Your job contains 1 sequence.
>psy1142
RIKTVTNHTLIVLVSSATPYVELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEA
NMFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHN
NIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPI
VFDLEDNIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV
TQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCD
CPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSA
TPEQAEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDY
DQAVTIFNQLKAKNALPSEAFI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1142
(442 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-030131-2585 - symbol:nxf1 "nuclear RNA expo... 727 6.7e-72 1
RGD|62014 - symbol:Nxf1 "nuclear RNA export factor 1" spe... 725 1.1e-71 1
UNIPROTKB|O88984 - symbol:Nxf1 "Nuclear RNA export factor... 725 1.1e-71 1
MGI|MGI:1858330 - symbol:Nxf1 "nuclear RNA export factor ... 716 9.9e-71 1
UNIPROTKB|J9NV67 - symbol:NXF1 "Uncharacterized protein" ... 714 1.6e-70 1
UNIPROTKB|Q1RMS5 - symbol:NXF1 "Nuclear RNA export factor... 713 2.1e-70 1
UNIPROTKB|Q9UBU9 - symbol:NXF1 "Nuclear RNA export factor... 710 4.3e-70 1
UNIPROTKB|I3LNX4 - symbol:NXF1 "Uncharacterized protein" ... 709 5.5e-70 1
UNIPROTKB|E2QVI8 - symbol:NXF1 "Uncharacterized protein" ... 694 2.1e-68 1
UNIPROTKB|F6XRT0 - symbol:NXF1 "Uncharacterized protein" ... 692 3.5e-68 1
UNIPROTKB|F1RYG7 - symbol:NXF2B "Uncharacterized protein"... 641 8.8e-63 1
UNIPROTKB|F1PDV5 - symbol:LOC492026 "Uncharacterized prot... 637 2.3e-62 1
UNIPROTKB|Q9GZY0 - symbol:NXF2 "Nuclear RNA export factor... 635 3.8e-62 1
UNIPROTKB|G3X6I2 - symbol:NXF2 "Uncharacterized protein" ... 612 1.0e-59 1
UNIPROTKB|F1RYG3 - symbol:F1RYG3 "Uncharacterized protein... 609 2.2e-59 1
UNIPROTKB|I3LSC9 - symbol:LOC100622292 "Uncharacterized p... 609 2.2e-59 1
FB|FBgn0003321 - symbol:sbr "small bristles" species:7227... 592 1.4e-57 1
UNIPROTKB|E9PIN3 - symbol:NXF1 "Nuclear RNA export factor... 591 1.7e-57 1
UNIPROTKB|F1PG81 - symbol:F1PG81 "Uncharacterized protein... 398 5.0e-56 2
ZFIN|ZDB-GENE-060825-299 - symbol:zgc:153681 "zgc:153681"... 575 8.6e-56 1
RGD|1566170 - symbol:Nxf7 "nuclear RNA export factor 7" s... 568 4.8e-55 1
RGD|1559530 - symbol:Nxf2 "nuclear RNA export factor 2" s... 340 5.4e-54 2
UNIPROTKB|E2RQU8 - symbol:LOC492024 "Uncharacterized prot... 545 1.3e-52 1
UNIPROTKB|J9NUV9 - symbol:LOC492026 "Uncharacterized prot... 366 2.3e-50 2
UNIPROTKB|G3X7I4 - symbol:G3X7I4 "Uncharacterized protein... 403 7.4e-40 2
UNIPROTKB|J9NRI2 - symbol:NXF3 "Uncharacterized protein" ... 422 1.4e-39 1
UNIPROTKB|Q5JRM6 - symbol:NXF2B "Nuclear RNA export facto... 409 3.4e-38 1
UNIPROTKB|K7GQF8 - symbol:LOC100622292 "Uncharacterized p... 390 3.5e-36 1
RGD|1564923 - symbol:Nxf3 "nuclear RNA export factor 3" s... 384 2.2e-35 1
UNIPROTKB|E1BAP0 - symbol:NXF3 "Uncharacterized protein" ... 349 1.9e-33 2
UNIPROTKB|J9P5X4 - symbol:NXF3 "Uncharacterized protein" ... 357 1.1e-32 1
UNIPROTKB|H9GWD9 - symbol:NXF3 "Uncharacterized protein" ... 350 1.0e-31 1
WB|WBGene00003834 - symbol:nxf-1 species:6239 "Caenorhabd... 352 1.7e-31 1
UNIPROTKB|G5E5Z2 - symbol:G5E5Z2 "Uncharacterized protein... 330 2.1e-29 1
UNIPROTKB|Q9H4D5 - symbol:NXF3 "Nuclear RNA export factor... 297 6.0e-29 2
UNIPROTKB|F1MPI0 - symbol:NXF3 "Uncharacterized protein" ... 305 8.1e-28 2
UNIPROTKB|Q9H1B4 - symbol:NXF5 "Nuclear RNA export factor... 279 1.1e-26 2
UNIPROTKB|H0Y6A1 - symbol:NXF3 "Nuclear RNA export factor... 239 2.9e-22 2
UNIPROTKB|F1N016 - symbol:F1N016 "Uncharacterized protein... 272 2.6e-21 1
POMBASE|SPBC1921.03c - symbol:mex67 "mRNA export receptor... 263 4.2e-20 1
FB|FBgn0263232 - symbol:Nxf3 "Nuclear export factor 3" sp... 243 7.7e-18 1
UNIPROTKB|E9PE86 - symbol:NXF3 "Nuclear RNA export factor... 214 5.8e-17 1
CGD|CAL0005845 - symbol:MEX67 species:5476 "Candida albic... 194 1.6e-15 2
UNIPROTKB|P84149 - symbol:MEX67 "mRNA export factor MEX67... 194 1.6e-15 2
DICTYBASE|DDB_G0286455 - symbol:nxf "putative nuclear RNA... 215 4.1e-15 1
ASPGD|ASPL0000041522 - symbol:mexA species:162425 "Emeric... 155 1.8e-12 2
WB|WBGene00003835 - symbol:nxf-2 species:6239 "Caenorhabd... 182 3.4e-11 1
UNIPROTKB|Q9XVS8 - symbol:nxf-2 "Nuclear RNA export facto... 182 3.4e-11 1
SGD|S000006090 - symbol:MEX67 "Poly(A)RNA binding protein... 172 5.3e-11 2
UNIPROTKB|H0YDU0 - symbol:NXF1 "Nuclear RNA export factor... 141 5.7e-09 1
FB|FBgn0036640 - symbol:nxf2 "nuclear RNA export factor 2... 159 3.9e-08 1
FB|FBgn0051501 - symbol:nxf4 "nuclear export factor 4" sp... 148 9.9e-08 1
UNIPROTKB|F1N4T4 - symbol:F1N4T4 "Uncharacterized protein... 145 1.5e-06 2
>ZFIN|ZDB-GENE-030131-2585 [details] [associations]
symbol:nxf1 "nuclear RNA export factor 1"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006406 "mRNA export from
nucleus" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR001611
InterPro:IPR002075 InterPro:IPR005637 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR015245 Pfam:PF02136 Pfam:PF03943
Pfam:PF09162 ProDom:PD043466 PROSITE:PS51281 PROSITE:PS51450
SMART:SM00804 ZFIN:ZDB-GENE-030131-2585 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406
InterPro:IPR003603 SMART:SM00446 SUPFAM:SSF46934 InterPro:IPR018222
PROSITE:PS50177 KO:K14284 GeneTree:ENSGT00390000007539 CTD:10482
EMBL:BX465841 IPI:IPI00555399 RefSeq:XP_001923961.1
UniGene:Dr.77125 Ensembl:ENSDART00000077381 GeneID:323865
KEGG:dre:323865 NextBio:20808464 Bgee:F1Q7H6 Uniprot:F1Q7H6
Length = 642
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 160/449 (35%), Positives = 251/449 (55%)
Query: 1 RIKTVTNHTLIVLVSSATPYVELNNEIK----DKIKLVMAKRYNGDNKALDLSKFYADPD 56
RI + + V+++S P +++++K + +K MAKR++G +ALDL+ DPD
Sbjct: 200 RITDKDGYKVAVIMNSCPPPTLIHSDLKPADLEHLKQCMAKRFDGSQQALDLNNIRVDPD 259
Query: 57 FVEANMFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILY 116
V N+ V L+R N M +V II EN+P+L LNLS N+L+ + L+ + +P +KIL
Sbjct: 260 LVSQNIEVTLNRKNSMCAVIKIIEENIPELVCLNLSNNRLFRLDDLVDIIHKVPNLKILN 319
Query: 117 LAHNNIKDLATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQL 176
L+HN +K + NP F Y S +R+ FPKLLKLD L
Sbjct: 320 LSHNELKTERELDKLKGLKLVDLSLEG-NPLCHHFKIHADYISAIRERFPKLLKLDGHDL 378
Query: 177 PPPIVFDLEDNIE-LPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQ 235
PPPI FDL+D LP + S+ C E ++I+ FL+Q++ ++D+ +R L+DAYH+ A
Sbjct: 379 PPPIGFDLDDGPSTLPPSKASYFCSEEIKNIILCFLQQFYNVYDSGNRQPLLDAYHDGAT 438
Query: 236 YSLVV--TQGXXXXXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHD 293
+SL + SRN+ R+++P + L+ + +++ L LP T+HD
Sbjct: 439 FSLSIPFVSLNPSKSTLGEYQKDSRNIKRMKDPTTRYRLIKHTRLNVVAFLNELPKTQHD 498
Query: 294 LLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITND 353
+ SF D YT L+ F+VCG+++E+ G ++ RAF+R F+ VP G I ND
Sbjct: 499 IASFVVDVNTYTATLLAFTVCGVFKEMD-GKSRET--YRAFSRVFIAVPAGSTGLCIVND 555
Query: 354 QLFITSATPEQAEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCL 413
+LF+ +AT E+ +AF V + + S+PV +Q M+ A S SGMNL +S+KCL
Sbjct: 556 ELFVRNATTEEIRRAF---VAPAPTPSSSPVPTLSAHQQEMLAAFSLKSGMNLEWSQKCL 612
Query: 414 NEVQWDYDQAVTIFNQLKAKNALPSEAFI 442
+ WD+++A IF LKA+ +P AF+
Sbjct: 613 QDNDWDFERAAQIFTGLKAQGKIPDVAFV 641
>RGD|62014 [details] [associations]
symbol:Nxf1 "nuclear RNA export factor 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO;TAS] [GO:0003729 "mRNA
binding" evidence=IEA;ISO] [GO:0005487 "nucleocytoplasmic
transporter activity" evidence=IEA;ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005643 "nuclear pore" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006405 "RNA export from
nucleus" evidence=ISO] [GO:0006406 "mRNA export from nucleus"
evidence=IEA;ISO] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IEA;ISO]
[GO:0042405 "nuclear inclusion body" evidence=IEA;ISO]
InterPro:IPR001611 InterPro:IPR002075 InterPro:IPR005637
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR015245
Pfam:PF02136 Pfam:PF03943 Pfam:PF09162 ProDom:PD043466
PROSITE:PS50102 PROSITE:PS51281 PROSITE:PS51450 SMART:SM00804
RGD:62014 GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005643 GO:GO:0003723 InterPro:IPR003603
SMART:SM00446 SUPFAM:SSF46934 GO:GO:0042405 InterPro:IPR018222
PROSITE:PS50177 GO:GO:0016973 eggNOG:NOG324438 KO:K14284
GO:GO:0005487 CTD:10482 HOGENOM:HOG000236269 HOVERGEN:HBG013199
OrthoDB:EOG4PK27D EMBL:AF093139 IPI:IPI00214378 RefSeq:NP_067590.1
UniGene:Rn.159847 ProteinModelPortal:O88984 SMR:O88984 STRING:O88984
PhosphoSite:O88984 PRIDE:O88984 GeneID:59087 KEGG:rno:59087
UCSC:RGD:62014 InParanoid:O88984 NextBio:611712 ArrayExpress:O88984
Genevestigator:O88984 GermOnline:ENSRNOG00000019069 Uniprot:O88984
Length = 618
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 163/438 (37%), Positives = 250/438 (57%)
Query: 11 IVLVSSATPYVELNNEIK----DKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPL 66
I++ SSA PY+ + NE+K +++KL+M+KRY+G +ALDL +DPD V N+ V L
Sbjct: 188 IIINSSAPPYI-VQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVL 246
Query: 67 DRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLA 126
+R M + II EN+P+L +LNLS N+LY + + S+ + P +KIL L+ N +K
Sbjct: 247 NRRGCMAAALRIIEENIPELLSLNLSNNRLYKLDDMSSIVQKAPNLKILNLSGNELKSEW 306
Query: 127 TIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLED 186
+ +NP + F +Q Y S +R+ FPKLL+LD +LPPPI FD+E
Sbjct: 307 EL-DKIKGLKLEELWLDRNPMCDTFLDQSTYISTIRERFPKLLRLDGHELPPPIAFDVEA 365
Query: 187 NIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGXXX 246
LP +GS+ + ++ FL+QY+A++D+ R GL+DAYH+ A SL
Sbjct: 366 PTMLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSTPSNPQN 425
Query: 247 --XXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLY 304
SRN+ +I++ + LL + +++ L LP T HD+ SF D
Sbjct: 426 PVRHNLAKYFNDSRNVKKIKDTTTRFRLLKHTRLNVVAFLNELPKTHHDVNSFVVDISAQ 485
Query: 305 TPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQ 364
T L+ FSV G+++E+ G K++ L RAF R F+ VP S G I ND+LF+ +A+PE+
Sbjct: 486 TSTLLCFSVNGVFKEVD-G-KSRDSL-RAFTRTFIAVPASNSGLCIVNDELFVRNASPEE 542
Query: 365 AEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAV 424
++AF+ S+ +S E +Q+M++A S SGMNL +S+KCL + WDY ++
Sbjct: 543 IQRAFAMPAPTPSSSPVPTLSQE---QQDMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSA 599
Query: 425 TIFNQLKAKNALPSEAFI 442
F LKAK +P AF+
Sbjct: 600 QAFTHLKAKGEIPEVAFM 617
>UNIPROTKB|O88984 [details] [associations]
symbol:Nxf1 "Nuclear RNA export factor 1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR001611 InterPro:IPR002075 InterPro:IPR005637
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR015245
Pfam:PF02136 Pfam:PF03943 Pfam:PF09162 ProDom:PD043466
PROSITE:PS50102 PROSITE:PS51281 PROSITE:PS51450 SMART:SM00804
RGD:62014 GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005643 GO:GO:0003723 InterPro:IPR003603
SMART:SM00446 SUPFAM:SSF46934 GO:GO:0042405 InterPro:IPR018222
PROSITE:PS50177 GO:GO:0016973 eggNOG:NOG324438 KO:K14284
GO:GO:0005487 CTD:10482 HOGENOM:HOG000236269 HOVERGEN:HBG013199
OrthoDB:EOG4PK27D EMBL:AF093139 IPI:IPI00214378 RefSeq:NP_067590.1
UniGene:Rn.159847 ProteinModelPortal:O88984 SMR:O88984
STRING:O88984 PhosphoSite:O88984 PRIDE:O88984 GeneID:59087
KEGG:rno:59087 UCSC:RGD:62014 InParanoid:O88984 NextBio:611712
ArrayExpress:O88984 Genevestigator:O88984
GermOnline:ENSRNOG00000019069 Uniprot:O88984
Length = 618
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 163/438 (37%), Positives = 250/438 (57%)
Query: 11 IVLVSSATPYVELNNEIK----DKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPL 66
I++ SSA PY+ + NE+K +++KL+M+KRY+G +ALDL +DPD V N+ V L
Sbjct: 188 IIINSSAPPYI-VQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVL 246
Query: 67 DRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLA 126
+R M + II EN+P+L +LNLS N+LY + + S+ + P +KIL L+ N +K
Sbjct: 247 NRRGCMAAALRIIEENIPELLSLNLSNNRLYKLDDMSSIVQKAPNLKILNLSGNELKSEW 306
Query: 127 TIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLED 186
+ +NP + F +Q Y S +R+ FPKLL+LD +LPPPI FD+E
Sbjct: 307 EL-DKIKGLKLEELWLDRNPMCDTFLDQSTYISTIRERFPKLLRLDGHELPPPIAFDVEA 365
Query: 187 NIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGXXX 246
LP +GS+ + ++ FL+QY+A++D+ R GL+DAYH+ A SL
Sbjct: 366 PTMLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSTPSNPQN 425
Query: 247 --XXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLY 304
SRN+ +I++ + LL + +++ L LP T HD+ SF D
Sbjct: 426 PVRHNLAKYFNDSRNVKKIKDTTTRFRLLKHTRLNVVAFLNELPKTHHDVNSFVVDISAQ 485
Query: 305 TPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQ 364
T L+ FSV G+++E+ G K++ L RAF R F+ VP S G I ND+LF+ +A+PE+
Sbjct: 486 TSTLLCFSVNGVFKEVD-G-KSRDSL-RAFTRTFIAVPASNSGLCIVNDELFVRNASPEE 542
Query: 365 AEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAV 424
++AF+ S+ +S E +Q+M++A S SGMNL +S+KCL + WDY ++
Sbjct: 543 IQRAFAMPAPTPSSSPVPTLSQE---QQDMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSA 599
Query: 425 TIFNQLKAKNALPSEAFI 442
F LKAK +P AF+
Sbjct: 600 QAFTHLKAKGEIPEVAFM 617
>MGI|MGI:1858330 [details] [associations]
symbol:Nxf1 "nuclear RNA export factor 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005487 "nucleocytoplasmic transporter activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005643 "nuclear pore" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006405 "RNA export from nucleus"
evidence=IDA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0006810 "transport" evidence=IEA] [GO:0016973 "poly(A)+ mRNA
export from nucleus" evidence=IPI] [GO:0042405 "nuclear inclusion
body" evidence=IDA] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR001611 InterPro:IPR002075 InterPro:IPR005637
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR015245
Pfam:PF02136 Pfam:PF03943 Pfam:PF09162 ProDom:PD043466
PROSITE:PS50102 PROSITE:PS51281 PROSITE:PS51450 SMART:SM00804
MGI:MGI:1858330 GO:GO:0005737 GO:GO:0000166 GO:GO:0016607
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005643 EMBL:CH466612
InterPro:IPR003603 SMART:SM00446 SUPFAM:SSF46934 GO:GO:0042405
InterPro:IPR018222 PROSITE:PS50177 GO:GO:0016973 eggNOG:NOG324438
KO:K14284 GeneTree:ENSGT00390000007539 GO:GO:0005487 CTD:10482
HOGENOM:HOG000236269 HOVERGEN:HBG013199 OMA:RKYDKSW
OrthoDB:EOG4PK27D ChiTaRS:NXF1 EMBL:AF093140 EMBL:AK133883
EMBL:AK167518 EMBL:BC005594 IPI:IPI00115588 RefSeq:NP_058093.2
UniGene:Mm.7271 ProteinModelPortal:Q99JX7 SMR:Q99JX7 STRING:Q99JX7
PhosphoSite:Q99JX7 PaxDb:Q99JX7 PRIDE:Q99JX7
Ensembl:ENSMUST00000010241 GeneID:53319 KEGG:mmu:53319
InParanoid:Q3TJA5 NextBio:310117 Bgee:Q99JX7 Genevestigator:Q99JX7
GermOnline:ENSMUSG00000010097 Uniprot:Q99JX7
Length = 618
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 161/449 (35%), Positives = 259/449 (57%)
Query: 1 RIKTVTNHTLIVLVSSATPYVELNNEIK----DKIKLVMAKRYNGDNKALDLSKFYADPD 56
+I+ N + ++++++ P + NE+K +++KL+M+KRY+G+ +ALDL +DPD
Sbjct: 177 KIQDRENRRISIIINASAPPYTVQNELKPEQIEQLKLIMSKRYDGNQQALDLKGLRSDPD 236
Query: 57 FVEANMFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILY 116
V N+ V L+R + M + II EN+P+L +LNLS N+LY + + S+ + P +K L
Sbjct: 237 LVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSSNRLYKLDDMSSIVQKAPNLKTLN 296
Query: 117 LAHNNIKDLATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQL 176
L+ N +K + +NP + F +Q +Y S +R+ FPKLL+LD +L
Sbjct: 297 LSGNELKTEREL-DKIKGLKLEELWLDRNPMCDNFGDQSSYISAIRERFPKLLRLDGHEL 355
Query: 177 PPPIVFDLEDNIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQY 236
PPPI FD+E LP +GS+ + ++ FL+QY+ ++D+ R GL+ AYH+ A
Sbjct: 356 PPPISFDVEAPTMLPPCKGSYFGTENLKSLVLRFLQQYYVIYDSGDRQGLLYAYHDGACC 415
Query: 237 SLVVTQGXXX--XXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDL 294
SL + SRN+ +++EP ++ LL + +++ L LP T+HD+
Sbjct: 416 SLSIPYNPQNPVRKNLAEYVKDSRNVKKLKEPTQRFRLLKHTRLNVVAFLNELPKTQHDV 475
Query: 295 LSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQ 354
+F D T L+ FSV G+++E+ G K++ L RAF R F+ VP S G I ND+
Sbjct: 476 NAFVVDISAQTSTLLCFSVNGVFKEVD-G-KSRDSL-RAFTRTFIAVPASNSGLCIVNDE 532
Query: 355 LFITSATPEQAEKAFS-SQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCL 413
LF+ +A+PE+ ++AF+ S T S S T +S E +Q M++A S SGMNL +S+KCL
Sbjct: 533 LFVRNASPEEIQRAFAMSAPTPSSSPVPT-LSPE---QQEMLQAFSTQSGMNLEWSQKCL 588
Query: 414 NEVQWDYDQAVTIFNQLKAKNALPSEAFI 442
+ WDY ++ F LKAK +P AF+
Sbjct: 589 QDNNWDYTRSAQAFTLLKAKGEIPEVAFM 617
>UNIPROTKB|J9NV67 [details] [associations]
