RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1142
(442 letters)
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens}
SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Length = 250
Score = 239 bits (611), Expect = 4e-77
Identities = 88/254 (34%), Positives = 143/254 (56%), Gaps = 8/254 (3%)
Query: 191 PKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHL- 249
P +GS+ + ++ FL+QY+A++D+ R GL+DAYH+ A SL + N
Sbjct: 2 PPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARS 61
Query: 250 -LNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGL 308
L +SRN+ ++++P + LL + +++ L LP T+HD+ SF D T L
Sbjct: 62 SLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTL 121
Query: 309 IQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQAEKA 368
+ FSV G+++E+ +++ +RAF R F+ VP S G I ND+LF+ +A+ E+ ++A
Sbjct: 122 LCFSVNGVFKEVDGKSRD---SLRAFTRTFIAVPASNSGLCIVNDELFVRNASSEEIQRA 178
Query: 369 FSSQVTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFN 428
F+ S+ PV +Q M++A S SGMNL +S+KCL + WDY ++ F
Sbjct: 179 FAMPAPTPSSS---PVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFT 235
Query: 429 QLKAKNALPSEAFI 442
LKAK +P AF+
Sbjct: 236 HLKAKGEIPEVAFM 249
>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet
heterodimer interface, nucleopo binding pocket, water
mediated interface; 1.84A {Caenorhabditis elegans}
Length = 205
Score = 157 bits (397), Expect = 7e-46
Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 16/200 (8%)
Query: 194 QGSFLCHPEARDILRAFLEQYFALFD----TESRAGLIDAYH-ENAQYSLVVT------- 241
+ + E R ++ F+ Y+ ++D ++R L+DAY N+ ++ V
Sbjct: 3 RNGYYGSDEVRTLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNSTFTHTVVCLWDPIK 62
Query: 242 -QGLGNNHLLNNMLANSRNLLRIEE-PQRQKSLLSVGKADILRALRFLPATKHDLLSFTC 299
++ L S N+L E + S +S G DI+ AL LPAT H + +F
Sbjct: 63 FVMYPDSESYRMYLRTSHNVLNQEYFAANRASRISHGAMDIVVALSRLPATIHLMDTFVV 122
Query: 300 DCPLYTPGLIQFSVCGLYEEI--TTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFI 357
D L + L+ F++ G + + +N + F R F++ PR G AI +DQLFI
Sbjct: 123 DVFLVSATLLGFTLHGTFRDGPSAIKPENTEEHDNYFTRTFMVAPRGEGKVAIVSDQLFI 182
Query: 358 TSATPEQAEKAFSSQVTASE 377
+S + + ++ TA++
Sbjct: 183 SSMSKRRGDQYRMLVETATD 202
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 155 bits (392), Expect = 2e-44
Identities = 73/186 (39%), Positives = 113/186 (60%), Gaps = 5/186 (2%)
Query: 1 RIKTVTNHTLIVLVSSATPYV----ELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPD 56
+I N + ++++S+ P EL E +++KL+M+KRY+G +ALDL +DPD
Sbjct: 83 KILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPD 142
Query: 57 FVEANMFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILY 116
V N+ V L+R + M + II EN+P+L +LNLS N+LY + + S+ + P +KIL
Sbjct: 143 LVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN 202
Query: 117 LAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQL 176
L+ N +K + ++ L LEEL L+ N + F +Q Y S +R+ FPKLL+LD +L
Sbjct: 203 LSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL 261
Query: 177 PPPIVF 182
PPPI F
Sbjct: 262 PPPIAF 267
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export,
translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Length = 219
Score = 146 bits (370), Expect = 6e-42
Identities = 45/214 (21%), Positives = 89/214 (41%), Gaps = 41/214 (19%)
Query: 192 KPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLN 251
P+ F ++R++ F+ Y L+D +R+ L+ Y +Q+S+ V +
Sbjct: 2 SPETMFFQDEDSRNLATNFIANYLKLWDA-NRSELMILYQNESQFSMQVDSSHPHLIESG 60
Query: 252 NM-----------LANSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLS---- 296
N L NSRNL R+ + + + LS+G+ I ++ + LP T+HD+++
Sbjct: 61 NSGYSGSTDFGYYLNNSRNLTRVSSIKARMAKLSIGQEQIYKSFQQLPKTRHDIIATPEL 120
Query: 297 FTCDCPLY-TPGLIQFSVCGLYEEITTG------------------------TKNKSKLI 331
F+ + + T I ++ G ++E+ K
Sbjct: 121 FSMEVYKFPTLNGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRYHSGPKHKRIPLSK 180
Query: 332 RAFNRAFLLVPRSGGGFAITNDQLFITSATPEQA 365
++F+R F+++P G + +D L I T +
Sbjct: 181 KSFDRTFVVIPGPNGSMIVASDTLLIRPYTSDFP 214
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich
repeat, nuclear transport; 2.8A {Saccharomyces
cerevisiae} SCOP: d.17.4.2
Length = 221
Score = 138 bits (349), Expect = 1e-38
Identities = 40/223 (17%), Positives = 82/223 (36%), Gaps = 40/223 (17%)
Query: 194 QGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHL---- 249
Q F + F + L+D +R L++ Y +Q+S+ V + + +
Sbjct: 1 QQFFFENDALGQSSTDFATNFLNLWDN-NREQLLNLYSPQSQFSVSVDSTIPPSTVTDSD 59
Query: 250 ----LNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLS----FTCDC 301
+++SRN+ ++ + + LS+G+ I + LP TKH L ++ +
Sbjct: 60 QTPAFGYYMSSSRNISKVSSEKSIQQRLSIGQESINSIFKTLPKTKHHLQEQPNEYSMET 119
Query: 302 PLY-TPGLIQFSVCGLYEEITTG-------------------------TKNKSKLIRAFN 335
Y ++ G +EE T N ++F+
Sbjct: 120 ISYPQINGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHGYNSTSNNKLSKKSFD 179
Query: 336 RAFLLVPRSGGGFAITNDQLFITSATPEQAEKAFSSQVTASES 378
R +++VP I +D L + + + + A + A+ S
Sbjct: 180 RTWVIVP-MNNSVIIASDLLTVRAYSTGAWKTASIAIAQAAGS 221
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport
factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Length = 59
Score = 78.7 bits (194), Expect = 1e-18
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 391 KQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQLKAKNALPSEAFI 442
+Q M++A S SGMNL +S+KCL + WDY ++ F LKAK +P AF+
Sbjct: 7 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAFM 58
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 69.4 bits (170), Expect = 3e-14
Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 14/154 (9%)
Query: 26 EIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEAN--MFVPLDR----SNVMTSVCNII 79
++K +I L + R + L L ++ +E FV L+ + + SV N+
Sbjct: 9 DMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNL- 67
Query: 80 NENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
LP L L LSEN+++ L LA+ +P + L L+ N +KD++T+ L+ L L+
Sbjct: 68 -PKLPKLKKLELSENRIF--GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124
Query: 140 LRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDD 173
L L T + Y V K+ P+L LD
Sbjct: 125 LDLFNCEVT----NLNDYRESVFKLLPQLTYLDG 154
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 60.8 bits (148), Expect = 2e-11
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 70 NVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIR 129
+TS+ N+ L L L LS+N++ L LA+ P + L L+ N IKDL+TI
Sbjct: 52 VGLTSIANL--PKLNKLKKLELSDNRV--SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIE 107
Query: 130 TLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLD 172
L+ L NL+ L L T + Y V K+ P+L LD
Sbjct: 108 PLKKLENLKSLDLFNCEVTNLND----YRENVFKLLPQLTYLD 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 58.5 bits (142), Expect = 3e-10
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATI 128
N++ + N+ + L L +S N++ + L +++LY+++N I + I
Sbjct: 79 RNLIKKIENL-DAVADTLEELWISYNQIASLSGIEKL----VNLRVLYMSNNKITNWGEI 133
Query: 129 RTLESLSNLEELRLEKNPWTECFNEQDA---YTSEVRKIFPKLLKLDDI 174
L +L LE+L L NP + E +A Y EV K P L KLD +
Sbjct: 134 DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM 182
Score = 37.7 bits (88), Expect = 0.003
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L L LS N + SL + ++IL L N IK + + + LEEL
Sbjct: 45 STLKACKHLALSTNNIEKISSLSGM----ENLRILSLGRNLIKKIENLDAV--ADTLEEL 98
Query: 141 RLEKN 145
+ N
Sbjct: 99 WISYN 103
Score = 34.7 bits (80), Expect = 0.030
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 89 LNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145
L+ + E + + + K L L+ NNI+ I +L + NL L L +N
Sbjct: 30 LHGMIPPI---EKMDATLSTLKACKHLALSTNNIE---KISSLSGMENLRILSLGRN 80
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 7e-10
Identities = 62/324 (19%), Positives = 94/324 (29%), Gaps = 111/324 (34%)
Query: 41 GDNKA-LD-LSKFYADP-----DFVE--ANMFVPL-----DRSNVMTSVCNIIN-----E 81
G+ + L Y D ++ A L D V T NI+
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 82 NLPDLFALNLSENKLYYPES-----LISLAKVIPRVKILYLAHNNIKD------------ 124
N PD L L P S +I LA + K+L ++
Sbjct: 224 NTPDKDYL------LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 125 -----LATIRTLESLSNLEELRLEKNPW--TECFNEQDAYTSEVRKIFPKLLKLDDIQLP 177
+A + ES + + C +AY P LP
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRC---YEAY--------PNT------SLP 320
Query: 178 PPIVFDLEDNIE-LPKPQGSFLCHPEARDILRAFLEQYFALFDT---ESRA---GLIDAY 230
P I+ D +N E +P P L ++ + ++ Y ++ + L+
Sbjct: 321 PSILEDSLENNEGVPSPM---LS---ISNLTQEQVQDYVNKTNSHLPAGKQVEISLV--- 371
Query: 231 HENAQYSLVVT------QGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRAL 284
N +LVV+ GL N L + + RI +R K S
Sbjct: 372 --NGAKNLVVSGPPQSLYGL-NLTLRKAKAPSGLDQSRIPFSER-KLKFSN--------- 418
Query: 285 RFLPATK--HDLLSFTCDCPLYTP 306
RFLP H L P
Sbjct: 419 RFLPVASPFH--------SHLLVP 434
Score = 51.2 bits (122), Expect = 6e-07
Identities = 61/355 (17%), Positives = 97/355 (27%), Gaps = 119/355 (33%)
Query: 116 YLAHNNIKDLATIRTLESLSNLEELRLEK-NPWTECFNEQDAYTSEVRKIFPKLLKLDDI 174
YL N+I LA L + L K + + T+ I
Sbjct: 95 YLEGNDIHALAA-----KLLQENDTTLVKTKELIKNY-----ITAR-------------I 131
Query: 175 QLPPPIVFDLEDNIELPKPQGSFLCHPEARDILRAFL--------EQYFALFDTESRAGL 226
P K S L + + YF E L
Sbjct: 132 MAKRPF----------DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF----EE----L 173
Query: 227 IDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLR--IEEPQRQKSLLSVGKADILRAL 284
D Y Y + L+ +++ S L I + + + G +IL L
Sbjct: 174 RDLYQT---Y----------HVLVGDLIKFSAETLSELIRTTLDAEKVFTQG-LNILEWL 219
Query: 285 RFLPATKHDLLSFTCDCPLYTP--GLIQFS-------VCG-----LYEEITTGTKNKSKL 330
P+ D + P+ P G+IQ + + G L + T + L
Sbjct: 220 E-NPSNTPD-KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 331 IRAFNRAFLLVPRSGGGF------AITNDQLFI-----TSATPEQA--EKAFSSQVTASE 377
+ A + S F AIT LF A P + + +E
Sbjct: 278 VTA---VAIAETDSWESFFVSVRKAITV--LFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 378 STCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEV--QWDYDQAVTI--FN 428
+P M LS +S + + +N+ + V I N
Sbjct: 333 GV-PSP----------M---LS-ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Score = 40.0 bits (93), Expect = 0.002
Identities = 49/291 (16%), Positives = 91/291 (31%), Gaps = 88/291 (30%)
Query: 194 QGS---------FLCHPEARDIL-RA---FLEQY-FALFDTESRAGLIDAYHENAQYSLV 239
QGS + A+D+ RA F + Y F++ +D N +
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSI---------LDIVINNPVNLTI 1674
Query: 240 VTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHD--LLSF 297
G + N A + + + +K + + + F + + LLS
Sbjct: 1675 HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH--STSYTF----RSEKGLLSA 1728
Query: 298 TCDCPLYT-PGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAF----L-----LVPRSGGG 347
T +T P L +E++ KSK + + F L L +
Sbjct: 1729 TQ----FTQPALTLMEKA-AFEDL------KSKGLIPADATFAGHSLGEYAALASLAD-- 1775
Query: 348 FAITNDQL---------FITSATPEQAEKAFSSQVTA-SESTCSTPVSNEILIKQNMVKA 397
++ + L + A P + + A + + S E L Q +V+
Sbjct: 1776 -VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL--QYVVER 1832
Query: 398 LSQVSGM-----NLNFSEKCLNEVQWDY---------DQAVTIFNQLKAKN 434
+ + +G N N N+ Q Y D + N +K +
Sbjct: 1833 VGKRTGWLVEIVNYN----VENQ-Q--YVAAGDLRALDTVTNVLNFIKLQK 1876
Score = 37.0 bits (85), Expect = 0.015
Identities = 40/282 (14%), Positives = 78/282 (27%), Gaps = 76/282 (26%)
Query: 179 PIVF---DLEDNIELPKPQGSFLCHPEA---RDILRAFLEQYFALFDTESRAGLIDAYHE 232
P+ LE + +P A ++ L + TE A +
Sbjct: 8 PLTLSHGSLEHVLLVPTAS-----FFIASQLQEQFNKILPE-----PTEGFAA------D 51
Query: 233 NAQYSLV--VTQGLGNNHLLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRAL--RFLP 288
+ + V + LG ++ + EP + V L +L
Sbjct: 52 DEPTTPAELVGKFLG-------YVS------SLVEPSKVGQFDQVLNL-CLTEFENCYLE 97
Query: 289 ATK-HDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGG 347
H L L +E T +LI+ + A ++ R
Sbjct: 98 GNDIHAL------------------AAKLLQENDTTLVKTKELIKNYITARIMAKRP--- 136
Query: 348 FAITNDQLFITSATPEQAE--KAFSSQVTASESTCSTPVSNEILIK-----QNMVKALSQ 400
F ++ + A+ F Q E L +V L +
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQ-----GNTDDYFE-E-LRDLYQTYHVLVGDLIK 189
Query: 401 VSGMNLNFSEKCLNEVQWDYDQAVTIFNQLKAKNALPSEAFI 442
S L+ + + + + Q + I L+ + P + ++
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Score = 35.4 bits (81), Expect = 0.039
Identities = 61/314 (19%), Positives = 92/314 (29%), Gaps = 107/314 (34%)
Query: 10 LIVLVSSATPYVELNN------EIKDKIK--------LVMAKR----------YNGDNKA 45
LI ++ A V E++ +K LV A + KA
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 46 LDLSKFY-------ADP----------DFVEANMFVP--------LDRSNVMTSVCNIIN 80
+ + F+ A P D +E N VP L + V V N N
Sbjct: 300 ITVL-FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV-NKTN 357
Query: 81 ENLPDLFALNLSENKLY----------YPESLISLAKVIPRVKILYLAHNNIKDLATI-- 128
+LP + +S L P+SL L + + K A + D + I
Sbjct: 358 SHLPAGKQVEIS---LVNGAKNLVVSGPPQSLYGLNLTLRKAK----APSG-LDQSRIPF 409
Query: 129 --RTLE-SLSNLEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPP-----PI 180
R L+ S L P F+ + K L +++ P
Sbjct: 410 SERKLKFSNRFL--------PVASPFHSH--LLVPASDLINKDLVKNNVSFNAKDIQIP- 458
Query: 181 VFDLEDNIELPKPQGSFLCHPEARDILR---------AFLEQYFALFDTESRAGLIDAYH 231
V+D D +L GS + I+R F + F +GL H
Sbjct: 459 VYDTFDGSDLRVLSGS-ISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTH 517
Query: 232 ENAQYSLVVTQGLG 245
N G G
Sbjct: 518 RN-------KDGTG 524
Score = 34.6 bits (79), Expect = 0.070
Identities = 31/151 (20%), Positives = 50/151 (33%), Gaps = 50/151 (33%)
Query: 13 LVSSATPYVELNNEIKDKIKLVMAKR-------YNGDNKALDLSKFYA-DPDFV------ 58
L S A V ++ I+ +++V R D A +P V
Sbjct: 1770 LASLAD--V-MS--IESLVEVV-FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 59 EANMFVPLDRSNVMTSVCNIINENLP--------DLFALNLSENKLYYPESLISLAKVIP 110
EA +V + I+N N+ DL AL+ ++ V+
Sbjct: 1824 EALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALD-------------TVTNVLN 1870
Query: 111 RVKILYLAHNNIKDLATIRTLESLSNLEELR 141
+K+ I I +SLS LEE+
Sbjct: 1871 FIKL-----QKID---IIELQKSLS-LEEVE 1892
Score = 33.1 bits (75), Expect = 0.23
Identities = 25/141 (17%), Positives = 45/141 (31%), Gaps = 32/141 (22%)
Query: 316 LYEEITTGTKNKSKLIRA-FNRA--FLLVPRSGGGFAITNDQLFITSATPEQAEKAFSSQ 372
LY+ SK + +NRA + GF+I + I P F +
Sbjct: 1635 LYK--------TSKAAQDVWNRADNHF---KDTYGFSILD----IVINNPVNLTIHFGGE 1679
Query: 373 ------VTASESTCSTPVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQ---- 422
S T V ++ ++ + + + L+ Q + Q
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ--FTQPALT 1737
Query: 423 --AVTIFNQLKAKNALPSEAF 441
F LK+K +P++A
Sbjct: 1738 LMEKAAFEDLKSKGLIPADAT 1758
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 55.8 bits (135), Expect = 2e-09
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 66 LDRSNVM-TSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKD 124
+D S+ + L L L ++ N++ L + +P + L L +N++ +
Sbjct: 47 IDFSDNEIRKLDGF--PLLRRLKTLLVNNNRICRIGE--GLDQALPDLTELILTNNSLVE 102
Query: 125 LATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDD 173
L + L SL +L L + +NP N++ Y V P++ LD
Sbjct: 103 LGDLDPLASLKSLTYLCILRNP---VTNKKH-YRLYVIYKVPQVRVLDF 147
Score = 38.9 bits (91), Expect = 0.001
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
N L+L K+ + +L + + + + N I+ + L L+ L
Sbjct: 16 TNAVRDRELDLRGYKI---PVIENLGATLDQFDAIDFSDNEIRK---LDGFPLLRRLKTL 69
Query: 141 RLEKN 145
+ N
Sbjct: 70 LVNNN 74
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 58.6 bits (141), Expect = 2e-09
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L L L S+N L + + +L PR++ L L +N ++ A I+ L S L L
Sbjct: 483 AALRCLEVLQASDNALENVDGVANL----PRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538
Query: 141 RLEKNPWTECFNEQDAYTSEVRKIFPKLLKLD 172
L+ N +++ + ++ P + +
Sbjct: 539 NLQGNSLC----QEEGIQERLAEMLPSVSSIL 566
Score = 39.7 bits (92), Expect = 0.001
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 89 LNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145
L+L+ L L L V L L+HN ++ L L +L LE L+ N
Sbjct: 446 LHLAHKDLTVLCHLEQL----LLVTHLDLSHNRLRALPP--ALAALRCLEVLQASDN 496
Score = 29.0 bits (64), Expect = 4.3
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 110 PRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145
V++L+LAH ++ + LE L + L L N
Sbjct: 441 ADVRVLHLAHKDLT---VLCHLEQLLLVTHLDLSHN 473
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR
{Saccharomyces cerevisiae} PDB: 2khh_A
Length = 57
Score = 48.1 bits (114), Expect = 6e-08
Identities = 11/53 (20%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 390 IKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQLKAKNALPSEAFI 442
++ ++ L + +N ++ + W+Y+ A+ F + N +P EAF+
Sbjct: 5 VQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS--SMNGIPREAFV 55
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.9 bits (126), Expect = 2e-07
Identities = 72/466 (15%), Positives = 127/466 (27%), Gaps = 140/466 (30%)
Query: 3 KTVTNHTLIVLVSSATPYVELNNEIKDKIKLVMAKRYNGDNKALD-LSKFY--ADPDFVE 59
KT + + V + + KI + K N L+ L K DP++
Sbjct: 163 KTW----VALDVCLSYKVQCKMD---FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 60 ANMFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISL-----AKVI----P 110
D S+ + + I L L Y L+ L AK
Sbjct: 216 -----RSDHSSNIKLRIHSIQAELRRLLKSKP------YENCLLVLLNVQNAKAWNAFNL 264
Query: 111 RVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLK 170
KIL + L S + + L+ + T EV+ + K L
Sbjct: 265 SCKILLTT----RFKQVTDFL-SAATTTHISLDHHSMT--LTP-----DEVKSLLLKYLD 312
Query: 171 LDDIQLPP------PIVFDL-----EDNI------------ELPKPQGSFLCHPEARDIL 207
LP P + D + +L S L E +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 208 RAFLEQYFALF---------------------DTES------RAGLIDAYHENAQYS--- 237
+ F ++F D + L++ + + S
Sbjct: 373 KMF--DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 238 --LVVTQGLGNNHLLNNMLANSRNLLR-------IEEPQRQ----------KSLLSVGKA 278
L + L N + L+ + + N+ + I Q K++ +
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 279 DILRA----LRFLPAT-KHDLLSFTCDCPLYTPGLIQFSVCGLYEE-ITTGTKNKSKLIR 332
+ R RFL +HD ++ + L Q Y+ I +L+
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSI-LNTLQQLK---FYKPYICDNDPKYERLVN 546
Query: 333 AFNRAFLLVPRSGGG-----------FAITNDQLFITSATPEQAEK 367
A FL P+ A+ + I +Q ++
Sbjct: 547 AILD-FL--PKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 31.0 bits (69), Expect = 1.1
Identities = 30/251 (11%), Positives = 79/251 (31%), Gaps = 40/251 (15%)
Query: 204 RDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRI 263
+DIL F + + FD + + + + ++ + ++ + L
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK--------DAVSGTLRLFWT 70
Query: 264 EEPQRQKSLLSVGKADILRA-LRFL----------PATKHDLLSFTCDCPLYT--PGLIQ 310
+Q+ ++ ++LR +FL P+ + D LY +
Sbjct: 71 LL-SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAK 128
Query: 311 FSVC--GLYEEITTGTKNKSKLIRAFNRAFLLVPRSG-GGFAITNDQLFITSATPEQAEK 367
++V Y ++ + L+ +L+ G G T + + + +
Sbjct: 129 YNVSRLQPYLKL------RQALLELRPAKNVLI--DGVLGSGKT--WVALDVCLSYKVQC 178
Query: 368 AFSSQVT-ASESTCSTPVSNEILIK-QNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVT 425
++ + C++P +L Q ++ + + S + +
Sbjct: 179 KMDFKIFWLNLKNCNSP--ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 426 IFNQLKAKNAL 436
+ +N L
Sbjct: 237 LLKSKPYENCL 247
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet
heterodimer interface, nucleopo binding pocket, water
mediated interface; 1.84A {Caenorhabditis elegans}
Length = 154
Score = 46.9 bits (111), Expect = 1e-06
Identities = 25/170 (14%), Positives = 46/170 (27%), Gaps = 45/170 (26%)
Query: 189 ELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNH 248
+ Q E + + F++ Y+ + D R + Y + +
Sbjct: 19 SMKTTQEINKEDEELCNESKKFMDVYYDVMDR-KREKIGFLYTQVSN------------- 64
Query: 249 LLNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTC-----DCPL 303
G I ++ LP+T+HD+ S
Sbjct: 65 ------------AVWNGNPIN------GYDSICEFMKALPSTQHDIQSLDAQRLPEGVTG 106
Query: 304 YTPGLIQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITND 353
G + +V G RAF + LL G + + +D
Sbjct: 107 DMSGGMLLNVAGAV-------TVDGDSKRAFTQTLLLGV-EDGKYKVKSD 148
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 47.7 bits (114), Expect = 3e-06
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L L L+L +N++ ++ LA + +++ LYL+ N+I D +R L L NL+ L
Sbjct: 153 SRLTKLDTLSLEDNQI---SDIVPLAG-LTKLQNLYLSKNHISD---LRALAGLKNLDVL 205
Query: 141 RLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDL 184
L + + + D + P I+ D
Sbjct: 206 ELFSQECL----NKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 245
Score = 44.7 bits (106), Expect = 3e-05
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATI 128
N ++ + + +LP L +L L NK+ L L ++ L L N I D I
Sbjct: 121 HNGISDINGL--VHLPQLESLYLGNNKITDITVLSRL----TKLDTLSLEDNQISD---I 171
Query: 129 RTLESLSNLEELRLEKN 145
L L+ L+ L L KN
Sbjct: 172 VPLAGLTKLQNLYLSKN 188
Score = 42.3 bits (100), Expect = 1e-04
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
++L L +L+L N + L+ L P+++ LYL +N I D I L L+ L+ L
Sbjct: 109 KDLKKLKSLSLEHNGISDINGLVHL----PQLESLYLGNNKITD---ITVLSRLTKLDTL 161
Query: 141 RLEKN 145
LE N
Sbjct: 162 SLEDN 166
Score = 41.2 bits (97), Expect = 4e-04
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+ LP++ L L+ NKL + L +L + L+L N +KD + +L+ L L+ L
Sbjct: 65 QYLPNVTKLFLNGNKLTDIKPLANLKNL----GWLFLDENKVKD---LSSLKDLKKLKSL 117
Query: 141 RLEKN 145
