637 i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 637 ILLELQSLRVLRLPR 651 (889)
T ss_pred hhhhcccccEEEeec
Confidence 566677777776544
No 93
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=79.44 E-value=4.2 Score=33.90 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHH
Q psy1142 206 ILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALR 285 (442)
Q Consensus 206 ~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~ 285 (442)
...+.+++|+..|+.+|-..+..+|++++.+. .+... ....|+++|.+.+.
T Consensus 4 ~~~~~v~~~~~a~~~~D~~~~~~l~aed~~~~--~p~~~---------------------------~~~~G~~~i~~~~~ 54 (122)
T cd00781 4 EMKAAVQRYVEAVNAGDPEGIVALFADDATVE--DPVGS---------------------------PPRSGRAAIAAFYA 54 (122)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHcCCCeEEe--CCCCC---------------------------CCccCHHHHHHHHH
Confidence 45566888999999889999999999999985 21110 02789999999999
Q ss_pred hCCCC
Q psy1142 286 FLPAT 290 (442)
Q Consensus 286 ~LP~t 290 (442)
.++..
T Consensus 55 ~~~~~ 59 (122)
T cd00781 55 QSLGG 59 (122)
T ss_pred HHhcc
Confidence 88764
No 94
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.34 E-value=1.3 Score=27.36 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=10.2
Q ss_pred CccEEeCCCCCCCCCCC
Q psy1142 85 DLFALNLSENKLYYPES 101 (442)
Q Consensus 85 ~L~~L~Ls~N~l~~l~~ 101 (442)
.|+.|+.++|+|+.|+.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666554
No 95
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.86 E-value=1.2 Score=27.50 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=17.3
Q ss_pred CCCcEEEcCCCCCCCchhhhh
Q psy1142 110 PRVKILYLAHNNIKDLATIRT 130 (442)
Q Consensus 110 p~L~~L~Ls~N~I~~~~~L~~ 130 (442)
++|+.|++++|+++++.+|..
T Consensus 2 ~~L~~L~vs~N~Lt~LPeL~~ 22 (26)
T smart00364 2 PSLKELNVSNNQLTSLPELXX 22 (26)
T ss_pred cccceeecCCCccccCccccc
Confidence 478999999999998887653
No 96
>KOG3763|consensus
Probab=77.46 E-value=1.2 Score=47.46 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=37.9
Q ss_pred hhhhccCCCcEEEcCCCCCCCchhhhhcCC-CCCCCeEEecCC
Q psy1142 104 SLAKVIPRVKILYLAHNNIKDLATIRTLES-LSNLEELRLEKN 145 (442)
Q Consensus 104 ~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~-l~~L~eL~L~gN 145 (442)
.....+|.+..|+|++|+|.+++.+..+.. .|+|.+|+|.+|
T Consensus 212 ~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 212 HIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred HhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 345689999999999999999999998865 899999999999
No 97
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=77.44 E-value=6.8 Score=26.86 Aligned_cols=37 Identities=5% Similarity=0.142 Sum_probs=29.8
Q ss_pred HHHHHHHH-HhCCCHHHHHHHHHhcCCCHHHHHHHHHh
Q psy1142 393 NMVKALSQ-VSGMNLNFSEKCLNEVQWDYDQAVTIFNQ 429 (442)
Q Consensus 393 ~mv~~~~~-~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 429 (442)
+++.++++ .-.+..+..+.||+.+++|++.|+..+.+
T Consensus 4 ~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 4 EALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 34555533 45899999999999999999999988865
No 98
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=76.53 E-value=2.6 Score=41.41 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=22.6
Q ss_pred ccCCCcEEEcCCCCCCCchhh---hhcCCCCCCCeEEecCCCCCC
Q psy1142 108 VIPRVKILYLAHNNIKDLATI---RTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 108 ~~p~L~~L~Ls~N~I~~~~~L---~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.+.+|+.|||.+|-++-.... +.+..|+.|+||.|..+-+..
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 455666666666665544332 233445455666666665554
No 99
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.59 E-value=1.6 Score=25.83 Aligned_cols=15 Identities=40% Similarity=0.691 Sum_probs=7.4
Q ss_pred CCCcEEEcCCCCCCC
Q psy1142 110 PRVKILYLAHNNIKD 124 (442)
Q Consensus 110 p~L~~L~Ls~N~I~~ 124 (442)
++|+.|+|++|+|.+
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 456666666666543
No 100
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=73.91 E-value=2.2 Score=26.53 Aligned_cols=15 Identities=33% Similarity=0.616 Sum_probs=9.0
Q ss_pred CCCcEEEcCCCCCCC
Q psy1142 110 PRVKILYLAHNNIKD 124 (442)
Q Consensus 110 p~L~~L~Ls~N~I~~ 124 (442)
++|+.|||++|.|.+
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 356666666666654
No 101
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=73.02 E-value=19 Score=35.67 Aligned_cols=69 Identities=22% Similarity=0.214 Sum_probs=49.7
Q ss_pred cCCCCccEEeCCCCCCCCC--CCchhhhhccCCCcEEEcCCCCCCCchh---------hh---hcCCCCCCCeEEecCCC
Q psy1142 81 ENLPDLFALNLSENKLYYP--ESLISLAKVIPRVKILYLAHNNIKDLAT---------IR---TLESLSNLEELRLEKNP 146 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l--~~l~~l~~~~p~L~~L~Ls~N~I~~~~~---------L~---~l~~l~~L~eL~L~gNP 146 (442)
-.+|.|+.++||+|-+..- ..+..+.....+|+.|.|+||.+--+.. |. +-..-|.|+....-.|.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 3479999999999988553 3455666678899999999998854332 11 22345788888888888
Q ss_pred CCC
Q psy1142 147 WTE 149 (442)
Q Consensus 147 l~~ 149 (442)
+.+
T Consensus 169 len 171 (388)
T COG5238 169 LEN 171 (388)
T ss_pred hcc
Confidence 876
No 102
>KOG1947|consensus
Probab=72.35 E-value=5.4 Score=41.33 Aligned_cols=61 Identities=26% Similarity=0.340 Sum_probs=30.2
Q ss_pred hhccCCCcEEEcCCCC-CCCchhhhhcCC-CCCCCeEEecCCC-CCCcCCCchhhHHHHHhhCCcccccCC
Q psy1142 106 AKVIPRVKILYLAHNN-IKDLATIRTLES-LSNLEELRLEKNP-WTECFNEQDAYTSEVRKIFPKLLKLDD 173 (442)
Q Consensus 106 ~~~~p~L~~L~Ls~N~-I~~~~~L~~l~~-l~~L~eL~L~gNP-l~~~~~~~~~y~~~i~~~fP~L~~LDg 173 (442)
...+++|+.|+|+... |.+.. +..+.. +++|++|.+.+++ +.+ .=...+...+|.|+.||=
T Consensus 239 ~~~~~~L~~l~l~~~~~isd~~-l~~l~~~c~~L~~L~l~~c~~lt~------~gl~~i~~~~~~L~~L~l 302 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTDIG-LSALASRCPNLETLSLSNCSNLTD------EGLVSIAERCPSLRELDL 302 (482)
T ss_pred hhhcCCcCccchhhhhccCchh-HHHHHhhCCCcceEccCCCCccch------hHHHHHHHhcCcccEEee
Confidence 3345566666666555 33333 333332 5566666654444 222 223455566666655543
No 103
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=72.26 E-value=34 Score=28.50 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhcccccChhhHHhccccCceEE
Q psy1142 205 DILRAFLEQYFALFDTESRAGLIDAYHENAQYS 237 (442)
Q Consensus 205 ~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fS 237 (442)
+.+.+-++.||..+..+|-..|..++|+++.+.
