Query psy1142
Match_columns 442
No_of_seqs 300 out of 1907
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 17:57:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jkg_B TAP; NTF2-like domain, 100.0 4.2E-70 1.4E-74 524.7 18.1 246 190-442 1-249 (250)
2 3nv0_A Nuclear RNA export fact 100.0 7.9E-45 2.7E-49 337.6 16.3 176 193-369 2-194 (205)
3 1q40_B MEX67, mRNA export fact 100.0 7E-44 2.4E-48 333.5 14.7 175 193-371 3-217 (219)
4 1of5_A MRNA export factor MEX6 100.0 6.4E-43 2.2E-47 327.1 12.2 173 194-372 1-211 (221)
5 3rw6_A Nuclear RNA export fact 100.0 2.8E-34 9.5E-39 278.5 14.1 181 1-182 83-267 (267)
6 2qiy_A UBP3-associated protein 99.9 9.6E-27 3.3E-31 207.7 7.9 133 202-360 10-149 (154)
7 1oai_A Nuclear RNA export fact 99.9 6.6E-25 2.2E-29 162.4 8.0 55 388-442 4-58 (59)
8 1zo2_A NTF2, nuclear transport 99.9 7.8E-25 2.7E-29 189.5 9.5 117 201-358 9-127 (129)
9 1gy6_A Nuclear transport facto 99.9 1.5E-24 5E-29 187.3 9.4 119 200-360 4-124 (127)
10 3nv0_B NTF2-related export pro 99.9 1.9E-24 6.5E-29 192.0 9.9 117 200-358 30-153 (154)
11 1gy7_A Nuclear transport facto 99.9 1.7E-24 5.9E-29 186.4 8.9 116 203-359 5-123 (125)
12 1jkg_A P15; NTF2-like domain, 99.9 3.2E-24 1.1E-28 188.3 10.3 119 201-360 11-138 (140)
13 3q90_A RAS GTPase-activating p 99.9 2.6E-23 8.9E-28 182.4 9.1 130 197-359 3-136 (140)
14 2jp7_A MRNA export factor MEX6 99.9 2.4E-23 8.3E-28 152.4 5.7 53 388-442 3-55 (57)
15 3ujm_A Rasputin; NTF2-like fol 99.9 4.5E-23 1.6E-27 176.2 7.5 114 204-357 4-119 (120)
16 2je0_A Acidic leucine-rich nuc 99.1 3.8E-10 1.3E-14 98.0 9.3 140 27-174 3-148 (149)
17 2ell_A Acidic leucine-rich nuc 99.0 1.1E-09 3.7E-14 97.1 9.8 144 26-177 9-158 (168)
18 1a9n_A U2A', U2A'; complex (nu 99.0 1.1E-09 3.7E-14 98.2 7.9 92 81-178 61-152 (176)
19 1ds9_A Outer arm dynein; leuci 98.7 5.8E-10 2E-14 101.9 -2.1 93 83-179 92-187 (198)
20 1q42_A MTR2, mRNA transport re 98.6 3.7E-09 1.3E-13 94.4 0.5 114 194-343 17-146 (201)
21 1dce_A Protein (RAB geranylger 98.5 1.5E-07 5.3E-12 100.0 8.6 84 81-172 483-566 (567)
22 3e6j_A Variable lymphocyte rec 98.5 3.3E-07 1.1E-11 85.6 8.5 93 82-178 110-202 (229)
23 2r9u_A Variable lymphocyte rec 98.4 7.8E-07 2.7E-11 79.7 8.1 94 81-177 54-147 (174)
24 1xeu_A Internalin C; cellular 98.3 2E-07 6.9E-12 89.1 3.0 59 84-149 106-164 (263)
25 1of5_B MTR2, YKL186C, mRNA tra 98.3 6.1E-07 2.1E-11 79.3 5.0 100 203-343 15-121 (184)
26 2je0_A Acidic leucine-rich nuc 98.2 2.9E-06 1E-10 73.1 7.7 79 81-172 14-94 (149)
27 3g39_A Variable lymphocyte rec 98.2 1.4E-06 5E-11 77.5 5.7 64 82-148 52-115 (170)
28 2wfh_A SLIT homolog 2 protein 98.2 1.4E-06 4.6E-11 79.4 5.5 65 82-149 52-116 (193)
29 1h6t_A Internalin B; cell adhe 98.2 4.6E-07 1.6E-11 87.8 2.4 76 81-172 131-206 (291)
30 2ell_A Acidic leucine-rich nuc 98.2 2.5E-06 8.7E-11 75.1 7.0 82 79-173 19-102 (168)
31 2r9u_A Variable lymphocyte rec 98.2 1.8E-06 6E-11 77.3 5.7 80 83-172 32-111 (174)
32 1a9n_A U2A', U2A'; complex (nu 98.2 1.6E-06 5.4E-11 77.3 5.3 59 84-148 19-77 (176)
33 3g39_A Variable lymphocyte rec 98.1 3.6E-06 1.2E-10 74.9 7.2 80 83-172 29-108 (170)
34 1v92_A NSFL1 cofactor P47; 3-h 98.1 3.6E-06 1.2E-10 58.6 5.2 40 390-429 4-43 (46)
35 2v9t_B SLIT homolog 2 protein 98.1 2.9E-06 9.8E-11 78.7 5.9 64 83-149 55-118 (220)
36 2o6r_A Variable lymphocyte rec 98.1 3.6E-06 1.2E-10 74.8 6.0 65 82-149 50-114 (177)
37 1w8a_A SLIT protein; signaling 98.1 2E-06 6.9E-11 77.9 4.1 65 82-149 52-116 (192)
38 4ezg_A Putative uncharacterize 98.0 4.1E-06 1.4E-10 75.9 5.8 61 83-148 65-125 (197)
39 1h6t_A Internalin B; cell adhe 98.0 7.4E-06 2.5E-10 79.2 7.9 76 81-172 87-162 (291)
40 3e6j_A Variable lymphocyte rec 98.0 3.5E-06 1.2E-10 78.5 5.4 80 82-172 62-141 (229)
41 2wfh_A SLIT homolog 2 protein 98.0 4.6E-06 1.6E-10 75.8 6.0 79 83-172 30-108 (193)
42 2dal_A Protein KIAA0794; FAS a 98.0 7.5E-06 2.6E-10 60.9 5.9 42 388-429 12-53 (62)
43 2v70_A SLIT-2, SLIT homolog 2 98.0 4.7E-06 1.6E-10 77.2 6.0 65 82-149 55-119 (220)
44 3m19_A Variable lymphocyte rec 98.0 4.9E-06 1.7E-10 78.4 6.0 82 81-172 80-161 (251)
45 1h6u_A Internalin H; cell adhe 98.0 1.3E-05 4.4E-10 78.1 8.6 76 81-172 104-179 (308)
46 2v9t_B SLIT homolog 2 protein 98.0 4.4E-06 1.5E-10 77.4 4.9 66 81-149 77-142 (220)
47 1h6u_A Internalin H; cell adhe 98.0 1.3E-05 4.4E-10 78.1 8.4 61 82-149 83-143 (308)
48 2v70_A SLIT-2, SLIT homolog 2 98.0 4.4E-06 1.5E-10 77.4 4.7 66 81-149 78-143 (220)
49 2o6s_A Variable lymphocyte rec 98.0 7.3E-06 2.5E-10 74.7 6.0 64 83-149 51-114 (208)
50 4ezg_A Putative uncharacterize 98.0 9.3E-06 3.2E-10 73.6 6.6 78 81-172 109-187 (197)
51 1xeu_A Internalin C; cellular 98.0 6.7E-06 2.3E-10 78.4 5.8 75 81-172 82-156 (263)
52 2o6s_A Variable lymphocyte rec 98.0 8E-06 2.7E-10 74.4 6.0 82 81-172 73-154 (208)
53 2dam_A ETEA protein; KIAA0887, 98.0 1.6E-05 5.5E-10 60.0 6.5 49 388-438 15-64 (67)
54 4g8a_A TOLL-like receptor 4; l 98.0 7.2E-06 2.5E-10 86.5 6.3 82 82-172 98-179 (635)
55 4fmz_A Internalin; leucine ric 97.9 1.4E-05 4.8E-10 78.4 7.8 60 82-148 219-278 (347)
56 1m9s_A Internalin B; cell inva 97.9 3.9E-06 1.3E-10 89.9 3.8 61 82-149 129-189 (605)
57 4fmz_A Internalin; leucine ric 97.9 1.6E-05 5.4E-10 78.0 7.9 78 81-172 240-317 (347)
58 1w8a_A SLIT protein; signaling 97.9 7.7E-06 2.6E-10 74.0 4.7 80 84-172 29-108 (192)
59 1m9s_A Internalin B; cell inva 97.9 1.8E-05 6.1E-10 84.8 8.2 61 82-149 85-145 (605)
60 2o6r_A Variable lymphocyte rec 97.9 2E-05 6.7E-10 69.9 7.1 66 81-149 73-138 (177)
61 3e21_A HFAF1, FAS-associated f 97.9 7.5E-06 2.6E-10 56.5 3.2 39 390-428 4-43 (45)
62 3rfs_A Internalin B, repeat mo 97.9 1.2E-05 4.1E-10 76.7 5.7 63 82-149 61-123 (272)
63 3zyj_A Leucine-rich repeat-con 97.9 1.5E-05 5.1E-10 81.3 6.8 80 81-172 182-261 (440)
64 3m19_A Variable lymphocyte rec 97.9 3.2E-05 1.1E-09 72.7 8.6 64 82-148 105-168 (251)
65 3un9_A NLR family member X1; l 97.9 2.7E-05 9.3E-10 78.3 8.5 102 73-177 144-252 (372)
66 2dzl_A Protein FAM100B; UBA-li 97.9 2.9E-05 1E-09 58.3 6.4 43 393-438 19-61 (66)
67 2o6q_A Variable lymphocyte rec 97.8 1.7E-05 5.7E-10 75.5 5.9 82 81-172 106-187 (270)
68 3zyi_A Leucine-rich repeat-con 97.8 2.4E-05 8.3E-10 80.1 7.4 80 81-172 193-272 (452)
69 1ozn_A Reticulon 4 receptor; N 97.8 2.2E-05 7.5E-10 75.0 6.1 82 81-172 126-207 (285)
70 3rfs_A Internalin B, repeat mo 97.8 1.8E-05 6.3E-10 75.3 5.5 77 82-172 39-115 (272)
71 1wwl_A Monocyte differentiatio 97.8 3.3E-05 1.1E-09 75.1 7.4 69 81-149 198-267 (312)
72 1p9a_G Platelet glycoprotein I 97.8 2E-05 6.8E-10 76.2 5.7 64 82-149 75-138 (290)
73 4g8a_A TOLL-like receptor 4; l 97.8 1.2E-05 4E-10 84.8 4.3 82 81-172 73-154 (635)
74 1dce_A Protein (RAB geranylger 97.8 2.5E-05 8.5E-10 83.0 6.8 60 84-149 441-500 (567)
75 2xot_A Amphoterin-induced prot 97.8 1.2E-05 4.1E-10 80.1 4.0 64 83-149 87-150 (361)
76 1p9a_G Platelet glycoprotein I 97.8 2.4E-05 8.3E-10 75.6 5.9 82 81-172 97-178 (290)
77 2o6q_A Variable lymphocyte rec 97.7 2.7E-05 9.1E-10 74.1 5.9 65 82-149 59-123 (270)
78 2xot_A Amphoterin-induced prot 97.7 2.3E-05 7.9E-10 78.0 5.5 81 82-172 62-142 (361)
79 1ozn_A Reticulon 4 receptor; N 97.7 5.7E-05 2E-09 72.1 8.0 63 83-148 104-166 (285)
80 2ca6_A RAN GTPase-activating p 97.7 6.7E-05 2.3E-09 75.0 7.9 86 84-172 159-250 (386)
81 4glp_A Monocyte differentiatio 97.7 3.5E-05 1.2E-09 74.8 5.6 85 82-172 143-230 (310)
82 3o53_A Protein LRIM1, AGAP0063 97.7 3E-05 1E-09 75.6 5.0 60 84-148 191-250 (317)
83 1wwl_A Monocyte differentiatio 97.7 5.9E-05 2E-09 73.3 6.8 84 83-172 148-234 (312)
84 1o6v_A Internalin A; bacterial 97.6 8.9E-05 3E-09 76.1 8.1 61 82-149 88-148 (466)
85 2ca6_A RAN GTPase-activating p 97.6 0.00011 3.8E-09 73.3 8.6 89 81-172 119-222 (386)
86 3o53_A Protein LRIM1, AGAP0063 97.6 1.5E-05 5.1E-10 77.7 2.1 79 82-172 142-220 (317)
87 2ifg_A High affinity nerve gro 97.6 2.4E-05 8.3E-10 76.9 3.6 65 81-149 53-117 (347)
88 3goz_A Leucine-rich repeat-con 97.6 0.00011 3.6E-09 73.0 8.1 65 85-149 168-239 (362)
89 3zyj_A Leucine-rich repeat-con 97.6 3.5E-05 1.2E-09 78.6 4.6 66 81-149 85-150 (440)
90 2z62_A TOLL-like receptor 4, v 97.6 3.3E-05 1.1E-09 73.4 4.0 64 83-149 51-114 (276)
91 2z80_A TOLL-like receptor 2, v 97.6 5.9E-05 2E-09 74.4 6.0 82 82-172 74-155 (353)
92 3zyi_A Leucine-rich repeat-con 97.6 3.6E-05 1.2E-09 78.8 4.3 66 81-149 96-161 (452)
93 2ast_B S-phase kinase-associat 97.6 0.0001 3.4E-09 71.8 7.3 62 82-145 116-178 (336)
94 2z66_A Variable lymphocyte rec 97.6 3.8E-05 1.3E-09 74.1 3.8 81 81-172 147-229 (306)
95 4glp_A Monocyte differentiatio 97.5 8.1E-05 2.8E-09 72.1 6.1 82 81-176 221-306 (310)
96 3v47_A TOLL-like receptor 5B a 97.5 0.00017 5.9E-09 73.2 8.8 84 81-172 76-160 (455)
97 1o6v_A Internalin A; bacterial 97.5 0.00014 4.9E-09 74.6 8.1 76 81-172 284-359 (466)
98 2z80_A TOLL-like receptor 2, v 97.5 4.4E-05 1.5E-09 75.3 4.0 83 81-172 97-180 (353)
99 4b8c_D Glucose-repressible alc 97.5 0.0001 3.5E-09 80.5 7.2 64 81-149 267-330 (727)
100 3v47_A TOLL-like receptor 5B a 97.5 5.5E-05 1.9E-09 76.9 4.7 82 81-172 296-377 (455)
101 1z7x_W Ribonuclease inhibitor; 97.5 0.0003 1E-08 71.4 10.0 85 85-172 86-176 (461)
102 1io0_A Tropomodulin; LRR prote 97.5 0.00013 4.3E-09 65.8 6.4 127 25-172 22-157 (185)
103 3goz_A Leucine-rich repeat-con 97.5 0.00021 7.1E-09 70.9 8.5 91 79-172 75-173 (362)
104 3bz5_A Internalin-J, INLJ; leu 97.5 0.0001 3.5E-09 75.9 6.3 73 81-172 61-133 (457)
105 1ds9_A Outer arm dynein; leuci 97.5 1.1E-05 3.7E-10 73.2 -1.0 61 83-149 47-107 (198)
106 2z66_A Variable lymphocyte rec 97.5 2.5E-05 8.5E-10 75.4 1.4 64 83-149 77-140 (306)
107 3o6n_A APL1; leucine-rich repe 97.5 0.00011 3.6E-09 73.5 5.7 63 83-148 92-154 (390)
108 1z7x_W Ribonuclease inhibitor; 97.5 0.00044 1.5E-08 70.1 10.4 88 82-172 197-290 (461)
109 2z7x_B TOLL-like receptor 1, v 97.4 9.3E-05 3.2E-09 76.7 5.4 67 81-149 321-388 (520)
110 4fcg_A Uncharacterized protein 97.4 0.00012 4.3E-09 71.7 5.9 80 81-173 78-157 (328)
111 3o6n_A APL1; leucine-rich repe 97.4 9.8E-05 3.4E-09 73.7 4.9 82 81-172 66-147 (390)
112 2ifg_A High affinity nerve gro 97.4 0.00017 5.7E-09 70.8 6.5 65 82-149 29-94 (347)
113 2z7x_B TOLL-like receptor 1, v 97.4 9.9E-05 3.4E-09 76.5 4.9 61 83-148 68-128 (520)
114 4fcg_A Uncharacterized protein 97.4 4.8E-05 1.6E-09 74.8 2.3 82 81-172 147-235 (328)
115 3un9_A NLR family member X1; l 97.4 0.0001 3.4E-09 74.1 4.7 92 77-172 94-189 (372)
116 3a79_B TLR6, VLRB.59, TOLL-lik 97.4 0.00013 4.3E-09 76.8 5.6 67 81-149 350-417 (562)
117 2ast_B S-phase kinase-associat 97.4 0.0012 4.1E-08 64.0 12.2 61 83-145 221-282 (336)
118 3bz5_A Internalin-J, INLJ; leu 97.4 0.00021 7.2E-09 73.6 7.0 73 81-172 82-154 (457)
119 2id5_A Lingo-1, leucine rich r 97.4 9.9E-05 3.4E-09 75.7 4.5 81 82-172 78-158 (477)
120 4b8c_D Glucose-repressible alc 97.4 6.9E-05 2.4E-09 81.9 3.2 63 82-149 222-284 (727)
121 1xku_A Decorin; proteoglycan, 97.4 0.00015 5.2E-09 70.6 5.4 44 81-124 142-185 (330)
122 3oja_A Leucine-rich immune mol 97.3 5.6E-05 1.9E-09 78.6 2.0 79 82-172 142-220 (487)
123 2z62_A TOLL-like receptor 4, v 97.3 0.00026 8.9E-09 67.1 6.5 83 81-172 73-155 (276)
124 2id5_A Lingo-1, leucine rich r 97.3 0.00022 7.4E-09 73.1 6.2 82 81-172 101-182 (477)
125 3a79_B TLR6, VLRB.59, TOLL-lik 97.3 0.00015 5E-09 76.3 5.0 63 81-149 73-135 (562)
126 2z81_A CD282 antigen, TOLL-lik 97.3 0.00016 5.3E-09 75.4 5.0 72 82-172 408-479 (549)
127 1xku_A Decorin; proteoglycan, 97.3 0.00027 9.3E-09 68.8 6.3 78 82-172 74-151 (330)
128 3j0a_A TOLL-like receptor 5; m 97.3 0.00037 1.3E-08 77.2 8.0 42 108-149 121-162 (844)
129 3oja_B Anopheles plasmodium-re 97.3 0.00023 7.7E-09 75.6 5.9 64 83-149 122-185 (597)
130 3cvr_A Invasion plasmid antige 97.3 0.00029 9.9E-09 74.8 6.7 56 82-148 98-153 (571)
131 2ft3_A Biglycan; proteoglycan, 97.3 0.00027 9.1E-09 69.0 5.9 65 81-149 214-278 (332)
132 2z81_A CD282 antigen, TOLL-lik 97.3 0.00032 1.1E-08 73.0 6.9 73 84-172 431-503 (549)
133 2xwt_C Thyrotropin receptor; s 97.2 5.2E-05 1.8E-09 70.5 0.4 64 83-149 54-119 (239)
134 3g06_A SSPH2 (leucine-rich rep 97.2 0.00025 8.7E-09 76.1 5.8 12 136-147 285-296 (622)
135 1ziw_A TOLL-like receptor 3; i 97.2 0.00036 1.2E-08 74.7 7.0 65 83-148 503-573 (680)
136 3oja_A Leucine-rich immune mol 97.2 0.0002 6.8E-09 74.4 4.7 62 82-149 167-228 (487)
137 3vq2_A TLR4, TOLL-like recepto 97.2 0.00028 9.6E-09 74.4 5.9 83 81-172 77-159 (606)
138 3oja_B Anopheles plasmodium-re 97.2 0.00021 7.3E-09 75.8 4.9 65 82-149 97-161 (597)
139 2ft3_A Biglycan; proteoglycan, 97.2 0.00037 1.3E-08 68.0 5.8 79 83-172 192-270 (332)
140 2z63_A TOLL-like receptor 4, v 97.1 0.00033 1.1E-08 73.0 5.4 65 82-149 74-138 (570)
141 3rfe_A Platelet glycoprotein I 97.1 0.00062 2.1E-08 57.9 6.0 56 87-148 11-68 (130)
142 3hx8_A MLR2180 protein, putati 97.1 0.0015 5.2E-08 53.9 8.2 120 201-359 2-127 (129)
143 3g06_A SSPH2 (leucine-rich rep 97.1 0.00054 1.8E-08 73.5 6.6 71 83-172 220-290 (622)
144 3e4g_A ATP synthase subunit S, 97.1 0.00031 1.1E-08 63.1 3.8 80 85-174 62-147 (176)
145 1io0_A Tropomodulin; LRR prote 97.1 0.00039 1.3E-08 62.5 4.4 89 81-173 33-128 (185)
146 4ay9_X Follicle-stimulating ho 97.1 0.00016 5.4E-09 71.5 1.9 64 84-149 30-94 (350)
147 2xwt_C Thyrotropin receptor; s 97.0 0.00016 5.5E-09 67.1 1.6 83 81-172 77-162 (239)
148 1ziw_A TOLL-like receptor 3; i 97.0 0.00049 1.7E-08 73.7 5.2 81 82-172 71-151 (680)
149 3rgz_A Protein brassinosteroid 97.0 0.00067 2.3E-08 74.2 6.3 62 82-149 176-237 (768)
150 2p1m_B Transport inhibitor res 97.0 0.00036 1.2E-08 73.2 4.0 83 81-170 453-535 (594)
151 3t6q_A CD180 antigen; protein- 96.9 0.00098 3.3E-08 70.2 6.9 63 83-148 80-142 (606)
152 3t6q_A CD180 antigen; protein- 96.9 0.00041 1.4E-08 73.2 3.7 68 81-149 347-414 (606)
153 1ogq_A PGIP-2, polygalacturona 96.9 0.00045 1.5E-08 67.1 3.7 76 86-172 199-274 (313)
154 3ogk_B Coronatine-insensitive 96.9 0.00031 1.1E-08 73.7 2.8 83 83-172 435-519 (592)
155 4ecn_A Leucine-rich repeat pro 96.9 0.00038 1.3E-08 77.6 3.5 65 81-149 545-609 (876)
156 3e4g_A ATP synthase subunit S, 96.9 0.00066 2.3E-08 61.0 4.4 85 81-170 82-171 (176)
157 3ogk_B Coronatine-insensitive 96.9 0.00065 2.2E-08 71.3 4.8 69 80-149 459-527 (592)
158 2z63_A TOLL-like receptor 4, v 96.9 0.0012 4.2E-08 68.7 6.9 67 81-149 97-163 (570)
159 3j0a_A TOLL-like receptor 5; m 96.9 0.0013 4.4E-08 72.8 7.2 84 81-172 70-154 (844)
160 3cvr_A Invasion plasmid antige 96.9 0.00069 2.4E-08 71.9 4.8 56 83-149 139-194 (571)
161 1ogq_A PGIP-2, polygalacturona 96.8 0.00045 1.5E-08 67.1 2.9 76 85-172 175-250 (313)
162 4eco_A Uncharacterized protein 96.8 0.00095 3.2E-08 71.5 5.3 83 82-172 455-542 (636)
163 3vq2_A TLR4, TOLL-like recepto 96.7 0.0019 6.4E-08 68.1 7.1 67 81-149 101-167 (606)
164 3rgz_A Protein brassinosteroid 96.7 0.00085 2.9E-08 73.4 4.2 65 83-148 99-164 (768)
165 4ecn_A Leucine-rich repeat pro 96.6 0.0018 6.1E-08 72.2 6.3 67 83-149 696-767 (876)
166 4eco_A Uncharacterized protein 96.6 0.001 3.4E-08 71.3 4.2 77 85-172 489-572 (636)
167 1jl5_A Outer protein YOPM; leu 96.6 0.0019 6.6E-08 66.3 6.1 38 84-125 131-168 (454)
168 1jl5_A Outer protein YOPM; leu 96.6 0.0019 6.5E-08 66.3 6.0 57 83-148 172-228 (454)
169 2p1m_B Transport inhibitor res 96.5 0.00097 3.3E-08 69.8 3.1 84 81-172 394-487 (594)
170 4i4k_A Uncharacterized protein 96.5 0.01 3.4E-07 50.9 8.7 120 202-358 16-140 (143)
171 3bq3_A Defective in cullin ned 96.5 0.0032 1.1E-07 60.2 5.9 41 390-430 14-54 (270)
172 3rw6_A Nuclear RNA export fact 96.3 0.00092 3.1E-08 64.1 0.9 61 89-149 148-210 (267)
173 2l2d_A OTU domain-containing p 96.2 0.014 4.8E-07 42.4 6.7 49 390-438 16-66 (73)
174 3d9r_A Ketosteroid isomerase-l 96.2 0.023 7.9E-07 47.0 9.0 120 204-358 10-133 (135)
175 3gzr_A Uncharacterized protein 96.1 0.037 1.3E-06 47.6 10.5 120 204-361 5-133 (146)
176 1pgv_A TMD-1, tropomodulin TMD 96.1 0.019 6.6E-07 52.3 9.0 127 27-173 29-164 (197)
177 2ra8_A Uncharacterized protein 95.8 0.0041 1.4E-07 62.1 3.3 40 109-148 251-292 (362)
178 3h51_A Putative calcium/calmod 95.5 0.12 4E-06 44.4 10.9 126 203-362 18-144 (156)
179 2ra8_A Uncharacterized protein 95.4 0.0029 9.9E-08 63.2 0.3 66 83-149 251-321 (362)
180 3cu3_A Domain of unknown funct 95.3 0.033 1.1E-06 48.8 7.1 120 203-358 14-138 (172)
181 2chc_A Protein RV3472; hypothe 95.1 0.088 3E-06 45.9 9.2 115 203-358 12-132 (170)
182 3b8l_A Uncharacterized protein 95.1 0.058 2E-06 46.7 7.9 123 200-358 23-152 (163)
183 1pgv_A TMD-1, tropomodulin TMD 95.1 0.015 5.1E-07 53.1 4.1 73 76-149 33-112 (197)
184 2rfr_A Uncharacterized protein 94.8 0.14 4.6E-06 43.6 9.3 121 203-362 17-146 (155)
185 4ay9_X Follicle-stimulating ho 94.8 0.024 8.2E-07 55.6 5.0 57 87-149 12-68 (350)
186 2gxf_A Hypothetical protein YY 94.7 0.11 3.9E-06 43.7 8.4 55 205-289 3-57 (142)
187 2cp9_A EF-TS, EF-TSMT, elongat 94.5 0.066 2.2E-06 39.5 5.4 37 393-429 11-47 (64)
188 3sb4_A Hypothetical leucine ri 94.1 0.031 1E-06 54.2 3.8 80 81-172 223-303 (329)
189 1wj7_A Hypothetical protein (R 94.0 0.1 3.4E-06 42.3 6.1 41 389-429 37-77 (104)
190 3rfe_A Platelet glycoprotein I 93.8 0.06 2E-06 45.4 4.7 38 84-123 31-68 (130)
191 2ux0_A Calcium-calmodulin depe 93.8 0.81 2.8E-05 38.2 11.9 124 204-359 12-138 (143)
192 2rgq_A Domain of unknown funct 93.7 0.61 2.1E-05 39.3 10.9 119 201-359 6-129 (144)
193 1z96_A DNA-damage, UBA-domain 93.3 0.12 4.3E-06 33.9 4.6 35 392-427 5-39 (40)
194 4gew_A 5'-tyrosyl-DNA phosphod 93.2 0.068 2.3E-06 53.1 4.6 40 391-430 45-84 (362)
195 3f7s_A Uncharacterized NTF2-li 93.0 0.89 3E-05 37.9 10.9 117 203-357 6-127 (142)
196 3a76_A Gamma-hexachlorocyclohe 92.8 0.2 6.7E-06 44.2 6.6 120 203-358 29-154 (176)
197 3ef8_A Putative scyalone dehyd 92.4 0.34 1.2E-05 41.3 7.4 71 203-303 9-83 (150)
198 3sb4_A Hypothetical leucine ri 92.3 0.068 2.3E-06 51.7 3.2 64 81-149 247-311 (329)
199 3rob_A Uncharacterized conserv 92.1 0.7 2.4E-05 39.2 9.0 121 204-358 16-137 (139)
200 3fka_A Uncharacterized NTF-2 l 92.1 1.1 3.7E-05 36.9 9.9 111 203-358 7-120 (120)
201 2rcd_A Uncharacterized protein 91.4 3.3 0.00011 33.9 12.3 118 200-357 9-126 (129)
202 3er7_A Uncharacterized NTF2-li 90.7 0.44 1.5E-05 40.2 6.1 105 210-357 7-125 (131)
203 3soy_A NTF2-like superfamily p 90.6 0.5 1.7E-05 40.3 6.6 36 202-237 7-42 (145)
204 2owp_A Hypothetical protein BX 90.6 5.5 0.00019 33.0 13.0 121 198-358 4-126 (129)
205 1veg_A NEDD8 ultimate buster-1 90.6 0.7 2.4E-05 35.8 6.6 44 393-439 31-74 (83)
206 3gwr_A Putative calcium/calmod 88.9 1.4 4.7E-05 37.5 8.0 118 207-358 10-128 (144)
207 3bb9_A Putative orphan protein 87.4 1.9 6.7E-05 36.2 8.0 32 205-236 30-61 (148)
208 3b7c_A Uncharacterized protein 86.4 7.2 0.00025 31.4 10.8 110 205-355 5-120 (122)
209 1ify_A HHR23A, UV excision rep 86.2 1.8 6.1E-05 29.9 5.7 40 389-429 6-45 (49)
210 3blz_A NTF2-like protein of un 85.5 4.2 0.00014 33.3 8.9 34 204-237 11-44 (128)
211 2dak_A Ubiquitin carboxyl-term 84.6 1.8 6.2E-05 31.5 5.4 37 392-429 10-46 (63)
212 1vg5_A RSGI RUH-014, rhomboid 84.4 1 3.4E-05 34.1 4.0 37 392-429 30-66 (73)
213 3duk_A NTF2-like protein of un 83.6 3.4 0.00012 34.1 7.5 112 203-358 10-124 (125)
214 3dm8_A Uncharacterized protein 82.9 1.7 5.9E-05 36.4 5.5 60 207-289 6-65 (143)
215 2g3q_A Protein YBL047C; endocy 82.8 1.6 5.6E-05 29.0 4.2 35 392-427 5-39 (43)
216 2knz_A Ubiquilin-4; cytoplasm, 82.2 2.6 8.8E-05 29.6 5.2 40 389-429 9-49 (53)
217 3ke7_A Putative ketosteroid is 82.0 16 0.00054 30.6 11.1 116 200-358 12-130 (134)
218 2di0_A Activating signal coint 81.8 4.8 0.00016 30.1 6.7 48 388-439 10-58 (71)
219 1ohp_A Steroid delta-isomerase 79.8 1.7 5.8E-05 34.4 4.2 55 206-289 6-60 (125)
220 3jum_A Phenazine biosynthesis 79.1 7.4 0.00025 34.7 8.5 91 201-318 37-129 (185)
221 3mso_A Steroid delta-isomerase 78.4 1.5 5.2E-05 37.1 3.6 54 205-287 9-62 (143)
222 2jy5_A Ubiquilin-1; UBA, alter 78.3 3 0.0001 29.1 4.4 35 392-427 13-48 (52)
223 3en8_A Uncharacterized NTF-2 l 78.0 2 6.7E-05 35.6 4.1 54 208-290 8-61 (128)
224 3ff0_A Phenazine biosynthesis 77.8 5.2 0.00018 35.0 6.8 95 194-317 8-106 (163)
225 2a15_A Hypothetical protein RV 76.8 17 0.00057 29.5 9.7 64 206-291 8-71 (139)
226 1vej_A Riken cDNA 4931431F19; 75.9 7.4 0.00025 29.3 6.3 37 392-429 30-67 (74)
227 1wji_A Tudor domain containing 75.4 4.3 0.00015 29.6 4.8 37 392-429 10-46 (63)
228 1oh0_A Steroid delta-isomerase 74.9 2.1 7.2E-05 34.6 3.4 56 205-289 7-62 (131)
229 3ejv_A Uncharacterized protein 74.9 1.7 5.7E-05 38.4 2.9 77 204-302 25-108 (179)
230 3cnx_A Uncharacterized protein 74.3 8.9 0.0003 33.6 7.5 32 204-235 11-42 (170)
231 4fdw_A Leucine rich hypothetic 72.8 3.7 0.00013 41.0 5.2 56 85-145 158-213 (401)
232 2dah_A Ubiquilin-3; UBA domain 72.5 6.4 0.00022 27.7 4.9 35 394-429 12-47 (54)
233 1wiv_A UBP14, ubiquitin-specif 72.0 6.6 0.00023 29.4 5.2 35 393-428 31-65 (73)
234 3f8x_A Putative delta-5-3-keto 71.1 2.6 8.8E-05 36.1 3.1 56 203-287 18-73 (148)
235 2dkl_A Trinucleotide repeat co 70.9 6.8 0.00023 30.3 5.2 37 392-429 22-58 (85)
236 1uli_B Biphenyl dioxygenase sm 70.6 42 0.0014 29.4 11.2 41 200-240 19-59 (187)
237 3gzb_A Putative snoal-like pol 69.7 4.6 0.00016 33.8 4.1 77 209-317 24-100 (154)
238 2bwb_A Ubiquitin-like protein 69.5 7.1 0.00024 26.5 4.4 35 392-427 8-43 (46)
239 2dai_A Ubadc1, ubiquitin assoc 68.5 11 0.00036 29.1 5.8 37 392-429 30-66 (83)
240 1nww_A Limonene-1,2-epoxide hy 68.1 5.1 0.00018 33.2 4.4 53 207-289 24-76 (149)
241 3gzx_B Biphenyl dioxygenase su 67.9 23 0.00079 31.3 8.9 145 200-359 18-174 (186)
242 3eby_A Beta subunit of A putat 67.7 29 0.00098 29.6 9.3 40 201-240 10-49 (163)
243 1wr1_B Ubiquitin-like protein 67.5 9.3 0.00032 27.3 4.9 36 392-428 18-54 (58)
244 3rga_A Epoxide hydrolase; NTF2 67.4 3.6 0.00012 39.1 3.6 58 204-290 137-194 (283)
245 2dag_A Ubiquitin carboxyl-term 67.3 11 0.00037 28.3 5.6 37 392-429 10-47 (74)
246 4h3u_A Hypothetical protein; s 67.3 2.8 9.7E-05 35.6 2.6 51 209-288 29-79 (158)
247 4fdw_A Leucine rich hypothetic 66.8 6.2 0.00021 39.3 5.4 63 81-148 268-335 (401)
248 3dxo_A Uncharacterized snoal-l 64.6 3.7 0.00013 33.4 2.7 49 208-287 6-58 (121)
249 1z1s_A Hypothetical protein PA 63.8 2.7 9.2E-05 36.0 1.8 58 208-290 26-83 (163)
250 2b1x_B Naphthalene dioxygenase 63.8 59 0.002 27.7 10.7 41 200-240 8-48 (172)
251 1tr8_A Conserved protein (MTH1 61.3 12 0.00043 29.9 5.1 33 393-425 67-99 (102)
252 1whc_A RSGI RUH-027, UBA/UBX 3 60.8 10 0.00035 27.6 4.2 35 394-429 12-47 (64)
253 3fh1_A Uncharacterized NTF2-li 60.3 11 0.00036 30.6 4.8 32 206-237 18-49 (129)
254 3ebt_A Uncharacterized NTF2-li 59.9 37 0.0013 26.9 8.1 59 209-290 7-65 (132)
255 3i0y_A Putative polyketide cyc 59.7 4 0.00014 33.4 2.0 54 207-290 10-63 (140)
256 2bng_A MB2760; epoxide hydrola 59.5 10 0.00034 31.6 4.6 55 206-290 16-70 (149)
257 3dmc_A NTF2-like protein; stru 59.3 6.8 0.00023 32.4 3.5 63 200-289 7-69 (134)
258 1vek_A UBP14, ubiquitin-specif 59.2 20 0.0007 27.5 5.9 37 392-429 30-67 (84)
259 2cpw_A CBL-interacting protein 59.0 15 0.00053 26.6 4.9 34 394-428 22-56 (64)
260 3h3h_A Uncharacterized snoal-l 58.8 5.1 0.00017 32.2 2.5 33 205-237 8-40 (122)
261 2k54_A Protein ATU0742; protei 58.7 11 0.00039 29.9 4.7 53 207-288 5-57 (123)
262 3rga_A Epoxide hydrolase; NTF2 57.6 8.1 0.00028 36.6 4.1 55 205-288 6-60 (283)
263 1wgl_A TOLL-interacting protei 57.6 21 0.00073 25.5 5.3 33 401-433 20-52 (59)
264 3e99_A Benzoate 1,2-dioxygenas 56.7 15 0.00052 31.7 5.4 37 204-240 7-43 (164)
265 3g16_A Uncharacterized protein 55.8 10 0.00035 32.7 4.1 58 205-290 10-68 (156)
266 3fgy_A Uncharacterized NTF2-li 55.6 5.2 0.00018 32.5 2.1 55 208-288 8-62 (135)
267 4fs7_A Uncharacterized protein 55.4 9.9 0.00034 37.2 4.5 59 82-145 295-353 (394)
268 3f7x_A Putative polyketide cyc 54.9 3.8 0.00013 34.7 1.1 60 197-290 16-75 (151)
269 3f14_A Uncharacterized NTF2-li 54.7 13 0.00046 29.3 4.4 96 209-341 4-100 (112)
270 1s5a_A Hypothetical protein YE 54.4 7.3 0.00025 32.1 2.9 58 207-289 12-69 (150)
271 2ekk_A UBA domain from E3 ubiq 54.1 24 0.00081 23.7 4.9 35 392-428 10-44 (47)
272 2bmo_B Oxygenase-beta NBDO; ni 53.6 96 0.0033 27.3 10.3 41 200-240 27-68 (194)
273 1wql_B Ethylbenzene dioxygenas 51.9 1.2E+02 0.0041 26.3 11.9 41 200-240 18-58 (186)
274 4h09_A Hypothetical leucine ri 51.8 11 0.00036 36.6 3.9 61 81-145 260-320 (379)
275 4gt6_A Cell surface protein; l 51.6 20 0.00068 34.9 6.0 58 83-145 287-344 (394)
276 3k0z_A Putative polyketide cyc 50.7 30 0.001 29.1 6.3 33 205-237 34-66 (159)
277 1otr_A Protein CUE2; protein-p 50.5 39 0.0013 23.2 5.5 37 395-431 8-45 (49)
278 2r4i_A Uncharacterized protein 49.8 75 0.0026 24.5 8.3 32 205-236 6-37 (123)
279 1tuh_A BAL32A, hypothetical pr 48.4 11 0.00037 31.6 3.0 56 206-287 30-85 (156)
280 3ec9_A Uncharacterized NTF2-li 47.3 8.3 0.00028 31.5 2.0 30 208-237 15-44 (140)
281 3q8g_A CRAL-TRIO domain-contai 45.7 53 0.0018 31.4 7.8 42 388-429 36-84 (320)
282 3flj_A Uncharacterized protein 45.6 19 0.00066 31.0 4.1 51 208-287 21-71 (155)
283 3g8z_A Protein of unknown func 44.3 11 0.00039 31.4 2.5 53 209-287 24-76 (148)
284 3k9o_A Ubiquitin-conjugating e 43.1 28 0.00095 31.1 5.0 39 388-427 160-198 (201)
285 3f8h_A Putative polyketide cyc 41.7 11 0.00036 31.8 1.8 74 211-318 24-103 (150)
286 2dhy_A CUE domain-containing p 41.5 68 0.0023 23.5 5.9 42 392-433 19-61 (67)
287 1vdl_A Ubiquitin carboxyl-term 41.3 89 0.003 23.4 6.5 40 390-429 23-63 (80)
288 2lbc_A Ubiquitin carboxyl-term 39.8 37 0.0013 27.9 4.9 36 392-428 79-114 (126)
289 3ff2_A Uncharacterized cystati 39.4 15 0.0005 29.1 2.3 29 208-236 5-33 (117)
290 4gb5_A Uncharacterized protein 38.8 10 0.00035 31.9 1.3 74 204-303 10-88 (159)
291 2gex_A SNOL; alpha+beta barrel 38.7 26 0.0009 29.0 3.9 31 207-237 6-36 (152)
292 2gey_A ACLR protein; alpha+bet 38.3 22 0.00076 29.8 3.4 31 207-237 6-36 (158)
293 1zl8_A LIN-7; heterodimer, alp 38.1 15 0.00051 25.4 1.7 21 419-439 8-28 (53)
294 3fsd_A NTF2-like protein of un 37.5 1.4E+02 0.0047 23.9 8.2 32 205-236 14-45 (134)
295 1dv0_A DNA repair protein HHR2 37.0 9.5 0.00032 25.9 0.6 32 394-426 7-38 (47)
296 4gt6_A Cell surface protein; l 36.9 31 0.0011 33.5 4.7 59 82-145 263-321 (394)
297 2cwb_A Chimera of immunoglobul 36.7 34 0.0012 27.6 4.0 33 396-429 71-104 (108)
298 4fs7_A Uncharacterized protein 36.6 14 0.00049 36.0 2.1 55 84-145 276-330 (394)
299 3e46_A Ubiquitin-conjugating e 36.4 46 0.0016 31.0 5.5 38 388-426 212-249 (253)
300 3hk4_A MLR7391 protein; NTF2-l 35.5 94 0.0032 25.5 6.9 61 197-288 16-77 (136)
301 2lqt_A Coiled-coil-helix-coile 35.1 20 0.00068 27.6 2.2 25 407-431 21-45 (85)
302 2lva_A Ubiquitin carboxyl-term 41.3 8.1 0.00028 31.9 0.0 43 388-430 15-58 (129)
303 3grd_A Uncharacterized NTF2-su 34.7 8.6 0.0003 31.1 0.1 30 209-238 8-37 (134)
304 3kkg_A Putative snoal-like pol 33.1 25 0.00085 28.8 2.8 31 207-237 11-44 (146)
305 1hp8_A HU-P8; leukemia, cystei 32.5 41 0.0014 24.8 3.5 24 409-432 14-37 (68)
306 4h09_A Hypothetical leucine ri 32.0 46 0.0016 31.9 5.0 63 82-149 238-300 (379)
307 1aua_A Phosphatidylinositol tr 31.7 67 0.0023 30.0 5.9 43 388-430 27-76 (296)
308 3s6n_M SurviVal motor neuron p 31.4 31 0.0011 21.9 2.3 19 420-438 18-36 (37)
309 2crn_A Ubash3A protein; compac 30.7 63 0.0022 23.3 4.3 35 394-429 12-47 (64)
310 3f40_A Uncharacterized NTF2-li 29.8 31 0.0011 27.4 2.8 50 209-289 10-59 (114)
311 1ei0_A P8MTCP1; helix-turn-hel 29.7 29 0.001 22.4 2.0 24 409-432 10-33 (38)
312 3mg1_A OCP, orange carotenoid 27.1 37 0.0013 32.5 3.1 51 206-286 193-243 (323)
313 1tp6_A Hypothetical protein PA 26.3 2.5E+02 0.0085 22.4 9.8 109 206-354 11-125 (128)
314 2f86_B Hypothetical protein K1 25.3 2.8E+02 0.0097 22.7 8.8 32 205-236 12-43 (143)
315 3f9s_A Putative polyketide cyc 24.9 46 0.0016 27.1 3.1 27 209-235 10-37 (146)
316 2cp8_A NEXT to BRCA1 gene 1 pr 24.4 1.8E+02 0.0063 20.2 5.7 38 394-431 12-49 (54)
317 2gbw_B Biphenyl 2,3-dioxygenas 20.4 68 0.0023 27.5 3.3 40 200-239 9-49 (174)
No 1
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=100.00 E-value=4.2e-70 Score=524.71 Aligned_cols=246 Identities=36% Similarity=0.643 Sum_probs=167.5
Q ss_pred CCCCCCCCcCChhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecC---CCCCcchhhhcccCcccccCCCh
Q psy1142 190 LPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQG---LGNNHLLNNMLANSRNLLRIEEP 266 (442)
Q Consensus 190 ~P~~~~~f~~~~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~---~~~~~~~~~Y~~~sRNl~~~~~~ 266 (442)
+|+++++|||++++++++++||++||.+||++||.+|.++|+++|+||+++++. +.+ .+|++|+++||||+|+++.
T Consensus 1 ~p~~~~~f~~~~~~~~~~~~Fv~~Yy~~fD~~~R~~L~~lY~~~s~fS~~~~~~~~~~~~-~~~~~Y~~~sRNl~~~~~~ 79 (250)
T 1jkg_B 1 APPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPAR-SSLAEYFKDSRNVKKLKDP 79 (250)
T ss_dssp CCCCCSCBCSSHHHHHHHHHHHHHHHHHHTSSCGGGGGGTEEEEEEEEEECCCC-------CCCHHHHTTBCCTTTCCCH
T ss_pred CCCcccCccCCHHHHHHHHHHHHHHHHHHCcCcHHHHHHhhCcCcEEEEEeCCCCCCccc-cchhhhhhhccchhcccch
Confidence 478999999999999999999999999999955999999999999999998865 222 5799999999999999999
Q ss_pred hhhhhhhccCHHHHHHHHHhCCCCccCCCCeeeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCC
Q psy1142 267 QRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGG 346 (442)
Q Consensus 267 ~~r~~~l~~G~~~I~~~l~~LP~t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~ 346 (442)
..|++++++|+++|+++|++||+|+|++++|+|||++.++++++|+|||.|+|. ++ ++ .+.+|+|+|||||+|+++|
T Consensus 80 ~~r~~~~~~G~~~I~~~l~~LP~t~H~~~s~~vD~~~~~~~~i~i~V~G~f~e~-~~-~~-~~~~r~F~rtFvL~p~~~~ 156 (250)
T 1jkg_B 80 TLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEV-DG-KS-RDSLRAFTRTFIAVPASNS 156 (250)
T ss_dssp HHHHHHSEESHHHHHHHHTTSCCEEECGGGCEEEEEEECSSCEEEEEEEEEEEC-SS-TT-TTCEEEEEEEEEEEECTTS
T ss_pred hhhhhhhccCHHHHHHHHHhCCCeeEeccceEEeeeecCCCEEEEEEEEEEEEC-CC-CC-CCCceeeEEEEEEEECCCC
Confidence 999999999999999999999999999999999999998899999999999997 43 22 4579999999999998777
Q ss_pred ceEEEcceeEeecCChhHHhhhhccccCCCCCCCCCCCchhhHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHH
Q psy1142 347 GFAITNDQLFITSATPEQAEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTI 426 (442)
Q Consensus 347 ~~~I~ND~l~ir~~s~~~~~~~~~~~~~~p~~~~~~p~~~~~~~q~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~ 426 (442)
+|+|+||+|+||++++.+++.+++.++|+|++++ +|.+ +++|++||.+|+++||||++||+||||+|||||++|+++
T Consensus 157 ~~~I~ND~l~l~~~s~~~~~~~~~~~~~~p~~~~-~p~~--~~~q~~~v~~~~~~T~mn~~~s~~cL~~~~Wd~~~A~~~ 233 (250)
T 1jkg_B 157 GLCIVNDELFVRNASSEEIQRAFAMPAPTPSSSP-VPTL--SPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQA 233 (250)
T ss_dssp SEEEEEEEEEEEECCHHHHHHHHCCCCCCC--------------------------------------------------
T ss_pred cEEEEeeEEEEECCChhhhhhcccccCCCCCCCC-CCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 8999999999999999998888888888887665 6666 778999999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCccccC
Q psy1142 427 FNQLKAKNALPSEAFI 442 (442)
Q Consensus 427 F~~l~~~~~iP~eAF~ 442 (442)
|++||++|+||+|||+
T Consensus 234 F~~l~~~~~IP~eAF~ 249 (250)
T 1jkg_B 234 FTHLKAKGEIPEVAFM 249 (250)
T ss_dssp ----------------
T ss_pred HHHHHhcCCCCHHHhc
Confidence 9999999999999995
No 2
>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=100.00 E-value=7.9e-45 Score=337.56 Aligned_cols=176 Identities=28% Similarity=0.434 Sum_probs=156.9
Q ss_pred CCCCCcCChhhHHHHHHHHHHHhhcccccC----hhhHHhccc-cCceEEEEeecCC-CC-------CcchhhhcccCcc
Q psy1142 193 PQGSFLCHPEARDILRAFLEQYFALFDTES----RAGLIDAYH-ENAQYSLVVTQGL-GN-------NHLLNNMLANSRN 259 (442)
Q Consensus 193 ~~~~f~~~~~~~~~~~~Fl~~yf~~~D~~~----R~~L~~~Y~-~~a~fSls~~~~~-~~-------~~~~~~Y~~~sRN 259 (442)
.+++|||++++++++++||++||.+||++| |++|+++|| ++|+||||+++.. .+ ..+|+.|+++|||
T Consensus 2 ~~~~ff~s~~~~~~v~~Fl~~yf~~yD~~d~~~~R~~Ll~~Y~~~~a~FSltv~~~~~p~~~~~~~~~~~~~~Y~~~SRN 81 (205)
T 3nv0_A 2 FRNGYYGSDEVRTLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNSTFTHTVVCLWDPIKFVMYPDSESYRMYLRTSHN 81 (205)
T ss_dssp CCSCBCSSHHHHHHHHHHHHHHHHHHCSTTHHHHGGGGGGGBCSSSCEEEEEEECCCCSSSCCCCSCHHHHHHHHHTCCC
T ss_pred CcCcccCCHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHhhCccCcEEEEEecCCCCcccccccccccchhhhhhhccc
Confidence 478999999999999999999999999976 999999999 6899999998863 11 1469999999999
Q ss_pred cccCCCh-hhhhhhhccCHHHHHHHHHhCCCCccCCCCeeeeecCCCCCeEEEEEeeeEEEecCCC---CCCCCCeeeEE
Q psy1142 260 LLRIEEP-QRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGT---KNKSKLIRAFN 335 (442)
Q Consensus 260 l~~~~~~-~~r~~~l~~G~~~I~~~l~~LP~t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~---~~~~~~~r~F~ 335 (442)
|+|+++. ..|+++|++|+++|+++|++||+|+|++++|+||||+.++.+++|+|||.|+|.++++ ++ ...+|+|+
T Consensus 82 l~k~~~~~~~r~~~L~~G~~~I~~~L~~LP~T~H~~~s~~vD~~p~~~~~l~i~V~G~f~e~~~~~~~~~~-~~~~r~Fs 160 (205)
T 3nv0_A 82 VLNQEYFAANRASRISHGAMDIVVALSRLPATIHLMDTFVVDVFLVSATLLGFTLHGTFRDGPSAIKPENT-EEHDNYFT 160 (205)
T ss_dssp GGGCCTTTTSSCCSCEEHHHHHHHHHHHSCCEEECGGGCEEEEEEECSSCEEEEEEEEEEETHHHHSCCSC-STTCEEEE
T ss_pred cccccccHHHHHHHHhhCHHHHHHHHHhCCCeEEecCceEEEEEEeCCCeEEEEEEEEEEEcccccccccC-CCCCceeE
Confidence 9999874 5899999999999999999999999999999999999998999999999999862110 12 46799999
Q ss_pred EEEEEEeCCCCceEEEcceeEeecCChhHHhhhh
Q psy1142 336 RAFLLVPRSGGGFAITNDQLFITSATPEQAEKAF 369 (442)
Q Consensus 336 RtFvl~p~~~~~~~I~ND~l~ir~~s~~~~~~~~ 369 (442)
|||||+|+++|+|+|+||+|+||+++++++++..
T Consensus 161 RtFiL~P~~~g~~~I~ND~L~Ir~~s~~~~~~~~ 194 (205)
T 3nv0_A 161 RTFMVAPRGEGKVAIVSDQLFISSMSKRRGDQYR 194 (205)
T ss_dssp EEEEEEECSTTCEEEEEEEEEEECCCHHHHHHHH
T ss_pred EEEEEEECCCCcEEEEecEEEeeCCCHHHHHHHH
Confidence 9999999977889999999999999999987643
No 3
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Probab=100.00 E-value=7e-44 Score=333.53 Aligned_cols=175 Identities=25% Similarity=0.496 Sum_probs=142.7
Q ss_pred CCCCCcCChhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCC-----------CcchhhhcccCcccc
Q psy1142 193 PQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGN-----------NHLLNNMLANSRNLL 261 (442)
Q Consensus 193 ~~~~f~~~~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~-----------~~~~~~Y~~~sRNl~ 261 (442)
++++||+++++++++++||++||.+||+ ||.+|+.+|+++|+||+++++...+ +.+|+.|+++||||+
T Consensus 3 ~~~~ff~~~~~~~~~~~Fl~~Yy~~fDs-dR~~L~~lY~~~S~fS~s~~~~~p~~~~~~~~~~~~~~~~~~Y~~~SRNl~ 81 (219)
T 1q40_B 3 PETMFFQDEDSRNLATNFIANYLKLWDA-NRSELMILYQNESQFSMQVDSSHPHLIESGNSGYSGSTDFGYYLNNSRNLT 81 (219)
T ss_dssp ----------CHHHHHHHHHHHHHHHHS-CGGGGGGGCCTTCEEEEEECTTCCCCCCCB------SCCCTTTTTTCCCTT
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHHHcc-CHHHHHHhhccccEEEEEecCCCCccccccccccccccchhhhhhhccchh
Confidence 5899999999999999999999999999 9999999999999999999865211 147999999999999
Q ss_pred cCCChhhhhhhhccCHHHHHHHHHhCCCCccCC----CCeeeeecCCC-CCeEEEEEeeeEEEecCCC------------
Q psy1142 262 RIEEPQRQKSLLSVGKADILRALRFLPATKHDL----LSFTCDCPLYT-PGLIQFSVCGLYEEITTGT------------ 324 (442)
Q Consensus 262 ~~~~~~~r~~~l~~G~~~I~~~l~~LP~t~H~~----~sf~vD~~~~~-~~~l~i~V~G~f~e~~~~~------------ 324 (442)
|+++...|++++++|+++|+++|++||+|+|++ ++|+|||++.+ .++++|+|||.|+|.++..