LE N
Sbjct: 118 SLEHN 122
Score = 38.9 bits (91), Expect = 0.002
Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+ + NL + + + L + + +++IK ++ ++ L N+ +L
Sbjct: 21 DAFAETIKDNLKKKSVTDAVTQNELNSI----DQIIANNSDIKS---VQGIQYLPNVTKL 73
Query: 141 RLEKN 145
L N
Sbjct: 74 FLNGN 78
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 48.2 bits (114), Expect = 4e-06
Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 12/112 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L L L+L +N++ L L +++ LYL+ N+I D +R L L NL+ L
Sbjct: 150 SRLTKLDTLSLEDNQISDIVPLAGL----TKLQNLYLSKNHISD---LRALAGLKNLDVL 202
Query: 141 RLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNIELPK 192
L + + P +K D L P + + + E P
Sbjct: 203 ELFSQECLNKPINHQS-----NLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 249
Score = 46.6 bits (110), Expect = 1e-05
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATI 128
N ++ + + +LP L +L L NK+ L L ++ L L N I D I
Sbjct: 118 HNGISDINGL--VHLPQLESLYLGNNKITDITVLSRL----TKLDTLSLEDNQISD---I 168
Query: 129 RTLESLSNLEELRLEKN 145
L L+ L+ L L KN
Sbjct: 169 VPLAGLTKLQNLYLSKN 185
Score = 45.1 bits (106), Expect = 3e-05
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
++L L +L+L N + L+ L P+++ LYL +N I D I L L+ L+ L
Sbjct: 106 KDLKKLKSLSLEHNGISDINGLVHL----PQLESLYLGNNKITD---ITVLSRLTKLDTL 158
Query: 141 RLEKN 145
LE N
Sbjct: 159 SLEDN 163
Score = 43.2 bits (101), Expect = 1e-04
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+ LP++ L L+ NKL + L +L + L+L N IKD + +L+ L L+ L
Sbjct: 62 QYLPNVTKLFLNGNKLTDIKPLTNLKNL----GWLFLDENKIKD---LSSLKDLKKLKSL 114
Query: 141 RLEKN 145
LE N
Sbjct: 115 SLEHN 119
Score = 40.1 bits (93), Expect = 0.001
Identities = 9/65 (13%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+ + NL + + ++ + + + + +++IK ++ ++ L N+ +L
Sbjct: 18 DAFAETIKDNLKKKSV---TDAVTQNE-LNSIDQIIANNSDIKS---VQGIQYLPNVTKL 70
Query: 141 RLEKN 145
L N
Sbjct: 71 FLNGN 75
Score = 28.9 bits (64), Expect = 4.0
Identities = 6/60 (10%), Positives = 19/60 (31%), Gaps = 7/60 (11%)
Query: 86 LFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145
+ + + A+ I L ++ D T L++++++ +
Sbjct: 1 MGETITVSTPIKQIFPDDAFAETI----KDNLKKKSVTD---AVTQNELNSIDQIIANNS 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 48.0 bits (114), Expect = 4e-06
Identities = 50/224 (22%), Positives = 78/224 (34%), Gaps = 25/224 (11%)
Query: 82 NLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+P L L+LS N L + + R++ LYL HN+I L L + L+ L
Sbjct: 299 PIPTLKVLDLSHNHLLHVERNQPQF----DRLENLYLDHNSIVTLK----LSTHHTLKNL 350
Query: 141 RLEKNPWTECFNEQDAYTSEVRKIFPKL--LKLDDIQLPPPIVFDLEDNI---ELPKPQG 195
L N W + +R +F + +DD I + LE + E KP
Sbjct: 351 TLSHNDWDC---------NSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYL 401
Query: 196 SFLCHPEARDILRAFLEQYFALFDTESRAGLID-AYHENAQYSLVVTQGLGNNHLLNNML 254
L A + +++ + H Q V QG N L
Sbjct: 402 DRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNEL 461
Query: 255 ANSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFT 298
L E+ Q+++ L + A+I LR K L +
Sbjct: 462 RAEVQQLTNEQIQQEQLLQGL-HAEIDTNLRRYRLPKDGLARSS 504
Score = 40.7 bits (95), Expect = 0.001
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 78 IINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNL 137
+ +L L L N L L++ P + + L++N ++ + + L
Sbjct: 226 VRGPVNVELTILKLQHNNLTDTAWLLNY----PGLVEVDLSYNELEKIMY-HPFVKMQRL 280
Query: 138 EELRLEKN 145
E L + N
Sbjct: 281 ERLYISNN 288
Score = 39.9 bits (93), Expect = 0.002
Identities = 14/80 (17%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDL 125
+++ M + + ++ + LNL++ ++ + ++ LY+ N I+ L
Sbjct: 59 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA----HTIQKLYMGFNAIRYL 114
Query: 126 ATIRTLESLSNLEELRLEKN 145
+++ L L LE+N
Sbjct: 115 PP-HVFQNVPLLTVLVLERN 133
Score = 38.0 bits (88), Expect = 0.005
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 81 ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
+N+P L L L N L + P++ L +++NN++ + T ++ ++L+
Sbjct: 120 QNVPLLTVLVLERNDLSSLPRGIFHNT----PKLTTLSMSNNNLERIED-DTFQATTSLQ 174
Query: 139 ELRLEKN 145
L+L N
Sbjct: 175 NLQLSSN 181
Score = 37.2 bits (86), Expect = 0.010
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 81 ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
N P L ++LS N+L + + R++ LY+++N + L + + L+
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKM----QRLERLYISNNRLVALN--LYGQPIPTLK 304
Query: 139 ELRLEKN 145
L L N
Sbjct: 305 VLDLSHN 311
Score = 35.7 bits (82), Expect = 0.033
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 17/78 (21%)
Query: 82 NLPDLFALNLSENKLYYPESLISL--------------AKVIPRVKILYLAHNNIKDLAT 127
+P LF N+S N L I++ V + IL L HNN+ D A
Sbjct: 190 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA- 248
Query: 128 IRTLESLSNLEELRLEKN 145
L + L E+ L N
Sbjct: 249 --WLLNYPGLVEVDLSYN 264
Score = 33.4 bits (76), Expect = 0.17
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+ L L LS N+L + + L+ +IP + +++N + TL +EEL
Sbjct: 168 QATTSLQNLQLSSNRL----THVDLS-LIPSLFHANVSYNLLS------TLAIPIAVEEL 216
Query: 141 RLEKNP 146
N
Sbjct: 217 DASHNS 222
Score = 32.6 bits (74), Expect = 0.31
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 89 LNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145
+++ +Y+ I+L KI+ ++ ++ L L+S +E L L
Sbjct: 34 IDMQTQDVYFGFEDITL----NNQKIVTFKNSTMRKLPA-ALLDSFRQVELLNLNDL 85
>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific
processing proteases(UB NTF2, protein-protein
recognition; 1.69A {Saccharomyces cerevisiae} SCOP:
d.17.4.2 PDB: 1zx2_A
Length = 154
Score = 45.1 bits (106), Expect = 7e-06
Identities = 29/158 (18%), Positives = 47/158 (29%), Gaps = 29/158 (18%)
Query: 201 PEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNL 260
+DI AFL+ Y+ T + L Y A+ + Q N + +
Sbjct: 9 VTVQDICFAFLQNYYERMRT-DPSKLAYFYASTAELTHTNYQSKSTNEKDDVLPTVK--- 64
Query: 261 LRIEEPQRQKSLLSVGKADILRALRFLPA----TKHDLLSFTCDCPLYTPGLIQFSVCGL 316
G+ +I + A K L + + I G
Sbjct: 65 -------------VTGRENINKFFSRNDAKVRSLKLKLDTIDFQYTGHLHKSILIMATGE 111
Query: 317 YEEITTGTKNKSKLIRAFNRAFLLVP-RSGGGFAITND 353
+ F + F+L+P +G F ITND
Sbjct: 112 M-------FWTGTPVYKFCQTFILLPSSNGSTFDITND 142
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 46.5 bits (111), Expect = 8e-06
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 74 SVCNIINENLPDLFALNLSENKL-YYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLE 132
C+ + L L+LS N + + + L +++ L H+N+K ++
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL----EQLEHLDFQHSNLKQMSEFSVFL 123
Query: 133 SLSNLEELRLEKN 145
SL NL L +
Sbjct: 124 SLRNLIYLDISHT 136
Score = 44.6 bits (106), Expect = 3e-05
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+ L L L+LS N L + +K L L+ N + ++ L LE L
Sbjct: 49 DKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS--SNFLGLEQLEHL 106
Query: 141 RLEKNP 146
+ +
Sbjct: 107 DFQHSN 112
Score = 40.8 bits (96), Expect = 5e-04
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
+L +L L++S L +++L +A N+ ++ L NL
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGL----SSLEVLKMAGNSFQENFLPDIFTELRNLTF 179
Query: 140 LRLEKN 145
L L +
Sbjct: 180 LDLSQC 185
Score = 40.0 bits (94), Expect = 0.001
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESL-SNLE 138
+L L LN+S N + L +++L + N+I + L+ S+L
Sbjct: 197 SLSSLQVLNMSHNNFFSLDTFPYKCL----NSLQVLDYSLNHIMTSKK-QELQHFPSSLA 251
Query: 139 ELRLEKNPW 147
L L +N +
Sbjct: 252 FLNLTQNDF 260
Score = 38.1 bits (89), Expect = 0.004
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLA--KVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
L L L+ + L + + + + + L ++H + + LS+LE
Sbjct: 98 LGLEQLEHLDFQHSNL---KQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLE 153
Query: 139 ELRLEKNPWTECFNE 153
L++ N + E F
Sbjct: 154 VLKMAGNSFQENFLP 168
Score = 36.9 bits (86), Expect = 0.009
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 81 ENLPDLFALNLSENKL---YYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNL 137
L L L ++ N + P+ L + L L+ ++ L+ SLS+L
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTEL----RNLTFLDLSQCQLEQLSP-TAFNSLSSL 201
Query: 138 EELRLEKNP 146
+ L + N
Sbjct: 202 QVLNMSHNN 210
Score = 31.5 bits (72), Expect = 0.48
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 110 PRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145
L L N ++ L + L+ L +L L N
Sbjct: 28 SSATRLELESNKLQSLPH-GVFDKLTQLTKLSLSSN 62
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 46.6 bits (111), Expect = 1e-05
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDL 125
N ++++ + L L + L +L P + L +++L ++ N + L
Sbjct: 256 SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL----NYLRVLNVSGNQLTTL 311
Query: 126 ATIRTLESLSNLEELRLEKNPW 147
S+ NLE L L+ NP
Sbjct: 312 EE-SVFHSVGNLETLILDSNPL 332
Score = 43.2 bits (102), Expect = 1e-04
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDL 125
N++++V NL +L L L N+L L + L ++ N I L
Sbjct: 64 NENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL----SNLTKLDISENKIVIL 119
Query: 126 ATIRTLESLSNLEELRLEKNP 146
+ L NL+ L + N
Sbjct: 120 LD-YMFQDLYNLKSLEVGDND 139
Score = 42.8 bits (101), Expect = 2e-04
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDL 125
N + ++ + P L L L+EN + P + +L ++ L L N +K +
Sbjct: 40 GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL----FNLRTLGLRSNRLKLI 95
Query: 126 ATIRTLESLSNLEELRLEKN 145
LSNL +L + +N
Sbjct: 96 PL-GVFTGLSNLTKLDISEN 114
Score = 41.6 bits (98), Expect = 4e-04
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 14/103 (13%)
Query: 58 VEANMFVPLDR-------SNVMTSVCNIINENLPDLFALNLSENKLYY--PESLISLAKV 108
+ MF L N + + + L L L L + L E+L L
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL--- 175
Query: 109 IPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECF 151
+ +L L H NI + + + L L+ L + P+ +
Sbjct: 176 -HGLIVLRLRHLNINAIRD-YSFKRLYRLKVLEISHWPYLDTM 216
Score = 38.9 bits (91), Expect = 0.003
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+ L L L +S +++ + L + H N+ + + L L L
Sbjct: 197 KRLYRLKVLEISHWPY--LDTMTPNCLYGLNLTSLSITHCNLTAVPY-LAVRHLVYLRFL 253
Query: 141 RLEKNPWTE 149
L NP +
Sbjct: 254 NLSYNPIST 262
Score = 32.8 bits (75), Expect = 0.22
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 101 SLISLAKVIPR-VKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145
+++ + IP ++L L N IK L S +LEEL L +N
Sbjct: 22 RFVAVPEGIPTETRLLDLGKNRIKTL-NQDEFASFPHLEELELNEN 66
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 46.1 bits (108), Expect = 1e-05
Identities = 13/102 (12%), Positives = 43/102 (42%), Gaps = 10/102 (9%)
Query: 80 NENLPDLFALNLSENKLYYPE-SLISLAKVIPRVKILYLAHNNIKD---LATIRTLESLS 135
+ P+L L + + + + + ++P+++ + ++ + D + ++ +
Sbjct: 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIK 307
Query: 136 NLEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLP 177
+L+ + ++ N + D E++K P + + D Q
Sbjct: 308 HLKFINMKYNYLS------DEMKKELQKSLPMKIDVSDSQEY 343
Score = 33.0 bits (74), Expect = 0.18
Identities = 15/116 (12%), Positives = 38/116 (32%), Gaps = 8/116 (6%)
Query: 39 YNGDNKALDLSKFYADPDFVEANMFVPLDRSNVMTSVCNII--NENLPDLFALNLSENKL 96
Y D ++ F + + V + ++ LP L +++S L
Sbjct: 233 YGFDGDMNVFRPLFSKDRFPNLKWLG-IVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291
Query: 97 YYP--ESLISLAKVIPRVKILYLAHNNIKDLATIR---TLESLSNLEELRLEKNPW 147
L+ I +K + + +N + D +L ++ + + + +
Sbjct: 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEYDDDY 347
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 45.4 bits (108), Expect = 1e-05
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 14/114 (12%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+L +L L++ NKL L L ++++L L N I + L L + +
Sbjct: 125 IHLKNLEILSIRNNKLKSIVMLGFL----SKLEVLDLHGNEITN---TGGLTRLKKVNWI 177
Query: 141 RLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNIELPKPQ 194
L + I + D + P + + +
Sbjct: 178 DLTGQKCV----NEPVKYQPELYITNTVKDPDGRWISP---YYISNGGSYVDGC 224
Score = 42.3 bits (100), Expect = 2e-04
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 77 NIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSN 136
N+ L L L N+L +SLI L ++IL + +N +K I L LS
Sbjct: 99 NLNGIPSACLSRLFLDNNELRDTDSLIHL----KNLEILSIRNNKLKS---IVMLGFLSK 151
Query: 137 LEELRLEKNP 146
LE L L N
Sbjct: 152 LEVLDLHGNE 161
Score = 41.5 bits (98), Expect = 3e-04
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+ L + N + + + +K L+L+HN I D + L+ L+ LEEL
Sbjct: 38 KELSGVQNFNGDNSNIQSLAGMQFF----TNLKELHLSHNQISD---LSPLKDLTKLEEL 90
Query: 141 RLEKN 145
+ +N
Sbjct: 91 SVNRN 95
Score = 41.2 bits (97), Expect = 4e-04
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L + NL + + S L V+ ++NI+ + ++ +NL+EL
Sbjct: 16 PGLANAVKQNLGKQSVTDLVSQKEL----SGVQNFNGDNSNIQS---LAGMQFFTNLKEL 68
Query: 141 RLEKN 145
L N
Sbjct: 69 HLSHN 73
Score = 37.3 bits (87), Expect = 0.005
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 24/95 (25%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDL--- 125
++ + S+ + + +L L+LS N++ L L +++ L + N +K+L
Sbjct: 50 NSNIQSLAGM--QFFTNLKELHLSHNQISDLSPLKDL----TKLEELSVNRNRLKNLNGI 103
Query: 126 ---------------ATIRTLESLSNLEELRLEKN 145
+L L NLE L + N
Sbjct: 104 PSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNN 138
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 46.2 bits (110), Expect = 2e-05
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 74 SVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLES 133
C+ + L L+LS N + ++ S + +++ L H+N+K ++ S
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGV---ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 134 LSNLEELRLEKNPWTECFNE 153
L NL L + FN
Sbjct: 420 LRNLIYLDISHTHTRVAFNG 439
Score = 45.5 bits (108), Expect = 3e-05
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
L +L L+LS+ +L P + SL +++L +A N +K + + L++L++
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSL----SSLQVLNMASNQLKSVPD-GIFDRLTSLQK 522
Query: 140 LRLEKNPW 147
+ L NPW
Sbjct: 523 IWLHTNPW 530
Score = 45.1 bits (107), Expect = 3e-05
Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 81 ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
L L L E L + L +K L +AHN I+ +L+NLE
Sbjct: 97 SGLSSLQKLVAVETNLASLENFPIGHL----KTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 139 ELRLEKNPWTE 149
L L N
Sbjct: 153 HLDLSSNKIQS 163
Score = 40.5 bits (95), Expect = 8e-04
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 74 SVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIR-TLE 132
L L L + NK S + L P ++ L L+ N + +
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL----PSLEFLDLSRNGLSFKGCCSQSDF 370
Query: 133 SLSNLEELRLEKN 145
++L+ L L N
Sbjct: 371 GTTSLKYLDLSFN 383
Score = 40.5 bits (95), Expect = 9e-04
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 82 NLPDLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
+L +L L++S + L +++L +A N+ ++ L NL
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGL----SSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 140 LRLEKN 145
L L +
Sbjct: 475 LDLSQC 480
Score = 40.5 bits (95), Expect = 0.001
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
+ P+L L+LS ++ + SL + L L N I+ LA LS+L++
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSL----SHLSTLILTGNPIQSLAL-GAFSGLSSLQK 104
Query: 140 LRLEKN 145
L +
Sbjct: 105 LVAVET 110
Score = 39.3 bits (92), Expect = 0.002
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 81 ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
++L L L L+ N + + L ++ L N+ L + L L+
Sbjct: 73 QSLSHLSTLILTGNPIQSLALGAFSGL----SSLQKLVAVETNLASLEN-FPIGHLKTLK 127
Query: 139 ELRLEKN 145
EL + N
Sbjct: 128 ELNVAHN 134
Score = 37.4 bits (87), Expect = 0.008
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 8/80 (10%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKLYY---PESLISLAKVIPRVKILYLAHNNIKDL 125
N I L L L ++ N P+ L + L L+ ++ L
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL----RNLTFLDLSQCQLEQL 485
Query: 126 ATIRTLESLSNLEELRLEKN 145
+ SLS+L+ L + N
Sbjct: 486 SP-TAFNSLSSLQVLNMASN 504
Score = 34.3 bits (79), Expect = 0.086
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 79 INENLP-DLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLS 135
I +NLP L+LS N L S S P +++L L+ I+ + +SLS
Sbjct: 22 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSF----PELQVLDLSRCEIQTIED-GAYQSLS 76
Query: 136 NLEELRLEKNP 146
+L L L NP
Sbjct: 77 HLSTLILTGNP 87
Score = 33.5 bits (77), Expect = 0.16
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKL---YYPESLISLAKVIPRVKILYLAHNNIKDL 125
+ S+ N +L L LN++ N + PE +L ++ L L+ N I+ +
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL----TNLEHLDLSSNKIQSI 164
Query: 126 A--TIRTLESLSNLE-ELRLEKNP 146
+R L + L L L NP
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNP 188
Score = 32.8 bits (75), Expect = 0.27
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 69 SNVMTSVCNIINENLPDL----FALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKD 124
SN + S+ L + +L+LS N + + A R+ L L +N
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM---NFIQPGAFKEIRLHKLTLRNNFDSL 214
Query: 125 LATIRTLESLSNLEELRLEKN 145
++ L+ LE RL
Sbjct: 215 NVMKTCIQGLAGLEVHRLVLG 235
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 45.0 bits (107), Expect = 2e-05
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
L L L L +N++ + P + L R+ LYL NN+ L T L L L+
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDL----GRLMTLYLFANNLSALPT-EALAPLRALQY 229
Query: 140 LRLEKNPW 147
LRL NPW
Sbjct: 230 LRLNDNPW 237
Score = 41.1 bits (97), Expect = 4e-04
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 81 ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
L L L L +N L ++ L + L+L N I + R L +L+
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDL----GNLTHLFLHGNRISSVPE-RAFRGLHSLD 180
Query: 139 ELRLEKN 145
L L +N
Sbjct: 181 RLLLHQN 187
Score = 39.6 bits (93), Expect = 0.001
Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 7/67 (10%)
Query: 81 ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
L L L+L L P L ++ LYL N ++ L T L NL
Sbjct: 102 HGLGRLHTLHLDRCGLQELGPGLFRGL----AALQYLYLQDNALQALPD-DTFRDLGNLT 156
Query: 139 ELRLEKN 145
L L N
Sbjct: 157 HLFLHGN 163
Score = 36.9 bits (86), Expect = 0.009
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 81 ENLP-DLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNL 137
+P + L N++ S + + IL+L N + + L+ L
Sbjct: 28 VGIPAASQRIFLHGNRISHVPAASFRAC----RNLTILWLHSNVLARIDA-AAFTGLALL 82
Query: 138 EELRLEKNP 146
E+L L N
Sbjct: 83 EQLDLSDNA 91
Score = 36.5 bits (85), Expect = 0.012
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNN-IKDLATIRTLESLSNLE 138
+L L L N L + L ++ L L+ N ++ + T L L
Sbjct: 54 ACRNLTILWLHSNVLARIDAAAFTGL----ALLEQLDLSDNAQLRSVDP-ATFHGLGRLH 108
Query: 139 ELRLEKN 145
L L++
Sbjct: 109 TLHLDRC 115
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 45.0 bits (107), Expect = 2e-05
Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 16/123 (13%)
Query: 82 NLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L L+LS NKL + S V + L +N + + + L NLE
Sbjct: 189 VFAKLKTLDLSSNKLAFMGPEFQSA----AGVTWISLRNNKLVLIE--KALRFSQNLEHF 242
Query: 141 RLEKNPWTECFNEQDAYTSEVR------KIFPKLLKLDDIQLPPPIVFDLEDNI--ELPK 192
L N + C +D ++ R + KL ++ + P + +LP
Sbjct: 243 DLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301
Query: 193 PQG 195
P
Sbjct: 302 PFA 304
Score = 40.7 bits (96), Expect = 6e-04
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L LNLS N LY L SL ++ L L +N ++ L ++E L
Sbjct: 55 APFTKLELLNLSSNVLYETLDLESL----STLRTLDLNNNYVQ------ELLVGPSIETL 104
Query: 141 RLEKN 145
N
Sbjct: 105 HAANN 109
Score = 40.4 bits (95), Expect = 8e-04
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 79 INENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
I +N ++++ L ++L SL + VK L L+ N + ++ L + LE
Sbjct: 5 IKQNGNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISA-ADLAPFTKLE 61
Query: 139 ELRLEKN 145
L L N
Sbjct: 62 LLNLSSN 68
Score = 40.4 bits (95), Expect = 8e-04
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDL 125
+ + + ++ ++ L+LS N L L ++++L L+ N + +
Sbjct: 18 TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF----TKLELLNLSSNVLYET 73
Query: 126 ATIRTLESLSNLEELRLEKN 145
+ ESLS L L L N
Sbjct: 74 LDL---ESLSTLRTLDLNNN 90
Score = 39.2 bits (92), Expect = 0.002
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
E+L L L+L+ N + + L+ P ++ L+ A+NNI + + + +
Sbjct: 77 ESLSTLRTLDLNNNYV---QELLVG----PSIETLHAANNNISRV----SCSRGQGKKNI 125
Query: 141 RLEKN 145
L N
Sbjct: 126 YLANN 130
Score = 38.4 bits (90), Expect = 0.003
Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLA-KVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
+ L+ NK+ L L RV+ L L N I + S LE
Sbjct: 117 SRGQGKKNIYLANNKI---TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173
Query: 140 LRLEKN 145
L L+ N
Sbjct: 174 LNLQYN 179
Score = 35.4 bits (82), Expect = 0.031
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVI---PRVKILYLAHNNIKDLATIRTLESLSNLE 138
+ L+L N++ ++ A++ ++ L L +N I ++ + L+
Sbjct: 142 CRSRVQYLDLKLNEI----DTVNFAELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLK 194
Query: 139 ELRLEKN 145
L L N
Sbjct: 195 TLDLSSN 201
Score = 32.7 bits (75), Expect = 0.20
Identities = 9/76 (11%), Positives = 24/76 (31%), Gaps = 5/76 (6%)
