BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11420
(315 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|193702257|ref|XP_001946012.1| PREDICTED: cryptochrome-1-like [Acyrthosiphon pisum]
Length = 535
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/278 (69%), Positives = 225/278 (80%), Gaps = 6/278 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPREC--QGILHPDEHLVPTMKEM----GLDESSI 54
MTYQK VSV+ S+P P+ AP LP EC L+ E VPT+ E+ G + + +
Sbjct: 162 MTYQKFVSVVGSMPTPRRPIPAPDMLPSECLLDDDLNNPEFDVPTLDELLTLKGFNPAEL 221
Query: 55 PLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
C +PGGE EAL+RLE+ + NK WV KFEKPNT+PNSL+PSTTVLSPY+KFGCLS F
Sbjct: 222 KPCLYPGGEKEALRRLEEYMKNKTWVCKFEKPNTSPNSLKPSTTVLSPYMKFGCLSASHF 281
Query: 115 YHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKY 174
Y+ LK+++ PH+KPPVSL+GQ+YWREFYY VG+ TPNFDKM GN ICCQV WD N
Sbjct: 282 YYRLKEVIGNSPHSKPPVSLIGQLYWREFYYTVGASTPNFDKMVGNSICCQVPWDNNPDA 341
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
LEAW++GKTGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWE+G +VFEELLL
Sbjct: 342 LEAWTNGKTGYPFIDAIMRQLRDEGWIHHLARHAVACFLTRGDLWISWEKGLAVFEELLL 401
Query: 235 DADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
DADW+MNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK
Sbjct: 402 DADWSMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 439
>gi|312378885|gb|EFR25332.1| hypothetical protein AND_09443 [Anopheles darlingi]
Length = 558
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/283 (66%), Positives = 219/283 (77%), Gaps = 18/283 (6%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLP------------RECQGILHPDEHLVPTMKEMG 48
+TYQK VS+ + P P AP LP R+ Q P PTM E+
Sbjct: 156 LTYQKYVSLASACTIPLPLP-APQKLPGKGVEPEKDSQERKDQSCYDP-----PTMNELD 209
Query: 49 LDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGC 108
+DE S+ CKFPGGETEAL R+E+ L+ K W+ FEKPNT+PNSLEPSTTVLSPYLKFGC
Sbjct: 210 IDEGSLLECKFPGGETEALSRMEQCLSRKAWICSFEKPNTSPNSLEPSTTVLSPYLKFGC 269
Query: 109 LSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDW 168
LS RLFY +++ + H++PPVSL+GQ+ WREFYY V + TPNFDKM GN +C QVDW
Sbjct: 270 LSARLFYSRIQETIKGQKHSQPPVSLIGQMMWREFYYCVAAVTPNFDKMSGNDVCIQVDW 329
Query: 169 DTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSV 228
DTN++YL AW+ G+TGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWEEGQ V
Sbjct: 330 DTNKEYLNAWTEGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRV 389
Query: 229 FEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
FEELLLDADWA+NAGNWMWLSASAFFHQ+FRVYSPVAFGKKTD
Sbjct: 390 FEELLLDADWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTD 432
>gi|158293404|ref|XP_314748.3| AGAP008651-PA [Anopheles gambiae str. PEST]
gi|157016689|gb|EAA10141.3| AGAP008651-PA [Anopheles gambiae str. PEST]
Length = 556
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 184/277 (66%), Positives = 223/277 (80%), Gaps = 6/277 (2%)
Query: 1 MTYQKLVS------VLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSI 54
+TYQ+ + + + LP P+ TS + + +P + PTM+E+ ++E+S+
Sbjct: 156 LTYQRYATLASACKIPQPLPVPQKLPAKETSPEADKEERKNPSCYDPPTMEELDIEEASM 215
Query: 55 PLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
CKFPGGE+EAL+R+ + L+ K WV KFEKPNT+PNSLEPSTTVLSPYLKFGCLSVRLF
Sbjct: 216 GQCKFPGGESEALRRMNEILSRKAWVCKFEKPNTSPNSLEPSTTVLSPYLKFGCLSVRLF 275
Query: 115 YHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKY 174
Y + + + H++PPVSL+GQ+ WREFYY V + TPN+DKM GN IC Q+DWDTN+ Y
Sbjct: 276 YSRIAETIKGQKHSQPPVSLIGQVMWREFYYCVAAATPNYDKMVGNGICTQIDWDTNKDY 335
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
LEAW+HG+TGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VFEELLL
Sbjct: 336 LEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELLL 395
Query: 235 DADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DADWA+NAGNWMWLSASAFFHQ+FRVYSPVAFGKKTD
Sbjct: 396 DADWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTD 432
>gi|157115313|ref|XP_001658195.1| DNA photolyase [Aedes aegypti]
gi|108883518|gb|EAT47743.1| AAEL001175-PA [Aedes aegypti]
Length = 553
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 181/277 (65%), Positives = 214/277 (77%), Gaps = 7/277 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLV------PTMKEMGLDESSI 54
+TYQK S+ +L P+P P +P +C +E P + E+G+ E +
Sbjct: 156 LTYQKYGSLASTLKIPEPVA-TPKEIPSDCVPKQDSNERKRANCYDPPLLVELGVKEEDL 214
Query: 55 PLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
CKFPGGETEAL+RLE + K WV FEKPNT+PNSLEPSTTVLSPY+KFGCLS RLF
Sbjct: 215 GECKFPGGETEALRRLEDHMKRKSWVCSFEKPNTSPNSLEPSTTVLSPYVKFGCLSARLF 274
Query: 115 YHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKY 174
EL+ ++ H++PPVSL+GQ+ WREFYY +D PNFDKM GN IC V WD+N+++
Sbjct: 275 MRELQTVIKGQKHSQPPVSLIGQLMWREFYYCAAADEPNFDKMVGNSICLHVPWDSNKEF 334
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
LEAW+HG+TGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VFEE LL
Sbjct: 335 LEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEEFLL 394
Query: 235 DADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DADWA+NAGNWMWLSASAFFHQ+FRVYSPVAFGKKTD
Sbjct: 395 DADWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTD 431
>gi|195030094|ref|XP_001987903.1| GH10854 [Drosophila grimshawi]
gi|193903903|gb|EDW02770.1| GH10854 [Drosophila grimshawi]
Length = 538
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/272 (66%), Positives = 217/272 (79%), Gaps = 2/272 (0%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFP 60
+TYQK + ++E L PK + P LP Q + D + PT++++ + + KFP
Sbjct: 157 ITYQKFLGIVEKLKLPK-VLNKPKKLPDGMQPLADSDIYDYPTLEQLVKRPEDLGINKFP 215
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKK 120
GGE+EAL+R+E SLA+++WV KFEKP TAPNSLEPSTTVLSPYLKFGCLS RLF+ L++
Sbjct: 216 GGESEALRRMEASLADEQWVAKFEKPKTAPNSLEPSTTVLSPYLKFGCLSARLFHERLQE 275
Query: 121 ILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
ILA P H+KPPVSL+GQ+ WREFYY V + PNFD+M GN C Q+ W ++LEAW+
Sbjct: 276 ILARQPKHSKPPVSLVGQLLWREFYYTVAAAEPNFDRMLGNAYCLQIPWQEQPEHLEAWA 335
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
HG+TGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VFE+LLLD DWA
Sbjct: 336 HGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLLDQDWA 395
Query: 240 MNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+NAGNWMWLSASAFFHQ+FRVYSPVAFGKKTD
Sbjct: 396 LNAGNWMWLSASAFFHQYFRVYSPVAFGKKTD 427
>gi|170065332|ref|XP_001867895.1| cryptochrome-1 [Culex quinquefasciatus]
gi|167882412|gb|EDS45795.1| cryptochrome-1 [Culex quinquefasciatus]
Length = 539
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/279 (65%), Positives = 214/279 (76%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLE--------SLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDES 52
+TYQK S+ +P PA+ P RE + D PT+ E+ + +
Sbjct: 135 LTYQKYGSLASMCKTPGPIGVPDKVPAESVPEKDKRERKDGKCYDP---PTLDELKVRQE 191
Query: 53 SIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVR 112
+ CKFPGGETEAL+RL+ ++ K WV FEKPNT+PNSLEPSTTVLSPY+KFGCLS R
Sbjct: 192 DLGECKFPGGETEALRRLQDYMSRKSWVCAFEKPNTSPNSLEPSTTVLSPYVKFGCLSAR 251
Query: 113 LFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
LF ELKK+LA H++PPVSL+GQ+ WREFYY + PNFDKM GN +C QV W+TN
Sbjct: 252 LFMAELKKVLAGQKHSQPPVSLVGQLMWREFYYCAAAAEPNFDKMVGNSVCLQVPWETNP 311
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
++L AW+HG+TGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VFEEL
Sbjct: 312 EHLAAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEEL 371
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDADWA+NAGNWMWLSASAFFHQFFRVYSPVAFGKKTD
Sbjct: 372 LLDADWALNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 410
>gi|405975335|gb|EKC39908.1| Cryptochrome-1 [Crassostrea gigas]
Length = 510
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 175/272 (64%), Positives = 212/272 (77%), Gaps = 1/272 (0%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFP 60
+TYQ+L +VL SL P D+P+ + + H ++ VP+++++G E FP
Sbjct: 148 LTYQRLQTVLSSLGSPPKPVDSPSECKTKTESD-HDKKYGVPSLEDLGKSEKECGPLLFP 206
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKK 120
GGETEAL+RLE + K WV FEKP TAPNSLEPSTTVLSPYLKFGCLS R+FY++L++
Sbjct: 207 GGETEALRRLESMMGKKNWVCTFEKPKTAPNSLEPSTTVLSPYLKFGCLSPRMFYYKLQE 266
Query: 121 ILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSH 180
+ H PPVSLLGQ+ WREFYY V DTPNFDKM+GN +C Q+ WDTNE YL+AW
Sbjct: 267 VYNKAKHTSPPVSLLGQLLWREFYYCVAVDTPNFDKMEGNPVCKQIPWDTNESYLKAWKE 326
Query: 181 GKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAM 240
G+TGYPFIDA+M QLR EGWIHHLARH+VACFLTRGDL+++WEEG VFEE LLDADW++
Sbjct: 327 GRTGYPFIDAVMTQLRQEGWIHHLARHSVACFLTRGDLWINWEEGMKVFEEYLLDADWSL 386
Query: 241 NAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
NAGNWMWLSASAFFHQ+FRVYSP+ FGKKTDK
Sbjct: 387 NAGNWMWLSASAFFHQYFRVYSPIEFGKKTDK 418
>gi|195119085|ref|XP_002004062.1| GI19664 [Drosophila mojavensis]
gi|193914637|gb|EDW13504.1| GI19664 [Drosophila mojavensis]
Length = 532
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/279 (64%), Positives = 211/279 (75%), Gaps = 8/279 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGIL------HPDEHLVPTMKEMGLDESSI 54
+TYQK +SV+E L PK D P LP Q I D + PT+ ++ +
Sbjct: 157 ITYQKFLSVVEKLKLPK-VLDKPQRLPNGVQPIADELEMGQSDVYECPTLDQLVKRPQEL 215
Query: 55 PLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
+ KFPGGE EAL+RL+ SL+++ WV FEKPNTAPNSLEPSTTVLSPYLKFGCLS RL
Sbjct: 216 GINKFPGGEREALRRLDTSLSDEHWVASFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLV 275
Query: 115 YHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEK 173
+ L +IL P H+KPPVSL+GQ+ WREFYY + PNFD+M GN C Q+ W
Sbjct: 276 HQRLHEILKRHPKHSKPPVSLVGQLLWREFYYTAAAVEPNFDRMLGNVYCLQIPWQERPD 335
Query: 174 YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELL 233
+L+AW+HG+TGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VFEELL
Sbjct: 336 HLDAWAHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEELL 395
Query: 234 LDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
LD DWA+NAGNWMWLSASAFFHQ+FRVYSPVAFGKKTD+
Sbjct: 396 LDHDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDR 434
>gi|194878837|ref|XP_001974136.1| GG21562 [Drosophila erecta]
gi|190657323|gb|EDV54536.1| GG21562 [Drosophila erecta]
Length = 540
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 179/282 (63%), Positives = 212/282 (75%), Gaps = 16/282 (5%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLV----------PTMKEMGLD 50
+TYQK + ++E L PK P + Q I P V PTM+++
Sbjct: 157 ITYQKFLGIVEQLKLPKV-----LGAPEKLQNITTPPNDEVEQEDSAAYDCPTMEQLVKR 211
Query: 51 ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLS 110
+ KFPGGETEAL+R+E SL ++ WV +FEKPNTAPNSLEPSTTVLSPYLKFGCLS
Sbjct: 212 PEELGPNKFPGGETEALRRMEDSLKDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLS 271
Query: 111 VRLFYHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWD 169
RLF +LK+I+ P H++PPVSL+GQ+ WREFYY V + PNFD+M GN C Q+ W
Sbjct: 272 ARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMMGNVYCMQIPWQ 331
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
+ +LEAW+HG+TGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VF
Sbjct: 332 EHPNHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVF 391
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
E+LLLD DWA+NAGNWMWLSASAFFHQ+FRVYSPVAFGKKTD
Sbjct: 392 EQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTD 433
>gi|17137248|ref|NP_477188.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
gi|24585455|ref|NP_724274.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
gi|442628599|ref|NP_001260632.1| (6-4)-photolyase, isoform C [Drosophila melanogaster]
gi|442628601|ref|NP_001260633.1| (6-4)-photolyase, isoform D [Drosophila melanogaster]
gi|7298691|gb|AAF53904.1| (6-4)-photolyase, isoform B [Drosophila melanogaster]
gi|22946921|gb|AAN11080.1| (6-4)-photolyase, isoform A [Drosophila melanogaster]
gi|201065459|gb|ACH92139.1| FI01404p [Drosophila melanogaster]
gi|440213996|gb|AGB93167.1| (6-4)-photolyase, isoform C [Drosophila melanogaster]
gi|440213997|gb|AGB93168.1| (6-4)-photolyase, isoform D [Drosophila melanogaster]
Length = 540
Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 178/282 (63%), Positives = 215/282 (76%), Gaps = 16/282 (5%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLV----------PTMKEMGLD 50
+TYQK + ++E L PK +P + + + P + V PTMK++
Sbjct: 157 ITYQKFLGIVEQLKVPKV-----LGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKR 211
Query: 51 ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLS 110
+ KFPGGETEAL+R+E+SL ++ WV +FEKPNTAPNSLEPSTTVLSPYLKFGCLS
Sbjct: 212 PEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLS 271
Query: 111 VRLFYHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWD 169
RLF +LK+I+ P H++PPVSL+GQ+ WREFYY V + PNFD+M GN C Q+ W
Sbjct: 272 ARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQ 331
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
+ +LEAW+HG+TGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VF
Sbjct: 332 EHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVF 391
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
E+LLLD DWA+NAGNWMWLSASAFFHQ+FRVYSPVAFGKKTD
Sbjct: 392 EQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTD 433
>gi|19528415|gb|AAL90322.1| RE11660p [Drosophila melanogaster]
Length = 540
Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 178/282 (63%), Positives = 215/282 (76%), Gaps = 16/282 (5%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLV----------PTMKEMGLD 50
+TYQK + ++E L PK +P + + + P + V PTMK++
Sbjct: 157 ITYQKFLGIVEQLKVPKV-----LGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKR 211
Query: 51 ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLS 110
+ KFPGGETEAL+R+E+SL ++ WV +FEKPNTAPNSLEPSTTVLSPYLKFGCLS
Sbjct: 212 PEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLS 271
Query: 111 VRLFYHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWD 169
RLF +LK+I+ P H++PPVSL+GQ+ WREFYY V + PNFD+M GN C Q+ W
Sbjct: 272 ARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQ 331
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
+ +LEAW+HG+TGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VF
Sbjct: 332 EHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVF 391
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
E+LLLD DWA+NAGNWMWLSASAFFHQ+FRVYSPVAFGKKTD
Sbjct: 392 EQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTD 433
>gi|211939158|pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion
gi|211939161|pdb|3CVY|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Repaired
Ds Dna
gi|225697970|pdb|2WB2|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Double
Stranded Dna Containing A T(6-4)c Photolesion
gi|240104285|pdb|3CVV|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna
With A T-T (6-4) Photolesion And F0 Cofactor
gi|289526487|pdb|2WQ6|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(Dewar)c Lesion
gi|289526490|pdb|2WQ7|A Chain A, Structure Of The 6-4 Photolyase Of D. Melanogaster In
Complex With The Non-Natural N4-Methyl T(6-4)c Lesion
Length = 543
Score = 367 bits (941), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 178/282 (63%), Positives = 215/282 (76%), Gaps = 16/282 (5%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLV----------PTMKEMGLD 50
+TYQK + ++E L PK +P + + + P + V PTMK++
Sbjct: 180 ITYQKFLGIVEQLKVPKV-----LGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKR 234
Query: 51 ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLS 110
+ KFPGGETEAL+R+E+SL ++ WV +FEKPNTAPNSLEPSTTVLSPYLKFGCLS
Sbjct: 235 PEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLS 294
Query: 111 VRLFYHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWD 169
RLF +LK+I+ P H++PPVSL+GQ+ WREFYY V + PNFD+M GN C Q+ W
Sbjct: 295 ARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQ 354
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
+ +LEAW+HG+TGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VF
Sbjct: 355 EHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVF 414
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
E+LLLD DWA+NAGNWMWLSASAFFHQ+FRVYSPVAFGKKTD
Sbjct: 415 EQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTD 456
>gi|195387030|ref|XP_002052207.1| GJ17431 [Drosophila virilis]
gi|194148664|gb|EDW64362.1| GJ17431 [Drosophila virilis]
Length = 541
Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 177/278 (63%), Positives = 210/278 (75%), Gaps = 8/278 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHL------VPTMKEMGLDESSI 54
+TYQK + +++ L PK P LP + I E + PT+ ++ +
Sbjct: 157 VTYQKFLGIVDKLKLPK-VLAVPEGLPDGIKPIADEFEAVDSCVYDCPTLDQLVKRPQEL 215
Query: 55 PLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
+ KFPGGETEAL+R+E SL ++ WV FEKPNTAPNSLEPSTTVLSPYLKFGCLS RL
Sbjct: 216 GVNKFPGGETEALRRMEASLIDENWVAAFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLL 275
Query: 115 YHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEK 173
+ LK+IL P H+KPPVSL+GQ+ WREFYY V + PNFD+M GN C Q+ W
Sbjct: 276 HERLKEILVRKPKHSKPPVSLVGQLLWREFYYTVAAADPNFDRMLGNAYCLQIPWQKQPD 335
Query: 174 YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELL 233
+LEAW+HG+TGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWE+GQ VFE+LL
Sbjct: 336 HLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEDGQRVFEQLL 395
Query: 234 LDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LD DWA+NAGNWMWLSASAFFHQ+FRVYSPVAFGKKTD
Sbjct: 396 LDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTD 433
>gi|125986217|ref|XP_001356872.1| GA15376 [Drosophila pseudoobscura pseudoobscura]
gi|54645198|gb|EAL33938.1| GA15376 [Drosophila pseudoobscura pseudoobscura]
Length = 533
Score = 366 bits (939), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 177/277 (63%), Positives = 214/277 (77%), Gaps = 6/277 (2%)
Query: 1 MTYQKLVSVLESLPKPK----PADDAPTSLPRECQGILHPDE-HLVPTMKEMGLDESSIP 55
+TYQK +SV++ L PK P A +LP + + D + PT++++ +
Sbjct: 157 ITYQKFLSVVDQLKVPKVLELPEKLAKKALPPKDEVEQQDDNAYDCPTLEQLVKRPEDLG 216
Query: 56 LCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY 115
KFPGGETE L+R+++SL ++ WV +FEKPNTAPNSLEPSTTVLSPYLKFGCLS RLF+
Sbjct: 217 PNKFPGGETEGLRRMKESLRDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFH 276
Query: 116 HELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKY 174
+LK IL H++PPVSL+GQ+ WREFYY V + PNFD+M GN C Q+ W +
Sbjct: 277 QQLKAILKRQSKHSQPPVSLIGQLLWREFYYTVAAAEPNFDRMLGNVYCLQIPWQEQADH 336
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
LEAW+HG+TGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VFE+LLL
Sbjct: 337 LEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLL 396
Query: 235 DADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
D DWA+NAGNWMWLSASAFFHQ+FRVYSPVAFGKKTD
Sbjct: 397 DQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTD 433
>gi|1304062|dbj|BAA12067.1| photolyase [Drosophila melanogaster]
Length = 540
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 177/282 (62%), Positives = 215/282 (76%), Gaps = 16/282 (5%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLV----------PTMKEMGLD 50
+TYQK + ++E L PK +P + + + P + V PT+K++
Sbjct: 157 ITYQKFLGIVEQLKVPKV-----LGVPEKLKKMPTPPKDEVEQKDSAAYDCPTIKQLVKR 211
Query: 51 ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLS 110
+ KFPGGETEAL+R+E+SL ++ WV +FEKPNTAPNSLEPSTTVLSPYLKFGCLS
Sbjct: 212 PEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLS 271
Query: 111 VRLFYHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWD 169
RLF +LK+I+ P H++PPVSL+GQ+ WREFYY V + PNFD+M GN C Q+ W
Sbjct: 272 ARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQ 331
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
+ +LEAW+HG+TGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VF
Sbjct: 332 EHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVF 391
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
E+LLLD DWA+NAGNWMWLSASAFFHQ+FRVYSPVAFGKKTD
Sbjct: 392 EQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTD 433
>gi|321474453|gb|EFX85418.1| DNA photolyase 1 [Daphnia pulex]
Length = 524
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 172/274 (62%), Positives = 212/274 (77%), Gaps = 2/274 (0%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFP 60
+TY K SV+ P+ A +AP LP++CQ +L D++ VP ++EM +D + + +
Sbjct: 154 LTYVKFQSVVAKFGTPEKALNAPGKLPKQCQTLLLSDKYNVPLLEEMQVDLTGLGKELYR 213
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKK 120
GGETEAL R+EK ++ ++WV KF KP+T+PNS+EPSTTVLSPYLKFGCLS RL YH L +
Sbjct: 214 GGETEALARMEKYMSQQDWVCKFSKPDTSPNSIEPSTTVLSPYLKFGCLSPRLMYHRLHE 273
Query: 121 ILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDW--DTNEKYLEAW 178
I+ H PP SL GQ+ WREFYY G+ TPNF++M GN +C Q+ W D +++ AW
Sbjct: 274 IIDGRKHTSPPTSLTGQMLWREFYYTCGAYTPNFNRMVGNPVCKQIPWKVDPEDEHFVAW 333
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+G+TGYPFIDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE GQ VFEELLLDADW
Sbjct: 334 KNGRTGYPFIDAIMIQLRTEGWIHHLARHAVACFLTRGDLWVSWELGQQVFEELLLDADW 393
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
A+NAGNWMWLSASAFFH +FRVYSPVAFGKKTDK
Sbjct: 394 ALNAGNWMWLSASAFFHSYFRVYSPVAFGKKTDK 427
>gi|261278633|pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion And
Cofactor F0
Length = 543
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 177/282 (62%), Positives = 215/282 (76%), Gaps = 16/282 (5%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLV----------PTMKEMGLD 50
+TYQK + ++E L PK +P + + + P + V PTMK++
Sbjct: 180 ITYQKFLGIVEQLKVPKV-----LGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKR 234
Query: 51 ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLS 110
+ KFPGGETEAL+R+E+SL ++ WV +FEKPNTAPNSLEPSTTVLSPYLKFGCLS
Sbjct: 235 PEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLS 294
Query: 111 VRLFYHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWD 169
RLF +LK+I+ P H++PPVSL+GQ+ WREFYY V + PNFD+M GN C Q+ W
Sbjct: 295 ARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQ 354
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
+ +LEAW+HG+TGYPFIDAIMRQLR EGWIH+LARHAVACFLTRGDL++SWEEGQ VF
Sbjct: 355 EHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHNLARHAVACFLTRGDLWISWEEGQRVF 414
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
E+LLLD DWA+NAGNWMWLSASAFFHQ+FRVYSPVAFGKKTD
Sbjct: 415 EQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTD 456
>gi|195580452|ref|XP_002080051.1| GD21692 [Drosophila simulans]
gi|194192060|gb|EDX05636.1| GD21692 [Drosophila simulans]
Length = 540
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 176/282 (62%), Positives = 215/282 (76%), Gaps = 16/282 (5%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLV----------PTMKEMGLD 50
+TYQK + +++ L PK +P + + + P + V PTM+++
Sbjct: 157 ITYQKFLGIVDQLKVPKV-----LGVPEKLKKMHTPPKDEVEQKDSAAYDCPTMEQLVKR 211
Query: 51 ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLS 110
+ KFPGGETEAL+R+E+SL ++ WV +FEKPNTAPNSLEPSTTVLSPYLKFGCLS
Sbjct: 212 PEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLS 271
Query: 111 VRLFYHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWD 169
RLF +LK+I+ P H++PPVSL+GQ+ WREFYY V + PNFD+M GN C Q+ W
Sbjct: 272 ARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQ 331
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
+ +LEAW+HG+TGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VF
Sbjct: 332 EHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVF 391
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
E+LLLD DWA+NAGNWMWLSASAFFHQ+FRVYSPVAFGKKTD
Sbjct: 392 EQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTD 433
>gi|195351886|ref|XP_002042448.1| GM23319 [Drosophila sechellia]
gi|194124317|gb|EDW46360.1| GM23319 [Drosophila sechellia]
Length = 540
Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 176/282 (62%), Positives = 215/282 (76%), Gaps = 16/282 (5%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLV----------PTMKEMGLD 50
+TYQK + +++ L PK +P + + + P + V PTM+++
Sbjct: 157 ITYQKFLGIVDQLKVPKV-----LGVPEKLKKMPTPPKDEVEQKDSAAYDCPTMEQLVKR 211
Query: 51 ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLS 110
+ KFPGGETEAL+R+E+SL ++ WV +FEKPNTAPNSLEPSTTVLSPYLKFGCLS
Sbjct: 212 PEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLS 271
Query: 111 VRLFYHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWD 169
RLF +LK+I+ P H++PPVSL+GQ+ WREFYY V + PNFD+M GN C Q+ W
Sbjct: 272 ARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQ 331
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
+ +LEAW+HG+TGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VF
Sbjct: 332 KHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVF 391
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
E+LLLD DWA+NAGNWMWLSASAFFHQ+FRVYSPVAFGKKTD
Sbjct: 392 EQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTD 433
>gi|261278636|pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant
Bound To Ds Dna With A T-T (6-4) Photolesion
Length = 543
Score = 363 bits (933), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 177/282 (62%), Positives = 214/282 (75%), Gaps = 16/282 (5%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLV----------PTMKEMGLD 50
+TYQK + ++E L PK +P + + + P + V PTMK++
Sbjct: 180 ITYQKFLGIVEQLKVPKV-----LGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKR 234
Query: 51 ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLS 110
+ KFPGGETEAL+R+E+SL ++ WV +FEKPNTAPNSLEPSTTVLSPYLKFGCLS
Sbjct: 235 PEELGPNKFPGGETEALRRMEESLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLS 294
Query: 111 VRLFYHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWD 169
RLF +LK+I+ P H++PPVSL+GQ+ WREFYY V + PNFD+M GN C Q+ W
Sbjct: 295 ARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQ 354
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
+ +LEAW+HG+TGYPFIDAIMRQLR EGWIHHLAR AVACFLTRGDL++SWEEGQ VF
Sbjct: 355 EHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARMAVACFLTRGDLWISWEEGQRVF 414
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
E+LLLD DWA+NAGNWMWLSASAFFHQ+FRVYSPVAFGKKTD
Sbjct: 415 EQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTD 456
>gi|195433475|ref|XP_002064736.1| GK15094 [Drosophila willistoni]
gi|194160821|gb|EDW75722.1| GK15094 [Drosophila willistoni]
Length = 546
Score = 363 bits (931), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 176/277 (63%), Positives = 214/277 (77%), Gaps = 6/277 (2%)
Query: 1 MTYQKLVSVLESLPKPKPAD-----DAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIP 55
+TYQK ++++E L K D DA T R+ + + P+ +++ + +
Sbjct: 158 ITYQKFLALVEKLKLAKVLDKPEKLDALTQPSRDELEQENDKVYDCPSQEQLVKKPNELG 217
Query: 56 LCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY 115
FPGGETE L+R+E SL ++ WV +FEKPNTAPNSLEPSTTVLSPYLKFGCLS RLFY
Sbjct: 218 PNIFPGGETEGLRRMEDSLNDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSSRLFY 277
Query: 116 HELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKY 174
LK+ILA P H++PPVSL+GQ+ WREFYY V + PNFD+M GN C Q+ W + ++
Sbjct: 278 QRLKEILAKHPKHSQPPVSLVGQVLWREFYYTVAAAEPNFDRMLGNVYCLQIPWQEHPEH 337
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
LEAW++G+TGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VFE+LLL
Sbjct: 338 LEAWTYGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLLL 397
Query: 235 DADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
D DWA+NAGNWMWLSASAFFHQ+FRVYSPVAFGKKTD
Sbjct: 398 DQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTD 434
>gi|195484786|ref|XP_002090823.1| GE12583 [Drosophila yakuba]
gi|194176924|gb|EDW90535.1| GE12583 [Drosophila yakuba]
Length = 540
Score = 362 bits (930), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 176/282 (62%), Positives = 211/282 (74%), Gaps = 16/282 (5%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLV----------PTMKEMGLD 50
+TYQK + ++E L PK P + I P + V PTM+++
Sbjct: 157 ITYQKFLGIVEQLKLPKVLGS-----PEKLTNITSPPKDEVEQEDLAAYDCPTMEQLVKR 211
Query: 51 ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLS 110
+ KFPGGETEAL+R+E SL ++ WV +FEKPNTAPNSLEPSTTVLSPYLKFGCLS
Sbjct: 212 PEELGPNKFPGGETEALRRMEDSLKDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLS 271
Query: 111 VRLFYHELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWD 169
RLFY +L +I+ H++PPVSL+GQ+ WREFYY V + PNFD+M GN C Q+ W
Sbjct: 272 ARLFYQKLTEIIKRQSKHSQPPVSLIGQLMWREFYYTVAAAEPNFDRMLGNVYCMQIPWQ 331
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
+ +LEAW+HG+TGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VF
Sbjct: 332 EHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVF 391
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
E+LLLD DWA+NAGNWMWLSASAFF+Q+FRVYSPVAFGKKTD
Sbjct: 392 EQLLLDQDWALNAGNWMWLSASAFFYQYFRVYSPVAFGKKTD 433
>gi|194759941|ref|XP_001962202.1| GF14557 [Drosophila ananassae]
gi|190615899|gb|EDV31423.1| GF14557 [Drosophila ananassae]
Length = 539
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 175/282 (62%), Positives = 215/282 (76%), Gaps = 16/282 (5%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHP----------DEHLVPTMKEMGLD 50
+TYQK + ++E L P D LP + + + P + + PTM+++
Sbjct: 157 ITYQKFLGIVEKLKLPTVLD-----LPEKLKEKVQPPKDDIEEKDSEAYDCPTMEQLVKR 211
Query: 51 ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLS 110
+ KFPGGETEAL+R+E+SL ++ WV +FEKPNTAPNSLEPSTTVLSPYLKFGCLS
Sbjct: 212 PEDLGPLKFPGGETEALRRMEESLKDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLS 271
Query: 111 VRLFYHELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWD 169
RLF+ LK+IL H++PPVSL+GQ+ WREFYY V + PNFD+M GN C Q+ W+
Sbjct: 272 SRLFHQRLKEILKRQTKHSQPPVSLIGQMMWREFYYTVAAAEPNFDRMLGNVYCLQIPWE 331
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
+ +L+AW++G+TGYPFIDAIMRQLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VF
Sbjct: 332 EHPDHLKAWTYGQTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVF 391
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
E+LLLD DWA+NAGNWMWLSASAFFHQ+FRVYSPVAFGKKTD
Sbjct: 392 EQLLLDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTD 433
>gi|133754344|gb|ABO38436.1| (6-4) photolyase [Danaus plexippus]
Length = 501
Score = 357 bits (917), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 162/278 (58%), Positives = 213/278 (76%), Gaps = 2/278 (0%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDE-HLVPTMKEMGLDESSIPLCKF 59
+TYQK +S++ + + K + EC+ + + + +P+++E G++ES + CK+
Sbjct: 152 LTYQKFLSLVSDV-QVKDIIQISKGVSDECKASDYDSQGYDIPSLEEFGVNESELSECKY 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGE+E LKRL+ +A K+WV FEKP ++PNS+EPSTTVLSPY+ GCLS +LFYH+LK
Sbjct: 211 PGGESEGLKRLDVYMAKKQWVCNFEKPKSSPNSIEPSTTVLSPYISHGCLSAKLFYHKLK 270
Query: 120 KILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
++ H PPVSL+GQ+ WREFYY GS T NFDKM GN +C Q+ W N+ +L+AW+
Sbjct: 271 QVENGSKHTLPPVSLMGQLMWREFYYTAGSGTENFDKMVGNSVCTQIPWKKNDAHLKAWA 330
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
GKTGYPF+DAIMRQL+ EGWIHHLARH VACFLTRGDL++SWEEG VFE+ LLD DW+
Sbjct: 331 EGKTGYPFVDAIMRQLKQEGWIHHLARHMVACFLTRGDLWISWEEGAKVFEDFLLDYDWS 390
Query: 240 MNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLL 277
+NAGNWMWLSASAFF++++RVYSPVAFGKKTDK L +
Sbjct: 391 LNAGNWMWLSASAFFYKYYRVYSPVAFGKKTDKDGLYI 428
>gi|357624446|gb|EHJ75225.1| (6-4) photolyase [Danaus plexippus]
Length = 370
Score = 357 bits (915), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 162/278 (58%), Positives = 213/278 (76%), Gaps = 2/278 (0%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDE-HLVPTMKEMGLDESSIPLCKF 59
+TYQK +S++ + + K + EC+ + + + +P+++E G++ES + CK+
Sbjct: 21 LTYQKFLSLVSDV-QVKDIIQISKGVSDECKASDYDSQGYDIPSLEEFGVNESELSECKY 79
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGE+E LKRL+ +A K+WV FEKP ++PNS+EPSTTVLSPY+ GCLS +LFYH+LK
Sbjct: 80 PGGESEGLKRLDVYMAKKQWVCNFEKPKSSPNSIEPSTTVLSPYISHGCLSAKLFYHKLK 139
Query: 120 KILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
++ H PPVSL+GQ+ WREFYY GS T NFDKM GN +C Q+ W N+ +L+AW+
Sbjct: 140 QVENGSKHTLPPVSLMGQLMWREFYYTAGSGTENFDKMVGNSVCTQIPWKKNDAHLKAWA 199
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
GKTGYPF+DAIMRQL+ EGWIHHLARH VACFLTRGDL++SWEEG VFE+ LLD DW+
Sbjct: 200 EGKTGYPFVDAIMRQLKQEGWIHHLARHMVACFLTRGDLWISWEEGAKVFEDFLLDYDWS 259
Query: 240 MNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLL 277
+NAGNWMWLSASAFF++++RVYSPVAFGKKTDK L +
Sbjct: 260 LNAGNWMWLSASAFFYKYYRVYSPVAFGKKTDKDGLYI 297
>gi|147906624|ref|NP_001081421.1| 6-4 photolyase [Xenopus laevis]
gi|8809676|dbj|BAA97126.1| 6-4 photolyase [Xenopus laevis]
gi|213625040|gb|AAI69683.1| 6-4 photolyase [Xenopus laevis]
gi|213627768|gb|AAI69685.1| 6-4 photolyase [Xenopus laevis]
Length = 526
Score = 354 bits (908), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 171/276 (61%), Positives = 208/276 (75%), Gaps = 4/276 (1%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPT-SLPRECQG---ILHPDEHLVPTMKEMGLDESSIPL 56
+TY + +VL L PK APT ++C + +++ VPT++E+G D +
Sbjct: 148 LTYVRFQTVLAPLGPPKRPIKAPTLENMKDCHTPWKSSYDEKYGVPTLEELGQDPMKLGP 207
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGE+EAL RL+ + WV F+KP T PNSL PSTTVLSPY+KFGCLS R F+
Sbjct: 208 HLYPGGESEALSRLDLHMKRTSWVCNFKKPETEPNSLTPSTTVLSPYVKFGCLSARTFWW 267
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
++ I H+ PPVSL GQ+ WREFYY G+ PNF+KM+GN +C QVDWD N+++LE
Sbjct: 268 KIADIYQGKKHSDPPVSLHGQLLWREFYYTTGAGIPNFNKMEGNPVCVQVDWDNNKEHLE 327
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
AWS G+TGYPFIDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VFEELLLDA
Sbjct: 328 AWSEGRTGYPFIDAIMTQLRTEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDA 387
Query: 237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
DW++NAGNW+WLSASAFFHQFFRVYSPVAFGKKTDK
Sbjct: 388 DWSLNAGNWLWLSASAFFHQFFRVYSPVAFGKKTDK 423
>gi|47217864|emb|CAG02357.1| unnamed protein product [Tetraodon nigroviridis]
Length = 2050
Score = 353 bits (905), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 165/278 (59%), Positives = 203/278 (73%), Gaps = 8/278 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGIL------HPDEHLVPTMKEMGLDESSI 54
+TY + ++++ L PK AP+ + +G+ H ++ +PT++++G D + +
Sbjct: 147 LTYNSMQAIVKKLGPPKRPISAPSM--DDLKGVSTPCLEDHEKKYGIPTLEDLGHDPAGL 204
Query: 55 PLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
P KFPGGE EAL+RLE + WV FEKP T+PNSL PSTTVLSPY+ FGCLS R F
Sbjct: 205 PEEKFPGGEQEALRRLEDQMKKTSWVCNFEKPQTSPNSLSPSTTVLSPYVTFGCLSARTF 264
Query: 115 YHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKY 174
+ L + + H+ PPVSL GQ+ WREF+Y PNF+KM N +C QVDWDT+ +Y
Sbjct: 265 WWRLSDVYSGKKHSAPPVSLHGQLLWREFFYTASVGIPNFNKMADNPVCTQVDWDTDSEY 324
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
L AW +TG+PFIDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VFEELLL
Sbjct: 325 LAAWREARTGFPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLL 384
Query: 235 DADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
D DWA+NAGNW WLSASAFFHQFFRVYSPVAFGKKTDK
Sbjct: 385 DGDWALNAGNWQWLSASAFFHQFFRVYSPVAFGKKTDK 422
>gi|28279917|gb|AAH44204.1| Cry5 protein, partial [Danio rerio]
Length = 545
Score = 353 bits (905), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 168/278 (60%), Positives = 210/278 (75%), Gaps = 8/278 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHP--DEHL----VPTMKEMGLDESSI 54
MTY +L SV++++ PK APT+ + +G+ P D+H +PT++++GLD SS+
Sbjct: 174 MTYIRLQSVVKAMGHPKKPIPAPTN--EDMRGVSTPLSDDHEEKFGIPTLEDLGLDTSSL 231
Query: 55 PLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
FPGGE EAL+RL++ + WV KFEKP T+PNSL PSTTVLSPY++FGCLS R+F
Sbjct: 232 GPHLFPGGEQEALRRLDEHMERTNWVCKFEKPKTSPNSLIPSTTVLSPYVRFGCLSARIF 291
Query: 115 YHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKY 174
+ L + H+ PPVSL GQ+ WREF+Y PNF+KM+GN C QVDWD N ++
Sbjct: 292 WWRLADVYRGKTHSDPPVSLHGQLLWREFFYTTAVGIPNFNKMEGNSACVQVDWDNNPEH 351
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
L AW +TG+PFIDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VFEELLL
Sbjct: 352 LAAWREARTGFPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLL 411
Query: 235 DADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
D+DW++NAGNW WLSAS FFHQ+FRVYSP+AFGKKTDK
Sbjct: 412 DSDWSLNAGNWQWLSASTFFHQYFRVYSPIAFGKKTDK 449
>gi|348500170|ref|XP_003437646.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 522
Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 167/276 (60%), Positives = 204/276 (73%), Gaps = 4/276 (1%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPT----SLPRECQGILHPDEHLVPTMKEMGLDESSIPL 56
+TY KL ++++++ PK APT + H E+ +PT++E+GLD + +
Sbjct: 148 LTYTKLQAIVKTIGPPKRPIPAPTMDDMKDVKTPSSENHEKEYGIPTLEELGLDTAPLGE 207
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
FPGGE EAL+RL++ + +WV FEKP T+PNSL PSTTVLSPY+ FGCLSVR F+
Sbjct: 208 DLFPGGEQEALRRLDEHMKRTKWVCSFEKPQTSPNSLSPSTTVLSPYVTFGCLSVRTFWW 267
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
L ++ H+ PPVSL GQ+ WREF+Y PNF+KM+GN +C QVDWDTN YL
Sbjct: 268 RLTEVYRGNKHSDPPVSLHGQLLWREFFYTASLGIPNFNKMEGNSVCTQVDWDTNPDYLA 327
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
AW +TGYPFIDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VFE+LLLD
Sbjct: 328 AWREARTGYPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEQLLLDG 387
Query: 237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
DWA+NAGNW WLSAS FFHQ+FRVYSPVAFGKKTDK
Sbjct: 388 DWALNAGNWQWLSASTFFHQYFRVYSPVAFGKKTDK 423
>gi|432852920|ref|XP_004067451.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 521
Score = 351 bits (900), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 168/277 (60%), Positives = 203/277 (73%), Gaps = 7/277 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGIL-----HPDEHLVPTMKEMGLDESSIP 55
+TY +L ++++L PK APT + + I H E+ +P+++E+GLD SS+
Sbjct: 148 LTYNRLRDIVKALGSPKKPIPAPTV--EDMKNIAPFSEKHKPEYGIPSLEELGLDTSSLA 205
Query: 56 LCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY 115
FPGGE EAL+RL+ + WV FEKPNT+PNSL PSTTVLSPY+ FGCLS R F+
Sbjct: 206 EEIFPGGEQEALRRLDTYMQRPGWVCSFEKPNTSPNSLSPSTTVLSPYVTFGCLSARTFW 265
Query: 116 HELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L ++ H+ PPVSL GQ+ WREF+Y PNF+KM GN C QVDWD N++YL
Sbjct: 266 WRLAEVYQGKKHSDPPVSLHGQLLWREFFYTASVGIPNFNKMTGNPACTQVDWDENQEYL 325
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
AW +TG+PFIDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VFE+LLLD
Sbjct: 326 AAWREARTGFPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEKLLLD 385
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
DWA+NAGNW WLSAS FFHQFFRVYSPVAFGKKTDK
Sbjct: 386 GDWALNAGNWQWLSASTFFHQFFRVYSPVAFGKKTDK 422
>gi|18858473|ref|NP_571863.1| cryptochrome 5 [Danio rerio]
gi|8698596|dbj|BAA96852.1| 6-4 photolyase [Danio rerio]
Length = 519
Score = 350 bits (897), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 167/278 (60%), Positives = 208/278 (74%), Gaps = 8/278 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHP--DEHL----VPTMKEMGLDESSI 54
MTY +L SV++++ PK APT+ + +G+ P D+H +PT++++GLD SS+
Sbjct: 148 MTYIRLQSVVKAMGHPKKPIPAPTN--EDMRGVSTPLSDDHEEKFGIPTLEDLGLDTSSL 205
Query: 55 PLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
FPGGE EAL+RL++ + WV KFEKP T+PNSL PSTTVLSPY++FGCLS R F
Sbjct: 206 GPHLFPGGEQEALRRLDEHMERTNWVCKFEKPKTSPNSLIPSTTVLSPYVRFGCLSARTF 265
Query: 115 YHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKY 174
+ L + H+ PPVSL GQ+ WREF+Y PNF+KM+GN C QVDWD N ++
Sbjct: 266 WWRLADVYRGKTHSDPPVSLHGQLLWREFFYTTAVGIPNFNKMEGNSACVQVDWDNNPEH 325
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
L AW +TG+PFID IM QLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VFEELLL
Sbjct: 326 LAAWREARTGFPFIDTIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLL 385
Query: 235 DADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
D+DW++NAGNW WLSAS FFHQ+FRVYSP+AFGKKTDK
Sbjct: 386 DSDWSLNAGNWQWLSASTFFHQYFRVYSPIAFGKKTDK 423
>gi|183986194|gb|AAI66277.1| LOC100144974 protein [Xenopus (Silurana) tropicalis]
Length = 531
Score = 349 bits (896), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 168/276 (60%), Positives = 205/276 (74%), Gaps = 4/276 (1%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLP-RECQGI---LHPDEHLVPTMKEMGLDESSIPL 56
+TY + +VL SL PK PT ++C + + +++ VPT++E+G D +
Sbjct: 148 LTYVRFQTVLASLGPPKRPVQVPTQENMKDCCTLWKSSYNEKYGVPTLEELGQDSLKLGP 207
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGE+EAL RLE + WV F+KP T PNSL PSTTVLSPY+KFGCLS R F+
Sbjct: 208 RLYPGGESEALSRLELHMKRTTWVCNFKKPETEPNSLTPSTTVLSPYVKFGCLSARTFWW 267
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
+ +I H+ PPVSL GQ+ WREF+Y G PNF+KM+GN +C QVDW N+++L+
Sbjct: 268 RIAEIYQGKKHSDPPVSLHGQLLWREFFYTAGVGIPNFNKMEGNTVCVQVDWGNNKEHLQ 327
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
AWS G+TGYPFIDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VFEELLLDA
Sbjct: 328 AWSEGRTGYPFIDAIMTQLRTEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDA 387
Query: 237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
DW++NAGNW WLSAS FFHQFFRVYSPVAFGKKTDK
Sbjct: 388 DWSLNAGNWQWLSASTFFHQFFRVYSPVAFGKKTDK 423
>gi|187608706|ref|NP_001120012.1| uncharacterized protein LOC100144974 [Xenopus (Silurana)
tropicalis]
gi|165970470|gb|AAI58310.1| LOC100144974 protein [Xenopus (Silurana) tropicalis]
Length = 531
Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 168/276 (60%), Positives = 205/276 (74%), Gaps = 4/276 (1%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLP-RECQGI---LHPDEHLVPTMKEMGLDESSIPL 56
+TY + +VL SL PK PT ++C + + +++ VPT++E+G D +
Sbjct: 148 LTYVRFQTVLASLGPPKRPVQVPTQENMKDCCTLWKSSYNEKYGVPTLEELGQDSLKLGP 207
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGE+EAL RLE + WV F+KP T PNSL PSTTVLSPY+KFGCLS R F+
Sbjct: 208 RLYPGGESEALSRLELHMKRTTWVCNFKKPETEPNSLTPSTTVLSPYVKFGCLSARTFWW 267
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
+ +I H+ PPVSL GQ+ WREF+Y G PNF+KM+GN +C QVDW N+++L+
Sbjct: 268 RIAEIYQGKKHSDPPVSLHGQLLWREFFYTAGVGIPNFNKMEGNIVCVQVDWGNNKEHLQ 327
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
AWS G+TGYPFIDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VFEELLLDA
Sbjct: 328 AWSEGRTGYPFIDAIMTQLRTEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDA 387
Query: 237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
DW++NAGNW WLSAS FFHQFFRVYSPVAFGKKTDK
Sbjct: 388 DWSLNAGNWQWLSASTFFHQFFRVYSPVAFGKKTDK 423
>gi|223647614|gb|ACN10565.1| Cryptochrome-1 [Salmo salar]
Length = 523
Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 166/277 (59%), Positives = 205/277 (74%), Gaps = 6/277 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPT-----SLPRECQGILHPDEHLVPTMKEMGLDESSIP 55
+TY +L +++ S+ PK APT + C H + + + T++++ D S+
Sbjct: 148 LTYNRLQTLVSSIGPPKRPIPAPTCDDMKDVKTPCSE-KHEENYGISTLEKLYQDPESLT 206
Query: 56 LCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY 115
FPGGE EAL+RL++ +A KEWV FEKP T+PNSL PSTTVLSPY+ FGCLS R F+
Sbjct: 207 EELFPGGEQEALRRLDQHMARKEWVCGFEKPQTSPNSLSPSTTVLSPYMTFGCLSARTFW 266
Query: 116 HELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L + H++PPVSL GQ+ WREF+Y G PNFDKM+GN +C QVDWD+N +YL
Sbjct: 267 WSLTDVYQGKKHSQPPVSLHGQLLWREFFYTAGLGIPNFDKMEGNPVCTQVDWDSNFEYL 326
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
AW+ +TG+PFIDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VFEELLLD
Sbjct: 327 AAWAEARTGFPFIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLD 386
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
DW++NAGNW WLSAS FFHQFFRVYSP+AFGKKTDK
Sbjct: 387 GDWSLNAGNWQWLSASTFFHQFFRVYSPIAFGKKTDK 423
>gi|327282060|ref|XP_003225762.1| PREDICTED: cryptochrome-1-like [Anolis carolinensis]
Length = 530
Score = 347 bits (890), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 167/276 (60%), Positives = 203/276 (73%), Gaps = 4/276 (1%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPT--SLPRECQGIL--HPDEHLVPTMKEMGLDESSIPL 56
+TY +L +++ SL PK AP + C + H E+ P+ +E+G D +
Sbjct: 147 LTYTRLQTLVASLGPPKQPVPAPKLEDMKDCCTPVKEDHDLEYGTPSYEELGQDPKTAGP 206
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL RL+ + WV F+KP T PNSL PSTTVLSPY+KFGCLSVR+F+
Sbjct: 207 HLYPGGETEALARLDLHMKRTSWVCNFKKPETHPNSLTPSTTVLSPYVKFGCLSVRMFWW 266
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
+L ++ H+ PPVSL GQ+ WREF+Y G+ PNFD+M+ N +C QVDWD N++YL
Sbjct: 267 KLAEVYQGRKHSDPPVSLHGQLLWREFFYTAGAGIPNFDRMENNPVCVQVDWDNNQEYLR 326
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
AW G+TGYPFIDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VFEELLLDA
Sbjct: 327 AWREGQTGYPFIDAIMTQLRTEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDA 386
Query: 237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
DW++NA NW WLSASAFFHQFFRVYSPV FGKKTDK
Sbjct: 387 DWSLNAANWQWLSASAFFHQFFRVYSPVTFGKKTDK 422
>gi|301622212|ref|XP_002940429.1| PREDICTED: cryptochrome-1-like [Xenopus (Silurana) tropicalis]
Length = 531
Score = 347 bits (889), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 167/276 (60%), Positives = 203/276 (73%), Gaps = 4/276 (1%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLP-RECQGI---LHPDEHLVPTMKEMGLDESSIPL 56
+TY + +VL L PK PT ++C + + +++ VPT++E+G D +
Sbjct: 148 LTYVRFQTVLALLGPPKRPVQVPTQENMKDCCTLWKSSYNEKYGVPTLEELGQDSLKLGP 207
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGE+EAL RLE + WV F+KP T PNSL PSTTVLSPY+KFGCLS R F+
Sbjct: 208 RLYPGGESEALSRLELHMKRTTWVCNFKKPETEPNSLTPSTTVLSPYVKFGCLSARTFWW 267
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
+ I H+ PPVSL GQ+ WREF+Y G PNF+KM+GN +C QVDW N+++L+
Sbjct: 268 RIADIYQGKKHSDPPVSLHGQLLWREFFYTAGVGIPNFNKMEGNTVCVQVDWGNNKEHLQ 327
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
AWS G+TGYPFIDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEGQ VFEELLLDA
Sbjct: 328 AWSEGRTGYPFIDAIMTQLRTEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLDA 387
Query: 237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
DW++NAGNW WLSAS FFHQFFRVYSPVAFGKKTDK
Sbjct: 388 DWSLNAGNWQWLSASTFFHQFFRVYSPVAFGKKTDK 423
>gi|410912170|ref|XP_003969563.1| PREDICTED: uncharacterized protein LOC101062553 [Takifugu rubripes]
Length = 1321
Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 161/277 (58%), Positives = 200/277 (72%), Gaps = 6/277 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPT-----SLPRECQGILHPDEHLVPTMKEMGLDESSIP 55
+TY+ + ++++ L PK AP+ + C H ++ +PT+++ G + + +P
Sbjct: 147 LTYKSMQAIVKKLGPPKRPLSAPSMEDLKDVNTPCSES-HEKKYRIPTLEDFGHNLADLP 205
Query: 56 LCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY 115
+FPGGE EAL+RLE+ + WV FEKP T+PNSL PSTTVLSPY+ FGCLSVR F+
Sbjct: 206 EEQFPGGEQEALRRLEEHMKRTAWVCNFEKPKTSPNSLSPSTTVLSPYVTFGCLSVRTFW 265
Query: 116 HELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L + H+ PPVSL GQ+ WREF+Y NF+KM N +C QVDWD N +YL
Sbjct: 266 WRLSDVYEGKKHSAPPVSLHGQLLWREFFYTASVGISNFNKMVDNPVCTQVDWDINSEYL 325
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
AW +TG+PFIDA+M QLR +GWIHHLARHAVACFLTRGDL++SWEEGQ VFEELLLD
Sbjct: 326 AAWREARTGFPFIDAVMTQLRQQGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLLD 385
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
DWA+NAGNW WLSASAFFHQFFRVYSPVAFGKKTDK
Sbjct: 386 GDWALNAGNWQWLSASAFFHQFFRVYSPVAFGKKTDK 422
>gi|260800305|ref|XP_002595074.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae]
gi|229280316|gb|EEN51085.1| hypothetical protein BRAFLDRAFT_60127 [Branchiostoma floridae]
Length = 507
Score = 340 bits (871), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 165/279 (59%), Positives = 209/279 (74%), Gaps = 13/279 (4%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTS-------LPRECQGILHPDEHLVPTMKEMGLDESS 53
+TY+K + V + KP + T+ LP E L + + T++E+G+
Sbjct: 154 LTYRKFLKVYNEMGKPPKEKETATTEHFANCTLPPEA---LQDKKFDMVTLEELGM-RCD 209
Query: 54 IPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRL 113
P KF GGETEAL+RLEKSL +K+WV KFEKP T+PNSL PSTTVLSPY+ GCLS RL
Sbjct: 210 FP-AKFVGGETEALRRLEKSLEDKDWVLKFEKPKTSPNSLLPSTTVLSPYITVGCLSARL 268
Query: 114 FYHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
FYH+L KI + H++PPVSL GQ+ WREF+Y + TPNF++M+GN++C Q+ W+ N+
Sbjct: 269 FYHQLDKIYSKAKNHSQPPVSLHGQLIWREFFYTAAAHTPNFNQMEGNRVCLQIPWNKND 328
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
++L W + +TG+P+IDA M QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEEL
Sbjct: 329 EHLTRWRNAQTGFPWIDAAMTQLRKEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 388
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDADW++NAGNWMWLSASAFFHQ+FRVYSP+ FGKKTD
Sbjct: 389 LLDADWSLNAGNWMWLSASAFFHQYFRVYSPIVFGKKTD 427
>gi|156393374|ref|XP_001636303.1| predicted protein [Nematostella vectensis]
gi|156223405|gb|EDO44240.1| predicted protein [Nematostella vectensis]
Length = 533
Score = 333 bits (854), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 167/281 (59%), Positives = 206/281 (73%), Gaps = 14/281 (4%)
Query: 1 MTYQKLVSVLESLPKPK---PADD----APTSLPRECQGILHPDEHLVPTMKEMGLD--E 51
+TY+K S++ SL P PA D A + P H + VPT++E+G + E
Sbjct: 152 LTYKKFQSIVSSLGPPAAPLPAIDKKMVAGCNTPTTAN---HDKIYGVPTLEEIGQEVPE 208
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
S + +PGGETEAL+RLE + ++WV KFEKPNTAPNS+EPSTTVLSPY+ +GCLS
Sbjct: 209 ESREVL-YPGGETEALERLEVYMKKEDWVCKFEKPNTAPNSIEPSTTVLSPYMTYGCLSA 267
Query: 112 RLFYHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDT 170
RLFY L +I A H++PPVSL GQ+ WREF+ TPNF+KM GN +C QV WD
Sbjct: 268 RLFYTRLAEIYAKKKKHSQPPVSLHGQLLWREFFTTAAYKTPNFNKMVGNSLCLQVPWDQ 327
Query: 171 NEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFE 230
N++YL AW+ +TGYP+IDAIM QLR EGW+HHLARH+VACFLTRGDL++SWEEG VFE
Sbjct: 328 NDEYLAAWAEARTGYPYIDAIMTQLRREGWVHHLARHSVACFLTRGDLWISWEEGLKVFE 387
Query: 231 ELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LL+D DW +NAGNWMWLSAS+FFH +FRVYSPVAFGKKTD
Sbjct: 388 RLLIDHDWNLNAGNWMWLSASSFFHAYFRVYSPVAFGKKTD 428
>gi|326437928|gb|EGD83498.1| DNA photolyase [Salpingoeca sp. ATCC 50818]
Length = 540
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 164/282 (58%), Positives = 204/282 (72%), Gaps = 14/282 (4%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPT--SLPRECQGILHP--DEHL--VPTMKEMGL----D 50
+TY ++ L K A APT P+ + D+H VP++K+MG D
Sbjct: 152 LTYSSFGTLFRRLGKVPAALSAPTKEDFPQSSTLVRTDALDDHRFDVPSLKDMGYEWNDD 211
Query: 51 ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLS 110
E + +FPGGETEAL+R+ + L K W+ FEKP T+PN+LEPSTT LSPYLKFGCLS
Sbjct: 212 EHEV---RFPGGETEALERMRRHLQRKAWIAHFEKPKTSPNTLEPSTTGLSPYLKFGCLS 268
Query: 111 VRLFYHELKKILAT-GPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWD 169
RLFYHEL ++ A HAKPPVSL GQ+ WREF+++ G NFD+M+GN+IC Q+DWD
Sbjct: 269 PRLFYHELARVYAEYRDHAKPPVSLHGQLLWREFFHMCGYAVKNFDRMEGNRICRQIDWD 328
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
TN+ L AW + +TGYP+IDA M QLR EGW+HHLARHAVACFLTRGDLY SWE+G VF
Sbjct: 329 TNDALLAAWENARTGYPWIDACMTQLRREGWLHHLARHAVACFLTRGDLYQSWEKGAQVF 388
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+ LL+DADW +N+ NWMWLS S+FF+Q+FRVYSPVAFGKKTD
Sbjct: 389 DRLLVDADWHLNSANWMWLSCSSFFYQYFRVYSPVAFGKKTD 430
>gi|390339199|ref|XP_788938.2| PREDICTED: cryptochrome-2-like [Strongylocentrotus purpuratus]
Length = 524
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 161/279 (57%), Positives = 206/279 (73%), Gaps = 9/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGIL------HPDEHLVPTMKEMGLDESSI 54
MTYQ++V +L + P + P L G+ H +E+ VP+++++GLD +
Sbjct: 149 MTYQRMVGLLSEIGAPAIPELPP--LMANFTGVATPVKPDHDNEYGVPSLEDLGLDLEGL 206
Query: 55 PLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
+PGGETE L+R++ LA K WV FEKP T+PNSLEPSTTVLSPYLK+GCLS R F
Sbjct: 207 GPRLYPGGETEGLQRMDLHLARKSWVCGFEKPKTSPNSLEPSTTVLSPYLKWGCLSPRKF 266
Query: 115 YHELKKILATGPH-AKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEK 173
Y+ +K++ A + KPPVSL+GQ+ WREF+Y V + TPNF +M+ N IC QV WD N +
Sbjct: 267 YYAIKEVYAQQTNCTKPPVSLMGQLIWREFFYTVAAGTPNFHQMEENPICIQVPWDENPE 326
Query: 174 YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELL 233
+L AW G+TGYP+IDAIM QLR EGWIHHLARH+ ACFLTRGDL+ SW +GQ VF+E L
Sbjct: 327 FLAAWKEGRTGYPYIDAIMTQLRTEGWIHHLARHSAACFLTRGDLWQSWVKGQEVFDEWL 386
Query: 234 LDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
LDAD+++NA NWMWLS+SAFFHQ++RVYSPV FGKKTDK
Sbjct: 387 LDADYSLNAANWMWLSSSAFFHQYYRVYSPVVFGKKTDK 425
>gi|422295899|gb|EKU23198.1| cryptochrome [Nannochloropsis gaditana CCMP526]
Length = 560
Score = 330 bits (845), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 155/238 (65%), Positives = 184/238 (77%), Gaps = 3/238 (1%)
Query: 37 DEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPS 96
D+ VP + +G E+ P +PGGET AL R+++ LAN +++ FEKP T+PN+L PS
Sbjct: 226 DDFSVPDLSGIGYPETDAPTL-YPGGETAALARMQEHLANVKYIVTFEKPKTSPNALRPS 284
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILAT--GPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
TTVLSPYLK G LS RLFYH L+ ILA GPH +PPVSL+GQ+ WREF+Y+ G TPNF
Sbjct: 285 TTVLSPYLKHGALSSRLFYHSLRSILAQHKGPHTQPPVSLVGQLLWREFFYLQGHATPNF 344
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
DKM GN IC Q+ W N + L AW +TGYPFIDA M QLR EGWIHHLARHA+ACFLT
Sbjct: 345 DKMVGNPICRQIPWGKNAELLGAWEEARTGYPFIDACMTQLREEGWIHHLARHALACFLT 404
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
RGDL+ SWEEG VFE+ LLDADW++N GNW+WLSASAFFHQ+FRVYSPVAFG KTDK
Sbjct: 405 RGDLWQSWEEGARVFEKYLLDADWSVNTGNWLWLSASAFFHQYFRVYSPVAFGAKTDK 462
>gi|195148599|ref|XP_002015258.1| GL19603 [Drosophila persimilis]
gi|194107211|gb|EDW29254.1| GL19603 [Drosophila persimilis]
Length = 303
Score = 327 bits (839), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 149/203 (73%), Positives = 173/203 (85%), Gaps = 1/203 (0%)
Query: 70 LEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILA-TGPHA 128
+++SL ++ WV +FEKPNTAPNSLEPSTTVLSPYLKFGCLS R+F+ +LK IL H+
Sbjct: 1 MKESLRDELWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARIFHQQLKAILKRQSKHS 60
Query: 129 KPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFI 188
+PPVSL+GQ+ WREFYY V + PNFD+M GN C Q+ W +LEAW+HG+TGYPFI
Sbjct: 61 QPPVSLIGQLLWREFYYTVAAAEPNFDRMLGNVYCLQIPWQEQADHLEAWTHGRTGYPFI 120
Query: 189 DAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWL 248
DAIMRQLR EGWIHHLARHAVACFLTRGDL++SWE GQ VFE+LLLD DWA+NAGNWMWL
Sbjct: 121 DAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEAGQRVFEQLLLDQDWALNAGNWMWL 180
Query: 249 SASAFFHQFFRVYSPVAFGKKTD 271
SASAFFHQ+FRVYSPVAFGKKTD
Sbjct: 181 SASAFFHQYFRVYSPVAFGKKTD 203
>gi|302745164|gb|ADL62685.1| cryptochrome 5, partial [Phreatichthys andruzzii]
Length = 411
Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 155/266 (58%), Positives = 196/266 (73%), Gaps = 8/266 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGIL------HPDEHLVPTMKEMGLDESSI 54
MTY + +SV+ ++ PK APT + +G+ H +E +PT++++GLD SS+
Sbjct: 148 MTYVRFLSVVNAIGSPKKPVPAPTK--EDMKGVSTPFFEDHEEEFRIPTLEDLGLDTSSL 205
Query: 55 PLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
FPGGE EAL+RL++ + WV KFEKP T+PNS+ PSTTVLSPY++FGCLS R F
Sbjct: 206 GPNLFPGGEQEALRRLDEHMERTTWVCKFEKPQTSPNSIIPSTTVLSPYIRFGCLSARTF 265
Query: 115 YHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKY 174
+ L + H++PPVSL GQ+ WREF+Y PNF++M+GN+ C QVDWD N ++
Sbjct: 266 WWRLADVYRGKQHSEPPVSLHGQLLWREFFYTTAVGIPNFNRMEGNRHCVQVDWDNNPEH 325
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
L AW +TG+PFIDAIM QL EGWIHHLARHAVACFLTRGDL++SWEEGQ VFEELLL
Sbjct: 326 LAAWREARTGFPFIDAIMTQLCQEGWIHHLARHAVACFLTRGDLWISWEEGQKVFEELLL 385
Query: 235 DADWAMNAGNWMWLSASAFFHQFFRV 260
DADW++NAGNW WLSASAFFHQFFRV
Sbjct: 386 DADWSLNAGNWQWLSASAFFHQFFRV 411
>gi|27882257|gb|AAH44385.1| Cry4 protein [Danio rerio]
Length = 579
Score = 320 bits (819), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 157/274 (57%), Positives = 196/274 (71%), Gaps = 5/274 (1%)
Query: 1 MTYQKLVSVLESLPKP-KPADDAPTSLPRECQGILHPDE-HLVPTMKEMGLDESSIPLCK 58
+TY+K + VL L +P KPA D + C + D + VP++ ++GL + L
Sbjct: 170 LTYKKFLHVLSVLGEPEKPARDVSIEDFQRCVTPVDVDRVYAVPSLADLGLQVEAEVL-- 227
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
+PGGE+ AL+RLEK ++ WV F KP T PNSL PSTT LSPYL GCLSVR FYH L
Sbjct: 228 WPGGESHALQRLEKHFQSQGWVANFSKPRTIPNSLLPSTTGLSPYLSLGCLSVRTFYHRL 287
Query: 119 KKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEA 177
I A H+ PPVSL GQ+ WREF+Y V S TPNF KM+GN IC Q+DW + + LE
Sbjct: 288 NSIYAQSKNHSLPPVSLQGQVLWREFFYTVASATPNFTKMEGNSICLQIDWYHDPERLEK 347
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W +TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL+++WEEG VFEE LLDAD
Sbjct: 348 WRTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWITWEEGMKVFEEFLLDAD 407
Query: 238 WAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+++NAGNWMWLSASAFFH++ R++ PV FG++TD
Sbjct: 408 YSVNAGNWMWLSASAFFHKYTRIFCPVRFGRRTD 441
>gi|197246983|gb|AAI64413.1| Cry4 protein [Danio rerio]
Length = 558
Score = 319 bits (818), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 157/274 (57%), Positives = 196/274 (71%), Gaps = 5/274 (1%)
Query: 1 MTYQKLVSVLESLPKP-KPADDAPTSLPRECQGILHPDE-HLVPTMKEMGLDESSIPLCK 58
+TY+K + VL L +P KPA D + C + D + VP++ ++GL + L
Sbjct: 149 LTYKKFLHVLSVLGEPEKPARDVSIEDFQRCVTPVDVDRVYAVPSLADLGLQVEAEVL-- 206
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
+PGGE+ AL+RLEK ++ WV F KP T PNSL PSTT LSPYL GCLSVR FYH L
Sbjct: 207 WPGGESHALQRLEKHFQSQGWVANFSKPRTIPNSLLPSTTGLSPYLSLGCLSVRTFYHRL 266
Query: 119 KKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEA 177
I A H+ PPVSL GQ+ WREF+Y V S TPNF KM+GN IC Q+DW + + LE
Sbjct: 267 NSIYAQSKNHSLPPVSLQGQVLWREFFYTVASATPNFTKMEGNSICLQIDWYHDPERLEK 326
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W +TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL+++WEEG VFEE LLDAD
Sbjct: 327 WRTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWITWEEGMKVFEEFLLDAD 386
Query: 238 WAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+++NAGNWMWLSASAFFH++ R++ PV FG++TD
Sbjct: 387 YSVNAGNWMWLSASAFFHKYTRIFCPVRFGRRTD 420
>gi|133754342|gb|ABO38435.1| cryptochrome 2 [Antheraea pernyi]
Length = 788
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 147/276 (53%), Positives = 195/276 (70%), Gaps = 6/276 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSL-----PRECQGILHPDEHLVPTMKEMGLDESSIP 55
+TY + +++ S+P P+PA+ AP S+ + + H D VPT++E+G + +
Sbjct: 179 LTYHQFQALIASMPPPQPAE-APISIETLNGAKTPVSVDHDDRFGVPTLEELGFETEDLK 237
Query: 56 LCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY 115
+ GGE+EAL RL++ L K WV F +P P SL S T LSPYL+FGCLS RLFY
Sbjct: 238 PPMWMGGESEALARLDRHLERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFY 297
Query: 116 HELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
++L ++ +PP+SL GQI WREF+Y + PNFD+M+GN IC Q+ W+ N++ L
Sbjct: 298 YQLTELYKKIKRVRPPLSLHGQILWREFFYCAATRNPNFDRMEGNPICVQIPWEKNQEAL 357
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W++G+TGYP+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VF+EL+LD
Sbjct: 358 SKWANGQTGYPWIDAIMIQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELMLD 417
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG WMWLS S+FF QFF Y PV FG+KTD
Sbjct: 418 ADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKTD 453
>gi|18858471|ref|NP_571862.1| cryptochrome 4 [Danio rerio]
gi|8698594|dbj|BAA96851.1| cryptochrome 4 [Danio rerio]
Length = 558
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 157/274 (57%), Positives = 194/274 (70%), Gaps = 5/274 (1%)
Query: 1 MTYQKLVSVLESLPKP-KPADDAPTSLPRECQGILHPDE-HLVPTMKEMGLDESSIPLCK 58
+TY+K + VL L +P KPA D + C + D + VP++ +GL + L
Sbjct: 149 LTYKKFLHVLSVLGEPEKPARDVSIEDFQRCVTPVDVDRVYAVPSLAHLGLQVEAEVL-- 206
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
+PGGE+ AL+RLEK ++ WV F KP T PNSL PSTT LSPYL GCLSVR FYH L
Sbjct: 207 WPGGESHALQRLEKHFQSQGWVANFSKPRTIPNSLLPSTTGLSPYLSLGCLSVRTFYHRL 266
Query: 119 KKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEA 177
I A H+ PPVSL GQ+ WREF+Y V S TPNF KM+GN IC Q+DW + + LE
Sbjct: 267 NCIYAQSKNHSLPPVSLQGQVLWREFFYTVASATPNFTKMEGNSICLQIDWYHDPERLEK 326
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W +TG+P+IDAIM QL EGWIHHLARHAVACFLTRGDL++SWEEG VFEE LLDAD
Sbjct: 327 WRTAQTGFPWIDAIMTQLLQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEFLLDAD 386
Query: 238 WAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+++NAGNWMWLSASAFFH++ R++ PV FG++TD
Sbjct: 387 YSVNAGNWMWLSASAFFHKYTRIFCPVRFGRRTD 420
>gi|355681092|gb|AER96734.1| cryptochrome 1 [Mustela putorius furo]
Length = 449
Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 149/273 (54%), Positives = 193/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D +P +
Sbjct: 16 FQTLISKME--PLEMPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW 73
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S+T LSPYL+FGCLS RLFY +L
Sbjct: 74 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASSTGLSPYLRFGCLSCRLFYFKLT 133
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 134 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 193
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 194 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 253
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 254 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 286
>gi|61816948|gb|AAX56342.1| 6-4 photolyase [Dunaliella salina]
Length = 600
Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 161/277 (58%), Positives = 196/277 (70%), Gaps = 7/277 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTS-LPRECQGI--LHPDEHLVPTMKEMGLDESSIPLC 57
+T Q +++ + P A APT+ LP + + E VPT +EMG E+ P
Sbjct: 196 LTMQAFEKLVDRVGHPLTALPAPTARLPPVDVSLPGIKDAEVGVPTWQEMGFKEA--PTA 253
Query: 58 KFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSL-EPSTTVLSPYLKFGCLSVRLFYH 116
F GGETEALKRLE + + +W FEKP+T P++ EPSTT LSPYLKFGCLS R F+
Sbjct: 254 IFKGGETEALKRLEHYMKDTKWXASFEKPSTDPSAFTEPSTTALSPYLKFGCLSARFFHQ 313
Query: 117 ELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L + P H++PP+SL GQ+ WREF+Y +GS TPNFD++ GN IC Q+ WDTN L
Sbjct: 314 RLLDVYRLHPKHSQPPMSLRGQLLWREFFYTLGSHTPNFDRIAGNPICRQITWDTNPALL 373
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
+AW G TGYP+IDA M QLR GW+HHLARH+VACFLTRGDLYLSWE G+ VFEELLLD
Sbjct: 374 KAWRDGATGYPWIDAAMTQLREWGWMHHLARHSVACFLTRGDLYLSWESGKEVFEELLLD 433
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
AD+ +NA NWMWLSASAFF Q+FRVYSPV FGKK DK
Sbjct: 434 ADYFINAANWMWLSASAFFAQYFRVYSPVVFGKKYDK 470
>gi|410965445|ref|XP_003989258.1| PREDICTED: cryptochrome-1 [Felis catus]
Length = 587
Score = 314 bits (804), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 150/273 (54%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + L +C L H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISKME--PLEIPVETITSELIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|404312667|ref|NP_001017311.2| cryptochrome 1 (photolyase-like) [Xenopus (Silurana) tropicalis]
gi|170287804|gb|AAI61038.1| Unknown (protein for MGC:184712) [Xenopus (Silurana) tropicalis]
Length = 618
Score = 313 bits (803), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 149/273 (54%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + +C + H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISKME--PLEIPVETITAEVMEKCTTPVLDDHDEKYGVPSLEELGFDTEGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL STT LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|6681031|ref|NP_031797.1| cryptochrome-1 [Mus musculus]
gi|81882230|sp|P97784.1|CRY1_MOUSE RecName: Full=Cryptochrome-1
gi|5081813|gb|AAD39548.1|AF156986_1 cryptochrome 1 [Mus musculus]
gi|1816439|dbj|BAA19175.1| photolyase/blue-light receptor homolog [Mus musculus]
gi|18380944|gb|AAH22174.1| Cryptochrome 1 (photolyase-like) [Mus musculus]
gi|55716088|gb|AAH85499.1| Cryptochrome 1 (photolyase-like) [Mus musculus]
gi|74194028|dbj|BAE36931.1| unnamed protein product [Mus musculus]
gi|148689469|gb|EDL21416.1| cryptochrome 1 (photolyase-like) [Mus musculus]
Length = 606
Score = 313 bits (803), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 151/273 (55%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q LVS +E P PAD + + +C L H +++ VP+++E+G D + +
Sbjct: 153 FQTLVSKME--PLEMPADTITSDVIGKCMTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|291290511|dbj|BAI82611.1| cryptochrome 1 [Xenopus (Silurana) tropicalis]
Length = 605
Score = 313 bits (803), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 149/273 (54%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + +C + H +++ VP+++E+G D +P +
Sbjct: 146 FQTLISKME--PLEIPVETITAEVMEKCTTPVLDDHDEKYGVPSLEELGFDTEGLPSAVW 203
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL STT LSPYL+FGCLS RLFY +L
Sbjct: 204 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASTTGLSPYLRFGCLSCRLFYFKLT 263
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 264 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKW 323
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 324 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 383
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 384 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 416
>gi|80861398|ref|NP_942045.2| cryptochrome-1 [Rattus norvegicus]
gi|118572250|sp|Q32Q86.1|CRY1_RAT RecName: Full=Cryptochrome-1
gi|78395116|gb|AAI07678.1| Cryptochrome 1 (photolyase-like) [Rattus norvegicus]
Length = 588
Score = 313 bits (803), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 151/273 (55%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q LVS +E P PAD + + +C L H +++ VP+++E+G D + +
Sbjct: 153 FQTLVSKME--PLEMPADTITSDVIGKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|149067374|gb|EDM17107.1| cryptochrome 1 (photolyase-like) [Rattus norvegicus]
Length = 555
Score = 313 bits (803), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 151/273 (55%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q LVS +E P PAD + + +C L H +++ VP+++E+G D + +
Sbjct: 153 FQTLVSKME--PLEMPADTITSDVIGKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|33333729|gb|AAQ11980.1| cryptochrome 1 [Rattus norvegicus]
Length = 588
Score = 313 bits (803), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 151/273 (55%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q LVS +E P PAD + + +C L H +++ VP+++E+G D + +
Sbjct: 153 FQTLVSKME--PLEMPADTITSDVIGKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|147901097|ref|NP_001081129.1| cryptochrome 1 (photolyase-like) [Xenopus laevis]
gi|47938667|gb|AAH72120.1| Cry1-A protein [Xenopus laevis]
Length = 616
Score = 313 bits (802), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 148/276 (53%), Positives = 193/276 (69%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESL-PKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P P + + +C + H +++ VP+++E+G D +P
Sbjct: 148 LTYKRFQTLISKMDPLEIPVETITAEVMEKCTTPVSDDHDEKYGVPSLEELGFDTEGLPS 207
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL RLE+ L K WV FE+P NSL STT LSPYL+FGCLS RLFY
Sbjct: 208 AVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASTTGLSPYLRFGCLSCRLFYF 267
Query: 117 ELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
+L + ++ PP+SL GQ+ WREF+Y ++ P FDKM GN IC Q+ WD N + L
Sbjct: 268 KLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMDGNPICVQIPWDRNPEAL 327
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLD
Sbjct: 328 AKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 387
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG+WMWLS S+FF QFF Y PV FGK+TD
Sbjct: 388 ADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGKRTD 423
>gi|417403044|gb|JAA48347.1| Putative deoxyribodipyrimidine photolyase/cryptochrome [Desmodus
rotundus]
Length = 587
Score = 313 bits (802), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 149/273 (54%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|73969270|ref|XP_862753.1| PREDICTED: cryptochrome-1 isoform 2 [Canis lupus familiaris]
Length = 587
Score = 313 bits (802), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 149/273 (54%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVVEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|193211372|ref|NP_001123207.1| cryptochrome-1 [Ovis aries]
gi|152940829|gb|ABS44879.1| cryptochrome 1 [Ovis aries]
Length = 587
Score = 313 bits (802), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 149/273 (54%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVMEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|157427956|ref|NP_001098885.1| cryptochrome-1 [Bos taurus]
gi|157278893|gb|AAI34487.1| CRY1 protein [Bos taurus]
Length = 587
Score = 313 bits (802), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 149/273 (54%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|311255201|ref|XP_003126127.1| PREDICTED: cryptochrome-1 [Sus scrofa]
Length = 588
Score = 313 bits (801), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 149/273 (54%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|301784579|ref|XP_002927704.1| PREDICTED: cryptochrome-1-like [Ailuropoda melanoleuca]
gi|281347021|gb|EFB22605.1| hypothetical protein PANDA_017512 [Ailuropoda melanoleuca]
Length = 587
Score = 313 bits (801), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 149/273 (54%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|296487421|tpg|DAA29534.1| TPA: cryptochrome 1 (photolyase-like) [Bos taurus]
Length = 543
Score = 313 bits (801), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 149/273 (54%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|326912139|ref|XP_003202411.1| PREDICTED: cryptochrome-1 [Meleagris gallopavo]
Length = 611
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + ++C + H +++ VP+++E+G D +P +
Sbjct: 143 FQTLISRME--PLEMPVETITPEVMQKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVW 200
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 201 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 260
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 261 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 320
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 321 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 380
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 381 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 413
>gi|15341190|gb|AAK94665.1| cryptochrome 1 [Xenopus laevis]
Length = 616
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 148/276 (53%), Positives = 193/276 (69%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESL-PKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P P + + +C + H +++ VP+++E+G D +P
Sbjct: 148 LTYKRFQTLISKMDPLEIPVETITAEVMEKCTTPVSDDHDEKYGVPSLEELGFDTEGLPS 207
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL RLE+ L K WV FE+P NSL STT LSPYL+FGCLS RLFY
Sbjct: 208 AVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASTTGLSPYLRFGCLSCRLFYF 267
Query: 117 ELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
+L + ++ PP+SL GQ+ WREF+Y ++ P FDKM GN IC Q+ WD N + L
Sbjct: 268 KLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPCFDKMDGNPICVQIPWDRNPEAL 327
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLD
Sbjct: 328 AKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 387
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG+WMWLS S+FF QFF Y PV FGK+TD
Sbjct: 388 ADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGKRTD 423
>gi|82091801|sp|Q6ZZY0.1|CRY1_SYLBO RecName: Full=Cryptochrome-1
gi|45535501|emb|CAG14931.1| cryptochrome 1 [Sylvia borin]
Length = 620
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + ++C + H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISRME--PLEMPVETITPEVMKKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|45383636|ref|NP_989576.1| cryptochrome-1 [Gallus gallus]
gi|82104700|sp|Q8QG61.1|CRY1_CHICK RecName: Full=Cryptochrome-1
gi|19550963|gb|AAK61385.1| cryptochrome 1 [Gallus gallus]
Length = 621
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + ++C + H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISRME--PLEMPVETITPEVMQKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|321471119|gb|EFX82092.1| CRY-M [Daphnia pulex]
Length = 553
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 152/278 (54%), Positives = 193/278 (69%), Gaps = 10/278 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPT--SLPRECQGILHPDEHL-----VPTMKEMGLDESS 53
+TY++ +++ S+ P P + T S+ R G DE + VPT++E+G D
Sbjct: 156 LTYRQFQNIIASVDAPPPPESDITFESIGR---GYTPMDESMDDRFSVPTLEELGFDTDG 212
Query: 54 IPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRL 113
+ + GGETEAL RLE+ L K WV F +P P SL S T LSPYL+FGCLSVRL
Sbjct: 213 LMPAVWHGGETEALTRLERHLERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSVRL 272
Query: 114 FYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEK 173
F+ +L + A+PP+SL GQ+ WREF+Y ++ PNFDKM GN IC Q+ WD+N +
Sbjct: 273 FHQQLTNLYKKIKKAQPPLSLHGQVLWREFFYCAATNNPNFDKMIGNPICVQIPWDSNAE 332
Query: 174 YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELL 233
L W++G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELL
Sbjct: 333 ALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELL 392
Query: 234 LDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LDADW++NAG WMWLS S+FFHQFF Y PV FG+K D
Sbjct: 393 LDADWSVNAGTWMWLSCSSFFHQFFHCYCPVRFGRKVD 430
>gi|354486342|ref|XP_003505340.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-1-like [Cricetulus
griseus]
Length = 583
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 150/273 (54%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q LVS +E P PA+ + + +C L H +++ VP+++E+G D + +
Sbjct: 149 FQTLVSKME--PLEMPAETITSDVIGKCMTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW 206
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 207 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 266
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 267 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 326
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 327 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 386
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 387 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 419
>gi|449276417|gb|EMC84949.1| Cryptochrome-1, partial [Columba livia]
Length = 570
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 149/273 (54%), Positives = 191/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
YQ L+S +E P P + + +C + H +++ VP+++E+G D +P +
Sbjct: 103 YQTLISRME--PLEMPVETITPEVMEKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVW 160
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 161 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 220
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 221 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 280
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 281 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGVKVFEELLLDADW 340
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 341 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 373
>gi|449482006|ref|XP_002196554.2| PREDICTED: cryptochrome-1 [Taeniopygia guttata]
Length = 715
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + ++C + H +++ VP+++E+G D +P +
Sbjct: 248 FQTLISRME--PLEMPVETITPEVMKKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVW 305
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 306 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 365