T Consensus 82 ri~~~~~r~~~l~~G~~~I~~~l~~LPkT~H~l~~~~~s~~vD~~~~p~~~~ilitV~G~f~e~~~~~~~~~~~~~~~~~ 161 (219)
T 1q40_B 82 RVSSIKARMAKLSIGQEQIYKSFQQLPKTRHDIIATPELFSMEVYKFPTLNGIMITLHGSFDEVAQPEVDGSASSAPSGP 161 (219)
T ss_dssp TCCSHHHHHHTCEEHHHHHHHHHHTSCEEECCTTTCGGGCEEEEEECSSTTCEEEEEEEEEEEEECCSSCCCC-------
T ss_pred cccchhhhhhhhccCHHHHHHHHHHCCCeeEecccCCCceEEEeEecCCCCeEEEEEEEEEEECCCcccccccccccccc
Confidence 999999999999999999999999999999999 68999999653 4689999999999974210
Q ss_pred ------------CCCCCCeeeEEEEEEEEeCCCCceEEEcceeEeecCChhHHhhhhcc
Q psy1142 325 ------------KNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQAEKAFSS 371 (442)
Q Consensus 325 ------------~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~ir~~s~~~~~~~~~~ 371 (442)
+.....+|+|+|||||+|.++|+|+|+||+|+||+|++.+ ||++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~rsF~RtFvL~P~~~~~~~I~nD~l~ir~~~~~~---aw~~ 217 (219)
T 1q40_B 162 RGGSRYHSGPKHKRIPLSKKSFDRTFVVIPGPNGSMIVASDTLLIRPYTSDF---PWKV 217 (219)
T ss_dssp ---CCSSSSSCCCCCCCCCEEEEEEEEEECC---CCEEEEEEEEEEECCSCC---TTCC
T ss_pred ccccccccccccccccCCccceEEEEEEEECCCCcEEEEeeEEEEecCCCcc---cCCC
Confidence 0012478999999999999778899999999999999877 7764
No 4
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=100.00 E-value=6.4e-43 Score=327.15 Aligned_cols=173 Identities=21% Similarity=0.402 Sum_probs=126.1
Q ss_pred CCCCcCChhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCC--------CcchhhhcccCcccccCCC
Q psy1142 194 QGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGN--------NHLLNNMLANSRNLLRIEE 265 (442)
Q Consensus 194 ~~~f~~~~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~--------~~~~~~Y~~~sRNl~~~~~ 265 (442)
+++||+++++++++++||++||.+||+ ||.+|+.+|+++|+||+++++...+ ...|+.|+++||||+|+++
T Consensus 1 q~~ff~d~~~~~~~~~Fv~~Yy~~fDs-dR~~L~~lY~~~S~fS~s~~~~~p~~~~~~~~~~~~~~~Y~~~SRNl~ri~~ 79 (221)
T 1of5_A 1 QQFFFENDALGQSSTDFATNFLNLWDN-NREQLLNLYSPQSQFSVSVDSTIPPSTVTDSDQTPAFGYYMSSSRNISKVSS 79 (221)
T ss_dssp CTTCCCCCTTCHHHHHHHHHHHHHHHH-CGGGGGGGEEEEEEEEEEECCC------------------------------
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHHcc-CHHHHHHhhCcCcEEEEEecCCCCcccccccccccchhhhhhhccchhcccc
Confidence 478999999999999999999999999 9999999999999999999865211 1579999999999999999
Q ss_pred hhhhhhhhccCHHHHHHHHHhCCCCccCC----CCeeeeecCCCC-CeEEEEEeeeEEEecCCC----------------
Q psy1142 266 PQRQKSLLSVGKADILRALRFLPATKHDL----LSFTCDCPLYTP-GLIQFSVCGLYEEITTGT---------------- 324 (442)
Q Consensus 266 ~~~r~~~l~~G~~~I~~~l~~LP~t~H~~----~sf~vD~~~~~~-~~l~i~V~G~f~e~~~~~---------------- 324 (442)
...|++++++|+++|+++|++||+|+|++ ++|+|||++.++ ++++|+|||.|+|.++.+
T Consensus 80 ~~~r~~~l~~G~~~I~~~l~~LPkT~H~l~~~~~s~~vD~~~~~~~~~i~itV~G~f~e~~~~~~~~~~~~~~~~~~~~~ 159 (221)
T 1of5_A 80 EKSIQQRLSIGQESINSIFKTLPKTKHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNKKTGKNNYQKNR 159 (221)
T ss_dssp --------CBHHHHHHHHHHHSCCEEECTTTSGGGCEEEEEEEGGGTEEEEEEEEEEEEC--------------------
T ss_pred hhhhhhhhccCHHHHHHHHHhCCCeeEecccCCCceEEEeEEcCCCCeEEEEEEEEEEECCCcccccccccccccccccc
Confidence 99999999999999999999999999999 579999999876 599999999999973210
Q ss_pred ------C---CCCCCeeeEEEEEEEEeCCCCceEEEcceeEeecCChhHHhhhhccc
Q psy1142 325 ------K---NKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQAEKAFSSQ 372 (442)
Q Consensus 325 ------~---~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~ir~~s~~~~~~~~~~~ 372 (442)
+ .....+|+|+|||||+|. +|+|+|+||+|+||+|++. ||+++
T Consensus 160 ~~~~~~~~~~~~~~~~rsF~RTFvL~P~-~~~~~I~nD~l~ir~~s~~----aw~~~ 211 (221)
T 1of5_A 160 RYNHGYNSTSNNKLSKKSFDRTWVIVPM-NNSVIIASDLLTVRAYSTG----AWKTA 211 (221)
T ss_dssp ---------CCSCCEEEEEEEEEEEEEE-TTEEEEEEEEEEEEECCCC----TTCCS
T ss_pred cccccccccccccCCccceEEEEEEEec-CCeEEEEeeEEEeecCCCc----ccccC
Confidence 0 002368999999999999 7789999999999999986 78753
No 5
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=100.00 E-value=2.8e-34 Score=278.51 Aligned_cols=181 Identities=41% Similarity=0.715 Sum_probs=172.6
Q ss_pred CcccCCCCEEEEEEeC-CCCCc---cCCHHHHHHHHHHHhhcCCcccceEeCCCCCCCccccccCccccCCchhHHHHHH
Q psy1142 1 RIKTVTNHTLIVLVSS-ATPYV---ELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLDRSNVMTSVC 76 (442)
Q Consensus 1 ~i~~~~~~k~~i~v~~-~~P~~---~~~~~~~~~l~~~l~~ry~~~~~~LdLs~l~~dp~L~~~~i~~~ln~~~~~~~~l 76 (442)
+||+++|+||+|+|.| .+|++ +++++++++|+.+|.+||+++++.|||++|+.||+|+.+++++.+|+.+++.+++
T Consensus 83 ~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~~~~~~~l 162 (267)
T 3rw6_A 83 KILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATL 162 (267)
T ss_dssp SCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSHHHHHHHH
T ss_pred EEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHHHHHHHHH
Confidence 6999999999999999 78887 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchh
Q psy1142 77 NIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDA 156 (442)
Q Consensus 77 ~i~~~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~ 156 (442)
+++.+++|+|++|+|++|+|+.+.++..+...+|+|+.|+|++|+|+++.+++.|+++ +|++|+|.|||+|..+++.+.
T Consensus 163 ~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHH
T ss_pred HHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchh
Confidence 9999999999999999999999998877777999999999999999999999999999 999999999999998887789
Q ss_pred hHHHHHhhCCcccccCCccCCCcccc
Q psy1142 157 YTSEVRKIFPKLLKLDDIQLPPPIVF 182 (442)
Q Consensus 157 y~~~i~~~fP~L~~LDg~~v~~~~~~ 182 (442)
|+..++..||+|+.|||.+|++++.|
T Consensus 242 y~~~il~~~P~L~~LDg~~v~p~i~~ 267 (267)
T 3rw6_A 242 YISAIRERFPKLLRLDGHELPPPIAF 267 (267)
T ss_dssp HHHHHHHHCTTCCEESSCBCCCCCCC
T ss_pred HHHHHHHHCcccCeECCcCCCCCCCC
Confidence 99999999999999999999987654
No 6
>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A
Probab=99.93 E-value=9.6e-27 Score=207.67 Aligned_cols=133 Identities=23% Similarity=0.231 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHH
Q psy1142 202 EARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADIL 281 (442)
Q Consensus 202 ~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~ 281 (442)
+..+++.+|+++||.+||+ +|..|..+|+++|+||+.. |...|||..+-. +....++|+++|.
T Consensus 10 ~~~~v~~~Fv~~YY~~~d~-~r~~L~~~Y~~~S~~s~~~------------~~~~s~~~~~d~----~~~~~~~G~~~I~ 72 (154)
T 2qiy_A 10 TVQDICFAFLQNYYERMRT-DPSKLAYFYASTAELTHTN------------YQSKSTNEKDDV----LPTVKVTGRENIN 72 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CGGGGGGGEEEEEEEEEEC------------TTCC----CCSS----CCEEEEESHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhC-CHHHHHHhhCCCcEEEEcc------------cccccccccccc----ccceEeeCHHHHH
Confidence 4779999999999999999 9999999999999999543 233466644322 2245799999999
Q ss_pred HHHHhC--C--CCccCCCCeeeeecCCCC--CeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCC-CceEEEcce
Q psy1142 282 RALRFL--P--ATKHDLLSFTCDCPLYTP--GLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSG-GGFAITNDQ 354 (442)
Q Consensus 282 ~~l~~L--P--~t~H~~~sf~vD~~~~~~--~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~-~~~~I~ND~ 354 (442)
++|.+| | +|+|++.+ +||++..+ ++++|+|+|.|++. .+..|+|+|||+|+|.++ |+|+|+||+
T Consensus 73 ~~l~~L~~pf~~~~h~I~s--~D~q~~~~~~~~ilI~V~G~~~~~-------~~~~r~F~qtFvL~p~~~~~~y~I~ND~ 143 (154)
T 2qiy_A 73 KFFSRNDAKVRSLKLKLDT--IDFQYTGHLHKSILIMATGEMFWT-------GTPVYKFCQTFILLPSSNGSTFDITNDI 143 (154)
T ss_dssp HHHHHTHHHHTTEEEEEEE--EEEEEESGGGCEEEEEEEEEEEET-------TCCCEEEEEEEEEEECC---CEEEEEEE
T ss_pred HHHHhccCCCCceEEEEEE--EEEEEccCCCCEEEEEEEEEEEEC-------CCCCceEEEEEEEEEeCCCCcEEEEEEE
Confidence 999999 9 99999988 89998765 89999999999964 247999999999999875 679999999
Q ss_pred eEeecC
Q psy1142 355 LFITSA 360 (442)
Q Consensus 355 l~ir~~ 360 (442)
|++..-
T Consensus 144 fr~~~~ 149 (154)
T 2qiy_A 144 IRFISN 149 (154)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 999863
No 7
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=99.91 E-value=6.6e-25 Score=162.44 Aligned_cols=55 Identities=44% Similarity=0.800 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCccccC
Q psy1142 388 ILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQLKAKNALPSEAFI 442 (442)
Q Consensus 388 ~~~q~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~~~iP~eAF~ 442 (442)
+++|++||.+|+++||||.+||+|||++|||||++|+++|++++++|+||+|||+
T Consensus 4 s~~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~~~IP~eAF~ 58 (59)
T 1oai_A 4 SPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAFM 58 (59)
T ss_dssp CHHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCSCGGGGC
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHhc
Confidence 7799999999999999999999999999999999999999999999999999995
No 8
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2
Probab=99.91 E-value=7.8e-25 Score=189.50 Aligned_cols=117 Identities=23% Similarity=0.344 Sum_probs=103.5
Q ss_pred hhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHH
Q psy1142 201 PEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADI 280 (442)
Q Consensus 201 ~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I 280 (442)
++..+++.+|+++||.+||+ +|..|..+|+++|+|| ++. ..++|+++|
T Consensus 9 p~~~~v~~~Fv~~YY~~~d~-~r~~L~~~Y~~~S~ls--~~g-----------------------------~~~~G~~~I 56 (129)
T 1zo2_A 9 PQFDQIGKQFVQHYYQTFQT-NRPALGGLYGPQSMLT--WED-----------------------------TQFQGQANI 56 (129)
T ss_dssp TTHHHHHHHHHHHHHHHHHH-CGGGGGGGEEEEEEEE--ETT-----------------------------EEEESHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhC-CHHHHHHhhCCCcEEE--ECC-----------------------------ceeccHHHH
Confidence 45789999999999999999 9999999999999998 321 148999999
Q ss_pred HHHHHhCCC--CccCCCCeeeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeEee
Q psy1142 281 LRALRFLPA--TKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFIT 358 (442)
Q Consensus 281 ~~~l~~LP~--t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~ir 358 (442)
.++|.+||. ++|.+.+ +||++..+++++|+|+|.|++. .+..|+|+|||+|+|.++|+|+|+||+|++.
T Consensus 57 ~~~l~~Lp~~~~~h~i~t--~D~qp~~~~gilI~V~G~~~~~-------~~~~~~F~qtF~L~p~~~~~y~I~nD~fR~~ 127 (129)
T 1zo2_A 57 VNKFNSLNFQRVQFEITR--VDCQPSPNNGSIVFVTGDVRID-------DGQPLKFSQVFNLMPSGNGGFMIFNDLFRLN 127 (129)
T ss_dssp HHHHHHHCCSCEEEEEEE--EEEEECTBSSEEEEEEEEEEET-------TCCCEEEEEEEEEEECSSSCEEEEEEEEEEC
T ss_pred HHHHHhCCCcceEEEEEE--EEEEEeCCCcEEEEEEEEEEEC-------CCCcceEEEEEEEEEcCCCcEEEEeEEEEEe
Confidence 999999997 5699987 9999987789999999999974 2479999999999998756799999999974
No 9
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A
Probab=99.91 E-value=1.5e-24 Score=187.32 Aligned_cols=119 Identities=25% Similarity=0.326 Sum_probs=104.7
Q ss_pred ChhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHH
Q psy1142 200 HPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKAD 279 (442)
Q Consensus 200 ~~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~ 279 (442)
+++..+++.+|+++||.+||+ +|..|..+|+++|+|| ++. ..++|+++
T Consensus 4 ~p~~~~v~~~Fv~~YY~~~d~-~r~~L~~~Y~~~S~ls--~~g-----------------------------~~~~G~~~ 51 (127)
T 1gy6_A 4 KPIWEQIGSSFIQHYYQLFDN-DRTQLGAIYIDASCLT--WEG-----------------------------QQFQGKAA 51 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-HGGGGGGGEEEEEEEE--ETT-----------------------------EEEESHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhC-CHHHHHHhhCCCcEEE--ECC-----------------------------ccccCHHH
Confidence 356789999999999999999 9999999999999998 321 14899999
Q ss_pred HHHHHHhCCC--CccCCCCeeeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeEe
Q psy1142 280 ILRALRFLPA--TKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFI 357 (442)
Q Consensus 280 I~~~l~~LP~--t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~i 357 (442)
|.++|.+||. ++|++.+ +||++..+++++|+|+|.|++. .+..|+|+|||+|+|.+ |+|+|+||+|++
T Consensus 52 I~~~l~~Lp~~~~~h~i~t--~d~qp~~~~~ili~V~G~~~~~-------~~~~~~F~qtF~L~p~~-~~~~I~nD~fr~ 121 (127)
T 1gy6_A 52 IVEKLSSLPFQKIQHSITA--QDHQPTPDSCIISMVVGQLKAD-------EDPIMGFHQMFLLKNIN-DAWVCTNDMFRL 121 (127)
T ss_dssp HHHHHHHCSCSCEEEEEEE--EEEEECTTSCEEEEEEEEEEET-------TSCCEEEEEEEEEEEET-TEEEEEEEEEEE
T ss_pred HHHHHHhCCCcceEEEEEE--EEEEEeCCCcEEEEEEEEEEEC-------CCCcceEeEEEEEEEeC-CEEEEEEEEEEE
Confidence 9999999995 6999988 9999987789999999999963 24789999999999986 679999999998
Q ss_pred ecC
Q psy1142 358 TSA 360 (442)
Q Consensus 358 r~~ 360 (442)
...
T Consensus 122 ~~~ 124 (127)
T 1gy6_A 122 ALH 124 (127)
T ss_dssp CCC
T ss_pred Ecc
Confidence 643
No 10
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=99.91 E-value=1.9e-24 Score=191.96 Aligned_cols=117 Identities=22% Similarity=0.327 Sum_probs=102.0
Q ss_pred ChhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHH
Q psy1142 200 HPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKAD 279 (442)
Q Consensus 200 ~~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~ 279 (442)
.+.+.+++.+|+++||.+||+ +|..|..+|+++|+|| ++. ....|+++
T Consensus 30 ~~~a~~vg~~FV~qYY~~~d~-~R~~L~~fY~d~S~ls--~~g-----------------------------~~~~G~~~ 77 (154)
T 3nv0_B 30 DEELCNESKKFMDVYYDVMDR-KREKIGFLYTQVSNAV--WNG-----------------------------NPINGYDS 77 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-CGGGGGGGEEEEEEEE--ETT-----------------------------EEEESHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhC-CHHHHHHHhcCCcEEE--ECC-----------------------------eecccHHH
Confidence 355678999999999999999 9999999999999997 431 13799999
Q ss_pred HHHHHHhCCCCccCCCCeeeeecCCC-------CCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEc
Q psy1142 280 ILRALRFLPATKHDLLSFTCDCPLYT-------PGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITN 352 (442)
Q Consensus 280 I~~~l~~LP~t~H~~~sf~vD~~~~~-------~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~N 352 (442)
|+++|.+||+++|++.+ +||++.. +++++|+|+|.|+.. + +..|.|+|||+|+|.+ ++|+|+|
T Consensus 78 I~~~l~~Lp~~~h~I~s--~D~qp~~~~~~~q~~~~ilI~V~G~l~~~--~-----~~~r~F~QtFvL~p~~-~~y~V~N 147 (154)
T 3nv0_B 78 ICEFMKALPSTQHDIQS--LDAQRLPEGVTGDMSGGMLLNVAGAVTVD--G-----DSKRAFTQTLLLGVED-GKYKVKS 147 (154)
T ss_dssp HHHHHHHSCCEEEEEEE--EEEEECCTTCCGGGTTCEEEEEEEEEEET--T-----SCCEEEEEEEEEEEET-TEEEEEE
T ss_pred HHHHHHhCCCeEEEEEE--EEEEEcCccccCCCCCeEEEEEEEEEEEC--C-----CCceeEEEEEEEEEeC-CEEEEEe
Confidence 99999999999999987 8999876 468999999999963 2 3589999999999985 6799999
Q ss_pred ceeEee
Q psy1142 353 DQLFIT 358 (442)
Q Consensus 353 D~l~ir 358 (442)
|+|++-
T Consensus 148 DifR~v 153 (154)
T 3nv0_B 148 DRFRYV 153 (154)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 999874
No 11
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Probab=99.90 E-value=1.7e-24 Score=186.35 Aligned_cols=116 Identities=21% Similarity=0.321 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHH
Q psy1142 203 ARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILR 282 (442)
Q Consensus 203 ~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~ 282 (442)
..+++.+|+++||.+||+ +|..|..+|+++|+|| ++. ..++|+++|.+
T Consensus 5 ~~~v~~~Fv~~YY~~~d~-~r~~L~~~Y~~~S~~s--~~g-----------------------------~~~~G~~~I~~ 52 (125)
T 1gy7_A 5 FNTLAQNFTQFYYNQFDT-DRSQLGNLYRNESMLT--FET-----------------------------SQLQGAKDIVE 52 (125)
T ss_dssp HHHHHHHHHHHHHHHHHH-HGGGGGGGEEEEEEEE--ETT-----------------------------EEEESHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-CHHHHHHhhCCCcEEE--ECC-----------------------------cEecCHHHHHH
Confidence 568999999999999999 9999999999999998 321 14899999999
Q ss_pred HHHhCC--CCccCCCCeeeeecCCC-CCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeEeec
Q psy1142 283 ALRFLP--ATKHDLLSFTCDCPLYT-PGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITS 359 (442)
Q Consensus 283 ~l~~LP--~t~H~~~sf~vD~~~~~-~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~ir~ 359 (442)
+|.+|| +++|++.+ +||++.. +++++|+|+|.|++. + ....|+|+|||+|+|.++ +|+|+||+|++-.
T Consensus 53 ~l~~Lp~~~~~h~i~t--~D~qp~~~~~gili~V~G~~~~~--~----~~~~~~F~qtF~L~p~~~-~~~I~nD~fr~~~ 123 (125)
T 1gy7_A 53 KLVSLPFQKVQHRITT--LDAQPASPYGDVLVMITGDLLID--E----EQNPQRFSQVFHLIPDGN-SYYVFNDIFRLNY 123 (125)
T ss_dssp HHHHSCCSCEEEEEEE--EEEEESSTTSCEEEEEEEEEEET--T----CSSCEEEEEEEEEEEETT-EEEEEEEEEEEEC
T ss_pred HHHhCCCcceEEEEEE--EEEEEecCCCeEEEEEEEEEEEC--C----CCCCccEeEEEEEEEeCC-EEEEEEEEEEEec
Confidence 999999 89999988 8999974 479999999999974 2 237999999999999864 7999999999863
No 12
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A
Probab=99.90 E-value=3.2e-24 Score=188.31 Aligned_cols=119 Identities=18% Similarity=0.306 Sum_probs=103.2
Q ss_pred hhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHH
Q psy1142 201 PEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADI 280 (442)
Q Consensus 201 ~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I 280 (442)
+.+.+++.+|+++||.+||+ +|..|..+|+++|+|| ++. ..++|+++|
T Consensus 11 ~~a~~v~~~Fv~~YY~~~d~-~r~~L~~~Y~~~S~ls--~~g-----------------------------~~~~G~~~I 58 (140)
T 1jkg_A 11 DQACRAAEEFVNVYYTTMDK-RRRLLSRLYMGTATLV--WNG-----------------------------NAVSGQESL 58 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-CGGGGGGGEEEEEEEE--ETT-----------------------------EEEESHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-CHHHHHHhcCCCcEEE--ECC-----------------------------eeecCHHHH
Confidence 45778999999999999999 9999999999999987 321 138999999
Q ss_pred HHHHHhCCCCccCCCCeeeeecCCC------CCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCC---CCceEEE
Q psy1142 281 LRALRFLPATKHDLLSFTCDCPLYT------PGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRS---GGGFAIT 351 (442)
Q Consensus 281 ~~~l~~LP~t~H~~~sf~vD~~~~~------~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~---~~~~~I~ 351 (442)
.++|.+||.++|++.+ +||++.. .++++|+|+|.|+.. .+..|.|+|||+|+|.+ +++|+|+
T Consensus 59 ~~~l~~Lp~~~h~i~s--~d~q~~~~~~~~~~~~ilI~V~G~~~~~-------~~~~r~F~qtF~L~p~~~p~~~~~~I~ 129 (140)
T 1jkg_A 59 SEFFEMLPSSEFQISV--VDCQPVHDEATPSQTTVLVVICGSVKFE-------GNKQRDFNQNFILTAQASPSNTVWKIA 129 (140)
T ss_dssp HHHHHHSCCEEEEEEE--EEEEECCTTTSTTCCEEEEEEEEEEEET-------TSCCEEEEEEEEEEEECCSSSCEEEEE
T ss_pred HHHHHhCCCceeEEEE--EEEEEcCCcccCCCCeEEEEEEEEEEEC-------CCCceeeeEEEEEEecCCCCCCeEEEE
Confidence 9999999999999887 8998874 479999999999943 24789999999999853 2679999
Q ss_pred cceeEeecC
Q psy1142 352 NDQLFITSA 360 (442)
Q Consensus 352 ND~l~ir~~ 360 (442)
||+|++..+
T Consensus 130 nD~frl~~~ 138 (140)
T 1jkg_A 130 SDCFRFQDW 138 (140)
T ss_dssp EEEEEETTT
T ss_pred eeEEEeecC
Confidence 999999876
No 13
>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0
Probab=99.89 E-value=2.6e-23 Score=182.42 Aligned_cols=130 Identities=20% Similarity=0.283 Sum_probs=102.8
Q ss_pred CcCChhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccC
Q psy1142 197 FLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVG 276 (442)
Q Consensus 197 f~~~~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G 276 (442)
.|+++....++..|+++||.+||+ +|..|..+|+++|+|+..... +| .+.....+|
T Consensus 3 ~~~~p~~~~vg~~Fv~~YY~~ld~-~r~~L~~~Y~~~S~l~~~~~~---------------~n--------g~~~~~~~G 58 (140)
T 3q90_A 3 VMEKPSPLLVGREFVRQYYTLLNQ-APDMLHRFYGKNSSYVHGGLD---------------SN--------GKPADAVYG 58 (140)
T ss_dssp -----CHHHHHHHHHHHHHHHHHH-CGGGGGGGEEEEEEEC---------------------------------CCCEEH
T ss_pred cccCCCHHHHHHHHHHHHHHHHhc-CHHHHHhhcccCceEEEEccC---------------CC--------CceeecccC
Confidence 467788899999999999999999 999999999999999843310 01 011124799
Q ss_pred HHHHHHHHHhCCC--CccCCCCeeeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCC--CCceEEEc
Q psy1142 277 KADILRALRFLPA--TKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRS--GGGFAITN 352 (442)
Q Consensus 277 ~~~I~~~l~~LP~--t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~--~~~~~I~N 352 (442)
+++|.++|.+||. ++|.+.+ +||++..+++++|+|+|.++.. .+..|.|+|||+|+|.+ +++|+|+|
T Consensus 59 ~~~I~~~l~~Lp~~~~~~~I~t--vD~Qps~~~gilI~V~G~l~~~-------~~~~~~F~QtF~L~p~~~~~~~y~V~n 129 (140)
T 3q90_A 59 QKEIHRKVMSQNFTNCHTKIRH--VDAHATLNDGVVVQVMGLLSNN-------NQALRRFMQTFVLAPEGSVANKFYVHN 129 (140)
T ss_dssp HHHHHHHHHHTCCCSCEEEEEE--EEEEECGGGCEEEEEEEEEECT-------TCCCEEEEEEEEEEECSSSTTCEEEEE
T ss_pred HHHHHHHHHhCCCccceEEEEe--EEEEEeCCCCEEEEEEEEEecC-------CCCccEEEEEEEEeecCCCCCCEEEEE
Confidence 9999999999997 5788877 9999998889999999999953 24689999999999986 46799999
Q ss_pred ceeEeec
Q psy1142 353 DQLFITS 359 (442)
Q Consensus 353 D~l~ir~ 359 (442)
|+|++-.
T Consensus 130 DifR~~d 136 (140)
T 3q90_A 130 DIFRYQD 136 (140)
T ss_dssp EEEEEGG
T ss_pred EEeEeeh
Confidence 9999764
No 14
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=99.88 E-value=2.4e-23 Score=152.35 Aligned_cols=53 Identities=21% Similarity=0.461 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCccccC
Q psy1142 388 ILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQLKAKNALPSEAFI 442 (442)
Q Consensus 388 ~~~q~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~~~iP~eAF~ 442 (442)
+++|++||.+|+++||||++||+|||++|||||++|+++|+++ +|+||||||+
T Consensus 3 ~~~q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~--~~~IP~eAF~ 55 (57)
T 2jp7_A 3 NPVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQSS--MNGIPREAFV 55 (57)
T ss_dssp CHHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHHS--TTTSCHHHHT
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHH--HcCCCHHHhc
Confidence 6889999999999999999999999999999999999999997 6899999995
No 15
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}
Probab=99.88 E-value=4.5e-23 Score=176.22 Aligned_cols=114 Identities=21% Similarity=0.325 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHH
Q psy1142 204 RDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRA 283 (442)
Q Consensus 204 ~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~ 283 (442)
.+++..|+++||.+||+ +|..|..+|+++|+|+. .+. ....|+++|.++
T Consensus 4 ~~vg~~Fv~~YY~~ld~-~r~~L~~~Y~~~s~~~~-~~~-----------------------------~~~~G~~~I~~~ 52 (120)
T 3ujm_A 4 MSVGREFVRQYYTLLNK-APNHLHRFYNHNSSYIH-GES-----------------------------KLVVGQREIHNR 52 (120)
T ss_dssp CCHHHHHHHHHHHHHHH-CGGGGGGGEEEEEEEEE-TTC-----------------------------CCEESHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-CHHHHhhhecccceEEE-cCC-----------------------------cEecCHHHHHHH
Confidence 46899999999999999 99999999999998861 110 138999999999
Q ss_pred HHhCC--CCccCCCCeeeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeEe
Q psy1142 284 LRFLP--ATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFI 357 (442)
Q Consensus 284 l~~LP--~t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~i 357 (442)
|.+|| +++|.+.+ +||++..+++++|+|+|.++.. .+..|.|+|||+|+|.++++|+|+||+|+.
T Consensus 53 l~~Lpf~~~~~~I~t--~D~Qp~~~~gili~V~G~l~~~-------~~~~r~F~QtF~L~p~~~~~y~V~nDifR~ 119 (120)
T 3ujm_A 53 IQQLNFNDCHAKISQ--VDAQATLGNGVVVQVTGELSND-------GQPMRRFTQTFVLAAQSPKKYYVHNDIFRY 119 (120)
T ss_dssp HHHHCCCSCEEEEEE--EEEEEEGGGEEEEEEEEEEEST-------TCCCEEEEEEEEEEECSTTCEEEEEEEEEE
T ss_pred HHcCCCcceEEEEec--ccceEcCCCCEEEEEEEEEEeC-------CCCCceEEEEEEEEEcCCCCEEEEEEEEec
Confidence 99999 67999977 9999998889999999999853 236899999999999865679999999986
No 16
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.07 E-value=3.8e-10 Score=98.03 Aligned_cols=140 Identities=31% Similarity=0.384 Sum_probs=100.2
Q ss_pred HHHHHHHHHhhcCCcccceEeCCCCCCC-cccccc-CccccCCc----hhHHHHHHHHHhcCCCCccEEeCCCCCCCCCC
Q psy1142 27 IKDKIKLVMAKRYNGDNKALDLSKFYAD-PDFVEA-NMFVPLDR----SNVMTSVCNIINENLPDLFALNLSENKLYYPE 100 (442)
Q Consensus 27 ~~~~l~~~l~~ry~~~~~~LdLs~l~~d-p~L~~~-~i~~~ln~----~~~~~~~l~i~~~~~~~L~~L~Ls~N~l~~l~ 100 (442)
..+++...+..++.+..+.|+|++.... ..+... +-...+.. .+.+..+ ..+ ..+++|+.|+|++|+|+..
T Consensus 3 ~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~n~i~~~- 79 (149)
T 2je0_A 3 MGRRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANL-PKLNKLKKLELSDNRVSGG- 79 (149)
T ss_dssp HHHHHHHHHTTCCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTC-CCCTTCCEEECCSSCCCSC-
T ss_pred HHHHHHHHHhcCCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhh-hcCCCCCEEECCCCcccch-
Confidence 4677788888888889999999986543 111110 00111110 0111111 111 4578999999999999884
Q ss_pred CchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHHHhhCCcccccCCc
Q psy1142 101 SLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDDI 174 (442)
Q Consensus 101 ~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i~~~fP~L~~LDg~ 174 (442)
+......+++|+.|+|++|+|+++.....+.++++|++|+|.+|++.. .+.|+..++..+|+|+.||..
T Consensus 80 -~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~----~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 80 -LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN----LNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp -THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG----STTHHHHHHHHCTTCCEETTB
T ss_pred -HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc----hHHHHHHHHHHCCCcccccCC
Confidence 233444699999999999999998767778889999999999999987 466888899999999999874
No 17
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.00 E-value=1.1e-09 Score=97.08 Aligned_cols=144 Identities=29% Similarity=0.399 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhhcCCcccceEeCCCCCCC-cccccc-CccccCCc----hhHHHHHHHHHhcCCCCccEEeCCCCCCCCC
Q psy1142 26 EIKDKIKLVMAKRYNGDNKALDLSKFYAD-PDFVEA-NMFVPLDR----SNVMTSVCNIINENLPDLFALNLSENKLYYP 99 (442)
Q Consensus 26 ~~~~~l~~~l~~ry~~~~~~LdLs~l~~d-p~L~~~-~i~~~ln~----~~~~~~~l~i~~~~~~~L~~L~Ls~N~l~~l 99 (442)
+....+...+..++-+..+.|+|++.... ..+... +-...+.. .+.+..+ ..+ ..+++|+.|+|++|+|+..
T Consensus 9 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~~~ 86 (168)
T 2ell_A 9 DMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNL-PKLPKLKKLELSENRIFGG 86 (168)
T ss_dssp BHHHHHHHHHTTSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSC-CCCSSCCEEEEESCCCCSC
T ss_pred hHHHHhhhhhccCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhh-ccCCCCCEEECcCCcCchH
Confidence 35667777888888889999999986543 112111 00111111 0111111 111 4578999999999999884
Q ss_pred CCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHHHhhCCcccccCCccCC
Q psy1142 100 ESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLP 177 (442)
Q Consensus 100 ~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i~~~fP~L~~LDg~~v~ 177 (442)
+..+...+++|+.|+|++|+|+++..+..+..+++|++|+|.+|++.. .+.|+..++..+|+|+.||.....
T Consensus 87 --~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~----~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 87 --LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN----LNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp --CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT----STTHHHHHHTTCSSCCEETTEETT
T ss_pred --HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc----hHHHHHHHHHhCccCcEecCCCCC
Confidence 223444699999999999999999888888999999999999999987 466888899999999999987764
No 18
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.96 E-value=1.1e-09 Score=98.16 Aligned_cols=92 Identities=25% Similarity=0.322 Sum_probs=79.7
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|+.+.. .+...+++|+.|+|++|+|.++..+..+..+++|++|+|.+|+++. .+.|+..
T Consensus 61 ~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~----~~~~~~~ 134 (176)
T 1a9n_A 61 PLLRRLKTLLVNNNRICRIGE--GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN----KKHYRLY 134 (176)
T ss_dssp CCCSSCCEEECCSSCCCEECS--CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG----STTHHHH
T ss_pred ccCCCCCEEECCCCcccccCc--chhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC----cHhHHHH
Confidence 457899999999999998753 1224789999999999999999988888899999999999999986 4678888
Q ss_pred HHhhCCcccccCCccCCC
Q psy1142 161 VRKIFPKLLKLDDIQLPP 178 (442)
Q Consensus 161 i~~~fP~L~~LDg~~v~~ 178 (442)
++..+|+|+.||+.....
T Consensus 135 ~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 135 VIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHHCTTCSEETTEECCH
T ss_pred HHHHCCccceeCCCcCCH
Confidence 999999999999988754
No 19
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.73 E-value=5.8e-10 Score=101.92 Aligned_cols=93 Identities=29% Similarity=0.449 Sum_probs=76.1
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCc---hhhHH
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQ---DAYTS 159 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~---~~y~~ 159 (442)
+++|+.|+|++|+|+.++.+ ..+++|+.|+|++|+|.++..+..+..+++|++|+|.+|++....++. ..|+.
T Consensus 92 ~~~L~~L~L~~N~l~~l~~~----~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 167 (198)
T 1ds9_A 92 ADTLEELWISYNQIASLSGI----EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167 (198)
T ss_dssp HHHCSEEEEEEEECCCHHHH----HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred CCcCCEEECcCCcCCcCCcc----ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence 35678888888888776532 267899999999999999888888889999999999999997632221 57888
Q ss_pred HHHhhCCcccccCCccCCCc
Q psy1142 160 EVRKIFPKLLKLDDIQLPPP 179 (442)
Q Consensus 160 ~i~~~fP~L~~LDg~~v~~~ 179 (442)
.++..+|+|+.|||.++.+.
T Consensus 168 ~~~~~l~~L~~Ld~~~i~~~ 187 (198)
T 1ds9_A 168 EVVKRLPNLKKLDGMPVDVD 187 (198)
T ss_dssp HHHHHCSSCSEECCGGGTTT
T ss_pred HHHHhCCCcEEECCcccCHH
Confidence 99999999999999998753
No 20
>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A
Probab=98.64 E-value=3.7e-09 Score=94.40 Aligned_cols=114 Identities=15% Similarity=0.126 Sum_probs=78.5
Q ss_pred CCCCcCChhhHHHHHHHHHHHhhcccccChh-----hHH------hcc----ccCceEEEEeecCCCCCcchhhhcccCc
Q psy1142 194 QGSFLCHPEARDILRAFLEQYFALFDTESRA-----GLI------DAY----HENAQYSLVVTQGLGNNHLLNNMLANSR 258 (442)
Q Consensus 194 ~~~f~~~~~~~~~~~~Fl~~yf~~~D~~~R~-----~L~------~~Y----~~~a~fSls~~~~~~~~~~~~~Y~~~sR 258 (442)
+++..- .+..+.++.|++.||..+|. .|. .+. .+| .+.|.+. |+..|. ++.-
T Consensus 17 ~~~~mn-~~~~r~aE~F~K~yyasLD~-~r~~~~~~ql~~v~~f~~ly~~~l~~~a~li--wNGnp~--------~~~~- 83 (201)
T 1q42_A 17 RGSHMN-QDPTQQLEPFLKRFLASLDL-LYTQPTSQPFPNVESYATQLGSNLKRSSAII--VNGQPI--------IPSP- 83 (201)
T ss_dssp -------CCGGGTHHHHHHHHHHHHSC-CCCCCTTCSSCCHHHHHTTTTTTEEEEEEEE--ETTEEC--------CCCS-
T ss_pred cccccC-CCcchhHHHHHHHHHHHhcc-cccccchhhccchhHHHHHhccccCCccEEE--EcCccc--------cccc-
Confidence 344442 33457899999999999999 775 555 677 6667655 654310 0000
Q ss_pred ccccCCChhhhhhhhccCHHHHHHHHHhCCCCccCCCCeeeeecCCCC-CeEEEEEeeeEEEecCCCCCCCCCeeeEEEE
Q psy1142 259 NLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTP-GLIQFSVCGLYEEITTGTKNKSKLIRAFNRA 337 (442)
Q Consensus 259 Nl~~~~~~~~r~~~l~~G~~~I~~~l~~LP~t~H~~~sf~vD~~~~~~-~~l~i~V~G~f~e~~~~~~~~~~~~r~F~Rt 337 (442)
--.|+++|.++|..||.|+|.+.+ +||++.++ ..++|.|.|.++.. +...+.|.++
T Consensus 84 --------------~~~gr~~fqk~w~~lP~SqHqL~S--lDahpIpGq~T~lI~asGkVrFD-------esgr~~fgQs 140 (201)
T 1q42_A 84 --------------QEDCKLQFQKKWLQTPLSSHQLTS--YDGHLIPGTGTFVVHFSAKVRFD-------QSGRNRLGES 140 (201)
T ss_dssp --------------SCCHHHHHHHHHHTSCCEEEEEEE--EEEEEETTTTEEEEEEEEEEEEB-------CSSCCTTSCC
T ss_pred --------------ccccHHHHHHHHHhCCCcceeeee--eecceeCCCcEEEEEEeEEEEEC-------CCCcCcCCCc
Confidence 037899999999999999999999 99998865 46889999999975 2357889999
Q ss_pred EEEEeC
Q psy1142 338 FLLVPR 343 (442)
Q Consensus 338 Fvl~p~ 343 (442)
|+|.+.
T Consensus 141 f~Lta~ 146 (201)
T 1q42_A 141 ADLFQE 146 (201)
T ss_dssp C-----
T ss_pred EEEecc
Confidence 999865
No 21
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.51 E-value=1.5e-07 Score=100.04 Aligned_cols=84 Identities=24% Similarity=0.347 Sum_probs=64.7
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|+.++.+. .+++|+.|+|++|+|+.+.....+.++++|+.|+|.+|+++. .+.++..
T Consensus 483 ~~l~~L~~L~Ls~N~l~~lp~l~----~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~----~~~~~~~ 554 (567)
T 1dce_A 483 AALRCLEVLQASDNALENVDGVA----NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ----EEGIQER 554 (567)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGT----TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG----SSSCTTH
T ss_pred hcCCCCCEEECCCCCCCCCcccC----CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC----CccHHHH
Confidence 45788888888888888876432 688888999999988877434556667788899999998877 3446667
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
+...+|+|+.||
T Consensus 555 l~~~lp~L~~L~ 566 (567)
T 1dce_A 555 LAEMLPSVSSIL 566 (567)
T ss_dssp HHHHCTTCSEEE
T ss_pred HHHHCcccCccC
Confidence 888888888875
No 22
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.46 E-value=3.3e-07 Score=85.62 Aligned_cols=93 Identities=20% Similarity=0.217 Sum_probs=69.8
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHH
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEV 161 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i 161 (442)
.+++|+.|+|++|+|+.++. .+ ..+++|+.|+|++|+|+.+.. ..+..+++|++|+|.+||+.-...+...++..+
T Consensus 110 ~l~~L~~L~Ls~N~l~~lp~--~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~ 185 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLTELPR--GI-ERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWV 185 (229)
T ss_dssp TCTTCCEEECCSSCCCSCCT--TG-GGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHH
T ss_pred cchhhCeEeccCCcccccCc--cc-ccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCccCCcchhHHHHHHH
Confidence 45677778888887776642 11 377889999999998887764 456778899999999999865322234567778
Q ss_pred HhhCCcccccCCccCCC
Q psy1142 162 RKIFPKLLKLDDIQLPP 178 (442)
Q Consensus 162 ~~~fP~L~~LDg~~v~~ 178 (442)
....+.+..+||..+..
T Consensus 186 ~~~~~~~~~~~g~~v~~ 202 (229)
T 3e6j_A 186 ADHTSIAMRWDGKAVND 202 (229)
T ss_dssp HHCGGGEEEESSSEEEC
T ss_pred HhCccccccccCcccCC
Confidence 88888999999988754
No 23
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.37 E-value=7.8e-07 Score=79.68 Aligned_cols=94 Identities=19% Similarity=0.265 Sum_probs=67.1
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|+.+..- ....+++|+.|+|++|+|+.+.. ..+.++++|+.|+|.+||+.-.-.+-..++..
T Consensus 54 ~~l~~L~~L~Ls~N~l~~i~~~--~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~ 130 (174)
T 2r9u_A 54 DHLVNLQQLYFNSNKLTAIPTG--VFDKLTQLTQLDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNPWDCECRDIMYLRNW 130 (174)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCBCTTBGGGHHHHHH
T ss_pred cCCcCCCEEECCCCCCCccChh--HhCCcchhhEEECCCCccceeCH-HHhccccCCCEEEeCCCCcccccccHHHHHHH
Confidence 4578999999999999998641 12378999999999999997764 33677889999999999987521111223334
Q ss_pred HHhhCCcccccCCccCC
Q psy1142 161 VRKIFPKLLKLDDIQLP 177 (442)
Q Consensus 161 i~~~fP~L~~LDg~~v~ 177 (442)
+...-..+..++|..+.
T Consensus 131 ~~~~~~~~~~~~~~~~~ 147 (174)
T 2r9u_A 131 VADHTSIVMRWDGKAVN 147 (174)
T ss_dssp HHHCGGGEEEESSSEEE
T ss_pred HHhcccccccccccccC
Confidence 44444456667777654
No 24
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.31 E-value=2e-07 Score=89.05 Aligned_cols=59 Identities=36% Similarity=0.412 Sum_probs=32.3
Q ss_pred CCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 84 PDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
++|+.|+|++|+|+.+..+. .+++|+.|+|++|+|+++. .+..+++|++|+|.+|.+..
T Consensus 106 ~~L~~L~L~~N~l~~~~~l~----~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTDSLI----HLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp SSCCEEECCSSCCSBSGGGT----TCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCB
T ss_pred CcccEEEccCCccCCChhhc----CcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcc
Confidence 45666666666665554322 4556666666666665543 23334455555555555554
No 25
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=98.28 E-value=6.1e-07 Score=79.28 Aligned_cols=100 Identities=12% Similarity=0.062 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHhhcccccCh-----hhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCH
Q psy1142 203 ARDILRAFLEQYFALFDTESR-----AGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGK 277 (442)
Q Consensus 203 ~~~~~~~Fl~~yf~~~D~~~R-----~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~ 277 (442)
-.+.++.|+++||...|. .| .-+..++...+ .+.++.. .+-++
T Consensus 15 ~~~aae~FVk~~y~aLd~-~r~~~l~~~lssF~p~~~--~Ii~NG~-----------------------------p~a~p 62 (184)
T 1of5_B 15 QAQITATFTKKILAHLDD-PDSNKLAQFVQLFNPNNC--RIIFNAT-----------------------------PFAQA 62 (184)
T ss_dssp HHHHHHHHHHHHHHHHHC-CCCC-CHHHHTTBCSS-C--CEEETTE-----------------------------EESCH
T ss_pred chhHHHHHHHHHHHHhcc-cccchhhhhhhhcCCCCc--eEEECCe-----------------------------EcCCH
Confidence 457899999999999999 77 44555554433 3335432 24567
Q ss_pred HHHHHHHH-hCCCCccCCCCeeeeecCCCC-CeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeC
Q psy1142 278 ADILRALR-FLPATKHDLLSFTCDCPLYTP-GLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPR 343 (442)
Q Consensus 278 ~~I~~~l~-~LP~t~H~~~sf~vD~~~~~~-~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~ 343 (442)
.+..+.|. ..|.|+|++.+ +||+..++ +.++|+|.|.++.. ++ . .+ .|..+|+|+|.
T Consensus 63 ~~fqeiw~~Q~p~T~hel~S--~D~HVIngsgsivv~VsgkVRFd-Es--g-rd---~fgEtfvLvpn 121 (184)
T 1of5_B 63 TVFLQMWQNQVVQTQHALTG--VDYHAIPGSGTLICNVNCKVRFD-ES--G-RD---KMGQDATVPIQ 121 (184)
T ss_dssp HHHHHHHHHHSCCCEEEEEE--EEEEEETTTTEEEEEEEEEEECC-----------------------
T ss_pred HHHHHHHHhcCCCceEEEEe--EEEEEECCCCeEEEEEEEEEEEC-CC--C-CC---CCCCeEEECCC
Confidence 88888888 99999999999 89997765 57999999999975 22 1 22 79999999987
No 26
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.20 E-value=2.9e-06 Score=73.10 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=44.6
Q ss_pred cCCCCccEEeCCCCCCC--CCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhH
Q psy1142 81 ENLPDLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYT 158 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~--~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~ 158 (442)
...++|+.|+|++|+|+ .++. ....+++|+.|+|++|.|+++ ..+..+++|+.|+|.+|.+... .
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~-------~ 80 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEG---LTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGG-------L 80 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCS---CCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSC-------T
T ss_pred CCCccCeEEEccCCcCChhHHHH---HHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccch-------H
Confidence 33456666666666665 3332 122566666666666666665 4445555666666666666541 2
Q ss_pred HHHHhhCCcccccC
Q psy1142 159 SEVRKIFPKLLKLD 172 (442)
Q Consensus 159 ~~i~~~fP~L~~LD 172 (442)
......+++|+.||
T Consensus 81 ~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 81 EVLAEKCPNLTHLN 94 (149)
T ss_dssp HHHHHHCTTCCEEE
T ss_pred HHHhhhCCCCCEEE
Confidence 23444566666554
No 27
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.19 E-value=1.4e-06 Score=77.46 Aligned_cols=64 Identities=25% Similarity=0.441 Sum_probs=36.4
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWT 148 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~ 148 (442)
.+++|+.|+|++|+|+.+..- .-..+++|+.|+|++|+|+.+.. ..+.++++|+.|+|.+||+.
T Consensus 52 ~l~~L~~L~Ls~N~l~~l~~~--~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 52 RLTQLTRLDLDNNQLTVLPAG--VFDKLTQLTQLSLNDNQLKSIPR-GAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TCTTCSEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred CcccCCEEECCCCCcCccChh--hccCCCCCCEEECCCCccCEeCH-HHhcCCCCCCEEEeCCCCCC
Confidence 355666666666666665431 11245666666666666665442 22445556666666666664
No 28
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.19 E-value=1.4e-06 Score=79.38 Aligned_cols=65 Identities=25% Similarity=0.345 Sum_probs=40.5
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.+++|+.|+|++|+|+.+..- .+ ..+++|+.|+|++|+|+.+.. ..+.++++|+.|+|.+|.+..
T Consensus 52 ~l~~L~~L~Ls~N~i~~i~~~-~f-~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 52 NYKHLTLIDLSNNRISTLSNQ-SF-SNMTQLLTLILSYNRLRCIPP-RTFDGLKSLRLLSLHGNDISV 116 (193)
T ss_dssp GCTTCCEEECCSSCCCCCCTT-TT-TTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCCCB
T ss_pred cccCCCEEECCCCcCCEeCHh-Hc-cCCCCCCEEECCCCccCEeCH-HHhCCCCCCCEEECCCCCCCe
Confidence 456677777777777766531 11 256677777777777766542 235556677777777777664
No 29
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.18 E-value=4.6e-07 Score=87.79 Aligned_cols=76 Identities=29% Similarity=0.365 Sum_probs=55.0
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|+.+..+. .+++|+.|+|++|+|.++.. +..+++|++|+|.+|.+... +
T Consensus 131 ~~l~~L~~L~l~~n~l~~~~~l~----~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l----~----- 194 (291)
T 1h6t_A 131 VHLPQLESLYLGNNKITDITVLS----RLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL----R----- 194 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGG----GCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC----G-----
T ss_pred cCCCCCCEEEccCCcCCcchhhc----cCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCC----h-----
Confidence 34678888888888888874433 67888888888888887664 56677888888888888651 1
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
.+..+++|+.||
T Consensus 195 ~l~~l~~L~~L~ 206 (291)
T 1h6t_A 195 ALAGLKNLDVLE 206 (291)
T ss_dssp GGTTCTTCSEEE
T ss_pred hhccCCCCCEEE
Confidence 145667776664
No 30
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.18 E-value=2.5e-06 Score=75.06 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=64.8
Q ss_pred HhcCCCCccEEeCCCCCCC--CCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchh
Q psy1142 79 INENLPDLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDA 156 (442)
Q Consensus 79 ~~~~~~~L~~L~Ls~N~l~--~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~ 156 (442)
.....++|+.|+|++|+|+ .++.. ...+++|+.|+|++|.|+++ ..+..+++|++|+|.+|.+...
T Consensus 19 ~~~~~~~L~~L~l~~n~l~~~~i~~~---~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~------ 86 (168)
T 2ell_A 19 RNRTPAAVRELVLDNCKSNDGKIEGL---TAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG------ 86 (168)
T ss_dssp TTSCTTSCSEEECCSCBCBTTBCSSC---CGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC------
T ss_pred ccCCcccCCEEECCCCCCChhhHHHH---HHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH------
Confidence 3455688999999999998 66543 24789999999999999987 5667788999999999999873
Q ss_pred hHHHHHhhCCcccccCC
Q psy1142 157 YTSEVRKIFPKLLKLDD 173 (442)
Q Consensus 157 y~~~i~~~fP~L~~LDg 173 (442)
...+...+|+|+.||=
T Consensus 87 -~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 87 -LDMLAEKLPNLTHLNL 102 (168)
T ss_dssp -CCHHHHHCTTCCEEEC
T ss_pred -HHHHHhhCCCCCEEec
Confidence 2245667899988863
No 31
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.16 E-value=1.8e-06 Score=77.33 Aligned_cols=80 Identities=19% Similarity=0.232 Sum_probs=60.4
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHHH
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVR 162 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i~ 162 (442)
.+.|+.|+|++|+|+.+.+- ....+++|+.|+|++|+|+.+.. ..+.++++|++|+|.+|.|... + ...+
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~N~l~~l----~---~~~~ 101 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPG--VFDHLVNLQQLYFNSNKLTAIPT-GVFDKLTQLTQLDLNDNHLKSI----P---RGAF 101 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC----C---TTTT
T ss_pred CCCCcEEEeCCCCccccCHH--HhcCCcCCCEEECCCCCCCccCh-hHhCCcchhhEEECCCCcccee----C---HHHh
Confidence 36799999999999998541 12378999999999999998653 3356788999999999999862 1 1234
Q ss_pred hhCCcccccC
Q psy1142 163 KIFPKLLKLD 172 (442)
Q Consensus 163 ~~fP~L~~LD 172 (442)
..+++|+.||
T Consensus 102 ~~l~~L~~L~ 111 (174)
T 2r9u_A 102 DNLKSLTHIY 111 (174)
T ss_dssp TTCTTCSEEE
T ss_pred ccccCCCEEE
Confidence 5567776664
No 32
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.16 E-value=1.6e-06 Score=77.27 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=26.4
Q ss_pred CCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCC
Q psy1142 84 PDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWT 148 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~ 148 (442)
++|+.|+|++|+|+.++.+ ....++|+.|+|++|.|.++ ..+.++++|++|+|.+|.+.
