RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1142
(442 letters)
>d1jkgb_ d.17.4.2 (B:) NTF2-like domain of Tip associating protein,
TAP {Human (Homo sapiens) [TaxId: 9606]}
Length = 186
Score = 177 bits (451), Expect = 2e-54
Identities = 61/182 (33%), Positives = 105/182 (57%), Gaps = 5/182 (2%)
Query: 191 PKPQGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHL- 249
P +GS+ + ++ FL+QY+A++D+ R GL+DAYH+ A SL + N
Sbjct: 2 PPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARS 61
Query: 250 -LNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGL 308
L +SRN+ ++++P + LL + +++ L LP T+HD+ SF D T L
Sbjct: 62 SLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTL 121
Query: 309 IQFSVCGLYEEITTGTKNKSKLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQAEKA 368
+ FSV G+++E+ +++ +RAF R F+ VP S G I ND+LF+ +A+ E+ ++A
Sbjct: 122 LCFSVNGVFKEVDGKSRD---SLRAFTRTFIAVPASNSGLCIVNDELFVRNASSEEIQRA 178
Query: 369 FS 370
F+
Sbjct: 179 FA 180
>d1of5a_ d.17.4.2 (A:) NTF2-like domain of mRNA export factor MEX67
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 221
Score = 139 bits (351), Expect = 2e-39
Identities = 39/220 (17%), Positives = 78/220 (35%), Gaps = 41/220 (18%)
Query: 194 QGSFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHL---- 249
Q F + F + L+D R L++ Y +Q+S+ V + + +
Sbjct: 1 QQFFFENDALGQSSTDFATNFLNLWDNN-REQLLNLYSPQSQFSVSVDSTIPPSTVTDSD 59
Query: 250 ----LNNMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLL----SFTCDC 301
+++SRN+ ++ + + LS+G+ I + LP TKH L ++ +
Sbjct: 60 QTPAFGYYMSSSRNISKVSSEKSIQQRLSIGQESINSIFKTLPKTKHHLQEQPNEYSMET 119
Query: 302 -PLYTPGLIQFSVCGLYEEITTG-------------------------TKNKSKLIRAFN 335
++ G +EE T N ++F+
Sbjct: 120 ISYPQINGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHGYNSTSNNKLSKKSFD 179
Query: 336 RAFLLVPRSGGGFAITNDQLFITSATPEQAEKAFSSQVTA 375
R +++VP I +D L + + + A K S +
Sbjct: 180 RTWVIVP-MNNSVIIASDLLTVRAYSTG-AWKTASIAIAQ 217
>d1q40b_ d.17.4.2 (B:) NTF2-like domain of mRNA export factor MEX67
{Yeast (Candida albicans) [TaxId: 5476]}
Length = 205
Score = 131 bits (331), Expect = 1e-36
Identities = 44/205 (21%), Positives = 85/205 (41%), Gaps = 41/205 (20%)
Query: 203 ARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVV-----------TQGLGNNHLLN 251
+R++ F+ Y L+D R+ L+ Y +Q+S+ V G +
Sbjct: 1 SRNLATNFIANYLKLWDAN-RSELMILYQNESQFSMQVDSSHPHLIESGNSGYSGSTDFG 59
Query: 252 NMLANSRNLLRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLS----FTCDCPLY-TP 306
L NSRNL R+ + + + LS+G+ I ++ + LP T+HD+++ F+ + + T
Sbjct: 60 YYLNNSRNLTRVSSIKARMAKLSIGQEQIYKSFQQLPKTRHDIIATPELFSMEVYKFPTL 119
Query: 307 GLIQFSVCGLYEEITT------------------------GTKNKSKLIRAFNRAFLLVP 342
I ++ G ++E+ K ++F+R F+++P
Sbjct: 120 NGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRYHSGPKHKRIPLSKKSFDRTFVVIP 179
Query: 343 RSGGGFAITNDQLFITSATPEQAEK 367
G + +D L I T + K
Sbjct: 180 GPNGSMIVASDTLLIRPYTSDFPWK 204
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 113 bits (284), Expect = 1e-30
Identities = 68/161 (42%), Positives = 100/161 (62%), Gaps = 1/161 (0%)
Query: 22 ELNNEIKDKIKLVMAKRYNGDNKALDLSKFYADPDFVEANMFVPLDRSNVMTSVCNIINE 81
EL E +++KL+M+KRY+G +ALDL +DPD V N+ V L+R + M + II E
Sbjct: 3 ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEE 62
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELR 141
N+P+L +LNLS N+LY + + S+ + P +KIL L+ N +K + LEEL
Sbjct: 63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL-DKIKGLKLEELW 121