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 366 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 425
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 426 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 485
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 486 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 518
>gi|110962429|gb|ABH03083.1| cryptochrome 1b [Sylvia borin]
Length = 587
Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + ++C + H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISRME--PLEMPVETITPEVMKKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|327272394|ref|XP_003220970.1| PREDICTED: cryptochrome-1-like isoform 1 [Anolis carolinensis]
Length = 621
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 191/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + +C + H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISRME--PLEIPVETITAEVMSKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|344266586|ref|XP_003405361.1| PREDICTED: cryptochrome-1-like [Loxodonta africana]
Length = 583
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/273 (54%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVIGKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|345326794|ref|XP_001508613.2| PREDICTED: cryptochrome-1-like [Ornithorhynchus anatinus]
Length = 721
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 147/276 (53%), Positives = 192/276 (69%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESL-PKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P P + + +C L H +++ VP+++E+G D +P
Sbjct: 253 LTYKRFQTLISRMDPLAMPVETITAEVMGKCMTPLSDDHDEKYGVPSLEELGFDTDGLPS 312
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY
Sbjct: 313 AVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYF 372
Query: 117 ELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
+L + ++ PP+SL GQ+ WREF+Y + P FDKM+GN IC Q+ WD N + L
Sbjct: 373 KLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATSNPRFDKMEGNPICVQIPWDRNPEAL 432
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLD
Sbjct: 433 AKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 492
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 493 ADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 528
>gi|426374041|ref|XP_004053891.1| PREDICTED: cryptochrome-1 [Gorilla gorilla gorilla]
Length = 583
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 191/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D + +
Sbjct: 153 FQTLISKME--PLETPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|327272396|ref|XP_003220971.1| PREDICTED: cryptochrome-1-like isoform 2 [Anolis carolinensis]
Length = 589
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 191/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + +C + H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISRME--PLEIPVETITAEVMSKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|334348060|ref|XP_003342014.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-1-like [Monodelphis
domestica]
Length = 585
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/273 (54%), Positives = 191/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + +C L H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISKME--PLATPVETITPEVMHKCVTPLSDEHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|242060916|ref|XP_002451747.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor]
gi|241931578|gb|EES04723.1| hypothetical protein SORBIDRAFT_04g007140 [Sorghum bicolor]
Length = 550
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 157/275 (57%), Positives = 201/275 (73%), Gaps = 8/275 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHL-VPTMKEMG-LDESSIPLCK 58
+TYQ VS+ P P + + LP G E L VPT++E+G +D S +
Sbjct: 170 LTYQSFVSIAGE--PPDPIMEEYSELP--PLGDTGEYELLPVPTVEELGYVDISEEEIPP 225
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTTVLSPYLKFGCLSVRLFYHE 117
F GGETEAL+R+++SL NKEWV KFEKP P++ L+PSTTVLSPYLKFGCLS R FYH
Sbjct: 226 FRGGETEALRRMKESLQNKEWVAKFEKPKGDPSAFLKPSTTVLSPYLKFGCLSSRYFYHC 285
Query: 118 LKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
++ + + H KPPVSL+GQ+ WR+F+Y V TPNFD+MKGNKIC Q+ W NE+
Sbjct: 286 IQDVYKSVRNHTKPPVSLIGQLLWRDFFYTVSYGTPNFDRMKGNKICKQIPWSENEELFV 345
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
AW G+TGYP+IDAIM QLR GW+HHLARH+VACFLTRGD+++ WE+G+ VFE LL+D+
Sbjct: 346 AWRDGQTGYPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDMFIHWEKGRDVFERLLIDS 405
Query: 237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DWA+N GNWMWLS S+FF+Q+ R+YSP+ FGKK D
Sbjct: 406 DWAINNGNWMWLSCSSFFYQYHRIYSPITFGKKYD 440
>gi|395819912|ref|XP_003783322.1| PREDICTED: cryptochrome-1 [Otolemur garnettii]
Length = 587
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISKME--PLEIPVETITSEIIEKCTTPLFDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y P +FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPASFGRRTD 423
>gi|399220399|gb|AFP33463.1| cryptochrome 2 [Dicentrarchus labrax]
Length = 668
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 147/276 (53%), Positives = 193/276 (69%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ L P+ P + +L C + H D++ VP+++E+G D +P
Sbjct: 148 LTYKRFQTLISRLDPPEMPVETLSDTLMGRCVTPISEDHGDKYGVPSLEELGFDIEGLPT 207
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL R+E+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY
Sbjct: 208 AVWPGGETEALTRIERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYF 267
Query: 117 ELKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
+L + ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC ++ WD N + L
Sbjct: 268 KLTDLYRKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVRIPWDKNPEAL 327
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ KTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLD
Sbjct: 328 AKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 387
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 388 ADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|116256289|gb|ABJ90474.1| cryptochrome 1 [Equus caballus]
Length = 378
Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 190/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D +P +
Sbjct: 100 FQTLISKME--PLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW 157
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S LSPYL+FGCLS RLFY L
Sbjct: 158 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPAGLSPYLRFGCLSCRLFYFRLT 217
Query: 120 KIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 218 DLYRKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 277
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 278 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 337
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 338 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 370
>gi|348553110|ref|XP_003462370.1| PREDICTED: cryptochrome-1-like [Cavia porcellus]
Length = 675
Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 149/273 (54%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVVEKCVTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|332021530|gb|EGI61895.1| Cryptochrome-1 [Acromyrmex echinatior]
Length = 671
Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 152/278 (54%), Positives = 191/278 (68%), Gaps = 10/278 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGIL-------HPDEHLVPTMKEMGLDESS 53
+TY + +V+ + P+P APT + C G H D + VPT++E+G D S
Sbjct: 168 LTYHQFQNVVAGMDPPEPP--APT-VTAACIGSAYTPLKDDHDDHYGVPTLEELGFDTES 224
Query: 54 IPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRL 113
+ + GGE+EAL RLE+ L K WV F +P P SL PS T LSPYL+FGCLS RL
Sbjct: 225 LLPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTGLSPYLRFGCLSTRL 284
Query: 114 FYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEK 173
FY++L + A PP+SL GQ+ WREF+Y + PNFDKM+GN IC Q+ WD N +
Sbjct: 285 FYYQLTDLYKKIKKAVPPLSLHGQLLWREFFYCAATKNPNFDKMQGNPICVQIPWDKNVE 344
Query: 174 YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELL 233
L W++G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VF+ELL
Sbjct: 345 ALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELL 404
Query: 234 LDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LDADW++NAG WMWLS S+FF QFF Y PV FG+K D
Sbjct: 405 LDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKAD 442
>gi|149742994|ref|XP_001499263.1| PREDICTED: cryptochrome-1 [Equus caballus]
Length = 587
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 190/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S LSPYL+FGCLS RLFY L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPAGLSPYLRFGCLSCRLFYFRLT 270
Query: 120 KIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYRKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|390979651|ref|NP_001070765.2| cryptochrome 1a [Danio rerio]
gi|141796163|gb|AAI34839.1| Cry1a protein [Danio rerio]
gi|190337408|gb|AAI63354.1| Cryptochrome 1a [Danio rerio]
Length = 619
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 149/273 (54%), Positives = 190/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E++ P A P C L H ++ VP+++E+G D + +
Sbjct: 153 FQTLISRMEAVETPAETITAEVMGP--CTTPLSDDHDEKFGVPSLEELGFDTEGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYRKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV+FG++TD
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVSFGRRTD 423
>gi|115528160|gb|AAI24763.1| Cryptochrome 1a [Danio rerio]
Length = 619
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 149/273 (54%), Positives = 190/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E++ P A P C L H ++ VP+++E+G D + +
Sbjct: 153 FQTLISRMEAVETPAETITAEVMGP--CTTPLSDDHDEKFGVPSLEELGFDTEGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYRKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV+FG++TD
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVSFGRRTD 423
>gi|297692835|ref|XP_002823736.1| PREDICTED: cryptochrome-1 [Pongo abelii]
Length = 586
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 191/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D + +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|4758072|ref|NP_004066.1| cryptochrome-1 [Homo sapiens]
gi|332241714|ref|XP_003270025.1| PREDICTED: cryptochrome-1 [Nomascus leucogenys]
gi|74735764|sp|Q16526.1|CRY1_HUMAN RecName: Full=Cryptochrome-1
gi|1304107|dbj|BAA12068.1| photolyase [Homo sapiens]
gi|1313902|dbj|BAA12710.1| photolyase homolog [Homo sapiens]
gi|22539647|gb|AAH30519.1| Cryptochrome 1 (photolyase-like) [Homo sapiens]
gi|119618201|gb|EAW97795.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|119618203|gb|EAW97797.1| cryptochrome 1 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|121647009|gb|ABM64209.1| photolyase-like cryptochrome 1 [Homo sapiens]
gi|158254536|dbj|BAF83241.1| unnamed protein product [Homo sapiens]
gi|261858374|dbj|BAI45709.1| cryptochrome 1 [synthetic construct]
gi|325464291|gb|ADZ15916.1| cryptochrome 1 (photolyase-like) [synthetic construct]
Length = 586
Score = 310 bits (794), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 191/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D + +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|302564841|ref|NP_001181088.1| cryptochrome-1 [Macaca mulatta]
gi|402887532|ref|XP_003907145.1| PREDICTED: cryptochrome-1 [Papio anubis]
gi|355564646|gb|EHH21146.1| hypothetical protein EGK_04148 [Macaca mulatta]
gi|355786488|gb|EHH66671.1| hypothetical protein EGM_03711 [Macaca fascicularis]
gi|380809804|gb|AFE76777.1| cryptochrome-1 [Macaca mulatta]
gi|383415927|gb|AFH31177.1| cryptochrome-1 [Macaca mulatta]
gi|384945408|gb|AFI36309.1| cryptochrome-1 [Macaca mulatta]
Length = 586
Score = 310 bits (794), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 191/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D + +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|403275987|ref|XP_003929699.1| PREDICTED: cryptochrome-1 [Saimiri boliviensis boliviensis]
Length = 586
Score = 310 bits (794), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 191/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D + +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|296212792|ref|XP_002752992.1| PREDICTED: cryptochrome-1 [Callithrix jacchus]
Length = 586
Score = 310 bits (794), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 191/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D + +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|114646730|ref|XP_509339.2| PREDICTED: cryptochrome-1 [Pan troglodytes]
gi|397525251|ref|XP_003832588.1| PREDICTED: cryptochrome-1 [Pan paniscus]
gi|410216796|gb|JAA05617.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410256668|gb|JAA16301.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410295158|gb|JAA26179.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
gi|410354849|gb|JAA44028.1| cryptochrome 1 (photolyase-like) [Pan troglodytes]
Length = 586
Score = 310 bits (794), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 191/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D + +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|307611921|ref|NP_001182627.1| cryptochrome 2 [Bombyx mori]
gi|306416110|gb|ADM86933.1| cryptochrome 2 [Bombyx mori]
gi|306416114|gb|ADM86935.1| cryptochrome 2 [Bombyx mori]
Length = 730
Score = 310 bits (794), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 147/277 (53%), Positives = 190/277 (68%), Gaps = 8/277 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGIL------HPDEHLVPTMKEMGLDESSI 54
+TY + +++ S+P P PA+ T P+ G H D VPT++E+G + +
Sbjct: 178 LTYHQFQALIASMPPPPPAEV--TITPQMLNGATTPITDNHDDRFGVPTLEELGFETEGL 235
Query: 55 PLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
+ GGE+EAL RLE+ L K WV F +P P SL S T LSPYL+FGCLS RLF
Sbjct: 236 KPPIWIGGESEALARLERHLERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLF 295
Query: 115 YHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKY 174
Y++L ++ +PP+SL GQI WREF+Y + PNFD+M+GN IC Q+ W+ N+
Sbjct: 296 YYQLTELYKRVKRVRPPLSLHGQILWREFFYCAATRNPNFDRMEGNPICVQIPWEKNQDA 355
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
L W++G+TGYP+IDAIM QLR EGWIHHL+RHAVACFLTRGDL++SWEEG VF+ELLL
Sbjct: 356 LAKWANGQTGYPWIDAIMIQLREEGWIHHLSRHAVACFLTRGDLWISWEEGMKVFDELLL 415
Query: 235 DADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DADW++NAG WMW S S+FF QFF Y PV FG+KTD
Sbjct: 416 DADWSVNAGMWMWFSCSSFFQQFFHCYCPVRFGRKTD 452
>gi|340720203|ref|XP_003398531.1| PREDICTED: cryptochrome-1-like [Bombus terrestris]
Length = 574
Score = 310 bits (793), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 150/278 (53%), Positives = 190/278 (68%), Gaps = 10/278 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGIL-------HPDEHLVPTMKEMGLDESS 53
+TY + +V+ S+ P+P+ TS C G H D + VPT++E+G D
Sbjct: 166 LTYHQFQNVVASMDPPEPSVSTVTS---ACIGSAYTPLKEDHDDHYGVPTLEELGFDTEG 222
Query: 54 IPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRL 113
+ + GGE+EAL RLE+ L K WV F +P P SL PS T LSPYL+FGCLS RL
Sbjct: 223 LLPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTGLSPYLRFGCLSTRL 282
Query: 114 FYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEK 173
FY++L + A PP+SL GQ+ WREF+Y + PNFD+M+GN IC Q+ WD N +
Sbjct: 283 FYYQLTDLYKKIKKAVPPLSLHGQLLWREFFYCAATKNPNFDRMQGNPICVQIPWDKNVE 342
Query: 174 YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELL 233
L W++G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VF+ELL
Sbjct: 343 ALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELL 402
Query: 234 LDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LDADW++NAG WMWLS S+FF QFF Y PV FG+K D
Sbjct: 403 LDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKAD 440
>gi|387015300|gb|AFJ49769.1| Cryptochrome-1-like [Crotalus adamanteus]
Length = 622
Score = 310 bits (793), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 190/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + C + H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISRME--PLEMPVETITAEVMSTCITPVSDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGVKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|75048080|sp|Q8WP19.1|CRY1_MACFA RecName: Full=Cryptochrome-1
gi|17026058|dbj|BAB72089.1| cryptochrome 1 [Macaca fascicularis]
Length = 586
Score = 310 bits (793), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 191/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D + +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKRNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|8698584|dbj|BAA96846.1| cryptochrome 1a [Danio rerio]
Length = 556
Score = 310 bits (793), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 149/273 (54%), Positives = 190/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E++ P A P C L H ++ VP+++E+G D + +
Sbjct: 153 FQTLISRMEAVVTPAETITAEVMGP--CTTPLSDDHDEKFGVPSLEELGFDTEGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYRKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV+FG++TD
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVSFGRRTD 423
>gi|348517126|ref|XP_003446086.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 800
Score = 309 bits (792), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 147/276 (53%), Positives = 193/276 (69%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ L P+ P + +L C + H D++ VP+++E+G D +P
Sbjct: 148 LTYKRFQTLISRLDPPEMPVEMLTDTLMGRCVTPVSEDHGDKYGVPSLEELGFDTEGLPS 207
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL R+E+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY
Sbjct: 208 AVWPGGETEALTRIERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYF 267
Query: 117 ELKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
+L + ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC ++ WD N + L
Sbjct: 268 KLTDLYRKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVRIPWDKNPEAL 327
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ KTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLD
Sbjct: 328 AKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 387
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 388 ADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|350420124|ref|XP_003492407.1| PREDICTED: cryptochrome-1 [Bombus impatiens]
gi|129593762|gb|ABO31112.1| cryptochrome 2 protein [Bombus impatiens]
Length = 574
Score = 309 bits (792), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 150/278 (53%), Positives = 190/278 (68%), Gaps = 10/278 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGIL-------HPDEHLVPTMKEMGLDESS 53
+TY + +V+ S+ P+P+ TS C G H D + VPT++E+G D
Sbjct: 166 LTYHQFQNVVASMDPPEPSVPTVTS---ACIGSAYTPLKEDHDDHYGVPTLEELGFDTEG 222
Query: 54 IPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRL 113
+ + GGE+EAL RLE+ L K WV F +P P SL PS T LSPYL+FGCLS RL
Sbjct: 223 LLPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTGLSPYLRFGCLSTRL 282
Query: 114 FYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEK 173
FY++L + A PP+SL GQ+ WREF+Y + PNFD+M+GN IC Q+ WD N +
Sbjct: 283 FYYQLTDLYKKIKKAVPPLSLHGQLLWREFFYCAATKNPNFDRMQGNPICVQIPWDKNVE 342
Query: 174 YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELL 233
L W++G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VF+ELL
Sbjct: 343 ALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELL 402
Query: 234 LDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LDADW++NAG WMWLS S+FF QFF Y PV FG+K D
Sbjct: 403 LDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKAD 440
>gi|167736303|dbj|BAG07408.1| cryptochrome-m [Riptortus pedestris]
Length = 538
Score = 309 bits (792), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 151/275 (54%), Positives = 189/275 (68%), Gaps = 11/275 (4%)
Query: 3 YQKLVSVLESLPKPKP------ADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPL 56
+Q +V+ +ES P P P DA + + + H +++ VPT++E+G D +
Sbjct: 154 FQSVVASMESPPLPVPPVTSTVVGDAVSPISDD-----HDEKYGVPTLEELGFDTEGLLP 208
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGE+EAL RLE+ L K WV F KP P SL PS T LSPYL+FGCLS RLFY+
Sbjct: 209 GVWQGGESEALSRLERHLERKAWVASFGKPKMTPQSLLPSQTGLSPYLRFGCLSTRLFYY 268
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
+L + A PP+SL GQ+ WREF+Y + PNFD+M GN IC QV WD N + L
Sbjct: 269 QLNDLYRKIKKAVPPLSLHGQVLWREFFYCAATKNPNFDRMIGNPICVQVPWDKNPEALA 328
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
W++G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDA
Sbjct: 329 KWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDA 388
Query: 237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DW++NAG WMWLS S+FF QFF Y PV FG+K D
Sbjct: 389 DWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKAD 423
>gi|291389942|ref|XP_002711467.1| PREDICTED: cryptochrome 1 (photolyase-like) [Oryctolagus cuniculus]
Length = 587
Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 147/273 (53%), Positives = 191/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C + H +++ VP+++E+G D + +
Sbjct: 153 FQTLISKME--PLEIPVETITSDVIEKCTTPVSDDHDEKYGVPSLEELGFDTDGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|157131015|ref|XP_001655778.1| DNA photolyase [Aedes aegypti]
gi|108871687|gb|EAT35912.1| AAEL011967-PA [Aedes aegypti]
Length = 820
Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 148/270 (54%), Positives = 188/270 (69%), Gaps = 1/270 (0%)
Query: 3 YQKLVSVLESLPKPKPADDAPT-SLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPG 61
+Q +++ +++ P+P+PA T + Q H D++ VPT++E+G + + + G
Sbjct: 194 FQAIIASMDAPPQPEPAITLDTIANATTPQYEDHDDKYGVPTLEELGFETEGLKPPIWVG 253
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GETEAL RLE+ L K WV F +P P SL S T LSPYL+FGCLS RLFY++L +
Sbjct: 254 GETEALARLERHLERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFYYQLTDL 313
Query: 122 LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
A PP+SL GQ+ WREF+Y + PNFDKM GN IC Q+ WD N + L W+ G
Sbjct: 314 YKKIKKACPPLSLHGQLLWREFFYCAATKNPNFDKMAGNPICVQIPWDRNAEALAKWASG 373
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW++N
Sbjct: 374 QTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVN 433
Query: 242 AGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AG WMWLS S+FF QFF Y PV FG+K D
Sbjct: 434 AGMWMWLSCSSFFQQFFHCYCPVKFGRKAD 463
>gi|87280964|gb|ABD36589.1| cryptochrome 1 [Podarcis siculus]
Length = 618
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 147/273 (53%), Positives = 189/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + +C + H ++ VP+++E+G D +P +
Sbjct: 153 FQTLISRME--PLEMPVETITAEVMSKCTTPVSDDHDEKCGVPSLEELGFDTGGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLAR AVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARRAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|307207594|gb|EFN85258.1| Cryptochrome-1 [Harpegnathos saltator]
Length = 558
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 150/278 (53%), Positives = 189/278 (67%), Gaps = 10/278 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGIL-------HPDEHLVPTMKEMGLDESS 53
+TY + +V+ S+ P+P TS C G H D + VPT++E+G D
Sbjct: 199 LTYHQFQNVVASMEPPEPPVLTVTS---ACIGSAYTPLKDDHDDHYGVPTLEELGFDTEG 255
Query: 54 IPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRL 113
+ + GGE+EAL RLE+ L K WV F +P P SL PS T LSPYL+FGCLS RL
Sbjct: 256 LLPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTGLSPYLRFGCLSTRL 315
Query: 114 FYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEK 173
FY++L + A PP+SL GQ+ WREF+Y + PNFD+M+GN IC Q+ WD N +
Sbjct: 316 FYYQLTDLYKKIKKAMPPLSLHGQLLWREFFYCAATKNPNFDRMQGNPICVQIPWDKNVE 375
Query: 174 YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELL 233
L W++G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VF+ELL
Sbjct: 376 ALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELL 435
Query: 234 LDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LDADW++NAG WMWLS S+FF QFF Y PV FG+K D
Sbjct: 436 LDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKAD 473
>gi|413936069|gb|AFW70620.1| hypothetical protein ZEAMMB73_082662 [Zea mays]
Length = 548
Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/275 (56%), Positives = 199/275 (72%), Gaps = 8/275 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHL-VPTMKEMGL-DESSIPLCK 58
+TYQ VS+ P PA + + LP G E L VPT++E+G D S +
Sbjct: 169 LTYQSFVSIAGE--PPAPAMEEYSELP--PLGDTGEYELLPVPTVEELGYGDISQEEIPP 224
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTTVLSPYLKFGCLSVRLFYHE 117
F GGETEAL+R+++SL NKEWV KFEKP P++ ++PSTTVLSPYLKFGCLS R FYH
Sbjct: 225 FHGGETEALRRMKESLQNKEWVAKFEKPKGDPSAFVKPSTTVLSPYLKFGCLSSRYFYHC 284
Query: 118 LKKI-LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
++ + + H KPPVSL GQ+ WR+F+Y V TPNFD+MKGNKIC Q+ W NE
Sbjct: 285 IQDVHRSVRNHTKPPVSLTGQLLWRDFFYTVSYGTPNFDRMKGNKICKQIPWSENEDLFV 344
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
AW G+TGYP+IDAIM QLR GW+HHLARH+VACFLTRGD+++ WE+G+ VFE LL+D+
Sbjct: 345 AWRDGQTGYPWIDAIMIQLRNWGWMHHLARHSVACFLTRGDMFIHWEKGRDVFERLLIDS 404
Query: 237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DWA+N GNW+WLS S+FF+Q+ R+YSP+ FGKK D
Sbjct: 405 DWAINNGNWLWLSCSSFFYQYHRIYSPITFGKKYD 439
>gi|404313305|gb|AFR54427.1| cryptochrome 2 [Mythimna separata]
Length = 757
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 147/277 (53%), Positives = 191/277 (68%), Gaps = 8/277 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGIL------HPDEHLVPTMKEMGLDESSI 54
+TY + +++ S+P P P +AP + + G H D VPT++E+G + +
Sbjct: 167 LTYHQFQALIASMPPP-PKAEAPITA-QTLNGATTPVTDDHDDRFGVPTLEELGFETEGL 224
Query: 55 PLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
+ GGE+EAL RLE+ L K WV F +P P SL S T LSPYL+FGCLS RLF
Sbjct: 225 KPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLF 284
Query: 115 YHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKY 174
Y++L ++ +PP+SL GQI WREF+Y + PNFD+M+GN IC Q+ W+ N++
Sbjct: 285 YYQLTELYKRVKRVRPPLSLHGQILWREFFYCAATRNPNFDRMEGNPICVQIPWEKNQEA 344
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
L W+ G+TGYP+IDAI+ QLR EGWIHHLARHAVACFLTRGDL++SWEEG VF+ELLL
Sbjct: 345 LAKWASGQTGYPWIDAIIIQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLL 404
Query: 235 DADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DADW++NAG WMWLS S+FF QFF Y PV FG+KTD
Sbjct: 405 DADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKTD 441
>gi|118572249|sp|Q5IZC5.2|CRY1_ERIRU RecName: Full=Cryptochrome-1
gi|57233429|gb|AAW48290.1| cryptochrome-1a [Erithacus rubecula]
Length = 620
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 147/273 (53%), Positives = 191/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + ++C + H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISRME--PLEMPVETITPEVMKKCTTPVFDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K V FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKASVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|222622395|gb|EEE56527.1| hypothetical protein OsJ_05816 [Oryza sativa Japonica Group]
Length = 551
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 158/275 (57%), Positives = 198/275 (72%), Gaps = 8/275 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHL-VPTMKEMGL-DESSIPLCK 58
MTYQ V++ P+P + + LP G E L VP ++E+G D S L
Sbjct: 173 MTYQSFVAIAGE--PPEPIMEEYSELP--PVGDTGEYELLPVPRVEELGYGDISQEDLSL 228
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTTVLSPYLKFGCLSVRLFYHE 117
F GGETEALKR+ +SL +KEWV KFEKP P++ L+P+TTVLSPYLKFGCLS R FYH
Sbjct: 229 FRGGETEALKRMRESLHDKEWVAKFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHC 288
Query: 118 LKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
++ I +T H PPVSL GQ+ WR+F+Y V TPNFD+MKGNKIC Q+ W NE+
Sbjct: 289 IQDIYRSTKKHTNPPVSLTGQLLWRDFFYTVAFGTPNFDQMKGNKICKQIPWTENEELFP 348
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
AW G+TGYP+IDAIM QLR GW+HHLARH+VACFLTRGDL++ WE+G+ VFE LL+D+
Sbjct: 349 AWRDGRTGYPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDS 408
Query: 237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DWA+N GNWMWLS S+FF+Q+ R+YSP +FGKK D
Sbjct: 409 DWAINNGNWMWLSCSSFFYQYHRIYSPTSFGKKYD 443
>gi|47218319|emb|CAG04151.1| unnamed protein product [Tetraodon nigroviridis]
Length = 625
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 146/276 (52%), Positives = 191/276 (69%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESL-PKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P PA+ + +C L H D++ VP+++E+G D +
Sbjct: 176 LTYKRFQTLISRMDPVEVPAESITAEIMGKCTTPLSDDHDDKYGVPSLEELGFDTEVLSS 235
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY
Sbjct: 236 AVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYF 295
Query: 117 ELKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
+L + ++ PP+SL GQ+ WREF+Y ++ P FDKM+ N IC Q+ WD N + L
Sbjct: 296 KLTDLYRKVKKNSSPPLSLYGQLLWREFFYTAATNNPCFDKMENNPICVQIPWDRNPEAL 355
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++ WEEG VFEELLLD
Sbjct: 356 AKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWIGWEEGMKVFEELLLD 415
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 416 ADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 451
>gi|18858465|ref|NP_571866.1| cryptochrome-1 [Danio rerio]
gi|8698588|dbj|BAA96848.1| cryptochrome 2a [Danio rerio]
Length = 655
Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 148/279 (53%), Positives = 194/279 (69%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P+ P + S+ C + H D++ VP+++E+G D +P
Sbjct: 148 LTYKRFQTLISRMDPPEMPVETLSNSIMGCCVTPVAEDHGDKYGVPSLEELGFDIEGLPS 207
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL R+E+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY
Sbjct: 208 AVWPGGETEALTRIERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYF 267
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
+L +K+ T + PP+SL GQ+ WREF+Y + P FDKM+GN IC ++ WD N
Sbjct: 268 KLTDLYRKVKKT---STPPLSLYGQLLWREFFYTAATTNPRFDKMEGNPICVRIPWDKNP 324
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ KTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEEL
Sbjct: 325 EALAKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDADW++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 385 LLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|57233431|gb|AAW48291.1| cryptochrome-1b [Erithacus rubecula]
Length = 587
Score = 307 bits (786), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 147/273 (53%), Positives = 191/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + ++C + H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISRME--PLEMPVETITPEVMKKCTTPVFDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K V FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKASVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|63100688|gb|AAH95305.1| Cry2a protein [Danio rerio]
Length = 658
Score = 307 bits (786), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 148/279 (53%), Positives = 194/279 (69%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P+ P + S+ C + H D++ VP+++E+G D +P
Sbjct: 148 LTYKRFQTLISRMDPPEMPVETLSNSIMGCCVTPVSEDHGDKYGVPSLEELGFDIEGLPS 207
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL R+E+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY
Sbjct: 208 AVWPGGETEALTRIERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYF 267
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
+L +K+ T + PP+SL GQ+ WREF+Y + P FDKM+GN IC ++ WD N
Sbjct: 268 KLTDLYRKVKKT---STPPLSLYGQLLWREFFYTAATTNPRFDKMEGNPICVRIPWDKNP 324
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ KTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEEL
Sbjct: 325 EALAKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 384
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDADW++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 385 LLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|432959668|ref|XP_004086356.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 653
Score = 307 bits (786), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 145/276 (52%), Positives = 193/276 (69%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ L P+ P + +L C + H +++ VP+++E+G D +P
Sbjct: 148 LTYKRFQTLISRLDPPEMPVETLSDTLMGCCVTPVSEDHGEKYGVPSLEELGFDTEGLPS 207
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL R+E+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY
Sbjct: 208 AVWPGGETEALTRIERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYF 267
Query: 117 ELKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
+L + ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC ++ WD N + L
Sbjct: 268 KLTDLYRKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVRIPWDKNPEAL 327
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ +TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLD
Sbjct: 328 AKWAEARTGFPWIDAIMSQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 387
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 388 ADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|46390519|dbj|BAD16007.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group]
gi|51536259|dbj|BAD38427.1| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group]
Length = 560
Score = 307 bits (786), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 158/275 (57%), Positives = 198/275 (72%), Gaps = 8/275 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHL-VPTMKEMGL-DESSIPLCK 58
MTYQ V++ P+P + + LP G E L VP ++E+G D S L
Sbjct: 182 MTYQSFVAIAGE--PPEPIMEEYSELPP--VGDTGEYELLPVPRVEELGYGDISQEDLSL 237
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTTVLSPYLKFGCLSVRLFYHE 117
F GGETEALKR+ +SL +KEWV KFEKP P++ L+P+TTVLSPYLKFGCLS R FYH
Sbjct: 238 FRGGETEALKRMRESLHDKEWVAKFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHC 297
Query: 118 LKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
++ I +T H PPVSL GQ+ WR+F+Y V TPNFD+MKGNKIC Q+ W NE+
Sbjct: 298 IQDIYRSTKKHTNPPVSLTGQLLWRDFFYTVAFGTPNFDQMKGNKICKQIPWTENEELFP 357
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
AW G+TGYP+IDAIM QLR GW+HHLARH+VACFLTRGDL++ WE+G+ VFE LL+D+
Sbjct: 358 AWRDGRTGYPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDS 417
Query: 237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DWA+N GNWMWLS S+FF+Q+ R+YSP +FGKK D
Sbjct: 418 DWAINNGNWMWLSCSSFFYQYHRIYSPTSFGKKYD 452
>gi|348529122|ref|XP_003452063.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 630
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 146/276 (52%), Positives = 191/276 (69%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESL-PKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P PA+ + +C L H ++ VP+++E+G D +
Sbjct: 148 LTYKRFQTLISRMDPVEVPAESITAEIMGKCTTPLSEDHDEKFGVPSLEELGFDTEGLSS 207
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY
Sbjct: 208 AVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYF 267
Query: 117 ELKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
+L + ++ PP+SL GQ+ WREF+Y ++ P FDKM+ N IC Q+ WD N + L
Sbjct: 268 KLTDLYRKVKKNSSPPLSLYGQLLWREFFYTAATNNPCFDKMESNPICVQIPWDRNPEAL 327
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLD
Sbjct: 328 AKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 387
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 388 ADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|297598791|ref|NP_001046243.2| Os02g0204400 [Oryza sativa Japonica Group]
gi|306756329|sp|Q0E2Y1.1|UVR3_ORYSJ RecName: Full=(6-4)DNA photolyase
gi|255670698|dbj|BAF08157.2| Os02g0204400 [Oryza sativa Japonica Group]
Length = 551
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 158/275 (57%), Positives = 198/275 (72%), Gaps = 8/275 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHL-VPTMKEMGL-DESSIPLCK 58
MTYQ V++ P+P + + LP G E L VP ++E+G D S L
Sbjct: 173 MTYQSFVAIAGE--PPEPIMEEYSELPP--VGDTGEYELLPVPRVEELGYGDISQEDLSL 228
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTTVLSPYLKFGCLSVRLFYHE 117
F GGETEALKR+ +SL +KEWV KFEKP P++ L+P+TTVLSPYLKFGCLS R FYH
Sbjct: 229 FRGGETEALKRMRESLHDKEWVAKFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHC 288
Query: 118 LKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
++ I +T H PPVSL GQ+ WR+F+Y V TPNFD+MKGNKIC Q+ W NE+
Sbjct: 289 IQDIYRSTKKHTNPPVSLTGQLLWRDFFYTVAFGTPNFDQMKGNKICKQIPWTENEELFP 348
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
AW G+TGYP+IDAIM QLR GW+HHLARH+VACFLTRGDL++ WE+G+ VFE LL+D+
Sbjct: 349 AWRDGRTGYPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDS 408
Query: 237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DWA+N GNWMWLS S+FF+Q+ R+YSP +FGKK D
Sbjct: 409 DWAINNGNWMWLSCSSFFYQYHRIYSPTSFGKKYD 443
>gi|218190281|gb|EEC72708.1| hypothetical protein OsI_06300 [Oryza sativa Indica Group]
Length = 551
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 157/275 (57%), Positives = 198/275 (72%), Gaps = 8/275 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHL-VPTMKEMGL-DESSIPLCK 58
MTYQ V++ P+P + + LP G E L VP ++E+G D S L
Sbjct: 173 MTYQSFVAIAGE--PPEPIMEEYSELPP--VGDTGEYELLPVPRVEELGYGDISQEDLSP 228
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTTVLSPYLKFGCLSVRLFYHE 117
F GGETEALKR+ +SL +KEWV KFEKP P++ L+P+TTVLSPYLKFGCLS R FYH
Sbjct: 229 FRGGETEALKRMRESLHDKEWVAKFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHC 288
Query: 118 LKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
++ + +T H PPVSL GQ+ WR+F+Y V TPNFD+MKGNKIC Q+ W NE+
Sbjct: 289 IQDVYRSTKKHTNPPVSLTGQLLWRDFFYTVAFGTPNFDQMKGNKICKQIPWTENEELFP 348
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
AW G+TGYP+IDAIM QLR GW+HHLARH+VACFLTRGDL++ WE+G+ VFE LL+D+
Sbjct: 349 AWRDGRTGYPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDS 408
Query: 237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DWA+N GNWMWLS S+FF+Q+ R+YSP +FGKK D
Sbjct: 409 DWAINNGNWMWLSCSSFFYQYHRIYSPTSFGKKYD 443
>gi|344253241|gb|EGW09345.1| Cryptochrome-1 [Cricetulus griseus]
Length = 428
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 145/262 (55%), Positives = 185/262 (70%), Gaps = 4/262 (1%)
Query: 14 PKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRL 70
P PA+ + + +C L H +++ VP+++E+G D + +PGGETEAL RL
Sbjct: 3 PLEMPAETITSDVIGKCMTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRL 62
Query: 71 EKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILA-TGPHAK 129
E+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L + ++
Sbjct: 63 ERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSS 122
Query: 130 PPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFID 189
PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W+ G+TG+P+ID
Sbjct: 123 PPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWID 182
Query: 190 AIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLS 249
AIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW++NAG+WMWLS
Sbjct: 183 AIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLS 242
Query: 250 ASAFFHQFFRVYSPVAFGKKTD 271
S+FF QFF Y PV FG++TD
Sbjct: 243 CSSFFQQFFHCYCPVGFGRRTD 264
>gi|302745152|gb|ADL62679.1| cryptochrome 1a [Phreatichthys andruzzii]
Length = 623
Score = 306 bits (785), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 146/273 (53%), Positives = 191/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E++ P A+ + C + H ++ VP+++E+G D + +
Sbjct: 153 FQTLISRMEAVETP--AETITAEVMGTCTTPVSDDHDEKFGVPSLEELGFDTEGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS +LFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCQLFYFKLT 270
Query: 120 KIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYRKVKKNSSPPLSLYGQLLWREFFYTTATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV+FG++TD
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVSFGRRTD 423
>gi|406507547|gb|AFS34617.1| cryptochrome 2 [Clunio marinus]
Length = 657
Score = 306 bits (785), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 147/278 (52%), Positives = 188/278 (67%), Gaps = 10/278 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGIL-------HPDEHLVPTMKEMGLDESS 53
+TY + +++ S+ P PA+ ++ + G H D + VPT++E+G D
Sbjct: 157 LTYHQFQAIIASMEPPPPAE---ATIAEDIIGNTRTPIDDDHDDRYGVPTLEELGFDTEG 213
Query: 54 IPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRL 113
+ + GGETEAL RLE+ L K WV F +P +P SL S T LSPYL+FGCLS RL
Sbjct: 214 LKPPIWIGGETEALARLERHLERKAWVASFGRPKMSPQSLLASQTGLSPYLRFGCLSTRL 273
Query: 114 FYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEK 173
FY++L + PP+SL GQ+ WREF+Y + PNFDKM GN IC Q+ WD N +
Sbjct: 274 FYYQLTDLYKKIKKTCPPLSLHGQLLWREFFYCCATKNPNFDKMSGNPICVQIPWDKNPE 333
Query: 174 YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELL 233
L W++G+TGYP+IDAIM QLR EGWIHHLARHAVACFLTRG+L++SWEEG VFEELL
Sbjct: 334 ALAKWANGQTGYPWIDAIMSQLREEGWIHHLARHAVACFLTRGNLWISWEEGMKVFEELL 393
Query: 234 LDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LDADW++NAG W+WLS S+FF QFF Y PV FG+K D
Sbjct: 394 LDADWSVNAGMWLWLSCSSFFQQFFHCYCPVKFGRKAD 431
>gi|77166866|gb|ABA62409.1| cryptochrome 2 [Danaus plexippus]
gi|357623166|gb|EHJ74426.1| cryptochrome 2 [Danaus plexippus]
Length = 742
Score = 306 bits (785), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 146/275 (53%), Positives = 192/275 (69%), Gaps = 4/275 (1%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPT--SLPRECQGIL--HPDEHLVPTMKEMGLDESSIPL 56
+TY + +++ S+P P A+ + +L R I H + VPT++E+G D +
Sbjct: 174 LTYHQFQALIASMPPPPSAEPTISLETLNRAVTPISDNHDERFGVPTLEELGFDTEGLKP 233
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGE EAL RLE+ L K WV F +P P SL S T LSPYL+FGCLS RLFY+
Sbjct: 234 PIWIGGENEALLRLERHLERKAWVASFGRPKMTPESLLSSQTGLSPYLRFGCLSTRLFYY 293
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
+L ++ +PP+SL GQI WREF+Y + PNFD+M+GN IC Q+ W+ N++ L+
Sbjct: 294 QLSELYKRIKQERPPLSLHGQILWREFFYCAATRNPNFDRMEGNPICVQIPWEKNQEALK 353
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
W++G+TG+P+IDAIM QLR +GWIHHLARHAVACFLTRGDL++SWEEG VF+ELLLDA
Sbjct: 354 KWANGQTGFPWIDAIMIQLRNDGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDA 413
Query: 237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DW++NAG WMWLS S+FF QFF Y PV FG+KTD
Sbjct: 414 DWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKTD 448
>gi|405952216|gb|EKC20054.1| Cleavage stimulation factor 77 kDa subunit [Crassostrea gigas]
Length = 1237
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 149/276 (53%), Positives = 190/276 (68%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTS--LPRECQGIL--HPDEHLVPTMKEMGLDESSIPL 56
+TY++ SVL + P ++ S L + I H D++ VPT++E+G D +
Sbjct: 843 LTYKRFQSVLAKMEAPSEPEETINSGFLVKTKTPIAEDHDDKYGVPTLEELGFDTEGLGP 902
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
F GGE EAL RLE+ L K WV FE+P + SL PS VLSPYL+FGCLS RLFY
Sbjct: 903 AVFHGGEAEALTRLERHLERKAWVASFERPKMSQQSLFPSQNVLSPYLRFGCLSARLFYW 962
Query: 117 ELKKILATGPHAK-PPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
+L+++ K PP+SL GQ+ WREF+Y V ++ PNFD+MK N +C Q+ WD N + L
Sbjct: 963 KLRELYRKVKKRKDPPLSLHGQLLWREFFYTVATNNPNFDRMKDNPLCVQIPWDKNPEAL 1022
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR GWIH+LARH+VACFLTRGDL++SWEEG VFEELLLD
Sbjct: 1023 AKWAEGKTGFPWIDAIMMQLRQTGWIHNLARHSVACFLTRGDLWISWEEGMKVFEELLLD 1082
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG WMWLS S+FF QFF Y PV FGK+ D
Sbjct: 1083 ADWSVNAGMWMWLSCSSFFQQFFHCYCPVGFGKRAD 1118
>gi|429544803|gb|AGA01579.1| cryptochrome 2 [Rhyparobia maderae]
Length = 586
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 150/277 (54%), Positives = 187/277 (67%), Gaps = 8/277 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGIL------HPDEHLVPTMKEMGLDESSI 54
+TY + +V+ S+ P PA+ P P+ G H D++ VPT++E+G D +
Sbjct: 153 LTYHQFQTVIASMGPPPPAE--PNISPKFMNGAYTPIGDDHDDKYGVPTLEELGFDIEGL 210
Query: 55 PLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
+ GGE EAL RLE+ L K WV F +P P SL S T LSPYL+FGCLS RLF
Sbjct: 211 LPPVWQGGEPEALARLERHLERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLF 270
Query: 115 YHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKY 174
Y++L + A PP+SL GQ+ WREF+Y + PNFDKM GN IC Q+ WD N +
Sbjct: 271 YYQLTDLYEKIKKACPPLSLHGQLLWREFFYCAATRNPNFDKMMGNPICVQIPWDKNAEA 330
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
L W++G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLL
Sbjct: 331 LAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLL 390
Query: 235 DADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DADW++NAG WMWLS +FF QFF Y PV FG+K D
Sbjct: 391 DADWSVNAGMWMWLSCPSFFQQFFHCYCPVRFGRKAD 427
>gi|8698592|dbj|BAA96850.1| cryptochrome3 [Danio rerio]
Length = 598
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 149/271 (54%), Positives = 187/271 (69%), Gaps = 2/271 (0%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHL-VPTMKEMGLDESSIPLCKFPG 61
+Q +V+ LE KP P Q + DEH VP+++E+G L + G
Sbjct: 153 FQAIVNRLELPRKPLPTITQEQMARCRTQISDNHDEHYGVPSLEELGFRTQGDSLHVWKG 212
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GETEAL+RL K L K WV FE+P + SL PS T LSPYL+FGCLS R+FY+ L+ +
Sbjct: 213 GETEALERLNKHLDRKAWVANFERPRISGQSLFPSPTGLSPYLRFGCLSCRVFYYNLRDL 272
Query: 122 -LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSH 180
+ + PP+SL GQ+ WREF+Y G++ PNFD M+GN IC Q+ WD N + L W+
Sbjct: 273 FMKLRRRSSPPLSLFGQLLWREFFYTAGTNNPNFDHMEGNPICVQIPWDHNPEALAKWAE 332
Query: 181 GKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAM 240
G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VFEELLLDADW++
Sbjct: 333 GRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGMKVFEELLLDADWSV 392
Query: 241 NAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 393 NAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 423
>gi|40254688|ref|NP_571861.2| cryptochrome-2 [Danio rerio]
gi|28278010|gb|AAH46088.1| Cryptochrome 3 [Danio rerio]
Length = 598
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 149/271 (54%), Positives = 187/271 (69%), Gaps = 2/271 (0%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHL-VPTMKEMGLDESSIPLCKFPG 61
+Q +V+ LE KP P Q + DEH VP+++E+G L + G
Sbjct: 153 FQAIVNRLELPRKPLPTITQEQMARCRTQISDNHDEHYGVPSLEELGFRTQGDSLHVWKG 212
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GETEAL+RL K L K WV FE+P + SL PS T LSPYL+FGCLS R+FY+ L+ +
Sbjct: 213 GETEALERLNKHLDRKAWVANFERPRISGQSLFPSPTGLSPYLRFGCLSCRVFYYNLRDL 272
Query: 122 -LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSH 180
+ + PP+SL GQ+ WREF+Y G++ PNFD M+GN IC Q+ WD N + L W+
Sbjct: 273 FMKLRRRSSPPLSLFGQLLWREFFYTAGTNNPNFDHMEGNPICVQIPWDHNPEALAKWAE 332
Query: 181 GKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAM 240
G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VFEELLLDADW++
Sbjct: 333 GRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGMKVFEELLLDADWSV 392
Query: 241 NAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 393 NAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 423
>gi|148226272|ref|NP_001088990.1| Cry1 protein [Xenopus laevis]
gi|49899105|gb|AAH76838.1| Cry1 protein [Xenopus laevis]
Length = 556
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 154/279 (55%), Positives = 190/279 (68%), Gaps = 13/279 (4%)
Query: 1 MTYQKLVSVLESLPKP-KPA------DDAPTSLPRECQGILHPDEHLVPTMKEMGLDESS 53
+TY+ + VL L P KPA D + P E + + +P +++G+
Sbjct: 149 LTYKNFLRVLSVLGDPDKPARQITLEDFIKCTTPTEFAA---EEYYRIPKPEDLGICRDC 205
Query: 54 IPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRL 113
P + GGE+EAL RLE+ L + WV F+KP T PNSL PSTT LSPY FGCLS R+
Sbjct: 206 AP--NWKGGESEALCRLEQHLEKQGWVANFQKPQTVPNSLLPSTTGLSPYFSFGCLSARV 263
Query: 114 FYHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
FYH L I A H+ PPVSL GQ+ WREF+Y S TPNF M GN IC Q++W NE
Sbjct: 264 FYHRLSNIYAQSKNHSLPPVSLQGQLLWREFFYTAASSTPNFTHMVGNPICLQIEWYKNE 323
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L+ W GKTG+P+IDAIM QL EGWIHHLARHAVACFLTRGDL++SWEEG VFEEL
Sbjct: 324 EQLQKWREGKTGFPWIDAIMAQLHEEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEL 383
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAGNWMWLSASAFFH + R++ PV FG++TD
Sbjct: 384 LLDADYSINAGNWMWLSASAFFHHYTRIFCPVRFGRRTD 422
>gi|119618202|gb|EAW97796.1| cryptochrome 1 (photolyase-like), isoform CRA_b [Homo sapiens]
Length = 427
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 140/238 (58%), Positives = 176/238 (73%), Gaps = 1/238 (0%)
Query: 35 HPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLE 94
H +++ VP+++E+G D + +PGGETEAL RLE+ L K WV FE+P NSL
Sbjct: 27 HDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMNANSLL 86
Query: 95 PSTTVLSPYLKFGCLSVRLFYHELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPN 153
S T LSPYL+FGCLS RLFY +L + ++ PP+SL GQ+ WREF+Y ++ P
Sbjct: 87 ASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPR 146
Query: 154 FDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
FDKM+GN IC Q+ WD N + L W+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFL
Sbjct: 147 FDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFL 206
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
TRGDL++SWEEG VFEELLLDADW++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 207 TRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 264
>gi|47215847|emb|CAG02310.1| unnamed protein product [Tetraodon nigroviridis]
Length = 606
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 145/276 (52%), Positives = 191/276 (69%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P+ P + +L C + H ++ VP+++E+G D +P
Sbjct: 115 LTYKRFQTLISRMDPPEMPVEMLSGNLMGRCVTPISEDHGEKFGVPSLEELGFDIEGLPS 174
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL R+E+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY
Sbjct: 175 AVWPGGETEALTRIERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYF 234
Query: 117 ELKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
+L + + PP+SL GQ+ WREF+Y ++ P FDKM+GN IC ++ WD N + L
Sbjct: 235 KLTDLYRKVKKNTSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVRIPWDRNMEAL 294
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ KTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLD
Sbjct: 295 AKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 354
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 355 ADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 390
>gi|444245671|gb|AGD94517.1| cryptochrome, partial [Solenopsis invicta]
Length = 573
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 141/237 (59%), Positives = 174/237 (73%)
Query: 35 HPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLE 94
H D + VPT++E+G D S+ + GGE+EAL RLE+ L K WV F +P P SL
Sbjct: 206 HDDHYGVPTLEELGFDTESLLPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLL 265
Query: 95 PSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
PS T LSPYL+FGCLS RLFY++L + A PP+SL GQ+ WREF+Y + PNF
Sbjct: 266 PSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAVPPLSLHGQLLWREFFYCAATKNPNF 325
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
D+M+GN IC Q+ WD N + L W++G+TG+P+IDAIM QLR EGWIHHLARHAVACFLT
Sbjct: 326 DRMQGNPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLT 385
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
RGDL++SWEEG VF+ELLLDADW++NAG WMWLS S+FF QFF Y PV FG+K D
Sbjct: 386 RGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKAD 442
>gi|383863231|ref|XP_003707085.1| PREDICTED: cryptochrome-1-like [Megachile rotundata]
Length = 589
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 148/278 (53%), Positives = 190/278 (68%), Gaps = 10/278 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGIL-------HPDEHLVPTMKEMGLDESS 53
+TY + +V+ + P+P PT + C G H D + VPT++E+G D
Sbjct: 166 LTYHQFQNVVACMDVPEPP--VPT-VTFACVGSAYTPVKEDHDDHYGVPTLEELGFDTEG 222
Query: 54 IPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRL 113
+ + GGE+EAL RLE+ L K WV F +P P SL PS T LSPYL+FGCLS RL
Sbjct: 223 LLPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTGLSPYLRFGCLSTRL 282
Query: 114 FYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEK 173
FY++L + A PP+SL GQ+ WREF+Y ++ PNFD+M+GN IC Q+ WD N +
Sbjct: 283 FYYQLTDLYKKIKKAVPPLSLHGQLLWREFFYCAATNNPNFDRMQGNPICVQIPWDKNIE 342
Query: 174 YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELL 233
L W++G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VF+ELL
Sbjct: 343 ALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELL 402
Query: 234 LDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LDADW++NAG WMWLS S+FF QFF Y P+ FG+K D
Sbjct: 403 LDADWSVNAGMWMWLSCSSFFQQFFHCYCPIRFGRKAD 440
>gi|432943720|ref|XP_004083252.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 624
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 145/276 (52%), Positives = 190/276 (68%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESL-PKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P P + + +C L H ++ VP+++E+G D +
Sbjct: 148 LTYKRFQTLISRMDPVEMPVESITAEVMGKCTTPLSDDHDEKFGVPSLEELGFDTEGLSS 207
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY
Sbjct: 208 AVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYF 267
Query: 117 ELKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
+L + ++ PP+SL GQ+ WREF+Y ++ P FDKM+ N IC Q+ WD N + L
Sbjct: 268 KLTDLYRKVKKNSSPPLSLYGQLLWREFFYTAATNNPCFDKMESNPICVQMPWDRNPEAL 327
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLD
Sbjct: 328 AKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 387
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 388 ADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|302745156|gb|ADL62681.1| criptochrome 2a, partial [Phreatichthys andruzzii]
Length = 488
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 149/276 (53%), Positives = 191/276 (69%), Gaps = 12/276 (4%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S ++ P PA+ ++ C + H D++ VP+++E+G D +P +
Sbjct: 5 FQTLISRMD--PPEMPAETLSNTIMGCCVTPVSEDHGDKYGVPSLEELGFDIEGLPSAVW 62
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL- 118
PGGETEAL R+E+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 63 PGGETEALTRIERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 122
Query: 119 ---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
+K+ T PP+SL GQ+ WREF+Y + P FDKM+GN IC ++ WD N + L
Sbjct: 123 DLYRKVKKTN---TPPLSLYGQLLWREFFYTAATSNPRFDKMEGNPICVRIPWDKNPEAL 179
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ KTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLD
Sbjct: 180 AKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 239
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 240 ADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 275
>gi|80971694|gb|ABB52817.1| cryptochrome 1 [Sesamia nonagrioides]
Length = 247
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 134/208 (64%), Positives = 169/208 (81%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+P++ E+ DES + K+PGGETE L+RL +A +EWV KFEKPN++PNSLEPSTTVL
Sbjct: 40 IPSLDELEFDESGLNPLKYPGGETEGLRRLNMYMARREWVCKFEKPNSSPNSLEPSTTVL 99
Query: 101 SPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGN 160
SPY+ GCLS +LFYH+LK++L + H +PPVSLLGQ+ WREFYY G+ T NFDKM GN
Sbjct: 100 SPYISHGCLSAKLFYHKLKEVLNSMRHTEPPVSLLGQLMWREFYYTAGAGTENFDKMVGN 159
Query: 161 KICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYL 220
+C Q+ W NE++L AW+ G+TGYPF+DAIMRQL+ EGWIHHLARH VACFLTRGDL++
Sbjct: 160 SVCTQIPWGKNEEHLIAWAEGRTGYPFVDAIMRQLKQEGWIHHLARHMVACFLTRGDLWI 219
Query: 221 SWEEGQSVFEELLLDADWAMNAGNWMWL 248
SWE+G VFE+ LLD DW++NAGNWMW+
Sbjct: 220 SWEQGAKVFEDYLLDYDWSLNAGNWMWV 247
>gi|327271582|ref|XP_003220566.1| PREDICTED: cryptochrome-1-like [Anolis carolinensis]
Length = 438
Score = 304 bits (779), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 151/278 (54%), Positives = 197/278 (70%), Gaps = 11/278 (3%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGILHPDEHL-----VPTMKEMGLDESSI 54
+TY++ + +L +L P+ P +D ++ + P+E L VP +++G+ +
Sbjct: 57 LTYKRFLQILTTLGDPEMPVEDLTAENSQKLCPL--PEEDLDECYRVPLPEDLGISKEH- 113
Query: 55 PLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
L + GGET L+RLE+ + N+ W+ KF KP T PNSL PSTT LSPY GCLSVR+F
Sbjct: 114 -LSPWRGGETTGLQRLEEHMKNQGWIAKFTKPRTIPNSLLPSTTGLSPYFSLGCLSVRMF 172
Query: 115 YHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEK 173
++ L KI A H+ PPVSL GQ+ WREF+Y V S TPNF KM GN IC Q++W + +
Sbjct: 173 FYRLSKIYAQSKNHSLPPVSLQGQLLWREFFYTVASATPNFTKMVGNPICLQIEWYEDAE 232
Query: 174 YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELL 233
L W +TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELL
Sbjct: 233 KLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELL 292
Query: 234 LDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LD+D+++NAGNWMWLSASAFFHQ+ R++ PV FGK+TD
Sbjct: 293 LDSDYSINAGNWMWLSASAFFHQYSRIFCPVRFGKRTD 330
>gi|347971574|ref|XP_313179.4| AGAP004261-PA [Anopheles gambiae str. PEST]
gi|347971576|ref|XP_003436763.1| AGAP004261-PB [Anopheles gambiae str. PEST]
gi|347971578|ref|XP_003436764.1| AGAP004261-PC [Anopheles gambiae str. PEST]
gi|333468729|gb|EAA44753.4| AGAP004261-PA [Anopheles gambiae str. PEST]
gi|333468730|gb|EGK97037.1| AGAP004261-PB [Anopheles gambiae str. PEST]
gi|333468731|gb|EGK97038.1| AGAP004261-PC [Anopheles gambiae str. PEST]
Length = 1056
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 148/276 (53%), Positives = 187/276 (67%), Gaps = 6/276 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSL-----PRECQGILHPDEHLVPTMKEMGLDESSIP 55
+TY + +++ S+ P P +A +L Q H D++ VPT++E+G + ++
Sbjct: 244 LTYHQFQAIIASMDAP-PQPEAAITLDVIGNANTPQYDDHDDKYGVPTLEELGFETEALR 302
Query: 56 LCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY 115
+ GGETEAL RLE+ L K WV F +P P SL S T LSPYL+FGCLS RLFY
Sbjct: 303 PPVWIGGETEALARLERHLERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFY 362
Query: 116 HELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
++L + A PP+SL GQ+ WREF+Y + P FDKM GN IC Q+ WD N + L
Sbjct: 363 YQLTDLYKKIKKACPPLSLHGQLLWREFFYCAATKNPTFDKMAGNPICVQIPWDRNAEAL 422
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLD
Sbjct: 423 AKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 482
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG WMWLS S+FF QFF Y PV FG+K D
Sbjct: 483 ADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKAD 518
>gi|81864807|sp|Q70AD6.1|CRY1_SPAJD RecName: Full=Cryptochrome-1
gi|44843612|emb|CAE54425.1| sCRY1 protein [Spalax judaei]
Length = 587
Score = 304 bits (778), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 145/273 (53%), Positives = 189/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D + +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L + WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERRAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLT DL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTGSDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|380017772|ref|XP_003692819.1| PREDICTED: cryptochrome-1-like [Apis florea]
Length = 571
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 140/237 (59%), Positives = 173/237 (72%)
Query: 35 HPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLE 94
H D + VPT++E+G D + + GGE+EAL RLE+ L K WV F +P P SL
Sbjct: 204 HDDHYGVPTLEELGFDTEGLLPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLL 263
Query: 95 PSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
PS T LSPYL+FGCLS RLFY++L + A PP+SL GQ+ WREF+Y + PNF
Sbjct: 264 PSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAVPPLSLHGQLLWREFFYCAATKNPNF 323
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
D+M+GN IC Q+ WD N + L W++G+TG+P+IDAIM QLR EGWIHHLARHAVACFLT
Sbjct: 324 DRMQGNPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLT 383
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
RGDL++SWEEG VF+ELLLDADW++NAG WMWLS S+FF QFF Y PV FG+K D
Sbjct: 384 RGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKAD 440
>gi|242020203|ref|XP_002430545.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus
corporis]
gi|212515709|gb|EEB17807.1| Deoxyribodipyrimidine photo-lyase, putative [Pediculus humanus
corporis]
Length = 506
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 145/275 (52%), Positives = 189/275 (68%), Gaps = 4/275 (1%)
Query: 1 MTYQKLVSVLESL-PKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY + +++ ++ P P+P + +L Q L H +++ VPT++E+G + +
Sbjct: 156 LTYHQFQTIIANIGPPPEPEETVTANLLEGSQTPLSDDHDNKYGVPTLEELGFETDKLKP 215
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGE+EAL RLE+ L K WV F P P SL S T LSPYL+FGCLS RLFY+
Sbjct: 216 TVWSGGESEALARLERHLERKAWVASFGHPKMTPQSLLASQTGLSPYLRFGCLSTRLFYY 275
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
+L ++ A PP+SL GQ+ WREF+Y + PNFDKM N IC Q+ WD N + L
Sbjct: 276 QLVELYKKIKKAMPPLSLHGQLLWREFFYCAATKNPNFDKMNENPICVQIPWDENAQALA 335
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
W++G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VF+ELLLDA
Sbjct: 336 KWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFDELLLDA 395
Query: 237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DW++NAG WMWLS S+FF QFF Y PV FG+K D
Sbjct: 396 DWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKAD 430
>gi|78191297|gb|ABB29887.1| cryptochrome 2 [Anopheles gambiae]
Length = 961
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 148/276 (53%), Positives = 187/276 (67%), Gaps = 6/276 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSL-----PRECQGILHPDEHLVPTMKEMGLDESSIP 55
+TY + +++ S+ P P +A +L Q H D++ VPT++E+G + ++
Sbjct: 149 LTYHQFQAIIASMDAP-PQPEAAITLDVIGNANTPQYDDHDDKYGVPTLEELGFETEALR 207
Query: 56 LCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY 115
+ GGETEAL RLE+ L K WV F +P P SL S T LSPYL+FGCLS RLFY
Sbjct: 208 PPVWIGGETEALARLERHLERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFY 267
Query: 116 HELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
++L + A PP+SL GQ+ WREF+Y + P FDKM GN IC Q+ WD N + L
Sbjct: 268 YQLTDLYKKIKKACPPLSLHGQLLWREFFYCAATKNPTFDKMAGNPICVQIPWDRNAEAL 327
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLD
Sbjct: 328 AKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 387
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG WMWLS S+FF QFF Y PV FG+K D
Sbjct: 388 ADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKAD 423
>gi|302745154|gb|ADL62680.1| criptochrome 1b, partial [Phreatichthys andruzzii]
Length = 564
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 145/276 (52%), Positives = 192/276 (69%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESL-PKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P PA+ + +C + H D+ VP+++E+G + +
Sbjct: 105 LTYKRFQTLISKMDPVEIPAETITAEVMGKCATPVSDDHDDKFGVPSLEELGFETDGLSS 164
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY
Sbjct: 165 AVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYF 224
Query: 117 ELKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
+L + ++ PP+SL GQ+ WREF+Y ++ P+FDKM+ N IC Q+ WD N + L
Sbjct: 225 KLTDLYRKVKKNSLPPLSLYGQLLWREFFYTAATNNPHFDKMEFNPICVQIPWDRNPEAL 284
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLD
Sbjct: 285 AKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 344
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 345 ADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 380
>gi|136255185|ref|NP_001077099.1| cryptochrome 2 [Apis mellifera]
gi|133754347|gb|ABO38437.1| cryptochrome 2 [Apis mellifera]
Length = 570
Score = 303 bits (777), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 140/237 (59%), Positives = 173/237 (72%)
Query: 35 HPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLE 94
H D + VPT++E+G D + + GGE+EAL RLE+ L K WV F +P P SL
Sbjct: 204 HDDHYGVPTLEELGFDTEGLLPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLL 263
Query: 95 PSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
PS T LSPYL+FGCLS RLFY++L + A PP+SL GQ+ WREF+Y + PNF
Sbjct: 264 PSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAVPPLSLHGQLLWREFFYCAATKNPNF 323
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
D+M+GN IC Q+ WD N + L W++G+TG+P+IDAIM QLR EGWIHHLARHAVACFLT
Sbjct: 324 DRMQGNPICVQIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLT 383
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
RGDL++SWEEG VF+ELLLDADW++NAG WMWLS S+FF QFF Y PV FG+K D
Sbjct: 384 RGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKAD 440
>gi|312372433|gb|EFR20390.1| hypothetical protein AND_20159 [Anopheles darlingi]
Length = 1043
Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 146/276 (52%), Positives = 188/276 (68%), Gaps = 13/276 (4%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL-------HPDEHLVPTMKEMGLDESSIP 55
+Q +++ +++ P+P+ T++ E G H D++ VPT++E+G + ++
Sbjct: 256 FQAIIASMDAPPQPE------TTITLEAIGGATTPLYDDHDDKYGVPTLEELGFETEALR 309
Query: 56 LCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY 115
+ GGETEAL RLE+ L K WV F +P P SL S T LSPYL+FGCLS RLFY
Sbjct: 310 PPVWIGGETEALARLERHLERKAWVASFGRPKMTPQSLLASQTGLSPYLRFGCLSTRLFY 369
Query: 116 HELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
++L + A PP+SL GQ+ WREF+Y + P FDKM GN IC Q+ WD N + L
Sbjct: 370 YQLTDLYKKIKKACPPLSLHGQLLWREFFYCAATKNPTFDKMAGNPICVQIPWDRNSEAL 429
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLD
Sbjct: 430 AKWASGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 489
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG WMWLS S+FF QFF Y PV FG+K D
Sbjct: 490 ADWSVNAGMWMWLSCSSFFQQFFHCYCPVKFGRKAD 525
>gi|260829102|ref|XP_002609501.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae]
gi|229294858|gb|EEN65511.1| hypothetical protein BRAFLDRAFT_230263 [Branchiostoma floridae]
Length = 514
Score = 303 bits (776), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 146/276 (52%), Positives = 191/276 (69%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKP-KPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ ++L + P +P D S + H ++ VP+++E+G D ++
Sbjct: 150 LTYKRFQAILSKMDPPDQPVDSITASTVDNLTTPIRDDHDEKFGVPSLEELGFDTDNLNP 209
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL RLE+ L K WV FE+P +SL S T LSPYL+FGCLS RLFY
Sbjct: 210 VVWPGGETEALTRLERHLERKAWVASFERPKMTASSLLASPTGLSPYLRFGCLSPRLFYK 269
Query: 117 ELKKILATGPHAK-PPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
+L ++ + PP+SL GQ+ WREF+Y ++ PNFDKM N IC Q+ WD N + L
Sbjct: 270 KLTELYKKVKRSNHPPLSLYGQLLWREFFYTAATNNPNFDKMVNNTICVQIPWDKNPEAL 329
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ G+TG+P+IDAIM QL+ EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLD
Sbjct: 330 AKWAEGQTGFPWIDAIMAQLQQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 389
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG+WMWLS S+FF QFF VY PV FG++TD
Sbjct: 390 ADWSVNAGSWMWLSCSSFFQQFFHVYCPVNFGRRTD 425
>gi|148540005|ref|NP_571865.4| cryptochrome 1b [Danio rerio]
gi|27882364|gb|AAH44558.1| Cry1b protein [Danio rerio]
Length = 606
Score = 303 bits (776), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 144/276 (52%), Positives = 191/276 (69%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESL-PKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P PA+ + +C + H D+ VP+++E+G + +
Sbjct: 148 LTYKRFQTLISRMDPVEMPAETITAEIMGKCSTPVSDDHDDKFGVPSLEELGFETEGLST 207
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY
Sbjct: 208 AVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYF 267
Query: 117 ELKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
+L + ++ P +SL GQ+ WREF+Y ++ P+FDKM+ N IC Q+ WD N + L
Sbjct: 268 KLTDLYRKVKKNSTPSLSLYGQLLWREFFYTAATNNPHFDKMEFNPICVQIPWDRNPEAL 327
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLD
Sbjct: 328 AKWAEGQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 387
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 388 ADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|159479960|ref|XP_001698054.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
gi|158273853|gb|EDO99639.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
Length = 595
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 145/233 (62%), Positives = 176/233 (75%), Gaps = 4/233 (1%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLE-PSTTV 99
VPT +E+G E PL F GGETEAL RLE + + +WV F+KP+T P++ E P+TTV
Sbjct: 195 VPTWQEVGFKEP--PLTVFKGGETEALARLEAAFQDPKWVAGFQKPDTDPSAWEKPATTV 252
Query: 100 LSPYLKFGCLSVRLFYHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMK 158
LSPYLKFGCLS RLF+ L ++ P H++PPVSL GQ+ WREF+Y VGS TPNF +M
Sbjct: 253 LSPYLKFGCLSARLFHARLLEVYRRHPAHSQPPVSLRGQLLWREFFYTVGSTTPNFHRMA 312
Query: 159 GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
GN +C Q+DWD N ++L AW +TG+P+IDAIM QL GW+HHLARH+VACFLTRGDL
Sbjct: 313 GNPVCKQIDWDDNPEFLAAWREARTGFPWIDAIMTQLVTWGWMHHLARHSVACFLTRGDL 372
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
Y+SWE G VFEE L+D D +NA NWMWLSASAFF Q+FRVYSPV FGKK D
Sbjct: 373 YVSWERGMEVFEEHLIDQDHYLNAANWMWLSASAFFSQYFRVYSPVVFGKKYD 425
>gi|134032019|ref|NP_001076794.1| cryptochrome 2 [Tribolium castaneum]
gi|133754349|gb|ABO38438.1| cryptochrome 2 [Tribolium castaneum]
gi|270008089|gb|EFA04537.1| cryptochrome 2 [Tribolium castaneum]
Length = 535
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 143/238 (60%), Positives = 175/238 (73%), Gaps = 2/238 (0%)
Query: 35 HPDEHLVPTMKEMGLD-ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSL 93
H +++ VPT++E+G D E +P + GGE+EAL RLE+ L K WV F +P P SL
Sbjct: 200 HDEKYGVPTLEELGFDTEGRLPPV-WQGGESEALARLERHLERKAWVASFGRPKMTPQSL 258
Query: 94 EPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPN 153
PS T LSPYL+FGCLS RLFY++L + A PP+SL GQ+ WREF+Y + PN
Sbjct: 259 LPSQTGLSPYLRFGCLSTRLFYYQLTDLYKKIKKAFPPLSLHGQLLWREFFYCAATKNPN 318
Query: 154 FDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
FDKM GN IC Q+ WD N + L W++G+TG+P+IDAIM QLR EGWIHHLARHAVACFL
Sbjct: 319 FDKMIGNPICVQIPWDKNAEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFL 378
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
TRGDL+LSWEEG VFEELLLDADW++NAG WMWLS S+FF QFF Y P+ FG+K D
Sbjct: 379 TRGDLWLSWEEGMKVFEELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPIKFGRKAD 436
>gi|333755446|gb|ADN94465.2| cryptochrome 2 [Helicoverpa armigera]
Length = 657
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 138/237 (58%), Positives = 173/237 (72%)
Query: 35 HPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLE 94
H D VPT++E+G + + + GGE+EAL RLE+ L K WV F +P P SL
Sbjct: 219 HDDRFGVPTLEELGFETEGLKPPVWIGGESEALARLERHLERKAWVASFGRPKMTPQSLL 278
Query: 95 PSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
S T LSPYL+FGCLS RLFY++L ++ +PP+SL GQI WREF+Y + PNF
Sbjct: 279 ASQTGLSPYLRFGCLSTRLFYYQLTELYKRVKRVRPPLSLHGQILWREFFYCAATRNPNF 338
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
D+M+GN IC Q+ W+ N++ L W+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLT
Sbjct: 339 DRMEGNPICVQIPWEKNQEALAKWASGQTGFPWIDAIMIQLREEGWIHHLARHAVACFLT 398
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
RGDL++SWEEG VF+ELLLDADW++NAG WMWLS S+FF QFF Y PV FG+KTD
Sbjct: 399 RGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKTD 455
>gi|348519202|ref|XP_003447120.1| PREDICTED: cryptochrome-1-like [Oreochromis niloticus]
Length = 570
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 144/276 (52%), Positives = 189/276 (68%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +V+ + + PA+ + + C + H ++ VP+++E+G + +
Sbjct: 148 LTYKRFQAVINRMDAVEMPAETITFEVLKNCVTPISEDHDEKFGVPSLEELGFETEGLTT 207
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY
Sbjct: 208 AVWPGGETEALMRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYF 267
Query: 117 ELKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
+L + + PP+SL GQ+ WREF+Y ++ P FDKM GN IC Q+ WD N + L
Sbjct: 268 KLTDLYRKVKKNHTPPLSLYGQLLWREFFYTTATNNPCFDKMDGNPICVQIPWDRNPEAL 327
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ G+TG+P+IDAIM QLR EGWIHHLARH VACFLTRGDL++SWEEG VFEELLLD
Sbjct: 328 AKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHGVACFLTRGDLWISWEEGMKVFEELLLD 387
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 388 ADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|302828718|ref|XP_002945926.1| DNA photolyase [Volvox carteri f. nagariensis]
gi|300268741|gb|EFJ52921.1| DNA photolyase [Volvox carteri f. nagariensis]
Length = 621
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/233 (62%), Positives = 179/233 (76%), Gaps = 4/233 (1%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLE-PSTTV 99
VPT +E+G E+ P F GGETEALKRL SLA+ +WV F+KP+T P + E P+TTV
Sbjct: 187 VPTWQEVGFTEA--PTTIFKGGETEALKRLSASLADSKWVADFKKPDTDPAAFERPATTV 244
Query: 100 LSPYLKFGCLSVRLFYHELKKILAT-GPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMK 158
LSPY+KFGCLS RLF+ L ++ H++PPVSL GQ+ WREF+Y VG+ TPNF +M
Sbjct: 245 LSPYVKFGCLSPRLFHARLLEVYRRHRGHSQPPVSLRGQLLWREFFYTVGAHTPNFHRMD 304
Query: 159 GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
GN +C Q+DWD +E+ L AW +TG+P+IDAIM QLR GW+HHLARH+VACFLTRGDL
Sbjct: 305 GNPLCKQIDWDDDEELLAAWREARTGFPWIDAIMTQLRQWGWMHHLARHSVACFLTRGDL 364
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
Y+SWE G VFEELL+D D +NA NWMWLSASAFF Q+FRVYSP++FGKK D
Sbjct: 365 YVSWERGMQVFEELLIDQDHYLNAANWMWLSASAFFSQYFRVYSPISFGKKYD 417
>gi|148533563|gb|ABQ84983.1| antennal cryptochrome 2 [Spodoptera littoralis]
Length = 625
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 138/237 (58%), Positives = 173/237 (72%)
Query: 35 HPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLE 94
H D VPT++E+G + + + GGE+EAL RLE+ L K WV F +P P SL
Sbjct: 220 HDDRFGVPTLEELGFETEGLKPPVWIGGESEALARLERHLERKAWVASFGRPKMTPQSLL 279
Query: 95 PSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
S T LSPYL+FGCLS RLFY++L ++ +PP+SL GQI WREF+Y + PNF
Sbjct: 280 ASQTGLSPYLRFGCLSTRLFYYQLTELYKRVKRVRPPLSLHGQILWREFFYCAATRNPNF 339
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
D+M+GN IC Q+ W+ N++ L W+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLT
Sbjct: 340 DRMEGNPICVQIPWEKNQEALAKWASGQTGFPWIDAIMIQLREEGWIHHLARHAVACFLT 399
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
RGDL++SWEEG VF+ELLLDADW++NAG WMWLS S+FF QFF Y PV FG+KTD
Sbjct: 400 RGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKTD 456
>gi|302745162|gb|ADL62684.1| cryptochrome 4, partial [Phreatichthys andruzzii]
Length = 274
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 142/238 (59%), Positives = 178/238 (74%), Gaps = 3/238 (1%)
Query: 35 HPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLE 94
H + VP++ ++GL+ L +PGGET AL+RL+K ++ WV F K T PNSL
Sbjct: 33 HEKTYAVPSLADLGLEVEFDVL--WPGGETHALQRLDKHFQSQGWVTSFSKTRTVPNSLL 90
Query: 95 PSTTVLSPYLKFGCLSVRLFYHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPN 153
PS+T LSPYL GCLSVR FYH+L + A H+ PP+SL GQ+ WREF+Y V S TPN
Sbjct: 91 PSSTGLSPYLSLGCLSVRTFYHQLSSVYAQSKNHSLPPLSLQGQVLWREFFYTVASSTPN 150
Query: 154 FDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
F KM+GN IC Q+ W + + LE W +TG+P+IDAIM QLR EGWIHHLARHAVACFL
Sbjct: 151 FTKMEGNPICLQIQWYHDPEALEKWRTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFL 210
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
TRGDL++SWEEG VFEELLLDAD+++NAGNWMWLSASAFFH++ R++ PV FG++TD
Sbjct: 211 TRGDLWISWEEGMKVFEELLLDADYSINAGNWMWLSASAFFHKYTRIFCPVRFGRRTD 268
>gi|8698586|dbj|BAA96847.1| cryptochrome 1b [Danio rerio]
Length = 606
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 143/276 (51%), Positives = 191/276 (69%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESL-PKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P PA+ + +C + H ++ VP+++E+G + +