T Consensus 19 ~~L~~L~l~~n~l~~i~~~---~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENL---GATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRIC 77 (176)
T ss_dssp TSCEEEECTTSCCCSCCCG---GGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCC
T ss_pred CCceEEEeeCCCCchhHHh---hhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCccc
Confidence 3445555555555444322 12233455555555554443 23333444455555555444
No 33
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.14 E-value=3.6e-06 Score=74.86 Aligned_cols=80 Identities=18% Similarity=0.154 Sum_probs=61.6
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHHH
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVR 162 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i~ 162 (442)
.+.|+.|+|++|+|+.+.+- . ...+++|+.|+|++|+|+.+.. ..+.++++|++|+|.+|.|...- ..++
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~-~-~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~-------~~~~ 98 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPG-V-FDRLTQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLNDNQLKSIP-------RGAF 98 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTT-T-TTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC-------TTTT
T ss_pred CCCCcEEEcCCCcCCccChh-h-hcCcccCCEEECCCCCcCccCh-hhccCCCCCCEEECCCCccCEeC-------HHHh
Confidence 36789999999999998541 1 2278999999999999997763 34577889999999999998631 1234
Q ss_pred hhCCcccccC
Q psy1142 163 KIFPKLLKLD 172 (442)
Q Consensus 163 ~~fP~L~~LD 172 (442)
..+++|+.||
T Consensus 99 ~~l~~L~~L~ 108 (170)
T 3g39_A 99 DNLKSLTHIW 108 (170)
T ss_dssp TTCTTCCEEE
T ss_pred cCCCCCCEEE
Confidence 5677777764
No 34
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=98.11 E-value=3.6e-06 Score=58.60 Aligned_cols=40 Identities=20% Similarity=0.395 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHh
Q psy1142 390 IKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQ 429 (442)
Q Consensus 390 ~q~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 429 (442)
.|+++|.+|...||.+.+-|..||+.++||++.|+..|-+
T Consensus 4 ~~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 4 ERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3778999999999999999999999999999999999864
No 35
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.10 E-value=2.9e-06 Score=78.70 Aligned_cols=64 Identities=23% Similarity=0.226 Sum_probs=36.3
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
+++|+.|+|++|+|+.+.+- . ...+++|+.|+|++|+|+.+.. ..+.++++|++|+|.+|.+..
T Consensus 55 l~~L~~L~Ls~N~i~~~~~~-~-~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~N~l~~ 118 (220)
T 2v9t_B 55 YKKLRRIDLSNNQISELAPD-A-FQGLRSLNSLVLYGNKITELPK-SLFEGLFSLQLLLLNANKINC 118 (220)
T ss_dssp CTTCCEEECCSSCCCEECTT-T-TTTCSSCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCCEEECCCCcCCCcCHH-H-hhCCcCCCEEECCCCcCCccCH-hHccCCCCCCEEECCCCCCCE
Confidence 55666666666666655221 1 1245666666666666665442 224455566666666666654
No 36
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.08 E-value=3.6e-06 Score=74.84 Aligned_cols=65 Identities=28% Similarity=0.459 Sum_probs=38.7
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.+++|+.|+|++|+|+.+..- ....+++|+.|+|++|+|+.+.. ..+.++++|++|+|.+|.+..
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~ 114 (177)
T 2o6r_A 50 KLTQLTKLSLSQNQIQSLPDG--VFDKLTKLTILYLHENKLQSLPN-GVFDKLTQLKELALDTNQLKS 114 (177)
T ss_dssp TCTTCSEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSC
T ss_pred CcccccEEECCCCcceEeChh--HccCCCccCEEECCCCCccccCH-HHhhCCcccCEEECcCCcceE
Confidence 356677777777777665431 11256677777777777665442 224455667777777776654
No 37
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.07 E-value=2e-06 Score=77.92 Aligned_cols=65 Identities=28% Similarity=0.359 Sum_probs=37.4
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.+++|+.|+|++|+|+.+.+- . ...+++|+.|+|++|+|+.+.. ..+.++++|++|+|.+|.+..
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~-~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 116 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPN-A-FEGASHIQELQLGENKIKEISN-KMFLGLHQLKTLNLYDNQISC 116 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTT-T-TTTCTTCCEEECCSCCCCEECS-SSSTTCTTCCEEECCSSCCCE
T ss_pred cCCCCCEEECCCCCCCCcCHh-H-cCCcccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCCe
Confidence 356666666666666665321 1 1245666666666666665442 234555666666666666654
No 38
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.05 E-value=4.1e-06 Score=75.94 Aligned_cols=61 Identities=11% Similarity=0.166 Sum_probs=28.6
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWT 148 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~ 148 (442)
+++|+.|+|++|.++.+..+. .+++|+.|+|++|+|.+.. ...+.++++|++|+|.+|.+.
T Consensus 65 l~~L~~L~l~~n~~~~~~~l~----~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~i~ 125 (197)
T 4ezg_A 65 AHNIKDLTINNIHATNYNPIS----GLSNLERLRIMGKDVTSDK-IPNLSGLTSLTLLDISHSAHD 125 (197)
T ss_dssp CTTCSEEEEESCCCSCCGGGT----TCTTCCEEEEECTTCBGGG-SCCCTTCTTCCEEECCSSBCB
T ss_pred CCCCCEEEccCCCCCcchhhh----cCCCCCEEEeECCccCccc-ChhhcCCCCCCEEEecCCccC
Confidence 445555555555554443322 3455555555555554311 222334445555555555554
No 39
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.05 E-value=7.4e-06 Score=79.23 Aligned_cols=76 Identities=38% Similarity=0.380 Sum_probs=56.3
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|+.+..+. .+++|+.|+|++|+|.++.. +..+++|++|+|.+|.+... .
T Consensus 87 ~~l~~L~~L~l~~n~l~~~~~l~----~l~~L~~L~L~~n~i~~~~~---l~~l~~L~~L~l~~n~l~~~---------~ 150 (291)
T 1h6t_A 87 ANLKNLGWLFLDENKVKDLSSLK----DLKKLKSLSLEHNGISDING---LVHLPQLESLYLGNNKITDI---------T 150 (291)
T ss_dssp TTCTTCCEEECCSSCCCCGGGGT----TCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCC---------G
T ss_pred ccCCCCCEEECCCCcCCCChhhc----cCCCCCEEECCCCcCCCChh---hcCCCCCCEEEccCCcCCcc---------h
Confidence 45788899999999888866543 67888888888888888654 44556888888888888762 2
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
.+..+++|+.||
T Consensus 151 ~l~~l~~L~~L~ 162 (291)
T 1h6t_A 151 VLSRLTKLDTLS 162 (291)
T ss_dssp GGGGCTTCSEEE
T ss_pred hhccCCCCCEEE
Confidence 345677777765
No 40
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.05 E-value=3.5e-06 Score=78.52 Aligned_cols=80 Identities=24% Similarity=0.229 Sum_probs=49.8
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHH
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEV 161 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i 161 (442)
.+++|+.|+|++|+|+.+..- ....+++|+.|+|++|+|+.+.. ..+.++++|++|+|.+|.|... + . -
T Consensus 62 ~l~~L~~L~L~~N~l~~i~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~l-p---~----~ 130 (229)
T 3e6j_A 62 SLINLKELYLGSNQLGALPVG--VFDSLTQLTVLDLGTNQLTVLPS-AVFDRLVHLKELFMCCNKLTEL-P---R----G 130 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCSC-C---T----T
T ss_pred CccCCcEEECCCCCCCCcChh--hcccCCCcCEEECCCCcCCccCh-hHhCcchhhCeEeccCCccccc-C---c----c
Confidence 466777777777777766531 11256777777777777776542 2245566777777777777641 1 1 1
Q ss_pred HhhCCcccccC
Q psy1142 162 RKIFPKLLKLD 172 (442)
Q Consensus 162 ~~~fP~L~~LD 172 (442)
+..+++|+.||
T Consensus 131 ~~~l~~L~~L~ 141 (229)
T 3e6j_A 131 IERLTHLTHLA 141 (229)
T ss_dssp GGGCTTCSEEE
T ss_pred cccCCCCCEEE
Confidence 25566666654
No 41
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.04 E-value=4.6e-06 Score=75.80 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=61.9
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHHH
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVR 162 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i~ 162 (442)
.++|+.|+|++|+|+.+.. .+ ..+++|+.|+|++|+|+.+.. ..+.++++|++|+|.+|.|..... ..+
T Consensus 30 ~~~l~~L~L~~n~i~~ip~--~~-~~l~~L~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~-------~~f 98 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTLVPK--EL-SNYKHLTLIDLSNNRISTLSN-QSFSNMTQLLTLILSYNRLRCIPP-------RTF 98 (193)
T ss_dssp CTTCCEEECCSSCCCSCCG--GG-GGCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCT-------TTT
T ss_pred CCCCCEEECCCCcCchhHH--Hh-hcccCCCEEECCCCcCCEeCH-hHccCCCCCCEEECCCCccCEeCH-------HHh
Confidence 3579999999999998862 22 378999999999999998753 457788899999999999987311 234
Q ss_pred hhCCcccccC
Q psy1142 163 KIFPKLLKLD 172 (442)
Q Consensus 163 ~~fP~L~~LD 172 (442)
..+++|+.||
T Consensus 99 ~~l~~L~~L~ 108 (193)
T 2wfh_A 99 DGLKSLRLLS 108 (193)
T ss_dssp TTCTTCCEEE
T ss_pred CCCCCCCEEE
Confidence 5677887765
No 42
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=7.5e-06 Score=60.85 Aligned_cols=42 Identities=14% Similarity=0.305 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHh
Q psy1142 388 ILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQ 429 (442)
Q Consensus 388 ~~~q~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 429 (442)
+..|+++|.+|+..||-+.+-|+.||+.++||++.|+..|-+
T Consensus 12 s~~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 12 SSALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 677888999999999999999999999999999999999975
No 43
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.03 E-value=4.7e-06 Score=77.22 Aligned_cols=65 Identities=26% Similarity=0.341 Sum_probs=41.1
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.+++|+.|+|++|+|+.+..- . ...+++|+.|+|++|+|..+.. ..+.++++|++|+|.+|.+..
T Consensus 55 ~l~~L~~L~L~~N~i~~i~~~-~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~ 119 (220)
T 2v70_A 55 KLPQLRKINFSNNKITDIEEG-A-FEGASGVNEILLTSNRLENVQH-KMFKGLESLKTLMLRSNRITC 119 (220)
T ss_dssp GCTTCCEEECCSSCCCEECTT-T-TTTCTTCCEEECCSSCCCCCCG-GGGTTCSSCCEEECTTSCCCC
T ss_pred cCCCCCEEECCCCcCCEECHH-H-hCCCCCCCEEECCCCccCccCH-hHhcCCcCCCEEECCCCcCCe
Confidence 466777777777777665431 1 1256677777777777765542 235556677777777777765
No 44
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.02 E-value=4.9e-06 Score=78.36 Aligned_cols=82 Identities=26% Similarity=0.372 Sum_probs=55.0
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|+.+.. .....+++|+.|+|++|+|+.+.. ..+.++++|++|+|.+|.+...-. .
T Consensus 80 ~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~-------~ 149 (251)
T 3m19_A 80 DDLTELGTLGLANNQLASLPL--GVFDHLTQLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPA-------G 149 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT-------T
T ss_pred ccCCcCCEEECCCCcccccCh--hHhcccCCCCEEEcCCCcCCCcCh-hHhccCCcccEEECcCCcCCccCH-------H
Confidence 346788888888888887653 112367888888888888876553 234567788888888888875211 1
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
.+..+++|+.||
T Consensus 150 ~~~~l~~L~~L~ 161 (251)
T 3m19_A 150 AFDKLTNLQTLS 161 (251)
T ss_dssp TTTTCTTCCEEE
T ss_pred HcCcCcCCCEEE
Confidence 234567776664
No 45
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.99 E-value=1.3e-05 Score=78.05 Aligned_cols=76 Identities=22% Similarity=0.371 Sum_probs=54.3
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|+.+..+. .+++|+.|+|++|+|.++.. +..+++|++|+|.+|.+... +.
T Consensus 104 ~~l~~L~~L~l~~n~l~~~~~l~----~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~----~~---- 168 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQITDVTPLA----GLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDL----TP---- 168 (308)
T ss_dssp TTCTTCCEEECTTSCCCCCGGGT----TCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC----GG----
T ss_pred cCCCCCCEEECCCCCCCCchhhc----CCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCC----hh----
Confidence 45678888888888888876533 67888888888888877665 44566788888888877651 11
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
+..+++|+.||
T Consensus 169 -l~~l~~L~~L~ 179 (308)
T 1h6u_A 169 -LANLSKLTTLK 179 (308)
T ss_dssp -GTTCTTCCEEE
T ss_pred -hcCCCCCCEEE
Confidence 45667776664
No 46
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.99 E-value=4.4e-06 Score=77.44 Aligned_cols=66 Identities=27% Similarity=0.276 Sum_probs=50.6
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
..+++|+.|+|++|+|+.+..- .-..+++|+.|+|++|+|+.+.. ..+.++++|++|+|.+|.+..
T Consensus 77 ~~l~~L~~L~Ls~N~l~~l~~~--~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 77 QGLRSLNSLVLYGNKITELPKS--LFEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp TTCSSCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSC
T ss_pred hCCcCCCEEECCCCcCCccCHh--HccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCE
Confidence 4467889999999999887641 12367889999999999887642 456677788999999998876
No 47
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.99 E-value=1.3e-05 Score=78.07 Aligned_cols=61 Identities=34% Similarity=0.425 Sum_probs=33.0
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.+++|+.|+|++|+|+.+..+. .+++|+.|+|++|+|+++.. +.++++|++|+|.+|.+..
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~~~----~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~ 143 (308)
T 1h6u_A 83 NLTKITELELSGNPLKNVSAIA----GLQSIKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITN 143 (308)
T ss_dssp TCCSCCEEECCSCCCSCCGGGT----TCTTCCEEECTTSCCCCCGG---GTTCTTCCEEECCSSCCCC
T ss_pred cCCCCCEEEccCCcCCCchhhc----CCCCCCEEECCCCCCCCchh---hcCCCCCCEEECCCCccCc
Confidence 3455555555555555544322 45556666666665555432 4445566666666666554
No 48
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.98 E-value=4.4e-06 Score=77.45 Aligned_cols=66 Identities=24% Similarity=0.256 Sum_probs=48.3
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
..+++|+.|+|++|+|+.+..- ....+++|+.|+|++|+|..+.. ..+.++++|++|+|.+|.+..
T Consensus 78 ~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 143 (220)
T 2v70_A 78 EGASGVNEILLTSNRLENVQHK--MFKGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITT 143 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCGG--GGTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCC
T ss_pred CCCCCCCEEECCCCccCccCHh--HhcCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCE
Confidence 3467888888888888877541 12367888888888888887642 345567788888888888876
No 49
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.97 E-value=7.3e-06 Score=74.71 Aligned_cols=64 Identities=27% Similarity=0.379 Sum_probs=34.2
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
+++|+.|+|++|+|+.+.. .....+++|+.|+|++|+|..+.. ..+.++++|++|+|.+|.+..
T Consensus 51 l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 114 (208)
T 2o6s_A 51 LTSLTQLYLGGNKLQSLPN--GVFNKLTSLTYLNLSTNQLQSLPN-GVFDKLTQLKELALNTNQLQS 114 (208)
T ss_dssp CTTCSEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCC
T ss_pred cccCcEEECCCCccCccCh--hhcCCCCCcCEEECCCCcCCccCH-hHhcCccCCCEEEcCCCcCcc
Confidence 4556666666666665532 111245566666666666654432 223445566666666666554
No 50
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=97.97 E-value=9.3e-06 Score=73.59 Aligned_cols=78 Identities=26% Similarity=0.358 Sum_probs=59.7
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCC-CCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNN-IKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTS 159 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~-I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~ 159 (442)
..+++|+.|+|++|+|++.. ...+. .+++|+.|+|++|. |.++. .+.++++|++|+|.+|.+... +
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~-~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~----~---- 175 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSI-LTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDY----R---- 175 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGG-HHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCC----T----
T ss_pred cCCCCCCEEEecCCccCcHh-HHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcCh----H----
Confidence 34688999999999998632 22233 78999999999998 88876 455677899999999999762 1
Q ss_pred HHHhhCCcccccC
Q psy1142 160 EVRKIFPKLLKLD 172 (442)
Q Consensus 160 ~i~~~fP~L~~LD 172 (442)
.+..+|+|+.||
T Consensus 176 -~l~~l~~L~~L~ 187 (197)
T 4ezg_A 176 -GIEDFPKLNQLY 187 (197)
T ss_dssp -TGGGCSSCCEEE
T ss_pred -HhccCCCCCEEE
Confidence 356788888775
No 51
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.97 E-value=6.7e-06 Score=78.37 Aligned_cols=75 Identities=27% Similarity=0.363 Sum_probs=61.4
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|+.+.++. . ++|+.|+|++|+|+++. .+.++++|++|+|.+|.+... +
T Consensus 82 ~~l~~L~~L~L~~N~l~~l~~~~----~-~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~~----~----- 144 (263)
T 1xeu_A 82 KDLTKLEELSVNRNRLKNLNGIP----S-ACLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKSI----V----- 144 (263)
T ss_dssp TTCSSCCEEECCSSCCSCCTTCC----C-SSCCEEECCSSCCSBSG---GGTTCTTCCEEECTTSCCCBC----G-----
T ss_pred ccCCCCCEEECCCCccCCcCccc----c-CcccEEEccCCccCCCh---hhcCcccccEEECCCCcCCCC----h-----
Confidence 46899999999999999987653 2 89999999999999875 466777999999999999862 1
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
.+..+++|+.||
T Consensus 145 ~l~~l~~L~~L~ 156 (263)
T 1xeu_A 145 MLGFLSKLEVLD 156 (263)
T ss_dssp GGGGCTTCCEEE
T ss_pred HHccCCCCCEEE
Confidence 356678888775
No 52
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.96 E-value=8e-06 Score=74.42 Aligned_cols=82 Identities=26% Similarity=0.295 Sum_probs=56.2
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|+.+..- ....+++|+.|+|++|+|+.+.. ..+.++++|++|+|.+|.+... +. .
T Consensus 73 ~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~----~~---~ 142 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQSLPNG--VFDKLTQLKELALNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSV----PD---G 142 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCC----CT---T
T ss_pred CCCCCcCEEECCCCcCCccCHh--HhcCccCCCEEEcCCCcCcccCH-hHhccCCcCCEEECCCCcccee----CH---H
Confidence 3467888889988888877541 12367888889998888886553 2356677888888888888752 11 2
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
++..+++|+.||
T Consensus 143 ~~~~l~~L~~L~ 154 (208)
T 2o6s_A 143 VFDRLTSLQYIW 154 (208)
T ss_dssp TTTTCTTCCEEE
T ss_pred HhccCCCccEEE
Confidence 334566666654
No 53
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.95 E-value=1.6e-05 Score=59.96 Aligned_cols=49 Identities=10% Similarity=0.188 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHhC-CCHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCc
Q psy1142 388 ILIKQNMVKALSQVSG-MNLNFSEKCLNEVQWDYDQAVTIFNQLKAKNALPS 438 (442)
Q Consensus 388 ~~~q~~mv~~~~~~Tg-mn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~~~iP~ 438 (442)
...|++.|.+|+..|| -+.+-|+.||+.++||++.|+..|-+-. ...|.
T Consensus 15 s~~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~--~~~p~ 64 (67)
T 2dam_A 15 TQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQ--EGSGP 64 (67)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSS--CSSCS
T ss_pred ChhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCC--CCCCC
Confidence 5678899999999999 9999999999999999999999998743 34553
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.95 E-value=7.2e-06 Score=86.45 Aligned_cols=82 Identities=21% Similarity=0.192 Sum_probs=44.7
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHH
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEV 161 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i 161 (442)
.+++|++|+|++|+|+.+.. ..-..+++|+.|+|++|+|+.+.. ..+.++++|++|+|.+|.+...- ....
T Consensus 98 ~L~~L~~L~Ls~N~l~~l~~--~~f~~L~~L~~L~Ls~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~------~~~~ 168 (635)
T 4g8a_A 98 SLSHLSTLILTGNPIQSLAL--GAFSGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFK------LPEY 168 (635)
T ss_dssp TCTTCCEEECTTCCCCEECG--GGGTTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCC------CCGG
T ss_pred CCCCCCEEEccCCcCCCCCH--HHhcCCCCCCEEECCCCcCCCCCh-hhhhcCcccCeeccccCccccCC------Cchh
Confidence 35566666666666665542 111245666666666666665442 12455666777777777665410 0123
Q ss_pred HhhCCcccccC
Q psy1142 162 RKIFPKLLKLD 172 (442)
Q Consensus 162 ~~~fP~L~~LD 172 (442)
...+++|+.||
T Consensus 169 ~~~l~~L~~L~ 179 (635)
T 4g8a_A 169 FSNLTNLEHLD 179 (635)
T ss_dssp GGGCTTCCEEE
T ss_pred hccchhhhhhc
Confidence 34566666654
No 55
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.94 E-value=1.4e-05 Score=78.35 Aligned_cols=60 Identities=23% Similarity=0.384 Sum_probs=29.8
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWT 148 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~ 148 (442)
.+++|+.|+|++|+++.+..+. .+++|+.|+|++|.|.++. .+..+++|++|+|.+|.+.
T Consensus 219 ~~~~L~~L~l~~n~l~~~~~~~----~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~ 278 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKITDLSPLA----NLSQLTWLEIGTNQISDIN---AVKDLTKLKMLNVGSNQIS 278 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGGGT----TCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCC
T ss_pred cCCcCCEEEccCCccCCCcchh----cCCCCCEEECCCCccCCCh---hHhcCCCcCEEEccCCccC
Confidence 3455666666666665554321 4455555555555555432 2333344444444444444
No 56
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.93 E-value=3.9e-06 Score=89.95 Aligned_cols=61 Identities=33% Similarity=0.474 Sum_probs=32.1
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.+++|+.|+|++|+|+.+..+. .+++|+.|+|++|+|.++.. +..+++|++|+|.+|.|..
T Consensus 129 ~l~~L~~L~Ls~N~l~~l~~l~----~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 129 HLPQLESLYLGNNKITDITVLS----RLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp GCTTCSEEECCSSCCCCCGGGG----SCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCB
T ss_pred CCCccCEEECCCCccCCchhhc----ccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCC
Confidence 3566666666666666553322 45555556665555554433 3344455555555555443
No 57
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.93 E-value=1.6e-05 Score=78.00 Aligned_cols=78 Identities=27% Similarity=0.329 Sum_probs=61.9
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|+.+..+. .+++|+.|+|++|+|.++.. +..+++|++|+|.+|++... ...
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~~~----~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~-------~~~ 305 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISDINAVK----DLTKLKMLNVGSNQISDISV---LNNLSQLNSLFLNNNQLGNE-------DME 305 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGGGT----TCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECCSSCCCGG-------GHH
T ss_pred hcCCCCCEEECCCCccCCChhHh----cCCCcCEEEccCCccCCChh---hcCCCCCCEEECcCCcCCCc-------Chh
Confidence 45789999999999999875443 78899999999999988754 55667899999999998752 224
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
.+..+|+|+.||
T Consensus 306 ~l~~l~~L~~L~ 317 (347)
T 4fmz_A 306 VIGGLTNLTTLF 317 (347)
T ss_dssp HHHTCTTCSEEE
T ss_pred HhhccccCCEEE
Confidence 567788888775
No 58
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.90 E-value=7.7e-06 Score=74.04 Aligned_cols=80 Identities=25% Similarity=0.228 Sum_probs=60.8
Q ss_pred CCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHHHh
Q psy1142 84 PDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRK 163 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i~~ 163 (442)
+.|+.|+|++|+|+.+..-. ....+++|+.|+|++|+|+.+. -..+.++++|++|+|.+|.+..... ..+.
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~ 99 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDG-LFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEISN-------KMFL 99 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSC-SGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEECS-------SSST
T ss_pred CCCCEEECCCCcCCccCCcc-ccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcCCccCH-------HHhc
Confidence 47899999999999886421 1237899999999999999864 2456778899999999999987321 1234
Q ss_pred hCCcccccC
Q psy1142 164 IFPKLLKLD 172 (442)
Q Consensus 164 ~fP~L~~LD 172 (442)
.+++|+.||
T Consensus 100 ~l~~L~~L~ 108 (192)
T 1w8a_A 100 GLHQLKTLN 108 (192)
T ss_dssp TCTTCCEEE
T ss_pred CCCCCCEEE
Confidence 567787765
No 59
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.90 E-value=1.8e-05 Score=84.79 Aligned_cols=61 Identities=41% Similarity=0.437 Sum_probs=32.9
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.+++|+.|+|++|+|..+..+. .+++|+.|+|++|+|.++.. +..|++|++|+|.+|.+..
T Consensus 85 ~l~~L~~L~Ls~N~l~~l~~l~----~l~~L~~L~Ls~N~l~~l~~---l~~l~~L~~L~Ls~N~l~~ 145 (605)
T 1m9s_A 85 NLKNLGWLFLDENKIKDLSSLK----DLKKLKSLSLEHNGISDING---LVHLPQLESLYLGNNKITD 145 (605)
T ss_dssp GCTTCCEEECCSSCCCCCTTST----TCTTCCEEECTTSCCCCCGG---GGGCTTCSEEECCSSCCCC
T ss_pred cCCCCCEEECcCCCCCCChhhc----cCCCCCEEEecCCCCCCCcc---ccCCCccCEEECCCCccCC
Confidence 4566666666666666654432 45556666666666555433 2333455555555555543
No 60
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.89 E-value=2e-05 Score=69.95 Aligned_cols=66 Identities=29% Similarity=0.445 Sum_probs=54.4
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
..+++|+.|+|++|+|+.+..- ....+++|+.|+|++|+|+.+.. ..+..+++|++|+|.+||+..
T Consensus 73 ~~l~~L~~L~l~~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 73 DKLTKLTILYLHENKLQSLPNG--VFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCC
T ss_pred cCCCccCEEECCCCCccccCHH--HhhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCeec
Confidence 3578999999999999988641 12368999999999999997664 345678899999999999976
No 61
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=97.88 E-value=7.5e-06 Score=56.53 Aligned_cols=39 Identities=13% Similarity=0.237 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhCCCH-HHHHHHHHhcCCCHHHHHHHHH
Q psy1142 390 IKQNMVKALSQVSGMNL-NFSEKCLNEVQWDYDQAVTIFN 428 (442)
Q Consensus 390 ~q~~mv~~~~~~Tgmn~-~~s~~cL~~~~Wd~~~A~~~F~ 428 (442)
.+.++|.+|+..||... +-|+..||.++||++.|+..|-
T Consensus 4 d~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 4 DREMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp CHHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred cHHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence 47899999999999995 9999999999999999998773
No 62
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.87 E-value=1.2e-05 Score=76.67 Aligned_cols=63 Identities=30% Similarity=0.404 Sum_probs=35.6
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.+++|+.|+|++|+|+.+..+. .+++|+.|+|++|.|..+.. ..+.++++|++|+|.+|.+..
T Consensus 61 ~l~~L~~L~l~~n~l~~~~~l~----~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~ 123 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHDISALK----ELTNLTYLILTGNQLQSLPN-GVFDKLTNLKELVLVENQLQS 123 (272)
T ss_dssp GCTTCCEEECTTSCCCCCGGGT----TCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCC
T ss_pred cCCCCcEEECCCCCCCCchhhc----CCCCCCEEECCCCccCccCh-hHhcCCcCCCEEECCCCcCCc
Confidence 3566666666666666554322 55666666666666654432 123445566666666666654
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.87 E-value=1.5e-05 Score=81.33 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=58.7
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|+.++.+. .+++|+.|+|++|+|..+.. ..+.++++|++|+|.+|.+..... .
T Consensus 182 ~~l~~L~~L~L~~n~l~~~~~~~----~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~-------~ 249 (440)
T 3zyj_A 182 EGLSNLRYLNLAMCNLREIPNLT----PLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQIQVIER-------N 249 (440)
T ss_dssp TTCSSCCEEECTTSCCSSCCCCT----TCSSCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECT-------T
T ss_pred hcccccCeecCCCCcCccccccC----CCcccCEEECCCCccCccCh-hhhccCccCCEEECCCCceeEECh-------h
Confidence 34688999999999998887653 67889999999998887642 456677788888888888876311 2
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
.+..+++|+.||
T Consensus 250 ~~~~l~~L~~L~ 261 (440)
T 3zyj_A 250 AFDNLQSLVEIN 261 (440)
T ss_dssp SSTTCTTCCEEE
T ss_pred hhcCCCCCCEEE
Confidence 334567776664
No 64
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=97.87 E-value=3.2e-05 Score=72.69 Aligned_cols=64 Identities=27% Similarity=0.348 Sum_probs=31.1
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWT 148 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~ 148 (442)
.+++|+.|+|++|+|+.+..- ....+++|+.|+|++|+|+.+.. ..+.++++|++|+|.+|.+.
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPSG--VFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCS
T ss_pred ccCCCCEEEcCCCcCCCcChh--HhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCC
Confidence 345666666666666655431 11134555555555555554432 12333444445555555444
No 65
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.87 E-value=2.7e-05 Score=78.26 Aligned_cols=102 Identities=20% Similarity=0.176 Sum_probs=66.2
Q ss_pred HHHHHHHhcCCCCccEEeCCCCCCCCCC--CchhhhhccCCCcEEEcCCCCCCCchh--h-hhcCCCCCCCeEEecCCCC
Q psy1142 73 TSVCNIINENLPDLFALNLSENKLYYPE--SLISLAKVIPRVKILYLAHNNIKDLAT--I-RTLESLSNLEELRLEKNPW 147 (442)
Q Consensus 73 ~~~l~i~~~~~~~L~~L~Ls~N~l~~l~--~l~~l~~~~p~L~~L~Ls~N~I~~~~~--L-~~l~~l~~L~eL~L~gNPl 147 (442)
..+.+.+....+.|++|+|++|+|++.. .+.......++|+.|+|++|.|.+... | ..++..+.|++|+|.+|.|
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 3444444445678888888888886532 122222367889999999999876442 1 3345566899999999988
Q ss_pred CCcCCCchhhHHHHHhhCCcccccC--CccCC
Q psy1142 148 TECFNEQDAYTSEVRKIFPKLLKLD--DIQLP 177 (442)
Q Consensus 148 ~~~~~~~~~y~~~i~~~fP~L~~LD--g~~v~ 177 (442)
... ........+...|.|+.|| +..+.
T Consensus 224 ~~~---g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 224 GDT---AALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CHH---HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CHH---HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 752 2234556667788888875 44443
No 66
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.85 E-value=2.9e-05 Score=58.31 Aligned_cols=43 Identities=19% Similarity=0.511 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCc
Q psy1142 393 NMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQLKAKNALPS 438 (442)
Q Consensus 393 ~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~~~iP~ 438 (442)
++|.+|+..||-+.+-|+.||+.++||++.|+..|-+ ...+|.
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~---~~~~~~ 61 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQ---ETNIPN 61 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHT---CSCCCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHc---CCCCCc
Confidence 7999999999999999999999999999999999975 345554
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.83 E-value=1.7e-05 Score=75.48 Aligned_cols=82 Identities=23% Similarity=0.315 Sum_probs=59.4
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|+.+..- ....+++|+.|+|++|+|..+.. ..+.++++|++|+|.+|.+...- . .
T Consensus 106 ~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~----~---~ 175 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKSLPPR--VFDSLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYNNQLKRVP----E---G 175 (270)
T ss_dssp TTCSSCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC----T---T
T ss_pred ccccCCCEEECCCCccCeeCHH--HhCcCcCCCEEECCCCcCCccCH-hHccCCcccceeEecCCcCcEeC----h---h
Confidence 3468899999999999887641 12368899999999999887653 33567788999999999887621 1 2
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
.+..+++|+.||
T Consensus 176 ~~~~l~~L~~L~ 187 (270)
T 2o6q_A 176 AFDKLTELKTLK 187 (270)
T ss_dssp TTTTCTTCCEEE
T ss_pred HhccCCCcCEEE
Confidence 334567777765
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.82 E-value=2.4e-05 Score=80.05 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=58.4
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|+.++.+. .+++|+.|+|++|+|..+.. ..+.++++|++|+|.+|.+..... .
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~----~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~-------~ 260 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKDMPNLT----PLVGLEELEMSGNHFPEIRP-GSFHGLSSLKKLWVMNSQVSLIER-------N 260 (452)
T ss_dssp TTCTTCCEEECTTSCCSSCCCCT----TCTTCCEEECTTSCCSEECG-GGGTTCTTCCEEECTTSCCCEECT-------T
T ss_pred cCCCCCCEEECCCCccccccccc----ccccccEEECcCCcCcccCc-ccccCccCCCEEEeCCCcCceECH-------H
Confidence 34688999999999998887654 67889999999998887642 456677788888888888876211 2
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
.+..+++|+.||
T Consensus 261 ~~~~l~~L~~L~ 272 (452)
T 3zyi_A 261 AFDGLASLVELN 272 (452)
T ss_dssp TTTTCTTCCEEE
T ss_pred HhcCCCCCCEEE
Confidence 235567776664
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.79 E-value=2.2e-05 Score=75.03 Aligned_cols=82 Identities=22% Similarity=0.266 Sum_probs=59.5
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|+.+..- ....+++|+.|+|++|+|+.+.. ..+.++++|++|+|.+|.+..... .
T Consensus 126 ~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-------~ 195 (285)
T 1ozn_A 126 RGLAALQYLYLQDNALQALPDD--TFRDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVHP-------H 195 (285)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECT-------T
T ss_pred hCCcCCCEEECCCCcccccCHh--HhccCCCccEEECCCCcccccCH-HHhcCccccCEEECCCCcccccCH-------h
Confidence 4468899999999999887641 12368899999999999986553 235667789999999998876311 2
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
.+..+++|+.||
T Consensus 196 ~~~~l~~L~~L~ 207 (285)
T 1ozn_A 196 AFRDLGRLMTLY 207 (285)
T ss_dssp TTTTCTTCCEEE
T ss_pred HccCcccccEee
Confidence 334567777765
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=97.79 E-value=1.8e-05 Score=75.33 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=62.4
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHH
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEV 161 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i 161 (442)
.++.|+.|++++|.++.+.++. .+++|+.|+|++|.|..+. .+..+++|++|+|.+|.+.... ...
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~----~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~n~l~~~~-------~~~ 104 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQ----YLPNVRYLALGGNKLHDIS---ALKELTNLTYLILTGNQLQSLP-------NGV 104 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGG----GCTTCCEEECTTSCCCCCG---GGTTCTTCCEEECTTSCCCCCC-------TTT
T ss_pred cccceeeeeeCCCCcccccccc----cCCCCcEEECCCCCCCCch---hhcCCCCCCEEECCCCccCccC-------hhH
Confidence 3678999999999999988754 7899999999999999865 5667779999999999998631 123
Q ss_pred HhhCCcccccC
Q psy1142 162 RKIFPKLLKLD 172 (442)
Q Consensus 162 ~~~fP~L~~LD 172 (442)
+..+++|+.||
T Consensus 105 ~~~l~~L~~L~ 115 (272)
T 3rfs_A 105 FDKLTNLKELV 115 (272)
T ss_dssp TTTCTTCCEEE
T ss_pred hcCCcCCCEEE
Confidence 45678887775
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.79 E-value=3.3e-05 Score=75.08 Aligned_cols=69 Identities=25% Similarity=0.303 Sum_probs=52.9
Q ss_pred cCCCCccEEeCCCCCCCCCCCch-hhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPESLI-SLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~-~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
..+++|+.|+|++|+|+.+..+. .+...+++|+.|+|++|+|........+..+++|++|+|.+|.+..
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 267 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh
Confidence 56789999999999988654332 2334678999999999999886645556667789999999999874
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.78 E-value=2e-05 Score=76.19 Aligned_cols=64 Identities=31% Similarity=0.446 Sum_probs=32.6
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.+++|+.|+|++|+|+.++.. ...+++|+.|+|++|+|+.+.. ..+.++++|++|+|.+|.+..
T Consensus 75 ~l~~L~~L~Ls~N~l~~l~~~---~~~l~~L~~L~l~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQSLPLL---GQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKT 138 (290)
T ss_dssp CCTTCCEEECCSSCCSSCCCC---TTTCTTCCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCCC
T ss_pred CCCcCCEEECCCCcCCcCchh---hccCCCCCEEECCCCcCcccCH-HHHcCCCCCCEEECCCCCCCc
Confidence 345555555555555554321 1245555666666665554431 223444555566666655554
No 73
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.78 E-value=1.2e-05 Score=84.78 Aligned_cols=82 Identities=22% Similarity=0.239 Sum_probs=59.0
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|+.+..- .-..+++|+.|+|++|+|+.+.. ..+.++++|++|+|.+|.+... +. .
T Consensus 73 ~~l~~L~~L~Ls~N~i~~i~~~--~f~~L~~L~~L~Ls~N~l~~l~~-~~f~~L~~L~~L~Ls~N~l~~l----~~---~ 142 (635)
T 4g8a_A 73 FSFPELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQKLVAVETNLASL----EN---F 142 (635)
T ss_dssp TTCTTCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCEECG-GGGTTCTTCCEEECTTSCCCCS----TT---C
T ss_pred hCCCCCCEEECCCCcCCCcChh--HhcCCCCCCEEEccCCcCCCCCH-HHhcCCCCCCEEECCCCcCCCC----Ch---h
Confidence 4578889999999988877531 11267889999999998877652 3467778899999999988762 11 1
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
.+..+++|+.||
T Consensus 143 ~~~~L~~L~~L~ 154 (635)
T 4g8a_A 143 PIGHLKTLKELN 154 (635)
T ss_dssp CCTTCTTCCEEE
T ss_pred hhhcCcccCeec
Confidence 245677887775
No 74
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.77 E-value=2.5e-05 Score=82.98 Aligned_cols=60 Identities=28% Similarity=0.330 Sum_probs=40.4
Q ss_pred CCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 84 PDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
..|+.|+|++|+|+.++.+. .+++|+.|+|++|+|+.+.. .+.++++|+.|+|++|.|..
T Consensus 441 ~~L~~L~Ls~n~l~~lp~~~----~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVLCHLE----QLLLVTHLDLSHNRLRALPP--ALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp TTCSEEECTTSCCSSCCCGG----GGTTCCEEECCSSCCCCCCG--GGGGCTTCCEEECCSSCCCC
T ss_pred cCceEEEecCCCCCCCcCcc----ccccCcEeecCcccccccch--hhhcCCCCCEEECCCCCCCC
Confidence 35777888888887776532 56777777777777775532 44555667777777777665
No 75
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.77 E-value=1.2e-05 Score=80.07 Aligned_cols=64 Identities=27% Similarity=0.404 Sum_probs=28.9
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
+++|+.|+|++|+|+.+..- ....+++|+.|+|++|+|..+. -..+.++++|++|+|.+|.|..
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEF--LFSDLQALEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp CTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCS
T ss_pred CCCCCEEECCCCcCCcCCHH--HhCCCcCCCEEECCCCcccEEC-HHHhCCcccCCEEECCCCcCCe
Confidence 34455555555555444320 0113445555555555554432 1223444455555555555544
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.76 E-value=2.4e-05 Score=75.56 Aligned_cols=82 Identities=28% Similarity=0.301 Sum_probs=62.4
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|+.+..- . ...+++|+.|+|++|+|+.+.. ..+..+++|++|+|.+|.+... + ..
T Consensus 97 ~~l~~L~~L~l~~N~l~~l~~~-~-~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l----~---~~ 166 (290)
T 1p9a_G 97 QTLPALTVLDVSFNRLTSLPLG-A-LRGLGELQELYLKGNELKTLPP-GLLTPTPKLEKLSLANNNLTEL----P---AG 166 (290)
T ss_dssp TTCTTCCEEECCSSCCCCCCSS-T-TTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCSCC----C---TT
T ss_pred ccCCCCCEEECCCCcCcccCHH-H-HcCCCCCCEEECCCCCCCccCh-hhcccccCCCEEECCCCcCCcc----C---HH
Confidence 4578999999999999988631 1 2378899999999999987653 3456778999999999999862 1 13
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
++..+++|+.||
T Consensus 167 ~~~~l~~L~~L~ 178 (290)
T 1p9a_G 167 LLNGLENLDTLL 178 (290)
T ss_dssp TTTTCTTCCEEE
T ss_pred HhcCcCCCCEEE
Confidence 445677777765
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.75 E-value=2.7e-05 Score=74.05 Aligned_cols=65 Identities=29% Similarity=0.464 Sum_probs=36.1
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.+++|+.|+|++|+|+.+.. .....+++|+.|+|++|+|..+.. ..+.++++|++|+|.+|.+..
T Consensus 59 ~l~~L~~L~l~~n~l~~i~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~ 123 (270)
T 2o6q_A 59 RLTKLRLLYLNDNKLQTLPA--GIFKELKNLETLWVTDNKLQALPI-GVFDQLVNLAELRLDRNQLKS 123 (270)
T ss_dssp SCTTCCEEECCSSCCSCCCT--TTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSCCEEECCSSCCCC
T ss_pred CCCCCCEEECCCCccCeeCh--hhhcCCCCCCEEECCCCcCCcCCH-hHcccccCCCEEECCCCccCe
Confidence 35566666666666665542 111245666666666666655442 234445566666666666654
No 78
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.74 E-value=2.3e-05 Score=77.96 Aligned_cols=81 Identities=27% Similarity=0.283 Sum_probs=59.2
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHH
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEV 161 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i 161 (442)
.+++|+.|+|++|+|+.+..- . ...+++|+.|+|++|+|..+.. ..+.++++|++|+|.+|.|..... ..
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~-~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~-------~~ 131 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSE-A-FVPVPNLRYLDLSSNHLHTLDE-FLFSDLQALEVLLLYNNHIVVVDR-------NA 131 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTT-T-TTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECT-------TT
T ss_pred cccccCEEECCCCcCCccChh-h-ccCCCCCCEEECCCCcCCcCCH-HHhCCCcCCCEEECCCCcccEECH-------HH
Confidence 578899999999999887631 1 1268899999999999987652 346677899999999999976311 12
Q ss_pred HhhCCcccccC
Q psy1142 162 RKIFPKLLKLD 172 (442)
Q Consensus 162 ~~~fP~L~~LD 172 (442)
+..+++|+.||
T Consensus 132 ~~~l~~L~~L~ 142 (361)
T 2xot_A 132 FEDMAQLQKLY 142 (361)
T ss_dssp TTTCTTCCEEE
T ss_pred hCCcccCCEEE
Confidence 34566666654
No 79
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=97.74 E-value=5.7e-05 Score=72.08 Aligned_cols=63 Identities=29% Similarity=0.368 Sum_probs=28.1
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWT 148 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~ 148 (442)
+++|+.|+|++|+|+.+.+ .....+++|+.|+|++|+|..+.. ..+.++++|++|+|.+|.+.
T Consensus 104 l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGP--GLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp CTTCCEEECTTSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCC
T ss_pred CcCCCEEECCCCcCCEECH--hHhhCCcCCCEEECCCCcccccCH-hHhccCCCccEEECCCCccc
Confidence 3445555555555544422 001134455555555555543331 12334445555555555544
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.68 E-value=6.7e-05 Score=74.95 Aligned_cols=86 Identities=19% Similarity=0.215 Sum_probs=61.5
Q ss_pred CCccEEeCCCCCCCCC--CCchhhhhccCCCcEEEcCCCCCCCch--h-hh-hcCCCCCCCeEEecCCCCCCcCCCchhh
Q psy1142 84 PDLFALNLSENKLYYP--ESLISLAKVIPRVKILYLAHNNIKDLA--T-IR-TLESLSNLEELRLEKNPWTECFNEQDAY 157 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l--~~l~~l~~~~p~L~~L~Ls~N~I~~~~--~-L~-~l~~l~~L~eL~L~gNPl~~~~~~~~~y 157 (442)
++|+.|+|++|+|+.. ..+......+++|+.|+|++|.|.+.. . +. .+..+++|+.|+|.+|.+... ....
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~---g~~~ 235 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL---GSSA 235 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH---HHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH---HHHH
Confidence 8999999999999742 222222337889999999999998543 1 22 466778999999999998631 1134
Q ss_pred HHHHHhhCCcccccC
Q psy1142 158 TSEVRKIFPKLLKLD 172 (442)
Q Consensus 158 ~~~i~~~fP~L~~LD 172 (442)
....+..+|+|+.||
T Consensus 236 l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 236 LAIALKSWPNLRELG 250 (386)
T ss_dssp HHHHGGGCTTCCEEE
T ss_pred HHHHHccCCCcCEEE
Confidence 455667788888775
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.68 E-value=3.5e-05 Score=74.77 Aligned_cols=85 Identities=13% Similarity=0.086 Sum_probs=62.9
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhh---hhcCCCCCCCeEEecCCCCCCcCCCchhhH
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATI---RTLESLSNLEELRLEKNPWTECFNEQDAYT 158 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L---~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~ 158 (442)
.+++|+.|+|++|+|..+..- . ...+++|+.|+|++|+|.....+ ..+..+++|++|+|.+|.+.. -+...
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~-~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~----l~~~~ 216 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCE-Q-VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET----PTGVC 216 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTT-S-CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC----HHHHH
T ss_pred hccCCCEEEeeCCCcchhhHH-H-hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc----hHHHH
Confidence 588999999999999887531 1 23788999999999998764433 223568899999999999965 22223
Q ss_pred HHHHhhCCcccccC
Q psy1142 159 SEVRKIFPKLLKLD 172 (442)
Q Consensus 159 ~~i~~~fP~L~~LD 172 (442)
..+...+++|+.||
T Consensus 217 ~~l~~~l~~L~~L~ 230 (310)
T 4glp_A 217 AALAAAGVQPHSLD 230 (310)
T ss_dssp HHHHHHTCCCSSEE
T ss_pred HHHHhcCCCCCEEE
Confidence 33567789998886
No 82
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.67 E-value=3e-05 Score=75.60 Aligned_cols=60 Identities=27% Similarity=0.302 Sum_probs=28.4
Q ss_pred CCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCC
Q psy1142 84 PDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWT 148 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~ 148 (442)
++|+.|+|++|+|+.+..- ...+++|+.|+|++|+|+.+.. .+..+++|++|+|.+|++.
T Consensus 191 ~~L~~L~Ls~N~l~~l~~~---~~~l~~L~~L~L~~N~l~~l~~--~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 191 AKLKTLDLSSNKLAFMGPE---FQSAAGVTWISLRNNKLVLIEK--ALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCCEEECCSSCCCEECGG---GGGGTTCSEEECTTSCCCEECT--TCCCCTTCCEEECTTCCCB
T ss_pred ccCCEEECCCCcCCcchhh---hcccCcccEEECcCCcccchhh--HhhcCCCCCEEEccCCCcc
Confidence 4444444444444443211 1134555555555555554332 2344555556666666554
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.65 E-value=5.9e-05 Score=73.30 Aligned_cols=84 Identities=20% Similarity=0.203 Sum_probs=58.1
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCch-hhhhc--CCCCCCCeEEecCCCCCCcCCCchhhHH
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLA-TIRTL--ESLSNLEELRLEKNPWTECFNEQDAYTS 159 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~-~L~~l--~~l~~L~eL~L~gNPl~~~~~~~~~y~~ 159 (442)
.++|+.|+|++|+|+.+..- .+ ..+++|+.|+|++|++.... ....+ .++++|++|+|.+|.+.. .+....
T Consensus 148 ~~~L~~L~L~~N~l~~~~~~-~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~ 221 (312)
T 1wwl_A 148 KPGLKVLSIAQAHSLNFSCE-QV-RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET----PSGVCS 221 (312)
T ss_dssp CTTCCEEEEESCSCCCCCTT-TC-CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC----HHHHHH
T ss_pred cCCCcEEEeeCCCCccchHH-Hh-ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc----hHHHHH
Confidence 47888888888888877531 11 26788888999888875422 22333 667888999999998874 223344
Q ss_pred HHHhhCCcccccC
Q psy1142 160 EVRKIFPKLLKLD 172 (442)
Q Consensus 160 ~i~~~fP~L~~LD 172 (442)
.+...+++|+.||
T Consensus 222 ~~~~~l~~L~~L~ 234 (312)
T 1wwl_A 222 ALAAARVQLQGLD 234 (312)
T ss_dssp HHHHTTCCCSEEE
T ss_pred HHHhcCCCCCEEE
Confidence 5566778888876
No 84
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.63 E-value=8.9e-05 Score=76.13 Aligned_cols=61 Identities=28% Similarity=0.414 Sum_probs=35.8
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.+++|+.|+|++|+++.+.++. .+++|+.|+|++|.|.++.. +..+++|++|+|.+|.+..
T Consensus 88 ~l~~L~~L~l~~n~l~~~~~~~----~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~ 148 (466)
T 1o6v_A 88 NLTKLVDILMNNNQIADITPLA----NLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISD 148 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGGGT----TCTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEECC
T ss_pred ccccCCEEECCCCccccChhhc----CCCCCCEEECCCCCCCCChH---HcCCCCCCEEECCCCccCC
Confidence 3556666666666665554422 55666666666666665543 4455566666666666654
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.63 E-value=0.00011 Score=73.32 Aligned_cols=89 Identities=16% Similarity=0.094 Sum_probs=60.3
Q ss_pred cCCCCccEEeCCCCCCCCCCC--chhhhhcc---------CCCcEEEcCCCCCCCc--hhh-hhcCCCCCCCeEEecCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPES--LISLAKVI---------PRVKILYLAHNNIKDL--ATI-RTLESLSNLEELRLEKNP 146 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~--l~~l~~~~---------p~L~~L~Ls~N~I~~~--~~L-~~l~~l~~L~eL~L~gNP 146 (442)
..+++|+.|+|++|+|+.... +......+ ++|+.|+|++|+|.+. ..+ ..+..+++|++|+|.+|.
T Consensus 119 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 198 (386)
T 2ca6_A 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG 198 (386)
T ss_dssp HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC
T ss_pred HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC
Confidence 458999999999999964321 22111233 9999999999999743 322 345667799999999999
Q ss_pred CCCcCCCchhhHHH-HHhhCCcccccC
Q psy1142 147 WTECFNEQDAYTSE-VRKIFPKLLKLD 172 (442)
Q Consensus 147 l~~~~~~~~~y~~~-i~~~fP~L~~LD 172 (442)
+... ....... .+..+++|+.||
T Consensus 199 l~~~---g~~~l~~~~l~~~~~L~~L~ 222 (386)
T 2ca6_A 199 IRPE---GIEHLLLEGLAYCQELKVLD 222 (386)
T ss_dssp CCHH---HHHHHHHTTGGGCTTCCEEE
T ss_pred CCHh---HHHHHHHHHhhcCCCccEEE
Confidence 8741 0011112 455788888876
No 86
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.62 E-value=1.5e-05 Score=77.73 Aligned_cols=79 Identities=19% Similarity=0.097 Sum_probs=57.7
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHH
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEV 161 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i 161 (442)
.+++|+.|+|++|+|+.+.. ..+...+++|+.|+|++|.|+++... ..+++|++|+|.+|.+... +. .
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~---~~l~~L~~L~Ls~N~l~~l----~~---~- 209 (317)
T 3o53_A 142 CRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIYDVKGQ---VVFAKLKTLDLSSNKLAFM----GP---E- 209 (317)
T ss_dssp GGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCCCEEECC---CCCTTCCEEECCSSCCCEE----CG---G-
T ss_pred ccCCCCEEECCCCCCCcccH-HHHhhccCcCCEEECCCCcCcccccc---cccccCCEEECCCCcCCcc----hh---h-
Confidence 36889999999999987642 23334678999999999999877433 3477899999999998762 11 1
Q ss_pred HhhCCcccccC
Q psy1142 162 RKIFPKLLKLD 172 (442)
Q Consensus 162 ~~~fP~L~~LD 172 (442)
+..+++|+.||
T Consensus 210 ~~~l~~L~~L~ 220 (317)
T 3o53_A 210 FQSAAGVTWIS 220 (317)
T ss_dssp GGGGTTCSEEE
T ss_pred hcccCcccEEE
Confidence 34567777765
No 87
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.62 E-value=2.4e-05 Score=76.91 Aligned_cols=65 Identities=28% Similarity=0.396 Sum_probs=40.8
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
..+++|+.|+|++|+|+.+.+- ....+++|+.|+|++|+|..+.. ..+..+ .|++|+|.+|++.-
T Consensus 53 ~~l~~L~~L~l~~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~-~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 53 RGLGELRNLTIVKSGLRFVAPD--AFHFTPRLSRLNLSFNALESLSW-KTVQGL-SLQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCCSEEECCSSCCCEECTT--GGGSCSCCCEEECCSSCCSCCCS-TTTCSC-CCCEEECCSSCCCC
T ss_pred ccccCCCEEECCCCccceeCHH--HhcCCcCCCEEeCCCCccceeCH-HHcccC-CceEEEeeCCCccC
Confidence 3467777777777777766431 11256777777777777766542 223444 37777777777653
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.61 E-value=0.00011 Score=73.03 Aligned_cols=65 Identities=23% Similarity=0.183 Sum_probs=31.5
Q ss_pred CccEEeCCCCCCCCCCC--chhhhhcc-CCCcEEEcCCCCCCCchh--hh-hcCC-CCCCCeEEecCCCCCC
Q psy1142 85 DLFALNLSENKLYYPES--LISLAKVI-PRVKILYLAHNNIKDLAT--IR-TLES-LSNLEELRLEKNPWTE 149 (442)
Q Consensus 85 ~L~~L~Ls~N~l~~l~~--l~~l~~~~-p~L~~L~Ls~N~I~~~~~--L~-~l~~-l~~L~eL~L~gNPl~~ 149 (442)
+|+.|+|++|+|+.... +......+ ++|+.|||++|.|.+... +. .+.. .++|++|+|.+|++..