symbol:NXF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] Pfam:PF00560
InterPro:IPR001611 InterPro:IPR002075 InterPro:IPR005637
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR015245
Pfam:PF02136 Pfam:PF03943 Pfam:PF09162 ProDom:PD043466
PROSITE:PS51281 PROSITE:PS51450 SMART:SM00804 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006406 InterPro:IPR003603 SMART:SM00446 SUPFAM:SSF46934
InterPro:IPR018222 PROSITE:PS50177 GeneTree:ENSGT00390000007539
OMA:RKYDKSW EMBL:AAEX03011662 EMBL:AAEX03011663
Ensembl:ENSCAFT00000047922 Uniprot:J9NV67
Length = 623
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 159/442 (35%), Positives = 252/442 (57%)
Query: 7 NHTLIVLVSSATPYVELNNEIK----DKIKLVMAKRYNGDNKALDLSKFYADPDFVEANM 62
N + ++++S+ P + NE+K +++KL+M+KRY+G +ALDL +DPD V N+
Sbjct: 188 NRRISIIINSSVPPHSVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNI 247
Query: 63 FVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNI 122
V L+R + M + II EN+P+L +LNLS N+LY + + SL + P +KIL L+ N +
Sbjct: 248 DVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSLVQKAPNLKILNLSGNEL 307
Query: 123 KDLATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVF 182
K + NP + F +Q Y S +R+ FPKLL+LD +LPPPI F
Sbjct: 308 KSERELDKVKGLKLEELWLDG-NPLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAF 366
Query: 183 DLEDNIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV-- 240
D+E LP +GS+ ++++ FL+QY+A++D+ R L+DAYH+ A SL +
Sbjct: 367 DVEAPTMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPF 426
Query: 241 TQGXXXXXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCD 300
T SRN+ ++++P + LL + +++ L LP T+HD+ SF D
Sbjct: 427 TPQNPARSNLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVD 486
Query: 301 CPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSA 360
T L+ FSV G+++E+ G K++ L RAF R F+ VP S G I ND+LF+ +A
Sbjct: 487 ISAQTSTLLCFSVNGVFKEVD-G-KSRDSL-RAFTRTFVAVPASNSGLCIVNDELFVRNA 543
Query: 361 TPEQAEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDY 420
+ ++ ++AF+ S+ +S E +Q M++A S SGMNL +S+KCL + WDY
Sbjct: 544 SADEIQRAFAMPAPTPSSSPVPTLSPE---QQEMLQAFSTQSGMNLEWSQKCLQDNNWDY 600
Query: 421 DQAVTIFNQLKAKNALPSEAFI 442
++ F LKAK +P AF+
Sbjct: 601 TRSAQAFTHLKAKGEIPEVAFM 622
>UNIPROTKB|Q1RMS5 [details] [associations]
symbol:NXF1 "Nuclear RNA export factor 1" species:9913 "Bos
taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0042405 "nuclear inclusion body"
evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IEA] [GO:0005643 "nuclear pore" evidence=IEA] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001611 InterPro:IPR002075
InterPro:IPR005637 InterPro:IPR009060 InterPro:IPR012677
InterPro:IPR015245 Pfam:PF02136 Pfam:PF03943 Pfam:PF09162
ProDom:PD043466 PROSITE:PS50102 PROSITE:PS51281 PROSITE:PS51450
SMART:SM00804 GO:GO:0005737 GO:GO:0000166 GO:GO:0016607
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005643 InterPro:IPR003603
SMART:SM00446 SUPFAM:SSF46934 GO:GO:0042405 InterPro:IPR018222
PROSITE:PS50177 GO:GO:0016973 eggNOG:NOG324438 KO:K14284
GeneTree:ENSGT00390000007539 GO:GO:0005487 EMBL:BC114739
IPI:IPI00688512 RefSeq:NP_001069023.1 UniGene:Bt.20116
ProteinModelPortal:Q1RMS5 SMR:Q1RMS5 STRING:Q1RMS5 PRIDE:Q1RMS5
Ensembl:ENSBTAT00000012486 GeneID:512136 KEGG:bta:512136 CTD:10482
HOGENOM:HOG000236269 HOVERGEN:HBG013199 InParanoid:Q1RMS5
OMA:RKYDKSW OrthoDB:EOG4PK27D NextBio:20870258 Uniprot:Q1RMS5
Length = 620
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 160/442 (36%), Positives = 252/442 (57%)
Query: 7 NHTLIVLVSSATPYVELNNEIK----DKIKLVMAKRYNGDNKALDLSKFYADPDFVEANM 62
N + ++++S++P + NE+K +++KL+M+KRY+G +ALDL +DPD V N+
Sbjct: 185 NRRISIIINSSSPPHSVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNI 244
Query: 63 FVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNI 122
V L+R + M + II EN+P+L +LNLS NKLY + L S+ + P +KIL L+ N +
Sbjct: 245 DVVLNRRSCMAATLRIIEENIPELLSLNLSNNKLYRLDDLSSIVQKAPNLKILNLSGNEL 304
Query: 123 KDLATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVF 182
K + N + F +Q Y S VR+ FPKLL+LD +LPPPI F
Sbjct: 305 KSERELDKIKGLKLEELWLDG-NTLCDTFRDQSTYISAVRERFPKLLRLDGHELPPPIAF 363
Query: 183 DLEDNIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV-- 240
D+E LP +GS+ ++++ FL+QY+A++D+ R L+DAYH+ A SL +
Sbjct: 364 DVEAPTTLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPF 423
Query: 241 TQGXXXXXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCD 300
T SRN+ ++++P + LL + +++ L LP T+HD+ SF D
Sbjct: 424 TPQNPARSNLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDINSFVVD 483
Query: 301 CPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSA 360
T L+ FSV G+++E+ G K++ L RAF R F+ VP S G I ND+LF+ +A
Sbjct: 484 ISAQTSTLLCFSVNGVFKEVD-G-KSRDSL-RAFTRTFVAVPASNSGLCIVNDELFVRNA 540
Query: 361 TPEQAEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDY 420
+ ++ ++AF+ S+ +S E +Q M++A S SGMNL +S+KCL + WDY
Sbjct: 541 SADEIQRAFAMPAPTPSSSPVPTLSPE---QQEMLQAFSTQSGMNLEWSQKCLQDNNWDY 597
Query: 421 DQAVTIFNQLKAKNALPSEAFI 442
++ F LKAK +P AF+
Sbjct: 598 TRSAQAFTHLKAKGEIPEVAFM 619
>UNIPROTKB|Q9UBU9 [details] [associations]
symbol:NXF1 "Nuclear RNA export factor 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005487 "nucleocytoplasmic
transporter activity" evidence=IEA] [GO:0005643 "nuclear pore"
evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IEA] [GO:0042405 "nuclear inclusion body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006406 "mRNA export from nucleus"
evidence=IDA;TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] Reactome:REACT_71 Pfam:PF00560 InterPro:IPR001611
InterPro:IPR002075 InterPro:IPR005637 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR015245 Pfam:PF02136 Pfam:PF03943
Pfam:PF09162 ProDom:PD043466 PROSITE:PS50102 PROSITE:PS51281
PROSITE:PS51450 SMART:SM00804 GO:GO:0005829 GO:GO:0010467
GO:GO:0019048 GO:GO:0005654 GO:GO:0000166 GO:GO:0016607
EMBL:AP001160 EMBL:CH471076 Reactome:REACT_1675 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005643 TCDB:3.A.18.1.1 GO:GO:0006406
InterPro:IPR003603 SMART:SM00446 SUPFAM:SSF46934 GO:GO:0042405
InterPro:IPR018222 PROSITE:PS50177 GO:GO:0016973 eggNOG:NOG324438
KO:K14284 GO:GO:0005487 CTD:10482 HOGENOM:HOG000236269
HOVERGEN:HBG013199 OMA:RKYDKSW OrthoDB:EOG4PK27D EMBL:AJ132712
EMBL:AF112880 EMBL:AF126246 EMBL:AK304137 EMBL:AK027192
EMBL:BC004904 EMBL:BC028041 EMBL:U80073 IPI:IPI00033153
IPI:IPI00749024 RefSeq:NP_001074960.1 RefSeq:NP_006353.2
UniGene:Hs.523739 UniGene:Hs.601546 PDB:1FO1 PDB:1FT8 PDB:1GO5
PDB:1JKG PDB:1JN5 PDB:1KOH PDB:1KOO PDB:1OAI PDB:2Z5K PDB:2Z5M
PDB:3RW6 PDB:3RW7 PDBsum:1FO1 PDBsum:1FT8 PDBsum:1GO5 PDBsum:1JKG
PDBsum:1JN5 PDBsum:1KOH PDBsum:1KOO PDBsum:1OAI PDBsum:2Z5K
PDBsum:2Z5M PDBsum:3RW6 PDBsum:3RW7 ProteinModelPortal:Q9UBU9
SMR:Q9UBU9 IntAct:Q9UBU9 MINT:MINT-121360 STRING:Q9UBU9
PhosphoSite:Q9UBU9 DMDM:20139282 PaxDb:Q9UBU9 PeptideAtlas:Q9UBU9
PRIDE:Q9UBU9 DNASU:10482 Ensembl:ENST00000294172
Ensembl:ENST00000439713 Ensembl:ENST00000531709
Ensembl:ENST00000532297 GeneID:10482 KEGG:hsa:10482 UCSC:uc001nvf.1
UCSC:uc001nvg.1 GeneCards:GC11M062559 HGNC:HGNC:8071 HPA:CAB016327
MIM:602647 neXtProt:NX_Q9UBU9 PharmGKB:PA31858 InParanoid:Q9UBU9
PhylomeDB:Q9UBU9 ChiTaRS:NXF1 EvolutionaryTrace:Q9UBU9
GenomeRNAi:10482 NextBio:39766 ArrayExpress:Q9UBU9 Bgee:Q9UBU9
CleanEx:HS_NXF1 Genevestigator:Q9UBU9 GermOnline:ENSG00000162231
Uniprot:Q9UBU9
Length = 619
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 161/438 (36%), Positives = 249/438 (56%)
Query: 11 IVLVSSATPYVELNNEIK----DKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPL 66
I++ SSA P+ LN E+K +++KL+M+KRY+G +ALDL +DPD V N+ V L
Sbjct: 189 IIINSSAPPHTILN-ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVL 247
Query: 67 DRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLA 126
+R + M + II EN+P+L +LNLS N+LY + + S+ + P +KIL L+ N +K
Sbjct: 248 NRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER 307
Query: 127 TIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLED 186
+ N + F +Q Y S +R+ FPKLL+LD +LPPPI FD+E
Sbjct: 308 ELDKIKGLKLEELWLDG-NSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEA 366
Query: 187 NIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVT--QGX 244
LP +GS+ + ++ FL+QY+A++D+ R GL+DAYH+ A SL +
Sbjct: 367 PTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQN 426
Query: 245 XXXXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLY 304
SRN+ ++++P + LL + +++ L LP T+HD+ SF D
Sbjct: 427 PARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQ 486
Query: 305 TPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQ 364
T L+ FSV G+++E+ G K++ L RAF R F+ VP S G I ND+LF+ +A+ E+
Sbjct: 487 TSTLLCFSVNGVFKEVD-G-KSRDSL-RAFTRTFIAVPASNSGLCIVNDELFVRNASSEE 543
Query: 365 AEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAV 424
++AF+ S+ +S E +Q M++A S SGMNL +S+KCL + WDY ++
Sbjct: 544 IQRAFAMPAPTPSSSPVPTLSPE---QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSA 600
Query: 425 TIFNQLKAKNALPSEAFI 442
F LKAK +P AF+
Sbjct: 601 QAFTHLKAKGEIPEVAFM 618
>UNIPROTKB|I3LNX4 [details] [associations]
symbol:NXF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042405 "nuclear inclusion body" evidence=IEA]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=IEA]
[GO:0005643 "nuclear pore" evidence=IEA] [GO:0005487
"nucleocytoplasmic transporter activity" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR001611
InterPro:IPR002075 InterPro:IPR005637 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR015245 Pfam:PF02136 Pfam:PF03943
Pfam:PF09162 ProDom:PD043466 PROSITE:PS51281 PROSITE:PS51450
SMART:SM00804 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005643 InterPro:IPR003603 SMART:SM00446
SUPFAM:SSF46934 GO:GO:0042405 InterPro:IPR018222 PROSITE:PS50177
GO:GO:0016973 KO:K14284 GeneTree:ENSGT00390000007539 GO:GO:0005487
CTD:10482 OMA:RKYDKSW EMBL:FP312617 RefSeq:NP_001230279.1
UniGene:Ssc.55923 Ensembl:ENSSSCT00000029108 GeneID:100628213
KEGG:ssc:100628213 Uniprot:I3LNX4
Length = 620
Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
Identities = 159/442 (35%), Positives = 250/442 (56%)
Query: 7 NHTLIVLVSSATPYVELNNEIK----DKIKLVMAKRYNGDNKALDLSKFYADPDFVEANM 62
N + ++++S+ P + NE+K +++KL+M+KRY+G +ALDL DPD V N+
Sbjct: 185 NRRISIIINSSPPPHTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLVAQNI 244
Query: 63 FVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNI 122
V L+R + M + II EN+P+L +LNLS NKLY + L ++ + P +KIL L+ N +
Sbjct: 245 DVVLNRRSCMAAALRIIEENIPELLSLNLSNNKLYRLDDLSNIVQKAPNLKILNLSGNEL 304
Query: 123 KDLATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVF 182
K + N + F +Q Y S +R+ FPKLL+LD +LPPPI F
Sbjct: 305 KSERELDKIKGLKLEELWLDG-NTLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAF 363
Query: 183 DLEDNIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVT- 241
D+E LP +GS+ ++++ FL+QY+A++D+ R L+DAYH+ A SL +
Sbjct: 364 DVEAPTMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPF 423
Query: 242 -QGXXXXXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCD 300
SRN+ ++++P + LL + +++ L LP T+HD+ SF D
Sbjct: 424 IPQNPARSNLAEYFKDSRNVKKLKDPSLRFRLLKHTRLNVVAFLNELPKTQHDINSFVVD 483
Query: 301 CPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSA 360
T L+ FSV G+++E+ G K++ L RAF R F+ VP S G I ND+LF+ +A
Sbjct: 484 ISAQTSTLLCFSVNGVFKEVD-G-KSRDSL-RAFTRTFVAVPGSNSGLCIVNDELFVRNA 540
Query: 361 TPEQAEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDY 420
+P++ ++AF+ S+ +S E +Q M++A S SGMNL +S+KCL + WDY
Sbjct: 541 SPDEIQRAFAMPAPTPSSSPVPTLSPE---QQEMLQAFSTQSGMNLEWSQKCLQDNNWDY 597
Query: 421 DQAVTIFNQLKAKNALPSEAFI 442
++ F LKAK +P AFI
Sbjct: 598 TRSAQAFTHLKAKGEIPEVAFI 619
>UNIPROTKB|E2QVI8 [details] [associations]
symbol:NXF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] Pfam:PF00560
InterPro:IPR001611 InterPro:IPR002075 InterPro:IPR005637
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR015245
Pfam:PF02136 Pfam:PF03943 Pfam:PF09162 ProDom:PD043466
PROSITE:PS51281 PROSITE:PS51450 SMART:SM00804 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006406 SUPFAM:SSF46934 InterPro:IPR018222 PROSITE:PS50177
Ensembl:ENSCAFT00000024759 Uniprot:E2QVI8
Length = 625
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 159/449 (35%), Positives = 252/449 (56%)
Query: 7 NHTLIVLVSSATPYVELNNEIK----DKIKLVMAKRYNGDNKALDLSKFYADPDFVEANM 62
N + ++++S+ P + NE+K +++KL+M+KRY+G +ALDL +DPD V N+
Sbjct: 183 NRRISIIINSSVPPHSVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNI 242
Query: 63 FVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNI 122
V L+R + M + II EN+P+L +LNLS N+LY + + SL + P +KIL L+ N +
Sbjct: 243 DVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSLVQKAPNLKILNLSGNEL 302
Query: 123 KDLATIRTXXXXXXXXXXXXXKNPWTECFNEQDAY-------TSEVRKIFPKLLKLDDIQ 175
K + NP + F +Q Y S +R+ FPKLL+LD +
Sbjct: 303 KSERELDKVKGLKLEELWLDG-NPLCDTFRDQSTYIRSVVASVSAIRERFPKLLRLDGHE 361
Query: 176 LPPPIVFDLEDNIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQ 235
LPPPI FD+E LP +GS+ ++++ FL+QY+A++D+ R L+DAYH+ A
Sbjct: 362 LPPPIAFDVEAPTMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGAC 421
Query: 236 YSLVV--TQGXXXXXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHD 293
SL + T SRN+ ++++P + LL + +++ L LP T+HD
Sbjct: 422 CSLSIPFTPQNPARSNLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHD 481
Query: 294 LLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITND 353
+ SF D T L+ FSV G+++E+ G K++ L RAF R F+ VP S G I ND
Sbjct: 482 VNSFVVDISAQTSTLLCFSVNGVFKEVD-G-KSRDSL-RAFTRTFVAVPASNSGLCIVND 538
Query: 354 QLFITSATPEQAEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCL 413
+LF+ +A+ ++ ++AF+ S+ +S E +Q M++A S SGMNL +S+KCL
Sbjct: 539 ELFVRNASADEIQRAFAMPAPTPSSSPVPTLSPE---QQEMLQAFSTQSGMNLEWSQKCL 595
Query: 414 NEVQWDYDQAVTIFNQLKAKNALPSEAFI 442
+ WDY ++ F LKAK +P AF+
Sbjct: 596 QDNNWDYTRSAQAFTHLKAKGEIPEVAFM 624
>UNIPROTKB|F6XRT0 [details] [associations]
symbol:NXF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] Pfam:PF00560
InterPro:IPR001611 InterPro:IPR002075 InterPro:IPR005637
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR015245
Pfam:PF02136 Pfam:PF03943 Pfam:PF09162 ProDom:PD043466
PROSITE:PS51281 PROSITE:PS51450 SMART:SM00804 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006406 InterPro:IPR003603 SMART:SM00446 SUPFAM:SSF46934
InterPro:IPR018222 PROSITE:PS50177 GeneTree:ENSGT00390000007539
EMBL:AAEX03011662 Ensembl:ENSCAFT00000024759 EMBL:AAEX03011663
Uniprot:F6XRT0
Length = 623
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 155/432 (35%), Positives = 246/432 (56%)
Query: 7 NHTLIVLVSSATPYVELNNEIK----DKIKLVMAKRYNGDNKALDLSKFYADPDFVEANM 62
N + ++++S+ P + NE+K +++KL+M+KRY+G +ALDL +DPD V N+
Sbjct: 183 NRRISIIINSSVPPHSVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNI 242
Query: 63 FVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNI 122
V L+R + M + II EN+P+L +LNLS N+LY + + SL + P +KIL L+ N +
Sbjct: 243 DVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSLVQKAPNLKILNLSGNEL 302
Query: 123 KDLATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVF 182
K + NP + F +Q Y S +R+ FPKLL+LD +LPPPI F
Sbjct: 303 KSERELDKVKGLKLEELWLDG-NPLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAF 361
Query: 183 DLEDNIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV-- 240
D+E LP +GS+ ++++ FL+QY+A++D+ R L+DAYH+ A SL +
Sbjct: 362 DVEAPTMLPPCKGSYFGTETLKNLVLHFLQQYYAVYDSGDRQRLLDAYHDGACCSLSIPF 421
Query: 241 TQGXXXXXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCD 300
T SRN+ ++++P + LL + +++ L LP T+HD+ SF D
Sbjct: 422 TPQNPARSNLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVD 481
Query: 301 CPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSA 360
T L+ FSV G+++E+ G K++ L RAF R F+ VP S G I ND+LF+ +A
Sbjct: 482 ISAQTSTLLCFSVNGVFKEVD-G-KSRDSL-RAFTRTFVAVPASNSGLCIVNDELFVRNA 538
Query: 361 TPEQAEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDY 420
+ ++ ++AF+ S+ +S E +Q M++A S SGMNL +S+KCL + WDY
Sbjct: 539 SADEIQRAFAMPAPTPSSSPVPTLSPE---QQEMLQAFSTQSGMNLEWSQKCLQDNNWDY 595
Query: 421 DQAVTIFNQLKA 432
++ F LKA
Sbjct: 596 TRSAQAFTHLKA 607
>UNIPROTKB|F1RYG7 [details] [associations]
symbol:NXF2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001611
InterPro:IPR002075 InterPro:IPR005637 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR015245 Pfam:PF02136 Pfam:PF03943