Sbjct: 148 LTYKRFQTLISRMDPVEMPAETITAEIMGKCSTPVSDDHDNKFGVPSLEELGFETEGLST 207
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY
Sbjct: 208 AVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYF 267
Query: 117 ELKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
+L + ++ P +SL GQ+ WREF+Y ++ P+FDKM+ N IC Q+ WD N + L
Sbjct: 268 KLTDLYRKVKKNSTPSLSLYGQLLWREFFYTAATNNPHFDKMEFNPICVQIPWDRNPEAL 327
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLD
Sbjct: 328 AKWAEGQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 387
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 388 ADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|94733627|emb|CAK05311.1| cryptochrome 1b [Danio rerio]
Length = 606
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 143/276 (51%), Positives = 191/276 (69%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESL-PKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P PA+ + +C + H ++ VP+++E+G + +
Sbjct: 148 LTYKRFQTLISRMDPVEMPAETITAEIMGKCSTPVSDDHDNKFGVPSLEELGFETEGLST 207
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY
Sbjct: 208 AVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYF 267
Query: 117 ELKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
+L + ++ P +SL GQ+ WREF+Y ++ P+FDKM+ N IC Q+ WD N + L
Sbjct: 268 KLTDLYRKVKKNSTPSLSLYGQLLWREFFYTAATNNPHFDKMEFNPICVQIPWDRNPEAL 327
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLD
Sbjct: 328 AKWAEGQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLD 387
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 388 ADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|194332801|ref|NP_001123706.1| uncharacterized protein LOC100170456 [Xenopus (Silurana)
tropicalis]
gi|189442599|gb|AAI67313.1| LOC100170456 protein [Xenopus (Silurana) tropicalis]
Length = 557
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 150/276 (54%), Positives = 188/276 (68%), Gaps = 7/276 (2%)
Query: 1 MTYQKLVSVLESLPKP-KPADDAPTSLPREC---QGILHPDEHLVPTMKEMGLDESSIPL 56
+TY+ + VL L P KPA + +C + + + +P +++G+ +
Sbjct: 149 LTYKNFLRVLSMLGNPDKPARQITSEDFIKCITPTKLAAEEYYRIPKPEDLGISKDCP-- 206
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGE+EAL RLE+ L + WV F+KP T PNSL PSTT LSPY GCLSVR+F+H
Sbjct: 207 TNWIGGESEALSRLEQHLEKQGWVANFKKPQTIPNSLLPSTTGLSPYFSLGCLSVRVFFH 266
Query: 117 ELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L I A H+ PPVSL GQ+ WREF+Y V S TPNF M GN IC Q+DW NE+ L
Sbjct: 267 RLSNIYAQSKNHSLPPVSLQGQLLWREFFYTVASSTPNFTHMVGNPICLQIDWYKNEEQL 326
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
+ W KTG+P+IDAIM QL EGWIHHLARHAVACFLTRGDL++SWEEG VFEE LLD
Sbjct: 327 QKWKEAKTGFPWIDAIMTQLHNEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEEFLLD 386
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+ +NAGNWMWLSASAFFH + R++ PV FGK++D
Sbjct: 387 ADYCINAGNWMWLSASAFFHHYTRIFCPVRFGKRSD 422
>gi|167526345|ref|XP_001747506.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773952|gb|EDQ87586.1| predicted protein [Monosiga brevicollis MX1]
Length = 486
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 144/255 (56%), Positives = 183/255 (71%), Gaps = 5/255 (1%)
Query: 23 PTSLPRECQGI---LHPDEHLVPTMKEMGLDESSIP-LCKFPGGETEALKRLEKSLANKE 78
P S ++C G + VPT+KEMG P + FPGGE EALKRLE + K
Sbjct: 137 PESYLKKCGGASKDRQDKSYDVPTLKEMGYSPIKAPQMVLFPGGEREALKRLEHFIKKKN 196
Query: 79 WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKIL-ATGPHAKPPVSLLGQ 137
W+ FEKP T P +L+P TT LSPY+K GCLSVR F+++++K+ H+ PP SL GQ
Sbjct: 197 WIATFEKPKTNPAALDPDTTGLSPYMKMGCLSVRKFWYDVQKVYDEKKDHSTPPESLHGQ 256
Query: 138 IYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRL 197
+ +RE +++ G NFDKMKGN+IC Q+DWD +EK+L+AW + KTGYP+IDA M QLR
Sbjct: 257 LLFRELFHLCGYAVKNFDKMKGNRICRQIDWDYSEKFLDAWENSKTGYPWIDACMAQLRH 316
Query: 198 EGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQF 257
EGW+HHLARHAVACFLTRGDLY SWE G +FE+ L+DADW +N NWMWLS S+FF+Q+
Sbjct: 317 EGWMHHLARHAVACFLTRGDLYQSWEHGARIFEKHLVDADWHLNNANWMWLSCSSFFYQY 376
Query: 258 FRVYSPVAFGKKTDK 272
FRVYSP+ FG+K DK
Sbjct: 377 FRVYSPIGFGQKYDK 391
>gi|386762985|gb|AFJ22639.1| cryptochrome 2 [Agrotis ipsilon]
Length = 812
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 137/237 (57%), Positives = 173/237 (72%)
Query: 35 HPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLE 94
H D VPT++E+G + + + GGE+EAL RLE+ L K WV F +P P SL
Sbjct: 243 HDDRFGVPTLEELGFETEGLKPPVWIGGESEALARLERHLERKAWVASFGRPKMTPQSLL 302
Query: 95 PSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
S T LSPYL+FGCLS RLFY++L ++ +PP+SL GQI WREF+Y + PNF
Sbjct: 303 ASQTGLSPYLRFGCLSTRLFYYQLTELYKRVKRVRPPLSLHGQILWREFFYCAATRNPNF 362
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
D+M+GN IC Q+ W+ N++ L W+ G++G+P+IDAIM QLR EGWIHHLARHAVACFLT
Sbjct: 363 DRMEGNPICVQIPWEKNQEALAKWASGQSGFPWIDAIMIQLREEGWIHHLARHAVACFLT 422
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
RGDL++SWEEG VF+ELLLDADW++NAG WMWLS S+FF QFF Y PV FG+KTD
Sbjct: 423 RGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKTD 479
>gi|148905938|gb|ABR16130.1| unknown [Picea sitchensis]
Length = 431
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 146/274 (53%), Positives = 197/274 (71%), Gaps = 7/274 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCK-F 59
+TYQ + ++ LP P P + S+P GI + ++ +PT+ ++G + S C F
Sbjct: 50 LTYQSFIKLI-GLP-PLPLGNGSPSIPPV--GIDNSNDLPIPTLTDLGFGDVSQEECNPF 105
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTTVLSPYLKFGCLSVRLFYHEL 118
GGETEALKR++ S+ +++WV FEKP P + L+P+TTVLSPYLKFGCLS RLFY L
Sbjct: 106 IGGETEALKRMDASIQDQKWVAAFEKPKGDPTAFLKPATTVLSPYLKFGCLSSRLFYQRL 165
Query: 119 KKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEA 177
+++ H +PPVSL GQ+ WREF+Y V TP FD+M+GN IC Q+ W+ ++ L A
Sbjct: 166 QEVYRKVKKHTEPPVSLEGQLLWREFFYTVAYGTPKFDQMEGNPICKQIPWNDDDSLLSA 225
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W G+TGYP+IDA+M QLR GW+HHLARHAVACFLTRGDL++ WE+G+ VF+ LL+D+D
Sbjct: 226 WRDGQTGYPWIDAVMVQLRKWGWMHHLARHAVACFLTRGDLFVHWEKGRDVFDRLLIDSD 285
Query: 238 WAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
WA+N NWMWLS SAFF Q+ R+YSP++FGKK D
Sbjct: 286 WAINNSNWMWLSCSAFFSQYHRIYSPISFGKKYD 319
>gi|399220401|gb|AFP33464.1| cryptochrome 1 [Dicentrarchus labrax]
Length = 567
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 142/276 (51%), Positives = 188/276 (68%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + + PA+ + R C + H D+ VP+++E+G + +
Sbjct: 148 LTYKRFQALINRMDAVELPAETITLEVIRNCATPISEDHDDKFGVPSLEELGFETEGLTT 207
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY
Sbjct: 208 AIWPGGETEALMRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYF 267
Query: 117 ELKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L + + PP+SL GQ+ WREF+Y ++ FDKM+GN +C Q+ WD N + L
Sbjct: 268 RLTDLYRKVKKNNSPPLSLYGQLLWREFFYTTATNNSCFDKMEGNPVCVQIPWDRNPEAL 327
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELL+D
Sbjct: 328 AKWAEGQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLID 387
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DW++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 388 VDWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|326513908|dbj|BAJ92104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 546
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 152/277 (54%), Positives = 197/277 (71%), Gaps = 12/277 (4%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGI-LHPDEHLVPTMKEMG---LDESSIPL 56
+TYQ V+ PKP + + + G L P VP ++E+G L + IP
Sbjct: 169 LTYQSFVATAGEPPKPVMEEYSVLPPIGDTGGYELLP----VPKLEELGYGDLSQEYIP- 223
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTTVLSPYLKFGCLSVRLFY 115
F GGETEALKR+ +SL +KEWV KFEKP P++ ++P+TTVLSPYLKFGCLSVR FY
Sbjct: 224 -PFRGGETEALKRMRESLQDKEWVAKFEKPKGDPSAFVKPATTVLSPYLKFGCLSVRYFY 282
Query: 116 HELKKILATG-PHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKY 174
H ++ + + H KPPVSL GQ+ WR+F+Y V TPNFD M+GN IC Q+ W +E+
Sbjct: 283 HCIQDVYRSAKTHTKPPVSLAGQLLWRDFFYTVSLGTPNFDHMEGNPICKQIPWRESEEL 342
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
AW G+TGYP+IDAIM QLR GW+HHLARH+VACFLTRGDLY+ WE+G+ VFE LL+
Sbjct: 343 FVAWRDGRTGYPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLYIHWEQGRDVFERLLI 402
Query: 235 DADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
D+DWA+N GNW+WLS S+FF+Q+ R+YSP++FGKK D
Sbjct: 403 DSDWAINNGNWLWLSCSSFFYQYHRIYSPISFGKKYD 439
>gi|145881069|gb|ABP97098.1| cryptochrome CRY1 [Acropora millepora]
Length = 552
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 144/275 (52%), Positives = 188/275 (68%), Gaps = 4/275 (1%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY+K ++++ SL P+ P L C + H ++ VP++KE+GLD + +
Sbjct: 172 LTYKKFLAIVRSLGNPQHPCATLDVHLLGGCSTPVSEDHEEKFGVPSLKELGLDVAKLST 231
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL++ L K W+ FEKP PNSL PS T LSPYL+FGCLS RLFYH
Sbjct: 232 EIWHGGETEALIRLDRHLERKAWIASFEKPKVTPNSLFPSPTGLSPYLRFGCLSPRLFYH 291
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
L ++ PP+SL GQ+ WREF++ V ++ PNFD+M N +C Q+ W N ++L+
Sbjct: 292 RLSELYRKVKCKDPPISLYGQLLWREFFFTVAANNPNFDQMDENPVCLQIPWTANPEWLK 351
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
W G+TG+P+IDAIM QL+ EG IHHLARHAV CFLTRGDL++SWEEG VFE LLDA
Sbjct: 352 KWEQGQTGFPWIDAIMIQLKQEGXIHHLARHAVGCFLTRGDLWISWEEGMKVFERWLLDA 411
Query: 237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+W++NAGNWMWLS SAFF QFF PV FG+K D
Sbjct: 412 EWSLNAGNWMWLSCSAFFQQFFNCICPVGFGRKLD 446
>gi|357139910|ref|XP_003571518.1| PREDICTED: (6-4)DNA photolyase-like [Brachypodium distachyon]
Length = 547
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 151/275 (54%), Positives = 199/275 (72%), Gaps = 8/275 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPREC-QGILHPDEHLVPTMKEMGL-DESSIPLCK 58
+TYQ +++ PKP A+ + L + + L P VP ++E+G D S +
Sbjct: 170 LTYQSFLAIAGEPPKPVMAEYSELPLIGDTGEYELLP----VPKLEELGYGDISQENISP 225
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTTVLSPYLKFGCLSVRLFYHE 117
F GGETEALKR+ +SL +KEWV FEKP P++ L+P+TTVLSPYLKFGCLS R FYH
Sbjct: 226 FRGGETEALKRMRESLQDKEWVSMFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHC 285
Query: 118 LKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
++++ +T H KPPVSL GQ+ WR+F+Y V T +FD MKGNKIC Q+ W NE+
Sbjct: 286 IQEVYRSTKKHTKPPVSLTGQLLWRDFFYTVSFGTLSFDHMKGNKICKQIPWRQNEELFV 345
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
AW G+TGYP+IDAIM QLR GW+HHLARH+VACFLTRGDL++ WE+G+ VFE LL+D+
Sbjct: 346 AWRDGRTGYPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDS 405
Query: 237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DWA+N GNW+WLS S+FF+Q+ R+YSP++FGKK D
Sbjct: 406 DWAINNGNWLWLSCSSFFYQYHRIYSPISFGKKYD 440
>gi|345483304|ref|XP_001606405.2| PREDICTED: cryptochrome-1 [Nasonia vitripennis]
Length = 627
Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 147/278 (52%), Positives = 184/278 (66%), Gaps = 10/278 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGIL-------HPDEHLVPTMKEMGLDESS 53
+TY + +V+ + P+ A T+ C G H D VPT++E+G D
Sbjct: 208 LTYHQFQNVIARMDPPEYPAAAVTA---ACIGSAYTPLKDDHDDFFGVPTLEELGFDTEG 264
Query: 54 IPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRL 113
+ + GGETEAL RLE+ L K WV F +P P SL PS T LSPYL+FGCLS RL
Sbjct: 265 LMAPVWVGGETEALARLERHLERKAWVASFGRPKMTPQSLLPSQTGLSPYLRFGCLSTRL 324
Query: 114 FYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEK 173
FY++L + PP+SL GQ+ WREF+Y ++ PNFD+M GN IC Q+ WD N
Sbjct: 325 FYYQLADLYKKIKKTIPPLSLHGQLLWREFFYCAATNNPNFDRMHGNPICVQIPWDKNVV 384
Query: 174 YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELL 233
L W++G+TG+P+IDAIM QLR EGWIH LARHAVACFLTRGDL++SWEEG VF+ELL
Sbjct: 385 ALSKWANGQTGFPWIDAIMTQLREEGWIHQLARHAVACFLTRGDLWISWEEGMKVFDELL 444
Query: 234 LDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LDADW++NAG WMWLS S+FF QFF Y PV FG+K D
Sbjct: 445 LDADWSINAGMWMWLSCSSFFQQFFHCYCPVRFGRKAD 482
>gi|224085023|ref|XP_002198533.1| PREDICTED: cryptochrome-1-like [Taeniopygia guttata]
Length = 527
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 151/278 (54%), Positives = 190/278 (68%), Gaps = 12/278 (4%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGILHPDEHL-----VPTMKEMGLDESSI 54
+TY++ + +L L P+ P + + C+ P+ L VP ++ + S
Sbjct: 149 LTYKRFLHILSLLGDPELPVRNLTAEDFQRCRA---PEPGLAECYRVPLPVDLKISPES- 204
Query: 55 PLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
L + GGETE L+RLE+ L ++ WV F KP T+PNSL PSTT LSPY GCLSVR F
Sbjct: 205 -LSPWRGGETEGLRRLEQHLIDQGWVTSFAKPRTSPNSLLPSTTGLSPYFSMGCLSVRTF 263
Query: 115 YHELKKILATGPH-AKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEK 173
++ L I A H + PPVSL GQ+ WREF+Y V S TPNF +M GN IC Q+ W + +
Sbjct: 264 FYRLSNIYAQAKHHSLPPVSLQGQLLWREFFYTVASATPNFTQMAGNPICLQISWYKDAE 323
Query: 174 YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELL 233
L W KTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELL
Sbjct: 324 RLHKWKTAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELL 383
Query: 234 LDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LDAD+++NAGNWMWLSASAFFHQ+ R++ PV FGK+TD
Sbjct: 384 LDADYSINAGNWMWLSASAFFHQYTRIFCPVRFGKRTD 421
>gi|50510573|dbj|BAD32272.1| mKIAA0658 protein [Mus musculus]
Length = 584
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 149/276 (53%), Positives = 191/276 (69%), Gaps = 12/276 (4%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E LPK KPA + C+ + H D + VP+++E+G + +
Sbjct: 163 FQALISRME-LPK-KPAVAVSSQQMESCRAEIQENHDDTYGVPSLEELGFPTEGLGPAVW 220
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL- 118
GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+ L
Sbjct: 221 QGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLW 280
Query: 119 ---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L
Sbjct: 281 DLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEAL 337
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLD
Sbjct: 338 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLD 397
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 398 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 433
>gi|395538375|ref|XP_003771158.1| PREDICTED: cryptochrome-1 [Sarcophilus harrisii]
Length = 671
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 138/227 (60%), Positives = 167/227 (73%), Gaps = 1/227 (0%)
Query: 46 EMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLK 105
E G D +P +PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+
Sbjct: 255 EEGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLR 314
Query: 106 FGCLSVRLFYHELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICC 164
FGCLS RLFY +L + ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC
Sbjct: 315 FGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICV 374
Query: 165 QVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEE 224
Q+ WD N + L W+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEE
Sbjct: 375 QIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEE 434
Query: 225 GQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
G VFEELLLDADW++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 435 GMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 481
>gi|27312016|ref|NP_034093.1| cryptochrome-2 [Mus musculus]
gi|164519087|ref|NP_001106804.1| cryptochrome-2 [Mus musculus]
gi|81882058|sp|Q9R194.1|CRY2_MOUSE RecName: Full=Cryptochrome-2
gi|5670009|gb|AAD46561.1|AF156987_1 cryptochrome 2 [Mus musculus]
gi|26334673|dbj|BAC31037.1| unnamed protein product [Mus musculus]
gi|45219826|gb|AAH66799.1| Cryptochrome 2 (photolyase-like) [Mus musculus]
gi|56078856|gb|AAH54794.1| Cryptochrome 2 (photolyase-like) [Mus musculus]
gi|74227568|dbj|BAE21836.1| unnamed protein product [Mus musculus]
gi|148695658|gb|EDL27605.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus]
gi|148695659|gb|EDL27606.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Mus musculus]
Length = 592
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 149/276 (53%), Positives = 191/276 (69%), Gaps = 12/276 (4%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E LPK KPA + C+ + H D + VP+++E+G + +
Sbjct: 171 FQALISRME-LPK-KPAVAVSSQQMESCRAEIQENHDDTYGVPSLEELGFPTEGLGPAVW 228
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL- 118
GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+ L
Sbjct: 229 QGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLW 288
Query: 119 ---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L
Sbjct: 289 DLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEAL 345
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLD
Sbjct: 346 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLD 405
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 406 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 441
>gi|344247813|gb|EGW03917.1| Cryptochrome-2 [Cricetulus griseus]
Length = 577
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 147/279 (52%), Positives = 192/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK A TS E C+ + H D + VP+++E+G +
Sbjct: 151 LTYKRFQAIISRMELPKKPVGAVTSQQMENCRAEIQENHDDTYGVPSLEELGFPTEGLGP 210
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 211 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 270
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 271 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 327
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 328 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 387
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 388 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 426
>gi|2073148|dbj|BAA19864.1| photolyase/blue-light receptor homolog2 [Mus musculus]
Length = 569
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 149/276 (53%), Positives = 192/276 (69%), Gaps = 12/276 (4%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E LPK KPA +S C+ + H D + VP+++E+G + +
Sbjct: 148 FQALISRME-LPK-KPAVAVSSSRMESCRAEIQKNHDDTYGVPSLEELGFPTEGLGPAVW 205
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL- 118
GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+ L
Sbjct: 206 QGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLW 265
Query: 119 ---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+++GN IC Q+ WD N + L
Sbjct: 266 DLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRVEGNPICIQIPWDRNPEAL 322
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLD
Sbjct: 323 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLD 382
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 383 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 418
>gi|351696947|gb|EHA99865.1| Cryptochrome-2 [Heterocephalus glaber]
Length = 593
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 144/279 (51%), Positives = 191/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK P + + C+ + H D + VP+++E+G +
Sbjct: 167 LTYKRFQAIISRMELPKKPVGAVSSQQMKSCRAEIQENHDDTYGVPSLEELGFPTEGLGP 226
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 227 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 286
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 287 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 343
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 344 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 403
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 404 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 442
>gi|15341194|gb|AAK94667.1| cryptochrome 2b [Xenopus laevis]
Length = 570
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 142/276 (51%), Positives = 191/276 (69%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P+ PA C+ + H + + VP+++E+G +
Sbjct: 152 LTYKRFQAIISRMELPRRPAPSVTRQQMEACRAEIKRNHDETYGVPSLEELGFHSENKGH 211
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL RL++ L K WV +E+P + NSL S T LSPYL+FGCLS RLFY+
Sbjct: 212 AIWPGGETEALARLDRHLERKAWVANYERPRMSANSLLASPTGLSPYLRFGCLSCRLFYY 271
Query: 117 ELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L+++ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N K L
Sbjct: 272 RLQELYQKVKKNSPPPLSLYGQLLWREFFYTAATNNPKFDQMEGNPICVQIPWDKNPKAL 331
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL+ SWE G VF+ELLLD
Sbjct: 332 AKWTEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLD 391
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 392 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 427
>gi|297743390|emb|CBI36257.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 141/237 (59%), Positives = 181/237 (76%), Gaps = 9/237 (3%)
Query: 41 VPTMKEMGLDE----SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEP 95
VPT+KE+G +E S P F GGE+EALKRL +S+ +KEWV FEKP P++ L+P
Sbjct: 199 VPTVKELGYEEIGQDESTP---FKGGESEALKRLRESIRDKEWVANFEKPKGDPSAFLKP 255
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNF 154
+TTVLSPYLKFGCLS R FY L + H PPVSL+GQ+ WR+F+Y VG TPNF
Sbjct: 256 ATTVLSPYLKFGCLSSRYFYQCLTDVYKNMKWHTSPPVSLVGQLLWRDFFYTVGFGTPNF 315
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
D+MKGN+IC Q+ W+ +++ L AW +TGYP+IDAIM QLR GW+HHLARH VACFLT
Sbjct: 316 DRMKGNRICKQIPWNDDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLT 375
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
RGDL++ WE+G+ VFE LL+D+DWA+N GNW+WLS S+FF+Q+ R+YSP++FGKK D
Sbjct: 376 RGDLFVHWEKGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPISFGKKYD 432
>gi|228312124|pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure
gi|228312125|pdb|3FY4|B Chain B, (6-4) Photolyase Crystal Structure
gi|228312126|pdb|3FY4|C Chain C, (6-4) Photolyase Crystal Structure
gi|2804280|dbj|BAA24449.1| 6-4 photolyase [Arabidopsis thaliana]
gi|3929918|dbj|BAA34711.1| 6-4 photolyase [Arabidopsis thaliana]
gi|11994334|dbj|BAB02293.1| 6-4 photolyase [Arabidopsis thaliana]
Length = 537
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 141/234 (60%), Positives = 176/234 (75%), Gaps = 3/234 (1%)
Query: 41 VPTMKEMGL-DESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTT 98
VP+++E+G D+ F GGE+EALKRL KS+++K WV FEKP P++ L+P+TT
Sbjct: 199 VPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVANFEKPKGDPSAFLKPATT 258
Query: 99 VLSPYLKFGCLSVRLFYHELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
V+SPYLKFGCLS R FY L+ I H PPVSLLGQ+ WREF+Y TPNFDKM
Sbjct: 259 VMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLLWREFFYTTAFGTPNFDKM 318
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
KGN+IC Q+ W+ + L AW GKTGYP+IDAIM QL GW+HHLARH VACFLTRGD
Sbjct: 319 KGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGD 378
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
L++ WE+G+ VFE LL+D+DWA+N GNWMWLS S+FF+QF R+YSP++FGKK D
Sbjct: 379 LFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQFNRIYSPISFGKKYD 432
>gi|332211183|ref|XP_003254698.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-2 [Nomascus
leucogenys]
Length = 543
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 145/279 (51%), Positives = 193/279 (69%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK + TS E C+ + H + + VP+++E+G +
Sbjct: 190 LTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGP 249
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P + NSL S T LSPYL+FGCLS RLFY+
Sbjct: 250 AVWQGGETEALARLDKHLERKAWVANYERPRMSANSLLASPTGLSPYLRFGCLSCRLFYY 309
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 310 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 366
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 367 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 426
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 427 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 465
>gi|359483005|ref|XP_002285327.2| PREDICTED: (6-4)DNA photolyase [Vitis vinifera]
Length = 564
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 141/237 (59%), Positives = 181/237 (76%), Gaps = 9/237 (3%)
Query: 41 VPTMKEMGLDE----SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEP 95
VPT+KE+G +E S P F GGE+EALKRL +S+ +KEWV FEKP P++ L+P
Sbjct: 225 VPTVKELGYEEIGQDESTP---FKGGESEALKRLRESIRDKEWVANFEKPKGDPSAFLKP 281
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNF 154
+TTVLSPYLKFGCLS R FY L + H PPVSL+GQ+ WR+F+Y VG TPNF
Sbjct: 282 ATTVLSPYLKFGCLSSRYFYQCLTDVYKNMKWHTSPPVSLVGQLLWRDFFYTVGFGTPNF 341
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
D+MKGN+IC Q+ W+ +++ L AW +TGYP+IDAIM QLR GW+HHLARH VACFLT
Sbjct: 342 DRMKGNRICKQIPWNDDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLT 401
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
RGDL++ WE+G+ VFE LL+D+DWA+N GNW+WLS S+FF+Q+ R+YSP++FGKK D
Sbjct: 402 RGDLFVHWEKGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPISFGKKYD 458
>gi|18400841|ref|NP_566520.1| (6-4)DNA photolyase [Arabidopsis thaliana]
gi|306756349|sp|O48652.2|UVR3_ARATH RecName: Full=(6-4)DNA photolyase; AltName: Full=Protein UV repair
defective 3
gi|332642182|gb|AEE75703.1| (6-4)DNA photolyase [Arabidopsis thaliana]
Length = 556
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 141/234 (60%), Positives = 176/234 (75%), Gaps = 3/234 (1%)
Query: 41 VPTMKEMGL-DESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTT 98
VP+++E+G D+ F GGE+EALKRL KS+++K WV FEKP P++ L+P+TT
Sbjct: 218 VPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVANFEKPKGDPSAFLKPATT 277
Query: 99 VLSPYLKFGCLSVRLFYHELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
V+SPYLKFGCLS R FY L+ I H PPVSLLGQ+ WREF+Y TPNFDKM
Sbjct: 278 VMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLLWREFFYTTAFGTPNFDKM 337
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
KGN+IC Q+ W+ + L AW GKTGYP+IDAIM QL GW+HHLARH VACFLTRGD
Sbjct: 338 KGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGD 397
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
L++ WE+G+ VFE LL+D+DWA+N GNWMWLS S+FF+QF R+YSP++FGKK D
Sbjct: 398 LFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQFNRIYSPISFGKKYD 451
>gi|73983386|ref|XP_540761.2| PREDICTED: cryptochrome-2 [Canis lupus familiaris]
Length = 593
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 146/279 (52%), Positives = 192/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK + TS E C+ + H D + VP+++E+G +
Sbjct: 167 LTYKRFQAIISRMELPKKPVGSVTSQQMESCRADIQDNHDDTYGVPSLEELGFPTEGLGP 226
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 227 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 286
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 287 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 343
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 344 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 403
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 404 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 442
>gi|355681095|gb|AER96735.1| cryptochrome 2 [Mustela putorius furo]
Length = 521
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 146/279 (52%), Positives = 192/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK + TS E C+ + H D + VP+++E+G +
Sbjct: 95 LTYKRFQAIISRMELPKKPVGSVTSQQMESCRADIQENHDDTYGVPSLEELGFPTEGLGP 154
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 155 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 214
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 215 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 271
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 272 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 331
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 332 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 370
>gi|149635020|ref|XP_001507425.1| PREDICTED: cryptochrome-2 [Ornithorhynchus anatinus]
Length = 582
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 146/279 (52%), Positives = 191/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK TS E C+ + H D + VP+++E+G +
Sbjct: 154 LTYKRFQAIISRMELPKKPVSCVTSQQMEGCKAEIQDNHDDTYGVPSLEELGFPTDGLGP 213
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 214 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 273
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 274 RLWDLYKKVKR---NSTPPLSLYGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 330
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 331 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 390
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 391 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 429
>gi|348558770|ref|XP_003465189.1| PREDICTED: cryptochrome-2 [Cavia porcellus]
Length = 593
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 146/279 (52%), Positives = 192/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK A +S E C+ + H D + VP+++E+G +
Sbjct: 167 LTYKRFQAIISRMELPKKPVGAVSSQQMESCRAEIQENHDDTYGVPSLEELGFPTEGLGP 226
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 227 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 286
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 287 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 343
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 344 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 403
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 404 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 442
>gi|281348773|gb|EFB24357.1| hypothetical protein PANDA_011308 [Ailuropoda melanoleuca]
Length = 580
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 146/279 (52%), Positives = 192/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK + TS E C+ + H D + VP+++E+G +
Sbjct: 155 LTYKRFQAIISRMELPKKPVGSVTSQQMESCRADIQESHDDTYGVPSLEELGFPTEGLGP 214
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 215 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 274
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 275 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 331
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 332 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 391
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 392 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 430
>gi|301773864|ref|XP_002922356.1| PREDICTED: cryptochrome-2-like, partial [Ailuropoda melanoleuca]
Length = 581
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 146/279 (52%), Positives = 192/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK + TS E C+ + H D + VP+++E+G +
Sbjct: 155 LTYKRFQAIISRMELPKKPVGSVTSQQMESCRADIQESHDDTYGVPSLEELGFPTEGLGP 214
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 215 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 274
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 275 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 331
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 332 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 391
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 392 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 430
>gi|149022681|gb|EDL79575.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus]
gi|149022682|gb|EDL79576.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Rattus norvegicus]
gi|183985822|gb|AAI66416.1| Cryptochrome 2 (photolyase-like) [Rattus norvegicus]
Length = 594
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 146/273 (53%), Positives = 188/273 (68%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E LPK KP + C+ + H D + VP+++E+G + +
Sbjct: 171 FQALISRME-LPK-KPVGAVSSQHMENCRAEIQENHDDTYGVPSLEELGFPTEGLGPAVW 228
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+ L
Sbjct: 229 QGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLW 288
Query: 120 KIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L W
Sbjct: 289 DLYRKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKW 348
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLDAD+
Sbjct: 349 AEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADF 408
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 409 SVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 441
>gi|307190470|gb|EFN74495.1| Cryptochrome-1 [Camponotus floridanus]
Length = 525
Score = 297 bits (760), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 147/287 (51%), Positives = 188/287 (65%), Gaps = 19/287 (6%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGIL-------HPDEHLVPTMKEMGLDESS 53
+TY + +++ S+ P+P T+ C G H D + VPT++E+G D
Sbjct: 168 LTYHQFQNIVASMNPPEPPVSTVTA---ACIGNAYTPLKDDHDDHYGVPTLEELGFDTEG 224
Query: 54 IPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRL 113
+ + GGE+EAL RLE+ L K WV F +P P SL PS T LSPYL+FGCLS RL
Sbjct: 225 LLPPVWVGGESEALARLERHLERKAWVASFGRPKMTPQSLLPSQTGLSPYLRFGCLSTRL 284
Query: 114 FYHELKKILA---------TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICC 164
FY++L + A PP+SL GQ+ WREF+Y + NFD+M+GN IC
Sbjct: 285 FYYQLTDLYKKVQDDCNPIVIKKAVPPLSLHGQLLWREFFYCAATKNSNFDRMQGNPICV 344
Query: 165 QVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEE 224
Q+ WD N + L W++G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEE
Sbjct: 345 QIPWDKNVEALAKWANGQTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEE 404
Query: 225 GQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
G VF+ELLLDADW++NAG WMWLS S+FF QFF Y PV FG+K D
Sbjct: 405 GMKVFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYCPVRFGRKAD 451
>gi|432862559|ref|XP_004069915.1| PREDICTED: cryptochrome-1-like [Oryzias latipes]
Length = 562
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 136/238 (57%), Positives = 174/238 (73%), Gaps = 1/238 (0%)
Query: 35 HPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLE 94
H D+ V +++E+G + +P +PGGETEAL RLE+ L K WV +E+P NSL
Sbjct: 186 HDDKFGVLSLEELGFETEGLPTAVWPGGETEALLRLERHLERKAWVANYERPRMNANSLL 245
Query: 95 PSTTVLSPYLKFGCLSVRLFYHELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPN 153
+ T LSPYL+FGCLS RLFY +L + ++ PP+SL GQ+ WREF+Y ++ P
Sbjct: 246 ATPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTTATNNPC 305
Query: 154 FDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
FDKM+GN +C Q+ WD N + L W+ G+TG+ +IDAIM QLR EGWIHHLARHAVACFL
Sbjct: 306 FDKMEGNPVCVQIPWDRNPEALAKWAEGRTGFAWIDAIMTQLRQEGWIHHLARHAVACFL 365
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
TRGDL++SWEEG VFEELLLDADW++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 366 TRGDLWISWEEGVKVFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>gi|30088882|gb|AAP13561.1| cryptochrome 2 [Rana catesbeiana]
Length = 543
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 141/276 (51%), Positives = 190/276 (68%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P+ P +C+ + H D + VP+++E+G +
Sbjct: 153 LTYKRFQAIVSRMELPRRPVPSITRQQMEKCRAEIKSTHDDTYGVPSLEELGFPRDNPGA 212
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL RL++ L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 213 AVWPGGETEALARLDRHLERKAWVAHYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 272
Query: 117 ELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L+++ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L
Sbjct: 273 RLRELYQKVKKNSPPPLSLFGQLLWREFFYTAATNNPKFDQMEGNPICVQIPWDKNPEAL 332
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL+ SWE G VF+ELLLD
Sbjct: 333 AKWTEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLD 392
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 393 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 428
>gi|302745160|gb|ADL62683.1| cryptochrome 3, partial [Phreatichthys andruzzii]
Length = 475
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 146/272 (53%), Positives = 186/272 (68%), Gaps = 3/272 (1%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHL-VPTMKEMGLDESSIPLCKFPG 61
+Q +V+ LE KP P Q + DEH VP+++E+G + G
Sbjct: 131 FQAIVNRLELPRKPLPTITQEQMARCRTQISDNHDEHYGVPSLEELGFKTQRDSSHVWKG 190
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNT-APNSLEPSTTVLSPYLKFGCLSVRLFYHELKK 120
GETEA++RL K L K WV FE+P SL S T LSPYL+FGCLS R+FY+ L++
Sbjct: 191 GETEAMERLNKHLDRKGWVANFERPRIITAQSLFASPTGLSPYLRFGCLSCRVFYYNLRE 250
Query: 121 I-LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
+ + + PP+SL GQ+ WREF+Y G++ PNFD+M+GN IC Q+ WD N + L W+
Sbjct: 251 LFMKLRRRSSPPLSLFGQLLWREFFYTAGTNNPNFDRMEGNPICVQIPWDHNPEALAKWA 310
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VFEELLLDADW+
Sbjct: 311 EGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGMKVFEELLLDADWS 370
Query: 240 MNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 371 VNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 402
>gi|298708156|emb|CBJ30497.1| cryptochrome 1 [Ectocarpus siliculosus]
Length = 542
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 138/236 (58%), Positives = 178/236 (75%), Gaps = 1/236 (0%)
Query: 37 DEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPS 96
D +P++ ++G++ + L KF GGE EAL RLE+ +A ++W+ KFEKP T+PNS+EPS
Sbjct: 195 DRFSIPSLSDLGVEPLAKAL-KFRGGEREALARLERVMAREDWISKFEKPKTSPNSIEPS 253
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
TTVLS Y+ GCLS R F+H L K+ +KPPVSL GQ+ W+EF Y G P+FDK
Sbjct: 254 TTVLSMYISHGCLSTRRFWHALCKVYTKKGGSKPPVSLKGQLLWKEFNYFSGYSIPSFDK 313
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
M GN + Q+ WD +E+ L AW +TG+P+IDA M QL+ EGWIHHLARHAVACFLTRG
Sbjct: 314 MVGNPVIRQIPWDKDEEKLMAWKEARTGFPWIDAAMTQLKDEGWIHHLARHAVACFLTRG 373
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
DL+ SWE+G +VF+ELLLDADW++N NW WLS SAFF+Q+FR YSP+AFGKKTD+
Sbjct: 374 DLWQSWEDGAAVFDELLLDADWSINNFNWQWLSCSAFFYQYFRCYSPIAFGKKTDQ 429
>gi|19173768|ref|NP_596896.1| cryptochrome-2 [Rattus norvegicus]
gi|81867613|sp|Q923I8.1|CRY2_RAT RecName: Full=Cryptochrome-2
gi|15072464|gb|AAK61419.1| cryptochrome 2 [Rattus norvegicus]
Length = 594
Score = 296 bits (759), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 146/273 (53%), Positives = 188/273 (68%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E LPK KP + C+ + H D + VP+++E+G + +
Sbjct: 171 FQALISRME-LPK-KPVGAVSSQHMENCRAEIQENHDDTYGVPSLEELGFPTEGLGPAVW 228
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+ L
Sbjct: 229 QGGETEALVRLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLW 288
Query: 120 KIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L W
Sbjct: 289 DLYRKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKW 348
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLDAD+
Sbjct: 349 AEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADF 408
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 409 SVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 441
>gi|291290513|dbj|BAI82612.1| cryptochrome 2 [Xenopus (Silurana) tropicalis]
Length = 557
Score = 296 bits (759), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 143/276 (51%), Positives = 188/276 (68%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P+ PA C+ + H + + VP++ E+G
Sbjct: 146 LTYKRFQAIISRMELPRRPAPSVTRQQMEACRAEIKRNHDETYGVPSLDELGFHSEIKGP 205
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL RL++ L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 206 SIWPGGETEALARLDRHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 265
Query: 117 ELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
LK++ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N K L
Sbjct: 266 RLKELYKKVKKNSPPPLSLYGQLLWREFFYTAATNNPKFDQMEGNPICVQIPWDKNPKAL 325
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL+ SWE G VF+ELLLD
Sbjct: 326 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLD 385
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 386 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 421
>gi|410973791|ref|XP_003993331.1| PREDICTED: cryptochrome-2, partial [Felis catus]
Length = 582
Score = 296 bits (758), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 145/279 (51%), Positives = 192/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK + TS E C+ + H + + VP+++E+G +
Sbjct: 156 LTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDEAYGVPSLEELGFPTEGLGP 215
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 216 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 275
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 276 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 332
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 333 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 392
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 393 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 431
>gi|311247933|ref|XP_003122883.1| PREDICTED: cryptochrome-2 isoform 1 [Sus scrofa]
Length = 594
Score = 296 bits (758), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 147/276 (53%), Positives = 190/276 (68%), Gaps = 12/276 (4%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E LPK KP + C+ + H + + VP+++E+G + +
Sbjct: 173 FQALISRME-LPK-KPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVW 230
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL- 118
GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+ L
Sbjct: 231 QGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLW 290
Query: 119 ---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L
Sbjct: 291 DLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEAL 347
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLD
Sbjct: 348 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLD 407
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 408 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 443
>gi|109106624|ref|XP_001113162.1| PREDICTED: cryptochrome-2-like [Macaca mulatta]
gi|402893708|ref|XP_003910033.1| PREDICTED: cryptochrome-2 [Papio anubis]
gi|355566579|gb|EHH22958.1| Cryptochrome-2 [Macaca mulatta]
gi|355752191|gb|EHH56311.1| Cryptochrome-2 [Macaca fascicularis]
Length = 593
Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 145/279 (51%), Positives = 192/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK + TS E C+ + H + + VP+++E+G +
Sbjct: 167 LTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGP 226
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 227 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 286
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 287 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 343
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 344 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 403
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 404 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 442
>gi|326920457|ref|XP_003206489.1| PREDICTED: cryptochrome-2 [Meleagris gallopavo]
Length = 540
Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 142/276 (51%), Positives = 189/276 (68%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK P + C+ + H D + VP+++E+G +
Sbjct: 115 LTYKRFQAIISRMELPKKPVSSIVSQQMETCKVDIQENHDDMYGVPSLEELGFPTDGLAP 174
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 175 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 234
Query: 117 ELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L ++ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L
Sbjct: 235 RLWELYKKVKRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPWDKNPEAL 294
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLD
Sbjct: 295 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLD 354
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 355 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 390
>gi|431915736|gb|ELK16069.1| Cryptochrome-2 [Pteropus alecto]
Length = 593
Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 145/279 (51%), Positives = 192/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK + TS E C+ + H + + VP+++E+G +
Sbjct: 167 LTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGP 226
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 227 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 286
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 287 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 343
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 344 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 403
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 404 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 442
>gi|356526185|ref|XP_003531700.1| PREDICTED: (6-4)DNA photolyase-like [Glycine max]
Length = 535
Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 136/234 (58%), Positives = 178/234 (76%), Gaps = 3/234 (1%)
Query: 41 VPTMKEMGL-DESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTT 98
VPT++++G D F GGE+EALKRL++ + +K+WV FEKP P++ L+P+TT
Sbjct: 196 VPTIRDLGYGDAEQDEFSPFKGGESEALKRLDECMKDKKWVANFEKPKGNPSAFLKPATT 255
Query: 99 VLSPYLKFGCLSVRLFYHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
VLSPYLKFGCLS R FY ++ + + P H PPVSL+GQ+ WREF+Y TPNFD+M
Sbjct: 256 VLSPYLKFGCLSPRYFYQSIQDVYKSMPKHTLPPVSLIGQLLWREFFYTAAFGTPNFDRM 315
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
KGN+IC Q+ W ++K LEAW +TG+P+IDAIM QLR GW+HHLARH+VACFLTRGD
Sbjct: 316 KGNRICKQIPWKDDDKLLEAWREARTGFPWIDAIMVQLRKWGWMHHLARHSVACFLTRGD 375
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
L++ WE+G+ VFE LL+D+DWA+N GNWMWLS S+FF+Q+ R+YSP FGKK D
Sbjct: 376 LFVHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYNRIYSPTTFGKKYD 429
>gi|335281976|ref|XP_003353935.1| PREDICTED: cryptochrome-2 isoform 2 [Sus scrofa]
Length = 461
Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 147/276 (53%), Positives = 190/276 (68%), Gaps = 12/276 (4%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E LPK KP + C+ + H + + VP+++E+G + +
Sbjct: 40 FQALISRME-LPK-KPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGPAVW 97
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL- 118
GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+ L
Sbjct: 98 QGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLW 157
Query: 119 ---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L
Sbjct: 158 DLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEAL 214
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLD
Sbjct: 215 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLD 274
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 275 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 310
>gi|147901075|ref|NP_001083936.1| cryptochrome 2 (photolyase-like) [Xenopus laevis]
gi|50415857|gb|AAH77381.1| Cry2 protein [Xenopus laevis]
Length = 570
Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 142/276 (51%), Positives = 192/276 (69%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P+ + T E C+ + H + + VP+++E+G +
Sbjct: 152 LTYKRFQAIISRMELPRRLAPSVTRQQMEACRAEIKRNHDETYGVPSLEELGFHSENKGP 211
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL RL++ L K WV +E+P + NSL S T LSPYL+FGCLS RLFY+
Sbjct: 212 AIWPGGETEALARLDRHLERKAWVANYERPRMSANSLLASPTGLSPYLRFGCLSCRLFYY 271
Query: 117 ELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L+++ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N K L
Sbjct: 272 RLQELYQKVKKNSPPPLSLYGQLLWREFFYTAATNNPKFDQMEGNPICVQIPWDKNPKAL 331
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL+ SWE G VF+ELLLD
Sbjct: 332 AKWTEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLD 391
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 392 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 427
>gi|45383642|ref|NP_989575.1| cryptochrome-2 [Gallus gallus]
gi|19550965|gb|AAK61386.1| cryptochrome 2 [Gallus gallus]
Length = 582
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 142/276 (51%), Positives = 189/276 (68%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK P + C+ + H D + VP+++E+G +
Sbjct: 157 LTYKRFQAIISRMELPKKPVSSIVSQQMETCKVDIQENHDDVYGVPSLEELGFPTDGLAP 216
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 217 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 276
Query: 117 ELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L ++ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L
Sbjct: 277 RLWELYKKVKRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPWDKNPEAL 336
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLD
Sbjct: 337 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLD 396
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 397 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 432
>gi|380797951|gb|AFE70851.1| cryptochrome-2 isoform 1, partial [Macaca mulatta]
Length = 579
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 145/279 (51%), Positives = 192/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK + TS E C+ + H + + VP+++E+G +
Sbjct: 153 LTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGP 212
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 213 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 272
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 273 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 329
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 330 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 389
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 390 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 428
>gi|344280774|ref|XP_003412157.1| PREDICTED: cryptochrome-2 [Loxodonta africana]
Length = 593
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 143/276 (51%), Positives = 191/276 (69%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK + TS E C+ + H + + VP+++E+G +
Sbjct: 167 LTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGP 226
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 227 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 286
Query: 117 ELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L ++ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L
Sbjct: 287 RLWELYKKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEAL 346
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLD
Sbjct: 347 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLD 406
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 407 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 442
>gi|225875100|emb|CAQ86665.1| cryptochrome [Euphausia superba]
Length = 545
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 142/276 (51%), Positives = 187/276 (67%), Gaps = 11/276 (3%)
Query: 2 TYQKLVSVLESLPKP------KPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIP 55
T+Q ++S +E P P + DA T + + H +++ VPT++E+G + ++
Sbjct: 156 TFQNVLSTMEPPPLPASPVTVRDVGDAFTPIDED-----HDEKYGVPTLEELGFETENLA 210
Query: 56 LCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY 115
+ GGE+EAL RLE L K WV F +P P SL PS T LSPYL+FGCLS R F+
Sbjct: 211 PSIWKGGESEALARLEHHLERKAWVASFGRPKMTPQSLYPSRTGLSPYLRFGCLSARRFF 270
Query: 116 HELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
EL + + P+SL GQ+ WREFYY ++ P FD M+GN IC Q+ WD N + L
Sbjct: 271 AELNDLYRKIKKSPAPLSLHGQLLWREFYYTAATNNPKFDHMEGNPICVQIPWDKNAEAL 330
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+HG+TG+P+IDAIM QLR EGWIH++ARHAVACFLTRGDL++SWEEG VF+ELLLD
Sbjct: 331 AKWAHGRTGFPWIDAIMSQLRKEGWIHNVARHAVACFLTRGDLWVSWEEGMKVFDELLLD 390
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG+WMWLS S+FF QFF Y PV +G+K D
Sbjct: 391 ADWSVNAGSWMWLSCSSFFQQFFHCYCPVRYGRKAD 426
>gi|118572251|sp|Q8QG60.2|CRY2_CHICK RecName: Full=Cryptochrome-2
Length = 582
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 142/276 (51%), Positives = 189/276 (68%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK P + C+ + H D + VP+++E+G +
Sbjct: 157 LTYKRFQAIISRMELPKKPVSSIVSQQMETCKVDIQENHDDVYGVPSLEELGFPTDGLAP 216
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 217 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 276
Query: 117 ELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L ++ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L
Sbjct: 277 RLWELYKKVKRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPWDKNPEAL 336
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLD
Sbjct: 337 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLD 396
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 397 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 432
>gi|297688842|ref|XP_002821877.1| PREDICTED: cryptochrome-2 [Pongo abelii]
Length = 614
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 145/279 (51%), Positives = 192/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK + TS E C+ + H + + VP+++E+G +
Sbjct: 188 LTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGP 247
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 248 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 307
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 308 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 364
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 365 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 424
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 425 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 463
>gi|19772572|gb|AAL46564.1| cryptochrome 2 [Gallus gallus]
Length = 531
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 142/276 (51%), Positives = 189/276 (68%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK P + C+ + H D + VP+++E+G +
Sbjct: 106 LTYKRFQAIISRMELPKKPVSSIVSQQMETCKVDIQENHDDVYGVPSLEELGFPTDGLAP 165
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 166 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 225
Query: 117 ELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L ++ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L
Sbjct: 226 RLWELYKKVKRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPWDKNPEAL 285
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLD
Sbjct: 286 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLD 345
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 346 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 381
>gi|224051116|ref|XP_002198900.1| PREDICTED: cryptochrome-2, partial [Taeniopygia guttata]
Length = 540
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 142/276 (51%), Positives = 189/276 (68%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK P + C+ + H D + VP+++E+G +
Sbjct: 115 LTYKRFQAIISRMELPKKPVSTVISQQMETCKVDIQENHDDVYGVPSLEELGFPTDGLAP 174
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 175 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 234
Query: 117 ELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L ++ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L
Sbjct: 235 RLWELYKKVKRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPWDRNPEAL 294
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLD
Sbjct: 295 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLD 354
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 355 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 390
>gi|147903319|ref|NP_001082139.1| cryptochrome 2a [Xenopus laevis]
gi|46249526|gb|AAH68732.1| LOC398246 protein [Xenopus laevis]
Length = 568
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 141/276 (51%), Positives = 189/276 (68%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P+ PA C+ + H + + VP+++E+G +
Sbjct: 152 LTYKRFQAIISRMEIPRRPAPSVTRQQMEACRAEIKRNHDETYGVPSLEELGFHRENKGS 211
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL RL++ L K WV +E+P NSL S T LSPYL+FGCLS +LFY+
Sbjct: 212 AIWPGGETEALARLDRHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCKLFYY 271
Query: 117 ELKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L+++ + PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N K L
Sbjct: 272 RLQELYRKVKKNNPPPLSLFGQLLWREFFYTAATNNPKFDQMEGNPICVQIPWDKNPKAL 331
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL+ SWE G VF+ELLLD
Sbjct: 332 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLD 391
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 392 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 427
>gi|426368087|ref|XP_004051044.1| PREDICTED: cryptochrome-2 isoform 1 [Gorilla gorilla gorilla]
Length = 614
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 145/279 (51%), Positives = 192/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK + TS E C+ + H + + VP+++E+G +
Sbjct: 188 LTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGP 247
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 248 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 307
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 308 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 364
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 365 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 424
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 425 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 463
>gi|332836250|ref|XP_001160595.2| PREDICTED: cryptochrome-2 isoform 1 [Pan troglodytes]
gi|397473567|ref|XP_003808279.1| PREDICTED: cryptochrome-2 isoform 1 [Pan paniscus]
Length = 614
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 145/279 (51%), Positives = 192/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK + TS E C+ + H + + VP+++E+G +
Sbjct: 188 LTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGP 247
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 248 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 307
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 308 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 364
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 365 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 424
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 425 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 463
>gi|296217987|ref|XP_002755255.1| PREDICTED: cryptochrome-2 isoform 1 [Callithrix jacchus]
Length = 593
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 145/279 (51%), Positives = 192/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK + TS E C+ + H + + VP+++E+G +
Sbjct: 167 LTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGP 226
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 227 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 286
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 287 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 343
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 344 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 403
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 404 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 442
>gi|384248771|gb|EIE22254.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Coccomyxa
subellipsoidea C-169]
Length = 482
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 138/234 (58%), Positives = 180/234 (76%), Gaps = 6/234 (2%)
Query: 41 VPTMKEMGL-DESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTT 98
VP+++E+G DE+S + GGETEAL RL + L++K WV FEKP P + ++P+TT
Sbjct: 196 VPSLRELGYPDEASTDI---KGGETEALARLAEQLSDKGWVAAFEKPKGDPTAFIKPATT 252
Query: 99 VLSPYLKFGCLSVRLFYHELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
VLSP+LKFGCLS RLFY L+++ H+KPPVSLLGQ+ WREFYYV + TPN+ +M
Sbjct: 253 VLSPHLKFGCLSPRLFYEALQRVYKEKKEHSKPPVSLLGQLLWREFYYVAAAHTPNYHRM 312
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+GN IC Q+ WD N ++ AW +TGYP+IDAIM QLR GW+HHLARH VACFLTRGD
Sbjct: 313 EGNPICKQIPWDNNAEFYRAWEESRTGYPWIDAIMAQLRRTGWMHHLARHCVACFLTRGD 372
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LY+SWE+G+ F+ LL+D D ++N+GNWMWLSAS+FF+Q+FRVYSP+ +GKK D
Sbjct: 373 LYVSWEKGRDTFDRLLIDGDPSLNSGNWMWLSASSFFYQYFRVYSPITYGKKYD 426
>gi|15341192|gb|AAK94666.1| cryptochrome 2a [Xenopus laevis]
Length = 501
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 141/276 (51%), Positives = 189/276 (68%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P+ PA C+ + H + + VP+++E+G +
Sbjct: 85 LTYKRFQAIISRMEIPRRPAPSVTRQQMEACRAEIKRNHDETYGVPSLEELGFHRENKGS 144
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL RL++ L K WV +E+P NSL S T LSPYL+FGCLS +LFY+
Sbjct: 145 AIWPGGETEALARLDRHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCKLFYY 204
Query: 117 ELKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L+++ + PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N K L
Sbjct: 205 RLQELYRKVKKNNPPPLSLFGQLLWREFFYTAATNNPKFDQMEGNPICVQIPWDKNPKAL 264
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL+ SWE G VF+ELLLD
Sbjct: 265 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLD 324
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 325 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 360
>gi|387015302|gb|AFJ49770.1| Cryptochrome-2-like [Crotalus adamanteus]
Length = 590
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 143/276 (51%), Positives = 189/276 (68%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK TS E CQ + H + + VP+++E+G +
Sbjct: 162 LTYKRFQAIISRMDLPKKPVSTITSQQMEMCQTKIQENHDETYGVPSLEELGFFTEGLAP 221
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 222 AVWQGGETEALTRLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 281
Query: 117 ELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L ++ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L
Sbjct: 282 RLWELYKKVKRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPWDRNPEAL 341
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHA ACFLTRGDL++SWE G VF+ELLLD
Sbjct: 342 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAAACFLTRGDLWISWESGVRVFDELLLD 401
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 402 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 437
>gi|432090377|gb|ELK23803.1| Cryptochrome-2 [Myotis davidii]
Length = 539
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 147/280 (52%), Positives = 191/280 (68%), Gaps = 13/280 (4%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPT-----SLPRECQGILHPDEHLVPTMKEMGLDESSIP 55
+TY++ +++ + PK + T S P E Q H + + VPT++E+G +
Sbjct: 113 LTYKRFQAIISRMELPKKPVASVTRHQMESCPAEIQEN-HDETYGVPTLEELGFPTEGLG 171
Query: 56 LCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY 115
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY
Sbjct: 172 PAVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFY 231
Query: 116 HEL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
+ L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 232 YRLWDLYKKVKR---NSSPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDHN 288
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+E
Sbjct: 289 PEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDE 348
Query: 232 LLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 349 LLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 388
>gi|380254429|dbj|BAL72539.1| cryptochrome3 [Siganus guttatus]
Length = 507
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 138/276 (50%), Positives = 187/276 (67%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+T+++ +++ L P+ P +C+ + H + +P+++E+G +P
Sbjct: 148 LTFKRFQTIVRRLELPRRPLAPITQQQMDKCRTKIADNHDQLYSIPSLEELGFRTEGLPA 207
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGE+EAL RL K L K WV E P SL S T LSPYL+FGCLS R+ Y+
Sbjct: 208 AVWRGGESEALDRLNKHLDKKVWVANLEHPRVNTCSLYASPTGLSPYLRFGCLSCRVLYY 267
Query: 117 ELKKI-LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L+++ + H+ PP+SL GQ+ WREF+Y ++ PNFD+M+GN IC Q+ WD N + L
Sbjct: 268 NLRELYMKLCKHSSPPLSLFGQLLWREFFYTAATNNPNFDRMEGNPICVQIPWDQNPEAL 327
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ G+TG+P+IDAIM QLR EGWIHH+ARHAVACFLTRGDL++SWE G VFEELLLD
Sbjct: 328 AKWAEGRTGFPWIDAIMTQLRQEGWIHHVARHAVACFLTRGDLWISWESGMKVFEELLLD 387
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 388 ADWSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 423
>gi|241701053|ref|XP_002411902.1| DNA photolyase, putative [Ixodes scapularis]
gi|215504842|gb|EEC14336.1| DNA photolyase, putative [Ixodes scapularis]
Length = 253
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 138/238 (57%), Positives = 169/238 (71%), Gaps = 7/238 (2%)
Query: 48 GLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFG 107
G D ++ +PGGETEAL RLE+ L K WV F P P SL S T LSPYL+FG
Sbjct: 15 GFDTDNLKDAVWPGGETEALARLERHLERKAWVASFGSPKMTPKSLLASQTGLSPYLRFG 74
Query: 108 CLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVD 167
CLS RLFYH+L + + PP+SL GQ+ WREF+Y + PNFD+M N IC Q+
Sbjct: 75 CLSARLFYHQLADLYRKIKKSNPPLSLQGQLLWREFFYCAATRNPNFDRMHNNPICVQIP 134
Query: 168 WDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQS 227
WD N + L W++G+TGYP+IDAIMRQLR EGWIHH+AR+AVACFLTRGDL+LSWEEG
Sbjct: 135 WDVNAEALAKWANGQTGYPWIDAIMRQLREEGWIHHVARYAVACFLTRGDLWLSWEEGMK 194
Query: 228 VFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD-------KFELLLD 278
VF+ELLLDADW++NAG+WMWLS S+FF QFF +Y PV FG+K D FE +L+
Sbjct: 195 VFDELLLDADWSVNAGSWMWLSCSSFFQQFFHLYCPVRFGRKADPSGDFISSFEFILN 252
>gi|444707572|gb|ELW48837.1| Cryptochrome-2 [Tupaia chinensis]
Length = 577
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 143/279 (51%), Positives = 190/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKP-KPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P KP + C+ + H + + VP+++E+G +
Sbjct: 151 LTYKRFQAIISRMELPRKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGP 210
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 211 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 270
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 271 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 327
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 328 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 387
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 388 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 426
>gi|44843616|emb|CAE54427.1| sCRY2L protein [Spalax judaei]
Length = 606
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/279 (52%), Positives = 191/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK A TS E C+ + H D + VP+++E+G +
Sbjct: 180 LTYKRFQAIISRMELPKKPVVAVTSQQMESCRAEIQDNHDDTYGVPSLEELGFPTEGLGP 239
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 240 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 299
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 300 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 356
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACF TRGDL++SWE G VF+EL
Sbjct: 357 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFPTRGDLWVSWESGVRVFDEL 416
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 417 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 455
>gi|110626125|ref|NP_001034685.1| cryptochrome 4 [Gallus gallus]
gi|34500076|gb|AAQ73619.1| cryptochrome-like protein [Gallus gallus]
Length = 529
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 152/283 (53%), Positives = 188/283 (66%), Gaps = 22/283 (7%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPT-------SLPR----ECQGILHPDEHLVPTMKEMGL 49
+TY++ + +L L P+ PT S P EC G+ P + +P
Sbjct: 149 LTYKRFLRILSLLGDPEVPVRNPTAEDFQRCSPPELGLAECYGVPLPTDLKIPP------ 202
Query: 50 DESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCL 109
ES P + GGE+E L+RLE+ LA++ WV F KP T PNSL PSTT LSPY GCL
Sbjct: 203 -ESISP---WRGGESEGLQRLEQHLADQGWVASFTKPKTVPNSLLPSTTGLSPYFSTGCL 258
Query: 110 SVRLFYHELKKILATGPH-AKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDW 168
SVR F++ L I A H + PPVSL GQ+ WREF+Y V S TPNF KM GN IC Q+ W
Sbjct: 259 SVRSFFYRLSNIYAQAKHHSLPPVSLQGQLLWREFFYTVASATPNFTKMAGNPICLQIRW 318
Query: 169 DTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSV 228
+ + L W +TG+P+IDAIM QLR EGWIHHLARHA ACFLTRGDL++SWEEG V
Sbjct: 319 YEDAERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAAACFLTRGDLWISWEEGMKV 378
Query: 229 FEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
FEELLLDAD+++NAGNWMWLSASAFFH + R++ PV FG++TD
Sbjct: 379 FEELLLDADYSINAGNWMWLSASAFFHHYTRIFCPVRFGRRTD 421
>gi|359073433|ref|XP_002693610.2| PREDICTED: cryptochrome-2 [Bos taurus]
Length = 591
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 143/279 (51%), Positives = 190/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKP-KPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P KP + C+ + H + + VP+++E+G +
Sbjct: 165 LTYKRFQAIISRMELPRKPVGSVTSQQMEGCRAEIQESHDETYGVPSLEELGFPTEGLGP 224
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 225 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 284
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 285 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 341
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 342 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 401
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 402 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 440
>gi|395815587|ref|XP_003781307.1| PREDICTED: cryptochrome-2 [Otolemur garnettii]
Length = 612
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 144/279 (51%), Positives = 192/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK + TS E C+ + H + + VP+++E+G +
Sbjct: 186 LTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGP 245
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 246 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 305
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 306 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 362
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 363 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 422
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++N+G+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 423 LLDADFSVNSGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 461
>gi|44843614|emb|CAE54426.1| sCRY2S protein [Spalax judaei]
Length = 591
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/279 (52%), Positives = 191/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK A TS E C+ + H D + VP+++E+G +
Sbjct: 165 LTYKRFQAIISRMELPKKPVVAVTSQQMESCRAEIQDNHDDTYGVPSLEELGFPTEGLGP 224
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 225 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 284
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 285 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 341
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACF TRGDL++SWE G VF+EL
Sbjct: 342 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFPTRGDLWVSWESGVRVFDEL 401
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 402 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 440
>gi|390470436|ref|XP_003734285.1| PREDICTED: cryptochrome-2 isoform 2 [Callithrix jacchus]
Length = 560
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/279 (51%), Positives = 192/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK + TS E C+ + H + + VP+++E+G +
Sbjct: 134 LTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGP 193
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 194 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 253
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 254 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 310
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 311 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 370
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 371 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 409
>gi|426368089|ref|XP_004051045.1| PREDICTED: cryptochrome-2 isoform 2 [Gorilla gorilla gorilla]
Length = 532
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/279 (51%), Positives = 192/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK + TS E C+ + H + + VP+++E+G +
Sbjct: 106 LTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGP 165
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 166 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 225
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 226 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 282
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 283 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 342
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 343 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 381
>gi|332836252|ref|XP_003313049.1| PREDICTED: cryptochrome-2 isoform 2 [Pan troglodytes]
gi|397473569|ref|XP_003808280.1| PREDICTED: cryptochrome-2 isoform 2 [Pan paniscus]
Length = 532
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/279 (51%), Positives = 192/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK + TS E C+ + H + + VP+++E+G +
Sbjct: 106 LTYKRFQAIISRMELPKKPVGSVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGP 165
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 166 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 225
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 226 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 282
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 283 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 342
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 343 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 381
>gi|384080881|dbj|BAM11103.1| cryptochrome 2 (photolyase-like), partial [Siebenrockiella
crassicollis]
Length = 358
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 147/276 (53%), Positives = 190/276 (68%), Gaps = 14/276 (5%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q ++S +E LPK KP + +C+ + H D + VP+++E+G + +
Sbjct: 2 FQAIISRME-LPK-KPVSSITSQQMEKCKSEIQENHDDMYGVPSLEELGFPTDGLAPAVW 59
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL- 118
GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+ L
Sbjct: 60 KGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLW 119
Query: 119 ---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
KK+ T PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L
Sbjct: 120 ELYKKVKRT-----PPLSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPWDRNPEAL 174
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QL+ EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLD
Sbjct: 175 AKWAEGKTGFPWIDAIMTQLKQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLD 234
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 235 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 270
>gi|224073768|ref|XP_002304163.1| predicted protein [Populus trichocarpa]
gi|222841595|gb|EEE79142.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 135/233 (57%), Positives = 179/233 (76%), Gaps = 2/233 (0%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTTV 99
VPT+K++G + F GGE+EALKRL++S+++KEWV FEKP P++ ++P+TTV
Sbjct: 200 VPTIKDLGYGDIEQEWIPFRGGESEALKRLKESISDKEWVANFEKPKGNPSAFVKPATTV 259
Query: 100 LSPYLKFGCLSVRLFYHELKKILAT-GPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMK 158
LSPYLKFGCLS R FY L+ + H PPVSL GQ+ WR+F+Y V TPNFD+M+
Sbjct: 260 LSPYLKFGCLSSRYFYQCLQDVYKNVQKHTSPPVSLAGQLLWRDFFYTVAFGTPNFDRME 319
Query: 159 GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
GNK+C Q+ W+ +++ L AW +TGYP+IDAIM QLR GW+HHLARH+VACFLTRGDL
Sbjct: 320 GNKLCKQIPWNDDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHSVACFLTRGDL 379
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+L WE G+ VFE LL+D+DWA+N GNW+WLS S+FF+Q+ R+YSP++FGKK D
Sbjct: 380 FLHWERGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPISFGKKYD 432
>gi|440895552|gb|ELR47705.1| Cryptochrome-2, partial [Bos grunniens mutus]
Length = 564
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 143/279 (51%), Positives = 190/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKP-KPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P KP + C+ + H + + VP+++E+G +