T Consensus 4 ~~I~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~ 36 (116)
T PF12893_consen 4 AAIEATVQDYFDGLYNGDSEKLRSAFHPDARLQ 36 (116)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHhhCCCcEEE
Confidence 567778999998888889999999999999764
No 104
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=72.16 E-value=68 Score=28.16 Aligned_cols=111 Identities=19% Similarity=0.182 Sum_probs=63.2
Q ss_pred HHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHhCCCC
Q psy1142 211 LEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFLPAT 290 (442)
Q Consensus 211 l~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~LP~t 290 (442)
+..+-..+-.+|-..++++|.+++.|- +... ....|+++|.+.|...=..
T Consensus 16 i~dw~~Av~a~D~~av~~~YtdDav~f---~~~~---------------------------~~~~Gk~~i~k~~~~~~~~ 65 (137)
T COG4319 16 IADWAAAVRAKDADAVADFYTDDAVVF---PPPG---------------------------LQRKGKAAIRKAFEGIFAM 65 (137)
T ss_pred HHHHHHHHhcccHHHHHHhcCCceEEe---cCCC---------------------------CcccCHHHHHHHHHHHHHh
Confidence 333334555567888999999999983 2210 1268999999998865433
Q ss_pred ccCCCCe-eeeecCCC-CCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcce
Q psy1142 291 KHDLLSF-TCDCPLYT-PGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQ 354 (442)
Q Consensus 291 ~H~~~sf-~vD~~~~~-~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~ 354 (442)
.+-..+| ..|++... +.. ..++|.+.-...+ +.+....+.--=|.++....+|+|+|+-|+
T Consensus 66 ~~~~~~f~~~el~v~~~GD~--a~~~~~~~~~~~~-~dg~~~~~~~Rat~v~rK~~dg~Wk~~~dh 128 (137)
T COG4319 66 GIGPLKFTLEELQVHESGDV--AFVTALLLLTGTK-KDGPPADLAGRATYVFRKEADGGWKLAHDH 128 (137)
T ss_pred ccCCCcceeeeeeeeccCCE--EEEEEeeeeeccC-CCCcchhheeeeEEEEEEcCCCCEEEEEec
Confidence 2222222 24444222 222 2345555422111 110222345556888888888899999987
No 105
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=71.99 E-value=11 Score=31.54 Aligned_cols=27 Identities=11% Similarity=0.343 Sum_probs=24.0
Q ss_pred HHHHhhcccccChhhHHhccccCceEE
Q psy1142 211 LEQYFALFDTESRAGLIDAYHENAQYS 237 (442)
Q Consensus 211 l~~yf~~~D~~~R~~L~~~Y~~~a~fS 237 (442)
+++||..++.+|-..+..+|++++.+.
T Consensus 4 v~~~~~a~~~~d~~~~~~~~~~d~~~~ 30 (129)
T TIGR02096 4 AQHWIEAFNRGDMDAVLALLAEDVLYD 30 (129)
T ss_pred HHHHHHHHHCCCHHHHHHhcCCCeEEE
Confidence 577888899888999999999999886
No 106
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=70.84 E-value=11 Score=32.15 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHH
Q psy1142 393 NMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIF 427 (442)
Q Consensus 393 ~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F 427 (442)
+-|..+++|||...+=|.+.|++++||+-.|+-..
T Consensus 78 edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~L 112 (115)
T PRK06369 78 EDIELVAEQTGVSEEEARKALEEANGDLAEAILKL 112 (115)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHH
Confidence 46778899999999999999999999999998644
No 107
>PF10213 MRP-S28: Mitochondrial ribosomal subunit protein ; InterPro: IPR019349 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a conserved region of approx. 125 residues of one of the proteins that makes up the small subunit of the mitochondrial ribosome. In Saccharomyces cerevisiae (Baker's yeast) it is mitochondrial ribosomal protein S24 whereas in humans it is S35.
Probab=70.69 E-value=7.7 Score=33.62 Aligned_cols=44 Identities=23% Similarity=0.427 Sum_probs=37.6
Q ss_pred cCCCCEEEEEEeC-CCCCccCCHHHHHHHHHHHhhcCCcccceEeCCC
Q psy1142 4 TVTNHTLIVLVSS-ATPYVELNNEIKDKIKLVMAKRYNGDNKALDLSK 50 (442)
Q Consensus 4 ~~~~~k~~i~v~~-~~P~~~~~~~~~~~l~~~l~~ry~~~~~~LdLs~ 50 (442)
.+.++|+++.|.. +. .|++..+++++.....||++.+..|-|+.
T Consensus 23 ~p~~rkV~l~v~l~dL---~L~~~a~~Kl~~LaG~Ryd~~~d~l~i~s 67 (127)
T PF10213_consen 23 HPANRKVVLQVKLSDL---GLSEKARHKLKLLAGPRYDPETDILKISS 67 (127)
T ss_pred CCccCEEEEEEEHHhc---CCCHHHHHHHHHHhhcccCCCCCEEEEec
Confidence 4568899999987 65 56789999999999999999999888774
No 108
>PRK15386 type III secretion protein GogB; Provisional
Probab=70.66 E-value=10 Score=39.63 Aligned_cols=11 Identities=9% Similarity=0.054 Sum_probs=7.5
Q ss_pred cccceEeCCCC
Q psy1142 41 GDNKALDLSKF 51 (442)
Q Consensus 41 ~~~~~LdLs~l 51 (442)
.+.+.|++++.