Query: 81 ENLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
++ + ++L NKL ++L ++ L N ++
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKALRFS----QNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266
Query: 140 LRLEKNPWTECFNEQD 155
+ + NE++
Sbjct: 267 VAKQTVKKLTGQNEEE 282
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 45.6 bits (108), Expect = 2e-05
Identities = 14/65 (21%), Positives = 25/65 (38%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+ L LF L L L + + + L L+ N I+ L + L++L+ +
Sbjct: 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153
Query: 141 RLEKN 145
N
Sbjct: 154 DFSSN 158
Score = 41.3 bits (97), Expect = 5e-04
Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVI---PRVKILYLAHNNIKDLATIRTLESLSNLE 138
P L L L EN L V +++LYL HN + L L+ L
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL-PPGVFSHLTALR 507
Query: 139 ELRLEKNPWTE 149
L L N T
Sbjct: 508 GLSLNSNRLTV 518
Score = 40.9 bits (96), Expect = 7e-04
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKLYYPE-------------SLISLAKVIPRVKIL 115
N + + + + L L L+L +N L L++L K+ ++
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLI 406
Query: 116 YLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQ 154
+L+ N +++L + L + +L+ L L +N ++ C +Q
Sbjct: 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445
Score = 40.6 bits (95), Expect = 9e-04
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 8/68 (11%)
Query: 81 ENLPDLFALNLSENKLYY---PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNL 137
L L L L E+ +L P ++IL L + I L + L +L
Sbjct: 45 PFLEQLQLLELGSQYTPLTIDKEAFRNL----PNLRILDLGSSKIYFLHP-DAFQGLFHL 99
Query: 138 EELRLEKN 145
ELRL
Sbjct: 100 FELRLYFC 107
Score = 40.2 bits (94), Expect = 0.001
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 81 ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
+ L L LS N + S L ++++L L +L NL
Sbjct: 21 QVLNTTERLLLSFNYIRTVTASSFPFL----EQLQLLELGSQYTPLTIDKEAFRNLPNLR 76
Query: 139 ELRLEKNP 146
L L +
Sbjct: 77 ILDLGSSK 84
Score = 38.2 bits (89), Expect = 0.005
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 73 TSVCNIINENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRT 130
T +C + E L L L L+ N L P L ++ L L N + L+
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL----TALRGLSLNSNRLTVLS---H 521
Query: 131 LESLSNLEELRLEKNPWTE 149
+ +NLE L + +N
Sbjct: 522 NDLPANLEILDISRNQLLA 540
Score = 36.7 bits (85), Expect = 0.015
Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 19/101 (18%)
Query: 58 VEANMFVPLDR-------SNVMTSVCNIINENLPDLFALNLSENKLYY--PESLISLAKV 108
+ F LD N++ + + LP + ++L +N + ++ L
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL--- 361
Query: 109 IPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149
+++ L L N + T+ + ++ ++ L N
Sbjct: 362 -EKLQTLDLRDNALT------TIHFIPSIPDIFLSGNKLVT 395
Score = 36.3 bits (84), Expect = 0.018
Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATI 128
N + S+ + +L L L+L+ N+L +++S + ++IL ++ N +
Sbjct: 489 HNYLNSLPPGVFSHLTALRGLSLNSNRL----TVLSHNDLPANLEILDISRNQLLAP--- 541
Query: 129 RTLESLSNLEELRLEKNPW 147
+ +L L + N +
Sbjct: 542 -NPDVFVSLSVLDITHNKF 559
Score = 35.2 bits (81), Expect = 0.054
Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
L L +++ S N+++ L L + LA N++ ++ + ++
Sbjct: 146 KLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203
Query: 140 LRLEKN 145
+ LE
Sbjct: 204 MVLEIL 209
Score = 35.2 bits (81), Expect = 0.054
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 22/90 (24%)
Query: 58 VEANMFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYY--PESLISLAKVIPRVKIL 115
+ N F L RS+V L+LS ++ +L +K+L
Sbjct: 255 PDQNTFAGLARSSVRH---------------LDLSHGFVFSLNSRVFETL----KDLKVL 295
Query: 116 YLAHNNIKDLATIRTLESLSNLEELRLEKN 145
LA+N I + L NL+ L L N
Sbjct: 296 NLAYNKINKI-ADEAFYGLDNLQVLNLSYN 324
Score = 34.4 bits (79), Expect = 0.083
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 101 SLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145
+L + +V+ + L L+ N I+ + T + L L+ L L
Sbjct: 15 NLTQVPQVLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQ 58
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 45.1 bits (107), Expect = 3e-05
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 79 INENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
+ LP L L +S NKL + A + P + ++ ++ N +K + + L++L+
Sbjct: 446 FSLFLPRLQELYISRNKL----KTLPDASLFPVLLVMKISRNQLKSVPD-GIFDRLTSLQ 500
Query: 139 ELRLEKNPW 147
++ L NPW
Sbjct: 501 KIWLHTNPW 509
Score = 40.9 bits (96), Expect = 8e-04
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 7/88 (7%)
Query: 66 LDRSNVMTSVCNIINENLPDLFALNLSENKL--YYPESLISLAKVIPRVKILYLAHNNIK 123
+ + + I L L L + L Y +SL S+ + L L +
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI----RDIHHLTLHLSESA 185
Query: 124 DLATIRTLESLSNLEELRLEKNPWTECF 151
L I + LS++ L L
Sbjct: 186 FLLEI-FADILSSVRYLELRDTNLARFQ 212
Score = 39.3 bits (92), Expect = 0.002
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 81 ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
+L L L+LS+N L L +K L L N + L +L+NL+
Sbjct: 71 YSLGSLEHLDLSDNHLSSLSSSWFGPL----SSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126
Query: 139 ELRLEKNPWTECFNEQD 155
LR+ D
Sbjct: 127 TLRIGNVETFSEIRRID 143
Score = 38.9 bits (91), Expect = 0.003
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 81 ENLPDLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDL-ATIRTLESLSNL 137
++L L L+LSEN + Y ++ P ++ L L+ N+++ + T L +L NL
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAW-PSLQTLVLSQNHLRSMQKTGEILLTLKNL 389
Query: 138 EELRLEKN 145
L + +N
Sbjct: 390 TSLDISRN 397
Score = 38.6 bits (90), Expect = 0.004
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 11/107 (10%)
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDL 125
+ V + + L++ + L+Y L +VK + + ++ + +
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL----EKVKRITVENSKVFLV 325
Query: 126 ATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLD 172
+ L +LE L L +N E+ S + +P L L
Sbjct: 326 -PCSFSQHLKSLEFLDLSEN----LMVEEYLKNSACKGAWPSLQTLV 367
Score = 38.2 bits (89), Expect = 0.005
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 15/83 (18%)
Query: 73 TSVCNIINENL--------PDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNI 122
+ VC+ + + + +L+LS NK+ Y L + +++L L + I
Sbjct: 7 SGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRAC----ANLQVLILKSSRI 62
Query: 123 KDLATIRTLESLSNLEELRLEKN 145
+ SL +LE L L N
Sbjct: 63 NTIEG-DAFYSLGSLEHLDLSDN 84
Score = 36.2 bits (84), Expect = 0.023
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELR 141
L L LNL N + ++ L + + L++L EL
Sbjct: 96 PLSSLKYLNLMGNPYQTLGVTSLFPN-LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154
Query: 142 LEKN 145
++
Sbjct: 155 IKAL 158
Score = 35.9 bits (83), Expect = 0.026
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 82 NLPDLFALNLSENKL-YYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L +L +L++S N P+S +++ L L+ I+ + LE L
Sbjct: 385 TLKNLTSLDISRNTFHPMPDSCQWP----EKMRFLNLSSTGIRVV----KTCIPQTLEVL 436
Query: 141 RLEKN 145
+ N
Sbjct: 437 DVSNN 441
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 44.7 bits (106), Expect = 3e-05
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATI 128
N +T++ + L +L L++ ++ L LA + ++ L N I D I
Sbjct: 138 LNQITNISPL--AGLTNLQYLSIGNAQV---SDLTPLAN-LSKLTTLKADDNKISD---I 188
Query: 129 RTLESLSNLEELRLEKNP 146
L SL NL E+ L+ N
Sbjct: 189 SPLASLPNLIEVHLKNNQ 206
Score = 41.2 bits (97), Expect = 4e-04
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L + L+L+ ++ L L +++LYL N I + I L L+NL+ L
Sbjct: 104 AGLQSIKTLDLTSTQITDVTPLAGL----SNLQVLYLDLNQITN---ISPLAGLTNLQYL 156
Query: 141 RLEKN 145
+
Sbjct: 157 SIGNA 161
Score = 40.4 bits (95), Expect = 8e-04
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
NL L L +NK+ L SL P + ++L +N I D + L + SNL +
Sbjct: 170 ANLSKLTTLKADDNKISDISPLASL----PNLIEVHLKNNQISD---VSPLANTSNLFIV 222
Query: 141 RLEKNPWTE 149
L T
Sbjct: 223 TLTNQTITN 231
Score = 40.1 bits (94), Expect = 9e-04
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+ L +L L L +N++ L +L ++ L L+ N +K+ + + L +++ L
Sbjct: 60 QYLNNLIGLELKDNQITDLAPLKNL----TKITELELSGNPLKN---VSAIAGLQSIKTL 112
Query: 141 RLEKN 145
L
Sbjct: 113 DLTST 117
Score = 39.7 bits (93), Expect = 0.001
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L + + ++ + + L + L + I ++ L+NL L
Sbjct: 16 PALANAIKIAAGKSNVTDTVTQADL----DGITTLSAFGTGVTT---IEGVQYLNNLIGL 68
Query: 141 RLEKN 145
L+ N
Sbjct: 69 ELKDN 73
Score = 38.1 bits (89), Expect = 0.004
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+L + L+ + E + L + L L N I D + L++L+ + EL
Sbjct: 38 ADLDGITTLSAFGTGVTTIEGVQYL----NNLIGLELKDNQITD---LAPLKNLTKITEL 90
Query: 141 RLEKNPWTE 149
L NP
Sbjct: 91 ELSGNPLKN 99
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 45.0 bits (107), Expect = 4e-05
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+L L L NK+ SL +L + L HN I D + L +L+ + +L
Sbjct: 328 SSLTKLQRLFFYNNKVSDVSSLANLTNI----NWLSAGHNQISD---LTPLANLTRITQL 380
Query: 141 RLEKNPWT 148
L WT
Sbjct: 381 GLNDQAWT 388
Score = 41.9 bits (99), Expect = 3e-04
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+L +L L+L+ N++ L L K+ L L N I + I L L+ L L
Sbjct: 240 ASLTNLTDLDLANNQISNLAPLSGLTKL----TELKLGANQISN---ISPLAGLTALTNL 292
Query: 141 RLEKNP 146
L +N
Sbjct: 293 ELNENQ 298
Score = 40.7 bits (96), Expect = 7e-04
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L L L L+EN+L + +L + L L NNI D I + SL+ L+ L
Sbjct: 284 AGLTALTNLELNENQLEDISPISNL----KNLTYLTLYFNNISD---ISPVSSLTKLQRL 336
Query: 141 RLEKN 145
N
Sbjct: 337 FFYNN 341
Score = 40.7 bits (96), Expect = 8e-04
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L + L + + S L + V L IK + + E L+NL ++
Sbjct: 21 TALAEKMKTVLGKTNVTDTVSQTDLDQ----VTTLQADRLGIKSIDGV---EYLNNLTQI 73
Query: 141 RLEKN 145
N
Sbjct: 74 NFSNN 78
Score = 39.9 bits (94), Expect = 0.001
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+NL L + ++ N++ L +L + L L +N I D I L++L+NL L
Sbjct: 87 KNLTKLVDILMNNNQIADITPLANLTNL----TGLTLFNNQITD---IDPLKNLTNLNRL 139
Query: 141 RLEKN 145
L N
Sbjct: 140 ELSSN 144
Score = 39.9 bits (94), Expect = 0.001
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L +L +L + N++ + L + + L L N +KD I TL SL+NL +L
Sbjct: 196 AKLTNLESLIATNNQI---SDITPLGI-LTNLDELSLNGNQLKD---IGTLASLTNLTDL 248
Query: 141 RLEKN 145
L N
Sbjct: 249 DLANN 253
Score = 39.6 bits (93), Expect = 0.002
Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+L + L + + + L + + ++N + D I L++L+ L ++
Sbjct: 43 TDLDQVTTLQADRLGIKSIDGVEYL----NNLTQINFSNNQLTD---ITPLKNLTKLVDI 95
Query: 141 RLEKN 145
+ N
Sbjct: 96 LMNNN 100
Score = 39.6 bits (93), Expect = 0.002
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L L L L N++ L L + L L N ++D++ I +L NL L
Sbjct: 262 SGLTKLTELKLGANQISNISPLAGL----TALTNLELNENQLEDISPI---SNLKNLTYL 314
Query: 141 RLEKNPWTE 149
L N ++
Sbjct: 315 TLYFNNISD 323
Score = 37.3 bits (87), Expect = 0.008
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
NL +L L L N++ + L +L + L L+ N I D I L L++L++L
Sbjct: 109 ANLTNLTGLTLFNNQITDIDPLKNL----TNLNRLELSSNTISD---ISALSGLTSLQQL 161
Query: 141 RLEKN 145
Sbjct: 162 SFGNQ 166
Score = 36.1 bits (84), Expect = 0.021
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 20/82 (24%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVI-----------------PRVKILYLAHNNIK 123
+NL +L L LS N + +L L + ++ L ++ N +
Sbjct: 131 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS 190
Query: 124 DLATIRTLESLSNLEELRLEKN 145
D++ L L+NLE L N
Sbjct: 191 DIS---VLAKLTNLESLIATNN 209
Score = 27.6 bits (62), Expect = 8.3
Identities = 7/55 (12%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 91 LSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145
+ + + +LA+ + L N+ D + L + L+ ++
Sbjct: 9 TQDTPINQIFTDTALAEKM----KTVLGKTNVTD---TVSQTDLDQVTTLQADRL 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 44.2 bits (105), Expect = 5e-05
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 82 NLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDL-----ATIRTLESLS 135
N P L L+L+ NKL P L ++++YL +NNI + +
Sbjct: 238 NTPHLRELHLNNNKLVKVPGGLADH----KYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293
Query: 136 NLEELRLEKNPWT 148
+ + L NP
Sbjct: 294 SYSGVSLFSNPVQ 306
Score = 39.2 bits (92), Expect = 0.002
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 10/66 (15%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
NL +L L L NK+ P + L +++ LYL+ N +K+L + L+E
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPL----VKLERLYLSKNQLKELPE----KMPKTLQE 125
Query: 140 LRLEKN 145
LR+ +N
Sbjct: 126 LRVHEN 131
Score = 37.7 bits (88), Expect = 0.006
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 81 ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
+ + L + +++ + SL L+L N I + +L+ L+NL
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPPSL-------TELHLDGNKITKVDA-ASLKGLNNLA 219
Query: 139 ELRLEKNPWTE 149
+L L N +
Sbjct: 220 KLGLSFNSISA 230
Score = 37.3 bits (87), Expect = 0.008
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 81 ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
L L L LS+N+L + +L + L + N I + L+ +
Sbjct: 97 APLVKLERLYLSKNQLKELPEKMPKTL-------QELRVHENEITKVRK-SVFNGLNQMI 148
Query: 139 ELRLEKNP 146
+ L NP
Sbjct: 149 VVELGTNP 156
Score = 36.9 bits (86), Expect = 0.009
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 12/69 (17%)
Query: 81 ENLPDLFALNLSENKLYY----PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSN 136
L + + L N L + + ++ + +A NI + +
Sbjct: 142 NGLNQMIVVELGTNPLKSSGIENGAFQGM----KKLSYIRIADTNITTIPQ----GLPPS 193
Query: 137 LEELRLEKN 145
L EL L+ N
Sbjct: 194 LTELHLDGN 202
Score = 35.4 bits (82), Expect = 0.033
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 81 ENLP-DLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNL 137
++LP D L+L NK+ +L + L L +N I ++ L L
Sbjct: 48 KDLPPDTALLDLQNNKITEIKDGDFKNL----KNLHTLILINNKISKISP-GAFAPLVKL 102
Query: 138 EELRLEKN 145
E L L KN
Sbjct: 103 ERLYLSKN 110
Score = 33.8 bits (78), Expect = 0.085
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 7/66 (10%)
Query: 83 LPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLA-TIRTLESLSNLEE 139
L L + EN++ L ++ ++ L N +K + + L
Sbjct: 120 PKTLQELRVHENEITKVRKSVFNGL----NQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175
Query: 140 LRLEKN 145
+R+
Sbjct: 176 IRIADT 181
Score = 30.4 bits (69), Expect = 1.1
Identities = 7/70 (10%), Positives = 18/70 (25%), Gaps = 7/70 (10%)
Query: 82 NLPDLFALNLSENKLYY-PESLISLAKVI---PRVKILYLAHNNIKDLATI--RTLESLS 135
+ + + L N + + + L N ++ I T +
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ-YWEIQPSTFRCVY 319
Query: 136 NLEELRLEKN 145
++L
Sbjct: 320 VRAAVQLGNY 329
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 44.4 bits (105), Expect = 5e-05
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
+L L L LS N + + L + L L N + + LS L+E
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGL----ANLNTLELFDNRLTTIPN-GAFVYLSKLKE 140
Query: 140 LRLEKNP 146
L L NP
Sbjct: 141 LWLRNNP 147
Score = 43.2 bits (102), Expect = 1e-04
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
L L L + ++++ + +L + + LAHNN+ L L +LE
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNL----QSLVEINLAHNNLTLLPH-DLFTPLHHLER 283
Query: 140 LRLEKNPW 147
+ L NPW
Sbjct: 284 IHLHHNPW 291
Score = 40.1 bits (94), Expect = 0.001
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 81 ENLPDLFALNLSE-NKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNL 137
+P L L+L E +L Y + L ++ L LA N++ I L L L
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGL----SNLRYLNLAMCNLR---EIPNLTPLIKL 209
Query: 138 EELRLEKNPWT 148
+EL L N +
Sbjct: 210 DELDLSGNHLS 220
Score = 37.0 bits (86), Expect = 0.011
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 81 ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
L +L L L +N+L + + L ++K L+L +N I+ + + + +L
Sbjct: 109 NGLANLNTLELFDNRLTTIPNGAFVYL----SKLKELWLRNNPIESIPS-YAFNRIPSLR 163
Query: 139 ELRLEKNP 146
L L +
Sbjct: 164 RLDLGELK 171
Score = 33.2 bits (76), Expect = 0.19
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 110 PRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145
++L L N I+ + + + L +LE L+L +N
Sbjct: 64 TNTRLLNLHENQIQIIKV-NSFKHLRHLEILQLSRN 98
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 44.1 bits (105), Expect = 5e-05
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
NL L L + N++ ++ L K+ K+L + N I D I L +LS L L
Sbjct: 240 ANLSQLTWLEIGTNQISDINAVKDLTKL----KMLNVGSNQISD---ISVLNNLSQLNSL 292
Query: 141 RLEKN 145
L N
Sbjct: 293 FLNNN 297
Score = 43.3 bits (103), Expect = 9e-05
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLA 126
SN ++ + + NL L +L L+ N+L E + L + L+L+ N+I D
Sbjct: 274 SNQISDISVL--NNLSQLNSLFLNNNQLGNEDMEVIGGL----TNLTTLFLSQNHITD-- 325
Query: 127 TIRTLESLSNLEELRLEKNPWTE 149
IR L SLS ++ +
Sbjct: 326 -IRPLASLSKMDSADFANQVIKK 347
Score = 41.4 bits (98), Expect = 4e-04
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
E L +L LNL+ N++ L +L K+ LY+ N I D I L++L+NL EL
Sbjct: 63 EYLTNLEYLNLNGNQITDISPLSNLVKL----TNLYIGTNKITD---ISALQNLTNLREL 115
Query: 141 RLEKN 145
L ++
Sbjct: 116 YLNED 120
Score = 41.0 bits (97), Expect = 5e-04
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+L L N++ + ++ R+ L + +N I DL+ L +LS L L
Sbjct: 196 ASLTSLHYFTAYVNQITDITPVANM----TRLNSLKIGNNKITDLS---PLANLSQLTWL 248
Query: 141 RLEKN 145
+ N
Sbjct: 249 EIGTN 253
Score = 40.6 bits (96), Expect = 7e-04
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+L + L + + + L + L +A + I+ +E L+NLE L
Sbjct: 19 ADLAEGIRAVLQKASVTDVVTQEELESI----TKLVVAGEKVAS---IQGIEYLTNLEYL 71
Query: 141 RLEKN 145
L N
Sbjct: 72 NLNGN 76
Score = 40.2 bits (95), Expect = 0.001
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
N+ L L ++E+K+ + +L + L L +N I+D I L SL++L
Sbjct: 152 SNMTGLNYLTVTESKVKDVTPIANL----TDLYSLSLNYNQIED---ISPLASLTSLHYF 204
Query: 141 RLEKN 145
N
Sbjct: 205 TAYVN 209
Score = 39.1 bits (92), Expect = 0.002
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
NL L L + NK+ +L +L ++ LYL +NI D I L +L+ + L
Sbjct: 85 SNLVKLTNLYIGTNKITDISALQNL----TNLRELYLNEDNISD---ISPLANLTKMYSL 137
Query: 141 RLEKN 145
L N
Sbjct: 138 NLGAN 142
Score = 38.7 bits (91), Expect = 0.002
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLAT 127
+ ++ + + NL +++LNL N S +S + + L + + +KD
Sbjct: 118 NEDNISDISPL--ANLTKMYSLNLGANHN---LSDLSPLSNMTGLNYLTVTESKVKD--- 169
Query: 128 IRTLESLSNLEELRLEKN 145
+ + +L++L L L N
Sbjct: 170 VTPIANLTDLYSLSLNYN 187
Score = 38.7 bits (91), Expect = 0.003
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
NL DL++L+L+ N++ L SL + N I D I + +++ L L
Sbjct: 174 ANLTDLYSLSLNYNQIEDISPLASL----TSLHYFTAYVNQITD---ITPVANMTRLNSL 226
Query: 141 RLEKN 145
++ N
Sbjct: 227 KIGNN 231
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 44.3 bits (105), Expect = 5e-05
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELR 141
+ +++ L ++ L I + L + N +K + + L++L+++
Sbjct: 252 KKFTFRNVKITDESL---FQVMKLLNQISGLLELEFSRNQLKSVPD-GIFDRLTSLQKIW 307
Query: 142 LEKNPWT 148
L NPW
Sbjct: 308 LHTNPWD 314
Score = 44.0 bits (104), Expect = 5e-05
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 8/104 (7%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
+L AL L+ N + +S SL ++ L L++N + +L++ + LS+L
Sbjct: 74 RCVNLQALVLTSNGINTIEEDSFSSL----GSLEHLDLSYNYLSNLSS-SWFKPLSSLTF 128
Query: 140 LRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFD 183
L L NP+ E ++ + ++ +D F
Sbjct: 129 LNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171
Score = 36.6 bits (85), Expect = 0.014
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 9/98 (9%)
Query: 81 ENLPDLFALNLSENKL--YYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
L L L + + L Y P+SL S+ V L L L I ++ S++E
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSI----QNVSHLILHMKQHILLLEI-FVDVTSSVE 225
Query: 139 ELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQL 176
L L ++ K ++++
Sbjct: 226 CLELRDTDLDT--FHFSELSTGETNSLIKKFTFRNVKI 261
Score = 30.9 bits (70), Expect = 0.82
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 110 PRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145
VK L L++N I ++ L+ NL+ L L N
Sbjct: 52 EAVKSLDLSNNRITYISN-SDLQRCVNLQALVLTSN 86
Score = 30.5 bits (69), Expect = 1.1
Identities = 9/69 (13%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVI----PRVKILYLAHNNIKDLATIRTLESLSNL 137
+L L L + ++ + + ++ L + ++++ ++L+S+ N+
Sbjct: 147 HLTKLQILRVGNM-----DTFTKIQRKDFAGLTFLEELEIDASDLQSYEP-KSLKSIQNV 200
Query: 138 EELRLEKNP 146
L L
Sbjct: 201 SHLILHMKQ 209
Score = 30.5 bits (69), Expect = 1.2
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESL--ISLAKVIPRVKILYLAHNN-IKDLATIRTLESLSNL 137
+ L L LNL N ++L SL + +++IL + + + + + L+ L
Sbjct: 121 KPLSSLTFLNLLGNPY---KTLGETSLFSHLTKLQILRVGNMDTFTKIQR-KDFAGLTFL 176
Query: 138 EELRLEKNP 146
EEL ++ +
Sbjct: 177 EELEIDASD 185
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 44.6 bits (106), Expect = 6e-05
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+P L L L L +S S + + + IL L++NNI ++ LE L LE L
Sbjct: 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND-DMLEGLEKLEIL 509
Query: 141 RLEKN 145
L+ N
Sbjct: 510 DLQHN 514