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 66666666666655432 11111233 366666666666654211 11 1222 1356666666666654
No 89
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.61 E-value=3.5e-05 Score=78.59 Aligned_cols=66 Identities=27% Similarity=0.311 Sum_probs=43.8
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
..+++|+.|+|++|+|+.+.. .. ...+++|+.|+|++|+|+.+.. ..+.++++|++|+|.+|.+..
T Consensus 85 ~~l~~L~~L~Ls~n~i~~i~~-~~-~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~i~~ 150 (440)
T 3zyj_A 85 KHLRHLEILQLSRNHIRTIEI-GA-FNGLANLNTLELFDNRLTTIPN-GAFVYLSKLKELWLRNNPIES 150 (440)
T ss_dssp SSCSSCCEEECCSSCCCEECG-GG-GTTCSSCCEEECCSSCCSSCCT-TTSCSCSSCCEEECCSCCCCE
T ss_pred hCCCCCCEEECCCCcCCccCh-hh-ccCCccCCEEECCCCcCCeeCH-hHhhccccCceeeCCCCcccc
Confidence 346777788888887776642 11 1257778888888887776542 235566677777777777764
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.60 E-value=3.3e-05 Score=73.42 Aligned_cols=64 Identities=25% Similarity=0.352 Sum_probs=33.3
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
+++|+.|+|++|+|+.+..- . ...+++|+.|+|++|.|..+. ...+.++++|++|+|.+|.+..
T Consensus 51 l~~L~~L~l~~n~l~~~~~~-~-~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~ 114 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDG-A-YQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLAS 114 (276)
T ss_dssp CTTCSEEECTTCCCCEECTT-T-TTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTSCCCC
T ss_pred ccCCcEEECCCCcCCccCHH-H-ccCCcCCCEEECCCCccCccC-hhhhcCCccccEEECCCCCccc
Confidence 45566666666666554320 0 124556666666666655443 1234445555666666665544
No 91
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.59 E-value=5.9e-05 Score=74.36 Aligned_cols=82 Identities=27% Similarity=0.269 Sum_probs=47.0
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHH
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEV 161 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i 161 (442)
.+++|+.|+|++|+|+.+.+- . ...+++|+.|+|++|+|+.+.. ..+.++++|++|+|.+|++... +. ...
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~-~-~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l-~~-----~~~ 144 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEED-S-FSSLGSLEHLDLSYNYLSNLSS-SWFKPLSSLTFLNLLGNPYKTL-GE-----TSL 144 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTT-T-TTTCTTCCEEECCSSCCSSCCH-HHHTTCTTCSEEECTTCCCSSS-CS-----SCS
T ss_pred cCCCCCEEECCCCccCccCHh-h-cCCCCCCCEEECCCCcCCcCCH-hHhCCCccCCEEECCCCCCccc-Cc-----hhh
Confidence 456677777777777665321 1 1256677777777777765442 2245566777777777776642 10 012
Q ss_pred HhhCCcccccC
Q psy1142 162 RKIFPKLLKLD 172 (442)
Q Consensus 162 ~~~fP~L~~LD 172 (442)
+..+++|+.||
T Consensus 145 ~~~l~~L~~L~ 155 (353)
T 2z80_A 145 FSHLTKLQILR 155 (353)
T ss_dssp CTTCTTCCEEE
T ss_pred hccCCCCcEEE
Confidence 34566666664
No 92
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.58 E-value=3.6e-05 Score=78.76 Aligned_cols=66 Identities=27% Similarity=0.297 Sum_probs=46.2
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
..+++|+.|+|++|+|+.+..- . ...+++|+.|+|++|+|+.+.. ..+.++++|++|+|.+|.+..
T Consensus 96 ~~l~~L~~L~Ls~n~i~~~~~~-~-~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 161 (452)
T 3zyi_A 96 RHLHHLEVLQLGRNSIRQIEVG-A-FNGLASLNTLELFDNWLTVIPS-GAFEYLSKLRELWLRNNPIES 161 (452)
T ss_dssp TTCTTCCEEECCSSCCCEECTT-T-TTTCTTCCEEECCSSCCSBCCT-TTSSSCTTCCEEECCSCCCCE
T ss_pred CCCCCCCEEECCCCccCCcChh-h-ccCcccCCEEECCCCcCCccCh-hhhcccCCCCEEECCCCCcce
Confidence 3467788888888888776421 1 1267788888888888875542 335667788888888888765
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.58 E-value=0.0001 Score=71.77 Aligned_cols=62 Identities=27% Similarity=0.236 Sum_probs=26.6
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCC-CCCCchhhhhcCCCCCCCeEEecCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHN-NIKDLATIRTLESLSNLEELRLEKN 145 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N-~I~~~~~L~~l~~l~~L~eL~L~gN 145 (442)
.+++|++|+|++|++++.. ...+. .+++|+.|+|++| .+.+..--..+.++++|++|+|.+|
T Consensus 116 ~~~~L~~L~L~~~~l~~~~-~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPI-VNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp TBCCCSEEECTTCBCCHHH-HHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred hCCCCCEEeCcCcccCHHH-HHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 3455555555555543211 11122 3555555555555 3432111111233445555555555
No 94
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.56 E-value=3.8e-05 Score=74.07 Aligned_cols=81 Identities=22% Similarity=0.285 Sum_probs=57.3
Q ss_pred cCCCCccEEeCCCCCCCC--CCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhH
Q psy1142 81 ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYT 158 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~--l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~ 158 (442)
..+++|+.|+|++|+++. +.. ....+++|+.|+|++|+|.++. ...+.++++|++|+|.+|.+... +.
T Consensus 147 ~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~----~~-- 216 (306)
T 2z66_A 147 NGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSL----DT-- 216 (306)
T ss_dssp TTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCSBC----CS--
T ss_pred ccCcCCCEEECCCCccccccchh---HHhhCcCCCEEECCCCCcCCcC-HHHhcCCCCCCEEECCCCccCcc----Ch--
Confidence 346889999999998875 221 1236789999999999987753 23456677899999999998762 11
Q ss_pred HHHHhhCCcccccC
Q psy1142 159 SEVRKIFPKLLKLD 172 (442)
Q Consensus 159 ~~i~~~fP~L~~LD 172 (442)
..+..+++|+.||
T Consensus 217 -~~~~~l~~L~~L~ 229 (306)
T 2z66_A 217 -FPYKCLNSLQVLD 229 (306)
T ss_dssp -GGGTTCTTCCEEE
T ss_pred -hhccCcccCCEeE
Confidence 1245678887775
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.54 E-value=8.1e-05 Score=72.15 Aligned_cols=82 Identities=17% Similarity=0.154 Sum_probs=59.4
Q ss_pred cCCCCccEEeCCCCCCCCCCC--chhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhH
Q psy1142 81 ENLPDLFALNLSENKLYYPES--LISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYT 158 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~--l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~ 158 (442)
..+++|+.|+|++|+|+.+.+ +..+. .+++|+.|+|++|+|+.+.. .+ .++|++|+|++|.+... +
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-~~~~L~~L~Ls~N~l~~lp~--~~--~~~L~~L~Ls~N~l~~~----~--- 288 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCM-WSSALNSLNLSFAGLEQVPK--GL--PAKLRVLDLSSNRLNRA----P--- 288 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCC-CCTTCCCEECCSSCCCSCCS--CC--CSCCSCEECCSCCCCSC----C---
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhcc-CcCcCCEEECCCCCCCchhh--hh--cCCCCEEECCCCcCCCC----c---
Confidence 457999999999999998732 33221 24899999999999996643 12 36999999999999862 1
Q ss_pred HHHHhhCCcccccC--CccC
Q psy1142 159 SEVRKIFPKLLKLD--DIQL 176 (442)
Q Consensus 159 ~~i~~~fP~L~~LD--g~~v 176 (442)
+...+|+|+.|+ |.++
T Consensus 289 --~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 289 --QPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp --CTTSCCCCSCEECSSTTT
T ss_pred --hhhhCCCccEEECcCCCC
Confidence 135678887764 4444
No 96
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.54 E-value=0.00017 Score=73.17 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=56.9
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCch-hhhhcCCCCCCCeEEecCCCCCCcCCCchhhHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLA-TIRTLESLSNLEELRLEKNPWTECFNEQDAYTS 159 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~-~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~ 159 (442)
..+++|+.|+|++|+|+.+.+- . ...+++|+.|+|++|+|.... .-..+..+++|++|+|.+|.+....+.
T Consensus 76 ~~l~~L~~L~Ls~n~l~~~~~~-~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------ 147 (455)
T 3v47_A 76 RGLSSLIILKLDYNQFLQLETG-A-FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA------ 147 (455)
T ss_dssp TTCTTCCEEECTTCTTCEECTT-T-TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC------
T ss_pred cccccCCEEeCCCCccCccChh-h-ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc------
Confidence 3467888999999988776321 1 226788899999998887621 122366677888999999888763211
Q ss_pred HHHhhCCcccccC
Q psy1142 160 EVRKIFPKLLKLD 172 (442)
Q Consensus 160 ~i~~~fP~L~~LD 172 (442)
.++..+++|+.||
T Consensus 148 ~~~~~l~~L~~L~ 160 (455)
T 3v47_A 148 SFFLNMRRFHVLD 160 (455)
T ss_dssp GGGGGCTTCCEEE
T ss_pred cccCCCCcccEEe
Confidence 2346677787775
No 97
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.54 E-value=0.00014 Score=74.57 Aligned_cols=76 Identities=25% Similarity=0.298 Sum_probs=54.4
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..++.|+.|+|++|+++.+.++. .+++|+.|+|++|+|.+... +..+++|++|+|.+|++... +
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~~~----~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~----~----- 347 (466)
T 1o6v_A 284 AGLTALTNLELNENQLEDISPIS----NLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV----S----- 347 (466)
T ss_dssp TTCTTCSEEECCSSCCSCCGGGG----GCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC----G-----
T ss_pred cCCCccCeEEcCCCcccCchhhc----CCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc----h-----
Confidence 35788888888888888776533 67888888888888877654 44566888888888887752 1
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
-+..+++|+.||
T Consensus 348 ~l~~l~~L~~L~ 359 (466)
T 1o6v_A 348 SLANLTNINWLS 359 (466)
T ss_dssp GGTTCTTCCEEE
T ss_pred hhccCCCCCEEe
Confidence 234566776664
No 98
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.53 E-value=4.4e-05 Score=75.33 Aligned_cols=83 Identities=27% Similarity=0.232 Sum_probs=62.4
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCC-CCCcCCCchhhHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNP-WTECFNEQDAYTS 159 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNP-l~~~~~~~~~y~~ 159 (442)
..+++|+.|+|++|+|+.+.. .....+++|+.|+|++|+|..+.....+.++++|++|+|.+|. +... . .
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-~------~ 167 (353)
T 2z80_A 97 SSLGSLEHLDLSYNYLSNLSS--SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI-Q------R 167 (353)
T ss_dssp TTCTTCCEEECCSSCCSSCCH--HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-C------T
T ss_pred CCCCCCCEEECCCCcCCcCCH--hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc-C------H
Confidence 456899999999999998764 1123789999999999999987654557788899999999995 4431 1 1
Q ss_pred HHHhhCCcccccC
Q psy1142 160 EVRKIFPKLLKLD 172 (442)
Q Consensus 160 ~i~~~fP~L~~LD 172 (442)
..+..+++|+.||
T Consensus 168 ~~~~~l~~L~~L~ 180 (353)
T 2z80_A 168 KDFAGLTFLEELE 180 (353)
T ss_dssp TTTTTCCEEEEEE
T ss_pred HHccCCCCCCEEE
Confidence 2335567777775
No 99
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.53 E-value=0.0001 Score=80.52 Aligned_cols=64 Identities=31% Similarity=0.416 Sum_probs=51.4
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
..+++|+.|+|++|+|+.++. .+ ..+++|+.|+|++|.|..+.+ .+..|++|++|+|.+|++..
T Consensus 267 ~~l~~L~~L~Ls~N~l~~lp~--~~-~~l~~L~~L~L~~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 267 KNLSNLRVLDLSHNRLTSLPA--EL-GSCFQLKYFYFFDNMVTTLPW--EFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp GGGTTCCEEECTTSCCSSCCS--SG-GGGTTCSEEECCSSCCCCCCS--STTSCTTCCCEECTTSCCCS
T ss_pred hCCCCCCEEeCcCCcCCccCh--hh-cCCCCCCEEECCCCCCCccCh--hhhcCCCccEEeCCCCccCC
Confidence 457889999999999987743 12 368899999999999987653 36778899999999999986
No 100
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.52 E-value=5.5e-05 Score=76.89 Aligned_cols=82 Identities=23% Similarity=0.240 Sum_probs=54.1
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|+.+.+- . ...+++|+.|+|++|+|..+. -..+.++++|++|+|.+|.+....+ .
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~-~-~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~-------~ 365 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDN-A-FWGLTHLLKLNLSQNFLGSID-SRMFENLDKLEVLDLSYNHIRALGD-------Q 365 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTT-T-TTTCTTCCEEECCSSCCCEEC-GGGGTTCTTCCEEECCSSCCCEECT-------T
T ss_pred ccCCCCCEEECCCCcccccChh-H-hcCcccCCEEECCCCccCCcC-hhHhcCcccCCEEECCCCcccccCh-------h
Confidence 4467888888888888776421 1 125778888888888886553 2345667788888888888765211 1
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
.+..+++|+.||
T Consensus 366 ~~~~l~~L~~L~ 377 (455)
T 3v47_A 366 SFLGLPNLKELA 377 (455)
T ss_dssp TTTTCTTCCEEE
T ss_pred hccccccccEEE
Confidence 234567776664
No 101
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.51 E-value=0.0003 Score=71.44 Aligned_cols=85 Identities=22% Similarity=0.250 Sum_probs=44.0
Q ss_pred CccEEeCCCCCCCCCC--CchhhhhccCCCcEEEcCCCCCCCch--hhhh--cCCCCCCCeEEecCCCCCCcCCCchhhH
Q psy1142 85 DLFALNLSENKLYYPE--SLISLAKVIPRVKILYLAHNNIKDLA--TIRT--LESLSNLEELRLEKNPWTECFNEQDAYT 158 (442)
Q Consensus 85 ~L~~L~Ls~N~l~~l~--~l~~l~~~~p~L~~L~Ls~N~I~~~~--~L~~--l~~l~~L~eL~L~gNPl~~~~~~~~~y~ 158 (442)
+|++|+|++|+|+... .+......+++|+.|+|++|.|.+.. .+.. ...+++|++|+|.+|.+... .....
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~---~~~~l 162 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA---SCEPL 162 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG---GHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH---HHHHH
Confidence 5777777777665422 11222235666777777777665422 2211 12234566666666666541 12233
Q ss_pred HHHHhhCCcccccC
Q psy1142 159 SEVRKIFPKLLKLD 172 (442)
Q Consensus 159 ~~i~~~fP~L~~LD 172 (442)
...+..+++|+.||
T Consensus 163 ~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 163 ASVLRAKPDFKELT 176 (461)
T ss_dssp HHHHHHCTTCCEEE
T ss_pred HHHHhhCCCCCEEE
Confidence 44555566666664
No 102
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.50 E-value=0.00013 Score=65.81 Aligned_cols=127 Identities=17% Similarity=0.252 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhhcCCcccceEeCCCC-CCCccccccCccccCCchhHHHHHHHHHhcCCCCccEEeCCCCCCCCCCCch
Q psy1142 25 NEIKDKIKLVMAKRYNGDNKALDLSKF-YADPDFVEANMFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLI 103 (442)
Q Consensus 25 ~~~~~~l~~~l~~ry~~~~~~LdLs~l-~~dp~L~~~~i~~~ln~~~~~~~~l~i~~~~~~~L~~L~Ls~N~l~~l~~l~ 103 (442)
.+..+.|..++.. ++..+.|+|++. ..+. . .+..+.+.+ ...+.|++|+|++|+|.+- +..
T Consensus 22 ~~~~~~l~~~l~~--~~~L~~L~L~~n~~i~~----~----------g~~~l~~~L-~~~~~L~~L~Ls~n~i~~~-g~~ 83 (185)
T 1io0_A 22 TDVEETLKRIQNN--DPDLEEVNLNNIMNIPV----P----------TLKACAEAL-KTNTYVKKFSIVGTRSNDP-VAF 83 (185)
T ss_dssp CCHHHHHHHHHTT--CTTCCEEECTTCTTCCH----H----------HHHHHHHHH-TTCCSCCEEECTTSCCCHH-HHH
T ss_pred cHHHHHHHHHHhc--CCCCCEEEecCCCCCCH----H----------HHHHHHHHH-HhCCCcCEEECcCCCCChH-HHH
Confidence 3456667777654 667888998864 3321 1 123333333 3468899999999999763 222
Q ss_pred hh---hhccCCCcEEEcCCCCCCCchh---hhhcCCCCCCCeEEe--cCCCCCCcCCCchhhHHHHHhhCCcccccC
Q psy1142 104 SL---AKVIPRVKILYLAHNNIKDLAT---IRTLESLSNLEELRL--EKNPWTECFNEQDAYTSEVRKIFPKLLKLD 172 (442)
Q Consensus 104 ~l---~~~~p~L~~L~Ls~N~I~~~~~---L~~l~~l~~L~eL~L--~gNPl~~~~~~~~~y~~~i~~~fP~L~~LD 172 (442)
.+ ....+.|+.|+|++|.|.+... .+.++..+.|++|+| .+|.|... ........++..+.|+.||
T Consensus 84 ~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~---g~~~l~~~L~~n~~L~~L~ 157 (185)
T 1io0_A 84 ALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN---VEMEIANMLEKNTTLLKFG 157 (185)
T ss_dssp HHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH---HHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH---HHHHHHHHHHhCCCcCEEe
Confidence 23 2356899999999999987542 134566679999999 89999762 2244556677778888776
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.50 E-value=0.00021 Score=70.89 Aligned_cols=91 Identities=21% Similarity=0.294 Sum_probs=46.2
Q ss_pred HhcCCCCccEEeCCCCCCCCCCC--chhhhhcc-CCCcEEEcCCCCCCCchh--hh-hcCCC-CCCCeEEecCCCCCCcC
Q psy1142 79 INENLPDLFALNLSENKLYYPES--LISLAKVI-PRVKILYLAHNNIKDLAT--IR-TLESL-SNLEELRLEKNPWTECF 151 (442)
Q Consensus 79 ~~~~~~~L~~L~Ls~N~l~~l~~--l~~l~~~~-p~L~~L~Ls~N~I~~~~~--L~-~l~~l-~~L~eL~L~gNPl~~~~ 151 (442)
.....+.|+.|+|++|+|+.... +......+ ++|+.|+|++|+|.+... +. .+..+ +.|++|+|.+|.+...
T Consensus 75 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~- 153 (362)
T 3goz_A 75 LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK- 153 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS-
T ss_pred HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH-
Confidence 33334667777777777665432 11111123 567777777777654432 11 13332 3667777777766541
Q ss_pred CCchhhHHHHHhhCC-cccccC
Q psy1142 152 NEQDAYTSEVRKIFP-KLLKLD 172 (442)
Q Consensus 152 ~~~~~y~~~i~~~fP-~L~~LD 172 (442)
........+..++ +|+.||
T Consensus 154 --~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 154 --SSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp --CHHHHHHHHHTSCTTCCEEE
T ss_pred --HHHHHHHHHhcCCccccEee
Confidence 1223333344444 666654
No 104
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.49 E-value=0.0001 Score=75.91 Aligned_cols=73 Identities=25% Similarity=0.267 Sum_probs=58.7
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|+.++ +. .+++|+.|+|++|+|+.+. +.++++|++|+|.+|.+... +
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~~-~~----~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~~N~l~~l----~----- 122 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTLD-LS----QNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNKLTKL----D----- 122 (457)
T ss_dssp GGCTTCSEEECCSSCCSCCC-CT----TCTTCSEEECCSSCCSCCC----CTTCTTCCEEECCSSCCSCC----C-----
T ss_pred cccCCCCEEEccCCcCCeEc-cc----cCCCCCEEECcCCCCceee----cCCCCcCCEEECCCCcCCee----c-----
Confidence 45789999999999998874 33 7889999999999998863 66788999999999998762 1
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
+..+++|+.|+
T Consensus 123 -~~~l~~L~~L~ 133 (457)
T 3bz5_A 123 -VSQNPLLTYLN 133 (457)
T ss_dssp -CTTCTTCCEEE
T ss_pred -CCCCCcCCEEE
Confidence 45677777764
No 105
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.49 E-value=1.1e-05 Score=73.21 Aligned_cols=61 Identities=30% Similarity=0.312 Sum_probs=34.1
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
+++|+.|+|++|+|+.++.+. .+++|+.|+|++|+|.++..+- ..+++|++|+|.+|.+..
T Consensus 47 l~~L~~L~ls~n~l~~l~~~~----~l~~L~~L~l~~n~l~~l~~~~--~~~~~L~~L~L~~N~l~~ 107 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKISSLS----GMENLRILSLGRNLIKKIENLD--AVADTLEELWISYNQIAS 107 (198)
T ss_dssp TTTCSEEECSEEEESCCCCHH----HHTTCCEEEEEEEEECSCSSHH--HHHHHCSEEEEEEEECCC
T ss_pred CCCCCEEECCCCCCccccccc----cCCCCCEEECCCCCcccccchh--hcCCcCCEEECcCCcCCc
Confidence 566667777766666655322 4566666666666666544321 123455566666665543
No 106
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.48 E-value=2.5e-05 Score=75.36 Aligned_cols=64 Identities=23% Similarity=0.189 Sum_probs=39.3
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
+++|+.|+|++|+|..+... ...+++|+.|+|++|+|..+.....+..+++|++|+|.+|.+..
T Consensus 77 ~~~L~~L~Ls~n~i~~l~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 140 (306)
T 2z66_A 77 TTSLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140 (306)
T ss_dssp CSCCCEEECCSCSEEEEEEE---EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred ccccCEEECCCCccccChhh---cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc
Confidence 56666666666666554321 12466677777777776666555555666677777777776654
No 107
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.46 E-value=0.00011 Score=73.51 Aligned_cols=63 Identities=17% Similarity=0.296 Sum_probs=25.3
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWT 148 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~ 148 (442)
+++|+.|+|++|+|+.+.+- ....+++|+.|+|++|+|..+.. ..+.++++|++|+|.+|.+.
T Consensus 92 l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~ 154 (390)
T 3o6n_A 92 AHTIQKLYMGFNAIRYLPPH--VFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLE 154 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCC
T ss_pred CCCcCEEECCCCCCCcCCHH--HhcCCCCCCEEECCCCccCcCCH-HHhcCCCCCcEEECCCCccC
Confidence 34444444444444443210 01134444444444444443321 11233344444444444443
No 108
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.45 E-value=0.00044 Score=70.14 Aligned_cols=88 Identities=19% Similarity=0.132 Sum_probs=40.0
Q ss_pred CCCCccEEeCCCCCCCCCC--CchhhhhccCCCcEEEcCCCCCCCch--hh-hhc-CCCCCCCeEEecCCCCCCcCCCch
Q psy1142 82 NLPDLFALNLSENKLYYPE--SLISLAKVIPRVKILYLAHNNIKDLA--TI-RTL-ESLSNLEELRLEKNPWTECFNEQD 155 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~--~l~~l~~~~p~L~~L~Ls~N~I~~~~--~L-~~l-~~l~~L~eL~L~gNPl~~~~~~~~ 155 (442)
..++|+.|+|++|+|+... .+......+++|+.|+|++|.|.+.. .+ ..+ ..+++|++|+|.+|.+... ..
T Consensus 197 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~---~~ 273 (461)
T 1z7x_W 197 SPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK---GC 273 (461)
T ss_dssp SCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH---HH
T ss_pred CCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHH---HH
Confidence 3445556666666555421 11111224556666666666554422 11 111 1345666666666655431 11
Q ss_pred hhHHHHHhhCCcccccC
Q psy1142 156 AYTSEVRKIFPKLLKLD 172 (442)
Q Consensus 156 ~y~~~i~~~fP~L~~LD 172 (442)
.+....+..+++|+.||
T Consensus 274 ~~l~~~l~~~~~L~~L~ 290 (461)
T 1z7x_W 274 GDLCRVLRAKESLKELS 290 (461)
T ss_dssp HHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHhhCCCcceEE
Confidence 12333444455555554
No 109
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.45 E-value=9.3e-05 Score=76.71 Aligned_cols=67 Identities=19% Similarity=0.297 Sum_probs=51.3
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhh-hcCCCCCCCeEEecCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIR-TLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~-~l~~l~~L~eL~L~gNPl~~ 149 (442)
..++.|+.|+|++|+|+...+ ..+ ..+++|+.|+|++|+|.++..+. .+.++++|++|+|++|.+..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~-~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVF-ENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTT-TTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred hhCCcccEEEeECCccChhhh-hhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 467889999999999987322 112 37889999999999998876553 36677888999999998876
No 110
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.44 E-value=0.00012 Score=71.73 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=62.1
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
...+.|+.|+|++|+|+.++.- +. .+++|+.|+|++|.|..+. ..+.++++|++|+|.+|.+.. .+ .
T Consensus 78 ~~~~~l~~L~L~~n~l~~lp~~--l~-~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~Ls~n~l~~-lp-------~ 144 (328)
T 4fcg_A 78 ATQPGRVALELRSVPLPQFPDQ--AF-RLSHLQHMTIDAAGLMELP--DTMQQFAGLETLTLARNPLRA-LP-------A 144 (328)
T ss_dssp HTSTTCCEEEEESSCCSSCCSC--GG-GGTTCSEEEEESSCCCCCC--SCGGGGTTCSEEEEESCCCCC-CC-------G
T ss_pred ccccceeEEEccCCCchhcChh--hh-hCCCCCEEECCCCCccchh--HHHhccCCCCEEECCCCcccc-Cc-------H
Confidence 4468999999999999988641 22 5899999999999998654 235567799999999999984 22 1
Q ss_pred HHhhCCcccccCC
Q psy1142 161 VRKIFPKLLKLDD 173 (442)
Q Consensus 161 i~~~fP~L~~LDg 173 (442)
.+..+++|+.||=
T Consensus 145 ~l~~l~~L~~L~L 157 (328)
T 4fcg_A 145 SIASLNRLRELSI 157 (328)
T ss_dssp GGGGCTTCCEEEE
T ss_pred HHhcCcCCCEEEC
Confidence 2567888888863
No 111
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.42 E-value=9.8e-05 Score=73.73 Aligned_cols=82 Identities=21% Similarity=0.296 Sum_probs=62.9
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|+.+..- . ...+++|+.|+|++|.|..+.. ..+.++++|++|+|.+|.+... +. .
T Consensus 66 ~~l~~L~~L~L~~n~i~~~~~~-~-~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l----~~---~ 135 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQIEEIDTY-A-FAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTVLVLERNDLSSL----PR---G 135 (390)
T ss_dssp HHCCCCSEEECTTSCCCEECTT-T-TTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC----CT---T
T ss_pred cccccCcEEECCCCcccccChh-h-ccCCCCcCEEECCCCCCCcCCH-HHhcCCCCCCEEECCCCccCcC----CH---H
Confidence 3488999999999999887531 1 2378999999999999987642 3466788999999999999862 11 2
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
++..+++|+.||
T Consensus 136 ~~~~l~~L~~L~ 147 (390)
T 3o6n_A 136 IFHNTPKLTTLS 147 (390)
T ss_dssp TTTTCTTCCEEE
T ss_pred HhcCCCCCcEEE
Confidence 446678888776
No 112
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.42 E-value=0.00017 Score=70.83 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=52.9
Q ss_pred CCCCccEEeCCC-CCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 82 NLPDLFALNLSE-NKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 82 ~~~~L~~L~Ls~-N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.+.+|+.|+|++ |+|+.+..- . ...+++|+.|+|++|+|+.+.. ..+.+|++|++|+|++|.|..
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~-~-~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~ 94 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELR-D-LRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSFNALES 94 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGG-G-SCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCSSCCSC
T ss_pred CCCCeeEEEccCCCCCCCcChh-H-hccccCCCEEECCCCccceeCH-HHhcCCcCCCEEeCCCCccce
Confidence 456899999996 999988641 1 2378999999999999987653 345678899999999999986
No 113
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.40 E-value=9.9e-05 Score=76.52 Aligned_cols=61 Identities=26% Similarity=0.241 Sum_probs=27.8
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWT 148 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~ 148 (442)
+++|+.|+|++|+|+.++.. .+++|+.|+|++|+|..+..-..+.++++|++|+|.+|.+.
T Consensus 68 l~~L~~L~Ls~N~l~~lp~~-----~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 68 NQELEYLDLSHNKLVKISCH-----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp CTTCCEEECCSSCCCEEECC-----CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred ccCCCEEecCCCceeecCcc-----ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc
Confidence 44455555555554443321 34455555555555544321123333445555555555554
No 114
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=97.40 E-value=4.8e-05 Score=74.76 Aligned_cols=82 Identities=23% Similarity=0.331 Sum_probs=53.9
Q ss_pred cCCCCccEEeCCCCCCCC-CCC-chh-----hhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCC
Q psy1142 81 ENLPDLFALNLSENKLYY-PES-LIS-----LAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNE 153 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~-l~~-l~~-----l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~ 153 (442)
..+++|+.|+|++|++.. ++. +.. ....+++|+.|+|++|+|+.+.+ .+..+++|++|+|.+|.+...
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~N~l~~l--- 221 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA--SIANLQNLKSLKIRNSPLSAL--- 221 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG--GGGGCTTCCEEEEESSCCCCC---
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH--hhcCCCCCCEEEccCCCCCcC---
Confidence 457888999998865543 322 110 01137888888888888886542 356677888888888888752
Q ss_pred chhhHHHHHhhCCcccccC
Q psy1142 154 QDAYTSEVRKIFPKLLKLD 172 (442)
Q Consensus 154 ~~~y~~~i~~~fP~L~~LD 172 (442)
+. .+..+++|+.||
T Consensus 222 -~~----~l~~l~~L~~L~ 235 (328)
T 4fcg_A 222 -GP----AIHHLPKLEELD 235 (328)
T ss_dssp -CG----GGGGCTTCCEEE
T ss_pred -ch----hhccCCCCCEEE
Confidence 11 245677887775
No 115
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.40 E-value=0.0001 Score=74.07 Aligned_cols=92 Identities=25% Similarity=0.228 Sum_probs=50.7
Q ss_pred HHHhcCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCch--hhh-hc-CCCCCCCeEEecCCCCCCcCC
Q psy1142 77 NIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLA--TIR-TL-ESLSNLEELRLEKNPWTECFN 152 (442)
Q Consensus 77 ~i~~~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~--~L~-~l-~~l~~L~eL~L~gNPl~~~~~ 152 (442)
..+....+.|+.|+|++|.|+. .++..+...+++|+.|+|++|.|.+.. .+. .+ ...+.|++|+|.+|.|...
T Consensus 94 ~~L~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~-- 170 (372)
T 3un9_A 94 AVLGSGRHALDEVNLASCQLDP-AGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAA-- 170 (372)
T ss_dssp HHHSSCSSCEEEEECTTCCCCH-HHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHH--
T ss_pred HHHhhCCCCceEEEecCCCCCH-HHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChH--
Confidence 3333344567777777777654 223444455667777777777775443 111 11 2345677777777776541
Q ss_pred CchhhHHHHHhhCCcccccC
Q psy1142 153 EQDAYTSEVRKIFPKLLKLD 172 (442)
Q Consensus 153 ~~~~y~~~i~~~fP~L~~LD 172 (442)
...+....+...++|+.||
T Consensus 171 -~~~~l~~~L~~~~~L~~L~ 189 (372)
T 3un9_A 171 -GVAVLMEGLAGNTSVTHLS 189 (372)
T ss_dssp -HHHHHHHHHHTCSSCCEEE
T ss_pred -HHHHHHHHHhcCCCcCEEe
Confidence 1233444445566666664
No 116
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.39 E-value=0.00013 Score=76.80 Aligned_cols=67 Identities=19% Similarity=0.286 Sum_probs=49.2
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhh-hcCCCCCCCeEEecCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIR-TLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~-~l~~l~~L~eL~L~gNPl~~ 149 (442)
..++.|+.|+|++|+|+...+ .. ...+++|+.|+|++|+|+.+..+. .+.++++|++|+|.+|.+..
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~-~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVF-QG-CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTT-TT-CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred cCCCCceEEECCCCccccchh-hh-hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 457888888888888887422 11 136788888888888888776543 35677788888888888875
No 117
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.39 E-value=0.0012 Score=64.00 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=26.4
Q ss_pred CCCccEEeCCCCC-CCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCC
Q psy1142 83 LPDLFALNLSENK-LYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145 (442)
Q Consensus 83 ~~~L~~L~Ls~N~-l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gN 145 (442)
+++|+.|+|++|. +++ ..+..+. .+++|+.|+|++|.--....+..+..+++|++|+|.||
T Consensus 221 ~~~L~~L~l~~~~~l~~-~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKN-DCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCSEEECTTCTTCCG-GGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCEEeCCCCCcCCH-HHHHHHh-CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 4455555555554 322 1112221 34555555555553222222333444555555555555
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.38 E-value=0.00021 Score=73.58 Aligned_cols=73 Identities=23% Similarity=0.241 Sum_probs=60.2
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|+.++ +. .+++|+.|+|++|+|..+. +..+++|++|+|.+|.+... +
T Consensus 82 ~~l~~L~~L~Ls~N~l~~~~-~~----~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~l----~----- 143 (457)
T 3bz5_A 82 SQNTNLTYLACDSNKLTNLD-VT----PLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTEI----D----- 143 (457)
T ss_dssp TTCTTCSEEECCSSCCSCCC-CT----TCTTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSCCSCC----C-----
T ss_pred ccCCCCCEEECcCCCCceee-cC----CCCcCCEEECCCCcCCeec----CCCCCcCCEEECCCCcccee----c-----
Confidence 45789999999999999874 33 7899999999999999863 67788999999999999872 1
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
+..+++|+.|+
T Consensus 144 -l~~l~~L~~L~ 154 (457)
T 3bz5_A 144 -VSHNTQLTELD 154 (457)
T ss_dssp -CTTCTTCCEEE
T ss_pred -cccCCcCCEEE
Confidence 34577777765
No 119
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.38 E-value=9.9e-05 Score=75.70 Aligned_cols=81 Identities=22% Similarity=0.177 Sum_probs=50.5
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHH
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEV 161 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i 161 (442)
.+++|+.|+|++|+|+.+..- .-..+++|+.|+|++|+|..+.. ..+.++++|++|.|.+|.+..... ..
T Consensus 78 ~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-------~~ 147 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLKLIPLG--VFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISH-------RA 147 (477)
T ss_dssp TCTTCCEEECCSSCCCSCCTT--SSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEEECCTTCCEECT-------TS
T ss_pred CCccCCEEECCCCcCCccCcc--cccCCCCCCEEECCCCccccCCh-hHccccccCCEEECCCCccceeCh-------hh
Confidence 456777777777777766531 11256777788888777765532 235566778888888887765211 12
Q ss_pred HhhCCcccccC
Q psy1142 162 RKIFPKLLKLD 172 (442)
Q Consensus 162 ~~~fP~L~~LD 172 (442)
+..+++|+.|+
T Consensus 148 ~~~l~~L~~L~ 158 (477)
T 2id5_A 148 FSGLNSLEQLT 158 (477)
T ss_dssp STTCTTCCEEE
T ss_pred ccCCCCCCEEE
Confidence 34566776664
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.36 E-value=6.9e-05 Score=81.89 Aligned_cols=63 Identities=27% Similarity=0.330 Sum_probs=36.8
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.++.|+.|+|++|+|..+..- +. .+++|+.|+|++|.|+.+. ..+.+|++|+.|+|++|.|..
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~--~~-~l~~L~~L~Ls~N~l~~lp--~~~~~l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISAN--IF-KYDFLTRLYLNGNSLTELP--AEIKNLSNLRVLDLSHNRLTS 284 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGG--GG-GCCSCSCCBCTTSCCSCCC--GGGGGGTTCCEEECTTSCCSS
T ss_pred cCCCCcEEECCCCCCCCCChh--hc-CCCCCCEEEeeCCcCcccC--hhhhCCCCCCEEeCcCCcCCc
Confidence 356666777777776665421 11 5666666666666666443 224445566666666666653
No 121
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.36 E-value=0.00015 Score=70.59 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=20.4
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKD 124 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~ 124 (442)
..+++|+.|+|++|++............+++|+.|+|++|.|..
T Consensus 142 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred cCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 34566666666666664321111111234455555555554443
No 122
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.34 E-value=5.6e-05 Score=78.56 Aligned_cols=79 Identities=19% Similarity=0.098 Sum_probs=57.6
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHH
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEV 161 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i 161 (442)
.++.|+.|+|++|+|+.+.+ ..+...+++|+.|+|++|.|..+.. +..+++|+.|+|++|.+... +. .
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~-~~l~~~l~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~Ls~N~l~~~----~~---~- 209 (487)
T 3oja_A 142 CRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIYDVKG---QVVFAKLKTLDLSSNKLAFM----GP---E- 209 (487)
T ss_dssp GGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCCCEEEC---CCCCTTCCEEECCSSCCCEE----CG---G-
T ss_pred CCCCCCEEECCCCCCCCcCh-HHHhhhCCcccEEecCCCccccccc---cccCCCCCEEECCCCCCCCC----CH---h-
Confidence 46889999999999987642 2344467899999999999887643 34577899999999998762 11 1
Q ss_pred HhhCCcccccC
Q psy1142 162 RKIFPKLLKLD 172 (442)
Q Consensus 162 ~~~fP~L~~LD 172 (442)
+..+++|+.||
T Consensus 210 ~~~l~~L~~L~ 220 (487)
T 3oja_A 210 FQSAAGVTWIS 220 (487)
T ss_dssp GGGGTTCSEEE
T ss_pred HcCCCCccEEE
Confidence 34567777765
No 123
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.33 E-value=0.00026 Score=67.11 Aligned_cols=83 Identities=20% Similarity=0.204 Sum_probs=55.5
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|+.+..- . ...+++|+.|+|++|.|..+... .+.++++|++|+|.+|.+...- ...
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~-~-~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~------l~~ 143 (276)
T 2z62_A 73 QSLSHLSTLILTGNPIQSLALG-A-FSGLSSLQKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFK------LPE 143 (276)
T ss_dssp TTCTTCCEEECTTCCCCEECTT-T-TTTCTTCCEEECTTSCCCCSTTC-CCTTCTTCCEEECCSSCCCCCC------CCG
T ss_pred cCCcCCCEEECCCCccCccChh-h-hcCCccccEEECCCCCccccCch-hcccCCCCCEEECcCCccceec------Cch
Confidence 3467888888888888776421 1 12678888888888888776542 2566778888888888876510 012
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
.+..+++|+.||
T Consensus 144 ~~~~l~~L~~L~ 155 (276)
T 2z62_A 144 YFSNLTNLEHLD 155 (276)
T ss_dssp GGGGCTTCCEEE
T ss_pred hhccCCCCCEEE
Confidence 345567777765
No 124
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.32 E-value=0.00022 Score=73.14 Aligned_cols=82 Identities=27% Similarity=0.351 Sum_probs=58.9
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|..+.+- ....+++|+.|+|++|.|..+.. ..+.++++|++|+|.+|.+... ...
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-------~~~ 170 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDY--MFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSI-------PTE 170 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSC-------CHH
T ss_pred cCCCCCCEEECCCCccccCChh--HccccccCCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCccc-------Chh
Confidence 3468899999999999876431 12378899999999999876652 3466777889999999888762 123
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
.+..+++|+.|+
T Consensus 171 ~l~~l~~L~~L~ 182 (477)
T 2id5_A 171 ALSHLHGLIVLR 182 (477)
T ss_dssp HHTTCTTCCEEE
T ss_pred HhcccCCCcEEe
Confidence 455666666654
No 125
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.31 E-value=0.00015 Score=76.25 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=38.4
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
..+++|+.|+|++|+|+.+.+- . ...+++|+.|+|++|+|+++... .+++|++|+|.+|.+..
T Consensus 73 ~~l~~L~~L~Ls~N~l~~~~~~-~-~~~l~~L~~L~Ls~N~l~~lp~~----~l~~L~~L~Ls~N~l~~ 135 (562)
T 3a79_B 73 SFLSELRVLRLSHNRIRSLDFH-V-FLFNQDLEYLDVSHNRLQNISCC----PMASLRHLDLSFNDFDV 135 (562)
T ss_dssp TTCTTCCEEECCSCCCCEECTT-T-TTTCTTCCEEECTTSCCCEECSC----CCTTCSEEECCSSCCSB
T ss_pred ccCCCccEEECCCCCCCcCCHH-H-hCCCCCCCEEECCCCcCCccCcc----ccccCCEEECCCCCccc
Confidence 3466777777777777765321 1 12566777777777777654432 45566666666666654
No 126
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.30 E-value=0.00016 Score=75.37 Aligned_cols=72 Identities=22% Similarity=0.354 Sum_probs=49.2
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHH
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEV 161 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i 161 (442)
.+++|+.|+|++|+|+.+.+. ..++|+.|+|++|+|+++. .++++|++|+|.+|.+.. .+. .
T Consensus 408 ~~~~L~~L~Ls~N~l~~l~~~-----~~~~L~~L~Ls~N~l~~~~-----~~l~~L~~L~Ls~N~l~~-ip~---~---- 469 (549)
T 2z81_A 408 WPEKMRFLNLSSTGIRVVKTC-----IPQTLEVLDVSNNNLDSFS-----LFLPRLQELYISRNKLKT-LPD---A---- 469 (549)
T ss_dssp CCTTCCEEECTTSCCSCCCTT-----SCTTCSEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSS-CCC---G----
T ss_pred ccccccEEECCCCCcccccch-----hcCCceEEECCCCChhhhc-----ccCChhcEEECCCCccCc-CCC---c----
Confidence 346899999999999877642 2357888888888877642 356678888888887764 221 1
Q ss_pred HhhCCcccccC
Q psy1142 162 RKIFPKLLKLD 172 (442)
Q Consensus 162 ~~~fP~L~~LD 172 (442)
..+++|+.||
T Consensus 470 -~~l~~L~~L~ 479 (549)
T 2z81_A 470 -SLFPVLLVMK 479 (549)
T ss_dssp -GGCTTCCEEE
T ss_pred -ccCccCCEEe
Confidence 2467776664
No 127
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.29 E-value=0.00027 Score=68.80 Aligned_cols=78 Identities=26% Similarity=0.372 Sum_probs=42.8
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHH
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEV 161 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i 161 (442)
.+++|+.|+|++|+|+.+.+- .+ ..+++|+.|+|++|+|+.+..- -+++|++|+|.+|.+... ....
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~-~~-~~l~~L~~L~Ls~n~l~~l~~~----~~~~L~~L~l~~n~l~~~-------~~~~ 140 (330)
T 1xku_A 74 NLKNLHTLILINNKISKISPG-AF-APLVKLERLYLSKNQLKELPEK----MPKTLQELRVHENEITKV-------RKSV 140 (330)
T ss_dssp TCTTCCEEECCSSCCCCBCTT-TT-TTCTTCCEEECCSSCCSBCCSS----CCTTCCEEECCSSCCCBB-------CHHH
T ss_pred cCCCCCEEECCCCcCCeeCHH-Hh-cCCCCCCEEECCCCcCCccChh----hcccccEEECCCCccccc-------CHhH
Confidence 456677777777777665321 11 2566777777777776644321 124566666666666541 1233
Q ss_pred HhhCCcccccC
Q psy1142 162 RKIFPKLLKLD 172 (442)
Q Consensus 162 ~~~fP~L~~LD 172 (442)
+..+++|+.||
T Consensus 141 ~~~l~~L~~L~ 151 (330)
T 1xku_A 141 FNGLNQMIVVE 151 (330)
T ss_dssp HTTCTTCCEEE
T ss_pred hcCCccccEEE
Confidence 45566665554
No 128
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.29 E-value=0.00037 Score=77.16 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=20.1
Q ss_pred ccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 108 VIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 108 ~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.+++|+.|+|++|.|.+...-..+.++++|++|+|.+|.+..
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 344555555555555443221233444455555555555544
No 129
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.28 E-value=0.00023 Score=75.64 Aligned_cols=64 Identities=25% Similarity=0.399 Sum_probs=28.2
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
+++|+.|+|++|+|+.+.. .+...+++|+.|+|++|.|..+.. ..+.++++|++|+|.+|.+..
T Consensus 122 l~~L~~L~L~~n~l~~l~~--~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp CTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSB
T ss_pred CCCCCEEEeeCCCCCCCCH--HHhccCCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCC
Confidence 3445555555555544432 001134455555555555443321 123344455555555555543
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.27 E-value=0.00029 Score=74.83 Aligned_cols=56 Identities=23% Similarity=0.189 Sum_probs=30.1
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWT 148 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~ 148 (442)
.+++|+.|+|++|+|+.++.+. .+|+.|+|++|+|+.+.. .+++|+.|+|.+|.|.
T Consensus 98 ~l~~L~~L~Ls~N~l~~ip~l~------~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 98 LPASLEYLDACDNRLSTLPELP------ASLKHLDVDNNQLTMLPE-----LPALLEYINADNNQLT 153 (571)
T ss_dssp CCTTCCEEECCSSCCSCCCCCC------TTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCS
T ss_pred ccCCCCEEEccCCCCCCcchhh------cCCCEEECCCCcCCCCCC-----cCccccEEeCCCCccC
Confidence 3567777777777777665421 155555555555554332 2334444444444443
No 131
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.26 E-value=0.00027 Score=69.01 Aligned_cols=65 Identities=25% Similarity=0.343 Sum_probs=51.5
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
..+++|+.|+|++|+|+.+..- . ...+++|+.|+|++|+|..+.. .+..+++|++|+|.+|++..
T Consensus 214 ~~l~~L~~L~L~~N~l~~~~~~-~-~~~l~~L~~L~L~~N~l~~lp~--~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIRMIENG-S-LSFLPTLRELHLDNNKLSRVPA--GLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp TTCTTCSCCBCCSSCCCCCCTT-G-GGGCTTCCEEECCSSCCCBCCT--TGGGCTTCCEEECCSSCCCB
T ss_pred cCCCCCCEEECCCCcCCcCChh-H-hhCCCCCCEEECCCCcCeecCh--hhhcCccCCEEECCCCCCCc
Confidence 3467899999999999887641 1 2378899999999999986653 25667799999999999976
No 132
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.26 E-value=0.00032 Score=72.96 Aligned_cols=73 Identities=22% Similarity=0.314 Sum_probs=46.8
Q ss_pred CCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHHHh
Q psy1142 84 PDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRK 163 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i~~ 163 (442)
+.|+.|+|++|+|+.+. ..+++|+.|+|++|+|+.+.+. ..++.|+.|+|++|.+....+ ..+.
T Consensus 431 ~~L~~L~Ls~N~l~~~~------~~l~~L~~L~Ls~N~l~~ip~~---~~l~~L~~L~Ls~N~l~~~~~-------~~~~ 494 (549)
T 2z81_A 431 QTLEVLDVSNNNLDSFS------LFLPRLQELYISRNKLKTLPDA---SLFPVLLVMKISRNQLKSVPD-------GIFD 494 (549)
T ss_dssp TTCSEEECCSSCCSCCC------CCCTTCCEEECCSSCCSSCCCG---GGCTTCCEEECCSSCCCCCCT-------TGGG
T ss_pred CCceEEECCCCChhhhc------ccCChhcEEECCCCccCcCCCc---ccCccCCEEecCCCccCCcCH-------HHHh
Confidence 46778888888777653 2567777777777777755543 345677777777777765211 2234
Q ss_pred hCCcccccC
Q psy1142 164 IFPKLLKLD 172 (442)
Q Consensus 164 ~fP~L~~LD 172 (442)
.+++|+.||
T Consensus 495 ~l~~L~~L~ 503 (549)
T 2z81_A 495 RLTSLQKIW 503 (549)
T ss_dssp GCTTCCEEE
T ss_pred cCcccCEEE
Confidence 566666554
No 133
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.24 E-value=5.2e-05 Score=70.51 Aligned_cols=64 Identities=19% Similarity=0.185 Sum_probs=30.1
Q ss_pred CCCccEEeCCCCC-CCCCCCchhhhhccCCCcEEEcCC-CCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 83 LPDLFALNLSENK-LYYPESLISLAKVIPRVKILYLAH-NNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 83 ~~~L~~L~Ls~N~-l~~l~~l~~l~~~~p~L~~L~Ls~-N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
+++|+.|+|++|+ |+.+..-. -..+++|+.|+|++ |+|+.+.. ..+.++++|++|+|.+|.+..
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~--f~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~L~~L~l~~n~l~~ 119 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHS--FYNLSKVTHIEIRNTRNLTYIDP-DALKELPLLKFLGIFNTGLKM 119 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTT--EESCTTCCEEEEEEETTCCEECT-TSEECCTTCCEEEEEEECCCS
T ss_pred CCCCcEEeCCCCCCcceeCHhH--cCCCcCCcEEECCCCCCeeEcCH-HHhCCCCCCCEEeCCCCCCcc
Confidence 4555555555554 55443210 11445555555555 55554331 223344455555555555543
No 134
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.23 E-value=0.00025 Score=76.05 Aligned_cols=12 Identities=33% Similarity=0.479 Sum_probs=4.6
Q ss_pred CCCeEEecCCCC
Q psy1142 136 NLEELRLEKNPW 147 (442)
Q Consensus 136 ~L~eL~L~gNPl 147 (442)
+|+.|+|.+||+
T Consensus 285 ~L~~L~L~~N~l 296 (622)
T 3g06_A 285 SETTVNLEGNPL 296 (622)
T ss_dssp TTCEEECCSCCC
T ss_pred ccCEEEecCCCC
Confidence 333333333333
No 135
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.23 E-value=0.00036 Score=74.73 Aligned_cols=65 Identities=23% Similarity=0.265 Sum_probs=27.3
Q ss_pred CCCccEEeCCCCCCCCCCCch------hhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLI------SLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWT 148 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~------~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~ 148 (442)
++.|+.|+|++|+|+.+..-. .....+++|+.|+|++|+|..+.. ..+.++++|++|+|.+|.+.
T Consensus 503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~ 573 (680)
T 1ziw_A 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV-EVFKDLFELKIIDLGLNNLN 573 (680)
T ss_dssp CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCC
T ss_pred ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH-HHcccccCcceeECCCCCCC
Confidence 445555555555554431100 001134455555555555543321 12333444444444444443
No 136
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.22 E-value=0.0002 Score=74.35 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=36.9
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.++.|+.|+|++|+|+.+.+.. .+++|+.|+|++|.|+.+.. .+..+++|+.|+|.+|.+..
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~----~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDVKGQV----VFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp GTTTCCEEECTTSCCCEEECCC----CCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCE
T ss_pred hCCcccEEecCCCccccccccc----cCCCCCEEECCCCCCCCCCH--hHcCCCCccEEEecCCcCcc
Confidence 4566777777777776654332 46666666666666665432 13444566666666666653
No 137
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.22 E-value=0.00028 Score=74.43 Aligned_cols=83 Identities=18% Similarity=0.205 Sum_probs=49.2
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|+|+.+.+- . ...+++|+.|+|++|+|..+... .+.++++|++|+|.+|.+.... ...
T Consensus 77 ~~l~~L~~L~Ls~n~l~~~~p~-~-~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~------lp~ 147 (606)
T 3vq2_A 77 HGLHHLSNLILTGNPIQSFSPG-S-FSGLTSLENLVAVETKLASLESF-PIGQLITLKKLNVAHNFIHSCK------LPA 147 (606)
T ss_dssp TTCTTCCEEECTTCCCCCCCTT-S-STTCTTCCEEECTTSCCCCSSSS-CCTTCTTCCEEECCSSCCCCCC------CCG
T ss_pred hchhhcCEeECCCCcccccChh-h-cCCcccCCEEEccCCcccccccc-ccCCCCCCCEEeCCCCccccee------chH
Confidence 3456777777777777776321 1 12567777777777777665522 2555667777777777765410 011
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
.+..+++|+.||
T Consensus 148 ~~~~l~~L~~L~ 159 (606)
T 3vq2_A 148 YFSNLTNLVHVD 159 (606)
T ss_dssp GGGTCTTCCEEE
T ss_pred hHhhcCCCCEEE
Confidence 234566666654
No 138
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.21 E-value=0.00021 Score=75.83 Aligned_cols=65 Identities=17% Similarity=0.282 Sum_probs=37.0
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.+++|+.|+|++|.|+.+.+- ....+++|+.|+|++|.|..+.. ..+.++++|++|+|.+|.+..
T Consensus 97 ~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~ 161 (597)
T 3oja_B 97 YAHTIQKLYMGFNAIRYLPPH--VFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLER 161 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCCCEEECCCCcCCCCCHH--HHcCCCCCCEEEeeCCCCCCCCH-HHhccCCCCCEEEeeCCcCCC
Confidence 345666666666666655421 11256666666666666664432 123455666777777776654
No 139
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.17 E-value=0.00037 Score=68.00 Aligned_cols=79 Identities=27% Similarity=0.232 Sum_probs=60.9
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHHH
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVR 162 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i~ 162 (442)
.+.|+.|+|++|+|+.+..- .+ ..+++|+.|+|++|+|..+.. ..+..+++|++|+|.+|.+.. . +. .+
T Consensus 192 ~~~L~~L~l~~n~i~~~~~~-~l-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~-l---p~----~l 260 (332)
T 2ft3_A 192 PETLNELHLDHNKIQAIELE-DL-LRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKLSR-V---PA----GL 260 (332)
T ss_dssp CSSCSCCBCCSSCCCCCCTT-SS-TTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSCCCB-C---CT----TG
T ss_pred cCCCCEEECCCCcCCccCHH-Hh-cCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCcCee-c---Ch----hh
Confidence 36899999999999988631 12 278899999999999988653 245667899999999999985 2 21 14
Q ss_pred hhCCcccccC
Q psy1142 163 KIFPKLLKLD 172 (442)
Q Consensus 163 ~~fP~L~~LD 172 (442)
..+++|+.||
T Consensus 261 ~~l~~L~~L~ 270 (332)
T 2ft3_A 261 PDLKLLQVVY 270 (332)
T ss_dssp GGCTTCCEEE
T ss_pred hcCccCCEEE
Confidence 6688888775
No 140
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.13 E-value=0.00033 Score=73.04 Aligned_cols=65 Identities=20% Similarity=0.220 Sum_probs=38.8
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.+++|+.|+|++|+|+.+..- . ...+++|+.|+|++|+|+.+.... +.++++|++|+|.+|.+..