Pfam:PF09162 ProDom:PD043466 PROSITE:PS51281 PROSITE:PS51450
SMART:SM00804 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 InterPro:IPR003603
SMART:SM00446 SUPFAM:SSF46934 InterPro:IPR018222 PROSITE:PS50177
GeneTree:ENSGT00390000007539 OMA:NTQDGYT EMBL:CU633293
Ensembl:ENSSSCT00000013680 Uniprot:F1RYG7
Length = 629
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 149/437 (34%), Positives = 236/437 (54%)
Query: 10 LIVLVSSATPYV---ELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPL 66
+IV S PY +L E +++KL + KRY+ KALDL + DP V ++ + L
Sbjct: 196 IIVNPSDVVPYSVRNKLEPEEMEQLKLTLYKRYDVSQKALDLQRLRFDPGLVGHDIDIIL 255
Query: 67 DRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLA 126
+R N M++ II +N P+L +LNLS NKLY + L + +++P VKIL L+ N +K
Sbjct: 256 NRRNCMSATLQIIEKNFPELLSLNLSSNKLYRLDGLSDIIQMVPTVKILNLSKNELKSAW 315
Query: 127 TIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLED 186
+ + NP F Q Y S +R+ FPKLL+LD LP P + +++
Sbjct: 316 EL-SKMKGLKLEELWLQGNPLCGTFPNQSTYISAIRECFPKLLRLDGRVLPSPRIVNIDT 374
Query: 187 NIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV--TQGX 244
L + S+ + ++ FL+QY+ ++D+ R GL+ AYH+ A +SL +
Sbjct: 375 PYVLKPCKESYKGSDALKSLILQFLQQYYLIYDSGDRYGLLGAYHQRACFSLTIPFNPKD 434
Query: 245 XXXXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLY 304
+RN+ ++++P + LL K DI+ +L LP T+HD SF D L
Sbjct: 435 PAPSSLYEYLEANRNMKKLKDPHLRVQLLKHTKHDIVHSLCVLPKTQHDFSSFMVDMWLK 494
Query: 305 TPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQ 364
T ++ FSV G+++E+ ++ +RAF R F+ P + I ND+LF+ A+P++
Sbjct: 495 TETMLCFSVTGVFKEVGGWSQG---CVRAFTRTFIATPATSSSLFIVNDELFVREASPKK 551
Query: 365 AEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAV 424
+ FS V + ST S P +E +Q +VKA S SGMNL +SEKCL + +W+Y +A
Sbjct: 552 TQSTFSISVP-TPSTSSMPTLSEE--QQQIVKAFSSQSGMNLQWSEKCLQDNEWNYTRAG 608
Query: 425 TIFNQLKAKNALPSEAF 441
+F+ LK + +P EAF
Sbjct: 609 QVFSILKTEGKIPEEAF 625
>UNIPROTKB|F1PDV5 [details] [associations]
symbol:LOC492026 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR001611
InterPro:IPR002075 InterPro:IPR005637 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR015245 Pfam:PF02136 Pfam:PF03943
Pfam:PF09162 ProDom:PD043466 PROSITE:PS51281 PROSITE:PS51450
SMART:SM00804 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 InterPro:IPR003603
SMART:SM00446 SUPFAM:SSF46934 InterPro:IPR018222 PROSITE:PS50177
GeneTree:ENSGT00390000007539 OMA:NTQDGYT EMBL:AAEX03026722
Ensembl:ENSCAFT00000028169 Ensembl:ENSCAFT00000036369
Uniprot:F1PDV5
Length = 607
Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
Identities = 157/449 (34%), Positives = 241/449 (53%)
Query: 1 RIKTVTNHTLIVLVSSAT-PY---VELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPD 56
RI N + + V+ +T PY +L E +++KL M KRY+ +ALDL DPD
Sbjct: 168 RICDDENRKISIFVNPSTVPYSVRYKLEPEEMEQLKLTMNKRYDVSQQALDLQSLRFDPD 227
Query: 57 FVEANMFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILY 116
V ++ + L+R N M + II EN P+L +LNLS NKLY + L + ++ P +K+L
Sbjct: 228 LVGHDIDIILNRRNCMAATLQIIEENFPELLSLNLSNNKLYGLDGLSDIIEMAPTIKVLN 287
Query: 117 LAHNNIKDLATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQL 176
L+ N + +L + NP + F +Q Y S +R FPKLL+LD +L
Sbjct: 288 LSKNEL-NLVWELSKMKGLKLEELWLEGNPLCDTFPDQPTYISAIRDCFPKLLRLDGQEL 346
Query: 177 PPPIVFDLEDNIELPKP-QGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQ 235
PPP++ D D L KP + S+ + ++ FL+QY+ ++D+ R GL+ AYH+ A
Sbjct: 347 PPPVIIDA-DTPCLIKPCKESYKGSETLKSLVLQFLQQYYLIYDSGDRQGLLGAYHDEAC 405
Query: 236 YSLVVTQGXXXXXXXXX--XXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHD 293
+SL ++ SRN+ ++++ + LL DI+ +L LP T+HD
Sbjct: 406 FSLAISFNPEDPAPSSLCEYSKESRNMKKLKDLSQCVQLLKHTNCDIVCSLCVLPKTQHD 465
Query: 294 LLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITND 353
L S D T ++ FSV G+++E G S +RAF R F++ P S I ND
Sbjct: 466 LSSLVVDMWFQTEKMLCFSVNGVFKEEVEGKFQGS--VRAFTRTFIVTPASNSSLCIVND 523
Query: 354 QLFITSATPEQAEKAFSSQVTASESTCSTP-VSNEILIKQNMVKALSQVSGMNLNFSEKC 412
+LF+ ATP + + AFS+Q T S S P +S E +Q MV A S SGM L +S+KC
Sbjct: 524 ELFVRDATPGETQSAFSNQETFS----SMPTLSQE---QQEMVHAFSTQSGMKLEWSQKC 576
Query: 413 LNEVQWDYDQAVTIFNQLKAKNALPSEAF 441
L + +W+Y +A +F L+ ++ +P EAF
Sbjct: 577 LQDNEWNYTRAGQVFTVLQKESKIPEEAF 605
>UNIPROTKB|Q9GZY0 [details] [associations]
symbol:NXF2 "Nuclear RNA export factor 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0050658 "RNA transport" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0006406 "mRNA export
from nucleus" evidence=NAS] [GO:0042272 "nuclear RNA export factor
complex" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0015629 "actin cytoskeleton" evidence=IDA] InterPro:IPR001611
InterPro:IPR002075 InterPro:IPR005637 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR015245 Pfam:PF02136 Pfam:PF03943
Pfam:PF09162 ProDom:PD043466 PROSITE:PS50102 PROSITE:PS51281
PROSITE:PS51450 SMART:SM00804 EMBL:AF285596 GO:GO:0007275
GO:GO:0005737 GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 SUPFAM:SSF46934 GO:GO:0042272
InterPro:IPR018222 PROSITE:PS50177 eggNOG:NOG324438 KO:K14284
HOGENOM:HOG000236269 HOVERGEN:HBG013199 OrthoDB:EOG4PK27D CTD:56001
EMBL:AJ277526 EMBL:AJ277659 EMBL:AL157436 EMBL:Z81367 EMBL:AL590069
EMBL:BC015020 EMBL:AK000423 IPI:IPI00004931 RefSeq:NP_001093156.1
RefSeq:NP_071336.1 UniGene:Hs.530358 UniGene:Hs.648337
UniGene:Hs.737538 ProteinModelPortal:Q9GZY0 SMR:Q9GZY0
IntAct:Q9GZY0 STRING:Q9GZY0 PhosphoSite:Q9GZY0 PaxDb:Q9GZY0
PRIDE:Q9GZY0 DNASU:56001 Ensembl:ENST00000330252
Ensembl:ENST00000372749 Ensembl:ENST00000372750
Ensembl:ENST00000372757 Ensembl:ENST00000372758
Ensembl:ENST00000395088 Ensembl:ENST00000412230
Ensembl:ENST00000457521 GeneID:56001 GeneID:728343 KEGG:hsa:56001
KEGG:hsa:728343 UCSC:uc004eiv.4 CTD:728343 GeneCards:GC0XM101615
GeneCards:GC0XP101471 HGNC:HGNC:8072 HGNC:HGNC:23984 MIM:300315
neXtProt:NX_Q9GZY0 PharmGKB:PA162398310 InParanoid:Q9GZY0
OMA:NTQDGYT PhylomeDB:Q9GZY0 NextBio:61450 ArrayExpress:Q9GZY0
Bgee:Q9GZY0 CleanEx:HS_NXF2 CleanEx:HS_NXF2B Genevestigator:Q9GZY0
GermOnline:ENSG00000185554 GermOnline:ENSG00000185945
Uniprot:Q9GZY0
Length = 626
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 150/443 (33%), Positives = 236/443 (53%)
Query: 7 NHTLIVLVSSAT-PYVELNNEIK----DKIKLVMAKRYNGDNKALDLSKFYADPDFVEAN 61
N + + V+ +T PY + N++K + +KL M KRYN +ALDL DPD + +
Sbjct: 189 NQKICIFVNHSTAPY-SVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRD 247
Query: 62 MFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNN 121
+ + L+R N M + II N P+L +LNL NKLY + L + + P+VK L L+ N
Sbjct: 248 IDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNK 307
Query: 122 IKDLATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIV 181
++ + NP F++Q AY S +R FPKLL+LD +L P++
Sbjct: 308 LESAWELGKVKGLKLEELWLEG-NPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVI 366
Query: 182 FDLEDNIELPKP-QGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV 240
D+ D+ E KP + +F + ++ FL+QY++++D+ R GL+ AYH+ A +SL +
Sbjct: 367 VDI-DSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEACFSLAI 425
Query: 241 T--QGXXXXXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFT 298
SRN+ +++P + LL K DI+ +L LP T+HDL S
Sbjct: 426 PFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHDLSSIL 485
Query: 299 CDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFIT 358
D T ++ FSV G+++E+ G S L AF R F+ P S I ND+LF+
Sbjct: 486 VDVWCQTERMLCFSVNGVFKEVE-GQSQGSVL--AFTRTFIATPGSSSSLCIVNDELFVR 542
Query: 359 SATPEQAEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQW 418
A+P++ + AFS V+ S+ +S E +Q MV+A S SGM L +S+KCL + +W
Sbjct: 543 DASPQETQSAFSIPVSTLSSSSEPSLSQE---QQEMVQAFSAQSGMKLEWSQKCLQDNEW 599
Query: 419 DYDQAVTIFNQLKAKNALPSEAF 441
+Y +A F L+ + +P+EAF
Sbjct: 600 NYTRAGQAFTMLQTEGKIPAEAF 622
>UNIPROTKB|G3X6I2 [details] [associations]
symbol:NXF2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001611
InterPro:IPR002075 InterPro:IPR005637 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR015245 Pfam:PF02136 Pfam:PF03943
Pfam:PF09162 ProDom:PD043466 PROSITE:PS51281 PROSITE:PS51450
SMART:SM00804 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 InterPro:IPR003603
SMART:SM00446 SUPFAM:SSF46934 InterPro:IPR018222 PROSITE:PS50177
GeneTree:ENSGT00390000007539 OMA:YISAIQD EMBL:DAAA02070786
Ensembl:ENSBTAT00000006996 Uniprot:G3X6I2
Length = 606
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 148/443 (33%), Positives = 234/443 (52%)
Query: 7 NHTLIVLVS-SATPYV---ELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANM 62
N + + V+ SA PY +L E +K+KL KR++ ++LDL K DP+ + ++
Sbjct: 168 NQKIPIFVNPSAVPYSVRNKLRPEKMEKLKLAFNKRFDVSQQSLDLQKLRFDPNLMGHDI 227
Query: 63 FVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNI 122
+ L++ N M + II +N P+L +LNLS NKLY+ + L + ++P +KIL L++N +
Sbjct: 228 EIILNQRNCMAAALQIIKKNFPELLSLNLSCNKLYHLDGLSDIVHMVPTIKILNLSNNEL 287
Query: 123 KDLATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVF 182
+ + NP F +Q Y S V + FPKLL+LD +LP +V
Sbjct: 288 NSMWELNKMKGLKLEELWLRG-NPLCNRFPDQSTYLSAVIECFPKLLRLDGQELPSTVVT 346
Query: 183 DLEDNIELPKPQGSFLCHPEA-RDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVT 241
D KP P+ ++++ FL+QY+ ++D+ +R GL+ AYH A +SL +
Sbjct: 347 DSHPPCAT-KPSKENNKEPDTLKNMILQFLKQYYLIYDSGNRYGLLSAYHHKACFSLTIP 405
Query: 242 --QGXXXXXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTC 299
SRN+ ++++P + L +DI+RAL LP T+HDL SF
Sbjct: 406 FHSEDPGLSSLCAYFKDSRNMKKVKDPNLRVQQLKHTNSDIVRALCMLPKTQHDLSSFLV 465
Query: 300 DCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITS 359
D T ++ FSV G+++E G + +RAF R F++ P S I ND+LF+
Sbjct: 466 DMWFQTGTMLCFSVNGMFKEEVEG--GSQECVRAFTRTFIITPTSSSSLCIVNDELFVME 523
Query: 360 ATPEQAEKAFSSQV-TASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQW 418
A P+ + A S V T S S+ +T +S E +Q MV+A S SGMN +S+KCL + W
Sbjct: 524 ARPKNTQSAVSIPVPTPSTSSVAT-LSEE---QQQMVQAFSTQSGMNCQWSQKCLQDNDW 579
Query: 419 DYDQAVTIFNQLKAKNALPSEAF 441
+Y +A +F K + +P EAF
Sbjct: 580 NYTRAGQVFCMFKTEGKIPEEAF 602
>UNIPROTKB|F1RYG3 [details] [associations]
symbol:F1RYG3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001611
InterPro:IPR002075 InterPro:IPR005637 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR015245 Pfam:PF02136 Pfam:PF03943
Pfam:PF09162 ProDom:PD043466 PROSITE:PS51281 PROSITE:PS51450
SMART:SM00804 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 InterPro:IPR003603
SMART:SM00446 SUPFAM:SSF46934 InterPro:IPR018222 PROSITE:PS50177
GeneTree:ENSGT00390000007539 EMBL:CU856295
Ensembl:ENSSSCT00000024111 OMA:YISAIQD Uniprot:F1RYG3
Length = 608
Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
Identities = 145/440 (32%), Positives = 234/440 (53%)
Query: 10 LIVLVSSATPYVELNNEIK----DKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVP 65
+IV S PY +++++K +++KL + KRYN +ALDL + DPD ++ +
Sbjct: 174 IIVNPSDVVPY-SVHDKLKPGEMEQLKLTLHKRYNISQQALDLQRLRYDPDLTGHDIDII 232
Query: 66 LDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDL 125
L+R N M++ +I +N P+L +LNLS NKLY + L + +++P VKIL L+ N +K
Sbjct: 233 LNRRNCMSATLQVIKKNFPELLSLNLSSNKLYRLDGLSDIIQMVPMVKILNLSKNELKSA 292
Query: 126 ATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLE 185
+ + NP F +Q Y S +R+ FPKLL+LD +L P + D +
Sbjct: 293 WEL-SKMKGLKLEELWLQGNPLCSTFPDQSTYVSAIRECFPKLLRLDGQELLSPSIVDND 351
Query: 186 DNIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVT--QG 243
L + S+ E + ++ FL QY+ + D R L+ AYH A +SL +
Sbjct: 352 APYVLKPCKESYKGSNELKSLILQFLRQYYLIHDYGDRRRLLGAYHNEACFSLTIPFHPE 411
Query: 244 XXXXXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPL 303
+RN+ ++++P + LL K DI+ +L LP T+HDL SF D
Sbjct: 412 DPDPSSLYEYLEENRNMKKLKDPHLRVQLLKHTKGDIVTSLCVLPKTQHDLSSFVVDMWF 471
Query: 304 YTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPE 363
T ++ FS+ G+++E+ ++ +RAF R F+ P + I ND+LF+ A+P
Sbjct: 472 QTETMLCFSINGVFKEVEGQSRG---CVRAFTRTFITTPATSSSLCIVNDELFVREASPS 528
Query: 364 QAEKA--FSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYD 421
+ + A F TAS S+ T +S E+ Q MV+A S SGM L +S+KCL + +W+Y
Sbjct: 529 ETQSAAFFIPVPTASASSVCT-LSQEL---QEMVQAFSTQSGMKLEWSQKCLQDNEWNYT 584
Query: 422 QAVTIFNQLKAKNALPSEAF 441
+A +F+ LK + +P EAF
Sbjct: 585 RAGQVFSILKTEGKIPEEAF 604
>UNIPROTKB|I3LSC9 [details] [associations]
symbol:LOC100622292 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001611
InterPro:IPR002075 InterPro:IPR005637 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR015245 Pfam:PF02136 Pfam:PF03943
Pfam:PF09162 ProDom:PD043466 PROSITE:PS51281 PROSITE:PS51450
SMART:SM00804 Gene3D:3.30.70.330 InterPro:IPR003603 SMART:SM00446
SUPFAM:SSF46934 InterPro:IPR018222 PROSITE:PS50177 EMBL:CU856295
Ensembl:ENSSSCT00000023453 Uniprot:I3LSC9
Length = 613
Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
Identities = 145/440 (32%), Positives = 234/440 (53%)
Query: 10 LIVLVSSATPYVELNNEIK----DKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVP 65
+IV S PY +++++K +++KL + KRYN +ALDL + DPD ++ +
Sbjct: 179 IIVNPSDVVPY-SVHDKLKPGEMEQLKLTLHKRYNISQQALDLQRLRYDPDLTGHDIDII 237
Query: 66 LDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDL 125
L+R N M++ +I +N P+L +LNLS NKLY + L + +++P VKIL L+ N +K
Sbjct: 238 LNRRNCMSATLQVIKKNFPELLSLNLSSNKLYRLDGLSDIIQMVPMVKILNLSKNELKSA 297
Query: 126 ATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLE 185
+ + NP F +Q Y S +R+ FPKLL+LD +L P + D +
Sbjct: 298 WEL-SKMKGLKLEELWLQGNPLCSTFPDQSTYVSAIRECFPKLLRLDGQELLSPSIVDND 356
Query: 186 DNIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVT--QG 243
L + S+ E + ++ FL QY+ + D R L+ AYH A +SL +
Sbjct: 357 APYVLKPCKESYKGSNELKSLILQFLRQYYLIHDYGDRRRLLGAYHNEACFSLTIPFHPE 416
Query: 244 XXXXXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPL 303
+RN+ ++++P + LL K DI+ +L LP T+HDL SF D
Sbjct: 417 DPDPSSLYEYLEENRNMKKLKDPHLRVQLLKHTKGDIVTSLCVLPKTQHDLSSFVVDMWF 476
Query: 304 YTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPE 363
T ++ FS+ G+++E+ ++ +RAF R F+ P + I ND+LF+ A+P
Sbjct: 477 QTETMLCFSINGVFKEVEGQSRG---CVRAFTRTFITTPATSSSLCIVNDELFVREASPS 533
Query: 364 QAEKA--FSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYD 421
+ + A F TAS S+ T +S E+ Q MV+A S SGM L +S+KCL + +W+Y
Sbjct: 534 ETQSAAFFIPVPTASASSVCT-LSQEL---QEMVQAFSTQSGMKLEWSQKCLQDNEWNYT 589
Query: 422 QAVTIFNQLKAKNALPSEAF 441
+A +F+ LK + +P EAF
Sbjct: 590 RAGQVFSILKTEGKIPEEAF 609
>FB|FBgn0003321 [details] [associations]
symbol:sbr "small bristles" species:7227 "Drosophila
melanogaster" [GO:0006406 "mRNA export from nucleus"
evidence=IMP;NAS;TAS] [GO:0030534 "adult behavior" evidence=NAS]
[GO:0007616 "long-term memory" evidence=NAS] [GO:0016973 "poly(A)+
mRNA export from nucleus" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=NAS;IDA] [GO:0005635 "nuclear envelope" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0031965 "nuclear membrane" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IMP] [GO:0006378 "mRNA polyadenylation"
evidence=IMP] InterPro:IPR001611 InterPro:IPR002075
InterPro:IPR005637 InterPro:IPR009060 InterPro:IPR012677
InterPro:IPR015245 Pfam:PF02136 Pfam:PF03943 Pfam:PF09162
PROSITE:PS50102 PROSITE:PS51281 PROSITE:PS51450 SMART:SM00804
GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 EMBL:AE014298
GO:GO:0031965 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
SUPFAM:SSF46934 InterPro:IPR018222 PROSITE:PS50177 GO:GO:0016973
eggNOG:NOG324438 KO:K14284 GeneTree:ENSGT00390000007539 OMA:QFLDQYF
EMBL:AJ251947 EMBL:AJ272389 EMBL:AJ272390 EMBL:AJ318090
EMBL:AY069415 RefSeq:NP_524660.1 UniGene:Dm.1645
ProteinModelPortal:Q9U1H9 SMR:Q9U1H9 DIP:DIP-21726N IntAct:Q9U1H9
MINT:MINT-1569799 STRING:Q9U1H9 PaxDb:Q9U1H9
EnsemblMetazoa:FBtr0073411 GeneID:43944 KEGG:dme:Dmel_CG1664
CTD:43944 FlyBase:FBgn0003321 HOGENOM:HOG000236212
InParanoid:Q9U1H9 OrthoDB:EOG4DFN3K PhylomeDB:Q9U1H9
GenomeRNAi:43944 NextBio:836426 Bgee:Q9U1H9 GermOnline:CG1664
Uniprot:Q9U1H9
Length = 672
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 140/408 (34%), Positives = 220/408 (53%)
Query: 8 HTLIVLVSSATPYVELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLD 67
+ L+ V S P V +++ K+K+K+ MAKRYN KALDLS+F+ADPD + +F PL
Sbjct: 180 YRLMPRVRSGIPLVAIDDAFKEKMKVTMAKRYNIQTKALDLSRFHADPDLKQ--VFCPLF 237
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLAT 127
R NVM + +I+ +N+PDL ALNL++N + E+ + K +P +KILYL N I LA