Score = 43.1 bits (102), Expect = 2e-04
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDL 125
SN + + ++L +L ++L N L + +K L L N I +
Sbjct: 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ----VSLKSLNLQKNLITSV 599
Query: 126 ATIRTLESLSNLEELRLEKNPWT 148
+ NL EL + NP+
Sbjct: 600 EKKVFGPAFRNLTELDMRFNPFD 622
Score = 43.1 bits (102), Expect = 2e-04
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 81 ENLPDLFALNLSENKL--YYPESLISLAKVIPRVKILYLAHNNIKDLATI-RTLESLSNL 137
L ++F + LS NK S + P ++ L L +K++ + + L NL
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALV----PSLQRLMLRRVALKNVDSSPSPFQPLRNL 482
Query: 138 EELRLEKN 145
L L N
Sbjct: 483 TILDLSNN 490
Score = 41.9 bits (99), Expect = 3e-04
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 80 NENLPDLFALNLSENKL--YYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNL 137
+ L LNL++NK+ ++ L +++L L N I T + L N+
Sbjct: 377 SLAHSPLHILNLTKNKISKIESDAFSWL----GHLEVLDLGLNEIGQELTGQEWRGLENI 432
Query: 138 EELRLEKN 145
E+ L N
Sbjct: 433 FEIYLSYN 440
Score = 41.9 bits (99), Expect = 3e-04
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
L +L++ N + PE L P +K+L L HN + L+ +T +NL E
Sbjct: 47 RYSQLTSLDVGFNTISKLEPELCQKL----PMLKVLNLQHNELSQLSD-KTFAFCTNLTE 101
Query: 140 LRLEKN 145
L L N
Sbjct: 102 LHLMSN 107
Score = 40.4 bits (95), Expect = 0.001
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 81 ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
+ L L LNL N E L +KI+ L NN+ L + +L+
Sbjct: 533 KGLSHLHILNLESNGFDEIPVEVFKDL----FELKIIDLGLNNLNTLPA-SVFNNQVSLK 587
Query: 139 ELRLEKN 145
L L+KN
Sbjct: 588 SLNLQKN 594
Score = 40.0 bits (94), Expect = 0.002
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
+L L+L N + + + L L+HN + T L NL+E
Sbjct: 95 FCTNLTELHLMSNSIQKIKNNPFVKQ----KNLITLDLSHNGLSSTKL-GTQVQLENLQE 149
Query: 140 LRLEKN 145
L L N
Sbjct: 150 LLLSNN 155
Score = 39.6 bits (93), Expect = 0.002
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
LP L LNL N+L ++ + L+L N+I+ + NL
Sbjct: 71 KLPMLKVLNLQHNELSQLSDKTFAFC----TNLTELHLMSNSIQKIKN-NPFVKQKNLIT 125
Query: 140 LRLEKN 145
L L N
Sbjct: 126 LDLSHN 131
Score = 39.2 bits (92), Expect = 0.003
Identities = 27/124 (21%), Positives = 41/124 (33%), Gaps = 5/124 (4%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATI 128
N ++S L +L L LS NK+ +S +K L L+ N IK+ +
Sbjct: 130 HNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP- 188
Query: 129 RTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQL--PPPIVFDLED 186
++ L L L E+ I + L L + QL F
Sbjct: 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI--RNLSLSNSQLSTTSNTTFLGLK 246
Query: 187 NIEL 190
L
Sbjct: 247 WTNL 250
Score = 38.4 bits (90), Expect = 0.004
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRV-------KILYLAHN 120
N + + + L ++ LNL + SL SL K+ + L + N
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339
Query: 121 NIKDLATIRTLESLSNLEELRLEKN 145
+I + + L NL+ L L +
Sbjct: 340 DIPGIKS-NMFTGLINLKYLSLSNS 363
Score = 37.3 bits (87), Expect = 0.009
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 80 NENLPDLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNL 137
+L L+LS N L +S L P+++ +L +NNI+ L + +L L N+
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWL----PQLEYFFLEYNNIQHLFS-HSLHGLFNV 298
Query: 138 EELRLEKN 145
L L+++
Sbjct: 299 RYLNLKRS 306
Score = 36.5 bits (85), Expect = 0.016
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 82 NLPDLFALNLSENKLY----YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNL 137
L +L L+LS + E+ +SLA + IL L N I + + L +L
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLA--HSPLHILNLTKNKISKIES-DAFSWLGHL 407
Query: 138 EELRLEKNP 146
E L L N
Sbjct: 408 EVLDLGLNE 416
Score = 36.1 bits (84), Expect = 0.024
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDL-- 125
SN + + LF L L+ +L + L ++ L L+++ +
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239
Query: 126 ATIRTLESLSNLEELRLEKN 145
T L+ +NL L L N
Sbjct: 240 TTFLGLK-WTNLTMLDLSYN 258
Score = 33.4 bits (77), Expect = 0.15
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 83 LPDLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
++ LNL+ N+L + ++ L + N I L + L L+ L
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRY----SQLTSLDVGFNTISKLEP-ELCQKLPMLKVL 78
Query: 141 RLEKNP 146
L+ N
Sbjct: 79 NLQHNE 84
Score = 32.3 bits (74), Expect = 0.33
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
Query: 89 LNLSENKLYYPESLISLAKVIPR-VKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145
+ S KL + +P + +L L HN ++ L S L L + N
Sbjct: 9 ADCSHLKLT------QVPDDLPTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFN 59
Score = 30.7 bits (70), Expect = 0.95
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 9/90 (10%)
Query: 61 NMFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLA 118
+ + + + + L L LN+ +N + L +K L L+
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL----INLKYLSLS 361
Query: 119 HNNIKDLA-TIRTLESL--SNLEELRLEKN 145
++ T T SL S L L L KN
Sbjct: 362 NSFTSLRTLTNETFVSLAHSPLHILNLTKN 391
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 44.1 bits (104), Expect = 6e-05
Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 16/137 (11%)
Query: 82 NLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L L+LS NKL + S V + L +N + + + L NLE
Sbjct: 189 VFAKLKTLDLSSNKLAFMGPEFQSA----AGVTWISLRNNKLVLIE--KALRFSQNLEHF 242
Query: 141 RLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNIELPKPQGSFLCH 200
L N + +R F K ++ + ++ E P
Sbjct: 243 DLRGNGFH---------CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293
Query: 201 PEARDILRAFLEQYFAL 217
D+ F ++ AL
Sbjct: 294 YCCEDLPAPFADRLIAL 310
Score = 39.8 bits (93), Expect = 0.001
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDL 125
+ + + ++ ++ L+LS N L L ++++L L+ N + +
Sbjct: 18 TDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF----TKLELLNLSSNVLYET 73
Query: 126 ATIRTLESLSNLEELRLEKN 145
+ SLS L L L N
Sbjct: 74 LDLE---SLSTLRTLDLNNN 90
Score = 39.4 bits (92), Expect = 0.002
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 79 INENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
I +N ++++ L ++L SL + VK L L+ N + ++ L + LE
Sbjct: 5 IKQNGNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISA-ADLAPFTKLE 61
Query: 139 ELRLEKN 145
L L N
Sbjct: 62 LLNLSSN 68
Score = 39.1 bits (91), Expect = 0.003
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 10/65 (15%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L LNLS N LY L SL ++ L L +N ++ L ++E L
Sbjct: 55 APFTKLELLNLSSNVLYETLDLESL----STLRTLDLNNNYVQ------ELLVGPSIETL 104
Query: 141 RLEKN 145
N
Sbjct: 105 HAANN 109
Score = 37.9 bits (88), Expect = 0.006
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
E+L L L+L+ N + + L+ P ++ L+ A+NNI + + + +
Sbjct: 77 ESLSTLRTLDLNNNYV---QELLVG----PSIETLHAANNNISRV----SCSRGQGKKNI 125
Query: 141 RLEKN 145
L N
Sbjct: 126 YLANN 130
Score = 37.5 bits (87), Expect = 0.008
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 77 NIINENLPDLFALNLSENKLYYPESLISLA-KVIPRVKILYLAHNNIKDLATIRTLESLS 135
+ + L+ NK+ L L RV+ L L N I + S
Sbjct: 113 RVSCSRGQGKKNIYLANNKI---TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169
Query: 136 NLEELRLEKN 145
LE L L+ N
Sbjct: 170 TLEHLNLQYN 179
Score = 36.4 bits (84), Expect = 0.019
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 10/67 (14%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
P + L+ + N + K +YLA+N I L S ++
Sbjct: 97 VGPSIETLHAANNNISRVSCSRGQGK-------KNIYLANNKITMLRD-LDEGCRSRVQY 148
Query: 140 LRLEKNP 146
L L+ N
Sbjct: 149 LDLKLNE 155
Score = 33.3 bits (76), Expect = 0.18
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
+ L+L N++ L + ++ L L +N I D ++ + L+
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAAS---SDTLEHLNLQYNFIYD---VKGQVVFAKLKT 195
Query: 140 LRLEKN 145
L L N
Sbjct: 196 LDLSSN 201
Score = 32.1 bits (73), Expect = 0.38
Identities = 14/119 (11%), Positives = 33/119 (27%), Gaps = 12/119 (10%)
Query: 81 ENLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
++ + ++L NKL ++L ++ L N ++
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKALRFS----QNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266
Query: 140 LRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNIELPKPQGSFL 198
+ + NE++ P L + I L + + + L
Sbjct: 267 VAKQTVKKLTGQNEEECT-------VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318
Score = 31.4 bits (71), Expect = 0.74
Identities = 12/116 (10%), Positives = 33/116 (28%), Gaps = 4/116 (3%)
Query: 77 NIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSN 136
+I + L+ ++ E L + R + + + + +
Sbjct: 306 RLIALKRKEHALLSGQGSET---ERLECERENQARQREIDALKEQYRTV-IDQVTLRKQA 361
Query: 137 LEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNIELPK 192
L +K E + +E+ + + ++Q L+ + K
Sbjct: 362 KITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVK 417
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 44.3 bits (105), Expect = 6e-05
Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 7/83 (8%)
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDL 125
+ + + + L L LN+S N L + L + L + N I+
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL----YSLSTLDCSFNRIETS 536
Query: 126 ATIRTLESLSNLEELRLEKNPWT 148
+L L N
Sbjct: 537 KG-ILQHFPKSLAFFNLTNNSVA 558
Score = 43.1 bits (102), Expect = 2e-04
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 82 NLPDLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
+L L L++S + + L + L +A N+ KD + +NL
Sbjct: 422 SLEKLLYLDISYTNTKIDFDGIFLGL----TSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477
Query: 140 LRLEKN 145
L L K
Sbjct: 478 LDLSKC 483
Score = 42.7 bits (101), Expect = 2e-04
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 80 NENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
+ L L+LS N + ++ L H+ +K + SL L
Sbjct: 372 DLGTNSLRHLDLSFNGAIIMSANFMGL---EELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428
Query: 140 LRLEKN 145
L +
Sbjct: 429 LDISYT 434
Score = 42.3 bits (100), Expect = 2e-04
Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
L L L E KL + L +K L +AHN I +L+NL
Sbjct: 102 GLTSLENLVAVETKLASLESFPIGQL----ITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157
Query: 140 LRLEKN 145
+ L N
Sbjct: 158 VDLSYN 163
Score = 41.6 bits (98), Expect = 4e-04
Identities = 11/73 (15%), Positives = 27/73 (36%), Gaps = 2/73 (2%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L +L L+ + L + + ++ L +++ N K L++L L
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLS-LEKLLYLDISYTNTKID-FDGIFLGLTSLNTL 453
Query: 141 RLEKNPWTECFNE 153
++ N + +
Sbjct: 454 KMAGNSFKDNTLS 466
Score = 40.4 bits (95), Expect = 0.001
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
N +L L+LS ++ ++ L + L L N I+ + + L++LE
Sbjct: 54 NFSELQWLDLSRCEIETIEDKAWHGL----HHLSNLILTGNPIQSFSP-GSFSGLTSLEN 108
Query: 140 LRLEKN 145
L +
Sbjct: 109 LVAVET 114
Score = 39.6 bits (93), Expect = 0.002
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
N +L L+LS+ +L +L R+++L ++HNN+ L + L +L
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFDTL----HRLQLLNMSHNNLLFLDS-SHYNQLYSLST 525
Query: 140 LRLEKN 145
L N
Sbjct: 526 LDCSFN 531
Score = 38.9 bits (91), Expect = 0.003
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 77 NIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDL-ATIRTLESLS 135
+LP L +L L+ NK ++L P + L L+ N + + +
Sbjct: 321 QFPTLDLPFLKSLTLTMNKGSISFKKVAL----PSLSYLDLSRNALSFSGCCSYSDLGTN 376
Query: 136 NLEELRLEKN 145
+L L L N
Sbjct: 377 SLRHLDLSFN 386
Score = 38.9 bits (91), Expect = 0.003
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELR 141
LP L L+LS N L + ++ L L+ N + L L+ L
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM--SANFMGLEELQHLD 405
Query: 142 LEKN 145
+ +
Sbjct: 406 FQHS 409
Score = 38.1 bits (89), Expect = 0.005
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATI 128
S + L ++ A++L+ + Y E + + + L + +K T+
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKH----FKWQSLSIIRCQLKQFPTL 325
Query: 129 RTLESLSNLEELRLEKN 145
L L+ L L N
Sbjct: 326 ----DLPFLKSLTLTMN 338
Score = 33.9 bits (78), Expect = 0.12
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 69 SNVMTSVCNIINENLPDL----FALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKD 124
N + ++ + L + +L++S N + + + A ++ L L N
Sbjct: 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPI---DFIQDQAFQGIKLHELTLRGNFNSS 218
Query: 125 LATIRTLESLSNLEELRLEKNPWTECFN 152
L++L+ L RL + + N
Sbjct: 219 NIMKTCLQNLAGLHVHRLILGEFKDERN 246
Score = 33.1 bits (76), Expect = 0.19
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 10/72 (13%)
Query: 81 ENLPDLFALNLSENKLYY---PESLISLAKVIPRVKILYLAHNNIKDL--ATIRTLESLS 135
L L LN++ N ++ P +L + + L++N I+ + ++ L
Sbjct: 125 GQLITLKKLNVAHNFIHSCKLPAYFSNL----TNLVHVDLSYNYIQTITVNDLQFLRENP 180
Query: 136 -NLEELRLEKNP 146
L + NP
Sbjct: 181 QVNLSLDMSLNP 192
Score = 33.1 bits (76), Expect = 0.22
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Query: 89 LNLSENKLYYPESLISLAKVIPR-VKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145
+ KL + IP K + L+ N +K L + + S L+ L L +
Sbjct: 16 YQCMDQKLS------KVPDDIPSSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRC 66
Score = 32.7 bits (75), Expect = 0.26
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 84 PDLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELR 141
++LS N L S + ++ L L+ I+ + + L +L L
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNF----SELQWLDLSRCEIETIED-KAWHGLHHLSNLI 86
Query: 142 LEKNP 146
L NP
Sbjct: 87 LTGNP 91
Score = 31.5 bits (72), Expect = 0.66
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 79 INENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
I E L D+ I + V + LA +IK + + +
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK---YLEDVPKHFKWQ 310
Query: 139 ELRLEKN 145
L + +
Sbjct: 311 SLSIIRC 317
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 44.0 bits (104), Expect = 7e-05
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
L L L + +++ + L + L LAHNN+ L L L E
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGL----ASLVELNLAHNNLSSLPH-DLFTPLRYLVE 294
Query: 140 LRLEKNPW 147
L L NPW
Sbjct: 295 LHLHHNPW 302
Score = 44.0 bits (104), Expect = 8e-05
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
+L L L L N + + L + L L N + + + E LS L E
Sbjct: 97 HLHHLEVLQLGRNSIRQIEVGAFNGL----ASLNTLELFDNWLTVIPS-GAFEYLSKLRE 151
Query: 140 LRLEKNP 146
L L NP
Sbjct: 152 LWLRNNP 158
Score = 43.6 bits (103), Expect = 1e-04
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 66 LDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDL 125
L + + E L +L LNL + +L L ++ L ++ N+ ++
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPL----VGLEELEMSGNHFPEI 233
Query: 126 ATIRTLESLSNLEELRLEKN 145
+ LS+L++L + +
Sbjct: 234 RP-GSFHGLSSLKKLWVMNS 252
Score = 40.5 bits (95), Expect = 8e-04
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 81 ENLPDLFALNLSE-NKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNL 137
+P L L+L E KL Y + L +K L L NIKD + L L L
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGL----FNLKYLNLGMCNIKD---MPNLTPLVGL 220
Query: 138 EELRLEKNP 146
EEL + N
Sbjct: 221 EELEMSGNH 229
Score = 37.4 bits (87), Expect = 0.008
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 81 ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
L L L L +N L + L +++ L+L +N I+ + + + +L
Sbjct: 120 NGLASLNTLELFDNWLTVIPSGAFEYL----SKLRELWLRNNPIESIPS-YAFNRVPSLM 174
Query: 139 ELRLEKN 145
L L +
Sbjct: 175 RLDLGEL 181
Score = 33.2 bits (76), Expect = 0.15
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 110 PRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145
+ L L NNI+ + T L +LE L+L +N
Sbjct: 75 SNTRYLNLMENNIQMIQA-DTFRHLHHLEVLQLGRN 109
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 44.1 bits (104), Expect = 7e-05
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRV-------KILYLAHNNIKDLATIRTLESL 134
+LP+L +LN++ N+ L + + +I Y+ +NN+++ +L+ +
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKM 572
Query: 135 SNLEELRLEKN 145
L L N
Sbjct: 573 VKLGLLDCVHN 583
Score = 42.9 bits (101), Expect = 2e-04
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 81 ENLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
L L L N++ PE + +V+ L +HN +K + I +S+ +
Sbjct: 592 GTNVKLTDLKLDYNQIEEIPEDFCAFT---DQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648
Query: 140 LRLEKNPWTE 149
+ N
Sbjct: 649 VDFSYNKIGS 658
Score = 37.5 bits (87), Expect = 0.008
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELR 141
P + + N L + SL K + ++ +L HN ++ + + L +L+
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASASLQK-MVKLGLLDCVHNKVR---HLEAFGTNVKLTDLK 601
Query: 142 LEKN 145
L+ N
Sbjct: 602 LDYN 605
Score = 37.5 bits (87), Expect = 0.009
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 82 NLPDLFALNLSENKL-YYPESLISLAKV----IPRVKILYLAHNNIKDLATIRTLESLSN 136
+ + LS N + PE+ + + + L N + L+ +L
Sbjct: 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754
Query: 137 LEELRLEKN 145
L + + N
Sbjct: 755 LSNMDVSYN 763
Score = 36.4 bits (84), Expect = 0.018
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 79 INENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNI----KDLATIRTLESL 134
+ L S NKL Y ++ + + + + ++N I ++++
Sbjct: 614 FCAFTDQVEGLGFSHNKLKYIPNIFNAKS-VYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672
Query: 135 SNLEELRLEKN 145
N + L N
Sbjct: 673 INASTVTLSYN 683
Score = 35.6 bits (82), Expect = 0.034
Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 5/109 (4%)
Query: 68 RSNVMTSVCNIIN-ENLPDLFALNLSENKL-YYPESLISLAKVI--PRVKILYLAHNNIK 123
N + + NI N +++ + +++ S NK+ ++ + L++N I+
Sbjct: 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686
Query: 124 DLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLD 172
T + S + + L N T K L +D
Sbjct: 687 KFPT-ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734
Score = 34.5 bits (79), Expect = 0.075
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 10/75 (13%)
Query: 77 NIINENLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDLATI-----RT 130
+ LP L +++S N P ++ ++K + H + I
Sbjct: 746 DFRATTLPYLSNMDVSYNCFSSFPTQPLNS----SQLKAFGIRHQRDAEGNRILRQWPTG 801
Query: 131 LESLSNLEELRLEKN 145
+ + +L +L++ N
Sbjct: 802 ITTCPSLIQLQIGSN 816
Score = 33.3 bits (76), Expect = 0.16
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 14/74 (18%)
Query: 82 NLPDLFALNLSENKL--YYPESLISLAKVIPRVKILYLAHNNIKDLATIR--------TL 131
NL DL + L P+ L L P ++ L +A N A ++
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDL----PELQSLNIACNRGISAAQLKADWTRLADDE 544
Query: 132 ESLSNLEELRLEKN 145
++ ++ + N
Sbjct: 545 DTGPKIQIFYMGYN 558
Score = 31.4 bits (71), Expect = 0.62
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 82 NLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESL-SNLEE 139
P L L + N + E L P++ IL +A N + + + +
Sbjct: 804 TCPSLIQLQIGSNDIRKVDEKL------TPQLYILDIADNPNISIDVTSVCPYIEAGMYV 857
Query: 140 LRLEKNPW 147
L +K
Sbjct: 858 LLYDKTQD 865
Score = 29.1 bits (65), Expect = 4.0
Identities = 10/84 (11%), Positives = 26/84 (30%), Gaps = 12/84 (14%)
Query: 70 NVMTSVCNIIN------ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNN 121
N + + +N + L+L+ P+++ L +K+L ++
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQL----TELKVLSFGTHS 358
Query: 122 IKDLATIRTLESLSNLEELRLEKN 145
+ E L+ +
Sbjct: 359 ETVSGRLFGDEELTPDMSEERKHR 382
Score = 27.9 bits (62), Expect = 8.1
Identities = 7/65 (10%), Positives = 16/65 (24%), Gaps = 10/65 (15%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATI-RTLESLSNLEEL 140
L L + + + V + K + +L +L ++
Sbjct: 446 RLTKLQIIYFANSPF---------TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496
Query: 141 RLEKN 145
L
Sbjct: 497 ELYNC 501
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2
PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A
1jb4_A 1jb2_A 1qma_A
Length = 127
Score = 41.0 bits (96), Expect = 9e-05
Identities = 32/154 (20%), Positives = 43/154 (27%), Gaps = 40/154 (25%)
Query: 200 HPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRN 259
P I +F++ Y+ LFD R L Y + +
Sbjct: 4 KPIWEQIGSSFIQHYYQLFDN-DRTQLGAIYIDASC------------------------ 38
Query: 260 LLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGLIQFSVCGLYEE 319
L + GKA I+ L LP K D I V G
Sbjct: 39 LTWEGQQ-------FQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQL-- 89
Query: 320 ITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITND 353
K I F++ FLL + TND
Sbjct: 90 -----KADEDPIMGFHQMFLLKN-INDAWVCTND 117
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 43.5 bits (103), Expect = 1e-04
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 81 ENLPDLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
NL L +LNLS N+ E+ P++++L LA +K ++L L+
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKEC----PQLELLDLAFTRLKVKDAQSPFQNLHLLK 428
Query: 139 ELRLEKN 145
L L +
Sbjct: 429 VLNLSHS 435
Score = 42.7 bits (101), Expect = 2e-04
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATI 128
N++ + N + L+ + + V+ + L + ++ +
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI-SS 271
Query: 129 RTLESLSNLEELRLEKN 145
T S L+EL L
Sbjct: 272 NTFHCFSGLQELDLTAT 288
Score = 42.7 bits (101), Expect = 2e-04
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