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~-~-~~~l~~L~~L~L~~n~l~~l~~~~-~~~l~~L~~L~L~~n~l~~ 138 (570)
T 2z63_A 74 SLSHLSTLILTGNPIQSLALG-A-FSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQS 138 (570)
T ss_dssp TCTTCCEEECTTCCCCEECTT-T-TTTCTTCCEEECTTSCCCCSTTCS-CTTCTTCCEEECCSSCCCC
T ss_pred CchhCCEEeCcCCcCCccCHh-h-hcCccccccccccccccccCCCcc-ccccccccEEecCCCccce
Confidence 356677777777776655321 1 125666777777777666655422 4556677777777776654
No 141
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.12 E-value=0.00062 Score=57.94 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=45.4
Q ss_pred cEEeCCCCCCC--CCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCC
Q psy1142 87 FALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWT 148 (442)
Q Consensus 87 ~~L~Ls~N~l~--~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~ 148 (442)
..++.++++|+ .++.- .-++|+.|+|++|+|+.+.. ..+..+++|+.|.|.|||+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~-----lp~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA-----FPVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSC-----CCTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCC-----CCcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCee
Confidence 47899999998 77631 23479999999999998874 45667779999999999983
No 142
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}
Probab=97.11 E-value=0.0015 Score=53.91 Aligned_cols=120 Identities=13% Similarity=0.162 Sum_probs=74.3
Q ss_pred hhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHH
Q psy1142 201 PEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADI 280 (442)
Q Consensus 201 ~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I 280 (442)
++++..+.+.+.+|+..++.+|-..|..+|++++.| ++... ....|+++|
T Consensus 2 ~~~~~~I~~~~~~~~~a~~~~D~~~~~~l~a~Da~~---~~~~~---------------------------~~~~G~~~i 51 (129)
T 3hx8_A 2 QSAKEAIEAANADFVKAYNSKDAAGVASKYMDDAAA---FPPDM---------------------------ARVDGRQNI 51 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEE---ECTTS---------------------------CCEESHHHH
T ss_pred chHHHHHHHHHHHHHHHHHcCCHHHHHHhhCCCeEE---eCCCC---------------------------CcccCHHHH
Confidence 357788999999999999999999999999999998 22110 027899999
Q ss_pred HHHHHhCC---CCccCCCCeeeeecCCCCCeEEEEEeeeEEEe---cCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcce
Q psy1142 281 LRALRFLP---ATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEI---TTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQ 354 (442)
Q Consensus 281 ~~~l~~LP---~t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~---~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~ 354 (442)
.+.+..+. .+.|.+.. .++.. .+... .++|.+.-. .+| ........-+.+++..++|+|+|+.|+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~--~~v~~-~gd~A--~~~~~~~~~~~~~~G----~~~~~~g~~~~v~~r~~dG~W~i~~~~ 122 (129)
T 3hx8_A 52 QKLWQGAMDMGISELKLTT--LDVQE-SGDFA--FESGSFSLKAPGKDS----KLVDAAGKYVVVWRKGQDGGWKLYRDI 122 (129)
T ss_dssp HHHHHHHHHTTCEEEEEEE--EEEEE-ETTEE--EEEEEEEEEEECTTS----CEEEEEEEEEEEEEECTTSCEEEEEEE
T ss_pred HHHHHHHHhCCCceEEEEE--EEEEc-CCCEE--EEEEEEEEEeeCCCC----CeeeeeEEEEEEEEECCCCcEEEEEee
Confidence 99987543 24455543 23332 23332 234444321 012 111112223444444435789999999
Q ss_pred eEeec
Q psy1142 355 LFITS 359 (442)
Q Consensus 355 l~ir~ 359 (442)
+...+
T Consensus 123 ~~~~~ 127 (129)
T 3hx8_A 123 WNSDP 127 (129)
T ss_dssp EEECC
T ss_pred ccccc
Confidence 87654
No 143
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.09 E-value=0.00054 Score=73.51 Aligned_cols=71 Identities=21% Similarity=0.151 Sum_probs=55.1
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHHH
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVR 162 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i~ 162 (442)
+++|+.|+|++|+|+.++ ..+++|+.|+|++|+|+++.. .+++|+.|+|.+|.|... + ..+
T Consensus 220 ~~~L~~L~Ls~N~L~~lp------~~l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~Ls~N~L~~l----p----~~l 280 (622)
T 3g06_A 220 PSGLKELIVSGNRLTSLP------VLPSELKELMVSGNRLTSLPM-----LPSGLLSLSVYRNQLTRL----P----ESL 280 (622)
T ss_dssp CTTCCEEECCSSCCSCCC------CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCCSC----C----GGG
T ss_pred CCCCCEEEccCCccCcCC------CCCCcCcEEECCCCCCCcCCc-----ccccCcEEeCCCCCCCcC----C----HHH
Confidence 477888889888888766 257899999999999997765 567999999999999852 1 124
Q ss_pred hhCCcccccC
Q psy1142 163 KIFPKLLKLD 172 (442)
Q Consensus 163 ~~fP~L~~LD 172 (442)
..+++|+.||
T Consensus 281 ~~l~~L~~L~ 290 (622)
T 3g06_A 281 IHLSSETTVN 290 (622)
T ss_dssp GGSCTTCEEE
T ss_pred hhccccCEEE
Confidence 5677776654
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.07 E-value=0.00031 Score=63.14 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=43.7
Q ss_pred CccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCC-CCCchhhhhcCCC----CCCCeEEecCCC-CCCcCCCchhhH
Q psy1142 85 DLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNN-IKDLATIRTLESL----SNLEELRLEKNP-WTECFNEQDAYT 158 (442)
Q Consensus 85 ~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~-I~~~~~L~~l~~l----~~L~eL~L~gNP-l~~~~~~~~~y~ 158 (442)
.|++|+|+++.|++ .++..+. .+++|+.|+|+++. |+|.. |..+..+ +.|++|+|++++ |++ .. .
T Consensus 62 ~L~~LDLs~~~Itd-~GL~~L~-~~~~L~~L~L~~C~~ItD~g-L~~L~~~~~~~~~L~~L~Ls~C~~ITD-----~G-l 132 (176)
T 3e4g_A 62 KIQAIDATDSCIMS-IGFDHME-GLQYVEKIRLCKCHYIEDGC-LERLSQLENLQKSMLEMEIISCGNVTD-----KG-I 132 (176)
T ss_dssp CEEEEEEESCCCCG-GGGGGGT-TCSCCCEEEEESCTTCCHHH-HHHHHTCHHHHHHCCEEEEESCTTCCH-----HH-H
T ss_pred eEeEEeCcCCCccH-HHHHHhc-CCCCCCEEEeCCCCccCHHH-HHHHHhcccccCCCCEEEcCCCCcCCH-----HH-H
Confidence 46677777666655 3344443 56677777777664 54432 5555443 356677776665 432 12 2
Q ss_pred HHHHhhCCcccccCCc
Q psy1142 159 SEVRKIFPKLLKLDDI 174 (442)
Q Consensus 159 ~~i~~~fP~L~~LDg~ 174 (442)
..+ ..+|+|+.|+=.
T Consensus 133 ~~L-~~~~~L~~L~L~ 147 (176)
T 3e4g_A 133 IAL-HHFRNLKYLFLS 147 (176)
T ss_dssp HHG-GGCTTCCEEEEE
T ss_pred HHH-hcCCCCCEEECC
Confidence 222 345666666543
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.06 E-value=0.00039 Score=62.52 Aligned_cols=89 Identities=22% Similarity=0.185 Sum_probs=61.7
Q ss_pred cCCCCccEEeCCCC-CCCCCCCchhhh---hccCCCcEEEcCCCCCCCchh--h-hhcCCCCCCCeEEecCCCCCCcCCC
Q psy1142 81 ENLPDLFALNLSEN-KLYYPESLISLA---KVIPRVKILYLAHNNIKDLAT--I-RTLESLSNLEELRLEKNPWTECFNE 153 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N-~l~~l~~l~~l~---~~~p~L~~L~Ls~N~I~~~~~--L-~~l~~l~~L~eL~L~gNPl~~~~~~ 153 (442)
...+.|++|+|++| .|.+ .++..+. ...++|+.|+|++|.|.+... | +.++..+.|++|+|.+|.|...
T Consensus 33 ~~~~~L~~L~L~~n~~i~~-~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~--- 108 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPV-PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS--- 108 (185)
T ss_dssp TTCTTCCEEECTTCTTCCH-HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH---
T ss_pred hcCCCCCEEEecCCCCCCH-HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH---
Confidence 56899999999999 9876 2333332 356899999999999987442 2 2344556899999999999762
Q ss_pred chhhHHHHHhhCCcccccCC
Q psy1142 154 QDAYTSEVRKIFPKLLKLDD 173 (442)
Q Consensus 154 ~~~y~~~i~~~fP~L~~LDg 173 (442)
........+...+.|+.||=
T Consensus 109 g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHHHHhCCCceEEEe
Confidence 12233444555566666653
No 146
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.06 E-value=0.00016 Score=71.47 Aligned_cols=64 Identities=13% Similarity=0.114 Sum_probs=39.4
Q ss_pred CCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCe-EEecCCCCCC
Q psy1142 84 PDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE-LRLEKNPWTE 149 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~e-L~L~gNPl~~ 149 (442)
++++.|+|++|+|+.+..- . -..+++|+.|+|++|+|...-+-..+.++++|.+ +.+.+|.+..
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~-~-f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKG-A-FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp TTCSEEEEESCCCSEECTT-S-STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred CCCCEEEccCCcCCCcCHH-H-HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence 4688888888888877531 0 1267788888888888755332334445555554 3444455544
No 147
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.04 E-value=0.00016 Score=67.14 Aligned_cols=83 Identities=17% Similarity=0.156 Sum_probs=54.6
Q ss_pred cCCCCccEEeCCC-CCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCC-CCCCcCCCchhhH
Q psy1142 81 ENLPDLFALNLSE-NKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN-PWTECFNEQDAYT 158 (442)
Q Consensus 81 ~~~~~L~~L~Ls~-N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gN-Pl~~~~~~~~~y~ 158 (442)
..+++|+.|+|++ |+|+.+..- .-..+++|+.|+|++|+|+.+..+..+..++.|++|+|.+| .+... .
T Consensus 77 ~~l~~L~~L~l~~~n~l~~i~~~--~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i-~------ 147 (239)
T 2xwt_C 77 YNLSKVTHIEIRNTRNLTYIDPD--ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI-P------ 147 (239)
T ss_dssp ESCTTCCEEEEEEETTCCEECTT--SEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEE-C------
T ss_pred CCCcCCcEEECCCCCCeeEcCHH--HhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhc-C------
Confidence 4578899999998 999877531 11267889999999999888765443333333338999998 66542 1
Q ss_pred HHHHhhCCccc-ccC
Q psy1142 159 SEVRKIFPKLL-KLD 172 (442)
Q Consensus 159 ~~i~~~fP~L~-~LD 172 (442)
...+..+++|+ .||
T Consensus 148 ~~~~~~l~~L~~~L~ 162 (239)
T 2xwt_C 148 VNAFQGLCNETLTLK 162 (239)
T ss_dssp TTTTTTTBSSEEEEE
T ss_pred cccccchhcceeEEE
Confidence 11234566777 665
No 148
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.00 E-value=0.00049 Score=73.68 Aligned_cols=81 Identities=23% Similarity=0.217 Sum_probs=53.7
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHH
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEV 161 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i 161 (442)
.++.|+.|+|++|+|+.+..- . ...+++|+.|+|++|+|..+.. ..+.++++|++|+|.+|.+...... .
T Consensus 71 ~l~~L~~L~L~~n~l~~l~~~-~-~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~-------~ 140 (680)
T 1ziw_A 71 KLPMLKVLNLQHNELSQLSDK-T-FAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLITLDLSHNGLSSTKLG-------T 140 (680)
T ss_dssp HCTTCCEEECCSSCCCCCCTT-T-TTTCTTCSEEECCSSCCCCCCS-CTTTTCTTCCEEECCSSCCSCCCCC-------S
T ss_pred cccCcCEEECCCCccCccChh-h-hccCCCCCEEECCCCccCccCh-hHccccCCCCEEECCCCcccccCch-------h
Confidence 467788888888888777531 1 1267788888888888866541 2355677888888888887653111 1
Q ss_pred HhhCCcccccC
Q psy1142 162 RKIFPKLLKLD 172 (442)
Q Consensus 162 ~~~fP~L~~LD 172 (442)
+..+++|+.|+
T Consensus 141 ~~~l~~L~~L~ 151 (680)
T 1ziw_A 141 QVQLENLQELL 151 (680)
T ss_dssp SSCCTTCCEEE
T ss_pred hcccccCCEEE
Confidence 24567777764
No 149
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=96.99 E-value=0.00067 Score=74.23 Aligned_cols=62 Identities=21% Similarity=0.186 Sum_probs=35.3
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
.+++|+.|+|++|++....++ ..+++|+.|+|++|++...- ..+..+++|++|+|.+|.+..
T Consensus 176 ~l~~L~~L~Ls~n~l~~~~~~----~~l~~L~~L~Ls~n~l~~~~--~~l~~l~~L~~L~Ls~n~l~~ 237 (768)
T 3rgz_A 176 GCGELKHLAISGNKISGDVDV----SRCVNLEFLDVSSNNFSTGI--PFLGDCSALQHLDISGNKLSG 237 (768)
T ss_dssp CCTTCCEEECCSSEEESCCBC----TTCTTCCEEECCSSCCCSCC--CBCTTCCSCCEEECCSSCCCS
T ss_pred cCCCCCEEECCCCcccccCCc----ccCCcCCEEECcCCcCCCCC--cccccCCCCCEEECcCCcCCC
Confidence 455555555555555544332 25666666666666665422 125556666667776666654
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.99 E-value=0.00036 Score=73.19 Aligned_cols=83 Identities=11% Similarity=0.028 Sum_probs=53.5
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
..+++|+.|+|++|++++. ++..+...+++|+.|+|++|.+.+..-..-...+++|++|+|.+|++.. .-...
T Consensus 453 ~~~~~L~~L~L~~~~i~~~-~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------~~~~~ 525 (594)
T 2p1m_B 453 TYAKKMEMLSVAFAGDSDL-GMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF------GACKL 525 (594)
T ss_dssp HHCTTCCEEEEESCCSSHH-HHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH------HHHHH
T ss_pred HhchhccEeeccCCCCcHH-HHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH------HHHHH
Confidence 3467788888888887542 3444545688888888888888433322233446788888888888732 22334
Q ss_pred HHhhCCcccc
Q psy1142 161 VRKIFPKLLK 170 (442)
Q Consensus 161 i~~~fP~L~~ 170 (442)
+...+|+|..
T Consensus 526 l~~~lp~l~i 535 (594)
T 2p1m_B 526 LGQKMPKLNV 535 (594)
T ss_dssp HHHHCTTEEE
T ss_pred HHHhCCCCEE
Confidence 5577787743
No 151
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=96.94 E-value=0.00098 Score=70.24 Aligned_cols=63 Identities=22% Similarity=0.230 Sum_probs=29.8
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWT 148 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~ 148 (442)
+++|++|+|++|+|+.+.+- . ...+++|+.|+|++|+|..+.. ..+.++++|++|+|.+|.+.
T Consensus 80 l~~L~~L~Ls~n~l~~~~~~-~-~~~l~~L~~L~L~~n~i~~l~~-~~~~~l~~L~~L~L~~n~l~ 142 (606)
T 3t6q_A 80 QHRLDTLVLTANPLIFMAET-A-LSGPKALKHLFFIQTGISSIDF-IPLHNQKTLESLYLGSNHIS 142 (606)
T ss_dssp CTTCCEEECTTCCCSEECTT-T-TSSCTTCCEEECTTSCCSCGGG-SCCTTCTTCCEEECCSSCCC
T ss_pred ccccCeeeCCCCcccccChh-h-hcccccccEeeccccCcccCCc-chhccCCcccEEECCCCccc
Confidence 45566666666666544221 0 1144555555555555554321 12333444445555544443
No 152
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=96.93 E-value=0.00041 Score=73.19 Aligned_cols=68 Identities=22% Similarity=0.231 Sum_probs=46.1
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
..+++|+.|+|++|+++.+.........+++|+.|+|++|+|..+. ...+..+++|++|+|.+|.+..
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK-TEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC-TTTTTTCTTCSEEECTTCCEEC
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCC-HHHhcCCccCCeEECCCCcCCC
Confidence 3467888899999888776421112236788888888888876543 2345566677788887777764
No 153
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=96.92 E-value=0.00045 Score=67.13 Aligned_cols=76 Identities=22% Similarity=0.102 Sum_probs=49.3
Q ss_pred ccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHHHhhC
Q psy1142 86 LFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIF 165 (442)
Q Consensus 86 L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i~~~f 165 (442)
|+.|+|++|+|+...+ .....+++|+.|+|++|+|.... ..+..+++|++|+|.+|.+....+ ..+..+
T Consensus 199 L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~--~~~~~l~~L~~L~Ls~N~l~~~~p-------~~l~~l 267 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDAS--VLFGSDKNTQKIHLAKNSLAFDL--GKVGLSKNLNGLDLRNNRIYGTLP-------QGLTQL 267 (313)
T ss_dssp CSEEECCSSEEEECCG--GGCCTTSCCSEEECCSSEECCBG--GGCCCCTTCCEEECCSSCCEECCC-------GGGGGC
T ss_pred ccEEECcCCcccCcCC--HHHhcCCCCCEEECCCCceeeec--CcccccCCCCEEECcCCcccCcCC-------hHHhcC
Confidence 8888888888875432 12236778888888888886332 235566788888888888764221 123556
Q ss_pred CcccccC
Q psy1142 166 PKLLKLD 172 (442)
Q Consensus 166 P~L~~LD 172 (442)
++|+.||
T Consensus 268 ~~L~~L~ 274 (313)
T 1ogq_A 268 KFLHSLN 274 (313)
T ss_dssp TTCCEEE
T ss_pred cCCCEEE
Confidence 7776664
No 154
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.92 E-value=0.00031 Score=73.67 Aligned_cols=83 Identities=17% Similarity=0.138 Sum_probs=43.5
Q ss_pred CCCccEEeCCCCC--CCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHH
Q psy1142 83 LPDLFALNLSENK--LYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE 160 (442)
Q Consensus 83 ~~~L~~L~Ls~N~--l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~ 160 (442)
+++|+.|+|+++. +++ ..+..+...+++|+.|+|++|+|.+..-..-+.++++|++|+|.+|++.. .-...
T Consensus 435 ~~~L~~L~L~~~~~~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~ 507 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTD-LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE------RAIAA 507 (592)
T ss_dssp CTTCCEEEEECCGGGCCH-HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH------HHHHH
T ss_pred CCCCCEEEEecCCCCccH-HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH------HHHHH
Confidence 5666666665322 332 12333444566666666666666543322233555666666666666532 12334
Q ss_pred HHhhCCcccccC
Q psy1142 161 VRKIFPKLLKLD 172 (442)
Q Consensus 161 i~~~fP~L~~LD 172 (442)
+...+|+|+.||
T Consensus 508 ~~~~l~~L~~L~ 519 (592)
T 3ogk_B 508 AVTKLPSLRYLW 519 (592)
T ss_dssp HHHHCSSCCEEE
T ss_pred HHHhcCccCeeE
Confidence 445566666554
No 155
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=96.91 E-value=0.00038 Score=77.57 Aligned_cols=65 Identities=22% Similarity=0.316 Sum_probs=46.3
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
..+++|+.|+|++|+|+.++....+ ..+++|+.|+|++|+|..+. .+..+++|++|+|.+|.+..
T Consensus 545 ~~l~~L~~L~Ls~N~L~~ip~~~~l-~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L~~L~Ls~N~l~~ 609 (876)
T 4ecn_A 545 DTGPKIQIFYMGYNNLEEFPASASL-QKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLDYNQIEE 609 (876)
T ss_dssp TTTTTCCEEECCSSCCCBCCCHHHH-TTCTTCCEEECTTSCCCBCC---CCCTTSEESEEECCSSCCSC
T ss_pred cccCCccEEEeeCCcCCccCChhhh-hcCCCCCEEECCCCCcccch---hhcCCCcceEEECcCCcccc
Confidence 3456888888888888866541122 26788888888888887444 56667788888888888773
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.90 E-value=0.00066 Score=61.01 Aligned_cols=85 Identities=19% Similarity=0.219 Sum_probs=65.0
Q ss_pred cCCCCccEEeCCCCC-CCCCCCchhhhhc---cCCCcEEEcCCCC-CCCchhhhhcCCCCCCCeEEecCCCCCCcCCCch
Q psy1142 81 ENLPDLFALNLSENK-LYYPESLISLAKV---IPRVKILYLAHNN-IKDLATIRTLESLSNLEELRLEKNPWTECFNEQD 155 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~-l~~l~~l~~l~~~---~p~L~~L~Ls~N~-I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~ 155 (442)
..+++|++|+|+++. |++ .++..+... .++|+.|+|+++. |++.. +..|..+++|++|.|.++|--+ +..
T Consensus 82 ~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~~~L~~L~L~~c~~It---d~g 156 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHFRNLKYLFLSDLPGVK---EKE 156 (176)
T ss_dssp TTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGCTTCCEEEEESCTTCC---CHH
T ss_pred cCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcCCCCCEEECCCCCCCC---chH
Confidence 458999999999995 766 456666642 5689999999975 77744 7788889999999999999444 123
Q ss_pred hhHHHHHhhCCcccc
Q psy1142 156 AYTSEVRKIFPKLLK 170 (442)
Q Consensus 156 ~y~~~i~~~fP~L~~ 170 (442)
--...+.+.+|++++
T Consensus 157 l~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 157 KIVQAFKTSLPSLEL 171 (176)
T ss_dssp HHHHHHHHHCTTCEE
T ss_pred HHHHHHHHHCCCcEE
Confidence 345677889998864
No 157
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.88 E-value=0.00065 Score=71.26 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=39.8
Q ss_pred hcCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 80 NENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 80 ~~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
...+++|+.|+|++|++++. ++..+...+++|+.|+|++|.|.+..-..-+..+++|++|+|.+|.+..
T Consensus 459 ~~~~~~L~~L~L~~n~l~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 459 GQYSPNVRWMLLGYVGESDE-GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHSCTTCCEEEECSCCSSHH-HHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHhCccceEeeccCCCCCHH-HHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 34566777777777776542 2333444567777777777776432211122345677777777777654
No 158
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=96.87 E-value=0.0012 Score=68.65 Aligned_cols=67 Identities=28% Similarity=0.294 Sum_probs=54.2
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
..+++|+.|+|++|+|+.+.... ...+++|+.|+|++|.|..+.--..+.++++|++|+|.+|.+..
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~--~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCS--CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred cCccccccccccccccccCCCcc--ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 45789999999999999987532 23789999999999999875433456667799999999999876
No 159
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=96.86 E-value=0.0013 Score=72.80 Aligned_cols=84 Identities=23% Similarity=0.267 Sum_probs=56.9
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCc-hhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDL-ATIRTLESLSNLEELRLEKNPWTECFNEQDAYTS 159 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~-~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~ 159 (442)
.++++|+.|+|++|+|+.+.+ .....+++|+.|+|++|.|.+. -.-..+.++++|++|+|.+|.+......
T Consensus 70 ~~L~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~------ 141 (844)
T 3j0a_A 70 RNLPNLRILDLGSSKIYFLHP--DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH------ 141 (844)
T ss_dssp SSCTTCCEEECTTCCCCEECT--TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCC------
T ss_pred cCCCCCCEEECCCCcCcccCH--hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccc------
Confidence 457889999999999987632 1123788999999999988752 2222366778899999999988763110
Q ss_pred HHHhhCCcccccC
Q psy1142 160 EVRKIFPKLLKLD 172 (442)
Q Consensus 160 ~i~~~fP~L~~LD 172 (442)
..+..+++|+.||
T Consensus 142 ~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 142 PSFGKLNSLKSID 154 (844)
T ss_dssp GGGGTCSSCCEEE
T ss_pred hhHhhCCCCCEEE
Confidence 1234566666554
No 160
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.86 E-value=0.00069 Score=71.93 Aligned_cols=56 Identities=21% Similarity=0.234 Sum_probs=35.7
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
+++|+.|+|++|+|+.++. .+++|+.|+|++|+|+.+.. +. ++|+.|+|.+|.|..
T Consensus 139 l~~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~L~~lp~---l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 139 PALLEYINADNNQLTMLPE------LPTSLEVLSVRNNQLTFLPE---LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSCCCC---CC--TTCCEEECCSSCCSS
T ss_pred CccccEEeCCCCccCcCCC------cCCCcCEEECCCCCCCCcch---hh--CCCCEEECcCCCCCc
Confidence 4567777777777766543 35677777777777766554 22 466666666666653
No 161
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=96.83 E-value=0.00045 Score=67.13 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=47.6
Q ss_pred CccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchhhHHHHHhh
Q psy1142 85 DLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKI 164 (442)
Q Consensus 85 ~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~y~~~i~~~ 164 (442)
.|+.|+|++|+|+...+ ..+. .+. |+.|+|++|+|.... -..+..+++|++|+|.+|.+....+ . ...
T Consensus 175 ~L~~L~L~~N~l~~~~~-~~~~-~l~-L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~---~-----~~~ 242 (313)
T 1ogq_A 175 LFTSMTISRNRLTGKIP-PTFA-NLN-LAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDLG---K-----VGL 242 (313)
T ss_dssp TCCEEECCSSEEEEECC-GGGG-GCC-CSEEECCSSEEEECC-GGGCCTTSCCSEEECCSSEECCBGG---G-----CCC
T ss_pred cCcEEECcCCeeeccCC-hHHh-CCc-ccEEECcCCcccCcC-CHHHhcCCCCCEEECCCCceeeecC---c-----ccc
Confidence 78888888888864321 1111 333 888888888886432 2345667788888888888865211 1 244
Q ss_pred CCcccccC
Q psy1142 165 FPKLLKLD 172 (442)
Q Consensus 165 fP~L~~LD 172 (442)
+++|+.||
T Consensus 243 l~~L~~L~ 250 (313)
T 1ogq_A 243 SKNLNGLD 250 (313)
T ss_dssp CTTCCEEE
T ss_pred cCCCCEEE
Confidence 67777665
No 162
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=96.80 E-value=0.00095 Score=71.50 Aligned_cols=83 Identities=18% Similarity=0.078 Sum_probs=43.7
Q ss_pred CCCCccEEeCCCCCCCCCCCc--hhh---hhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCCcCCCchh
Q psy1142 82 NLPDLFALNLSENKLYYPESL--ISL---AKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDA 156 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l--~~l---~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~~~~~~~~ 156 (442)
.+++|+.|+|++|+|+.++.- ... ...+++|+.|+|++|+|..+..--....+++|++|+|++|.+.. .+.
T Consensus 455 ~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~--- 530 (636)
T 4eco_A 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPT--- 530 (636)
T ss_dssp TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCC---
T ss_pred cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cCh---
Confidence 356666666666666655421 000 01122677777777777644421111256677777777777765 211
Q ss_pred hHHHHHhhCCcccccC
Q psy1142 157 YTSEVRKIFPKLLKLD 172 (442)
Q Consensus 157 y~~~i~~~fP~L~~LD 172 (442)
-+..+++|+.||
T Consensus 531 ----~~~~l~~L~~L~ 542 (636)
T 4eco_A 531 ----QPLNSSTLKGFG 542 (636)
T ss_dssp ----GGGGCSSCCEEE
T ss_pred ----hhhcCCCCCEEE
Confidence 123466666664
No 163
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=96.75 E-value=0.0019 Score=68.08 Aligned_cols=67 Identities=28% Similarity=0.210 Sum_probs=52.7
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
..+++|++|+|++|+|+.+.... ...+++|+.|+|++|.|.+..--..+.++++|++|+|.+|.+..
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFP--IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSC--CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred CCcccCCEEEccCCccccccccc--cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 45788999999999998886432 23788999999999999864433456677799999999998876
No 164
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=96.71 E-value=0.00085 Score=73.42 Aligned_cols=65 Identities=29% Similarity=0.317 Sum_probs=30.4
Q ss_pred CCCccEEeCCCCCCCCC-CCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCC
Q psy1142 83 LPDLFALNLSENKLYYP-ESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWT 148 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l-~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~ 148 (442)
+++|++|+|++|+++.. .....+ ..+++|+.|+|++|.+.......-+..+++|++|+|.+|.+.
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 164 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGPVTTLTSL-GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164 (768)
T ss_dssp CTTCCEEECCSSEEEEEGGGGGGG-GGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE
T ss_pred CCCCCEEECCCCcCCCcCCChHHH-hCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC
Confidence 45566666666665431 111112 245556666666655543222222233445555555555544
No 165
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=96.65 E-value=0.0018 Score=72.19 Aligned_cols=67 Identities=15% Similarity=0.072 Sum_probs=29.5
Q ss_pred CCCccEEeCCCCCCCCCCCch-h-h---hhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLI-S-L---AKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~-~-l---~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
+++|+.|+|++|+|+.++... . . ...+++|+.|+|++|+|..+...-....+++|++|+|.+|.+..
T Consensus 696 l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp TCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred CCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc
Confidence 455555555555555443210 0 0 00122555555555555543321111145555555555555544
No 166
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=96.65 E-value=0.001 Score=71.31 Aligned_cols=77 Identities=19% Similarity=0.207 Sum_probs=53.2
Q ss_pred CccEEeCCCCCCCCCCCchhhh-hccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecC------CCCCCcCCCchhh
Q psy1142 85 DLFALNLSENKLYYPESLISLA-KVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEK------NPWTECFNEQDAY 157 (442)
Q Consensus 85 ~L~~L~Ls~N~l~~l~~l~~l~-~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~g------NPl~~~~~~~~~y 157 (442)
+|+.|+|++|+|+.++. .+. ..+++|+.|+|++|+|..+. ..+..+++|++|+|.+ |.+....+
T Consensus 489 ~L~~L~Ls~N~l~~lp~--~~~~~~l~~L~~L~Ls~N~l~~ip--~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p----- 559 (636)
T 4eco_A 489 LLTSIDLRFNKLTKLSD--DFRATTLPYLVGIDLSYNSFSKFP--TQPLNSSTLKGFGIRNQRDAQGNRTLREWP----- 559 (636)
T ss_dssp GCCEEECCSSCCCBCCG--GGSTTTCTTCCEEECCSSCCSSCC--CGGGGCSSCCEEECCSCBCTTCCBCCCCCC-----
T ss_pred CccEEECcCCcCCccCh--hhhhccCCCcCEEECCCCCCCCcC--hhhhcCCCCCEEECCCCcccccCcccccCh-----
Confidence 88999999999987653 121 36889999999999998753 2344577889999954 44444221
Q ss_pred HHHHHhhCCcccccC
Q psy1142 158 TSEVRKIFPKLLKLD 172 (442)
Q Consensus 158 ~~~i~~~fP~L~~LD 172 (442)
..+..+++|+.||
T Consensus 560 --~~l~~l~~L~~L~ 572 (636)
T 4eco_A 560 --EGITLCPSLTQLQ 572 (636)
T ss_dssp --TTGGGCSSCCEEE
T ss_pred --HHHhcCCCCCEEE
Confidence 2235578887775
No 167
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.64 E-value=0.0019 Score=66.29 Aligned_cols=38 Identities=32% Similarity=0.308 Sum_probs=24.7
Q ss_pred CCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCc
Q psy1142 84 PDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDL 125 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~ 125 (442)
++|+.|+|++|+|+.++.+. .+++|+.|+|++|+|+.+
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~----~l~~L~~L~l~~N~l~~l 168 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQ----NSSFLKIIDVDNNSLKKL 168 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCT----TCTTCCEEECCSSCCSCC
T ss_pred CCCCEEECcCCCCCCCcccC----CCCCCCEEECCCCcCccc
Confidence 46777777777777765432 556666666666666553
No 168
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.64 E-value=0.0019 Score=66.33 Aligned_cols=57 Identities=23% Similarity=0.286 Sum_probs=33.8
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWT 148 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~ 148 (442)
.++|+.|+|++|+|+.++.+. .+++|+.|+|++|+|..+..+ .++|++|+|.+|.+.
T Consensus 172 ~~~L~~L~L~~n~l~~l~~~~----~l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 172 PPSLEFIAAGNNQLEELPELQ----NLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNILE 228 (454)
T ss_dssp CTTCCEEECCSSCCSSCCCCT----TCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSCCS
T ss_pred cccccEEECcCCcCCcCcccc----CCCCCCEEECCCCcCCcCCCC-----cCcccEEECcCCcCC
Confidence 357888888888887765432 566666666666666543321 124455555555444
No 169
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.54 E-value=0.00097 Score=69.85 Aligned_cols=84 Identities=17% Similarity=0.163 Sum_probs=43.5
Q ss_pred cCCCCccEEeCC--C----CCCCCCC---CchhhhhccCCCcEEEcCCCCCCCchhhhhcCC-CCCCCeEEecCCCCCCc
Q psy1142 81 ENLPDLFALNLS--E----NKLYYPE---SLISLAKVIPRVKILYLAHNNIKDLATIRTLES-LSNLEELRLEKNPWTEC 150 (442)
Q Consensus 81 ~~~~~L~~L~Ls--~----N~l~~l~---~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~-l~~L~eL~L~gNPl~~~ 150 (442)
..+++|+.|+|+ + |+++... ++..+...+++|+.|+|++ .|.+.. +..+.. +++|++|+|.+|.+..
T Consensus 394 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~-~~~l~~~~~~L~~L~L~~~~i~~- 470 (594)
T 2p1m_B 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV-FEYIGTYAKKMEMLSVAFAGDSD- 470 (594)
T ss_dssp HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH-HHHHHHHCTTCCEEEEESCCSSH-
T ss_pred hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHH-HHHHHHhchhccEeeccCCCCcH-
Confidence 457778888887 4 5555432 2333344566666666655 444321 222222 4566666666666533
Q ss_pred CCCchhhHHHHHhhCCcccccC
Q psy1142 151 FNEQDAYTSEVRKIFPKLLKLD 172 (442)
Q Consensus 151 ~~~~~~y~~~i~~~fP~L~~LD 172 (442)
.-...+...+|+|+.||
T Consensus 471 -----~~~~~l~~~~~~L~~L~ 487 (594)
T 2p1m_B 471 -----LGMHHVLSGCDSLRKLE 487 (594)
T ss_dssp -----HHHHHHHHHCTTCCEEE
T ss_pred -----HHHHHHHhcCCCcCEEE
Confidence 11223334566665554
No 170
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}
Probab=96.47 E-value=0.01 Score=50.90 Aligned_cols=120 Identities=16% Similarity=0.161 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHH
Q psy1142 202 EARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADIL 281 (442)
Q Consensus 202 ~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~ 281 (442)
+.+..+.+.+..|+..||.+|-..|..+|++++.|. .+. . ...|+++|.
T Consensus 16 ~d~~~i~~l~~~y~~A~~~~D~d~~~~lf~~Da~~~--~~g------~-----------------------~~~Gr~aI~ 64 (143)
T 4i4k_A 16 AALAAVAALPARIVAAWADHDADRFADVFAEDGTMI--LPG------L-----------------------FRKGRENIR 64 (143)
T ss_dssp HHHHHHHTHHHHHHHHHHTTCHHHHHTTEEEEEEEE--ETT------E-----------------------EEESHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHhhcCceEE--eCC------C-----------------------eecCHHHHH
Confidence 345678899999999999989999999999999985 221 1 278999999
Q ss_pred HHHHhC-----CCCccCCCCeeeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeE
Q psy1142 282 RALRFL-----PATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLF 356 (442)
Q Consensus 282 ~~l~~L-----P~t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~ 356 (442)
+.+... +.+.+... ..++....+...++...|.+.. +| .......+.+.-|++++.. +|+|+|+..+-.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~--~~~i~~~~~d~A~v~~~~~~~~--~g-~~~~~~~~~~~~T~v~~r~-~g~WrI~~~h~S 138 (143)
T 4i4k_A 65 THMAAAFAGPYKGTRVIGS--PIDARLLGDGIALLITEGGILA--PG-ETEASGDGAVRASWLAVEQ-DGQWRLAAYQNS 138 (143)
T ss_dssp HHHHHHHHTTTTTCEEEEE--EEEEEEEETTEEEEEEEEEEEC--TT-CSSCCGGGEEEEEEEEEEE-TTEEEEEEEEEE
T ss_pred HHHHHHHhhcCCCCeEEee--eEEEEEcCCCEEEEEeccceec--CC-CCCCCcccceEEEEEEEEE-CCcEEEEEecCC
Confidence 998754 33333222 2444433444444444555542 22 1101123556668888876 467999997765
Q ss_pred ee
Q psy1142 357 IT 358 (442)
Q Consensus 357 ir 358 (442)
.+
T Consensus 139 ~v 140 (143)
T 4i4k_A 139 PR 140 (143)
T ss_dssp EC
T ss_pred cc
Confidence 43
No 171
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=96.46 E-value=0.0032 Score=60.20 Aligned_cols=41 Identities=15% Similarity=0.340 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHhh
Q psy1142 390 IKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQL 430 (442)
Q Consensus 390 ~q~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l 430 (442)
.|+++|.+|+..||-+..-|+.||+.++||++.|+..|-+-
T Consensus 14 ~~~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~ 54 (270)
T 3bq3_A 14 PEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDK 54 (270)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 47789999999999999999999999999999999998754
No 172
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.27 E-value=0.00092 Score=64.11 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=45.9
Q ss_pred EeCCCCCCCCCCC-chhhhhccCCCcEEEcCCCCCCCchhhhh-cCCCCCCCeEEecCCCCCC
Q psy1142 89 LNLSENKLYYPES-LISLAKVIPRVKILYLAHNNIKDLATIRT-LESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 89 L~Ls~N~l~~l~~-l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~-l~~l~~L~eL~L~gNPl~~ 149 (442)
++++.|++..+.. +..+...+|+|+.|+|++|+|.++..+.. +..+++|+.|+|++|.|..
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 5556665544433 22233579999999999999999887753 3468899999999999987
No 173
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=96.23 E-value=0.014 Score=42.44 Aligned_cols=49 Identities=18% Similarity=0.389 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHhhhhc--CCCCc
Q psy1142 390 IKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQLKAK--NALPS 438 (442)
Q Consensus 390 ~q~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~--~~iP~ 438 (442)
.-+..+..|-+-||-++-.++..||.-+||+..|+.-|++|... |++|+
T Consensus 16 dmdavls~fvrstgaepgLaRDlleGKnWDl~AAL~D~eqLrqvh~~nlp~ 66 (73)
T 2l2d_A 16 DMDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDYEQLRQVHTANLPH 66 (73)
T ss_dssp CHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHCCSSSSSC
T ss_pred HHHHHHHHHHHhcCCCcchhHHhhccCCccHhHHhhhHHHHHHHHhcCCCC
Confidence 35678899999999999999999999999999999999999864 66765
No 174
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=96.15 E-value=0.023 Score=47.02 Aligned_cols=120 Identities=15% Similarity=0.203 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHH
Q psy1142 204 RDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRA 283 (442)
Q Consensus 204 ~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~ 283 (442)
...+.+.+++|+..+|.+|-..+..+|++++.|. ... . . ...|+++|.+.
T Consensus 10 ~~~i~~~~~~~~~a~~~~D~~~~~~l~a~D~v~~---~~~--~--~-----------------------~~~G~~ai~~~ 59 (135)
T 3d9r_A 10 LAVIEAAAIAYLTAFNRADIPAVIATYTDDGVLM---GPG--R--P-----------------------AAVGKDELAEV 59 (135)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEE---CTT--S--C-----------------------CEESHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEE---CCC--C--C-----------------------cccCHHHHHHH
Confidence 3568889999999999989999999999999883 111 0 0 15799999999
Q ss_pred HHhCCC-CccCCCCeee-eecCCCCCeEEEE--EeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeEee
Q psy1142 284 LRFLPA-TKHDLLSFTC-DCPLYTPGLIQFS--VCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFIT 358 (442)
Q Consensus 284 l~~LP~-t~H~~~sf~v-D~~~~~~~~l~i~--V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~ir 358 (442)
+..+-. ....+ .+.+ ++....+....+. .+|.+....+| ........-+++++...+|+|+|..+++...
T Consensus 60 ~~~~~~~~~~~~-~~~~~~i~~~~gd~a~~~~~~~~~~~~~~~g----~~~~~~~~~~~v~~~~~dG~W~i~~~~~s~~ 133 (135)
T 3d9r_A 60 YLSVFETVGFDM-AYEIKEVVQTSADWAFVRSATEGTETNKATG----VVTPAAYQELFLLRKSATGSWQTARYCTSKI 133 (135)
T ss_dssp HHHHHHHEEEEE-EEEEEEEEEEETTEEEEEEEEEEEEEETTTC----CEEEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred HHHHHhhcCCce-eEEEEEEEEecCCEEEEEEEEEEEEecCCCC----CceeecccEEEEEEecCCCcEEEEEEeeccc
Confidence 987532 11111 1112 2222123222221 22332211011 1122334556777765357899999998764
No 175
>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}
Probab=96.15 E-value=0.037 Score=47.61 Aligned_cols=120 Identities=18% Similarity=0.274 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHH
Q psy1142 204 RDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRA 283 (442)
Q Consensus 204 ~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~ 283 (442)
+..+.+++..|...||..|-..|..+|++++.|. +.+ + ....|+++|.+.
T Consensus 5 ~~aI~~l~~~~~~A~~~~D~d~~~~lf~~Da~~~-~~~---G--------------------------~~~~Gr~aI~~~ 54 (146)
T 3gzr_A 5 TDAIQALIQAYFTAWNTNAPERFAEIFWPDGSWV-NVV---G--------------------------MHWRGRDQIVFA 54 (146)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGSGGGEEEEEEEE-CTT---C--------------------------CEEESHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHhhccCCeEEE-cCC---C--------------------------CeeeCHHHHHHH
Confidence 4678899999999999989999999999999984 111 0 127899999999
Q ss_pred HHhCC-----CCccCCCCeeeeecCCCCCeEEEEEeeeEEE----ecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcce
Q psy1142 284 LRFLP-----ATKHDLLSFTCDCPLYTPGLIQFSVCGLYEE----ITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQ 354 (442)
Q Consensus 284 l~~LP-----~t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e----~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~ 354 (442)
+.... .+.+.+. ..++....+...+ |++.+.- ..+|. .........|++++.. +|+|+|+.++
T Consensus 55 ~~~~~~~~~~~~~~~~~--~~~i~~~~~D~A~--v~~~~~l~g~~~~~G~---~~~~~~~~~t~v~vr~-dg~WrI~a~h 126 (146)
T 3gzr_A 55 HTAFLKTIFKDCKQELV--TIEARTIAPGSAL--AVVTLIQDAYVTPDGR---QMPRAHDRLTLLAVER-EGVWRFIHGH 126 (146)
T ss_dssp HHHHHHTTTTTCCEEEE--EEEEEEEETTEEE--EEEEEEECCEECTTCC---EECCEEEEEEEEEEEE-TTEEEEEEEE
T ss_pred HHHHhhcccCCCEEEEe--EEEEEEcCCCEEE--EEEEEEecceeCCCCC---cCCccCcEEEEEEEEE-CCEEEEEEEe
Confidence 86532 2222221 1344444444333 3333321 11220 0011235677888776 4689999999
Q ss_pred eEeecCC
Q psy1142 355 LFITSAT 361 (442)
Q Consensus 355 l~ir~~s 361 (442)
-+...+.
T Consensus 127 ~s~v~p~ 133 (146)
T 3gzr_A 127 NTIVNPD 133 (146)
T ss_dssp EEECCTT
T ss_pred cccCcCC
Confidence 9877544
No 176
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.15 E-value=0.019 Score=52.31 Aligned_cols=127 Identities=13% Similarity=0.169 Sum_probs=82.4
Q ss_pred HHHHHHHHHhhcCCcccceEeCCCC-CCCccccccCccccCCchhHHHHHHHHHhcCCCCccEEeCCCCCCCCCC--Cch
Q psy1142 27 IKDKIKLVMAKRYNGDNKALDLSKF-YADPDFVEANMFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPE--SLI 103 (442)
Q Consensus 27 ~~~~l~~~l~~ry~~~~~~LdLs~l-~~dp~L~~~~i~~~ln~~~~~~~~l~i~~~~~~~L~~L~Ls~N~l~~l~--~l~ 103 (442)
..+.|..++.. +...+.|||++. ... .. -..++.+... .-..|+.|+|++|+|.+-. .+.
T Consensus 29 v~~~l~~ll~~--n~~L~~L~L~~nn~ig----d~----------ga~~la~aL~-~N~~L~~L~L~~n~igd~ga~alA 91 (197)
T 1pgv_A 29 VESCINRLRED--DTDLKEVNINNMKRVS----KE----------RIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLI 91 (197)
T ss_dssp HHHHHHHHHTT--CSSCCEEECTTCCSSC----HH----------HHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHH
T ss_pred HHHHHHHHHhc--CCCccEEECCCCCCCC----HH----------HHHHHHHHHh-hCCCcCEEEccCCCCChHHHHHHH
Confidence 45566666543 667888998754 221 11 1233444343 3568999999999997642 233
Q ss_pred hhhhccCCCcEEEcCCCCCCCchhh---hhcCCCCCCCeEEecCC---CCCCcCCCchhhHHHHHhhCCcccccCC
Q psy1142 104 SLAKVIPRVKILYLAHNNIKDLATI---RTLESLSNLEELRLEKN---PWTECFNEQDAYTSEVRKIFPKLLKLDD 173 (442)
Q Consensus 104 ~l~~~~p~L~~L~Ls~N~I~~~~~L---~~l~~l~~L~eL~L~gN---Pl~~~~~~~~~y~~~i~~~fP~L~~LDg 173 (442)
.....-..|+.|+|++|.|.+.... +.|+.-+.|++|+|.+| .+... ....+.++++.-+.|..||-
T Consensus 92 ~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~---g~~~ia~aL~~N~tL~~L~l 164 (197)
T 1pgv_A 92 ELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ---VEMDMMMAIEENESLLRVGI 164 (197)
T ss_dssp HHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH---HHHHHHHHHHHCSSCCEEEC
T ss_pred HHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH---HHHHHHHHHHhCCCcCeEec
Confidence 3334567899999999999876643 34665568999999865 44321 12356677788888887763
No 177
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.83 E-value=0.0041 Score=62.12 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=19.5
Q ss_pred cCCCcEEEcCCCCCCCc--hhhhhcCCCCCCCeEEecCCCCC
Q psy1142 109 IPRVKILYLAHNNIKDL--ATIRTLESLSNLEELRLEKNPWT 148 (442)
Q Consensus 109 ~p~L~~L~Ls~N~I~~~--~~L~~l~~l~~L~eL~L~gNPl~ 148 (442)
+|+|+.|+|++|.|.+. ..+.....+++|++|+|+.|.+.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 55666666655555431 12222223455566666555554
No 178
>3h51_A Putative calcium/calmodulin dependent protein KIN association domain; NP_636218.1; HET: MSE PG4; 1.70A {Xanthomonas campestris PV}
Probab=95.45 E-value=0.12 Score=44.43 Aligned_cols=126 Identities=15% Similarity=0.126 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHH
Q psy1142 203 ARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILR 282 (442)
Q Consensus 203 ~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~ 282 (442)
-+..+.+.+.+|+..++.+|-..+..+|++++.|- +..+. ....|+++|.+
T Consensus 18 d~~~I~~~~~~~~~A~~~~D~~~l~~l~a~Dav~~---~~~~~--------------------------~~~~G~~~i~~ 68 (156)
T 3h51_A 18 EAREVAALFDTWNAALATGNPHKVADLYAPDGVLL---PTVSN--------------------------EVRASREQIEN 68 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEE---CSSCS--------------------------SCBCSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEEe---cCCCC--------------------------ccccCHHHHHH
Confidence 45678899999999999989999999999998873 21100 12689999999
Q ss_pred HHHhCCCCccCCCCee-eeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeEeecCC
Q psy1142 283 ALRFLPATKHDLLSFT-CDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSAT 361 (442)
Q Consensus 283 ~l~~LP~t~H~~~sf~-vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~ir~~s 361 (442)
.|..+....-. ..+. -++....+... .++|.+.-.... ..+........-|++++.. +|+|+|+.++....+..
T Consensus 69 ~~~~~~~~~~~-~~i~~~~i~~~~gd~A--~~~~~~~~~~~~-~~G~~~~~~~r~t~v~~r~-dG~WkIv~~H~S~~p~~ 143 (156)
T 3h51_A 69 YFEMFLTKKPK-GVINYRTVRLLDDDSA--VDAGVYTFTLTD-KNGKKSDVQARYTFVYEKR-DGKWLIINHHSSAMPEV 143 (156)
T ss_dssp HHHHHGGGCCE-EEEEEEEEEECSSSEE--EEEEEEEEEEEC-TTSCEEEEEEEEEEEEEEE-TTEEEEEEEEEEECSCC
T ss_pred HHHHHHhhCCC-CcccceEEEEecCCeE--EEEEEEEEEEEc-CCCCeEEEEeEEEEEEEEE-CCEEEEEEEeecCCCcc
Confidence 98865321100 0111 12222334333 345554321000 0001112223345666655 56899999999877554
Q ss_pred h
Q psy1142 362 P 362 (442)
Q Consensus 362 ~ 362 (442)
+
T Consensus 144 ~ 144 (156)
T 3h51_A 144 D 144 (156)
T ss_dssp C
T ss_pred c
Confidence 3
No 179
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.40 E-value=0.0029 Score=63.22 Aligned_cols=66 Identities=11% Similarity=0.265 Sum_probs=43.6
Q ss_pred CCCccEEeCCCCCCCCCCCchhhh--hccCCCcEEEcCCCCCCCch--hh-hhcCCCCCCCeEEecCCCCCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLA--KVIPRVKILYLAHNNIKDLA--TI-RTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~--~~~p~L~~L~Ls~N~I~~~~--~L-~~l~~l~~L~eL~L~gNPl~~ 149 (442)
+|+|+.|+|++|.|.+-. ...+. ..+|+|+.|+|+.|.|.+.. .+ ..+..+++|++|+|.+|++.+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~-~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVV-VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CTTCCEEEEESCTTHHHH-HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCcCEEeCCCCCCchHH-HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 455555555555554311 11122 25889999999999998854 22 233456799999999999875
No 180
>3cu3_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Nostoc punctiforme} SCOP: d.17.4.28
Probab=95.34 E-value=0.033 Score=48.84 Aligned_cols=120 Identities=16% Similarity=0.122 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHH
Q psy1142 203 ARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILR 282 (442)
Q Consensus 203 ~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~ 282 (442)
.+..+.+.+..|+..+|.+|...+..+|++++.|. ... + ....|+++|.+
T Consensus 14 d~~aI~~~~~~~~~A~~~~D~d~~~~lfa~Da~~~---~~~-g--------------------------~~~~Gr~aI~~ 63 (172)
T 3cu3_A 14 DESAIRAFHRQMIDAWNRGSGEGFAAPFSETADFI---TFE-G--------------------------THLKGRKEIAA 63 (172)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEE---CTT-C--------------------------CEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHhhcCCCeEEE---eCC-C--------------------------CeEECHHHHHH
Confidence 45678899999999999989999999999999984 110 0 13789999999
Q ss_pred HHHhCC-----CCccCCCCeeeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeEe
Q psy1142 283 ALRFLP-----ATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFI 357 (442)
Q Consensus 283 ~l~~LP-----~t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~i 357 (442)
.+..+. .+.|.... .++....+....+...+.+.- .+ .......+.+.-+++++.. +|+|+|+..+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~--~~v~~~~~d~A~v~~~~~~~~--~g-~~~~~~~~~~~~t~v~~r~-dG~WrI~~~~~s~ 137 (172)
T 3cu3_A 64 FHQQAFDTVVKGTRLEGEV--DFVRFVNSQLALMLVVIRVIL--PG-QTETSASRDSLPLYVVTKG-DEGWQIEGLLNTR 137 (172)
T ss_dssp HHHHHHHTTTTTCEEEEEE--EEEEEEETTEEEEEEEEEEEC--TT-CSSBCGGGCBCCEEEEEEE-TTEEEEEEEECCB
T ss_pred HHHHHhhccCCCcEEEEEE--eEEEEeCCCEEEEEEEEEEEe--CC-CCCcCCccceEEEEEEEEe-CCeEEEEEEEcCc
Confidence 987642 23332221 333323344444444444542 22 1000112334445566554 4679999988774
Q ss_pred e
Q psy1142 358 T 358 (442)
Q Consensus 358 r 358 (442)
.