Query: 142 LEKNPWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVF 182
L+ N ++ F +Q Y S +R+ FPKLL+LD +LPPPI F
Sbjct: 122 LDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAF 162
>d1oaia_ a.5.2.3 (A:) FG-binding, C-terminal domain of TAP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 75.9 bits (187), Expect = 4e-18
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 383 PVSNEILIKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIFNQLKAKNALPSEAFI 442
P + +Q M++A S SGMNL +S+KCL + WDY ++ F LKAK +P AF+
Sbjct: 1 PTLSPE--QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAFM 58
>d2qiya1 d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 139
Score = 65.5 bits (159), Expect = 1e-13
Identities = 29/156 (18%), Positives = 50/156 (32%), Gaps = 29/156 (18%)
Query: 203 ARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLR 262
+DI AFL+ Y+ T + L Y A+ + N ++
Sbjct: 3 VQDICFAFLQNYYERMRT-DPSKLAYFYASTAELTHT----------------NYQSKST 45
Query: 263 IEEPQRQKSLLSVGKADILRALRFLPA----TKHDLLSFTCDCPLYTPGLIQFSVCGLYE 318
E+ ++ G+ +I + A K L + + I G
Sbjct: 46 NEKDDVLPTVKVTGRENINKFFSRNDAKVRSLKLKLDTIDFQYTGHLHKSILIMATGEM- 104
Query: 319 EITTGTKNKSKLIRAFNRAFLLVP-RSGGGFAITND 353
+ F + F+L+P +G F ITND
Sbjct: 105 ------FWTGTPVYKFCQTFILLPSSNGSTFDITND 134
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 47.4 bits (112), Expect = 2e-07
Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 25/122 (20%)
Query: 69 SNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRV---------------- 112
+T +C++ E L + L+LS N+L ++ + + +
Sbjct: 7 HKDLTVLCHL--EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANL 64
Query: 113 ---KILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIFPKLL 169
+ L L +N ++ A I+ L S L L L+ N +++ + ++ P +
Sbjct: 65 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC----QEEGIQERLAEMLPSVS 120
Query: 170 KL 171
+
Sbjct: 121 SI 122
Score = 31.6 bits (71), Expect = 0.060
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 113 KILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNE 153
++L+LAH ++ L LE L + L L N
Sbjct: 1 RVLHLAHKDLTVLC---HLEQLLLVTHLDLSHNRLRALPPA 38
>d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 125
Score = 43.7 bits (103), Expect = 4e-06
Identities = 35/153 (22%), Positives = 45/153 (29%), Gaps = 40/153 (26%)
Query: 201 PEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNL 260
P I +F++ Y+ LFD R L Y + +
Sbjct: 3 PIWEQIGSSFIQHYYQLFDN-DRTQLGAIYIDASC------------------------- 36
Query: 261 LRIEEPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEI 320
L E Q Q GKA I+ L LP K D I V G
Sbjct: 37 LTWEGQQFQ------GKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQL--- 87
Query: 321 TTGTKNKSKLIRAFNRAFLLVPRSGGGFAITND 353
K I F++ FLL + TND
Sbjct: 88 ----KADEDPIMGFHQMFLLKN-INDAWVCTND 115
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 45.6 bits (106), Expect = 6e-06
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 70 NVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIR 129
N ++ + + P L LN+S NKL I L + PR++ L + N++ ++
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKL------IELPALPPRLERLIASFNHLAEVP--- 320
Query: 130 TLESLSNLEELRLEKNPWTE 149
E NL++L +E NP E
Sbjct: 321 --ELPQNLKQLHVEYNPLRE 338
Score = 36.7 bits (83), Expect = 0.004
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 11/64 (17%)
Query: 79 INENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLE 138
+ P L L S N L + ++ +K L++ +N +++ + ++E