Sbjct: 238 RQNVMGAAIDIMCDNIPDLEALNLNDNSISSMEAFKGVEKRLPNLKILYLGDNKIPSLAH 297
Query: 128 IRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLEDN 187
+ NP + + + SEVR+ FPKL+KLD L P I FDL +
Sbjct: 298 L-VVLRNLSILELVLKNNPCRSRYKDSQQFISEVRRKFPKLVKLDGETLEPQITFDLSEQ 356
Query: 188 IELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGXXXX 247
L + + S+LC +++R FL+QYF +FD+ +R L+DAYHE A S+ +
Sbjct: 357 GRLLETKASYLCDVAGAEVVRQFLDQYFRIFDSGNRQALLDAYHEKAMLSISMPSASQAG 416
Query: 248 XXXXXXXXXSRNLLRIEEPQRQKSL-LSVGKADILRALRFLPATKHDLLSFTCDCPLYTP 306
+RNL R+ + ++ L G+ + L P T+HD +FT D +Y
Sbjct: 417 RLNSFWKF-NRNLRRLLNGEENRTRNLKYGRLACVSTLDEWPKTQHDRRTFTVDLTIYNT 475
Query: 307 GLIQFSVCGLYEEITTGTKNKSKL----IRAFNRAFLLVPRSGGGFAITNDQLFITSATP 362
++ F+V GL++E+ T N + + +R F R +++VP++ G F I N+ +FIT+AT
Sbjct: 476 SMMVFTVTGLFKELNDETNNPASMELYDVRHFARTYVVVPQNNG-FCIRNETIFITNATH 534
Query: 363 EQAEKAFSSQ-------VTASESTCSTPVSNEILIKQNMVKALSQVSG 403
EQ + SQ + ++ S ++P + Q + AL +G
Sbjct: 535 EQVREFKRSQHQPAPGAMPSTSSAVTSPQAGAAAGLQGRLNALGVATG 582
Score = 140 (54.3 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 30/86 (34%), Positives = 46/86 (53%)
Query: 357 ITSATPEQAEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEV 416
I S P A +S A +T P + + K M++A+S S MN+ +S KCL E
Sbjct: 586 ILSGDPLAATAPVNSGSAAISTTAVAPGAQDESTKMQMIEAMSAQSQMNVIWSRKCLEET 645
Query: 417 QWDYDQAVTIFNQLKAKNALPSEAFI 442
WD++ A +F +L +N +P EAF+
Sbjct: 646 NWDFNHAAFVFEKLFKENKIPPEAFM 671
>UNIPROTKB|E9PIN3 [details] [associations]
symbol:NXF1 "Nuclear RNA export factor 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006406
"mRNA export from nucleus" evidence=IEA] Pfam:PF00560
InterPro:IPR001611 InterPro:IPR002075 InterPro:IPR012677
InterPro:IPR015245 Pfam:PF02136 Pfam:PF09162 ProDom:PD043466
PROSITE:PS51450 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
EMBL:AP001160 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406
InterPro:IPR003603 SMART:SM00446 InterPro:IPR018222 PROSITE:PS50177
HGNC:HGNC:8071 ChiTaRS:NXF1 IPI:IPI00978175
ProteinModelPortal:E9PIN3 SMR:E9PIN3 Ensembl:ENST00000530875
UCSC:uc009yog.1 ArrayExpress:E9PIN3 Bgee:E9PIN3 Uniprot:E9PIN3
Length = 603
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 137/375 (36%), Positives = 213/375 (56%)
Query: 11 IVLVSSATPYVELNNEIK----DKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPL 66
I++ SSA P+ LN E+K +++KL+M+KRY+G +ALDL +DPD V N+ V L
Sbjct: 232 IIINSSAPPHTILN-ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVL 290
Query: 67 DRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLA 126
+R + M + II EN+P+L +LNLS N+LY + + S+ + P +KIL L+ N +K
Sbjct: 291 NRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER 350
Query: 127 TIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLED 186
+ N + F +Q Y S +R+ FPKLL+LD +LPPPI FD+E
Sbjct: 351 ELDKIKGLKLEELWLDG-NSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEA 409
Query: 187 NIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVT--QGX 244
LP +GS+ + ++ FL+QY+A++D+ R GL+DAYH+ A SL +
Sbjct: 410 PTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQN 469
Query: 245 XXXXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLY 304
SRN+ ++++P + LL + +++ L LP T+HD+ SF D
Sbjct: 470 PARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQ 529
Query: 305 TPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQ 364
T L+ FSV G+++E+ G K++ L RAF R F+ VP S G I ND+LF+ +A+ E+
Sbjct: 530 TSTLLCFSVNGVFKEVD-G-KSRDSL-RAFTRTFIAVPASNSGLCIVNDELFVRNASSEE 586
Query: 365 AEKAFSSQV-TASES 378
++AF+ T S S
Sbjct: 587 IQRAFAMPAPTPSSS 601
>UNIPROTKB|F1PG81 [details] [associations]
symbol:F1PG81 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR001611
InterPro:IPR002075 InterPro:IPR005637 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR015245 Pfam:PF02136 Pfam:PF03943
Pfam:PF09162 ProDom:PD043466 PROSITE:PS51281 PROSITE:PS51450
SMART:SM00804 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 SUPFAM:SSF46934
InterPro:IPR018222 PROSITE:PS50177 GeneTree:ENSGT00390000007539
EMBL:AAEX03026719 Ensembl:ENSCAFT00000028110 OMA:YGDRQSL
Uniprot:F1PG81
Length = 642
Score = 398 (145.2 bits), Expect = 5.0e-56, Sum P(2) = 5.0e-56
Identities = 94/273 (34%), Positives = 142/273 (52%)
Query: 171 LDDIQLPPPIVFDLEDNIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAY 230
LD L PP + D + + + S+ E ++++ FL+QY+ ++D+ +R GL+ AY
Sbjct: 374 LDGQDLTPPDIIDTDMPYSIQPSKESYKGSEELKNLVLQFLQQYYLIYDSGNRQGLLGAY 433
Query: 231 HENAQYSLVVTQGXXXXXXXXX--XXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLP 288
H+ A +SL + +RN+ +++ LL K DIL +L LP
Sbjct: 434 HDEACFSLAIPFNSKDPVPSNLCEYFKENRNMKNLKDFSLCVQLLKHTKYDILCSLYMLP 493
Query: 289 ATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGF 348
T+HDL SF D T ++ FSV G++ E G S IRAF R F+ P S
Sbjct: 494 KTQHDLSSFMVDMWFQTEKMLCFSVSGVFREEVEGKSQGS--IRAFTRTFIATPVSDSTL 551
Query: 349 AITNDQLFITSATPEQAEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNF 408
I ND+LF+ ATP++ + FS Q S+ +S E +Q MV+A S SGM L +
Sbjct: 552 CIVNDELFVRDATPDETQSVFSKQEPTLTSSSMVTLSQE---QQEMVQAFSTQSGMKLEW 608
Query: 409 SEKCLNEVQWDYDQAVTIFNQLKAKNALPSEAF 441
S+KCL E +W+Y +A IF K ++ +P EAF
Sbjct: 609 SQKCLQENEWNYTRAGQIFTVFKNESKIPEEAF 641
Score = 206 (77.6 bits), Expect = 5.0e-56, Sum P(2) = 5.0e-56
Identities = 48/120 (40%), Positives = 70/120 (58%)
Query: 7 NHTLIVLVS-SATPY---VELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANM 62
N + + V+ S+ PY +L E +++KL M KRY+ +ALDL DPD V ++
Sbjct: 140 NRKISIFVNPSSVPYSVRYKLEPEEMEQLKLTMNKRYDVSQQALDLQSLRFDPDLVGHDI 199
Query: 63 FVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNI 122
+ L+R N M + II EN P+L +LNLS NKLY + L + + PRVKIL L+ N +
Sbjct: 200 DIILNRRNCMAATLQIIEENFPELLSLNLSNNKLYGLDGLSDIIQKAPRVKILNLSKNEL 259
>ZFIN|ZDB-GENE-060825-299 [details] [associations]
symbol:zgc:153681 "zgc:153681" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] InterPro:IPR001611 InterPro:IPR002075
InterPro:IPR005637 InterPro:IPR009060 InterPro:IPR012677
InterPro:IPR015245 Pfam:PF02136 Pfam:PF09162 ProDom:PD043466
PROSITE:PS51281 PROSITE:PS51450 ZFIN:ZDB-GENE-060825-299
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 SUPFAM:SSF46934 InterPro:IPR018222
PROSITE:PS50177 eggNOG:NOG324438 KO:K14284 HOGENOM:HOG000236269
HOVERGEN:HBG013199 OrthoDB:EOG4PK27D EMBL:BC122378 IPI:IPI00863152
RefSeq:NP_001038894.1 UniGene:Dr.160056 ProteinModelPortal:Q0P3Y8
SMR:Q0P3Y8 STRING:Q0P3Y8 GeneID:751719 KEGG:dre:751719
InParanoid:Q0P3Y8 NextBio:20917861 Uniprot:Q0P3Y8
Length = 610
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 136/415 (32%), Positives = 225/415 (54%)
Query: 1 RIKTVTNHTLIVLVSSA--TPYV--ELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPD 56
RI ++VL++S P++ EL E + +K ++KR++ K+LDL+ DP+
Sbjct: 203 RILDSDGQRVVVLMNSCYFPPFLKSELRLEDLELLKFCLSKRFDDSQKSLDLTSIRTDPE 262
Query: 57 FVEANMFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILY 116
V N+ + L+R N M +V II E++P+L +LNLS+NKLY + L L P ++ L
Sbjct: 263 LVSHNVDIILNRKNCMQAVIKIIQESIPELLSLNLSKNKLYKLDGLTELVNKAPNLQSLN 322
Query: 117 LAHNNIKDLATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQL 176
L+ N +K + NP + F +Q Y S V+K FP+LL+LD L
Sbjct: 323 LSCNELKSQCELDKVKGFRLVELCLDG-NPLCDRFKDQTTYISAVQKRFPRLLRLDGHVL 381
Query: 177 PPPIVFDLEDNIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQY 236
PI F++E + +P +GS E + +++ FLEQY++++D+ R L++AYHE+A +
Sbjct: 382 SLPICFEVETSSNIPLCKGSHFVSNEIQGLIQRFLEQYYSIYDSGDRQPLLEAYHESACF 441
Query: 237 SLVVTQGXXXXXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLS 296
SL + SRN+ I++ + LL + ++ L LP T+HD+ S
Sbjct: 442 SLCLPSISNPSRYKLDYFKNSRNVKNIKDSPTRFRLLKHTRLTVVACLNELPKTQHDINS 501
Query: 297 FTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLF 356
D Y L+ F+V G+++E+ +++ L +AF+R F+ VP G I ND+LF
Sbjct: 502 INVDVNAYASTLLAFTVSGVFKEVDDQSED---LFKAFSRVFVTVPAQNSGLCIVNDELF 558
Query: 357 ITSATPEQAEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEK 411
+ + T E+ + AF+ T ++S S+PV +Q M+ A SQ+S MNL +S+K
Sbjct: 559 VRNTTMEEIQCAFT---TPTQSPSSSPVPILSAYQQEMLSAFSQMSEMNLQWSQK 610
>RGD|1566170 [details] [associations]
symbol:Nxf7 "nuclear RNA export factor 7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006406
"mRNA export from nucleus" evidence=IEA] InterPro:IPR001611
InterPro:IPR002075 InterPro:IPR005637 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR015245 Pfam:PF02136 Pfam:PF03943
Pfam:PF09162 ProDom:PD043466 PROSITE:PS51281 PROSITE:PS51450
SMART:SM00804 RGD:1566170 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006406 SUPFAM:SSF46934
InterPro:IPR018222 PROSITE:PS50177 eggNOG:NOG324438 KO:K14284
GeneTree:ENSGT00390000007539 HOGENOM:HOG000236269
HOVERGEN:HBG013199 OrthoDB:EOG4PK27D EMBL:BC100151 IPI:IPI00391138
RefSeq:NP_001032293.1 UniGene:Rn.24735 SMR:Q498M8
Ensembl:ENSRNOT00000033752 GeneID:501621 KEGG:rno:501621
UCSC:RGD:1566170 CTD:170722 InParanoid:Q498M8 NextBio:709395
Genevestigator:Q498M8 Uniprot:Q498M8
Length = 614
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 144/432 (33%), Positives = 222/432 (51%)
Query: 16 SATPYVELNN---EIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLDRSNVM 72
S PY N E +++KL M KRY+ AL L K DPD + N+ + L+R + M
Sbjct: 187 SVAPYSVQNRFTREQMEQLKLAMKKRYDISQHALCLKKLRFDPDLMNHNIDMILNRRSCM 246
Query: 73 TSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTXX 132
T+ II E+ P L +LNLS NKL+ +SL + K P++KIL L+ N ++ +
Sbjct: 247 TATLQIIQEDFPKLLSLNLSSNKLFQLDSLFDVVKKAPKLKILNLSKNMLRTAWELEKIR 306
Query: 133 XXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNIELPK 192
NP F + +Y S + + FP+L LD +LP D+E+ +L K
Sbjct: 307 GLKLEQLWLEG-NPLCSTFPDHSSYVSAILEYFPQLSCLDGRKLPLSTGMDIEEP-QLMK 364
Query: 193 PQGSFLCHPEA-RDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV--TQGXXXXXX 249
P+ + EA ++ ++ FL+ Y+ ++D+E R GL+ YHE A +SL +
Sbjct: 365 PRKAIFKGSEAIKNQVQQFLQDYYLIYDSEERQGLLSIYHEQACFSLTIPFNPSGPDLSS 424
Query: 250 XXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGLI 309
R++ +E Q+ LL K DI+ LR LP T H SF D +
Sbjct: 425 MCGYFKDERDVKNPKEFHIQRQLLKYTKEDIVGYLRTLPKTLHVFNSFQVDICFQMEKTL 484
Query: 310 QFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQAEKAF 369
FSV GL++E+ ++ + IRAF R F+ V S I NDQLF+ + +P++ + AF
Sbjct: 485 CFSVSGLFKEVEGSSQ---ECIRAFMRIFIAVFESSSNLCIVNDQLFVRNPSPDEIQGAF 541
Query: 370 SSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQ 429
+ S S+ +S E +Q MV+A S SGM L +S+KCL++ +WDY +A +F
Sbjct: 542 AISSPTSCSSFKLVLSQE---QQRMVQAFSTQSGMKLEWSQKCLDDNKWDYTRAAEVFTM 598
Query: 430 LKAKNALPSEAF 441
L+ K+ +P E F
Sbjct: 599 LQTKSKIPKEFF 610
>RGD|1559530 [details] [associations]
symbol:Nxf2 "nuclear RNA export factor 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005635
"nuclear envelope" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006405 "RNA export from nucleus"
evidence=ISO] [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0015629 "actin cytoskeleton" evidence=ISO] [GO:0016973
"poly(A)+ mRNA export from nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001611 InterPro:IPR002075
InterPro:IPR005637 InterPro:IPR009060 InterPro:IPR012677
InterPro:IPR015245 Pfam:PF02136 Pfam:PF03943 Pfam:PF09162
ProDom:PD043466 PROSITE:PS51281 PROSITE:PS51450 SMART:SM00804
RGD:1559530 GO:GO:0005737 GO:GO:0005635 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 SUPFAM:SSF46934 InterPro:IPR018222
PROSITE:PS50177 GO:GO:0016973 GeneTree:ENSGT00390000007539
OrthoDB:EOG4PK27D IPI:IPI00558083 Ensembl:ENSRNOT00000015806
UCSC:RGD:1559530 Uniprot:D3Z8R9
Length = 681
Score = 340 (124.7 bits), Expect = 5.4e-54, Sum P(2) = 5.4e-54
Identities = 83/259 (32%), Positives = 140/259 (54%)
Query: 188 IELPKPQGSFLCHPEA---RDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGX 244
+++ PQ H E ++++ FL++Y+ +D R L+DAYH+ A +SL V
Sbjct: 429 MDIEAPQLCKKTHNETELIKNLVLRFLKEYYLFYDNGDRLRLLDAYHDQACFSLSVPFNV 488
Query: 245 XX--XXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCP 302
+R++ + ++ + LL K DI+ +L LP T+HDL SF D
Sbjct: 489 SDPDLDNLEEYLKYNRDIKKQQDSNMRVQLLKHTKHDIVTSLSLLPKTQHDLCSFWVDLC 548
Query: 303 LYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATP 362
++ ++ FSV GL++E+ + IRAF R F+ +P S I ND+L + +A+P
Sbjct: 549 FHSEMMLCFSVNGLFKEVEGKCQG---CIRAFTRIFIAIPCSDSRICIMNDELIVRNASP 605
Query: 363 EQAEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQ 422
++ +KAF+S A +++ +S E +Q MVK+ S SGM L++S+KCL + +WDY +
Sbjct: 606 KEIQKAFTSS-PAPDTSLKPLLSAE---QQEMVKSFSVQSGMKLDWSQKCLEDNEWDYTK 661
Query: 423 AVTIFNQLKAKNALPSEAF 441
A F L+ + +P E F
Sbjct: 662 AGEAFTALQNEGKIPKEFF 680
Score = 251 (93.4 bits), Expect = 5.4e-54, Sum P(2) = 5.4e-54
Identities = 58/170 (34%), Positives = 91/170 (53%)
Query: 6 TNHTLIVLVS-SATPYVELN---NEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEAN 61
T+ + + VS S PY N +E + +K+ + KRY+ KALDL KF D D ++ +
Sbjct: 188 TSRKISLFVSPSVVPYSVQNKFSSEQMEHLKISIMKRYDASQKALDLEKFRFDQDLMDKD 247
Query: 62 MFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNN 121
+ + L+R + M + II N+P+L +LNL NKLY + L + + P+VKIL L+ N
Sbjct: 248 IDMMLNRRSCMVATLQIIESNIPELLSLNLKNNKLYQLDGLSDMTEKAPQVKILNLSRNK 307
Query: 122 IKDLATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKL 171
+K + + NP+ C+ + Y S VR +FPKLL+L
Sbjct: 308 LKSIFELEKVKELKLEELWLEG-NPFCNCYLDDSEYISAVRDLFPKLLRL 356
>UNIPROTKB|E2RQU8 [details] [associations]
symbol:LOC492024 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR002075
InterPro:IPR005637 InterPro:IPR009060 InterPro:IPR012677
InterPro:IPR015245 Pfam:PF02136 Pfam:PF03943 Pfam:PF09162
ProDom:PD043466 PROSITE:PS51281 SMART:SM00804 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006406 InterPro:IPR003603 SMART:SM00446 SUPFAM:SSF46934
InterPro:IPR018222 PROSITE:PS50177 GeneTree:ENSGT00390000007539
EMBL:AAEX03011965 Ensembl:ENSCAFT00000009095 Uniprot:E2RQU8
Length = 611
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 142/432 (32%), Positives = 221/432 (51%)
Query: 7 NHTLIVLVS-SATPY---VELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANM 62
N + + V+ S+ PY +L E +++KL M KR++ +ALDL DPD V ++
Sbjct: 178 NRKISIFVNPSSVPYSVRYKLEPEEMEQLKLTMNKRFDVSQQALDLQSLRFDPDLVGHDI 237
Query: 63 FVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNI 122
+ L+R N M + I EN P+L +LNLS NKL+ + L + + P VKIL L+ N +
Sbjct: 238 DIILNRRNCMAATLQITEENFPELLSLNLSNNKLWL-DGLSDIIEKAP-VKILNLSKNEL 295
Query: 123 KDLATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVF 182
+ + T NP + F ++ Y S +R FPKLL+LD L PP +
Sbjct: 296 NLVWELNTMKGLNLEELWLEG-NPLCDTFPDKSTYISAIRDCFPKLLRLDGQDLTPPDII 354
Query: 183 DLEDNIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVT- 241
D + + S+ E ++++ FL++Y+ ++D+ + GL+ AYH+ A + L ++
Sbjct: 355 DTDMPYSTQPSKESYKGSEELKNLVLQFLQRYYLIYDSGNHQGLLGAYHDEACFFLAISF 414
Query: 242 -QGXXXXXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCD 300
+RN+ +++ LL K DIL +L LP T+HDL SF D
Sbjct: 415 KPKDPVPSNLCEYFKENRNMKNLKDFSLCVQLLKHTKYDILCSLYVLPKTQHDLSSFMVD 474
Query: 301 CPLYTPGLIQFSVCGLYEEITTGTKNKSK-LIRAFNRAFLLVPRSGGGFAITNDQLFITS 359
+I FSV G+++E+ + KS+ +RAF R F+ P S I ND+LF
Sbjct: 475 MWFQMEKMICFSVSGVFKEV----EGKSQGFVRAFTRNFIATPVSDSTLCIVNDELF-RD 529
Query: 360 ATPEQAEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWD 419
ATP + + FS Q S+ +S E +Q MV+A S SGM L +S+KCL E +W+
Sbjct: 530 ATPNEIQSVFSKQEPTLTSSSMVTLSQE---QQEMVQAFSTQSGMKLEWSQKCLQENEWN 586
Query: 420 YDQAVTIFNQLK 431
Y +A IF K
Sbjct: 587 YTRAGQIFTVFK 598
>UNIPROTKB|J9NUV9 [details] [associations]
symbol:LOC492026 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001611
InterPro:IPR002075 InterPro:IPR005637 InterPro:IPR009060
Pfam:PF02136 Pfam:PF03943 PROSITE:PS51281 PROSITE:PS51450
SMART:SM00804 GO:GO:0005634 InterPro:IPR003603 SMART:SM00446
GO:GO:0051028 SUPFAM:SSF46934 InterPro:IPR018222 PROSITE:PS50177
GeneTree:ENSGT00390000007539 EMBL:AAEX03026722
Ensembl:ENSCAFT00000045734 Uniprot:J9NUV9
Length = 396
Score = 366 (133.9 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
Identities = 91/276 (32%), Positives = 144/276 (52%)
Query: 72 MTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTX 131
M + II EN P+L +LNLS NKLY + L + ++ P +K+L L+ N + +L +
Sbjct: 1 MAATLQIIEENFPELLSLNLSNNKLYGLDGLSDIIEMAPTIKVLNLSKNEL-NLVWELSK 59
Query: 132 XXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNIELP 191
NP + F +Q Y S +R FPKLL+LD +LPPP++ D D L