Sbjct: 138 LTYKRFQAIISRMELPRKPVGSVTSQQMEGCRAEIQESHDETYGVPSLEELGFPTEGLGP 197
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 198 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 257
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 258 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 314
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 315 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 374
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 375 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 413
>gi|403254649|ref|XP_003920073.1| PREDICTED: cryptochrome-2 [Saimiri boliviensis boliviensis]
Length = 593
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 143/279 (51%), Positives = 190/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK P + C+ + H + + VP+++E+G +
Sbjct: 167 LTYKRFQAIISRMELPKKPVGSVTSQQMDSCRAEIQENHDETYGVPSLEELGFPTEGLGP 226
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 227 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 286
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 287 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 343
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 344 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 403
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 404 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 442
>gi|255553063|ref|XP_002517574.1| DNA photolyase, putative [Ricinus communis]
gi|223543206|gb|EEF44738.1| DNA photolyase, putative [Ricinus communis]
Length = 537
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 137/234 (58%), Positives = 178/234 (76%), Gaps = 3/234 (1%)
Query: 41 VPTMKEMGL-DESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTT 98
VPT++E+G D F GGE+EALKRL + + NKEWV FEKP P++ ++P+TT
Sbjct: 200 VPTLEELGYGDVEQDEWAPFRGGESEALKRLREKITNKEWVANFEKPKGDPSAFMKPATT 259
Query: 99 VLSPYLKFGCLSVRLFYHELKKILAT-GPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
VLSPYLKFGCLS R FY L+ + G H PPVSLLGQ+ WR+F+Y V TPNFD+M
Sbjct: 260 VLSPYLKFGCLSSRYFYQCLQDVYKNVGKHTSPPVSLLGQLLWRDFFYTVAFGTPNFDQM 319
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
K N+IC Q+ W+ +++ L AW +TGYP+IDAIM QLR GW+HHLARH VACFLTRGD
Sbjct: 320 KENRICKQIPWNEDDELLSAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGD 379
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
L++ WE+G++VFE LL+D+DWA+N GNW+WLS S+FF+Q+ R+YSP++FGKK D
Sbjct: 380 LFVHWEKGRNVFERLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPISFGKKYD 433
>gi|188536100|ref|NP_066940.2| cryptochrome-2 isoform 1 [Homo sapiens]
gi|194380960|dbj|BAG64048.1| unnamed protein product [Homo sapiens]
Length = 614
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/279 (51%), Positives = 191/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK TS E C+ + H + + VP+++E+G +
Sbjct: 188 LTYKRFQAIISRMELPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGP 247
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 248 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 307
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 308 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 364
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 365 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 424
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 425 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 463
>gi|194673414|ref|XP_585942.4| PREDICTED: cryptochrome-2 [Bos taurus]
gi|296479702|tpg|DAA21817.1| TPA: cryptochrome 2-like [Bos taurus]
Length = 585
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 143/279 (51%), Positives = 190/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKP-KPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P KP + C+ + H + + VP+++E+G +
Sbjct: 159 LTYKRFQAIISRMELPRKPVGSVTSQQMEGCRAEIQESHDETYGVPSLEELGFPTEGLGP 218
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 219 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 278
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 279 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 335
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 336 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 395
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 396 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 434
>gi|3327130|dbj|BAA31633.1| KIAA0658 protein [Homo sapiens]
Length = 589
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/279 (51%), Positives = 191/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK TS E C+ + H + + VP+++E+G +
Sbjct: 163 LTYKRFQAIISRMELPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGP 222
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 223 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 282
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 283 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 339
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 340 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 399
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 400 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 438
>gi|118572252|sp|Q49AN0.2|CRY2_HUMAN RecName: Full=Cryptochrome-2
gi|27469701|gb|AAH41814.1| Cryptochrome 2 (photolyase-like) [Homo sapiens]
gi|119588435|gb|EAW68029.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|119588436|gb|EAW68030.1| cryptochrome 2 (photolyase-like), isoform CRA_a [Homo sapiens]
gi|121647012|gb|ABM64210.1| photolyase-like cryptochrome 2 [Homo sapiens]
gi|167996599|gb|ACA14134.1| growth-inhibiting protein 37 [Homo sapiens]
gi|168267486|dbj|BAG09799.1| cryptochrome-2 [synthetic construct]
gi|325463641|gb|ADZ15591.1| cryptochrome 2 (photolyase-like) [synthetic construct]
Length = 593
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 145/279 (51%), Positives = 191/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK TS E C+ + H + + VP+++E+G +
Sbjct: 167 LTYKRFQAIISRMELPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGP 226
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 227 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 286
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 287 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 343
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 344 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 403
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 404 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 442
>gi|158255956|dbj|BAF83949.1| unnamed protein product [Homo sapiens]
Length = 593
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 143/276 (51%), Positives = 189/276 (68%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK TS E C+ + H + + VP+++E+G +
Sbjct: 167 LTYKRFQAIISRMELPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGP 226
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 227 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 286
Query: 117 ELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L + ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L
Sbjct: 287 RLWDLYKRVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEAL 346
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLD
Sbjct: 347 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLD 406
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 407 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 442
>gi|188536103|ref|NP_001120929.1| cryptochrome-2 isoform 2 [Homo sapiens]
Length = 532
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 145/279 (51%), Positives = 191/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK TS E C+ + H + + VP+++E+G +
Sbjct: 106 LTYKRFQAIISRMELPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGP 165
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 166 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 225
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 226 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 282
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 283 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 342
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 343 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 381
>gi|194378884|dbj|BAG57993.1| unnamed protein product [Homo sapiens]
Length = 461
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 145/279 (51%), Positives = 191/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK TS E C+ + H + + VP+++E+G +
Sbjct: 35 LTYKRFQAIISRMELPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGP 94
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 95 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 154
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 155 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 211
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 212 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 271
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 272 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 310
>gi|193211374|ref|NP_001123208.1| cryptochrome-2 [Ovis aries]
gi|156763811|gb|ABS44876.1| cryptochrome 2 [Ovis aries]
Length = 596
Score = 293 bits (751), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 141/276 (51%), Positives = 188/276 (68%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKP-KPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P KP + CQ + H + + VP+++E+G +
Sbjct: 170 LTYKRFQAIISRMELPRKPVGSVTSQQMEGCQAEIQESHDETYGVPSLEELGFPTEGLGP 229
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P +SL S T LSPYL+FGCLS RLFY+
Sbjct: 230 AVWRGGETEALARLDKHLERKAWVASYERPRMNASSLLASPTGLSPYLRFGCLSCRLFYY 289
Query: 117 ELKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L + ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L
Sbjct: 290 RLWDLYRKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEAL 349
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLD
Sbjct: 350 AKWAEGKTGFPWIDAIMAQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLD 409
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 410 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 445
>gi|449271617|gb|EMC81901.1| Cryptochrome-1 [Columba livia]
Length = 525
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 148/277 (53%), Positives = 186/277 (67%), Gaps = 10/277 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHL-----VPTMKEMGLDESSIP 55
+TY++ + +L L P+ T+ + Q + P+ L VP ++ + S
Sbjct: 149 LTYKRFLHILSQLGDPEVPVRNLTA--EDFQRCMSPEPGLAERYRVPVPADLEIPPQS-- 204
Query: 56 LCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY 115
L + GGETE L+RLE+ L ++ WV F KP T PNSL PSTT LSPY GCLSVR F+
Sbjct: 205 LSPWTGGETEGLRRLEQHLTDQGWVANFTKPRTIPNSLLPSTTGLSPYFSMGCLSVRTFF 264
Query: 116 HELKKILATGPH-AKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKY 174
L I A H + PPVSL GQ+ WREF+Y V S T NF +M GN IC Q+ W + +
Sbjct: 265 QRLSNIYAQAKHHSLPPVSLQGQLLWREFFYTVASATQNFTQMAGNPICLQIHWYEDAER 324
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
L W +TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLL
Sbjct: 325 LHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLL 384
Query: 235 DADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DAD+++NAGNWMWLSASAFFH + R++ PV FGK+TD
Sbjct: 385 DADYSINAGNWMWLSASAFFHHYTRIFCPVRFGKRTD 421
>gi|327259731|ref|XP_003214689.1| PREDICTED: cryptochrome-2-like [Anolis carolinensis]
Length = 586
Score = 293 bits (750), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 142/276 (51%), Positives = 191/276 (69%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK + T E C+ + H + + VP+++E+G S+
Sbjct: 155 LTYKRFQTIISRMDLPKKPVASITHQQMEMCKTEIQDNHDETYGVPSLEELGFPTESLAP 214
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 215 AVWLGGETEALTRLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 274
Query: 117 ELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L ++ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L
Sbjct: 275 RLWELYKKVKRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPWDRNPEAL 334
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLD
Sbjct: 335 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLD 394
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++N+G+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 395 ADFSVNSGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 430
>gi|157130453|ref|XP_001655724.1| DNA photolyase [Aedes aegypti]
gi|108881984|gb|EAT46209.1| AAEL002602-PA [Aedes aegypti]
Length = 321
Score = 293 bits (750), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 144/270 (53%), Positives = 184/270 (68%), Gaps = 3/270 (1%)
Query: 3 YQKLVSVLESLPKPKPADDAPT-SLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPG 61
+Q +++ +++ P+P+PA T + Q H D++ VPT++E+G + + +
Sbjct: 33 FQAIIASMDAPPQPEPAITLDTIANATTPQYEDHDDKYGVPTLEELGFETEGLKPLIWVR 92
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GETEAL RLE+ L K WV F +P P SL T LSPYL+FGCLS RLFY++L +
Sbjct: 93 GETEALARLERHLERKAWVASFGRPKMTPQSLLARQTGLSPYLRFGCLSTRLFYYQLTDL 152
Query: 122 LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
A PP+SL GQ+ WREF+Y + PNFDKM GN IC Q+ WD N + L W+ G
Sbjct: 153 YKKIKKACPPLSLYGQLLWREFFYCAATKNPNFDKMAGNPICVQISWDRNAEALAKWASG 212
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++S EEG VFEELLLDADW++N
Sbjct: 213 QTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISCEEGMKVFEELLLDADWSVN 272
Query: 242 AGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AG MWLS S+FF QFF Y PV FG+K D
Sbjct: 273 AG--MWLSCSSFFQQFFHCYCPVKFGRKAD 300
>gi|348523572|ref|XP_003449297.1| PREDICTED: cryptochrome-2-like [Oreochromis niloticus]
Length = 672
Score = 293 bits (750), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 142/276 (51%), Positives = 183/276 (66%), Gaps = 12/276 (4%)
Query: 3 YQKLVSVLESLPKPKPA------DDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPL 56
+Q +VS LE +P P D T + G H + +P+++E+G + +P
Sbjct: 153 FQTIVSRLELPRRPLPPITQQQMDKCHTKI-----GDNHDQLYSIPSLEELGFRTAGLPP 207
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGE++AL RL K L K WV E P SL S T LSPYL+FGCLS R+ Y+
Sbjct: 208 AVWRGGESQALDRLSKHLDKKVWVTSLEHPRVNTCSLYASPTGLSPYLRFGCLSCRVLYY 267
Query: 117 ELKKI-LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L+++ + PP+SL GQ+ WREF+Y ++ PNFD+M GN IC Q+ WD N + L
Sbjct: 268 NLRELYMKVRKRCSPPLSLFGQLLWREFFYTAATNNPNFDRMDGNPICVQIPWDQNPEAL 327
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VFEELLLD
Sbjct: 328 AKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGMKVFEELLLD 387
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 388 ADWSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 423
>gi|395543767|ref|XP_003775403.1| PREDICTED: LOW QUALITY PROTEIN: cryptochrome-2 [Sarcophilus
harrisii]
Length = 597
Score = 293 bits (749), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 143/279 (51%), Positives = 186/279 (66%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKP-KPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P KP CQ + H + + VP+++E+G +
Sbjct: 171 LTYKRFQAIISRMELPRKPVSGVTRQQMERCQAEIREDHDEAYGVPSLEELGFPTDGLGP 230
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P SL S T LSPYL+FGCLS RLFY+
Sbjct: 231 AVWQGGETEALARLDKHLERKAWVANYERPRMNATSLLASPTGLSPYLRFGCLSCRLFYY 290
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 291 RLWELYKKVKRNN---TPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPWDRNP 347
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 348 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 407
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 408 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 446
>gi|71297422|gb|AAH35161.1| CRY2 protein [Homo sapiens]
Length = 461
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 144/279 (51%), Positives = 190/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK TS E C+ + H + + VP+++E+G +
Sbjct: 35 LTYKRFQAIISRMELPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGP 94
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 95 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 154
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 155 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 211
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 212 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 271
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS AFF QFF Y PV FG++TD
Sbjct: 272 LLDADFSVNAGSWMWLSCGAFFQQFFHCYCPVGFGRRTD 310
>gi|168002746|ref|XP_001754074.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens
subsp. patens]
gi|162694628|gb|EDQ80975.1| UVR3 AtUVR3-like 6-4 DNA photolyase protein [Physcomitrella patens
subsp. patens]
Length = 526
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 152/290 (52%), Positives = 196/290 (67%), Gaps = 27/290 (9%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPT--MKEMG---LDESSIP 55
+TYQ + + P P AP +P + + D H+VP ++++G LDE P
Sbjct: 157 LTYQAFLKLTGKPPLPV---TAPLQIPSPPEDL--NDVHVVPVPKLEDLGYVNLDEEFSP 211
Query: 56 LCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTTVLSPYLK--------- 105
PGGETEAL+RL+KSL N++WV FEKP P + +EP+TTVLSPYLK
Sbjct: 212 ---HPGGETEALRRLDKSLVNQKWVCDFEKPKGNPTAFIEPATTVLSPYLKASNLGFLLK 268
Query: 106 ---FGCLSVRLFYHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNK 161
FGCLS RLF+ L + + H+ PPVSL GQ+ WREF+Y G TPNFD+M GN
Sbjct: 269 PMLFGCLSCRLFHQRLLAVYSQNKKHSSPPVSLEGQLLWREFFYTAGYGTPNFDRMLGNP 328
Query: 162 ICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLS 221
IC Q+ W +++ L AW G+TGYP+IDA M QLR GW+HHLARHAVACFLTRGD+++
Sbjct: 329 ICKQIPWKDDDRLLAAWRDGQTGYPWIDAAMVQLRKWGWMHHLARHAVACFLTRGDMFVY 388
Query: 222 WEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
WE+G+ VF+ LL+D+DWA+N GNW+WLSASAFFHQ+ R+YSPV FGKK D
Sbjct: 389 WEKGRDVFDRLLIDSDWAINNGNWLWLSASAFFHQYHRIYSPVTFGKKYD 438
>gi|37521318|ref|NP_924695.1| photolyase [Gloeobacter violaceus PCC 7421]
gi|35212315|dbj|BAC89690.1| photolyase [Gloeobacter violaceus PCC 7421]
Length = 490
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 143/274 (52%), Positives = 191/274 (69%), Gaps = 7/274 (2%)
Query: 2 TYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKF-- 59
TY + L +P +P+ LP G L D + +PT+ E+G + P
Sbjct: 148 TYGAFGRLAAKLGEPDAPVASPSHLP--PPGELDAD-YGIPTLAELGYPDPECPSRGIIP 204
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTVLSPYLKFGCLSVRLFYHEL 118
PGGE E L+RL L++++ F KP+T P + +P STT L +LKFGCLS R FY E+
Sbjct: 205 PGGEGEGLRRLHVYLSDRQRSAGFAKPDTDPTAFDPPSTTALGAHLKFGCLSARTFYAEV 264
Query: 119 KKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEA 177
+K+ G H +PP+SL+GQI WREF+Y VG TPN+D+++GN +C Q+ WD N +YL A
Sbjct: 265 QKVYREVGEHTEPPMSLIGQILWREFFYTVGYATPNYDRIEGNPVCRQIPWDDNPEYLAA 324
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
WS +TG+P+IDA M QLR EGW+HHL+RHAVACFLTRGDL++SWE+GQ+VFE LLLD D
Sbjct: 325 WSEARTGFPWIDAAMTQLRTEGWLHHLSRHAVACFLTRGDLWVSWEKGQAVFERLLLDQD 384
Query: 238 WAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
W++NA NWMWLSASAFF+ ++RVYSP++F KK D
Sbjct: 385 WSLNASNWMWLSASAFFNAYYRVYSPISFAKKYD 418
>gi|449491122|ref|XP_004158807.1| PREDICTED: (6-4)DNA photolyase-like [Cucumis sativus]
Length = 544
Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 138/234 (58%), Positives = 178/234 (76%), Gaps = 3/234 (1%)
Query: 41 VPTMKEMGL-DESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTT 98
VPT+K++G D + F GGETEALKRL++S++NK+WV KFEKP P++ L+P+TT
Sbjct: 199 VPTIKDLGYEDMAKDDWTPFRGGETEALKRLKESMSNKDWVAKFEKPKGDPSAFLKPATT 258
Query: 99 VLSPYLKFGCLSVRLFYHELKKILAT-GPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
VLSPYLKFGCLS R FY +++I H PPVSL+GQ+ WREF+Y TPNFD+M
Sbjct: 259 VLSPYLKFGCLSSRYFYQCIQEIYKNVKGHTSPPVSLVGQLLWREFFYTAAFGTPNFDRM 318
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
K NKIC Q+ W+ + + L AW +TG+P+IDAIM QLR GW+HHLARH VACFLTRGD
Sbjct: 319 KDNKICKQIPWNDDNELLAAWRDARTGFPWIDAIMVQLRKWGWMHHLARHCVACFLTRGD 378
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
L++ WE+G+ VFE LL+D+DWA+N NW+WLS S+FF+Q+ RVYSP+ FGKK D
Sbjct: 379 LFVHWEKGRDVFERLLIDSDWAINNANWLWLSCSSFFYQYNRVYSPITFGKKYD 432
>gi|443710319|gb|ELU04573.1| hypothetical protein CAPTEDRAFT_178510 [Capitella teleta]
Length = 597
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 140/276 (50%), Positives = 182/276 (65%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESL-PKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +L + P P+P + + + H D++ VPT++++G D ++
Sbjct: 163 LTYKRFQRILARMDPPPRPVEAVTSVTIGSVVTPINSDHDDQYGVPTLEDLGFDTDNLEA 222
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL++ L K WV FEKP P SL S T LSPYL+FGCLS RLFY
Sbjct: 223 AVWKGGETEALSRLDRHLERKAWVASFEKPKMTPQSLMASPTGLSPYLRFGCLSTRLFYW 282
Query: 117 ELKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L + P+S+ GQ+ WREF+Y ++ P FD+M GN IC QV WD N + L
Sbjct: 283 RLTDLYRKVKKRTDMPLSIHGQLLWREFFYTAATNNPKFDRMVGNPICVQVPWDKNPEAL 342
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ KTG+P+IDAIM QLR EGWIHHLARH+VACFLTRGDL++SWEEG VFEE LLD
Sbjct: 343 AKWAECKTGFPWIDAIMTQLRQEGWIHHLARHSVACFLTRGDLWISWEEGMKVFEEQLLD 402
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW++NAG W+WLS S+FF QFF Y P +FG+K D
Sbjct: 403 ADWSINAGMWLWLSCSSFFQQFFHTYCPASFGRKAD 438
>gi|149725124|ref|XP_001490350.1| PREDICTED: cryptochrome-2-like [Equus caballus]
Length = 579
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 139/276 (50%), Positives = 186/276 (67%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKP-KPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P KP + C+ + H + + VP+++E+G +
Sbjct: 158 LTYKRFQAIISRMELPRKPVGSVTSQQMESCRADIQENHDETYGVPSLEELGFPTEGLGP 217
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P SL S T LSPYL+FGCLS RLFY+
Sbjct: 218 AVWQGGETEALARLDKHLERKAWVANYERPRMNAASLLASPTGLSPYLRFGCLSCRLFYY 277
Query: 117 ELKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L + ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L
Sbjct: 278 RLWDLYRKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEAL 337
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ KTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLD
Sbjct: 338 AKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLD 397
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 398 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 433
>gi|302795740|ref|XP_002979633.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
gi|300152881|gb|EFJ19522.1| hypothetical protein SELMODRAFT_233387 [Selaginella moellendorffii]
Length = 527
Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 144/275 (52%), Positives = 192/275 (69%), Gaps = 7/275 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHL-VPTMKEMGLDESSIPLCKF 59
+T+Q L +P KP + P+++P G LH + + VPT++E+G + F
Sbjct: 154 LTFQSFCKNL--VPATKPIGNGPSAIPP--TGDLHGIKVVPVPTLEELGYADFHEDFSPF 209
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTTVLSPYLKFGCLSVRLFYHEL 118
GGET AL RLE SLAN++WV +FEKP P + ++P+TTVLSPYLKFGCLS RL Y +
Sbjct: 210 RGGETVALTRLEDSLANEKWVCEFEKPKGDPTAFIKPATTVLSPYLKFGCLSSRLVYSRV 269
Query: 119 KKILATGPH-AKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEA 177
K++ + PPVSL Q+ WREF+Y T NFDKM GN IC Q+ W +++ L A
Sbjct: 270 KEVYSRAKSFTSPPVSLEAQLLWREFFYTAAYATANFDKMVGNPICKQIPWKDDDELLSA 329
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W G+TGYP+IDA M QLR GW+HHLARHAVACFLTRGD+++ WE+G+ VF+ LL+DAD
Sbjct: 330 WRDGRTGYPWIDAAMTQLRKWGWMHHLARHAVACFLTRGDMFVYWEKGRDVFDRLLIDAD 389
Query: 238 WAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
W++N GNW+WLSASAFF+Q+ R+YSP+ F KK D+
Sbjct: 390 WSINNGNWLWLSASAFFNQYHRIYSPITFAKKYDR 424
>gi|302791750|ref|XP_002977641.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii]
gi|300154344|gb|EFJ20979.1| hypothetical protein SELMODRAFT_417535 [Selaginella moellendorffii]
Length = 433
Score = 290 bits (742), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 144/275 (52%), Positives = 191/275 (69%), Gaps = 7/275 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHL-VPTMKEMGLDESSIPLCKF 59
+T+Q L +P KP + P+S+P G LH + + VPT++E+G + F
Sbjct: 146 LTFQSFCKNL--VPATKPIGNGPSSIPP--TGDLHGIKVVPVPTLEELGYTDFHEDFSPF 201
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTTVLSPYLKFGCLSVRLFYHEL 118
GGET L RLE SLAN++WV +FEKP P + ++P+TTVLSPYLKFGCLS RLFY +
Sbjct: 202 RGGETVGLTRLEDSLANEKWVCEFEKPKGDPTAFIKPATTVLSPYLKFGCLSSRLFYSRV 261
Query: 119 KKILATGPH-AKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEA 177
K++ + PPVSL Q+ WREF+Y T NFDKM GN C Q+ W +++ L A
Sbjct: 262 KEVYSRAKSFTSPPVSLEAQLLWREFFYTAAYATANFDKMVGNPTCKQIPWKDDDELLSA 321
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W G+TGYP+IDA M QLR GW+HHLARHAVACFLTRGD+++ WE+G+ VF+ LL+DAD
Sbjct: 322 WRDGRTGYPWIDAAMTQLRKWGWMHHLARHAVACFLTRGDMFVYWEKGRDVFDRLLIDAD 381
Query: 238 WAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
W++N GNW+WLSASAFF+Q+ R+YSP+ F KK D+
Sbjct: 382 WSINNGNWLWLSASAFFNQYHRIYSPITFAKKYDR 416
>gi|326933621|ref|XP_003212899.1| PREDICTED: cryptochrome-1-like [Meleagris gallopavo]
Length = 530
Score = 290 bits (741), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 148/279 (53%), Positives = 188/279 (67%), Gaps = 13/279 (4%)
Query: 1 MTYQKLVSVLESLPKPK------PADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSI 54
+TY++ + +L L P+ A+D P E + + + VP ++ + SI
Sbjct: 149 LTYKRFLHILSLLGDPEMPIRNLTAEDFQRCSPPE---LCLAECYRVPLPTDLKIPPESI 205
Query: 55 PLCKFPGGETEALKRLEKSLANKE-WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRL 113
+ GGE+E L+RLE+ LA++ WV F KP T PNSL PSTT LSPY GCLSVR
Sbjct: 206 --SPWRGGESEGLQRLEQHLADRSGWVASFTKPKTVPNSLLPSTTGLSPYFSMGCLSVRS 263
Query: 114 FYHELKKILATGPH-AKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
F++ L I A H + PPVSL GQ+ WREF+Y V S TPNF KM GN IC Q+ W +
Sbjct: 264 FFYRLSNIYAQAKHHSLPPVSLQGQLLWREFFYTVASATPNFTKMAGNPICLQIRWYEDA 323
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W +TG+P+IDAIM QLR EGWIHHLARHA ACFLTRGDL++SWEEG VFEEL
Sbjct: 324 ERLHRWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAAACFLTRGDLWISWEEGMKVFEEL 383
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAGNWMWLSASAFFH + R++ PV FG++TD
Sbjct: 384 LLDADYSINAGNWMWLSASAFFHHYTRIFCPVRFGRRTD 422
>gi|307103112|gb|EFN51376.1| hypothetical protein CHLNCDRAFT_7260, partial [Chlorella
variabilis]
Length = 491
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 136/235 (57%), Positives = 176/235 (74%), Gaps = 5/235 (2%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTTV 99
VP++ ++G + F GGE+ AL R+ L++K WV FEKP P + + PSTTV
Sbjct: 191 VPSLTDIGYPPTGT--TPFKGGESAALARMADYLSDKGWVCAFEKPKGNPAAFVRPSTTV 248
Query: 100 LSPYLKFGCLSVRLFYHELKKILA--TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
LSPYLKFGCLS RLF+ +L++I A G H +PPVSL GQ+ WREF+ + G+ PNFD+M
Sbjct: 249 LSPYLKFGCLSPRLFHAKLQQIYAERNGMHTQPPVSLRGQLLWREFFTLCGAAIPNFDRM 308
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
GN IC Q+ W + + + AW H +TGYP+IDAIM QLR +GW+HHLARH+VACFLTRGD
Sbjct: 309 AGNPICKQIPWVDDPERIAAWEHSRTGYPWIDAIMAQLRQQGWMHHLARHSVACFLTRGD 368
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
L+ SWE GQ+VF++ L+DADW++NA NW WLSASAFF Q+FRVYSP+AFGK+ DK
Sbjct: 369 LWCSWEAGQAVFDKYLIDADWSLNAANWQWLSASAFFSQYFRVYSPIAFGKQYDK 423
>gi|432863953|ref|XP_004070204.1| PREDICTED: cryptochrome-2-like [Oryzias latipes]
Length = 667
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 141/272 (51%), Positives = 181/272 (66%), Gaps = 4/272 (1%)
Query: 3 YQKLVSVLESLPKPKPA--DDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFP 60
+Q +VS LE +P PA S R+ G H + +P+++E+G +P +
Sbjct: 153 FQTIVSRLELPRRPLPAITQQQMDSCQRQI-GDNHDQLYSIPSLEELGFRTERLPPAVWR 211
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKK 120
GGE+EAL RL K L K WV E SL S T LSPYL+FGCLS R+ Y+ L++
Sbjct: 212 GGESEALDRLSKHLDKKVWVASVEHTRVNKCSLYASPTGLSPYLRFGCLSCRVLYYNLRE 271
Query: 121 I-LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
+ + PP+SL GQ+ WREF+Y ++ PNFD+M+GN IC Q+ WD N + L W+
Sbjct: 272 LYMKLRKRCSPPLSLFGQLLWREFFYTAATNNPNFDRMEGNPICVQIPWDQNPEALAKWA 331
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SW G VFEELLLDA W+
Sbjct: 332 EGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWVSGMKVFEELLLDAGWS 391
Query: 240 MNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 392 VNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 423
>gi|410994568|gb|AFV96168.1| cryptochrome 2 [Talitrus saltator]
Length = 565
Score = 286 bits (732), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 131/237 (55%), Positives = 165/237 (69%)
Query: 35 HPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLE 94
H D++ VP ++ +G + +P + GGETEAL RL+ L K WV F +P P SL
Sbjct: 234 HDDKYGVPNLEHLGFETEHLPPAVWKGGETEALSRLKHHLERKAWVASFGRPKMTPQSLF 293
Query: 95 PSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
T LSPYL+FGCLS R FY EL + PVSL G + WREF+Y ++ P F
Sbjct: 294 ACPTGLSPYLRFGCLSARKFYTELNVLYTKIKKVPAPVSLHGHLLWREFFYTAATNNPKF 353
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
D MKGN IC Q+ WD N + L W+HG+TG+P+IDAIM QLR EGWIH++ARHAVACFLT
Sbjct: 354 DHMKGNPICVQIPWDKNPEALAKWAHGQTGFPWIDAIMTQLRTEGWIHNVARHAVACFLT 413
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
RG+L++SWEEG VF+ELLLDADW++NAG+WMWLS S+FF QFF Y PV +G+K D
Sbjct: 414 RGNLWVSWEEGMKVFDELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVRYGRKAD 470
>gi|301609141|ref|XP_002934138.1| PREDICTED: cryptochrome-2 [Xenopus (Silurana) tropicalis]
Length = 531
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 132/213 (61%), Positives = 161/213 (75%), Gaps = 1/213 (0%)
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RL++ L K WV +E+P NSL S T LSPYL+FGCLS RLFY+ LK
Sbjct: 176 PGGETEALARLDRHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLK 235
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
++ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N K L W
Sbjct: 236 ELYKKVKKNSPPPLSLYGQLLWREFFYTAATNNPKFDQMEGNPICVQIPWDKNPKALAKW 295
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL+ SWE G VF+ELLLDAD+
Sbjct: 296 AEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWNSWECGVKVFDELLLDADF 355
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 356 SVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 388
>gi|156752080|gb|ABU93792.1| cryptochrome 3 [Carassius auratus]
Length = 237
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 132/212 (62%), Positives = 160/212 (75%), Gaps = 1/212 (0%)
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKK 120
GGETEAL+RL K L K WV FE+P SL S T LSPYL+FGCLS R+FY+ L +
Sbjct: 12 GGETEALERLNKHLDRKAWVANFERPRITAQSLFASPTGLSPYLRFGCLSCRVFYYNLWE 71
Query: 121 I-LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
+ + + PP+SL GQ+ WREF+Y G++ PNFD M+GN IC Q+ WD N + L W+
Sbjct: 72 LYMKLRRSSSPPLSLFGQLLWREFFYTAGTNNPNFDHMEGNPICVQIPWDHNPEALAKWA 131
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VFEELLLDADW+
Sbjct: 132 EGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGMKVFEELLLDADWS 191
Query: 240 MNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 192 VNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 223
>gi|170070074|ref|XP_001869456.1| cryptochrome 2 [Culex quinquefasciatus]
gi|167866000|gb|EDS29383.1| cryptochrome 2 [Culex quinquefasciatus]
Length = 828
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 139/270 (51%), Positives = 179/270 (66%), Gaps = 21/270 (7%)
Query: 3 YQKLVSVLESLPKPKPADD-APTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPG 61
+Q +++ +++ P+P+PA A Q H D++ VPT++E+G + + + G
Sbjct: 198 FQAIIASMDAPPQPEPAITLAAIGRAVTPQCDDHDDKYGVPTLEELGFETEGLKPPIWVG 257
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GETEAL RLE+ L + T LSPYL+FGCLS RLFY++L +
Sbjct: 258 GETEALARLERHLGTQ--------------------TGLSPYLRFGCLSTRLFYYQLTDL 297
Query: 122 LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
A PP+SL GQ++WREF+Y + PNFDKM GN IC Q+ WD N + L W+ G
Sbjct: 298 YKKIKKAYPPLSLHGQLFWREFFYCAATKNPNFDKMAGNPICVQIPWDRNAEALAKWASG 357
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW++N
Sbjct: 358 QTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVN 417
Query: 242 AGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AG WMWLS S+FF QFF Y PV FG+K D
Sbjct: 418 AGMWMWLSCSSFFQQFFHCYCPVKFGRKAD 447
>gi|317106754|dbj|BAJ53248.1| JHL25H03.11 [Jatropha curcas]
Length = 536
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 132/234 (56%), Positives = 175/234 (74%), Gaps = 3/234 (1%)
Query: 41 VPTMKEMGL-DESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTT 98
VPT++E+G D F GGE+EALK L +S+ +KEW+ FEKP P++ ++P+TT
Sbjct: 199 VPTVEELGYGDVEQDEWTPFRGGESEALKSLRESIKDKEWIANFEKPKGDPSAFVKPATT 258
Query: 99 VLSPYLKFGCLSVRLFYHELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
VLSPYLKFGCLS R F+ L+ + H PPVSL+GQ+ WR+F+Y V TPNFD+M
Sbjct: 259 VLSPYLKFGCLSSRYFFQCLQDVYRNVKKHTSPPVSLVGQLLWRDFFYTVAFGTPNFDQM 318
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
K N+IC Q+ W+ + + L AW +TGYP+IDAIM QLR GW+HHLARH VACFLTRGD
Sbjct: 319 KDNRICKQIPWNEDTELLAAWRDARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGD 378
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
L++ WE+G+ VFE LL+D+DWA+N GNW+WLS S+FF+Q+ R+YSP++FGKK D
Sbjct: 379 LFVHWEKGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQYNRIYSPISFGKKYD 432
>gi|145346348|ref|XP_001417651.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577879|gb|ABO95944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 562
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 151/328 (46%), Positives = 198/328 (60%), Gaps = 61/328 (18%)
Query: 2 TYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLV---------PTMKEMGL--- 49
TY + + +++ + P A DAP ++P G + LV PT++E+G
Sbjct: 157 TYSQFLKIVDKMGAPAAALDAPKAMPAPFTGTAEETKELVAGVADAYGIPTLEELGYEAM 216
Query: 50 --DESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSL-------------- 93
DE + GGETE L+RL + L+ EWV F+KP+T P +L
Sbjct: 217 HDDEGFQAI----GGETEGLRRLRRQLSRTEWVHTFQKPDTNPTTLFHALGAKKPKPKSP 272
Query: 94 -------------------------EPSTTVLSPYLKFGCLSVRLFYHELKKILAT---- 124
PSTT LSPY+KFGC+S R+FYHEL +LA
Sbjct: 273 FEIAARDAGSKNDATNTAANSDMLMTPSTTALSPYMKFGCVSPRVFYHELNAVLAKFEGK 332
Query: 125 GPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTG 184
G ++PPVSL+GQ+ WREFYY+VG+ TPNFDKM+GN IC Q+ W+ + + AW + +TG
Sbjct: 333 GQPSQPPVSLMGQLMWREFYYLVGAGTPNFDKMEGNPICRQIPWNKDRELFAAWENAQTG 392
Query: 185 YPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGN 244
+P+IDA M QLRLEGWIHHLARHAVACFLTRGDL++ WE G+ F+ L+DADWA+N GN
Sbjct: 393 FPWIDAAMTQLRLEGWIHHLARHAVACFLTRGDLFVHWEWGRDTFDRDLVDADWALNNGN 452
Query: 245 WMWLSASAFFHQFFRVYSPVAFGKKTDK 272
WMWLS S FF+Q+FRVY P +F KK DK
Sbjct: 453 WMWLSCSCFFYQYFRVYGPHSFAKKYDK 480
>gi|403373370|gb|EJY86604.1| Cryptochrome 5 [Oxytricha trifallax]
Length = 570
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 133/260 (51%), Positives = 184/260 (70%), Gaps = 2/260 (0%)
Query: 13 LPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEK 72
L KPK P + + + + + VP++ ++ +E + F GGET+AL+ +E+
Sbjct: 168 LDKPKELPQLPNNYEKLLKHLKIEYSNDVPSISDLDRNEKDV-TTHFIGGETKALEIMEE 226
Query: 73 SLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPV 132
+ +K V F KP T+PNSL+PSTT LSPYLKFGCLS+RLF+ ++K +L + +PPV
Sbjct: 227 YIKDKRRVNSFSKPFTSPNSLKPSTTALSPYLKFGCLSIRLFHEKVKSVLRSDC-TQPPV 285
Query: 133 SLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIM 192
SL+GQIYWREF+Y NF M+GN +C Q++W+ +E+ ++ W G+TG+P IDA+M
Sbjct: 286 SLIGQIYWREFFYAKSYTVKNFHFMQGNPLCKQINWNKDEEIIKKWEMGQTGFPAIDAVM 345
Query: 193 RQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASA 252
QLR EGW+HHLARH VACFLTRG LY WE G+ VF++ LLDAD+A+N NWMWLS SA
Sbjct: 346 NQLRQEGWMHHLARHLVACFLTRGHLYQHWERGRDVFDKYLLDADYALNNANWMWLSCSA 405
Query: 253 FFHQFFRVYSPVAFGKKTDK 272
FF Q+++VYSPV+F +KTDK
Sbjct: 406 FFSQYWKVYSPVSFFQKTDK 425
>gi|449436599|ref|XP_004136080.1| PREDICTED: (6-4)DNA photolyase-like [Cucumis sativus]
Length = 549
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 136/239 (56%), Positives = 177/239 (74%), Gaps = 8/239 (3%)
Query: 41 VPTMKEMGL-DESSIPLCKFPGGETEALKRLEKSLAN-----KEWVRKFEKPNTAPNS-L 93
VPT+K++G D + F GGETEALKRL++S++ ++WV KFEKP P++ L
Sbjct: 199 VPTIKDLGYEDMAKDDWTPFRGGETEALKRLKESMSFLIGSLQDWVAKFEKPKGDPSAFL 258
Query: 94 EPSTTVLSPYLKFGCLSVRLFYHELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTP 152
+P+TTVLSPYLKFGCLS R FY +++I H PPVSL+GQ+ WREF+Y TP
Sbjct: 259 KPATTVLSPYLKFGCLSSRYFYQCIQEIYKNVKGHTSPPVSLVGQLLWREFFYTAAFGTP 318
Query: 153 NFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
NFD+MK NKIC Q+ W+ + + L AW +TG+P+IDAIM QLR GW+HHLARH VACF
Sbjct: 319 NFDRMKDNKICKQIPWNDDNELLAAWRDARTGFPWIDAIMVQLRKWGWMHHLARHCVACF 378
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LTRGDL++ WE+G+ VFE LL+D+DWA+N NW+WLS S+FF+Q+ RVYSP+ FGKK D
Sbjct: 379 LTRGDLFVHWEKGRDVFERLLIDSDWAINNANWLWLSCSSFFYQYNRVYSPITFGKKYD 437
>gi|390355184|ref|XP_785873.3| PREDICTED: cryptochrome-1-like [Strongylocentrotus purpuratus]
Length = 754
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 131/238 (55%), Positives = 168/238 (70%), Gaps = 1/238 (0%)
Query: 35 HPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLE 94
H D++ +PT++E+G D +P + GGETEA +RL++ L K WV FE+P +P SL
Sbjct: 201 HEDKYGIPTLEELGFDPEDVPPPMWIGGETEAKQRLDRHLERKAWVANFERPRMSPASLM 260
Query: 95 PSTTVLSPYLKFGCLSVRLFYHELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPN 153
S LSPYL+FGCLS R FY +L ++ P+SL GQ+ WREF++ V +
Sbjct: 261 ASPAGLSPYLRFGCLSPRTFYWKLTELYQKVRKTTNTPLSLHGQLLWREFFFTVACNNRQ 320
Query: 154 FDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
FD M N IC Q+ WD N L W++G+TGYP+IDAIM QLRLEGWIH LARHAVACFL
Sbjct: 321 FDHMVDNPICIQIPWDKNTALLNKWANGETGYPWIDAIMTQLRLEGWIHPLARHAVACFL 380
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
TRGDL++SWEEG VF+E LLDADW++NAGNW+WLS S+F+ QFF Y PV FG++TD
Sbjct: 381 TRGDLWISWEEGMKVFDEYLLDADWSVNAGNWIWLSCSSFYQQFFHCYCPVKFGRRTD 438
>gi|303283874|ref|XP_003061228.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457579|gb|EEH54878.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 559
Score = 280 bits (717), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 144/283 (50%), Positives = 179/283 (63%), Gaps = 44/283 (15%)
Query: 31 QGILHPDEHLVPTMKEMGL----DESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKP 86
+ ++ E VPT++E+G D+ P GGETE L RL + L+ K W+ +F+KP
Sbjct: 197 EDVVSSAEVGVPTLEELGYPELPDDEGFPA---RGGETEGLDRLRRMLSRKTWIAEFQKP 253
Query: 87 NTAPNSL-----------------------------------EPSTTVLSPYLKFGCLSV 111
T+P SL PSTT LSPYLKFGC+S
Sbjct: 254 MTSPTSLWAVVGADGKTQKPANPFEAASKASKSKTVGAEAFLAPSTTALSPYLKFGCVSP 313
Query: 112 RLFYHELKKIL--ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWD 169
R FYHELK +L A G H+ PPVSL GQ+ WREFYY+ TPN+ KM+GN IC Q+ W
Sbjct: 314 RTFYHELKDVLNDAKGKHSAPPVSLEGQLLWREFYYLAAFGTPNYHKMEGNPICRQIPWT 373
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
+E+ L AW G+TG+P+IDA M QLR EGW+HHLARHAVACFLTRGDL++ WE G VF
Sbjct: 374 WDEERLAAWEEGRTGFPWIDACMHQLRQEGWLHHLARHAVACFLTRGDLFVHWEAGAKVF 433
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
+ L+DAD A+N GNWMWLS S FF+Q+FRVY PV+FGKK DK
Sbjct: 434 DRDLVDADPALNYGNWMWLSCSCFFYQYFRVYGPVSFGKKYDK 476
>gi|219118654|ref|XP_002180095.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP
1055/1]
gi|217408352|gb|EEC48286.1| cryptochrome photolyase family 1 [Phaeodactylum tricornutum CCAP
1055/1]
Length = 550
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 136/242 (56%), Positives = 171/242 (70%), Gaps = 11/242 (4%)
Query: 41 VPTMKEMG-------LDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPN-S 92
+PT+K++G + S F GGE A++ L K++A +WV FEKP T+PN +
Sbjct: 213 MPTLKDLGYAAAADDMKNSGKGGYAFAGGENAAIELLAKNMARSQWVATFEKPKTSPNDA 272
Query: 93 LEPSTTVLSPYLKFGCLSVRLFYHELKKILA---TGPHAKPPVSLLGQIYWREFYYVVGS 149
PSTT LSPY+K GC+S R FYHEL K+ + + +KPPVSL GQ+ WR+F Y+VG
Sbjct: 273 TRPSTTALSPYVKHGCISPRRFYHELSKVYSKYNSKETSKPPVSLHGQLMWRDFNYLVGY 332
Query: 150 DTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAV 209
TPNFDKM N I Q+ WD + L AW KTGYP+IDAIM QLR GWIHHLARH+V
Sbjct: 333 STPNFDKMIDNPIARQIPWDDDPDLLLAWKMSKTGYPYIDAIMTQLRETGWIHHLARHSV 392
Query: 210 ACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKK 269
ACFLTRGDL+ SWE+G +VFEE L+DADW++N NW WLS +A F+Q+FR YSP+AFGKK
Sbjct: 393 ACFLTRGDLWQSWEDGATVFEEYLIDADWSINNFNWQWLSCTAHFYQYFRCYSPIAFGKK 452
Query: 270 TD 271
TD
Sbjct: 453 TD 454
>gi|343959648|dbj|BAK63681.1| cryptochrome 2 [Pan troglodytes]
Length = 380
Score = 280 bits (716), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 132/215 (61%), Positives = 161/215 (74%), Gaps = 7/215 (3%)
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL-- 118
GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+ L
Sbjct: 18 GGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWD 77
Query: 119 --KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L
Sbjct: 78 LYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALA 134
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLDA
Sbjct: 135 KWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDA 194
Query: 237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
D+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 195 DFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 229
>gi|283806654|ref|NP_001164573.1| chryptochrome 2-2 [Acyrthosiphon pisum]
gi|283476385|emb|CAY26040.1| chryptochrome 2-2 [Acyrthosiphon pisum]
Length = 512
Score = 280 bits (716), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 141/279 (50%), Positives = 185/279 (66%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGIL-------HPDEHLVPTMKEMGLDE-S 52
+TY +LE + P + A S+ +E G H + VPT++E+G E +
Sbjct: 149 LTYHLFQKLLECI---DPPERAVPSIDKEFLGNAFTPIKYDHDEIFGVPTLEELGFKEIN 205
Query: 53 SIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVR 112
+I + GGETEAL RL+ L K ++ F KP P SL S T L+PYLKFGCLS R
Sbjct: 206 NITRHVWVGGETEALIRLQCHLERKAFIASFGKPKMTPQSLVASPTGLAPYLKFGCLSTR 265
Query: 113 LFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
LF+ EL ++ ++PP+SL GQ+ WR+F+Y ++ PNFD+M GN IC Q+ WD N
Sbjct: 266 LFFSELNELYKKIRKSQPPLSLHGQLLWRDFFYCASTNNPNFDRMVGNPICVQIPWDKNP 325
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W++G+TGYP+IDAIM QLR EGWIH +ARHAVACFLTRGDL+LSWEEG VF+EL
Sbjct: 326 RALSKWANGQTGYPWIDAIMIQLRQEGWIHCIARHAVACFLTRGDLWLSWEEGMKVFDEL 385
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDADW++NAG WMW S S+F+ +F Y PV FG+K D
Sbjct: 386 LLDADWSVNAGYWMWYSCSSFYQEFIHCYCPVRFGRKVD 424
>gi|410926431|ref|XP_003976682.1| PREDICTED: cryptochrome-2-like [Takifugu rubripes]
Length = 718
Score = 279 bits (714), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 137/273 (50%), Positives = 181/273 (66%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDE---HLVPTMKEMGLDESSIPLCKF 59
+Q +VS LE LP+ +P +C + + + +P+++E+G +P +
Sbjct: 153 FQTIVSRLE-LPR-RPLPTVTQHQIHKCGAKMADSQEQLYSIPSLEELGFRTEGLPPAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
GGE+EAL+RL K L K WV E + SL S LSPYL+FGCLS R+ Y+ L+
Sbjct: 211 RGGESEALERLHKHLDKKVWVANLEHSRVSTCSLYASPAGLSPYLRFGCLSCRVLYYNLR 270
Query: 120 KI-LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
++ + PP SL GQ+ WREF+Y ++ PNFD+M+GN IC Q+ WD N + L W
Sbjct: 271 ELYVKLRKGCSPPPSLFGQLLWREFFYTAATNNPNFDRMEGNPICVQIPWDQNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G TG+P+IDAIM QLR EGWIHH AR AVACFLTRGDL++SWE G VFEELLLDADW
Sbjct: 331 AEGHTGFPWIDAIMTQLRQEGWIHHQARRAVACFLTRGDLWISWECGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS SAFF QFF+ Y PV FG++TD
Sbjct: 391 SVNAGSWMWLSCSAFFQQFFKCYCPVGFGRRTD 423
>gi|308803621|ref|XP_003079123.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
gi|116057578|emb|CAL53781.1| cryptochrome-like protein 1 (ISS) [Ostreococcus tauri]
Length = 1646
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 147/323 (45%), Positives = 195/323 (60%), Gaps = 55/323 (17%)
Query: 2 TYQKLVSVLESLPKPKPADDAPTSLP-------RECQGILH--PDEHLVPTMKEMGL--- 49
TYQ +++ + P DA +P E + ++ D + +PT++++G
Sbjct: 1245 TYQGFFKIVDKMGAPNAPIDAMEKMPGSFASSDEETKALVQGVADAYGIPTLEDLGYEPL 1304
Query: 50 -DESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS---------------- 92
D+ P GGETE L+RL LA KEW+ +FEKP+T P +
Sbjct: 1305 GDDEGFPGV---GGETEGLRRLRLMLARKEWIGQFEKPSTNPTTRFHGLSQSGKTKPKSP 1361
Query: 93 ---------------------LEPSTTVLSPYLKFGCLSVRLFYHELKKILAT--GPHAK 129
+ PSTT LSPY+KFGC+S R+FYHEL + G H+K
Sbjct: 1362 FEIAAGRSKDGDASTSGAEALMIPSTTALSPYMKFGCVSPRVFYHELTAVYKELEGKHSK 1421
Query: 130 PPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFID 189
PP SL+GQ+ WREFYY+V + T NFDKM+GN IC Q+ W + + AW + +TG+P+ID
Sbjct: 1422 PPTSLMGQLMWREFYYLVAAGTKNFDKMEGNAICRQIPWKKDRELFAAWENAQTGFPWID 1481
Query: 190 AIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLS 249
A M QLR EGW+HHLARHAVACFLTRGDL++ WE G+ F+ L+DADWA+N GNWMWLS
Sbjct: 1482 AAMTQLRREGWLHHLARHAVACFLTRGDLFIHWEWGRDAFDRDLVDADWALNNGNWMWLS 1541
Query: 250 ASAFFHQFFRVYSPVAFGKKTDK 272
SAFF+Q+FRVYSP+AF KK DK
Sbjct: 1542 CSAFFYQYFRVYSPIAFAKKYDK 1564
>gi|223647560|gb|ACN10538.1| Cryptochrome-1 [Salmo salar]
Length = 643
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 141/286 (49%), Positives = 185/286 (64%), Gaps = 22/286 (7%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPT-SLPRECQGIL-------HPDEHLVPTMKEMGLDES 52
+T++ ++++S+P P DAP +L R G H D++ VP ++E+G D
Sbjct: 148 LTFKHFQTLVDSMPPP----DAPVEALSRASMGRCVTPVSDNHRDKYGVPLLEELGFDTE 203
Query: 53 SIPLCKFPGGETEALKRLEKSLA---NKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCL 109
+ +PGGE+EAL R+E+ L + W FE + L PS LSPYL+FGCL
Sbjct: 204 GLAPAVWPGGESEALTRIERQLGPDLSTAWQVNFESTRKTASPLLPSPLGLSPYLRFGCL 263
Query: 110 SVRLFYHEL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQ 165
S RLFY +L KK+ G PP+SL ++ WREF+Y ++ P FDKM GN IC +
Sbjct: 264 SCRLFYSKLAELYKKVKTNG---SPPISLYDKLLWREFFYTAATNNPRFDKMDGNPICIR 320
Query: 166 VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEG 225
+ WD N + L W+ KTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG
Sbjct: 321 IPWDRNAEALAKWAEAKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEG 380
Query: 226 QSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
VFEELLLDADW++NAG+W+ S S+FF QFF Y PV FG+K D
Sbjct: 381 MKVFEELLLDADWSVNAGSWLCHSCSSFFQQFFHCYCPVGFGRKID 426
>gi|51948352|gb|AAU14280.1| cryptochrome-like protein 1 [Ostreococcus tauri]
Length = 559
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 147/323 (45%), Positives = 195/323 (60%), Gaps = 55/323 (17%)
Query: 2 TYQKLVSVLESLPKPKPADDAPTSLP-------RECQGILH--PDEHLVPTMKEMGL--- 49
TYQ +++ + P DA +P E + ++ D + +PT++++G
Sbjct: 158 TYQGFFKIVDKMGAPNAPIDAMEKMPGSFASSDEETKALVQGVADAYGIPTLEDLGYEPL 217
Query: 50 -DESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS---------------- 92
D+ P GGETE L+RL LA KEW+ +FEKP+T P +
Sbjct: 218 GDDEGFPGV---GGETEGLRRLRLMLARKEWIGQFEKPSTNPTTRFHGLSQSGKTKPKSP 274
Query: 93 ---------------------LEPSTTVLSPYLKFGCLSVRLFYHELKKILAT--GPHAK 129
+ PSTT LSPY+KFGC+S R+FYHEL + G H+K
Sbjct: 275 FEIAAGRSKDGDASTSGAEALMIPSTTALSPYMKFGCVSPRVFYHELTAVYKELEGKHSK 334
Query: 130 PPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFID 189
PP SL+GQ+ WREFYY+V + T NFDKM+GN IC Q+ W + + AW + +TG+P+ID
Sbjct: 335 PPTSLMGQLMWREFYYLVAAGTKNFDKMEGNAICRQIPWKKDRELFAAWENAQTGFPWID 394
Query: 190 AIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLS 249
A M QLR EGW+HHLARHAVACFLTRGDL++ WE G+ F+ L+DADWA+N GNWMWLS
Sbjct: 395 AAMTQLRREGWLHHLARHAVACFLTRGDLFIHWEWGRDAFDRDLVDADWALNNGNWMWLS 454
Query: 250 ASAFFHQFFRVYSPVAFGKKTDK 272
SAFF+Q+FRVYSP+AF KK DK
Sbjct: 455 CSAFFYQYFRVYSPIAFAKKYDK 477
>gi|147865945|emb|CAN80978.1| hypothetical protein VITISV_029095 [Vitis vinifera]
Length = 633
Score = 277 bits (708), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 130/219 (59%), Positives = 167/219 (76%), Gaps = 3/219 (1%)
Query: 41 VPTMKEMGLDE-SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTT 98
VPT+KE+G +E L F GGE+EALKRL +S+ +K+WV FEKP P++ L+P+TT
Sbjct: 322 VPTVKELGYEEIGQDELTPFKGGESEALKRLRESIRDKDWVANFEKPKGDPSAFLKPATT 381
Query: 99 VLSPYLKFGCLSVRLFYHELKKILAT-GPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
VLSPYLKFGCLS R FY L + H PPVSL+GQ+ WR+F+Y VG TPNFD+M
Sbjct: 382 VLSPYLKFGCLSSRYFYQCLTDVYKNVKRHTSPPVSLVGQLLWRDFFYTVGFGTPNFDRM 441
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
KGN+IC Q+ W+ +++ L AW +TGYP+IDAIM QLR GW+HHLARH VACFLTRGD
Sbjct: 442 KGNRICKQIPWNDDDELLAAWREARTGYPWIDAIMVQLRKWGWMHHLARHCVACFLTRGD 501
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ 256
L++ WE+G+ VFE LL+D+DWA+N GNW+WLS S+FF+Q
Sbjct: 502 LFVHWEKGRDVFERLLIDSDWAINNGNWLWLSCSSFFYQ 540
>gi|18858467|ref|NP_571867.1| cryptochrome 2b [Danio rerio]
gi|8698590|dbj|BAA96849.1| cryptochrome 2b [Danio rerio]
Length = 638
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 134/278 (48%), Positives = 183/278 (65%), Gaps = 7/278 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAP-TSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ S+ P P +P + +C + H D++ VP ++E+G D +
Sbjct: 148 LTYKRFQTLVSSMEPPDPPLASPDRGMMGKCVTPISENHRDKYGVPLLEELGFDTEGLAP 207
Query: 57 CKFPGGETEALKRLEKSLA--NKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
+PGGE+EALKR+E+ L + W FE+P + L S LSPYL+FGCLS RLF
Sbjct: 208 AVWPGGESEALKRMERHLGPDSTAWQENFERPKMNASPLMASPLGLSPYLRFGCLSCRLF 267
Query: 115 Y-HELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEK 173
Y + L + P +SL +I WREF+Y ++ P FD+M+GN IC ++ WD N +
Sbjct: 268 YCNSLSSTKKVKKNMNPSISLYDKILWREFFYTAATNNPRFDRMEGNPICIRIPWDRNAE 327
Query: 174 YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELL 233
L W+ KTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELL
Sbjct: 328 ALAKWAEAKTGFPWIDAIMMQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELL 387
Query: 234 LDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LDADW++NAG+W+ S S+FF QFF Y PV FG++ D
Sbjct: 388 LDADWSVNAGSWLCHSCSSFFQQFFHCYCPVGFGRRID 425
>gi|283806650|ref|NP_001164572.1| chryptochrome 2-1 [Acyrthosiphon pisum]
gi|283476383|emb|CAY26039.1| chryptochrome 2-1 [Acyrthosiphon pisum]
Length = 512
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 139/279 (49%), Positives = 185/279 (66%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGIL-------HPDEHLVPTMKEMGLDE-S 52
+TY ++LE + P + A S+ +E G H VPT++E+G +E +
Sbjct: 149 LTYHLFQNILECI---DPPERAVPSIDKEFLGNAFTPTKYDHDKIFGVPTVEELGFEEIN 205
Query: 53 SIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVR 112
+I + GGETEAL RL+ L K ++ F KP P SL S T L+PYLKFGCLS R
Sbjct: 206 NIARHVWVGGETEALIRLQCHLERKAFIASFGKPKMTPQSLLASPTGLAPYLKFGCLSTR 265
Query: 113 LFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L++ EL ++ ++PP+SL GQ+ WR+F+Y ++ PNFD+M GN IC Q+ WD N
Sbjct: 266 LYFSELNELYKKIRKSQPPLSLHGQLLWRDFFYCASTNNPNFDRMVGNPICVQIPWDKNP 325
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W++G+TGYP+IDAIM QLR EGWIH +ARHAVACFLT GDL+LSWEEG VF+EL
Sbjct: 326 RALSKWANGQTGYPWIDAIMIQLRQEGWIHCIARHAVACFLTWGDLWLSWEEGMKVFDEL 385
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDADW++NAG WMW S S+F+ +F Y PV FG+K D
Sbjct: 386 LLDADWSVNAGYWMWYSCSSFYKEFIHCYCPVRFGRKVD 424
>gi|297834434|ref|XP_002885099.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata]
gi|297330939|gb|EFH61358.1| 6-4 photolyase [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 131/224 (58%), Positives = 164/224 (73%), Gaps = 4/224 (1%)
Query: 41 VPTMKEMGL--DESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPST 97
VP+++E+G D+ F GGE+EALKRL KS+++K WV FEKP P++ L+P+T
Sbjct: 199 VPSLEELGYRDDDEQADWTPFRGGESEALKRLTKSISDKAWVANFEKPKGDPSAFLKPAT 258
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
TV+SPYLKFGCLS R FY L+ I H PPVSLLGQ+ WREF+Y TPNFDK
Sbjct: 259 TVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLLWREFFYTTAFGTPNFDK 318
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
MKGN+IC Q+ W+ + L AW GKTGYP+IDAIM QL GW+HHLARH VACFLTRG
Sbjct: 319 MKGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRG 378
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRV 260
DL++ WE+G+ VFE LL+D+DWA+N GNWMWLS S+FF+Q +
Sbjct: 379 DLFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQAIKA 422
>gi|79313247|ref|NP_001030703.1| (6-4)DNA photolyase [Arabidopsis thaliana]
gi|332642183|gb|AEE75704.1| (6-4)DNA photolyase [Arabidopsis thaliana]
Length = 445
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 166/229 (72%), Gaps = 6/229 (2%)
Query: 41 VPTMKEMGL-DESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTT 98
VP+++E+G D+ F GGE+EALKRL KS+++K WV FEKP P++ L+P+TT
Sbjct: 218 VPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVANFEKPKGDPSAFLKPATT 277
Query: 99 VLSPYLKFGCLSVRLFYHELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
V+SPYLKFGCLS R FY L+ I H PPVSLLGQ+ WREF+Y TPNFDKM
Sbjct: 278 VMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLLWREFFYTTAFGTPNFDKM 337
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
KGN+IC Q+ W+ + L AW GKTGYP+IDAIM QL GW+HHLARH VACFLTRGD
Sbjct: 338 KGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGD 397
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAF 266
L++ WE+G+ VFE LL+D+DWA+N GNWMWLS S+FF+Q SP F
Sbjct: 398 LFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQ---ALSPFCF 443
>gi|358055721|dbj|GAA98066.1| hypothetical protein E5Q_04748 [Mixia osmundae IAM 14324]
Length = 601
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 151/337 (44%), Positives = 202/337 (59%), Gaps = 64/337 (18%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLP-----------------------------RECQ 31
++Y V +LE LP+P DAP+SLP R+ +
Sbjct: 150 VSYGPFVKILEGLPQPPRPIDAPSSLPNPGPTDLADLKRSEHSVDTWKKNDNNAENRDGE 209
Query: 32 GILH-----PDEHL-VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEK 85
++ PD VPTM+E+G+ +++ PGGETEALKRLE + +KE + FEK
Sbjct: 210 DKIYASFTGPDGKFSVPTMEELGMAKAT---GIHPGGETEALKRLEAYMKDKEAIINFEK 266
Query: 86 PNTAPNSLEPS-TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFY 144
P T P + +P+ TTVLSPYLKFG LSVR FY L+ ++ H +PPVSL+GQ WREF+
Sbjct: 267 PKTNPGAFDPAATTVLSPYLKFGALSVRTFYWRLQDVVKGTKHTQPPVSLIGQCLWREFF 326
Query: 145 YVVGSDTPNFDKMKGNKICCQVDWDTNEKY------------------------LEAWSH 180
+ TPN+ +++GN IC +DW +++Y LEAW+H
Sbjct: 327 HYNMRVTPNWHEIRGNPICKYIDWRLDDRYDDKGEPIPRSEWKLSDEEKEAEKVLEAWTH 386
Query: 181 GKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAM 240
G+TG+P+IDAIMRQL++ GWIHHLARH+VACFLTRG Y+SW G+ VFE L+D D AM
Sbjct: 387 GQTGFPWIDAIMRQLKMHGWIHHLARHSVACFLTRGHAYISWVRGKEVFERWLIDHDPAM 446
Query: 241 NAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLL 277
N GNWMWLSASAF+ Q+FRVY +A+G DK L+
Sbjct: 447 NTGNWMWLSASAFYSQWFRVYG-MAYGSNWDKSGALI 482
>gi|66910245|gb|AAH96780.1| Cry2b protein [Danio rerio]
gi|197247271|gb|AAI64795.1| Cry2b protein [Danio rerio]
Length = 639
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 127/241 (52%), Positives = 167/241 (69%), Gaps = 4/241 (1%)
Query: 35 HPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSL---ANKEWVRKFEKPNTAPN 91
H D++ VP ++E+G D + +PGGE+EALKR+E+ L + W FE+P +
Sbjct: 186 HRDKYGVPLLEELGFDTEGLAPAVWPGGESEALKRMERHLGPDSTVAWQENFERPKMNAS 245
Query: 92 SLEPSTTVLSPYLKFGCLSVRLFYHELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSD 150
L S LSPYL+FGCLS RLFY +L ++ + P +SL +I WREF+Y ++
Sbjct: 246 PLMASPLGLSPYLRFGCLSCRLFYCKLTQLYKKVKKNMNPSISLYDKILWREFFYTAATN 305
Query: 151 TPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVA 210
P FD+M+GN IC ++ WD N + L W+ KTG+P+IDAIM QLR EGWIHHLARHAVA
Sbjct: 306 NPRFDRMEGNPICIRIPWDRNAEALAKWAEAKTGFPWIDAIMMQLRQEGWIHHLARHAVA 365
Query: 211 CFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKT 270
CFLTRGDL++SWEEG VFEELLLDADW++NAG+W+ S S+FF QFF Y PV FG++
Sbjct: 366 CFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWLCHSCSSFFQQFFHCYCPVGFGRRI 425
Query: 271 D 271
D
Sbjct: 426 D 426
>gi|452822749|gb|EME29765.1| deoxyribodipyrimidine photo-lyase [Galdieria sulphuraria]
Length = 545
Score = 270 bits (691), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 131/264 (49%), Positives = 188/264 (71%), Gaps = 6/264 (2%)
Query: 14 PKPKPADDAPTSLPRECQGILHPDEHLVPTMKEM-GLDESSIPL-CKFPGGETEALKRLE 71
P PKP + P + + VP ++E+ G + + P C F GGE++AL+R++
Sbjct: 213 PPPKPIETVRNIPPLRKELLSSISISKVPEIEEIPGYELITEPTPCPFQGGESKALERMQ 272
Query: 72 KSLANKE--WVRKFEKPNTAPNSLEP-STTVLSPYLKFGCLSVRLFYHELKKILAT-GPH 127
++L ++ W+ +F KP+T+P SL+P STTVLSPY+K G LSVRLF+ ELK++ +
Sbjct: 273 QALNREQGKWIVRFSKPHTSPVSLDPPSTTVLSPYIKCGALSVRLFFWELKRVEDSFSVK 332
Query: 128 AKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPF 187
KPPVSL+GQ+YWRE +Y++G P+FD+++GN +C + W+ +++ +AW +TGYPF
Sbjct: 333 TKPPVSLIGQLYWREHFYLLGYTIPHFDQIQGNPLCKTIPWEHRQEWFQAWEQAQTGYPF 392
Query: 188 IDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMW 247
IDA M QL+ GW+HHL RH VACFLTRGDL++SWE+G+ FE+ L+D DW++NA NWMW
Sbjct: 393 IDAAMTQLKQWGWLHHLTRHVVACFLTRGDLWISWEKGKETFEKYLIDGDWSINAANWMW 452
Query: 248 LSASAFFHQFFRVYSPVAFGKKTD 271
LS SAFF ++FRVYSP+AF KK D
Sbjct: 453 LSCSAFFTRYFRVYSPIAFPKKYD 476
>gi|255084421|ref|XP_002508785.1| predicted protein [Micromonas sp. RCC299]
gi|226524062|gb|ACO70043.1| predicted protein [Micromonas sp. RCC299]
Length = 566
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 135/277 (48%), Positives = 173/277 (62%), Gaps = 46/277 (16%)
Query: 41 VPTMKEMGLDESSIPLCKFP--GGETEALKRLEKSLANKEWVRKFEKPNTAPNSL----- 93
+P+++ +G + FP GGETE L RL K LA ++ +F+KP T P L
Sbjct: 203 IPSLERLGYEPIKAGE-GFPARGGETEGLARLRKMLARTTYIAEFKKPQTNPTELWTPVL 261
Query: 94 -----------------------------------EPSTTVLSPYLKFGCLSVRLFYHEL 118
P+TT LSPYLKFGC+S R F+HEL
Sbjct: 262 GKEGKVKGAPPANPFEAAKKSSKEPKSTQLAEAFMAPATTALSPYLKFGCVSPRTFWHEL 321
Query: 119 KKILAT---GPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
+ +L G H+KPP SL GQ+ WREFYY+ G TPN+D+M GN+IC Q+ W +E+ L
Sbjct: 322 RAVLDVELGGKHSKPPESLEGQLLWREFYYLAGYGTPNYDRMAGNRICRQIPWTWDEERL 381
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
AW +TG+P+IDA M QL+ EGW+HHLARHAVACFLTRGDL++ WE G +VF+ L+D
Sbjct: 382 AAWEESRTGFPWIDACMMQLKQEGWMHHLARHAVACFLTRGDLFVHWEAGAAVFDRELVD 441
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
ADWA+N GNWMWLS S FF+Q+FRVY PV+FGKK DK
Sbjct: 442 ADWALNNGNWMWLSCSCFFYQYFRVYGPVSFGKKYDK 478
>gi|379326851|gb|AFD01671.1| cryptochrome 1, partial [Parus major]
Length = 281
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 122/196 (62%), Positives = 148/196 (75%), Gaps = 1/196 (0%)
Query: 77 KEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILA-TGPHAKPPVSLL 135
K WV FE+P NSL S T LSPYL+FGCLS RLFY +L + ++ PP+SL
Sbjct: 1 KAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLTDLYKKVKENSSPPLSLY 60
Query: 136 GQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQL 195
GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W+ G+TG+P+IDAIM QL
Sbjct: 61 GQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQL 120
Query: 196 RLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH 255
R EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW++NAG+WMWLS S+FF
Sbjct: 121 RQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQ 180
Query: 256 QFFRVYSPVAFGKKTD 271
QFF Y PV FG++TD
Sbjct: 181 QFFHCYCPVGFGRRTD 196
>gi|156353900|ref|XP_001623146.1| predicted protein [Nematostella vectensis]
gi|156209813|gb|EDO31046.1| predicted protein [Nematostella vectensis]
Length = 541
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 135/278 (48%), Positives = 179/278 (64%), Gaps = 7/278 (2%)
Query: 1 MTYQKLVSVLESLPKPKP----ADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPL 56
+TY+K +SV+E + P P D + L H + + VPTM+E+GL+ S + +
Sbjct: 166 LTYKKFLSVIEGIAPPDPPVPHIDPSAQELGHTPLSDNHDELYGVPTMEELGLETSKLFV 225
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEALKRL++ L K W+ F KP +SL S + +SPYL+FGCLS RLFY+
Sbjct: 226 EVWHGGETEALKRLDRHLERKAWIASFGKPKVTSDSLMASPSGVSPYLRFGCLSPRLFYY 285
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKY-- 174
L + PP SL GQ+ WREF++VV ++ PNFDKM+ N IC + W T+++
Sbjct: 286 RLMDLYRKVKGGPPPTSLYGQLLWREFFFVVSTNNPNFDKMESNPICLYIKWRTDKQVAS 345
Query: 175 -LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELL 233
L+ W+ +TG+P+IDAIM QL+ EGWIH+LAR A+A FLTRG L++SWE G VF E L
Sbjct: 346 DLQKWTDAQTGFPWIDAIMSQLKQEGWIHYLARVAIASFLTRGCLWISWEAGMKVFAEHL 405
Query: 234 LDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LDADW+ NAGNWMW S SAF QFF PV F K D
Sbjct: 406 LDADWSSNAGNWMWWSYSAFSQQFFNPPCPVEFSKSLD 443
>gi|341616316|gb|AEK86195.1| CRY1A, partial [Halichoeres trimaculatus]
Length = 309
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 137/276 (49%), Positives = 182/276 (65%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESL-PKPKPADDAPTSLPRECQGILHPD---EHLVPTMKEMGLDESSIPL 56
+TY++ +++ + P PA+ + C + PD + VPT++E+G + +
Sbjct: 8 VTYKRFQALISQMDPVEPPAETVTLDIINSCATPISPDHDDKFGVPTLEELGFETEGLSP 67
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEALKRLE+ L K W E+P PNSL S T LS YL+FGCLS RL Y
Sbjct: 68 AVWPGGETEALKRLEQHLEKKAWGAHCERPRMNPNSLLASPTELSAYLRFGCLSCRLLYF 127
Query: 117 ELKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
+L + + P S GQ+ REF++ ++ P FDKM+GN +C Q+ W+ N + L
Sbjct: 128 KLTDLYHKVKQNNAVPYSPYGQLLCREFFFTTATNNPCFDKMEGNPVCVQIPWERNPEAL 187
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ G+TG+P+IDAIM QLR EGWIHHLAR AVACFLTRGDL++SWEEG VFEELL+D
Sbjct: 188 AKWAEGRTGFPWIDAIMTQLRQEGWIHHLARRAVACFLTRGDLWISWEEGVKVFEELLID 247
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW+ NAG+WMWLS SAFF QFF+ PV FG++TD
Sbjct: 248 ADWSGNAGSWMWLSCSAFFQQFFQCCCPVGFGRRTD 283
>gi|156361145|ref|XP_001625380.1| predicted protein [Nematostella vectensis]
gi|156212211|gb|EDO33280.1| predicted protein [Nematostella vectensis]
Length = 463
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 134/275 (48%), Positives = 177/275 (64%), Gaps = 7/275 (2%)
Query: 1 MTYQKLVSVLESLPKPKP----ADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPL 56
+TY+K +SV+E + P P D + L H + + VPTM+E+GL+ S + +
Sbjct: 166 LTYKKFLSVIEGIAPPDPPVPHIDPSAQKLGHTPLSDNHDELYGVPTMEELGLETSKLFV 225
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEALKRL++ L K W+ F KP +SL S + +SPYL+FGCLS RLFY+
Sbjct: 226 EVWHGGETEALKRLDRHLERKAWIASFGKPKVTSDSLMASPSGVSPYLRFGCLSPRLFYY 285
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKY-- 174
L + PP SL GQ+ WREF++VV ++ PNFDKM+ N IC + W T+++
Sbjct: 286 RLMDLYRKVKGGPPPTSLYGQLLWREFFFVVSTNNPNFDKMESNPICLYIKWRTDKQVAS 345
Query: 175 -LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELL 233
L+ W+ +TG+P+IDAIM QL+ EGWIH+LAR AVA FLTRG L++SWE G VF E L
Sbjct: 346 DLQKWTDAQTGFPWIDAIMSQLKQEGWIHYLARVAVASFLTRGCLWISWEAGMKVFAEHL 405
Query: 234 LDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGK 268
LDADW+ NAGNWMW S SAF QFF PV F
Sbjct: 406 LDADWSSNAGNWMWWSYSAFSQQFFNPPCPVEFSN 440
>gi|449018268|dbj|BAM81670.1| 6-4 photolyase [Cyanidioschyzon merolae strain 10D]
Length = 519
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 138/280 (49%), Positives = 185/280 (66%), Gaps = 16/280 (5%)
Query: 1 MTYQKLVS-VLESLPKPKPADDAPTSLPRECQGILHPDEHL----VPTMKEMGLDESSIP 55
+TY+ + V E L +P A DAP G PD L VP++ E+ +
Sbjct: 156 LTYKSFYAFVTERLGQPMSALDAPAP----ASGFQTPDVDLDTYTVPSLSELEAYQGLEV 211
Query: 56 LCKFPGGETEALKRLEKSLANK-EWVRKFEKPNTAPNSLE-PSTTVLSPYLKFGCLSVRL 113
F GGETEAL+R+E L + + VR F KP T+P + STT LSPY KFGCLS RL
Sbjct: 212 ETPFRGGETEALRRMENFLRERADEVRSFAKPATSPTAWPVASTTQLSPYFKFGCLSPRL 271
Query: 114 FYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWD--TN 171
F ++++ + P +PPVSL+GQI+WREF+ V TP+F +M+GN IC Q+ W +
Sbjct: 272 F---VERVRSLRPLQQPPVSLIGQIWWREFFTYVAYVTPHFHQMQGNPICRQIPWREAAD 328
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ AW +TGYP+IDA M QLR EGW+HHLARHAVACFLTRGDL++SWE G+ F+
Sbjct: 329 DARYRAWEEARTGYPWIDACMVQLRQEGWLHHLARHAVACFLTRGDLWVSWERGRETFDR 388
Query: 232 LLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LL+DAD+++N NW+WLS+SAFFHQ++RVYSP++F +K D
Sbjct: 389 LLVDADYSLNNANWLWLSSSAFFHQYYRVYSPISFPQKYD 428
>gi|403177785|ref|XP_003336224.2| hypothetical protein PGTG_17805 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375173202|gb|EFP91805.2| hypothetical protein PGTG_17805 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 731
Score = 257 bits (657), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 146/341 (42%), Positives = 191/341 (56%), Gaps = 74/341 (21%)
Query: 2 TYQKLVSVLESLPKPKPADDAPTSLPRECQGILH---PDEHL------------------ 40
+Y+ +S +E L P PA DAP SLP L P E L
Sbjct: 248 SYRGFLSAIEKLGPPSPAHDAPGSLPNPGSTTLDDPLPPEFLEKWKKAWTDRLATEKDVN 307
Query: 41 -------------------------VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLA 75
+PTM+E+G+ ++ GGET AL++LE+ L
Sbjct: 308 KKNRVAEDKAYQSPHPLSGPTGQFEIPTMEELGIQPAT---SHHRGGETVALQKLEEYLK 364
Query: 76 NKEWVRKFEKPNTAPNSLEP-STTVLSPYLKFGCLSVRLFYHELKKILATGPHAK---PP 131
+KE V KFEKP T+P P STT LS + KFG LS RLFY LK++ P K PP
Sbjct: 365 DKEKVLKFEKPKTSPAEFNPASTTTLSAHFKFGTLSSRLFYARLKQLEKENPKIKASSPP 424
Query: 132 VSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN-------------------- 171
SL+GQ+ WR+F+++ S N+ +++GN++C DW
Sbjct: 425 ESLIGQLLWRDFFHLQQSQIENYHQIEGNRVCRYFDWRLKDRIRRKDVEADGPEDNQDPE 484
Query: 172 -EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFE 230
+K L AW G TG+P+IDAIMRQL+ EGWIHHLARH+VACFLTRG LY+SWE G VF+
Sbjct: 485 AQKNLRAWIDGMTGFPWIDAIMRQLKTEGWIHHLARHSVACFLTRGHLYISWERGAEVFD 544
Query: 231 ELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+LL+D D ++N+GNWMWLSASA+F Q+FRVYSP+ FGKK D
Sbjct: 545 DLLIDWDPSLNSGNWMWLSASAYFQQYFRVYSPIQFGKKFD 585
>gi|412988942|emb|CCO15533.1| predicted protein [Bathycoccus prasinos]
Length = 574
Score = 257 bits (656), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 134/271 (49%), Positives = 174/271 (64%), Gaps = 39/271 (14%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANK----EWVRKFEKPNTAP------ 90
+PT++++G S+ GGETE L+R+ +L ++V++F+KP ++P
Sbjct: 219 IPTLEDLGYKAKSLSFKGGKGGETEGLRRMRGALCRGGDGYKYVQEFDKPQSSPCQLFAK 278
Query: 91 --------NSLE------------------PSTTVLSPYLKFGCLSVRLFYHELKKILAT 124
N E PSTT LSP+LKFG +SVR FY EL+ IL
Sbjct: 279 EKGSGKALNPFEMAKKASSSSSPKEESLLWPSTTALSPHLKFGTVSVRQFYFELQDILKN 338
Query: 125 ---GPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
G H PP SL+GQI WREFYYV TPN+DKM GN+IC Q+ W + + L W +
Sbjct: 339 ELKGKHTNPPTSLMGQILWREFYYVNACGTPNYDKMVGNRICKQIKWKHDPENLAKWENA 398
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
+TG+P+IDA M QL+ EGW+HHLARHAVACFLTRGDL++SWEEG VF+ L+DADWA+N
Sbjct: 399 QTGFPWIDAAMTQLKEEGWMHHLARHAVACFLTRGDLFISWEEGARVFDRDLVDADWALN 458
Query: 242 AGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
GNWMWLSAS+FF+Q+FRVY P +F KK DK
Sbjct: 459 NGNWMWLSASSFFYQYFRVYGPHSFAKKYDK 489
>gi|348681082|gb|EGZ20898.1| DNA photolyase [Phytophthora sojae]
Length = 516
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 129/230 (56%), Positives = 163/230 (70%), Gaps = 19/230 (8%)
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPS--TTVLSPYLKFGCLSVRLFYHEL 118
GGE +AL L++ A++E V KFEKPNT+P PS TT+LSP+L +GCLS R FYH+L
Sbjct: 191 GGEKKALSALKEYFADEERVAKFEKPNTSPAQTPPSPATTILSPHLFYGCLSPRTFYHQL 250
Query: 119 KKILATGPH-AKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWD-------- 169
+ IL + +KPPVSL GQ+ WREFY+ G P FDKM+ + C QVDW
Sbjct: 251 RDILQRHKNPSKPPVSLEGQLLWREFYHCHGHANPYFDKMEESPTCLQVDWRWHTIPEKE 310
Query: 170 ---TNEKYL-----EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLS 221
T++ L EAW G+TG+P+IDAIM QL+ EGW+HHLARH+VACFLTRGDLY+S
Sbjct: 311 EDMTDDDKLARSQFEAWKEGRTGFPWIDAIMIQLKEEGWMHHLARHSVACFLTRGDLYIS 370
Query: 222 WEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
W G VF+E L+D DW++NAGNW+WLS+S FF +FRVYSP+AFGKK D
Sbjct: 371 WVRGLEVFQERLIDHDWSLNAGNWLWLSSSYFFTAYFRVYSPIAFGKKWD 420
>gi|298162590|gb|ADI59662.1| cryptochrome [Amphiprion melanopus]
Length = 308
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 125/242 (51%), Positives = 164/242 (67%), Gaps = 6/242 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S ++++ P A+ + +C L H D+ VP+++E+G D + +
Sbjct: 69 FQTLISRMDAVEVP--AESITAEIMGKCTTPLSEDHDDKFGVPSLEELGFDTEGLSSAVW 126
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPY +FGCLS RLFY +L
Sbjct: 127 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYPRFGCLSCRLFYFKLT 186
Query: 120 KIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+ N IC Q+ WD N + L W
Sbjct: 187 DLYRKVKKNSSPPLSLYGQLLWREFFYTAATNNPCFDKMESNPICVQIPWDRNPEALAKW 246
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 247 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 306
Query: 239 AM 240
++
Sbjct: 307 SV 308
>gi|380254427|dbj|BAL72538.1| cryptochrome1 [Siganus guttatus]
Length = 581
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 125/276 (45%), Positives = 174/276 (63%), Gaps = 12/276 (4%)
Query: 3 YQKLVSVLESLPKP------KPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPL 56
+Q ++S ++++ P + D T + + H D+ VP+++E+G + +
Sbjct: 153 FQDIISQMDAVEHPAETVTQRDLDKCTTPISKN-----HSDKFGVPSLEELGFETEGLSA 207
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+PGGETEAL RLE+ L +E V + SL + TVL PYL+FGCLS RLFY
Sbjct: 208 AVWPGGETEALMRLEQHLEWRESVLNHGCSHIDARSLLANPTVLCPYLRFGCLSCRLFYF 267
Query: 117 ELKKI-LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L ++ + PP Q+ W EF Y V ++ P FDKM+GN +C Q+ WD N + L
Sbjct: 268 RLTELHKKIKQNNIPPPYFYDQLLWSEFLYTVSTNNPCFDKMEGNPVCIQIPWDRNPEAL 327
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ G+TG+P+IDAIM QL+ EGWIH LA+++VACFLTRGDL++SWEEG FEELL+D
Sbjct: 328 AKWAEGRTGFPWIDAIMTQLKQEGWIHSLAKYSVACFLTRGDLWISWEEGMKAFEELLID 387
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
ADW+MNAG+WMW S S+FF QFF PV G++ D
Sbjct: 388 ADWSMNAGSWMWFSCSSFFRQFFHCRCPVESGRRKD 423
>gi|194380702|dbj|BAG58504.1| unnamed protein product [Homo sapiens]
Length = 336
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 116/185 (62%), Positives = 142/185 (76%), Gaps = 7/185 (3%)
Query: 91 NSLEPSTTVLSPYLKFGCLSVRLFYHEL----KKILATGPHAKPPVSLLGQIYWREFYYV 146
NSL S T LSPYL+FGCLS RLFY+ L KK+ ++ PP+SL GQ+ WREF+Y
Sbjct: 4 NSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKR---NSTPPLSLFGQLLWREFFYT 60
Query: 147 VGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLAR 206
++ P FD+M+GN IC Q+ WD N + L W+ GKTG+P+IDAIM QLR EGWIHHLAR
Sbjct: 61 AATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLAR 120
Query: 207 HAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAF 266
HAVACFLTRGDL++SWE G VF+ELLLDAD+++NAG+WMWLS SAFF QFF Y PV F
Sbjct: 121 HAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGF 180
Query: 267 GKKTD 271
G++TD
Sbjct: 181 GRRTD 185
>gi|325180456|emb|CCA14862.1| cryptochrome putative [Albugo laibachii Nc14]
Length = 639
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/256 (51%), Positives = 162/256 (63%), Gaps = 28/256 (10%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPS--TT 98
VP + E G ++ + GGE ALK L+ N+ V KFEKP T+P PS TT
Sbjct: 289 VPELSEFGFEKPGRHSFIY-GGENIALKILQTYCKNEGQVVKFEKPKTSPAETCPSKSTT 347
Query: 99 VLSPYLKFGCLSVRLFYHELKKILATGPHAK----PPVSLLGQIYWREFYYVVGSDTPNF 154
LSPYL FGC+S R FYH ++ I HAK PPVSL GQ+ WREF++ G P F
Sbjct: 348 SLSPYLYFGCMSTRTFYHRVRDI--QNRHAKASSAPPVSLDGQLLWREFFHCNGHANPQF 405
Query: 155 DKMKGNKICCQVDW------DTNEK-------------YLEAWSHGKTGYPFIDAIMRQL 195
DKM+GN +C +DW T E+ EAW G+TGYP+IDAIM QL
Sbjct: 406 DKMEGNPLCLYIDWRWHTLPSTKEEEDALPEDEKLAKAQFEAWKEGQTGYPWIDAIMIQL 465
Query: 196 RLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH 255
+ EGW+HHLARH+VACFLTRGDLY+SW G VF+E L+D DW++N GNW+WLSASAFF
Sbjct: 466 KEEGWMHHLARHSVACFLTRGDLYISWVRGLEVFQERLIDHDWSINCGNWLWLSASAFFT 525
Query: 256 QFFRVYSPVAFGKKTD 271
+FRVYSP FGKK D
Sbjct: 526 AYFRVYSPSTFGKKWD 541
>gi|432094365|gb|ELK25942.1| Cryptochrome-1 [Myotis davidii]
Length = 535
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 126/273 (46%), Positives = 166/273 (60%), Gaps = 34/273 (12%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACF+TRGDL++SWEEG
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFVTRGDLWISWEEG------------- 377
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
QFF Y PV FG++TD
Sbjct: 378 ---------------MKQFFHCYCPVGFGRRTD 395
>gi|431905253|gb|ELK10298.1| Cryptochrome-1 [Pteropus alecto]
Length = 513
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 128/272 (47%), Positives = 164/272 (60%), Gaps = 46/272 (16%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
+ ++ WD N + L W+
Sbjct: 271 DLYK-----------------------------------------KIPWDKNPEALAKWA 289
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW+
Sbjct: 290 EGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWS 349
Query: 240 MNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 350 INAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 381
>gi|170059953|ref|XP_001865587.1| cryptochrome-1 [Culex quinquefasciatus]
gi|167878532|gb|EDS41915.1| cryptochrome-1 [Culex quinquefasciatus]
Length = 789
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 127/270 (47%), Positives = 164/270 (60%), Gaps = 45/270 (16%)
Query: 3 YQKLVSVLESLPKPKPADD-APTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPG 61
+Q +++ +++ P+P+PA A Q H D++ VPT++E+G + + + G
Sbjct: 200 FQAIIASMDAPPQPEPAITLAAIGRAVTPQCDDHDDKYGVPTLEELGFETEGLKPPIWVG 259
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GETEAL RLE+ L K W ++KK
Sbjct: 260 GETEALARLERHLERKAW-------------------------------------KIKK- 281
Query: 122 LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
A PP+SL GQ++WREF+Y + PNFDKM GN IC Q+ WD N + L W+ G
Sbjct: 282 ------AYPPLSLHGQLFWREFFYCAATKNPNFDKMAGNPICVQIPWDRNAEALAKWASG 335
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW++N
Sbjct: 336 QTGFPWIDAIMTQLREEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVN 395
Query: 242 AGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AG WMWLS S+FF QFF Y PV FG+K D
Sbjct: 396 AGMWMWLSCSSFFQQFFHCYCPVKFGRKAD 425
>gi|301121222|ref|XP_002908338.1| cryptochrome, putative [Phytophthora infestans T30-4]
gi|262103369|gb|EEY61421.1| cryptochrome, putative [Phytophthora infestans T30-4]
Length = 568
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 122/236 (51%), Positives = 162/236 (68%), Gaps = 19/236 (8%)
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSL--EPSTTVLSPYLKFGCLSVRLFYHEL 118
GGE +AL+ L+ ++++ V FEKP T+P + PSTTVLSPY+ +GCLS R FYH++
Sbjct: 245 GGEQKALEMLKNYCSDQDRVALFEKPKTSPAQIPPTPSTTVLSPYMFYGCLSPRTFYHQV 304
Query: 119 KKILATGPHAK-PPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWD-----TNE 172
+ I PPVSL+GQ+ WR+FY+ G P FDKM+ + C QV+W NE
Sbjct: 305 RSIQRGRKKVSVPPVSLIGQLLWRDFYHCHGRANPYFDKMEESSTCLQVNWRYHTIPENE 364
Query: 173 KYL-----------EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLS 221
+ L EAW G+TG+P+IDAIM QL+ EGW+HHLARH+VACFLTRGDLY+S
Sbjct: 365 EDLSDDDKLARSQFEAWRDGRTGFPWIDAIMIQLKEEGWMHHLARHSVACFLTRGDLYIS 424
Query: 222 WEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLL 277
W G VF+E L+D DW++NAGNW+WLS+S FF +FRVYSP++FGKK+D L +
Sbjct: 425 WVRGLEVFQERLIDHDWSLNAGNWLWLSSSYFFTAYFRVYSPISFGKKSDPEGLFI 480
>gi|440907719|gb|ELR57829.1| Cryptochrome-1 [Bos grunniens mutus]
Length = 589
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/233 (51%), Positives = 158/233 (67%), Gaps = 8/233 (3%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEG--QSVF 229