T Consensus 52 ~~l~~L~Is~c 62 (426)
T PRK15386 52 RASGRLYIKDC 62 (426)
T ss_pred cCCCEEEeCCC
Confidence 45677888765
No 109
>KOG1071|consensus
Probab=66.05 E-value=11 Score=37.56 Aligned_cols=41 Identities=20% Similarity=0.224 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHh
Q psy1142 389 LIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQ 429 (442)
Q Consensus 389 ~~q~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 429 (442)
..+.+.|.+|..+||-...=|++-|++.|||+..|..--.+
T Consensus 44 ~~~~allk~LR~kTgas~~ncKkALee~~gDl~~A~~~L~k 84 (340)
T KOG1071|consen 44 ASSKALLKKLREKTGASMVNCKKALEECGGDLVLAEEWLHK 84 (340)
T ss_pred cccHHHHHHHHHHcCCcHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 35788999999999999999999999999999998765543
No 110
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=65.34 E-value=16 Score=31.14 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHH
Q psy1142 393 NMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIF 427 (442)
Q Consensus 393 ~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F 427 (442)
+-|..+.++||-..+=|.+.|++++||+-.|+-..
T Consensus 80 eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~~L 114 (116)
T TIGR00264 80 DDIELVMKQCNVSKEEARRALEECGGDLAEAIMKL 114 (116)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHh
Confidence 35777899999999999999999999999998643
No 111
>KOG0532|consensus
Probab=63.93 E-value=3 Score=44.84 Aligned_cols=81 Identities=25% Similarity=0.258 Sum_probs=46.9
Q ss_pred ccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchh-hhh--------------------cCCCCCCCeEEecC
Q psy1142 86 LFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLAT-IRT--------------------LESLSNLEELRLEK 144 (442)
Q Consensus 86 L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~-L~~--------------------l~~l~~L~eL~L~g 144 (442)
|..|-++||+|+.++. .+. .++.|..||.+.|+|.++.. +.. |-.| .|..|+++.
T Consensus 145 Lkvli~sNNkl~~lp~--~ig-~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfSc 220 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLPE--EIG-LLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSC 220 (722)
T ss_pred ceeEEEecCccccCCc--ccc-cchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeeccc
Confidence 5667777777777653 112 56677777777777755432 111 1234 677777777
Q ss_pred CCCCCcCCCchhhHHHHHhhCCcccc--cCCccCCC
Q psy1142 145 NPWTECFNEQDAYTSEVRKIFPKLLK--LDDIQLPP 178 (442)
Q Consensus 145 NPl~~~~~~~~~y~~~i~~~fP~L~~--LDg~~v~~ 178 (442)
|.|.. +..-+.....|+. ||..++..
T Consensus 221 Nkis~--------iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 221 NKISY--------LPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred Cceee--------cchhhhhhhhheeeeeccCCCCC
Confidence 77754 3333445555543 46777644
No 112
>KOG4341|consensus
Probab=60.57 E-value=3 Score=43.14 Aligned_cols=88 Identities=19% Similarity=0.059 Sum_probs=63.8
Q ss_pred CCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhc-CCCCCCCeEEecCCCCCCcCCCchhhHHHHH
Q psy1142 84 PDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTL-ESLSNLEELRLEKNPWTECFNEQDAYTSEVR 162 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l-~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i~ 162 (442)
..|+.|+|.+.+=....++......+|+++.|+|.+-.--+-..+..+ +.+++|+.|.|.+++.-+ ..-...+.
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT-----~~~Lk~la 212 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT-----DVSLKYLA 212 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH-----HHHHHHHH
Confidence 567889998888777777777788899999998887763333334444 347899999999977654 22344577
Q ss_pred hhCCcccccCCccC
Q psy1142 163 KIFPKLLKLDDIQL 176 (442)
Q Consensus 163 ~~fP~L~~LDg~~v 176 (442)
+-+|+|..||-.--
T Consensus 213 ~gC~kL~~lNlSwc 226 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWC 226 (483)
T ss_pred HhhhhHHHhhhccC
Confidence 88999998876443
No 113
>KOG4618|consensus
Probab=59.59 E-value=13 Score=28.44 Aligned_cols=25 Identities=32% Similarity=0.491 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhh
Q psy1142 407 NFSEKCLNEVQWDYDQAVTIFNQLK 431 (442)
Q Consensus 407 ~~s~~cL~~~~Wd~~~A~~~F~~l~ 431 (442)
+-|.+||++||.|=++.-.-|...+
T Consensus 29 ~aSfkCLeennyDRsKCq~yFd~Yk 53 (74)
T KOG4618|consen 29 SASFKCLEENNYDRSKCQDYFDVYK 53 (74)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHH
Confidence 5689999999999999988887654
No 114
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=57.91 E-value=6.8 Score=49.32 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=15.4
Q ss_pred eCCCCCCCCCCCchhhhhccCCCcEEEcCCCCC
Q psy1142 90 NLSENKLYYPESLISLAKVIPRVKILYLAHNNI 122 (442)
Q Consensus 90 ~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I 122 (442)
+|++|+|+.|.. ..-..+++|+.|+|++|.+
T Consensus 1 DLSnN~LstLp~--g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEE--GICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccCh--HHhccCCCceEEEeeCCcc
Confidence 455666665543 1112345555555555554
No 115
>TIGR03231 anthran_1_2_B anthranilate 1,2-dioxygenase, small subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the small subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase small subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=49.55 E-value=1.9e+02 Score=25.73 Aligned_cols=137 Identities=17% Similarity=0.241 Sum_probs=74.5
Q ss_pred HHHHHHHHhhcccccChhhHHhccccCceEEEEe--ec-CCCC--CcchhhhcccCcccccCCChhhhhhhhccCHHHHH
Q psy1142 207 LRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV--TQ-GLGN--NHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADIL 281 (442)
Q Consensus 207 ~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~--~~-~~~~--~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~ 281 (442)
+.+|+-+|=.+.|.++=.....+|++++.|-+-. +. .+.+ ...+.-+.-.+|.++ ..|+.+|..|.
T Consensus 1 v~~~l~~ea~llD~~~~~~W~~lf~~d~~Y~vP~~~~~~~~~~d~~~~~~li~~d~~~~L-----~~RV~rl~~~~---- 71 (155)
T TIGR03231 1 VEQFLYRKAELCDAQDWDAYLDLFDEDSEFHLPQWISEHNYTRDPKRELSLIYYEDRSGL-----EDRVFRIRTGK---- 71 (155)
T ss_pred ChhHHHHHHHHhcccCHHHHHHHhCcCceEEeeccCCccccccCCCCCceEEEcCChhHH-----HHHHHHHhCCC----
Confidence 4689999999999978889999999999987532 11 0110 011221222333322 34666666654
Q ss_pred HHHHhCCC--CccCCCCeeeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeEeec
Q psy1142 282 RALRFLPA--TKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITS 359 (442)
Q Consensus 282 ~~l~~LP~--t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~ir~ 359 (442)
.+.+-|. |.|-++...|.- ..++. +.|.-.|.-. .. ..+......=.|+..|+.. +|||+|..=...+-+
T Consensus 72 -a~s~~P~srtrh~vsnv~v~~--~~~~~--i~v~s~f~~~-~~-r~~~~~~~~g~~~~~Lrr~-~~g~kI~~R~i~ld~ 143 (155)
T TIGR03231 72 -AASTTPMPRTLHNIHNVRIAE--LEDGL--LRVRVNWRTL-FN-RLGLEGCFYGHATYVLKPT-GDSWLIRRKHSVLLN 143 (155)
T ss_pred -eeecCCCCeeEEEEcCEEEEe--cCCCE--EEEEEEEEEE-EE-cCCCcEEEEEEEEEEEEEe-CCEEEEEEEEEEEec
Confidence 3667885 479998855532 22322 3444444211 00 1101111112344568775 456988876666554
Q ss_pred C
Q psy1142 360 A 360 (442)
Q Consensus 360 ~ 360 (442)
.