Sbjct: 60 MKGLKLEELWLEGNPLCDTFPDQPTYISAIRDCFPKLLRLDGQELPPPVIIDA-DTPCLI 118
Query: 192 KP-QGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGXXXXXXX 250
KP + S+ + ++ FL+QY+ ++D+ R GL+ AYH+ A +SL ++
Sbjct: 119 KPCKESYKGSETLKSLVLQFLQQYYLIYDSGDRQGLLGAYHDEACFSLAISFNPEDPAPS 178
Query: 251 XX--XXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGL 308
SRN+ ++++ + LL DI+ +L LP T+HDL S D T +
Sbjct: 179 SLCEYSKESRNMKKLKDLSQCVQLLKHTNCDIVCSLCVLPKTQHDLSSLVVDMWFQTEKM 238
Query: 309 IQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRS 344
+ FSV G+++E+ G S +RAF R F++ P S
Sbjct: 239 LCFSVNGVFKEVE-GKFQGS--VRAFTRTFIVTPAS 271
Score = 175 (66.7 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
Identities = 40/93 (43%), Positives = 58/93 (62%)
Query: 350 ITNDQLFITSATPEQAEKAFSSQVTASESTCSTP-VSNEILIKQNMVKALSQVSGMNLNF 408
I ND+LF+ ATP + + AFS+Q T S S P +S E +Q MV A S SGM L +
Sbjct: 307 IVNDELFVRDATPGETQSAFSNQETFS----SMPTLSQE---QQEMVHAFSTQSGMKLEW 359
Query: 409 SEKCLNEVQWDYDQAVTIFNQLKAKNALPSEAF 441
S+KCL + +W+Y +A +F L+ ++ +P EAF
Sbjct: 360 SQKCLQDNEWNYTRAGQVFTVLQKESKIPEEAF 392
>UNIPROTKB|G3X7I4 [details] [associations]
symbol:G3X7I4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR002075
InterPro:IPR012677 InterPro:IPR015245 Pfam:PF02136 Pfam:PF09162
ProDom:PD043466 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 InterPro:IPR018222
PROSITE:PS50177 GeneTree:ENSGT00390000007539 OMA:KMQAHFF
EMBL:DAAA02070863 EMBL:DAAA02070864 EMBL:DAAA02070865
EMBL:DAAA02070866 EMBL:DAAA02070867 EMBL:DAAA02070868
EMBL:DAAA02070869 EMBL:DAAA02070870 EMBL:DAAA02070871
EMBL:DAAA02070872 EMBL:DAAA02070873 EMBL:DAAA02070874
EMBL:DAAA02070875 EMBL:DAAA02070876 EMBL:DAAA02070877
EMBL:DAAA02070878 EMBL:DAAA02070879 EMBL:DAAA02070880
EMBL:DAAA02070881 EMBL:DAAA02070882 EMBL:DAAA02070883
EMBL:DAAA02070884 EMBL:DAAA02070885 EMBL:DAAA02070886
EMBL:DAAA02070887 EMBL:DAAA02070888 EMBL:DAAA02070889
Ensembl:ENSBTAT00000030459 Uniprot:G3X7I4
Length = 573
Score = 403 (146.9 bits), Expect = 7.4e-40, Sum P(2) = 7.4e-40
Identities = 114/386 (29%), Positives = 185/386 (47%)
Query: 23 LNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLDRSNVMTSVCNIINEN 82
L +E ++IKL M K Y+ +ALD+ + PD + + + +R N M + ++
Sbjct: 194 LTSEKLEQIKLTMNKPYDACQQALDIQRLRFGPDLITRGIGMTWNRRNSMAASLHVYPGI 253
Query: 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTXXXXXXXXXXXX 142
P L +L LS K Y L ++ ++ K L L++ +K +A
Sbjct: 254 RPMLSSLYLSNKKPYLVHGLSTIKEIASTTKNLNLSNTEVK-IAGEMDKGHQLEPEGMCA 312
Query: 143 XKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNIELPKPQGSFLCHPE 202
++ F ++ A S + ++FP+LL LD + +E LP +GSF E
Sbjct: 313 DRSAVCTTFRDESANMSTLLELFPRLLSLDGQETLSGSKCAVEAPKCLPMCKGSFFGSEE 372
Query: 203 ARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVT-QGXXXXXXXX-XXXXXSRNL 260
+ ++ FL+QY+ + D R GL+ AYHE A +SL + Q +RN+
Sbjct: 373 LKSLILKFLQQYYLIHDYGDRQGLLGAYHEEACFSLAIPFQPKDPALSSMCAYFLDNRNM 432
Query: 261 LRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEI 320
+++P + ++ K DI+ L LP T+HD SF D ++ FSV G+++E
Sbjct: 433 KTLKDPNLRVQMMKHTKHDIVHTLCALPKTQHDFSSFVVDMCFQMEMMLCFSVNGVFKEE 492
Query: 321 TTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQAEKAFSSQVTASESTC 380
GT +RAF R F+ P S I ND+LF++ A+P +A+ AFS V S+
Sbjct: 493 VEGTS--PGCVRAFTRTFIATPASPSSVCIVNDELFVSKASPSEAQ-AFSIPVPTLTSSS 549
Query: 381 STPVSNEILIKQNMVKALSQVSGMNL 406
+ +S E +Q MV+AL SGM L
Sbjct: 550 THTLSQE---QQEMVQALFITSGMKL 572
Score = 38 (18.4 bits), Expect = 7.4e-40, Sum P(2) = 7.4e-40
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 20 YVELNNEIKDKIKLVMAKRYNGDNKALDL 48
+VE N + +K V +K +N DN+ + +
Sbjct: 152 FVE-NANVACALKNVSSKIFNEDNEKISI 179
>UNIPROTKB|J9NRI2 [details] [associations]
symbol:NXF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR002075
InterPro:IPR005637 InterPro:IPR009060 InterPro:IPR012677
InterPro:IPR015245 Pfam:PF02136 Pfam:PF03943 Pfam:PF09162
ProDom:PD043466 SMART:SM00804 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406
SUPFAM:SSF46934 InterPro:IPR018222 PROSITE:PS50177
GeneTree:ENSGT00390000007539 OMA:KMQAHFF Ensembl:ENSCAFT00000046117
Uniprot:J9NRI2
Length = 563
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 129/442 (29%), Positives = 204/442 (46%)
Query: 7 NHTLIVLV-SSATPYV---ELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANM 62
N T+ V V S P+ EL +E ++ KL M NK L ++ D + ++
Sbjct: 140 NETVSVFVYPSDAPHSVQKELMSEKVEQTKLTM-------NKCLLIASSGLLGDLITHDI 192
Query: 63 FVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNI 122
+ L+ N M + +N+ L LN S K Y + S+ + +K L ++ +
Sbjct: 193 AMVLNPRNSMAASLQTHGKNISKLLPLNPSNKKPYQRDGPSSIMQNASSIKPL---NSEV 249
Query: 123 KDLATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVF 182
K + + T F ++ S + ++FPKLL LD + P P
Sbjct: 250 KSAGELDKSKSLQPEEMSANRSSLCT-AFPDKSTNISSILELFPKLLCLDSQESPSPTSI 308
Query: 183 DLEDNIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV-- 240
+ + +LP +GSF + ++ FL QY+ ++D+ R GL+ AYH+ A +SL
Sbjct: 309 GIAAHKKLPTCKGSFFGSDALKSLILQFLLQYYLIYDSGDRQGLLSAYHDEACFSLTTPF 368
Query: 241 TQGXXXXXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCD 300
SRNL ++++P + LL K DI+R+L LP T+HDL F D
Sbjct: 369 NPKDPALSSLCEYFKESRNLKKLKDPSLRVQLLKQTKCDIVRSLCVLPKTQHDLSFFVVD 428
Query: 301 CPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSA 360
T +I FSV G+++E G S +RAF R F+ P S I ND+LF+ A
Sbjct: 429 MWFQTEMMICFSVNGVFKEEVEGMSQDS--VRAFTRTFIATPVSNYSLCIVNDELFVRDA 486
Query: 361 TPEQAEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDY 420
+P++ + FS V + S S P + +Q +V+ S SGMNL + + QWDY
Sbjct: 487 SPKETQSTFSIPVP-THSCSSWPTLCQK--QQEVVQTFSTQSGMNLQWLQN-----QWDY 538
Query: 421 --DQAVTIFNQLKAKNALPSEA 440
+F L+AK+ +P EA
Sbjct: 539 TGSHLAQVFTSLQAKHTIPKEA 560
>UNIPROTKB|Q5JRM6 [details] [associations]
symbol:NXF2B "Nuclear RNA export factor 2B" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006406 "mRNA export
from nucleus" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0015629 "actin cytoskeleton" evidence=IDA]
InterPro:IPR001611 InterPro:IPR002075 InterPro:IPR012677
InterPro:IPR015245 Pfam:PF02136 Pfam:PF09162 ProDom:PD043466
PROSITE:PS51450 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0015629 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406
InterPro:IPR018222 PROSITE:PS50177 eggNOG:NOG324438
HOGENOM:HOG000236269 HOVERGEN:HBG013199 EMBL:Z81367 EMBL:AL590069
UniGene:Hs.530358 UniGene:Hs.648337 UniGene:Hs.737538
HGNC:HGNC:8072 HGNC:HGNC:23984 EMBL:AL356322 EMBL:Z68332
EMBL:Z70226 EMBL:Z70689 IPI:IPI00646021 SMR:Q5JRM6 STRING:Q5JRM6
Ensembl:ENST00000372752 Ensembl:ENST00000372763 UCSC:uc004eiw.4
Uniprot:Q5JRM6
Length = 409
Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
Identities = 99/302 (32%), Positives = 157/302 (51%)
Query: 7 NHTLIVLVSSAT-PYVELNNEIK----DKIKLVMAKRYNGDNKALDLSKFYADPDFVEAN 61
N + + V+ +T PY + N++K + +KL M KRYN +ALDL DPD + +
Sbjct: 101 NQKICIFVNHSTAPY-SVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRD 159
Query: 62 MFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNN 121
+ + L+R N M + II N P+L +LNL NKLY + L + + P+VK L L+ N
Sbjct: 160 IDIILNRRNCMAATLKIIERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNK 219
Query: 122 IKDLATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIV 181
++ + NP F++Q AY S +R FPKLL+LD +L P++
Sbjct: 220 LESAWELGKVKGLKLEELWLEG-NPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVI 278
Query: 182 FDLEDNIELPKP-QGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV 240
D+ D+ E KP + +F + ++ FL+QY++++D+ R GL+ AYH+ A +SL +
Sbjct: 279 VDI-DSSETMKPCKENFTGSETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEACFSLAI 337
Query: 241 T--QGXXXXXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFT 298
SRN+ +++P + LL K DI+ +L LP T+HDL S
Sbjct: 338 PFDPKDSAPSSLCKYFEDSRNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHDLSSIL 397
Query: 299 CD 300
D
Sbjct: 398 VD 399
>UNIPROTKB|K7GQF8 [details] [associations]
symbol:LOC100622292 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] Pfam:PF00560 InterPro:IPR001611
InterPro:IPR002075 InterPro:IPR012677 InterPro:IPR015245
Pfam:PF02136 Pfam:PF09162 ProDom:PD043466 PROSITE:PS51450
Gene3D:3.30.70.330 InterPro:IPR003603 SMART:SM00446
GeneTree:ENSGT00390000007539 EMBL:CU856295
Ensembl:ENSSSCT00000032757 Uniprot:K7GQF8
Length = 421
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 95/297 (31%), Positives = 153/297 (51%)
Query: 10 LIVLVSSATPYVELNNEIK----DKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVP 65
+IV S PY +++++K +++KL + KRYN +ALDL + DPD ++ +
Sbjct: 117 IIVNPSDVVPY-SVHDKLKPGEMEQLKLTLHKRYNISQQALDLQRLRYDPDLTGHDIDII 175
Query: 66 LDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDL 125
L+R N M++ +I +N P+L +LNLS NKLY + L + +++P VKIL L+ N +K
Sbjct: 176 LNRRNCMSATLQVIKKNFPELLSLNLSSNKLYRLDGLSDIIQMVPMVKILNLSKNELKSA 235
Query: 126 ATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLE 185
+ + NP F +Q Y S +R+ FPKLL+LD +L P + D +
Sbjct: 236 WEL-SKMKGLKLEELWLQGNPLCSTFPDQSTYVSAIRECFPKLLRLDGQELLSPSIVDND 294
Query: 186 DNIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVT--QG 243
L + S+ E + ++ FL QY+ + D R L+ AYH A +SL +
Sbjct: 295 APYVLKPCKESYKGSNELKSLILQFLRQYYLIHDYGDRRRLLGAYHNEACFSLTIPFHPE 354
Query: 244 XXXXXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCD 300
+RN+ ++++P + LL K DI+ +L LP T+HDL SF D
Sbjct: 355 DPDPSSLYEYLEENRNMKKLKDPHLRVQLLKHTKGDIVTSLCVLPKTQHDLSSFVVD 411
>RGD|1564923 [details] [associations]
symbol:Nxf3 "nuclear RNA export factor 3" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0006406 "mRNA export from
nucleus" evidence=IEA;ISO] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] [GO:0042272 "nuclear RNA export factor
complex" evidence=ISO] InterPro:IPR002075 InterPro:IPR005637
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR015245
Pfam:PF02136 Pfam:PF03943 Pfam:PF09162 ProDom:PD043466
PROSITE:PS51281 SMART:SM00804 RGD:1564923 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 SUPFAM:SSF46934
GO:GO:0042272 InterPro:IPR018222 PROSITE:PS50177 GO:GO:0016973
GeneTree:ENSGT00390000007539 IPI:IPI00763843
Ensembl:ENSRNOT00000037823 Uniprot:F1M355
Length = 570
Score = 384 (140.2 bits), Expect = 2.2e-35, P = 2.2e-35
Identities = 117/444 (26%), Positives = 202/444 (45%)
Query: 1 RIKTVTNHTLIVLVSSAT-PY--VELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDF 57
+I+ T++ + + +S P+ EL +E D+ KL M ++ + + L+ + D D
Sbjct: 133 KIRDETDNKISIFISPCDEPHSVTELKSEKMDQKKLTMNQQCDTSQRILNRQRLSFDQDL 192
Query: 58 VEANMFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYL 117
+ L MT NI E++ L LN S +K Y L L I + +L L
Sbjct: 193 TTYPTDLVLSPRRYMTPSLNISEEDVTQLLPLNQSYSKSY---QLFGLLDTIWQWPLL-L 248
Query: 118 AHNNIKDLATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLP 177
N + K+ + ++ + + + ++FPKLL LD +
Sbjct: 249 TKNEANSEGKM-AKEQASDIEEICAVKSSLSTTMPDKSSNINSILELFPKLLSLDGQESC 307
Query: 178 PPIVFDLEDNIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYS 237
P + ED + + SF + ++ FL+QY+ ++D R GL++AYH +A +S
Sbjct: 308 KPALCGPEDQKTISTYKRSFFESESIKTLVLQFLQQYYFIYDNGDREGLLNAYHADACFS 367
Query: 238 LVVTQGXXXXXXXXX--XXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLL 295
L V SR++ +++P +K LL K DI+ LR LP T+HDL
Sbjct: 368 LTVPFSTMDLSASSVCEYVKYSRSMKVLKDPYMRKQLLKHKKCDIIHFLRALPKTQHDLT 427
Query: 296 SFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQL 355
SF+ D T + FSV GL++E+ ++ AF R F+ I ND+L
Sbjct: 428 SFSVDICFQTEKTLCFSVSGLFKEVEGSSQG---CFHAFTRIFVAT-WDNSDLCIINDKL 483
Query: 356 FITSATPEQAEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNE 415
+ + F S A ++ S+ + + +Q M+ SG+N+ S+KCL++
Sbjct: 484 SVRNVY------GFPSASNAVDTCSSSRLPSLSQDQQQMMPTFCSQSGVNVERSQKCLHD 537
Query: 416 VQWDYDQAVTIFNQLKAKNALPSE 439
QW+Y++A+ F LK K+ +P +
Sbjct: 538 DQWNYNKAIQSFALLKVKDTVPED 561
>UNIPROTKB|E1BAP0 [details] [associations]
symbol:NXF3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR002075
InterPro:IPR012677 InterPro:IPR015245 Pfam:PF02136 Pfam:PF09162
ProDom:PD043466 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 InterPro:IPR018222
PROSITE:PS50177 GeneTree:ENSGT00390000007539 EMBL:DAAA02070439
IPI:IPI00714046 Ensembl:ENSBTAT00000026263 OMA:KECSVPF
Uniprot:E1BAP0
Length = 563
Score = 349 (127.9 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 110/393 (27%), Positives = 182/393 (46%)
Query: 23 LNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLDRSNVMTSVCNIINEN 82
L +E +++KL + K Y+ ++LD+ + PD + ++ + +R N M + +I
Sbjct: 184 LKSEKVEQMKLTINKPYDVHQQSLDIQRLLFGPDLMIYDIGMTWNRRNGMPASLHIH--- 240
Query: 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTXXXXXXXXXXXX 142
P+L +L+ S K Y SL ++ + K L L++ +K +
Sbjct: 241 -PELSSLDQSNKKPYMVHSLSTIMENASHTKNLNLSNTEVKSAGEM-DKGQQLEPEGMWV 298
Query: 143 XKNPWTECFNEQDAYT--SEVRKIFPKLLKLDDIQLPPPIVFDLEDNIELPKPQGSFLCH 200
+N C D T S + ++FP+LL LD + E LP +GSF
Sbjct: 299 DRN--ATCTTSPDKSTNISTILELFPRLLSLDGQETLSGSKCATEAPKCLPTCKGSFFGS 356
Query: 201 PEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGXXXXXXXX--XXXXXSR 258
E + ++ FL+QY+ + D R GL+ AYHE A +SL + SR
Sbjct: 357 DELKSLILQFLQQYYLIHDYGDRQGLLCAYHEEACFSLTIPFHFKDPGPSSMCAYFKNSR 416
Query: 259 NLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGLIQFSVCGLYE 318
N+ ++++P + LL K DI+ AL LP T+HDL SF D T ++ FSV G+++
Sbjct: 417 NMKKLKDPDLRFQLLKHTKCDIVHALCGLPKTQHDLKSFMVDMWFQTQTMLCFSVNGVFK 476
Query: 319 EITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQAEKAFSSQVTASES 378
E G +R+F R F+ P + F I ND+L ++ +P++ E + +
Sbjct: 477 EEVEG--RFPGCVRSFTRTFITTPATSSSFCIVNDKLLVSDFSPKKTEPVLF--IPKPKP 532
Query: 379 TCSTPVSNEILIKQNMVKALSQVSGMNLNFSEK 411
S P + L +Q MV+ S SG N S+K
Sbjct: 533 VNSMPTFS--LEQQKMVQDFSIQSGRNFQQSQK 563
Score = 39 (18.8 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 20 YVELNNEIKDKIKLVMAKRYNGDNKALDL 48
+VE N I +K V K +N DN+ + +
Sbjct: 142 FVE-NANIAGALKNVNGKIFNEDNEKISI 169
>UNIPROTKB|J9P5X4 [details] [associations]
symbol:NXF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR002075
InterPro:IPR005637 InterPro:IPR009060 InterPro:IPR012677
InterPro:IPR015245 Pfam:PF02136 Pfam:PF09162 ProDom:PD043466
PROSITE:PS51281 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 SUPFAM:SSF46934
InterPro:IPR018222 PROSITE:PS50177 GeneTree:ENSGT00390000007539
Ensembl:ENSCAFT00000048343 Uniprot:J9P5X4
Length = 519
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 99/328 (30%), Positives = 156/328 (47%)
Query: 86 LFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTXXXXXXXXXXXXXKN 145
L LN S K Y + S+ + +K L ++ +K + +
Sbjct: 202 LLPLNPSNKKPYQRDGPSSIMQNASSIKPL---NSEVKSAGELDKSKSLQPEEMSANRSS 258
Query: 146 PWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNIELPKPQGSFLCHPEARD 205
T F ++ S + ++FPKLL LD + P P + + +LP +GSF +
Sbjct: 259 LCT-AFPDKSTNISSILELFPKLLCLDSQESPSPTSIGIAAHKKLPTCKGSFFGSDALKS 317
Query: 206 ILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV--TQGXXXXXXXXXXXXXSRNLLRI 263
++ FL QY+ ++D+ R GL+ AYH+ A +SL SRNL ++
Sbjct: 318 LILQFLLQYYLIYDSGDRQGLLSAYHDEACFSLTTPFNPKDPALSSLCEYFKESRNLKKL 377
Query: 264 EEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTG 323
++P + LL K DI+R+L LP T+HDL F D T +I FSV G+++E+ G
Sbjct: 378 KDPSLRVQLLKQTKCDIVRSLCVLPKTQHDLSFFVVDMWFQTEMMICFSVNGVFKEVE-G 436
Query: 324 TKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQAEKAFSSQVTASESTCSTP 383
S +RAF R F+ P S I ND+LF+ A+P++ + FS V + S S P
Sbjct: 437 MSQDS--VRAFTRTFIATPVSNYSLCIVNDELFVRDASPKETQSTFSIPVP-THSCSSWP 493
Query: 384 VSNEILIKQNMVKALSQVSGMNLNFSEK 411
+ +Q +V+ S SGMNL + +K
Sbjct: 494 TLCQK--QQEVVQTFSTQSGMNLQWLQK 519
>UNIPROTKB|H9GWD9 [details] [associations]
symbol:NXF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR002075
InterPro:IPR012677 InterPro:IPR015245 Pfam:PF02136 Pfam:PF09162
ProDom:PD043466 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 InterPro:IPR018222
PROSITE:PS50177 GeneTree:ENSGT00390000007539
Ensembl:ENSCAFT00000022274 Uniprot:H9GWD9
Length = 532
Score = 350 (128.3 bits), Expect = 1.0e-31, P = 1.0e-31
Identities = 94/329 (28%), Positives = 153/329 (46%)
Query: 56 DFVEANMFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKIL 115
D + ++ + L+ N M + +N+ L LN S K Y + S+ + +K L
Sbjct: 205 DLITHDIAMVLNPRNSMAASLQTHGKNISKLLPLNPSNKKPYQRDGPSSIMQNASSIKPL 264
Query: 116 YLAHNNIKDLATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQ 175
++ +K + + T F ++ S + ++FPKLL LD +