Sbjct: 299 LPALPPRLERLIASFNHL------AEVPELPQNLKQLHVEYNPLREFP-----DIPESVE 347
Query: 139 ELRL 142
+LR+
Sbjct: 348 DLRM 351
Score = 34.0 bits (76), Expect = 0.030
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 89 LNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWT 148
L L+ L SL ++ P ++ L + N++ +L E +L+ L ++ N
Sbjct: 43 LELNNLGL------SSLPELPPHLESLVASCNSLTELP-----ELPQSLKSLLVDNNNLK 91
Query: 149 ECFN 152
+
Sbjct: 92 ALSD 95
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 43.8 bits (102), Expect = 2e-05
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
+L L L + NK+ SL +L + L HN I DL L +L+ + +L
Sbjct: 326 SSLTKLQRLFFANNKVSDVSSLANL----TNINWLSAGHNQISDLT---PLANLTRITQL 378
Query: 141 RLEKN 145
L
Sbjct: 379 GLNDQ 383
Score = 39.2 bits (90), Expect = 7e-04
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 76 CNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLS 135
NL +L L L N + + SL +++ L+ A+N + D++ +L +L+
Sbjct: 299 DISPISNLKNLTYLTLYFNNISDISPVSSL----TKLQRLFFANNKVSDVS---SLANLT 351
Query: 136 NLEELRLEKN 145
N+ L N
Sbjct: 352 NINWLSAGHN 361
Score = 36.1 bits (82), Expect = 0.006
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 7/65 (10%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L + L + + S L +V L IK + + E L+NL ++
Sbjct: 19 TALAEKMKTVLGKTNVTDTVSQTDLDQV----TTLQADRLGIKSIDGV---EYLNNLTQI 71
Query: 141 RLEKN 145
N
Sbjct: 72 NFSNN 76
Score = 31.1 bits (69), Expect = 0.23
Identities = 9/75 (12%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 78 IINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNL 137
+ +L + L + + + L + + ++N + D+ ++ L L ++
Sbjct: 38 VSQTDLDQVTTLQADRLGIKSIDGVEYL----NNLTQINFSNNQLTDITPLKNLTKLVDI 93
Query: 138 EELRLEKNPWTECFN 152
+ T N
Sbjct: 94 LMNNNQIADITPLAN 108
Score = 28.0 bits (61), Expect = 2.4
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 113 KILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTE 149
L L NNI D++ + SL+ L+ L N ++
Sbjct: 310 TYLTLYFNNISDISPV---SSLTKLQRLFFANNKVSD 343
Score = 26.1 bits (56), Expect = 8.9
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 76 CNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLS 135
+ L +L +L + N++ S I+ ++ + L L N +KD I TL SL+
Sbjct: 189 DISVLAKLTNLESLIATNNQI----SDITPLGILTNLDELSLNGNQLKD---IGTLASLT 241
Query: 136 NLEELRLEKNPWTE 149
NL +L L N +
Sbjct: 242 NLTDLDLANNQISN 255
>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 121
Score = 41.0 bits (96), Expect = 3e-05
Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 40/150 (26%)
Query: 205 DILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIE 264
+ + F + Y+ FDT R+ L + Y + + +Q
Sbjct: 4 TLAQNFTQFYYNQFDT-DRSQLGNLYRNESMLTFETSQ---------------------- 40
Query: 265 EPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDC-PLYTPGLIQFSVCGLYEEITTG 323
G DI+ L LP K T D P G + + G
Sbjct: 41 ---------LQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPYGDVLVMITG------DL 85
Query: 324 TKNKSKLIRAFNRAFLLVPRSGGGFAITND 353
++ + + F++ F L+P G + + ND
Sbjct: 86 LIDEEQNPQRFSQVFHLIP-DGNSYYVFND 114
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 42.7 bits (98), Expect = 6e-05
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 72 MTSVCNIINENLPDLFALNLSENKLYYPESLISLAKVI---PRVKILYLAHNNIKDLATI 128
+ +C + + L L L++ + S SLA + ++ L L++N + D +
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVS-DSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415