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG QS+F
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKQSLF 383
>gi|260829106|ref|XP_002609503.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae]
gi|229294860|gb|EEN65513.1| hypothetical protein BRAFLDRAFT_230208 [Branchiostoma floridae]
Length = 522
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 135/289 (46%), Positives = 180/289 (62%), Gaps = 25/289 (8%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPT-------SLPRECQGILHPDEHLVPTMKEMGLDESS 53
+TY++ VL+ P A + T S+P E L + + + T++E+G+
Sbjct: 154 LTYRQFQKVLKDFGAPPQASETATAEHFASCSVPLEA---LRDERYNMVTLEELGM-RCE 209
Query: 54 IPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRL 113
P KF GGETE L+R+EK L N+ WV +FEKP TAP SL PSTT LSPY FGCLSVR
Sbjct: 210 HP-SKFVGGETEGLRRVEKHLQNQGWVTQFEKPKTAPTSLLPSTTGLSPYFSFGCLSVRH 268
Query: 114 FYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD-KMKGNKICCQVDWDTNE 172
FYH L KI A + S ++ V+ + + ++ I +W +
Sbjct: 269 FYHRLDKIYAKLRSHQTSASSKSRVMIERTRCVLLLEMLSRTCRLIARLIFLLCNW--HN 326
Query: 173 KYLEAW----------SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSW 222
++L+ S +TG+P+IDAIM QL+ EGW+HHLARHAVACFLTRGDL++SW
Sbjct: 327 RFLQLTISDFVACFLSSVAETGFPWIDAIMSQLQKEGWVHHLARHAVACFLTRGDLWISW 386
Query: 223 EEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
EEGQ VFEELLLDAD+++NAGNWMWLS SAF+HQ+ R++ PV FGK+TD
Sbjct: 387 EEGQKVFEELLLDADYSVNAGNWMWLSGSAFYHQYTRIFCPVRFGKRTD 435
>gi|389748358|gb|EIM89535.1| DNA photolyase [Stereum hirsutum FP-91666 SS1]
Length = 629
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 133/308 (43%), Positives = 179/308 (58%), Gaps = 41/308 (13%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILH----------PDEHLVPTMKEMGLD 50
MT L+ + L P PTSLP L DE +PT+ E+G+
Sbjct: 152 MTLNALMKITAKLATPASPLPTPTSLPNPGNFTLSVANEQPPGSLSDEFSIPTLAELGIP 211
Query: 51 ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPS-TTVLSPYLKFGCL 109
S++ GGE+ ALK L+ L++K ++ FEKP TAP + EP+ TT+LSP+L FG L
Sbjct: 212 ASAV-TTPHRGGESLALKNLQTLLSDKTYIATFEKPKTAPTAFEPAATTILSPHLHFGSL 270
Query: 110 SVRLFYHELKKILATGPHAK----PPVSLLGQIYWREFY----YVVGSDTPNFDKMKGNK 161
SVR F+ E+++I+A ++ PP +L GQ+Y+RE Y Y +G F ++ GN
Sbjct: 271 SVRKFHFEVQRIIAEYSESRKASTPPANLPGQLYFREMYFCAQYAIGHP---FSQIAGNS 327
Query: 162 ICCQVDWDT------------------NEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHH 203
+ + W ++ W+ G TG+PF+DA+MRQLR EGWIHH
Sbjct: 328 VARYIPWHLPSTIPYSPTTPYTIDSPLAHRWFFRWAWGITGFPFVDALMRQLRQEGWIHH 387
Query: 204 LARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSP 263
L RH VACFLTRG Y+SWE G +FEELL+D + A NAGNWMWLS +AFF Q++R YSP
Sbjct: 388 LGRHMVACFLTRGGAYISWERGAEIFEELLIDHEPASNAGNWMWLSCTAFFSQYYRCYSP 447
Query: 264 VAFGKKTD 271
VAFGKK D
Sbjct: 448 VAFGKKWD 455
>gi|392587897|gb|EIW77230.1| hypothetical protein CONPUDRAFT_129501 [Coniophora puteana
RWD-64-598 SS2]
Length = 658
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/274 (45%), Positives = 167/274 (60%), Gaps = 36/274 (13%)
Query: 37 DEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP- 95
+E +P+M E+GL ++ + GGETEAL+RL+ +K V F KP T+P +P
Sbjct: 224 NEFAIPSMDELGLPPATTSIY---GGETEALRRLDAYCRDKVRVATFAKPKTSPAEFDPP 280
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKIL-----------ATGPHAKPPVSLLGQIYWREFY 144
+TT+LSPYLKFGCLS R F ++ + + P +KPP +L GQ+ +RE Y
Sbjct: 281 ATTLLSPYLKFGCLSSREFLWRVRDAVDEYVKSNGDAKKSKPASKPPENLEGQLLFREMY 340
Query: 145 YVVG-SDTPNFDKMKGNKICCQVDWD--------------------TNEKYLEAWSHGKT 183
Y + NF +++GN IC +DW +E+ ++W GKT
Sbjct: 341 YAAECAQGINFGQVRGNSICRFIDWKLPNQYAADGSKLVPRPRGNAVDEERFQSWKEGKT 400
Query: 184 GYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAG 243
G+P+IDAIMRQLRLEGWIHHLARH+VACFLTRG Y+SWE G VF+ELL+D D NAG
Sbjct: 401 GFPWIDAIMRQLRLEGWIHHLARHSVACFLTRGQCYISWERGAEVFDELLIDWDPCSNAG 460
Query: 244 NWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLL 277
NWMWLS SAFF ++RVY +F +K DK L+
Sbjct: 461 NWMWLSCSAFFSSYYRVYGVKSFPEKFDKTGKLV 494
>gi|392574712|gb|EIW67847.1| hypothetical protein TREMEDRAFT_21150, partial [Tremella
mesenterica DSM 1558]
Length = 548
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/259 (45%), Positives = 164/259 (63%), Gaps = 25/259 (9%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
VPT+ +MG S+ + GG T+A RL L++ + V F KP+TAP +LEPSTT+L
Sbjct: 220 VPTLSQMGYPPSTTSI---RGGTTQAHLRLNTFLSHPQAVATFSKPHTAPTALEPSTTLL 276
Query: 101 SPYLKFGCLSVRLFYHELKKILAT--GPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMK 158
SPYLKFGC+ VR + K+++ G K P ++ GQ+ +R+ Y + P+F++++
Sbjct: 277 SPYLKFGCVGVREIWWGCKRVVEAYKGEKTKEPENMFGQLEFRDMYACAEALQPHFERIR 336
Query: 159 GNKICCQVDW--------------------DTNEKYLEAWSHGKTGYPFIDAIMRQLRLE 198
GN +C +DW + +E+ EAW G TG+P+IDA MRQL+ E
Sbjct: 337 GNSVCRYIDWGLQNQYDEQGREILPRPRGKEEDERRFEAWREGCTGFPWIDACMRQLKSE 396
Query: 199 GWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFF 258
GWIHHLARH+VACFLTRG Y+SWE G VF+E L+D D A N GNWMWLS SAFF Q++
Sbjct: 397 GWIHHLARHSVACFLTRGQCYISWERGMEVFDEWLIDWDPASNPGNWMWLSCSAFFSQYY 456
Query: 259 RVYSPVAFGKKTDKFELLL 277
RVY V++ +KTDK L+
Sbjct: 457 RVYGLVSWPQKTDKTGALV 475
>gi|169617021|ref|XP_001801925.1| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15]
gi|160703316|gb|EAT80731.2| hypothetical protein SNOG_11687 [Phaeosphaeria nodorum SN15]
Length = 1229
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 124/257 (48%), Positives = 161/257 (62%), Gaps = 28/257 (10%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTV 99
VPTM+E+GL E++ + GGET ALK L++++AN E+ FEKP TAP + P STT+
Sbjct: 789 VPTMQELGLKEATT---QHRGGETLALKTLDETIANSEYTATFEKPKTAPTAFSPQSTTL 845
Query: 100 LSPYLKFGCLSVRLFYHELKKILAT--GPHAKPPVSLLGQIYWREFYYVVGSDTP-NFDK 156
LSP+L FG LSVR FY ++ I+ + G ++PP SL GQ+ +R+ Y+ + +F +
Sbjct: 846 LSPHLHFGSLSVREFYWRVQDIVTSFKGKASQPPASLTGQLLFRDMYFGAQAALGYSFGQ 905
Query: 157 MKGNKIC--------CQVDWDTN-------------EKYLEAWSHGKTGYPFIDAIMRQL 195
N C +D TN E + + W HG+TG+P+IDA+MRQL
Sbjct: 906 TYNNPACRFIPWHLPSAIDPATNLITGKYLVDSALAESHFQRWKHGRTGFPWIDALMRQL 965
Query: 196 RLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH 255
EGWIHHL RHAVACFLTRG Y+ WE G VFEE L+D + A N GNW WLS +AFF
Sbjct: 966 AREGWIHHLGRHAVACFLTRGGCYIDWERGAEVFEEFLIDHESACNIGNWQWLSCTAFFA 1025
Query: 256 QFFRVYSPVAFGKKTDK 272
QFFR YSPVAF K DK
Sbjct: 1026 QFFRCYSPVAFPAKWDK 1042
>gi|348680511|gb|EGZ20327.1| hypothetical protein PHYSODRAFT_492233 [Phytophthora sojae]
Length = 650
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 123/239 (51%), Positives = 152/239 (63%), Gaps = 24/239 (10%)
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPS--TTVLSPYLKFGCLSVRLFYHEL 118
GGE AL L N+ V KFEKP T+P PS TT LSPYL FGC+S R F H +
Sbjct: 317 GGEQIALSILRDYCRNEGRVVKFEKPKTSPAQTTPSASTTSLSPYLYFGCISPRTFLHHV 376
Query: 119 KKILATGPHAKP----PVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWD----- 169
+ I HAK PVSL GQ+ WREF++ G P FDKM+ + C Q+DW
Sbjct: 377 QSIQEH--HAKALSATPVSLDGQLLWREFFHCHGRANPYFDKMEESPTCLQIDWRWHTIP 434
Query: 170 ------TNEKYL-----EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
T++ L EAW G+TG+P+IDAIM QL+ EGW+HHLARH+VACFLTRGDL
Sbjct: 435 EKEEDLTDDDKLARSQFEAWKDGRTGFPWIDAIMIQLKEEGWMHHLARHSVACFLTRGDL 494
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLL 277
Y+SW G +F+E L+D DW++NAGNW+WLS+S FF +FRVYSP FGKK D L +
Sbjct: 495 YISWVRGLEIFQERLIDHDWSINAGNWLWLSSSYFFSAYFRVYSPSTFGKKWDPEGLFI 553
>gi|76880306|dbj|BAE45919.1| cryptochrome [Hyla japonica]
Length = 377
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 149/223 (66%), Gaps = 6/223 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + +C + H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISKME--PLEIPVETITAEVMGKCTTPVSDDHDEKYGVPSLEELGFDTEGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL STT LSPYL+FGCLS LFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASTTGLSPYLRFGCLSCCLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKMVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDRNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLS 221
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++S
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWIS 373
>gi|413936068|gb|AFW70619.1| hypothetical protein ZEAMMB73_082662 [Zea mays]
Length = 397
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 124/222 (55%), Positives = 154/222 (69%), Gaps = 8/222 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHL-VPTMKEMGL-DESSIPLCK 58
+TYQ VS+ P PA + + LP G E L VPT++E+G D S +
Sbjct: 169 LTYQSFVSIAGE--PPAPAMEEYSELPP--LGDTGEYELLPVPTVEELGYGDISQEEIPP 224
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTTVLSPYLKFGCLSVRLFYHE 117
F GGETEAL+R+++SL NKEWV KFEKP P++ ++PSTTVLSPYLKFGCLS R FYH
Sbjct: 225 FHGGETEALRRMKESLQNKEWVAKFEKPKGDPSAFVKPSTTVLSPYLKFGCLSSRYFYHC 284
Query: 118 LKKI-LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
++ + + H KPPVSL GQ+ WR+F+Y V TPNFD+MKGNKIC Q+ W NE
Sbjct: 285 IQDVHRSVRNHTKPPVSLTGQLLWRDFFYTVSYGTPNFDRMKGNKICKQIPWSENEDLFV 344
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
AW G+TGYP+IDAIM QLR GW+HHLARH+VACFLTRGD+
Sbjct: 345 AWRDGQTGYPWIDAIMIQLRNWGWMHHLARHSVACFLTRGDM 386
>gi|226494726|ref|NP_001146620.1| uncharacterized protein LOC100280217 [Zea mays]
gi|219888051|gb|ACL54400.1| unknown [Zea mays]
Length = 421
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 125/227 (55%), Positives = 155/227 (68%), Gaps = 8/227 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHL-VPTMKEMGL-DESSIPLCK 58
+TYQ VS+ P PA + + LP G E L VPT++E+G D S +
Sbjct: 169 LTYQSFVSIAGE--PPAPAMEEYSELPP--LGDTGEYELLPVPTVEELGYGDISQEEIPP 224
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTTVLSPYLKFGCLSVRLFYHE 117
F GGETEAL+R+++SL NKEWV KFEKP P++ ++PSTTVLSPYLKFGCLS R FYH
Sbjct: 225 FHGGETEALRRMKESLQNKEWVAKFEKPKGDPSAFVKPSTTVLSPYLKFGCLSSRYFYHC 284
Query: 118 LKKI-LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
++ + + H KPPVSL GQ+ WR+F+Y V TPNFD+MKGNKIC Q+ W NE
Sbjct: 285 IQDVHRSVRNHTKPPVSLTGQLLWRDFFYTVSYGTPNFDRMKGNKICKQIPWSENEDLFV 344
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWE 223
AW G+TGYP+IDAIM QLR GW+HHLARH+VACFLTRGD+ E
Sbjct: 345 AWRDGQTGYPWIDAIMIQLRNWGWMHHLARHSVACFLTRGDMCCRCE 391
>gi|398412077|ref|XP_003857369.1| hypothetical protein MYCGRDRAFT_66122 [Zymoseptoria tritici IPO323]
gi|339477254|gb|EGP92345.1| hypothetical protein MYCGRDRAFT_66122 [Zymoseptoria tritici IPO323]
Length = 670
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 120/259 (46%), Positives = 162/259 (62%), Gaps = 31/259 (11%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
VP+++E+G+ + + GGET LK+LE L ++++ FEKP T+P + EP +T L
Sbjct: 223 VPSLEELGM---PVATTQHRGGETIGLKQLEGILKDEDYTGTFEKPKTSPAAFEPQSTFL 279
Query: 101 -SPYLKFGCLSVRLFYHELKKIL-----ATGPHAKPPVSLLGQIYWREFYYVVGSDTP-N 153
SPYL FG LSVR FYH ++ I+ + P + PP SL+GQ+ +R+ Y+ + +
Sbjct: 280 TSPYLHFGALSVRYFYHRVQDIIEKRKKSKQPTSSPPESLIGQLLFRDMYFGAQASLGWS 339
Query: 154 FDKMKGNKIC---------------------CQVDWDTNEKYLEAWSHGKTGYPFIDAIM 192
F + N C +VD +++ + WS+G TG+P+IDAIM
Sbjct: 340 FGQTYNNPHCRFIPWHLPSKVNTASRLITGEYEVDSPEADEWFKRWSNGTTGFPWIDAIM 399
Query: 193 RQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASA 252
RQLR EGWIHHLARH+VACFLTRG Y+SWE G VFEELL+D + A N GNW WLS +A
Sbjct: 400 RQLRQEGWIHHLARHSVACFLTRGGCYISWERGAEVFEELLIDHEAACNIGNWQWLSCTA 459
Query: 253 FFHQFFRVYSPVAFGKKTD 271
FF QF+R YSPVAFGKK D
Sbjct: 460 FFAQFYRCYSPVAFGKKWD 478
>gi|406867153|gb|EKD20192.1| cryptochrome-2 [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 650
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/256 (48%), Positives = 164/256 (64%), Gaps = 28/256 (10%)
Query: 42 PTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTVL 100
PT++E+G ++ P GGET ALK L+K +AN+++ FEKPNTAP + EP STT+L
Sbjct: 223 PTLEELGFPAATTP---HRGGETVALKALDKLIANEKYTATFEKPNTAPTAFEPQSTTLL 279
Query: 101 SPYLKFGCLSVRLFYHELKKILAT--GPHAKPPVSLLGQIYWREFYY-VVGSDTPNFDKM 157
SP+L FG L +R FY ++ ++ + G + PPVSL GQ+ +R+ Y+ S F +
Sbjct: 280 SPHLHFGSLGIREFYWRVQDVVDSFSGKASGPPVSLTGQLLFRDMYFGAQASLGYAFGQT 339
Query: 158 KGNKIC--------CQVDWDTN-------------EKYLEAWSHGKTGYPFIDAIMRQLR 196
N C +V+ DT E++ + W +G TG+P+IDA+MRQL+
Sbjct: 340 MYNSHCRFIPWHLPSKVNHDTKLVMGEYHIDSPQAEEWFQRWKNGVTGFPWIDALMRQLK 399
Query: 197 LEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ 256
EGWIHHL RHAVACFLTRG Y+SWE G VFEELLLD + A NAGNW WLS +AFF Q
Sbjct: 400 QEGWIHHLGRHAVACFLTRGGCYISWERGAEVFEELLLDHETACNAGNWQWLSCTAFFAQ 459
Query: 257 FFRVYSPVAFGKKTDK 272
F+R YSPVAF +K DK
Sbjct: 460 FYRCYSPVAFPQKWDK 475
>gi|156378195|ref|XP_001631029.1| predicted protein [Nematostella vectensis]
gi|156218062|gb|EDO38966.1| predicted protein [Nematostella vectensis]
Length = 498
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 151/238 (63%), Gaps = 2/238 (0%)
Query: 35 HPDEHLVPTMKEMGLDESSIPLCKF-PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSL 93
H ++ VP++ E+G+ + + GGE EAL RL L +K K + L
Sbjct: 188 HSEKFGVPSLAELGIKPADVTCGDMWVGGEREALNRL-GILEDKILGSNSSKNCDGSSVL 246
Query: 94 EPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPN 153
PS T LSPYL+FGCLS +L+Y +L + PP+SL Q+ WREF++ + S PN
Sbjct: 247 FPSRTQLSPYLRFGCLSPKLYYKKLTGAYVKMQFSPPPMSLYRQLIWREFFFTLASKNPN 306
Query: 154 FDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
D++ N +C Q+ W+ N+ + W G TG+P+IDAIMRQL+ EGWIHHLAR +V CFL
Sbjct: 307 MDQVNDNPLCIQISWEENKDHFLCWKQGNTGFPWIDAIMRQLQKEGWIHHLARLSVGCFL 366
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
TRG L++SWEEG FEEL LDA+W+MN+G+W+WLS SAFFH + PV GKK D
Sbjct: 367 TRGCLWISWEEGLRAFEELQLDAEWSMNSGSWLWLSCSAFFHGQIPWFCPVEVGKKLD 424
>gi|449304579|gb|EMD00586.1| hypothetical protein BAUCODRAFT_175264 [Baudoinia compniacensis
UAMH 10762]
Length = 647
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/269 (44%), Positives = 164/269 (60%), Gaps = 32/269 (11%)
Query: 32 GILHPD-EHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAP 90
GI P+ ++ VPT+KE+GL ++ P GGE+ L +L LA++++ FEKP T+P
Sbjct: 213 GIAGPNGDYSVPTLKELGLKAATTP---HRGGESVVLGKLHIILADEDYTGTFEKPKTSP 269
Query: 91 NSLEPSTTVL-SPYLKFGCLSVRLFYHELKKIL-----ATGPHAKPPVSLLGQIYWREFY 144
+ EP T L SPYL FG LS R FYH +++I+ A P ++PP SL GQ+ +R+ Y
Sbjct: 270 AAFEPQATCLTSPYLHFGALSCRYFYHRIEEIVERRRKAKRPVSEPPTSLTGQLLFRDMY 329
Query: 145 YVVGSDTP-NFDKMKGNKIC---------------------CQVDWDTNEKYLEAWSHGK 182
+ + +F + N C +VD + ++ W GK
Sbjct: 330 FAAQAALGYSFGQTYNNDHCRFIPWHLPSRIDVSTKLITGDYEVDDEVKQREFIRWREGK 389
Query: 183 TGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNA 242
TG+P+IDAIMRQL+ EGWIHHLARHAVACFLTRG Y+SWE G VFEE L+D + A N
Sbjct: 390 TGFPWIDAIMRQLKYEGWIHHLARHAVACFLTRGGCYISWERGAEVFEEWLIDHEAACNI 449
Query: 243 GNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
GNW WLS +AF+ QF+R YSP+AFG+K D
Sbjct: 450 GNWQWLSCTAFYSQFYRCYSPIAFGRKWD 478
>gi|330915233|ref|XP_003296949.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1]
gi|311330639|gb|EFQ94953.1| hypothetical protein PTT_07199 [Pyrenophora teres f. teres 0-1]
Length = 655
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/257 (47%), Positives = 161/257 (62%), Gaps = 28/257 (10%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTV 99
VPTM+E+GL ++ GGETEAL+ L++ +AN+E+ FEKP TAP + EP STT+
Sbjct: 222 VPTMEELGLKPATT---AHRGGETEALRALDEIIANEEYTATFEKPKTAPTAFEPQSTTL 278
Query: 100 LSPYLKFGCLSVRLFYHELKKILAT--GPHAKPPVSLLGQIYWREFYYVVGSDTP-NFDK 156
LSP++ FG LS RLFY + ++ G ++PPVSL GQ+ +R+ Y+ + +F +
Sbjct: 279 LSPHMHFGSLSCRLFYWRAQDVVDKFKGKASQPPVSLTGQLLFRDMYFGAQAALGYSFGQ 338
Query: 157 MKGNKICCQVDW------DTN---------------EKYLEAWSHGKTGYPFIDAIMRQL 195
N C + W DT E + + W HG+TG+P+IDA+MRQL
Sbjct: 339 TYNNPNCRFIPWHLPSKIDTKSGLITGEYMVDNAEAETHFQRWKHGQTGFPWIDALMRQL 398
Query: 196 RLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH 255
EGWIHHL RHAVACFLTRG Y+ WE G VFEE L+D + A N GNW WLS +AFF
Sbjct: 399 AQEGWIHHLGRHAVACFLTRGGCYIDWERGAEVFEEWLIDHEAACNIGNWQWLSCTAFFA 458
Query: 256 QFFRVYSPVAFGKKTDK 272
QF+R YSP+AF +K DK
Sbjct: 459 QFYRCYSPIAFPQKWDK 475
>gi|189188250|ref|XP_001930464.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972070|gb|EDU39569.1| cryptochrome-2 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 655
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/257 (47%), Positives = 161/257 (62%), Gaps = 28/257 (10%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTV 99
VPTM+E+GL ++ GGETEAL+ L++ +AN+E+ FEKP TAP + EP STT+
Sbjct: 222 VPTMEELGLKPATT---AHRGGETEALRALDEIIANEEYTATFEKPKTAPTAFEPQSTTL 278
Query: 100 LSPYLKFGCLSVRLFYHELKKILAT--GPHAKPPVSLLGQIYWREFYYVVGSDTP-NFDK 156
LSP++ FG LS RLFY + ++ G ++PPVSL GQ+ +R+ Y+ + +F +
Sbjct: 279 LSPHMHFGSLSCRLFYWRAQDVVDKFKGKASQPPVSLTGQLLFRDMYFGAQAALGYSFGQ 338
Query: 157 MKGNKICCQVDW------DTN---------------EKYLEAWSHGKTGYPFIDAIMRQL 195
N C + W DT E + + W HG+TG+P+IDA+MRQL
Sbjct: 339 TYNNPNCRFIPWHLPSKIDTKSGLITGEYMVDNAEAEAHFQRWKHGQTGFPWIDALMRQL 398
Query: 196 RLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH 255
EGWIHHL RHAVACFLTRG Y+ WE G VFEE L+D + A N GNW WLS +AFF
Sbjct: 399 AQEGWIHHLGRHAVACFLTRGGCYIDWERGAEVFEEWLIDHEAACNIGNWQWLSCTAFFA 458
Query: 256 QFFRVYSPVAFGKKTDK 272
QF+R YSP+AF +K DK
Sbjct: 459 QFYRCYSPIAFPQKWDK 475
>gi|224002945|ref|XP_002291144.1| Cryptochrome/Photolyase family 1 [Thalassiosira pseudonana
CCMP1335]
gi|220972920|gb|EED91251.1| Cryptochrome/Photolyase family 1, partial [Thalassiosira pseudonana
CCMP1335]
Length = 556
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 117/222 (52%), Positives = 149/222 (67%), Gaps = 11/222 (4%)
Query: 61 GGETEALKRLEKSL-ANKEWVRKFEKPNTAPNSLE-PSTTVLSPYLKFGCLSVRLFYHEL 118
GGET AL +L+ ++ A +W FEKP T+ + PSTTVLSPYL GCLS R +H +
Sbjct: 232 GGETLALAQLQSTVTARPDWTASFEKPKTSCTEVSTPSTTVLSPYLSLGCLSPRKAWHAV 291
Query: 119 ----KKILATGPHAKPPVSLLGQIYWREFYYVVG----SDTP-NFDKMKGNKICCQVDWD 169
+K + KPPVSL GQ+ WR+F ++ + +P ++ +M+ N C V W
Sbjct: 292 ADANRKASSKVNKTKPPVSLHGQLLWRDFNNLIAHSANAQSPGSWGRMQDNPYCRNVPWS 351
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
++ K L+AW GKTG+P+IDA M QLR EGWIHHL RHAVACFLTRGDL+ SWE G F
Sbjct: 352 SDPKLLKAWKDGKTGFPWIDACMAQLRTEGWIHHLGRHAVACFLTRGDLWQSWEMGADHF 411
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
E LLDAD+A+N NW+WLS S FF+Q+FR YSPVAF KK D
Sbjct: 412 EGELLDADYALNNFNWLWLSCSGFFYQYFRCYSPVAFQKKND 453
>gi|397603437|gb|EJK58421.1| hypothetical protein THAOC_21454 [Thalassiosira oceanica]
Length = 564
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 145/220 (65%), Gaps = 9/220 (4%)
Query: 61 GGETEALKRLEKSL-ANKEWVRKFEKPNTAPNSL-EPSTTVLSPYLKFGCLSVRLFYH-- 116
GGE+ AL RL+K++ A W ++EKP T+ + +PSTTVLSPYL GC+S R +H
Sbjct: 244 GGESYALDRLQKTITARPNWTAQYEKPKTSCTEVSDPSTTVLSPYLSIGCISPRTVWHAI 303
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPN-----FDKMKGNKICCQVDWDTN 171
E A +PPVSL GQ+ WR+F ++ + + ++K N C + W ++
Sbjct: 304 ETANKQAKTNRTQPPVSLHGQLLWRDFNNLMAHSANSQHAGSWGQIKNNAFCRDIPWSSD 363
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
L +W G+TGYP+IDA M QLR EGWIHHL RHAVACFLTRGDL+ SW EG FE
Sbjct: 364 PNMLSSWKEGRTGYPWIDACMAQLRSEGWIHHLGRHAVACFLTRGDLWQSWVEGADHFEA 423
Query: 232 LLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+A+N+ NWMWLSAS FF+Q+FR YSP+ F KK D
Sbjct: 424 ELLDADYALNSFNWMWLSASGFFYQYFRCYSPIQFQKKND 463
>gi|425767796|gb|EKV06352.1| DNA photolyase, putative [Penicillium digitatum Pd1]
gi|425769478|gb|EKV07970.1| DNA photolyase, putative [Penicillium digitatum PHI26]
Length = 604
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 121/267 (45%), Positives = 167/267 (62%), Gaps = 29/267 (10%)
Query: 33 ILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS 92
++ P +++G+D S GGE EAL+ L + + N++++ +FEKPNT+P
Sbjct: 224 LMGPSRDFAVPWQDIGIDLSQA-TTPHRGGEQEALRILGECIKNEDYIGRFEKPNTSPAD 282
Query: 93 LEP-STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVS-----LLGQIYWREFYYV 146
EP STT+LSP+L FG LSVR F+ +++ +L AK PVS L GQ+ +R+ Y+
Sbjct: 283 FEPQSTTLLSPHLHFGSLSVRKFWWDVEGVLNKHRKAKKPVSTVPTNLPGQLLFRDMYFA 342
Query: 147 VGSDTPN-FDKMKGNKICCQVDW--DTN-------------------EKYLEAWSHGKTG 184
+ + F + GN+I +DW TN E++ + W G+TG
Sbjct: 343 AQAPLGHAFSRTYGNEIARFIDWHLQTNPPSQDGSIEGSYEVDSQEAEEWFQRWKDGRTG 402
Query: 185 YPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGN 244
+P+IDA+MRQLR EGWIHHL RH+VACFLTRG Y+SWE G +VFEELL+D + A N GN
Sbjct: 403 FPWIDALMRQLRQEGWIHHLGRHSVACFLTRGGCYVSWERGAAVFEELLIDHEVACNVGN 462
Query: 245 WMWLSASAFFHQFFRVYSPVAFGKKTD 271
WMWLS +AFF QF+R YSP+AFGKK D
Sbjct: 463 WMWLSCTAFFAQFYRCYSPIAFGKKWD 489
>gi|453088843|gb|EMF16883.1| FAD_binding_7-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 637
Score = 223 bits (568), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 122/264 (46%), Positives = 159/264 (60%), Gaps = 31/264 (11%)
Query: 42 PTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL- 100
PT++E+G+ ++ P GGET L+ LEK L ++E+ FEKP T+P + EP +T L
Sbjct: 224 PTLEELGMAPATSP---HKGGETVILEALEKILQDEEYTSTFEKPKTSPAAFEPQSTFLT 280
Query: 101 SPYLKFGCLSVRLFYHELKKILAT-----GPHAKPPVSLLGQIYWREFYYVVGSDTP-NF 154
SPYL FG LS R FYH + +I+ P + PP SL GQ+ +R+ Y+ + +
Sbjct: 281 SPYLHFGALSCRYFYHRVAEIVEKRKKEKKPTSAPPESLTGQLLFRDMYFAAQAHGGWQY 340
Query: 155 DKMKGNKIC--------CQVDWDTN-------------EKYLEAWSHGKTGYPFIDAIMR 193
+ GN C +VD DT E++ + WS G TG+P+IDA MR
Sbjct: 341 GQTLGNAHCRFIPWHLPSKVDMDTKRITAEHEIDDEEKEEWFQRWSQGTTGFPWIDAHMR 400
Query: 194 QLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF 253
LR GWIHHLARH+VACFLTRG Y+SWE G VFEELL+D + A N GNW WLS +AF
Sbjct: 401 ALRSTGWIHHLARHSVACFLTRGGCYISWERGAEVFEELLIDHEAACNIGNWQWLSCTAF 460
Query: 254 FHQFFRVYSPVAFGKKTDKFELLL 277
F QFFR YSP+AFGKK D L +
Sbjct: 461 FSQFFRCYSPIAFGKKWDANGLYI 484
>gi|389622365|ref|XP_003708836.1| cryptochrome-1 [Magnaporthe oryzae 70-15]
gi|351648365|gb|EHA56224.1| cryptochrome-1 [Magnaporthe oryzae 70-15]
gi|440473506|gb|ELQ42297.1| cryptochrome-1 [Magnaporthe oryzae Y34]
gi|440489726|gb|ELQ69353.1| cryptochrome-1 [Magnaporthe oryzae P131]
Length = 679
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 118/264 (44%), Positives = 159/264 (60%), Gaps = 36/264 (13%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTV 99
+ T++E+G ++ P + GGE+ AL+ L+ + N+ + F KP T+P + EP STT+
Sbjct: 223 IETLEELGYPPATTP---YKGGESLALRELDAIIENQVYTATFRKPQTSPAAFEPQSTTL 279
Query: 100 LSPYLKFGCLSVRLFYHELKKILATGPHAK------PPVSLLGQIYWREFYYVV-GSDTP 152
LSP + FG LSVRLFYH ++ + AK PP SL GQ+ +R+ Y+ + P
Sbjct: 280 LSPAMHFGSLSVRLFYHRVQDTVDAYNQAKKKGASLPPESLTGQLLFRDMYFAAQAAIGP 339
Query: 153 NFDKMKGNKIC-------------------------CQVDWDTNEKYLEAWSHGKTGYPF 187
F + GN C +VD + E + W G+TG+P+
Sbjct: 340 CFSQTAGNAHCRFIPWHLPSHVEDNAVSGQVLRKFEYEVDSEQAESWFRRWEAGQTGFPW 399
Query: 188 IDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMW 247
IDA+MRQLR+EGWIHHL RH+VACFLTRG Y+SWE G VFEELLLD + A NAGNW W
Sbjct: 400 IDALMRQLRVEGWIHHLGRHSVACFLTRGGCYVSWERGLDVFEELLLDHEPACNAGNWQW 459
Query: 248 LSASAFFHQFFRVYSPVAFGKKTD 271
LS +AFF Q+FR YSP++FGKK D
Sbjct: 460 LSCTAFFSQYFRCYSPISFGKKWD 483
>gi|389622363|ref|XP_003708835.1| cryptochrome-1, variant [Magnaporthe oryzae 70-15]
gi|351648364|gb|EHA56223.1| cryptochrome-1, variant [Magnaporthe oryzae 70-15]
Length = 528
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 118/264 (44%), Positives = 159/264 (60%), Gaps = 36/264 (13%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTV 99
+ T++E+G ++ P + GGE+ AL+ L+ + N+ + F KP T+P + EP STT+
Sbjct: 72 IETLEELGYPPATTP---YKGGESLALRELDAIIENQVYTATFRKPQTSPAAFEPQSTTL 128
Query: 100 LSPYLKFGCLSVRLFYHELKKILATGPHAK------PPVSLLGQIYWREFYYVV-GSDTP 152
LSP + FG LSVRLFYH ++ + AK PP SL GQ+ +R+ Y+ + P
Sbjct: 129 LSPAMHFGSLSVRLFYHRVQDTVDAYNQAKKKGASLPPESLTGQLLFRDMYFAAQAAIGP 188
Query: 153 NFDKMKGNKIC-------------------------CQVDWDTNEKYLEAWSHGKTGYPF 187
F + GN C +VD + E + W G+TG+P+
Sbjct: 189 CFSQTAGNAHCRFIPWHLPSHVEDNAVSGQVLRKFEYEVDSEQAESWFRRWEAGQTGFPW 248
Query: 188 IDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMW 247
IDA+MRQLR+EGWIHHL RH+VACFLTRG Y+SWE G VFEELLLD + A NAGNW W
Sbjct: 249 IDALMRQLRVEGWIHHLGRHSVACFLTRGGCYVSWERGLDVFEELLLDHEPACNAGNWQW 308
Query: 248 LSASAFFHQFFRVYSPVAFGKKTD 271
LS +AFF Q+FR YSP++FGKK D
Sbjct: 309 LSCTAFFSQYFRCYSPISFGKKWD 332
>gi|348680515|gb|EGZ20331.1| DNA photolyase cryptochrome [Phytophthora sojae]
Length = 708
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 120/269 (44%), Positives = 157/269 (58%), Gaps = 36/269 (13%)
Query: 36 PDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP 95
P+ +VP + +GL S P F GGE+EA+KRL+ + V FEKP T+P + +P
Sbjct: 336 PEPFVVPPLTALGLTPPS-PHAAFYGGESEAMKRLDAFCQEERRVGLFEKPKTSPVAFDP 394
Query: 96 -STTVLSPYLKFGCLSVRLFYH-----ELKKILATGPHAKPPVSLLGQIYWREFYYVVGS 149
STT LS YL FGCLS R F++ +LK L GP V+L GQ+ WREF+Y
Sbjct: 395 PSTTTLSAYLTFGCLSAREFFYRIMFIQLKFPLRPGPTQ---VTLEGQLMWREFFYCYAC 451
Query: 150 DTPNFDKMKGNKICCQVDW----------------------DTNEKY----LEAWSHGKT 183
TP FD K N C Q+DW D +EK L+ W G+T
Sbjct: 452 GTPGFDSQKQNPGCKQIDWRLRAEVYDSHPEQHHQGAIVTKDADEKLALHQLQCWKEGRT 511
Query: 184 GYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAG 243
G+P+IDA+MRQ+ EGW HH RHAVACFLTRG LY+SW +G + F+E L+D DW +N G
Sbjct: 512 GFPWIDAVMRQINQEGWAHHAGRHAVACFLTRGVLYISWLQGAAYFQEKLIDMDWPINIG 571
Query: 244 NWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
NW+W+SAS FF + RV SP F ++ D+
Sbjct: 572 NWLWVSASCFFSNYRRVASPTTFPQRWDQ 600
>gi|451997801|gb|EMD90266.1| hypothetical protein COCHEDRAFT_1139413, partial [Cochliobolus
heterostrophus C5]
Length = 650
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/257 (46%), Positives = 157/257 (61%), Gaps = 28/257 (10%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTV 99
VPTM+E+GL ++ P GGET AL+ L+K +AN+++ FEKPNTAP + EP STT+
Sbjct: 222 VPTMEELGLKPATTP---HRGGETIALQALDKIIANEKYTATFEKPNTAPTAFEPQSTTL 278
Query: 100 LSPYLKFGCLSVRLFYHELKKILAT--GPHAKPPVSLLGQIYWREFYY-VVGSDTPNFDK 156
LSP++ FG LS RLFY + + G ++PP SL GQ+ +R+ Y+ S +F +
Sbjct: 279 LSPHMHFGSLSCRLFYWRAQDVADKYKGKASQPPTSLTGQLLFRDMYFGAQASLGYSFGQ 338
Query: 157 MKGNKICCQVDWD---------------------TNEKYLEAWSHGKTGYPFIDAIMRQL 195
N C + W E + + W G+TG+P+IDA+MRQL
Sbjct: 339 TYNNSHCRFIPWHLPSKIDASSGLITGEYTIDNAEAESHFQRWKQGRTGFPWIDALMRQL 398
Query: 196 RLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH 255
EGWIHHL RHAVACFLTRG Y+ WE G VFEE L+D + A N GNW WLS +AFF
Sbjct: 399 AQEGWIHHLGRHAVACFLTRGGCYIDWERGAEVFEEWLIDHEAACNIGNWQWLSCTAFFA 458
Query: 256 QFFRVYSPVAFGKKTDK 272
QF+R YSPVAF +K DK
Sbjct: 459 QFYRCYSPVAFPQKWDK 475
>gi|340518659|gb|EGR48899.1| DNA photolyase [Trichoderma reesei QM6a]
Length = 628
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 126/300 (42%), Positives = 178/300 (59%), Gaps = 33/300 (11%)
Query: 7 VSVLESLPKPKPADDAPTSLPRECQGILH---PD-EHLVPTMKEMGLDESSIPLCKFPGG 62
V + P PKP D + RE H P+ + + T++E+G ++ P+ GG
Sbjct: 185 VDFEQHRPDPKP-DINESHKTREDTAYKHISGPNGDFAIETLEELGFAPATTPIR---GG 240
Query: 63 ETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTVLSPYLKFGCLSVRLFYHELKKI 121
ET AL+RL++ + +K ++ F+KP T+P +P +TT+LSP+ FG LSVRLFYH ++++
Sbjct: 241 ETLALERLDELIKDKTYIATFKKPKTSPAQFDPPATTLLSPFFHFGALSVRLFYHRVQEV 300
Query: 122 LAT-GPHAK-PPVSLLGQIYWREFYYVVGSD-TPNFDKMKGNKICCQVDW---------- 168
+ + GP A PP SL+GQ+ +R+ Y+ + +F + N C V W
Sbjct: 301 IDSFGPGASSPPESLIGQVLFRDMYFAAQAALGASFAQTATNPYCRFVPWHLPSKRDPHT 360
Query: 169 -----------DTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
D E + W G TG+P+IDA+MRQLR +GWIHHL RH+VACFLTRG
Sbjct: 361 GLTTGDHHIDSDQAETWFRRWKAGTTGFPWIDALMRQLRHDGWIHHLGRHSVACFLTRGG 420
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLL 277
Y+ WE G VFEELLLD + A N GNW WLS AFF Q++RVYSPV+FG+K D+ L+
Sbjct: 421 CYVDWERGAEVFEELLLDHEPACNIGNWQWLSCVAFFAQYYRVYSPVSFGQKWDRDGALI 480
>gi|451847270|gb|EMD60578.1| hypothetical protein COCSADRAFT_244496 [Cochliobolus sativus
ND90Pr]
Length = 654
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/257 (47%), Positives = 160/257 (62%), Gaps = 28/257 (10%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTV 99
VPTM+++GL ++ P GGET AL+ L+K +A++E+ FEKPNTAP + EP STT+
Sbjct: 222 VPTMEDLGLKLATTP---HRGGETVALQALDKIIADEEYTATFEKPNTAPTAFEPQSTTL 278
Query: 100 LSPYLKFGCLSVRLFYHELKKILAT--GPHAKPPVSLLGQIYWREFYY-VVGSDTPNFDK 156
LSP++ FG LS RLFY + + G ++PP SL GQ+ +R+ Y+ S +F +
Sbjct: 279 LSPHMHFGSLSCRLFYWRAQDVADKYKGRASQPPTSLTGQLLFRDMYFGAQASLGYSFGQ 338
Query: 157 MKGNKICCQVDW------DTN---------------EKYLEAWSHGKTGYPFIDAIMRQL 195
N C + W DT+ E + + W G+TG+P+IDA+MRQL
Sbjct: 339 TYNNSHCRFIPWHLPSKVDTSSSLITGEYTIDNAEAESHFQRWKQGRTGFPWIDALMRQL 398
Query: 196 RLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH 255
EGWIHHL RHAVACFLTRG Y+ WE G VFEE L+D + A N GNW WLS +AFF
Sbjct: 399 AQEGWIHHLGRHAVACFLTRGGCYIDWERGAEVFEEWLIDHEAACNIGNWQWLSCTAFFA 458
Query: 256 QFFRVYSPVAFGKKTDK 272
QF+R YSPVAF +K DK
Sbjct: 459 QFYRCYSPVAFPQKWDK 475
>gi|301097563|ref|XP_002897876.1| cryptochrome, putative [Phytophthora infestans T30-4]
gi|262106624|gb|EEY64676.1| cryptochrome, putative [Phytophthora infestans T30-4]
Length = 656
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 121/239 (50%), Positives = 149/239 (62%), Gaps = 24/239 (10%)
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPS--TTVLSPYLKFGCLSVRLFYHEL 118
GGE AL L N+ V KFEKP T+P PS TT LSPYL FG +S R F H +
Sbjct: 323 GGEQIALGILRDYCRNEGRVVKFEKPKTSPAQTTPSASTTSLSPYLYFGSISPRTFLHHV 382
Query: 119 KKILATGPHAKP----PVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWD----- 169
+ I HAK PVSL GQ+ WREF++ G FDKM+ + C Q+DW
Sbjct: 383 RGIQEH--HAKALSATPVSLDGQLLWREFFHCHGRANAYFDKMEESPTCLQIDWRWHTIP 440
Query: 170 ------TNEKYL-----EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
T++ L +AW G+TG+P+IDAIM QL+ EGW+HHLARH+VACFLTRGDL
Sbjct: 441 EREEDMTDDDKLARSQFQAWIDGQTGFPWIDAIMIQLKEEGWMHHLARHSVACFLTRGDL 500
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLL 277
Y+SW G VF+E L+D DW++N GNW+WLSAS FF +FRVYSP FGKK D L +
Sbjct: 501 YISWVRGLEVFQERLIDHDWSINCGNWLWLSASYFFSAYFRVYSPSTFGKKWDPEGLFI 559
>gi|452989588|gb|EME89343.1| hypothetical protein MYCFIDRAFT_201892 [Pseudocercospora fijiensis
CIRAD86]
Length = 655
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 119/258 (46%), Positives = 155/258 (60%), Gaps = 31/258 (12%)
Query: 42 PTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL- 100
PT+ E+G+ ++ P GGE+ L LE LA++++ F+KP T+P + EP +T L
Sbjct: 224 PTLAELGMKAATSP---HKGGESVVLHSLENILADEDYAATFQKPKTSPAAFEPQSTFLT 280
Query: 101 SPYLKFGCLSVRLFYHELKKILA-----TGPHAKPPVSLLGQIYWREFYYVVGSDTP-NF 154
SPYL FG LS R FYH + +I+ P + PP SL GQ+ +R+ Y+ + +F
Sbjct: 281 SPYLHFGALSCRYFYHRVAEIVERRKKEKKPTSSPPESLAGQLLFRDMYFAAQASLGWSF 340
Query: 155 DKMKGNKICCQVDW-------------------DTNEK--YLEAWSHGKTGYPFIDAIMR 193
+ N C V W D EK + + W G TG+P+IDAIMR
Sbjct: 341 GQTYNNSHCRFVPWHLPSKVDILSKRTTGAYEIDDEEKEIWFQRWRSGTTGFPWIDAIMR 400
Query: 194 QLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF 253
QLR EGWIHHLARH+VACFLTRG Y+SWE G VFEELL+D + A N GNW WLS +AF
Sbjct: 401 QLRAEGWIHHLARHSVACFLTRGGCYISWERGAEVFEELLIDHEAACNIGNWQWLSCTAF 460
Query: 254 FHQFFRVYSPVAFGKKTD 271
F QF+R YSP+AFGKK D
Sbjct: 461 FAQFYRCYSPIAFGKKWD 478
>gi|361124167|gb|EHK96280.1| putative Cryptochrome-2 [Glarea lozoyensis 74030]
Length = 586
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 116/256 (45%), Positives = 164/256 (64%), Gaps = 28/256 (10%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTV 99
VP+++E+G+ ++ K GGE+ ALK L K +A+K++ FEKP TAP EP +TT+
Sbjct: 171 VPSLEELGMQPAT---TKHRGGESLALKALSKIIADKKYTATFEKPKTAPTDFEPQATTL 227
Query: 100 LSPYLKFGCLSVRLFYHELKKILAT--GPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
LSP+L FG LS+R FY +++ +A+ G ++PPVSLLGQ+Y+R+ Y+ + +
Sbjct: 228 LSPHLHFGSLSIREFYWQVQDTIASYKGKSSEPPVSLLGQLYFRDMYFGAQAAGGWYYAQ 287
Query: 158 KGNKICCQ---------VDWDTN-------------EKYLEAWSHGKTGYPFIDAIMRQL 195
N C+ +D DT E++ W +G TG+P+IDA+MRQL
Sbjct: 288 TINNPHCRFIPFSLPAKIDPDTKLITGEFQSTDSQAEEWFVRWKYGLTGFPWIDALMRQL 347
Query: 196 RLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH 255
RLEGWIHHL RHAVACFLTRG ++ WE G VFEE L+D + A N GNW WLS +AF+
Sbjct: 348 RLEGWIHHLGRHAVACFLTRGGCFIHWERGAEVFEEWLIDHEVASNVGNWQWLSCTAFYS 407
Query: 256 QFFRVYSPVAFGKKTD 271
++R+YSP+AFG+K D
Sbjct: 408 MYYRMYSPIAFGQKWD 423
>gi|402076336|gb|EJT71759.1| cryptochrome-1 [Gaeumannomyces graminis var. tritici R3-111a-1]
Length = 661
Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 117/261 (44%), Positives = 159/261 (60%), Gaps = 33/261 (12%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTV 99
V T+ E+G ++ P GGET AL+RL++ +A++E+ F KP ++P +P STT+
Sbjct: 230 VETLAELGYPPATTP---HKGGETLALQRLDELMADQEYTATFRKPQSSPADFDPPSTTL 286
Query: 100 LSPYLKFGCLSVRLFYHELKKILAT------GPHAKPPVSLLGQIYWREFYYVVGSDTPN 153
LSP+L FG LSVRLFYH ++ + ++PP SL GQ+ +R+ Y+ + +
Sbjct: 287 LSPFLHFGALSVRLFYHRVQDAVDAYVKSRKKGASQPPESLTGQLLFRDMYFAAQAAIGD 346
Query: 154 -FDKMKGNKIC----------------------CQVDWDTNEKYLEAWSHGKTGYPFIDA 190
F + GN C VD E + W G+TG+P+IDA
Sbjct: 347 VFGQTAGNPRCRFIPWHLPSRLEGDAGPLRSFAYDVDSAQAEDWFRRWEAGRTGFPWIDA 406
Query: 191 IMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSA 250
+MRQLR+EGWIHHL RH+VACFLTRG Y+SWE G VFEELLLD + + NAGNW WLS
Sbjct: 407 LMRQLRVEGWIHHLGRHSVACFLTRGGCYVSWERGLDVFEELLLDHEPSCNAGNWQWLSC 466
Query: 251 SAFFHQFFRVYSPVAFGKKTD 271
+AFF Q+FR YSPV+FG+K D
Sbjct: 467 TAFFSQYFRCYSPVSFGRKWD 487
>gi|325180459|emb|CCA14865.1| cryptochrome putative [Albugo laibachii Nc14]
Length = 616
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 146/233 (62%), Gaps = 24/233 (10%)
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTVLSPYLKFGCLSVRLFYHELK 119
GGE+ AL+RLE + +E V FEKP T+P + P STT LSPYL FGCLSVR ++ +
Sbjct: 310 GGESVALERLEVFCSIEERVGCFEKPKTSPVQMNPPSTTALSPYLAFGCLSVRALFYRIM 369
Query: 120 KI---LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDW-------- 168
I ++ P SL GQ+ WREF+Y + P F + N +C ++ W
Sbjct: 370 FIQLNFSSVSKGSPATSLDGQLMWREFFYCYAHNVPEFASPEQNPLCRKIGWRLQNEDSD 429
Query: 169 ------DTNEKYLEA------WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
+ E+ L A W+ GKTG+P+IDAIMRQ+ EGW HHLARHAVACFLTRG
Sbjct: 430 PLTTHSSSKEEDLVASEQFTCWARGKTGFPWIDAIMRQILTEGWAHHLARHAVACFLTRG 489
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKK 269
DLY+SW G +F+ELL+D DWA+N GNW+W+SAS FFH F V+SP F ++
Sbjct: 490 DLYISWIHGAKLFQELLIDMDWAINVGNWLWVSASCFFHDFQNVFSPSTFPQQ 542
>gi|323455593|gb|EGB11461.1| hypothetical protein AURANDRAFT_20741 [Aureococcus anophagefferens]
Length = 529
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/241 (50%), Positives = 147/241 (60%), Gaps = 11/241 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANK--EWVRKFEKPNTAPN--SLEPS 96
VPT++ MG + GGE+ L RLE +LA +W R FEKP T ++PS
Sbjct: 195 VPTLEAMGYEAPPAAAFGVAGGESAGLARLEAALARDGGKWARAFEKPKTKSTKFDVDPS 254
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
TTVLSPYLKFGC+S RLF L + A G HA+PP SLLGQ+Y+RE Y
Sbjct: 255 TTVLSPYLKFGCVSARLFRARLADVYAGGSHAQPPTSLLGQLYFREMAYANALKHGAAFA 314
Query: 157 MKGNKICCQVDWD------TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVA 210
+ +C + WD L AW G+TGYPF+DA MRQLR GWIHHLARHAVA
Sbjct: 315 ASPSPVCADIPWDDPATDAAAAARLRAWEAGETGYPFVDAAMRQLRETGWIHHLARHAVA 374
Query: 211 CFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKK 269
CFLTRGDL+L W EG VF+ LLDADWA+N NW+ L+ A + FFRVYSPV K+
Sbjct: 375 CFLTRGDLWLPWTEGARVFDRDLLDADWAVNNFNWLGLAGVASWSPPFFRVYSPVPNHKQ 434
Query: 270 T 270
+
Sbjct: 435 S 435
>gi|452848446|gb|EME50378.1| hypothetical protein DOTSEDRAFT_145202, partial [Dothistroma
septosporum NZE10]
Length = 640
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/297 (41%), Positives = 172/297 (57%), Gaps = 35/297 (11%)
Query: 7 VSVLESLPKPKPADDAPTSLPRECQ---GILHPDEHLVP-TMKEMGLDESSIPLCKFPGG 62
+++ ++ P P+P + E GI P P +++E+G+ ++ P GG
Sbjct: 185 LNIEQTQPAPEPDINKKHRDGEESSYSAGIAGPKGDFAPPSLEELGMPAATSP---HKGG 241
Query: 63 ETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL-SPYLKFGCLSVRLFYHELKKI 121
ET L+RL K L ++++ F+KP T+P + EP +T L SPYL FG LS R FYH++++I
Sbjct: 242 ETVILERLRKILEDEDYCGTFQKPKTSPAAFEPQSTFLTSPYLHFGALSCRYFYHKIEEI 301
Query: 122 L-----ATGPHAKPPVSLLGQIYWREFYYVVGSDTP-NFDKMKGNKIC------------ 163
+ A + PP SL GQ+ +R+ Y+ + +F + N C
Sbjct: 302 VKKRKKANKTVSTPPESLAGQLLFRDMYFAAQAALGYSFGQTYNNPNCRFIPWHLPSKID 361
Query: 164 ---------CQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
+VD E + W+ G TG+P+IDAIMRQLR EGWIHHLARH+VACFLT
Sbjct: 362 LKTKLITGEYEVDDPVKETEFKRWADGTTGFPWIDAIMRQLRQEGWIHHLARHSVACFLT 421
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
RG Y+SWE G VFEELL+D + A N GNW WLS +AFF QF+R YSP+AFGKK D
Sbjct: 422 RGGAYISWERGAEVFEELLIDHEAACNIGNWQWLSCTAFFAQFYRCYSPIAFGKKWD 478
>gi|45643657|gb|AAS72904.1| cryptochrome 2 variant 1, partial [Passer domesticus]
Length = 361
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 146/224 (65%), Gaps = 5/224 (2%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK P + C+ + H D + VP+++E+G +
Sbjct: 138 LTYKRFQAIISRMELPKKPVSTVISQQMETCKVDIQENHDDVYGVPSLEELGFPTDGLAP 197
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 198 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 257
Query: 117 ELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L ++ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L
Sbjct: 258 RLWELYKKVKRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPWDRNPEAL 317
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLY 219
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL+
Sbjct: 318 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLW 361
>gi|346324524|gb|EGX94121.1| cryptochrome-2 [Cordyceps militaris CM01]
Length = 902
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 126/284 (44%), Positives = 168/284 (59%), Gaps = 29/284 (10%)
Query: 15 KPKPADDAPTSLPRECQGILHPD-EHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKS 73
KP + T E + I P + + TM+E+G ++ P GGET ALK L+
Sbjct: 195 KPDANSERRTKKDTEYRSIAGPKGDFSIETMEELGFPSATTP---HKGGETRALKLLDDI 251
Query: 74 LANKEWVRKFEKPNTAPNSLEP-STTVLSPYLKFGCLSVRLFYHELKKILAT-GPHAK-P 130
+K++ FEKP T+P EP STT+LSP+L FG LSVR FY ++ I+ G A P
Sbjct: 252 AKDKKYTATFEKPKTSPAQFEPQSTTLLSPFLHFGALSVREFYWRVQDIVDKYGKGASMP 311
Query: 131 PVSLLGQIYWREFYYVV-GSDTPNFDKMKGNKIC--------CQVDWDTN---------- 171
P SL GQ+++R+ Y+ + P F + GN C +VD +T
Sbjct: 312 PASLTGQLFFRDMYFAAQAAIGPKFTQTLGNDHCRFIPWHLPSKVDEETGLSTGEYRVDS 371
Query: 172 ---EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSV 228
E++ + W G TG+P+IDA+MRQLR +GWIHHL RH+VACFLTRG Y+ WE G V
Sbjct: 372 PEAEQWFQRWKVGMTGFPWIDALMRQLRHDGWIHHLGRHSVACFLTRGGCYVDWERGAEV 431
Query: 229 FEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
FEE LLD + A NAGNW WLS +AFF Q+FR+YSPV+F +K DK
Sbjct: 432 FEEYLLDHEPACNAGNWQWLSCTAFFSQYFRMYSPVSFPQKWDK 475
>gi|396460940|ref|XP_003835082.1| hypothetical protein LEMA_P072250.1 [Leptosphaeria maculans JN3]
gi|312211632|emb|CBX91717.1| hypothetical protein LEMA_P072250.1 [Leptosphaeria maculans JN3]
Length = 709
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/257 (47%), Positives = 157/257 (61%), Gaps = 28/257 (10%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTV 99
VPTMKE+GL + GGET AL+ LEK +AN+E+ FEKP TAP + EP +TT+
Sbjct: 268 VPTMKELGL---KLATSTHRGGETLALEALEKIIANEEYTATFEKPKTAPTAFEPQATTL 324
Query: 100 LSPYLKFGCLSVRLFYHELKKILA--TGPHAKPPVSLLGQIYWREFYYVVGSDTP-NFDK 156
LSP+L FG LS R FY ++ ++ G ++PP SL GQ+ +R+ Y+ + +F +
Sbjct: 325 LSPHLHFGSLSCREFYWRVQDVVDRFKGKASQPPTSLTGQLLFRDMYFGAQAALGYSFSQ 384
Query: 157 MKGNKICCQVDWD-----------TNEKYL----------EAWSHGKTGYPFIDAIMRQL 195
N C + W T +YL + W G TG+P+IDA+MRQL
Sbjct: 385 TYNNPQCRFIPWHLPSKIDIKSSMTTGEYLVDDAEAEIHFKRWKEGCTGFPWIDALMRQL 444
Query: 196 RLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH 255
+ EGWIHHL RHAVACFLTRG Y+ WE G VFEE L+D + A N GNW WLS +AFF
Sbjct: 445 KREGWIHHLGRHAVACFLTRGGCYIDWERGAEVFEEWLIDHEAACNIGNWQWLSCTAFFA 504
Query: 256 QFFRVYSPVAFGKKTDK 272
QFFR YSP+AF +K DK
Sbjct: 505 QFFRCYSPIAFPQKWDK 521
>gi|45643659|gb|AAS72905.1| cryptochrome 2 variant 2 [Passer domesticus]
Length = 361
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 146/224 (65%), Gaps = 5/224 (2%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK P + C+ + H D + VP+++E+G +
Sbjct: 138 LTYKRFQAIISRMELPKKPVSTVISQQMETCKVDIQENHDDVYGVPSLEELGFPTDGLAP 197
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 198 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 257
Query: 117 ELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L ++ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L
Sbjct: 258 RLWELYKKVKRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPWDRNPEAL 317
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLY 219
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL+
Sbjct: 318 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLW 361
>gi|388582367|gb|EIM22672.1| hypothetical protein WALSEDRAFT_53945 [Wallemia sebi CBS 633.66]
Length = 554
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 116/255 (45%), Positives = 157/255 (61%), Gaps = 25/255 (9%)
Query: 42 PTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTVL 100
PT++E+G D + PGGE EAL+RL+K + +++ F KP T+P +P +TT L
Sbjct: 222 PTLEELGYDVKEA-TTQIPGGEDEALRRLDKWIQDEDATATFRKPQTSPAEYDPPATTQL 280
Query: 101 SPYLKFGCLSVRLFYHELKKILAT--GPHAKPPVSLLGQIYWREFYYVVG-SDTPNFDKM 157
SPY+KFG L VR FY ++ ++ G + P +L GQ+ +RE Y+ + F ++
Sbjct: 281 SPYIKFGALGVREFYWKVVDLMDQYDGETSSEPENLPGQLIFREMYFAAQLAIGKPFGQI 340
Query: 158 KGNKICCQVDW------DTN--------------EKYLEAWSHGKTGYPFIDAIMRQLRL 197
+GNKIC +DW D N E+ L+ W+ G TG+P+IDA MRQL+
Sbjct: 341 RGNKICRLIDWKLCNVYDENGEQIIPRPKGPKEDEEALQKWADGFTGFPWIDAAMRQLKQ 400
Query: 198 EGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQF 257
EGW+HHLARH+VACFLTRG LY+SWE G VF+ L+D D A NAGNWMWLS S FFHQ+
Sbjct: 401 EGWMHHLARHSVACFLTRGQLYISWERGAEVFDRYLVDRDPASNAGNWMWLSCSCFFHQY 460
Query: 258 FRVYSPVAFGKKTDK 272
+R Y F K DK
Sbjct: 461 YRNYGTTTFPAKYDK 475
>gi|156752078|gb|ABU93791.1| cryptochrome 2 [Carassius auratus]
Length = 164
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 95/144 (65%), Positives = 115/144 (79%)
Query: 128 AKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPF 187
+ PP+SL GQ+ WREF+Y + P FDKM+GN IC ++ WD N + L W+ KTG+P+
Sbjct: 3 STPPLSLYGQLLWREFFYTAATTNPRFDKMEGNPICVRIPWDKNPEALAKWAEAKTGFPW 62
Query: 188 IDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMW 247
IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW++NAG+WMW
Sbjct: 63 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMW 122
Query: 248 LSASAFFHQFFRVYSPVAFGKKTD 271
LS S+FF QFF Y PV FG++TD
Sbjct: 123 LSCSSFFQQFFHCYCPVGFGRRTD 146
>gi|156383457|ref|XP_001632850.1| predicted protein [Nematostella vectensis]
gi|156219912|gb|EDO40787.1| predicted protein [Nematostella vectensis]
Length = 492
Score = 217 bits (552), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 116/277 (41%), Positives = 159/277 (57%), Gaps = 10/277 (3%)
Query: 1 MTYQKLVSVLESLPKP-KPADDAPTSLPREC---QGILHPDEHLVPTMKEMGLDESSIPL 56
MT+ ++ E L P P ++ C G+ H +++ VP + + G E
Sbjct: 147 MTFDEMAKTAEQLGPPCPPCQTVDKTVFGACITPVGLDHAEKYGVPQLSDFGGKELGRAT 206
Query: 57 CKF--PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
K GGE EA++RL +L K KF KP + ++L S LSPY++FGCLS
Sbjct: 207 AKLFWKGGELEAMRRLNLALQKK----KFIKPPLSADTLLASDRALSPYMRFGCLSPCYI 262
Query: 115 YHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKY 174
L +KPP +L + WREF++ S P+ +M GN + Q+ W+ + +
Sbjct: 263 LDRLTTEYQRTMGSKPPETLYTNLLWREFFFATASTNPDHHRMMGNPLALQIPWEQHPEA 322
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
L W GKTG+P+IDAIMRQLR EGWIHHLAR AV CFLTRG L++SWEEG F+EL L
Sbjct: 323 LSLWKQGKTGFPWIDAIMRQLREEGWIHHLARQAVGCFLTRGCLWVSWEEGFKAFDELQL 382
Query: 235 DADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DA+W++NAGNW+WLS S++ H Y PV GK+ D
Sbjct: 383 DAEWSLNAGNWLWLSCSSYVHGAVPWYCPVEVGKQVD 419
>gi|342883710|gb|EGU84160.1| hypothetical protein FOXB_05337 [Fusarium oxysporum Fo5176]
Length = 637
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 118/261 (45%), Positives = 158/261 (60%), Gaps = 28/261 (10%)
Query: 37 DEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP- 95
D+ + TM+E+G ++ P GGET ALK L K +A+K++ F+KP T P EP
Sbjct: 218 DDFAIETMEELGFPPATTP---HRGGETRALKELNKLIADKKYTATFQKPKTNPAQFEPQ 274
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILAT-GPHAK-PPVSLLGQIYWREFYYVVGSDTPN 153
+TT+LSP+L FG LSVRLFY +++I+ + G A PP SL+GQ+ +R+ Y+ +
Sbjct: 275 ATTLLSPFLHFGALSVRLFYWRVREIVDSYGKGASTPPESLIGQLLFRDMYFAAQAALGY 334
Query: 154 FDKMKGNKICCQ----------------------VDWDTNEKYLEAWSHGKTGYPFIDAI 191
N C+ +D + E + W G TG+P+IDA+
Sbjct: 335 VFSQTANNPYCRFIPWHLPSKRDSETGLITGEYHIDSEEAEIWFRRWRVGMTGFPWIDAL 394
Query: 192 MRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS 251
MRQL+ EGWIHHL RHAVACFLTRG Y+ WE G VFEE L+D + A NAGNW WLS +
Sbjct: 395 MRQLKDEGWIHHLGRHAVACFLTRGGCYIDWERGCEVFEEWLIDHEPACNAGNWQWLSCT 454
Query: 252 AFFHQFFRVYSPVAFGKKTDK 272
AFF Q+FR YSP+AFG+K DK
Sbjct: 455 AFFSQYFRCYSPIAFGQKWDK 475
>gi|310791567|gb|EFQ27094.1| DNA photolyase [Glomerella graminicola M1.001]
Length = 628
Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 122/257 (47%), Positives = 161/257 (62%), Gaps = 28/257 (10%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTV 99
+ TM+E+G +S P GGET AL LE+ LA+K++ FEKP T+P + EP STT
Sbjct: 223 IETMEELGFPPASTP---HRGGETRALGMLEEILADKKYTATFEKPKTSPAAFEPQSTTF 279
Query: 100 LSPYLKFGCLSVRLFYHELKKIL-ATGPHA-KPPVSLLGQIYWREFYYVVGSDTP-NFDK 156
+SP+L FG LSVR FY ++ ++ A G A K P SLLGQ+ +R+ Y+ + +F +
Sbjct: 280 MSPFLHFGALSVREFYWRVRAVVDAYGKGASKVPESLLGQLLFRDMYFAAHAALGYSFTQ 339
Query: 157 MKGNKICCQVDWD------------TNEKYLEA---------WSHGKTGYPFIDAIMRQL 195
N C + W T E ++++ W +G TG+P+IDA+MRQL
Sbjct: 340 TANNPYCRFIPWHLPSKVDAKTGLVTGEYHVDSTQADEWFRRWKYGVTGFPWIDALMRQL 399
Query: 196 RLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH 255
R EGWIHHL RH+VACFLTRG Y+ WE G VFEE LLD + A NAGNW WLS +AFF
Sbjct: 400 REEGWIHHLGRHSVACFLTRGGCYIDWERGCEVFEEWLLDHEPACNAGNWQWLSCTAFFS 459
Query: 256 QFFRVYSPVAFGKKTDK 272
Q+FR YSPV+FG+K DK
Sbjct: 460 QYFRCYSPVSFGQKWDK 476
>gi|343429136|emb|CBQ72710.1| related to Deoxyribodipyrimidine photolyase [Sporisorium reilianum
SRZ2]
Length = 684
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/266 (44%), Positives = 161/266 (60%), Gaps = 33/266 (12%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAP--NSLEPSTT 98
VPT+ +G+D S + GGE AL++L K + E+V F KP T+P ++ +PSTT
Sbjct: 250 VPTLASLGMDASKV-RDTIKGGEPLALEKLAKICKDAEYVATFAKPKTSPGDSAEDPSTT 308
Query: 99 VLSPYLKFGCLSVRLFY---HELKKILATGPHAKPPVSLLGQIYWREFY----YVVGSDT 151
++SPYLKFGCLSVR F+ E KK G PP +L GQ+ +R+ Y + +G D
Sbjct: 309 LMSPYLKFGCLSVRKFWWDVEEAKKKYKGGSKTGPPENLNGQLLFRDMYACAEHAIGDD- 367
Query: 152 PNFDKMKGNKICCQVDW------DTN--------------EKYLEAWSHGKTGYPFIDAI 191
F +++GN++C +DW D N E L A+ G+TG+P+IDA+
Sbjct: 368 --FQRVRGNEVCRYMDWYLPTQYDKNGEVIVPRPAGDAVSEARLSAYKLGQTGFPWIDAL 425
Query: 192 MRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS 251
MRQLRLEGW+HHL RH+VA FLTRG ++SWE G +F+E L+D D N GNWMWLS S
Sbjct: 426 MRQLRLEGWMHHLGRHSVAAFLTRGQCWISWERGAEIFDEYLIDWDPCSNPGNWMWLSCS 485
Query: 252 AFFHQFFRVYSPVAFGKKTDKFELLL 277
AFF Q+FR+Y F K DK L+
Sbjct: 486 AFFTQYFRLYGLATFPAKYDKTGALV 511
>gi|400602563|gb|EJP70165.1| DNA photolyase [Beauveria bassiana ARSEF 2860]
Length = 623
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/257 (46%), Positives = 156/257 (60%), Gaps = 28/257 (10%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTV 99
+ TM+E+G ++ P GGET ALK L+ +K++ FEKP T+P EP STT+
Sbjct: 222 IETMEELGFPSATTP---HRGGETRALKMLDDIAKDKKYTATFEKPKTSPAQFEPQSTTL 278
Query: 100 LSPYLKFGCLSVRLFYHELKKIL-ATGPHAK-PPVSLLGQIYWREFYYVV-GSDTPNFDK 156
LSP+L FG LSVR Y ++ I+ A G A PP SL GQ+ +R+ Y+ + P+F +
Sbjct: 279 LSPFLHFGALSVRELYWRVQDIVTAYGKGASSPPASLTGQLLFRDMYFAAQAAIGPSFTQ 338
Query: 157 MKGNKIC---------------------CQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQL 195
GN C +VD E++ W G TG+P+IDA+MRQL
Sbjct: 339 TNGNGHCKFIPWHLPSKVDLATGISTGEYRVDSPEAEQWFARWKAGMTGFPWIDALMRQL 398
Query: 196 RLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH 255
R +GWIHHL RH+VACFLTRG Y+ WE G VFEE LLD + A NAGNW WLS +AFF
Sbjct: 399 RHDGWIHHLGRHSVACFLTRGGCYVDWERGAQVFEEYLLDHEPACNAGNWQWLSCTAFFS 458
Query: 256 QFFRVYSPVAFGKKTDK 272
Q+FR+YSPV+F +K DK
Sbjct: 459 QYFRMYSPVSFPQKWDK 475
>gi|170878123|gb|ACB38886.1| putative 6-4 photolyase [Cercospora zeae-maydis]
Length = 691
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 119/281 (42%), Positives = 162/281 (57%), Gaps = 53/281 (18%)
Query: 42 PTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL- 100
PT++E+G+ ++ P GGE+ L+RLE+ ++++ F+KP T+P + EP +T L
Sbjct: 224 PTLEELGMPAATSP---HKGGESVVLERLEEMFKDEDYTGTFQKPKTSPAAFEPQSTFLT 280
Query: 101 SPYLKFGCLSVRLFYHELKKILAT-----GPHAKPPVSLLGQIYWREFYYVVGSDTP-NF 154
SPYL FG LS R FYH + +I+A P + PP SL GQ+ +R+ Y+ + F
Sbjct: 281 SPYLHFGALSCRYFYHRVAEIVAKRNKEKKPTSSPPESLAGQLLFRDMYFAAQAALGWQF 340
Query: 155 DKMKGNKIC---------------------CQVDWDTNEKYLEAWSHGKTGYPFIDA--- 190
+ GN C ++D + E +L+ W+HG TG+P+ID+
Sbjct: 341 GQTLGNSHCRFIPWHLPSKVDMSSKRITGAHEIDSEETELWLQRWTHGITGFPWIDSEET 400
Query: 191 -------------------IMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
IMRQLR EGWIHHLARH+VACFLTRG Y+SWE G VFEE
Sbjct: 401 ELWLQRWTHGTTGFPWIDVIMRQLRHEGWIHHLARHSVACFLTRGGCYISWERGLEVFEE 460
Query: 232 LLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
LL+D + A N GNW WLS +AFF QF+R YSPVAFGKK D+
Sbjct: 461 LLIDHESACNIGNWQWLSCTAFFAQFYRCYSPVAFGKKWDE 501
>gi|408391364|gb|EKJ70743.1| hypothetical protein FPSE_09113 [Fusarium pseudograminearum CS3096]
Length = 637
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 117/256 (45%), Positives = 156/256 (60%), Gaps = 27/256 (10%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTV 99
+ TM+E+G ++ P GGET ALK L++ +A+K++ F+KP T+P EP +TT+
Sbjct: 222 IETMEELGFPPAATP---HRGGETLALKALDEIIADKKYTATFQKPKTSPAQFEPQATTL 278
Query: 100 LSPYLKFGCLSVRLFYHELKKILATGPHAK-PPVSLLGQIYWREFYYVVGSDTPNFDKMK 158
LSP+L FG LSVR FY +K ++ + A PP SL+GQ+ +R+ Y+ +
Sbjct: 279 LSPHLHFGSLSVREFYWRVKDVVDSYKGASSPPESLIGQLLFRDMYFAAQAALGYVFSQT 338
Query: 159 GNKICCQ----------------------VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLR 196
N C+ VD + E + + W G TG+P+IDA+MRQL+
Sbjct: 339 ANNPYCRFIPWHLPSKRDPETGLVTGEYHVDSEEAEIWFKRWRAGMTGFPWIDALMRQLK 398
Query: 197 LEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ 256
EGWIHHL RHAVACFLTRG Y+ WE G VFEE L+D + A NAGNW WLS SAFF Q
Sbjct: 399 DEGWIHHLGRHAVACFLTRGGCYIDWERGCEVFEEWLIDHEPACNAGNWQWLSCSAFFSQ 458
Query: 257 FFRVYSPVAFGKKTDK 272
+FR YSPVAFG+K DK
Sbjct: 459 YFRCYSPVAFGQKWDK 474
>gi|322698418|gb|EFY90188.1| cryptochrome-2 [Metarhizium acridum CQMa 102]
Length = 604
Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 117/257 (45%), Positives = 156/257 (60%), Gaps = 28/257 (10%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTV 99
+ T++E+G ++ P + GGE+ ALK L + + NK++ FEKP T+P EP STT+
Sbjct: 213 IETLEELGFPAATTP---YRGGESIALKDLAEIIENKKYTATFEKPKTSPAQFEPQSTTL 269
Query: 100 LSPYLKFGCLSVRLFYHELKKIL-ATGPHAK-PPVSLLGQIYWREFYYVVGSDT-PNFDK 156
LSP+L FG LSVR FY ++ ++ A G A PP SL GQ+ +R+ Y+ + F +
Sbjct: 270 LSPFLHFGALSVREFYWRVQDVVEAYGKGASTPPASLTGQLIFRDMYFAAQAAVGAKFTQ 329
Query: 157 MKGNKIC---------------------CQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQL 195
GN C +VD D EK+ + W G TG+P+IDA+MRQL
Sbjct: 330 TAGNPYCRFIPWHLPSERDSQTGLVTDKYKVDSDDAEKWFQRWKRGVTGFPWIDALMRQL 389
Query: 196 RLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH 255
GW+HHL RH+VACFLTRG Y+ WE G VFE LLD + A NAGNW WLS +AFF
Sbjct: 390 VHTGWMHHLGRHSVACFLTRGGCYVDWERGAEVFEVHLLDHEPACNAGNWQWLSCTAFFS 449
Query: 256 QFFRVYSPVAFGKKTDK 272
Q+FR YSPV+FG+K DK
Sbjct: 450 QYFRCYSPVSFGQKWDK 466
>gi|302915963|ref|XP_003051792.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732731|gb|EEU46079.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 639
Score = 213 bits (543), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 120/257 (46%), Positives = 162/257 (63%), Gaps = 28/257 (10%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTV 99
+ TM+E+G ++ P GGET AL+ L+K +A+K++ KFEKP T+P EP STT+
Sbjct: 222 IETMEELGFPSATTP---HRGGETLALEALDKIIADKKYTAKFEKPKTSPARFEPQSTTL 278
Query: 100 LSPYLKFGCLSVRLFYHELKKIL-ATGPHAK-PPVSLLGQIYWREFYYVVGSDTPN-FDK 156
LSP+L FG LSVR FY +++++ A G A PP SL+GQ+ +R+ Y+ + + F +
Sbjct: 279 LSPFLHFGALSVREFYWRVQEVVDAYGKGASTPPESLIGQLLFRDMYFAAQAALGDVFMQ 338
Query: 157 MKGNKICCQVDW-------------------DTNEK--YLEAWSHGKTGYPFIDAIMRQL 195
N C + W D+ E + + W G TG+P+IDA+MRQL
Sbjct: 339 TVKNPHCRFIPWHLPSKRDPKTGLVTGEYHVDSEEADIWFKRWKTGMTGFPWIDALMRQL 398
Query: 196 RLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH 255
+ EGWIHHL RHAVACFLTRG Y+ WE G VFEE L+D + A NAGNW WLS +AFF
Sbjct: 399 KEEGWIHHLGRHAVACFLTRGGCYIDWERGCEVFEEWLIDHEPACNAGNWQWLSCTAFFS 458
Query: 256 QFFRVYSPVAFGKKTDK 272
Q+FR YSPV+FG+K DK
Sbjct: 459 QYFRCYSPVSFGQKWDK 475
>gi|46560024|gb|AAT00492.1| cryptochrome 2 [Cebus apella]
Length = 166
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 97/166 (58%), Positives = 125/166 (75%), Gaps = 1/166 (0%)
Query: 82 KFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILA-TGPHAKPPVSLLGQIYW 140
+E+P NSL S T LSPYL+FGCLS RLFY+ L + ++ PP+SL GQ+ W
Sbjct: 1 NYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKVKRNSTPPLSLFGQLLW 60
Query: 141 REFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGW 200
REF+Y ++ P FD+M+GN IC Q+ WD N + L W+ GKTG+P+IDAIM QLR EGW
Sbjct: 61 REFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGW 120
Query: 201 IHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWM 246
IHHLARHAVACFLTRGDL++SWE G VF+++LLDAD+++NAG+WM
Sbjct: 121 IHHLARHAVACFLTRGDLWVSWESGVRVFDDVLLDADFSVNAGSWM 166
>gi|429854958|gb|ELA29939.1| DNA photolyase [Colletotrichum gloeosporioides Nara gc5]
Length = 445
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/265 (45%), Positives = 162/265 (61%), Gaps = 28/265 (10%)
Query: 33 ILHPD-EHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPN 91
I PD + + TM+E+G ++ P GGET+AL LE+ L +K++ FEKP T+P
Sbjct: 31 ISGPDGDFAIETMEELGFPSATTP---HRGGETKALAMLEEILKDKKYTATFEKPKTSPA 87
Query: 92 SLEP-STTVLSPYLKFGCLSVRLFYHELKK-ILATGPHAKPPVSLLGQIYWREFYYVVGS 149
+ EP STT+LSP+L FG LSVR FY K+ I AK P +LLGQ+ +R+ Y+ +
Sbjct: 88 AFEPQSTTLLSPFLHFGALSVREFYWRAKEGIDKYKGAAKIPENLLGQLLFRDMYFAAHA 147
Query: 150 DTP-NFDKMKGNKICCQVDW------DTN---------------EKYLEAWSHGKTGYPF 187
F + N C + W D+N +++ W +G TG+P+
Sbjct: 148 ALGYKFTQTANNPYCRFIPWHLPSKVDSNTGLITGEYHVDSKQADEWFRRWKYGLTGFPW 207
Query: 188 IDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMW 247
IDA+MRQ+R EGWIHHL RH+VACFLTRG Y+ WE G VFEE L+D + A NAGNW W
Sbjct: 208 IDALMRQMREEGWIHHLGRHSVACFLTRGGCYIDWERGCEVFEEWLIDHEPAANAGNWQW 267
Query: 248 LSASAFFHQFFRVYSPVAFGKKTDK 272
LS +AFF Q+FR YSPV+FG+K DK
Sbjct: 268 LSCTAFFSQYFRCYSPVSFGQKWDK 292
>gi|322707152|gb|EFY98731.1| cryptochrome-2 [Metarhizium anisopliae ARSEF 23]
gi|374257344|gb|AEZ01569.1| (6-4)PP photolyase [Metarhizium robertsii]
Length = 566
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 117/257 (45%), Positives = 153/257 (59%), Gaps = 28/257 (10%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTV 99
+ T++E+G ++ P + GGE+ ALK L NK++ FEKP T+P EP STT+
Sbjct: 174 IETLEELGFPAATTP---YRGGESIALKNLADIAKNKKYTATFEKPKTSPAQFEPQSTTL 230
Query: 100 LSPYLKFGCLSVRLFYHELKKIL-ATGPHAK-PPVSLLGQIYWREFYYVVGSDT-PNFDK 156
LSP+L FG LSVR FY ++ ++ A G A PP SL GQ+ +R+ Y+ + F +
Sbjct: 231 LSPFLHFGALSVREFYWRVQDVVEAYGKGASTPPASLTGQLIFRDMYFAAQAAVGAKFTQ 290
Query: 157 MKGNKIC---------------------CQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQL 195
GN C VD D EK+ + W G TG+P+IDA+MRQL
Sbjct: 291 TAGNPYCRFIPWHLPSERDSQTGLVTDKYTVDSDDAEKWFQRWKRGVTGFPWIDALMRQL 350
Query: 196 RLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH 255
GWIHHL RH++ACFLTRG Y+ WE G VFE LLD + A NAGNW WLS +AFF
Sbjct: 351 LHTGWIHHLGRHSLACFLTRGGCYVDWERGAEVFEVHLLDHEPACNAGNWQWLSCTAFFS 410
Query: 256 QFFRVYSPVAFGKKTDK 272
Q+FR YSPV+FG+K DK
Sbjct: 411 QYFRCYSPVSFGQKWDK 427
>gi|46124775|ref|XP_386941.1| hypothetical protein FG06765.1 [Gibberella zeae PH-1]
Length = 685
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/256 (44%), Positives = 155/256 (60%), Gaps = 27/256 (10%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTV 99
+ TM+E+G ++ P GGET ALK L++ +A+K++ F+KP T+P EP +TT+
Sbjct: 274 IETMEELGFPPATTP---HRGGETLALKALDEIIADKKYTATFQKPKTSPAQFEPQATTL 330
Query: 100 LSPYLKFGCLSVRLFYHELKKILATGPHAK-PPVSLLGQIYWREFYYVVGSDTPNFDKMK 158
LSP+L FG LSVR FY +K ++ + A PP SL+GQ+ +R+ Y+ +
Sbjct: 331 LSPHLHFGSLSVREFYWRVKDVVDSYKGASSPPESLIGQLLFRDMYFAAQAALGYVFSQT 390
Query: 159 GNKICCQ----------------------VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLR 196
N C+ VD + + + + W G TG+P+IDA+MRQL+
Sbjct: 391 ANNPYCRFIPWHLPSKRDPETGLVTGEYHVDSEEADIWFKRWKAGMTGFPWIDALMRQLK 450
Query: 197 LEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ 256
EGWIHHL RHAVACFLTRG Y+ WE G VFEE L+D + A N GNW WLS SAFF Q
Sbjct: 451 DEGWIHHLGRHAVACFLTRGGCYIDWERGCEVFEEWLIDHEPACNVGNWQWLSCSAFFSQ 510
Query: 257 FFRVYSPVAFGKKTDK 272
+FR YSPVAFG+K DK
Sbjct: 511 YFRCYSPVAFGQKWDK 526
>gi|45643655|gb|AAS72903.1| cryptochrome 4 [Passer domesticus]
Length = 359
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 142/226 (62%), Gaps = 12/226 (5%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGILHPDEHL-----VPTMKEMGLDESSI 54
+TY++ + +L L P+ P + + C+ PD L VP ++ + S
Sbjct: 139 LTYKRFLHILSLLGDPEVPVRNVTAEDFQRCRA---PDPGLAECYRVPLPVDLKISPES- 194
Query: 55 PLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
L + GGETE L+RLE+ L ++ WV F KP T PNSL PSTT LSPY GCLSVR F
Sbjct: 195 -LSPWRGGETEGLQRLERHLTDQGWVTSFTKPRTVPNSLLPSTTGLSPYFSMGCLSVRTF 253
Query: 115 YHELKKILATGPH-AKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEK 173
++ L I A H + PPVSL GQ+ WREF+Y V S TPNF +M GN IC Q+ W + +
Sbjct: 254 FYRLSNIYAQAKHHSLPPVSLQGQLLWREFFYTVASATPNFTQMAGNPICLQICWYKDAE 313
Query: 174 YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLY 219
L W +TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL+
Sbjct: 314 RLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLW 359
>gi|156383455|ref|XP_001632849.1| predicted protein [Nematostella vectensis]
gi|156219911|gb|EDO40786.1| predicted protein [Nematostella vectensis]
Length = 513
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 118/277 (42%), Positives = 158/277 (57%), Gaps = 7/277 (2%)
Query: 1 MTYQKLVSVLESLPKP-KPADDAPTSLPREC---QGILHPDEHLVPTMKEMGLDESSIPL 56
MT+ ++ E L P P ++ C G H D++ VP + E G+ E
Sbjct: 161 MTFDEMAKTAEQLGPPCPPCQTVDKTVFGACLTPVGPDHADKYGVPLLSEFGMKELKEAT 220
Query: 57 CK--FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
K + GGE EAL+RL +L K FE+ + + + LSPY++FGCLS RL+
Sbjct: 221 AKKYWTGGEPEALRRLSAAL-KKCAENDFEERGWTIDEMFSNDAHLSPYMRFGCLSPRLY 279
Query: 115 YHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKY 174
Y +L + PP +L + RE + V S + DKM N + Q W+ N++
Sbjct: 280 YQQLALTYMKEKKSIPPATLFTGLVRRELFLHVASHNADLDKMLDNPLSVQFPWEENKEG 339
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
LE W GKTG+P+IDAIMRQLR EGWIHHLAR AV CFLTRG L++SWEEG F+EL L
Sbjct: 340 LERWKEGKTGFPWIDAIMRQLREEGWIHHLARQAVGCFLTRGCLWVSWEEGFKAFDELQL 399
Query: 235 DADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DA+W++NA NW+WLS S++ H Y PV GKK D
Sbjct: 400 DAEWSLNASNWLWLSCSSYVHGAVPWYCPVEVGKKVD 436
>gi|405961052|gb|EKC26912.1| Cryptochrome-1 [Crassostrea gigas]
Length = 517
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 116/272 (42%), Positives = 166/272 (61%), Gaps = 19/272 (6%)
Query: 14 PKPKPADD---APTSLPRECQGILHPDEHLVPTMKEMGL----DESSIPLCKFPGGETEA 66
P P+P +D SLP H + +PT++++ + +E + L ++ GGE++A
Sbjct: 138 PPPRPVEDPDFTDISLPVSQN---HDKQFGIPTLEDLNVRPECEEQNKRLVEWLGGESKA 194
Query: 67 LKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTV----LSPYLKFGCLSVRLFYHEL-KKI 121
L+ L + ++E +E PN P LS +L+FGCLSVR FY + K
Sbjct: 195 LELLAIRMKHEE--TAYENGYVMPNQYHPDLLSPPLSLSAHLRFGCLSVRKFYWSIHDKF 252
Query: 122 LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
P PVSL Q+ WRE++Y + + N+DKM+ N IC + W N ++ E W+ G
Sbjct: 253 EEVKPSIGAPVSLSAQLMWREYFYTMAINNINYDKMETNPICLNIPWYDNPEHEEKWTKG 312
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
+TGYP+IDAIM+QLR EGW+HH+ARHAV+CFLTRGDL+L+WE G VF + LLDADW++
Sbjct: 313 ETGYPWIDAIMKQLRYEGWVHHVARHAVSCFLTRGDLWLNWEVGLKVFYKYLLDADWSVC 372
Query: 242 AGNWMWLSASAF--FHQFFRVYSPVAFGKKTD 271
AGNWMW+S+SAF Q + PV +GK+ D
Sbjct: 373 AGNWMWVSSSAFEKVLQCPNCFCPVRYGKRMD 404
>gi|443894766|dbj|GAC72113.1| deoxyribodipyrimidine photolyase [Pseudozyma antarctica T-34]
Length = 685
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 119/266 (44%), Positives = 160/266 (60%), Gaps = 33/266 (12%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAP--NSLEPSTT 98
VPT++ +G+D S GGE AL++L K + E+V F KP T+P ++ +PSTT
Sbjct: 250 VPTLESIGMDASKGKDT-IKGGEPLALEKLAKICKDAEYVATFAKPKTSPGQSAEDPSTT 308
Query: 99 VLSPYLKFGCLSVRLFY---HELKKILATGPHAKPPVSLLGQIYWREFY----YVVGSDT 151
+LSPYLKFGCLSVR + E KK G PP +L GQ+ +R+ Y + +G D
Sbjct: 309 LLSPYLKFGCLSVRKLWWDAEEAKKKYKGGSKTGPPENLNGQLLFRDMYACAEHAIGDD- 367
Query: 152 PNFDKMKGNKICCQVDW------DTN--------------EKYLEAWSHGKTGYPFIDAI 191
F +++GN++C +DW D N E L A+ G+TG+P+IDA+
Sbjct: 368 --FQRVRGNEVCRYMDWYLPTHYDKNGEVILPRPPGDAVSEARLSAFKLGQTGFPWIDAL 425
Query: 192 MRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS 251
MRQLRLEGW+HHL RH+VA FLTRG ++SWE G +F+E L+D D N GNWMWLS S
Sbjct: 426 MRQLRLEGWMHHLGRHSVAAFLTRGQCWISWERGAEIFDEYLIDWDPCSNPGNWMWLSCS 485
Query: 252 AFFHQFFRVYSPVAFGKKTDKFELLL 277
AFF Q+FR+Y F K DK L+
Sbjct: 486 AFFTQYFRLYGLATFPAKYDKTGALV 511
>gi|121705010|ref|XP_001270768.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1]
gi|119398914|gb|EAW09342.1| DNA photolyase, putative [Aspergillus clavatus NRRL 1]
Length = 613
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 123/291 (42%), Positives = 172/291 (59%), Gaps = 39/291 (13%)
Query: 17 KPADDAP--TSLPRECQGILHPDEHL-VPTMKEMGLDESSIPLCKFP--GGETEALKRLE 71
+P +AP TS + ++ P VPTM+E+G+D S L + P GGET AL+ L
Sbjct: 200 RPDLNAPYRTSSDVQYSALMGPGRDFAVPTMEEIGIDGS---LARSPHRGGETAALRVLA 256
Query: 72 KSLANKEWVRKFEKPNTAPNSLEP-STTVLSPYLKFGCLSVRLFYHELKKILAT-----G 125
+ + E+V FEKP T+P + EP +TT+LSP+L FG LSVR F+ +++ +L
Sbjct: 257 GYIQDGEYVGTFEKPKTSPAAFEPQATTLLSPHLHFGSLSVRKFWWDVQGVLQQRRKQKK 316
Query: 126 PHAKPPVSLLGQIYWREFYYVVGSDTPN-FDKMKGNKICCQVDWD--TN----------- 171
+A P +L GQ+ +R+ Y+ + + F + GNK +DW TN
Sbjct: 317 ANASIPTNLPGQLLFRDMYFAAQAAIGHAFGQTLGNKYVRFIDWHLPTNYITTEEGKYQP 376
Query: 172 -----------EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYL 220
E + W G+TG+P+IDA+MRQL+LEGWIHHL RH+VACFLTRG Y+
Sbjct: 377 DGTYTVDSSEAENWFRRWKEGRTGFPWIDALMRQLKLEGWIHHLGRHSVACFLTRGGCYV 436
Query: 221 SWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
SWE G VFE+ L+D + A N GNW WLS +AF+ Q++ YSP+AFGKK D
Sbjct: 437 SWERGAEVFEDWLVDHETACNVGNWQWLSCTAFYSQYYHCYSPIAFGKKWD 487
>gi|302417194|ref|XP_003006428.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102]
gi|261354030|gb|EEY16458.1| cryptochrome-1 [Verticillium albo-atrum VaMs.102]
Length = 626
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/262 (44%), Positives = 159/262 (60%), Gaps = 28/262 (10%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTV 99
+ TM+E+G ++ P GGE+ AL+ L++ + + ++ F KP T+P + EP STT+
Sbjct: 224 IETMEELGFPSATTP---HRGGESRALETLKEVMKDVKYAATFRKPQTSPAAFEPQSTTL 280
Query: 100 LSPYLKFGCLSVRLFY-HELKKILATGPHAK-PPVSLLGQIYWREFYYVVGSDTP-NFDK 156
LSP++ FG LSVR FY + + A G A PP SL GQ+ +R+ Y+ + F++
Sbjct: 281 LSPHMHFGSLSVREFYWQAVDAVKAFGKGASGPPESLTGQLLFRDMYFAAQAALGYKFEQ 340
Query: 157 MKGNKICCQVDW-------------------DTNEKYL--EAWSHGKTGYPFIDAIMRQL 195
+GN C + W D+ E L W G+TG+P+IDA+MRQL
Sbjct: 341 TRGNAYCRFIPWHLPSKVNTETGLITGQYHVDSEEADLWFRRWKAGQTGFPWIDALMRQL 400
Query: 196 RLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH 255
EGWIHHL RH+VACFLTRG Y+ WE G VFEE L+D + A NAGNW WLS +AFF
Sbjct: 401 AEEGWIHHLGRHSVACFLTRGGCYIDWERGCEVFEEWLIDHEPACNAGNWQWLSCAAFFS 460
Query: 256 QFFRVYSPVAFGKKTDKFELLL 277
Q+FR YSPV+FG+K DK LL+
Sbjct: 461 QYFRCYSPVSFGQKWDKEGLLI 482
>gi|134082999|emb|CAK42762.1| unnamed protein product [Aspergillus niger]
Length = 567
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/286 (41%), Positives = 170/286 (59%), Gaps = 20/286 (6%)
Query: 1 MTYQKLVSVLESLPK--PKPADDAPTSLP-----RECQGILHPDEHLVPTMKEMGLDESS 53
M+ ++ +E + P DAP +P + + I + +PT+ E+ +D S
Sbjct: 155 MSIHQVEKAIEQINNGVPDRPVDAPERIPDPLGEEKMRDISPKGDFSIPTLDELSIDPSQ 214
Query: 54 IPLCKFPGGETEALKRLEKSLA-NKEWVRKFEKPNTAPNSLEP-STTVLSPYLKFGCLSV 111
GGE+ AL+ L L N++++ FEKP T+P + P +TT+LSP+L FG LSV
Sbjct: 215 A-TSPHHGGESIALEMLTTYLQQNEDYIATFEKPKTSPAAFHPQATTLLSPHLHFGSLSV 273
Query: 112 RLFYHELKKIL-----ATGPHAKPPVSLLGQIYWREFYYVVGSD-TPNFDKMKGNKICCQ 165
R F+H+++ L A P + P +L GQ+ +RE ++ + P + + +GNKI
Sbjct: 274 RKFWHDVQDTLQQRESAHKPTSDLPTNLPGQLLFREMFFAAQAALGPVYAQTRGNKIVRF 333
Query: 166 VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEG 225
E + W G+TG+P+IDA+MRQL+ EGWIHHL RH+VACFLTRG Y+ WE G
Sbjct: 334 ----QAEVWFRRWKEGRTGFPWIDALMRQLKNEGWIHHLGRHSVACFLTRGGCYVHWERG 389
Query: 226 QSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
VFEE L+D + A N GNWMWLS +AFF Q+ R YSPVAFGKK D
Sbjct: 390 AEVFEEWLIDHETASNVGNWMWLSCTAFFTQYNRCYSPVAFGKKWD 435
>gi|301097555|ref|XP_002897872.1| cryptochrome, putative [Phytophthora infestans T30-4]
gi|262106620|gb|EEY64672.1| cryptochrome, putative [Phytophthora infestans T30-4]
Length = 694
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 168/300 (56%), Gaps = 35/300 (11%)
Query: 5 KLVSVLESLPKPKPAD-DAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGE 63
KL S+LE + + P++ D + + + + + P + GL + P GGE
Sbjct: 285 KLFSLLEDVCQQNPSEADVIAGVAGDVKKT-ESELFVAPPLTAFGLTPPT-PHAPLIGGE 342
Query: 64 TEALKRLEKSLANKEWVRKFEKPNTAPNSLE-PSTTVLSPYLKFGCLSVRLFYHELKKIL 122
+ A+KRL+ ++ V +FEKP T+P S++ PSTT LS YL FGCLS R F++ + I
Sbjct: 343 SAAMKRLDDFCEDERRVGQFEKPKTSPVSIDGPSTTTLSAYLSFGCLSAREFFYRIMFIQ 402
Query: 123 ATGPHAKP----PVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDT-NEKY--- 174
PH +P V+L GQ+ WREF+Y T NFD + N C Q+DW NE Y
Sbjct: 403 LQYPH-RPGLPTQVTLEGQLMWREFFYCYMCGTRNFDSQELNPSCKQIDWRLLNEYYVSH 461
Query: 175 ----------------------LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
L+ W G+TG+P+IDA+MRQ+ EGW HH RHAVACF
Sbjct: 462 PEYDEQEPKKVTEADEKLAMRQLQCWKDGRTGFPWIDAVMRQINQEGWTHHAGRHAVACF 521
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
LTRG LY+SW G + F+E ++D DW +N GNW+W+SAS FF + R+ SP F ++ D+
Sbjct: 522 LTRGVLYISWLRGATYFQEKMIDLDWPINVGNWLWVSASCFFTNYRRMASPSTFPQRWDQ 581
>gi|358385715|gb|EHK23311.1| putative photolyase class 1 [Trichoderma virens Gv29-8]
Length = 627
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/262 (43%), Positives = 157/262 (59%), Gaps = 28/262 (10%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTV 99
+ T++E+G ++ P GGET ALK L++ L +K++ F+KP T+P P STT+
Sbjct: 222 IETLEELGFPPATTP---HRGGETRALKALDELLKDKKYTATFQKPKTSPAQFNPQSTTL 278
Query: 100 LSPYLKFGCLSVRLFYHELKKILATGPHA--KPPVSLLGQIYWREFYYVVGSD-TPNFDK 156
LSP+ FG LSVRLFY + I+ + A PP SL+GQ+ +R+ Y+ + +F +
Sbjct: 279 LSPFFHFGALSVRLFYWRVHAIVESYGKAASSPPESLIGQVLFRDMYFAAQAALGASFAQ 338
Query: 157 MKGNKICCQVDW--------DTN-------------EKYLEAWSHGKTGYPFIDAIMRQL 195
N C + W DT E + + W G TG+P+IDA+MRQL
Sbjct: 339 TAMNPYCRFIPWHLPSKRDPDTGLATGDHHIDNQQAETWFQRWKAGVTGFPWIDALMRQL 398
Query: 196 RLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH 255
R +GWIHHL RH+VACFLTRG Y+ WE G VFEE L+D + A N GNW WLS +AFF
Sbjct: 399 RHDGWIHHLGRHSVACFLTRGGCYVDWERGAEVFEEWLIDHEPACNIGNWQWLSCTAFFT 458
Query: 256 QFFRVYSPVAFGKKTDKFELLL 277
Q+FR YSPV+FG+K DK L+
Sbjct: 459 QYFRCYSPVSFGQKWDKDGALI 480
>gi|358394356|gb|EHK43749.1| DNA photolyase [Trichoderma atroviride IMI 206040]
Length = 625
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/258 (43%), Positives = 154/258 (59%), Gaps = 30/258 (11%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTV 99
+ T++E+G ++ P GGE+ ALK L+ + NK + FEKP T+P EP STT+
Sbjct: 222 IETLEELGFAPATTP---HRGGESIALKTLDGLIKNKRYTATFEKPKTSPAQFEPQSTTL 278
Query: 100 LSPYLKFGCLSVRLFY---HELKKILATGPHAKPPVSLLGQIYWREFYYVVGSD-TPNFD 155
LSP+ FG LSVRLFY HE+ + G + PP SL+GQ+ +R+ Y+ + +F
Sbjct: 279 LSPFFHFGALSVRLFYWRVHEVVESYGKGA-STPPASLIGQVLFRDMYFAAQAALGQSFA 337
Query: 156 KMKGNKICCQVDWD---------------------TNEKYLEAWSHGKTGYPFIDAIMRQ 194
+ N C + W E++ + W G TG+P+IDA+MRQ
Sbjct: 338 QTATNAYCRFIPWHLPSKRDPETGFATGDYHIDKPKAEEWFQRWKAGVTGFPWIDALMRQ 397
Query: 195 LRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFF 254
L+ EGWIHHL RH++ACFLTRG Y+ WE G VFEELL+D + A N GNW WL+ AFF
Sbjct: 398 LKQEGWIHHLGRHSLACFLTRGGCYVDWERGAEVFEELLIDHEPACNIGNWQWLACVAFF 457
Query: 255 HQFFRVYSPVAFGKKTDK 272
Q++R YSPV+FG+K DK
Sbjct: 458 AQYYRCYSPVSFGQKWDK 475
>gi|346975848|gb|EGY19300.1| cryptochrome-1 [Verticillium dahliae VdLs.17]
Length = 652
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 160/262 (61%), Gaps = 28/262 (10%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTV 99
+ TM+E+G ++ P GGE+ AL+ L++ + + ++ F KP T+P + EP STT+
Sbjct: 224 IETMEELGFPSATTP---HRGGESRALETLKEVMKDVKYAATFRKPQTSPAAFEPQSTTL 280
Query: 100 LSPYLKFGCLSVRLFY-HELKKILATGPHAK-PPVSLLGQIYWREFYYVVGSDTP-NFDK 156
LSP++ FG LSVR FY + + A G A PP SL GQ+ +R+ Y+ + F++
Sbjct: 281 LSPHMHFGSLSVREFYWQAVDAVKAFGKGASGPPESLTGQLLFRDMYFAAQAALGYKFEQ 340
Query: 157 MKGNKICCQVDWD------------TNEKYLEA---------WSHGKTGYPFIDAIMRQL 195
+GN C + W T E ++++ W G+TG+P+IDA+MRQL
Sbjct: 341 TRGNAYCRFIPWHLPSKVNTETGLITGEYHVDSEEADLWFRRWKAGQTGFPWIDALMRQL 400
Query: 196 RLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH 255
EGWIHHL RH+VACFLTRG Y+ WE G VFEE L+D + A NAGNW WLS +AFF
Sbjct: 401 AEEGWIHHLGRHSVACFLTRGGCYIDWERGCEVFEEWLIDHEPACNAGNWQWLSCAAFFS 460
Query: 256 QFFRVYSPVAFGKKTDKFELLL 277
Q+FR YSPV+FG+K DK L +
Sbjct: 461 QYFRCYSPVSFGQKWDKEGLFV 482
>gi|350633368|gb|EHA21733.1| Hypothetical protein ASPNIDRAFT_184343 [Aspergillus niger ATCC
1015]
Length = 640
Score = 207 bits (527), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 116/264 (43%), Positives = 158/264 (59%), Gaps = 30/264 (11%)
Query: 37 DEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLA-NKEWVRKFEKPNTAPNSLEP 95
D+ VPT+ E+ +D S GGE+ AL+ L L N++++ FEKP T+P + P
Sbjct: 229 DDFSVPTLDELSIDPSQA-TSPHHGGESIALEMLTTYLQQNEDFIATFEKPKTSPAAFHP 287
Query: 96 -STTVLSPYLKFGCLSVRLFYHELKKIL-----ATGPHAKPPVSLLGQIYWREFYYVVGS 149
+TT+LSP+L FG LSVR F+H+++ L A P + P +L GQ+ +RE ++ +
Sbjct: 288 QATTLLSPHLHFGSLSVRKFWHDVQDTLQQHESAHKPTSDLPTNLPGQLLFREMFFAAQA 347
Query: 150 D-TPNFDKMKGNKICCQVDW---------------------DTNEKYLEAWSHGKTGYPF 187
P + + +GNKI V W + E + W G+TG+P+
Sbjct: 348 ALGPVYAQTRGNKIVRFVPWHLQSNHDKETGLVDRTYTVDDEQAEVWFRRWKEGRTGFPW 407
Query: 188 IDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMW 247
IDA+MRQL+ EGWIHHL RH+VACFLTRG Y+ WE G VFEE L+D + A N GNWMW
Sbjct: 408 IDALMRQLKNEGWIHHLGRHSVACFLTRGGCYVHWERGAEVFEEWLIDHETASNVGNWMW 467
Query: 248 LSASAFFHQFFRVYSPVAFGKKTD 271
LS +AFF Q+ R YSPVAFGKK D
Sbjct: 468 LSCTAFFTQYNRCYSPVAFGKKWD 491
>gi|145881071|gb|ABP97099.1| cryptochrome CRY2 [Acropora millepora]
Length = 520
Score = 206 bits (525), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 117/272 (43%), Positives = 159/272 (58%), Gaps = 11/272 (4%)
Query: 8 SVLESLPKPKPADDAPTSLPRECQ---GILHPDEHLVPTMKEMGLDES-SIPLCK--FPG 61
SVL+ KP L C G H + VP + E+G S S +C + G
Sbjct: 171 SVLQKRQPEKPVPKVGRKLFGACVTPVGSDHQQCYGVPRLDEIGGKFSKSGSVCSELYKG 230
Query: 62 GETEALKRLEKSLANKEWVRK--FEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
GE+EALKR+E +L +W+ K F +P +SL S T LSPYL+ GCLS RL + +
Sbjct: 231 GESEALKRMETAL---QWMVKNDFTEPEITIHSLLXSATHLSPYLRCGCLSPRLLHQRIT 287
Query: 120 KILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
+ PP L ++ WREF++VVG P+ +M N I ++ W+ + +YLE W
Sbjct: 288 EEYIKSKGVSPPSELFVKLLWREFFFVVGGQIPDAHEMINNPISLEIPWEDSVEYLERWK 347
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
G TG+P+IDAIMRQLR EGWIH++AR AVA FLTRG L+++WEEG VF+E LDA+ +
Sbjct: 348 KGTTGFPWIDAIMRQLRTEGWIHNIARRAVASFLTRGCLWVNWEEGFKVFDEFQLDAERS 407
Query: 240 MNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+N GNW+W+S S F + PV GKK D
Sbjct: 408 LNVGNWLWVSTSTFVKGPVPWFCPVGVGKKID 439
>gi|443724902|gb|ELU12703.1| hypothetical protein CAPTEDRAFT_226189 [Capitella teleta]
Length = 564
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/222 (47%), Positives = 146/222 (65%), Gaps = 6/222 (2%)
Query: 55 PLCKFPGGETEALKRLEKSLANKEWVRK--FEKPNT-APNSLEPSTTVLSPYLKFGCLSV 111
P+ K+ GGE+ AL L+ L +E K F +PN P+ + P T LSP+L+FGCLSV
Sbjct: 231 PINKWIGGESRALDLLQGRLKLEENAFKGGFLQPNQYRPDLIGPPLT-LSPHLRFGCLSV 289
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R FY + I + P S+ Q+ WRE++Y++ N+ +M+ N IC Q+ W +
Sbjct: 290 RYFYWAIHDIYSEVREELAPQSITSQLIWREYFYIMSVKNRNYAQMENNPICLQIPWYRD 349
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ LE W GKTGYP+IDA M QLR EGWIHH+ RHAV+CFLTRGDL++ WE+G VF +
Sbjct: 350 DNQLERWEMGKTGYPWIDACMNQLRREGWIHHVGRHAVSCFLTRGDLWIHWEDGLKVFLK 409
Query: 232 LLLDADWAMNAGNWMWLSASAFFH--QFFRVYSPVAFGKKTD 271
LLDADW++ AGNWMW+S+SAF + Q + +SP+ +G + D
Sbjct: 410 YLLDADWSVCAGNWMWVSSSAFENCLQCPQCFSPIMYGMRMD 451
>gi|317036499|ref|XP_001397458.2| DNA photolyase [Aspergillus niger CBS 513.88]
Length = 641
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/260 (43%), Positives = 156/260 (60%), Gaps = 30/260 (11%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLA-NKEWVRKFEKPNTAPNSLEP-STT 98
+PT+ E+ +D S GGE+ AL+ L L N++++ FEKP T+P + P +TT
Sbjct: 233 IPTLDELSIDPSQA-TSPHHGGESIALEMLTTYLQQNEDYIATFEKPKTSPAAFHPQATT 291
Query: 99 VLSPYLKFGCLSVRLFYHELKKIL-----ATGPHAKPPVSLLGQIYWREFYYVVGSD-TP 152
+LSP+L FG LSVR F+H+++ L A P + P +L GQ+ +RE ++ + P
Sbjct: 292 LLSPHLHFGSLSVRKFWHDVQDTLQQRESAHKPTSDLPTNLPGQLLFREMFFAAQAALGP 351
Query: 153 NFDKMKGNKICCQVDW---------------------DTNEKYLEAWSHGKTGYPFIDAI 191
+ + +GNKI V W + E + W G+TG+P+IDA+
Sbjct: 352 VYAQTRGNKIVRFVPWHLQSNHDKETGLVDRTYTVDDEQAEVWFRRWKEGRTGFPWIDAL 411
Query: 192 MRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS 251
MRQL+ EGWIHHL RH+VACFLTRG Y+ WE G VFEE L+D + A N GNWMWLS +
Sbjct: 412 MRQLKNEGWIHHLGRHSVACFLTRGGCYVHWERGAEVFEEWLIDHETASNVGNWMWLSCT 471
Query: 252 AFFHQFFRVYSPVAFGKKTD 271
AFF Q+ R YSPVAFGKK D
Sbjct: 472 AFFTQYNRCYSPVAFGKKWD 491
>gi|71009567|ref|XP_758291.1| hypothetical protein UM02144.1 [Ustilago maydis 521]
gi|46098033|gb|EAK83266.1| hypothetical protein UM02144.1 [Ustilago maydis 521]
Length = 684
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 115/266 (43%), Positives = 156/266 (58%), Gaps = 33/266 (12%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAP--NSLEPSTT 98
PT+ +G+D S + GGE AL++L + ++V F KP T+P ++ +PSTT
Sbjct: 250 APTLASLGMDASKVKDT-IKGGEPIALEKLANICKDAKYVATFAKPKTSPGQSAEDPSTT 308
Query: 99 VLSPYLKFGCLSVRLFY---HELKKILATGPHAKPPVSLLGQIYWREFY----YVVGSDT 151
+LSPYLKFGCLSVR + E K G PP +L GQ+ +R+ Y Y +G
Sbjct: 309 LLSPYLKFGCLSVRKLWWDAEEAKNRYKGGSKTGPPENLNGQLLFRDMYACAEYAIGD-- 366
Query: 152 PNFDKMKGNKICCQVDW------DTN--------------EKYLEAWSHGKTGYPFIDAI 191
F +++GN++C +DW D N E L A+ G+TG+P+IDA+
Sbjct: 367 -AFGRVRGNEVCRYMDWYLPTHYDENGEVVLPRPAGDAVSEARLSAYKLGQTGFPWIDAL 425
Query: 192 MRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS 251
MRQLRLEGW+HHL RH+VA FLTRG ++SWE G +F+E L+D D N GNWMWLS S
Sbjct: 426 MRQLRLEGWMHHLGRHSVAAFLTRGQCWISWERGAEIFDEYLIDWDPCSNPGNWMWLSCS 485
Query: 252 AFFHQFFRVYSPVAFGKKTDKFELLL 277