Sbjct: 265 ---NSEVKSAGELDKSKSLQPEEMSANRSSLCT-AFPDKSTNISSILELFPKLLCLDSQE 320
Query: 176 LPPPIVFDLEDNIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQ 235
P P + + +LP +GSF + ++ FL QY+ ++D+ R GL+ AYH+ A
Sbjct: 321 SPSPTSIGIAAHKKLPTCKGSFFGSDALKSLILQFLLQYYLIYDSGDRQGLLSAYHDEAC 380
Query: 236 YSLVV--TQGXXXXXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHD 293
+SL SRNL ++++P + LL K DI+R+L LP T+HD
Sbjct: 381 FSLTTPFNPKDPALSSLCEYFKESRNLKKLKDPSLRVQLLKQTKCDIVRSLCVLPKTQHD 440
Query: 294 LLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITND 353
L F D T +I FSV G+++E G S +RAF R F+ P S I ND
Sbjct: 441 LSFFVVDMWFQTEMMICFSVNGVFKEEVEGMSQDS--VRAFTRTFIATPVSNYSLCIVND 498
Query: 354 QLFITSATPEQAEKAFSSQVTASESTCST 382
+LF+ A+P++ + FS V +CS+
Sbjct: 499 ELFVRDASPKETQSTFSIPVPTH--SCSS 525
>WB|WBGene00003834 [details] [associations]
symbol:nxf-1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0005654 "nucleoplasm" evidence=IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005643 "nuclear pore" evidence=IDA]
InterPro:IPR005637 InterPro:IPR009060 Pfam:PF03943 PROSITE:PS50102
PROSITE:PS51281 SMART:SM00804 GO:GO:0008340 GO:GO:0009792
GO:GO:0005654 GO:GO:0005730 GO:GO:0005643 GO:GO:0003723
GO:GO:0051028 SUPFAM:SSF46934 InterPro:IPR018222 PROSITE:PS50177
eggNOG:NOG324438 KO:K14284 GeneTree:ENSGT00390000007539 EMBL:Z81035
PIR:T19316 RefSeq:NP_506567.1 ProteinModelPortal:Q9XVS7 SMR:Q9XVS7
STRING:Q9XVS7 PaxDb:Q9XVS7 EnsemblMetazoa:C15H11.3a GeneID:191736
KEGG:cel:CELE_C15H11.3 UCSC:C15H11.3 CTD:191736 WormBase:C15H11.3a
HOGENOM:HOG000017555 InParanoid:Q9XVS7 OMA:QFLDQYF NextBio:950152
ArrayExpress:Q9XVS7 Uniprot:Q9XVS7
Length = 628
Score = 352 (129.0 bits), Expect = 1.7e-31, P = 1.7e-31
Identities = 109/366 (29%), Positives = 183/366 (50%)
Query: 19 PYVELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLDRSNVMTSVCNI 78
P+++L E + I V+ KR+N +N+ LDLS F+ D +F +M + L + NVM +V +
Sbjct: 179 PWMKLKREEIEIIHRVVDKRHNAENRVLDLSNFHEDEEFKAKDMMMNLTKGNVMLTVLDH 238
Query: 79 INENLPDLFALNLSENK---LYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTXXXXX 135
I++ ++ AL+LS N+ L Y +L+S+AK + L L+HN+I +
Sbjct: 239 IDDKYGNIVALSLSNNRIRHLDYASALVSIAKFVME---LDLSHNHISTEKELEKFAGLP 295
Query: 136 XXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVF-DLEDNIELPKPQ 194
NP E F ++ AY S + + FP+ LD +++ P +V DL+ + +P
Sbjct: 296 VERFFFEG-NPVVESFTQRAAYISYIHQSFPRCNMLDGVEVQPLVVGPDLDIHDAMPFRA 354
Query: 195 GSFLCHPEARDILRAFLEQYFALFD----TESRAGLIDAYHENAQ-YSLVVT--QGXXXX 247
G + +P+ R ++ F+ YF +D +R L +AY +A +SL + +G
Sbjct: 355 G-YYPNPQIRVLVEQFVTSYFDFYDGPDGQRTRRNLHNAYDADASTFSLTIEHLRGSSHA 413
Query: 248 XXX-----XXXXXXSRNLLRIEEPQRQKSLLSV-GKADILRALRFLPATKHDLLSFTCDC 301
S N+L+ E R ++ S G DI AL LP + H +F D
Sbjct: 414 RHHNDECFAQYAGVSHNVLKQERFARHRASRSARGAMDIAVALSKLPTSSHMRDTFIVDV 473
Query: 302 PLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSAT 361
L + L+ F+V GL+ + G ++ F+R+FL+ PR A+ +DQLFIT A+
Sbjct: 474 FLQSNDLLGFTVQGLFCD---GDLTQTPSPSFFSRSFLVSPRENDSVAVISDQLFITVAS 530
Query: 362 PEQAEK 367
++ EK
Sbjct: 531 LDRLEK 536
Score = 151 (58.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 60/203 (29%), Positives = 94/203 (46%)
Query: 257 SRNLLRIEEPQRQKSLLSV-GKADILRALRFLPATKHDLLSFTCDCPLYTPGLIQFSVCG 315
S N+L+ E R ++ S G DI AL LP + H +F D L + L+ F+V G
Sbjct: 428 SHNVLKQERFARHRASRSARGAMDIAVALSKLPTSSHMRDTFIVDVFLQSNDLLGFTVQG 487
Query: 316 LY-EEITTGTKNKSKLIRAF--------------NRAFLLVPRSGG--GFAITNDQLFIT 358
L+ + T T + S R+F ++ F+ V F DQ
Sbjct: 488 LFCDGDLTQTPSPSFFSRSFLVSPRENDSVAVISDQLFITVASLDRLEKFKKLYDQSIAN 547
Query: 359 SATPEQAEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQW 418
A EQ +Q+ + + + I++ M+KA+ Q SGM FSEKCL + W
Sbjct: 548 GAAVEQVSAVQIAQIGVNGMGFDGAPA--LPIREEMIKAMCQFSGMIPPFSEKCLADCAW 605
Query: 419 DYDQAVTIFNQLKAKNALPSEAF 441
++D A FN++K+ ++P+EAF
Sbjct: 606 NFDFACQKFNEIKS--SVPAEAF 626
>UNIPROTKB|G5E5Z2 [details] [associations]
symbol:G5E5Z2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR002075
InterPro:IPR012677 InterPro:IPR015245 Pfam:PF02136 Pfam:PF09162
ProDom:PD043466 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 InterPro:IPR018222
PROSITE:PS50177 GeneTree:ENSGT00390000007539 EMBL:DAAA02071321
Ensembl:ENSBTAT00000046525 OMA:DELFIRE Uniprot:G5E5Z2
Length = 537
Score = 330 (121.2 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 90/347 (25%), Positives = 157/347 (45%)
Query: 23 LNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLDRSNVMTSVCNIINEN 82
L +E ++IKL M K Y+ +ALD+ + + PD + + + +R N M + ++
Sbjct: 194 LTSEKLEQIKLTMNKPYDACQQALDIQRLHFGPDLITRGIGMTWNRRNSMAASLHVYPGI 253
Query: 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTXXXXXXXXXXXX 142
P L +L LS K Y L ++ ++ + L L++ +K +A
Sbjct: 254 RPMLSSLYLSNKKPYLMHGLSTIMEIASNTENLNLSNTEVK-IAGEMDKGHQLEPEGVCA 312
Query: 143 XKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNIELPKPQGSFLCHPE 202
++ F ++ S + ++FP++L LD + +E LP +GSF +
Sbjct: 313 DRSAVCTTFRDKSTNMSTLLELFPRILSLDGQETLSGSKCAVEAPKCLPMYKGSFSGSDQ 372
Query: 203 ARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVT--QGXXXXXXXXXXXXXSRNL 260
+ FL+ Y+ + D R GL+ YH+ A + L + +RN+
Sbjct: 373 VNSQILQFLQHYYLIHDYGDRQGLLGFYHDEACFFLTIPFHSKDSGLSSMCAYFLDNRNM 432
Query: 261 LRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEI 320
+++P + ++ K DI+ AL LP +HD SF D +T + FSV G+++E
Sbjct: 433 KTLKDPNPRVQMMKHTKHDIVHALCALPKIQHDFSSFEVDMCFHTETMFCFSVSGVFKEE 492
Query: 321 TTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQAEK 367
G + AF R F P S F I ND+LFI A+P +A++
Sbjct: 493 VEGISQGC--VCAFTRTFTTTPTSSSSFCIVNDELFIREASPSEAQR 537
>UNIPROTKB|Q9H4D5 [details] [associations]
symbol:NXF3 "Nuclear RNA export factor 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0016973 "poly(A)+ mRNA
export from nucleus" evidence=IEA] [GO:0042272 "nuclear RNA export
factor complex" evidence=IDA] [GO:0006406 "mRNA export from
nucleus" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR002075 InterPro:IPR012677
InterPro:IPR015245 Pfam:PF02136 Pfam:PF09162 ProDom:PD043466
PROSITE:PS50102 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006406 GO:GO:0042272 EMBL:CH471190
InterPro:IPR018222 PROSITE:PS50177 GO:GO:0016973 KO:K14284
HOGENOM:HOG000236269 HOVERGEN:HBG013199 EMBL:AJ277527 EMBL:AF346619
EMBL:Z75746 EMBL:BC031616 EMBL:AJ277660 IPI:IPI00004930
RefSeq:NP_071335.1 UniGene:Hs.60386 ProteinModelPortal:Q9H4D5
SMR:Q9H4D5 IntAct:Q9H4D5 STRING:Q9H4D5 PhosphoSite:Q9H4D5
DMDM:20455187 PRIDE:Q9H4D5 DNASU:56000 Ensembl:ENST00000395065
GeneID:56000 KEGG:hsa:56000 UCSC:uc004eju.3 CTD:56000
GeneCards:GC0XM102330 HGNC:HGNC:8073 HPA:HPA003132 MIM:300316
neXtProt:NX_Q9H4D5 PharmGKB:PA31860 eggNOG:NOG321733
InParanoid:Q9H4D5 OMA:KMQAHFF OrthoDB:EOG4FTW0S PhylomeDB:Q9H4D5
ChiTaRS:NXF3 GenomeRNAi:56000 NextBio:61446 ArrayExpress:Q9H4D5
Bgee:Q9H4D5 CleanEx:HS_NXF3 Genevestigator:Q9H4D5 Uniprot:Q9H4D5
Length = 531
Score = 297 (109.6 bits), Expect = 6.0e-29, Sum P(2) = 6.0e-29
Identities = 75/246 (30%), Positives = 125/246 (50%)
Query: 144 KNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNIELPKPQGSFLCHPEA 203
++P F++ + + + ++FPKLL LD Q P + E + LP +GSF
Sbjct: 282 RSPVCTTFSDTSSNINSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGSFFGSEML 341
Query: 204 RDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV--TQGXXXXXXXXXXXXXSRNLL 261
++++ FL+QY+ ++D+ R GL+ AYH+ A +SL + SRN+
Sbjct: 342 KNLVLQFLQQYYLIYDSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIK 401
Query: 262 RIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEIT 321
+++P + LL K DI+ +L LP T+HDL SF D T ++ FSV G+++E+
Sbjct: 402 ILKDPYLRGELLKHTKLDIVDSLSALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVFKEVE 461
Query: 322 TGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQAEKAFSSQVTASESTCS 381
G S L AF R F+ P S I ND+LF+ + + + A + V + S+ S
Sbjct: 462 -GQSQGSVL--AFTRTFIATPGSSSSLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSS-S 517
Query: 382 TPVSNE 387
P ++
Sbjct: 518 VPAFSQ 523
Score = 72 (30.4 bits), Expect = 6.0e-29, Sum P(2) = 6.0e-29
Identities = 21/86 (24%), Positives = 43/86 (50%)
Query: 7 NHTLIVLVSSA-TPYV---ELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANM 62
N + + V+ A P+ EL +E ++IKL M ++ + +ALD+ + PD V +
Sbjct: 178 NEKISIFVNPAGIPHFVHRELKSEKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDT 237
Query: 63 FVPLDRSNVMTSVCNIINENLPDLFA 88
+ + M + ++ EN+P + +
Sbjct: 238 KMASNPRKCMAASLDVHEENIPTVMS 263
>UNIPROTKB|F1MPI0 [details] [associations]
symbol:NXF3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR002075
InterPro:IPR012677 InterPro:IPR015245 Pfam:PF02136 Pfam:PF09162
ProDom:PD043466 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 InterPro:IPR018222
PROSITE:PS50177 GeneTree:ENSGT00390000007539 EMBL:DAAA02071010
EMBL:DAAA02071011 EMBL:DAAA02071012 EMBL:DAAA02071013
EMBL:DAAA02071014 EMBL:DAAA02071015 EMBL:DAAA02071016
EMBL:DAAA02071017 EMBL:DAAA02071018 EMBL:DAAA02071019
EMBL:DAAA02071020 EMBL:DAAA02071021 EMBL:DAAA02071022
EMBL:DAAA02071023 EMBL:DAAA02071024 EMBL:DAAA02071025
EMBL:DAAA02071026 EMBL:DAAA02071027 EMBL:DAAA02071028
EMBL:DAAA02071029 EMBL:DAAA02071030 EMBL:DAAA02071031
EMBL:DAAA02071032 EMBL:DAAA02071033 EMBL:DAAA02071034
EMBL:DAAA02071035 EMBL:DAAA02071036 EMBL:DAAA02071037
EMBL:DAAA02071038 EMBL:DAAA02071039 EMBL:DAAA02071040
EMBL:DAAA02071041 EMBL:DAAA02071042 EMBL:DAAA02071043
EMBL:DAAA02071044 EMBL:DAAA02071045 EMBL:DAAA02071046
EMBL:DAAA02071047 EMBL:DAAA02071048 EMBL:DAAA02071049
EMBL:DAAA02071050 EMBL:DAAA02071051 EMBL:DAAA02071052
EMBL:DAAA02071053 EMBL:DAAA02071054 EMBL:DAAA02071055
EMBL:DAAA02071056 EMBL:DAAA02071057 EMBL:DAAA02071058
EMBL:DAAA02071059 EMBL:DAAA02071060 IPI:IPI01003654
UniGene:Bt.74574 Ensembl:ENSBTAT00000049294 OMA:TIMEISS
Uniprot:F1MPI0
Length = 529
Score = 305 (112.4 bits), Expect = 8.1e-28, Sum P(2) = 8.1e-28
Identities = 88/341 (25%), Positives = 151/341 (44%)
Query: 48 LSKFYADPDFVEANMFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAK 107
L K D + + + + N M + ++ P L +L LS KLY L ++ +
Sbjct: 191 LEKIKFPGDLITRGIGMTWNLRNSMAASLHVYPGIRPMLSSLYLSNKKLYLVHGLSTIME 250
Query: 108 VIPRVKILYLAHNNIKDLATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPK 167
+ ++ L L++ +K + T T F ++ S + ++FP+
Sbjct: 251 ISSTMENLNLSNTEVKIAGEMDTGHQLEPEGMCADRSAVCTT-FRDESTNMSTLLELFPR 309
Query: 168 LLKLDDIQLPPPIVFDLEDNIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLI 227
LL LD + +E LP +GSF + + FL+ Y+ + D R GL+
Sbjct: 310 LLSLDGQETLSGSKCAVEAPKCLPMYKGSFFGSDQVNSQILQFLQHYYLIHDYGDRQGLL 369
Query: 228 DAYHENAQYSLVVT--QGXXXXXXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALR 285
YHE A + L + +RN+ +++P + ++ K DI+RAL
Sbjct: 370 GFYHEEACFFLTIPFHSKDSGLSSMCAYFLDNRNMKTLKDPNPRVQMMKHTKHDIVRALC 429
Query: 286 FLPATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSG 345
LP T+HD SF D +T + FSV G+++E+ ++ + AF R F P S
Sbjct: 430 ALPKTQHDFSSFEVDMCFHTETMFCFSVSGVFKEVEGISQG---CVCAFTRTFTTTPTSS 486
Query: 346 GGFAITNDQLFITSATPEQAEKAFSSQVTASESTCSTPVSN 386
F I ND+LF+ A+P +A++ S + S S+P S+
Sbjct: 487 SSFCIVNDELFVREASPSEAQRLHSPSLCQPPSWSSSPPSS 527
Score = 37 (18.1 bits), Expect = 8.1e-28, Sum P(2) = 8.1e-28
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 20 YVELNNEIKDKIKLVMAKRYNGDNKALDL 48
+VE N + +K V K +N DN+ + +
Sbjct: 144 FVE-NANVACALKNVSGKIFNEDNEKISI 171
>UNIPROTKB|Q9H1B4 [details] [associations]
symbol:NXF5 "Nuclear RNA export factor 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007275
"multicellular organismal development" evidence=IEP] [GO:0050658
"RNA transport" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0006406 "mRNA export from nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0015629 "actin
cytoskeleton" evidence=IDA] InterPro:IPR001611 InterPro:IPR012677
InterPro:IPR015245 Pfam:PF09162 ProDom:PD043466 PROSITE:PS50102
PROSITE:PS51450 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0015629 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006406 PROSITE:PS50177 KO:K14284 HOVERGEN:HBG013199
EMBL:AJ277654 EMBL:AJ277655 EMBL:AJ277656 EMBL:AJ277657
EMBL:AJ277658 EMBL:AL672207 EMBL:Z70228 EMBL:BC131708
IPI:IPI00012781 IPI:IPI00016809 IPI:IPI00220960 IPI:IPI00220961
IPI:IPI00220962 RefSeq:NP_116564.2 UniGene:Hs.307077
ProteinModelPortal:Q9H1B4 SMR:Q9H1B4 STRING:Q9H1B4
PhosphoSite:Q9H1B4 DMDM:20978537 PaxDb:Q9H1B4 PRIDE:Q9H1B4
Ensembl:ENST00000263032 Ensembl:ENST00000332614
Ensembl:ENST00000361330 Ensembl:ENST00000361708
Ensembl:ENST00000372803 Ensembl:ENST00000473265
Ensembl:ENST00000493509 Ensembl:ENST00000537026 GeneID:55998
KEGG:hsa:55998 CTD:55998 GeneCards:GC0XM101087 H-InvDB:HIX0056181
HGNC:HGNC:8075 HPA:HPA002079 MIM:300319 neXtProt:NX_Q9H1B4
PharmGKB:PA31862 eggNOG:NOG264365 InParanoid:Q9H1B4 OMA:CFLPRAG
OrthoDB:EOG4Q58PS PhylomeDB:Q9H1B4 GenomeRNAi:55998 NextBio:61439
ArrayExpress:Q9H1B4 Bgee:Q9H1B4 CleanEx:HS_NXF5
Genevestigator:Q9H1B4 GermOnline:ENSG00000126952 Uniprot:Q9H1B4
Length = 397
Score = 279 (103.3 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 70/213 (32%), Positives = 109/213 (51%)
Query: 7 NHTLIVLVSSAT-PYVELNNEIK----DKIKLVMAKRYNGDNKALDLSKFYADPDFVEAN 61
N + + VS T PY + N++K + +KL M KRYN +ALDL DPD + +
Sbjct: 78 NQKICIFVSHFTAPY-SVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRD 136
Query: 62 MFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNN 121
+ + L+R N M + I N P+L +LNL NKLY + L + + P+VK L L+ N
Sbjct: 137 IDIILNRRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNK 196
Query: 122 IKDLATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIV 181
++ + NP F++Q AY S +R FPKLL+LD +L P++
Sbjct: 197 LESAWELGKVKGLKLEELWLEG-NPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVI 255
Query: 182 FDLEDNIELPKP-QGSFLCHPEARDILRAFLEQ 213
D+ D+ E KP + +F + ++ FL+Q
Sbjct: 256 VDI-DSSETMKPCKENFTGSETLKHLVLQFLQQ 287
Score = 61 (26.5 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 257 SRNLLRIEEPQRQKSLLSVGKADI-LRALRFLPATKHDLLSFTCD 300
SRN+ +++P Q+ LL K + +L LP T+HD S D
Sbjct: 297 SRNIKILKDPYLQRKLLKHTKCPRNVDSLSALPETQHDFTSILVD 341
>UNIPROTKB|H0Y6A1 [details] [associations]
symbol:NXF3 "Nuclear RNA export factor 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR002075
InterPro:IPR012677 InterPro:IPR015245 Pfam:PF02136 Pfam:PF09162
ProDom:PD043466 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 InterPro:IPR018222
PROSITE:PS50177 EMBL:Z75746 HGNC:HGNC:8073 ChiTaRS:NXF3
ProteinModelPortal:H0Y6A1 Ensembl:ENST00000427570 Uniprot:H0Y6A1
Length = 361
Score = 239 (89.2 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 56/180 (31%), Positives = 96/180 (53%)
Query: 144 KNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNIELPKPQGSFLCHPEA 203
++P F++ + + + ++FPKLL LD Q P + E + LP +GSF
Sbjct: 159 RSPVCTTFSDTSSNINSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGSFFGSEML 218
Query: 204 RDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV--TQGXXXXXXXXXXXXXSRNLL 261
++++ FL+QY+ ++D+ R GL+ AYH+ A +SL + SRN+
Sbjct: 219 KNLVLQFLQQYYLIYDSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIK 278
Query: 262 RIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEIT 321
+++P + LL K DI+ +L LP T+HDL SF D T ++ FSV G+++E++
Sbjct: 279 ILKDPYLRGELLKHTKLDIVDSLSALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVFKEVS 338
Score = 72 (30.4 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 21/86 (24%), Positives = 43/86 (50%)
Query: 7 NHTLIVLVSSA-TPYV---ELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANM 62
N + + V+ A P+ EL +E ++IKL M ++ + +ALD+ + PD V +
Sbjct: 55 NEKISIFVNPAGIPHFVHRELKSEKVEQIKLAMNQQCDVSQEALDIQRLPFYPDMVNRDT 114
Query: 63 FVPLDRSNVMTSVCNIINENLPDLFA 88
+ + M + ++ EN+P + +
Sbjct: 115 KMASNPRKCMAASLDVHEENIPTVMS 140
>UNIPROTKB|F1N016 [details] [associations]
symbol:F1N016 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR002075
InterPro:IPR012677 InterPro:IPR015245 Pfam:PF02136 Pfam:PF09162
ProDom:PD043466 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 InterPro:IPR018222
PROSITE:PS50177 GeneTree:ENSGT00390000007539 EMBL:DAAA02071120
EMBL:DAAA02071121 EMBL:DAAA02071122 EMBL:DAAA02071123
EMBL:DAAA02071124 EMBL:DAAA02071125 EMBL:DAAA02071126
IPI:IPI00685197 Ensembl:ENSBTAT00000030458 OMA:CKESIFG
Uniprot:F1N016
Length = 533
Score = 272 (100.8 bits), Expect = 2.6e-21, P = 2.6e-21
Identities = 97/376 (25%), Positives = 170/376 (45%)