T Consensus 138 ~ 138 (172)
T 3cu3_A 138 K 138 (172)
T ss_dssp C
T ss_pred c
Confidence 4
No 181
>2chc_A Protein RV3472; hypothetical protein; 1.69A {Mycobacterium tuberculosis} SCOP: d.17.4.25
Probab=95.15 E-value=0.088 Score=45.86 Aligned_cols=115 Identities=11% Similarity=0.117 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHH
Q psy1142 203 ARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILR 282 (442)
Q Consensus 203 ~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~ 282 (442)
.+..+.+++..|+..+|.+|-..+..+|++++.+. .+. . ...|+++|.+
T Consensus 12 d~~~I~~l~~~y~~a~D~~D~~~~~~lf~~Da~~~--~~g-----~------------------------~~~G~~~i~~ 60 (170)
T 2chc_A 12 EILRIQALCARYCLTINTQDGEGWAGCFTEDGAFE--FDG-----W------------------------VIRGRPALRE 60 (170)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHTTEEEEEEEE--ETT-----E------------------------EEESHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHhcccCcEEEE--eCC-----C------------------------CcCCHHHHHH
Confidence 35678899999999999988899999999999975 210 0 1578888888
Q ss_pred HHHhC---CCCccCCCCeeeeecCCCCCeEEEEEeeeEEE---ecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeE
Q psy1142 283 ALRFL---PATKHDLLSFTCDCPLYTPGLIQFSVCGLYEE---ITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLF 356 (442)
Q Consensus 283 ~l~~L---P~t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e---~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~ 356 (442)
.+... +.+.|.++...+++.. ... +|++.+.. ..+| ......-..+.+++.. +|+|+|..-.+.
T Consensus 61 ~~~~~~~~~~~~h~~~~~~i~~~g---d~A--~~~~~~~~~~~~~~g----~~~~~~g~y~d~~~r~-dg~Wri~~r~~~ 130 (170)
T 2chc_A 61 YADAHARVVRGRHLTTDLLYEVDG---DVA--TGRSASVVTLATAAG----YKILGSGEYQDRLIKQ-DGQWRIAYRRLR 130 (170)
T ss_dssp HHHHHHHHCCCCEEEEEEEEEEET---TEE--EEEEEEEEEEEETTE----EEEEEEEEEEEEEEEE-TTEEEEEEEEEE
T ss_pred HHHHhhcccceEEecCCeEEEEeC---CEE--EEEEEEEEEEEcCCC----CEEEEEEEEEEEEEEE-CCEEEEEEEEEE
Confidence 87653 6789988776666532 222 23333311 1111 1111223345555554 467999998887
Q ss_pred ee
Q psy1142 357 IT 358 (442)
Q Consensus 357 ir 358 (442)
+.
T Consensus 131 ~~ 132 (170)
T 2chc_A 131 ND 132 (170)
T ss_dssp EC
T ss_pred Ee
Confidence 76
No 182
>3b8l_A Uncharacterized protein; putative aromatic ring hydroxylase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.75A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=95.13 E-value=0.058 Score=46.69 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=76.3
Q ss_pred ChhhHHHHHHHHHHHhhcccc-cChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHH
Q psy1142 200 HPEARDILRAFLEQYFALFDT-ESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKA 278 (442)
Q Consensus 200 ~~~~~~~~~~Fl~~yf~~~D~-~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~ 278 (442)
..+.+..+.+++..|+..+|. +|-..+..+|++++.|. .+. .. .....|++
T Consensus 23 ~l~d~~~I~~l~~~y~~alD~~~D~d~~~~lfteDa~~~--~~~-------~g-------------------~~~~~G~~ 74 (163)
T 3b8l_A 23 PIEDRLAIQDLMIAYAHAVDTVSDIDAVLDVFTEDAVFD--LSG-------IG-------------------LTPQVGHA 74 (163)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTEEEEEEEE--CGG-------GT-------------------CCCEEHHH
T ss_pred hHHHHHHHHHHHHHHHHHHCcCCCHHHHHhhcCCCEEEE--ecC-------CC-------------------CCCccCHH
Confidence 344567899999999999999 99999999999999975 210 00 00267888
Q ss_pred HHHHHHHh----CCCCccCCCCeeee-ecCCCCCeEEEEEeee-EEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEc
Q psy1142 279 DILRALRF----LPATKHDLLSFTCD-CPLYTPGLIQFSVCGL-YEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITN 352 (442)
Q Consensus 279 ~I~~~l~~----LP~t~H~~~sf~vD-~~~~~~~~l~i~V~G~-f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~N 352 (442)
+|.+.+.. .|.|.|.++...|+ +. +....+..... +....++ ......-..+++++.. +|+|+|..
T Consensus 75 ~i~~~~~~~~~~~~~~~h~~~~~~I~~~~---gd~A~~~~~~~~~~~~~~g----~~~~~~g~y~d~~~r~-dg~WrI~~ 146 (163)
T 3b8l_A 75 GIREFFTNVFANMSHHAHYLTNFAVTGYE---GDTASMRAYVIGMGVGKDG----RAVTVNGRYFFEVRRT-EKGWKATR 146 (163)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEEEEEEC---SSEEEEEEEEEEEEEETTS----CEEEEEEEEEEEEEEE-TTEEEEEE
T ss_pred HHHHHHHHhhccCCceEEEecCEEEEEeC---CCEEEEEEEEEEEEEcCCC----CeEEEEEEEEEEEEEe-CCEEEEEE
Confidence 88887764 35778887775565 42 22221111111 1111011 1112234456666665 46799999
Q ss_pred ceeEee
Q psy1142 353 DQLFIT 358 (442)
Q Consensus 353 D~l~ir 358 (442)
-.+.+.
T Consensus 147 r~~~~~ 152 (163)
T 3b8l_A 147 YTMDFL 152 (163)
T ss_dssp EEEEES
T ss_pred EEEEEE
Confidence 887765
No 183
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.10 E-value=0.015 Score=53.07 Aligned_cols=73 Identities=25% Similarity=0.277 Sum_probs=52.3
Q ss_pred HHHHhcCCCCccEEeCCCC-CCCCCCCchhhhh---ccCCCcEEEcCCCCCCCchhh---hhcCCCCCCCeEEecCCCCC
Q psy1142 76 CNIINENLPDLFALNLSEN-KLYYPESLISLAK---VIPRVKILYLAHNNIKDLATI---RTLESLSNLEELRLEKNPWT 148 (442)
Q Consensus 76 l~i~~~~~~~L~~L~Ls~N-~l~~l~~l~~l~~---~~p~L~~L~Ls~N~I~~~~~L---~~l~~l~~L~eL~L~gNPl~ 148 (442)
+..+-.+-+.|++|+|++| +|.+ .+...+++ .-..|+.|+|++|+|.+.... +.|+.-+.|++|+|.+|.|.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd-~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSK-ERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCH-HHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHhcCCCccEEECCCCCCCCH-HHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3333366789999999986 8865 33333332 456899999999999876532 23444458999999999998
Q ss_pred C
Q psy1142 149 E 149 (442)
Q Consensus 149 ~ 149 (442)
.
T Consensus 112 ~ 112 (197)
T 1pgv_A 112 P 112 (197)
T ss_dssp H
T ss_pred H
Confidence 6
No 184
>2rfr_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.16A {Novosphingobium aromaticivorans} SCOP: d.17.4.28
Probab=94.83 E-value=0.14 Score=43.64 Aligned_cols=121 Identities=14% Similarity=0.128 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHH
Q psy1142 203 ARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILR 282 (442)
Q Consensus 203 ~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~ 282 (442)
.+..+.+++..|+..+|.+|-..+..+|++++.|.. +. . . ...|+++|.+
T Consensus 17 d~~~I~~l~~~y~~a~D~~d~~~~~~lf~~Da~~~~--~~--g---~-----------------------~~~G~~~i~~ 66 (155)
T 2rfr_A 17 DREEIRELIARYGPLADSGDAEALSELWVEDGEYAV--VG--F---A-----------------------TAKGRAAIAA 66 (155)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEE--TT--S---C-----------------------CEESHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHhhcCCceEEEc--CC--C---c-----------------------cccCHHHHHH
Confidence 356788999999999999899999999999999752 11 0 0 1378999999
Q ss_pred HHHhC-------CCCccCCCCeeeeecCCCCCeEEEEEeeeEEE--ecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcc
Q psy1142 283 ALRFL-------PATKHDLLSFTCDCPLYTPGLIQFSVCGLYEE--ITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITND 353 (442)
Q Consensus 283 ~l~~L-------P~t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e--~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND 353 (442)
.+... +.+.|.++...|++.. ... +|+..+.- ...+ . ....+.=..++.++.. +|+|+|..=
T Consensus 67 ~~~~~~~~~~~~~~~~h~~~~~~i~~~g---d~A--~~~~~~~~~~~~~~--~-~~~~~~g~y~d~~~r~-~g~Wri~~r 137 (155)
T 2rfr_A 67 LIDGQTHRALMADGCAHFLGPATVTVEG---DTA--TARCHSVVFRCVSG--T-FGSHRVSANRWTFRRT-PAGWRAVRR 137 (155)
T ss_dssp HHHSHHHHHHHHHCEEEEECCCEEEEET---TEE--EEEEEEEEEEEETT--E-EEEEEEEEEEEEEEEE-TTEEEEEEE
T ss_pred HHHhccccccCCCceeEeCCCeEEEEeC---CEE--EEEEEEEEEEEcCC--C-ceEEEeeeeEEEEEEC-CCEEEEEEE
Confidence 88765 3578988876676532 222 22222221 1011 0 0011111123566655 467999997
Q ss_pred eeEeecCCh
Q psy1142 354 QLFITSATP 362 (442)
Q Consensus 354 ~l~ir~~s~ 362 (442)
.+.+...++
T Consensus 138 ~~~~~~~~~ 146 (155)
T 2rfr_A 138 ENALLDGSA 146 (155)
T ss_dssp EEEESSSCH
T ss_pred EEEecCCCh
Confidence 777765443
No 185
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=94.81 E-value=0.024 Score=55.60 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=46.7
Q ss_pred cEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 87 FALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 87 ~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
++++-++|+|+.++. . -.++|+.|+|++|+|+.+.. +.+.++++|++|+|++|.+.+
T Consensus 12 ~~v~C~~~~Lt~iP~--~---l~~~l~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~Ls~N~i~~ 68 (350)
T 4ay9_X 12 RVFLCQESKVTEIPS--D---LPRNAIELRFVLTKLRVIQK-GAFSGFGDLEKIEISQNDVLE 68 (350)
T ss_dssp TEEEEESTTCCSCCT--T---CCTTCSEEEEESCCCSEECT-TSSTTCTTCCEEEEECCTTCC
T ss_pred CEEEecCCCCCccCc--C---cCCCCCEEEccCCcCCCcCH-HHHcCCCCCCEEECcCCCCCC
Confidence 568889999998863 1 24689999999999997763 457788899999999999865
No 186
>2gxf_A Hypothetical protein YYBH; alpha-beta protein., structural genomics, PSI, protein structure initiative; HET: MES; 3.10A {Bacillus subtilis} SCOP: d.17.4.22
Probab=94.69 E-value=0.11 Score=43.72 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHH
Q psy1142 205 DILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRAL 284 (442)
Q Consensus 205 ~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l 284 (442)
..+.+.+..|+..++.+|-..+..+|++++.|. .. |+. ...|+++|.+.+
T Consensus 3 ~~I~~l~~~~~~A~~~~D~d~~~~lfa~Dav~~--~~--~g~--------------------------~~~G~~aI~~~~ 52 (142)
T 2gxf_A 3 QQLKDIISACDLAIQNEDFDTLMNYYSEDAVLV--VK--PGM--------------------------IARGKEEIKKAF 52 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHTTSEEEEEEEE--CS--SSC--------------------------EEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhcCCCEEEE--cC--CCC--------------------------cccCHHHHHHHH
Confidence 356788999999999989999999999999873 11 111 278999999999
Q ss_pred HhCCC
Q psy1142 285 RFLPA 289 (442)
Q Consensus 285 ~~LP~ 289 (442)
..+..
T Consensus 53 ~~~~~ 57 (142)
T 2gxf_A 53 ITIAN 57 (142)
T ss_dssp HHTTS
T ss_pred HHHHH
Confidence 97654
No 187
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=94.51 E-value=0.066 Score=39.55 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=34.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHh
Q psy1142 393 NMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQ 429 (442)
Q Consensus 393 ~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 429 (442)
++|.++..+||-...=|.+-|++++||+++|+..-.+
T Consensus 11 ~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~ 47 (64)
T 2cp9_A 11 ELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHK 47 (64)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5899999999999999999999999999999988765
No 188
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=94.06 E-value=0.031 Score=54.24 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=59.0
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCC-eEEecCCCCCCcCCCchhhHH
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE-ELRLEKNPWTECFNEQDAYTS 159 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~-eL~L~gNPl~~~~~~~~~y~~ 159 (442)
..+++|++|+|++|+|+.+..-. -..+.+|+.|+|.+| |+.+.+ ..+.++.+|+ +|.|.+ .+... . .
T Consensus 223 ~~~~~L~~l~L~~n~i~~I~~~a--F~~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l~l~~-~l~~I----~---~ 290 (329)
T 3sb4_A 223 DYMPNLVSLDISKTNATTIPDFT--FAQKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTLELPA-SVTAI----E---F 290 (329)
T ss_dssp HHCTTCCEEECTTBCCCEECTTT--TTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEEECT-TCCEE----C---T
T ss_pred HhcCCCeEEECCCCCcceecHhh--hhCCCCCCEEECCcc-cceehH-HHhhCChhccEEEEEcc-cceEE----c---h
Confidence 34789999999999999886421 126889999999998 777664 4678888899 999987 55441 1 1
Q ss_pred HHHhhCCcccccC
Q psy1142 160 EVRKIFPKLLKLD 172 (442)
Q Consensus 160 ~i~~~fP~L~~LD 172 (442)
..+..+++|+.|+
T Consensus 291 ~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 291 GAFMGCDNLRYVL 303 (329)
T ss_dssp TTTTTCTTEEEEE
T ss_pred hhhhCCccCCEEE
Confidence 3455677777775
No 189
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.05 E-value=0.1 Score=42.26 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHh
Q psy1142 389 LIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQ 429 (442)
Q Consensus 389 ~~q~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 429 (442)
+.-++.|..+.++||...+=|..-|++++||.++|+....+
T Consensus 37 ~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 37 ADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred ccHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34467899999999999999999999999999999987764
No 190
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.83 E-value=0.06 Score=45.40 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=31.8
Q ss_pred CCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCC
Q psy1142 84 PDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIK 123 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~ 123 (442)
++|+.|+|++|+|+.|..- .-..+++|+.|+|++|.+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~--~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPG--LLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTT--TGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChh--hhhhccccCEEEecCCCee
Confidence 4699999999999999741 2237889999999999985
No 191
>2ux0_A Calcium-calmodulin dependent protein kinase (CAM II gamma; transferase, oligomerisation DOM serine- threonine kinase, ATP-binding; 2.46A {Homo sapiens} SCOP: d.17.4.7 PDB: 2w2c_A 1hkx_A*
Probab=93.81 E-value=0.81 Score=38.18 Aligned_cols=124 Identities=6% Similarity=-0.062 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHH
Q psy1142 204 RDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRA 283 (442)
Q Consensus 204 ~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~ 283 (442)
.+.+.+.+++|+..+..+|-..+..+|++++.|- +..+. .....|.+.|...
T Consensus 12 ~~~I~~l~~~~~~A~~~~D~~~~~~l~a~d~~~~---~~~~~-------------------------g~~~~G~~~~r~~ 63 (143)
T 2ux0_A 12 KQEIIKITEQLIEAINNGDFEAYTKICDPGLTSF---EPEAL-------------------------GNLVEGMDFHKFY 63 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEE---CGGGT-------------------------TCEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHhcCCCcEEE---eccCC-------------------------CcEEEcHHHHHHH
Confidence 4568899999999999999999999999997762 21000 0135799999999
Q ss_pred HHhC-CCCccCCCCeeee--ecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeEeec
Q psy1142 284 LRFL-PATKHDLLSFTCD--CPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITS 359 (442)
Q Consensus 284 l~~L-P~t~H~~~sf~vD--~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~ir~ 359 (442)
|..+ .+....+.--..| +....+...+++. +.+....++ .. .........|+|+... +|+|+|+.++...-+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~v~~~gd~aav~~~-~~~~~~~~~-~g-~~~~~~~r~T~v~~k~-~g~Wkivh~H~S~~~ 138 (143)
T 2ux0_A 64 FENLLSKNSKPIHTTILNPHVHVIGEDAACIAY-IRLTQYIDG-QG-RPRTSQSEETRVWHRR-DGKWLNVHYHCSGAP 138 (143)
T ss_dssp HHHTTTTCCSCEEEEEEEEEEEECSTTEEEEEE-EEEEEEECT-TS-CEEEEEEEEEEEEEEE-TTEEEEEEEEEECCC
T ss_pred HHhhhhcCCCceeEEEeCCEEEEecCcEEEEEE-eEeeeeecC-CC-CeeeeeEEEEEEEEEE-CCEEEEEEEeeCCCC
Confidence 8875 3221111101123 3333333332222 122221111 01 1113345677777765 468999999887543
No 192
>2rgq_A Domain of unknown function with A cystatin-like F; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.80A {Nostoc punctiforme} SCOP: d.17.4.25
Probab=93.65 E-value=0.61 Score=39.26 Aligned_cols=119 Identities=6% Similarity=0.041 Sum_probs=75.4
Q ss_pred hhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHH
Q psy1142 201 PEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADI 280 (442)
Q Consensus 201 ~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I 280 (442)
.+.+..+.+|+.+|...+|.++-..+..+|++++.|.+.. . ...|+++|
T Consensus 6 ~~d~~~I~~l~~rya~~lD~~d~~~~~~lft~Da~~~~~~-------g------------------------~~~g~~~i 54 (144)
T 2rgq_A 6 ALDKLEIMELAARFEMSLDKEDVENYLATFASDGALQGFW-------G------------------------IAKGKEEL 54 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEETT-------E------------------------EEESHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHhhccCcEEEEcCC-------C------------------------CCCCHHHH
Confidence 4456789999999999999988899999999999985210 0 13688888
Q ss_pred HHHHHh----CC-CCccCCCCeeeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEccee
Q psy1142 281 LRALRF----LP-ATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQL 355 (442)
Q Consensus 281 ~~~l~~----LP-~t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l 355 (442)
.+.+.. .| .|.|-++...|++.. + ..++.+.+.-. .. .. .....+-..+..++.. +|+|+|..-.+
T Consensus 55 ~~~~~~~~~~~~~~t~H~i~n~~i~~~~--d---~a~~~~~~~~~-~~-~~-~~~~~~g~y~d~~~r~-dg~Wri~~r~~ 125 (144)
T 2rgq_A 55 RQGFYAMLDTFARGKRHCSSNAIIQGNY--D---EATMESYLTVV-NR-ED-LNRAGSAFVKDQVRKI-NGKWYLILRQI 125 (144)
T ss_dssp HHHHHHHHHHTTTTEEEEEEEEEEEECS--S---EEEEEEEEEEE-ES-SS-SCEEEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred HHHHHHHHhhCCCCcEEecCCeEEEEeC--C---EEEEEEEEEEE-Ee-cC-CeEEEEEEEEEEEEEE-CCEEEEEEEEE
Confidence 887753 33 588988876666542 2 23334444322 11 00 1122223344555554 45799999777
Q ss_pred Eeec
Q psy1142 356 FITS 359 (442)
Q Consensus 356 ~ir~ 359 (442)
.+..
T Consensus 126 ~~d~ 129 (144)
T 2rgq_A 126 EVDP 129 (144)
T ss_dssp EECT
T ss_pred EecC
Confidence 6653
No 193
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=93.31 E-value=0.12 Score=33.92 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHH
Q psy1142 392 QNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIF 427 (442)
Q Consensus 392 ~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F 427 (442)
++.|.++... |...+-+.+.|..++||.++|+..+
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4578888888 9999999999999999999998753
No 194
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=93.20 E-value=0.068 Score=53.08 Aligned_cols=40 Identities=18% Similarity=0.500 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHhh
Q psy1142 391 KQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQL 430 (442)
Q Consensus 391 q~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l 430 (442)
-++-+.+|.+.||=+...|+..|+|++||+++|+..|-+.
T Consensus 45 ~~~~~~~f~~~~~~~~~~~~~~l~~~~w~~~~~~~~~~~~ 84 (362)
T 4gew_A 45 DEQKLHEFAIITATDEAFAQSILQDVDWDLKKALDVFYGS 84 (362)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHTTSSSSCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHhCCcHHHHHHHHhhcCchHHHHHHHHcCC
Confidence 3458899999999999999999999999999999999853
No 195
>3f7s_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; 2.11A {Pseudomonas putida KT2440}
Probab=93.03 E-value=0.89 Score=37.85 Aligned_cols=117 Identities=12% Similarity=0.121 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHH
Q psy1142 203 ARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILR 282 (442)
Q Consensus 203 ~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~ 282 (442)
.++.+.+.+++|+..++.+|-..+..+|++++++ ++..+ . ....|+++|.+
T Consensus 6 ~~~~I~~l~~~~~~A~~~~D~~~~~~l~a~D~v~---~~~~~----~----------------------~~~~G~~air~ 56 (142)
T 3f7s_A 6 AESEIRQLIERWMQAVRDRDIPGIIAPYADDIVA---FDAIQ----A----------------------LQFKGKSAYTA 56 (142)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEE---ECSSS----S----------------------SCEESHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHhhcCCCEEE---ecCCC----C----------------------ccccCHHHHHH
Confidence 4567889999999999999999999999999875 22110 0 01468888888
Q ss_pred HHH----hCCCC-ccCCCCeeeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeEe
Q psy1142 283 ALR----FLPAT-KHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFI 357 (442)
Q Consensus 283 ~l~----~LP~t-~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~i 357 (442)
.|. ..|.. .+.+... .+... +... .++|...-.... . .+......-|+++... +|+|+|+.++..+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~--~v~~~-gd~A--~~~~~~~~~~~~--~-~g~~~~~r~T~v~~r~-~g~W~ivh~H~S~ 127 (142)
T 3f7s_A 57 HWEMCMGMCTGPMVFELAQL--TVHAA-GDLA--LAHWLNRCGPGD--D-ESQCGFMRATVGYRRQ-GGQWQVIHEHWSA 127 (142)
T ss_dssp HHHHHHHTCCSCEEEEEEEE--EEEEE-TTEE--EEEEEEEEEESS--C-GGGCEEEEEEEEEEEE-TTEEEEEEEEEEC
T ss_pred HHHHHHHhCCCceEEEEeee--EEEEc-CCEE--EEEEEEEEeeec--C-CCcceeeEEEEEEEEe-CCEEEEEEEeecc
Confidence 764 34532 2333221 12112 2222 234433211010 0 1122223345566655 4679999998876
No 196
>3a76_A Gamma-hexachlorocyclohexane dehydrochlorinase; barrel fold, lyase, detoxification; HET: SPD; 2.25A {Sphingomonas paucimobilis}
Probab=92.78 E-value=0.2 Score=44.20 Aligned_cols=120 Identities=11% Similarity=0.113 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHH
Q psy1142 203 ARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILR 282 (442)
Q Consensus 203 ~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~ 282 (442)
.+..+.+++.+|...+|.+|-..+..+|++++.|.+ +. +. -+.|+++|.+
T Consensus 29 d~~~I~~ll~ry~~alD~~d~d~~~~lfteDa~~~~--~~-------~g---------------------~~~G~~~i~~ 78 (176)
T 3a76_A 29 SRAAIQDLYSDKLIAVDKRQEGRLASIWWDDAEWTI--EG-------IG---------------------TYKGPEGALD 78 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEE--TT-------TE---------------------EEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHhhccCCeEEEc--CC-------Cc---------------------cccCHHHHHH
Confidence 356788999999999999888999999999999852 11 00 1678889988
Q ss_pred HH-H----hCCCCccCCCCeeeeecCCCCCeEEEEEeeeEEE-ecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeE
Q psy1142 283 AL-R----FLPATKHDLLSFTCDCPLYTPGLIQFSVCGLYEE-ITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLF 356 (442)
Q Consensus 283 ~l-~----~LP~t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e-~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~ 356 (442)
.+ . ..|.|.|.++...|++.. +....+.....+.. ...+ . ......-..+..++.. +|+|+|..-.+.
T Consensus 79 ~~~~~~~~~~~~t~H~i~n~~I~~~g--~d~A~~~~~~~~~~~~~~~--~-~~~~~~gry~d~l~r~-dg~WrI~~r~~~ 152 (176)
T 3a76_A 79 LANNVLWPMFHECIHYGTNLRLEFVS--ADKVNGIGDVLLLGNLVEG--N-QSILIAAVFTDEYERR-DGVWKFSKRNAC 152 (176)
T ss_dssp HHHHTHHHHEEEEEEEEEEEEEEESS--SSEEEEEEEEEEEEEETGG--G-EEEEEEEEEEEEEEEE-TTEEEEEEEEEE
T ss_pred HHHHhhhcccCceEEecCCeEEEEcC--CCeEEEEEEEEEEEEecCC--C-ceEEEEEEEEEEEEEE-CCEEEEEEEEEE
Confidence 88 4 356889988776666533 12222211112211 1111 0 1112222334455554 467999998776
Q ss_pred ee
Q psy1142 357 IT 358 (442)
Q Consensus 357 ir 358 (442)
+.
T Consensus 153 ~~ 154 (176)
T 3a76_A 153 TN 154 (176)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 197
>3ef8_A Putative scyalone dehydratase; YP_496742.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE PG4; 1.50A {Novosphingobium aromaticivorans DSM12444} SCOP: d.17.4.28
Probab=92.37 E-value=0.34 Score=41.32 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHH
Q psy1142 203 ARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILR 282 (442)
Q Consensus 203 ~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~ 282 (442)
.+..+.+++..|...+|.+|-..+..+|++++.|.+.- . . -..|+++|.+
T Consensus 9 d~~~I~~l~~ry~~~~D~~d~~~~~~lFt~D~~~~~~~--~----~------------------------~~~G~~~i~~ 58 (150)
T 3ef8_A 9 EMRAIERMMFDYSYHLDMNHPEELAALFVEDCEVSYAP--N----F------------------------GATGRDAYKK 58 (150)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEET--T----E------------------------EEESHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHhhccCceEEEccC--C----C------------------------CCCCHHHHHH
Confidence 34578899999999999989999999999999976321 0 0 1578888888
Q ss_pred HHHhC----CCCccCCCCeeeeecC
Q psy1142 283 ALRFL----PATKHDLLSFTCDCPL 303 (442)
Q Consensus 283 ~l~~L----P~t~H~~~sf~vD~~~ 303 (442)
.+..+ +.|.|-++...|++..
T Consensus 59 ~~~~~~~~~~~~~H~~~n~~I~~~g 83 (150)
T 3ef8_A 59 TLEGIGTFFRGTSHHNSNICIDFVS 83 (150)
T ss_dssp HTTTHHHHEEEEEEEEEEEEEEEEE
T ss_pred HHHHhhcccCceEEecCCEEEEEcC
Confidence 87654 5788988876676643
No 198
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=92.31 E-value=0.068 Score=51.73 Aligned_cols=64 Identities=16% Similarity=0.118 Sum_probs=50.7
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCc-EEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVK-ILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~-~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
..+.+|++|+|++| |+.+..-. -..+++|+ .|+|.+ .|+.+++ ..+.++++|++|.|.+|.+..
T Consensus 247 ~~~~~L~~l~l~~n-i~~I~~~a--F~~~~~L~~~l~l~~-~l~~I~~-~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 247 AQKKYLLKIKLPHN-LKTIGQRV--FSNCGRLAGTLELPA-SVTAIEF-GAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp TTCTTCCEEECCTT-CCEECTTT--TTTCTTCCEEEEECT-TCCEECT-TTTTTCTTEEEEEECSSCCCE
T ss_pred hCCCCCCEEECCcc-cceehHHH--hhCChhccEEEEEcc-cceEEch-hhhhCCccCCEEEeCCCccCc
Confidence 34678999999998 87775421 12688999 999998 7777664 567889999999999999976
No 199
>3rob_A Uncharacterized conserved protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.48A {Planctomyces limnophilus}
Probab=92.08 E-value=0.7 Score=39.16 Aligned_cols=121 Identities=12% Similarity=0.037 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHH
Q psy1142 204 RDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRA 283 (442)
Q Consensus 204 ~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~ 283 (442)
+..+.+.++.|+..+..+|-..|..+|+++++|. ... . + ..|+++|.+.
T Consensus 16 e~aI~~l~~~~~~A~~~gD~~~l~al~a~D~v~~---~~g--~--~------------------------~~Gr~ai~a~ 64 (139)
T 3rob_A 16 ELAIRTVQYRWLEATRKFDRQVLSSLMTDDVVFL---TPG--R--L------------------------PFGKEEFLAA 64 (139)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEE---CTT--S--C------------------------CBCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHccCcEEEE---CCC--C--C------------------------ccCHHHHHHH
Confidence 4678899999999999999999999999999973 211 0 0 2389999988
Q ss_pred HHhCCC-CccCCCCeeeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeEee
Q psy1142 284 LRFLPA-TKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFIT 358 (442)
Q Consensus 284 l~~LP~-t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~ir 358 (442)
|...-+ ..+...--..++... +.. -.++|.+.........+....++...+++++...+|.|+|+-|.-.+.
T Consensus 65 ~~~~~~~~~~~~~~~~~~i~v~-GD~--A~~~~~~~~~~t~~~~g~~~~~~g~~~~v~rK~~dG~W~i~~d~~~~~ 137 (139)
T 3rob_A 65 CEQNDQRVIIEASATFEEIVIV-EPM--AYTRTHLHIKVTPRSGGAVRELAGHAMSIFRRSMFGEWQLARDANLVV 137 (139)
T ss_dssp HHHHHHHEEEEEEEEEEEEEEE-TTE--EEEEEEEEEEEEETTSCCCEEEEEEEEEEEEECTTSCEEEEEEEECCE
T ss_pred HHHHHHhcCCCCceEEEEEEEc-CCe--EEEEEEEEEEEecCCCCceeEeeccEEEEEEECCCCcEEEEEEhhhcc
Confidence 754211 111111011233222 222 234555553211000112334566688899875577899998875543
No 200
>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}
Probab=92.05 E-value=1.1 Score=36.90 Aligned_cols=111 Identities=14% Similarity=0.074 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHH
Q psy1142 203 ARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILR 282 (442)
Q Consensus 203 ~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~ 282 (442)
-+..+.+-|+.||..+|.+|-..|..+||++|.+-. +... .+. ....++-++
T Consensus 7 d~~aI~~~l~~Y~~g~~~~D~~~l~~~FhpdA~~~~-~~~g-----~~~----------------------~~~~~~~~~ 58 (120)
T 3fka_A 7 HIAALTALVETYVMAMTRGDRPALERIFFGKASEVG-HYEG-----ELL----------------------WNSRDAFIA 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEEE-EETT-----EEE----------------------EEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHhhCCCCeEEEE-ecCC-----cEE----------------------EcCHHHHHh
Confidence 345677889999999999899999999999998632 2111 100 011122222
Q ss_pred HHHhCCCCcc---CCCCeeeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeEee
Q psy1142 283 ALRFLPATKH---DLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFIT 358 (442)
Q Consensus 283 ~l~~LP~t~H---~~~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~ir 358 (442)
...-|.+.| ......+|+.. +.-.+.|. +. . ..+.|.-.|.|... +|+|.|+|=.+++|
T Consensus 59 -v~~~p~~~~~~~~~~i~~I~i~g---d~A~a~v~--~~-~---------~~~~f~D~~~L~k~-dg~WkIv~K~~~~~ 120 (120)
T 3fka_A 59 -MCEDAADAETDPFWAISSVSVQG---DIAMLHVE--ND-W---------AGMRFDDFLTVLLH-EGSWRIVSKVYRIR 120 (120)
T ss_dssp -HHHHHCCSSCCCCEEEEEEEEET---TEEEEEEE--EE-E---------TTEEEEEEEEEEEE-TTEEEEEEEEEEEC
T ss_pred -hcCCccCCCCCceEEEEEEEEEC---CEEEEEEE--EE-c---------CCCceEEEEEEEEe-CCEEEEEEEEEEcC
Confidence 223355544 22223355533 23222232 21 1 12569999999987 57899999999986
No 201
>2rcd_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.32A {Pectobacterium atrosepticum SCRI1043} SCOP: d.17.4.18
Probab=91.38 E-value=3.3 Score=33.85 Aligned_cols=118 Identities=13% Similarity=0.062 Sum_probs=68.6
Q ss_pred ChhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHH
Q psy1142 200 HPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKAD 279 (442)
Q Consensus 200 ~~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~ 279 (442)
.++....+.+-+..|...++.+|-..|..+|++++....... . ....|.++
T Consensus 9 ~~~~~~ei~~~~~~y~~A~~~~D~~~l~~lf~~d~~~~~~~~-~----------------------------~~~~G~~~ 59 (129)
T 2rcd_A 9 QADVLADVTAAFYRYEKALTGNDVAVLDELFWHDEKTVRYGA-G----------------------------ENLYGIEE 59 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHBCCSTTCEEEET-T----------------------------EEEESHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCHHHHHHhccCCCCEEEECC-C----------------------------CccCCHHH
Confidence 455666788888999999999899999999999975432221 1 12679999
Q ss_pred HHHHHHhCCCCccCCCCeeeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeEe
Q psy1142 280 ILRALRFLPATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFI 357 (442)
Q Consensus 280 I~~~l~~LP~t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~i 357 (442)
|.++-..+|.......--.+.+....+... .+++.|.-. + . .+....|++++..+ |+|+|+..+...
T Consensus 60 i~~~~~~~~~~~~~~~~~~~~~~~~~~d~A--~~~~~~~~~--~----~--~~~g~~t~v~~r~~-~gWrIv~~H~S~ 126 (129)
T 2rcd_A 60 IRAFRLARPSAGLDRALRNTVITTYGHDMA--VASTEFTRT--G----S--TKIGRQMQTWVKMP-EGWRIVAAHVSL 126 (129)
T ss_dssp HHHHHHHSCCTTCCCEEEEEEEEEBTTSEE--EEEEEEECS--S----C--CSCEEEEEEEEEET-TEEEEEEEEEEE
T ss_pred HHHHHHhcCCCCCceEEEEEEEEEecCcEE--EEEEEEEEc--C----C--CCceeEEEEEEECC-CcEEEEEEecCC
Confidence 999334566431111100122222333222 244455421 1 0 12233466666653 579999988753
No 202
>3er7_A Uncharacterized NTF2-like protein; YP_001812677.1, NTF2-like protein of unknown function, struc genomics; HET: MSE; 1.50A {Exiguobacterium sibiricum 255-15} SCOP: d.17.4.24
Probab=90.66 E-value=0.44 Score=40.19 Aligned_cols=105 Identities=19% Similarity=0.243 Sum_probs=63.5
Q ss_pred HHHHHhhcccc-----cChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHH
Q psy1142 210 FLEQYFALFDT-----ESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRAL 284 (442)
Q Consensus 210 Fl~~yf~~~D~-----~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l 284 (442)
=|++||..+|. ++-..|..+|++++++ ..+.. ...|+++|.+++
T Consensus 7 ~v~ry~~~~d~~~~d~~d~~~l~~Lfa~Dav~--~~~~~-----------------------------~~~G~~ai~~F~ 55 (131)
T 3er7_A 7 TLDRYFDLFDASRTDEKAFDDLISLFSDEITF--VLNGQ-----------------------------EQHGIDAWKQFV 55 (131)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHTEEEEEEE--EETTE-----------------------------EEESHHHHHHHH
T ss_pred HHHHHHHHHhhccCCccCHHHHHHHhCCCeEe--cCCCC-----------------------------CcCChHHHHHHH
Confidence 37899999983 3467788899999998 33211 268999999998
Q ss_pred Hh----CCCCccCCCCeeeeecCCCC--CeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCC---ceEEEccee
Q psy1142 285 RF----LPATKHDLLSFTCDCPLYTP--GLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGG---GFAITNDQL 355 (442)
Q Consensus 285 ~~----LP~t~H~~~sf~vD~~~~~~--~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~---~~~I~ND~l 355 (442)
.. .|.++|.....+ + ...+ ..+-.+++|..+ .+....|.=+-+..-..+| .+.++.|.|
T Consensus 56 ~~~~~a~~~~~~~~~~~v--~-~~~gd~~~~~w~~~g~~~---------~G~~~~~~g~dv~~fd~dGkI~~~~~~~d~~ 123 (131)
T 3er7_A 56 RMVFTANQDIKHMYAGWV--P-SETGDTMETRWAVCGKSA---------DGSVFTQDGTDIARLNADGKIVYLANVPDDT 123 (131)
T ss_dssp HHHHHHEEEEEEEECCCE--E-CSSTTCEEEEEEEEEEET---------TSCEEEEEEEEEEEECTTSCEEEEEEEECCC
T ss_pred HHHHhhCcCceEEEEEEE--E-ecCCCEEEEEEEEEEEEC---------CCCEEEEeeeEEEEEcCCCcEEEEEEccChH
Confidence 75 466677544311 0 1112 134445555422 2345666666666666445 366777766
Q ss_pred Ee
Q psy1142 356 FI 357 (442)
Q Consensus 356 ~i 357 (442)
-+
T Consensus 124 ~~ 125 (131)
T 3er7_A 124 AM 125 (131)
T ss_dssp --
T ss_pred HH
Confidence 54
No 203
>3soy_A NTF2-like superfamily protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Salmonella enterica subsp}
Probab=90.60 E-value=0.5 Score=40.26 Aligned_cols=36 Identities=8% Similarity=0.076 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHhhcccccChhhHHhccccCceEE
Q psy1142 202 EARDILRAFLEQYFALFDTESRAGLIDAYHENAQYS 237 (442)
Q Consensus 202 ~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fS 237 (442)
+...-+.+-+.+|+..++..|-..|..+|.++...+
T Consensus 7 ~~~~ei~~~~~~~~~Al~~~D~~~l~~l~~~~~~~~ 42 (145)
T 3soy_A 7 TVKQEITEGINRYLYSIDKADPTLGKQLFYVSPETS 42 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTTTBCCSSSCE
T ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHHHHhCCCCeE
Confidence 455678888999999999889999999998875444
No 204
>2owp_A Hypothetical protein BXE_B1374; cystatin-like fold, DUF3225 family protein, structural genom joint center for structural genomics, JCSG; 2.00A {Burkholderia xenovorans} SCOP: d.17.4.18
Probab=90.60 E-value=5.5 Score=33.00 Aligned_cols=121 Identities=8% Similarity=0.093 Sum_probs=73.1
Q ss_pred cCChhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCH
Q psy1142 198 LCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGK 277 (442)
Q Consensus 198 ~~~~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~ 277 (442)
...++....+.+.+.+|+..+|..|-..|..+|++++.+.. ++.. ....|.
T Consensus 4 ~~~~~~~~eI~~~~~~y~~Al~~~D~~~L~~lf~~d~~~v~-~~~g----------------------------~~l~G~ 54 (129)
T 2owp_A 4 VNQPDIVAQVQAAFVEYERALVENDIEAMNALFWHTPETVR-YGIA----------------------------EVQHGG 54 (129)
T ss_dssp BSCHHHHHHHHHHHHHHHHHHHHTCHHHHHHTBCCSTTCEE-ECSS----------------------------CEEESH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhCCHHHHHhhccCCCcEEE-eCCC----------------------------CccCCH
Confidence 34566777788999999999998899999999999986431 2211 126899
Q ss_pred HHHHHHHHhCCCC--ccCCCCeeeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEccee
Q psy1142 278 ADILRALRFLPAT--KHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQL 355 (442)
Q Consensus 278 ~~I~~~l~~LP~t--~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l 355 (442)
++|.++...++.. +|.+.. +.+....+.... ++..|.- .+ ....=.++++|+-.+. ++||+|+..+.
T Consensus 55 ~~I~a~r~~~~~~~~~~~~~~--~~i~~~g~d~A~--~~~~~~~--~~----~~~~gr~t~vw~r~~~-~~gWrIv~~H~ 123 (129)
T 2owp_A 55 EAIRAWRERCEPVPKSRKLHR--TVVTTFGTDFAT--VSTEFTS--DA----TPLLGRQMQTWARLSP-ADGWKIVAAHV 123 (129)
T ss_dssp HHHHHHHHHSCCCCTTCEEEE--EEEEEETTTEEE--EEEEEEE--TT----EEEEEEEEEEEEECST-TTCEEEEEEEE
T ss_pred HHHHHHHHhcCCCCCceeecc--cEEEEecCCEEE--EEEEEEE--CC----CCcceEEEEEEEECCC-CCCEEEEEeee
Confidence 9999988877653 454433 223333322222 2334442 22 1111124555544321 14699999887
Q ss_pred Eee
Q psy1142 356 FIT 358 (442)
Q Consensus 356 ~ir 358 (442)
...
T Consensus 124 S~~ 126 (129)
T 2owp_A 124 SLI 126 (129)
T ss_dssp EEE
T ss_pred cCC
Confidence 654
No 205
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=90.57 E-value=0.7 Score=35.83 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCcc
Q psy1142 393 NMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQLKAKNALPSE 439 (442)
Q Consensus 393 ~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~~~iP~e 439 (442)
+.|++|... |...+-+.+.|..++||.++|+..... ..|.||++
T Consensus 31 e~I~~Lv~M-GF~~~~A~~AL~~t~gdve~A~e~L~s--h~~~ip~~ 74 (83)
T 1veg_A 31 ESINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLAH--HGGSLPPD 74 (83)
T ss_dssp HHHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHHH--HTSSCCTT
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh--CCCCCchh
Confidence 345666655 999999999999999999999987764 45778876
No 206
>3gwr_A Putative calcium/calmodulin-dependent protein KIN II association domain; YP_315894.1; HET: MSE PG4; 2.01A {Thiobacillus denitrificans atcc 25259}
Probab=88.94 E-value=1.4 Score=37.47 Aligned_cols=118 Identities=8% Similarity=0.023 Sum_probs=67.0
Q ss_pred HHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHh
Q psy1142 207 LRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRF 286 (442)
Q Consensus 207 ~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~ 286 (442)
.++-++.||..|..+|-..+..+|.++...++.-+.. ....|+++|.+.|..
T Consensus 10 ~~~~~~af~~A~~~gD~da~~al~a~d~~v~~v~p~g----------------------------~~l~G~~ai~~~w~~ 61 (144)
T 3gwr_A 10 PEAAEDAFYAAFEARSLDDMMAVWARDDHVACIHPLA----------------------------APLNGRAAVAAGWRS 61 (144)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHBCSSSCCEEECTTC----------------------------CCEESHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHhhccCCCCEEEECCCC----------------------------CCcccHHHHHHHHHH
Confidence 3455778999999989999999999985433222210 126899999999875
Q ss_pred CCCCccCCCCeeeeecCC-CCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeEee
Q psy1142 287 LPATKHDLLSFTCDCPLY-TPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFIT 358 (442)
Q Consensus 287 LP~t~H~~~sf~vD~~~~-~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~ir 358 (442)
+=...-.+.--..|+... .+...++++...+.-..++ ... ..+--|.|.... +|+|+|+..+-...
T Consensus 62 ~f~~~~~~~i~~~~v~v~~~gd~A~v~~~e~~~~~~~~----g~~-~~~r~T~V~~r~-~g~WrivhhH~S~~ 128 (144)
T 3gwr_A 62 MFGAAGRFRLQVKAVHEIRQADHVIRIVDEFLTIGDET----APR-PAILATNVYRRE-ADGWRMVLHHASPL 128 (144)
T ss_dssp HHHHHCCEEEEEEEEEEEECSSEEEEEEEEEEEETTCS----SCC-CCEEEEEEEEEC-SSSEEEEEEEEEEC
T ss_pred HHcCCCcEEEEEEEEEEEecCCEEEEEEEEEEEecCCC----Cce-eeEEEEEEEEEE-CCEEEEEEEecCCC
Confidence 321110111111233322 2333444444444422111 112 445567777766 45799999988765
No 207
>3bb9_A Putative orphan protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: d.17.4.16
Probab=87.43 E-value=1.9 Score=36.18 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcccccChhhHHhccccCceE
Q psy1142 205 DILRAFLEQYFALFDTESRAGLIDAYHENAQY 236 (442)
Q Consensus 205 ~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~f 236 (442)
+.+.+.++.|+..++.+|-..+..+|++++++
T Consensus 30 ~~i~~~~~~~~~A~~~~D~~~l~~l~a~Da~~ 61 (148)
T 3bb9_A 30 SAAGNVVKQFHAALQMGNEAIVRQSLAANVQI 61 (148)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHhhCCCeEE
Confidence 46777889999999988999999999999875
No 208
>3b7c_A Uncharacterized protein; NTF-2 like protein, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.70A {Shewanella oneidensis} SCOP: d.17.4.16
Probab=86.39 E-value=7.2 Score=31.43 Aligned_cols=110 Identities=17% Similarity=0.196 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhhcccccChhhHHhcc--ccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHH
Q psy1142 205 DILRAFLEQYFALFDTESRAGLIDAY--HENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILR 282 (442)
Q Consensus 205 ~~~~~Fl~~yf~~~D~~~R~~L~~~Y--~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~ 282 (442)
..+.+-++.|+..|..+|-..++..| +++..|. ... .+.+|.++|.+
T Consensus 5 ~~I~~~~~~~~~A~~~~D~~~~~~~y~~~~d~~~~---~~~----------------------------~~~~G~~~i~~ 53 (122)
T 3b7c_A 5 DDIVQLLKGQEEAWNRGDLDAYMQGYWQNEQLMLI---SNG----------------------------KFRNGWDETLA 53 (122)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTBCCSTTCEEE---CSS----------------------------CEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhhcCCCCEEEE---CCC----------------------------ccccCHHHHHH
Confidence 45777788999999988999999999 7887773 110 13789999999
Q ss_pred HHHh-CCCCccCCCCe---eeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEccee
Q psy1142 283 ALRF-LPATKHDLLSF---TCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQL 355 (442)
Q Consensus 283 ~l~~-LP~t~H~~~sf---~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l 355 (442)
.+.. ++. ....... .+|+....+.. ..|+|.+.-. .. .. ....| | |+++... +|+|+|+.++-
T Consensus 54 ~~~~~f~~-~~~~~~l~~~~~~~~~~~~~~--a~v~~~~~~~-~~-~~-~~~~r-~--T~v~~k~-~g~W~Iv~~H~ 120 (122)
T 3b7c_A 54 AYKKNYPD-KESLGELKFTIKEIKMLSNYA--AMVVGRWDLK-RL-KD-TPTGV-F--TLLVEKI-DDRWVITMDHS 120 (122)
T ss_dssp HHHHHCSS-GGGSCEEEEEEEEEEEEETTE--EEEEEEEEEE-CS-SC-CCEEE-E--EEEEEEE-TTEEEEEEEEE
T ss_pred HHHHhcCC-hhhcCeeEEEEEEEEEcCCCE--EEEEEEEEEE-cc-CC-CCCcE-E--EEEEEEe-CCCEEEEEEec
Confidence 8664 543 2222221 24554333333 3456666532 11 11 11123 4 4455554 35799998874
No 209
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=86.24 E-value=1.8 Score=29.91 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHh
Q psy1142 389 LIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQ 429 (442)
Q Consensus 389 ~~q~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 429 (442)
+.-++.|+++... |...+-+...|..++||.++|+.-...
T Consensus 6 ~~~~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 6 SEYETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3445667777665 999999999999999999999977543
No 210
>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14
Probab=85.47 E-value=4.2 Score=33.29 Aligned_cols=34 Identities=12% Similarity=0.035 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhcccccChhhHHhccccCceEE
Q psy1142 204 RDILRAFLEQYFALFDTESRAGLIDAYHENAQYS 237 (442)
Q Consensus 204 ~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fS 237 (442)
+..+.+-+.+|+..+|.+|...|..+||++|.+-
T Consensus 11 ~~aI~~~~~~y~~a~~~~D~~~l~~~f~~da~~~ 44 (128)
T 3blz_A 11 YHAIVEVLSKYNEGGKKADSTIMRPAFSSQATIF 44 (128)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHhhCCCcEEE
Confidence 4577888999999999989999999999999984
No 211
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.61 E-value=1.8 Score=31.51 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHh
Q psy1142 392 QNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQ 429 (442)
Q Consensus 392 ~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 429 (442)
++.|++|... |...+.|.+.|..++||.++|+.-..+
T Consensus 10 ~~~v~~L~~M-GF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 10 EDCVTTIVSM-GFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp HHHHHHHHHH-TCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3467777764 999999999999999999999987654
No 212
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=84.37 E-value=1 Score=34.08 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHh
Q psy1142 392 QNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQ 429 (442)
Q Consensus 392 ~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 429 (442)
++.|++|.. -|...+-+...|..++||.++|+.....
T Consensus 30 ee~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 30 EEQIQKLVA-MGFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456677765 4999999999999999999999977653
No 213
>3duk_A NTF2-like protein of unknown function; structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.20A {Methylobacillus flagellatus KT} SCOP: d.17.4.0
Probab=83.64 E-value=3.4 Score=34.06 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHH
Q psy1142 203 ARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILR 282 (442)
Q Consensus 203 ~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~ 282 (442)
-+..+.+-+..||..+|.+|-..|..+||+++..- ++... ..+ .....++.++
T Consensus 10 d~~aI~~~l~~y~~g~~~~D~~~l~~~f~pda~~~-~~~~G----~~l----------------------~~~~~~e~~~ 62 (125)
T 3duk_A 10 DIDGITEVLNVYMNAAESGTGEEMSAAFHKDATIF-GYVGD----KLA----------------------FNGPIKDLYD 62 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHGGGEEEEEEEE-EEETT----EEE----------------------EEEETHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHhCCCCcEEE-EEcCC----CEE----------------------eeCCHHHHHH
Confidence 45667888999999999989999999999999873 12211 000 0011223333
Q ss_pred HHH---hCCCCccCCCCeeeeecCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeEee
Q psy1142 283 ALR---FLPATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFIT 358 (442)
Q Consensus 283 ~l~---~LP~t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~ir 358 (442)
.+. .-|..+|.+.+ +|+.. +.-.+-| .+... .-+.|.-.|.|... +|+|.|+|=.+++.
T Consensus 63 ~v~~~~p~~~~~~~I~~--I~i~g---d~A~a~v--~~~~~---------~~~~f~D~l~L~k~-dg~WkIv~K~~~~h 124 (125)
T 3duk_A 63 WHNSNGPAKNVQSRITN--IDIVG---TVAHARV--EAENW---------TNFKFSDLFLLLKL-DGKWTIVNKVFHLH 124 (125)
T ss_dssp HHHHHCCCTTCEEEEEE--EEEET---TEEEEEE--EEECS---------SSCCEEEEEEEEEE-TTEEEEEEEEEEEC
T ss_pred HHhccCCCCcccceEEE--EEEEC---CEEEEEE--EEEEc---------CCCeEEEEEEEEEe-CCEEEEEEEEEEec
Confidence 332 23455554433 45533 2221111 11101 12468999999987 56899999999875
No 214
>3dm8_A Uncharacterized protein RPA4348; siras, putative isomerase, structural genomics, PSI-2, prote structure initiative; HET: CE9; 1.80A {Rhodopseudomonas palustris} SCOP: d.17.4.20
Probab=82.90 E-value=1.7 Score=36.40 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=43.8
Q ss_pred HHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHh
Q psy1142 207 LRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRF 286 (442)
Q Consensus 207 ~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~ 286 (442)
..+|+++||..+..+|...+..+|+++..|...-+. ..-+|. .-.+|+++|.++|..
T Consensus 6 ~~~~v~~~~~a~~~gD~~~l~~l~a~Dv~~~~~g~~------~~~p~~-----------------g~~~G~~av~~~~~~ 62 (143)
T 3dm8_A 6 LWRFSRALHRALNDRQTEELATIIDDNIDWAIYGPI------DMFPFF-----------------GARQGKAAVLEVCRQ 62 (143)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHEEEEEEEEEESCT------TTCTTC-----------------EEEESHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHhcCCCeEEEecCCC------CcCCCC-----------------ccccCHHHHHHHHHH
Confidence 478899999999998999999999999998642111 000000 027899999999987
Q ss_pred CCC
Q psy1142 287 LPA 289 (442)
Q Consensus 287 LP~ 289 (442)
+..
T Consensus 63 ~~~ 65 (143)
T 3dm8_A 63 IAD 65 (143)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 215
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=82.75 E-value=1.6 Score=29.02 Aligned_cols=35 Identities=23% Similarity=0.455 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHH
Q psy1142 392 QNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIF 427 (442)
Q Consensus 392 ~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F 427 (442)
++.|.++... |...+-+.+.|..++||.++|+.-.
T Consensus 5 e~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~L 39 (43)
T 2g3q_A 5 SLAVEELSGM-GFTEEEAHNALEKCNWDLEAATNFL 39 (43)
T ss_dssp HHHHHHHHTT-TSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCcCHHHHHHHH
Confidence 4567888764 9999999999999999999998654
No 216
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=82.25 E-value=2.6 Score=29.60 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHhcCCCHHHHHHHHHh
Q psy1142 389 LIKQNMVKALSQVSGM-NLNFSEKCLNEVQWDYDQAVTIFNQ 429 (442)
Q Consensus 389 ~~q~~mv~~~~~~Tgm-n~~~s~~cL~~~~Wd~~~A~~~F~~ 429 (442)
+.-++.|.+|... |. +.+-+.+.|..++||.++|+.....