T Consensus 144 ~ 144 (155)
T TIGR03231 144 D 144 (155)
T ss_pred C
Confidence 4
No 116
>PRK15386 type III secretion protein GogB; Provisional
Probab=48.17 E-value=21 Score=37.28 Aligned_cols=31 Identities=6% Similarity=-0.040 Sum_probs=21.0
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAH 119 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~ 119 (442)
+.++..|++++|.|+.|+.+ -++|+.|++++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~L------P~sLtsL~Lsn 81 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVL------PNELTEITIEN 81 (426)
T ss_pred hcCCCEEEeCCCCCcccCCC------CCCCcEEEccC
Confidence 47788888988888777632 12466666655
No 117
>KOG4658|consensus
Probab=46.54 E-value=13 Score=42.65 Aligned_cols=85 Identities=21% Similarity=0.228 Sum_probs=55.4
Q ss_pred cCCCCccEEeCCCCC--CCCCCCchhhhhccCCCcEEEcCCCCC-CCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhh
Q psy1142 81 ENLPDLFALNLSENK--LYYPESLISLAKVIPRVKILYLAHNNI-KDLATIRTLESLSNLEELRLEKNPWTECFNEQDAY 157 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~--l~~l~~l~~l~~~~p~L~~L~Ls~N~I-~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y 157 (442)
...++|.+|-+..|. +..+.. ..-..+|.|+.|||++|.= ..+. +...+|-+|+.|+|.+..+..
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~--~ff~~m~~LrVLDLs~~~~l~~LP--~~I~~Li~LryL~L~~t~I~~-------- 609 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISG--EFFRSLPLLRVLDLSGNSSLSKLP--SSIGELVHLRYLDLSDTGISH-------- 609 (889)
T ss_pred CCCCccceEEEeecchhhhhcCH--HHHhhCcceEEEECCCCCccCcCC--hHHhhhhhhhcccccCCCccc--------
Confidence 344689999999997 555543 1123799999999998542 2222 122345588899999998875
Q ss_pred HHHHHhhCCcccccCCccCC
Q psy1142 158 TSEVRKIFPKLLKLDDIQLP 177 (442)
Q Consensus 158 ~~~i~~~fP~L~~LDg~~v~ 177 (442)
...=+..+.+|..||.....
T Consensus 610 LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 610 LPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred cchHHHHHHhhheecccccc
Confidence 22334556678888876543
No 118
>KOG0473|consensus
Probab=45.87 E-value=2.5 Score=40.67 Aligned_cols=62 Identities=23% Similarity=0.266 Sum_probs=39.4
Q ss_pred CCCccEEeCCCCCCCCCC-CchhhhhccCCCcEEEcCCCCCCCch----hhhh-----------------cCCCCCCCeE
Q psy1142 83 LPDLFALNLSENKLYYPE-SLISLAKVIPRVKILYLAHNNIKDLA----TIRT-----------------LESLSNLEEL 140 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~-~l~~l~~~~p~L~~L~Ls~N~I~~~~----~L~~-----------------l~~l~~L~eL 140 (442)
+..+..|+|+.|++..+. .++ .+..|..|||+.|+|+-+. .+.. .+.+|+++.+
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s----~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFS----ILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHHhhccchH----HHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 566778888888887764 233 4557778888888885433 2221 1235666777
Q ss_pred EecCCCCC
Q psy1142 141 RLEKNPWT 148 (442)
Q Consensus 141 ~L~gNPl~ 148 (442)
.+.+||+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 77777754
No 119
>COG5517 Small subunit of phenylpropionate dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.42 E-value=2.8e+02 Score=25.01 Aligned_cols=140 Identities=19% Similarity=0.221 Sum_probs=78.4
Q ss_pred ChhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEe-ecC------CCCCcchhhhcccCcccccCCChhhhhhh
Q psy1142 200 HPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV-TQG------LGNNHLLNNMLANSRNLLRIEEPQRQKSL 272 (442)
Q Consensus 200 ~~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~-~~~------~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~ 272 (442)
+.+++..+.+|+-++=.+.|..+=.....+|.++|+|.|-- ... |.+..+|-. -.||- ....|+-+
T Consensus 3 ~~~l~~ri~dFL~reA~llDd~dwd~Wla~f~e~~~y~m~~w~~eq~~~~~Pq~e~s~I~--~~~k~-----~LedRV~r 75 (164)
T COG5517 3 DSELYHRISDFLYREAELLDDRDWDAWLAQFDEQAEYWMPPWDDEQTLTRDPQRETSLIY--YDSKG-----GLEDRVFR 75 (164)
T ss_pred chHHHHHHHHHHHHHHHHhccccHHHHHHHHHhhheEeCCcccccchhccCCCCceEEEE--eCCcc-----hHHHHHHH
Confidence 45677889999999999999888899999999999998432 111 111011111 11222 12356666
Q ss_pred hccCHHHHHHHHHhCC--CCccCCCCeeeeecCCCCCeEEEEEeee-EEEecCCCCCCCCCeeeEEEEE-EEEeCCCCce
Q psy1142 273 LSVGKADILRALRFLP--ATKHDLLSFTCDCPLYTPGLIQFSVCGL-YEEITTGTKNKSKLIRAFNRAF-LLVPRSGGGF 348 (442)
Q Consensus 273 l~~G~~~I~~~l~~LP--~t~H~~~sf~vD~~~~~~~~l~i~V~G~-f~e~~~~~~~~~~~~r~F~RtF-vl~p~~~~~~ 348 (442)
+-.|.. +..+| .|.|-++. +-+.-..++.+-+-|+=. |..- . ...---|--|| ++.+. ++||
T Consensus 76 i~tg~a-----~a~~P~~RTrH~isN--vqi~~~~~~~~~vR~N~~~~~~r-----~-~~~~tffg~t~y~l~~~-~e~~ 141 (164)
T COG5517 76 IRTGMA-----WATLPPSRTRHLISN--VQILEVDDGLVRVRVNYLTFRYR-----Y-DETDTFFGTTRYDLDVR-GEGW 141 (164)
T ss_pred Hhcccc-----cccCCCcccceeecc--ceEEeecCCEEEEEEeEEEEEEe-----c-cccceEeeeEEEEeecc-CCcc
Confidence 666654 44566 78999887 444444343333333211 1111 0 11112344444 44454 4479
Q ss_pred EEEcceeEeecC
Q psy1142 349 AITNDQLFITSA 360 (442)
Q Consensus 349 ~I~ND~l~ir~~ 360 (442)
.|++-...+-+.