Query: 129 RTLESL----SNLEELRLEKNPWTECFNEQDAYTSEVRKIFPKL 168
+ +ES+ LE+L L W+E E + + K P L
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSE---EMEDRLQALEKDKPSL 456
Score = 41.9 bits (96), Expect = 1e-04
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 85 DLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATI---RTLESLSNLEELR 141
D+ +L++ +L L ++ + +++ L + + L L EL
Sbjct: 3 DIQSLDIQCEELS-DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 142 LEKNPWTE 149
L N +
Sbjct: 62 LRSNELGD 69
Score = 36.5 bits (82), Expect = 0.006
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 8/81 (9%)
Query: 81 ENLPDLFALNLSENKLYYPESLISLAKVI---PRVKILYLAHNNIKDLATIRTLESLS-- 135
L + L + L ++ + P + L L N + D+ L+ L
Sbjct: 24 PLLQQCQVVRLDDCGLT-EARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82
Query: 136 --NLEELRLEKNPWTECFNEQ 154
+++L L+ T
Sbjct: 83 SCKIQKLSLQNCCLTGAGCGV 103
Score = 32.3 bits (71), Expect = 0.11
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 112 VKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIFPKLLKL 171
++ L + + D L L + +RL+ TE + S ++ P L +L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTE---ARCKDISSALRVNPALAEL 60
Query: 172 D 172
+
Sbjct: 61 N 61
>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2)
{Cryptosporidium parvum [TaxId: 5807]}
Length = 117
Score = 39.8 bits (93), Expect = 7e-05
Identities = 28/149 (18%), Positives = 43/149 (28%), Gaps = 39/149 (26%)
Query: 205 DILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIE 264
I + F++ Y+ F T +R L Y + + TQ
Sbjct: 3 QIGKQFVQHYYQTFQT-NRPALGGLYGPQSMLTWEDTQ---------------------- 39
Query: 265 EPQRQKSLLSVGKADILRALRFLPATKHDLLSFTCDCPLYTPGLIQFSVCGLYEEITTGT 324
G+A+I+ L + DC V G
Sbjct: 40 ---------FQGQANIVNKFNSLNFQRVQFEITRVDCQPSPNNGSIVFVTGDV------- 83
Query: 325 KNKSKLIRAFNRAFLLVPRSGGGFAITND 353
+ F++ F L+P GGF I ND
Sbjct: 84 RIDDGQPLKFSQVFNLMPSGNGGFMIFND 112
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 38.5 bits (88), Expect = 6e-04
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 80 NENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
+ L + L + + S L +V L IK + + E L+NL +
Sbjct: 14 DTALAEKMKTVLGKTNVTDTVSQTDL----DQVTTLQADRLGIKSIDGV---EYLNNLTQ 66
Query: 140 LRLEKNPWTECFN 152
+ N T+
Sbjct: 67 INFSNNQLTDITP 79
Score = 29.6 bits (65), Expect = 0.50
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 100 ESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEEL 140
L LA + ++ L ++ N + D I L L+NLE L
Sbjct: 163 TDLKPLAN-LTTLERLDISSNKVSD---ISVLAKLTNLESL 199
>d1jkga_ d.17.4.2 (A:) NTF2-related export protein 1 (p15) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 36.1 bits (83), Expect = 0.002
Identities = 24/151 (15%), Positives = 41/151 (27%), Gaps = 46/151 (30%)
Query: 210 FLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLLRIEEPQRQ 269
F+ Y+ D R L Y A N +
Sbjct: 19 FVNVYYTTMDK-RRRLLSRLYMGTATL--------------------VWNGNAVS----- 52
Query: 270 KSLLSVGKADILRALRFLPATKHDLLSFTC----DCPLYTPGLIQFSVCGLYEEITTGTK 325
G+ + LP+++ + C D + + +CG K
Sbjct: 53 ------GQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSV-------K 99
Query: 326 NKSKLIRAFNRAFLLVP---RSGGGFAITND 353
+ R FN+ F+L S + I +D
Sbjct: 100 FEGNKQRDFNQNFILTAQASPSNTVWKIASD 130
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 37.0 bits (84), Expect = 0.003
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 90 NLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPW 147
+L N++Y P+ L L + L ++ NN+ I +L + N