T Consensus 9 ~~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 9 VRFQQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3345566777655 77 9999999999999999999987543
No 217
>3ke7_A Putative ketosteroid isomerase; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE BCN; 1.45A {Parabacteroides distasonis atcc 8503}
Probab=81.97 E-value=16 Score=30.57 Aligned_cols=116 Identities=5% Similarity=0.061 Sum_probs=68.3
Q ss_pred ChhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHH
Q psy1142 200 HPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKAD 279 (442)
Q Consensus 200 ~~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~ 279 (442)
++...+.+..+.++-. .++|-..+..+|++++++ ++..+. .+..|.++
T Consensus 12 ~~~~~~~i~~~~~~~L---~~gD~~~~~~lyapDvt~---fDp~~~--------------------------~~~~G~~a 59 (134)
T 3ke7_A 12 NENIPEMIISLEKEAL---ASTDPMAFVELSDTDVIY---FDPSLE--------------------------TKIEGLEQ 59 (134)
T ss_dssp TSSHHHHHHHHHHHHH---HCSCTTHHHHHEEEEEEE---ECTTCS--------------------------SCEESHHH
T ss_pred hHHHHHHHHHHhHHHH---hCCCHHHHHHhcCCCEEE---EcCCCc--------------------------cccCCHHH
Confidence 4556667777777765 556899999999999886 332110 13689999
Q ss_pred HHHHHHhCCCCccCCCCee-eee--cCCCCCeEEEEEeeeEEEecCCCCCCCCCeeeEEEEEEEEeCCCCceEEEcceeE
Q psy1142 280 ILRALRFLPATKHDLLSFT-CDC--PLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLF 356 (442)
Q Consensus 280 I~~~l~~LP~t~H~~~sf~-vD~--~~~~~~~l~i~V~G~f~e~~~~~~~~~~~~r~F~RtFvl~p~~~~~~~I~ND~l~ 356 (442)
|..+|..++.. +.. .|. .|. +. .+...++ +..+.-..++ ......-|+|....++|+|.|+..+..
T Consensus 60 ~r~yf~~~~~~-~~~-~~ei~~p~V~v-~gD~A~~--~y~l~~~~~~------~~~~~r~T~V~~r~~dG~W~ivH~H~S 128 (134)
T 3ke7_A 60 LRTYYKGMQLP-PAD-HFDMIRPVVQV-AQNIAVL--TFNLDSYLSD------KVIKWNCTEVYRRNPDNQWKIIQTHWS 128 (134)
T ss_dssp HHHHHHHHCCC-CCS-EEEEEEEEEEE-ETTEEEE--EEEEEEEETT------EEEEEEEEEEEEECTTSBEEEEEEEEE
T ss_pred HHHHHHhcccC-Ccc-eEEEeCCeEEE-eCceEEE--EEEEEEeeCC------CcEEEEEEEEEEEcCCCcEEEEEEeec
Confidence 99999886644 222 221 222 22 2333322 2122211011 123456677777664678999998877
Q ss_pred ee
Q psy1142 357 IT 358 (442)
Q Consensus 357 ir 358 (442)
+.
T Consensus 129 ~~ 130 (134)
T 3ke7_A 129 YV 130 (134)
T ss_dssp ES
T ss_pred cc
Confidence 64
No 218
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=81.77 E-value=4.8 Score=30.10 Aligned_cols=48 Identities=13% Similarity=0.268 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHH-hCCCHHHHHHHHHhcCCCHHHHHHHHHhhhhcCCCCcc
Q psy1142 388 ILIKQNMVKALSQV-SGMNLNFSEKCLNEVQWDYDQAVTIFNQLKAKNALPSE 439 (442)
Q Consensus 388 ~~~q~~mv~~~~~~-Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~~~iP~e 439 (442)
.++-+++|.++... --|...|..+||+..+-|.|+++.+..+ +++||+
T Consensus 10 ~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE----~~LPp~ 58 (71)
T 2di0_A 10 GVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE----ERLAPT 58 (71)
T ss_dssp SHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT----TCCCTT
T ss_pred HHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc----cCCCHH
Confidence 45556677776554 4799999999999999999999999887 689985
No 219
>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A* 1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A* 3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A 3ov4_A* 3nm2_A
Probab=79.81 E-value=1.7 Score=34.40 Aligned_cols=55 Identities=16% Similarity=0.217 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHH
Q psy1142 206 ILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALR 285 (442)
Q Consensus 206 ~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~ 285 (442)
...+.+++||..++.+|...+..+|++++.+. .+..+ ....|+++|.+.+.
T Consensus 6 ~~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~--~~~~~---------------------------~~~~G~~~i~~~~~ 56 (125)
T 1ohp_A 6 HMTAVVQRYVAALNAGDLDGIVALFADDATVE--NPVGS---------------------------EPRSGTAAIREFYA 56 (125)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEE--SSTTS---------------------------CCEESHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHcCCCeEEE--CCCCC---------------------------CCccCHHHHHHHHH
Confidence 45677889999999889999999999998875 11100 02789999999998
Q ss_pred hCCC
Q psy1142 286 FLPA 289 (442)
Q Consensus 286 ~LP~ 289 (442)
.+..
T Consensus 57 ~~~~ 60 (125)
T 1ohp_A 57 NSLK 60 (125)
T ss_dssp HHTS
T ss_pred Hhcc
Confidence 7654
No 220
>3jum_A Phenazine biosynthesis protein A/B; chirality, drug design, medicinal CH inhibitor, biosynthetic protein; HET: AOD; 1.45A {Burkholderia SP} PDB: 3b4o_A* 3b4p_A* 3dzl_A* 3ex9_A 3cnm_A* 3jun_A* 3juo_A* 3jup_A* 3juq_A*
Probab=79.14 E-value=7.4 Score=34.68 Aligned_cols=91 Identities=14% Similarity=0.018 Sum_probs=59.7
Q ss_pred hhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHH
Q psy1142 201 PEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADI 280 (442)
Q Consensus 201 ~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I 280 (442)
.++++...+=+++|+..... |+..+..+|++++++.+ ++.+. .|- ....|+++|
T Consensus 37 ~~~~~~nr~vV~~yl~~~~~-D~~~~~eLfAeDav~e~--P~~~~---G~P--------------------~r~~GReai 90 (185)
T 3jum_A 37 VAARQHNRKIVEQYMHTRGE-ARLKRHLLFTEDGVGGL--WTTDS---GQP--------------------IAIRGREKL 90 (185)
T ss_dssp HHHHHHHHHHHHHHHHCCGG-GGGGGGGGEEEEEEEEE--SCCTT---SSC--------------------EEEESHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc-CHHHHHHhCCCCEEEEe--cCCCC---CCC--------------------ccccCHHHH
Confidence 55667777778889988888 99999999999999874 33211 110 127899999
Q ss_pred HHHHHhCCCCccCCCCe-eeeecCC-CCCeEEEEEeeeEE
Q psy1142 281 LRALRFLPATKHDLLSF-TCDCPLY-TPGLIQFSVCGLYE 318 (442)
Q Consensus 281 ~~~l~~LP~t~H~~~sf-~vD~~~~-~~~~l~i~V~G~f~ 318 (442)
.+.+..++..--+ ..| .+++... .+..+++-.+|.-+
T Consensus 91 ~~~~~~~~~~~~d-~~~~~~~v~~taDpd~VvvE~~~~Gt 129 (185)
T 3jum_A 91 GEHAVWSLQCFPD-WVWTDIQIFETQDPNWFWVECRGEGA 129 (185)
T ss_dssp HHHHHHHHHHSTT-CEEEEEEEECCSSTTEEEEEEEEEEE
T ss_pred HHHHHHHHhhCCC-CeeeEEEEEEecCCCEEEEEEEEEEE
Confidence 9998877643222 222 2344433 35566666666544
No 221
>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}
Probab=78.37 E-value=1.5 Score=37.09 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHH
Q psy1142 205 DILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRAL 284 (442)
Q Consensus 205 ~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l 284 (442)
....+.+++||..+..+|...|..+|+++++|.- +..+. -+.|+++|.++|
T Consensus 9 ~~~~~~~~~~~~a~~~~D~~~l~~l~a~D~v~~~--P~~~~---------------------------~~~G~~~v~~~~ 59 (143)
T 3mso_A 9 ANAAATLAEWHGLIARRDLSGLPRLLHPDAVFRS--PMAHK---------------------------PYAGAPVVSMIL 59 (143)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTGGGGEEEEEEEEC--SSCSS---------------------------CEESHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEEC--CCCCC---------------------------CccCHHHHHHHH
Confidence 3456778899999998899999999999999961 11000 178999999998
Q ss_pred HhC
Q psy1142 285 RFL 287 (442)
Q Consensus 285 ~~L 287 (442)
..+
T Consensus 60 ~~~ 62 (143)
T 3mso_A 60 NTV 62 (143)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 222
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=78.30 E-value=3 Score=29.14 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHhcCCCHHHHHHHH
Q psy1142 392 QNMVKALSQVSGM-NLNFSEKCLNEVQWDYDQAVTIF 427 (442)
Q Consensus 392 ~~mv~~~~~~Tgm-n~~~s~~cL~~~~Wd~~~A~~~F 427 (442)
++.|.+|... |. +.+-+.+.|..++||.++|+...
T Consensus 13 ~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L 48 (52)
T 2jy5_A 13 QQQLEQLSAM-GFLNREANLQALIATGGDINAAIERL 48 (52)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 3455666554 88 99999999999999999998754
No 223
>3en8_A Uncharacterized NTF-2 like protein; YP_553245.1, NTF-2 like protein of unknown function, structu genomics; HET: MSE PG4; 1.85A {Burkholderia xenovorans LB400} SCOP: d.17.4.20
Probab=78.04 E-value=2 Score=35.56 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=41.3
Q ss_pred HHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHhC
Q psy1142 208 RAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFL 287 (442)
Q Consensus 208 ~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~L 287 (442)
.+-+++||..|..+|-..+..+|++++.+. .+..+ ..+.|+++|.+++...
T Consensus 8 ~~~v~~~~~a~~~~D~~~l~~llaeD~v~~--~P~~~---------------------------~~~~Gr~~~~~~~~~~ 58 (128)
T 3en8_A 8 REALNAHWQASAAGDFDAEHDIYDDDAICD--YPQSG---------------------------ERILGRMNLQALRSHH 58 (128)
T ss_dssp HHHHHHHHHHHHHTCHHHHTTTEEEEEEEE--ETTTT---------------------------EEEESHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCEEEE--CCCCC---------------------------CEEECHHHHHHHHHHC
Confidence 445677777777778899999999999986 33210 1278999999999999
Q ss_pred CCC
Q psy1142 288 PAT 290 (442)
Q Consensus 288 P~t 290 (442)
|..
T Consensus 59 ~~~ 61 (128)
T 3en8_A 59 PGK 61 (128)
T ss_dssp TCS
T ss_pred CCC
Confidence 864
No 224
>3ff0_A Phenazine biosynthesis protein PHZB 2; cystatin-like fold, antibiotic biosynthesis, virulence, STRU genomics; 1.90A {Pseudomonas aeruginosa}
Probab=77.76 E-value=5.2 Score=34.97 Aligned_cols=95 Identities=14% Similarity=0.090 Sum_probs=61.4
Q ss_pred CCCCcCChhhHHHHHHHHHHHhhcccccChhhHHhccccCce---EEEEeecCCCCCcchhhhcccCcccccCCChhhhh
Q psy1142 194 QGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQ---YSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQK 270 (442)
Q Consensus 194 ~~~f~~~~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~---fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~ 270 (442)
.+.|-+..++++.-.+-+++||...+. |+..+..+|+++++ +. .+. +. +
T Consensus 8 ~~~~~~~~~~r~~Nr~vV~~~l~~~~~-D~~~~~~LfAeD~v~~~~e--~~~--G~--P--------------------- 59 (163)
T 3ff0_A 8 PQGFEDAVELRRKNRETVVKYMNTKGQ-DRLRRHELFVEDGCGGLWT--TDT--GS--P--------------------- 59 (163)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHTCCGG-GGGGGGGGEEEEEEEEESS--CSS--SS--C---------------------
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhcC-CHHHHHHhcCCcccceeeE--ECC--CC--C---------------------
Confidence 345566778888888999999988876 99999999999998 64 111 10 0
Q ss_pred hhhccCHHHHHHHHHhCCCCccCCCCeeeeecCCC-CCeEEEEEeeeE
Q psy1142 271 SLLSVGKADILRALRFLPATKHDLLSFTCDCPLYT-PGLIQFSVCGLY 317 (442)
Q Consensus 271 ~~l~~G~~~I~~~l~~LP~t~H~~~sf~vD~~~~~-~~~l~i~V~G~f 317 (442)
....|+++|.+.+..++..--+..--.+.+.... +..+++-.+|.-
T Consensus 60 -~~~~Gre~l~~~~~~~~~~~~~~~~~~~~i~~t~Dpd~vvvE~~~~g 106 (163)
T 3ff0_A 60 -IVIRGKDKLAEHAVWSLKCFPDWEWYNIKVFETDDPNHFWVECDGHG 106 (163)
T ss_dssp -EEEESHHHHHHHHHHHHHHSTTCEEEEEEEEEBSSTTEEEEEEEEEE
T ss_pred -cceecHHHHHHHHHHHHhhCCCceeeeEEEEEcCCCCEEEEEEEEEE
Confidence 1378999999998876654333221113343332 445554444433
No 225
>2a15_A Hypothetical protein RV0760C; beta-alpha-barrel, structural genomics, PSI, protein structure initiative; 1.68A {Mycobacterium tuberculosis} SCOP: d.17.4.3 PDB: 2z76_A* 2z77_A* 2z7a_A
Probab=76.75 E-value=17 Score=29.49 Aligned_cols=64 Identities=9% Similarity=0.007 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHH
Q psy1142 206 ILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALR 285 (442)
Q Consensus 206 ~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~ 285 (442)
.+.+.+++||..++.+|-..+..+|++++.|. -+..+ ..+ .... .-+.|+++|.+.|.
T Consensus 8 ~~~~~v~~~~~a~~~~D~~~~~~l~a~D~v~~--~p~~~---~~~---~~~g--------------~~~~G~~ai~~~~~ 65 (139)
T 2a15_A 8 PALIASQSSWRCVQAHDREGWLALMADDVVIE--DPIGK---SVT---NPDG--------------SGIKGKEAVGAFFD 65 (139)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEE--SSSSS---BTT---BTTS--------------SCEESHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHhcCCCEEEE--CCCCC---Ccc---CCCC--------------ceeecHHHHHHHHH
Confidence 45567889999999889999999999999885 11110 000 0000 11689999999999
Q ss_pred hCCCCc
Q psy1142 286 FLPATK 291 (442)
Q Consensus 286 ~LP~t~ 291 (442)
.+....
T Consensus 66 ~~~~~~ 71 (139)
T 2a15_A 66 THIAAN 71 (139)
T ss_dssp HHTTTT
T ss_pred Hhcccc
Confidence 876543
No 226
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=75.91 E-value=7.4 Score=29.34 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHhcCCCHHHHHHHHHh
Q psy1142 392 QNMVKALSQVSGM-NLNFSEKCLNEVQWDYDQAVTIFNQ 429 (442)
Q Consensus 392 ~~mv~~~~~~Tgm-n~~~s~~cL~~~~Wd~~~A~~~F~~ 429 (442)
++.|++|... |. +.+-..+.|..++||.++|+.....
T Consensus 30 e~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3345666655 76 6888899999999999999987654
No 227
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=75.41 E-value=4.3 Score=29.57 Aligned_cols=37 Identities=14% Similarity=0.272 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHh
Q psy1142 392 QNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQ 429 (442)
Q Consensus 392 ~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 429 (442)
++.|++|.. -|...+-|.+.|..++||.++|+.-...
T Consensus 10 ~~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 10 EKALKHITE-MGFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 345666665 4999999999999999999999976543
No 228
>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI, LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3 PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A* 1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A* 3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...
Probab=74.94 E-value=2.1 Score=34.56 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHH
Q psy1142 205 DILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRAL 284 (442)
Q Consensus 205 ~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l 284 (442)
....+.+++||..++.+|-..+..+|++++.+. .+..+ ....|+++|.+++
T Consensus 7 ~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~--~p~~~---------------------------~~~~G~~~i~~~~ 57 (131)
T 1oh0_A 7 QEVQGLMARYIELVDVGDIEAIVQMYADDATVE--DPFGQ---------------------------PPIHGREQIAAFY 57 (131)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEE--SSTTS---------------------------CCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHcCCCEEEE--cCCCC---------------------------CCcccHHHHHHHH
Confidence 345677899999999989999999999999875 11100 0278999999998
Q ss_pred HhCCC
Q psy1142 285 RFLPA 289 (442)
Q Consensus 285 ~~LP~ 289 (442)
..+..
T Consensus 58 ~~~~~ 62 (131)
T 1oh0_A 58 RQGLG 62 (131)
T ss_dssp HHHHS
T ss_pred HHHhh
Confidence 86643
No 229
>3ejv_A Uncharacterized protein with cystatin-like fold; structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.40A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.28
Probab=74.85 E-value=1.7 Score=38.43 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHH
Q psy1142 204 RDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRA 283 (442)
Q Consensus 204 ~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~ 283 (442)
+..+.+++.+|....|..|-..+..+|++++.+.+.-...... ... ....|+++|.+.
T Consensus 25 ~~~I~~l~~~y~~~~D~~d~d~~~~lFt~D~~~~~~~~~Gg~~-g~~---------------------~~~~Gr~aI~~~ 82 (179)
T 3ejv_A 25 ETIILNVLGQYTRAHDRRDPDAMAALFAPEATIEIVDAVGGAS-RSI---------------------SRLEGRDAIRVA 82 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHTTEEEEEEEEEEECGGGCC-EEE---------------------EEEESHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHhhcCCceEEEEeccCCCcC-CCc---------------------ceecCHHHHHHH
Confidence 5678899999999999988999999999999877541110000 000 127899999999
Q ss_pred HHhC-------CCCccCCCCeeeeec
Q psy1142 284 LRFL-------PATKHDLLSFTCDCP 302 (442)
Q Consensus 284 l~~L-------P~t~H~~~sf~vD~~ 302 (442)
+... |.|.|-++...+++-
T Consensus 83 ~~~~~~~~~~~~~t~H~~~n~~I~vd 108 (179)
T 3ejv_A 83 VRQMMAPHGYRAWSQNVVNAPIIVIE 108 (179)
T ss_dssp HHHSSCCCCTTEEEEEEEEEEEEEEE
T ss_pred HHHhhcccccccceEEEcCCCEEEEc
Confidence 8753 346788887777764
No 230
>3cnx_A Uncharacterized protein; putative dehydratase, NTF2-like protein, structural genomics center for structural genomics, JCSG; HET: MSE PGE PG6; 2.10A {Streptomyces avermitilis} SCOP: d.17.4.17
Probab=74.27 E-value=8.9 Score=33.59 Aligned_cols=32 Identities=6% Similarity=0.078 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhcccccChhhHHhccccCce
Q psy1142 204 RDILRAFLEQYFALFDTESRAGLIDAYHENAQ 235 (442)
Q Consensus 204 ~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~ 235 (442)
...+.+-+..||..|..+|-..|..+|.+++.
T Consensus 11 ~~~I~~~~~~~~~A~~~gD~~~l~alwa~d~~ 42 (170)
T 3cnx_A 11 VEQVGLANTAFYEAMERGDFETLSSLWLTPAD 42 (170)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHBCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHhhcCCcc
Confidence 45677889999999999999999999999865
No 231
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=72.78 E-value=3.7 Score=40.96 Aligned_cols=56 Identities=18% Similarity=0.139 Sum_probs=29.4
Q ss_pred CccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCC
Q psy1142 85 DLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145 (442)
Q Consensus 85 ~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gN 145 (442)
.|++|.|.+ .++.+..-. -..+++|+.|+|++|+|+.+.. ..+. +..|+++.|..|
T Consensus 158 ~L~~i~lp~-~l~~I~~~a--F~~c~~L~~l~l~~n~l~~I~~-~aF~-~~~L~~l~lp~~ 213 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDI--FYYCYNLKKADLSKTKITKLPA-STFV-YAGIEEVLLPVT 213 (401)
T ss_dssp CCCEEECCT-TCCEECSST--TTTCTTCCEEECTTSCCSEECT-TTTT-TCCCSEEECCTT
T ss_pred CceEEEeCC-CccEehHHH--hhCcccCCeeecCCCcceEech-hhEe-ecccCEEEeCCc
Confidence 466666664 455543211 1145667777777666665543 2222 236666666543
No 232
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=72.50 E-value=6.4 Score=27.70 Aligned_cols=35 Identities=26% Similarity=0.276 Sum_probs=26.7
Q ss_pred HHHHHHHHhCC-CHHHHHHHHHhcCCCHHHHHHHHHh
Q psy1142 394 MVKALSQVSGM-NLNFSEKCLNEVQWDYDQAVTIFNQ 429 (442)
Q Consensus 394 mv~~~~~~Tgm-n~~~s~~cL~~~~Wd~~~A~~~F~~ 429 (442)
.|.+|... |. +.+-..+.|..++||.++|+.....
T Consensus 12 ~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 12 QLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp HHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34555554 88 5566799999999999999986654
No 233
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=71.95 E-value=6.6 Score=29.45 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy1142 393 NMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFN 428 (442)
Q Consensus 393 ~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~ 428 (442)
+.|++|... |...+-+++.|..++||.++|+.-..
T Consensus 31 ~~v~~L~~M-GF~~~~a~~AL~~t~~nve~Ave~L~ 65 (73)
T 1wiv_A 31 SSVDTLLSF-GFAEDVARKALKASGGDIEKATDWVF 65 (73)
T ss_dssp HHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 356666654 99999999999999999999987654
No 234
>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics, joint center for structural genomics; HET: MSE; 1.55A {Pectobacterium atrosepticum SCRI1043}
Probab=71.06 E-value=2.6 Score=36.12 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHH
Q psy1142 203 ARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILR 282 (442)
Q Consensus 203 ~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~ 282 (442)
+...+.++++.|+..+.++|...|..+|++++.|.- +..+ .-+.|++.|..
T Consensus 18 ~~~~~~~~l~~f~~a~~~gD~~aL~~LlA~Dvv~~~--P~~~---------------------------~~~~G~~av~~ 68 (148)
T 3f8x_A 18 PNAAVQSGLQEWHRIIAEADWERLPDLLAEDVVFSN--PSTF---------------------------DPYHGKGPLMV 68 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTCGGGSGGGEEEEEEEEC--SSCS---------------------------SCEESHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHhCCCEEEEC--CCCC---------------------------CCcCCHHHHHH
Confidence 346778889999999998899999999999999961 1100 12789999999
Q ss_pred HHHhC
Q psy1142 283 ALRFL 287 (442)
Q Consensus 283 ~l~~L 287 (442)
+|..+
T Consensus 69 ~~~~~ 73 (148)
T 3f8x_A 69 ILPAV 73 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 235
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=70.92 E-value=6.8 Score=30.33 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHh
Q psy1142 392 QNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQ 429 (442)
Q Consensus 392 ~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 429 (442)
++.|.+|... |...+-|++.|..++||.++|+.-...
T Consensus 22 ~~~I~qL~~M-GF~~~~a~~AL~~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 22 SRLIKQLTDM-GFPREPAEEALKSNNMNLDQAMSALLE 58 (85)
T ss_dssp HHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6678888875 999999999999999999999987654
No 236
>1uli_B Biphenyl dioxygenase small subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: d.17.4.4 PDB: 1ulj_B* 3en1_B* 3eqq_B
Probab=70.61 E-value=42 Score=29.41 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=35.9
Q ss_pred ChhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEe
Q psy1142 200 HPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV 240 (442)
Q Consensus 200 ~~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~ 240 (442)
+.+.+..+.+|+-+|-.+.|.++-..+..+|++++.|.+..
T Consensus 19 ~~~~~~eI~~~l~r~A~lLD~~d~d~w~~lfteD~~y~~p~ 59 (187)
T 1uli_B 19 DPSLQHEIEQFYYWEAKLLNDRRFQEWFDLLAEDIHYFMPI 59 (187)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHTEEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHhcCcCHHHHHHHcccCEEEEeec
Confidence 45678899999999999999988889999999999997543
No 237
>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A*
Probab=69.65 E-value=4.6 Score=33.83 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=47.9
Q ss_pred HHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHhCC
Q psy1142 209 AFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFLP 288 (442)
Q Consensus 209 ~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~LP 288 (442)
++-.+|-..+-+.|-+.|..+|..++.|. + +...+-+.|+..|+++|+.--
T Consensus 24 qlA~~Yi~AlT~hDy~~L~~FynrdsVf~---D--------------------------~ta~~~YtG~r~Ii~Fl~RaH 74 (154)
T 3gzb_A 24 QLAVKYMDALTEHDYKTLITFYNRDSIFF---D--------------------------KTANRKYTGGRFIIDFLERAH 74 (154)
T ss_dssp HHHHHHHHHHHTTCHHHHHTTCCTTCEEE---E--------------------------TTTTEEEESHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCHHHHHHHhCccceee---e--------------------------eccCcceeCcHHHHHHHHHHh
Confidence 44455665554448999999999999996 1 112234899999999999753
Q ss_pred CCccCCCCeeeeecCCCCCeEEEEEeeeE
Q psy1142 289 ATKHDLLSFTCDCPLYTPGLIQFSVCGLY 317 (442)
Q Consensus 289 ~t~H~~~sf~vD~~~~~~~~l~i~V~G~f 317 (442)
...-. -.|.++-...++..+ ...|-+
T Consensus 75 ~gvLe-y~fnieHmfnsGsLV--VmiGnY 100 (154)
T 3gzb_A 75 QGVLE-YDFNIEHMYNAGSLV--VMIGNY 100 (154)
T ss_dssp TTCCC-CEEEEEEEEEETTEE--EEEEEE
T ss_pred hhhee-eccChhhhccCCcEE--EEEcce
Confidence 22111 124455554444433 455663
No 238
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=69.49 E-value=7.1 Score=26.48 Aligned_cols=35 Identities=11% Similarity=0.254 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHhcCCCHHHHHHHH
Q psy1142 392 QNMVKALSQVSGM-NLNFSEKCLNEVQWDYDQAVTIF 427 (442)
Q Consensus 392 ~~mv~~~~~~Tgm-n~~~s~~cL~~~~Wd~~~A~~~F 427 (442)
++.|.++... |. +.+-..+.|..++||.++|+...
T Consensus 8 ~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L 43 (46)
T 2bwb_A 8 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSL 43 (46)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHH
Confidence 4456666655 76 57778999999999999998754
No 239
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.47 E-value=11 Score=29.08 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHh
Q psy1142 392 QNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQ 429 (442)
Q Consensus 392 ~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 429 (442)
++.|.+|... |...+-|.+.|..++||.++|+.-..+
T Consensus 30 e~~i~~L~~M-GF~~~~a~~AL~~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 30 EAALRQLTEM-GFPENRATKALQLNHMSVPQAMEWLIE 66 (83)
T ss_dssp HHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4467777764 999999999999999999999877655
No 240
>1nww_A Limonene-1,2-epoxide hydrolase; HET: MES; 1.20A {Rhodococcus erythropolis} SCOP: d.17.4.8 PDB: 1nu3_A*
Probab=68.07 E-value=5.1 Score=33.19 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=39.8
Q ss_pred HHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHh
Q psy1142 207 LRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRF 286 (442)
Q Consensus 207 ~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~ 286 (442)
..+.+++||..++.+|-..+..+|++++.|.. +.. .-..|+++|.+++..
T Consensus 24 ~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~~--~~~----------------------------~~~~G~~~i~~~~~~ 73 (149)
T 1nww_A 24 DEKIVLEFMDALTSNDAAKLIEYFAEDTMYQN--MPL----------------------------PPAYGRDAVEQTLAG 73 (149)
T ss_dssp HHHHHHHHHHHGGGCCHHHHHTTBCSSCEEEE--TTS----------------------------CCEESHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHhCCCEEEEc--CCC----------------------------CCccCHHHHHHHHHH
Confidence 34567778888888899999999999999852 110 016899999999887
Q ss_pred CCC
Q psy1142 287 LPA 289 (442)
Q Consensus 287 LP~ 289 (442)
+..
T Consensus 74 ~~~ 76 (149)
T 1nww_A 74 LFT 76 (149)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 241
>3gzx_B Biphenyl dioxygenase subunit beta; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} SCOP: d.17.4.4 PDB: 3gzy_B* 2yfi_B 2xr8_B* 2xrx_B* 2xsh_B 2xso_B 2yfj_B* 2yfl_B*
Probab=67.91 E-value=23 Score=31.28 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=78.0
Q ss_pred ChhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCC-Ccch-----hh--hcccCcccccCCChhhhhh
Q psy1142 200 HPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGN-NHLL-----NN--MLANSRNLLRIEEPQRQKS 271 (442)
Q Consensus 200 ~~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~-~~~~-----~~--Y~~~sRNl~~~~~~~~r~~ 271 (442)
+.+.+..+.+|+-+|-.+.|.++-.....+|++++.|.+-...+... .... .. +.-.+|-.+ ..|+.
T Consensus 18 ~~~~~~~i~~~l~~~a~llD~~~~~~w~~lft~D~~Y~~p~~~~~~~~d~~~~~~~~~~~~~~~d~r~~L-----~~RV~ 92 (186)
T 3gzx_B 18 SLELQHQVEQFYYREAQLLDHHAFQAWFALLAEDIHYWMPIRTVRTAREQGLEYVPAGANAHFDDTHATM-----YGRIR 92 (186)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEECBCCCCGGGGGGSBCCTTSCEEEEECHHHH-----HHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcccCHHHHHHhCCCCEEEEEecCCCccccccccccCccccceeeeCCHHHH-----HHHHH
Confidence 56788899999999999999988888999999999998654322100 0000 00 011121111 23444
Q ss_pred hhccCHHHHHHHHHhCC--CCccCCCCeeeeecCCCCCeEEEEEeeeEEEec-CCCCCCCCCeeeEEEEEEEEeCCCC-c
Q psy1142 272 LLSVGKADILRALRFLP--ATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEIT-TGTKNKSKLIRAFNRAFLLVPRSGG-G 347 (442)
Q Consensus 272 ~l~~G~~~I~~~l~~LP--~t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~-~~~~~~~~~~r~F~RtFvl~p~~~~-~ 347 (442)
++..|. .+.+-| .|.|-++...|+... .++.+ .|.-.|.-.. .. .. ...+.+=.+.-.|+...+| +
T Consensus 93 rl~t~~-----~~a~~P~~RtrH~vsNv~v~~~~-~~~~~--~vrs~~~v~~~r~-~~-~~~~~~G~y~D~L~r~~~g~~ 162 (186)
T 3gzx_B 93 QKTSDL-----NWAEDPPSRTRHLVSNVIVREMD-TPGTL--EVASAFLLYRSRL-ER-QVDVFAGERRDVLRIADNPLG 162 (186)
T ss_dssp HHTTTC-----CGGGSSCCEEEEEEEEEEEEECS-STTEE--EEEEEEEEEEEET-TT-EEEEEEEEEEEEEEECSSTTS
T ss_pred HHhccc-----ccccCCCceEEEEEcCEEEEEec-CCCEE--EEEEEEEEEEEcC-CC-cEEEEEEEEEEEEEEcCCCce
Confidence 444332 133445 668888885555431 12222 2222222110 00 00 1122333456677773345 7
Q ss_pred eEEEcceeEeec
Q psy1142 348 FAITNDQLFITS 359 (442)
Q Consensus 348 ~~I~ND~l~ir~ 359 (442)
|+|..=...+-.
T Consensus 163 wrI~~R~V~lD~ 174 (186)
T 3gzx_B 163 FQIAKRTIILDQ 174 (186)
T ss_dssp EEEEEEEEEESC
T ss_pred EEEEEEEEEEcC
Confidence 999887666554
No 242
>3eby_A Beta subunit of A putative aromatic-ring-hydroxyl dioxygenase; YP_001165631.1; 1.75A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} SCOP: d.17.4.4
Probab=67.67 E-value=29 Score=29.61 Aligned_cols=40 Identities=13% Similarity=0.242 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEe
Q psy1142 201 PEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV 240 (442)
Q Consensus 201 ~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~ 240 (442)
.+.+..+.+|+-+|-.+.|.++=..+..+|++++.|.+..
T Consensus 10 ~~~~~~I~~ll~rya~~lD~~d~d~w~~lft~D~~y~~p~ 49 (163)
T 3eby_A 10 QVAQSAIDDFNAAYGLCLDDDRLEQWPTLFVDDCLYQVIA 49 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCGGGTGGGEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHhhcCCEEEEeec
Confidence 3456789999999999999988889999999999997654
No 243
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=67.52 E-value=9.3 Score=27.31 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHhcCCCHHHHHHHHH
Q psy1142 392 QNMVKALSQVSGM-NLNFSEKCLNEVQWDYDQAVTIFN 428 (442)
Q Consensus 392 ~~mv~~~~~~Tgm-n~~~s~~cL~~~~Wd~~~A~~~F~ 428 (442)
++.|++|... |. +.+-..+.|..++||.++|+....
T Consensus 18 ~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~ 54 (58)
T 1wr1_B 18 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLL 54 (58)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4456777665 76 678889999999999999987643
No 244
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}
Probab=67.38 E-value=3.6 Score=39.10 Aligned_cols=58 Identities=9% Similarity=0.146 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHH
Q psy1142 204 RDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRA 283 (442)
Q Consensus 204 ~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~ 283 (442)
.+...+.+++||..++.+|...|..+|++++.|. -+..+ .-..|+++|.++
T Consensus 137 ~~~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~--~P~~~---------------------------~~~~G~~ai~~~ 187 (283)
T 3rga_A 137 EERRKELAREHCLRINDGDVDGLLKLYSPRIRFE--DPVGS---------------------------WTRTGLEALRAH 187 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEE--SSTTS---------------------------CEEESHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHhcCCCeEEE--CCCCC---------------------------CcccCHHHHHHH
Confidence 4567788999999999989999999999999985 11110 027999999999
Q ss_pred HHhCCCC
Q psy1142 284 LRFLPAT 290 (442)
Q Consensus 284 l~~LP~t 290 (442)
+..+-..
T Consensus 188 ~~~~~~~ 194 (283)
T 3rga_A 188 ATMAVGS 194 (283)
T ss_dssp HHHHHHT
T ss_pred HHHhhcc
Confidence 9876654
No 245
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.29 E-value=11 Score=28.29 Aligned_cols=37 Identities=11% Similarity=0.183 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcC-CCHHHHHHHHHh
Q psy1142 392 QNMVKALSQVSGMNLNFSEKCLNEVQ-WDYDQAVTIFNQ 429 (442)
Q Consensus 392 ~~mv~~~~~~Tgmn~~~s~~cL~~~~-Wd~~~A~~~F~~ 429 (442)
+++|.+|... |...+-|++.|..++ ||.++|+.-..+
T Consensus 10 e~~v~~L~~M-GF~~~~a~~AL~~t~n~~ve~A~ewL~~ 47 (74)
T 2dag_A 10 ESVIIQLVEM-GFPMDACRKAVYYTGNSGAEAAMNWVMS 47 (74)
T ss_dssp HHHHHHHHHH-SCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 3467777764 999999999999997 699999977655
No 246
>4h3u_A Hypothetical protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.15A {Catenulispora acidiphila}
Probab=67.28 E-value=2.8 Score=35.57 Aligned_cols=51 Identities=10% Similarity=0.090 Sum_probs=39.1
Q ss_pred HHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHhCC
Q psy1142 209 AFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFLP 288 (442)
Q Consensus 209 ~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~LP 288 (442)
+.++.|+..|..+|-..+..+|++++.|. +.. . . ..++|+++|.+++..+.
T Consensus 29 eiv~~y~~A~n~~D~d~~~~l~a~D~v~~---d~~--~-g-----------------------~~~~Greai~~~~~~~~ 79 (158)
T 4h3u_A 29 EIVTAWAAAWTGTNPNALGTLFAADGTYV---DHA--I-G-----------------------ATMTGREQISGWKARTD 79 (158)
T ss_dssp HHHHHHHHHHHSSCHHHHHTTEEEEEEEE---ETT--T-T-----------------------EEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhcccceEe---ccC--C-C-----------------------ceEecchhhhhhhhhhh
Confidence 45788999999889999999999999985 111 0 0 12789999999987653
No 247
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=66.78 E-value=6.2 Score=39.27 Aligned_cols=63 Identities=14% Similarity=0.166 Sum_probs=44.8
Q ss_pred cCCCCccEEeCCCCCCC-----CCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCC
Q psy1142 81 ENLPDLFALNLSENKLY-----YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWT 148 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~-----~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~ 148 (442)
..+++|+.|.|.+|.+. .+..- .-..+++|+.|+|. |.|+.+.. ..+.++.+|++|.|..| +.
T Consensus 268 ~~c~~L~~l~l~~~~~~~~~~~~I~~~--aF~~c~~L~~l~l~-~~i~~I~~-~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 268 YYCPELAEVTTYGSTFNDDPEAMIHPY--CLEGCPKLARFEIP-ESIRILGQ-GLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp TTCTTCCEEEEESSCCCCCTTCEECTT--TTTTCTTCCEECCC-TTCCEECT-TTTTTCCSCCEEEECTT-CC
T ss_pred hCCCCCCEEEeCCccccCCcccEECHH--HhhCCccCCeEEeC-CceEEEhh-hhhcCCCCccEEEECcc-cc
Confidence 45678999999998876 23221 11268899999999 45777664 56778889999999665 44
No 248
>3dxo_A Uncharacterized snoal-like protein; putative isomerase of the snoal-like family; HET: MSE PGE; 2.70A {Agrobacterium tumefaciens str} SCOP: d.17.4.19
Probab=64.59 E-value=3.7 Score=33.36 Aligned_cols=49 Identities=22% Similarity=0.311 Sum_probs=33.3
Q ss_pred HHHHHHHhhcccccC----hhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHH
Q psy1142 208 RAFLEQYFALFDTES----RAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRA 283 (442)
Q Consensus 208 ~~Fl~~yf~~~D~~~----R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~ 283 (442)
..++++|+..|...| +..|..+|++++.|+ -+ .. -..|+++|.++
T Consensus 6 ~~~v~ry~~aw~~~d~~~~~~~l~~l~a~D~~~~--dP--------~~---------------------~~~G~~ai~~~ 54 (121)
T 3dxo_A 6 LTIAQTYLAAWNEEDNERRRHLVGQAWAENTRYV--DP--------LM---------------------QGEGQQGIAAM 54 (121)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHEEEEEEEE--CS--------SC---------------------EEEHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEEE--CC--------CC---------------------CcCCHHHHHHH
Confidence 455666666665433 356889999999996 11 00 17899999998
Q ss_pred HHhC
Q psy1142 284 LRFL 287 (442)
Q Consensus 284 l~~L 287 (442)
+..+
T Consensus 55 ~~~~ 58 (121)
T 3dxo_A 55 IEAA 58 (121)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 249
>1z1s_A Hypothetical protein PA3332; beta barrel, conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: PGE; 1.49A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.10
Probab=63.85 E-value=2.7 Score=36.02 Aligned_cols=58 Identities=16% Similarity=0.261 Sum_probs=41.6
Q ss_pred HHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHhC
Q psy1142 208 RAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFL 287 (442)
Q Consensus 208 ~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~L 287 (442)
.+.+++||..++.+|...|..+|++++.|. .+..+. .+ ..-+.|+++|.+++..+
T Consensus 26 ~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~--~P~~~~---g~--------------------~~~~~G~~ai~~~~~~~ 80 (163)
T 1z1s_A 26 KEILVHSLRLLENGDARGWCDLFHPEGVLE--FPYAPP---GW--------------------KTRFEGRETIWAHMRLF 80 (163)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEEEEE--CSSCCT---TS--------------------CCEEESHHHHHHTTTTG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHCCCCEEEE--CcCCCC---CC--------------------CcccCCHHHHHHHHHHH
Confidence 344678888889889999999999999986 332110 00 00278999999999877
Q ss_pred CCC
Q psy1142 288 PAT 290 (442)
Q Consensus 288 P~t 290 (442)
...
T Consensus 81 ~~~ 83 (163)
T 1z1s_A 81 PEH 83 (163)
T ss_dssp GGT
T ss_pred HHh
Confidence 653
No 250
>2b1x_B Naphthalene dioxygenase small subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: d.17.4.4 PDB: 2b24_B
Probab=63.84 E-value=59 Score=27.67 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=35.2
Q ss_pred ChhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEe
Q psy1142 200 HPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV 240 (442)
Q Consensus 200 ~~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~ 240 (442)
+.+.+..+.+|+-+|-...|.++-..+..+|++++.|.+..
T Consensus 8 ~~~~~~~I~~ll~rya~~lD~~d~d~w~~lft~D~~y~~p~ 48 (172)
T 2b1x_B 8 SDTTVREITEWLYMEAELLDAGKYREWLALVTEDLSYVVPI 48 (172)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhccCHHHHHHhccCCEEEEEEe
Confidence 34567889999999999999988889999999999987543
No 251
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=61.32 E-value=12 Score=29.90 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHH
Q psy1142 393 NMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVT 425 (442)
Q Consensus 393 ~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~ 425 (442)
+.|..+++|+|-..+=|.+-|++++||.-.|+-
T Consensus 67 edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~ 99 (102)
T 1tr8_A 67 DDIELVMNQTGASREDATRALQETGGDLAEAIM 99 (102)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHH
Confidence 468888999999999999999999999999874
No 252
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=60.84 E-value=10 Score=27.57 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=29.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhc-CCCHHHHHHHHHh
Q psy1142 394 MVKALSQVSGMNLNFSEKCLNEV-QWDYDQAVTIFNQ 429 (442)
Q Consensus 394 mv~~~~~~Tgmn~~~s~~cL~~~-~Wd~~~A~~~F~~ 429 (442)
+|.+|.. -|...+.|++.|..+ +||.++|+.-..+
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 12 ALESLIE-MGFPRGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp HHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 6677766 499999999999999 6999999987765
No 253
>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=60.32 E-value=11 Score=30.57 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhcccccChhhHHhccccCceEE
Q psy1142 206 ILRAFLEQYFALFDTESRAGLIDAYHENAQYS 237 (442)
Q Consensus 206 ~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fS 237 (442)
...+.+++||..|..+|...|..+|++++.|.
T Consensus 18 ~~~~~v~~~~~a~~~~D~~~l~~l~a~D~v~~ 49 (129)
T 3fh1_A 18 QTAEIMRRFNDVFQLHDPAALPELIAEECVIE 49 (129)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHEEEEEEEE
T ss_pred hHHHHHHHHHHHHHccCHHHHHHhcCCCEEEE
Confidence 34566788888888878999999999999986
No 254
>3ebt_A Uncharacterized NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; 1.30A {Burkholderia pseudomallei K96243} SCOP: d.17.4.9
Probab=59.89 E-value=37 Score=26.93 Aligned_cols=59 Identities=10% Similarity=0.235 Sum_probs=40.0
Q ss_pred HHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHhCC
Q psy1142 209 AFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFLP 288 (442)
Q Consensus 209 ~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~LP 288 (442)
+-+++||..|..+|-..+..+|+++..+....... ++. .....+|+++|.+.+..+.
T Consensus 7 ~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~~~~~~-----p~~------------------~~~~~~G~~~~~~~~~~~~ 63 (132)
T 3ebt_A 7 QTVRESYEAFHRRDLPGVLAALAPDVRWTHPDGMS-----PYG------------------LGGTKHGHDEVIAFIRHVP 63 (132)
T ss_dssp HHHHHHHHHHHTTCHHHHHTTEEEEEEEEECGGGG-----GGT------------------CCEEEEHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhccCHHHHHHhcCCCEEEEeCCCCC-----Ccc------------------cCCcCcCHHHHHHHHHHHH
Confidence 34667777788778899999999999886321100 000 0013789999999999876
Q ss_pred CC
Q psy1142 289 AT 290 (442)
Q Consensus 289 ~t 290 (442)
..
T Consensus 64 ~~ 65 (132)
T 3ebt_A 64 TH 65 (132)
T ss_dssp GT
T ss_pred hh
Confidence 54
No 255
>3i0y_A Putative polyketide cyclase; cystatin-like fold, structural genomics, joint center for ST genomics, JCSG, protein structure initiative; HET: MSE UNL; 1.50A {Xanthomonas campestris PV}
Probab=59.66 E-value=4 Score=33.39 Aligned_cols=54 Identities=15% Similarity=0.335 Sum_probs=42.0
Q ss_pred HHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHh
Q psy1142 207 LRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRF 286 (442)
Q Consensus 207 ~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~ 286 (442)
..+.+++||..++.+|-..+..+|++++.+. .+. . ....|+++|.+++..
T Consensus 10 ~~~~v~~~~~a~~~~D~~~~~~l~a~D~~~~--~p~--~--------------------------~~~~G~~~~~~~~~~ 59 (140)
T 3i0y_A 10 ATGLVQAYYEAFNRGDWDAMLAFLAEDVAHD--LNQ--G--------------------------PREIGRAAFASFLQR 59 (140)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEE--CTT--S--------------------------CEEESHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHcCCcEEEE--cCC--C--------------------------CceEcHHHHHHHHHH
Confidence 4577889999998889999999999998764 211 0 027899999999998
Q ss_pred CCCC
Q psy1142 287 LPAT 290 (442)
Q Consensus 287 LP~t 290 (442)
++..
T Consensus 60 ~~~~ 63 (140)
T 3i0y_A 60 MNDS 63 (140)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 8754
No 256
>2bng_A MB2760; epoxide hydrolase, limonene, hydrolase, structural proteomics in europe, spine, structural genomics; 2.5A {Mycobacterium tuberculosis} SCOP: d.17.4.8
Probab=59.55 E-value=10 Score=31.56 Aligned_cols=55 Identities=15% Similarity=0.127 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHH
Q psy1142 206 ILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALR 285 (442)
Q Consensus 206 ~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~ 285 (442)
...+.+++||..++.+|-..+..+|++++.+. +.. . ....|+++|.+++.
T Consensus 16 ~~~~~v~~f~~a~~~gD~~~l~~l~a~D~v~~---~~~----~-----------------------~~~~G~~~i~~~~~ 65 (149)
T 2bng_A 16 EAIRAVEAFLNALQNEDFDTVDAALGDDLVYE---NVG----F-----------------------SRIRGGRRTATLLR 65 (149)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEE---ETT----T-----------------------EEEECHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHcCCCEEEE---eCC----C-----------------------CCccCHHHHHHHHH
Confidence 34566788888888889999999999998875 110 0 02689999999999
Q ss_pred hCCCC
Q psy1142 286 FLPAT 290 (442)
Q Consensus 286 ~LP~t 290 (442)
.+...
T Consensus 66 ~~~~~ 70 (149)
T 2bng_A 66 RMQGR 70 (149)
T ss_dssp TTTTT
T ss_pred HHHhh
Confidence 88754
No 257
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=59.30 E-value=6.8 Score=32.40 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=48.7
Q ss_pred ChhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHH
Q psy1142 200 HPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKAD 279 (442)
Q Consensus 200 ~~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~ 279 (442)
+++..+.+.+.++.|+..+..+|-..|..++++++.+. ++.. .+ ...+.|+++
T Consensus 7 ~~~~~~~~~~~~~~f~~A~~~gD~~~l~~lla~D~v~~--~pg~-----~~--------------------~g~~~G~~~ 59 (134)
T 3dmc_A 7 SDNTLKVAHQGFEFFTQGLATGEWQKFLDMLTEDFTFW--FPMG-----EF--------------------HGLNVGKER 59 (134)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHSCCHHHHTTEEEEEEEE--ESSG-----GG--------------------BEEEESHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCHHHHHHHcCCCEEEE--ecCC-----CC--------------------CccchhHHH
Confidence 45667889999999999999889999999999999875 3321 10 113789999
Q ss_pred HHHHHHhCCC
Q psy1142 280 ILRALRFLPA 289 (442)
Q Consensus 280 I~~~l~~LP~ 289 (442)
|.++|..+..
T Consensus 60 v~~~~~~~~~ 69 (134)
T 3dmc_A 60 AKEFFTYVSE 69 (134)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887653
No 258
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=59.17 E-value=20 Score=27.50 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcC-CCHHHHHHHHHh
Q psy1142 392 QNMVKALSQVSGMNLNFSEKCLNEVQ-WDYDQAVTIFNQ 429 (442)
Q Consensus 392 ~~mv~~~~~~Tgmn~~~s~~cL~~~~-Wd~~~A~~~F~~ 429 (442)
+++|.+|... |...+-|.++|..++ ||.++|+.-..+
T Consensus 30 e~~v~~L~~M-GF~~~~a~~AL~~t~n~n~e~A~ewL~~ 67 (84)
T 1vek_A 30 EEIVAQLVSM-GFSQLHCQKAAINTSNAGVEEAMNWLLS 67 (84)
T ss_dssp HHHHHHHHHH-TCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4567777764 999999999999885 999999876654
No 259
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=59.04 E-value=15 Score=26.61 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCC-CHHHHHHHHH
Q psy1142 394 MVKALSQVSGMNLNFSEKCLNEVQW-DYDQAVTIFN 428 (442)
Q Consensus 394 mv~~~~~~Tgmn~~~s~~cL~~~~W-d~~~A~~~F~ 428 (442)
.|.+|... |...+-|.+.|..++| |.++|+.-..
T Consensus 22 ~i~~L~~M-GF~~~~a~~AL~~t~~~nve~A~ewL~ 56 (64)
T 2cpw_A 22 ALDVLLSM-GFPRARAQKALASTGGRSVQTACDWLF 56 (64)
T ss_dssp HHHHHHHH-TCCHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 56777664 9999999999999999 9999987654
No 260
>3h3h_A Uncharacterized snoal-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE UNL MES; 1.60A {Burkholderia thailandensis E264}
Probab=58.76 E-value=5.1 Score=32.21 Aligned_cols=33 Identities=9% Similarity=0.340 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhcccccChhhHHhccccCceEE
Q psy1142 205 DILRAFLEQYFALFDTESRAGLIDAYHENAQYS 237 (442)
Q Consensus 205 ~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fS 237 (442)
+.+.+++++||..|...|-..|..+|++++.|.
T Consensus 8 ~~~~~~~~~~~~a~n~~D~~~l~~l~a~D~v~~ 40 (122)
T 3h3h_A 8 AFAQQFSREWIDAWNAHDLDAILSHYADGFEMS 40 (122)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHhcCCCEEEE
Confidence 456788999999999889999999999999986
No 261
>2k54_A Protein ATU0742; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Agrobacterium tumefaciens str} SCOP: d.17.4.29
Probab=58.66 E-value=11 Score=29.92 Aligned_cols=53 Identities=11% Similarity=0.119 Sum_probs=39.6
Q ss_pred HHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHh
Q psy1142 207 LRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRF 286 (442)
Q Consensus 207 ~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~ 286 (442)
..+.+++||..|..+|...+..+|++++.+. +. |+ . ....|+++|.+++..
T Consensus 5 ~~~~v~~~~~a~n~~D~~~~~~~~a~D~~~~---~~-~g--~-----------------------~~~~G~~ai~~~~~~ 55 (123)
T 2k54_A 5 IELPVQKQLEAYNARDIDAFMAWWADDCQYY---AF-PA--T-----------------------LLAGNAAEIRVRHIE 55 (123)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHTEEEEEEEE---ET-TT--E-----------------------EEEESHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHhhcCCceEEE---cC-CC--C-----------------------cccCCHHHHHHHHHH
Confidence 3456888999998889999999999998763 11 10 0 126899999999986
Q ss_pred CC
Q psy1142 287 LP 288 (442)
Q Consensus 287 LP 288 (442)
+-
T Consensus 56 ~~ 57 (123)
T 2k54_A 56 RF 57 (123)
T ss_dssp HT
T ss_pred Hc
Confidence 53
No 262
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces lasaliensis}
Probab=57.63 E-value=8.1 Score=36.56 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHH
Q psy1142 205 DILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRAL 284 (442)
Q Consensus 205 ~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l 284 (442)
+...+.+++||..++.+|...|..+|++++.|. -+..+ .-..|+++|.++|
T Consensus 6 ~~~~~~v~~~~~~~~~~D~~~l~~l~a~Dav~~--~P~~~---------------------------~~~~Gr~ai~~~~ 56 (283)
T 3rga_A 6 TVRKEVALEYCRRVNAGELEGVLQLFAPDARLV--DPLGT---------------------------EPVVGRAALAARL 56 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHTEEEEEEEE--CSSSS---------------------------CCEESHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHhcCCCEEEE--CCCCC---------------------------CCcCcHHHHHHHH
Confidence 346677899999999889999999999999986 11110 0279999999999
Q ss_pred HhCC
Q psy1142 285 RFLP 288 (442)
Q Consensus 285 ~~LP 288 (442)
..+-
T Consensus 57 ~~~~ 60 (283)
T 3rga_A 57 APAL 60 (283)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8643
No 263
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=57.61 E-value=21 Score=25.48 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=29.8
Q ss_pred HhCCCHHHHHHHHHhcCCCHHHHHHHHHhhhhc
Q psy1142 401 VSGMNLNFSEKCLNEVQWDYDQAVTIFNQLKAK 433 (442)
Q Consensus 401 ~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~ 433 (442)
.-+|..+--+..|+.+++|+++|+..+.++...
T Consensus 20 FP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~ 52 (59)
T 1wgl_A 20 FPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE 52 (59)
T ss_dssp CSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCC
Confidence 569999999999999999999999999987543
No 264
>3e99_A Benzoate 1,2-dioxygenase beta subunit; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Burkholderia mallei atcc 23344} SCOP: d.17.4.4
Probab=56.71 E-value=15 Score=31.74 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhcccccChhhHHhccccCceEEEEe
Q psy1142 204 RDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV 240 (442)
Q Consensus 204 ~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~ 240 (442)
+..+.+|+-+|-.+.|.++-..+..+|++++.|.+..