T Consensus 142 ~i~~r~ivLd~d 153 (164)
T COG5517 142 RIASRKIVLDND 153 (164)
T ss_pred eeeeeEEEeech
Confidence 988876666543
No 120
>KOG4341|consensus
Probab=39.88 E-value=20 Score=37.33 Aligned_cols=45 Identities=36% Similarity=0.547 Sum_probs=21.3
Q ss_pred hhhccCCCcEEEcCCCCCCCchhhhhcC----CCCCCCeEEecCCCCCC
Q psy1142 105 LAKVIPRVKILYLAHNNIKDLATIRTLE----SLSNLEELRLEKNPWTE 149 (442)
Q Consensus 105 l~~~~p~L~~L~Ls~N~I~~~~~L~~l~----~l~~L~eL~L~gNPl~~ 149 (442)
++..+|.|+.|.|++-...+=+.+..+. ++..|+-|-|++.|+..
T Consensus 367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 3445555666666544432222222221 23455566666666654
No 121
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=39.01 E-value=42 Score=27.29 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=25.2
Q ss_pred eeeeecCCCCCeEE-------EEEeeeEEEecCCCCCCCCCeeeEEEEEEEE
Q psy1142 297 FTCDCPLYTPGLIQ-------FSVCGLYEEITTGTKNKSKLIRAFNRAFLLV 341 (442)
Q Consensus 297 f~vD~~~~~~~~l~-------i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~ 341 (442)
..+|+..+.+.-|. ++|+|.-++. .. .. .-..|.|.|+|.|-
T Consensus 19 v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~-~~-e~-g~~~r~F~R~~~LP 67 (91)
T cd06480 19 VCVNVHSFKPEELTVKTKDGFVEVSGKHEEQ-QK-EG-GIVSKNFTKKIQLP 67 (91)
T ss_pred EEEEeCCCCHHHcEEEEECCEEEEEEEECcc-cC-CC-CEEEEEEEEEEECC
Confidence 46788877653333 4566665543 11 11 22469999999994
No 122
>KOG4308|consensus
Probab=35.48 E-value=12 Score=39.92 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHhhcCCcccceEeCCCC
Q psy1142 24 NNEIKDKIKLVMAKRYNGDNKALDLSKF 51 (442)
Q Consensus 24 ~~~~~~~l~~~l~~ry~~~~~~LdLs~l 51 (442)
+.+--..|..++.+ +..-+.|||+..
T Consensus 157 ~~~g~~~l~~~L~~--~~~l~~l~l~~n 182 (478)
T KOG4308|consen 157 TSEGAAPLAAVLEK--NEHLTELDLSLN 182 (478)
T ss_pred cccchHHHHHHHhc--ccchhHHHHHhc
Confidence 33444455555544 444445555543
No 123
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=35.06 E-value=3e+02 Score=23.87 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=48.2
Q ss_pred HHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHhCC
Q psy1142 209 AFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFLP 288 (442)
Q Consensus 209 ~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~LP 288 (442)
+=+++||..++.+|...|..+++++..+. ++..+.. +. ....|.+.+...+..+|
T Consensus 8 ~~v~~~f~a~~~GD~~~~~~l~a~D~v~~--~p~~~~~---~~--------------------~~~~g~~~~~~~~~~~~ 62 (133)
T COG3631 8 DLVRRYFAALSRGDLDGLLALLAEDVVWE--VPGTPPL---SG--------------------TFRGGVAIRRDVFALLP 62 (133)
T ss_pred hHHHHHHHHHhcCCHHHHHhhccCceEEE--eeCCCCC---cc--------------------ccccchhhhhHHhhhCh
Confidence 44789999999999999999999999887 5443211 10 12347777788899999
Q ss_pred CCccCCCCeeeeec
Q psy1142 289 ATKHDLLSFTCDCP 302 (442)
Q Consensus 289 ~t~H~~~sf~vD~~ 302 (442)
+-.|+..--+.++.
T Consensus 63 r~~~~~~~~~~~~~ 76 (133)
T COG3631 63 RLIEDGRFTVETVY 76 (133)
T ss_pred hhcccccccceEEE
Confidence 77766554333333
No 124
>KOG4308|consensus
Probab=34.80 E-value=8.7 Score=40.91 Aligned_cols=87 Identities=26% Similarity=0.195 Sum_probs=45.6
Q ss_pred CCCccEEeCCCCCCCCCCCchhh---hhccCC-CcEEEcCCCCCCCch--hhh-hcCCC-CCCCeEEecCCCCCCcCCCc
Q psy1142 83 LPDLFALNLSENKLYYPESLISL---AKVIPR-VKILYLAHNNIKDLA--TIR-TLESL-SNLEELRLEKNPWTECFNEQ 154 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l---~~~~p~-L~~L~Ls~N~I~~~~--~L~-~l~~l-~~L~eL~L~gNPl~~~~~~~ 154 (442)
..++++|+|++|.++... ...+ ....+. +..|++.+|++.+.. .+. .+... +.+++|++..|++.+. .
T Consensus 203 ~~~le~L~L~~~~~t~~~-c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~---~ 278 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSS-CALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEK---G 278 (478)
T ss_pred cccHHHHhhhhcCcChHH-HHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCcccc---c
Confidence 456777777777776432 2222 123333 455777777776552 121 22333 4667777777777662 1
Q ss_pred hhhHHHHHhhCCcccccCC
Q psy1142 155 DAYTSEVRKIFPKLLKLDD 173 (442)
Q Consensus 155 ~~y~~~i~~~fP~L~~LDg 173 (442)
..-..+++...+.++.|+.