ENL +L L+LS + + + + + ++ L L++N L + LE L
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL-KTEAFKECPQLELL 405
Query: 141 RLEKNPWTEC 150
L
Sbjct: 406 DLAFTRLKVK 415
Score = 42.3 bits (100), Expect = 2e-04
Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 16/132 (12%)
Query: 23 LNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLDR-------SNVMTSV 75
+ + +D V ++++L K Y + +N F + ++ +
Sbjct: 236 EDMDDEDISPAVFEGLCEMSVESINLQKHYFF--NISSNTFHCFSGLQELDLTATHLSEL 293
Query: 76 CNIINENLPDLFALNLSENKL--YYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLES 133
+ + L L L LS NK S + P + L + N + LE+
Sbjct: 294 PSGLV-GLSTLKKLVLSANKFENLCQISASNF----PSLTHLSIKGNTKRLELGTGCLEN 348
Query: 134 LSNLEELRLEKN 145
L NL EL L +
Sbjct: 349 LENLRELDLSHD 360
Score = 41.5 bits (98), Expect = 4e-04
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
+L + ++LS N+L E+L L + L LA N+I + L LS
Sbjct: 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGIY-----LNLASNHISIIL-PSLLPILSQQRT 551
Query: 140 LRLEKNPWT 148
+ L +NP
Sbjct: 552 INLRQNPLD 560
Score = 40.8 bits (96), Expect = 8e-04
Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+ P L L+L+ +L ++ + +K+L L+H+ + + + + L L+ L
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQN-LHLLKVLNLSHSLLDISSE-QLFDGLPALQHL 454
Query: 141 RLEKNPWTE 149
L+ N + +
Sbjct: 455 NLQGNHFPK 463
Score = 40.4 bits (95), Expect = 0.001
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 81 ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIR--TLESLSN 136
+NL L LNLS + L + L P ++ L L N+ + +L++L
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGL----PALQHLNLQGNHFPKGNIQKTNSLQTLGR 477
Query: 137 LEELRLEKN 145
LE L L
Sbjct: 478 LEILVLSFC 486
Score = 40.0 bits (94), Expect = 0.001
Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKL-YYPESLISLAKVIPRVKILYLAHNNIKDLAT 127
+++ + + LP L LNL N + + + R++IL L+ ++ +
Sbjct: 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI-D 492
Query: 128 IRTLESLSNLEELRLEKN 145
SL + + L N
Sbjct: 493 QHAFTSLKMMNHVDLSHN 510
Score = 39.6 bits (93), Expect = 0.002
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
L +L L+L+ ++Y+ ++ S R+ L L N + +A L L+
Sbjct: 55 RLINLTFLDLTRCQIYWIHEDTFQSQ----HRLDTLVLTANPLIFMAE-TALSGPKALKH 109
Query: 140 LRLEKN 145
L +
Sbjct: 110 LFFIQT 115
Score = 38.5 bits (90), Expect = 0.004
Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 5/65 (7%)
Query: 82 NLPDLFALNLSENKLYYPESLISLA-KVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L L + + S+ + ++ LYL N+I + + L+ L
Sbjct: 103 GPKALKHLFFIQTGI---SSIDFIPLHNQKTLESLYLGSNHISSIK-LPKGFPTEKLKVL 158
Query: 141 RLEKN 145
+ N
Sbjct: 159 DFQNN 163
Score = 36.1 bits (84), Expect = 0.021
Identities = 15/66 (22%), Positives = 20/66 (30%), Gaps = 7/66 (10%)
Query: 83 LPDLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L S N L + L + L L I + T +S L+ L
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSRL----INLTFLDLTRCQIYWIHE-DTFQSQHRLDTL 86
Query: 141 RLEKNP 146
L NP
Sbjct: 87 VLTANP 92
Score = 35.4 bits (82), Expect = 0.036
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 7/63 (11%)
Query: 82 NLPDLFALNLSENKL--YYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
N L +L L N + ++K+L +N I L+ + SL
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPT----EKLKVLDFQNNAIHYLSK-EDMSSLQQATN 181
Query: 140 LRL 142
L L
Sbjct: 182 LSL 184
Score = 30.8 bits (70), Expect = 0.92
Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 6/118 (5%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLA 126
SN ++S+ L L+ N ++Y E + SL + L L N+I +
Sbjct: 138 SNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA--TNLSLNLNGNDIAGIE 195
Query: 127 TIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDL 184
+ + L + ++ +DD + P + L
Sbjct: 196 --PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 42.7 bits (101), Expect = 1e-04
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 82 NLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+P L L+LS N L + + R++ LYL HN+I L L + L+ L
Sbjct: 293 PIPTLKVLDLSHNHLLHVERNQPQF----DRLENLYLDHNSIVTLK----LSTHHTLKNL 344
Query: 141 RLEKNPWT 148
L N W
Sbjct: 345 TLSHNDWD 352
Score = 41.2 bits (97), Expect = 5e-04
Identities = 14/80 (17%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDL 125
+++ M + + ++ + LNL++ ++ + ++ LY+ N I+ L
Sbjct: 53 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA----HTIQKLYMGFNAIRYL 108
Query: 126 ATIRTLESLSNLEELRLEKN 145
+++ L L LE+N
Sbjct: 109 PP-HVFQNVPLLTVLVLERN 127
Score = 40.0 bits (94), Expect = 0.001
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 80 NENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
+L L L N L L++ P + + L++N ++ + + LE
Sbjct: 222 GPVNVELTILKLQHNNLTDTAWLLNY----PGLVEVDLSYNELEKIMY-HPFVKMQRLER 276
Query: 140 LRLEKN 145
L + N
Sbjct: 277 LYISNN 282
Score = 38.9 bits (91), Expect = 0.003
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 81 ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
N P L ++LS N+L + + R++ LY+++N + L + + L+
Sbjct: 245 LNYPGLVEVDLSYNELEKIMYHPFVKM----QRLERLYISNNRLVALN--LYGQPIPTLK 298
Query: 139 ELRLEKN 145
L L N
Sbjct: 299 VLDLSHN 305
Score = 36.6 bits (85), Expect = 0.013
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 17/78 (21%)
Query: 82 NLPDLFALNLSENKLYYPESLISL--------------AKVIPRVKILYLAHNNIKDLAT 127
+P LF N+S N L I++ V + IL L HNN+ D A
Sbjct: 184 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA- 242
Query: 128 IRTLESLSNLEELRLEKN 145
L + L E+ L N
Sbjct: 243 --WLLNYPGLVEVDLSYN 258
Score = 36.2 bits (84), Expect = 0.021
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDL 125
N ++S+ I N P L L++S N L ++ + ++ L L+ N + +
Sbjct: 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT----TSLQNLQLSSNRLTHV 180
Query: 126 ATIRTLESLSNLEELRLEKN 145
L + +L + N
Sbjct: 181 ----DLSLIPSLFHANVSYN 196
Score = 34.6 bits (80), Expect = 0.052
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+ L L LS N+L + + L+ +IP + +++N + TL +EEL
Sbjct: 162 QATTSLQNLQLSSNRL----THVDLS-LIPSLFHANVSYNLLS------TLAIPIAVEEL 210
Query: 141 RLEKN 145
N
Sbjct: 211 DASHN 215
Score = 32.7 bits (75), Expect = 0.20
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 89 LNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145
+++ +Y+ I+L KI+ ++ ++ L L+S +E L L
Sbjct: 28 IDMQTQDVYFGFEDITL----NNQKIVTFKNSTMRKLPA-ALLDSFRQVELLNLNDL 79
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces
cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Length = 125
Score = 40.6 bits (95), Expect = 2e-04
Identities = 28/154 (18%), Positives = 48/154 (31%), Gaps = 40/154 (25%)
Query: 201 PEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNL 260
+ + + F + Y+ FDT R+ L + Y + L
Sbjct: 3 LDFNTLAQNFTQFYYNQFDT-DRSQLGNLYRNESM------------------------L 37
Query: 261 LRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDC-PLYTPGLIQFSVCGLYEE 319
G DI+ L LP K T D P G + + G
Sbjct: 38 TFETSQ-------LQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPYGDVLVMITG---- 86
Query: 320 ITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITND 353
++ + + F++ F L+P G + + ND
Sbjct: 87 --DLLIDEEQNPQRFSQVFHLIP-DGNSYYVFND 117
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET:
EPE; 2.74A {Drosophila melanogaster}
Length = 120
Score = 40.2 bits (94), Expect = 2e-04
Identities = 25/151 (16%), Positives = 44/151 (29%), Gaps = 38/151 (25%)
Query: 203 ARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLR 262
+ R F+ QY+ L + + L Y+ N+ Y G
Sbjct: 3 HMSVGREFVRQYYTLLNK-APNHLHRFYNHNSSY----IHGESKLV-------------- 43
Query: 263 IEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITT 322
VG+ +I ++ L D + V G
Sbjct: 44 ------------VGQREIHNRIQQLNFNDCHAKISQVDAQATLGNGVVVQVTG------- 84
Query: 323 GTKNKSKLIRAFNRAFLLVPRSGGGFAITND 353
N + +R F + F+L +S + + ND
Sbjct: 85 ELSNDGQPMRRFTQTFVLAAQSPKKYYVHND 115
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 42.7 bits (101), Expect = 2e-04
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
+L +L L++S L +++L +A N+ ++ L NL
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGL----SSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 140 LRLEKN 145
L L +
Sbjct: 475 LDLSQC 480
Score = 42.3 bits (100), Expect = 3e-04
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDLAT 127
C+ + L L+LS N + + + L +++ L H+N+K ++
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL----EQLEHLDFQHSNLKQMSE 413
Query: 128 IRTLESLSNLEELRLEKN 145
SL NL L +
Sbjct: 414 FSVFLSLRNLIYLDISHT 431
Score = 41.9 bits (99), Expect = 4e-04
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELR 141
+LP L L+LS N L + +K L L+ N + + L LE L
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM--SSNFLGLEQLEHLD 402
Query: 142 LEKN 145
+ +
Sbjct: 403 FQHS 406
Score = 41.2 bits (97), Expect = 6e-04
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
L L L E L + L +K L +AHN I+ +L+NLE
Sbjct: 98 GLSSLQKLVAVETNLASLENFPIGHL----KTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153
Query: 140 LRLEKN 145
L L N
Sbjct: 154 LDLSSN 159
Score = 39.6 bits (93), Expect = 0.002
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
+ P+L L+LS ++ + SL + L L N I+ LA LS+L++
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSL----SHLSTLILTGNPIQSLAL-GAFSGLSSLQK 104
Query: 140 LRLEKN 145
L +
Sbjct: 105 LVAVET 110
Score = 39.6 bits (93), Expect = 0.002
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
+L L LN+S N + L +++L + N+I S+L
Sbjct: 492 SLSSLQVLNMSHNNFFSLDTFPYKCL----NSLQVLDYSLNHIMTSKKQELQHFPSSLAF 547
Query: 140 LRLEKNPWT 148
L L +N +
Sbjct: 548 LNLTQNDFA 556
Score = 38.9 bits (91), Expect = 0.003
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 81 ENLPDLFALNLSENKLY---YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNL 137
L L L ++ N P+ L + L L+ ++ L + SLS+L
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTEL----RNLTFLDLSQCQLEQL-SPTAFNSLSSL 496
Query: 138 EELRLEKN 145
+ L + N
Sbjct: 497 QVLNMSHN 504
Score = 38.1 bits (89), Expect = 0.005
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 82 NLPDLFALNLSENKLY---YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
L L L+ + L +SL + L ++H + + LS+LE
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSL----RNLIYLDISHTHTRVAFN-GIFNGLSSLE 448
Query: 139 ELRLEKNPWTECFN 152
L++ N + E F
Sbjct: 449 VLKMAGNSFQENFL 462
Score = 37.7 bits (88), Expect = 0.008
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 77 NIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATI-RTLESLS 135
L L L + NK S + L P ++ L L+ N + ++ +
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDL----PSLEFLDLSRNGLSFKGCCSQSDFGTT 373
Query: 136 NLEELRLEKN 145
+L+ L L N
Sbjct: 374 SLKYLDLSFN 383
Score = 33.1 bits (76), Expect = 0.21
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 79 INENLP-DLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLS 135
I +NLP L+LS N L S S P +++L L+ I+ + +SLS
Sbjct: 22 IPDNLPFSTKNLDLSFNPLRHLGSYSFFSF----PELQVLDLSRCEIQTIED-GAYQSLS 76
Query: 136 NLEELRLEKNP 146
+L L L NP
Sbjct: 77 HLSTLILTGNP 87
Score = 31.2 bits (71), Expect = 0.78
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 82 NLPDLFALNLSENKLYY---PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
+L L LN++ N + PE +L ++ L L+ N I+ + L L +
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNL----TNLEHLDLSSNKIQSI-YCTDLRVLHQMP 176
Query: 139 ELRLE 143
L L
Sbjct: 177 LLNLS 181
Score = 30.8 bits (70), Expect = 1.1
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)
Query: 68 RSNVMTSVCNIINENLPDL----FALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIK 123
SN + S+ L + +L+LS N + + A R+ L L +N
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM---NFIQPGAFKEIRLHKLTLRNNFDS 213
Query: 124 DLATIRTLESLSNLEELRLEKN 145
++ L+ LE RL
Sbjct: 214 LNVMKTCIQGLAGLEVHRLVLG 235
Score = 30.0 bits (68), Expect = 2.0
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 7/72 (9%)
Query: 78 IINENLPDLFALNLSENKL----YYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLES 133
L L L + E +L YY + +I L + V L I+ ++
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE---RVKDFSY 302
Query: 134 LSNLEELRLEKN 145
+ L L
Sbjct: 303 NFGWQHLELVNC 314
Score = 28.1 bits (63), Expect = 7.1
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNI 122
+ L L L+ S N + + L + L L N+
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQ-ELQHFPSSLAFLNLTQNDF 555
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural
genomics consortium, SGC, transport protein; 1.60A
{Cryptosporidium parvum} SCOP: d.17.4.2
Length = 129
Score = 39.9 bits (93), Expect = 2e-04
Identities = 31/154 (20%), Positives = 47/154 (30%), Gaps = 41/154 (26%)
Query: 201 PEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNL 260
P+ I + F++ Y+ F T +R L Y + + TQ
Sbjct: 9 PQFDQIGKQFVQHYYQTFQT-NRPALGGLYGPQSMLTWEDTQ------------------ 49
Query: 261 LRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEI 320
G+A+I+ L + DC Q S
Sbjct: 50 -------------FQGQANIVNKFNSLNFQRVQFEITRVDC--------QPSPNNGSIVF 88
Query: 321 TTGT-KNKSKLIRAFNRAFLLVPRSGGGFAITND 353
TG + F++ F L+P GGF I ND
Sbjct: 89 VTGDVRIDDGQPLKFSQVFNLMPSGNGGFMIFND 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 41.4 bits (97), Expect = 4e-04
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 82 NLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNL--E 138
++ L L LS+N++ P LI +P++ +L L+ N +K L L+ L
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TDLQKLPAWVKN 192
Query: 139 ELRLEKNPWT 148
L L NP
Sbjct: 193 GLYLHNNPLE 202
Score = 39.4 bits (92), Expect = 0.002
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
L +L +L LS N L + E+ + + P ++ L L+ N++ L L LE
Sbjct: 62 RLTNLHSLLLSHNHLNFISSEAFVPV----PNLRYLDLSSNHLHTLDE-FLFSDLQALEV 116
Query: 140 LRLEKNP 146
L L N
Sbjct: 117 LLLYNNH 123
Score = 38.7 bits (90), Expect = 0.003
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 81 ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
+P+L L+LS N L+ L +++L L +N+I + E ++ L+
Sbjct: 85 VPVPNLRYLDLSSNHLHTLDEFLFSDL----QALEVLLLYNNHIVVVDR-NAFEDMAQLQ 139
Query: 139 ELRLEKN 145
+L L +N
Sbjct: 140 KLYLSQN 146
Score = 32.5 bits (74), Expect = 0.24
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 109 IPR-VKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145
+P +L L+HNN+ L T L+NL L L N
Sbjct: 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN 74
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens}
SCOP: d.17.4.2 PDB: 1jn5_A
Length = 140
Score = 39.6 bits (92), Expect = 4e-04
Identities = 25/160 (15%), Positives = 42/160 (26%), Gaps = 46/160 (28%)
Query: 201 PEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNL 260
+A F+ Y+ D R L Y A N
Sbjct: 11 DQACRAAEEFVNVYYTTMDK-RRRLLSRLYMGTATL--------------------VWN- 48
Query: 261 LRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTC----DCPLYTPGLIQFSVCGL 316
G+ + LP+++ + C D + + +CG
Sbjct: 49 ----------GNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGS 98
Query: 317 YEEITTGTKNKSKLIRAFNRAFLLVP---RSGGGFAITND 353
K + R FN+ F+L S + I +D
Sbjct: 99 V-------KFEGNKQRDFNQNFILTAQASPSNTVWKIASD 131
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 41.3 bits (97), Expect = 5e-04
Identities = 15/68 (22%), Positives = 26/68 (38%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L +L L L++ L + K + +++L L NNIK + ++ L
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159
Query: 141 RLEKNPWT 148
L N
Sbjct: 160 DLTFNKVK 167
Score = 41.3 bits (97), Expect = 5e-04
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
NL L L+LS N + +S + L P +K L L N +K + + L++L++
Sbjct: 345 NLDKLEVLDLSYNHIRALGDQSFLGL----PNLKELALDTNQLKSVPD-GIFDRLTSLQK 399
Query: 140 LRLEKNPW 147
+ L NPW
Sbjct: 400 IWLHTNPW 407
Score = 39.0 bits (91), Expect = 0.003
Identities = 23/113 (20%), Positives = 33/113 (29%), Gaps = 24/113 (21%)
Query: 82 NLPDLFALNLSENKLYY---PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
L DL L + + + L + IL L +N L T L+NLE
Sbjct: 52 RLQDLQFLKVEQQTPGLVIRNNTFRGL----SSLIILKLDYNQFLQLET-GAFNGLANLE 106
Query: 139 ELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQL--------PPPIVFD 183
L L + + F L L+ + L P F
Sbjct: 107 VLTLTQCNLDGAVLSGNF--------FKPLTSLEMLVLRDNNIKKIQPASFFL 151
Score = 37.0 bits (86), Expect = 0.010
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLA 126
+ + ++ + + DL L L++N++ + L + L L+ N + +
Sbjct: 284 KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH----LLKLNLSQNFLGSID 339
Query: 127 TIRTLESLSNLEELRLEKN 145
+ R E+L LE L L N
Sbjct: 340 S-RMFENLDKLEVLDLSYN 357
Score = 31.3 bits (71), Expect = 0.76
Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 15/119 (12%)
Query: 46 LDLSKFYADPDFVEANMFVPLD-------RSNVMTSVC-NIINENLPDLFALNLSENKLY 97
L L++ D + N F PL R N + + N+ L+L+ NK+
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167
Query: 98 YPESLISLAKVIPRVKILYLAHNNIKDL-------ATIRTLESLSNLEELRLEKNPWTE 149
L +L L+ ++D+ +++ L L N + E
Sbjct: 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE 226
Score = 29.7 bits (67), Expect = 1.9
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELR 141
+ + P++ VK L+ + I L ++LE+L
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK-SVFSHFTDLEQLT 305
Query: 142 LEKN 145
L +N
Sbjct: 306 LAQN 309
Score = 29.7 bits (67), Expect = 2.0
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 10/75 (13%)
Query: 73 TSVCNIINENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRT 130
V + + ++LS N + S L ++ L + + T
Sbjct: 23 HQVPEL----PAHVNYVDLSLNSIAELNETSFSRL----QDLQFLKVEQQTPGLVIRNNT 74
Query: 131 LESLSNLEELRLEKN 145
LS+L L+L+ N
Sbjct: 75 FRGLSSLIILKLDYN 89
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 40.8 bits (96), Expect = 5e-04
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 10/72 (13%)
Query: 81 ENLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDL-----ATIRTLESL 134
LP L L+L NKL P L L ++++YL NNI + +
Sbjct: 238 SFLPTLRELHLDNNKLSRVPAGLPDL----KLLQVVYLHTNNITKVGVNDFCPVGFGVKR 293
Query: 135 SNLEELRLEKNP 146
+ + L NP
Sbjct: 294 AYYNGISLFNNP 305
Score = 39.6 bits (93), Expect = 0.001
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
L L+AL L NK+ ++ L +++ LY++ N++ ++ S+L E
Sbjct: 76 GLQHLYALVLVNNKISKIHEKAFSPL----RKLQKLYISKNHLVEIPP----NLPSSLVE 127
Query: 140 LRLEKN 145
LR+ N
Sbjct: 128 LRIHDN 133
Score = 37.3 bits (87), Expect = 0.007
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 10/71 (14%)
Query: 81 ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
L L L +S+N L P SL L + N I+ + L N+
Sbjct: 99 SPLRKLQKLYISKNHLVEIPPNLPSSL-------VELRIHDNRIRKVPK-GVFSGLRNMN 150
Query: 139 ELRLEKNPWTE 149
+ + NP
Sbjct: 151 CIEMGGNPLEN 161
Score = 36.5 bits (85), Expect = 0.012
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
L+ L L N++ SL L P ++ L+L +N + + L L L+
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFL----PTLRELHLDNNKLSRVP--AGLPDLKLLQV 268
Query: 140 LRLEKNPWTE 149
+ L N T+
Sbjct: 269 VYLHTNNITK 278
Score = 36.1 bits (84), Expect = 0.015
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 13/69 (18%)
Query: 81 ENLPDLFALNLSENKLYY----PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSN 136
L ++ + + N L P + L ++ L ++ + + +
Sbjct: 144 SGLRNMNCIEMGGNPLENSGFEPGAFDGL-----KLNYLRISEAKLTGIPK----DLPET 194
Query: 137 LEELRLEKN 145
L EL L+ N
Sbjct: 195 LNELHLDHN 203
Score = 35.8 bits (83), Expect = 0.022
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 84 PDLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELR 141
PD L+L N + + L + L L +N I + + L L++L
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGL----QHLYALVLVNNKISKIHE-KAFSPLRKLQKLY 108
Query: 142 LEKN 145
+ KN
Sbjct: 109 ISKN 112
Score = 33.8 bits (78), Expect = 0.085
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 86 LFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLE 143
L L +SE KL + +L L+L HN I+ + L S L L L
Sbjct: 174 LNYLRISEAKLTGIPKDLPETL-------NELHLDHNKIQAIEL-EDLLRYSKLYRLGLG 225
Query: 144 KNP 146
N
Sbjct: 226 HNQ 228
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 38.6 bits (90), Expect = 7e-04
Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 104 SLAKVIPR-VKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECF 151
SL P L L NN+ L L++L L L NPW C
Sbjct: 24 SLPTAFPVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWR-CD 70
>3q90_A RAS GTPase-activating protein-binding protein 1; structural
genomics, structural genomics consortium, SGC, NT (A+B
proteins); 1.70A {Homo sapiens}
Length = 140
Score = 38.7 bits (90), Expect = 7e-04
Identities = 27/155 (17%), Positives = 44/155 (28%), Gaps = 33/155 (21%)
Query: 201 PEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNL 260
P + R F+ QY+ L + + L Y +N+ Y G
Sbjct: 7 PSPLLVGREFVRQYYTLLNQ-APDMLHRFYGKNSSYVHGGLDSNGKPADAVY-------- 57
Query: 261 LRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEI 320
G+ +I R + T D + V G
Sbjct: 58 ---------------GQKEIHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMG----- 97
Query: 321 TTGTKNKSKLIRAFNRAFLLVP--RSGGGFAITND 353
N ++ +R F + F+L P F + ND
Sbjct: 98 --LLSNNNQALRRFMQTFVLAPEGSVANKFYVHND 130
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 40.8 bits (96), Expect = 7e-04