T Consensus 7 ~~~i~~~l~~~a~~lD~~~~~~w~~lf~~D~~Y~~p~ 43 (164)
T 3e99_A 7 LADIQAFLYRESRLLDDKAWDAWLDCYRADAVFWMPS 43 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHhcCCCEEEEEec
Confidence 4578899999999999988889999999999987544
No 265
>3g16_A Uncharacterized protein with cystatin-like fold; YP_001022489.1, protein of unknown function with cystatin-LI structural genomics; HET: MSE; 1.45A {Methylibium petroleiphilum PM1}
Probab=55.80 E-value=10 Score=32.73 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecC-CCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHH
Q psy1142 205 DILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQG-LGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRA 283 (442)
Q Consensus 205 ~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~-~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~ 283 (442)
....+.+++||..|..+|-..+..++++++.+-. +.. |+. -..|+++|.++
T Consensus 10 ~~~~~~v~ry~~A~n~gD~d~l~~l~aeD~v~~~--p~~~p~~--------------------------~~~Greai~~~ 61 (156)
T 3g16_A 10 AAMEKVIRTYYDGCNEADEAKMIACFVPEAVHYF--PAGMYGG--------------------------AFRGAAQIAHR 61 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHTTEEEEEEEEC--BTTSTTS--------------------------CEESHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHhcCCCEEEec--CCCCCCC--------------------------CccCHHHHHHH
Confidence 5677889999999999899999999999999863 211 110 16899999999
Q ss_pred HHhCCCC
Q psy1142 284 LRFLPAT 290 (442)
Q Consensus 284 l~~LP~t 290 (442)
|..+..+
T Consensus 62 f~~~~~~ 68 (156)
T 3g16_A 62 WRTAVET 68 (156)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9876543
No 266
>3fgy_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.59A {Burkholderia xenovorans LB400} SCOP: d.17.4.0
Probab=55.57 E-value=5.2 Score=32.45 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=38.7
Q ss_pred HHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHhC
Q psy1142 208 RAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFL 287 (442)
Q Consensus 208 ~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~L 287 (442)
.+-+++||..+..+|...+..+|++++.+.. +.. .++ ...+.|+++|.+++..+
T Consensus 8 ~~~v~~~~~a~~~~d~~~~~~l~a~D~~~~~--p~~----~p~--------------------~g~~~G~~~i~~~~~~~ 61 (135)
T 3fgy_A 8 VQIVKDFFAAMGRGDKKGLLAVSAEDIEWII--PGE----WPL--------------------AGTHRGHAALAALLQKA 61 (135)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHTEEEEEEEEE--CSS----STT--------------------CEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCeEEEE--cCC----Ccc--------------------ceEEeCHHHHHHHHHHH
Confidence 4556777778888899999999999998763 211 000 01268999999888765
Q ss_pred C
Q psy1142 288 P 288 (442)
Q Consensus 288 P 288 (442)
.
T Consensus 62 ~ 62 (135)
T 3fgy_A 62 S 62 (135)
T ss_dssp H
T ss_pred H
Confidence 4
No 267
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=55.39 E-value=9.9 Score=37.19 Aligned_cols=59 Identities=8% Similarity=0.175 Sum_probs=36.5
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gN 145 (442)
....|+.+.+.+| ++.+..-. -..+.+|+.++|.++ ++.+++ ..+.++.+|+++.|..|
T Consensus 295 ~~~~L~~i~l~~~-i~~I~~~a--F~~c~~L~~i~lp~~-v~~I~~-~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIGEEA--FESCTSLVSIDLPYL-VEEIGK-RSFRGCTSLSNINFPLS 353 (394)
T ss_dssp TCTTCCEEEECTT-CCEECTTT--TTTCTTCCEECCCTT-CCEECT-TTTTTCTTCCEECCCTT
T ss_pred ccccccccccccc-cceechhh--hcCCCCCCEEEeCCc-ccEEhH-HhccCCCCCCEEEECcc
Confidence 3467788887654 55553211 125677888888644 555543 35667778888887665
No 268
>3f7x_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL; 1.24A {Pseudomonas putida KT2440}
Probab=54.92 E-value=3.8 Score=34.66 Aligned_cols=60 Identities=17% Similarity=0.343 Sum_probs=40.8
Q ss_pred CcCChhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccC
Q psy1142 197 FLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVG 276 (442)
Q Consensus 197 f~~~~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G 276 (442)
||...+.+++ +++||..++.+|-..+..+|++++.+. .+.. . ...|
T Consensus 16 ~~~~~~~~~l----v~~~~~a~~~~D~~~l~~l~a~D~v~~--~p~g----~------------------------~~~G 61 (151)
T 3f7x_A 16 YFQGMTATEL----VNAYYAAFNAGDMPAFLALLSEDVIHD--INQG----E------------------------RQMG 61 (151)
T ss_dssp ---CCCHHHH----HHHHHHHHHHTCHHHHHHTEEEEEEEE--CTTS----C------------------------EEES
T ss_pred eecCHHHHHH----HHHHHHHHHcCCHHHHHHhcCCCEEEE--CCCC----C------------------------CcCC
Confidence 4555555555 456666777778899999999999974 2210 0 2789
Q ss_pred HHHHHHHHHhCCCC
Q psy1142 277 KADILRALRFLPAT 290 (442)
Q Consensus 277 ~~~I~~~l~~LP~t 290 (442)
+++|.+++..++..
T Consensus 62 ~e~i~~~~~~~~~~ 75 (151)
T 3f7x_A 62 KARFAAFMEKMNRC 75 (151)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999877643
No 269
>3f14_A Uncharacterized NTF2-like protein; YP_680363.1, NTF2-like protein of unknown function, structur genomics; HET: MSE TRS PGE; 1.45A {Cytophaga hutchinsonii atcc 33406}
Probab=54.68 E-value=13 Score=29.27 Aligned_cols=96 Identities=10% Similarity=0.155 Sum_probs=56.6
Q ss_pred HHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHhCC
Q psy1142 209 AFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFLP 288 (442)
Q Consensus 209 ~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~LP 288 (442)
+.+++||..|+.+|-..+..+.+++..+. .+.. ....|++++.+++..+.
T Consensus 4 ~~v~~~~~a~~~gD~~~~~~~ladDv~w~--~~g~----------------------------~~~~G~~~~~~~~~~~~ 53 (112)
T 3f14_A 4 TTHYSIAQHFSSGDFPAVYACFNDIIEWN--IIGN----------------------------QVVKGKADVIDFCNKML 53 (112)
T ss_dssp HHHHHHHHHHHTTCGGGTGGGEEEEEEEE--ETTT----------------------------EEEESHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHhcCCceEEE--EcCC----------------------------ccEecHHHHHHHHHHHH
Confidence 45889999999889999999999987653 2210 02679999998887654
Q ss_pred CCccCCCCeeeeecCCCCCeEEEEEeeeEEEec-CCCCCCCCCeeeEEEEEEEE
Q psy1142 289 ATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEIT-TGTKNKSKLIRAFNRAFLLV 341 (442)
Q Consensus 289 ~t~H~~~sf~vD~~~~~~~~l~i~V~G~f~e~~-~~~~~~~~~~r~F~RtFvl~ 341 (442)
..--+ ..+.+.-....+. .+.|+|.+.-.. +| ......|.-.|-+.
T Consensus 54 ~~~~~-~~~~i~~~i~~Gd--~Vvv~~~~~~~~~~g----~~~~~~~~~vf~~~ 100 (112)
T 3f14_A 54 PEMKG-AVLTNDNVIQNEN--QIVIEGKCRYFDAEG----KEAFVSYCDIYRFE 100 (112)
T ss_dssp HHHHT-SEEEEEEEEECSS--EEEEEEEEEEECTTS----CEEEEEEEEEEEEE
T ss_pred hhcCC-cEEEEEEEEEeCC--EEEEEEEEEEEeCCC----CEEEEEEEEEEEEe
Confidence 22111 1222222222233 355777776431 11 22334566777764
No 270
>1s5a_A Hypothetical protein YESE; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Bacillus subtilis} SCOP: d.17.4.10
Probab=54.38 E-value=7.3 Score=32.06 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=41.1
Q ss_pred HHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHh
Q psy1142 207 LRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRF 286 (442)
Q Consensus 207 ~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~ 286 (442)
..+.+++||..++.+|...+..+|++++.+. .+..+.. .+ ....|+++|.+++..
T Consensus 12 ~~~~v~~~~~a~~~~D~~~l~~l~a~D~~~~--~p~~~~g-~~----------------------~~~~G~~~i~~~~~~ 66 (150)
T 1s5a_A 12 ACETLRKFMAYMLEKDMKSWTELWDENAVFE--FPYAPEG-SP----------------------KRIEGKAAIYDYIKD 66 (150)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEE--CTTCCTT-SC----------------------SEEESHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhCCCCEEEE--eecCCCC-CC----------------------ccccCHHHHHHHHHH
Confidence 4566788888888889999999999999985 2211000 00 027899999999886
Q ss_pred CCC
Q psy1142 287 LPA 289 (442)
Q Consensus 287 LP~ 289 (442)
+..
T Consensus 67 ~~~ 69 (150)
T 1s5a_A 67 YPK 69 (150)
T ss_dssp HHH
T ss_pred hhh
Confidence 643
No 271
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.09 E-value=24 Score=23.67 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy1142 392 QNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFN 428 (442)
Q Consensus 392 ~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~ 428 (442)
++.|.+|.. -|...+.+.+.|..+| |.++|+.-..
T Consensus 10 ~~~v~~L~~-MGF~~~~a~~AL~~~~-n~e~A~~~L~ 44 (47)
T 2ekk_A 10 QQQLQQLMD-MGFTREHAMEALLNTS-TMEQATEYLL 44 (47)
T ss_dssp HHHHHHHHH-HHCCHHHHHHHHHHSC-SHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcC-CHHHHHHHHH
Confidence 345677766 4999999999999998 9999987653
No 272
>2bmo_B Oxygenase-beta NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: d.17.4.4 PDB: 2bmq_B 2bmr_B* 1o7n_B 1ndo_B 1o7g_B* 1o7h_B 1o7m_B 1eg9_B 1o7p_B* 1o7w_B 1uuv_B 1uuw_B 2hmj_B 2hmk_B* 2hml_B* 2hmm_B* 2hmn_B* 2hmo_B*
Probab=53.56 E-value=96 Score=27.35 Aligned_cols=41 Identities=10% Similarity=0.250 Sum_probs=35.8
Q ss_pred ChhhHHHHHHHHHHHhhcccccChhhHHh-ccccCceEEEEe
Q psy1142 200 HPEARDILRAFLEQYFALFDTESRAGLID-AYHENAQYSLVV 240 (442)
Q Consensus 200 ~~~~~~~~~~Fl~~yf~~~D~~~R~~L~~-~Y~~~a~fSls~ 240 (442)
+.+.+..+.+|+-+|-.+.|.++=..+.. +|++++.|.+..
T Consensus 27 ~~~~~~eI~~fl~reA~lLD~~~~d~W~~~lfteD~~y~~p~ 68 (194)
T 2bmo_B 27 DSDLQQEVTTLLTREAHLLDIQAYKAWLEHFVAPEIKYQVIS 68 (194)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhcccCHHHHHHhhcCCCEEEEEec
Confidence 45678899999999999999978889999 999999997554
No 273
>1wql_B Ethylbenzene dioxygenase small subunit; biphenyl dioxygenase, cumene dioxygenase; 2.20A {Pseudomonas fluorescens} SCOP: d.17.4.4
Probab=51.93 E-value=1.2e+02 Score=26.35 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=35.9
Q ss_pred ChhhHHHHHHHHHHHhhcccccChhhHHhccccCceEEEEe
Q psy1142 200 HPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV 240 (442)
Q Consensus 200 ~~~~~~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~ 240 (442)
+.+.+..+.+|+-+|-.+.|.++-..+..+|++++.|.+..
T Consensus 18 ~~~~~~eI~~~l~r~A~lLD~~d~~~w~~lfteD~~y~~p~ 58 (186)
T 1wql_B 18 SLELQNAVEQFYYREAQLLDYQNYEAWLALLTQDIQYWMPI 58 (186)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHTTBCTTCCEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHcCcCHHHHHHHhhCCEEEEeec
Confidence 45678899999999999999988889999999999997543
No 274
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=51.77 E-value=11 Score=36.59 Aligned_cols=61 Identities=18% Similarity=0.216 Sum_probs=43.1
Q ss_pred cCCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCC
Q psy1142 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145 (442)
Q Consensus 81 ~~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gN 145 (442)
.+...|..+.+.++ +..+... .-..+.+|+.+.|.+|.|+.+++ ..+.++.+|+++.|-.+
T Consensus 260 ~~~~~l~~i~l~~~-i~~i~~~--aF~~c~~L~~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 260 QNCTALKTLNFYAK-VKTVPYL--LCSGCSNLTKVVMDNSAIETLEP-RVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TTCTTCCEEEECCC-CSEECTT--TTTTCTTCCEEEECCTTCCEECT-TTTTTCTTCCEEECCTT
T ss_pred ceeehhcccccccc-ceecccc--ccccccccccccccccccceehh-hhhcCCCCCCEEEcCcc
Confidence 34567888888654 5555421 11267899999999998887764 46778889999998644
No 275
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=51.61 E-value=20 Score=34.95 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=32.9
Q ss_pred CCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCC
Q psy1142 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145 (442)
Q Consensus 83 ~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gN 145 (442)
...|+.+.+. +.++.+..-. =..+.+|+.++|.+| |+.+.+ ..+.++.+|+++.|-.+
T Consensus 287 c~~L~~i~l~-~~i~~I~~~a--F~~c~~L~~i~lp~~-v~~I~~-~aF~~C~~L~~i~ip~s 344 (394)
T 4gt6_A 287 CPALQDIEFS-SRITELPESV--FAGCISLKSIDIPEG-ITQILD-DAFAGCEQLERIAIPSS 344 (394)
T ss_dssp CTTCCEEECC-TTCCEECTTT--TTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEECTT
T ss_pred ccccccccCC-CcccccCcee--ecCCCCcCEEEeCCc-ccEehH-hHhhCCCCCCEEEECcc
Confidence 4567777775 4455553211 114667777777654 544443 34566667777777443
No 276
>3k0z_A Putative polyketide cyclase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS lipoprotein; HET: NHE; 1.91A {Bacillus cereus}
Probab=50.66 E-value=30 Score=29.13 Aligned_cols=33 Identities=15% Similarity=0.179 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhcccccChhhHHhccccCceEE
Q psy1142 205 DILRAFLEQYFALFDTESRAGLIDAYHENAQYS 237 (442)
Q Consensus 205 ~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fS 237 (442)
+.-.+.+++||..|+.+|-..+..+|+++..+.
T Consensus 34 ~~n~~~v~~~~~a~~~~d~~~l~~~~a~D~v~~ 66 (159)
T 3k0z_A 34 TEMVHAAQRFYAFWDTGKEELIPQTVTENFFDH 66 (159)
T ss_dssp HHHHHHHHHHHHHHHHCCGGGHHHHEEEEEEES
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHcCCCeEEe
Confidence 345677899999999888889999999998763
No 277
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=50.47 E-value=39 Score=23.17 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=29.4
Q ss_pred HHHHHHH-hCCCHHHHHHHHHhcCCCHHHHHHHHHhhh
Q psy1142 395 VKALSQV-SGMNLNFSEKCLNEVQWDYDQAVTIFNQLK 431 (442)
Q Consensus 395 v~~~~~~-Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~ 431 (442)
+..+... -.....-.+-||+.+++|+++|+....+..
T Consensus 8 v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~ 45 (49)
T 1otr_A 8 LSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEN 45 (49)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 3344444 677888899999999999999999988763
No 278
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15
Probab=49.76 E-value=75 Score=24.51 Aligned_cols=32 Identities=9% Similarity=0.223 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhcccccChhhHHhccccCceE
Q psy1142 205 DILRAFLEQYFALFDTESRAGLIDAYHENAQY 236 (442)
Q Consensus 205 ~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~f 236 (442)
+.+.+..++|+..+-.+|...|..+++++..|
T Consensus 6 ~~i~~l~~~~~~A~~~~D~~~l~~l~~~d~~~ 37 (123)
T 2r4i_A 6 DVILDCEKKLLTAIQNNDVESLEVLLHDDLLF 37 (123)
T ss_dssp HHHTHHHHHHHHHHHHTCHHHHHHHEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHhhhCcCeEE
Confidence 44555566777655555999999999997443
No 279
>1tuh_A BAL32A, hypothetical protein EGC068; unknown function; 1.85A {Uncultured bacterium} SCOP: d.17.4.11
Probab=48.40 E-value=11 Score=31.62 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHH
Q psy1142 206 ILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALR 285 (442)
Q Consensus 206 ~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~ 285 (442)
...+.+++||..|+.+|-..+..+|++++.+. .+.. ..+ ...+.|+++|.+++.
T Consensus 30 ~~~~~v~~~~~a~~~gD~~~l~~l~a~D~~~~--~~~~----~~~--------------------~g~~~G~~~i~~~~~ 83 (156)
T 1tuh_A 30 QNAETVRRGYAAFNSGDMKTLTELFDENASWH--TPGR----SRI--------------------AGDHKGREAIFAQFG 83 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEEEEE--ECSS----STT--------------------CEEEESHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHhcCCCEEEE--ccCC----CCc--------------------cceEcCHHHHHHHHH
Confidence 34566788888888889999999999998875 2211 000 012689999998887
Q ss_pred hC
Q psy1142 286 FL 287 (442)
Q Consensus 286 ~L 287 (442)
.+
T Consensus 84 ~~ 85 (156)
T 1tuh_A 84 RY 85 (156)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 280
>3ec9_A Uncharacterized NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.60A {Burkholderia thailandensis E264} SCOP: d.17.4.10
Probab=47.35 E-value=8.3 Score=31.54 Aligned_cols=30 Identities=10% Similarity=0.216 Sum_probs=25.2
Q ss_pred HHHHHHHhhcccccChhhHHhccccCceEE
Q psy1142 208 RAFLEQYFALFDTESRAGLIDAYHENAQYS 237 (442)
Q Consensus 208 ~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fS 237 (442)
.+-+++||..+..+|...+..+|++++.+.
T Consensus 15 ~~~v~~~~~a~~~gD~~~~~~l~a~D~~~~ 44 (140)
T 3ec9_A 15 YQIVADHYAASDRHDPAAMMADIAPAIEWT 44 (140)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCHHHHHHhcCCCeEEE
Confidence 345777888888889999999999999986
No 281
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=45.66 E-value=53 Score=31.41 Aligned_cols=42 Identities=10% Similarity=0.184 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHh-------CCCHHHHHHHHHhcCCCHHHHHHHHHh
Q psy1142 388 ILIKQNMVKALSQVS-------GMNLNFSEKCLNEVQWDYDQAVTIFNQ 429 (442)
Q Consensus 388 ~~~q~~mv~~~~~~T-------gmn~~~s~~cL~~~~Wd~~~A~~~F~~ 429 (442)
+++|++.|.+|.+.- .++-.+-.+.|.-.+||.++|.+.+.+
T Consensus 36 t~~q~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~~ 84 (320)
T 3q8g_A 36 TKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVE 84 (320)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 788888888886552 467889999999999999999999864
No 282
>3flj_A Uncharacterized protein conserved in bacteria WIT cystatin-like fold; YP_168589.1; HET: MSE; 2.00A {Silicibacter pomeroyi dss-3}
Probab=45.61 E-value=19 Score=30.95 Aligned_cols=51 Identities=6% Similarity=0.065 Sum_probs=39.0
Q ss_pred HHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHhC
Q psy1142 208 RAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFL 287 (442)
Q Consensus 208 ~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~L 287 (442)
.+++++|+..+.++|-..|..+|+++++|.- +... +-+.|++.|..+|..+
T Consensus 21 ~~~v~~f~~A~~~gD~~aL~~LlA~Dvv~~s--P~~~---------------------------~p~~Gr~av~~~l~~~ 71 (155)
T 3flj_A 21 HPTIARMQEVVAKGDESLIHALLAEDVRFMP--PTYY---------------------------KTWTGRDPVAAVLGHV 71 (155)
T ss_dssp CHHHHHHHHHHTTTCHHHHHTTEEEEEEEEC--SSSS---------------------------CCEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHhcCCCEEEEC--CCCC---------------------------CCcCCHHHHHHHHHHH
Confidence 3567888889998899999999999999961 1000 1278999999998753
No 283
>3g8z_A Protein of unknown function with cystatin-like FO; NP_639274.1, snoal-like polyketide cyclase; HET: MSE; 1.90A {Xanthomonas campestris PV}
Probab=44.26 E-value=11 Score=31.38 Aligned_cols=53 Identities=17% Similarity=0.128 Sum_probs=36.5
Q ss_pred HHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHhC
Q psy1142 209 AFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFL 287 (442)
Q Consensus 209 ~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~L 287 (442)
+.+++||..+..+|...+..+|++++.+.. +.. .++ ...+.|+++|.+++..+
T Consensus 24 ~~v~~~~~a~~~gD~~~l~~l~a~D~v~~~--p~~----~~~--------------------~g~~~G~~~v~~~~~~~ 76 (148)
T 3g8z_A 24 DIAKSYITAIQTGDHATLGSIISPDVIWHQ--PGN----HQF--------------------SGTHRGMAVVGPMLGKM 76 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHEEEEEEEEE--CSS----STT--------------------CEEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHcCCCEEEEc--CCC----CCC--------------------CceEcCHHHHHHHHHHH
Confidence 446667777777799999999999998863 211 000 01268999999987754
No 284
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=43.13 E-value=28 Score=31.14 Aligned_cols=39 Identities=18% Similarity=0.309 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHH
Q psy1142 388 ILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIF 427 (442)
Q Consensus 388 ~~~q~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F 427 (442)
.+.-++.|++|.++ |...+-+..-|...+||.++|++.-
T Consensus 160 ~~~~eekV~~l~~M-Gf~~~~a~~AL~~~~wd~~~A~e~L 198 (201)
T 3k9o_A 160 SPEYTKKIENLCAM-GFDRNAVIVALSSKSWDVETATELL 198 (201)
T ss_dssp CHHHHHHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred cchhHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 34457788888665 9999999999999999999998753
No 285
>3f8h_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Silicibacter SP}
Probab=41.68 E-value=11 Score=31.79 Aligned_cols=74 Identities=20% Similarity=0.391 Sum_probs=46.8
Q ss_pred HHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHH----h
Q psy1142 211 LEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALR----F 286 (442)
Q Consensus 211 l~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~----~ 286 (442)
+++||..|+.+|-..+..+|++++.+. .+.. ....|+++|.+.+. .
T Consensus 24 v~~~~~a~n~~D~~~l~~l~a~D~v~~--~~~~----------------------------~~~~G~e~i~~~~~~~~~~ 73 (150)
T 3f8h_A 24 IARYFDAFNAGDTDGMLACLSEDVAHH--VNEG----------------------------NIRVGKEKFAAFCAHMSHC 73 (150)
T ss_dssp HHHHHHHHHHTCHHHHHTTEEEEEEEE--EETT----------------------------EEEESHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHcCCCeEEe--CCCC----------------------------cceeCHHHHHHHHHHHHHh
Confidence 677788888879999999999999853 2210 02789999999888 4
Q ss_pred CCCCccCCCCeeeeecCCCCC--eEEEEEeeeEE
Q psy1142 287 LPATKHDLLSFTCDCPLYTPG--LIQFSVCGLYE 318 (442)
Q Consensus 287 LP~t~H~~~sf~vD~~~~~~~--~l~i~V~G~f~ 318 (442)
+|.+.+++..+ + ...+. .+-++++|.+.
T Consensus 74 ~~~~~~~~~~~---~-~~~gd~v~~~~~~~gt~~ 103 (150)
T 3f8h_A 74 YKEELTDMVIF---A-TPDATRAAAEYTVNGTYL 103 (150)
T ss_dssp EEEEEEEEEEE---E-CTTSSEEEEEEEEEEEEC
T ss_pred CCccccceEEE---E-ecCCCEEEEEEEEEEEEe
Confidence 55433332110 0 11233 34467777765
No 286
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.46 E-value=68 Score=23.48 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=34.0
Q ss_pred HHHHHHHHH-HhCCCHHHHHHHHHhcCCCHHHHHHHHHhhhhc
Q psy1142 392 QNMVKALSQ-VSGMNLNFSEKCLNEVQWDYDQAVTIFNQLKAK 433 (442)
Q Consensus 392 ~~mv~~~~~-~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~ 433 (442)
++.+.+|++ .-.|..+--+.-|+.+++|+++|+..+.++...
T Consensus 19 ~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~ 61 (67)
T 2dhy_A 19 NQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLE 61 (67)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Confidence 344555544 458999999999999999999999999988753
No 287
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=41.27 E-value=89 Score=23.37 Aligned_cols=40 Identities=18% Similarity=0.400 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHhcCCCHHHHHHHHHh
Q psy1142 390 IKQNMVKALSQVSGMN-LNFSEKCLNEVQWDYDQAVTIFNQ 429 (442)
Q Consensus 390 ~q~~mv~~~~~~Tgmn-~~~s~~cL~~~~Wd~~~A~~~F~~ 429 (442)
.+|.++.++.+.||.+ +++=...|..++-|+..|+....+
T Consensus 23 ~~q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~ 63 (80)
T 1vdl_A 23 HQQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTA 63 (80)
T ss_dssp CHHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhc
Confidence 3777999999999996 778889999999999999998876
No 288
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=39.77 E-value=37 Score=27.87 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHH
Q psy1142 392 QNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFN 428 (442)
Q Consensus 392 ~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~ 428 (442)
++.|.+|.. -|...+-+.+.|..++||.++|+..-.
T Consensus 79 e~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L~ 114 (126)
T 2lbc_A 79 EEIVAIITS-MGFQRNQAIQALRATNNNLERALDWIF 114 (126)
T ss_dssp HHHHHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 346777776 499999999999999999999987654
No 289
>3ff2_A Uncharacterized cystatin fold protein (YP_497570. NTF2 superfamily; structural genomics; 1.90A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=39.43 E-value=15 Score=29.06 Aligned_cols=29 Identities=7% Similarity=0.085 Sum_probs=24.1
Q ss_pred HHHHHHHhhcccccChhhHHhccccCceE
Q psy1142 208 RAFLEQYFALFDTESRAGLIDAYHENAQY 236 (442)
Q Consensus 208 ~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~f 236 (442)
.+.+++||..|..+|-..+..+|+++...
T Consensus 5 ~~~v~~~~~a~n~~D~~~~~~~~a~D~v~ 33 (117)
T 3ff2_A 5 LETAKAMIAAYNAQDVDTYVSYMTDDACE 33 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHcccCHHHHHHhcCCcEEE
Confidence 35678888888888889999999999765
No 290
>4gb5_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, snoal-like domain, unknown function; HET: PGE; 1.55A {Kribbella flavida}
Probab=38.82 E-value=10 Score=31.94 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhcccccChhhHH-hccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHH
Q psy1142 204 RDILRAFLEQYFALFDTESRAGLI-DAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILR 282 (442)
Q Consensus 204 ~~~~~~Fl~~yf~~~D~~~R~~L~-~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~ 282 (442)
+..+.+.+.+|....|..|-..|. .+|++++.+.+.-..... ....|.++|++
T Consensus 10 r~~I~~L~~rY~~~~D~~d~~~l~~~~ft~Da~~d~~~~~g~~--------------------------~~~~g~~~~~~ 63 (159)
T 4gb5_A 10 RAEIIELFGRYADIADLKEFTDLPRRVHTDPLTIDFESVTGMP--------------------------PMTVPLSDYGA 63 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSHHHHHEEEEEEEECHHHHCCC--------------------------CEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHhhCcCCEEEEecCCCCCc--------------------------ccccHHHHHHH
Confidence 456788899999999996667775 589999987532211000 02568888888
Q ss_pred HHH----hCCCCccCCCCeeeeecC
Q psy1142 283 ALR----FLPATKHDLLSFTCDCPL 303 (442)
Q Consensus 283 ~l~----~LP~t~H~~~sf~vD~~~ 303 (442)
.+. .++.|.|-++...|++-.
T Consensus 64 ~~~~~~~~~~~t~H~~~n~~I~vdg 88 (159)
T 4gb5_A 64 ALRASFGAFSATHHAITGHVVTIDS 88 (159)
T ss_dssp HHHHHHTTCSEEEEEEEEEEEEEET
T ss_pred HHHHhccCCceEEEecCCceEEEcC
Confidence 765 466789988887777643
No 291
>2gex_A SNOL; alpha+beta barrel, oxidoreductase; 2.50A {Streptomyces nogalater} SCOP: d.17.4.9
Probab=38.75 E-value=26 Score=28.96 Aligned_cols=31 Identities=6% Similarity=0.065 Sum_probs=24.7
Q ss_pred HHHHHHHHhhcccccChhhHHhccccCceEE
Q psy1142 207 LRAFLEQYFALFDTESRAGLIDAYHENAQYS 237 (442)
Q Consensus 207 ~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fS 237 (442)
..+.+++||..++.+|...+..+|+++..+.
T Consensus 6 ~~~~v~~~~~a~~~~d~~~~~~~~a~D~v~~ 36 (152)
T 2gex_A 6 NKERCLEMVAAWNRWDVSGVVAHWAPDVVHY 36 (152)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHcCCCeEEe
Confidence 3455777787787778889999999998874
No 292
>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9
Probab=38.33 E-value=22 Score=29.75 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=25.2
Q ss_pred HHHHHHHHhhcccccChhhHHhccccCceEE
Q psy1142 207 LRAFLEQYFALFDTESRAGLIDAYHENAQYS 237 (442)
Q Consensus 207 ~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fS 237 (442)
..+.+++||..|+.+|...+..+|+++..+.
T Consensus 6 ~~~~v~~~~~a~~~~D~~~~~~~~a~D~v~~ 36 (158)
T 2gey_A 6 RKALCLEMVAAWNRWDLSGIIKHWSPDIVHY 36 (158)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHcCCCeEEe
Confidence 3456778888888878889999999998875
No 293
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=38.11 E-value=15 Score=25.43 Aligned_cols=21 Identities=5% Similarity=0.297 Sum_probs=19.6
Q ss_pred CHHHHHHHHHhhhhcCCCCcc
Q psy1142 419 DYDQAVTIFNQLKAKNALPSE 439 (442)
Q Consensus 419 d~~~A~~~F~~l~~~~~iP~e 439 (442)
|..+|++.-+.|+..|.||+.
T Consensus 8 Dv~RaiELle~lq~sgevp~~ 28 (53)
T 1zl8_A 8 DVQRILELMEHVQKTGEVNNA 28 (53)
T ss_dssp HHHHHHHHHHHHGGGSSSTHH
T ss_pred HHHHHHHHHHHHHHcCCCCcH
Confidence 789999999999999999985
No 294
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0
Probab=37.50 E-value=1.4e+02 Score=23.87 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhcccccChhhHHhccccCceE
Q psy1142 205 DILRAFLEQYFALFDTESRAGLIDAYHENAQY 236 (442)
Q Consensus 205 ~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~f 236 (442)
+.+.+-.++|+..+-.+|...|..+|+++..|
T Consensus 14 ~~I~~l~~~~~~A~~~~D~~~l~~L~~~d~~~ 45 (134)
T 3fsd_A 14 DDIAFYEERLRAAMLTGDLKGLETLLADDLAF 45 (134)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHhhcCCCEEE
Confidence 34666677888777777999999999998665
No 295
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=36.96 E-value=9.5 Score=25.94 Aligned_cols=32 Identities=9% Similarity=0.144 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHH
Q psy1142 394 MVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTI 426 (442)
Q Consensus 394 mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~ 426 (442)
-|.++... |....-+.+.|..++||.++|..-
T Consensus 7 aI~rL~~m-GF~~~~a~~Al~a~~~n~e~A~~~ 38 (47)
T 1dv0_A 7 AIERLKAL-GFPESLVIQAYFACEKNENLAANF 38 (47)
T ss_dssp HHTTTTTT-TCCHHHHHHHHTTTTSCHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 44555544 889999999999999999999754
No 296
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=36.92 E-value=31 Score=33.53 Aligned_cols=59 Identities=8% Similarity=0.151 Sum_probs=36.5
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gN 145 (442)
....|+++.+.++-. .+..- .-..+++|+.+.+. +.++.+.+ ..+.++.+|+++.|..|
T Consensus 263 ~c~~L~~i~lp~~~~-~I~~~--aF~~c~~L~~i~l~-~~i~~I~~-~aF~~c~~L~~i~lp~~ 321 (394)
T 4gt6_A 263 SCAYLASVKMPDSVV-SIGTG--AFMNCPALQDIEFS-SRITELPE-SVFAGCISLKSIDIPEG 321 (394)
T ss_dssp TCSSCCEEECCTTCC-EECTT--TTTTCTTCCEEECC-TTCCEECT-TTTTTCTTCCEEECCTT
T ss_pred ecccccEEecccccc-eecCc--ccccccccccccCC-CcccccCc-eeecCCCCcCEEEeCCc
Confidence 346678888865543 33211 11256788888886 45655553 45677778888888654
No 297
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=36.68 E-value=34 Score=27.63 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=25.5
Q ss_pred HHHHHHhCC-CHHHHHHHHHhcCCCHHHHHHHHHh
Q psy1142 396 KALSQVSGM-NLNFSEKCLNEVQWDYDQAVTIFNQ 429 (442)
Q Consensus 396 ~~~~~~Tgm-n~~~s~~cL~~~~Wd~~~A~~~F~~ 429 (442)
.+|.. -|. +.+-+.+.|..++||.++|+.....
T Consensus 71 ~qL~e-MGF~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 71 QQLRD-MGIQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp HHHHT-TTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 44433 354 6789999999999999999987653
No 298
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=36.63 E-value=14 Score=36.03 Aligned_cols=55 Identities=13% Similarity=0.025 Sum_probs=29.3
Q ss_pred CCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCC
Q psy1142 84 PDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145 (442)
Q Consensus 84 ~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gN 145 (442)
..+..+.+..+.|..-. -..+.+|+.+.+.+| ++.+++ ..+.++.+|+++.|..+
T Consensus 276 ~~l~~~~~~~~~i~~~~-----F~~~~~L~~i~l~~~-i~~I~~-~aF~~c~~L~~i~lp~~ 330 (394)
T 4fs7_A 276 SGLKKVIYGSVIVPEKT-----FYGCSSLTEVKLLDS-VKFIGE-EAFESCTSLVSIDLPYL 330 (394)
T ss_dssp TTCCEEEECSSEECTTT-----TTTCTTCCEEEECTT-CCEECT-TTTTTCTTCCEECCCTT
T ss_pred cccceeccCceeecccc-----ccccccccccccccc-cceech-hhhcCCCCCCEEEeCCc
Confidence 44555555554432211 124667777777654 554443 34556667777777433
No 299
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=36.39 E-value=46 Score=31.00 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHH
Q psy1142 388 ILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTI 426 (442)
Q Consensus 388 ~~~q~~mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~ 426 (442)
.+.-.+.|++|.+. |.+.+-+..-|...+||.++|++.
T Consensus 212 ~~~~~~~v~~l~~m-gf~~~~~~~al~~~nWd~~~A~e~ 249 (253)
T 3e46_A 212 SPEYTKKIENLCAA-GFDRNAVIVALSSKSWDVETATEL 249 (253)
T ss_dssp CHHHHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 33446788888665 999999999999999999999875
No 300
>3hk4_A MLR7391 protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, lyase; HET: MSE; 1.96A {Mesorhizobium loti}
Probab=35.55 E-value=94 Score=25.52 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=37.0
Q ss_pred CcCChhhHHHHHHHHHHHhhcccccCh-hhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhcc
Q psy1142 197 FLCHPEARDILRAFLEQYFALFDTESR-AGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSV 275 (442)
Q Consensus 197 f~~~~~~~~~~~~Fl~~yf~~~D~~~R-~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~ 275 (442)
|+.+.+.++++.+|++ .+..++- ..|.++|+++++|. -+..|.. . -..
T Consensus 16 ~~~~~~~kevv~r~~e----~~~~gd~~~~l~~lya~D~v~~--dp~~~~~-~------------------------~~~ 64 (136)
T 3hk4_A 16 YFQGMTIAEIAKDFTE----LLKQGDNAGAAEKYNADDIASY--EAMEGPM-A------------------------VSH 64 (136)
T ss_dssp ---CCCHHHHHHHHHH----HHHTTCHHHHHHHHEEEEEEEE--CSSCSTT-S------------------------EEE
T ss_pred HhccccHHHHHHHHHH----HHHcCCcHHHHHHHCCCCEEEE--cCCCCCc-c------------------------ccC
Confidence 4556667777766554 4444354 45789999999985 1111100 0 168
Q ss_pred CHHHHHHHHHhCC
Q psy1142 276 GKADILRALRFLP 288 (442)
Q Consensus 276 G~~~I~~~l~~LP 288 (442)
|+++|.+.+..+.
T Consensus 65 G~eai~~~~~~~~ 77 (136)
T 3hk4_A 65 GKEALRQKSQWWQ 77 (136)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999887654
No 301
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=35.06 E-value=20 Score=27.64 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHhhh
Q psy1142 407 NFSEKCLNEVQWDYDQAVTIFNQLK 431 (442)
Q Consensus 407 ~~s~~cL~~~~Wd~~~A~~~F~~l~ 431 (442)
+-|.+||++|+.|-++-..-|..-+
T Consensus 21 ~~S~kCL~~n~yDr~~C~~yF~~Yk 45 (85)
T 2lqt_A 21 DASTRCLDENNYDRERCSTYFLRYK 45 (85)
T ss_dssp HHHHHHHHHTTTCTTTTHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHH
Confidence 4589999999999999888887654
No 302
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=41.28 E-value=8.1 Score=31.91 Aligned_cols=43 Identities=21% Similarity=0.369 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHhCCC-HHHHHHHHHhcCCCHHHHHHHHHhh
Q psy1142 388 ILIKQNMVKALSQVSGMN-LNFSEKCLNEVQWDYDQAVTIFNQL 430 (442)
Q Consensus 388 ~~~q~~mv~~~~~~Tgmn-~~~s~~cL~~~~Wd~~~A~~~F~~l 430 (442)
...+|.++.+|.+.||.+ +++=...|..++-|+..|+..+.+-
T Consensus 15 ~~~~Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~ 58 (129)
T 2lva_A 15 YFQGQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDE 58 (129)
Confidence 446778999999999999 9999999999999999999999874
No 303
>3grd_A Uncharacterized NTF2-superfamily protein; NP_977240.1, NTF2-superfamily protein with unknown function, structural genomics; HET: MSE; 1.25A {Bacillus cereus atcc 10987} SCOP: d.17.4.0
Probab=34.74 E-value=8.6 Score=31.10 Aligned_cols=30 Identities=10% Similarity=0.195 Sum_probs=25.4
Q ss_pred HHHHHHhhcccccChhhHHhccccCceEEE
Q psy1142 209 AFLEQYFALFDTESRAGLIDAYHENAQYSL 238 (442)
Q Consensus 209 ~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSl 238 (442)
+-+++||..+..+|...+..+|++++.+..
T Consensus 8 ~~v~~~~~a~~~~D~~~~~~l~a~D~~~~~ 37 (134)
T 3grd_A 8 EIIRSTYEGSASSNAKHLAEALSEKVEWTE 37 (134)
T ss_dssp HHHHTTTSSCHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCHHHHHHhcCCCeEEEe
Confidence 457888888888788999999999998863
No 304
>3kkg_A Putative snoal-like polyketide cyclase; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, lyase; HET: MSE PGE; 1.40A {Jannaschia SP}
Probab=33.13 E-value=25 Score=28.82 Aligned_cols=31 Identities=6% Similarity=-0.016 Sum_probs=26.0
Q ss_pred HHHHHHHHhh-cccccC--hhhHHhccccCceEE
Q psy1142 207 LRAFLEQYFA-LFDTES--RAGLIDAYHENAQYS 237 (442)
Q Consensus 207 ~~~Fl~~yf~-~~D~~~--R~~L~~~Y~~~a~fS 237 (442)
-.+.+++||. .|+.+| ...+..+|+++..+.
T Consensus 11 n~~~v~~~~~~~~~~~d~~~~~~~~~~a~d~~~~ 44 (146)
T 3kkg_A 11 NVETVLRLFDEGWGAQDGWRDVWRETMTPGFRSI 44 (146)
T ss_dssp HHHHHHGGGTTTSTTSTTHHHHHHHHEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHcCCCeEEe
Confidence 3566888998 898878 899999999998875
No 305
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=32.51 E-value=41 Score=24.81 Aligned_cols=24 Identities=17% Similarity=0.419 Sum_probs=21.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhhh
Q psy1142 409 SEKCLNEVQWDYDQAVTIFNQLKA 432 (442)
Q Consensus 409 s~~cL~~~~Wd~~~A~~~F~~l~~ 432 (442)
.+.||..|+.|..+--..|.+|++
T Consensus 14 iQ~CL~~N~yd~skCq~~id~L~e 37 (68)
T 1hp8_A 14 IQKCLQANSYMESKCQAVIQELRK 37 (68)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHH
Confidence 578999999999999999999875
No 306
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=32.02 E-value=46 Score=31.86 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=42.9
Q ss_pred CCCCccEEeCCCCCCCCCCCchhhhhccCCCcEEEcCCCCCCCchhhhhcCCCCCCCeEEecCCCCCC
Q psy1142 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149 (442)
Q Consensus 82 ~~~~L~~L~Ls~N~l~~l~~l~~l~~~~p~L~~L~Ls~N~I~~~~~L~~l~~l~~L~eL~L~gNPl~~ 149 (442)
....|+.+.+.++ ++.+.... -..+.+|+.+.+..+ ++.+.. ..+.++.+|+++.+.+|.+..
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~~a--F~~~~~l~~i~l~~~-i~~i~~-~aF~~c~~L~~i~l~~~~i~~ 300 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGSFL--LQNCTALKTLNFYAK-VKTVPY-LLCSGCSNLTKVVMDNSAIET 300 (379)
T ss_dssp TCSSCCEEEECTT-CCEECTTT--TTTCTTCCEEEECCC-CSEECT-TTTTTCTTCCEEEECCTTCCE
T ss_pred CCccceEEEcCCC-ccEeCccc--cceeehhcccccccc-ceeccc-cccccccccccccccccccce
Confidence 3467888888766 66554321 225778999998654 555543 356778899999998887764
No 307
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=31.74 E-value=67 Score=29.98 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHH---h----CCCHHHHHHHHHhcCCCHHHHHHHHHhh
Q psy1142 388 ILIKQNMVKALSQV---S----GMNLNFSEKCLNEVQWDYDQAVTIFNQL 430 (442)
Q Consensus 388 ~~~q~~mv~~~~~~---T----gmn~~~s~~cL~~~~Wd~~~A~~~F~~l 430 (442)
+++|++.+.+|.+. . .++-.+-.+.|.-..||.++|.+.+.+-
T Consensus 27 ~~~q~~~l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l~~~ 76 (296)
T 1aua_A 27 DSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENC 76 (296)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 55667777777543 2 3678999999999999999999887653
No 308
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=31.38 E-value=31 Score=21.92 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhhhcCCCCc
Q psy1142 420 YDQAVTIFNQLKAKNALPS 438 (442)
Q Consensus 420 ~~~A~~~F~~l~~~~~iP~ 438 (442)
|++|++.|......|.+|.
T Consensus 18 yDKAVaSfk~alk~~~~~~ 36 (37)
T 3s6n_M 18 YDKAVASFKHALKNGDICE 36 (37)
T ss_pred HHHHHHHHHHHHhcCCcCC
Confidence 8999999998777788874
No 309
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.69 E-value=63 Score=23.29 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCC-CHHHHHHHHHh
Q psy1142 394 MVKALSQVSGMNLNFSEKCLNEVQW-DYDQAVTIFNQ 429 (442)
Q Consensus 394 mv~~~~~~Tgmn~~~s~~cL~~~~W-d~~~A~~~F~~ 429 (442)
.|++|.. -|...+-|.+.|..++| |.++|+.-..+
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~~ 47 (64)
T 2crn_A 12 LLEPLLA-MGFPVHTALKALAATGRKTAEEALAWLHD 47 (64)
T ss_dssp SHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 5677776 69999999999999865 99999976554
No 310
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=29.76 E-value=31 Score=27.40 Aligned_cols=50 Identities=10% Similarity=0.155 Sum_probs=38.1
Q ss_pred HHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHHhCC
Q psy1142 209 AFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFLP 288 (442)
Q Consensus 209 ~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~~LP 288 (442)
+-++.||..+..+|-..|..+++++..|. .+. . -..|++++..++..+-
T Consensus 10 ~~v~~f~~A~~~gD~~~l~~lla~Dvv~~--~~~-----g------------------------~~~G~~~v~~~~~~~~ 58 (114)
T 3f40_A 10 DLVLEFIHALNTENFPAAKKRLNENFTFN--GPM-----G------------------------HREGSERYMNDMEKMK 58 (114)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTEEEEEEEE--ETT-----E------------------------EEESHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHhcCCCeEEE--CCC-----C------------------------cccCHHHHHHHHHHHH
Confidence 34566777888889999999999998875 221 0 1689999999998775
Q ss_pred C
Q psy1142 289 A 289 (442)
Q Consensus 289 ~ 289 (442)
.
T Consensus 59 ~ 59 (114)
T 3f40_A 59 F 59 (114)
T ss_dssp C
T ss_pred h
Confidence 5
No 311
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=29.68 E-value=29 Score=22.44 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHhhhh
Q psy1142 409 SEKCLNEVQWDYDQAVTIFNQLKA 432 (442)
Q Consensus 409 s~~cL~~~~Wd~~~A~~~F~~l~~ 432 (442)
.+.||..|+.|..+--..|.+|++
T Consensus 10 ~q~CL~~n~~d~skCq~~id~l~~ 33 (38)
T 1ei0_A 10 IQKCLQANSYLESKCQAVIQELKK 33 (38)
T ss_dssp HHHHHHHTTTCGGGTHHHHHHHHH
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHH
Confidence 578999999999999999988764
No 312
>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*
Probab=27.09 E-value=37 Score=32.51 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhcccccChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHHH
Q psy1142 206 ILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALR 285 (442)
Q Consensus 206 ~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l~ 285 (442)
+.+.=+.+||..++.+|=..+..+|.++++.- .++. .-.+|+++|..++.
T Consensus 193 i~~~tVl~Y~e~lNa~Df~a~aaLFA~Dg~Le----------pPf~--------------------~PIvGreAI~~y~~ 242 (323)
T 3mg1_A 193 VTNATVLNYMDNLNANDFDTLIELFTSDGALQ----------PPFQ--------------------RPIVGKENVLRFFR 242 (323)
T ss_dssp BCCHHHHHHHHHHHTTCHHHHHTTEEEEEEEE----------CTTS--------------------CCEESHHHHHHHHH
T ss_pred cchHHHHHHHHHhcccCHHHHHHHccCCCeeC----------CCCC--------------------CCccCHHHHHHHHH
Confidence 33455889999999989999999999999863 1211 13899999999998
Q ss_pred h
Q psy1142 286 F 286 (442)
Q Consensus 286 ~ 286 (442)
.
T Consensus 243 ~ 243 (323)
T 3mg1_A 243 E 243 (323)
T ss_dssp H
T ss_pred H
Confidence 4
No 313
>1tp6_A Hypothetical protein PA1314; structural genomics, alpha-beta sandwich, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.12
Probab=26.28 E-value=2.5e+02 Score=22.43 Aligned_cols=109 Identities=13% Similarity=0.074 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhccccc-ChhhHHhccccCceEEEEeecCCCCCcchhhhcccCcccccCCChhhhhhhhccCHHHHHHHH
Q psy1142 206 ILRAFLEQYFALFDTE-SRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRAL 284 (442)
Q Consensus 206 ~~~~Fl~~yf~~~D~~-~R~~L~~~Y~~~a~fSls~~~~~~~~~~~~~Y~~~sRNl~~~~~~~~r~~~l~~G~~~I~~~l 284 (442)
.+..+++++|...-.. |-+.|+..|+++..+. + |. . ...|.+++.+.|
T Consensus 11 ~~~~~ie~W~~~~~~~~dl~~l~a~~a~d~~mv---~--p~---G-----------------------~~~g~~~~~~~~ 59 (128)
T 1tp6_A 11 HAHVAIRDWLAGDSRADALDALMARFAEDFSMV---T--PH---G-----------------------VVLDKTALGELF 59 (128)
T ss_dssp HHHHHHHHHHHTCCCTTHHHHHHTTEEEEEEEE---C--TT---S-----------------------CEEEHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHhHHHHHHHhcCCCEEEE---C--CC---C-----------------------eECCHHHHHHHH
Confidence 3557888888755442 5677899999998873 2 11 0 278999999999
Q ss_pred HhCCCCccCCCCeeeeecC--CCCCeEEEEEeeeEEEec-CCCCCCCCCeeeEEEEEEEEeCCCC--ceEEEcce
Q psy1142 285 RFLPATKHDLLSFTCDCPL--YTPGLIQFSVCGLYEEIT-TGTKNKSKLIRAFNRAFLLVPRSGG--GFAITNDQ 354 (442)
Q Consensus 285 ~~LP~t~H~~~sf~vD~~~--~~~~~l~i~V~G~f~e~~-~~~~~~~~~~r~F~RtFvl~p~~~~--~~~I~ND~ 354 (442)
...=....++.-.+-|+.. ..+..++ |+ |.|.. .+ .......+ |.++....+| .|.++-+.
T Consensus 60 ~~~~g~~pgl~i~i~~l~~~~~~~d~~v--v~--y~~~~~~~----~~~~~rrs-T~v~~~~~~g~~~W~~lHET 125 (128)
T 1tp6_A 60 RSKGGTRPGLRIEIDGESLLASGVDGAT--LA--YREIQSDA----AGRSERLS-TVVLHRDDEGRLYWRHLQET 125 (128)
T ss_dssp HHHTTCSTTCEEEEEEEEEEEEETTEEE--EE--EEEEEEET----TEEEEEEE-EEEEEECTTCCEEEEEEEEE
T ss_pred HHhhCCCCCeEEEEEEEEEEeecCCEEE--EE--EEEEeccC----CceeEEEE-EEEEEeCCCCCEEEEEEEEE
Confidence 8766555553322223333 1233333 23 33321 11 11223334 6666455445 38887765
No 314
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=25.30 E-value=2.8e+02 Score=22.73 Aligned_cols=32 Identities=0% Similarity=-0.059 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcccccChhhHHhccccCceE
Q psy1142 205 DILRAFLEQYFALFDTESRAGLIDAYHENAQY 236 (442)
Q Consensus 205 ~~~~~Fl~~yf~~~D~~~R~~L~~~Y~~~a~f 236 (442)
+.+.+.+++|...+..+|...+..+|+++.++
T Consensus 12 ~eI~~~~~~~~~Ai~~gD~~~~~~l~~~dv~~ 43 (143)
T 2f86_B 12 QDIVRVTQTLLDAISCKDFETYTRLCDTSMTC 43 (143)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHEEEEEEE
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHhcCCCEEE
Confidence 56778899999888888999999999999776
No 315
>3f9s_A Putative polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.76A {Acidithiobacillus ferrooxidans atcc 23}
Probab=24.90 E-value=46 Score=27.06 Aligned_cols=27 Identities=7% Similarity=0.038 Sum_probs=20.6
Q ss_pred HHHHHHhh-cccccChhhHHhccccCce
Q psy1142 209 AFLEQYFA-LFDTESRAGLIDAYHENAQ 235 (442)
Q Consensus 209 ~Fl~~yf~-~~D~~~R~~L~~~Y~~~a~ 235 (442)
+.+++||. .|+.+|...+..+|+++..
T Consensus 10 ~~v~~~~~~~~~~~d~~~~~~~~a~d~~ 37 (146)
T 3f9s_A 10 EILTQFTREVWSEGNIEASDKYIAPKYT 37 (146)
T ss_dssp HHHHHHHHHHTTTCCGGGHHHHEEEEEE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHcCCCee
Confidence 44566664 6776688889999999988
No 316
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.37 E-value=1.8e+02 Score=20.24 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCCHHHHHHHHHhhh
Q psy1142 394 MVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQLK 431 (442)
Q Consensus 394 mv~~~~~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l~ 431 (442)
++.+|...==.+.+--.+.|..++||.++|+..-..+.
T Consensus 12 ~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~ 49 (54)
T 2cp8_A 12 LMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLS 49 (54)
T ss_dssp HHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 45555544334889999999999999999988766543
No 317
>2gbw_B Biphenyl 2,3-dioxygenase beta subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_B* 2ckf_B
Probab=20.39 E-value=68 Score=27.47 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=34.8
Q ss_pred ChhhHHHHHHHHHHHhhcccccChhhHH-hccccCceEEEE
Q psy1142 200 HPEARDILRAFLEQYFALFDTESRAGLI-DAYHENAQYSLV 239 (442)
Q Consensus 200 ~~~~~~~~~~Fl~~yf~~~D~~~R~~L~-~~Y~~~a~fSls 239 (442)
+.+.+..+.+|+-+|-.+.|.++-..+. .+|++++.|.+.
T Consensus 9 ~~~~~~~I~~~l~rya~~lD~~d~d~w~~~lfteD~~y~~p 49 (174)
T 2gbw_B 9 TPDVHYDIEAHYRAEVRMFQTGQYREWLQGMVAEDIHYWMP 49 (174)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhccccHHHHHHhhccCCEEEEee
Confidence 4557788999999999999998888999 999999998643
Done!