T Consensus 279 ~~~L~~~l~~~~~l~~l~l 297 (478)
T KOG4308|consen 279 VRDLAEVLVSCRQLEELSL 297 (478)
T ss_pred hHHHHHHHhhhHHHHHhhc
Confidence 2223344444445555543
No 125
>KOG3591|consensus
Probab=34.23 E-value=60 Score=29.70 Aligned_cols=66 Identities=18% Similarity=0.301 Sum_probs=38.0
Q ss_pred eeeeecCCCCCeEEEEEeeeEEEecCCCCCC-----CCCeeeEEEEEEEEeCCC-Cc--eEEE-cceeEeecCChh
Q psy1142 297 FTCDCPLYTPGLIQFSVCGLYEEITTGTKNK-----SKLIRAFNRAFLLVPRSG-GG--FAIT-NDQLFITSATPE 363 (442)
Q Consensus 297 f~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~-----~~~~r~F~RtFvl~p~~~-~~--~~I~-ND~l~ir~~s~~ 363 (442)
..+||..+.|.-|.|.+.|.+-++ +|.+.+ .-..|.|+|.|.|=.+-+ .. =.+- ...|+|.+.-+.
T Consensus 76 V~lDV~~F~PeEl~Vk~~~~~l~V-~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 76 VNLDVHQFKPEELKVKTDDNTLEV-EGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPP 150 (173)
T ss_pred EEEEcccCcccceEEEeCCCEEEE-EeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEEccCCC
Confidence 457999888877777777765555 221110 123699999999933211 11 1122 256778765443
No 126
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=32.00 E-value=3.4e+02 Score=23.48 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhcccccChhhHHhccccC-ceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHH
Q psy1142 205 DILRAFLEQYFALFDTESRAGLIDAYHEN-AQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRA 283 (442)
Q Consensus 205 ~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~-a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~ 283 (442)
+-+.+..++....-.++|-.....+|+++ |+| .++.. ..+..|.+.|...
T Consensus 3 ~eI~~l~~~w~~ai~tgD~~~~~~ly~~d~av~---~Pt~s--------------------------~~~~~g~~~~~~Y 53 (128)
T PF08332_consen 3 QEIAALFDRWNDAIQTGDPETYAKLYAPDVAVF---EPTVS--------------------------NQLREGLEFHKFY 53 (128)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHEEEEEEEE---EGGGT--------------------------TSEEESCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHhhhcCCCeeEe---ccccC--------------------------CceecChHHHHHH
Confidence 34556677777777777999999999999 998 33321 1256789999999
Q ss_pred HHhCC
Q psy1142 284 LRFLP 288 (442)
Q Consensus 284 l~~LP 288 (442)
|..+.
T Consensus 54 F~~~l 58 (128)
T PF08332_consen 54 FDHFL 58 (128)
T ss_dssp HHHTG
T ss_pred Hhccc
Confidence 98543
No 127
>KOG3933|consensus
Probab=31.53 E-value=86 Score=30.93 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=37.1
Q ss_pred cccCCCCEEEEEEeCCCCCccCCHHHHHHHHHHHhhcCCcccceEeCC
Q psy1142 2 IKTVTNHTLIVLVSSATPYVELNNEIKDKIKLVMAKRYNGDNKALDLS 49 (442)
Q Consensus 2 i~~~~~~k~~i~v~~~~P~~~~~~~~~~~l~~~l~~ry~~~~~~LdLs 49 (442)
|..+..++++++|.-..+ .|.+....+++..+.+||+..+-.|-++
T Consensus 163 ~~~p~~RvVvmsvk~~eL--~L~ehq~~klr~Lvg~RY~~~tD~~tis 208 (296)
T KOG3933|consen 163 IRHPNSRVVVMSVKVKEL--GLSEHQRKKLRRLVGKRYNKTTDLLTIS 208 (296)
T ss_pred ccCCCCceEEEEEEeccc--CccHHHHHHHHHHhhhccCCCCCeEEEe
Confidence 678889999988875333 5668899999999999999987777655
No 128
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=31.03 E-value=28 Score=25.54 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=17.0
Q ss_pred HhCCCHHHHHHHHHhcCCCH
Q psy1142 401 VSGMNLNFSEKCLNEVQWDY 420 (442)
Q Consensus 401 ~Tgmn~~~s~~cL~~~~Wd~ 420 (442)
.+||+.+-|..+|++.||.+
T Consensus 6 ~~g~~~~~a~~~l~~~g~~~ 25 (63)
T PF03793_consen 6 LVGMTYDEAKSILEAAGLTV 25 (63)
T ss_dssp TTTSBHHHHHHHHHHTT-EE
T ss_pred cCCCcHHHHHHHHHHCCCEE
Confidence 48999999999999999954
No 129
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=30.86 E-value=54 Score=19.90 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHhhhhcCCCC
Q psy1142 417 QWDYDQAVTIFNQLKAKNALP 437 (442)
Q Consensus 417 ~Wd~~~A~~~F~~l~~~~~iP 437 (442)
.-+++.|...|.+++..|--|
T Consensus 13 ~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 13 AGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred CCCHHHHHHHHHHHHHcCCCC
Confidence 447899999999999876444
No 130
>PF08991 DUF1903: Domain of unknown function (DUF1903); InterPro: IPR009069 The mature-T-cell-proliferation (MTCP1) putative oncogene was identified for its involvement in t(X:14)(q28;q11)-associated T-cell leukaemia []. MTCP1 is alternatively spliced to produce two completely distinct proteins: the small mitochondrial protein, p8MTCP1, and the protein p13MTCP1, which shows strong homology to another oncogene product, p14TCL1. While p13MTCP1 expression appears to be restricted to mature T-cell proliferation with t(X,14) translocations, the mitochondrial p8MTCP1 is expressed at low levels in most human tissues, and is over-expressed in the proliferating T-cells. The biological function of p8MTCP1 is still unknown, but it appears to play a role in oncogenesis. The structure of p8MTCP1 reveals a disulphide-rich, irregular array of three helices [].; PDB: 2HP8_A 1EI0_A 1HP8_A.
Probab=28.80 E-value=27 Score=26.79 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHhhhh
Q psy1142 408 FSEKCLNEVQWDYDQAVTIFNQLKA 432 (442)
Q Consensus 408 ~s~~cL~~~~Wd~~~A~~~F~~l~~ 432 (442)
-++.||..|+.|-++-...|.+|+.
T Consensus 10 ~iq~CL~~N~Yd~~kC~~~i~~l~~ 34 (67)
T PF08991_consen 10 AIQKCLQRNNYDESKCQDYIDALYE 34 (67)
T ss_dssp HHHHHHHHTTT-CCCTHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3689999999999999999998864
No 131
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=28.69 E-value=1.1e+02 Score=26.40 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy1142 394 MVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFN 428 (442)
Q Consensus 394 mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~ 428 (442)
-|..|... +...+-|++||+++| |+.+|.+...
T Consensus 117 ~v~v~a~a-~v~~eeAr~aleeag-Dl~~A~k~l~ 149 (153)
T COG4008 117 EVEVLADA-FVTPEEAREALEEAG-DLRTAMKILR 149 (153)
T ss_pred HHHHHHHh-cCCHHHHHHHHHHcC-CHHHHHHHHH
Confidence 34444443 499999999999999 9999998754
No 132
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=28.54 E-value=99 Score=26.56 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHH
Q psy1142 393 NMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTI 426 (442)
Q Consensus 393 ~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~ 426 (442)
.=|.-.++|||-..+=+.+.|+++|-|+-.|+-.