Sbjct: 250 DLRNNRIYGTLPQGLTQL----KFLHSLNVSFNNLCG--EIPQGGNLQRFDVSAYANNKC 303
Score = 27.8 bits (60), Expect = 2.7
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNN 121
L L +LN+S N L I + R + A+N
Sbjct: 266 QLKFLHSLNVSFNNL---CGEIPQGGNLQRFDVSAYANNK 302
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 35.4 bits (80), Expect = 0.008
Identities = 10/73 (13%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 80 NENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
++ + NL + + ++ + + + + +++IK ++ ++ L N+ +
Sbjct: 20 DDAFAETIKDNLKKKSV---TDAVTQNE-LNSIDQIIANNSDIKS---VQGIQYLPNVTK 72
Query: 140 LRLEKNPWTECFN 152
L L N T+
Sbjct: 73 LFLNGNKLTDIKP 85
Score = 32.3 bits (72), Expect = 0.087
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 110 PRVKILYLAHNNIKDLATIRTLESLSNLEELRL 142
+++ LYL+ N+I D +R L L NL+ L L
Sbjct: 178 TKLQNLYLSKNHISD---LRALAGLKNLDVLEL 207
Score = 26.1 bits (56), Expect = 7.5
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYL 117
L L L LS+N + +L L + +L L
Sbjct: 176 GLTKLQNLYLSKNHISDLRALAGL----KNLDVLEL 207
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 34.6 bits (78), Expect = 0.014
Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 80 NENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEE 139
+ L + + ++ + ++ A + + L + + + + L+NL
Sbjct: 15 DPALANAIKIAAGKSNV---TDTVTQAD-LDGITTLSAFGTGVTTIEGV---QYLNNLIG 67
Query: 140 LRLEKNPWTEC 150
L L+ N T+
Sbjct: 68 LELKDNQITDL 78
Score = 32.7 bits (73), Expect = 0.064
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 76 CNIINENLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLS 135
NL L L +NK+ L SL P + ++L +N I D + L + S
Sbjct: 165 DLTPLANLSKLTTLKADDNKISDISPLASL----PNLIEVHLKNNQISD---VSPLANTS 217
Query: 136 NLEELRLE 143
NL + L
Sbjct: 218 NLFIVTLT 225
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 34.3 bits (77), Expect = 0.020
Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 75 VCNIINENLPDLFALNLSENKLYYPESLISLAKVIPR-VKILYLAHNNIKDLATIRTLES 133
+C + + +N + +L +L +P+ IL+L+ N + ++ TL
Sbjct: 3 ICEV--SKVASHLEVNCDKR------NLTALPPDLPKDTTILHLSENLLYTF-SLATLMP 53
Query: 134 LSNLEELRLEKNPWTECFN 152
+ L +L L++ T+
Sbjct: 54 YTRLTQLNLDRAELTKLQV 72
Score = 30.1 bits (66), Expect = 0.43
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 109 IPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPW 147
+ + L L N++ + + L L NPW
Sbjct: 171 LENLDTLLLQENSLYTI--PKGFFGSHLLPFAFLHGNPW 207
Score = 27.0 bits (58), Expect = 4.3
Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 5/73 (6%)
Query: 49 SKFYADPDFVEANMFVPLDRSNVMTSVCNIINENLPDLFALNLSENKLYY-PESLISLAK 107
+ +N +T + + L +L L L EN LY P+
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-- 194
Query: 108 VIPRVKILYLAHN 120
+ +L N
Sbjct: 195 --HLLPFAFLHGN 205
>d2np3a2 a.121.1.1 (A:100-211) Putative transcriptional regulator
SCO0857 {Streptomyces coelicolor [TaxId: 1902]}
Length = 112
Score = 31.2 bits (71), Expect = 0.061
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 12/69 (17%)
Query: 196 SFLCHPEARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLA 255
S H A LR A + G+I + S+V TQ +G LA
Sbjct: 31 SAAIHRAAAARLRETATGILA----RALGGVITGEDAMLRTSMVATQLVG--------LA 78
Query: 256 NSRNLLRIE 264
R + +E
Sbjct: 79 MMRYVAHLE 87
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 32.9 bits (73), Expect = 0.066
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 6/98 (6%)