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 82 NLPDLFALNLSENKLYYPESLI-SLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+ L +LNL+ N++ + + +V+ L AHN +K + I +S+S + +
Sbjct: 351 SEIKLASLNLAYNQI---TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAI 407
Query: 141 RLEKNP 146
N
Sbjct: 408 DFSYNE 413
Score = 39.3 bits (92), Expect = 0.002
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRV------KILYLAHNNIKDLATIRTLESLS 135
LP++ +N++ N+ E L + + +I+Y+ +NN+K +L+ +
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK 330
Query: 136 NLEELRLEKN 145
L L N
Sbjct: 331 KLGMLECLYN 340
Score = 36.2 bits (84), Expect = 0.020
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 13/74 (17%)
Query: 81 ENLPDLFALNLSENKL---------YYPESLISLAKVIPRVKILYLAHNNIKDLATIRTL 131
L ++NL N L E+ + + + L N + L+
Sbjct: 454 STGSPLSSINLMGNMLTEIPKNSLKDENENFKNT----YLLTSIDLRFNKLTKLSDDFRA 509
Query: 132 ESLSNLEELRLEKN 145
+L L + L N
Sbjct: 510 TTLPYLVGIDLSYN 523
Score = 36.2 bits (84), Expect = 0.024
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 82 NLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDL-ATIRTLESLSNLEE 139
+ L L N+L + S ++ L LA+N I ++ A +E
Sbjct: 328 KMKKLGMLECLYNQLEGKLPAFGSE----IKLASLNLAYNQITEIPANF--CGFTEQVEN 381
Query: 140 LRLEKN 145
L N
Sbjct: 382 LSFAHN 387
Score = 33.5 bits (77), Expect = 0.17
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 77 NIINENLPDLFALNLSENKLYY-PESLISLAK--VIPRVKILYLAHNNIKDLATI-RTLE 132
+ LP L ++LS N P ++ + N L +
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT--LREWPEGIT 563
Query: 133 SLSNLEELRLEKN 145
+L +L++ N
Sbjct: 564 LCPSLTQLQIGSN 576
Score = 33.1 bits (76), Expect = 0.22
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 82 NLPDLFALNLSENKL--YYPESLISLAKVI---PRVKILYLAHNNIKDLATIRTLESLSN 136
++ + A++ S N++ ++ L V + L++N I + S
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK-ELFSTGSP 458
Query: 137 LEELRLEKN 145
L + L N
Sbjct: 459 LSSINLMGN 467
Score = 29.2 bits (66), Expect = 2.8
Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
+ + L+L P+++ L +++L L + K + + +S
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQL----TELEVLALGSHGEKVNERLFGPKGISANMS 134
Query: 140 LRL 142
Sbjct: 135 DEQ 137
Score = 29.2 bits (66), Expect = 3.4
Identities = 10/70 (14%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 77 NIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSN 136
E+ DL ++ + +S+ +++ + + NNI ++ + + L+
Sbjct: 152 YDPREDFSDLIKDCINSDPQ--QKSIKKSSRITLKDTQIGQLSNNITFVS--KAVMRLTK 207
Query: 137 LEELRLEKNP 146
L + + +P
Sbjct: 208 LRQFYMGNSP 217
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 40.3 bits (94), Expect = 0.001
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 3/70 (4%)
Query: 81 ENLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
E L AL++S N L P + N I + + SL
Sbjct: 177 ELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIP--ENILSLDPTCT 234
Query: 140 LRLEKNPWTE 149
+ LE NP +
Sbjct: 235 IILEDNPLSS 244
Score = 38.4 bits (89), Expect = 0.004
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 15/73 (20%)
Query: 81 ENLPDLFA----LNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSN 136
LP+L A L++ N+L L ++ ++ + +N + L E ++
Sbjct: 113 STLPELPASLKHLDVDNNQL------TMLPELPALLEYINADNNQLTMLP-----ELPTS 161
Query: 137 LEELRLEKNPWTE 149
LE L + N T
Sbjct: 162 LEVLSVRNNQLTF 174
Score = 37.3 bits (86), Expect = 0.009
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 17/70 (24%)
Query: 81 ENLPDLFA----LNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLS 135
LP+L A +N N+L PE SL ++L + +N + L E
Sbjct: 133 TMLPELPALLEYINADNNQLTMLPELPTSL-------EVLSVRNNQLTFLP-----ELPE 180
Query: 136 NLEELRLEKN 145
+LE L + N
Sbjct: 181 SLEALDVSTN 190
Score = 36.5 bits (84), Expect = 0.018
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 15/69 (21%)
Query: 81 ENLPDLFA----LNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSN 136
+LP+L A L+ +N+L +L ++ +K L + +N + L E +
Sbjct: 93 ISLPELPASLEYLDACDNRL------STLPELPASLKHLDVDNNQLTMLP-----ELPAL 141
Query: 137 LEELRLEKN 145
LE + + N
Sbjct: 142 LEYINADNN 150
Score = 33.8 bits (77), Expect = 0.10
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRL 142
P + L +++N L ISL ++ ++ L N + L E ++L+ L +
Sbjct: 79 PPQITVLEITQNAL------ISLPELPASLEYLDACDNRLSTL-----PELPASLKHLDV 127
Query: 143 EKNPWTE 149
+ N T
Sbjct: 128 DNNQLTM 134
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 38.8 bits (91), Expect = 0.001
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 81 ENLPDLFALNLSEN-KLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
LP + +++LS N + L +L P +K L + + + D R +E L +
Sbjct: 133 NTLPKVNSIDLSYNGAITDIMPLKTL----PELKSLNIQFDGVHD---YRGIEDFPKLNQ 185
Query: 140 LRLEKNP 146
L
Sbjct: 186 LYAFSQT 192
Score = 38.4 bits (90), Expect = 0.002
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 73 TSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLE 132
+S NI + L + L+ + L + +K L + + + + +
Sbjct: 33 SSTANITEAQMNSLTYITLANINV---TDLTGIEY-AHNIKDLTINNIHATN---YNPIS 85
Query: 133 SLSNLEELRLEKN 145
LSNLE LR+
Sbjct: 86 GLSNLERLRIMGK 98
Score = 36.9 bits (86), Expect = 0.005
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 81 ENLPDLFALNLSENKL--YYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
L +L L + + +L L + +L ++H+ D + + +L +
Sbjct: 85 SGLSNLERLRIMGKDVTSDKIPNLSGL----TSLTLLDISHSAHDDS-ILTKINTLPKVN 139
Query: 139 ELRLEKNP 146
+ L N
Sbjct: 140 SIDLSYNG 147
Score = 28.4 bits (64), Expect = 3.4
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 66 LDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDL 125
L + +T + + + LP+L +LN+ + + + P++ LY I
Sbjct: 143 LSYNGAITDIMPL--KTLPELKSLNIQFDGV---HDYRGIED-FPKLNQLYAFSQTIGGK 196
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 39.6 bits (93), Expect = 0.002
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDLA 126
+N + + + +NLP L A+ N L P+ +SL + + +N +++L
Sbjct: 181 GNNQLEELPEL--QNLPFLTAIYADNNSLKKLPDLPLSL-------ESIVAGNNILEELP 231
Query: 127 TIRTLESLSNLEELRLEKN 145
+ ++L L + + N
Sbjct: 232 EL---QNLPFLTTIYADNN 247
Score = 38.1 bits (89), Expect = 0.005
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 79 INENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
+ + P L LN+S NKL I L + PR++ L + N++ ++ E NL+
Sbjct: 312 LCDLPPSLEELNVSNNKL------IELPALPPRLERLIASFNHLAEVP-----ELPQNLK 360
Query: 139 ELRLEKNPWTE 149
+L +E NP E
Sbjct: 361 QLHVEYNPLRE 371
Score = 35.7 bits (83), Expect = 0.025
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 79 INENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
+ + P L + N+L L +L P + +Y +N++K L + +LE
Sbjct: 168 LPDLPPSLEFIAAGNNQLEELPELQNL----PFLTAIYADNNSLKKLP-----DLPLSLE 218
Query: 139 ELRLEKNPWTE 149
+ N E
Sbjct: 219 SIVAGNNILEE 229
Score = 33.8 bits (78), Expect = 0.10
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 77 NIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSN 136
+ ++E P+L+ LN S N++ SL + P ++ L +++N + +L
Sbjct: 290 SGLSELPPNLYYLNASSNEI------RSLCDLPPSLEELNVSNNKLIELP-----ALPPR 338
Query: 137 LEELRLEKN 145
LE L N
Sbjct: 339 LERLIASFN 347
Score = 33.8 bits (78), Expect = 0.11
Identities = 14/100 (14%), Positives = 37/100 (37%), Gaps = 18/100 (18%)
Query: 79 INENLPDLFALNLSENKLYY-PES------------LISLAKVIPRVKILYLAHNNIKDL 125
+ E +L L++ N L P+ L + ++ +K L++ N +++
Sbjct: 352 VPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF 411
Query: 126 ATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIF 165
+ ++E+LR+ + + T ++
Sbjct: 412 P-----DIPESVEDLRMNSERVVDPYEFAHETTDKLEDDV 446
Score = 32.7 bits (75), Expect = 0.25
Identities = 11/72 (15%), Positives = 31/72 (43%), Gaps = 12/72 (16%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELR 141
+L L N + L + + P ++ L +++N ++ L ++ + S L+ +
Sbjct: 112 SLKSLLVDNNNLKAL---------SDLPPLLEYLGVSNNQLEKLPELQ---NSSFLKIID 159
Query: 142 LEKNPWTECFNE 153
++ N + +
Sbjct: 160 VDNNSLKKLPDL 171
Score = 32.3 bits (74), Expect = 0.33
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 79 INENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
+ + L ++ N L L +L P + +Y +N +K L + +LE
Sbjct: 210 LPDLPLSLESIVAGNNILEELPELQNL----PFLTTIYADNNLLKTLP-----DLPPSLE 260
Query: 139 ELRLEKNPWTE 149
L + N T+
Sbjct: 261 ALNVRDNYLTD 271
Score = 31.9 bits (73), Expect = 0.39
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 77 NIINENLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLS 135
+ E +L L++ N L P+ S+ + L + + D E+
Sbjct: 389 AEVPELPQNLKQLHVETNPLREFPDIPESV-------EDLRMNSERVVDPYEF-AHETTD 440
Query: 136 NLEELRLEKN 145
LE+ E +
Sbjct: 441 KLEDDVFEHH 450
Score = 31.5 bits (72), Expect = 0.63
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 77 NIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSN 136
+ E L L++SEN L+++ P + L + N I+ L + +
Sbjct: 270 TDLPELPQSLTFLDVSEN------IFSGLSELPPNLYYLNASSNEIRSL-----CDLPPS 318
Query: 137 LEELRLEKN 145
LEEL + N
Sbjct: 319 LEELNVSNN 327
Score = 31.1 bits (71), Expect = 0.79
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L D E +L L SL ++ P ++ L + N++ +L +SL +L
Sbjct: 63 SRLRDCLDRQAHELELNN-LGLSSLPELPPHLESLVASCNSLTELP--ELPQSLKSLLVD 119
Query: 141 RLEKNPWTE 149
++
Sbjct: 120 NNNLKALSD 128
Score = 30.7 bits (70), Expect = 1.1
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 22/86 (25%)
Query: 79 INENLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDL-ATIRTLESL-- 134
+ P L L S N L PE +L K L++ +N +++ ++E L
Sbjct: 332 LPALPPRLERLIASFNHLAEVPELPQNL-------KQLHVEYNPLREFPDIPESVEDLRM 384
Query: 135 -----------SNLEELRLEKNPWTE 149
NL++L +E NP E
Sbjct: 385 NSHLAEVPELPQNLKQLHVETNPLRE 410
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 38.8 bits (91), Expect = 0.002
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVI----PRVKILYLAHNNIKDLATIRTLESLSNL 137
L L L E L SL +K L +AHN I+ +L+NL
Sbjct: 98 GLSSLQKLVAVETNL------ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 138 EELRLEKN 145
E L L N
Sbjct: 152 EHLDLSSN 159
Score = 38.4 bits (90), Expect = 0.003
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 82 NLPDLFA-LNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+P L L+LS N + + A R+K L L N +K + + L++L+++
Sbjct: 174 QMPLLNLSLDLSLNPM---NFIQPGAFKEIRLKELALDTNQLKSVPD-GIFDRLTSLQKI 229
Query: 141 RLEKNPW 147
L NPW
Sbjct: 230 WLHTNPW 236
Score = 32.2 bits (74), Expect = 0.25
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 13/70 (18%)
Query: 82 NLPDLFALNLSENKLYY-----PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSN 136
+ P+L L+LS ++ +SL L L L N I+ LA LS+
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHL-------STLILTGNPIQSLAL-GAFSGLSS 101
Query: 137 LEELRLEKNP 146
L++L +
Sbjct: 102 LQKLVAVETN 111
Score = 29.6 bits (67), Expect = 1.9
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 81 ENLP-DLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNL 137
+NLP L+LS N L + S S P +++L L+ I+ + +SLS+L
Sbjct: 24 DNLPFSTKNLDLSFNPLRHLGSYSFFSF----PELQVLDLSRCEIQTIED-GAYQSLSHL 78
Query: 138 EELRLEKNP 146
L L NP
Sbjct: 79 STLILTGNP 87
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 39.5 bits (92), Expect = 0.002
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 83 LPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRL 142
P + L+L NK+ +S+ + ++ L +A N +K + + L++L+++ L
Sbjct: 420 PPRIKVLDLHSNKI---KSIPKQVVKLEALQELNVASNQLKSV-PDGIFDRLTSLQKIWL 475
Query: 143 EKNPW 147
NPW
Sbjct: 476 HTNPW 480
Score = 37.5 bits (87), Expect = 0.008
Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 15/121 (12%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATI 128
+N++T +L +L L L N+L + + + ++ L ++ N++
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392
Query: 129 RTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDD-----IQLPPPIVFD 183
+L L + N T + + P +K+ D I+ P V
Sbjct: 393 GDCSWTKSLLSLNMSSN----------ILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVK 442
Query: 184 L 184
L
Sbjct: 443 L 443
Score = 37.2 bits (86), Expect = 0.009
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 81 ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
+ +L L+LS NKL ++L K L L+ N L + ++S L+
Sbjct: 66 KFNQELEYLDLSHNKLVKISCHPTVNL-------KHLDLSFNAFDALPICKEFGNMSQLK 118
Query: 139 ELRLEKN 145
L L
Sbjct: 119 FLGLSTT 125
Score = 34.1 bits (78), Expect = 0.094
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 82 NLPDLFALNLSENKLYYPESLISLA-KVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+L L L +S N++ + L K ++ L L+HN + + + NL+ L
Sbjct: 43 SLSKLRILIISHNRI---QYLDISVFKFNQELEYLDLSHNKLVKI----SCHPTVNLKHL 95
Query: 141 RLEKNPWT 148
L N +
Sbjct: 96 DLSFNAFD 103
Score = 29.8 bits (67), Expect = 1.9
Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 20/109 (18%)
Query: 82 NLPDLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDL-ATIRTLESLSNLE 138
+ L+ S N L E+ L ++ L L N +K+L + +L+
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHL----TELETLILQMNQLKELSKIAEMTTQMKSLQ 377
Query: 139 ELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLP----PPIVFD 183
+L + +N + + L + + +F
Sbjct: 378 QLDISQNSVSYDEKK---------GDCSWTKSLLSLNMSSNILTDTIFR 417
Score = 27.9 bits (62), Expect = 8.7
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 87 FALNLSENKLYYPESLISLAKVIPR-VKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145
F ++ S+N L + K + + IL ++ N I +L T + SLS L L + N
Sbjct: 3 FLVDRSKNGLI------HVPKDLSQKTTILNISQNYISELWT-SDILSLSKLRILIISHN 55
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 38.1 bits (89), Expect = 0.002
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 82 NLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
L L L L N++ +S I L V++L L N I +A ++L +L
Sbjct: 103 GLESLKTLMLRSNRITCVGNDSFIGL----SSVRLLSLYDNQITTVAP-GAFDTLHSLST 157
Query: 140 LRLEKNPWT-EC 150
L L NP+ C
Sbjct: 158 LNLLANPFNCNC 169
Score = 34.2 bits (79), Expect = 0.047
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 13/69 (18%)
Query: 82 NLPDLFALNLSENKLYYPE-----SLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSN 136
LP L +N S NK+ E + + L N ++++ + + L +
Sbjct: 55 KLPQLRKINFSNNKITDIEEGAFEGASGV-------NEILLTSNRLENVQH-KMFKGLES 106
Query: 137 LEELRLEKN 145
L+ L L N
Sbjct: 107 LKTLMLRSN 115
Score = 32.7 bits (75), Expect = 0.15
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 89 LNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145
L L+ N+ E+ K+ P+++ + ++N I D+ E S + E+ L N
Sbjct: 37 LRLNNNEFTVLEATGIFKKL-PQLRKINFSNNKITDIEE-GAFEGASGVNEILLTSN 91
Score = 27.3 bits (61), Expect = 7.9
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 104 SLAKV---IPR-VKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145
L K+ IP+ L L +N L + L L ++ N
Sbjct: 22 KLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN 67
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 38.1 bits (89), Expect = 0.003
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 19/74 (25%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPR--------VKILYLAHNNIKDLATIRTLES 133
L L L L+ NK+ + + +L L N ++ +A T
Sbjct: 102 GLFSLQLLLLNANKI----------NCLRVDAFQDLHNLNLLSLYDNKLQTIAK-GTFSP 150
Query: 134 LSNLEELRLEKNPW 147
L ++ + L +NP+
Sbjct: 151 LRAIQTMHLAQNPF 164
Score = 35.4 bits (82), Expect = 0.022
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 13/69 (18%)
Query: 82 NLPDLFALNLSENKLYY-PE----SLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSN 136
L ++LS N++ L SL L L N I +L E L +
Sbjct: 54 PYKKLRRIDLSNNQISELAPDAFQGLRSL-------NSLVLYGNKITELPK-SLFEGLFS 105
Query: 137 LEELRLEKN 145
L+ L L N
Sbjct: 106 LQLLLLNAN 114
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 38.2 bits (89), Expect = 0.004
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELR 141
LP L L+LS N+L +SL L + +P + +L ++ N + L L L L+EL
Sbjct: 75 TLPVLGTLDLSHNQL---QSLPLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELY 130
Query: 142 LEKN 145
L+ N
Sbjct: 131 LKGN 134
Score = 33.5 bits (77), Expect = 0.094
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATI 128
N++ + L LNL +L + + + +P + L L+HN ++ L
Sbjct: 40 ENLLYTFSLATLMPYTRLTQLNLDRAEL----TKLQVDGTLPVLGTLDLSHNQLQSLPL- 94
Query: 129 RTLESLSNLEELRLEKN 145
++L L L + N
Sbjct: 95 -LGQTLPALTVLDVSFN 110
Score = 32.8 bits (75), Expect = 0.21
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 13/69 (18%)
Query: 82 NLPDLFALNLSENKL-YYPE----SLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSN 136
LP L L++S N+L P L L + LYL N +K L L
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGEL-------QELYLKGNELKTLPP-GLLTPTPK 149
Query: 137 LEELRLEKN 145
LE+L L N
Sbjct: 150 LEKLSLANN 158
Score = 32.4 bits (74), Expect = 0.23
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 20/74 (27%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIP--------RVKILYLAHNNIKDLATIRTLES 133
P L L+L+ N L +P + L L N++ + +
Sbjct: 146 PTPKLEKLSLANNNL----------TELPAGLLNGLENLDTLLLQENSLYTIP--KGFFG 193
Query: 134 LSNLEELRLEKNPW 147
L L NPW
Sbjct: 194 SHLLPFAFLHGNPW 207
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 38.2 bits (88), Expect = 0.004
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 81 ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
L +L L + ++ L + P++ PR+ L L+ N ++ L+ +T++ LS L+
Sbjct: 53 RGLGELRNLTIVKSGLRFVAPDAFHFT----PRLSRLNLSFNALESLSW-KTVQGLS-LQ 106
Query: 139 ELRLEKNPWT 148
EL L NP
Sbjct: 107 ELVLSGNPLH 116
Score = 32.0 bits (72), Expect = 0.35
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 8/67 (11%)
Query: 82 NLPDLFALNLSENKLYY---PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
+L L + + L L ++ L + + ++ +A L
Sbjct: 29 GAENLTELYIENQQHLQHLELRDLRGL----GELRNLTIVKSGLRFVAP-DAFHFTPRLS 83
Query: 139 ELRLEKN 145
L L N
Sbjct: 84 RLNLSFN 90
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 38.3 bits (89), Expect = 0.004
Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 84 PDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLE 143
P + L+L N++ S+ + ++ L +A N +K + + L++L+ + L
Sbjct: 450 PKVKVLDLHNNRI---MSIPKDVTHLQALQELNVASNQLKSV-PDGVFDRLTSLQYIWLH 505
Query: 144 KNPW 147
NPW
Sbjct: 506 DNPW 509
Score = 33.7 bits (77), Expect = 0.12
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 81 ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
DL L++S N+L + SL + L L+ N+ L + +L+ L
Sbjct: 97 LFNQDLEYLDVSHNRLQNISCCPMASL-------RHLDLSFNDFDVLPVCKEFGNLTKLT 149
Query: 139 ELRLEKN 145
L L
Sbjct: 150 FLGLSAA 156
Score = 31.8 bits (72), Expect = 0.46
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 16/72 (22%)
Query: 82 NLPDLFALNLSENKLYY-PES----LISLAKVIPRVKILYLAHNNIKDLATIRTLESLSN 136
L +L L LS N++ L + L ++HN ++++ + +++
Sbjct: 74 FLSELRVLRLSHNRIRSLDFHVFLFNQDL-------EYLDVSHNRLQNI----SCCPMAS 122
Query: 137 LEELRLEKNPWT 148
L L L N +
Sbjct: 123 LRHLDLSFNDFD 134
Score = 31.8 bits (72), Expect = 0.52
Identities = 13/104 (12%), Positives = 30/104 (28%), Gaps = 13/104 (12%)
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLAT 127
+ L L ++ + + + V + I L+ ++ +
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY--SVFAEMNIKMLSISDTPFIHM 346
Query: 128 IRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKL 171
+ S S+ L +N +T V + L +L
Sbjct: 347 V-CPPSPSSFTFLNFTQN----------VFTDSVFQGCSTLKRL 379
Score = 28.3 bits (63), Expect = 6.1
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 104 SLAKV---IP-RVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145
+L V +P R K L L+ N+I +L + LS L LRL N
Sbjct: 42 NLTHVPKDLPPRTKALSLSQNSISELRM-PDISFLSELRVLRLSHN 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 37.6 bits (88), Expect = 0.007
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 85 DLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNI-----KDLATIRTLESLSNLEE 139
D+ +L++ +L L ++ + +++ L + KD+++ L L E
Sbjct: 4 DIQSLDIQCEELS-DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA--LRVNPALAE 60
Query: 140 LRLEKN 145
L L N
Sbjct: 61 LNLRSN 66
Score = 33.8 bits (78), Expect = 0.11
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 89 LNLSENKLYYPESLISLAKVI---PRVKILYLAHNNIKDLATIRTLESL----SNLEELR 141
L L++ + S SLA + ++ L L++N + D ++ +ES+ LE+L
Sbjct: 375 LWLADCDVS-DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 433
Query: 142 LEKNPWTE 149
L W+E
Sbjct: 434 LYDIYWSE 441
Score = 33.4 bits (77), Expect = 0.13
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 8/85 (9%)
Query: 72 MTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVI---PRVKILYLAHNNIKDLATI 128
+C + E L +L + + V+ + L +++N ++D
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFT-AACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359
Query: 129 RTLESL----SNLEELRLEKNPWTE 149
+ L S L L L ++
Sbjct: 360 ELCQGLGQPGSVLRVLWLADCDVSD 384
Score = 32.6 bits (75), Expect = 0.24
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVI----PRVKILYLAHNNI-----KDLATIRTL 131
P L LNL N+L + + + + +++ L L + + L+ TL
Sbjct: 53 RVNPALAELNLRSNEL-GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS--STL 109
Query: 132 ESLSNLEELRLEKN 145
+L L+EL L N
Sbjct: 110 RTLPTLQELHLSDN 123
Score = 32.6 bits (75), Expect = 0.28
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 72 MTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVI---PRVKILYLAHNNIKDLATI 128
M +C + L L + E + + L +V+ +K L LA N + D
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGIT-AKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302
Query: 129 RTLESLSN----LEELRLEKN 145