T Consensus 86 eDIkLV~eQa~VsreeA~kAL~e~~GDlaeAIm~ 119 (122)
T COG1308 86 EDIKLVMEQAGVSREEAIKALEEAGGDLAEAIMK 119 (122)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 3466778999999999999999999999998743
No 133
>cd00667 ring_hydroxylating_dioxygenases_beta Ring hydroxylating dioxygenase beta subunit. This subunit has a similar structure to NTF-2, Ketosteroid isomerase and scytalone dehydratase.The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonheme iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centers to a terminal dioxygenase. Aromatic-ring-hydroxylating dioxygenases oxidize aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilize a mononuclear non-heme iron center to catalyze the addition of dioxygen to their respective substrates. The active site of these enzymes however is in the alpha sub-unit. No functional role has been attributed to the beta sub-unit except for a structural role.
Probab=26.35 E-value=4.4e+02 Score=22.96 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEe
Q psy1142 203 ARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV 240 (442)
Q Consensus 203 ~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~ 240 (442)
++..+.+|+-+|=...|.++-..+..+|++++.|.+..
T Consensus 2 ~~~~I~~ll~~ya~~LD~~~~~~w~~lft~D~~y~~~~ 39 (160)
T cd00667 2 LQAEVEQFLYREARLLDDRRWDEWLALFAEDCHYWVPA 39 (160)
T ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHhhccccEEEcce
Confidence 35678899999999999988899999999999987543
No 134
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=25.94 E-value=1e+02 Score=25.40 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=23.6
Q ss_pred CCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCC
Q psy1142 84 PDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gN 145 (442)
..|+.|.+.++ +..+.... -..+++|+.+.+.+ .+..+++ ..+..+++|+++.+.+|
T Consensus 35 ~~l~~i~~~~~-~~~i~~~~--F~~~~~l~~i~~~~-~~~~i~~-~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 35 TSLKSINFPNN-LTSIGDNA--FSNCKSLESITFPN-NLKSIGD-NAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp TT-SEEEESST-TSCE-TTT--TTT-TT-EEEEETS-TT-EE-T-TTTTT-TTECEEEETTT
T ss_pred ccccccccccc-ccccceee--eecccccccccccc-ccccccc-ccccccccccccccCcc
Confidence 45556666553 44443211 11344556666643 4444442 23444555666665444
No 135
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.73 E-value=47 Score=42.39 Aligned_cols=31 Identities=29% Similarity=0.515 Sum_probs=27.3
Q ss_pred EcCCCCCCCchhhhhcCCCCCCCeEEecCCCC
Q psy1142 116 YLAHNNIKDLATIRTLESLSNLEELRLEKNPW 147 (442)
Q Consensus 116 ~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl 147 (442)
||++|+|+.+.+ ..+..|++|++|.|.|||+
T Consensus 1 DLSnN~LstLp~-g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKISTIEE-GICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCCccCh-HHhccCCCceEEEeeCCcc
Confidence 689999999886 5677788999999999998
No 136
>PRK10069 3-phenylpropionate dioxygenase subunit beta; Provisional
Probab=25.50 E-value=5.1e+02 Score=23.48 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEE
Q psy1142 201 PEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSL 238 (442)
Q Consensus 201 ~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSl 238 (442)
.+.+..+.+|+.+|=.+.|.++=..+..+|++++.|.+
T Consensus 16 ~~~~~eI~~~l~~eA~lLD~~d~~~Wl~lft~D~~Y~~ 53 (183)
T PRK10069 16 LELHHEISQFLYREARLLDEWRYDDWLALLAEDIHYTM 53 (183)
T ss_pred HHHHHHHHHHHHHHHHHhchhhHHHHHHhhccccEEEc
Confidence 45667899999999999999888999999999987763
No 137
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=25.21 E-value=92 Score=30.80 Aligned_cols=52 Identities=23% Similarity=0.371 Sum_probs=41.6
Q ss_pred HHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHh
Q psy1142 207 LRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRF 286 (442)
Q Consensus 207 ~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~ 286 (442)
..+-++.||..+..+|-..|..+++++++|. ++.. . .-+.|++.|..++..
T Consensus 206 ~~~~v~~~~~a~~~gD~~~l~~Lla~Dv~~~--~p~~--~-------------------------~~~~G~~~v~~~~~~ 256 (324)
T TIGR02960 206 EQDLLERYIAAFESYDLDALTALLHEDAIWE--MPPY--T-------------------------LWYQGRPAIVGFIHT 256 (324)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhcCCeEEE--cCCC--C-------------------------cceeCHHHHHHHHHH
Confidence 3455889999999999999999999999987 2211 0 128999999999998
Q ss_pred C
Q psy1142 287 L 287 (442)
Q Consensus 287 L 287 (442)
+
T Consensus 257 ~ 257 (324)
T TIGR02960 257 V 257 (324)
T ss_pred h
Confidence 7
No 138
>PRK15466 carboxysome structural protein EutK; Provisional
Probab=24.92 E-value=4.9e+02 Score=23.63 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=35.1
Q ss_pred hHHHHHHHHHH-HHHhCCCHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCC
Q psy1142 388 ILIKQNMVKAL-SQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQLKAKNALP 437 (442)
Q Consensus 388 ~~~q~~mv~~~-~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~~~iP 437 (442)
++--+.++..+ +-+-||+.- ..-..-+|-+++|-.+.++|...|.+-
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (166)
T PRK15466 108 AESADELLALLTSVRQGMTAG---EVAAHFGWPLEKARNALEQLFSAGTLR 155 (166)
T ss_pred hhhHHHHHHHHHHHHccccHH---HHHHHhCCcHHHHHHHHHHHHhccchh
Confidence 33345566665 778899863 344566999999999999999988764
No 139
>PF13041 PPR_2: PPR repeat family
Probab=24.36 E-value=80 Score=21.73 Aligned_cols=23 Identities=13% Similarity=0.544 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHhhhhcCCCCccc
Q psy1142 417 QWDYDQAVTIFNQLKAKNALPSEA 440 (442)
Q Consensus 417 ~Wd~~~A~~~F~~l~~~~~iP~eA 440 (442)
..+++.|++.|.++++.| ++|+.