Query: 89 LNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATI---RTLESLSNLEELRLEKN 145
++ +S+ ++ VK + L+ N I A + S +LE
Sbjct: 13 DAITTEDE---KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69
Query: 146 PWTECFNEQDAYTSEVRKIFPKLLKLDDIQLPPPIVFD 183
+E + + K KL ++L
Sbjct: 70 FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 107
Score = 31.4 bits (69), Expect = 0.23
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 13/75 (17%)
Query: 110 PRVKILYLAHNNIKDLATIR----TLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIF 165
++ L L +N I+ A E + +L L L N F+E+D E+R++F
Sbjct: 273 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN----RFSEEDDVVDEIREVF 328
Query: 166 PK-----LLKLDDIQ 175
L +LDD++
Sbjct: 329 STRGRGELDELDDME 343
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 30.3 bits (67), Expect = 0.26
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 82 NLPDLFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESL 134
N L+L K+ E+L + + + + + N I+ L L L
Sbjct: 16 NAVRDRELDLRGYKIPVIENLGAT---LDQFDAIDFSDNEIRKLDGFPLLRRL 65
Score = 29.1 bits (64), Expect = 0.66
Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 25/126 (19%)
Query: 68 RSNVMTSVCNIINENLPDLFALNLSENKLYYPESLISLAKV------------------- 108
R + + N+ L A++ S+N++ + L ++
Sbjct: 26 RGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQ 84
Query: 109 -IPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIFPK 167
+P + L L +N++ +L + L SL +L L + +NP T + Y V P+
Sbjct: 85 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH----YRLYVIYKVPQ 140
Query: 168 LLKLDD 173
+ LD
Sbjct: 141 VRVLDF 146
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 30.4 bits (67), Expect = 0.42
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 13/69 (18%)
Query: 113 KILYLAHNNIKDL-----ATIRTLESLSNLEELRLEKNPWTECFNEQDAYTSEVRKIFPK 167
+++YL +NNI + ++ + L NP + F
Sbjct: 245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST--------FRC 296
Query: 168 LLKLDDIQL 176
+ +QL
Sbjct: 297 VYVRAAVQL 305
Score = 26.9 bits (58), Expect = 5.2
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 101 SLISLAKVIPR-VKILYLAHNNIKDLATIRTLESLSNLEELRL 142
L + K +P +L L +N I ++ ++L NL L L
Sbjct: 21 GLEKVPKDLPPDTALLDLQNNKITEIKD-GDFKNLKNLHTLIL 62
>d1oh0a_ d.17.4.3 (A:) Delta-5-3-ketosteroid isomerase, steroid
delta-isomerase, KSI {Pseudomonas putida [TaxId: 303]}
Length = 125
Score = 29.0 bits (64), Expect = 0.56
Identities = 7/36 (19%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 201 PEARDILRAFLEQYFALFDTESRAGLIDAYHENAQY 236
P A+++ + + +Y L D ++ Y ++A
Sbjct: 2 PTAQEV-QGLMARYIELVDVGDIEAIVQMYADDATV 36
>d1ohpa1 d.17.4.3 (A:1-125) Delta-5-3-ketosteroid isomerase, steroid
delta-isomerase, KSI {Comamonas testosteroni, also known
as Pseudomonas testosteroni [TaxId: 285]}
Length = 125
Score = 28.3 bits (62), Expect = 0.93
Identities = 5/33 (15%), Positives = 16/33 (48%)
Query: 204 RDILRAFLEQYFALFDTESRAGLIDAYHENAQY 236
+ + A +++Y A + G++ + ++A
Sbjct: 4 PEHMTAVVQRYVAALNAGDLDGIVALFADDATV 36
>d2rfra1 d.17.4.28 (A:1-153) Uncharacterized protein Saro3722
{Novosphingobium aromaticivorans [TaxId: 48935]}
Length = 153
Score = 28.6 bits (63), Expect = 1.0
Identities = 10/60 (16%), Positives = 25/60 (41%)
Query: 202 EARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQGLGNNHLLNNMLANSRNLL 261
E R+ +R + +Y L D+ L + + E+ +Y++V + ++ +
Sbjct: 15 EDREEIRELIARYGPLADSGDAEALSELWVEDGEYAVVGFATAKGRAAIAALIDGQTHRA 74
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2,