AFF Q+FR+Y F K DK L+
Sbjct: 486 AFFTQYFRLYGLATFPAKYDKTGALV 511
>gi|345570555|gb|EGX53376.1| hypothetical protein AOL_s00006g242 [Arthrobotrys oligospora ATCC
24927]
Length = 637
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 114/266 (42%), Positives = 158/266 (59%), Gaps = 38/266 (14%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP-STTV 99
VPTM+E+ + ++ GGE AL+ LE + +KE+ F KP TAP + +P ST +
Sbjct: 225 VPTMEELKMTATT----PHRGGEKIALEVLENVIKDKEYTATFSKPETAPTAFQPASTCL 280
Query: 100 LSPYLKFGCLSVRLFYHELKKIL----ATGPHA-KPPVSLLGQIYWREFYYVVGSDT--- 151
LSP++ FG +S R FY ++ +++ +G A +PP SL GQ+++R+ Y+ +
Sbjct: 281 LSPHMHFGSISCRKFYWDVLEVVEEWEKSGKKATEPPCSLTGQLFFRDMYFAAQAGIGTC 340
Query: 152 ----------------------PNFDKMKGN---KICCQVDWDTNEKYLEAWSHGKTGYP 186
PN D K + K VD + E++ W G+TG+P
Sbjct: 341 FGQTLHNSKVRYIPWNLPSKHQPNPDDPKKSLSIKGTYHVDSEEAEEWFIRWREGRTGFP 400
Query: 187 FIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWM 246
+IDAIM QL+ EGWIHHLARHAVACFLTRG Y+ WE G VFEE LLD + + NAGNW
Sbjct: 401 WIDAIMIQLKTEGWIHHLARHAVACFLTRGGCYIDWERGAEVFEEWLLDHEISCNAGNWQ 460
Query: 247 WLSASAFFHQFFRVYSPVAFGKKTDK 272
WLS +AFF Q+ R+YSP+AF +KTDK
Sbjct: 461 WLSCTAFFSQYMRIYSPIAFPQKTDK 486
>gi|380479795|emb|CCF42805.1| DNA photolyase [Colletotrichum higginsianum]
Length = 461
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 123/268 (45%), Positives = 161/268 (60%), Gaps = 29/268 (10%)
Query: 31 QGILHPD-EHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTA 89
Q I P+ + + TM+E+G +S P GGET AL LE A++++ FEKP T+
Sbjct: 60 QRIAGPEGDFAIETMEELGFPPASTP---HRGGETRALAMLEAMAADEKYTATFEKPKTS 116
Query: 90 PNSLEP-STTVLSPYLKFGCLSVRLFYHELKKILAT-GPHA-KPPVSLLGQIYWREFYYV 146
P + EP STT LSP+L FG LSVR FY ++ ++A G A K P SL GQ+ +R+ Y+
Sbjct: 117 PAAFEPQSTTFLSPFLHFGALSVREFYWRVQGVVARYGKGASKVPESLTGQLLFRDMYFA 176
Query: 147 VGSDTPN-FDKMKGNKIC---------------------CQVDWDTNEKYLEAWSHGKTG 184
+ + F + N C VD + +++ W +G TG
Sbjct: 177 AHAALGHRFTQTANNPYCRFIPWHLPSKVDAETGLVTGEYHVDSEQADEWFRRWKYGMTG 236
Query: 185 YPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGN 244
+P+IDA+MRQLR EGWIHHL RHAVACFLTRG Y+ WE G VFEE LLD + A NAGN
Sbjct: 237 FPWIDALMRQLREEGWIHHLGRHAVACFLTRGGCYVDWERGCEVFEEWLLDHEPACNAGN 296
Query: 245 WMWLSASAFFHQFFRVYSPVAFGKKTDK 272
W WLS +AFF Q+FR YSPVAFG+K D+
Sbjct: 297 WQWLSCTAFFSQYFRCYSPVAFGQKWDR 324
>gi|390351006|ref|XP_786331.2| PREDICTED: cryptochrome-1-like [Strongylocentrotus purpuratus]
Length = 439
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 150/239 (62%), Gaps = 10/239 (4%)
Query: 41 VPTMKEMGLDESSIPLCK--FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP--- 95
+P+++ MG++ K + GGET AL+ + ++E F+ PN P
Sbjct: 190 LPSLEVMGVNMECTEQEKKVWKGGETRALELFRVRILHEE--EAFKGGYCLPNQYMPDLL 247
Query: 96 -STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
+ LS YL+FGCLSVR FY ++ + P L Q+ WRE++Y + +F
Sbjct: 248 GTPKSLSAYLRFGCLSVRRFYWKIHDTYSELKKEVSPSHLTAQVIWREYFYTMSVGNIHF 307
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
+KMK N IC ++W +++ L+AW+ G+TGYP+IDA M+QL+ EGWIH + RHA ACFLT
Sbjct: 308 NKMKENPICLNIEWKEDDEKLKAWTDGRTGYPWIDACMKQLKYEGWIHQVGRHATACFLT 367
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF--FHQFFRVYSPVAFGKKTD 271
RGDL++SWE+G VF++ LLDADW++ AGNWMW+S+SAF F Q + PV +G++ D
Sbjct: 368 RGDLWISWEDGLQVFDKYLLDADWSICAGNWMWISSSAFEKFLQCPNCFCPVRYGRRMD 426
>gi|257359518|gb|ACV53158.1| cryptochrome-like protein [Crassostrea gigas]
Length = 393
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/248 (43%), Positives = 154/248 (62%), Gaps = 17/248 (6%)
Query: 14 PKPKPADD---APTSLPRECQGILHPDEHLVPTMKEMGL----DESSIPLCKFPGGETEA 66
P P+P +D SLP H + +P+++++ + +E + L ++ GGE++A
Sbjct: 151 PPPRPVEDPDFTDISLPVSQN---HDKQFGIPSLEDLNVRPECEEQNKRLVEWLGGESKA 207
Query: 67 LKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTV----LSPYLKFGCLSVRLFYHEL-KKI 121
L+ L + ++E + +E PN P LS +L+FGCLSVR FY + K
Sbjct: 208 LELLAIRMKHEE--KAYENGYVMPNQYHPDLLSPPLSLSAHLRFGCLSVRKFYWSIHDKF 265
Query: 122 LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
P PVSL Q+ WRE++Y + + N+DKM+ N IC + W N ++ E W+ G
Sbjct: 266 EEVKPSMGAPVSLSAQLMWREYFYTMAINNINYDKMETNPICLNIPWYDNPEHEEKWTQG 325
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
+TGYP+IDAIM+QLR EGW+HH+ARHAV+CFLTRGDL+L+WE G VF + LLDADW++
Sbjct: 326 ETGYPWIDAIMKQLRYEGWVHHVARHAVSCFLTRGDLWLNWEVGLKVFYKYLLDADWSVC 385
Query: 242 AGNWMWLS 249
AGNWMWLS
Sbjct: 386 AGNWMWLS 393
>gi|375267550|emb|CCD28225.1| DNA photolyase, cryptochrome, partial [Plasmopara viticola]
Length = 259
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/207 (50%), Positives = 136/207 (65%), Gaps = 19/207 (9%)
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSL--EPSTTVLSPYLKFGCLSVRLFYHEL 118
GGE +AL+ L+ +++ V +FEKP T+P PSTTVLSPY+ +GCLS R FYH +
Sbjct: 53 GGEQKALETLDNYCKDEDRVARFEKPKTSPAQPPPNPSTTVLSPYMFYGCLSPRTFYHRV 112
Query: 119 KKILATGPH-AKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG--NKICCQ--VDWDTNEK 173
+ I ++PPVSL+GQ+ WR+FY+ G D P F G N + Q V D+ E+
Sbjct: 113 QDIQKRRKKGSQPPVSLIGQLLWRDFYHCHGHDNPYFXXXGGESNLLTSQLAVPXDSRER 172
Query: 174 ------------YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLS 221
EAW G+TG+P+IDAIM QL+ EGW+HHLARHAVACFLTRGDLY+S
Sbjct: 173 KGHERRDKLARSQFEAWRDGRTGFPWIDAIMIQLKEEGWMHHLARHAVACFLTRGDLYIS 232
Query: 222 WEEGQSVFEELLLDADWAMNAGNWMWL 248
W G VF+E L+D DW++NAGNW+WL
Sbjct: 233 WVRGLEVFQERLIDHDWSVNAGNWLWL 259
>gi|444511893|gb|ELV09967.1| Cryptochrome-1 [Tupaia chinensis]
Length = 463
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 85/126 (67%), Positives = 103/126 (81%)
Query: 146 VVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLA 205
+ ++ P FDKM+GN IC Q+ WD N + L W+ G+TG+P+IDAIM QLR EGWIHHLA
Sbjct: 198 LAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLA 257
Query: 206 RHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVA 265
RHAVACFLTRGDL++SWEEG VFEELLLDADW++NAG+WMWLS S+FF QFF Y PV
Sbjct: 258 RHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVG 317
Query: 266 FGKKTD 271
FG++TD
Sbjct: 318 FGRRTD 323
>gi|378728105|gb|EHY54564.1| cryptochrome [Exophiala dermatitidis NIH/UT8656]
Length = 987
Score = 197 bits (500), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 126/344 (36%), Positives = 174/344 (50%), Gaps = 87/344 (25%)
Query: 10 LESLPKPKPADDAPTSLPRECQ--GILHPDEHL-VPTMKEMGLDES-------------- 52
LE+ P +DA ++C G++ P+ +PT++E+G++ES
Sbjct: 286 LETRPTSTAGEDA-----QDCSAVGLMGPNRAFSIPTLREIGIEESDSELEPEPDLAPAS 340
Query: 53 --------SIPLCKFP--------------GGETEALKRLEKSLANKEWVRKFEKPNTAP 90
S P +F GGET L L ++++ ++ FEKP TAP
Sbjct: 341 TKSTHCDTSRPNARFTVDPTSASARNLYRKGGETTGLALLAHHISDETYIATFEKPLTAP 400
Query: 91 NSLEP-STTVLSPYLKFGCLSVRLFYHELKKILATG-----------PHAKPPVSLLGQI 138
+ +P +TT+LSP++ FG +SVR F+ ++ +L P + PV+L GQ+
Sbjct: 401 TAFDPPATTMLSPHMHFGSVSVRRFWWAVQDVLEQRRRRSLENKISLPISPHPVNLPGQL 460
Query: 139 YWREFYYVV-GSDTPNFDKMKGNKICCQVDWDTN-------------------------- 171
+R+ Y+ + F + GN + V WD
Sbjct: 461 LFRDMYFAAYAAVGATFGQAVGNPVARFVPWDLQSEASGSSLATSDQLSGRDPTATYMVS 520
Query: 172 ----EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQS 227
E+Y W +G TG+P+IDA+MRQLR EGWIHHL RHAVA FLTRG Y+SWE G
Sbjct: 521 NPQAEEYFRRWKYGCTGFPWIDALMRQLRQEGWIHHLGRHAVASFLTRGGCYVSWERGAE 580
Query: 228 VFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
VFEE LLD + A NAGNWMWLS AFF QF RVYSPV+F KK D
Sbjct: 581 VFEEWLLDHEVACNAGNWMWLSCVAFFSQFHRVYSPVSFPKKWD 624
>gi|313212920|emb|CBY36823.1| unnamed protein product [Oikopleura dioica]
Length = 476
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/220 (46%), Positives = 137/220 (62%), Gaps = 9/220 (4%)
Query: 53 SIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVR 112
S+P+ + GGE +ALK L+ + N + N + P TT LS Y +GC+S R
Sbjct: 205 SLPI--YRGGERQALKVLQAKI-NDPTLFTLNGFNQGVKTKLPHTTYLSAYQNYGCISTR 261
Query: 113 LFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
F+ +K+ P +K + L GQI +REF+YV S NF KM GN+IC Q++W NE
Sbjct: 262 HFWKAAEKL----PESKT-IMLRGQIMYREFFYVAASQVNNFTKMAGNRICRQIEWYKNE 316
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
++L AW G+TGYP+IDA+MRQL EG+IHHL R AVA FLT G L+L+WE GQ +FEE
Sbjct: 317 EHLSAWQEGRTGYPYIDAVMRQLVTEGFIHHLNRWAVASFLTNGQLWLNWEHGQEMFEEH 376
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFF-RVYSPVAFGKKTD 271
+D D+AMNAG WMW + SAF + PV F ++ D
Sbjct: 377 QIDGDYAMNAGCWMWCTGSAFMDSISEKTLDPVKFARRWD 416
>gi|156752076|gb|ABU93790.1| cryptochrome 1 [Carassius auratus]
Length = 132
Score = 194 bits (492), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 85/125 (68%), Positives = 102/125 (81%)
Query: 147 VGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLAR 206
++ P FDKM+GN IC Q+ WD N + L W+ G+TG+P+IDAIM QLR EGWIHHLAR
Sbjct: 4 AATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLAR 63
Query: 207 HAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAF 266
HAVACFLTRGDL++SWEEG VFEELLLDADW++NAG+WMWLS S+FF QFF Y PV F
Sbjct: 64 HAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCSSFFQQFFHCYCPVGF 123
Query: 267 GKKTD 271
G++TD
Sbjct: 124 GRRTD 128
>gi|358368155|dbj|GAA84772.1| DNA photolyase [Aspergillus kawachii IFO 4308]
Length = 664
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/282 (40%), Positives = 154/282 (54%), Gaps = 52/282 (18%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLA-NKEWVRKFEKPNTAPNSLE-PSTT 98
+P ++E+ +D S GGE+ AL+ L L N+++V FEKP T+P + +TT
Sbjct: 234 IPKLEELSIDPSQA-TTPHHGGESIALEMLRTYLQQNEDFVATFEKPKTSPAAFHLQATT 292
Query: 99 VLSPYLKFGCLSVRLFYHELKKIL-----ATGPHAKPPVSLLGQIYWREFYYVVGSD-TP 152
+LSP+L FG LSVR F+H+++ L A P + P +L GQ+ +RE ++ + P
Sbjct: 293 LLSPHLHFGSLSVRKFWHDVQDTLHERESAHKPTSNLPTNLPGQLLFREMFFAAQAALGP 352
Query: 153 NFDKMKGNKICCQVDWDTNEKYLEA---------------------WSHGKTGYPFIDAI 191
+ + +GNKI + W Y E W G+TG+P+IDA+
Sbjct: 353 VYAQARGNKIARFIPWHLQSNYDEETGLVDRTYTIDDEQAEVWFRRWKEGRTGFPWIDAL 412
Query: 192 MRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA--------------- 236
MRQL+ EGWIHHL RH+VACFLTRG Y+ WE G VFEE L+D
Sbjct: 413 MRQLKYEGWIHHLGRHSVACFLTRGGCYVHWERGAEVFEEWLVDRISPILFSRSDFDSYD 472
Query: 237 -------DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+ A N GNW WLS +AFF QF+R YSPVAFGKK D
Sbjct: 473 TNNRVIDETASNVGNWSWLSCTAFFTQFYRCYSPVAFGKKWD 514
>gi|321466446|gb|EFX77441.1| CRY-D [Daphnia pulex]
Length = 525
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 112/272 (41%), Positives = 156/272 (57%), Gaps = 26/272 (9%)
Query: 1 MTYQKLVSVLESLPKP-KPADDAPTSLPRECQGI----LHPDEHL-------VPTMKEMG 48
+TY+ V V S+ P KP D E +G+ L P E VPT+ ++G
Sbjct: 145 LTYEMFVHVAMSVGDPPKPVADP------EWKGVKFLTLEPFESNRFTLFGGVPTLSQIG 198
Query: 49 LDESSIPLC--KFPGGETEALKRLEKSLANKEWVRK--FEKPNTA-PNSLEPSTTVLSPY 103
+ E+ + + GGET ALK L +E + F +PN A P+ L P + LS
Sbjct: 199 VPENPVGCRGRRIFGGETNALKHFAIRLQAEETAFRSGFYQPNQARPDLLGPPLS-LSAA 257
Query: 104 LKFGCLSVRLFYHELKKILATGPHAKPP--VSLLGQIYWREFYYVVGSDTPNFDKMKGNK 161
+ G +SVRLFY + +I PP + + GQI WR+++Y + P FDK N
Sbjct: 258 ISVGAISVRLFYWRIHEIFDKVNRGNPPAWLGITGQIIWRDYFYAMSRMNPKFDKEVDNP 317
Query: 162 ICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLS 221
IC Q+ W NE++ E W +G+TGYPFIDA MRQL EGW+HH R+AVA FLTRGDL+L+
Sbjct: 318 ICLQIPWVENEEFFEKWKNGQTGYPFIDAGMRQLNQEGWMHHSVRNAVAMFLTRGDLWLN 377
Query: 222 WEEGQSVFEELLLDADWAMNAGNWMWLSASAF 253
W+ G L+D+DW++N+GNWMW+S+SAF
Sbjct: 378 WDIGAEYMANQLVDSDWSVNSGNWMWVSSSAF 409
>gi|62001759|gb|AAX58599.1| cryptochrome [Danaus plexippus]
gi|357603254|gb|EHJ63675.1| cryptochrome [Danaus plexippus]
Length = 534
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 109/270 (40%), Positives = 156/270 (57%), Gaps = 21/270 (7%)
Query: 1 MTYQKLVSVLESLPKP-KPADDA----------PTSLPRECQGILHPDEHLVPTMKEMGL 49
+TYQ + +E + P +P DD P S RE + D+ P + L
Sbjct: 149 LTYQMFLHTVEIIGNPPRPVDDVDLNGVNFGSLPESFYRE---FVVFDKAPKPEDLGVFL 205
Query: 50 DESSIPLCKFPGGETEALKRLEKSLA--NKEWVRKFEKPNTA-PNSLEPSTTVLSPYLKF 106
+ I + ++ GGET ALK++++ LA + + R P P+ L P + LSP L+F
Sbjct: 206 ENEDIRMIRWVGGETAALKQMQERLAVEYETFCRGSYLPTHGNPDLLGPPIS-LSPALRF 264
Query: 107 GCLSVRLFYHELKKILATGPHAKPPVS--LLGQIYWREFYYVVGSDTPNFDKMKGNKICC 164
GCLSVR FY L+ + + + + GQ+ WRE++Y + + PN+ +M GN IC
Sbjct: 265 GCLSVRRFYWSLQDLFQQVHQGRLASTQFITGQLIWREYFYTMSVNNPNYAQMSGNPICL 324
Query: 165 QVDWDTNEK-YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWE 223
+ W E L+ W G+TG+PF+DA MRQLR EGW+HH+ R+ VA FLTRG L+LSWE
Sbjct: 325 DIPWKEPENDELQRWKEGRTGFPFVDAAMRQLRTEGWLHHVVRNTVASFLTRGTLWLSWE 384
Query: 224 EGQSVFEELLLDADWAMNAGNWMWLSASAF 253
G F + LLDADW++ AGNWMW+S+SAF
Sbjct: 385 HGLQHFLKYLLDADWSVCAGNWMWVSSSAF 414
>gi|289741509|gb|ADD19502.1| deoxyribodipyrimidine photolyase/cryptochrome [Glossina morsitans
morsitans]
Length = 536
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 118/297 (39%), Positives = 170/297 (57%), Gaps = 26/297 (8%)
Query: 1 MTYQKLVSVLE--SLPKPKPADDAP---TSLPRECQGILH--PDEHLVPTMKEMGL---D 50
+TYQ + ++ LP P+PA++A + + IL P +P ++ + D
Sbjct: 150 LTYQMFLHTVQVIGLP-PRPAENANWKGVDILNINETILEKLPGFTEIPQPEQFNVFAED 208
Query: 51 ESSIPLCKFPGGETEALKRLEKSLA--NKEWVRKFEKPNTA-PNSLEPSTTVLSPYLKFG 107
+ + L K+ GGETEAL LE+ L + + R + PN A PN LE + +SP+L+FG
Sbjct: 209 LNRLALVKWKGGETEALILLEERLKVEGEAFKRGYYLPNQANPNILETPKS-MSPHLRFG 267
Query: 108 CLSVRLFY---HEL-----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG 159
CLSVR FY H+L + + G + GQ+ WRE++Y + + P +D+M+
Sbjct: 268 CLSVRKFYWAVHDLFEDVQQHVKMFGFQIMSGAHITGQLIWREYFYTMSVNNPYYDRMEE 327
Query: 160 NKICCQVDWD-TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
N+IC + W N++ LE W GKTG+P +DA MRQL EGWIHH R+ VA FLTRG L
Sbjct: 328 NEICLNIPWAPVNDEQLENWKLGKTGFPLVDAAMRQLLAEGWIHHTLRNTVATFLTRGGL 387
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFR--VYSPVAFGKKTDKF 273
+ +WE G F + LLDADW++ AGNWMW+S+SAF V P+A K+ D F
Sbjct: 388 WFNWEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPLAMAKRLDPF 444
>gi|90085022|dbj|BAE91252.1| unnamed protein product [Macaca fascicularis]
Length = 278
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 81/115 (70%), Positives = 96/115 (83%)
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
M+GN IC Q+ WD N + L W+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRG
Sbjct: 1 MEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRG 60
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DL++SWEEG VFEELLLDADW++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 61 DLWISWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 115
>gi|124107288|dbj|BAF45421.1| cryptochrome precursor [Dianemobius nigrofasciatus]
Length = 539
Score = 186 bits (473), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 167/292 (57%), Gaps = 27/292 (9%)
Query: 1 MTYQKLVSVLESL-PKPKPADDAP-----------TSLPRECQGILHPDEHLVPTMKEMG 48
+T++ V + + P P+P +D +S+P + + + PT ++ G
Sbjct: 155 LTFEMFVHTVSVIGPPPRPVEDVEWSVVNFGVLPMSSIPSDIKVFKN-----FPTPEDFG 209
Query: 49 LDE---SSIPLCKFPGGETEALKRLEKSLANKE--WVRKFEKPNTA-PNSLEPSTTVLSP 102
+ + + ++ GGE++AL+ L++ L +E + + PN A P+ L P T+ S
Sbjct: 210 ISSEVGNMNRIIQWIGGESQALRHLQERLKVEENAFREGYCLPNQARPDLLGPPTS-QSA 268
Query: 103 YLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKI 162
L+FGCLSVR FY ++ + ++ P ++ Q+ WRE++Y + + +M N I
Sbjct: 269 ALRFGCLSVRKFYWSIQDMYSSICGPSPNQNITSQLIWREYFYTMSVGNEYYAEMDRNPI 328
Query: 163 CCQVDWDTN-EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLS 221
C + W + W GKTGYPFIDAIMRQL EGWIHH+AR+AVACFLTRGDL++S
Sbjct: 329 CLNIPWKNDYGSDFNKWKEGKTGYPFIDAIMRQLIQEGWIHHVARNAVACFLTRGDLWIS 388
Query: 222 WEEGQSVFEELLLDADWAMNAGNWMWLSASAF--FHQFFRVYSPVAFGKKTD 271
WEEG + F + LLDADW++ AGNWMW+S+SAF PV +G++ D
Sbjct: 389 WEEGLNFFLQYLLDADWSVCAGNWMWVSSSAFEQLLDCSHCMCPVNYGRRLD 440
>gi|307826658|gb|ADN94464.1| cryptochrome [Helicoverpa armigera]
Length = 548
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 165/291 (56%), Gaps = 22/291 (7%)
Query: 1 MTYQKLVSVLESL---PKPKPADDAPT----SLPREC--QGILHPDEHLVPTMKEMGLDE 51
+TYQ + + ++ P+P P D SLP EC Q D+ P + L+
Sbjct: 149 LTYQMFLHTVATIGDPPRPVPNIDFTGVKFGSLP-ECFYQEFTVYDKTPKPEDLGVFLEN 207
Query: 52 SSIPLCKFPGGETEALKRLEKSLA--NKEWVRKFEKPNTA-PNSLEPSTTVLSPYLKFGC 108
I + ++ GGET ALK++++ L+ + ++R P P+ L P + LSP L+FGC
Sbjct: 208 EDIRMIRWVGGETTALKQMQQRLSVEYETFLRGSYLPTHGNPDLLGPPIS-LSPALRFGC 266
Query: 109 LSVRLFYHELKKILATGPHAKPPVS-----LLGQIYWREFYYVVGSDTPNFDKMKGNKIC 163
LSVR FY ++ + + + + GQ+ WRE++Y + + PN+ +M GN IC
Sbjct: 267 LSVRSFYWAVQDLFRQVHQGRLTTNSASHFITGQLIWREYFYTMSVNNPNYGQMAGNPIC 326
Query: 164 CQVDWDTNE-KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSW 222
+ W E L+ W G+TG+PF+DA MRQLR EGW+HH AR+ VA FLTRG L+LSW
Sbjct: 327 LDIPWKNPEGDELQRWVEGRTGFPFVDAAMRQLRTEGWLHHAARNTVASFLTRGTLWLSW 386
Query: 223 EEGQSVFEELLLDADWAMNAGNWMWLSASAF--FHQFFRVYSPVAFGKKTD 271
E G + F + LLDADW++ AGNWMW+S+SAF PV G++ D
Sbjct: 387 EHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEALLDSGECACPVRLGQRLD 437
>gi|210136298|gb|ACJ08741.1| cryptochrome [Neobellieria bullata]
Length = 542
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/234 (44%), Positives = 144/234 (61%), Gaps = 27/234 (11%)
Query: 58 KFPGGETEALKRLEKSLANKEWVRK--FEKPNTA-PNSLEPSTTVLSPYLKFGCLSVRLF 114
K+ GGET+AL L++ L +E K + PN A PN LE S +S +L+FGCLSVR F
Sbjct: 219 KWIGGETQALLHLDQRLKVEESAFKCGYYLPNQAKPNILE-SPKSMSAHLRFGCLSVRKF 277
Query: 115 Y---HELKK-----------ILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGN 160
Y H+L K +++ G H + GQ+ WRE++Y + + PN+D+M+GN
Sbjct: 278 YWDVHDLFKDVQQQAECLGMLMSGGAH------ITGQLIWREYFYTMSVNNPNYDRMEGN 331
Query: 161 KICCQVDW-DTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLY 219
+IC + W +TN L+ W+ GKTG+P IDA MRQL EGW+HH R+ VA FLTRG L+
Sbjct: 332 EICLNIPWAETNHIQLQRWTQGKTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGGLW 391
Query: 220 LSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFR--VYSPVAFGKKTD 271
+WE G F + LLDADW++ AGNWMW+S+SAF V P+A K+ D
Sbjct: 392 QNWEHGLRYFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPIALAKRLD 445
>gi|371574660|gb|AEX49898.1| cryptochrome 1 [Helicoverpa armigera]
Length = 528
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 165/291 (56%), Gaps = 22/291 (7%)
Query: 1 MTYQKLVSVLESL---PKPKPADDAPT----SLPREC--QGILHPDEHLVPTMKEMGLDE 51
+TYQ + + ++ P+P P D SLP EC Q D+ P + L+
Sbjct: 149 LTYQMFLHTVATIGDPPRPVPNIDFTGVKFGSLP-ECFYQEFTVYDKTPKPEDLGVFLEN 207
Query: 52 SSIPLCKFPGGETEALKRLEKSLA--NKEWVRKFEKPNTA-PNSLEPSTTVLSPYLKFGC 108
I + ++ GGET ALK++++ L+ + ++R P P+ L P + LSP L+FGC
Sbjct: 208 EDIRMIRWVGGETTALKQMQQRLSVEYETFLRGSYLPTHGNPDLLGPPIS-LSPALRFGC 266
Query: 109 LSVRLFYHELKKILATGPHAKPPVS-----LLGQIYWREFYYVVGSDTPNFDKMKGNKIC 163
LSVR FY ++ + + + + GQ+ WRE++Y + + PN+ +M GN IC
Sbjct: 267 LSVRSFYWAVQDLFRQVHQGRLTTNSASHFITGQLIWREYFYTMSVNNPNYGQMAGNPIC 326
Query: 164 CQVDWDTNE-KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSW 222
+ W E L+ W G+TG+PF+DA MRQLR EGW+HH AR+ VA FLTRG L+LSW
Sbjct: 327 LDIPWKNPEGDELQRWVEGRTGFPFVDAAMRQLRTEGWLHHAARNTVASFLTRGTLWLSW 386
Query: 223 EEGQSVFEELLLDADWAMNAGNWMWLSASAF--FHQFFRVYSPVAFGKKTD 271
E G + F + LLDADW++ AGNWMW+S+SAF PV G++ D
Sbjct: 387 EHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEALLDSGECACPVRLGQRLD 437
>gi|62955979|gb|AAY23345.1| antennal cryptochrome [Mamestra brassicae]
Length = 548
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 105/244 (43%), Positives = 149/244 (61%), Gaps = 14/244 (5%)
Query: 41 VPTMKEMG--LDESSIPLCKFPGGETEALKRLEKSLA--NKEWVRKFEKPNTA-PNSLEP 95
P +++G L+ I + ++ GGET ALK++++ LA + ++R P P+ L P
Sbjct: 195 TPKPEDLGVFLENEDIRMIRWVGGETTALKQMQQRLAVEYETFLRGSYLPTHGNPDLLGP 254
Query: 96 STTVLSPYLKFGCLSVRLFY---HELKKILATGPHAKPPVS--LLGQIYWREFYYVVGSD 150
+ LSP L+FGCLSVR FY +L + + G A S + GQ+ WRE++Y + +
Sbjct: 255 PIS-LSPALRFGCLSVRSFYWSVQDLFRQVHQGRLATQSASHFITGQLIWREYFYTMSVN 313
Query: 151 TPNFDKMKGNKICCQVDWDTNE-KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAV 209
PN+ +M GN IC + W E L+ W G+TG+PF+DA MRQLR EGW+HH AR+ V
Sbjct: 314 NPNYGQMAGNPICLDIPWKEPEGDELQRWVEGRTGFPFVDAAMRQLRTEGWLHHAARNTV 373
Query: 210 ACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF--FHQFFRVYSPVAFG 267
A FLTRG L+LSWE G + F + LLDADW++ AGNWMW+S+SAF PV G
Sbjct: 374 ASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEALLDSGECACPVRLG 433
Query: 268 KKTD 271
++ D
Sbjct: 434 QRLD 437
>gi|404313303|gb|AFR54426.1| cryptochrome 1 [Mythimna separata]
Length = 528
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 104/244 (42%), Positives = 149/244 (61%), Gaps = 14/244 (5%)
Query: 41 VPTMKEMG--LDESSIPLCKFPGGETEALKRLEKSLA--NKEWVRKFEKPNTA-PNSLEP 95
P +++G L+ I + ++ GGET ALK++++ LA + ++R P P+ L P
Sbjct: 195 TPKPEDLGVFLENEDIRMIRWVGGETTALKQMQQRLAVEYETFLRGSYLPTHGNPDLLGP 254
Query: 96 STTVLSPYLKFGCLSVRLFY---HELKKILATGPHAKPPVS--LLGQIYWREFYYVVGSD 150
+ LSP L+FGCLSVR FY +L + + G A S + GQ+ WRE++Y + +
Sbjct: 255 PIS-LSPALRFGCLSVRSFYWALQDLFRQVHQGRLATQSASHVIAGQLIWREYFYTMSVN 313
Query: 151 TPNFDKMKGNKICCQVDW-DTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAV 209
PN+ +M GN IC + W + L+ W G+TG+PF+DA MRQLR EGW+HH AR+ V
Sbjct: 314 NPNYGQMAGNPICLDIPWKEPQGDELQRWVEGRTGFPFVDAAMRQLRTEGWLHHAARNTV 373
Query: 210 ACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF--FHQFFRVYSPVAFG 267
A FLTRG L+LSWE G + F + LLDADW++ AGNWMW+S+SAF PV G
Sbjct: 374 ASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEALLDSGECACPVRLG 433
Query: 268 KKTD 271
++ D
Sbjct: 434 QRLD 437
>gi|3986298|dbj|BAA35000.1| blue light photoreceptor [Drosophila melanogaster]
Length = 542
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 136/224 (60%), Gaps = 13/224 (5%)
Query: 61 GGETEALKRLEKSLANKE--WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY--- 115
GGET+AL L++ L ++ + R F PN A ++ S +S +L+FGCLSVR FY
Sbjct: 225 GGETQALHLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSV 284
Query: 116 HELKKIL-----ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDW-D 169
H+L K + G + GQ+ WRE++Y + + PN+D+M+GN+IC + W
Sbjct: 285 HDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPWAK 344
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
NE L++W G+TG+P ID MRQL EGW+HH R+ VA FLTRG L+ SWE G F
Sbjct: 345 PNEDLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHF 404
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFR--VYSPVAFGKKTD 271
+ LLDADW++ AGNWMW+S+SAF V PVA K+ D
Sbjct: 405 LKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLD 448
>gi|307611923|ref|NP_001182628.1| cryptochrome 1 [Bombyx mori]
gi|306416108|gb|ADM86932.1| cryptochrome 1 [Bombyx mori]
gi|306416112|gb|ADM86934.1| cryptochrome 1 [Bombyx mori]
Length = 536
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 149/242 (61%), Gaps = 13/242 (5%)
Query: 41 VPTMKEMG--LDESSIPLCKFPGGETEALKRLEKSLA--NKEWVRKFEKP-NTAPNSLEP 95
VP +++G L+ I + ++ GGET ALK+++ LA + + R P + +P+ L P
Sbjct: 195 VPNPEDLGVFLENEDIRMIRWVGGETAALKQMQHRLAVEYETFCRGSYLPTHGSPDLLGP 254
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVS---LLGQIYWREFYYVVGSDTP 152
+ LSP L+FGCLSVR FY L+ + H S + GQ+ WRE++Y + + P
Sbjct: 255 PIS-LSPALRFGCLSVRKFYWSLQDLFQQ-VHQGSLCSTQYITGQLIWREYFYTMSVNNP 312
Query: 153 NFDKMKGNKICCQVDWDTNE-KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVAC 211
++ +M N IC + W + E LE W+ G+TG+PF+DA MRQLRLEGW+HH R+ VA
Sbjct: 313 HYGQMTDNPICLDIPWKSPEGDELERWASGRTGFPFVDAAMRQLRLEGWLHHAVRNTVAS 372
Query: 212 FLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF--FHQFFRVYSPVAFGKK 269
FLTRG L+LSWE G + F + LLDADW++ AGNWMW+S+SAF PV G++
Sbjct: 373 FLTRGTLWLSWEHGLAHFLKYLLDADWSVCAGNWMWVSSSAFEALLDSGECACPVRLGQR 432
Query: 270 TD 271
D
Sbjct: 433 LD 434
>gi|24648152|ref|NP_732407.1| cryptochrome [Drosophila melanogaster]
gi|74960862|sp|O77059.1|CRY1_DROME RecName: Full=Cryptochrome-1; Short=DmCRY1; Short=dcry; AltName:
Full=Blue light photoreceptor
gi|3724370|dbj|BAA33787.1| blue-light receptor [Drosophila melanogaster]
gi|3983154|gb|AAC83828.1| cryptochrome [Drosophila melanogaster]
gi|7300494|gb|AAF55649.1| cryptochrome [Drosophila melanogaster]
gi|15291339|gb|AAK92938.1| GH16672p [Drosophila melanogaster]
gi|220945540|gb|ACL85313.1| cry-PA [synthetic construct]
gi|220955344|gb|ACL90215.1| cry-PA [synthetic construct]
Length = 542
Score = 183 bits (464), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 135/224 (60%), Gaps = 13/224 (5%)
Query: 61 GGETEALKRLEKSLANKE--WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY--- 115
GGET+AL L++ L ++ + R F PN A ++ S +S +L+FGCLSVR FY
Sbjct: 225 GGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSV 284
Query: 116 HELKKIL-----ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDW-D 169
H+L K + G + GQ+ WRE++Y + + PN+D+M+GN IC + W
Sbjct: 285 HDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAK 344
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
NE L++W G+TG+P ID MRQL EGW+HH R+ VA FLTRG L+ SWE G F
Sbjct: 345 PNENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHF 404
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFR--VYSPVAFGKKTD 271
+ LLDADW++ AGNWMW+S+SAF V PVA K+ D
Sbjct: 405 LKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLD 448
>gi|20336481|gb|AAM19303.1| cryptochrome-2 [Gallus gallus]
Length = 266
Score = 183 bits (464), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 80/116 (68%), Positives = 96/116 (82%)
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
+M+GN IC Q+ WD N + L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTR
Sbjct: 1 RMEGNPICIQIPWDKNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTR 60
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
GDL++SWE G VF+ELLLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 61 GDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 116
>gi|13022111|gb|AAK11644.1|AF333998_1 cryptochrome [Antheraea pernyi]
Length = 525
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 164/288 (56%), Gaps = 19/288 (6%)
Query: 1 MTYQKL---VSVLESLPKPKPADDAPT----SLPREC--QGILHPDEHLVPTMKEMGLDE 51
+TYQ V+++ P+P P D +LP +C Q D+ P + L+
Sbjct: 149 LTYQMFLHTVTIVGDPPRPVPDVDMSGITFGTLP-DCFYQEFTVFDKTPKPEDLGVFLEN 207
Query: 52 SSIPLCKFPGGETEALKRLEKSLA-NKEWVRK--FEKPNTAPNSLEPSTTVLSPYLKFGC 108
I + ++ GGET ALK++++ LA E RK + + +P+ L P + LSP L+FGC
Sbjct: 208 EDIRMIRWVGGETAALKQMQQRLAVEHETFRKGSYLPTHGSPDLLGPPIS-LSPALRFGC 266
Query: 109 LSVRLFYHELKKILATGPHAKPPVS--LLGQIYWREFYYVVGSDTPNFDKMKGNKICCQV 166
LSVR FY ++ + + + + GQ+ WRE++Y + + PN+ +M N IC +
Sbjct: 267 LSVRSFYWSVQDLFRQVHQGRLSSAHFITGQLIWREYFYTMSVNNPNYGQMADNPICLDI 326
Query: 167 DWDTNE-KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEG 225
W E L+ W G+TG+PFIDA MRQLR EGW+HH R+ VA FLTRG L+LSWE G
Sbjct: 327 PWKHPEGDELQRWIEGRTGFPFIDAAMRQLRAEGWLHHAVRNTVASFLTRGTLWLSWEHG 386
Query: 226 QSVFEELLLDADWAMNAGNWMWLSASAF--FHQFFRVYSPVAFGKKTD 271
+ F + LLDADW++ AGNWMW+S+SAF PV G++ D
Sbjct: 387 LNHFLKYLLDADWSVCAGNWMWVSSSAFEALLDSGECACPVRLGQRLD 434
>gi|406855882|pdb|4GU5|A Chain A, Structure Of Full-Length Drosophila Cryptochrome
gi|406855883|pdb|4GU5|B Chain B, Structure Of Full-Length Drosophila Cryptochrome
Length = 539
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 135/224 (60%), Gaps = 13/224 (5%)
Query: 61 GGETEALKRLEKSLANKE--WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY--- 115
GGET+AL L++ L ++ + R F PN A ++ S +S +L+FGCLSVR FY
Sbjct: 225 GGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSV 284
Query: 116 HELKKIL-----ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDW-D 169
H+L K + G + GQ+ WRE++Y + + PN+D+M+GN IC + W
Sbjct: 285 HDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAK 344
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
NE L++W G+TG+P ID MRQL EGW+HH R+ VA FLTRG L+ SWE G F
Sbjct: 345 PNENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHF 404
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFR--VYSPVAFGKKTD 271
+ LLDADW++ AGNWMW+S+SAF V PVA K+ D
Sbjct: 405 LKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLD 448
>gi|31322270|gb|AAP22941.1| cryptochrome 2 [Arvicanthis ansorgei]
Length = 139
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/119 (68%), Positives = 98/119 (82%)
Query: 153 NFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
FD+M+GN IC Q+ WD N + L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACF
Sbjct: 1 RFDRMEGNPICIQIPWDRNPEALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACF 60
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LTRGDL++SWE G VF+ELLLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 61 LTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 119
>gi|195353691|ref|XP_002043337.1| GM26830 [Drosophila sechellia]
gi|194127451|gb|EDW49494.1| GM26830 [Drosophila sechellia]
Length = 542
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 160/294 (54%), Gaps = 24/294 (8%)
Query: 1 MTYQKLVSVLE--SLPKPKPADDAPTSL-------PRECQGILHPDEHLVPT-MKEMGLD 50
+TYQ + ++ LP P+P DA P C+ + D+ P G +
Sbjct: 156 LTYQMFLHTVQIIGLP-PRPTADARLDDATFVELDPEFCRSLKLFDQLPTPEHFNVYGDN 214
Query: 51 ESSIPLCKFPGGETEALKRLEKSLANKE--WVRKFEKPNTAPNSLEPSTTVLSPYLKFGC 108
+ + GGET+AL L++ L ++ + R F PN A ++ S +S +L+FGC
Sbjct: 215 MGFLAKINWRGGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGC 274
Query: 109 LSVRLFY---HELKKIL-----ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGN 160
LSVR FY H+L K + G + GQ+ WRE++Y + + PN+D+M+GN
Sbjct: 275 LSVRRFYWSVHDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGN 334
Query: 161 KICCQVDW-DTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLY 219
+IC + W NE L+ W G+TG+P ID MRQL EGW+HH R+ VA FLTRG L+
Sbjct: 335 EICLSIPWAKPNEDLLQRWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLW 394
Query: 220 LSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFR--VYSPVAFGKKTD 271
SWE G F + LLDADW++ AGNWMW+S+SAF V PVA K+ D
Sbjct: 395 QSWEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLD 448
>gi|195569723|ref|XP_002102858.1| GD19278 [Drosophila simulans]
gi|194198785|gb|EDX12361.1| GD19278 [Drosophila simulans]
Length = 542
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 135/224 (60%), Gaps = 13/224 (5%)
Query: 61 GGETEALKRLEKSLANKE--WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY--- 115
GGET+AL L++ L ++ + R F PN A ++ S +S +L+FGCLSVR FY
Sbjct: 225 GGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSV 284
Query: 116 HELKKIL-----ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDW-D 169
H+L K + G + GQ+ WRE++Y + + PN+D+M+GN+IC + W
Sbjct: 285 HDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPWAK 344
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
NE L+ W G+TG+P ID MRQL EGW+HH R+ VA FLTRG L+ SWE G F
Sbjct: 345 PNEDLLQRWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHF 404
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFR--VYSPVAFGKKTD 271
+ LLDADW++ AGNWMW+S+SAF V PVA K+ D
Sbjct: 405 LKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLD 448
>gi|324103935|gb|ADY17887.1| cryptochrome [Spodoptera exigua]
gi|324103937|gb|ADY17888.1| cryptochrome [Spodoptera exigua]
Length = 548
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/244 (42%), Positives = 148/244 (60%), Gaps = 14/244 (5%)
Query: 41 VPTMKEMG--LDESSIPLCKFPGGETEALKRLEKSLA--NKEWVRKFEKPNTA-PNSLEP 95
P +++G L+ I + ++ GGET ALK++++ L + ++R P P+ L P
Sbjct: 195 TPKPEDLGVFLETEDIRMIRWVGGETTALKQMQQRLTVEYETFLRGSYLPTHGNPDLLGP 254
Query: 96 STTVLSPYLKFGCLSVRLFY---HELKKILATGPHAKPPVS--LLGQIYWREFYYVVGSD 150
+ LSP L+FGCLSVR FY +L + + G S + GQ+ WRE++Y + +
Sbjct: 255 PIS-LSPALRFGCLSVRSFYWSVQDLFRQVHQGRLTSNSASHFITGQLIWREYFYTMSVN 313
Query: 151 TPNFDKMKGNKICCQVDWDT-NEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAV 209
PN+ +M GN IC + W T + L+ W G+TG+PF+DA MRQLR EGW+HH AR+ V
Sbjct: 314 NPNYGQMAGNPICLDIPWKTPSGDELQRWMEGRTGFPFVDAAMRQLRTEGWLHHAARNTV 373
Query: 210 ACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF--FHQFFRVYSPVAFG 267
A FLTRG L+LSWE G + F + LLDADW++ AGNWMW+S+SAF PV G
Sbjct: 374 ASFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWVSSSAFEALLDSGECACPVRLG 433
Query: 268 KKTD 271
++ D
Sbjct: 434 QRLD 437
>gi|194744725|ref|XP_001954843.1| GF16541 [Drosophila ananassae]
gi|190627880|gb|EDV43404.1| GF16541 [Drosophila ananassae]
Length = 542
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 113/299 (37%), Positives = 163/299 (54%), Gaps = 34/299 (11%)
Query: 1 MTYQKLVSVLESLP-KPKPADDAPTSLPRECQGILHPDEHL---------VPTMKEM--- 47
+TYQ + ++ L P+P +DA E + D L +PT +
Sbjct: 156 LTYQMFLHTVQILGLPPRPVNDARL----EDASFVQMDPELLRNLGYLEQIPTPEHFNVY 211
Query: 48 GLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEK----PNTAPNSLEPSTTVLSPY 103
G + + ++ GGE +AL L++ L ++ FEK PN A +++ + +SP+
Sbjct: 212 GDNMGFLSKIRWRGGERQALLLLDERLKVEQ--HAFEKGYYMPNQALPNIQETPKSMSPH 269
Query: 104 LKFGCLSVRLFY---HELKKIL-----ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
L+FGCLSVR FY H+L K + G + GQ+ WRE++Y + + PN+D
Sbjct: 270 LRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYD 329
Query: 156 KMKGNKICCQVDW-DTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
+M GN+IC + W +E L+ W G+TG+P IDA MRQL EGW+HH+ R+ VA FLT
Sbjct: 330 RMDGNEICLSIPWAKRDETQLQKWRLGQTGFPLIDAAMRQLLAEGWLHHVLRNTVATFLT 389
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFR--VYSPVAFGKKTD 271
RG L+ SWE G F LLDADW++ AGNWMW+S+SAF V PVA K+ D
Sbjct: 390 RGGLWQSWEHGVQHFLRYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLD 448
>gi|293321543|emb|CAZ66367.1| cryptochrome [Suberites domuncula]
Length = 517
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/261 (38%), Positives = 155/261 (59%), Gaps = 11/261 (4%)
Query: 13 LPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGL-DESSIPLCKFPGGETEALKRLE 71
+P+P P + P E ++ E +P ++++GL DE ++ + GGETEAL RL
Sbjct: 191 IPEPHPMSLCMKAPPSE---LVPEPEGKIPKLQDLGLSDEFALYTNSWVGGETEALSRLS 247
Query: 72 KSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPP 131
+ R+ PN + L S LSPY+KFGCLSVR + +L + +T +
Sbjct: 248 SFCS-----RRAAIPNEPVHWLM-SKDTLSPYIKFGCLSVRQLFSQLLQFASTSSKGQEL 301
Query: 132 VSLLGQ-IYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDA 190
LL + + REF ++VGS +P FD M+GN +C Q+ W++N +++A+ +G+TGYP+IDA
Sbjct: 302 FELLTKNLLLREFAFLVGSSSPKFDVMEGNSLCIQLPWESNNVFIQAFRNGQTGYPWIDA 361
Query: 191 IMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSA 250
I+RQ+R +GW H LAR ++A FLTRG L++SW G+ F+E ++D + +++ WM S
Sbjct: 362 IIRQIRQDGWAHFLARQSIAVFLTRGYLWISWVLGKEFFQEFMIDFELPVSSVCWMQSSC 421
Query: 251 SAFFHQFFRVYSPVAFGKKTD 271
S FF Y P GK+ D
Sbjct: 422 SGFFCTQIESYDPCLVGKQID 442
>gi|313228844|emb|CBY17995.1| unnamed protein product [Oikopleura dioica]
Length = 525
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 165/297 (55%), Gaps = 32/297 (10%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
++ + SV+ SL P PA + + C + H + VPTM +GL E
Sbjct: 154 LSLDEFYSVIPSLDVPALPAPTVTAEMFKSCSVRIEENHQAIYGVPTMASLGL-ECPRAH 212
Query: 57 CKFPGGETEALKRLEKSL-------------ANKEWVRKFEKPNTAPN--SLEPSTTVLS 101
++PGGET AL+RL+ + +K ++E P T+ +P TT LS
Sbjct: 213 TRWPGGETVALERLKYKMKQNTLYEFNQGPSTSKAANHEYEIPGTSEPWFETQPETTGLS 272
Query: 102 PYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNK 161
PY+ G +S R F+H K K ++ GQ+ +REF+Y V NF +++GN+
Sbjct: 273 PYINLGSISPRTFWHGAKNC-----SEKMRTTVQGQMIYREFFYTVAYTVNNFTRIEGNR 327
Query: 162 ICCQVDWD---TNEK---YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
IC + W TNE+ ++E + G TGYP+IDA +RQ++ EGWI H++R ++A FLT
Sbjct: 328 ICKDIKWSDPKTNERAAEWIEKFKQGMTGYPWIDAAVRQMKTEGWITHISRFSLASFLTV 387
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQF-FRVYSPVAFGKKTD 271
G ++ SWE GQ +FEE LLDAD+A+NAGN++W++ SAF +Q + PV +K D
Sbjct: 388 GQMWCSWEVGQQLFEEFLLDADYALNAGNFLWVTGSAFANQIPVKALDPVKLARKWD 444
>gi|195157984|ref|XP_002019874.1| GL12637 [Drosophila persimilis]
gi|198455482|ref|XP_001360014.2| GA17677 [Drosophila pseudoobscura pseudoobscura]
gi|205696352|sp|Q293P8.2|CRY1_DROPS RecName: Full=Cryptochrome-1
gi|194116465|gb|EDW38508.1| GL12637 [Drosophila persimilis]
gi|198133263|gb|EAL29166.2| GA17677 [Drosophila pseudoobscura pseudoobscura]
Length = 540
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 161/293 (54%), Gaps = 22/293 (7%)
Query: 1 MTYQKLVSVLESLP-KPKPADDAPTSLPRECQGILHPDEHL-----VPTMKEMGLDESSI 54
+TYQ + ++ + P+PA DA + Q +HL VP + + ++
Sbjct: 156 LTYQMFLHTVQIIGVPPRPAIDAHINDATFIQLAPELRQHLGCFDQVPNPEHFNIYSDNM 215
Query: 55 PL---CKFPGGETEALKRLEKSLA--NKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCL 109
+ GGET+AL LE+ L + R + PN A +++ + +S +L+FGCL
Sbjct: 216 GFLAKINWRGGETQALALLEERLKVERNAFERGYYLPNQANPNIQEAPKSMSAHLRFGCL 275
Query: 110 SVRLFY---HELKKIL-----ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNK 161
SVR FY H+L + + G + + GQ+ WRE++Y + + PN+D+M+GN+
Sbjct: 276 SVRRFYWSVHDLFENVQLAACVRGVQIEGGAHITGQLIWREYFYTMSVNNPNYDRMEGNE 335
Query: 162 ICCQVDW-DTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYL 220
IC + W +E L+ W G+TG+P ID MRQL EGW+HH R+ VA FLTRG L+
Sbjct: 336 ICLTIPWAKPDENLLQRWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQ 395
Query: 221 SWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFR--VYSPVAFGKKTD 271
SWE G F + LLDADW++ AGNWMW+S+SAF V PVA K+ D
Sbjct: 396 SWEPGLKHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLD 448
>gi|195497880|ref|XP_002096288.1| GE25590 [Drosophila yakuba]
gi|194182389|gb|EDW96000.1| GE25590 [Drosophila yakuba]
Length = 542
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 134/224 (59%), Gaps = 13/224 (5%)
Query: 61 GGETEALKRLEKSLANKE--WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY--- 115
GGET+AL L++ L ++ + R F PN A ++ S +S +L+FGCLSVR FY
Sbjct: 225 GGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSV 284
Query: 116 HELKKIL-----ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDW-D 169
H+L K + G L GQ+ WRE++Y + + PN+D+M+GN+IC + W
Sbjct: 285 HDLFKNVQLRACVRGVQMTGGAHLTGQLIWREYFYTMSVNNPNYDRMEGNEICLSIPWAK 344
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
E L+ W G+TG+P ID MRQL EGW+HH R+ VA FLTRG L+ SWE G F
Sbjct: 345 PKEDLLQRWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHF 404
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFR--VYSPVAFGKKTD 271
+ LLDADW++ AGNWMW+S+SAF V PVA K+ D
Sbjct: 405 LKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLD 448
>gi|351713396|gb|EHB16315.1| Cryptochrome-1 [Heterocephalus glaber]
Length = 591
Score = 180 bits (456), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 80/126 (63%), Positives = 97/126 (76%), Gaps = 8/126 (6%)
Query: 146 VVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLA 205
+ ++ P FDKM+GN IC Q+ WD N + L W+ G+TG+P+IDAIM QLR EGWIHHLA
Sbjct: 259 LAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLA 318
Query: 206 RHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVA 265
RHAVACFLTRGDL+ VFEELLLDADW++NAG+WMWLS S+FF QFF Y PV
Sbjct: 319 RHAVACFLTRGDLW--------VFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVG 370
Query: 266 FGKKTD 271
FG++TD
Sbjct: 371 FGRRTD 376
>gi|284506739|dbj|BAI67363.1| cryptochrome [Bactrocera cucurbitae]
Length = 547
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 142/236 (60%), Gaps = 19/236 (8%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEK----PNTA-PNSLEPSTTVLSPYLKF 106
S + K+ GGE +AL L++ L +E R F+ PN A PN LE S +S +L+F
Sbjct: 218 SYVAKVKWHGGEQQALLHLDERLKVEE--RAFKNGYYLPNQANPNILE-SPKSMSAHLRF 274
Query: 107 GCLSVRLFY---HELKK-----ILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMK 158
GCLSVR FY H+L K L H + GQ+ WRE++Y + + P +D+M+
Sbjct: 275 GCLSVRRFYWSVHDLFKHVQIEALRQRVHMAGGEHITGQLIWREYFYTMSVNNPYYDRME 334
Query: 159 GNKICCQVDWDT-NEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
GN IC + W N++ L++W G+TG+P IDA MRQL EGW+HH R+ VA FLTRG
Sbjct: 335 GNAICLNIPWAAPNKEQLQSWRSGQTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGA 394
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFR--VYSPVAFGKKTD 271
L+ SWE G F + LLDADW++ AGNWMW+S+SAF V P+AF K+ D
Sbjct: 395 LWQSWEHGLRHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVSCPIAFSKRLD 450
>gi|339649212|gb|AEJ87227.1| putative light-receptive cryptochrome [Platynereis dumerilii]
Length = 365
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/246 (41%), Positives = 143/246 (58%), Gaps = 7/246 (2%)
Query: 2 TYQKLVSVLESLPKPK-PADDAPTSLPRECQGILHPDEHLVPTMKEMGLD----ESSIPL 56
TY+ V + L KP+ P D S + D+ +PT+KE+G + E P
Sbjct: 112 TYKLFCQVTDLLGKPETPHPDPDFSHVQMPVSDDFDDKFGLPTLKELGCEPECEEQEKPF 171
Query: 57 CKFPGGETEALKRLEKSLANKEWVRK--FEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
K+ GGET AL+ LE L + K + PN L +SP+L+FG LS+R F
Sbjct: 172 NKWQGGETGALELLETRLMIERTAYKAGYIMPNQYIPDLVGPPRSMSPHLRFGALSIRKF 231
Query: 115 YHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKY 174
Y +L A + +L Q+ WRE++Y + P+FDKM+GN IC Q+ W +E+
Sbjct: 232 YWDLHNNYAEVCGGEWLGALTAQLVWREYFYCMSYGNPSFDKMEGNPICLQIPWYKDEEA 291
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
LE W G+TG+P+IDA MRQLR EGW+HH+ RHAVACFLTRGDL++SW +G F + +L
Sbjct: 292 LEKWKQGQTGFPWIDACMRQLRYEGWMHHVGRHAVACFLTRGDLWISWVDGLEAFYKYML 351
Query: 235 DADWAM 240
D DW++
Sbjct: 352 DGDWSV 357
>gi|386762983|gb|AFJ22638.1| cryptochrome 1 [Agrotis ipsilon]
Length = 528
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/244 (40%), Positives = 148/244 (60%), Gaps = 14/244 (5%)
Query: 41 VPTMKEMG--LDESSIPLCKFPGGETEALKRLEKSLA--NKEWVRKFEKPNTA-PNSLEP 95
P +++G L+ I + ++ GGE+ ALK++++ LA ++ ++R P P+ L P
Sbjct: 195 APKPEDLGVFLENEDIRMIRWVGGESTALKQMQQRLAVEHETFLRGSYLPTHGNPDLLGP 254
Query: 96 STTVLSPYLKFGCLSVRLFY---HELKKILATGPHAKPPVS--LLGQIYWREFYYVVGSD 150
+ LSP L+FGCLSVR FY +L + + G S + GQ+ WRE+++ + +
Sbjct: 255 PIS-LSPALRFGCLSVRSFYWSVQDLFRKVHQGRLTTQSASHFITGQLIWREYFHTMSVN 313
Query: 151 TPNFDKMKGNKICCQVDWDTNE-KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAV 209
PN+ +M GN IC + W E L+ W G+TG+PF+DA MRQL+ EGW+HH AR+ V
Sbjct: 314 NPNYGQMSGNPICLDIPWKNPEGDELKRWEDGRTGFPFVDATMRQLKTEGWLHHAARNTV 373
Query: 210 ACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF--FHQFFRVYSPVAFG 267
A FLTRG L+LSWE G + F + LLD DW++ AGNWMW+S+SAF PV G
Sbjct: 374 ASFLTRGTLWLSWEHGLNHFLKYLLDVDWSVCAGNWMWVSSSAFEALLDSGECACPVRLG 433
Query: 268 KKTD 271
++ D
Sbjct: 434 QRLD 437
>gi|51944883|gb|AAU14170.1| cryptochrome [Bactrocera tryoni]
Length = 547
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 142/236 (60%), Gaps = 19/236 (8%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEK----PNTA-PNSLEPSTTVLSPYLKF 106
S + K+ GGE +AL L + L +E R F+ PN A PN LE S +S +L+F
Sbjct: 218 SYVAKVKWRGGEQQALLHLAERLKVEE--RAFKNGYYLPNQANPNILE-SPKSMSAHLRF 274
Query: 107 GCLSVRLFY---HELKKILATGP-----HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMK 158
GCLSVR FY H+L K + H + GQ+ WRE++Y + + P +D+M+
Sbjct: 275 GCLSVRRFYWSVHDLFKHVQIEAFYHRIHMAGGEHITGQLIWREYFYTMSVNNPYYDRME 334
Query: 159 GNKICCQVDWDT-NEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
GN+IC + W N++ L++W G+TG+P IDA MRQL EGW+HH R+ VA FLTRG
Sbjct: 335 GNEICLNIPWAPPNQEQLQSWRSGQTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGA 394
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFR--VYSPVAFGKKTD 271
L+ SWE G F + LLDADW++ AGNWMW+S+SAF V P+AF K+ D
Sbjct: 395 LWQSWEHGLRHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVSCPIAFSKRLD 450
>gi|194900020|ref|XP_001979555.1| GG23184 [Drosophila erecta]
gi|190651258|gb|EDV48513.1| GG23184 [Drosophila erecta]
Length = 542
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 114/295 (38%), Positives = 161/295 (54%), Gaps = 26/295 (8%)
Query: 1 MTYQKLVSVLE--SLPKPKPADDAP------TSLPRECQGILHPDEHLVPTMKEMGLDES 52
+TYQ + ++ LP P+P DA L E + ++ E L PT + E
Sbjct: 156 LTYQMFLHTVQIIGLP-PRPTADARLEDATFVELDPEFRRSINMFEKL-PTPHHFNVYED 213
Query: 53 SIPL---CKFPGGETEALKRLEKSLANKE--WVRKFEKPNTAPNSLEPSTTVLSPYLKFG 107
++ K+ GGE +AL L + L ++ + R F PN A ++ S +S +L+FG
Sbjct: 214 NMGFLAKIKWRGGEKQALLLLGERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFG 273
Query: 108 CLSVRLFY---HELKKIL-----ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG 159
CLSVR FY H+L K + G + GQ+ WRE++Y + + PN+D+M+G
Sbjct: 274 CLSVRRFYWSVHDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEG 333
Query: 160 NKICCQVDW-DTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
N+IC + W E L+ W G+TG+P ID MRQL EGW+HH R+ VA FLTRG L
Sbjct: 334 NEICLSIPWAKPKEDLLQRWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGL 393
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFR--VYSPVAFGKKTD 271
+ SWE G F + LLDADW++ AGNWMW+S+SAF V PVA K+ D
Sbjct: 394 WQSWEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLD 448
>gi|284506737|dbj|BAI67362.1| cryptochrome [Bactrocera cucurbitae]
Length = 547
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 140/236 (59%), Gaps = 19/236 (8%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEK----PNTA-PNSLEPSTTVLSPYLKF 106
S + K+ GGE +AL L++ L +E R F+ PN A PN LE S +S +L+F
Sbjct: 218 SYVAKVKWHGGEQQALLHLDERLKVEE--RAFKNGYYLPNQANPNILE-SPKSMSAHLRF 274
Query: 107 GCLSVRLFY---HELKK-----ILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMK 158
GCLSVR FY H+L K L H + GQ+ WRE++Y + + P +D+M+
Sbjct: 275 GCLSVRRFYWRVHDLFKHVQIEALRQRVHMAGGEHITGQLIWREYFYTMSVNNPYYDRME 334
Query: 159 GNKICCQVDWDT-NEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
GN IC + W N++ L++W G+TG+P IDA MRQL EGW+HH R+ VA FLTR
Sbjct: 335 GNAICLNIPWAAPNKEQLQSWRSGQTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRXA 394
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFR--VYSPVAFGKKTD 271
L+ SWE G F LLDADW++ AGNWMW+S+SAF V P+AF K+ D
Sbjct: 395 LWQSWEHGLRXFLXYLLDADWSVCAGNWMWVSSSAFERLLDSSLVSCPIAFSKRLD 450
>gi|80971696|gb|ABB52818.1| cryptochrome 2 [Sesamia nonagrioides]
Length = 264
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 94/218 (43%), Positives = 135/218 (61%), Gaps = 10/218 (4%)
Query: 41 VPTMKEMG--LDESSIPLCKFPGGETEALKRLEKSLANK--EWVRKFEKPNTAPNSLEPS 96
+P +++G L+ + + ++ GGET ALK++++ LA K ++R P L
Sbjct: 47 IPKPEDLGVFLENEDVRMIRWVGGETTALKQMQQRLAVKYETFLRGSYLPTHGNPDLLGR 106
Query: 97 TTVLSPYLKFGCLSVRLF---YHELKKILATGPHAKPPVS--LLGQIYWREFYYVVGSDT 151
LSP L+FGCLSVR F +L + + G A S + GQ+ WRE++Y + +
Sbjct: 107 PISLSPALRFGCLSVRSFCWSVQDLFREVHQGRLATQSASHFITGQLIWREYFYTMSVNN 166
Query: 152 PNFDKMKGNKICCQVDWDTNE-KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVA 210
PN+ +M GN IC + W E L+ W G+TG+PF+DA MRQLR EGW+HH+AR+ VA
Sbjct: 167 PNYGQMSGNPICLDIPWKNPEGDELQRWVEGRTGFPFVDAAMRQLRTEGWLHHVARNTVA 226
Query: 211 CFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWL 248
FLTRG L+LSWE G + F + LLDADW++ AGNWMW+
Sbjct: 227 FFLTRGTLWLSWEHGLNHFLKYLLDADWSVCAGNWMWV 264
>gi|195451205|ref|XP_002072813.1| GK13802 [Drosophila willistoni]
gi|194168898|gb|EDW83799.1| GK13802 [Drosophila willistoni]
Length = 543
Score = 177 bits (448), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 107/275 (38%), Positives = 156/275 (56%), Gaps = 24/275 (8%)
Query: 1 MTYQKLVSVLE--SLPKPKPADDAP------TSLPRECQGILHPDEHLVPTMKEMGL--- 49
+TYQ + +E LP P+P +D + +E Q L +H PT + +
Sbjct: 158 LTYQMFLHTVEIIGLP-PRPTNDPNWNNVGFVEISQELQRELKYLQHF-PTPEYFNIYCD 215
Query: 50 DESSIPLCKFPGGETEALKRLEKSLANKE--WVRKFEKPNTAPNSLEPSTTVLSPYLKFG 107
+ + + GGETEAL L++ L ++ + R + PN A ++ + +SP+L+FG
Sbjct: 216 NMGYLAKINWRGGETEALLLLQERLKVEQSAFERGYYLPNQALPNILDTPKSMSPHLRFG 275
Query: 108 CLSVRLFY---HELKKIL-----ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG 159
CLSVR FY H+L K + G + GQ+ WRE++Y + + N+D+M G
Sbjct: 276 CLSVRRFYWNVHDLFKNVQLQACVRGVQMTGGSHITGQLIWREYFYTMSVNNSNYDRMDG 335
Query: 160 NKICCQVDWDT-NEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
N+IC + W +E+ LE W G+TG+P ID MRQL EGW+HH R+ VA FLTRG L
Sbjct: 336 NEICLNIPWSKPHEEKLERWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGL 395
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF 253
+ SWE G F + LLDADW++ AGNWMW+S+SAF
Sbjct: 396 WQSWEHGVQHFLKYLLDADWSVCAGNWMWVSSSAF 430
>gi|283476381|emb|CAY26038.1| chryptochrome 1 [Acyrthosiphon pisum]
Length = 553
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 139/224 (62%), Gaps = 15/224 (6%)
Query: 61 GGETEALKRLEKSLA--NKEWVRKFEKPNTA-PNSLEPSTTVLSPYLKFGCLSVRLFYHE 117
GGET AL++L++ L + +V F PN P+ L P ++ LS L++GCLS+R FY E
Sbjct: 216 GGETRALEQLKERLEYEKEAFVNGFYLPNQVNPDLLSPPSS-LSAALRYGCLSIRKFYWE 274
Query: 118 LKKILATGPHAK--PPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDT----- 170
L K+ P S+ Q+ WR+++Y + D NF +++ N C + W+
Sbjct: 275 LTKLFINKFEGDLLPMYSVTSQLIWRDYFYTMSIDNKNFGQIEDNPACISIPWNDIKIPE 334
Query: 171 NEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFE 230
N+K LE W GKTGYPFIDA MRQL EGWIHH+ R+++A FLTRGDL++SW EG + F
Sbjct: 335 NKKMLECWKTGKTGYPFIDAGMRQLMQEGWIHHVVRNSLASFLTRGDLWISWVEGLNHFM 394
Query: 231 ELLLDADWAMNAGNWMWLSASAFFHQFFR---VYSPVAFGKKTD 271
+ LLDAD+++ +GNW+W+S+S F Q PV++G + D
Sbjct: 395 KYLLDADFSVCSGNWIWVSSST-FEQLLDCPLCVCPVSYGLRLD 437
>gi|283806550|ref|NP_001164532.1| chryptochrome 1 [Acyrthosiphon pisum]
Length = 553
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 139/224 (62%), Gaps = 15/224 (6%)
Query: 61 GGETEALKRLEKSLA--NKEWVRKFEKPNTA-PNSLEPSTTVLSPYLKFGCLSVRLFYHE 117
GGET AL++L++ L + +V F PN P+ L P ++ LS L++GCLS+R FY E
Sbjct: 216 GGETRALEQLKERLEYEKEAFVNGFYLPNQVNPDLLSPPSS-LSAALRYGCLSIRKFYWE 274
Query: 118 LKKILATGPHAK--PPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDT----- 170
L K+ P S+ Q+ WR+++Y + D NF +++ N C + W+
Sbjct: 275 LTKLFINKFEGDLLPMYSVTSQLIWRDYFYTMSIDNKNFGQIEDNPACISIPWNDIKIPE 334
Query: 171 NEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFE 230
N+K LE W GKTGYPFIDA MRQL EGWIHH+ R+++A FLTRGDL++SW EG + F
Sbjct: 335 NKKMLECWKTGKTGYPFIDAGMRQLMQEGWIHHVVRNSLASFLTRGDLWISWVEGLNHFM 394
Query: 231 ELLLDADWAMNAGNWMWLSASAFFHQFFR---VYSPVAFGKKTD 271
+ LLDAD+++ +GNW+W+S+S F Q PV++G + D
Sbjct: 395 KYLLDADFSVCSGNWIWVSSST-FEQLLDCPLCVCPVSYGLRLD 437
>gi|340376121|ref|XP_003386582.1| PREDICTED: cryptochrome-2-like [Amphimedon queenslandica]
Length = 544
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 146/263 (55%), Gaps = 9/263 (3%)
Query: 11 ESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLD-ESSIPLCKFPGGETEALKR 69
E P+P P E Q + P E+ +P+++++G E ++ + GGETE L R
Sbjct: 213 EPFPEPDPVLVLLRQNSPEDQDLEEP-ENRIPSLQDLGFGLEETLYTNSWVGGETEGLSR 271
Query: 70 LEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAK 129
L + R+ +PN P + S L PY++FGCLSVR + +L++ +T +
Sbjct: 272 LSNFCS-----RRSTQPN-EPITWLISKDSLGPYIRFGCLSVRQLFSQLRQYASTSSKGQ 325
Query: 130 PPVS-LLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFI 188
+ L + REF Y+VG P FD MK N +C Q+ W+ NE++ AW G+TGYP+I
Sbjct: 326 VLFAELTKNLLMREFAYMVGLTVPKFDTMKDNPLCIQLPWEENERFFYAWKEGRTGYPWI 385
Query: 189 DAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWL 248
DA MRQ+ +GW H+ R ++A FLTRG L++SWE+G F+E +LD + ++ WM
Sbjct: 386 DAAMRQIVRDGWSHYSTRQSIAVFLTRGYLWISWEKGLEFFQEHMLDFELPVSTVCWMQS 445
Query: 249 SASAFFHQFFRVYSPVAFGKKTD 271
S S FF F Y P GK+ D
Sbjct: 446 SCSGFFVDFIESYDPCYIGKQMD 468
>gi|195055524|ref|XP_001994667.1| GH17366 [Drosophila grimshawi]
gi|193892430|gb|EDV91296.1| GH17366 [Drosophila grimshawi]
Length = 539
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 135/224 (60%), Gaps = 13/224 (5%)
Query: 61 GGETEALKRLEKSLANKE--WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY--- 115
GGE++AL L + L ++ + R + PN A ++ +S +L+FGCLSVR FY
Sbjct: 225 GGESQALLLLGERLKVEQHAFERGYYLPNQALPNIVDKPKSMSAHLRFGCLSVRRFYWNV 284
Query: 116 HELKKILA-----TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDW-D 169
H+L K + G + GQ+ WRE++Y + + P +D+M+GN+IC + W
Sbjct: 285 HDLFKNVQLRACIRGVQMTSGAHITGQLIWREYFYTMSVNNPQYDRMEGNEICLNIPWAK 344
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
NE +L+ W G+TG+P IDA MRQL EGW+HH R+ VA FLTRG L+ +WE G F
Sbjct: 345 PNEDHLQRWRLGQTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEFGLQHF 404
Query: 230 EELLLDADWAMNAGNWMWLSASAF--FHQFFRVYSPVAFGKKTD 271
+ LLDADW++ AGNWMW+S+SAF +V PVA K+ D
Sbjct: 405 LKYLLDADWSVCAGNWMWVSSSAFERLLDTSQVSCPVALAKRFD 448
>gi|312371404|gb|EFR19605.1| hypothetical protein AND_22153 [Anopheles darlingi]
Length = 608
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 112/296 (37%), Positives = 160/296 (54%), Gaps = 29/296 (9%)
Query: 1 MTYQKL---VSVLESLPKPKPADD--------APTSLPRECQGILHPDEHLVPTMKEMGL 49
+TYQ V ++ P+P A D P L E + L+ +H+ P +E GL
Sbjct: 216 LTYQMFLHTVDIIGEPPRPVGAPDFEFIEFGRIPAILASELK--LYQQQHM-PGPEEFGL 272
Query: 50 ---DESSIPLCKFPGGETEALKRLEKSLANKE--WVRKFEKPNTA-PNSLEPSTTVLSPY 103
+ I K+ GGET AL+ L L +E + + P A P L P+T+ +S
Sbjct: 273 TYDGNADIAFQKWIGGETRALESLGARLKQEEEAFREGYYLPTQAKPEILGPATS-MSAA 331
Query: 104 LKFGCLSVRLFY---HELKKILATGPHAKPPVS--LLGQIYWREFYYVVGSDTPNFDKMK 158
L+FGCLSVR+FY H+L + K P+ + GQ+ WRE++Y + P++ +M
Sbjct: 332 LRFGCLSVRMFYWCVHDLFAKVQASSQFKCPIGQHITGQLIWREYFYTMSVRNPHYGEMD 391
Query: 159 GNKICCQVDW-DTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
N IC + W + + L W G+TG+P IDA MRQL EGW+HH+ R+ A FLTRG
Sbjct: 392 RNPICLNIPWYEPVDDSLVRWKEGRTGFPLIDAAMRQLLAEGWLHHILRNITATFLTRGG 451
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQF--FRVYSPVAFGKKTD 271
L++SWE G F + LLDADW++ AGNWMW+S+SAF + PVA + D
Sbjct: 452 LWISWEAGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSKCTCPVALAYRLD 507
>gi|195389935|ref|XP_002053627.1| GJ24000 [Drosophila virilis]
gi|194151713|gb|EDW67147.1| GJ24000 [Drosophila virilis]
Length = 539
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 135/225 (60%), Gaps = 15/225 (6%)
Query: 61 GGETEALKRLEKSLANKE--WVRKFEKPNTA-PNSLEPSTTVLSPYLKFGCLSVRLFY-- 115
GGET+AL L + L ++ + R + PN A PN LE + +S +L+FGCLSVR FY
Sbjct: 225 GGETQALSLLGERLKVEQHAFERGYYLPNQALPNILETPKS-MSAHLRFGCLSVRRFYWS 283
Query: 116 -HELKKIL-----ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWD 169
H+L K + G + GQ+ WRE++Y + + P +D+M+GN+IC + W
Sbjct: 284 MHDLFKNVQMRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPQYDRMEGNEICLSIPWS 343
Query: 170 T-NEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSV 228
+ L+ W G+TG+P ID+ MRQL EGW+HH R+ VA FLTRG L+ +WE G
Sbjct: 344 KPDADQLQRWRLGQTGFPLIDSAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWELGLEH 403
Query: 229 FEELLLDADWAMNAGNWMWLSASAFFHQFFR--VYSPVAFGKKTD 271
F + LLDADW++ AGNWMW+S+SAF V PVA K+ D
Sbjct: 404 FLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLD 448
>gi|158301399|ref|XP_321104.4| AGAP001958-PA [Anopheles gambiae str. PEST]
gi|205696380|sp|Q7PYI7.4|CRY1_ANOGA RecName: Full=Cryptochrome-1; Short=agCRY1
gi|78191295|gb|ABB29886.1| cryptochrome 1 [Anopheles gambiae]
gi|157012451|gb|EAA01270.4| AGAP001958-PA [Anopheles gambiae str. PEST]
Length = 545
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 159/296 (53%), Gaps = 31/296 (10%)
Query: 1 MTYQKL---VSVLESLPKPKPADD--------APTSLPRE---CQGILHPDEHLVPTMKE 46
+TYQ V+++ P+P A + P L E CQ + PD+ +
Sbjct: 156 LTYQMFLHTVNIIGDPPRPVGAPNFEYVEFGRVPALLASELKLCQQMPAPDDFGIHYD-- 213
Query: 47 MGLDESSIPLCKFPGGETEALKRLEKSLANKE--WVRKFEKPNTA-PNSLEPSTTVLSPY 103
+ I K+ GGET AL+ L L +E + + P A P L P+T+ +S
Sbjct: 214 ---GNARIAFQKWIGGETRALEALGARLKQEEEAFREGYYLPTQAKPEILGPATS-MSAA 269
Query: 104 LKFGCLSVRLFY---HELKKILATGPHAKPPVS--LLGQIYWREFYYVVGSDTPNFDKMK 158
L+FGCLSVR+FY H+L + + K P + GQ+ WRE++Y + P++ +M+
Sbjct: 270 LRFGCLSVRMFYWCVHDLFAKVQSNSQFKYPGGHHITGQLIWREYFYTMSVQNPHYGEME 329
Query: 159 GNKICCQVDW-DTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
N IC + W + L W G+TG+P IDA MRQL EGW+HH+ R+ A FLTRG
Sbjct: 330 RNPICLNIPWYKPEDDSLTRWKEGRTGFPMIDAAMRQLLAEGWLHHILRNITATFLTRGG 389
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF--FHQFFRVYSPVAFGKKTD 271
L+LSWEEG F + LLDADW++ AGNWMW+S+SAF + P+A ++ D
Sbjct: 390 LWLSWEEGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSKCTCPIALARRLD 445
>gi|195107460|ref|XP_001998330.1| GI23904 [Drosophila mojavensis]
gi|193914924|gb|EDW13791.1| GI23904 [Drosophila mojavensis]
Length = 539
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 134/224 (59%), Gaps = 13/224 (5%)
Query: 61 GGETEALKRLEKSLANKE--WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY--- 115
GGET+AL L + L ++ + R + PN A ++ + +S +L+FGCLSVR FY
Sbjct: 225 GGETQALLLLGERLKVEQHAFERGYYLPNQAMPNILDTPKSMSAHLRFGCLSVRRFYWCM 284
Query: 116 HELKKIL-----ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDW-D 169
H+L K + G + GQ+ WRE++Y + + P +D+M+GN+IC + W
Sbjct: 285 HDLFKNVQLRACVRGVQMSGGAHITGQLIWREYFYTMSVNNPQYDRMEGNEICLSIPWAK 344
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
+ + L+ W G+TG+P ID+ MRQL EGW+HH R+ VA FLTRG L+ +WE G F
Sbjct: 345 PDAEQLQRWRLGQTGFPLIDSAMRQLLAEGWLHHTLRNTVATFLTRGGLWQNWEFGLQHF 404
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFR--VYSPVAFGKKTD 271
+ LLDADW++ AGNWMW+S+SAF V PVA K+ D
Sbjct: 405 LKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLD 448
>gi|340376095|ref|XP_003386569.1| PREDICTED: cryptochrome-2-like [Amphimedon queenslandica]
Length = 550
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 97/275 (35%), Positives = 154/275 (56%), Gaps = 10/275 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQG---ILHPDEHLVPTMKEMGLDESSIPLC 57
+T++ ++L L P +P++ + + + +P++ +G + +
Sbjct: 207 LTFKDFRTLLSKLKPPAVPISSPSTKQKYNEDNIPMFKVQTFQIPSLASLGCYDVELGTG 266
Query: 58 KFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHE 117
+ GGETEALKRL+ N VR KP T LSPY++FGCLSVR F+H
Sbjct: 267 PWVGGETEALKRLD----NYCTVRS--KPFDNFLDCLFDKTSLSPYVRFGCLSVRHFWHY 320
Query: 118 LKKILATGPHAKPPVS-LLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
++++ +T V + ++ REFY++V S PNFD N IC Q+ W+ + L
Sbjct: 321 VRQLASTDKSKMTLVQEVSSKLLQREFYFLVSSQVPNFDTDTQNPICIQLPWEFDADGLR 380
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
W G TGYP+IDA +RQ+ EGWIH+L R ++A FLTRGDL++SW +G FE +LD
Sbjct: 381 RWRSGMTGYPWIDAAIRQMLKEGWIHNLLRESIATFLTRGDLWISWLKGAESFEMYMLDY 440
Query: 237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+ +++ G WM S++AF Y+P+++G++ D
Sbjct: 441 EPSVSCGCWMKSSSTAFITGTIEHYNPISYGQQLD 475
>gi|157104635|ref|XP_001648498.1| DNA photolyase [Aedes aegypti]
gi|122106526|sp|Q17DK5.1|CRY1_AEDAE RecName: Full=Cryptochrome-1
gi|108880271|gb|EAT44496.1| AAEL004146-PA [Aedes aegypti]
Length = 545
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 136/222 (61%), Gaps = 12/222 (5%)
Query: 61 GGETEALKRLEKSLANKE--WVRKFEKPNTA-PNSLEPSTTVLSPYLKFGCLSVRLFY-- 115
GGET+AL+ L L +E ++ + P A P L P T+ +S L+FGCLSVR+FY
Sbjct: 224 GGETKALECLGHRLKQEEEAFLGGYFLPTQAKPEFLVPPTS-MSAALRFGCLSVRMFYWC 282
Query: 116 -HEL-KKILATGPHAKPPVS-LLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDW-DTN 171
H+L +K+ A + P + GQ+ WRE++Y + P++ +M+ N IC + W +
Sbjct: 283 VHDLYEKVQANNQYRNPGGQHITGQLIWREYFYTMSVHNPHYAEMEANPICLNIPWYEPK 342
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ L+ W G+TG+P IDA MRQL EGW+HH+ R+ A FLTRG L++SWE G F +
Sbjct: 343 DDSLDRWKEGRTGFPMIDAAMRQLLAEGWLHHILRNITATFLTRGALWISWEAGVQHFLK 402
Query: 232 LLLDADWAMNAGNWMWLSASAF--FHQFFRVYSPVAFGKKTD 271
LLDADW++ AGNWMW+S+SAF SP+A ++ D
Sbjct: 403 YLLDADWSVCAGNWMWVSSSAFEKLLDSSSCTSPIALARRLD 444
>gi|170047814|ref|XP_001851403.1| DNA photolyase [Culex quinquefasciatus]
gi|205694137|sp|B0WRR9.1|CRY1_CULQU RecName: Full=Cryptochrome-1
gi|167870095|gb|EDS33478.1| DNA photolyase [Culex quinquefasciatus]
Length = 499
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 134/225 (59%), Gaps = 12/225 (5%)
Query: 58 KFPGGETEALKRLEKSLANKE--WVRKFEKPNTA-PNSLEPSTTVLSPYLKFGCLSVRLF 114
++ GGE +AL+ L + L +E + + P A P+ L P ++ +S L+FGCLSVR+F
Sbjct: 175 RWTGGEAKALELLGRRLKQEEEAFREGYYLPTQARPDFLAPPSS-MSAALRFGCLSVRMF 233
Query: 115 Y---HELKKILATGPHAKPPVS--LLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDW- 168
Y H+L + K P + GQ+ WRE++Y + P++ M+ N IC + W
Sbjct: 234 YWCVHDLFARVQANNQLKHPGGHHITGQLIWREYFYTMSVHNPHYAVMELNPICLNIPWY 293
Query: 169 DTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSV 228
+ + L+ W G+TG+P IDA MRQL EGW+HH+ R+ A FLTRG L++SWE G
Sbjct: 294 EAKDDSLDRWKEGRTGFPLIDAAMRQLMAEGWLHHILRNITATFLTRGGLWISWEAGVQH 353
Query: 229 FEELLLDADWAMNAGNWMWLSASAF--FHQFFRVYSPVAFGKKTD 271
F + LLDADW++ AGNWMW+S+SAF SPVA ++ D
Sbjct: 354 FLKYLLDADWSVCAGNWMWVSSSAFEKLLDSSSCTSPVALARRLD 398
>gi|379136508|gb|AFC93483.1| cryptochrome 1, partial [Gadus morhua]
Length = 109
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 72/107 (67%), Positives = 84/107 (78%)
Query: 127 HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYP 186
H+ PPVSL GQ+ WREF+Y PNFD+M N +C Q+DWDT +YL AW +TG+P
Sbjct: 3 HSAPPVSLHGQLLWREFFYTASVGVPNFDRMLDNPVCTQIDWDTXPEYLSAWKEARTGFP 62
Query: 187 FIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELL 233
FIDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG+ VFE LL
Sbjct: 63 FIDAIMTQLRREGWIHHLARHAVACFLTRGDLWISWEEGKKVFEGLL 109
>gi|302745158|gb|ADL62682.1| cryptochrome 2b, partial [Phreatichthys andruzzii]
Length = 180
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/114 (61%), Positives = 90/114 (78%)
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+GN IC ++ WD N + L W+ KTG+P+IDAIM QLR EGWIH+LAR+AV CFLTRGD
Sbjct: 1 EGNPICIRIPWDRNPEALAKWAEAKTGFPWIDAIMTQLRQEGWIHYLARNAVTCFLTRGD 60
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
L+++WEEG +FEELLLDADW++NAG+W+ S S+FF QFF Y PV FG++ D
Sbjct: 61 LWINWEEGMKIFEELLLDADWSVNAGSWLCHSCSSFFQQFFHCYCPVGFGRRID 114
>gi|52699557|gb|AAU86901.1| cryptochrome 2 [Sylvia borin]
Length = 244
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 70/94 (74%), Positives = 82/94 (87%)
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLDAD
Sbjct: 1 WAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDAD 60
Query: 238 WAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 61 FSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 94
>gi|31321921|gb|AAM50087.1| cryptochrome 4 [Gallus gallus]
Length = 140
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 71/104 (68%), Positives = 86/104 (82%)
Query: 168 WDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQS 227
W + + L W +TG+P+IDAIM QLR EGWIHHLARHA ACFLTRGDL++SWEEG
Sbjct: 2 WYEDAERLHKWKTAQTGFPWIDAIMTQLRQEGWIHHLARHAAACFLTRGDLWISWEEGMK 61
Query: 228 VFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
VFEELLLDAD+++NAGNWMWLSASAFFH + R++ PV FG++TD
Sbjct: 62 VFEELLLDADYSINAGNWMWLSASAFFHHYTRIFCPVRFGRRTD 105
>gi|313234987|emb|CBY24933.1| unnamed protein product [Oikopleura dioica]
Length = 374
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 116/182 (63%), Gaps = 9/182 (4%)
Query: 53 SIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVR 112
S+P+ + GGE +ALK L+ + N + N + P TT LS Y +GC+S R
Sbjct: 201 SLPI--YRGGERQALKALQAKI-NDPTLFTLNGFNQGVKTKLPHTTYLSAYQNYGCISTR 257
Query: 113 LFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
F+ +K+ P +K + L GQI +REF+YV S NF KM GN+IC Q++W NE
Sbjct: 258 HFWKAAEKL----PESKT-IMLRGQIMYREFFYVAASQVNNFTKMAGNRICRQIEWYKNE 312
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQ-SVFEE 231
++L AW G+TGYP+IDA+MRQL EG+IHHL R AVA FLT G L+L+WE GQ S+F +
Sbjct: 313 EHLSAWQEGRTGYPYIDAVMRQLVTEGFIHHLNRWAVASFLTNGQLWLNWEHGQESMFYD 372
Query: 232 LL 233
L+
Sbjct: 373 LI 374
>gi|47212596|emb|CAF93038.1| unnamed protein product [Tetraodon nigroviridis]
Length = 662
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 73/128 (57%), Positives = 87/128 (67%), Gaps = 21/128 (16%)
Query: 165 QVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEE 224
Q+ WD N + L W+ G+TG+P+IDAIM QLR EGWIHH AR A ACFLTRGDL++SWE
Sbjct: 452 QIPWDQNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHQARRASACFLTRGDLWISWEC 511
Query: 225 GQ---------------------SVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSP 263
G VFEELLLDADW++NAG+WMWLS SAFF QFF+ Y P
Sbjct: 512 GMKVGGPPWSRRRRRRLSARLLPQVFEELLLDADWSVNAGSWMWLSCSAFFQQFFKCYCP 571
Query: 264 VAFGKKTD 271
V FG++TD
Sbjct: 572 VGFGRRTD 579
>gi|13543860|gb|AAH06077.1| Cry2 protein, partial [Mus musculus]
Length = 243
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 80/91 (87%)
Query: 181 GKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAM 240
GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLDAD+++
Sbjct: 2 GKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSV 61
Query: 241 NAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 62 NAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 92
>gi|323650256|gb|ADX97214.1| cryptochrome 1a isoform 1 [Perca flavescens]
Length = 278
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/84 (77%), Positives = 73/84 (86%)
Query: 188 IDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMW 247
IDAIM QLR EGWIHHLARHAVACFLTRGDL++ WEEG VFEELLLDADW++NAG+WMW
Sbjct: 1 IDAIMTQLRQEGWIHHLARHAVACFLTRGDLWIGWEEGMKVFEELLLDADWSVNAGSWMW 60
Query: 248 LSASAFFHQFFRVYSPVAFGKKTD 271
LS S+FF QFF Y PV FG++TD
Sbjct: 61 LSCSSFFQQFFHCYCPVGFGRRTD 84
>gi|320166331|gb|EFW43230.1| photolyase [Capsaspora owczarzaki ATCC 30864]
Length = 559
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 117/200 (58%), Gaps = 6/200 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLP-RECQGILHPDEHLVPTMKEMGLDESSIPLCKF 59
+TY K +S++ES+ P DAP L R G +P++ E+G+ E PL F
Sbjct: 136 LTYGKFLSLIESIGPPVAPLDAPHRLAERGPAGQTDAATGGIPSLAELGISEPHTPLM-F 194
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLE-PSTTVLSPYLKFGCLSVRLFYHEL 118
GGET R+ L + V F KP P E PS++V+SPYL+FGC+S R F+ E+
Sbjct: 195 HGGETAGQARMHHYLGDLARVANFSKPELDPTLFEEPSSSVMSPYLRFGCVSPRRFFFEI 254
Query: 119 KKI-LATG-PHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
K+ + +G +PPVSLLGQ+YWREF+Y+V + TPNFD+ GN IC Q+ WD N +YL
Sbjct: 255 NKVYIDSGVTPTQPPVSLLGQLYWREFFYLVAAGTPNFDRAAGNPICKQIQWDVNPEYLA 314
Query: 177 AWSHGKTGYPFIDAIMRQLR 196
AW + G F+ + LR
Sbjct: 315 AWHYDPEGK-FVRRFVPALR 333
>gi|390988287|gb|AFM36775.1| cryptochrome, partial [Amphiprion clarkii]
Length = 97
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 64/97 (65%), Positives = 78/97 (80%)
Query: 144 YYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHH 203
+Y ++ P FDKM+ N IC Q+ WD N + L W+ G+TG+P+IDAIM QLR EGWIHH
Sbjct: 1 FYTAATNNPCFDKMESNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHH 60
Query: 204 LARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAM 240
LARHAVACFLTRGDL++SWEEG VFEELLLDADW++
Sbjct: 61 LARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSV 97
>gi|298162610|gb|ADI59672.1| cryptochrome [Haliotis discus hannai]
Length = 96
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/96 (66%), Positives = 77/96 (80%)
Query: 145 YVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHL 204
Y ++ P FDKM+ N IC Q+ WD N + L W+ G+TG+P+IDAIM QLR EGWIHHL
Sbjct: 1 YTAATNNPCFDKMESNPICVQIPWDRNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHL 60
Query: 205 ARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAM 240
ARHAVACFLTRGDL++SWEEG VFEELLLDADW++
Sbjct: 61 ARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSV 96
>gi|320160751|ref|YP_004173975.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
gi|319994604|dbj|BAJ63375.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
Length = 466
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 122/224 (54%), Gaps = 11/224 (4%)
Query: 53 SIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSL-EPSTTVLSPYLKFGCLSV 111
+I L FP GE EAL+RLE L+ R++ N L +P T+ LSPY +FG LS
Sbjct: 179 AIFLQDFPPGELEALRRLENFLSGP--AREYAD---GRNRLDQPGTSFLSPYFRFGMLSP 233
Query: 112 RLFYHELKKIL--ATGPHAKPPVSL-LGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDW 168
R +++K++ + P K L ++ WREFY + P+ M N ++W
Sbjct: 234 RWAVFQVRKMIQITSSPDEKRGYEAWLNELIWREFYISILYHYPHVLAMAFNPALRAIEW 293
Query: 169 DTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSV 228
L+AW GKTGYP +DA MRQL+ GW+H+ AR VA FLT+ DL ++W+EG+
Sbjct: 294 RDAPSELQAWKEGKTGYPVVDAAMRQLKATGWMHNRARMIVASFLTK-DLLINWQEGEQW 352
Query: 229 FEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
F + L+D D A N G W W + +FR+++PV K D
Sbjct: 353 FMQNLVDGDPAANNGGWQWTAGVGTDAAPYFRIFNPVLQSAKFD 396
>gi|193216116|ref|YP_001997315.1| deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
35110]
gi|193089593|gb|ACF14868.1| Deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
35110]
Length = 477
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 121/214 (56%), Gaps = 8/214 (3%)
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKK 120
GGE + LKRL L+ + K + A N+ T++LS L+FG LS+R +HE +
Sbjct: 201 GGEPKGLKRLRAFLSQNIYHYKELRDFPATNA----TSLLSADLRFGTLSIRHVFHESMR 256
Query: 121 IL--ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
++ A+ P + + + ++ WREFY+ + P+ +K + W+ NE + EAW
Sbjct: 257 LVPQASEPAREGIQTFISELIWREFYFQILDHFPHVEKHSFKPEFENLKWENNEVFFEAW 316
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+G+TGYP +DA MR LR GW+H+ R VA FLT+ DL + W G+ F + L+D D
Sbjct: 317 KNGQTGYPIVDAAMRALRQTGWMHNRLRMIVASFLTK-DLLIDWRWGELYFMQHLIDGDL 375
Query: 239 AMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
A N G W W +++ Q +FR+++PV +K D
Sbjct: 376 AANNGGWQWSASTGTDAQPYFRIFNPVLQSQKFD 409
>gi|347754095|ref|YP_004861659.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
gi|347586613|gb|AEP11143.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
Length = 475
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 124/232 (53%), Gaps = 13/232 (5%)
Query: 42 PTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLS 101
P++K++G S P PGGET A RL+ + N E+ + + T+ LS
Sbjct: 182 PSLKDLGFATSVSPP---PGGETSAQARLQGFIQNGLARYATERDVLSADG----TSRLS 234
Query: 102 PYLKFGCLSVRLFYHELKKILATGPHAKPPV-SLLGQIYWREFYYVVGSDTPNFDKMKGN 160
PYL+FGCLS R Y ++ + P P + S + ++ WR+FY + P +
Sbjct: 235 PYLRFGCLSPRRAYWAAREAV---PEGSPGMESWIAELIWRDFYRQILFHFPYVETGAFR 291
Query: 161 KICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYL 220
+ + W+ N + + W GKTG+P +DA MRQL GW+H+ AR VA FLT+ DL +
Sbjct: 292 RAYDDLAWENNASWFDLWCQGKTGFPIVDAAMRQLLTTGWMHNRARMIVASFLTK-DLLI 350
Query: 221 SWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
W G+ F + L+D D A N G W W +++ Q +FR+++P A GKK D
Sbjct: 351 DWRWGERHFMKHLVDGDLAANNGGWQWAASTGTDAQPYFRIFNPTAQGKKFD 402
>gi|322369279|ref|ZP_08043844.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus
DX253]
gi|320551011|gb|EFW92660.1| deoxyribodipyrimidine photo-lyase [Haladaptatus paucihalophilus
DX253]
Length = 464
Score = 137 bits (345), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 133/262 (50%), Gaps = 19/262 (7%)
Query: 19 ADDAPTSLPRECQGILHPDEHL-----VPTMKEMGLDESSIPLCKFPGGETEALKRLEKS 73
A DAP P E I+ PDE + +PT+ ++G ++ P + P TEA + L +
Sbjct: 151 AKDAPFDAPDE---IVVPDEVVEEGIEIPTLADLGFED---PEAEIPPAGTEAARDLLSA 204
Query: 74 LANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH--ELKKILATGPHAKPP 131
+ V +++K P ST+ LSP+LKFG + +R + E K A A
Sbjct: 205 FCEDD-VYRYDKARDYP--ARESTSRLSPHLKFGTVGIREVWEATERAKDAAESEDAAES 261
Query: 132 VS-LLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDA 190
V GQ+ WREFY V DTP+ + W + + AW G+TGYP +DA
Sbjct: 262 VEEFQGQLAWREFYAHVLDDTPSVVVENYKDYQYDIAWRDDPDGVRAWKDGETGYPIVDA 321
Query: 191 IMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSA 250
MRQLR E W+H+ R +A FLT+ DL + W EG + L+D D A + G W W ++
Sbjct: 322 GMRQLREEAWVHNRVRMIIASFLTK-DLLVDWREGYDWYRRKLVDHDTANDNGGWQWAAS 380
Query: 251 SAFFHQ-FFRVYSPVAFGKKTD 271
+ Q +FRV++P G++ D
Sbjct: 381 TGTDAQPYFRVFNPTTQGERFD 402
>gi|422759394|ref|ZP_16813156.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322412229|gb|EFY03137.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 474
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 101/176 (57%), Gaps = 6/176 (3%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSPYL+ G +S+R Y + ++ P + L ++ WR+FY++V PN K
Sbjct: 228 TSFLSPYLRLGMVSIRTVY----QAVSQAPASSGQAVFLKELAWRDFYHMVYVANPNQKK 283
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
+ + ++WD N +AW G+TGYP IDA M+QLR GW+H+ R VA FLT+
Sbjct: 284 LAIQEAFRHLEWDENPATFKAWKEGQTGYPIIDAAMKQLRATGWMHNRLRMVVASFLTK- 342
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMW-LSASAFFHQFFRVYSPVAFGKKTD 271
DL + W G++ F+E L+D D A N G W W S +FR+++PV GK+ D
Sbjct: 343 DLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFD 398
>gi|452207964|ref|YP_007488086.1| deoxyribodipyrimidine photolyase [Natronomonas moolapensis 8.8.11]
gi|452084064|emb|CCQ37397.1| deoxyribodipyrimidine photolyase [Natronomonas moolapensis 8.8.11]
Length = 466
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 124/234 (52%), Gaps = 10/234 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+PT+ ++G D P + P T+ + L +S + + V ++E+ P E T+ L
Sbjct: 175 IPTLSDLGFD---APAAEVPAAGTDVARTLLESFLDDD-VYRYEESRDYP--AEECTSRL 228
Query: 101 SPYLKFGCLSVRLFYHELKKIL--ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMK 158
S +LKFG + +R ++ L A+G + Q+ WREFY V P+
Sbjct: 229 SVHLKFGTIGIREVDKRVRDALESASGERRESVAEFRSQLAWREFYTHVLYFNPDVVTTN 288
Query: 159 GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
++W+ ++ L AW G+TGYP +DA MRQLR EG++H+ R VA FLT+ DL
Sbjct: 289 YTSYENPIEWENDDDLLAAWKRGETGYPIVDAGMRQLRAEGFMHNRVRMIVASFLTK-DL 347
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+ W G F +LL+D D A + G W W +++ Q +FR+++P+ G++ D
Sbjct: 348 LIDWRHGYEHFRDLLVDHDTANDNGGWQWAASTGTDSQPYFRIFNPMTQGERYD 401
>gi|407477681|ref|YP_006791558.1| deoxyribodipyrimidine photo-lyase [Exiguobacterium antarcticum B7]
gi|407061760|gb|AFS70950.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium antarcticum B7]
Length = 451
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 130/258 (50%), Gaps = 16/258 (6%)
Query: 16 PKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLA 75
P P T L Q + +V K+ G D F GE +A KRL++ L
Sbjct: 157 PVPYSVNLTCLQERYQTRRQNNTFMVEYFKQAGSD------VAFKPGEEQAKKRLDQFLQ 210
Query: 76 NKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLL 135
+ +E+ P+ T+++S YL+ G + +R + + ++ +K + +
Sbjct: 211 TS--LASYEEQRDVPSI--DGTSLMSRYLRTGEIGIRTIF----EAVSQKEDSKGKQTYI 262
Query: 136 GQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQL 195
++ WREFYY + P ++ N+ ++W+ +EK +AW GKTGYP +DA MRQL
Sbjct: 263 TELIWREFYYTILLHYPEAKRLPVNEQYTNIEWEEDEKGFQAWCEGKTGYPIVDAAMRQL 322
Query: 196 RLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMW-LSASAFF 254
GW+H+ R VA FLT+ DL + W++G+ F++ L+D + A N G W W S
Sbjct: 323 NTTGWMHNRLRMIVASFLTK-DLLIDWQKGERYFQQKLVDYEAASNIGGWQWAASVGTDA 381
Query: 255 HQFFRVYSPVAFGKKTDK 272
+FRV++P KK DK
Sbjct: 382 VPYFRVFNPTTQSKKFDK 399
>gi|156744316|ref|YP_001434445.1| deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
gi|156235644|gb|ABU60427.1| Deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
Length = 487
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 140/281 (49%), Gaps = 30/281 (10%)
Query: 1 MTYQKLVSVLESLPKP--KPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESS-IPLC 57
+T Q+ VL ++ P +PA +A + VP ++G+ S IP
Sbjct: 158 LTEQRRAEVLRAIEPPLLRPAPEAVA-------------DQTVPDHADLGIVVSQRIP-- 202
Query: 58 KFPGGETEALKRLEK--SLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY 115
PGGET RL LA + + + EP+T+ LSPYL+FGC++ R
Sbjct: 203 --PGGETHGAARLAAFVDLAAAHSIAGYAEGRDL--LAEPATSRLSPYLRFGCVAPRQAL 258
Query: 116 HELKKIL-ATGPHAKPPVSL---LGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
++L G + S+ +G++ WR+FYY + P+ + + W+ +
Sbjct: 259 RAALRLLDIVGDDHRTVRSIETWIGELAWRDFYYQILWHYPHVVRRSFKPQYDALAWEND 318
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+AW G+TGYP IDA M QLR E W+H+ AR VA FLT+ DL + W G+ F +
Sbjct: 319 PALFDAWKEGRTGYPIIDAAMHQLRQEAWMHNRARMIVASFLTK-DLLIDWRWGERYFMQ 377
Query: 232 LLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L+D D A N G W W + + Q +FR+++PV+ G+K D
Sbjct: 378 QLVDGDHAANNGGWQWSAGTGTDAQPYFRIFNPVSQGQKFD 418
>gi|172058000|ref|YP_001814460.1| deoxyribodipyrimidine photo-lyase [Exiguobacterium sibiricum