T Consensus 16 ~~~~~~a~~l~~~M~~~g-~~P~~ 38 (50)
T PF13041_consen 16 AGKFEEALKLFKEMKKRG-IKPDS 38 (50)
T ss_pred CcCHHHHHHHHHHHHHcC-CCCCH
Confidence 458899999999999765 66554
No 140
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=23.95 E-value=1.4e+02 Score=23.53 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=21.2
Q ss_pred eeeecCCCCCeEEE-------EEeeeEEEecCCCCCCCCCeeeEEEEEEE
Q psy1142 298 TCDCPLYTPGLIQF-------SVCGLYEEITTGTKNKSKLIRAFNRAFLL 340 (442)
Q Consensus 298 ~vD~~~~~~~~l~i-------~V~G~f~e~~~~~~~~~~~~r~F~RtFvl 340 (442)
.+|+....+.-|.| +|+|.-+.. + ....++|+|+|.|
T Consensus 13 ~~dlpG~~pedi~V~v~~~~L~I~ger~~~-~-----~~~~g~F~R~~~L 56 (81)
T cd06479 13 AVDVSDFSPEDIIVTTSNNQIEVHAEKLAS-D-----GTVMNTFTHKCQL 56 (81)
T ss_pred EEECCCCCHHHeEEEEECCEEEEEEEEecc-C-----CCEEEEEEEEEEC
Confidence 45666655543444 445543321 1 2356899999988
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=23.91 E-value=82 Score=19.24 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHhhhhcC
Q psy1142 418 WDYDQAVTIFNQLKAKN 434 (442)
Q Consensus 418 Wd~~~A~~~F~~l~~~~ 434 (442)
=+++.|...|.+++..|
T Consensus 15 g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 15 GDPDAALQLFDEMKEQG 31 (34)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 36778999999999877
No 142
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=22.50 E-value=1e+02 Score=24.50 Aligned_cols=30 Identities=17% Similarity=0.386 Sum_probs=17.7
Q ss_pred CeeeEEEEEEEEeCCC-CceE--E-EcceeEeec
Q psy1142 330 LIRAFNRAFLLVPRSG-GGFA--I-TNDQLFITS 359 (442)
Q Consensus 330 ~~r~F~RtFvl~p~~~-~~~~--I-~ND~l~ir~ 359 (442)
..|+|.|+|.|-..-. .+.. . -|..|.|.+
T Consensus 48 ~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~ 81 (83)
T cd06477 48 ISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVET 81 (83)
T ss_pred EEEEEEEEEECCCCcchheEEEEEcCCCEEEEEe
Confidence 4589999999943221 1222 2 366677664
No 143
>TIGR03232 benzo_1_2_benB benzoate 1,2-dioxygenase, small subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family should all act on benzoate, but several have additional known activities on various benozate analogs. Some members actually may be named more suitably according to such alternate an activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=22.44 E-value=5.5e+02 Score=22.77 Aligned_cols=137 Identities=12% Similarity=0.124 Sum_probs=73.6
Q ss_pred HHHHHHHhhcccccChhhHHhccccCceEEEEeecCCC-----CCcchhhhcccCcccccCCChhhhhhhhccCHHHHHH
Q psy1142 208 RAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLG-----NNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILR 282 (442)
Q Consensus 208 ~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~-----~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~ 282 (442)
++||-+==.+.|.++=.....+|++++.+-+-...+.. .+....-..-.+|-++ ..|+.+|..|..
T Consensus 2 ~~fl~~EA~LLD~~~~~eWl~L~~eD~~Y~vP~~~~~~~~~~~~~~~~~~~~~d~~~~L-----~~RV~rL~t~~a---- 72 (155)
T TIGR03232 2 QAFLYREARLLDDEQWDDWLECYRADASFWMPAWDDDDQLTEDPQSEISLIYYPNRQGL-----EDRVFRIKTERS---- 72 (155)
T ss_pred HHHHHHHHHHhhhhhHHHHHHhcccCeEEEEEeeeCccccccCCCCceeEEEcCChhHH-----HHHHHHHhcCCc----
Confidence 45655555788886667888999999988765422100 0011111012333332 457777877754
Q ss_pred HHHhCC--CCccCCCCeeeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeEeecC
Q psy1142 283 ALRFLP--ATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSA 360 (442)
Q Consensus 283 ~l~~LP--~t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~ir~~ 360 (442)
+.+-| .|.|-++.+ .+....++. +.|.--|--. .. ........+=.|+..|... +|||+|..=...+-+.
T Consensus 73 -~se~P~srtrh~vsnv--~v~~~~~~~--i~v~s~f~v~-~~-R~~~~~~~~g~~~~~Lr~~-~~~~ki~~r~v~ldn~ 144 (155)
T TIGR03232 73 -SATVPDTRTSHNISNV--EIEEQDGDV--ITVRFNWHTL-SF-RYKTTDSYFGMSRYTIDFS-GESPKIKSKYVVLKND 144 (155)
T ss_pred -eecCCCCeeeEEEcCE--EEEecCCCE--EEEEEEEEEE-EE-cCCCeEEEEEEEEEEEEEc-CCeeEEEEEEEEEecC
Confidence 55577 567888884 443333332 3444444211 11 1101122223466778875 4569888777766554
Q ss_pred C
Q psy1142 361 T 361 (442)
Q Consensus 361 s 361 (442)
.
T Consensus 145 ~ 145 (155)
T TIGR03232 145 Y 145 (155)
T ss_pred C
Confidence 3
No 144
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=21.55 E-value=59 Score=19.41 Aligned_cols=11 Identities=45% Similarity=0.513 Sum_probs=5.1
Q ss_pred CCCeEEecCCC
Q psy1142 136 NLEELRLEKNP 146 (442)
Q Consensus 136 ~L~eL~L~gNP 146 (442)
+|++|.|.+++
T Consensus 3 ~L~~L~l~~C~ 13 (26)
T smart00367 3 NLRELDLSGCT 13 (26)
T ss_pred CCCEeCCCCCC
Confidence 44444444444
No 145
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=21.10 E-value=1.7e+02 Score=29.17 Aligned_cols=56 Identities=25% Similarity=0.236 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHH
Q psy1142 205 DILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRAL 284 (442)
Q Consensus 205 ~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l 284 (442)
....+-++.||..|..+|-..+..++++++.+. .+..+ ..+.|+++|..++
T Consensus 214 ~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv~~~--~p~~~---------------------------~~~~G~~~v~~~~ 264 (339)
T PRK08241 214 PEERALLARYVAAFEAYDVDALVALLTEDATWS--MPPFP---------------------------LWYRGRDAIAAFL 264 (339)
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHhcCCEEEE--cCCCC---------------------------CcccCHHHHHHHH
Confidence 344556788888888889999999999999876 22111 1389999999999
Q ss_pred HhCCC
Q psy1142 285 RFLPA 289 (442)
Q Consensus 285 ~~LP~ 289 (442)
..+..
T Consensus 265 ~~~~~ 269 (339)
T PRK08241 265 AGQCP 269 (339)
T ss_pred Hhhcc
Confidence 98743
Done!