E+L LE L ++
Sbjct: 303 LLCETLLEPGCQLESLWVKSC 323
Score = 31.9 bits (73), Expect = 0.46
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 10/86 (11%)
Query: 72 MTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVI---PRVKILYLAHNNIKD---- 124
+ +C + ++ L AL L + ++ L ++ ++ L L N + D
Sbjct: 187 VRVLCQGLKDSPCQLEALKLESCGVT-SDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245
Query: 125 -LATIRTLESLSNLEELRLEKNPWTE 149
L L S L L + + T
Sbjct: 246 ELCPGL-LHPSSRLRTLWIWECGITA 270
Score = 30.7 bits (70), Expect = 1.1
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 72 MTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVI---PRVKILYLAHNNIKDLATI 128
+ +C + + L L L L S LA V+ P K L +++N+I +
Sbjct: 130 LQLLCEGLLDPQCRLEKLQLEYCSLS-AASCEPLASVLRAKPDFKELTVSNNDINEAGVR 188
Query: 129 RTLESLS----NLEELRLEKN 145
+ L LE L+LE
Sbjct: 189 VLCQGLKDSPCQLEALKLESC 209
Score = 28.8 bits (65), Expect = 4.1
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 12/67 (17%)
Query: 89 LNLSENKLYYPESLISLAKVI----PRVKILYLAHNNI-----KDLATIRTLESLSNLEE 139
L L NKL + L + R++ L++ I DL R L + +L+E
Sbjct: 232 LALGSNKLG-DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC--RVLRAKESLKE 288
Query: 140 LRLEKNP 146
L L N
Sbjct: 289 LSLAGNE 295
Score = 28.0 bits (63), Expect = 7.4
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 89 LNLSENKLYYPESLISLAKVI---PRVKILYLAHNNIKDLATIRTLESLSN----LEELR 141
+ L + L ++ + P + L L N + D+ L+ L +++L
Sbjct: 33 VRLDDCGLT-EARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLS 91
Query: 142 LEKN 145
L+
Sbjct: 92 LQNC 95
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 37.0 bits (86), Expect = 0.009
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 72 MTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTL 131
T V ++ L +NL+ +L P L +L V R + L L N++ + L
Sbjct: 89 CTVVAAVLGSGRHALDEVNLASCQLD-PAGLRTLLPVFLRARKLGLQLNSLGP-EACKDL 146
Query: 132 -----ESLSNLEELRLEKN 145
+ LRL N
Sbjct: 147 RDLLLHDQCQITTLRLSNN 165
Score = 30.8 bits (70), Expect = 0.92
Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 13/111 (11%)
Query: 86 LFALNLSENKLYYPESLISLAKVI---PRVKILYLAHNNIKD-----LA-TIRTLESLSN 136
L LN++ N + ++LA+ P +++L+L N + L E +
Sbjct: 213 LQELNVAYNGAG-DTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGAR 271
Query: 137 LEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLEDN 187
+ E +E SEV++ + + ++ DLED+
Sbjct: 272 VVVSLTEGTAVSE---YWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDS 319
Score = 30.5 bits (69), Expect = 1.2
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 72 MTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVI---PRVKILYLAHNNIKD---- 124
+ +++ + + L LS N L + L + + V L L H + D
Sbjct: 143 CKDLRDLLLHDQCQITTLRLSNNPLT-AAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE 201
Query: 125 -LATIRTLESLSNLEELRLEKN 145
LA L+ L+EL + N
Sbjct: 202 LLA--AQLDRNRQLQELNVAYN 221
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 37.2 bits (86), Expect = 0.012
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 10/72 (13%)
Query: 79 INENLPDLFALNLSENKL-YYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNL 137
+ +L L +S N+L P L L + N + L +L LS+
Sbjct: 236 LPVLPSELKELMVSGNRLTSLPMLPSGL-------LSLSVYRNQLTRLP--ESLIHLSSE 286
Query: 138 EELRLEKNPWTE 149
+ LE NP +E
Sbjct: 287 TTVNLEGNPLSE 298
Score = 36.0 bits (83), Expect = 0.026
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
P L L++S+N+L SL + + L+ +N + L S L+EL
Sbjct: 138 VLPPGLQELSVSDNQL------ASLPALPSELCKLWAYNNQLTSL-----PMLPSGLQEL 186
Query: 141 RLEKNPWTE 149
+ N
Sbjct: 187 SVSDNQLAS 195
Score = 34.9 bits (80), Expect = 0.054
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 81 ENLPDLFA----LNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSN 136
+LP L + L++S+N+L SL + + L+ +N + L S
Sbjct: 174 TSLPMLPSGLQELSVSDNQL------ASLPTLPSELYKLWAYNNRLTSLP-----ALPSG 222
Query: 137 LEELRLEKNP 146
L+EL + N
Sbjct: 223 LKELIVSGNR 232
Score = 32.9 bits (75), Expect = 0.25
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 8/66 (12%)
Query: 80 NENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
+ + L + +N +L SL + P ++ L ++ N + L L L
Sbjct: 57 DCLPAHITTLVIPDN------NLTSLPALPPELRTLEVSGNQLTSLPV--LPPGLLELSI 108
Query: 140 LRLEKN 145
Sbjct: 109 FSNPLT 114
Score = 32.6 bits (74), Expect = 0.29
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 11/67 (16%)
Query: 79 INENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
+ L L +S N+L SL + +K L ++ N + L S L
Sbjct: 216 LPALPSGLKELIVSGNRL------TSLPVLPSELKELMVSGNRLTSLP-----MLPSGLL 264
Query: 139 ELRLEKN 145
L + +N
Sbjct: 265 SLSVYRN 271
Score = 32.6 bits (74), Expect = 0.30
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 19/85 (22%)
Query: 79 INENLPDLFALNLSENKLYY-PESLISLAK-------------VIPRVKILYLAHNNIKD 124
+ P+L L +S N+L P L + + + L++ N +
Sbjct: 76 LPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS 135
Query: 125 LATIRTLESLSNLEELRLEKNPWTE 149
L L+EL + N
Sbjct: 136 LP-----VLPPGLQELSVSDNQLAS 155
Score = 31.8 bits (72), Expect = 0.45
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 11/65 (16%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+L+ L N+L SL + +K L ++ N + L S L+EL
Sbjct: 198 TLPSELYKLWAYNNRL------TSLPALPSGLKELIVSGNRLTSLP-----VLPSELKEL 246
Query: 141 RLEKN 145
+ N
Sbjct: 247 MVSGN 251
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 36.6 bits (85), Expect = 0.014
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 9/68 (13%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELR 141
L L+ S NK+ + + +++ + L NNI L L L L
Sbjct: 168 PQTQLTTLDCSFNKI----TELDVSQ-NKLLNRLNCDTNNITKL----DLNQNIQLTFLD 218
Query: 142 LEKNPWTE 149
N TE
Sbjct: 219 CSSNKLTE 226
Score = 34.7 bits (80), Expect = 0.056
Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 8/98 (8%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELR 141
P L L L+ +L + + ++ ++K L + +I+D +++ + L
Sbjct: 316 QNPKLVYLYLNNTEL----TELDVSH-NTKLKSLSCVNAHIQDFSSV---GKIPALNNNF 367
Query: 142 LEKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPP 179
+ E S + P LL +
Sbjct: 368 EAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIE 405
Score = 34.7 bits (80), Expect = 0.061
Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELR 141
+ L+ L+ + + + L++ P++ LYL + + +L + + L+ L
Sbjct: 295 HNTQLYLLDCQAAGI----TELDLSQ-NPKLVYLYLNNTELTEL----DVSHNTKLKSLS 345
Query: 142 LEKNPWTE 149
+
Sbjct: 346 CVNAHIQD 353
Score = 34.3 bits (79), Expect = 0.078
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 8/73 (10%)
Query: 77 NIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSN 136
I + L L+ NK + ++ L + N I +L +
Sbjct: 141 EIDVSHNTQLTELDCHLNKKITKLDVTPQ----TQLTTLDCSFNKITEL----DVSQNKL 192
Query: 137 LEELRLEKNPWTE 149
L L + N T+
Sbjct: 193 LNRLNCDTNNITK 205
Score = 33.1 bits (76), Expect = 0.17
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 80 NENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
++N A IS + + + L +++I D+ I E L+ L +
Sbjct: 17 DDNFASEVAAAFEMQAT----DTISEEQ-LATLTSLDCHNSSITDMTGI---EKLTGLTK 68
Query: 140 LRLEKN 145
L N
Sbjct: 69 LICTSN 74
Score = 31.2 bits (71), Expect = 0.73
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Query: 77 NIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSN 136
+ L L+ S NKL + I + + ++ + N + +L + +LS
Sbjct: 205 KLDLNQNIQLTFLDCSSNKL----TEIDVTPL-TQLTYFDCSVNPLTEL----DVSTLSK 255
Query: 137 LEELRLEKNP 146
L L +
Sbjct: 256 LTTLHCIQTD 265
Score = 30.8 bits (70), Expect = 1.0
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 9/68 (13%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELR 141
+L L NKL + + + + ++ L N + L + L L
Sbjct: 83 QNTNLTYLACDSNKL----TNLDVTP-LTKLTYLNCDTNKLTKL----DVSQNPLLTYLN 133
Query: 142 LEKNPWTE 149
+N TE
Sbjct: 134 CARNTLTE 141
Score = 30.8 bits (70), Expect = 1.0
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
E L L L + N + + + L++ + L N + +L + L+ L L
Sbjct: 61 EKLTGLTKLICTSNNI----TTLDLSQ-NTNLTYLACDSNKLTNL----DVTPLTKLTYL 111
Query: 141 RLEKN 145
+ N
Sbjct: 112 NCDTN 116
Score = 30.4 bits (69), Expect = 1.3
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 9/66 (13%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L LN N + + + L + ++ L + N + ++ + L+ L
Sbjct: 188 SQNKLLNRLNCDTNNI----TKLDLNQN-IQLTFLDCSSNKLTEI----DVTPLTQLTYF 238
Query: 141 RLEKNP 146
NP
Sbjct: 239 DCSVNP 244
Score = 28.1 bits (63), Expect = 6.3
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 77 NIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSN 136
N+ L L LN NKL + + +++ P + L A N + ++ + +
Sbjct: 99 NLDVTPLTKLTYLNCDTNKL----TKLDVSQ-NPLLTYLNCARNTLTEI----DVSHNTQ 149
Query: 137 LEELRLEKN 145
L EL N
Sbjct: 150 LTELDCHLN 158
Score = 27.7 bits (62), Expect = 7.7
Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 8/69 (11%)
Query: 77 NIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSN 136
+ L L L+ + L I L +++Y + + + + +
Sbjct: 247 ELDVSTLSKLTTLHCIQTDL----LEIDLTHNT---QLIYFQAEGCRKIKEL-DVTHNTQ 298
Query: 137 LEELRLEKN 145
L L +
Sbjct: 299 LYLLDCQAA 307
Score = 27.7 bits (62), Expect = 8.3
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 8/68 (11%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELR 141
P L LN + N L + I ++ ++ L N + + L L
Sbjct: 125 QNPLLTYLNCARNTL----TEIDVSH-NTQLTELDCHLNKKITKLDV---TPQTQLTTLD 176
Query: 142 LEKNPWTE 149
N TE
Sbjct: 177 CSFNKITE 184
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 35.1 bits (82), Expect = 0.019
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 9/66 (13%)
Query: 82 NLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDL-ATIRTLESLSNLEE 139
LP+ L +L ++ L + L + + +L A + L +
Sbjct: 71 ELPEKSKLQEIYQELTRLKAAVGELPE----KSKLQEIYQELTELKAAV---GELPEKSK 123
Query: 140 LRLEKN 145
L+
Sbjct: 124 LQEIYQ 129
Score = 34.7 bits (81), Expect = 0.023
Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 7/65 (10%)
Query: 82 NLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
LP+ L +L ++ L + L + + L + L +L
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGELPE----KSKLQEIYQELTRLKA--AVGELPEKSKL 55
Query: 141 RLEKN 145
+
Sbjct: 56 QEIYQ 60
Score = 34.4 bits (80), Expect = 0.031
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 9/70 (12%)
Query: 82 NLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDL-ATIRTLESLSNLEE 139
LP+ L +L ++ L P L + + L A + L +
Sbjct: 48 ELPEKSKLQEIYQELTRLKAAVGEL----PEKSKLQEIYQELTRLKAAV---GELPEKSK 100
Query: 140 LRLEKNPWTE 149
L+ TE
Sbjct: 101 LQEIYQELTE 110
Score = 33.6 bits (78), Expect = 0.051
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 9/67 (13%)
Query: 82 NLPDLFALNLSENKL-YYPESLISLAKVIPRVKILYLAHNNIKDL-ATIRTLESLSNLEE 139
LP+ L +L ++ L P L + + L A + L + +
Sbjct: 94 ELPEKSKLQEIYQELTELKAAVGEL----PEKSKLQEIYQELTQLKAAV---GELPDQSK 146
Query: 140 LRLEKNP 146
+
Sbjct: 147 QQQIYQE 153
Score = 29.0 bits (66), Expect = 1.9
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 5/45 (11%)
Query: 82 NLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDL 125
LP+ L +L ++ L P + + DL
Sbjct: 117 ELPEKSKLQEIYQELTQLKAAVGEL----PDQSKQQQIYQELTDL 157
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 35.6 bits (82), Expect = 0.026
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 82 NLPDLFALNLSENKLYYPESLISLA--KVIPRVKILYLAHNNIKDLATI--RTLESLSNL 137
P L L+LS+N LIS P +++L L + ++ + + + L
Sbjct: 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQL 230
Query: 138 EELRLEKN 145
+ L L N
Sbjct: 231 QGLDLSHN 238
Score = 34.9 bits (80), Expect = 0.048
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 78 IINENLPDLFALNLSENKLYYPESLI-SLAKVIPRVKILYLAHNNIKDLATIRTLESLSN 136
+ P L L L + P + +LA +++ L L+HN+++D A + + S
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254
Query: 137 LEELRLEKN 145
L L L
Sbjct: 255 LNSLNLSFT 263
Score = 34.1 bits (78), Expect = 0.070
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+ L +LNLS L + ++ +L L++N + + + L + L
Sbjct: 250 DWPSQLNSLNLSFTGLKQVPKGLP-----AKLSVLDLSYNRLDRNPSP---DELPQVGNL 301
Query: 141 RLEKNPWTE 149
L+ NP+ +
Sbjct: 302 SLKGNPFLD 310
Score = 32.6 bits (74), Expect = 0.25
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 77 NIINENLPDLFALNLSENKLYYPESLISL--AKVIPRVKILYLAHNNIKDLATIRTLESL 134
++ PDL LNL ++ ++ + P +K+L +A + + + +
Sbjct: 114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVRVF 172
Query: 135 SNLEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLD 172
L L L NP E+ ++ FP L L
Sbjct: 173 PALSTLDLSDNPEL---GERGLISALCPLKFPTLQVLA 207
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 35.3 bits (82), Expect = 0.038
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 79 INENLPDLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSN 136
++ L L+LS N Y P S ++ L L+ NN + TL +
Sbjct: 289 LSGACDTLTGLDLSGNHFYGAVPPFFGSC----SLLESLALSSNNFSGELPMDTLLKMRG 344
Query: 137 LEELRLEKN 145
L+ L L N
Sbjct: 345 LKVLDLSFN 353
Score = 34.1 bits (79), Expect = 0.11
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIK-DLATIRTLESLSNLEEL 140
+L L +L LS + + S + L L+ N++ + T+ +L S S L+ L
Sbjct: 75 SLTGLESLFLSNSHINGSVSGFKC---SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 131
Query: 141 RLEKN 145
+ N
Sbjct: 132 NVSSN 136
Score = 33.0 bits (76), Expect = 0.24
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 79 INENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
+++ +L L +S NK+ + +++ ++ L ++ NN I L S L+
Sbjct: 173 LSDGCGELKHLAISGNKI---SGDVDVSR-CVNLEFLDVSSNNFST--GIPFLGDCSALQ 226
Query: 139 ELRLEKN 145
L + N
Sbjct: 227 HLDISGN 233
Score = 32.6 bits (75), Expect = 0.27
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 82 NLPDLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATI-RTLESLSNLE 138
+L L L L N L P+ L+ + ++ L L N++ I L + +NL
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYV----KTLETLILDFNDLTG--EIPSGLSNCTNLN 493
Query: 139 ELRLEKN 145
+ L N
Sbjct: 494 WISLSNN 500
Score = 32.2 bits (74), Expect = 0.38
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 77 NIINENLPDLFALNLSENKL--YYPESLISLAKVIPRVKILYLAHNNIKDLATI-RTLES 133
N+ L L L N P +L + + L+L+ N + TI +L S
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNC----SELVSLHLSFNYLS--GTIPSSLGS 440
Query: 134 LSNLEELRLEKN 145
LS L +L+L N
Sbjct: 441 LSKLRDLKLWLN 452
Score = 31.8 bits (73), Expect = 0.49
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 82 NLPDLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
+ L L++S NKL + ++ + +K+L ++ N I L +L+
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTC----TELKLLNISSNQFVG--PI-PPLPLKSLQY 273
Query: 140 LRLEKN 145
L L +N
Sbjct: 274 LSLAEN 279
Score = 31.4 bits (72), Expect = 0.69
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 81 ENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATI-RTLESLSNL 137
L L L+L+ENK P+ L + L L+ N+ + S S L
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGA---CDTLTGLDLSGNHFYG--AVPPFFGSCSLL 320
Query: 138 EELRLEKN 145
E L L N
Sbjct: 321 ESLALSSN 328
Score = 31.0 bits (71), Expect = 0.89
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 82 NLPDLFALNLSENKLY----YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNL 137
L +L+LS N L SL S +K L ++ N + + L++L
Sbjct: 98 CSASLTSLDLSRNSLSGPVTTLTSLGSC----SGLKFLNVSSNTLDFPGKVSGGLKLNSL 153
Query: 138 EELRLEKN 145
E L L N
Sbjct: 154 EVLDLSAN 161
Score = 30.6 bits (70), Expect = 1.1
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 82 NLPDLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
L L L+LS N + + +K L ++ N I + + NLE
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDG-CGELKHLAISGNKISG--DV-DVSRCVNLEF 204
Query: 140 LRLEKN 145
L + N
Sbjct: 205 LDVSSN 210
Score = 30.3 bits (69), Expect = 1.5
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 82 NLPDLFALNLSENKL--YYPESLISLAKVIPRVKILYLAHNNI-----KDLATIRTLESL 134
+ L L+LS N+ PESL +L+ + L L+ NN +L
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLS---ASLLTLDLSSNNFSGPILPNLCQN----PK 393
Query: 135 SNLEELRLEKN 145
+ L+EL L+ N
Sbjct: 394 NTLQELYLQNN 404
Score = 30.3 bits (69), Expect = 1.6
Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 20/72 (27%)
Query: 82 NLPDLFALNLSENKLYYP---ESLISLAKVIPRVKILYLAHNNI-----KDLATIRTLES 133
+L LN+S N+ P L SL + L LA N L+ +
Sbjct: 245 TCTELKLLNISSNQFVGPIPPLPLKSL-------QYLSLAENKFTGEIPDFLSG-----A 292
Query: 134 LSNLEELRLEKN 145
L L L N
Sbjct: 293 CDTLTGLDLSGN 304
Score = 29.9 bits (68), Expect = 1.8
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 82 NLPDLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATI-RTLESLSNLE 138
N +L ++LS N+L P+ + L + IL L++N+ I L +L
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRL----ENLAILKLSNNSFSG--NIPAELGDCRSLI 541
Query: 139 ELRLEKN 145
L L N
Sbjct: 542 WLDLNTN 548
Score = 28.0 bits (63), Expect = 7.6
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 82 NLPDLFALNLSENKL--YYPESLISLAKVIPRVKILYLAHNNIKDLATI-RTLESLSNLE 138
N + L++S N L Y P+ + S+ P + IL L HN+I +I + L L
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSM----PYLFILNLGHNDISG--SIPDEVGDLRGLN 683
Query: 139 ELRLEKN 145
L L N
Sbjct: 684 ILDLSSN 690
>2ww5_A LYTC autolysin, 1,4-beta-N-acetylmuramidase; hydrolase,
glycosidase, choline-binding protein; 1.61A
{Streptococcus pneumoniae} PDB: 2wwd_A* 2wwc_A
Length = 468
Score = 35.1 bits (80), Expect = 0.048
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 19/92 (20%)
Query: 167 KLLKLDDIQLPPPIVFDLEDNIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGL 226
+L+K ++ L PI +D+E+ + K + + I+ ++ DT +AG
Sbjct: 347 ELIKKYNMNLSYPIYYDVENWEYVNKSKRAPSDTDTWVKIINKYM-------DTMKQAG- 398
Query: 227 IDAYHENAQYSLVVTQGLGNNHLLNNMLANSR 258
Y YS LL L +
Sbjct: 399 ---YQNVYVYS--------YRSLLQTRLKHPD 419
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 34.6 bits (80), Expect = 0.052
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 20/78 (25%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPR--------VKILYLAHNNIKDLATIRTLES 133
L L L L N+L K +P +K L L +N +K + +S
Sbjct: 155 KLTSLKELRLYNNQL----------KRVPEGAFDKLTELKTLKLDNNQLKRVPE-GAFDS 203
Query: 134 LSNLEELRLEKNPWT-EC 150
L L+ L+L++NPW C
Sbjct: 204 LEKLKMLQLQENPWDCTC 221
Score = 29.6 bits (67), Expect = 2.0
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKLYYPESL-----ISLAKVIPRVKILYLAHNNIK 123
N + ++ + + L +L L L N+L +SL SL K + L L +N ++
Sbjct: 94 DNKLQALPIGVFDQLVNLAELRLDRNQL---KSLPPRVFDSLTK----LTYLSLGYNELQ 146
Query: 124 DLATIRTLESLSNLEELRLEKN 145
L + L++L+ELRL N
Sbjct: 147 SLPK-GVFDKLTSLKELRLYNN 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 33.7 bits (77), Expect = 0.069
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 79 INENLPDLFALNLSENKLYYPESLISLAKVIPR---VKILYLAHNNIKDLATIRTLESL- 134
+ E+ DL +N++ K E + SL + ++ LA+ I D +E +
Sbjct: 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE 95
Query: 135 --SNLEELRLEKN 145
+L L +E N
Sbjct: 96 TSPSLRVLNVESN 108
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 34.1 bits (79), Expect = 0.077
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 77 NIINENLPDLFALNLSENKL-YYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLS 135
+ + P AL L L +P+ L+ ++ + + + +L T++ +
Sbjct: 74 LLEDATQPGRVALELRSVPLPQFPDQAFRLSH----LQHMTIDAAGLMELPD--TMQQFA 127
Query: 136 NLEELRLEKN 145
LE L L +N
Sbjct: 128 GLETLTLARN 137
Score = 33.8 bits (78), Expect = 0.094
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 13/73 (17%)
Query: 82 NLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNN--------IKDLATIRTLE 132
L L L+ N L P S+ SL ++ + L + + +
Sbjct: 125 QFAGLETLTLARNPLRALPASIASLNRL----RELSIRACPELTELPEPLASTDASGEHQ 180
Query: 133 SLSNLEELRLEKN 145
L NL+ LRLE
Sbjct: 181 GLVNLQSLRLEWT 193
Score = 31.8 bits (73), Expect = 0.35
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDLA 126
RS + + L L + + L P+++ A + + L LA N ++ L
Sbjct: 89 RSVPLPQFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGL----ETLTLARNPLRALP 143
Query: 127 TIRTLESLSNLEELRLEKNP 146
++ SL+ L EL + P
Sbjct: 144 --ASIASLNRLRELSIRACP 161
Score = 29.9 bits (68), Expect = 1.7
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 82 NLPDLFALNLSENKLYY-PESLISLAKVIPRVKILYLAHNNIKDLATI-RTLESLSNLEE 139
NL +L +L + + L ++ L K ++ L L L + L+
Sbjct: 204 NLQNLKSLKIRNSPLSALGPAIHHLPK----LEELDLRGCT--ALRNYPPIFGGRAPLKR 257
Query: 140 LRLEKN 145
L L+
Sbjct: 258 LILKDC 263
Score = 29.1 bits (66), Expect = 3.0
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 82 NLPDLFALNLSE-NKL-YYPESLISLAKVIPRVKILYLAHNNIKDLATI-RTLESLSNLE 138
+LP L L+L L YP A + K L L + +L T+ + L+ LE
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPL----KRLILKDCS--NLLTLPLDIHRLTQLE 280
Query: 139 ELRLEKNP 146
+L L
Sbjct: 281 KLDLRGCV 288
Score = 28.0 bits (63), Expect = 6.7
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 10/83 (12%)
Query: 66 LDRSNVMTSVCNIINENLPDLFALNLSE-NKLYY-PESLISLAKVIPRVKILYLAHNNIK 123
L + + I L L L + + L P + L ++ + L L
Sbjct: 236 LRGCTALRNYPPIF-GGRAPLKRLILKDCSNLLTLPLDIHRLTQL----EKLDLRGCV-- 288
Query: 124 DLATI-RTLESLSNLEELRLEKN 145
+L+ + + L + + +
Sbjct: 289 NLSRLPSLIAQLPANCIILVPPH 311
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 33.4 bits (77), Expect = 0.092
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 16/71 (22%)
Query: 83 LPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLES-----LS 135