KH3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 26.3 bits (58), Expect = 2.0
Identities = 5/40 (12%), Positives = 14/40 (35%)
Query: 329 KLIRAFNRAFLLVPRSGGGFAITNDQLFITSATPEQAEKA 368
+ A + + + G T ++ + +P + A
Sbjct: 26 VEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAA 65
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 27.3 bits (59), Expect = 2.9
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 116 YLAHNNIKDLATIRTLESLSNLEELRLEKNPWTECFNEQDA---YTSEVRKIFPKLLKLD 172
Y+++N I + I L +L LE+L L NP + E +A Y EV K P L KLD
Sbjct: 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
Query: 173 DI 174
+
Sbjct: 181 GM 182
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 54
Score = 24.9 bits (55), Expect = 3.3
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 390 IKQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTI 426
I ++VK L + +G + +K L E D + A+
Sbjct: 3 ITASLVKELRERTGAGMMDCKKALTEANGDIELAIEN 39
>d3blza1 d.17.4.14 (A:3-126) Uncharacterized protein Sbal0622
{Shewanella baltica [TaxId: 62322]}
Length = 124
Score = 26.7 bits (58), Expect = 3.4
Identities = 5/42 (11%), Positives = 10/42 (23%)
Query: 202 EARDILRAFLEQYFALFDTESRAGLIDAYHENAQYSLVVTQG 243
+ + L +Y + A+ A V
Sbjct: 6 QEYHAIVEVLSKYNEGGKKADSTIMRPAFSSQATIFGVDVDN 47
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 27.4 bits (59), Expect = 3.8
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 86 LFALNLSENKLYYPESLISLAKVIPRVKILYLAHNNIKDLATIRTLESLSNLEELRLEKN 145
+ A + + P ++ RV+ + L+++ I+ L S L+ L LE
Sbjct: 25 VIAFRCPRSFMDQP---LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81
Query: 146 PWTE 149
++
Sbjct: 82 RLSD 85
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 46
Score = 24.2 bits (53), Expect = 4.9
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 391 KQNMVKALSQVSGMNLNFSEKCLNEVQWDYDQAVTIF 427
+Q+ ++ V+G + + L WD A+ F
Sbjct: 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASF 41
>d2g5da1 b.52.1.4 (A:40-441) Membrane-bound lytic murein
transglycosylase A, MLTA {Neisseria gonorrhoeae [TaxId:
485]}
Length = 402
Score = 26.9 bits (59), Expect = 6.0
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 207 LRAFLEQYFALF---DTESRAGLIDAYHE 232
+ F E+YF + S AG + Y+E
Sbjct: 75 AKRFFERYFTPWQVAGNGSLAGTVTGYYE 103
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 26.3 bits (57), Expect = 7.3
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 11/68 (16%)
Query: 159 SEVRKIFPKLLKLDDI----------QLPPPIVFDLEDNIELPKPQ-GSFLCHPEARDIL 207
SE+RK+F + D+ P I ++ ++ G + E R+ +
Sbjct: 12 SEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAI 71
Query: 208 RAFLEQYF 215
L++
Sbjct: 72 AEKLKKQN 79
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 26.0 bits (55), Expect = 8.3
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 8/59 (13%)
Query: 72 MTSVCNIINENLPDLFALNLSENKLYY--PESLISLAKVIPRVKILYLAHNNIKDLATI 128
+ + N + L++S +++ L +L K+ + N+K L T+
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR------ARSTYNLKKLPTL 241
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.383
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,561,318
Number of extensions: 72680
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 66
Length of query: 442
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 354
Effective length of database: 1,199,356
Effective search space: 424572024
Effective search space used: 424572024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)