255-15]
gi|171990521|gb|ACB61443.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium sibiricum
255-15]
Length = 451
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 118/215 (54%), Gaps = 10/215 (4%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
F GE A KRL L N + +E+ P T+++S YL+ G + +R + +
Sbjct: 194 FAVGEETARKRLRSFLKNN--LSAYEEQRDLPAV--DGTSLMSRYLRTGEIGIRTIFDAV 249
Query: 119 KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
++ +K + L ++ WREFYY + P ++ N+ +++W+T+EK +AW
Sbjct: 250 QQ----EQDSKGKQTYLTELIWREFYYTILMHYPESKRLPVNEQYTKIEWETDEKGFKAW 305
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ GKTGYP +DA MRQL GW+H+ R VA FLT+ DL + W++G+ F++ L+D +
Sbjct: 306 AEGKTGYPIVDAAMRQLNTTGWMHNRLRMIVASFLTK-DLLVDWQKGERYFQQKLVDYEA 364
Query: 239 AMNAGNWMW-LSASAFFHQFFRVYSPVAFGKKTDK 272
A N G W W S +FRV++P KK DK
Sbjct: 365 ASNIGGWQWAASVGTDAVPYFRVFNPTTQSKKFDK 399
>gi|219847792|ref|YP_002462225.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
gi|219542051|gb|ACL23789.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
Length = 479
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 122/248 (49%), Gaps = 19/248 (7%)
Query: 29 ECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLE----KSLANKEWVRKFE 84
E I P +P + ++ L + + +F GET A LE ++AN R
Sbjct: 170 ELTAIPLPASDPLPALNDL-LPTAPTSVPRFATGETAARAALEHFIHNAIANYATARDLV 228
Query: 85 KPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFY 144
T+ LSPYL+FG LS R + P P S +G++ WREFY
Sbjct: 229 AIA--------GTSRLSPYLRFGVLSPR----QCVVAARAAPSGPGPESWIGELIWREFY 276
Query: 145 YVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHL 204
V P+ + + ++ W + AW G+TGYP +DA MRQL+ EGW+H+
Sbjct: 277 IQVLYHFPHALRGSFKPVYDRIVWPNDPALFAAWQQGRTGYPIVDAAMRQLQQEGWMHNR 336
Query: 205 ARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSP 263
AR VA FLT+ DL + W G+ F LL+D D A N G W W + + Q +FR+++P
Sbjct: 337 ARMIVASFLTK-DLLIDWRWGERHFMHLLIDGDPAANNGGWQWAAGTGTDAQPYFRIFNP 395
Query: 264 VAFGKKTD 271
V+ G+K D
Sbjct: 396 VSQGQKFD 403
>gi|386317413|ref|YP_006013577.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|410495305|ref|YP_006905151.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|417752618|ref|ZP_12400804.1| putative deoxyribodipyrimidine photo-lyase [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|323127700|gb|ADX24997.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|333771615|gb|EGL48541.1| putative deoxyribodipyrimidine photo-lyase [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|410440465|emb|CCI63093.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 474
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 100/176 (56%), Gaps = 6/176 (3%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSPYL+ G +S+R Y + ++ P + L ++ WR+FY++V PN K
Sbjct: 228 TSFLSPYLRLGMVSIRTVY----QAVSQAPASSGQAVFLKELAWRDFYHMVYVANPNQKK 283
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
+ + ++WD N +AW G+TGYP IDA M+QL GW+H+ R VA FLT+
Sbjct: 284 LAIQEAFRHLEWDENPAAFKAWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFLTK- 342
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMW-LSASAFFHQFFRVYSPVAFGKKTD 271
DL + W G++ F+E L+D D A N G W W S +FR+++PV GK+ D
Sbjct: 343 DLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFD 398
>gi|408402028|ref|YP_006859992.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|407968257|dbj|BAM61495.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
Length = 474
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 100/176 (56%), Gaps = 6/176 (3%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSPYL+ G +S+R Y + ++ P + L ++ WR+FY++V PN K
Sbjct: 228 TSFLSPYLRLGMVSIRTVY----QAVSQAPASSGQAVFLKELAWRDFYHMVYVANPNQKK 283
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
+ + ++WD N +AW G+TGYP IDA M+QL GW+H+ R VA FLT+
Sbjct: 284 LAIQEAFRHLEWDENPAAFKAWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFLTK- 342
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMW-LSASAFFHQFFRVYSPVAFGKKTD 271
DL + W G++ F+E L+D D A N G W W S +FR+++PV GK+ D
Sbjct: 343 DLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFD 398
>gi|251782896|ref|YP_002997199.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242391526|dbj|BAH81985.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 474
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 100/176 (56%), Gaps = 6/176 (3%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSPYL+ G +S+R Y + ++ P + L ++ WR+FY++V PN K
Sbjct: 228 TSFLSPYLRLGMVSIRTVY----QAVSQAPASSGQAVFLKELAWRDFYHMVYVANPNQKK 283
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
+ + ++WD N +AW G+TGYP IDA M+QL GW+H+ R VA FLT+
Sbjct: 284 LAIQEAFRHLEWDENPAAFKAWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFLTK- 342
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMW-LSASAFFHQFFRVYSPVAFGKKTD 271
DL + W G++ F+E L+D D A N G W W S +FR+++PV GK+ D
Sbjct: 343 DLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFD 398
>gi|329296060|ref|ZP_08253396.1| deoxyribodipyrimidine photolyase [Plautia stali symbiont]
Length = 477
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 111/218 (50%), Gaps = 9/218 (4%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FP GE ALK+L + + + V K+++ P T+ LSPYL G LS R H +
Sbjct: 204 FPAGEEAALKQLRQFVQQR--VEKYDQQRDIPAI--DGTSRLSPYLAIGVLSPRQCLHRI 259
Query: 119 KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYLEA 177
K + + L ++ WREFY + P K + V W NE+YL A
Sbjct: 260 LKEHPQALNNGSALVWLNELVWREFYRHLMVTFPALCKHQPFVDWTRNVSWQQNEQYLTA 319
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W GKTGYP +DA MRQL GW+H+ R A FL + DL + W EG+ F + L+D D
Sbjct: 320 WQQGKTGYPIVDAAMRQLNTLGWMHNRLRMITASFLVK-DLLIDWREGERYFMQQLIDGD 378
Query: 238 WAMNAGNWMWLSASAFFHQ---FFRVYSPVAFGKKTDK 272
A N G W W +++ +FR+++P G++ DK
Sbjct: 379 LAANNGGWQWAASTGTGTDAAPYFRIFNPTTQGERFDK 416
>gi|417927065|ref|ZP_12570453.1| putative deoxyribodipyrimidine photo-lyase [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|340764939|gb|EGR87465.1| putative deoxyribodipyrimidine photo-lyase [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
Length = 474
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 100/176 (56%), Gaps = 6/176 (3%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSPYL+ G +S+R Y + ++ P + L ++ WR+FY++V PN K
Sbjct: 228 TSFLSPYLRLGMVSIRTVY----QAVSQAPASSGQAVFLKELAWRDFYHMVYVANPNQKK 283
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
+ + ++WD N +AW G+TGYP IDA M+QL GW+H+ R VA FLT+
Sbjct: 284 LAIQEAFRHLEWDENPAAFKAWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFLTK- 342
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMW-LSASAFFHQFFRVYSPVAFGKKTD 271
DL + W G++ F+E L+D D A N G W W S +FR+++PV GK+ D
Sbjct: 343 DLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFD 398
>gi|381182363|ref|ZP_09891174.1| deoxyribodipyrimidine photolyase [Listeriaceae bacterium TTU
M1-001]
gi|380317741|gb|EIA21049.1| deoxyribodipyrimidine photolyase [Listeriaceae bacterium TTU
M1-001]
Length = 463
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 124/211 (58%), Gaps = 10/211 (4%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GE +ALK+L+ + K + +EK P +L+ +T+ LSPY++ G +S+R Y
Sbjct: 198 GEKQALKQLDTFI--KHHLHTYEKNRDFP-ALD-ATSRLSPYIRTGAISIRTVY----DA 249
Query: 122 LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
+ P+++ + + ++ WR+FY+++ + P+ ++ + ++W+TN+ + + W G
Sbjct: 250 VMQAPYSEGRETFMKELAWRDFYHMIYKENPHQKNLEIKEHYRGLNWNTNQAHFDKWKKG 309
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
+TG+P +DA MRQL GW+H+ R VA FLT+ DL W G+ FEE+L+D D A N
Sbjct: 310 QTGFPIVDAAMRQLNETGWMHNRLRMIVASFLTK-DLLTDWRLGERYFEEMLIDYDPASN 368
Query: 242 AGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
G W W +++ +FR+++P G++ D
Sbjct: 369 IGGWQWAASTGTDAVPYFRIFNPTTQGERFD 399
>gi|383763855|ref|YP_005442837.1| deoxyribodipyrimidine photolyase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381384123|dbj|BAM00940.1| deoxyribodipyrimidine photolyase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 475
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 121/235 (51%), Gaps = 11/235 (4%)
Query: 42 PTMKEMGLDESSIPLCKFPGGETEALKRLEK-SLANKEWVRKFEKPNTAPNSLEPSTTVL 100
P K+ LD+ + P FP GE EA RL + + ++ + + + P+ ST+ L
Sbjct: 180 PIPKQPHLDDDTGP---FPSGEAEAQARLRRFTTGDEAPIYAYAQARDFPDL--DSTSKL 234
Query: 101 SPYLKFGCLSVR---LFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
SPYL+FG LS R L ++ A + L ++ WR+FYY + P+ +
Sbjct: 235 SPYLRFGMLSARQAALAAYQAMDAAANAEQRTGAETWLTELIWRDFYYSILYHFPHVARG 294
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ + W+ N + AW G TGYPFIDA MRQL GW+H+ AR AVA FL + D
Sbjct: 295 CFQRAYDAIIWENNPTHFAAWCAGLTGYPFIDAAMRQLAATGWMHNRARMAVASFLVK-D 353
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
L + W G+ F + LLD D A N G W W + +FR+++P A G+K D
Sbjct: 354 LLIDWRWGEKWFMQRLLDGDLAANNGGWQWSAGVGTDAAPYFRIFNPTAQGQKFD 408
>gi|76802655|ref|YP_330750.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
gi|76558520|emb|CAI50112.1| deoxyribodipyrimidine photolyase [Natronomonas pharaonis DSM 2160]
Length = 462
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 125/239 (52%), Gaps = 11/239 (4%)
Query: 37 DEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPS 96
DE +PT+ ++G DE + L K G A RL L + + ++E+ P +
Sbjct: 167 DETTLPTLADLGFDEPTAELPK--AGTAPARGRLAAFLEDD--IYRYEEARDYPAT--EC 220
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILA---TGPHAKPPVSLLGQIYWREFYYVVGSDTPN 153
T+ LS LKFG + +R ++++ +A T + Q+ WREFY V + P
Sbjct: 221 TSRLSADLKFGTIGIRAVDKQVREAIAAAETDSERESAAEFRSQLAWREFYTHVLAFNPE 280
Query: 154 FDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
+ +DW+ + + L AW G+TGYP +DA MRQL+ E ++H+ R VA FL
Sbjct: 281 VVTENYKRYEHDIDWEDDPELLAAWKRGETGYPIVDAGMRQLQAEAYMHNRVRMIVASFL 340
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
T+ DL + W G + F + L+D D A + G W W +++ Q +FR+++P+ G++ D
Sbjct: 341 TK-DLLIDWRHGYAHFRDRLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYD 398
>gi|376004880|ref|ZP_09782483.1| deoxyribodipyrimidine photolyase, FAD-binding [Arthrospira sp. PCC
8005]
gi|375326730|emb|CCE18236.1| deoxyribodipyrimidine photolyase, FAD-binding [Arthrospira sp. PCC
8005]
Length = 474
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 132/263 (50%), Gaps = 12/263 (4%)
Query: 14 PKPKPADDAPTSLPRECQ--GILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLE 71
PKP+P D + E Q L +PT K++G S P PG ET A RL+
Sbjct: 160 PKPEPCDTLKSRGLTEAQEKAALEAGAIALPTAKDLGFIWSE-PFILEPG-ETAASDRLQ 217
Query: 72 KSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILA--TGPHAK 129
L + ++++ P T++LSP L+FG + +R + + ++I+A A+
Sbjct: 218 --LFCDRAIYEYDQGRNFPAI--DGTSLLSPALRFGAIGIRTLWQKTQEIMALTRSDEAR 273
Query: 130 PPVSLLGQ-IYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFI 188
+ Q I WREFY P + + W N+++ +AW G+TGYP +
Sbjct: 274 DHIQTWQQEIAWREFYQQALYHFPALATGAFRQPFDRFPWSDNQEHFQAWCQGRTGYPIV 333
Query: 189 DAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWL 248
DA MRQL GW+H+ R VA FLT+ DL ++W+ G+ F + L+D D A N G W W
Sbjct: 334 DAAMRQLNETGWMHNRCRMIVASFLTK-DLIINWQWGEKYFMQRLIDGDLASNNGGWQWS 392
Query: 249 SASAFFHQFFRVYSPVAFGKKTD 271
S+S + R+++P + +K D
Sbjct: 393 SSSGMDPKPLRIFNPASQAQKYD 415
>gi|289580258|ref|YP_003478724.1| deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
gi|448281497|ref|ZP_21472802.1| deoxyribodipyrimidine photolyase [Natrialba magadii ATCC 43099]
gi|289529811|gb|ADD04162.1| Deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
gi|445578544|gb|ELY32948.1| deoxyribodipyrimidine photolyase [Natrialba magadii ATCC 43099]
Length = 468
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 121/237 (51%), Gaps = 15/237 (6%)
Query: 41 VPTMKEMGLD--ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTT 98
+P+ + +G D E++IP G A +RLE A+ + ++ + A ++ T+
Sbjct: 177 LPSQEALGFDDPEATIP----DAGMEAARRRLETFCADPIYRYADQRDDPAADA----TS 228
Query: 99 VLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVS---LLGQIYWREFYYVVGSDTPNFD 155
LSP+LK+G + +R Y L + + P S Q+ WR FY V P+
Sbjct: 229 GLSPHLKWGTIGIRTVYEALDRAKSEAPDEAAADSCEEFESQLAWRAFYAHVLDTNPHTV 288
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
+ W T+ L+AW GKTGYP +DA MRQLR E ++H+ R VA FLT+
Sbjct: 289 TANYRSYENPIQWQTDAAALQAWKDGKTGYPIVDAGMRQLRAEAFMHNRLRMIVASFLTK 348
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL L W EG + F E L D D A + G W W S + Q +FR+++P+ G++ D
Sbjct: 349 -DLMLDWREGYAWFREKLADHDTASDVGGWQWASGTGTDAQPYFRIFNPMTQGERHD 404
>gi|398794137|ref|ZP_10554321.1| deoxyribodipyrimidine photolyase [Pantoea sp. YR343]
gi|398209097|gb|EJM95781.1| deoxyribodipyrimidine photolyase [Pantoea sp. YR343]
Length = 475
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 123/259 (47%), Gaps = 21/259 (8%)
Query: 16 PKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLA 75
PK D AP S+ ++ +P E D+S FP GE ALK+L
Sbjct: 175 PKARDGAPISIKKKIPAFDYPCE---------AFDDSL-----FPAGEEAALKQLRHFA- 219
Query: 76 NKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLL 135
K+ V+ + P T+ LS YL G LS R H + K + + L
Sbjct: 220 -KQAVQHYPDQRDLPAI--DGTSRLSAYLAIGVLSPRQCLHRVLKEHPDALNEGKAFTWL 276
Query: 136 GQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQ 194
++ WREFY + P K + VDW NE +L+AW GKTGYP +DA MRQ
Sbjct: 277 NELIWREFYRHLMVAFPALCKHQPFVDWTRNVDWQQNEAHLKAWQQGKTGYPIVDAAMRQ 336
Query: 195 LRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF- 253
L GW+H+ R A FL + DL + W EG+ F + L+D D A N G W W +++
Sbjct: 337 LNTLGWMHNRLRMITASFLVK-DLLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTD 395
Query: 254 FHQFFRVYSPVAFGKKTDK 272
+FR+++P G++ DK
Sbjct: 396 AAPYFRIFNPTTQGERFDK 414
>gi|448304428|ref|ZP_21494366.1| photolyase/cryptochrome [Natronorubrum sulfidifaciens JCM 14089]
gi|445590861|gb|ELY45073.1| photolyase/cryptochrome [Natronorubrum sulfidifaciens JCM 14089]
Length = 461
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 115/232 (49%), Gaps = 10/232 (4%)
Query: 49 LDESSIPLC----KFP-GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTV--LS 101
+D SIP + P G A RLE A+ + + + A EP+ V LS
Sbjct: 166 MDTESIPTTATDIELPTAGYDAASARLESFCASGIVHYRETRDDLARAVAEPTQAVSRLS 225
Query: 102 PYLKFGCLSVRLFYHELKKILAT--GPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG 159
PYL G + +R + + +L T G + ++ WRE Y + SDTP +
Sbjct: 226 PYLAVGAIGIREVWQRVTDVLETVDGRDRRNVEKYADELTWREHNYHLLSDTPTLETENY 285
Query: 160 NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLY 219
+ ++ W T+ AW G+TGYP +DA MRQL EG+IH+ R VA FLT+ L
Sbjct: 286 DDPPNEIAWRTDADEFAAWKRGETGYPLVDAGMRQLEREGYIHNRPRQVVASFLTKH-LL 344
Query: 220 LSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+ W G + F + LLD D A+NAGNW W++++ R++ PVA K D
Sbjct: 345 IDWRRGAAHFRDRLLDHDPAINAGNWQWIASTGTDSVDVRIFDPVAQLAKYD 396
>gi|354611090|ref|ZP_09029046.1| Deoxyribodipyrimidine photo-lyase [Halobacterium sp. DL1]
gi|353195910|gb|EHB61412.1| Deoxyribodipyrimidine photo-lyase [Halobacterium sp. DL1]
Length = 467
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 125/257 (48%), Gaps = 14/257 (5%)
Query: 19 ADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKE 78
AD AP P + + +P +G +E P + P T+A + ++ ++
Sbjct: 156 ADPAPEPEPDAVADVTGDE---LPDAATLGFEE---PDAEIPAAGTDAARERLEAFCERD 209
Query: 79 WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSL---L 135
V ++E P E +T+ LS LKFG L VR Y ++ + S+
Sbjct: 210 -VFRYEDARDYP--AERATSRLSADLKFGTLGVRELYERTEQAMTDADDDDERASVEEFQ 266
Query: 136 GQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQL 195
GQ+ WREFY V P + ++W + L AW G+TGYP +DA MRQL
Sbjct: 267 GQLAWREFYAQVLYFNPEVVTENFKEYAQPIEWRDDPTELRAWKDGETGYPIVDAGMRQL 326
Query: 196 RLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH 255
R E ++H+ R VA FLT+ DL + W EG + F E L+D D A + G W W +++
Sbjct: 327 RDEAYVHNRVRMLVAAFLTK-DLLVDWREGYAHFREHLVDHDTANDTGGWQWAASTGTDA 385
Query: 256 Q-FFRVYSPVAFGKKTD 271
Q +FRV++P G++ D
Sbjct: 386 QPYFRVFNPTTQGERYD 402
>gi|169236101|ref|YP_001689301.1| deoxyribodipyrimidine photo-lyase [Halobacterium salinarum R1]
gi|47117035|sp|Q9HQ46.2|PHR_HALSA RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|148793|gb|AAA72749.1| photolyase (EC 4.1.99.3) [Halobacterium salinarum]
gi|167727167|emb|CAP13953.1| deoxyribodipyrimidine photolyase [Halobacterium salinarum R1]
Length = 481
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 118/235 (50%), Gaps = 10/235 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+P+++E+G E P P T A + L + + ++E P+ E T+ L
Sbjct: 189 LPSVQELGFAE---PEAAVPDAGTAAARSLLDAFRESGDIYRYEDRRDYPH--EEPTSRL 243
Query: 101 SPYLKFGCLSVRLFYHELKKILA---TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
SP+LKFG + +R Y + + T + + +GQ+ WREFY V N
Sbjct: 244 SPHLKFGTIGIRTVYEAARAAKSDADTDDERENVAAFIGQLAWREFYAQVLYFNQNVVSE 303
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
++W + L+AW G+TGYP +DA MRQLR E ++H+ R VA FLT+ D
Sbjct: 304 NFKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAEAYMHNRVRMIVAAFLTK-D 362
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L + W G F E L D D A + G W W +++ Q +FRV++P+ G++ D
Sbjct: 363 LLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYFRVFNPMTQGERYD 417
>gi|15790367|ref|NP_280191.1| photolyase/cryptochrome [Halobacterium sp. NRC-1]
gi|10580849|gb|AAG19671.1| photolyase/cryptochrome [Halobacterium sp. NRC-1]
Length = 489
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 118/235 (50%), Gaps = 10/235 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+P+++E+G E P P T A + L + + ++E P+ E T+ L
Sbjct: 197 LPSVQELGFAE---PEAAVPDAGTAAARSLLDAFRESGDIYRYEDRRDYPH--EEPTSRL 251
Query: 101 SPYLKFGCLSVRLFYHELKKILA---TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
SP+LKFG + +R Y + + T + + +GQ+ WREFY V N
Sbjct: 252 SPHLKFGTIGIRTVYEAARAAKSDADTDDERENVAAFIGQLAWREFYAQVLYFNQNVVSE 311
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
++W + L+AW G+TGYP +DA MRQLR E ++H+ R VA FLT+ D
Sbjct: 312 NFKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAEAYMHNRVRMIVAAFLTK-D 370
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L + W G F E L D D A + G W W +++ Q +FRV++P+ G++ D
Sbjct: 371 LLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYFRVFNPMTQGERYD 425
>gi|448688386|ref|ZP_21694219.1| deoxyribodipyrimidine photolyase [Haloarcula japonica DSM 6131]
gi|445779447|gb|EMA30377.1| deoxyribodipyrimidine photolyase [Haloarcula japonica DSM 6131]
Length = 465
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 126/250 (50%), Gaps = 14/250 (5%)
Query: 27 PRECQGILHPDEHLVPTMKEMGLDE--SSIPLCKFPGGETEALKRLEKSLANKEWVRKFE 84
P + D +PT+ ++G +E + +P P G EA L L E V ++E
Sbjct: 161 PPSTDELAEVDGDALPTLADLGFEEPEADVP----PAGTDEARALLNDFL--DENVYEYE 214
Query: 85 KPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK--KILATGPHAKPPVSLLGQIYWRE 142
+ P + T+ LS +LKFG + +R Y + K A G H + Q+ WRE
Sbjct: 215 ERRDFP--ADECTSRLSAHLKFGTIGIREVYDRTQDAKEGAGGNHHESVREFQSQLAWRE 272
Query: 143 FYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIH 202
FY V P+ ++W+ +E+ L+AW G+TGYP +DA MRQLR E ++H
Sbjct: 273 FYTQVLFAHPHVVTSNYKSYENSIEWENDEELLQAWKDGETGYPIVDAGMRQLRAEAYMH 332
Query: 203 HLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVY 261
+ R VA FLT+ DL + W G F E L+D D A + G W W +++ Q +FR++
Sbjct: 333 NRVRMIVASFLTK-DLLIDWRYGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPYFRIF 391
Query: 262 SPVAFGKKTD 271
+P+ G+ D
Sbjct: 392 NPMTQGEDYD 401
>gi|300710895|ref|YP_003736709.1| deoxyribodipyrimidine photo-lyase [Halalkalicoccus jeotgali B3]
gi|448297012|ref|ZP_21487062.1| deoxyribodipyrimidine photolyase [Halalkalicoccus jeotgali B3]
gi|299124578|gb|ADJ14917.1| deoxyribodipyrimidine photo-lyase [Halalkalicoccus jeotgali B3]
gi|445580689|gb|ELY35067.1| deoxyribodipyrimidine photolyase [Halalkalicoccus jeotgali B3]
Length = 459
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 133/266 (50%), Gaps = 22/266 (8%)
Query: 13 LPKPKPADDAPTSLPRECQGILHPDE-HLVPTMKEMGLD--ESSIPLCKFPGGETEALKR 69
L + KP P S P + + PD+ +P + ++G + E S+P G A R
Sbjct: 147 LDRDKPD---PVSAP---ESVSDPDDPGGIPALSDLGFEAPEGSVPDA----GPDAAENR 196
Query: 70 LEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAK 129
LE +R++E+ P+ T+ LS LKFG + +R Y + A +
Sbjct: 197 LETFCDGP--IRRYEEDRDYPSR--GGTSRLSVDLKFGTVGIRRVYAATENAKAEAGSKE 252
Query: 130 PPVSL---LGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYP 186
S+ Q+ WREFY V PN +++W T+E+ +AW+ GKTGYP
Sbjct: 253 ERGSVEEFQSQLAWREFYTQVLYYHPNVVTKNYKTYDGEIEWRTDEEGFDAWTEGKTGYP 312
Query: 187 FIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWM 246
+DA MRQLR E W+H+ R VA FLT+ DL + W EG F + L+D D + G W
Sbjct: 313 IVDAGMRQLREESWMHNRVRMLVAAFLTK-DLLVDWREGYDWFRKHLVDHDTGNDTGGWQ 371
Query: 247 WLSASAFFHQ-FFRVYSPVAFGKKTD 271
W +++ Q +FR+++P+ G++ D
Sbjct: 372 WAASTGTDAQPYFRIFNPMTQGERYD 397
>gi|409989683|ref|ZP_11273203.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
Paraca]
gi|409939453|gb|EKN80597.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
Paraca]
Length = 474
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 132/263 (50%), Gaps = 12/263 (4%)
Query: 14 PKPKPADDAPTSLPRECQ--GILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLE 71
PKP+P ++ E Q L +PT K++G S P PG ET A RLE
Sbjct: 160 PKPEPCQRLKSTGLTEAQEKAALEAGAIALPTAKDLGFIWSE-PFILEPG-ETAASDRLE 217
Query: 72 KSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILA--TGPHAK 129
+ + ++++ P T+VLSP L+FG + +R + + ++I+A A+
Sbjct: 218 --IFCDRAIYEYDEGRNFPAI--DGTSVLSPALRFGAIGIRTLWQKTQEIMALTRSDEAR 273
Query: 130 PPVSLLGQ-IYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFI 188
+ Q + WREFY P + + W N+++ +AW G+TGYP +
Sbjct: 274 HHIQTWQQELAWREFYQQALYHFPALATGAFRQPFDRFPWSDNQEHFQAWCQGRTGYPIV 333
Query: 189 DAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWL 248
DA MRQL GW+H+ R VA FLT+ DL ++W+ G+ F + L+D D A N G W W
Sbjct: 334 DAAMRQLNETGWMHNRCRMIVASFLTK-DLIINWQWGEKYFMQTLIDGDLASNNGGWQWS 392
Query: 249 SASAFFHQFFRVYSPVAFGKKTD 271
S+S + R+++P + +K D
Sbjct: 393 SSSGMDPKPLRIFNPASQTQKYD 415
>gi|209525318|ref|ZP_03273859.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
gi|209494169|gb|EDZ94483.1| Deoxyribodipyrimidine photo-lyase [Arthrospira maxima CS-328]
Length = 474
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 131/263 (49%), Gaps = 12/263 (4%)
Query: 14 PKPKPADDAPTSLPRECQ--GILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLE 71
PKP+P D + E Q +PT K++G S P PG ET A RL+
Sbjct: 160 PKPEPCDTLKSRGLTEAQEKAAREAGAIALPTAKDLGFIWSE-PFILEPG-ETAASDRLQ 217
Query: 72 KSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILA--TGPHAK 129
L + ++++ P T++LSP L+FG + +R + + ++I+A A+
Sbjct: 218 --LFCDRAIYEYDQGRNFPAI--DGTSLLSPALRFGAIGIRTLWQKTQEIMALTRSDEAR 273
Query: 130 PPVSLLGQ-IYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFI 188
+ Q I WREFY P + + W N+++ +AW G+TGYP +
Sbjct: 274 DHIQTWQQEIAWREFYQQALYHFPALATGAFRQPFDRFPWSDNQEHFQAWCQGRTGYPIV 333
Query: 189 DAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWL 248
DA MRQL GW+H+ R VA FLT+ DL ++W+ G+ F + L+D D A N G W W
Sbjct: 334 DAAMRQLNETGWMHNRCRMIVASFLTK-DLIINWQWGEKYFMQRLIDGDLASNNGGWQWS 392
Query: 249 SASAFFHQFFRVYSPVAFGKKTD 271
S+S + R+++P + +K D
Sbjct: 393 SSSGMDPKPLRIFNPASQAQKYD 415
>gi|448357813|ref|ZP_21546508.1| deoxyribodipyrimidine photolyase [Natrialba chahannaoensis JCM
10990]
gi|445648121|gb|ELZ01083.1| deoxyribodipyrimidine photolyase [Natrialba chahannaoensis JCM
10990]
Length = 466
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 120/236 (50%), Gaps = 13/236 (5%)
Query: 41 VPTMKEMGLDESSIPLCKFPG-GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTV 99
+P+ + +G DE P P G A +RLE A+ + ++ + A ++ T+
Sbjct: 175 LPSQEALGFDE---PEANIPDTGMEAARRRLETFCADPIYRYADQRDDPAADA----TSG 227
Query: 100 LSPYLKFGCLSVRLFYHELKKILATGPHAKPPVS---LLGQIYWREFYYVVGSDTPNFDK 156
LSP+LK+G + +R Y +++ + P S Q+ WR FY V + P+
Sbjct: 228 LSPHLKWGTIGIRTVYEAVERAKSEAPDDATADSCEEFESQLAWRAFYAHVLATNPHTVT 287
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
+ W T+ L+AW G TGYP +DA MRQLR E ++H+ R VA FLT+
Sbjct: 288 TNYRSYENPIQWRTDAAALQAWKDGTTGYPIVDAGMRQLRAEAFMHNRLRMIVASFLTK- 346
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL L W EG + F E L D D A + G W W S + Q +FR+++P+ G++ D
Sbjct: 347 DLLLDWREGYAWFREKLADHDTASDVGGWQWASGTGTDAQPYFRIFNPMTQGERHD 402
>gi|423065610|ref|ZP_17054400.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis C1]
gi|406713053|gb|EKD08228.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis C1]
Length = 474
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 131/263 (49%), Gaps = 12/263 (4%)
Query: 14 PKPKPADDAPTSLPRECQ--GILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLE 71
PKP+P D + E Q +PT K++G S P PG ET A RL+
Sbjct: 160 PKPEPCDTLKSRGLTEAQEKAAREAGAIALPTAKDLGFIWSE-PFILEPG-ETAASDRLQ 217
Query: 72 KSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILA--TGPHAK 129
L + ++++ P T++LSP L+FG + +R + + ++I+A A+
Sbjct: 218 --LFCDRAIYEYDEGRNFPAI--DGTSLLSPALRFGAIGIRTLWQKTQEIMALTRSDEAR 273
Query: 130 PPVSLLGQ-IYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFI 188
+ Q I WREFY P + + W N+++ +AW G+TGYP +
Sbjct: 274 DHIQTWQQEIAWREFYQQALYHFPALATGAFRQPFDRFPWSDNQEHFQAWCQGRTGYPIV 333
Query: 189 DAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWL 248
DA MRQL GW+H+ R VA FLT+ DL ++W+ G+ F + L+D D A N G W W
Sbjct: 334 DAAMRQLNETGWMHNRCRMIVASFLTK-DLIINWQWGEKYFMQRLIDGDLASNNGGWQWS 392
Query: 249 SASAFFHQFFRVYSPVAFGKKTD 271
S+S + R+++P + +K D
Sbjct: 393 SSSGMDPKPLRIFNPASQAQKYD 415
>gi|119944756|ref|YP_942436.1| deoxyribodipyrimidine photo-lyase [Psychromonas ingrahamii 37]
gi|119863360|gb|ABM02837.1| deoxyribodipyrimidine photo-lyase type I [Psychromonas ingrahamii
37]
Length = 453
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 130/277 (46%), Gaps = 29/277 (10%)
Query: 2 TYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPG 61
+ K V + P PKPAD P+ V K + ++ +P
Sbjct: 151 AWMKEVKQTDLTPLPKPADQMPSLN--------------VSWSKNISVNYDKKSSQAWPA 196
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GET AL+RL L + + P SL+ T+ LS YLKFG +S + +E +
Sbjct: 197 GETAALRRLRHFLLQD--IEDYHHNRDIP-SLD-GTSGLSAYLKFGVISAKRCVYE---V 249
Query: 122 LATGPHA-----KPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYL 175
LA P A S + +I WREFY + P K K NK+ + W N
Sbjct: 250 LAAFPDALDAQDSSVFSWINEIVWREFYRHLMIFNPQLCKGKNFNKLADNITWSNNPDDF 309
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
+AW G+TGY +DA MRQL GW+H+ R A FLT+ L + W G++ F E L+D
Sbjct: 310 KAWCEGRTGYGLVDAAMRQLNQTGWMHNRLRMVTASFLTK-HLLIDWRWGEAYFREHLID 368
Query: 236 ADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
D A N G W W +++ Q +FR+++P+ +K D
Sbjct: 369 GDLASNNGGWQWAASTGCDAQPYFRIFNPIIQSQKFD 405
>gi|345004881|ref|YP_004807734.1| deoxyribodipyrimidine photo-lyase [halophilic archaeon DL31]
gi|344320507|gb|AEN05361.1| Deoxyribodipyrimidine photo-lyase [halophilic archaeon DL31]
Length = 498
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 135/279 (48%), Gaps = 27/279 (9%)
Query: 13 LPKPKPAD--DAPTSLPRECQGILHPDEHL-------VPTMKEMGLDESSIPLCKFPGGE 63
P P+PAD DA G E L +PT++E+G E P +
Sbjct: 159 FPAPEPADLTDANELGVDTLTGTATDGEKLDSVLRAGLPTIEELGFTE---PTAELREAG 215
Query: 64 TEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKIL- 122
TEA + ++ +E + +++ P + ++ LS ++FG + +R Y E + +
Sbjct: 216 TEAARERLRTF-REEAIFQYDSDRDYP--AKDGSSRLSEQIRFGTIGLRELYAETEAAMR 272
Query: 123 --------ATGPHAKPPV-SLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEK 173
G A+ V + Q+ WREFY V TP+ ++W +E+
Sbjct: 273 EARSRDEGEEGSDAQDNVEAFQSQLAWREFYTQVLFFTPHVVTENYKSYEEGLEWREDEE 332
Query: 174 YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELL 233
LEAW GKTGYP +DA MRQLR E W+H+ R VA FLT+ DL L W EG + F E L
Sbjct: 333 ALEAWKAGKTGYPIVDAGMRQLRAEAWMHNRLRMIVASFLTK-DLLLDWREGYAHFREKL 391
Query: 234 LDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
D D A + G W W +++ Q +FR+++P G++ D
Sbjct: 392 ADHDTANDNGGWQWAASTGTDAQPYFRIFNPTTQGERYD 430
>gi|291570180|dbj|BAI92452.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39]
Length = 474
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 132/263 (50%), Gaps = 12/263 (4%)
Query: 14 PKPKPADDAPTSLPRECQ--GILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLE 71
PKP+P ++ E Q L +PT K++G S P PG ET A RLE
Sbjct: 160 PKPEPCQRLKSTGLTEAQEKAALEAGAIALPTAKDLGFIWSE-PFILEPG-ETAASDRLE 217
Query: 72 KSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILA--TGPHAK 129
+ + ++++ P T+VLSP L+FG + +R + + ++I+A A+
Sbjct: 218 --IFCDRAIYEYDEGRNFPAI--DGTSVLSPALRFGAIGIRTLWQKTQEIIALTRSDEAR 273
Query: 130 PPVSLLGQ-IYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFI 188
+ Q + WREFY P + + W N+++ +AW G+TGYP +
Sbjct: 274 HHIQTWQQELAWREFYQQALYHFPALAIGAFRQPFDRFPWSDNQEHFQAWCQGRTGYPIV 333
Query: 189 DAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWL 248
DA MRQL GW+H+ R VA FLT+ DL ++W+ G+ F + L+D D A N G W W
Sbjct: 334 DAAMRQLNQTGWMHNRCRMIVASFLTK-DLIINWQWGEKYFMQTLIDGDLASNNGGWQWS 392
Query: 249 SASAFFHQFFRVYSPVAFGKKTD 271
S+S + R+++P + +K D
Sbjct: 393 SSSGMDPKPLRIFNPASQTQKYD 415
>gi|226941562|ref|YP_002796636.1| PhrB [Laribacter hongkongensis HLHK9]
gi|226716489|gb|ACO75627.1| PhrB [Laribacter hongkongensis HLHK9]
Length = 469
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 124/233 (53%), Gaps = 13/233 (5%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+P++ MG ++ + + G T A L + L + + + P +L+ +T+ L
Sbjct: 186 LPSLASMGFTDTGLAALGWQAGSTGAQAALAQFLPR---LPLYHEERDFP-ALD-ATSRL 240
Query: 101 SPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGN 160
SP+L+FG LSVR LAT + + L ++ WR+FY+ V P +
Sbjct: 241 SPHLRFGTLSVRQLVR-----LATDAGHEGAQAWLNELVWRDFYHQVLWHRPQLAQGHAF 295
Query: 161 K-ICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLY 219
K + Q+DW + AW+ G+TGYP +DA MRQLR GW+H+ R A FL + DL
Sbjct: 296 KPVYDQLDWPGEADHFAAWTEGRTGYPLVDAAMRQLRQTGWMHNRLRMICASFLAK-DLL 354
Query: 220 LSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L W G++ F E LLD D+A N G W W +++ Q +FR+++PV+ +K D
Sbjct: 355 LDWRLGEAWFAECLLDFDFAANNGGWQWAASTGCDAQPYFRIFNPVSQSRKFD 407
>gi|347758242|ref|YP_004865804.1| DNA photolyase family protein [Micavibrio aeruginosavorus ARL-13]
gi|347590760|gb|AEP09802.1| DNA photolyase family protein [Micavibrio aeruginosavorus ARL-13]
Length = 476
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 128/253 (50%), Gaps = 14/253 (5%)
Query: 22 APTSLPRECQGILHPDEHLVPTMK-EMGLDESSIPLCKFPGGETEALKRLEKSLANKEWV 80
PT PR Q + D L+P++K + G + P GE A +RL + L + +
Sbjct: 171 VPTFFPRLKQSLHIDDLDLLPSIKWDKGFHDIWTP------GEHGARERLGQFLDHG--L 222
Query: 81 RKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVS-LLGQIY 139
+ +++ P+ + + LSP+L FG +S R +H ++ + P + L ++
Sbjct: 223 KGYKEGRNHPD--RENVSRLSPHLHFGEISPRTAWHAVRHAMEADPTIETDGDCFLSELG 280
Query: 140 WREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEG 199
WREF Y + P+ WD N+K L AW GKTGYP +DA MRQL G
Sbjct: 281 WREFSYSLLYTHPDLPTQPLQHKFAGFPWDKNDKALRAWQMGKTGYPIVDAGMRQLWQTG 340
Query: 200 WIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSA-SAFFHQFF 258
W+H+ R VA FL + DL L W G+ F + L+DAD A NA +W W++ A +F
Sbjct: 341 WMHNRVRMIVASFLIK-DLMLPWTAGEEWFWDTLVDADLANNAASWQWVAGCGADAAPYF 399
Query: 259 RVYSPVAFGKKTD 271
R+++PV G K D
Sbjct: 400 RIFNPVTQGTKFD 412
>gi|344211748|ref|YP_004796068.1| deoxyribodipyrimidine photolyase [Haloarcula hispanica ATCC 33960]
gi|343783103|gb|AEM57080.1| deoxyribodipyrimidine photolyase [Haloarcula hispanica ATCC 33960]
Length = 465
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 122/239 (51%), Gaps = 12/239 (5%)
Query: 37 DEHLVPTMKEMGLDESSIPLCKFPG-GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP 95
D +PT+ ++G DE P P G EA L+ LA E V ++E+ P +
Sbjct: 171 DGDALPTLADLGFDE---PEADVPAAGTDEARALLDDFLA--ENVYEYEERRDFP--ADE 223
Query: 96 STTVLSPYLKFGCLSVRLFYH--ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPN 153
T+ LS +LKFG + +R Y E K G + Q+ WREFY V P+
Sbjct: 224 CTSRLSAHLKFGTIGIREVYDRTEDAKEGTGGDRRESVREFQSQLAWREFYTQVLFAHPH 283
Query: 154 FDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
++W+ +E+ L+AW G+TGYP +DA MRQLR E ++H+ R VA FL
Sbjct: 284 VVSSNYKSYENPIEWENDEELLQAWKDGETGYPIVDAGMRQLREEAYMHNRVRMIVASFL 343
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
T+ DL + W G F E L+D D A + G W W +++ Q +FR+++P+ G+ D
Sbjct: 344 TK-DLLIDWRHGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGEDYD 401
>gi|297585056|ref|YP_003700836.1| deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
gi|297143513|gb|ADI00271.1| Deoxyribodipyrimidine photo-lyase [Bacillus selenitireducens MLS10]
Length = 474
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 110/211 (52%), Gaps = 8/211 (3%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GE A +RLE+ + ++ + + + P T+ LSPYLK G LSV YH +
Sbjct: 204 GEDHAHERLEQFVTDR--LTHYGESRDFPAV--AGTSRLSPYLKTGVLSVAQVYHAAYPL 259
Query: 122 LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
G A V+ + ++ WR+FY ++ N + + + W+ +++ LE W G
Sbjct: 260 FEKGDDA--AVTFIKELAWRDFYTMIHYHFENLRNQEFQEKYRTLSWNEDDELLEYWKQG 317
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
+TG+P IDA MRQL GW+H+ R A A FLT+ D + W EG+ F E L+D D A N
Sbjct: 318 QTGFPLIDAAMRQLNTTGWMHNRLRMATASFLTK-DYRIDWREGERYFAEKLIDYDEASN 376
Query: 242 AGNWMW-LSASAFFHQFFRVYSPVAFGKKTD 271
G W W S +FRV++PV K+ D
Sbjct: 377 TGGWQWAASVGTDAVPYFRVFNPVRQSKRFD 407
>gi|393796398|ref|ZP_10379762.1| deoxyribodipyrimidine photo-lyase [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 318
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 111/207 (53%), Gaps = 14/207 (6%)
Query: 58 KFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHE 117
K GG ALK L+ K + + + P TT LS +++FG +SVR Y
Sbjct: 61 KMEGGRRNALKILKNISEYKNYQKTRDYPGL------DKTTKLSAHIRFGTISVREAYQA 114
Query: 118 LKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEA 177
+K+ L L+ Q+YWREF+ V PN K ++ W TN++
Sbjct: 115 IKENLGIDH------ILINQLYWREFFTYVLHHFPNSKSETFKKKFRKIPWSTNKQEYHT 168
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W G+TG+P +DA MRQL G++H+ R VA FLT+ D+++ W+ G+ F E L+D D
Sbjct: 169 WCKGETGFPIVDAGMRQLNKTGFMHNRVRMIVASFLTK-DMHIDWKLGERYFAEKLVDYD 227
Query: 238 WAMNAGNWMWLSASAFFH-QFFRVYSP 263
A+NAGNW W +++ Q+FR+++P
Sbjct: 228 PAVNAGNWQWAASTGCDAVQYFRIFNP 254
>gi|94994739|ref|YP_602837.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750]
gi|94548247|gb|ABF38293.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750]
Length = 477
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 99/176 (56%), Gaps = 6/176 (3%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSP+L+ G + +R YH +++ P++ + L ++ WR+FY +V P+
Sbjct: 236 TSRLSPFLRIGAIGIRTVYHAVRQ----APNSLGQATFLKELAWRDFYNMVYVAYPDQKT 291
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K Q++W N + + W GKTGYP +DA M QL+ GW+H+ R VA FLT+
Sbjct: 292 QPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTK- 350
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL W G+ F++ L+D D A N G W W +++ +FR+++PV GK+ D
Sbjct: 351 DLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 406
>gi|383480261|ref|YP_005389155.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS15252]
gi|383494243|ref|YP_005411919.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS1882]
gi|378928251|gb|AFC66457.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS15252]
gi|378929970|gb|AFC68387.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS1882]
Length = 469
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 99/176 (56%), Gaps = 6/176 (3%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSP+L+ G + +R YH +++ P++ + L ++ WR+FY +V P+
Sbjct: 228 TSRLSPFLRIGAIGIRTVYHAVRQ----APNSLGQATFLKELAWRDFYNMVYVAYPDQKT 283
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K Q++W N + + W GKTGYP +DA M QL+ GW+H+ R VA FLT+
Sbjct: 284 QPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTK- 342
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL W G+ F++ L+D D A N G W W +++ +FR+++PV GK+ D
Sbjct: 343 DLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 398
>gi|71903837|ref|YP_280640.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180]
gi|71802932|gb|AAX72285.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180]
Length = 477
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 99/176 (56%), Gaps = 6/176 (3%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSP+L+ G + +R YH +++ P++ + L ++ WR+FY +V P+
Sbjct: 236 TSRLSPFLRIGAIGIRTVYHAVRQ----APNSLGQATFLKELAWRDFYNMVYVAYPDQKT 291
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K Q++W N + + W GKTGYP +DA M QL+ GW+H+ R VA FLT+
Sbjct: 292 QPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTK- 350
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL W G+ F++ L+D D A N G W W +++ +FR+++PV GK+ D
Sbjct: 351 DLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 406
>gi|15675407|ref|NP_269581.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes SF370]
gi|71911049|ref|YP_282599.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005]
gi|410680903|ref|YP_006933305.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes A20]
gi|13622594|gb|AAK34302.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
M1 GAS]
gi|71853831|gb|AAZ51854.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005]
gi|395454290|dbj|BAM30629.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes M1 476]
gi|409693492|gb|AFV38352.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes A20]
Length = 469
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 99/176 (56%), Gaps = 6/176 (3%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSP+L+ G + +R YH +++ P++ + L ++ WR+FY +V P+
Sbjct: 228 TSRLSPFLRIGAIGIRTVYHAVRQ----APNSLGQATFLKELAWRDFYNMVYVAYPDQKT 283
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K Q++W N + + W GKTGYP +DA M QL+ GW+H+ R VA FLT+
Sbjct: 284 QPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTK- 342
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL W G+ F++ L+D D A N G W W +++ +FR+++PV GK+ D
Sbjct: 343 DLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 398
>gi|19746457|ref|NP_607593.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS8232]
gi|306827047|ref|ZP_07460345.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC
10782]
gi|19748660|gb|AAL98092.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
MGAS8232]
gi|304430793|gb|EFM33804.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC
10782]
Length = 469
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 99/176 (56%), Gaps = 6/176 (3%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSP+L+ G + +R YH +++ P++ + L ++ WR+FY +V P+
Sbjct: 228 TSRLSPFLRIGAIGIRTVYHAVRQ----APNSLGQATFLKELAWRDFYNMVYVAYPDQKT 283
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K Q++W N + + W GKTGYP +DA M QL+ GW+H+ R VA FLT+
Sbjct: 284 QPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTK- 342
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL W G+ F++ L+D D A N G W W +++ +FR+++PV GK+ D
Sbjct: 343 DLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 398
>gi|229918519|ref|YP_002887165.1| deoxyribodipyrimidine photo-lyase [Exiguobacterium sp. AT1b]
gi|229469948|gb|ACQ71720.1| Deoxyribodipyrimidine photo-lyase [Exiguobacterium sp. AT1b]
Length = 450
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 114/213 (53%), Gaps = 14/213 (6%)
Query: 62 GETEALKRLEKSLANK--EWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
GETEA KRL + + ++ ++ K + P+ A T+ LSPYL+ G LS+R ++
Sbjct: 196 GETEAKKRLTRFVNDRMVDYDEKRDIPSIA------GTSRLSPYLRTGVLSIRTITEQV- 248
Query: 120 KILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
+ +K + ++ WREFYY+V + N ++W+ NE+ E W
Sbjct: 249 ---LSARQSKGRDTYYDELLWREFYYMVMAKFHGLKDQPFNDKYKSIEWEDNEEQFEKWC 305
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
+G+TGYP +DA MRQL GW+H+ R VA FL++ L L W +G+ FE+ L+D + A
Sbjct: 306 NGETGYPIVDAAMRQLNETGWMHNRLRMIVASFLSKH-LLLDWRKGERYFEQKLIDYEAA 364
Query: 240 MNAGNWMW-LSASAFFHQFFRVYSPVAFGKKTD 271
N G W W S +FR+++P ++ D
Sbjct: 365 SNIGGWQWAASVGTDAVPYFRIFNPTTQSERFD 397
>gi|94544269|gb|ABF34317.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10270]
Length = 477
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 99/176 (56%), Gaps = 6/176 (3%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSP+L+ G + +R YH +++ P++ + L ++ WR+FY +V P+
Sbjct: 236 TSRLSPFLRIGAIGIRTVYHAVRQ----APNSLGQATFLKELAWRDFYNMVYVAYPDQKT 291
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K Q++W N + + W GKTGYP +DA M QL+ GW+H+ R VA FLT+
Sbjct: 292 QPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTK- 350
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL W G+ F++ L+D D A N G W W +++ +FR+++PV GK+ D
Sbjct: 351 DLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 406
>gi|257877829|ref|ZP_05657482.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC20]
gi|257811995|gb|EEV40815.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC20]
Length = 473
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 115/212 (54%), Gaps = 10/212 (4%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GE A K+L+ + + + +EK P+ T+ LSP+L FG +S+R + + +
Sbjct: 206 GEDYAHKQLQAFVQKR--LAAYEKDRDIPSI--KGTSRLSPFLSFGQISIRKVWAACQGM 261
Query: 122 LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
P + + L ++ WR+FY+++ P + + +DW NE+ L W G
Sbjct: 262 ----PSSTGKATFLKELAWRDFYHMIYFSHPEQKNYELIEKYRNMDWRKNEEELTKWQAG 317
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
+TGYP IDA MRQL GW+H+ R VA FLT+ DL + W +G++ F L+D D A N
Sbjct: 318 QTGYPIIDAAMRQLNQTGWMHNRLRMIVASFLTK-DLLIDWRQGEAYFARQLIDYDAASN 376
Query: 242 AGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDK 272
G W W +++ +FR+++P+ GKK DK
Sbjct: 377 IGGWQWAASTGTDAVPYFRIFNPITQGKKFDK 408
>gi|81298923|ref|YP_399131.1| deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
PCC 7942]
gi|79621|pir||S00757 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) [validated] -
Synechococcus sp. (Anacystis nidulans)
gi|48425154|pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans
gi|48425155|pdb|1OWM|A Chain A, Data1:dna Photolyase RECEIVED X-Rays Dose 1.2 Exp15
PhotonsMM2
gi|48425156|pdb|1OWN|A Chain A, Data3:dna Photolyase RECEIVED X-Rays Dose 4.8 Exp15
PhotonsMM2
gi|48425157|pdb|1OWO|A Chain A, Data4:photoreduced Dna Photolyase RECEIVED X-Rays Dose
1.2 Exp15 PhotonsMM2
gi|48425158|pdb|1OWP|A Chain A, Data6:photoreduced Dna Pholyase RECEIVED X-Rays Dose 4.8
Exp15 PhotonsMM2
gi|157833609|pdb|1QNF|A Chain A, Structure Of Photolyase
gi|580717|emb|CAA30190.1| unnamed protein product [Synechococcus elongatus PCC 6301]
gi|81167804|gb|ABB56144.1| Deoxyribodipyrimidine photo-lyase type I [Synechococcus elongatus
PCC 7942]
Length = 484
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 130/273 (47%), Gaps = 25/273 (9%)
Query: 11 ESLPKPKPADDAPTSL----PRECQGILHPDEHLVPTMKEMGLD-ESSIPLCKFPGGETE 65
++ PKP P PT L P + I +PT+K++G D + P+ GET
Sbjct: 157 QAQPKPTPVA-TPTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEP---GETA 212
Query: 66 ALKRLE----KSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVR--LFYHELK 119
A+ RL+ +++A+ + R F E T+ LSP LKFG + +R
Sbjct: 213 AIARLQEFCDRAIADYDPQRNFPA--------EAGTSGLSPALKFGAIGIRQAWQAASAA 264
Query: 120 KILATGPHAKPPVSLLGQ-IYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
L+ A+ + + Q + WREFY P+ + Q W+ E AW
Sbjct: 265 HALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAW 324
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ +TGYP +DA MRQL GW+H+ R VA FLT+ DL + W G+ F + L+D D
Sbjct: 325 TQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTK-DLIIDWRRGEQFFMQHLVDGDL 383
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
A N G W W ++S + R+++P + KK D
Sbjct: 384 AANNGGWQWSASSGMDPKPLRIFNPASQAKKFD 416
>gi|58176791|pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176792|pdb|1TEZ|B Chain B, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176793|pdb|1TEZ|C Chain C, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
gi|58176794|pdb|1TEZ|D Chain D, Complex Between Dna And The Dna Photolyase From Anacystis
Nidulans
Length = 474
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 130/273 (47%), Gaps = 25/273 (9%)
Query: 11 ESLPKPKPADDAPTSL----PRECQGILHPDEHLVPTMKEMGLD-ESSIPLCKFPGGETE 65
++ PKP P PT L P + I +PT+K++G D + P+ GET
Sbjct: 156 QAQPKPTPVA-TPTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEP---GETA 211
Query: 66 ALKRLE----KSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVR--LFYHELK 119
A+ RL+ +++A+ + R F E T+ LSP LKFG + +R
Sbjct: 212 AIARLQEFCDRAIADYDPQRNFPA--------EAGTSGLSPALKFGAIGIRQAWQAASAA 263
Query: 120 KILATGPHAKPPVSLLGQ-IYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
L+ A+ + + Q + WREFY P+ + Q W+ E AW
Sbjct: 264 HALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAW 323
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ +TGYP +DA MRQL GW+H+ R VA FLT+ DL + W G+ F + L+D D
Sbjct: 324 TQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTK-DLIIDWRRGEQFFMQHLVDGDL 382
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
A N G W W ++S + R+++P + KK D
Sbjct: 383 AANNGGWQWSASSGMDPKPLRIFNPASQAKKFD 415
>gi|443310722|ref|ZP_21040364.1| deoxyribodipyrimidine photolyase [Synechocystis sp. PCC 7509]
gi|442779247|gb|ELR89498.1| deoxyribodipyrimidine photolyase [Synechocystis sp. PCC 7509]
Length = 476
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 138/273 (50%), Gaps = 27/273 (9%)
Query: 13 LPKPKPADDAPTSLPRECQGILHPDEHL--------VPTMKEMGLD-ESSIPLCKFPGGE 63
L KPK P + ++ G+ +++L +PT K++G + E+ + + GE
Sbjct: 158 LSKPKAE---PVAALKDLTGLTAAEKNLAIKAGVIALPTAKDLGFNWENELVIAP---GE 211
Query: 64 TEALKRLEK--SLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
T A ++LE+ LA E+ + P T+ LS LKFG + +R + K+
Sbjct: 212 TAATQKLEEFTYLAINEYKEQRNFPAVN------GTSQLSAALKFGVIGIRTVWAATKEA 265
Query: 122 LATGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
L + S++G ++ WREFY + P + ++ +D NEKY +AW
Sbjct: 266 LENSRSDETNTSIVGWQQELAWREFYQHAMYNFPELETGAYREVFKNFPYDNNEKYFQAW 325
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
GKTGYP +DA MRQ+ GW+H+ R VA FLT+ DL ++ + G+ F + L+D D
Sbjct: 326 CEGKTGYPIVDAAMRQMNELGWMHNRCRMIVASFLTK-DLIINPQLGEKYFYQHLIDGDL 384
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+ N G W W ++S + R+++P + +K D
Sbjct: 385 SANNGGWQWSASSGMDPKPIRIFNPASQAQKFD 417
>gi|21910695|ref|NP_664963.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS315]
gi|28895615|ref|NP_801965.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes SSI-1]
gi|21904898|gb|AAM79766.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
MGAS315]
gi|28810864|dbj|BAC63798.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
SSI-1]
Length = 469
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 99/176 (56%), Gaps = 6/176 (3%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSP+L+ G + +R YH +++ P++ + L ++ WR+FY +V P+
Sbjct: 228 TSRLSPFLRIGAIGIRTVYHAVRQ----APNSLGQATFLKELAWRDFYNMVYVAYPDQKT 283
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K Q++W N + + W GKTGYP +DA M QL+ GW+H+ R VA FLT+
Sbjct: 284 QPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTK- 342
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL W G+ F++ L+D D A N G W W +++ +FR+++PV GK+ D
Sbjct: 343 DLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 398
>gi|386080190|ref|YP_005993715.1| deoxyribodipyrimidine photo-lyase PhrB [Pantoea ananatis PA13]
gi|354989371|gb|AER33495.1| deoxyribodipyrimidine photo-lyase PhrB [Pantoea ananatis PA13]
Length = 475
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 125/264 (47%), Gaps = 21/264 (7%)
Query: 11 ESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRL 70
E +P PK + AP P+ +P ++ I FP GE A+KRL
Sbjct: 170 ECVPAPKAREGAPLKEPKSLPPFDYP--------------KADIDTSLFPPGEQAAVKRL 215
Query: 71 EKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKP 130
+ K+ V + K P +L+ ST+ LS YL G LS R H + + P
Sbjct: 216 REFA--KQAVLDYAKQRDLP-ALD-STSRLSVYLSTGVLSPRQCLHRILHEQPKALESSP 271
Query: 131 PVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFID 189
+ ++ WREFY + P K + V W N + +AW GKTGYP +D
Sbjct: 272 AAVWINELIWREFYRHLIVAHPRLCKHQPFVHWTRNVAWQRNSAHFDAWKAGKTGYPIVD 331
Query: 190 AIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLS 249
A MRQ++ GW+H+ R A FL + DL + W EG+ F + L+D D A N G W W +
Sbjct: 332 AAMRQMQTIGWMHNRLRMITASFLVK-DLLIDWREGERYFMQQLIDGDLAANNGGWQWAA 390
Query: 250 ASAF-FHQFFRVYSPVAFGKKTDK 272
++ +FR+++P G++ DK
Sbjct: 391 STGTDAAPYFRIFNPTTQGERFDK 414
>gi|386363038|ref|YP_006072369.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes Alab49]
gi|421892494|ref|ZP_16323147.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes NS88.2]
gi|350277447|gb|AEQ24815.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes Alab49]
gi|379981746|emb|CCG26869.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes NS88.2]
Length = 469
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 99/176 (56%), Gaps = 6/176 (3%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSP+L+ G + +R YH +++ P++ + L ++ WR+FY +V P+
Sbjct: 228 TSRLSPFLRIGAIGIRTVYHAVRQ----APNSLGQATFLKELAWRDFYNMVYVAYPDQKT 283
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K Q++W N + + W GKTGYP +DA M QL+ GW+H+ R VA FLT+
Sbjct: 284 QPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTK- 342
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL W G+ F++ L+D D A N G W W +++ +FR+++PV GK+ D
Sbjct: 343 DLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 398
>gi|56807956|ref|ZP_00365772.1| COG0415: Deoxyribodipyrimidine photolyase [Streptococcus pyogenes
M49 591]
Length = 381
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 99/177 (55%), Gaps = 6/177 (3%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
T+ LSP+L+ G + +R YH +++ P++ + L ++ WR+FY +V P+
Sbjct: 156 GTSRLSPFLRIGAIGIRTVYHAVRQ----APNSLGQATFLKELAWRDFYNMVYVAYPDQK 211
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
K Q++W N + + W GKTGYP +DA M QL+ GW+H+ R VA FLT+
Sbjct: 212 TQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTK 271
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTD 271
DL W G+ F++ L+D D A N G W W +++ +FR+++PV GK+ D
Sbjct: 272 -DLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 327
>gi|257868228|ref|ZP_05647881.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC30]
gi|257874499|ref|ZP_05654152.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC10]
gi|257802342|gb|EEV31214.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC30]
gi|257808663|gb|EEV37485.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC10]
Length = 469
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 116/212 (54%), Gaps = 10/212 (4%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GE A K+L+ + + + +EK P+ T+ LSP+L FG +S+R + +++
Sbjct: 202 GEDYAHKQLQAFVQKR--LAAYEKDRDIPSI--KGTSRLSPFLSFGQISIRKVWAACQEM 257
Query: 122 LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
P + + L ++ WR+FY+++ P + + +DW +E+ L W G
Sbjct: 258 ----PSSTGKATFLKELAWRDFYHMIYFTHPEQKNYELIEKYRNMDWQKDEEALNKWQAG 313
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
+TGYP IDA MRQL GW+H+ R VA FLT+ DL + W +G++ F L+D D A N
Sbjct: 314 QTGYPIIDAAMRQLNQTGWMHNRLRMIVASFLTK-DLLIDWRQGEAYFARQLIDYDAASN 372
Query: 242 AGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDK 272
G W W +++ +FR+++P+ GKK DK
Sbjct: 373 IGGWQWAASTGTDAVPYFRIFNPITQGKKFDK 404
>gi|386015078|ref|YP_005933356.1| deoxyribodipyrimidine photo-lyase PhrB [Pantoea ananatis AJ13355]
gi|327393138|dbj|BAK10560.1| deoxyribodipyrimidine photo-lyase PhrB [Pantoea ananatis AJ13355]
Length = 475
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 125/264 (47%), Gaps = 21/264 (7%)
Query: 11 ESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRL 70
E +P PK + AP P+ +P ++ I FP GE A+KRL
Sbjct: 170 ECVPAPKAREGAPLKEPKSLPPFDYP--------------KADIDTSLFPPGEQAAVKRL 215
Query: 71 EKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKP 130
+ K+ V + K P +L+ ST+ LS YL G LS R H + + P
Sbjct: 216 REFA--KQAVLDYAKQRDLP-ALD-STSRLSVYLSTGVLSPRQCLHRILHEQPKALESSP 271
Query: 131 PVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFID 189
+ ++ WREFY + P K + V W N + +AW GKTGYP +D
Sbjct: 272 AAVWINELIWREFYRHLIVAHPRLCKHQPFVHWTRNVAWQRNSAHFDAWKAGKTGYPIVD 331
Query: 190 AIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLS 249
A MRQ++ GW+H+ R A FL + DL + W EG+ F + L+D D A N G W W +
Sbjct: 332 AAMRQMQTIGWMHNRLRMITASFLVK-DLLIDWREGERYFMQQLIDGDLAANNGGWQWAA 390
Query: 250 ASAF-FHQFFRVYSPVAFGKKTDK 272
++ +FR+++P G++ DK
Sbjct: 391 STGTDAAPYFRIFNPTTQGERFDK 414
>gi|448666718|ref|ZP_21685363.1| deoxyribodipyrimidine photolyase [Haloarcula amylolytica JCM 13557]
gi|445771849|gb|EMA22905.1| deoxyribodipyrimidine photolyase [Haloarcula amylolytica JCM 13557]
Length = 465
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 120/238 (50%), Gaps = 10/238 (4%)
Query: 37 DEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPS 96
D +PT+ ++G DE P P T+ + L + E V ++E+ P +
Sbjct: 171 DGDALPTLADLGFDE---PEADVPAAGTDEARALLDDFLD-ENVYEYEERRDFP--ADEC 224
Query: 97 TTVLSPYLKFGCLSVRLFYH--ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
T+ LS +LKFG + +R Y E K G + Q+ WREFY V P+
Sbjct: 225 TSRLSAHLKFGTIGIREVYDRTEDAKEGTGGDRRESVREFQSQLAWREFYTQVLFAHPHV 284
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
++W+ +E+ L+AW G+TGYP +DA MRQLR E ++H+ R VA FLT
Sbjct: 285 VSSNYKSYENPIEWENDEELLQAWKDGETGYPIVDAGMRQLREEAYMHNRVRMIVASFLT 344
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+ DL + W G F E L+D D A + G W W +++ Q +FR+++P+ G+ D
Sbjct: 345 K-DLLVDWRHGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGEDYD 401
>gi|261213071|ref|ZP_05927355.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC341]
gi|260838136|gb|EEX64813.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC341]
Length = 469
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 103/181 (56%), Gaps = 11/181 (6%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+VLSPYL G LS R L + + G ++ L ++ WREFY + + PN K
Sbjct: 236 TSVLSPYLAIGALSARQCVARLYRESSMGALSEGAQVWLSELIWREFYQHLVAIEPNISK 295
Query: 157 MK-----GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVAC 211
+ G+++ WD NEK+ + W G TGYP +DA MRQL GW+H+ R VA
Sbjct: 296 SRDFHEWGSRLEW---WDDNEKF-QRWCEGTTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351
Query: 212 FLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKT 270
FLT+ DL++ W G+ F L+D D+A N G W W +++ Q +FR+++PV+ G+K
Sbjct: 352 FLTK-DLHIDWRWGERYFMSKLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKF 410
Query: 271 D 271
D
Sbjct: 411 D 411
>gi|428773120|ref|YP_007164908.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium stanieri PCC 7202]
gi|428687399|gb|AFZ47259.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium stanieri PCC 7202]
Length = 486
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 123/244 (50%), Gaps = 8/244 (3%)
Query: 22 APTSLPRECQGILHPDEHLVPTMKEMGLDE---SSIPLCKFPGGETEALKRLEKSLANKE 78
P+SLP + I D +PT+ ++GL+E + F GGETEA+KRL+ L +
Sbjct: 173 TPSSLPPLPKNI---DIGKIPTLSDLGLEEFTKDDRGVLTFMGGETEAIKRLQYYLWETD 229
Query: 79 WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQI 138
+ ++K + S+ SP+L GCLS RL Y E++K L+ ++
Sbjct: 230 NISNYKKTRNGMLGGDYSSK-FSPWLAQGCLSPRLIYTEIEKYEQERVKNDSTYWLIFEL 288
Query: 139 YWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLE 198
WR+F+ N K Q+ W N+ E W GKTGYP IDA MR+L+
Sbjct: 289 LWRDFFRFTCLKYGNSVFHKSGLQNIQIPWQENQNLFELWCQGKTGYPLIDANMRELKAT 348
Query: 199 GWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFF 258
G++ + R VA FLT+ +L ++W+ G FE LL+D D N GNW + + + F
Sbjct: 349 GFMSNRGRQNVASFLTK-NLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGVGNDARGF 407
Query: 259 RVYS 262
R ++
Sbjct: 408 RYFN 411
>gi|378768089|ref|YP_005196559.1| deoxyribodipyrimidine photo-lyase [Pantoea ananatis LMG 5342]
gi|365187572|emb|CCF10522.1| deoxyribodipyrimidine photo-lyase [Pantoea ananatis LMG 5342]
Length = 475
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 125/264 (47%), Gaps = 21/264 (7%)
Query: 11 ESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRL 70
E +P PK + AP P+ +P ++ I FP GE A+KRL
Sbjct: 170 ECVPAPKAREGAPLKEPKSLPPFDYP--------------KADIDTSLFPPGEQAAVKRL 215
Query: 71 EKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKP 130
+ K+ V + K P +L+ ST+ LS YL G LS R H + + P
Sbjct: 216 REFA--KQAVLDYAKQRDLP-ALD-STSRLSVYLSTGVLSPRQCLHRILHEQPKALESSP 271
Query: 131 PVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFID 189
+ ++ WREFY + P K + V W N + +AW GKTGYP +D
Sbjct: 272 AAVWINELIWREFYRHLIVAHPRLCKHQPFVHWTRNVAWQRNSVHFDAWKAGKTGYPIVD 331
Query: 190 AIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLS 249
A MRQ++ GW+H+ R A FL + DL + W EG+ F + L+D D A N G W W +
Sbjct: 332 AAMRQMQTIGWMHNRLRMITASFLVK-DLLIDWREGERYFMQQLIDGDLAANNGGWQWAA 390
Query: 250 ASAF-FHQFFRVYSPVAFGKKTDK 272
++ +FR+++P G++ DK
Sbjct: 391 STGTDAAPYFRIFNPTTQGERFDK 414
>gi|349701797|ref|ZP_08903426.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter europaeus LMG
18494]
Length = 466
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 110/211 (52%), Gaps = 9/211 (4%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GE A RL+ +A + V + P +P+T+ LSPYL+FG +S R +H ++ +
Sbjct: 208 GEAAAHARLDAFVAER--VHGYATQRELP--AQPATSGLSPYLRFGHVSPRQVWHAVETL 263
Query: 122 LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
GP + L ++ WR+F + D P + W + L AW G
Sbjct: 264 ---GPGDQDSACFLSEVGWRDFAHATLFDFPGMGTGNLRPEYDNMPWRHDPVALRAWQKG 320
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
KTGYP IDA MR+L GW+H+ R VA FLT+ L L W G++ F + L+DAD A N
Sbjct: 321 KTGYPIIDAGMRELWHTGWMHNRVRMVVASFLTK-HLLLDWRVGEAWFADTLVDADAASN 379
Query: 242 AGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
NW W++ +FRV++PVA G+K D
Sbjct: 380 PFNWQWVAGCGLDAAPYFRVFNPVAQGEKFD 410
>gi|329764714|ref|ZP_08256309.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329138764|gb|EGG43005.1| Deoxyribodipyrimidine photolyase [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 451
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 111/207 (53%), Gaps = 14/207 (6%)
Query: 58 KFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHE 117
K GG ALK L N + ++K P TT LS +++FG +SVR Y
Sbjct: 194 KMEGGRRNALK----ILKNISEYKNYQKTRDYPGL--DKTTKLSAHIRFGTISVREAYQA 247
Query: 118 LKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEA 177
+K+ L +L+ Q+YWREF+ V PN K ++ W TN++
Sbjct: 248 IKENLGIDH------TLINQLYWREFFTYVLHHFPNSKSRTFKKKFRKIPWSTNKQEYHT 301
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W G+TG+P +DA MRQL G++H+ R VA FLT+ D+++ W+ G+ F E L+D D
Sbjct: 302 WCKGETGFPIVDAGMRQLNKTGFMHNRVRMIVASFLTK-DMHIDWKLGERYFAEKLVDYD 360
Query: 238 WAMNAGNWMWLSASAFFHQ-FFRVYSP 263
A+NAGNW W +++ +FR+++P
Sbjct: 361 PAVNAGNWQWAASTGCDAVPYFRIFNP 387
>gi|163849034|ref|YP_001637078.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222527000|ref|YP_002571471.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
gi|163670323|gb|ABY36689.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222450879|gb|ACM55145.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
Length = 479
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 115/228 (50%), Gaps = 18/228 (7%)
Query: 49 LDESSIPLCKFPGGETEALKRLEK----SLANKEWVRKFEKPNTAPNSLEPSTTVLSPYL 104
L ++ L +FP GE AL+ LE+ LA+ R T+ LSPYL
Sbjct: 189 LPDAPATLPRFPAGEAVALEALERFVRGPLASYAQGRDLMA--------VAGTSRLSPYL 240
Query: 105 KFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICC 164
+ G LS R + P P S +G++ WR+FY V P+ +
Sbjct: 241 RLGVLSPR----QCVAAALAAPPGPGPESWIGELIWRDFYVQVLYHFPHALRGSFKPAYN 296
Query: 165 QVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEE 224
++DW + AW G TGYP +DA MRQL+ EGW+H+ AR VA FLT+ DL + W
Sbjct: 297 RIDWPNDPVLFAAWQQGLTGYPIVDAAMRQLQREGWMHNRARMIVASFLTK-DLLIDWRW 355
Query: 225 GQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
G+ F LL+D D A N G W W + + Q FFR+++PV+ G+K D
Sbjct: 356 GERHFMHLLIDGDPAANNGGWQWAAGTGTDAQPFFRIFNPVSQGQKFD 403
>gi|374292340|ref|YP_005039375.1| deoxyribodipyrimidine photo-lyase [Azospirillum lipoferum 4B]
gi|357424279|emb|CBS87146.1| Deoxyribodipyrimidine photo-lyase [Azospirillum lipoferum 4B]
Length = 494
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 116/236 (49%), Gaps = 15/236 (6%)
Query: 40 LVPTMKE--MGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPST 97
L+PT + GL + +P GET AL L L V + P+ T
Sbjct: 198 LLPTKPDWAAGLRKRWVP------GETAALSHLADFLDGP--VGAYATERDRPD--RDGT 247
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPV-SLLGQIYWREFYYVVGSDTPNFDK 156
+ LSPYL FG + R +H + P P + S L ++ WREF Y + P
Sbjct: 248 SALSPYLAFGEIGPRQVWHAARHAADARPELAPGIDSFLREVGWREFQYHLLHHAPELPD 307
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
+ W + L AW G+TGYP +DA MRQL GW+H+ R VA FL +
Sbjct: 308 RPLDPRFADFPWREDAAGLLAWQRGRTGYPIVDAGMRQLWETGWMHNRVRMIVASFLVK- 366
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSA-SAFFHQFFRVYSPVAFGKKTD 271
DL L W+EG+ F + L+DAD A NAGNW W++ A FFRV++PV G+K D
Sbjct: 367 DLLLPWQEGERWFWDTLVDADLAQNAGNWQWVAGCGADAAPFFRVFNPVLQGEKFD 422
>gi|448308114|ref|ZP_21497995.1| photolyase/cryptochrome [Natronorubrum bangense JCM 10635]
gi|445594526|gb|ELY48680.1| photolyase/cryptochrome [Natronorubrum bangense JCM 10635]
Length = 461
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 113/231 (48%), Gaps = 10/231 (4%)
Query: 50 DESSIPLC----KFP-GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTV--LSP 102
D SIP + P G A RLE A+ + + + A EP+ V LSP
Sbjct: 167 DTESIPTTATDIELPTAGYDAASARLESFCASGIVHYRETRDDLARAVDEPTQAVSRLSP 226
Query: 103 YLKFGCLSVRLFYHELKKILAT--GPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGN 160
YL G + +R + + +L T G + ++ WRE Y + SDTP + +
Sbjct: 227 YLAVGAIGIREVWQRVTDVLETVDGRDRRNVEKYADELTWREHNYHLLSDTPTLETENYD 286
Query: 161 KICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYL 220
++ W + AW G+TGYP +DA MRQL EG+IH+ R VA FLT+ L +
Sbjct: 287 DPPNEIAWRNDADEFAAWKRGETGYPLVDAGMRQLECEGYIHNRPRQVVASFLTKH-LLI 345
Query: 221 SWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
W G + F + LLD D A+NAGNW W++++ R++ PVA K D
Sbjct: 346 DWRRGAAHFRDRLLDHDPAVNAGNWQWIASTGTDSVDVRIFDPVAQLAKYD 396
>gi|55377670|ref|YP_135520.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
43049]
gi|55230395|gb|AAV45814.1| deoxyribodipyrimidine photolyase [Haloarcula marismortui ATCC
43049]
Length = 465
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 122/248 (49%), Gaps = 10/248 (4%)
Query: 27 PRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKP 86
P + D +PT+ ++G +E P P TE + L + E V ++E+
Sbjct: 161 PPSADTLADVDGDALPTLADLGFEE---PEADVPAAGTEEARALLDDFLD-ENVYEYEER 216
Query: 87 NTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKIL-ATGPHAKPPV-SLLGQIYWREFY 144
P + T+ LS +LKFG + +R Y + TG + V Q+ WREFY
Sbjct: 217 RDFP--ADECTSRLSAHLKFGTIGIREVYDRTQAAKEGTGGDRRDSVREFQSQLAWREFY 274
Query: 145 YVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHL 204
V P+ ++W+ +E+ L+AW G TGYP +DA MRQLR E ++H+
Sbjct: 275 TQVLFAHPHVVSSNYKSYENPIEWENDEELLQAWKDGDTGYPIVDAGMRQLRDEAYMHNR 334
Query: 205 ARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSP 263
R VA FLT+ DL + W G F E L+D D A + G W W +++ Q +FR+++P
Sbjct: 335 VRMIVASFLTK-DLLIDWRHGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPYFRIFNP 393
Query: 264 VAFGKKTD 271
+ G+ D
Sbjct: 394 MTQGEDYD 401
>gi|448639842|ref|ZP_21676990.1| deoxyribodipyrimidine photolyase [Haloarcula sinaiiensis ATCC
33800]
gi|445762369|gb|EMA13590.1| deoxyribodipyrimidine photolyase [Haloarcula sinaiiensis ATCC
33800]
Length = 465
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 122/248 (49%), Gaps = 10/248 (4%)
Query: 27 PRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKP 86
P + D +PT+ ++G +E P P TE + L + E V ++E+
Sbjct: 161 PPSADTLADVDGDALPTLADLGFEE---PEADVPAAGTEEARALLDDFLD-ENVYEYEER 216
Query: 87 NTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKIL-ATGPHAKPPV-SLLGQIYWREFY 144
P + T+ LS +LKFG + +R Y + TG + V Q+ WREFY
Sbjct: 217 RDFP--ADECTSRLSAHLKFGTIGIREVYDRTQAAKEGTGGDRRDSVREFQSQLAWREFY 274
Query: 145 YVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHL 204
V P+ ++W+ +E+ L+AW G TGYP +DA MRQLR E ++H+
Sbjct: 275 TQVLFAHPHVVSSNYKSYENPIEWENDEELLQAWKDGDTGYPIVDAGMRQLREEAYMHNR 334
Query: 205 ARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSP 263
R VA FLT+ DL + W G F E L+D D A + G W W +++ Q +FR+++P
Sbjct: 335 VRMIVASFLTK-DLLIDWRHGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPYFRIFNP 393
Query: 264 VAFGKKTD 271
+ G+ D
Sbjct: 394 MTQGEDYD 401
>gi|365160129|ref|ZP_09356302.1| hypothetical protein HMPREF1014_01765 [Bacillus sp. 7_6_55CFAA_CT2]
gi|363624172|gb|EHL75256.1| hypothetical protein HMPREF1014_01765 [Bacillus sp. 7_6_55CFAA_CT2]
Length = 476
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 115/214 (53%), Gaps = 9/214 (4%)
Query: 63 ETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKIL 122
E A K +K ++K + + + PN + + ++L+PYL FG +SV+L YH L
Sbjct: 201 EEGAYKTFKKFFSSK--LASYSEGRDFPN--QNAHSMLAPYLSFGQISVKLMYHYLINKS 256
Query: 123 ATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
+ K +S + Q+ WREF Y + P NK WD E+ L W
Sbjct: 257 TERQCSFFEKQVISFIRQLIWREFSYYLLYHYPFTVYRPLNKSFENFPWDKEEELLRVWQ 316
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
GKTGYPFIDA MR+L G++H+ AR AVA FL + L + W+EG F + LLDAD A
Sbjct: 317 KGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIA 375
Query: 240 MNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
N W W++ S A +FR+++P+ G+K DK
Sbjct: 376 NNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|18857915|dbj|BAB85473.1| CRYPTOCHROME [Sarcophaga crassipalpis]
Length = 216
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 78/119 (65%), Gaps = 3/119 (2%)
Query: 156 KMKGNKICCQVDW-DTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
+M+ N+IC + W TN + L+ W GKTG+P IDA MRQL EGW+HH R+ VA FLT
Sbjct: 1 RMEDNEICLNIPWAQTNHEQLQRWYQGKTGFPLIDAAMRQLLAEGWLHHTLRNTVATFLT 60
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFR--VYSPVAFGKKTD 271
RG L+ +WE G F + LLDADW++ AGNWMW+S+SAF V P+A K+ D
Sbjct: 61 RGGLWQNWEHGLRYFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPIALAKRLD 119
>gi|333983407|ref|YP_004512617.1| deoxyribodipyrimidine photo-lyase [Methylomonas methanica MC09]
gi|333807448|gb|AEG00118.1| Deoxyribodipyrimidine photo-lyase [Methylomonas methanica MC09]
Length = 453
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 129/251 (51%), Gaps = 19/251 (7%)
Query: 23 PTSLPRE-CQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVR 81
P +LP+ G L E + + D S+ PGG AL++L++ A +++ +
Sbjct: 164 PVALPQGLADGQLLDGEQNSDLISRLQQDHSN----ALPGGRQAALQQLDQLTACRDYSQ 219
Query: 82 KFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWR 141
+ + P A +T+ LS YLKFGC SVR Y+ + + L T LL Q+YWR
Sbjct: 220 QRDFPALA------ATSNLSAYLKFGCCSVRETYYAVVESLGT------EHPLLRQLYWR 267
Query: 142 EFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWI 201
+F+ + P ++ ++ W + + +AW+ G+TG P +DA MRQL G +
Sbjct: 268 DFFTQIAFHFPRVFGHAFHERYDKIVWRNDREEFQAWTEGRTGVPIVDAGMRQLNQTGAM 327
Query: 202 HHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRV 260
H+ R VA FL + DL++ W G+ F LLD D +N GNW W +++ Q +FR+
Sbjct: 328 HNRVRMIVASFLVK-DLHIDWRWGERYFARHLLDYDPCVNNGNWQWAASTGCDAQPYFRI 386
Query: 261 YSPVAFGKKTD 271
++P KK D
Sbjct: 387 FNPWLQQKKFD 397
>gi|291616713|ref|YP_003519455.1| PhrB [Pantoea ananatis LMG 20103]
gi|291151743|gb|ADD76327.1| PhrB [Pantoea ananatis LMG 20103]
Length = 475
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 128/268 (47%), Gaps = 29/268 (10%)
Query: 11 ESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRL 70
E +P PK + P P+ +P ++ I FP GE A+KRL
Sbjct: 170 ECVPAPKAREGTPLKEPKSLPPFDYP--------------KADIDTSLFPPGEQAAVKRL 215
Query: 71 EKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVR----LFYHELKKILATGP 126
+ K+ V + K P +L+ ST+ LS YL G LS R HE K L +GP
Sbjct: 216 REFA--KQAVLDYAKQRDLP-ALD-STSRLSVYLSTGVLSPRQCLHRILHEQPKALDSGP 271
Query: 127 HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGY 185
A + ++ WREFY + P K + V W N + +AW GKTGY
Sbjct: 272 AA----VWINELIWREFYRHLIVAHPRLCKHQPFVHWTRNVAWQRNSAHFDAWKAGKTGY 327
Query: 186 PFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNW 245
P +DA MRQ++ GW+H+ R A FL + DL + W EG+ F + L+D D A N G W
Sbjct: 328 PIVDAAMRQMQTIGWMHNRLRMITASFLVK-DLLIDWREGERYFIQQLIDGDLAANNGGW 386
Query: 246 MWLSASAF-FHQFFRVYSPVAFGKKTDK 272
W +++ +FR+++P G++ DK
Sbjct: 387 QWAASTGTDAAPYFRIFNPTTQGERFDK 414
>gi|258541536|ref|YP_003186969.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-01]
gi|384041457|ref|YP_005480201.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-12]
gi|384049972|ref|YP_005477035.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-03]
gi|384053082|ref|YP_005486176.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-07]
gi|384056314|ref|YP_005488981.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-22]
gi|384058955|ref|YP_005498083.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-26]
gi|384062249|ref|YP_005482891.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-32]
gi|384118325|ref|YP_005500949.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256632614|dbj|BAH98589.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-01]
gi|256635671|dbj|BAI01640.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-03]
gi|256638726|dbj|BAI04688.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-07]
gi|256641780|dbj|BAI07735.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-22]
gi|256644835|dbj|BAI10783.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-26]
gi|256647890|dbj|BAI13831.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-32]
gi|256650943|dbj|BAI16877.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256653934|dbj|BAI19861.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus IFO
3283-12]
Length = 309
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 128/260 (49%), Gaps = 19/260 (7%)
Query: 19 ADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRL----EKSL 74
A+ A T+ P C + + L + +G ++P + GE A L E +L
Sbjct: 6 AEFARTAAPTACS--RYTRQKLCARLHRVGTQPPALP-SGWTSGEKAAHANLHRFIENAL 62
Query: 75 ANKEWVR-KFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPH-AKPPV 132
A+ E R + + P+ T++LSPY++ G +SVR +H ++ PH A P
Sbjct: 63 ADYETQRDRADAPH--------GTSLLSPYIRVGQISVRQIWHAIRHAEHQNPHLATPAE 114
Query: 133 SLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIM 192
L ++ WR+F ++ TP+ + W + L AW G+TG+P +DA M
Sbjct: 115 KFLAELGWRDFAWMQMFTTPDLATRNLRAEFDHMPWRADAADLAAWQQGQTGFPLVDAGM 174
Query: 193 RQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASA 252
RQL GW+H+ R VA FLT+ L W EG+ F LLDAD A+NA NW W + +
Sbjct: 175 RQLARTGWMHNRVRMVVASFLTK-HLLTDWREGERWFYAQLLDADAAVNAMNWQWGAGTG 233
Query: 253 F-FHQFFRVYSPVAFGKKTD 271
+FR+++PV +K D
Sbjct: 234 IDAAPWFRIFNPVGQSEKYD 253
>gi|254422518|ref|ZP_05036236.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
gi|196190007|gb|EDX84971.1| deoxyribodipyrimidine photolyase family [Synechococcus sp. PCC
7335]
Length = 480
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 116/234 (49%), Gaps = 8/234 (3%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+PT K +G + + L + GE AL +LEK ++ + ++++ P+ T+ L
Sbjct: 192 LPTAKALGYEWENELLLQ--PGEAAALAQLEKFCDDRRVIAEYDQQRDYPSIA--GTSTL 247
Query: 101 SPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFDKM 157
S LKFG L +R + + + ++ ++ WREFY V PN +
Sbjct: 248 SAALKFGTLGIRTVWEAASDAYSRARSEETHRNIRTWQQELAWREFYQSVMYTFPNLAEG 307
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ WD +E +AW GKTGYP +DA MRQL GW+H+ R VA FLT+ D
Sbjct: 308 PYREPLKDFPWDNDEDLFQAWCEGKTGYPIVDAAMRQLNQTGWMHNRCRMIVASFLTK-D 366
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
L + W G+ F + L D D + N G W W ++S + R+++P + KK D
Sbjct: 367 LIIDWRWGEKYFMQHLFDGDLSANNGGWQWSASSGMDPKPLRIFNPASQAKKYD 420
>gi|392307549|ref|ZP_10270083.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas citrea NCIMB
1889]
Length = 462
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 119/228 (52%), Gaps = 16/228 (7%)
Query: 50 DESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCL 109
D+SS CK+P + E+L R+ E K+ P T+ LSPYL G +
Sbjct: 189 DDSS---CKWPVDD-ESLARIASRFV-IEKCAKYHAERDIPGI--KGTSGLSPYLAIGAI 241
Query: 110 SVRLFYHELK----KILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICC 164
SV+ E++ IL T +K + + ++ WREFY + PN K + N
Sbjct: 242 SVKQLIAEVQCHFPDILQTP--SKDEFTWINELIWREFYRHLIVAYPNLCKYRNFNSKYD 299
Query: 165 QVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEE 224
V W+ NE+ AW G TGYP +DA MRQL GW+H+ R VA FLT+ L + W +
Sbjct: 300 TVVWNDNEELFSAWCRGDTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK-HLLIDWRK 358
Query: 225 GQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
G+ F E L+D D+A N+G W W +++ Q +FR+++PV KK D
Sbjct: 359 GERYFMEKLIDGDFASNSGGWQWAASTGCDAQPYFRIFNPVTQSKKFD 406
>gi|448659248|ref|ZP_21683216.1| deoxyribodipyrimidine photolyase [Haloarcula californiae ATCC
33799]
gi|445760750|gb|EMA12007.1| deoxyribodipyrimidine photolyase [Haloarcula californiae ATCC
33799]
Length = 465
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 118/233 (50%), Gaps = 10/233 (4%)
Query: 42 PTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLS 101
PT+ ++G +E P P TE + L + E V ++E+ P + T+ LS
Sbjct: 176 PTLADLGFEE---PEADVPAAGTEEARALLDDFLD-ENVYEYEERRDFP--ADECTSRLS 229
Query: 102 PYLKFGCLSVRLFYHELKKIL-ATGPHAKPPV-SLLGQIYWREFYYVVGSDTPNFDKMKG 159
+LKFG + +R Y + TG + V Q+ WREFY V P+
Sbjct: 230 AHLKFGTIGIREVYDRTQAAKEGTGGDRRDSVREFQSQLAWREFYTQVLFAHPHVVSSNY 289
Query: 160 NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLY 219
++W+ +E+ L+AW G TGYP +DA MRQLR E ++H+ R VA FLT+ DL
Sbjct: 290 KSYENPIEWENDEELLQAWKDGDTGYPIVDAGMRQLRDEAYMHNRVRMIVASFLTK-DLL 348
Query: 220 LSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+ W G F E L+D D A + G W W +++ Q +FR+++P+ G+ D
Sbjct: 349 IDWRHGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGEDYD 401
>gi|378578915|ref|ZP_09827588.1| FAD-binding deoxyribodipyrimidine photolyase [Pantoea stewartii
subsp. stewartii DC283]
gi|377818428|gb|EHU01511.1| FAD-binding deoxyribodipyrimidine photolyase [Pantoea stewartii
subsp. stewartii DC283]
Length = 475
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 122/264 (46%), Gaps = 21/264 (7%)
Query: 11 ESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRL 70
E +P PK D AP + P E + P D + + FP GE A+KRL
Sbjct: 170 ECVPAPKARDGAPLNTP----------EAISP----FDYDHAEVDDALFPAGEQAAIKRL 215
Query: 71 EKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKP 130
++ A + V + K P ST+ LS YL G LS R H + P
Sbjct: 216 -RAFA-QHAVLDYPKQRDLP--ARDSTSRLSAYLTIGVLSPRQCLHRVLHEHPGALEGSP 271
Query: 131 PVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFID 189
+ ++ WREFY + P K + V W NE + +AW GKTGYP +D
Sbjct: 272 AAVWINELIWREFYRHLIVAFPRLCKHQPFVHWTRHVAWQRNEAHFDAWKAGKTGYPIVD 331
Query: 190 AIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLS 249
A MRQ+ GW+H+ R A FL + DL + W +G+ F + L+D D A N G W W +
Sbjct: 332 AAMRQMLQTGWMHNRLRMITASFLVK-DLLIDWRQGERYFMQQLIDGDLAANNGGWQWAA 390
Query: 250 ASAF-FHQFFRVYSPVAFGKKTDK 272
++ +FR+++P ++ D+
Sbjct: 391 STGTDAAPYFRIFNPTTQSERFDE 414
>gi|139473471|ref|YP_001128187.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes str.