Query: 25 NEIKDKIKLVM--AKRYNGDNKALDLSK---FYADPDFVEANMFVPLDRSNVMTSVCNII 79
NE+ +KI +++ + KAL K D + ++ + + N M + +I
Sbjct: 163 NEVNEKIFILVEPCESPQSVQKALTSEKVEQIKLPGDLMTCDIGMTQNCRNGMAASIHI- 221
Query: 80 NENLPDLFA-LNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTXXXXXXXX 138
+ + LF+ L+LS NK Y L ++ + L +++ +K +
Sbjct: 222 HPGIRPLFSSLDLSNNKPYLLNGLSTIMGNASNTQNLNISNTEVKAEGQM-DKGQQLEPE 280
Query: 139 XXXXXKNPWTECFNEQDAYTS---EVRKIFPKLLKLDDIQLPPPIVFDLEDNIELPKPQG 195
KN C N D T+ + ++FP+LL LD + +E L +G
Sbjct: 281 GMCADKN--AVCTNFPDKSTNIRQTILELFPRLLSLDGQETLSGYKCAIEAPKFLSMCKG 338
Query: 196 SFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVT--QGXXXXXXXXXX 253
F + + FL+QY+ + D +R GL+D YHE A + L +
Sbjct: 339 KFFESDQVNSQILQFLQQYYLIHDYGNRQGLLDFYHEEACFFLTIPFHPKDSGLSSVHLY 398
Query: 254 XXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGLIQFSV 313
+RN ++++P+ + +L K DI+RAL LP T+HD SF D +T + FSV
Sbjct: 399 FKDNRNTEKLKDPKLRVQMLKHTKHDIVRALCALPKTQHDFSSFEVDMCFHTETMFCFSV 458
Query: 314 CGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQAEKAFS-SQ 372
G+++E+ ++ + AF R F P S I N++LF+ A+P +A++ S SQ
Sbjct: 459 SGVFKEVEGISQG---CVCAFTRTFTTTPTSSSSLCIVNEELFVREASPSEAQRLHSPSQ 515
Query: 373 -VTASESTCS-TPVSN 386
+ +CS +P+S+
Sbjct: 516 CLHCRPRSCSASPLSS 531
>POMBASE|SPBC1921.03c [details] [associations]
symbol:mex67 "mRNA export receptor, Tap, nucleoporin
Mex67" species:4896 "Schizosaccharomyces pombe" [GO:0000055
"ribosomal large subunit export from nucleus" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005643 "nuclear pore" evidence=ISO] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005819 "spindle" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA
export from nucleus" evidence=IGI] [GO:0031965 "nuclear membrane"
evidence=IDA] [GO:0042272 "nuclear RNA export factor complex"
evidence=IPI] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] InterPro:IPR001611 InterPro:IPR005637
InterPro:IPR009060 Pfam:PF03943 PROSITE:PS51281 PROSITE:PS51450
SMART:SM00804 PomBase:SPBC1921.03c GO:GO:0005829 GO:GO:0005730
GO:GO:0005819 EMBL:CU329671 GO:GO:0031965 GO:GO:0005643
GenomeReviews:CU329671_GR SUPFAM:SSF46934 GO:GO:0042272
GO:GO:0000055 InterPro:IPR018222 PROSITE:PS50177 GO:GO:0016973
KO:K14284 EMBL:AF055036 EMBL:AB027816 PIR:T43683 RefSeq:NP_595996.1
ProteinModelPortal:Q9Y8G3 STRING:Q9Y8G3 EnsemblFungi:SPBC1921.03c.1
GeneID:2540727 KEGG:spo:SPBC1921.03c OMA:GFVITLH OrthoDB:EOG4H49CN
NextBio:20801849 Uniprot:Q9Y8G3
Length = 596
Score = 263 (97.6 bits), Expect = 4.2e-20, P = 4.2e-20
Identities = 104/390 (26%), Positives = 163/390 (41%)
Query: 14 VSSATPYVELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLD-RSNVM 72
VS P + NE +K++ + RY K LDL DP + + +S +
Sbjct: 145 VSKTLP--QSTNETIEKLRQFLQTRYQPATKFLDLGNLQQDPLLKQMGILAEASTKSKMF 202
Query: 73 TSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATI---R 129
++ + + N PD+ +++LS+N L ++ +LA+ P++ L LA+N I L+ +
Sbjct: 203 PALMKVASLNFPDVISVSLSDNNLQSVTAVTTLAQTWPKLLNLSLANNRITSLSDLDPWS 262
Query: 130 TXXXXXXXXXXXXXKNPWTECF-NEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNI 188
NP F N Y E+ FPKL LD + I+ + +
Sbjct: 263 PKTKLPELQELVLVGNPIVTTFANRAMDYQREMVSRFPKLRLLDGNSINSEIIAS-QSTV 321
Query: 189 ELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDA-YHENAQYSLVVTQGXXXX 247
P Q SF E I+ +FL +F +D E+R+ L++ Y NA +S+ +
Sbjct: 322 PFPVYQ-SFFDKVETEQIVNSFLAAFFKGWD-ENRSALVNQLYSPNATFSISLNASNVRT 379
Query: 248 XXXXXXXXX--------SRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTC 299
SRNLL + + KS L G +I A++ LPAT HDL S
Sbjct: 380 NFSQKTDTKKWGAYKMKSRNLLYSQSQKESKSRLFNGHEEISNAVKSLPATAHDL-SDRS 438
Query: 300 DCPLYTPGLIQFSVCGLYEEITTGT----KNKSKLIRAFNRAFLLVPRSGGGFAITNDQL 355
L+ SV + + G +NK +L+R+F+R L++P G I ND L
Sbjct: 439 QWVFDGWNLVLPSVGAAIKIVVHGQFEEPQNK-RLLRSFDRTLLILPGGSTGILIINDLL 497
Query: 356 FITSATPEQAEKAFSSQVTASESTCSTPVS 385
I S S V S + S S
Sbjct: 498 VIRSFAGSLGWLPGQSSVRTSNNAMSASAS 527
Score = 204 (76.9 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 65/204 (31%), Positives = 105/204 (51%)
Query: 257 SRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLS---FTCD-CPLYTPGL---I 309
SRNLL + + KS L G +I A++ LPAT HDL + D L P + I
Sbjct: 397 SRNLLYSQSQKESKSRLFNGHEEISNAVKSLPATAHDLSDRSQWVFDGWNLVLPSVGAAI 456
Query: 310 QFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSAT------PE 363
+ V G +EE +NK +L+R+F+R L++P G I ND L I S P
Sbjct: 457 KIVVHGQFEE----PQNK-RLLRSFDRTLLILPGGSTGILIINDLLVIRSFAGSLGWLPG 511
Query: 364 QAE-KAFSSQVTASESTCST---PVSNEILI--KQNMVKALSQVSGMNLNFSEKCLNEVQ 417
Q+ + ++ ++AS S S P + ++ +Q +V + +G+N ++ C +
Sbjct: 512 QSSVRTSNNAMSASASKPSDIVQPRPEQAMLDTRQQIVLKIKAETGLNDYYAHMCCEQNN 571
Query: 418 WDYDQAVTIFNQLKAKNALPSEAF 441
WDY+ A+ F +LK++N +P+EAF
Sbjct: 572 WDYNSALASFLELKSRNVIPAEAF 595
>FB|FBgn0263232 [details] [associations]
symbol:Nxf3 "Nuclear export factor 3" species:7227
"Drosophila melanogaster" [GO:0006406 "mRNA export from nucleus"
evidence=ISS] InterPro:IPR001611 PROSITE:PS51450 EMBL:AE014296
InterPro:IPR018222 PROSITE:PS50177 KO:K14284
GeneTree:ENSGT00390000007539 CTD:56000 RefSeq:NP_729938.1
UniGene:Dm.4431 ProteinModelPortal:Q8IQK4 SMR:Q8IQK4 STRING:Q8IQK4
PRIDE:Q8IQK4 EnsemblMetazoa:FBtr0333073 GeneID:317878
KEGG:dme:Dmel_CG32135 UCSC:CG32135-RA FlyBase:FBgn0263232
InParanoid:Q8IQK4 OMA:NIANCAG OrthoDB:EOG4SN03V PhylomeDB:Q8IQK4
GenomeRNAi:317878 NextBio:844040 ArrayExpress:Q8IQK4 Bgee:Q8IQK4
Uniprot:Q8IQK4
Length = 559
Score = 243 (90.6 bits), Expect = 7.7e-18, P = 7.7e-18
Identities = 109/422 (25%), Positives = 179/422 (42%)
Query: 22 ELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLDRSNVMTSVCNIINE 81
++ +E I+ + RY D++ LDLS+F+A P+ + F PL ++ +V + N
Sbjct: 114 QITDEFTTAIQEALRSRYEVDSRTLDLSRFHASPEL--SLHFCPLHMVKLLETVLVLSNH 171
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTXXXXXXXXXXX 141
P + +L LS N L ++ ++ ++ L ++ N I+DL +
Sbjct: 172 LFPHVTSLVLSNNYLCSLKAFAGNSQSFASLERLDISANRIQDLGELNYINKLSCKTIFL 231
Query: 142 XXKNPWTECFNEQDAYTSEVRKIFPKLLKLDD-IQLPPPIVFDLEDNIELPKPQGSFLCH 200
N + D +RK+ P+L + +QL + DNI PK Q
Sbjct: 232 AG-NGLAKL--SVDV----IRKMLPQLKNVHGCVQLGEST--EAVDNI--PKSQQLQGGG 280
Query: 201 PEARDILRAFLEQYFALFD-TESRAGLIDAYHENAQYSLVVTQGXXXXXXXXXXXXXSRN 259
+ F+ Y+ FD TE R L Y + A +SL V +RN
Sbjct: 281 TNGLKFCQDFISSYYTFFDDTEERFKLKKYYDDQAMFSLSVP---VQLNYVYGYKLYNRN 337
Query: 260 LLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGLIQFSVCGLYEE 319
R Q + L VG+A +L AL LP DL + D ++T L F++ G ++E
Sbjct: 338 QKRQHSSFAQNAKLQVGRAALLLALSRLPLMHTDLENVGLDIQVFTSSLRIFTLTGYFKE 397
Query: 320 ITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQAEKAFSSQVTASEST 379
I++ T R F R F+L + G+ ITND L ITS P+ + + + +
Sbjct: 398 ISSDTLEP----RRFQRTFVLQTSNSPGWLITNDMLCITSTMPDPKK---TIKFKPETNM 450
Query: 380 CSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQLKAKNALPSE 439
+T S E I + V L + S ++ S + ++AV + L + LPSE
Sbjct: 451 INTDPSVE-KINKPAVTVLDRKSKEDVQISRPLSGKELNPLNKAVQKMS-LSQVDHLPSE 508
Query: 440 AF 441
F
Sbjct: 509 NF 510
>UNIPROTKB|E9PE86 [details] [associations]
symbol:NXF3 "Nuclear RNA export factor 3" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] InterPro:IPR002075
Pfam:PF02136 GO:GO:0006810 GO:GO:0005622 InterPro:IPR018222
PROSITE:PS50177 EMBL:Z75746 HGNC:HGNC:8073 ChiTaRS:NXF3
IPI:IPI00909092 SMR:E9PE86 Ensembl:ENST00000425644 Uniprot:E9PE86
Length = 203
Score = 214 (80.4 bits), Expect = 5.8e-17, P = 5.8e-17
Identities = 55/177 (31%), Positives = 89/177 (50%)
Query: 213 QYFALFDTESRAGLIDAYHENAQYSLVV--TQGXXXXXXXXXXXXXSRNLLRIEEPQRQK 270
+Y+ ++D+ R GL+ AYH+ A +SL + SRN+ +++P +
Sbjct: 23 RYYLIYDSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIKILKDPYLRG 82
Query: 271 SLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKL 330
LL K DI+ +L LP T+HDL SF D T ++ FSV G+++E+ G S L
Sbjct: 83 ELLKHTKLDIVDSLSALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVFKEVE-GQSQGSVL 141
Query: 331 IRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQAEKAFSSQVTASESTCSTPVSNE 387
AF R F+ P S I ND+LF+ + + + A + V + S+ S P ++
Sbjct: 142 --AFTRTFIATPGSSSSLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSS-SVPAFSQ 195
>CGD|CAL0005845 [details] [associations]
symbol:MEX67 species:5476 "Candida albicans" [GO:0006406
"mRNA export from nucleus" evidence=ISS] [GO:0005643 "nuclear pore"
evidence=ISS] [GO:0031965 "nuclear membrane" evidence=IEA]
[GO:0042272 "nuclear RNA export factor complex" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005819 "spindle" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IEA] [GO:0017056 "structural constituent of
nuclear pore" evidence=IEA] [GO:0000055 "ribosomal large subunit
export from nucleus" evidence=IEA] [GO:0016973 "poly(A)+ mRNA
export from nucleus" evidence=IEA] InterPro:IPR001611
InterPro:IPR005637 InterPro:IPR009060 Pfam:PF03943 PROSITE:PS51281
PROSITE:PS51450 SMART:SM00804 CGD:CAL0005845 GO:GO:0005737
GO:GO:0005643 GO:GO:0006406 SUPFAM:SSF46934 EMBL:AACQ01000055
EMBL:AACQ01000054 InterPro:IPR018222 PROSITE:PS50177
RefSeq:XP_717351.1 RefSeq:XP_717440.1 PDB:1Q40 PDBsum:1Q40
ProteinModelPortal:P84149 SMR:P84149 STRING:P84149 GeneID:3640921
GeneID:3641020 KEGG:cal:CaO19.488 KEGG:cal:CaO19.8118
eggNOG:NOG324438 KO:K14284 EvolutionaryTrace:P84149 Uniprot:P84149
Length = 617
Score = 194 (73.4 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 68/285 (23%), Positives = 124/285 (43%)
Query: 29 DKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLD-RSNVMTSVCNIINENLPDLF 87
+ I + RY + K L+LS DP F L S ++ + ++ D+
Sbjct: 128 ETISQFLKARYQPEIKMLNLSNVKQDPTLTAQGFFGSLSVSSKFFPALMKVASDLKLDVD 187
Query: 88 ALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRT-XXXXXXXXXXXXXKNP 146
+++LS N+L ++L S+A+ P+++ L L +NN + T NP
Sbjct: 188 SIDLSNNELQDLQTLTSMAQTFPKLQNLSLQNNNFTKIKVFETWRHKLNFLRELILFNNP 247
Query: 147 WTECFNEQDAYTS--EVRKIFPKLLKLDDIQLPPPIVFDLEDNIELP--KPQGSFLCHPE 202
+ + + T E+ K FP+L+ L L V L N+ P P+ F +
Sbjct: 248 IVQTNDPAEIQTIKLELMKSFPRLVVLSGEILRNEQV--LIANLSFPFESPETMFFQDED 305
Query: 203 ARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV-----------TQGXXXXXXXX 251
+R++ F+ Y L+D +R+ L+ Y +Q+S+ V G
Sbjct: 306 SRNLATNFIANYLKLWDA-NRSELMILYQNESQFSMQVDSSHPHLIESGNSGYSGSTDFG 364
Query: 252 XXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLS 296
SRNL R+ + + + LS+G+ I ++ + LP T+HD+++
Sbjct: 365 YYLNNSRNLTRVSSIKARMAKLSIGQEQIYKSFQQLPKTRHDIIA 409
Score = 75 (31.5 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 25/85 (29%), Positives = 39/85 (45%)
Query: 358 TSATPEQAEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQ 417
T TP+ A + TA N+I ++ +VK L + +N+N+ +
Sbjct: 537 TITTPQLAPPG-TGPTTADLPADIKARLNQIQ-QELLVKILLETK-LNINYGIMLCEQSN 593
Query: 418 WDYDQAVTIFNQLKAKNALPSEAFI 442
WDY QA F A +LPS+AF+
Sbjct: 594 WDYQQASVNFKNSAA--SLPSDAFV 616
Score = 68 (29.0 bits), Expect = 8.4e-15, Sum P(2) = 8.4e-15
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 322 TGTKNKSKLI--RAFNRAFLLVPRSGGGFAITNDQLFI---TSATPEQAEKAFSSQVTAS 376
+G K+K + ++F+R F+++P G + +D L I TS P + +K S+ A+
Sbjct: 462 SGPKHKRIPLSKKSFDRTFVVIPGPNGSMIVASDTLLIRPYTSDFPWKVQKLPSNPTAAT 521
Query: 377 E--STCSTP 383
S STP
Sbjct: 522 PGVSATSTP 530
>UNIPROTKB|P84149 [details] [associations]
symbol:MEX67 "mRNA export factor MEX67" species:237561
"Candida albicans SC5314" [GO:0005643 "nuclear pore" evidence=ISS]
[GO:0006406 "mRNA export from nucleus" evidence=ISS]
InterPro:IPR001611 InterPro:IPR005637 InterPro:IPR009060
Pfam:PF03943 PROSITE:PS51281 PROSITE:PS51450 SMART:SM00804
CGD:CAL0005845 GO:GO:0005737 GO:GO:0005643 GO:GO:0006406
SUPFAM:SSF46934 EMBL:AACQ01000055 EMBL:AACQ01000054
InterPro:IPR018222 PROSITE:PS50177 RefSeq:XP_717351.1
RefSeq:XP_717440.1 PDB:1Q40 PDBsum:1Q40 ProteinModelPortal:P84149
SMR:P84149 STRING:P84149 GeneID:3640921 GeneID:3641020
KEGG:cal:CaO19.488 KEGG:cal:CaO19.8118 eggNOG:NOG324438 KO:K14284
EvolutionaryTrace:P84149 Uniprot:P84149
Length = 617
Score = 194 (73.4 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 68/285 (23%), Positives = 124/285 (43%)
Query: 29 DKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLD-RSNVMTSVCNIINENLPDLF 87
+ I + RY + K L+LS DP F L S ++ + ++ D+
Sbjct: 128 ETISQFLKARYQPEIKMLNLSNVKQDPTLTAQGFFGSLSVSSKFFPALMKVASDLKLDVD 187
Query: 88 ALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRT-XXXXXXXXXXXXXKNP 146
+++LS N+L ++L S+A+ P+++ L L +NN + T NP
Sbjct: 188 SIDLSNNELQDLQTLTSMAQTFPKLQNLSLQNNNFTKIKVFETWRHKLNFLRELILFNNP 247
Query: 147 WTECFNEQDAYTS--EVRKIFPKLLKLDDIQLPPPIVFDLEDNIELP--KPQGSFLCHPE 202
+ + + T E+ K FP+L+ L L V L N+ P P+ F +
Sbjct: 248 IVQTNDPAEIQTIKLELMKSFPRLVVLSGEILRNEQV--LIANLSFPFESPETMFFQDED 305
Query: 203 ARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV-----------TQGXXXXXXXX 251
+R++ F+ Y L+D +R+ L+ Y +Q+S+ V G
Sbjct: 306 SRNLATNFIANYLKLWDA-NRSELMILYQNESQFSMQVDSSHPHLIESGNSGYSGSTDFG 364
Query: 252 XXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLS 296
SRNL R+ + + + LS+G+ I ++ + LP T+HD+++
Sbjct: 365 YYLNNSRNLTRVSSIKARMAKLSIGQEQIYKSFQQLPKTRHDIIA 409
Score = 75 (31.5 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 25/85 (29%), Positives = 39/85 (45%)
Query: 358 TSATPEQAEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQ 417
T TP+ A + TA N+I ++ +VK L + +N+N+ +
Sbjct: 537 TITTPQLAPPG-TGPTTADLPADIKARLNQIQ-QELLVKILLETK-LNINYGIMLCEQSN 593
Query: 418 WDYDQAVTIFNQLKAKNALPSEAFI 442
WDY QA F A +LPS+AF+
Sbjct: 594 WDYQQASVNFKNSAA--SLPSDAFV 616
Score = 68 (29.0 bits), Expect = 8.4e-15, Sum P(2) = 8.4e-15
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 322 TGTKNKSKLI--RAFNRAFLLVPRSGGGFAITNDQLFI---TSATPEQAEKAFSSQVTAS 376
+G K+K + ++F+R F+++P G + +D L I TS P + +K S+ A+
Sbjct: 462 SGPKHKRIPLSKKSFDRTFVVIPGPNGSMIVASDTLLIRPYTSDFPWKVQKLPSNPTAAT 521
Query: 377 E--STCSTP 383
S STP
Sbjct: 522 PGVSATSTP 530
>DICTYBASE|DDB_G0286455 [details] [associations]
symbol:nxf "putative nuclear RNA export factor"
species:44689 "Dictyostelium discoideum" [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR002075 InterPro:IPR005637
InterPro:IPR009060 Pfam:PF02136 Pfam:PF03943 PROSITE:PS51281
SMART:SM00804 dictyBase:DDB_G0286455 GO:GO:0005634
EMBL:AAFI02000085 InterPro:IPR003603 SMART:SM00446 GO:GO:0051028
SUPFAM:SSF46934 InterPro:IPR018222 PROSITE:PS50177 eggNOG:NOG324438
KO:K14284 RefSeq:XP_637739.1 ProteinModelPortal:Q54LU1
GeneID:8625605 KEGG:ddi:DDB_G0286455 InParanoid:Q54LU1
ProtClustDB:CLSZ2728897 Uniprot:Q54LU1
Length = 383
Score = 215 (80.7 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 77/299 (25%), Positives = 130/299 (43%)
Query: 157 YTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNIELPKPQGSFLCHPEARDILRAFLEQYFA 216
Y EV + FP LL LD + + P D + +P + ++ E + FLE+YF
Sbjct: 103 YRMEVARKFPDLLILDGVPIGPE---DFPPS-PIPPLRPNYCDSQERQQFAFRFLEKYFT 158
Query: 217 LFDTESRAGLIDAYHENAQYSLVVTQGXXXXXXXXXXXXXSRNLLRIEEPQ---RQKSLL 273
FD +SR +I AY E++++S+ RN +++P ++ LL
Sbjct: 159 TFD-KSREEIIKAYTEDSKFSMTFMADSSTLPMRGSTKAYQRNNRNLKKPSDDIKKTQLL 217
Query: 274 SVGKADILRALRFLPATKHDLLSFTCDCPLYTPG--LIQFSVCGLYEEITTGTKNKSKLI 331
G +I + P T H L S D L PG L+ + G Y E +K
Sbjct: 218 YSGYDNIYNFFKLYPVTSHYLASSVIDTFL-APGSPLLNVVIHGHYLETAFNSK------ 270
Query: 332 RAFNRAFLLVPRSGGGFA--------ITNDQLFITSATPEQAEKAFSSQVTASESTCSTP 383
R+++R F+L P G A I N+QL + P VT + + P
Sbjct: 271 RSYDRTFILAPSQPGSEAAKGGWEAIILNEQLHVR---P-YVRLPRLEPVTQPIANITIP 326
Query: 384 VSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQLKAKNALPSEAFI 442
+ E+ + ++ + + + F+++CL+ WD +A+ F LKA N +P++ F+
Sbjct: 327 IGAEM---ETLINDFAVYTKLKPEFAKECLSLSGWDKSKALETFQNLKANNQIPADYFV 382
>ASPGD|ASPL0000041522 [details] [associations]
symbol:mexA species:162425 "Emericella nidulans"
[GO:0000055 "ribosomal large subunit export from nucleus"
evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IMP]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0017056 "structural
constituent of nuclear pore" evidence=IEA] [GO:0005643 "nuclear
pore" evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
[GO:0042272 "nuclear RNA export factor complex" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005819 "spindle" evidence=IEA]
InterPro:IPR002075 InterPro:IPR005637 InterPro:IPR009060
Pfam:PF02136 Pfam:PF03943 PROSITE:PS51281 SMART:SM00804
GO:GO:0005634 EMBL:BN001306 GO:GO:0051028 SUPFAM:SSF46934