P L L E L + +L P + +Y++ + T++ LES LS
Sbjct: 30 PPSTQTLKLIETHLRTIPSHAFSNL----PNISRIYVSIDV-----TLQQLESHSFYNLS 80
Query: 136 NLEELRLEKNP 146
+ + +
Sbjct: 81 KVTHIEIRNTR 91
Score = 33.1 bits (76), Expect = 0.14
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 82 NLPDLFALNLSENKLYYPESLISLA----KVIPRVKILYLAHNNIKDLATIRTLESLSNL 137
NL + + + + +L + K +P +K L + + +K + + S
Sbjct: 78 NLSKVTHIEIRNTR-----NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIF 132
Query: 138 EELRLEKNP 146
L + NP
Sbjct: 133 FILEITDNP 141
Score = 30.7 bits (70), Expect = 0.82
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Query: 82 NLPDLFALNLSEN-KLYY--PESLISLAKVIPRVKILYLAHNNIKDLATI--RTLESLSN 136
NLP++ + +S + L S +L +V + + + +L I L+ L
Sbjct: 53 NLPNISRIYVSIDVTLQQLESHSFYNL----SKVTHIEIRNTR--NLTYIDPDALKELPL 106
Query: 137 LEELRLEKN 145
L+ L +
Sbjct: 107 LKFLGIFNT 115
Score = 28.4 bits (64), Expect = 4.3
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELR 141
+ F L +++N + + + L L +N + + + L+ +
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG-YAF-NGTKLDAVY 185
Query: 142 LEKNPW 147
L KN +
Sbjct: 186 LNKNKY 191
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 33.9 bits (78), Expect = 0.097
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 89 LNLSENKLYYPESLISLAKVI----PRVKILYLAHNNIKDLAT---IRTLESLSNLEELR 141
L+LS N L +S LA + V L L N + + +SL +L+ +
Sbjct: 201 LDLSANLLG-LKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259
Query: 142 LEKNPWTECFNEQDAYTSEVRKIFPKLLKLD 172
L+ + EQ K++ +D
Sbjct: 260 LDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290
Score = 31.6 bits (72), Expect = 0.52
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 86 LFALNLSENKLYYPESLISLAKVIP----RVKILYLAHNNIKDLATIRTLESL----SNL 137
+ +LNLS N L +S L K + + +L L N+ ++ ++ +++
Sbjct: 82 VTSLNLSGNFLS-YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI 140
Query: 138 EELRLEKN 145
L L N
Sbjct: 141 TSLNLRGN 148
Score = 30.4 bits (69), Expect = 0.99
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 72 MTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIP----RVKILYLAHNNIKDLAT 127
+ + +LNLS N L ++ L +++ V L L+ N + ++
Sbjct: 39 TVELIQAFANTPASVTSLNLSGNSLG-FKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97
Query: 128 IRTLESL----SNLEELRLEKN 145
+++L + L L N
Sbjct: 98 DELVKTLAAIPFTITVLDLGWN 119
Score = 30.1 bits (68), Expect = 1.6
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 89 LNLSENKLYYPESLISLAKVIPRV----KILYLAHNNIKDLATIRTLESL----SNLEEL 140
L+L N +S + + L L N++ ++ ++ L +N+ L
Sbjct: 114 LDLGWNDFS-SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL 172
Query: 141 RLEKN 145
L N
Sbjct: 173 NLRGN 177
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 33.6 bits (77), Expect = 0.12
Identities = 14/101 (13%), Positives = 33/101 (32%), Gaps = 10/101 (9%)
Query: 57 FVEANMFVPLDR-------SNVMTSVCNIINENLPDLFALNLSEN-KLYYPESLISLAKV 108
++ F L + + + ++ + L++ +N ++ E S +
Sbjct: 94 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN-SFVGL 152
Query: 109 IPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149
IL+L N I+++ E + N E
Sbjct: 153 SFESVILWLNKNGIQEIHN-SAFNGTQLDELNLSDNNNLEE 192
Score = 32.1 bits (73), Expect = 0.34
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 12/87 (13%)
Query: 66 LDRSNVMTSVCNIINENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIK 123
L +N + + N + L++S +++ L +L +++ N+K
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL----KKLRARST--YNLK 237
Query: 124 DLATIRTLESLSNLEELRLEKNPWTEC 150
+ TLE L L E L P C
Sbjct: 238 ---KLPTLEKLVALMEASLT-YPSHCC 260
Score = 31.3 bits (71), Expect = 0.53
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 84 PDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELR 141
+ L KL + ++ + ++ N++ ++ +L L E+R
Sbjct: 30 RNAIELRFVLTKLRVIQKGAFSGF----GDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85
Query: 142 LEKN 145
+EK
Sbjct: 86 IEKA 89
Score = 30.6 bits (69), Expect = 0.95
Identities = 5/40 (12%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 110 PRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149
L ++ + +LE++ + +N E
Sbjct: 30 RNAIELRFVLTKLRVIQK-GAFSGFGDLEKIEISQNDVLE 68
Score = 30.6 bits (69), Expect = 1.1
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 66 LDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKV-IPRVKILYLAHNN-IK 123
++++N + + +NLP+L L +S + + L + K+ + +L + N I
Sbjct: 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGI---KHLPDVHKIHSLQKVLLDIQDNINIH 142
Query: 124 DLATIRTLESLS-NLEELRLEKN 145
+ + LS L L KN
Sbjct: 143 TIER-NSFVGLSFESVILWLNKN 164
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 32.9 bits (75), Expect = 0.18
Identities = 34/184 (18%), Positives = 62/184 (33%), Gaps = 14/184 (7%)
Query: 42 DNKALDLSKFYADPDFVEANMFVPLD-RSNVMTSVCNIINENLPDLFALNL-SENKLYYP 99
D LSKF D D + P D R+ + I N+ +AL++ K
Sbjct: 88 DPNGDMLSKFGRDKDII----LNPYDQRTKGWSFFNEIRNDYDWQRYALSVVPRGKTDEA 143
Query: 100 ESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELR-LEKNPWTECFNEQDAYT 158
E S +++ R LA + + +++ ++LR + E
Sbjct: 144 EEWASYGRLLLRETAKKLALIGTPSMRELFHWTTIATFDDLRGFLEGTLAESLFAGSNEA 203
Query: 159 SEVRK--IFPKLLKLDDIQLPPPIVFDLEDNIELPKPQGSFLCHPEARD-----ILRAFL 211
S+ F KL + P F + +E P F+ E ++ A++
Sbjct: 204 SKALTSARFVLSDKLPEHVTMPDGDFSIRSWLEDPNGGNLFITWREDMGPALRPLISAWV 263
Query: 212 EQYF 215
+
Sbjct: 264 DVVC 267
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 32.3 bits (74), Expect = 0.20
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVI---PRVKILYLAHNNIKD- 124
++V ++ I N + PDL +NL+ +L + A+ + VK + D
Sbjct: 22 TDVEETLKRIQNND-PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP 80
Query: 125 --LATIRTLESLSNLEELRLEKN 145
A L+ + L+ L +E N
Sbjct: 81 VAFALAEMLKVNNTLKSLNVESN 103
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 32.5 bits (74), Expect = 0.21
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 74 SVCNIINENLPDLFALNLSE-NKLYYPESLISLAKVIPRVKILYLAH-NNIKDLATIRTL 131
V + + LNLS K L +L + P + L L+ +K+ +
Sbjct: 185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEF 243
Query: 132 ESLSNLEELRL 142
L+ L+ L L
Sbjct: 244 FQLNYLQHLSL 254
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.23
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 17/34 (50%)
Query: 95 KLYYPESLISLAKVIPRVKILYLAHNNIKDLATI 128
KLY +S +LA IK AT+
Sbjct: 30 KLYADDSAPALA---------------IK--ATM 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 32.1 bits (74), Expect = 0.28
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 27/88 (30%)
Query: 82 NLPDLFALNLSENKL--YYPESLISLAKVIPRVKILYLAHNNIK----------DLATI- 128
+LP+L + N++ P+S S +K+ + ++ N + +LA +
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFT---SMTISRNRLTGKIPPTFANLNLAFVD 203
Query: 129 -----------RTLESLSNLEELRLEKN 145
S N +++ L KN
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Score = 30.6 bits (70), Expect = 0.87
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 82 NLPDLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATI-RTLESLSNLE 138
L L L ++ + P+ L + + L ++N + T+ ++ SL NL
Sbjct: 99 KLTQLHYLYITHTNVSGAIPDFLSQI----KTLVTLDFSYNALS--GTLPPSISSLPNLV 152
Query: 139 ELRLEKN 145
+ + N
Sbjct: 153 GITFDGN 159
Score = 29.8 bits (68), Expect = 1.7
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 14/69 (20%)
Query: 82 NLPDLFALNLSENKLYYP----ESLISLAKVIPRVKILYLAHNNIKDLATI-RTLESLSN 136
+ + ++L++N L + +L L L +N I T+ + L L
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNL-------NGLDLRNNRIY--GTLPQGLTQLKF 269
Query: 137 LEELRLEKN 145
L L + N
Sbjct: 270 LHSLNVSFN 278
Score = 29.4 bits (67), Expect = 2.5
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 8/68 (11%)
Query: 81 ENLPDLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
+L L+L N++Y P+ L L + L ++ NN+ I +L +
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQL----KFLHSLNVSFNNLCG--EIPQGGNLQRFD 294
Query: 139 ELRLEKNP 146
N
Sbjct: 295 VSAYANNK 302
Score = 28.7 bits (65), Expect = 3.7
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Query: 82 NLPDLFALNLSENKLY--YPESLISLAKVIPRVKILYLAHNNIKDLATI-RTLESLSNL- 137
+ L L+ S N L P S+ SL P + + N I I + S S L
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSL----PNLVGITFDGNRISG--AIPDSYGSFSKLF 176
Query: 138 EELRLEKN 145
+ + +N
Sbjct: 177 TSMTISRN 184
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 31.5 bits (71), Expect = 0.66
Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 8/103 (7%)
Query: 74 SVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLES 133
+ + DL L L + + + L+S+ ++K L + ++ + + L
Sbjct: 128 DLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEK-DGKWLHE 186
Query: 134 LS----NLEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLD 172
L+ +LE L TE + + L+ +
Sbjct: 187 LAQHNTSLEVLNFY---MTEFAKISPKDLETIARNCRSLVSVK 226
Score = 29.5 bits (66), Expect = 2.3
Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 79 INENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
I + P++ + L E L+ ++ P ++ L + + A + L +L
Sbjct: 458 IGQYSPNVRWMLLGYVGES-DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR 516
Query: 139 ELRLEK 144
L ++
Sbjct: 517 YLWVQG 522
Score = 29.5 bits (66), Expect = 2.5
Identities = 11/61 (18%), Positives = 20/61 (32%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELR 141
NL L P + L +++ L L + ++ ++ NLE L
Sbjct: 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE 324
Query: 142 L 142
Sbjct: 325 T 325
Score = 28.4 bits (63), Expect = 6.4
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 100 ESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRL 142
LI+LA+ ++ + + ++I + + L NL + RL
Sbjct: 368 RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRL 410
Score = 28.0 bits (62), Expect = 6.9
Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
Query: 44 KALDLSKFYADPDFVEANMFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYYPESLI 103
++L L F +P + +T I+ NL L +++ + L
Sbjct: 76 RSLKLKGKPRAAMFN----LIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIV-SDLDLD 130
Query: 104 SLAKVI-PRVKILYLAH-NNIKDLATIRTLESLSNLEELRLEKNPWTE 149
LAK ++ L L + + + ++ L +E++ ++E
Sbjct: 131 RLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSE 178
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 30.8 bits (70), Expect = 0.91
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 11/76 (14%)
Query: 81 ENLPDLFALNLSENKL-----YYPESLISLAKVI---PRVKILYLAHNNIKD---LATIR 129
+ DL S+ PE+L L + + P++ + L+ N I
Sbjct: 57 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID 116
Query: 130 TLESLSNLEELRLEKN 145
L + LE L L N
Sbjct: 117 FLSKHTPLEHLYLHNN 132
Score = 30.8 bits (70), Expect = 0.96
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVI---PRVKILYLAHNNIKD---LATIRTLESL 134
+L L+L +N +LA + P ++ L L + A + L
Sbjct: 213 AYCQELKVLDLQDNTFT-HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271
Query: 135 SN--LEELRLEKNPWTE 149
N L+ LRL+ N
Sbjct: 272 ENIGLQTLRLQYNEIEL 288
Score = 28.9 bits (65), Expect = 3.5
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 86 LFALNLSENKLYYPESLISLAKVI---PRVKILYLAHNNIKDLATI---RTLESLSNLEE 139
+ +L + + E S+ V+ VK + L+ N I A + S +LE
Sbjct: 6 IEGKSLKLDAIT-TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64
Query: 140 LRLEKN 145
Sbjct: 65 AEFSDI 70
Score = 28.1 bits (63), Expect = 6.2
Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 16/72 (22%)
Query: 89 LNLSENKLYYPESLISLAKVI------------PRVKILYLAHNNIKDLATI---RTLES 133
L L N L P++ +A+ + P ++ + N +++ + +T +S
Sbjct: 127 LYLHNNGLG-PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185
Query: 134 LSNLEELRLEKN 145
L +++ +N
Sbjct: 186 HRLLHTVKMVQN 197
Score = 27.4 bits (61), Expect = 9.5
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 16/75 (21%)
Query: 86 LFALNLSENKLYYPESLISLAKVI---PRVKILYLAHNNIKD------------LATIRT 130
L + LS+N P + L + ++ LYL +N + LA +
Sbjct: 96 LHTVRLSDNAFG-PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK 154
Query: 131 LESLSNLEELRLEKN 145
++ L + +N
Sbjct: 155 AKNAPPLRSIICGRN 169
>1ohp_A Steroid delta-isomerase; inhibitor; HET: ESR; 1.53A {Pseudomonas
testosteroni} SCOP: d.17.4.3 PDB: 1qjg_A* 8cho_A*
1ohs_A* 1ocv_A 1isk_A 3nuv_A* 1ogz_A* 3nhx_A* 3m8c_A*
3nxj_A* 3myt_A* 3mki_A 3mhe_A 1buq_A* 3nbr_A* 3t8u_A
3ov4_A* 3nm2_A
Length = 125
Score = 29.3 bits (65), Expect = 0.96
Identities = 5/33 (15%), Positives = 16/33 (48%)
Query: 204 RDILRAFLEQYFALFDTESRAGLIDAYHENAQY 236
+ + A +++Y A + G++ + ++A
Sbjct: 4 PEHMTAVVQRYVAALNAGDLDGIVALFADDATV 36
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 30.6 bits (69), Expect = 1.1
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 79 INENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
I E+ DL L+LS L + + ++++L +A DL L +L
Sbjct: 427 IVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLR 484
Query: 139 ELRLEKNPWT 148
+L + P+
Sbjct: 485 KLEIRDCPFG 494
Score = 29.1 bits (65), Expect = 3.5
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 4/95 (4%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELR 141
+ + N + L+S++ P+++ + + + A I + N+ R
Sbjct: 344 RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFR 403
Query: 142 L----EKNPWTECFNEQDAYTSEVRKIFPKLLKLD 172
L K P D + + L +L
Sbjct: 404 LCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS 438
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia
coli} SCOP: d.151.1.1
Length = 268
Score = 30.2 bits (69), Expect = 1.3
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 16/62 (25%)
Query: 181 VFDLEDNIELPKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAY-----HENAQ 235
+ E+N + G PE R+ + + GL+D + +
Sbjct: 161 IGIGEENRKRWLRTGKCSFLPEEREWMDRLMSW-----------GLVDTFRHANPQTADR 209
Query: 236 YS 237
+S
Sbjct: 210 FS 211
>1oh0_A Steroid delta-isomerase; ketosteroid isomerase, KSI, equilenin, PI,
LBHB; HET: EQU; 1.1A {Pseudomonas putida} SCOP: d.17.4.3
PDB: 1e3v_A* 1opy_A 1dmq_A 1dmm_A 1ea2_A 3cpo_A 1e3r_A*
1ogx_A 2inx_A 2pzv_A 1c7h_A 1dmn_A 1k41_A 1oho_A*
3fzw_A* 1cqs_A* 1w00_A 1e97_A 1w6y_A* 3ipt_A* ...
Length = 131
Score = 29.2 bits (65), Expect = 1.5
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 207 LRAFLEQYFALFDTESRAGLIDAYHENAQY 236
++ + +Y L D ++ Y ++A
Sbjct: 9 VQGLMARYIELVDVGDIEAIVQMYADDATV 38
>3eby_A Beta subunit of A putative aromatic-ring-hydroxyl dioxygenase;
YP_001165631.1; 1.75A {Novosphingobium aromaticivorans
dsm 12ORGANISM_TAXID} SCOP: d.17.4.4
Length = 163
Score = 29.2 bits (65), Expect = 1.9
Identities = 9/62 (14%), Positives = 22/62 (35%)
Query: 201 PEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNL 260
A+ + F Y D + + ++ Y ++ + + N M +S+ +
Sbjct: 10 QVAQSAIDDFNAAYGLCLDDDRLEQWPTLFVDDCLYQVIARENVDNGLPAAVMYCDSKGM 69
Query: 261 LR 262
L
Sbjct: 70 LA 71
>3g9k_L Capsule biosynthesis protein CAPD; CAPD protein, the great lakes
regional C excellence, GLRCE, capsule
biogenesis/degradation; HET: GLU; 1.79A {Bacillus
anthracis} PDB: 3ga9_L*
Length = 323
Score = 29.5 bits (67), Expect = 2.1
Identities = 5/22 (22%), Positives = 10/22 (45%), Gaps = 4/22 (18%)
Query: 47 DLSKFYADPDFVEANMFVPLDR 68
D K DP++V + ++
Sbjct: 281 DRKKNLGDPNYVN----MDPNK 298
>2qmc_A GGT, gamma-glutamyltranspeptidase; NTN-hydrolase, transferase; HET:
GTB; 1.55A {Helicobacter pylori} PDB: 2qm6_A* 3fnm_A*
2nqo_A
Length = 377
Score = 29.1 bits (66), Expect = 2.7
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
Query: 47 DLSKFYADPDFVEANMFVPLDR 68
D S + D DFV VP+D+
Sbjct: 323 DRSVYMGDADFVS----VPVDK 340
>2v36_A Gamma-glutamyltranspeptidase large chain; transferase, glutathione
biosynthesis, gamma-glutamyl transferase,
acyltransferase, zymogen; 1.85A {Bacillus subtilis} PDB:
3a75_A*
Length = 376
Score = 29.1 bits (66), Expect = 2.8
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 4/22 (18%)
Query: 47 DLSKFYADPDFVEANMFVPLDR 68
D + + DP+FV VPL
Sbjct: 308 DRASYAGDPEFVN----VPLKG 325
>2dg5_A Gamma-glutamyltranspeptidase; gamma-glutamyltransferase, GGT,
gamma-GT, glutathione; HET: GLU; 1.60A {Escherichia coli
K12} SCOP: d.153.1.6 PDB: 2dbu_A 2dbw_A* 2dbx_A* 2e0x_A
2e0y_A 2z8i_A* 2z8j_A* 2z8k_A*
Length = 366
Score = 29.0 bits (66), Expect = 2.9
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 4/22 (18%)
Query: 47 DLSKFYADPDFVEANMFVPLDR 68
D S++ DPDFV+ VP
Sbjct: 312 DRSEYLGDPDFVK----VPWQA 329
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 28.4 bits (64), Expect = 3.0
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 23/77 (29%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIP--------RVKILYLAHNNIKDLATI--RT 130
E + L L ENK+ K I ++K L L N I + +
Sbjct: 75 EGASHIQELQLGENKI----------KEISNKMFLGLHQLKTLNLYDNQIS---CVMPGS 121
Query: 131 LESLSNLEELRLEKNPW 147
E L++L L L NP+
Sbjct: 122 FEHLNSLTSLNLASNPF 138
Score = 28.0 bits (63), Expect = 4.3
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 104 SLAKV---IPR-VKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145
L ++ IP L L N + +++ L +L +L L++N
Sbjct: 19 GLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN 64
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 28.5 bits (64), Expect = 3.1
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 13/83 (15%)
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYY-----PESLISLAKVIPRVKILYLAHNNI 122
+N + S+ N + + L L L L NKL L SL L L+ N +
Sbjct: 36 ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL-------TYLNLSTNQL 88
Query: 123 KDLATIRTLESLSNLEELRLEKN 145
+ L + L+ L+EL L N
Sbjct: 89 QSLPN-GVFDKLTQLKELALNTN 110
>3p16_A DNA polymerase III subunit beta; DNA polymerase III sliding clamp,
transferase; HET: DNA; 2.89A {Mycobacterium
tuberculosis} PDB: 3rb9_A*
Length = 408
Score = 29.2 bits (66), Expect = 3.2
Identities = 5/42 (11%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 326 NKSKLIRAFNRAFLLVPRSGG-GFAITNDQLFITSATPEQAE 366
+ ++LI A L+ R + + +++ +
Sbjct: 282 DVAELIEAIKLVALVADRGAQVRMEFADGSVRLSAGADDVGR 323
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 28.5 bits (64), Expect = 4.0
Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 29/116 (25%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPR--------VKILYLAHN 120
+N + S+ + ++L L L L N+L K +P +K L L N
Sbjct: 92 NNQLASLPLGVFDHLTQLDKLYLGGNQL----------KSLPSGVFDRLTKLKELRLNTN 141
Query: 121 NIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQL 176
++ + + L+NL+ L L N S F +L KL I L
Sbjct: 142 QLQSIPA-GAFDKLTNLQTLSLSTN----------QLQSVPHGAFDRLGKLQTITL 186
>3qqw_A Putative citrate lyase; TIM beta/alpha-barrel, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative; HET: MSE; 2.44A {Ralstonia
eutropha}
Length = 332
Score = 28.5 bits (64), Expect = 4.4
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 10/51 (19%)
Query: 163 KIFPKLLKLD-DIQLPPPIVFDLEDNIELP-KPQGSFLCHPEARDILRAFL 211
K+ K + L + + D ED + E +++ +
Sbjct: 33 KLIGKAMDLQVEYGPVFDVTCDCEDGAAAGQE--------REHAEMVARMI 75
>1m0w_A Glutathione synthetase; amine/carboxylate ligase, structural
genomics, PSI, protein structure initiative; HET: ANP
3GC; 1.80A {Saccharomyces cerevisiae} SCOP: c.30.1.4
d.142.1.6 PDB: 1m0t_A*
Length = 491
Score = 28.6 bits (63), Expect = 4.7
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 149 ECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFDLEDNIE--LPKPQGSFLCHPEARDI 206
+ S + K F K+ LDD +L + KPQ + ++
Sbjct: 337 GKYISDAEKKSSLLKTFVKIYPLDDTKLGREGKRLALSEPSKYVLKPQREGGGNNVYKEN 396
Query: 207 LRAFLEQ 213
+ FL+
Sbjct: 397 IPNFLKG 403
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 27.7 bits (62), Expect = 6.6
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYY-----PESLISLAKVIPRVKILYLAHNNI 122
N + S+ N + + L +L L L EN+L + L +L L LAHN +
Sbjct: 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL-------TYLNLAHNQL 145
Query: 123 KDLATIRTLESLSNLEELRLEKN 145
+ L + L+NL EL L N
Sbjct: 146 QSLPK-GVFDKLTNLTELDLSYN 167
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex;
3.19A {Vanderwaltozyma polyspora}
Length = 1046
Score = 28.1 bits (61), Expect = 8.4
Identities = 24/209 (11%), Positives = 54/209 (25%), Gaps = 18/209 (8%)
Query: 1 RIKTVTNHTLIVLVSSATPYVELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEA 60
+K + + TP K + R + + +F ++
Sbjct: 358 GLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFT---RESAVSM-----RFNVLESSLKK 409
Query: 61 NMFVPLDRSNVMTSVCNI------INENLPDLFALNLSENKLYYPESLISLAKVIPRVKI 114
N + + + + I PD+ +NL P +++
Sbjct: 410 NSAPKPNEKPININTIDYFKRKYDITLKYPDMKLVNLGGKNDVVPPECLTIVPGQKLKGQ 469
Query: 115 LYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSE-VRKIFPKLLKLDD 173
++ I + IR E + L + + + S + +++
Sbjct: 470 IFDTKTYID-FSAIRPTEKFDLISRLSMPAI--KRGLTDSEKEESSAPHNSAYQFMRVPS 526
Query: 174 IQLPPPIVFDLEDNIELPKPQGSFLCHPE 202
L P+V E E
Sbjct: 527 RILDAPVVQFKESTFEYKDKSYGTKHEES 555
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.383
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,489,418
Number of extensions: 385420
Number of successful extensions: 2585
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1585
Number of HSP's successfully gapped: 506
Length of query: 442
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 345
Effective length of database: 3,993,456
Effective search space: 1377742320
Effective search space used: 1377742320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)