InterPro:IPR018222 PROSITE:PS50177 eggNOG:NOG324438 KO:K14284
OMA:GFVITLH EMBL:AACD01000048 RefSeq:XP_660341.1
ProteinModelPortal:Q5B9P3 STRING:Q5B9P3
EnsemblFungi:CADANIAT00010376 GeneID:2873725 KEGG:ani:AN2737.2
HOGENOM:HOG000210955 OrthoDB:EOG4G4KZR Uniprot:Q5B9P3
Length = 669
Score = 155 (59.6 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 79/327 (24%), Positives = 135/327 (41%)
Query: 7 NHTLIVLVSSATPYVELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMF-VP 65
NH+ I + TP + K K+ ++ +RY +K LDLSK DPD V +F
Sbjct: 194 NHS-IPAQNGTTPSTA---DTKSKMTAILGRRYYQQSKLLDLSKLGTDPDLVAMGIFGTT 249
Query: 66 LDRSNVMTSVCNIINENLPDLFA-------LNLSENKLYYPESLISLAKVIPRVKILYLA 118
S ++ + N + A ++L++N+L + +L++ P +K L L+
Sbjct: 250 STESKFFPALMKVWELNFDNATARRDAVESVSLADNQLSNISVVTTLSQTFPDLKNLDLS 309
Query: 119 HNNIKDL-ATIRTXXXXXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLP 177
+NN D A I NP++ N +D + K +P+L L++ Q+
Sbjct: 310 NNNFADAQALIGWRWKFRKLQFLDLTGNPFSADPNFKDT----MLKWYPELKTLNNTQVR 365
Query: 178 PPIVFDLEDNIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHEN-AQY 236
+ +P F H E + I F+ +F +D +RA ++ +++N + +
Sbjct: 366 TDEEIAAQKKTPIPVQAPHF--HDEGQ-IAENFIRAFFTGYDN-NRAEIVSGFYDNNSTF 421
Query: 237 SLVVTQGXXXXXXXXXX-----XXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATK 291
SL V SRNLL+I + S G I LP T+
Sbjct: 422 SLNVNTSAPRALQTEPAPWDPYLKKSRNLLKISHLPARMSRTYTGVEKIKELWTTLPPTR 481
Query: 292 H-DLLS----FTCDC-PLYTPGLIQFS 312
H D+ + + +C P+ PGL S
Sbjct: 482 HPDIAAHPEEWLIECFPI--PGLPDIS 506
Score = 89 (36.4 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 383 PVSNEILIKQN-MVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQLKAKNALPSEAF 441
P ++ ++Q +V LS + M L +SE L+ W+ D A+ F +LK + LP +AF
Sbjct: 604 PGKADVQVQQEQLVMQLSAKTMMTLQYSELALSGNNWNMDAALKNFEELKTQGQLPPDAF 663
Query: 442 I 442
+
Sbjct: 664 L 664
>WB|WBGene00003835 [details] [associations]
symbol:nxf-2 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] PROSITE:PS50102 GO:GO:0005634 GO:GO:0009792
GO:GO:0003723 GO:GO:0051028 InterPro:IPR018222 PROSITE:PS50177
eggNOG:NOG324438 KO:K14284 EMBL:Z81035 PIR:T19315
RefSeq:NP_506568.2 PDB:3NV0 PDBsum:3NV0 ProteinModelPortal:Q9XVS8
SMR:Q9XVS8 IntAct:Q9XVS8 MINT:MINT-6670375 STRING:Q9XVS8
GeneID:179938 KEGG:cel:CELE_C15H11.6 UCSC:C15H11.6.1 CTD:179938
WormBase:C15H11.6 HOGENOM:HOG000017553 InParanoid:Q9XVS8
NextBio:907470 Uniprot:Q9XVS8
Length = 421
Score = 182 (69.1 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 65/239 (27%), Positives = 110/239 (46%)
Query: 145 NPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNIELPKPQGSFLCHPEAR 204
NP E F + Y + ++K FPK LD +++ P + + I +P G + E R
Sbjct: 172 NPVCEKFVQCAEYANFIQKTFPKCSNLDGMEVEPKPDHNRIEQI-IPFRNG-YYGSDEVR 229
Query: 205 DILRAFLEQYFALFD----TESRAGLIDAYHENAQ---YSLVVTQGXXX------XXXXX 251
++ F+ Y+ ++D ++R L+DAY N +++V
Sbjct: 230 TLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNSTFTHTVVCLWDPIKFVMYPDSESYR 289
Query: 252 XXXXXSRNLLRIEE-PQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGLIQ 310
S N+L E + S +S G DI+ AL LPAT H + +F D L + L+
Sbjct: 290 MYLRTSHNVLNQEYFAANRASRISHGAMDIVVALSRLPATIHLMDTFVVDVFLVSATLLG 349
Query: 311 FSVCGLYEEITTGTK--NKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQAEK 367
F++ G + + + K N + F R F++ PR G AI +DQLFI+S + + ++
Sbjct: 350 FTLHGTFRDGPSAIKPENTEEHDNYFTRTFMVAPRGEGKVAIVSDQLFISSMSKRRGDQ 408
Score = 141 (54.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 52/209 (24%), Positives = 93/209 (44%)
Query: 26 EIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLDRSNVMTSVCNIINENLPD 85
EIK ++ V+ Y + L+LS F + +FVE +M + L ++ VM+ V I P
Sbjct: 39 EIK-VVQDVVDGCYVATDDVLNLSNFSKNTEFVERDMLMCLTKTRVMSVVLQHIGYKYPR 97
Query: 86 LFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNI-KDLATIRTXXXXXXXXXXXXXK 144
+ ++ S N+L + + L SL+ + +K L L+HN + K + K
Sbjct: 98 ISGISFSNNRLCHLDHLSSLSSISKFLKFLDLSHNQVLKVFVFLNFITFFSKISSGEELK 157
Query: 145 --------------NPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNIEL 190
NP E F + Y + ++K FPK LD +++ P + + I +
Sbjct: 158 KLGTIPVETVFFEGNPVCEKFVQCAEYANFIQKTFPKCSNLDGMEVEPKPDHNRIEQI-I 216
Query: 191 PKPQGSFLCHPEARDILRAFLEQYFALFD 219
P G + E R ++ F+ Y+ ++D
Sbjct: 217 PFRNG-YYGSDEVRTLVEEFIITYYKIYD 244
>UNIPROTKB|Q9XVS8 [details] [associations]
symbol:nxf-2 "Nuclear RNA export factor 2" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] PROSITE:PS50102 GO:GO:0005634 GO:GO:0009792
GO:GO:0003723 GO:GO:0051028 InterPro:IPR018222 PROSITE:PS50177
eggNOG:NOG324438 KO:K14284 EMBL:Z81035 PIR:T19315
RefSeq:NP_506568.2 PDB:3NV0 PDBsum:3NV0 ProteinModelPortal:Q9XVS8
SMR:Q9XVS8 IntAct:Q9XVS8 MINT:MINT-6670375 STRING:Q9XVS8
GeneID:179938 KEGG:cel:CELE_C15H11.6 UCSC:C15H11.6.1 CTD:179938
WormBase:C15H11.6 HOGENOM:HOG000017553 InParanoid:Q9XVS8
NextBio:907470 Uniprot:Q9XVS8
Length = 421
Score = 182 (69.1 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 65/239 (27%), Positives = 110/239 (46%)
Query: 145 NPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNIELPKPQGSFLCHPEAR 204
NP E F + Y + ++K FPK LD +++ P + + I +P G + E R
Sbjct: 172 NPVCEKFVQCAEYANFIQKTFPKCSNLDGMEVEPKPDHNRIEQI-IPFRNG-YYGSDEVR 229
Query: 205 DILRAFLEQYFALFD----TESRAGLIDAYHENAQ---YSLVVTQGXXX------XXXXX 251
++ F+ Y+ ++D ++R L+DAY N +++V
Sbjct: 230 TLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNSTFTHTVVCLWDPIKFVMYPDSESYR 289
Query: 252 XXXXXSRNLLRIEE-PQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGLIQ 310
S N+L E + S +S G DI+ AL LPAT H + +F D L + L+
Sbjct: 290 MYLRTSHNVLNQEYFAANRASRISHGAMDIVVALSRLPATIHLMDTFVVDVFLVSATLLG 349
Query: 311 FSVCGLYEEITTGTK--NKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQAEK 367
F++ G + + + K N + F R F++ PR G AI +DQLFI+S + + ++
Sbjct: 350 FTLHGTFRDGPSAIKPENTEEHDNYFTRTFMVAPRGEGKVAIVSDQLFISSMSKRRGDQ 408
Score = 141 (54.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 52/209 (24%), Positives = 93/209 (44%)
Query: 26 EIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLDRSNVMTSVCNIINENLPD 85
EIK ++ V+ Y + L+LS F + +FVE +M + L ++ VM+ V I P
Sbjct: 39 EIK-VVQDVVDGCYVATDDVLNLSNFSKNTEFVERDMLMCLTKTRVMSVVLQHIGYKYPR 97
Query: 86 LFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNI-KDLATIRTXXXXXXXXXXXXXK 144
+ ++ S N+L + + L SL+ + +K L L+HN + K + K
Sbjct: 98 ISGISFSNNRLCHLDHLSSLSSISKFLKFLDLSHNQVLKVFVFLNFITFFSKISSGEELK 157
Query: 145 --------------NPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNIEL 190
NP E F + Y + ++K FPK LD +++ P + + I +
Sbjct: 158 KLGTIPVETVFFEGNPVCEKFVQCAEYANFIQKTFPKCSNLDGMEVEPKPDHNRIEQI-I 216
Query: 191 PKPQGSFLCHPEARDILRAFLEQYFALFD 219
P G + E R ++ F+ Y+ ++D
Sbjct: 217 PFRNG-YYGSDEVRTLVEEFIITYYKIYD 244
>SGD|S000006090 [details] [associations]
symbol:MEX67 "Poly(A)RNA binding protein involved in nuclear
mRNA export" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=ISM]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006406 "mRNA
export from nucleus" evidence=IMP] [GO:0017056 "structural
constituent of nuclear pore" evidence=IDA] [GO:0042272 "nuclear RNA
export factor complex" evidence=IPI] [GO:0000055 "ribosomal large
subunit export from nucleus" evidence=IGI;IMP] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0005643 "nuclear pore"
evidence=IDA] InterPro:IPR001611 InterPro:IPR005637
InterPro:IPR009060 Pfam:PF03943 PROSITE:PS51281 PROSITE:PS51450
SMART:SM00804 SGD:S000006090 GO:GO:0005737 GO:GO:0005643
GO:GO:0003723 EMBL:BK006949 GO:GO:0006406 EMBL:X96770
SUPFAM:SSF46934 GO:GO:0042272 GO:GO:0000055 InterPro:IPR018222
PROSITE:PS50177 TCDB:9.A.14.1.1 GO:GO:0017056 eggNOG:NOG324438
KO:K14284 OMA:GFVITLH OrthoDB:EOG4H49CN EMBL:Z73525 PIR:S65180
RefSeq:NP_015156.1 PDB:1OF5 PDB:2JP7 PDB:2KHH PDBsum:1OF5
PDBsum:2JP7 PDBsum:2KHH ProteinModelPortal:Q99257 SMR:Q99257
DIP:DIP-3984N IntAct:Q99257 MINT:MINT-441559 STRING:Q99257
PaxDb:Q99257 PeptideAtlas:Q99257 EnsemblFungi:YPL169C GeneID:855934
KEGG:sce:YPL169C CYGD:YPL169c GeneTree:ENSGT00390000007539
HOGENOM:HOG000248843 EvolutionaryTrace:Q99257 NextBio:980681
Genevestigator:Q99257 GermOnline:YPL169C Uniprot:Q99257
Length = 599
Score = 172 (65.6 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 67/276 (24%), Positives = 122/276 (44%)
Query: 34 VMAKRYNGDNKALDLSKFYADPDFVEANMFVPLD-RSNVMTSVCNIIN-ENLPDLFALNL 91
V+ KRY+ K L+L ++DP+ ++ +F + +S + ++ + + E + ++NL
Sbjct: 110 VLLKRYDPQTKLLNLGALHSDPELIQKGVFSSISTQSKMFPAMMKLASTEKSLIVESVNL 169
Query: 92 SENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRT-XXXXXXXXXXXXXKNPWTEC 150
++N+L ++ +LA+ P +K L LA+N I ++ NP T
Sbjct: 170 ADNQLKDISAISTLAQTFPNLKNLCLANNQIFRFRSLEVWKNKFKDLRELLMTNNPITT- 228
Query: 151 FNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFD---LEDNIELP-KPQGSFLCHPEARDI 206
Y +E+ ++FPKL+ LD++ IV D L+ LP K Q F +
Sbjct: 229 ---DKLYRTEMLRLFPKLVVLDNV-----IVRDEQKLQTVYSLPMKIQQFFFENDALGQS 280
Query: 207 LRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQ--------GXXXXXXXXXXXXXSR 258
F + L+D +R L++ Y +Q+S+ V SR
Sbjct: 281 STDFATNFLNLWDN-NREQLLNLYSPQSQFSVSVDSTIPPSTVTDSDQTPAFGYYMSSSR 339
Query: 259 NLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDL 294
N+ ++ + + LS+G+ I + LP TKH L
Sbjct: 340 NISKVSSEKSIQQRLSIGQESINSIFKTLPKTKHHL 375
Score = 55 (24.4 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 11/53 (20%), Positives = 26/53 (49%)
Query: 390 IKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQLKAKNALPSEAFI 442
++ ++ L + +N ++ + W+Y+ A+ F + N +P EAF+
Sbjct: 547 VQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS--SMNGIPREAFV 597
Score = 45 (20.9 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 22/93 (23%), Positives = 38/93 (40%)
Query: 317 YEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQAEKAFSSQVTAS 376
Y T N ++F+R +++VP + I +D L + +A+S T +
Sbjct: 428 YNHGYNSTSNNKLSKKSFDRTWVIVPMNNS-VIIASDLLTV---------RAYS---TGA 474
Query: 377 ESTCSTPVSNEILIKQNMVKALSQVSGMNLNFS 409
T S ++ Q L QV+ MN N +
Sbjct: 475 WKTASIAIAQP---PQQQASVLPQVASMNPNIT 504
>UNIPROTKB|H0YDU0 [details] [associations]
symbol:NXF1 "Nuclear RNA export factor 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0051028
"mRNA transport" evidence=IEA] InterPro:IPR002075
InterPro:IPR005637 InterPro:IPR009060 Pfam:PF02136 Pfam:PF03943
PROSITE:PS51281 SMART:SM00804 GO:GO:0005634 EMBL:AP001160
GO:GO:0051028 SUPFAM:SSF46934 HGNC:HGNC:8071 ChiTaRS:NXF1
Ensembl:ENST00000527902 Uniprot:H0YDU0
Length = 124
Score = 141 (54.7 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 363 EQAEKAFSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQ 422
E+ ++AF+ S+ +S E +Q M++A S SGMNL +S+KCL + WDY +
Sbjct: 47 EEIQRAFAMPAPTPSSSPVPTLSPE---QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTR 103
Query: 423 AVTIFNQLKAKNALPSEAFI 442
+ F LKAK +P AF+
Sbjct: 104 SAQAFTHLKAKGEIPEVAFM 123
>FB|FBgn0036640 [details] [associations]
symbol:nxf2 "nuclear RNA export factor 2" species:7227
"Drosophila melanogaster" [GO:0006406 "mRNA export from nucleus"
evidence=ISS;NAS] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=NAS;IDA] [GO:0051028 "mRNA transport"
evidence=IEA] InterPro:IPR001611 InterPro:IPR005637
InterPro:IPR009060 Pfam:PF03943 PROSITE:PS50102 PROSITE:PS51281
PROSITE:PS51450 SMART:SM00804 GO:GO:0005737 GO:GO:0005654
EMBL:AE014296 GO:GO:0003723 InterPro:IPR003603 SMART:SM00446
GO:GO:0051028 SUPFAM:SSF46934 InterPro:IPR018222 PROSITE:PS50177
GeneTree:ENSGT00390000007539 EMBL:AJ312282 EMBL:AY075582
RefSeq:NP_524111.3 RefSeq:NP_730179.2 UniGene:Dm.2730
ProteinModelPortal:Q9VV73 SMR:Q9VV73 STRING:Q9VV73 PaxDb:Q9VV73
PRIDE:Q9VV73 EnsemblMetazoa:FBtr0089478 EnsemblMetazoa:FBtr0089479
GeneID:39843 KEGG:dme:Dmel_CG4118 CTD:56001 FlyBase:FBgn0036640
eggNOG:NOG327555 InParanoid:Q9VV73 OMA:CLEESSW OrthoDB:EOG4J0ZQR
PhylomeDB:Q9VV73 GenomeRNAi:39843 NextBio:815678 Bgee:Q9VV73
GermOnline:CG4118 Uniprot:Q9VV73
Length = 841
Score = 159 (61.0 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 91/432 (21%), Positives = 174/432 (40%)
Query: 31 IKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLDRSNVMTSVCNIINEN-LPDLFAL 89
I+ +++ Y N+ L+L +F++ + + V L ++T V ++ + + +
Sbjct: 422 IQKAVSQCYVAQNRMLNLERFHSRECLKD--VMVSLSSPKILTYVLSVASRKFMTTCSEI 479
Query: 90 NLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTXXXXXXXXXXXXXKNPWTE 149
L NK+ + L ++ ++ + L+HN ++DL++I + N
Sbjct: 480 RLCHNKVLVLDGAHVLG-MMGCLRAVDLSHNWVQDLSSIHSLGNLPLKSLVLHG-NKLCR 537
Query: 150 CFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNIELPKPQGSF-LCHPEARDILR 208
+ Y V+++FP+L LD + L L+ N G++ L + LR
Sbjct: 538 NYRLPSEYVRAVKEVFPQLTTLDGVDLQTNPGQSLQKNFLCDT--GAYELVGAFLENYLR 595
Query: 209 AFLEQYFA--LFDTESRAGLIDAYHENAQYSLVVT-QGXXXXXXXXXXXXXSRNLLRIEE 265
F F L+ S + Y++V Q +RNL R ++
Sbjct: 596 EFENDEFRHNLYKYYSENSIFTL---TCNYNVVQNHQTPKILQRLSKYNRHARNL-RNKD 651
Query: 266 PQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYT-PGLIQFSVCGLYEEITTGT 324
+ + G I+ L LP HD S D Y G + + V GL + T
Sbjct: 652 YSKASDGVFFGCTYIVEILLQLPRVTHDFHSLQTDVMHYNGKGAVIY-VAGLLRDEPPST 710
Query: 325 KNK--SK-----LIRAFNRAFLLV---PRSGGG-----FAITNDQLFITSATPEQAEKAF 369
+N SK ++ F+R F++ G G I N++L IT+ + AF
Sbjct: 711 RNGHGSKTDIGGVLLGFSRQFVVTFDEANLGLGKRARRLKIANERLHITNPSKTAIRNAF 770
Query: 370 SSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQ 429
S V + + + + +K + + +V+G+ + + E WD+++A+ +F Q
Sbjct: 771 S--VNFPDPSERQAEEDSLDVKDHKLLLFQEVTGLISTWVTSIVEEADWDFERALKLFIQ 828
Query: 430 LKAKNALPSEAF 441
A + +P AF
Sbjct: 829 KNADHEIPDLAF 840
>FB|FBgn0051501 [details] [associations]
symbol:nxf4 "nuclear export factor 4" species:7227
"Drosophila melanogaster" [GO:0006405 "RNA export from nucleus"
evidence=ISS] InterPro:IPR001611 PROSITE:PS51450 EMBL:AE014297
KO:K14284 RefSeq:NP_731156.1 ProteinModelPortal:Q8INS6 SMR:Q8INS6
PRIDE:Q8INS6 EnsemblMetazoa:FBtr0081583 GeneID:40884
KEGG:dme:Dmel_CG31501 UCSC:CG31501-RA CTD:55999 FlyBase:FBgn0051501
eggNOG:NOG323931 InParanoid:Q8INS6 OrthoDB:EOG4RV16P
PhylomeDB:Q8INS6 GenomeRNAi:40884 NextBio:821111
ArrayExpress:Q8INS6 Bgee:Q8INS6 Uniprot:Q8INS6
Length = 301
Score = 148 (57.2 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 47/176 (26%), Positives = 81/176 (46%)
Query: 14 VSSATPYVELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLDRSNVMT 73
VS P + +N+ ++ + +V+ RY+ ++LDL+ FY D F L SN M+
Sbjct: 121 VSDRMPKIWINSILRLHLTMVLLDRYDPVERSLDLTLFYKDKAL--CGEFFALAESNCMS 178
Query: 74 SVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTXXX 133
+V I++ +P+L L L N L + + PR+ + L HN+I+++ ++R
Sbjct: 179 TVLGIVDREMPELERLILDGNHLTNLWVFRKVERRFPRLHSISLKHNDIENIYSLRNLQF 238
Query: 134 XXXXXXXXXXKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPP-PIVFDLEDNI 188
NP Y EV I+P L L+ IQ+ P P + L + +
Sbjct: 239 LPLAELNLLD-NPLPA------GYEKEVLDIWPSLQVLNKIQVTPDPAMMQLVERV 287
>UNIPROTKB|F1N4T4 [details] [associations]
symbol:F1N4T4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR002075
InterPro:IPR012677 InterPro:IPR015245 Pfam:PF02136 Pfam:PF09162
ProDom:PD043466 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406
GeneTree:ENSGT00390000007539 EMBL:DAAA02071314 EMBL:DAAA02071315
EMBL:DAAA02071316 EMBL:DAAA02071317 EMBL:DAAA02071318
IPI:IPI00692483 Ensembl:ENSBTAT00000030125 Uniprot:F1N4T4
Length = 440
Score = 145 (56.1 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 35/118 (29%), Positives = 55/118 (46%)
Query: 190 LPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVT--QGXXXX 247
LP +GSF + + FL+ Y+ + D R GL+ YHE A + L +
Sbjct: 321 LPMYKGSFFGSDQVNSQILQFLQHYYLIHDYGDRQGLLGFYHEEACFFLTIPFHSKDSGL 380
Query: 248 XXXXXXXXXSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYT 305
+RN+ +++P + ++ K DI+RAL LP T+HD SF D +T
Sbjct: 381 SSMCAYFLDNRNMKTLKDPNPRVQMMKHTKHDIVRALCALPKTQHDFSSFEVDMCFHT 438
Score = 37 (18.1 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 20 YVELNNEIKDKIKLVMAKRYNGDNKALDL 48
+VE N + +K V K +N DN+ + +
Sbjct: 144 FVE-NANVACALKNVSGKIFNEDNEKISI 171
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 442 416 0.00081 118 3 11 22 0.39 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 53
No. of states in DFA: 608 (65 KB)
Total size of DFA: 243 KB (2132 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:06
No. of threads or processors used: 24
Search cpu time: 32.20u 0.08s 32.28t Elapsed: 00:00:17
Total cpu time: 32.22u 0.08s 32.30t Elapsed: 00:00:23
Start: Thu Aug 15 14:19:59 2013 End: Thu Aug 15 14:20:22 2013