Manfredo]
gi|134271718|emb|CAM29951.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
str. Manfredo]
Length = 469
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 98/176 (55%), Gaps = 6/176 (3%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSP+L+ G + +R YH +++ P++ + L ++ WR+FY +V P+
Sbjct: 228 TSRLSPFLRIGAIGIRTVYHAVRQ----APNSLGQATFLKELAWRDFYNMVYVAYPDQKT 283
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K Q++W N + + W GKTGYP +DA M QL+ GW+H+ R VA FLT+
Sbjct: 284 QPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTK- 342
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL W G+ F++ L+D D A N G W W +++ +FR+++PV K+ D
Sbjct: 343 DLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQSKRFD 398
>gi|116617921|ref|YP_818292.1| deoxyribodipyrimidine photo-lyase type I [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|116096768|gb|ABJ61919.1| deoxyribodipyrimidine photo-lyase type I [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 470
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 131/264 (49%), Gaps = 15/264 (5%)
Query: 15 KPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSL 74
KP P + + + +E L+ T +D+ + K G ET A K L + +
Sbjct: 159 KPAPVSYVIDKRIKSARLLFPENEQLLETF----IDDRFSFIKKDLGSET-AKKVLNRFI 213
Query: 75 ANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSL 134
E + ++++ P ST+ LS YL+ G +S+R + + + P + +
Sbjct: 214 --NESLDQYDEERDFP--ANDSTSHLSRYLRTGEISIRTVWRAIDQ----SPDSDGKSTF 265
Query: 135 LGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQ 194
+ ++ WR+FY ++ PN + NK VDW NE+ EAW G+TG+P +DA MRQ
Sbjct: 266 MKELCWRDFYNMIYVMYPNQNVESVNKDFRHVDWINNEQQFEAWRTGQTGFPIVDAAMRQ 325
Query: 195 LRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFF 254
L GW+H+ R VA FLT+ DL + W G++ F LLD D A N G W W +++
Sbjct: 326 LNATGWMHNRLRMIVASFLTK-DLLIDWRWGEAYFHNKLLDYDAASNIGGWQWAASTGTD 384
Query: 255 HQ-FFRVYSPVAFGKKTDKFELLL 277
+FR+++P KK D L +
Sbjct: 385 SVPYFRIFNPTLQSKKFDSNGLFI 408
>gi|433639824|ref|YP_007285584.1| deoxyribodipyrimidine photolyase [Halovivax ruber XH-70]
gi|433291628|gb|AGB17451.1| deoxyribodipyrimidine photolyase [Halovivax ruber XH-70]
Length = 467
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 117/243 (48%), Gaps = 10/243 (4%)
Query: 32 GILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPN 91
+ P + +P+++++G E + + P G A RLE A +E +
Sbjct: 167 ATVEPADEALPSLRDLGFAEPAAEIP--PAGTGPARDRLETFCAGD----IYEYAEKRDD 220
Query: 92 SLEPSTTVLSPYLKFGCLSVRLFYHELKKIL--ATGPHAKPPVSLLGQIYWREFYYVVGS 149
+ +T +S L FG + +R + ++ L A A + Q+ WREFY V
Sbjct: 221 LADEATARISQDLAFGTIGIREVHERVEATLDGADEGQAASVEAFRRQLAWREFYTQVLW 280
Query: 150 DTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAV 209
P + +DW +E +AW G+TG+P +DA MRQLR E ++H+ AR V
Sbjct: 281 ANPENVTRSHREFPNDIDWRNDEAEFDAWREGRTGFPVVDAGMRQLREEAYVHNRARLIV 340
Query: 210 ACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGK 268
FLT+ DL W G F L+D D A N GNW W++++ Q +FRV++P+ G+
Sbjct: 341 GSFLTK-DLLCDWRRGYEHFRATLVDHDTASNNGNWQWVASTGTDAQPYFRVFNPMKQGR 399
Query: 269 KTD 271
D
Sbjct: 400 DHD 402
>gi|334121002|ref|ZP_08495078.1| Deoxyribodipyrimidine photo-lyase [Microcoleus vaginatus FGP-2]
gi|333455721|gb|EGK84364.1| Deoxyribodipyrimidine photo-lyase [Microcoleus vaginatus FGP-2]
Length = 504
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 128/272 (47%), Gaps = 19/272 (6%)
Query: 12 SLPKPKPADDAPTSLPRECQGILHPDEHL---------VPTMKEMGLDESSIPLCKFPGG 62
S PK +P + P + G+ ++ L VPT +G + PL PG
Sbjct: 158 SKPKAQPVETLPITYLELMTGLTTEEQELANEAGAIETVPTASSLGFIWEN-PLVIEPG- 215
Query: 63 ETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKIL 122
E A ++LE+ + + ++ + A N T+ LS LKFG + +R + + ++
Sbjct: 216 EDAAQQKLEEFCDRAIYQYQGQRNSPAING----TSQLSAALKFGAIGIRTVWQATQIVM 271
Query: 123 ATGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
T + S+ +I WREFY + P WD +EK +AW
Sbjct: 272 DTCHSEEAYTSIRTWQQEIAWREFYQHAMYNFPELADGPYRPAFKDFPWDNDEKLFQAWC 331
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
GKTGYP IDA MRQL GW+H+ R VA FLT+ DL ++W+ G+ F + L+D D
Sbjct: 332 RGKTGYPIIDAAMRQLNQTGWMHNRCRMIVASFLTK-DLIINWQWGEKYFMQKLIDGDLC 390
Query: 240 MNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
N G W W ++S + R+++P +K D
Sbjct: 391 ANNGGWQWSASSGMDPKPLRIFNPATQAQKFD 422
>gi|414085438|ref|YP_006994149.1| FAD binding domain of DNA photolyase family protein [Carnobacterium
maltaromaticum LMA28]
gi|412999025|emb|CCO12834.1| FAD binding domain of DNA photolyase family protein [Carnobacterium
maltaromaticum LMA28]
Length = 362
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 118/212 (55%), Gaps = 9/212 (4%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
G +A KRL + +++ + ++++ P + T+ LS +L+ G LS+R YH +K
Sbjct: 94 GALKARKRLRQFISSG--IEQYDQTRDFP--AQKGTSRLSQFLRTGELSIREVYHRIK-- 147
Query: 122 LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
A P + + L ++ WR+FY ++ + P ++ + + W+++E+ L+AW G
Sbjct: 148 -AEAPDSIGKETYLKELCWRDFYNMIYFENPQQQVLEIKEQYRNLQWNSDEQLLQAWKTG 206
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
+TGYP +DA MRQL GW+H+ R A FL + DL + W G++ F E L+D D A N
Sbjct: 207 QTGYPLVDAAMRQLNQTGWMHNRLRMIAASFLVK-DLLMDWRLGEAYFAEKLIDYDAASN 265
Query: 242 AGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDK 272
G W W +++ +FR+++P ++ D+
Sbjct: 266 IGGWQWAASTGTDAVPYFRIFNPTTQSQRFDE 297
>gi|381336398|ref|YP_005174173.1| deoxyribodipyrimidine photo-lyase type I [Leuconostoc mesenteroides
subsp. mesenteroides J18]
gi|356644364|gb|AET30207.1| deoxyribodipyrimidine photo-lyase type I [Leuconostoc mesenteroides
subsp. mesenteroides J18]
Length = 470
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 131/264 (49%), Gaps = 15/264 (5%)
Query: 15 KPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSL 74
KP P + + + +E L+ T +D+ + K G ET A K L + +
Sbjct: 159 KPAPVSYVIDKRIKSARLLFPENEQLLETF----IDDRFSFIKKDLGSET-AKKVLNRFI 213
Query: 75 ANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSL 134
E + ++++ P ST+ LS YL+ G +S+R + + + P + +
Sbjct: 214 --NESLDQYDEERDFP--ANDSTSHLSRYLRTGEISIRTVWRAIDQ----SPDSDGKSTF 265
Query: 135 LGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQ 194
+ ++ WR+FY ++ PN + NK VDW NE+ EAW G+TG+P +DA MRQ
Sbjct: 266 MKELCWRDFYNMIYVMYPNQNVESINKDFRHVDWINNEQQFEAWRTGQTGFPIVDAAMRQ 325
Query: 195 LRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFF 254
L GW+H+ R VA FLT+ DL + W G++ F LLD D A N G W W +++
Sbjct: 326 LNATGWMHNRLRMIVASFLTK-DLLIDWRWGEAYFHNKLLDYDAASNIGGWQWAASTGTD 384
Query: 255 HQ-FFRVYSPVAFGKKTDKFELLL 277
+FR+++P KK D L +
Sbjct: 385 SVPYFRIFNPTLQSKKFDSNGLFI 408
>gi|160902458|ref|YP_001568039.1| deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95]
gi|160360102|gb|ABX31716.1| Deoxyribodipyrimidine photo-lyase [Petrotoga mobilis SJ95]
Length = 462
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 111/212 (52%), Gaps = 14/212 (6%)
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKK 120
GG E L +E+ + K + P+ TT LSP+LKFG +SVR Y ++ +
Sbjct: 212 GGRKEGLSYIERIVKLKNYSETRNTPSI------DGTTKLSPHLKFGTVSVREVYGKVNE 265
Query: 121 ILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSH 180
++ Q++WR+F+ + P+ + Q+ W+ + +AW
Sbjct: 266 NFGNEH------EIITQLHWRDFFTHILYHFPHVLGNSFKEKYNQIQWENDVDKFKAWCT 319
Query: 181 GKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAM 240
G+TGYP +DA MRQL L GW+H+ R FL + DL++ W G+ F + L+D D A+
Sbjct: 320 GRTGYPIVDAGMRQLNLTGWMHNRVRMITGSFLVK-DLHIDWRWGEKYFAQRLVDYDPAI 378
Query: 241 NAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
N GNW W++++ Q FFR+++P+ +K D
Sbjct: 379 NNGNWQWVASTGCDAQPFFRIFNPILQQQKFD 410
>gi|157369495|ref|YP_001477484.1| deoxyribodipyrimidine photolyase [Serratia proteamaculans 568]
gi|157321259|gb|ABV40356.1| Deoxyribodipyrimidine photo-lyase [Serratia proteamaculans 568]
Length = 476
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 132/275 (48%), Gaps = 29/275 (10%)
Query: 4 QKLV-SVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGG 62
Q+L S ++SLP PKP A +LP V + E + P FP G
Sbjct: 161 QRLTESDIQSLPAPKPR--AGGALP-------------VTAIPEAFDYPPAEPNEDFPAG 205
Query: 63 ETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK--- 119
E AL+RL +E V+ + + P T+ LSPYL G LS R ++ L+
Sbjct: 206 EEAALQRLRSFC--REQVQDYLEQRDLPAI--AGTSSLSPYLAIGVLSPRQCFNRLRAEC 261
Query: 120 -KILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYLEA 177
++L H L ++ WREFY + P K + + +V W N++ L+A
Sbjct: 262 PQLLEN--HDSGAFGWLNELIWREFYRHLMVAYPALCKHRPFIEWTDRVRWQDNQELLQA 319
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W G TGYP +DA MRQL GW+H+ R A FL + DL + W G+S F LLD D
Sbjct: 320 WQQGVTGYPIVDAAMRQLNTTGWMHNRLRMISASFLVK-DLLIDWRAGESYFMSQLLDGD 378
Query: 238 WAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
A N G W W +++ +FR+++P G++ D
Sbjct: 379 LAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFD 413
>gi|417856580|ref|ZP_12501639.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes HKU
QMH11M0907901]
gi|387933535|gb|EIK41648.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes HKU
QMH11M0907901]
Length = 469
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 98/176 (55%), Gaps = 6/176 (3%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSP+L+ G + +R YH +++ P++ + L ++ WR+FY +V P+
Sbjct: 228 TSRLSPFLRIGAIGIRTVYHAVRQ----APNSLGQATFLKELAWRDFYNMVYVAYPDQKT 283
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K Q++W N + + W GKTGYP +DA M QL+ GW+H+ R VA FLT+
Sbjct: 284 QPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTK- 342
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL W G+ F++ L+D D A N G W W +++ +FRV++PV K+ D
Sbjct: 343 DLLCDWRLGEQHFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRVFNPVTQSKRFD 398
>gi|339496340|ref|ZP_08657316.1| deoxyribodipyrimidine photo-lyase type I [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 263
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 100/183 (54%), Gaps = 6/183 (3%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
ST+ LS YL+ G +S+R + + + P + + + ++ WR+FY ++ PN +
Sbjct: 24 STSHLSRYLRTGEISIRTVWRAIDQ----SPDSDGKSTFMKELCWRDFYNMIYVMYPNQN 79
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
NK VDW NE+ EAW G+TG+P +DA MRQL GW+H+ R VA FLT+
Sbjct: 80 VESVNKDFRHVDWINNEQQFEAWRTGQTGFPIVDAAMRQLNATGWMHNRLRMIVASFLTK 139
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDKFE 274
DL + W G++ F LLD D A N G W W +++ +FR+++P KK D
Sbjct: 140 -DLLIDWRWGEAYFHNKLLDYDAASNIGGWQWAASTGTDSVPYFRIFNPTLQSKKFDSNG 198
Query: 275 LLL 277
L +
Sbjct: 199 LFI 201
>gi|420263503|ref|ZP_14766140.1| deoxyribodipyrimidine photolyase [Enterococcus sp. C1]
gi|394769460|gb|EJF49316.1| deoxyribodipyrimidine photolyase [Enterococcus sp. C1]
Length = 473
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 114/212 (53%), Gaps = 10/212 (4%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GE A K+L+ + + + +EK P+ T+ LSP+L FG LS+R + + +
Sbjct: 206 GEDYAHKQLQAFVQKR--LAAYEKDRDLPSI--KGTSRLSPFLSFGQLSIRKVWAACQGM 261
Query: 122 LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
P + + L ++ WR+FY+++ P + + +DW +E+ W G
Sbjct: 262 ----PPSTGKATFLKELAWRDFYHMIYFTHPEQKNYELIEKYRNMDWQKDEEAFNKWQAG 317
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
+TGYP IDA MRQL GW+H+ R VA FLT+ DL + W +G++ F L+D D A N
Sbjct: 318 QTGYPIIDAAMRQLNQTGWMHNRLRMIVASFLTK-DLLIDWRQGEAYFARQLIDYDAASN 376
Query: 242 AGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDK 272
G W W +++ +FR+++P+ GKK DK
Sbjct: 377 IGGWQWAASTGTDAVPYFRIFNPITQGKKFDK 408
>gi|433461813|ref|ZP_20419414.1| DASH family cryptochrome [Halobacillus sp. BAB-2008]
gi|432189636|gb|ELK46722.1| DASH family cryptochrome [Halobacillus sp. BAB-2008]
Length = 481
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 132/265 (49%), Gaps = 13/265 (4%)
Query: 7 VSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEA 66
SV +++ P P D A +P E +PT++ +G D + ++PGG +EA
Sbjct: 164 TSVRKAIAPPAPEDQAELPVP----------EGDIPTLETLGFDPAD-EAPRYPGGSSEA 212
Query: 67 LKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGP 126
KRL + K+ ++ +++ E ++ SPYL GCLS R+ Y +++ T
Sbjct: 213 RKRLIDYIFTKDRLKIYKQTRNGMLK-EDDSSKFSPYLANGCLSPRVVYEQIQAYERTNG 271
Query: 127 HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYP 186
+ L ++ WR+++++V + + + W+ +E+ L+AW GKTGYP
Sbjct: 272 ANESTYMLYFELLWRDYFHLVHRKYGDRIFYRSGLSGKAIPWERDEQLLQAWIDGKTGYP 331
Query: 187 FIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWM 246
+DA MR+L+ G++ + R VA F T+ +L L W G FE L+D D + N GNW+
Sbjct: 332 LVDAGMRELKETGFLSNRGRQNVASFFTK-NLGLDWRIGARWFESQLVDYDVSSNYGNWL 390
Query: 247 WLSASAFFHQFFRVYSPVAFGKKTD 271
+++ FR ++ K D
Sbjct: 391 YIAGVGNDAVPFRAFNVEKQAKDYD 415
>gi|419828231|ref|ZP_14351722.1| DNA photolyase family protein [Vibrio cholerae HC-1A2]
gi|419833153|ref|ZP_14356614.1| DNA photolyase family protein [Vibrio cholerae HC-61A2]
gi|422918665|ref|ZP_16952966.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-02A1]
gi|423779915|ref|ZP_17713999.1| DNA photolyase family protein [Vibrio cholerae HC-55C2]
gi|423839645|ref|ZP_17717748.1| DNA photolyase family protein [Vibrio cholerae HC-59A1]
gi|423867628|ref|ZP_17721422.1| DNA photolyase family protein [Vibrio cholerae HC-60A1]
gi|423999226|ref|ZP_17742419.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-02C1]
gi|424011242|ref|ZP_17754110.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-55B2]
gi|424021069|ref|ZP_17760839.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-59B1]
gi|424626283|ref|ZP_18064733.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-50A1]
gi|424627178|ref|ZP_18065542.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-51A1]
gi|424630973|ref|ZP_18069196.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-52A1]
gi|424637890|ref|ZP_18075887.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-55A1]
gi|424641791|ref|ZP_18079663.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-56A1]
gi|424646307|ref|ZP_18084035.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-57A1]
gi|443525106|ref|ZP_21091302.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-78A1]
gi|341634315|gb|EGS59075.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-02A1]
gi|408010060|gb|EKG47937.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-50A1]
gi|408021264|gb|EKG58528.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-56A1]
gi|408021477|gb|EKG58729.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-55A1]
gi|408029047|gb|EKG65873.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-52A1]
gi|408041001|gb|EKG77142.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-57A1]
gi|408061060|gb|EKG95655.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-51A1]
gi|408623304|gb|EKK96258.1| DNA photolyase family protein [Vibrio cholerae HC-1A2]
gi|408638621|gb|EKL10508.1| DNA photolyase family protein [Vibrio cholerae HC-55C2]
gi|408647223|gb|EKL18751.1| DNA photolyase family protein [Vibrio cholerae HC-60A1]
gi|408648057|gb|EKL19488.1| DNA photolyase family protein [Vibrio cholerae HC-59A1]
gi|408650477|gb|EKL21752.1| DNA photolyase family protein [Vibrio cholerae HC-61A2]
gi|408849615|gb|EKL89628.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-02C1]
gi|408864943|gb|EKM04356.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-59B1]
gi|408870969|gb|EKM10231.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-55B2]
gi|443456469|gb|ELT20140.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-78A1]
Length = 469
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/177 (37%), Positives = 99/177 (55%), Gaps = 3/177 (1%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSPYL G LS R L + G ++ L ++ WREFY + + PN K
Sbjct: 236 TSSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295
Query: 157 MKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
+ K +++W + + + W GKTGYP +DA MRQL GW+H+ R VA FLT+
Sbjct: 296 SRDFVKWGARLEWCNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL++ W G+ F L+D D+A N G W W +++ Q +FR+++PV+ G+K D
Sbjct: 356 -DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411
>gi|119497467|ref|XP_001265492.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Neosartorya
fischeri NRRL 181]
gi|119413654|gb|EAW23595.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Neosartorya
fischeri NRRL 181]
Length = 584
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 122/235 (51%), Gaps = 9/235 (3%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
P K++ +E +P GE EAL+RLE L K VR + + + +T++L
Sbjct: 291 APENKQLSEEEKQHLGQLYPAGEHEALRRLEAFLEEK--VRDYAEARNMVSG--QTTSIL 346
Query: 101 SPYLKFGCLSVRL-FYHELKKILATGPHAKPP-VSLLGQIYWREFYYVVGSDTPNFDKMK 158
SPY G LS R H + + H P V +G++ WREFY V P+ K
Sbjct: 347 SPYFASGLLSARTAIEHARRANKGSLQHGDPGLVHWIGEVAWREFYRHVLVHWPSICMNK 406
Query: 159 GNK-ICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
K ++W+ +E W GKTG+P +DA MRQ++ + W+H+ R VA FL++ D
Sbjct: 407 CFKPEFTNLEWEYDEDRFTTWCEGKTGFPIVDAAMRQVKQDKWMHNRTRMIVASFLSK-D 465
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L + W G+ F E L+D D+A N G W + S++ Q +FR+++P+ ++ D
Sbjct: 466 LLIDWRRGERYFMETLIDGDFASNHGGWGFGSSTGVDPQPYFRIFNPLRQSERFD 520
>gi|94988861|ref|YP_596962.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS9429]
gi|94992751|ref|YP_600850.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS2096]
gi|94542369|gb|ABF32418.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS9429]
gi|94546259|gb|ABF36306.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS2096]
Length = 480
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 98/176 (55%), Gaps = 6/176 (3%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSP+L+ G + +R YH +++ P++ + L ++ WR+FY +V P+
Sbjct: 239 TSRLSPFLRIGAIGIRTVYHAVRQ----APNSLGQATFLKELAWRDFYNMVYVAYPDQKT 294
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K Q++W N + + W GKTGYP +DA M QL+ GW+H+ R VA FLT+
Sbjct: 295 QPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTK- 353
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL W G+ F++ L+D D A N G W W +++ +FRV++PV K+ D
Sbjct: 354 DLLCDWRLGEQHFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRVFNPVTQSKRFD 409
>gi|428776176|ref|YP_007167963.1| deoxyribodipyrimidine photo-lyase type I [Halothece sp. PCC 7418]
gi|428690455|gb|AFZ43749.1| deoxyribodipyrimidine photo-lyase type I [Halothece sp. PCC 7418]
Length = 477
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 124/241 (51%), Gaps = 24/241 (9%)
Query: 41 VPTMKEMGLD-ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTV 99
+PT+ ++GL ++ +PL GET A +RLE+ + +++ P T+V
Sbjct: 190 LPTLNDLGLTWDNDLPLLP---GETAARERLEQFCDRA--ILDYDQNRNYPAI--DGTSV 242
Query: 100 LSPYLKFGCLSVRLFYHELKKIL--ATGPHAKPPVSLLGQ-IYWREFY------YVVGSD 150
LS LKFG +S+R + + A+ ++ Q + WREFY + +D
Sbjct: 243 LSAALKFGAISIREIWQTTVTLWEDTRSDEARDNITAWRQELAWREFYQHALYFFPELAD 302
Query: 151 TPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVA 210
P+ D+ K WD N + +AW GKTGYP +DA MRQL GW+H+ R VA
Sbjct: 303 GPDRDQFK------DFPWDNNPDHFQAWCDGKTGYPIVDAAMRQLNTTGWMHNRCRMIVA 356
Query: 211 CFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKT 270
FLT+ DL ++W+ G+ F + L D D A N G W W ++S + R+++P + +K
Sbjct: 357 SFLTK-DLIINWQWGEKYFMQTLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQAQKF 415
Query: 271 D 271
D
Sbjct: 416 D 416
>gi|424590980|ref|ZP_18030413.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1037(10)]
gi|408033486|gb|EKG70033.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1037(10)]
Length = 469
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 110/201 (54%), Gaps = 13/201 (6%)
Query: 77 KEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG 136
+E V+ + + P + T+ LSPYL G LS R L + G ++ + L
Sbjct: 218 RERVQDYHQARDFP--AQEGTSSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQAWLS 275
Query: 137 QIYWREFYYVVGSDTPNFDKMK-----GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAI 191
++ WREFY + + PN K + G ++ W+ NEK+ + W GKTGYP +DA
Sbjct: 276 ELIWREFYQHLVAIEPNLSKSRDFVEWGARLEW---WNDNEKF-QLWCEGKTGYPIVDAA 331
Query: 192 MRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS 251
MRQL GW+H+ R VA FLT+ DL++ W G+ F L+D D+A N G W W +++
Sbjct: 332 MRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCAST 390
Query: 252 AFFHQ-FFRVYSPVAFGKKTD 271
Q +FR+++PV+ G+K D
Sbjct: 391 GCDGQPYFRIFNPVSQGEKFD 411
>gi|121730224|ref|ZP_01682610.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V52]
gi|147672153|ref|YP_001214921.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae O395]
gi|227119239|ref|YP_002821134.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
gi|262168985|ref|ZP_06036679.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27]
gi|121628028|gb|EAX60578.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V52]
gi|146314536|gb|ABQ19076.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae O395]
gi|227014689|gb|ACP10898.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
gi|262022684|gb|EEY41391.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27]
Length = 469
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 110/201 (54%), Gaps = 13/201 (6%)
Query: 77 KEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG 136
+E V+ + + P + T+ LSPYL G LS R L + G ++ + L
Sbjct: 218 RERVQDYHQARDFP--AQEGTSSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQAWLS 275
Query: 137 QIYWREFYYVVGSDTPNFDKMK-----GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAI 191
++ WREFY + + PN K + G ++ W+ NEK+ + W GKTGYP +DA
Sbjct: 276 ELIWREFYQHLVAIEPNLSKSRDFVEWGARLEW---WNDNEKF-QLWCEGKTGYPIVDAA 331
Query: 192 MRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS 251
MRQL GW+H+ R VA FLT+ DL++ W G+ F L+D D+A N G W W +++
Sbjct: 332 MRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCAST 390
Query: 252 AFFHQ-FFRVYSPVAFGKKTD 271
Q +FR+++PV+ G+K D
Sbjct: 391 GCDGQPYFRIFNPVSQGEKFD 411
>gi|392531474|ref|ZP_10278611.1| deoxyribodipyrimidine photo-lyase [Carnobacterium maltaromaticum
ATCC 35586]
Length = 475
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 117/212 (55%), Gaps = 9/212 (4%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
G +A KRL + +++ + ++++ P + T+ LS +L+ G LS+R YH +K
Sbjct: 207 GALKARKRLRQFISSG--IEQYDQTRDFP--AQKGTSRLSQFLRTGELSIREVYHRIK-- 260
Query: 122 LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
A P + + L ++ WR+FY ++ + P ++ + + W+ +E+ L+AW G
Sbjct: 261 -AEAPDSIGKETYLKELCWRDFYNMIYFENPQQQVLEIKEQYRNLQWNNDEQLLQAWKTG 319
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
+TGYP +DA MRQL GW+H+ R A FL + DL + W G++ F E L+D D A N
Sbjct: 320 QTGYPLVDAAMRQLNQTGWMHNRLRMIAASFLVK-DLLMDWRLGEAYFAEKLIDYDAASN 378
Query: 242 AGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDK 272
G W W +++ +FR+++P ++ D+
Sbjct: 379 IGGWQWAASTGTDAVPYFRIFNPTTQSQRFDE 410
>gi|262403201|ref|ZP_06079761.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586]
gi|262350700|gb|EEY99833.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586]
Length = 469
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 99/177 (55%), Gaps = 3/177 (1%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSPYL G LS R L + A G + L ++ WREFY + + PN K
Sbjct: 236 TSSLSPYLAIGALSARQCVARLYRESAMGVLGEGAQVWLSELIWREFYQHLVAREPNLSK 295
Query: 157 MKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
+ ++ ++W + + + W G+TGYP +DA MRQL GW+H+ R VA FLT+
Sbjct: 296 SRDFHEWGSHLEWWNDHEKFQRWCEGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL++ W G+ F L+D D+A N G W W +++ Q +FR+++PV+ G+K D
Sbjct: 356 -DLHIDWRWGERYFMSQLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411
>gi|365838261|ref|ZP_09379611.1| deoxyribodipyrimidine photo-lyase [Hafnia alvei ATCC 51873]
gi|364560222|gb|EHM38167.1| deoxyribodipyrimidine photo-lyase [Hafnia alvei ATCC 51873]
Length = 476
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 130/277 (46%), Gaps = 32/277 (11%)
Query: 4 QKLV-SVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGG 62
Q+L S + SLP PK D A C+ + +K + + FP G
Sbjct: 162 QRLTHSDVRSLPAPKTRDQA-------CE---------MSEIKPFDYPQQGLDSVLFPTG 205
Query: 63 ETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKIL 122
E AL+RL + +E V+ + + P T+VLSPYL G LS R L ++L
Sbjct: 206 EEAALQRLR--VFCREHVQDYAQQRDIPAV--DGTSVLSPYLAVGVLSPR---QCLNRLL 258
Query: 123 ATGPHA-----KPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKI-CCQVDWDTNEKYLE 176
A P L ++ WREFY + P + K V W + ++L
Sbjct: 259 AECPDTLEDRESGAFVWLNELVWREFYRHLLVAYPKLCRHKPFIAWTDHVRWSGDIEHLT 318
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
AW GKTGYP +DA MRQL GW+H+ R VA FL + DL ++W G+ F L+D
Sbjct: 319 AWQQGKTGYPIVDAAMRQLNHTGWMHNRLRMIVASFLVK-DLLINWRAGECYFMSQLIDG 377
Query: 237 DWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
D A N G W W ++S +FR+++P G++ DK
Sbjct: 378 DLAANNGGWQWAASSGTDAAPYFRIFNPTTQGERFDK 414
>gi|423581405|ref|ZP_17557516.1| hypothetical protein IIA_02920 [Bacillus cereus VD014]
gi|401216170|gb|EJR22885.1| hypothetical protein IIA_02920 [Bacillus cereus VD014]
Length = 476
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 100/179 (55%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L YH L K +S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVISFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L +SW+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLISWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|448633777|ref|ZP_21674276.1| deoxyribodipyrimidine photolyase [Haloarcula vallismortis ATCC
29715]
gi|445750468|gb|EMA01906.1| deoxyribodipyrimidine photolyase [Haloarcula vallismortis ATCC
29715]
Length = 465
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 119/233 (51%), Gaps = 10/233 (4%)
Query: 42 PTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLS 101
PT+ ++G +E P P T+ + L + E V ++E+ P + T+ LS
Sbjct: 176 PTLADLGFEE---PEADVPTAGTDEARALLDDFLD-ENVYEYEERRDFP--ADECTSRLS 229
Query: 102 PYLKFGCLSVRLFYHELKKIL-ATGPHAKPPV-SLLGQIYWREFYYVVGSDTPNFDKMKG 159
+LKFG + +R Y + TG + V Q+ WREFY V P+
Sbjct: 230 AHLKFGTIGIREVYERTQDAKEGTGGDRRESVREFQSQLAWREFYTQVLFAHPHVVSSNY 289
Query: 160 NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLY 219
++W+ +E+ L+AW G+TGYP +DA MRQLR E ++H+ R VA FLT+ DL
Sbjct: 290 KSYENPIEWENDEELLQAWKDGETGYPIVDAGMRQLREEAYMHNRVRMIVASFLTK-DLL 348
Query: 220 LSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+ W G F E L+D D A + G W W +++ Q +FR+++P+ G+ D
Sbjct: 349 IDWRHGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGEDYD 401
>gi|322510730|gb|ADX06044.1| putative deoxyribodipyrimidine photo-lyase [Organic Lake
phycodnavirus 1]
Length = 443
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 109/215 (50%), Gaps = 27/215 (12%)
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKK 120
GG LK+L+KS A E N L TT LS Y+K+GCLS+R YH K
Sbjct: 197 GGRKHGLKQLKKSHATYE-----------RNKLNTETTHLSSYIKYGCLSIREVYHSFK- 244
Query: 121 ILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF-DKMKGNKICCQ-VDWDTNEKYLEAW 178
L Q+ WREF+Y + P DK K + + W N+K+L+AW
Sbjct: 245 ----------DDDLKSQLVWREFFYYINYYFPELIDKSKSYQSKYDAIKWVQNKKHLDAW 294
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
HG+TG+P +DA MRQL G++H+ R A FL R L ++W G+ F + L+D D
Sbjct: 295 KHGQTGFPVVDACMRQLNHSGYMHNRGRLISANFLNRI-LGINWRSGELYFAQTLIDYDP 353
Query: 239 AMNAGNWMWLSASAFFHQFF--RVYSPVAFGKKTD 271
+N NW W+S+ + + RV++P K+ D
Sbjct: 354 CVNNANWQWVSSVGIDTKPYSQRVFNPWLQSKRFD 388
>gi|237807886|ref|YP_002892326.1| deoxyribodipyrimidine photo-lyase [Tolumonas auensis DSM 9187]
gi|237500147|gb|ACQ92740.1| Deoxyribodipyrimidine photo-lyase [Tolumonas auensis DSM 9187]
Length = 465
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 9/230 (3%)
Query: 47 MGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKF 106
+ +D + +P GE L++L+ A K +R++++ P P T+ +SPYL
Sbjct: 185 VSIDYPRVDSSDWPVGEAAVLQQLQDFCAEK--LRQYDEQRDFPAC--PGTSRISPYLTL 240
Query: 107 GCLSVRLFYHELKKILATGPHAK--PPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKI-C 163
G +SVR ++ L P + P L ++ WREFY + P+ K K K
Sbjct: 241 GIISVRQCLAAIEAALGQLPFERGAPGFVWLNELIWREFYQHLLVAFPHVSKHKAFKPET 300
Query: 164 CQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWE 223
+ W ++ AW GKTGYP +DA MR L GW+H+ R VA FLT+ DL++ W
Sbjct: 301 DHIRWLWDDARFTAWCEGKTGYPIVDAAMRCLNQTGWMHNRLRMIVASFLTK-DLHIDWR 359
Query: 224 EGQSVFEELLLDADWAMNAGNWMW-LSASAFFHQFFRVYSPVAFGKKTDK 272
G+ F + L+D + A N G W W S A +FR+++P G++ D+
Sbjct: 360 LGERYFMQHLIDGELAANNGGWQWAASTGADAAPYFRIFNPTTQGQRFDE 409
>gi|302541523|ref|ZP_07293865.1| deoxyribodipyrimidine photolyase [Streptomyces hygroscopicus ATCC
53653]
gi|302459141|gb|EFL22234.1| deoxyribodipyrimidine photolyase [Streptomyces himastatinicus ATCC
53653]
Length = 445
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 21/233 (9%)
Query: 44 MKEMGLDESSIPLCKFP-GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSP 102
+ + L S P P GGE +RL+ L + + + A ++ T+ LSP
Sbjct: 185 LSALSLLGSGSPSPGLPEGGERAGRRRLDAWLRSGLGAYADRQDDLAGDA----TSRLSP 240
Query: 103 YLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD----KMK 158
YL FGCLS H +K + GP A + + Q+ WR+F++ V + P+ + +
Sbjct: 241 YLHFGCLSPVELVHRARK--SGGPGAD---AFVRQLAWRDFHHQVLAARPDASHTDYRPR 295
Query: 159 GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
G++ W +++ + AW G+TGYP +DA MRQL EGW+H+ AR VA FLT+ L
Sbjct: 296 GDR------WRSDDAAVAAWKAGRTGYPIVDAGMRQLAAEGWMHNRARLLVASFLTK-TL 348
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
Y+ W G F +LL+D D A N NW W++ + + RV +P+A ++ D
Sbjct: 349 YVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRPNRVLNPLAQARRFD 401
>gi|433459950|ref|ZP_20417586.1| deoxyribodipyrimidine photo-lyase [Halobacillus sp. BAB-2008]
gi|432192066|gb|ELK48979.1| deoxyribodipyrimidine photo-lyase [Halobacillus sp. BAB-2008]
Length = 474
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 114/211 (54%), Gaps = 6/211 (2%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GE +A RLE+ L + +++ P T+++S YL+ G +SVR YH++
Sbjct: 204 GEADAWARLEQFLDAD--IYDYDERRDFPAV--DGTSLMSRYLRTGAISVRSVYHQIHDQ 259
Query: 122 LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
+ + + + ++ WR+FY ++ PN + + + W+ +E LE W G
Sbjct: 260 VDFRKKTEGVETYISELAWRDFYNMIYHFYPNAHDEEVVEKYQGIPWNNDEDVLERWKEG 319
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
+TG+P IDA MRQL GW+H+ R AVA FLT+ DL + W +G+ F+E L+D D A N
Sbjct: 320 RTGFPIIDAAMRQLNESGWMHNRLRMAVASFLTK-DLLMDWRKGERYFQEKLVDYDPASN 378
Query: 242 AGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
G W W +++ +FRV++P ++ D
Sbjct: 379 IGGWQWAASTGTDPVPYFRVFNPTRQSERFD 409
>gi|398800371|ref|ZP_10559643.1| deoxyribodipyrimidine photolyase [Pantoea sp. GM01]
gi|398095538|gb|EJL85874.1| deoxyribodipyrimidine photolyase [Pantoea sp. GM01]
Length = 475
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 107/216 (49%), Gaps = 7/216 (3%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FP GE ALK+L K+ V+ + P T+ LS YL G LS R H +
Sbjct: 204 FPAGEEAALKQLRHFA--KQAVQYYPDQRDLPAI--DGTSRLSAYLAIGVLSPRQCLHRV 259
Query: 119 KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYLEA 177
K + + L ++ WREFY + P K + VDW N+ +L A
Sbjct: 260 LKEHPDALNEGKAFTWLNELIWREFYRHLMVAFPALCKHQPFVDWTRNVDWQKNDHHLAA 319
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W GKTGYP +DA MRQL GW+H+ R A FL + DL + W EG+ F + L+D D
Sbjct: 320 WQQGKTGYPIVDAAMRQLNTLGWMHNRLRMITASFLVK-DLLIDWREGERYFMQQLIDGD 378
Query: 238 WAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
A N G W W +++ +FR+++P G++ DK
Sbjct: 379 LAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDK 414
>gi|448677847|ref|ZP_21689037.1| deoxyribodipyrimidine photolyase [Haloarcula argentinensis DSM
12282]
gi|445773522|gb|EMA24555.1| deoxyribodipyrimidine photolyase [Haloarcula argentinensis DSM
12282]
Length = 465
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 119/234 (50%), Gaps = 10/234 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+PT+ ++G +E P P T+ + L + E V ++E+ P + T+ L
Sbjct: 175 IPTLADLGFEE---PEATVPAAGTDDARALLDDFLD-ENVYEYEERRDFP--ADECTSRL 228
Query: 101 SPYLKFGCLSVRLFYHELKKIL-ATGPHAKPPV-SLLGQIYWREFYYVVGSDTPNFDKMK 158
S +LKFG + +R Y + TG + V Q+ WREFY V P+
Sbjct: 229 SAHLKFGTIGIREVYDRTQDAKEGTGGDRRESVREFQSQLAWREFYTQVLFAHPHVVTSN 288
Query: 159 GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
++W+ +E+ L+ W G+TGYP +DA MRQLR E ++H+ R VA FLT+ DL
Sbjct: 289 YKSYENPIEWENDEELLQTWKDGETGYPIVDAGMRQLREEAYMHNRVRMIVASFLTK-DL 347
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+ W G F E L+D D A + G W W +++ Q +FR+++P+ G+ D
Sbjct: 348 LIDWRHGYEWFREKLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGEDYD 401
>gi|325568101|ref|ZP_08144542.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC
12755]
gi|325158302|gb|EGC70453.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC
12755]
Length = 473
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 114/212 (53%), Gaps = 10/212 (4%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GE A K+L+ + + + +EK P+ T+ LSP+L FG +S+R + + +
Sbjct: 206 GEDYAHKQLQAFVQKR--LAAYEKDRDLPSI--KGTSRLSPFLSFGQISIRKVWAACQGM 261
Query: 122 LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
P + + L ++ WR+FY+++ P + + +DW +E+ W G
Sbjct: 262 ----PPSTGKATFLKELAWRDFYHMIYFTHPEQKNYELIEKYRNMDWQKDEEAFNKWQAG 317
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
+TGYP IDA MRQL GW+H+ R VA FLT+ DL + W +G++ F L+D D A N
Sbjct: 318 QTGYPIIDAAMRQLNQTGWMHNRLRMIVASFLTK-DLLIDWRQGEAYFARQLIDYDAASN 376
Query: 242 AGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDK 272
G W W +++ +FR+++P+ GKK DK
Sbjct: 377 IGGWQWAASTGTDAVPYFRIFNPITQGKKFDK 408
>gi|417822869|ref|ZP_12469467.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE48]
gi|419836871|ref|ZP_14360311.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46B1]
gi|421343000|ref|ZP_15793404.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43B1]
gi|421355393|ref|ZP_15805724.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-45]
gi|423734313|ref|ZP_17707526.1| DNA photolyase family protein [Vibrio cholerae HC-41B1]
gi|424008597|ref|ZP_17751545.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-44C1]
gi|340048999|gb|EGR09915.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE48]
gi|395941567|gb|EJH52244.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43B1]
gi|395950063|gb|EJH60682.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-45]
gi|408631158|gb|EKL03717.1| DNA photolyase family protein [Vibrio cholerae HC-41B1]
gi|408857421|gb|EKL97109.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46B1]
gi|408865383|gb|EKM04786.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-44C1]
Length = 469
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 109/201 (54%), Gaps = 13/201 (6%)
Query: 77 KEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG 136
+E V+ + + P + T+ LSPYL G LS R L + G ++ L
Sbjct: 218 RERVQDYHQARDFP--VREGTSSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLS 275
Query: 137 QIYWREFYYVVGSDTPNFDKMK-----GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAI 191
++ WREFY + + PN K + G ++ W+ NEK+ + W GKTGYP +DA
Sbjct: 276 ELIWREFYQHLVAIEPNLSKSRDFVEWGARLEW---WNDNEKF-QLWCEGKTGYPIVDAA 331
Query: 192 MRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS 251
MRQL GW+H+ R VA FLT+ DL++ W G+ F L+D D+A N G W W +++
Sbjct: 332 MRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCAST 390
Query: 252 AFFHQ-FFRVYSPVAFGKKTD 271
Q +FR+++PV+ G+K D
Sbjct: 391 GCDGQPYFRIFNPVSQGEKFD 411
>gi|56751401|ref|YP_172102.1| DNA photolyase [Synechococcus elongatus PCC 6301]
gi|118595452|sp|P05327.4|PHR_SYNP6 RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|56686360|dbj|BAD79582.1| DNA photolyase [Synechococcus elongatus PCC 6301]
Length = 484
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 129/273 (47%), Gaps = 25/273 (9%)
Query: 11 ESLPKPKPADDAPTSL----PRECQGILHPDEHLVPTMKEMGLD-ESSIPLCKFPGGETE 65
++ PKP P PT L P + I +PT+K++G D + P+ GET
Sbjct: 157 QAQPKPTPVA-TPTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEP---GETA 212
Query: 66 ALKRLE----KSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVR--LFYHELK 119
A+ RL+ +++A+ + R F E T+ LSP LKFG + +R
Sbjct: 213 AIARLQEFCDRAIADYDPQRNFPA--------EAGTSGLSPALKFGAIGIRQAWRAASAA 264
Query: 120 KILATGPHAKPPVSLLGQ-IYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
L+ A+ + + Q + WREFY P+ + Q W+ E AW
Sbjct: 265 HALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAW 324
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ +TGYP +DA MRQL GW+H+ VA FLT+ DL + W G+ F + L+D D
Sbjct: 325 TQAQTGYPIVDAAMRQLTETGWMHNRCWMIVASFLTK-DLIIDWRRGEQFFMQHLVDGDL 383
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
A N G W W ++S + R+++P + KK D
Sbjct: 384 AANNGGWQWSASSGMDPKPLRIFNPASQAKKFD 416
>gi|452959038|gb|EME64379.1| deoxyribodipyrimidine photo-lyase [Rhodococcus ruber BKS 20-38]
Length = 454
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 116/230 (50%), Gaps = 24/230 (10%)
Query: 49 LDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPS---TTVLSPYLK 105
LD +++P P GE AL R + R + P+ + P T+ LSPYLK
Sbjct: 185 LDGTTLP----PAGEAAALHRWHE-------FRDDDLPHYDTDRDRPDLDRTSRLSPYLK 233
Query: 106 FGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQ 165
FGC+ R H+++ + G + L ++ WR+FY V P+ + N+
Sbjct: 234 FGCIHPRTLLHDVRSDRSAGAN-----RLRSELAWRDFYADVLHHRPDTARRNYNRRFDD 288
Query: 166 VDWDTN---EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSW 222
+ +D+ E+ AW G+TG+P +DA MRQL EGW+H+ R VA FL + DL+L W
Sbjct: 289 IAYDSGPDAERNFAAWQQGRTGFPIVDAGMRQLLAEGWMHNRLRMIVASFLAK-DLHLPW 347
Query: 223 EEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
G F + L+D D A N W W + S +FRV++P+ G+K D
Sbjct: 348 WWGARHFMDRLVDGDLASNQHGWQWTAGSGTDAAPYFRVFNPITQGEKFD 397
>gi|171913802|ref|ZP_02929272.1| Deoxyribodipyrimidine photo-lyase [Verrucomicrobium spinosum DSM
4136]
Length = 475
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 135/275 (49%), Gaps = 34/275 (12%)
Query: 12 SLPKPKPAD------DAPT----SLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPG 61
SLPK +P DAP+ SLP +PT+ L E P P
Sbjct: 161 SLPKAQPLSKVRTLGDAPSPKIKSLP-------------LPTVVHWHLPE---PTATLPT 204
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
+A + K+ + + ++E+ P+ P T+ LSP L++G +S+R YH ++
Sbjct: 205 PGEKAARDRMKTFVDSVRLPRYEETRNFPSV--PGTSQLSPDLRYGLISIRELYHRCQQA 262
Query: 122 LATG---PHAKPPV-SLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEA 177
LA P A+ + + + ++ WREFY V P + N V W + L A
Sbjct: 263 LAQAGGQPAAQSGINTYIKELAWREFYMAVLHFYPEVLETDFNPDLRGVSWHQDPAGLAA 322
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W G+TG+P +DA MRQL GW+H+ R V+ FLT+ DL++ W EG+S F +LL+D +
Sbjct: 323 WKEGRTGFPLVDAGMRQLLATGWMHNRVRMIVSMFLTK-DLHVHWMEGESHFMQLLVDGE 381
Query: 238 WAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
A N G W W + + A +FR+ +P K+ D
Sbjct: 382 IASNNGGWQWSAGTGADAAPWFRIQNPWTQTKRYD 416
>gi|206974530|ref|ZP_03235446.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
H3081.97]
gi|206747173|gb|EDZ58564.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
H3081.97]
Length = 476
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L YH L K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLMYHYLINKSNEKQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK WD E+ L W GKTGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|376316713|emb|CCG00097.1| deoxyribodipyrimidine photo-lyase type I [uncultured Flavobacteriia
bacterium]
Length = 433
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 121/244 (49%), Gaps = 25/244 (10%)
Query: 30 CQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTA 89
+ I ++ T+KEMG D+ L FP + K+W+ K+ +
Sbjct: 173 SKKIAKSTREILITLKEMGFDDKE--LVPFPSDDYP-----------KKWMAKYGENRNY 219
Query: 90 PNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGS 149
P ++E T+ L +L+FG +S+R +K T P + L ++ WR+FY +
Sbjct: 220 P-AIEGGTSHLGVHLRFGTISIRQL---ARKAEQTDP------TFLNELIWRDFYQAIIY 269
Query: 150 DTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAV 209
P+ K K ++W+ NE ++W GKTGYP +DA MR+L G++H+ R V
Sbjct: 270 HFPHSVKGSFKKQYDAIEWENNEVEFQSWREGKTGYPLVDAGMRELNETGYMHNRVRMVV 329
Query: 210 ACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGK 268
A FL + L + W G++ F E LLD D A N G W W + S +FRV++P A +
Sbjct: 330 ASFLVK-HLLIDWRWGETYFAEKLLDFDLASNVGGWQWAAGSGCDAAPYFRVFNPTAQLE 388
Query: 269 KTDK 272
K DK
Sbjct: 389 KFDK 392
>gi|153827504|ref|ZP_01980171.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-2]
gi|149738567|gb|EDM52922.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-2]
Length = 469
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 109/201 (54%), Gaps = 13/201 (6%)
Query: 77 KEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG 136
+E V+ + + P + T+ LSPYL G LS R L + G ++ L
Sbjct: 218 RERVQDYHQARDFP--AQEGTSSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLS 275
Query: 137 QIYWREFYYVVGSDTPNFDKMK-----GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAI 191
++ WREFY + + PN K + G ++ W+ NEK+ + W GKTGYP +DA
Sbjct: 276 ELIWREFYQHLVAIEPNLSKSRDFVEWGARLEW---WNDNEKF-QLWCEGKTGYPIVDAA 331
Query: 192 MRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS 251
MRQL GW+H+ R VA FLT+ DL++ W G+ F L+D D+A N G W W +++
Sbjct: 332 MRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCAST 390
Query: 252 AFFHQ-FFRVYSPVAFGKKTD 271
Q +FR+++PV+ G+K D
Sbjct: 391 GCDGQPYFRIFNPVSQGEKFD 411
>gi|254224596|ref|ZP_04918212.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V51]
gi|125622659|gb|EAZ50977.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V51]
Length = 469
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 109/201 (54%), Gaps = 13/201 (6%)
Query: 77 KEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG 136
+E V+ + + P + T+ LSPYL G LS R L + G ++ L
Sbjct: 218 RERVQDYHQARDFP--AQEGTSSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLS 275
Query: 137 QIYWREFYYVVGSDTPNFDKMK-----GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAI 191
++ WREFY + + PN K + G ++ W+ NEK+ + W GKTGYP +DA
Sbjct: 276 ELIWREFYQHLVAIEPNLSKSRDFVEWGARLEW---WNDNEKF-QLWCEGKTGYPIVDAA 331
Query: 192 MRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS 251
MRQL GW+H+ R VA FLT+ DL++ W G+ F L+D D+A N G W W +++
Sbjct: 332 MRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCAST 390
Query: 252 AFFHQ-FFRVYSPVAFGKKTD 271
Q +FR+++PV+ G+K D
Sbjct: 391 GCDGQPYFRIFNPVSQGEKFD 411
>gi|449145685|ref|ZP_21776486.1| deoxyribodipyrimidine photolyase [Vibrio mimicus CAIM 602]
gi|449078633|gb|EMB49566.1| deoxyribodipyrimidine photolyase [Vibrio mimicus CAIM 602]
Length = 469
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 100/177 (56%), Gaps = 3/177 (1%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+VLSPYL G LS R L + A ++ L ++ WREFY + + PN K
Sbjct: 236 TSVLSPYLAIGALSARQCVARLYRESAMSALSEGAQVWLSELIWREFYQHLVAIEPNISK 295
Query: 157 MKGN-KICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
+ + +++W + + + W G+TGYP +DA MRQL GW+H+ R VA FLT+
Sbjct: 296 SRDFLEWGARLEWWNDSEKFQRWCEGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL++ W G+ F L+D D+A N G W W +++ Q +FR+++PV+ G+K D
Sbjct: 356 -DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411
>gi|428220832|ref|YP_007105002.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 7502]
gi|427994172|gb|AFY72867.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 7502]
Length = 481
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 127/272 (46%), Gaps = 24/272 (8%)
Query: 14 PKPKPADDAPTSLP-RECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEK 72
PKP P L + C G+ D +P++ E+G + P E ++L
Sbjct: 162 PKPSPLPKPQKLLGLKNCDGL---DAIPLPSLAELGFSHNQT----IPASGEEIAQKLLT 214
Query: 73 SLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKIL-------ATG 125
+ + + ++K P T+ LSP+L+FG + +R + ++ +
Sbjct: 215 EFCDSQKLYNYKKDRDFPAI--DGTSNLSPHLRFGTIGIRDCWAATVAVMIDAEADITSE 272
Query: 126 PHAKPPVSLLG------QIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
+ L G ++ WREFY V P + + WD N +Y +AWS
Sbjct: 273 QDQRNAQKLEGIQTWRQELAWREFYQHVLFHFPQLSQSAYRPQMQRFAWDQNHEYFQAWS 332
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
+G+TGYP +DA MRQL GW+H+ R VA FLT+ DL L+W+ G+ F + L+D D A
Sbjct: 333 NGRTGYPIVDAAMRQLNQTGWMHNRCRMIVASFLTK-DLILNWQWGELYFMQKLIDGDLA 391
Query: 240 MNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
N G W W ++S Q R+++P + K D
Sbjct: 392 ANNGGWQWSASSGMDTQPLRIFNPSSQALKFD 423
>gi|254284783|ref|ZP_04959750.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae AM-19226]
gi|417818812|ref|ZP_12465432.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE39]
gi|421349744|ref|ZP_15800113.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-25]
gi|423938868|ref|ZP_17732353.1| DNA photolyase family protein [Vibrio cholerae HE-40]
gi|423968686|ref|ZP_17735903.1| DNA photolyase family protein [Vibrio cholerae HE-46]
gi|150425568|gb|EDN17344.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae AM-19226]
gi|340043526|gb|EGR04484.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE39]
gi|395956361|gb|EJH66955.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-25]
gi|408664649|gb|EKL35479.1| DNA photolyase family protein [Vibrio cholerae HE-40]
gi|408667250|gb|EKL38000.1| DNA photolyase family protein [Vibrio cholerae HE-46]
Length = 469
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 109/201 (54%), Gaps = 13/201 (6%)
Query: 77 KEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG 136
+E V+ + + P + T+ LSPYL G LS R L + G ++ L
Sbjct: 218 RERVQDYHQARDFP--AQEGTSSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLS 275
Query: 137 QIYWREFYYVVGSDTPNFDKMK-----GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAI 191
++ WREFY + + PN K + G ++ W+ NEK+ + W GKTGYP +DA
Sbjct: 276 ELIWREFYQHLVAIEPNLSKSRDFVEWGARLEW---WNDNEKF-QLWCEGKTGYPIVDAA 331
Query: 192 MRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS 251
MRQL GW+H+ R VA FLT+ DL++ W G+ F L+D D+A N G W W +++
Sbjct: 332 MRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCAST 390
Query: 252 AFFHQ-FFRVYSPVAFGKKTD 271
Q +FR+++PV+ G+K D
Sbjct: 391 GCDGQPYFRIFNPVSQGEKFD 411
>gi|392382530|ref|YP_005031727.1| deoxyribodipyrimidine photo-lyase [Azospirillum brasilense Sp245]
gi|356877495|emb|CCC98335.1| deoxyribodipyrimidine photo-lyase [Azospirillum brasilense Sp245]
Length = 485
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 99/183 (54%), Gaps = 13/183 (7%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKI------LATGPHAKPPVSLLGQIYWREFYYVVGS 149
T+ +SP+L FG + R +H + LA G A L ++ WREF + +
Sbjct: 240 GTSAMSPHLAFGEIGPRQIWHAARHAADQRHELAAGAEA-----FLRELGWREFNHHLLR 294
Query: 150 DTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAV 209
+ P + + W T++ L AW G+TGYP +DA MRQL GW+H+ R V
Sbjct: 295 EEPGIPDTPLDTRFARFPWRTDKAGLRAWQSGRTGYPIVDAGMRQLWQTGWMHNRVRMIV 354
Query: 210 ACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSA-SAFFHQFFRVYSPVAFGK 268
FL + DL + W+EG+S F + L+DAD A NAGNW W++ A FFRV++P+ G+
Sbjct: 355 GSFLIK-DLLIPWQEGESWFWDTLVDADIANNAGNWQWVAGCGADAAPFFRVFNPILQGE 413
Query: 269 KTD 271
K D
Sbjct: 414 KFD 416
>gi|421851103|ref|ZP_16284024.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus NBRC
101655]
gi|371458034|dbj|GAB29227.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus NBRC
101655]
Length = 473
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 108/205 (52%), Gaps = 12/205 (5%)
Query: 70 LEKSLANKEWVR-KFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPH- 127
+E +LA+ E R + + P+ T++LSPY++ G +SVR +H ++ PH
Sbjct: 222 IENALADYETQRDRADAPH--------GTSLLSPYIRVGQISVRQIWHAIRHAEHQNPHL 273
Query: 128 AKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPF 187
A P L ++ WR+F ++ TP+ + W + L AW G+TG+P
Sbjct: 274 ATPAEKFLAELGWRDFAWMQMFTTPDLATRNLRAEFDHMPWRADAADLAAWQQGQTGFPL 333
Query: 188 IDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMW 247
+DA MRQL GW+H+ R VA FLT+ L W EG+ F LLDAD A+NA NW W
Sbjct: 334 VDAGMRQLARTGWMHNRVRMVVASFLTK-HLLTDWREGERWFYAQLLDADAAVNAMNWQW 392
Query: 248 LSASAF-FHQFFRVYSPVAFGKKTD 271
+ + +FR+++PV +K D
Sbjct: 393 GAGTGIDAAPWFRIFNPVGQSEKYD 417
>gi|343497166|ref|ZP_08735244.1| deoxyribodipyrimidine photolyase [Vibrio nigripulchritudo ATCC
27043]
gi|342819829|gb|EGU54664.1| deoxyribodipyrimidine photolyase [Vibrio nigripulchritudo ATCC
27043]
Length = 479
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 100/182 (54%), Gaps = 8/182 (4%)
Query: 97 TTVLSPYLKFGCLS-----VRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDT 151
T+ LSPYL GCLS RL Y E ++ + + L ++ WREFY +
Sbjct: 241 TSRLSPYLALGCLSPRQCIARLTYQENDRLKNFDELNEGEQTWLSELIWREFYQHLLEFE 300
Query: 152 PNFDK-MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVA 210
P K + ++W +E +L W +G+TGYP +DA MRQL GW+H+ R VA
Sbjct: 301 PKLSKGLPFVDWSIDLEWHNDEDWLTRWKNGETGYPIVDAAMRQLNQTGWMHNRLRMVVA 360
Query: 211 CFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKK 269
FLT+ DL + W +G+ F L+D D+A N G W W +++ Q +FR+++P++ G+K
Sbjct: 361 SFLTK-DLLIDWRKGEDYFMSKLIDGDYAANNGGWQWSASTGCDGQPYFRIFNPISQGEK 419
Query: 270 TD 271
D
Sbjct: 420 FD 421
>gi|257086709|ref|ZP_05581070.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis D6]
gi|422722487|ref|ZP_16779037.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2137]
gi|424673186|ref|ZP_18110129.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
599]
gi|256994739|gb|EEU82041.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis D6]
gi|315027232|gb|EFT39164.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2137]
gi|402352996|gb|EJU87832.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
599]
Length = 477
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 114/221 (51%), Gaps = 10/221 (4%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
+ IPL + GE A +RL + K +R +E P + T+ LS +L+ G LS+
Sbjct: 189 ARIPLTHYSVGEETARRRLNTFINQK--LRSYENKRDFP--YQDQTSHLSTFLRTGELSI 244
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R + EL A+ P + + ++ WR+FY ++ S P + + + W +
Sbjct: 245 RTIWQEL----ASAPSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWTND 300
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+ F++
Sbjct: 301 PEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEKYFQK 359
Query: 232 LLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTD 271
+L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 360 MLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 400
>gi|257059330|ref|YP_003137218.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
gi|256589496|gb|ACV00383.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8802]
Length = 481
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 121/234 (51%), Gaps = 10/234 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+PT+KE+G PL PG ET A +RL+ + ++++ P ++E T+ L
Sbjct: 190 LPTVKELGY-RWDYPLILSPG-ETAAAERLDYFCDAA--INEYQEQRNFP-AIE-GTSQL 243
Query: 101 SPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFDKM 157
SP LKFG + +R + K + + S++ ++ WREFY P +
Sbjct: 244 SPALKFGVIGIRTVWQATLKAMENSRSDEVRESIVTWQKELAWREFYQHCLYFFPELAEG 303
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ WD NE +AW GKTGYP +DA MRQL GW+H+ R VA FLT+ D
Sbjct: 304 PYREDFQDFPWDNNEVLFQAWCDGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTK-D 362
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
L ++W+ G+ F + L+D D A N G W W ++S + R+++P + +K D
Sbjct: 363 LMINWQWGEKYFMQTLIDGDLAANNGGWQWSASSGMDPKPLRIFNPASQAQKFD 416
>gi|229526306|ref|ZP_04415710.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis
VL426]
gi|229336464|gb|EEO01482.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis
VL426]
Length = 469
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 109/201 (54%), Gaps = 13/201 (6%)
Query: 77 KEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG 136
+E V+ + + P + T+ LSPYL G LS R L + G ++ L
Sbjct: 218 RERVQDYHQARDFP--AQEGTSSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLS 275
Query: 137 QIYWREFYYVVGSDTPNFDKMK-----GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAI 191
++ WREFY + + PN K + G ++ W+ NEK+ + W GKTGYP +DA
Sbjct: 276 ELIWREFYQHLVAIEPNLSKSRDFVEWGARLEW---WNDNEKF-QLWCEGKTGYPIVDAA 331
Query: 192 MRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS 251
MRQL GW+H+ R VA FLT+ DL++ W G+ F L+D D+A N G W W +++
Sbjct: 332 MRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCAST 390
Query: 252 AFFHQ-FFRVYSPVAFGKKTD 271
Q +FR+++PV+ G+K D
Sbjct: 391 GCDGQPYFRIFNPVSQGEKFD 411
>gi|229514567|ref|ZP_04404028.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21]
gi|229348547|gb|EEO13505.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21]
Length = 469
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 109/201 (54%), Gaps = 13/201 (6%)
Query: 77 KEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG 136
+E V+ + + P + T+ LSPYL G LS R L + G ++ L
Sbjct: 218 RERVQDYHQARDFP--AQEGTSSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLS 275
Query: 137 QIYWREFYYVVGSDTPNFDKMK-----GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAI 191
++ WREFY + + PN K + G ++ W+ NEK+ + W GKTGYP +DA
Sbjct: 276 ELIWREFYQHLVAIEPNLSKSRDFVEWGARLEW---WNDNEKF-QLWCEGKTGYPIVDAA 331
Query: 192 MRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS 251
MRQL GW+H+ R VA FLT+ DL++ W G+ F L+D D+A N G W W +++
Sbjct: 332 MRQLNQTGWMHNRLRMIVASFLTK-DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCAST 390
Query: 252 AFFHQ-FFRVYSPVAFGKKTD 271
Q +FR+++PV+ G+K D
Sbjct: 391 GCDGQPYFRIFNPVSQGEKFD 411
>gi|407278627|ref|ZP_11107097.1| deoxyribodipyrimidine photo-lyase [Rhodococcus sp. P14]
Length = 454
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 118/238 (49%), Gaps = 24/238 (10%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPS---T 97
VP + LD +++P P GE AL R + R + P+ + P T
Sbjct: 177 VPIPADDDLDGATLP----PAGEAAALHRWHE-------FRDDDLPHYDTDRDRPDLDRT 225
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
+ LSPYLKFGC+ R H+++ + G + L ++ WR+FY V P+ +
Sbjct: 226 SRLSPYLKFGCIHPRTLLHDVRSERSAGAN-----RLRSELAWRDFYADVLYHRPDTARR 280
Query: 158 KGNKICCQVDWDTN---EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
N+ + +D E+ AW G+TG+P +DA MRQL EGW+H+ R VA FL
Sbjct: 281 NYNRRFDDIAYDRGPDAERNFAAWKQGRTGFPIVDAGMRQLLAEGWMHNRLRMIVASFLA 340
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
+ DL+L W G F + L+D D A N W W + S +FRV++P+ G+K D
Sbjct: 341 K-DLHLPWWWGARHFMDRLVDGDLASNQHGWQWTAGSGTDAAPYFRVFNPLTQGEKFD 397
>gi|329904543|ref|ZP_08273850.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
gi|327547937|gb|EGF32686.1| Deoxyribodipyrimidine photolyase [Oxalobacteraceae bacterium
IMCC9480]
Length = 504
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 125/249 (50%), Gaps = 28/249 (11%)
Query: 36 PDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP 95
P H++PT+ E+G ++ K P G + + ++ + E + K+++ P P
Sbjct: 194 PVAHVMPTLAELGFAPTNFAQLKIPTGMSGGQQLVDNFM---ERIDKYKQTRDFPAIKGP 250
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVV-------- 147
S LS +L+FG +S+R + A + L ++ WR+FY+++
Sbjct: 251 S--YLSVHLRFGTVSIRHLARRACEAARIAADASGANTWLAELVWRDFYFMILQHHPRVV 308
Query: 148 -GSDTPNFDKMKGNKICCQVDWDTN---EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHH 203
G+ P++D ++ W+T + +AW G+TGYP +DA M Q+ G++H+
Sbjct: 309 HGAFKPDYDAIQ---------WETGPAADALFQAWCDGRTGYPLVDAAMAQINQTGYMHN 359
Query: 204 LARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYS 262
R ACFL + DL + W G++ F E L+D D + N G W W S+S Q +FR+++
Sbjct: 360 RLRMVTACFLIK-DLGIDWRRGEAYFAEKLIDFDLSANNGGWQWASSSGCDAQPYFRIFN 418
Query: 263 PVAFGKKTD 271
P+ +K D
Sbjct: 419 PITQSEKFD 427
>gi|262164645|ref|ZP_06032383.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223]
gi|262027025|gb|EEY45692.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223]
Length = 469
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 99/177 (55%), Gaps = 3/177 (1%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+VLSPYL G LS R L + A ++ L ++ WREFY + + PN K
Sbjct: 236 TSVLSPYLAIGALSARQCVARLYRESAMSALSEGAQVWLSELIWREFYQHLVAIEPNISK 295
Query: 157 MKGN-KICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
+ + +++W + + + W G TGYP +DA MRQL GW+H+ R VA FLT+
Sbjct: 296 SRDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL++ W G+ F L+D D+A N G W W +++ Q +FR+++PV+ G+K D
Sbjct: 356 -DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411
>gi|385680952|ref|ZP_10054880.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis sp. ATCC 39116]
Length = 433
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 97/179 (54%), Gaps = 7/179 (3%)
Query: 94 EPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPN 153
P+TT LSPYL++GC+ R +L H K SL ++ WREFY V P
Sbjct: 205 RPATTRLSPYLRWGCIHPRTLLADLDTR-----HGKDVESLRSELAWREFYADVLHHRPE 259
Query: 154 FDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
+ +K ++ +DT+++ + W G+TGYP +DA MRQL EGW+H+ R VA FL
Sbjct: 260 TARENYDKRFDKLAYDTDQESFDRWRDGRTGYPIVDAGMRQLLAEGWMHNRVRMIVASFL 319
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFF-HQFFRVYSPVAFGKKTD 271
+ DL+ W G F L+D D A N NW W++ + FFRV++P G+K D
Sbjct: 320 VK-DLHQPWWLGARHFMNHLVDGDLASNQLNWQWVAGTGTDPAPFFRVFNPTTQGEKFD 377
>gi|209559671|ref|YP_002286143.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes NZ131]
gi|209540872|gb|ACI61448.1| Putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
NZ131]
Length = 469
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 98/176 (55%), Gaps = 6/176 (3%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSP+L+ G + +R YH +++ P++ + L ++ WR+FY +V P+
Sbjct: 228 TSRLSPFLRIGAIGIRTVYHAVRQ----APNSLGQATFLKELAWRDFYNMVYVAYPDQKT 283
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K Q++W N + + W GKTGYP +DA M QL+ GW+H+ R VA FLT+
Sbjct: 284 QPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTK- 342
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL G+ F++ L+D D A N G W W +++ +FR+++PV GK+ D
Sbjct: 343 DLLCDGRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 398
>gi|170079382|ref|YP_001736020.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
gi|169887051|gb|ACB00765.1| deoxyribopyrimidine photolyase [Synechococcus sp. PCC 7002]
Length = 477
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 127/261 (48%), Gaps = 18/261 (6%)
Query: 22 APTSLPRECQGILHPDEHL--------VPTMKEMGLDESSIPLCKFPGGETEALKRLEKS 73
AP + R+CQG+ ++ L +PT+ ++G P P GET +L +L++
Sbjct: 163 APVTALRDCQGLSDAEQKLAKDLGAIALPTLADLGFSWDK-PFT-VPVGETASLGQLDRF 220
Query: 74 LANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVS 133
N ++ K++ P + T+ LS LKFG + +R + + L +
Sbjct: 221 TEN--FIEKYDGDRNFPAT--DGTSRLSAALKFGAIGIRTVWQATETALNHCRSKEAEAG 276
Query: 134 LLG---QIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDA 190
++ ++ WREFY P + + W+ +E+ +AW G+TGYP IDA
Sbjct: 277 VITWQQELAWREFYQHCLFFFPELAQGPYREEFKDFPWENDEEKFQAWCAGQTGYPIIDA 336
Query: 191 IMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSA 250
MRQL GW+H+ R VA FLT+ DL + W G+ F + L+D D A N G W W ++
Sbjct: 337 AMRQLNETGWMHNRCRMIVASFLTK-DLIIDWRWGEKYFMQTLVDGDLAANNGGWQWSAS 395
Query: 251 SAFFHQFFRVYSPVAFGKKTD 271
S + R+++P +K D
Sbjct: 396 SGMDPKPLRIFNPYTQAQKFD 416
>gi|258622171|ref|ZP_05717197.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM573]
gi|424808742|ref|ZP_18234131.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus SX-4]
gi|258585495|gb|EEW10218.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM573]
gi|342323694|gb|EGU19477.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus SX-4]
Length = 469
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 99/177 (55%), Gaps = 3/177 (1%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+VLSPYL G LS R L + A ++ L ++ WREFY + + PN K
Sbjct: 236 TSVLSPYLAIGALSARQCVARLYRESAMSALSEGAQVWLSELIWREFYQHLVAIEPNISK 295
Query: 157 MKGN-KICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
+ + +++W + + + W G TGYP +DA MRQL GW+H+ R VA FLT+
Sbjct: 296 SRDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL++ W G+ F L+D D+A N G W W +++ Q +FR+++PV+ G+K D
Sbjct: 356 -DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411
>gi|258624237|ref|ZP_05719186.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM603]
gi|258583388|gb|EEW08188.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM603]
Length = 469
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 99/177 (55%), Gaps = 3/177 (1%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+VLSPYL G LS R L + A ++ L ++ WREFY + + PN K
Sbjct: 236 TSVLSPYLAIGALSARQCVARLYRESAMSALSEGAQVWLSELIWREFYQHLVAIEPNISK 295
Query: 157 MKGN-KICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
+ + +++W + + + W G TGYP +DA MRQL GW+H+ R VA FLT+
Sbjct: 296 SRDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL++ W G+ F L+D D+A N G W W +++ Q +FR+++PV+ G+K D
Sbjct: 356 -DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411
>gi|443927307|gb|ELU45814.1| cryptochrome-2 [Rhizoctonia solani AG-1 IA]
Length = 572
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/170 (43%), Positives = 99/170 (58%), Gaps = 36/170 (21%)
Query: 87 NTAPNSLEPSTTVLSPYLKFGCLSVR---------LFYHELK-------KILATGPH-AK 129
+T + PSTT++SPYLKFGC+ VR L Y EL + P AK
Sbjct: 290 DTQIDVTRPSTTLMSPYLKFGCVGVRECYWSWHDILVYVELHCPYDCSHIVPRNAPKSAK 349
Query: 130 PPVSLLGQIYWREFYYV------VGSDTPNFDKMKGNKICCQVDWDTN---EKYLEAWSH 180
P +LLGQ+ EF Y+ V SD G+++ + D + E++L AW+
Sbjct: 350 KPENLLGQL---EFSYIPWRCQTVYSD-------DGDQVIPRPKDDQHPQAEEWLAAWAE 399
Query: 181 GKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFE 230
G+TG+P+IDA+MRQLR EGW+HHL RH+VACFLTRG Y+SWE G VF+
Sbjct: 400 GRTGFPWIDALMRQLREEGWMHHLGRHSVACFLTRGQCYISWERGAEVFD 449
>gi|422920343|ref|ZP_16953666.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae BJG-01]
gi|341650406|gb|EGS74272.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae BJG-01]
Length = 469
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 101/181 (55%), Gaps = 11/181 (6%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSPYL G LS R L + G ++ L ++ WREFY + + PN K
Sbjct: 236 TSSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295
Query: 157 MK-----GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVAC 211
+ G ++ W+ NEK+ + W GKTGYP +DA MRQL GW+H+ R VA
Sbjct: 296 SRDFVEWGARLEW---WNDNEKF-QLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351
Query: 212 FLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKT 270
FLT+ DL++ W G+ F L+D D+A N G W W +++ Q +FR+++PV+ G+K
Sbjct: 352 FLTK-DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKF 410
Query: 271 D 271
D
Sbjct: 411 D 411
>gi|428203429|ref|YP_007082018.1| DASH family cryptochrome [Pleurocapsa sp. PCC 7327]
gi|427980861|gb|AFY78461.1| cryptochrome, DASH family [Pleurocapsa sp. PCC 7327]
Length = 488
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 130/271 (47%), Gaps = 16/271 (5%)
Query: 4 QKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDE---SSIPLCKFP 60
+K ++ +LP P+ P P E +P + E+G++E + KF
Sbjct: 163 EKKSTIDPTLPSPQKLPPLPKVEPGE-----------IPQLLELGIEELIFDERAVLKFQ 211
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKK 120
GGET+ L RL K+ +R +++ L+ S+ SP+L GCLS RL Y +++K
Sbjct: 212 GGETKGLVRLHNYFWEKDCLRTYKETRNGMLGLDYSSK-FSPWLALGCLSPRLIYEQVQK 270
Query: 121 ILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSH 180
+ L+ ++ WR+F+ + + N K + W + K + W
Sbjct: 271 YESERIKNDSTYWLVFELMWRDFFRFICAKHGNRIFRKSGLQGLDIPWKEDWKRFQLWQE 330
Query: 181 GKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAM 240
GKTGYP +DA MR+L G++ + R VA FLT+ +L ++W+ G FE LL+D D
Sbjct: 331 GKTGYPLVDANMRELAATGFMSNRGRQNVASFLTK-NLGINWQMGAEWFESLLIDYDVCS 389
Query: 241 NAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
N GNW + + + FR ++ + K D
Sbjct: 390 NYGNWNYTAGVGNDARGFRYFNVLKQSKDYD 420
>gi|183179740|ref|ZP_02957951.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-3]
gi|183013151|gb|EDT88451.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-3]
Length = 469
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 101/181 (55%), Gaps = 11/181 (6%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSPYL G LS R L + G ++ L ++ WREFY + + PN K
Sbjct: 236 TSSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295
Query: 157 MK-----GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVAC 211
+ G ++ W+ NEK+ + W GKTGYP +DA MRQL GW+H+ R VA
Sbjct: 296 SRDFVEWGARLEW---WNDNEKF-QLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351
Query: 212 FLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKT 270
FLT+ DL++ W G+ F L+D D+A N G W W +++ Q +FR+++PV+ G+K
Sbjct: 352 FLTK-DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKF 410
Query: 271 D 271
D
Sbjct: 411 D 411
>gi|153212812|ref|ZP_01948448.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 1587]
gi|422306345|ref|ZP_16393526.1| DNA photolyase family protein [Vibrio cholerae CP1035(8)]
gi|124116325|gb|EAY35145.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 1587]
gi|408626618|gb|EKK99461.1| DNA photolyase family protein [Vibrio cholerae CP1035(8)]
Length = 469
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 101/181 (55%), Gaps = 11/181 (6%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSPYL G LS R L + G ++ L ++ WREFY + + PN K
Sbjct: 236 TSSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295
Query: 157 MK-----GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVAC 211
+ G ++ W+ NEK+ + W GKTGYP +DA MRQL GW+H+ R VA
Sbjct: 296 SRDFVEWGARLEW---WNDNEKF-QLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351
Query: 212 FLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKT 270
FLT+ DL++ W G+ F L+D D+A N G W W +++ Q +FR+++PV+ G+K
Sbjct: 352 FLTK-DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKF 410
Query: 271 D 271
D
Sbjct: 411 D 411
>gi|384422583|ref|YP_005631942.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae LMA3984-4]
gi|327485291|gb|AEA79697.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae LMA3984-4]
Length = 469
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 101/181 (55%), Gaps = 11/181 (6%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSPYL G LS R L + G ++ L ++ WREFY + + PN K
Sbjct: 236 TSSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295
Query: 157 MK-----GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVAC 211
+ G ++ W+ NEK+ + W GKTGYP +DA MRQL GW+H+ R VA
Sbjct: 296 SRDFVEWGARLEW---WNDNEKF-QLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351
Query: 212 FLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKT 270
FLT+ DL++ W G+ F L+D D+A N G W W +++ Q +FR+++PV+ G+K
Sbjct: 352 FLTK-DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKF 410
Query: 271 D 271
D
Sbjct: 411 D 411
>gi|218231250|ref|YP_002367872.1| deoxyribodipyrimidine photolyase [Bacillus cereus B4264]
gi|218159207|gb|ACK59199.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus B4264]
Length = 476
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 115/214 (53%), Gaps = 9/214 (4%)
Query: 63 ETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKIL 122
E A K +K ++K + + + PN + + ++L+PYL FG +SV+L YH L
Sbjct: 201 EEGAYKTFKKFFSSK--LASYSEGRDFPN--QNAHSMLAPYLSFGQISVKLMYHYLINKS 256
Query: 123 ATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
+ K +S + Q+ WREF Y + P NK W+ E+ L W
Sbjct: 257 TERQCSFFEKQVISFIRQLIWREFSYYLLYHYPFTAYKPLNKNFEHFPWNKEEELLRVWQ 316
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
G+TGYPFIDA MR+L G++H+ AR AVA FL + L + W+EG F + LLDAD A
Sbjct: 317 KGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIA 375
Query: 240 MNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
N W W++ S A +FR+++P+ G+K DK
Sbjct: 376 NNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|86607703|ref|YP_476465.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556245|gb|ABD01202.1| deoxyribodipyrimidine photolyase [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 487
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 128/265 (48%), Gaps = 19/265 (7%)
Query: 12 SLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLC--KFPGGETEALKR 69
SLPKP P +P+ Q + +PT+ ++G +C + P A +
Sbjct: 158 SLPKPDP-----YPIPKGLQPVSGLKAQPLPTLADLGF------VCDQRIPAAGEAAAQA 206
Query: 70 LEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAK 129
L + + +E+ P EP T++LSP+L +G + +R + +++ A +
Sbjct: 207 LLEDFCQGLRILDYERARNFPA--EPGTSLLSPHLCWGTIGIRQVWQATREVEAEVRSQE 264
Query: 130 PPVSL---LGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYP 186
SL ++ WREFY V + P+ + + ++WD + + +AW G+TGYP
Sbjct: 265 AESSLQTWRQELCWREFYKHVLAHWPHVETGAYRRAFDALEWDNRQDWFQAWCTGQTGYP 324
Query: 187 FIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWM 246
+DA MRQL GW+H+ R VA FLT+ DL + W G+ F + L+D D A N G W
Sbjct: 325 IVDAAMRQLNETGWMHNRCRMIVASFLTK-DLLIDWRWGERYFMQKLVDGDLAANNGGWQ 383
Query: 247 WLSASAFFHQFFRVYSPVAFGKKTD 271
W ++ + R+++P + D
Sbjct: 384 WSASVGTDPKPLRIFNPATQAARYD 408
>gi|15600828|ref|NP_232458.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121585968|ref|ZP_01675761.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 2740-80]
gi|153820061|ref|ZP_01972728.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae NCTC 8457]
gi|227811685|ref|YP_002811695.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
gi|229506767|ref|ZP_04396276.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286]
gi|229510438|ref|ZP_04399918.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33]
gi|229517431|ref|ZP_04406876.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9]
gi|229605241|ref|YP_002875945.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236]
gi|254850324|ref|ZP_05239674.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10]
gi|255746116|ref|ZP_05420063.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101]
gi|262158603|ref|ZP_06029717.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1]
gi|298499922|ref|ZP_07009728.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757]
gi|360038062|ref|YP_004939824.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae O1 str.
2010EL-1786]
gi|379743509|ref|YP_005334561.1| deoxyribodipyrimidine photolyase [Vibrio cholerae IEC224]
gi|417812104|ref|ZP_12458765.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-49A2]
gi|417816596|ref|ZP_12463226.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HCUF01]
gi|418329963|ref|ZP_12940997.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-06A1]
gi|418337496|ref|ZP_12946391.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-23A1]
gi|418339492|ref|ZP_12948380.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-28A1]
gi|418349168|ref|ZP_12953900.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43A1]
gi|418353785|ref|ZP_12956510.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-61A1]
gi|419824099|ref|ZP_14347628.1| DNA photolyase family protein [Vibrio cholerae CP1033(6)]
gi|421316788|ref|ZP_15767358.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1032(5)]
gi|421319836|ref|ZP_15770394.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1038(11)]
gi|421323878|ref|ZP_15774405.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1041(14)]
gi|421326850|ref|ZP_15777368.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1042(15)]
gi|421331937|ref|ZP_15782416.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1046(19)]
gi|421335570|ref|ZP_15786033.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1048(21)]
gi|421341106|ref|ZP_15791536.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-20A2]
gi|421346109|ref|ZP_15796493.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46A1]
gi|422885232|ref|ZP_16931672.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-40A1]
gi|422897943|ref|ZP_16935363.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48A1]
gi|422904100|ref|ZP_16939052.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-70A1]
gi|422915375|ref|ZP_16949824.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HFU-02]
gi|422926998|ref|ZP_16960003.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-38A1]
gi|423146338|ref|ZP_17133906.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-19A1]
gi|423148099|ref|ZP_17135477.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-21A1]
gi|423151885|ref|ZP_17139116.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-22A1]
gi|423158508|ref|ZP_17145521.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-32A1]
gi|423162314|ref|ZP_17149186.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-33A2]
gi|423162508|ref|ZP_17149374.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48B2]
gi|423732330|ref|ZP_17705627.1| DNA photolyase family protein [Vibrio cholerae HC-17A1]
gi|423736965|ref|ZP_17710078.1| DNA photolyase family protein [Vibrio cholerae HC-50A2]
gi|423900591|ref|ZP_17727949.1| DNA photolyase family protein [Vibrio cholerae HC-62A1]
gi|423912133|ref|ZP_17728649.1| DNA photolyase family protein [Vibrio cholerae HC-77A1]
gi|423999959|ref|ZP_17743116.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-17A2]
gi|424004591|ref|ZP_17747596.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-37A1]
gi|424021751|ref|ZP_17761460.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-62B1]
gi|424028401|ref|ZP_17767998.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-69A1]
gi|424587687|ref|ZP_18027259.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1030(3)]
gi|424592498|ref|ZP_18031913.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1040(13)]
gi|424596361|ref|ZP_18035668.1| deoxyribodipyrimidine photo-lyase [Vibrio Cholerae CP1044(17)]
gi|424603214|ref|ZP_18042348.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1047(20)]
gi|424605046|ref|ZP_18044033.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1050(23)]
gi|424607951|ref|ZP_18046885.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-39A1]
gi|424614591|ref|ZP_18053371.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-41A1]
gi|424617076|ref|ZP_18055761.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-42A1]
gi|424620972|ref|ZP_18059501.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-47A1]
gi|424643041|ref|ZP_18080819.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-56A2]
gi|424650106|ref|ZP_18087709.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-57A2]
gi|424654938|ref|ZP_18092256.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A2]
gi|440711204|ref|ZP_20891845.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 4260B]
gi|443505134|ref|ZP_21072075.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-64A1]
gi|443509033|ref|ZP_21075783.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-65A1]
gi|443512877|ref|ZP_21079500.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-67A1]
gi|443516423|ref|ZP_21082923.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-68A1]
gi|443521124|ref|ZP_21087454.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-71A1]
gi|443521284|ref|ZP_21087606.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-72A2]
gi|443530056|ref|ZP_21096073.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-7A1]
gi|443532706|ref|ZP_21098709.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-80A1]
gi|443537421|ref|ZP_21103279.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A1]
gi|449057517|ref|ZP_21735813.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae O1 str. Inaba
G4222]
gi|81858027|sp|Q9KNA8.1|PHR_VIBCH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|9657440|gb|AAF95971.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121549904|gb|EAX59924.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 2740-80]
gi|126509396|gb|EAZ71990.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae NCTC 8457]
gi|227010827|gb|ACP07038.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
gi|229345467|gb|EEO10440.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9]
gi|229352883|gb|EEO17823.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33]
gi|229357118|gb|EEO22036.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286]
gi|229371727|gb|ACQ62149.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236]
gi|254846029|gb|EET24443.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10]
gi|255735870|gb|EET91268.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101]
gi|262029483|gb|EEY48133.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1]
gi|297541903|gb|EFH77954.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757]
gi|340039746|gb|EGR00719.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HCUF01]
gi|340044924|gb|EGR05872.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-49A2]
gi|341630144|gb|EGS55247.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-70A1]
gi|341631059|gb|EGS56000.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-40A1]
gi|341631141|gb|EGS56081.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48A1]
gi|341631864|gb|EGS56740.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HFU-02]
gi|341645075|gb|EGS69231.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-38A1]
gi|356421241|gb|EHH74744.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-19A1]
gi|356424231|gb|EHH77646.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-21A1]
gi|356426470|gb|EHH79778.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-06A1]
gi|356430880|gb|EHH84085.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-23A1]
gi|356434968|gb|EHH88128.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-32A1]
gi|356436434|gb|EHH89548.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-22A1]
gi|356440411|gb|EHH93352.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-33A2]
gi|356442892|gb|EHH95725.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-28A1]
gi|356446030|gb|EHH98830.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43A1]
gi|356454850|gb|EHI07497.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-61A1]
gi|356457717|gb|EHI10224.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48B2]
gi|356649216|gb|AET29270.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae O1 str.
2010EL-1786]
gi|378796103|gb|AFC59573.1| deoxyribodipyrimidine photolyase [Vibrio cholerae IEC224]
gi|395919246|gb|EJH30069.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1032(5)]
gi|395921892|gb|EJH32711.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1041(14)]
gi|395924724|gb|EJH35526.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1038(11)]
gi|395930735|gb|EJH41481.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1046(19)]
gi|395933775|gb|EJH44514.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1042(15)]
gi|395935252|gb|EJH45987.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1048(21)]
gi|395938590|gb|EJH49282.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-20A2]
gi|395947636|gb|EJH58291.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46A1]
gi|395964476|gb|EJH74693.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-42A1]
gi|395966295|gb|EJH76422.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-56A2]
gi|395969260|gb|EJH79147.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-57A2]
gi|395971527|gb|EJH81187.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1030(3)]
gi|395973176|gb|EJH82746.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1047(20)]
gi|395975239|gb|EJH84735.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-47A1]
gi|408009783|gb|EKG47676.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-41A1]
gi|408015828|gb|EKG53399.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-39A1]
gi|408043105|gb|EKG79126.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1040(13)]
gi|408048055|gb|EKG83526.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1050(23)]
gi|408049864|gb|EKG85052.1| deoxyribodipyrimidine photo-lyase [Vibrio Cholerae CP1044(17)]
gi|408058760|gb|EKG93545.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A2]
gi|408613762|gb|EKK87048.1| DNA photolyase family protein [Vibrio cholerae CP1033(6)]
gi|408620829|gb|EKK93833.1| DNA photolyase family protein [Vibrio cholerae HC-17A1]
gi|408652134|gb|EKL23366.1| DNA photolyase family protein [Vibrio cholerae HC-50A2]
gi|408653028|gb|EKL24205.1| DNA photolyase family protein [Vibrio cholerae HC-62A1]
gi|408664204|gb|EKL35043.1| DNA photolyase family protein [Vibrio cholerae HC-77A1]
gi|408850645|gb|EKL90594.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-37A1]
gi|408854708|gb|EKL94456.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-17A2]
gi|408877826|gb|EKM16851.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-69A1]
gi|408880773|gb|EKM19691.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-62B1]
gi|439972691|gb|ELP48934.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 4260B]
gi|443430432|gb|ELS73001.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-64A1]
gi|443434270|gb|ELS80427.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-65A1]
gi|443438064|gb|ELS87794.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-67A1]
gi|443442174|gb|ELS95487.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-68A1]
gi|443445153|gb|ELT01875.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-71A1]
gi|443452607|gb|ELT12789.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-72A2]
gi|443459626|gb|ELT27020.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-7A1]
gi|443464052|gb|ELT35000.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-80A1]
gi|443467430|gb|ELT42086.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A1]
gi|448263228|gb|EMB00475.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae O1 str. Inaba
G4222]
Length = 469
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 101/181 (55%), Gaps = 11/181 (6%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSPYL G LS R L + G ++ L ++ WREFY + + PN K
Sbjct: 236 TSSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295
Query: 157 MK-----GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVAC 211
+ G ++ W+ NEK+ + W GKTGYP +DA MRQL GW+H+ R VA
Sbjct: 296 SRDFVEWGARLEW---WNDNEKF-QLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351
Query: 212 FLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKT 270
FLT+ DL++ W G+ F L+D D+A N G W W +++ Q +FR+++PV+ G+K
Sbjct: 352 FLTK-DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKF 410
Query: 271 D 271
D
Sbjct: 411 D 411
>gi|229527954|ref|ZP_04417345.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)]
gi|229334316|gb|EEN99801.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)]
Length = 469
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 101/181 (55%), Gaps = 11/181 (6%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSPYL G LS R L + G ++ L ++ WREFY + + PN K
Sbjct: 236 TSSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295
Query: 157 MK-----GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVAC 211
+ G ++ W+ NEK+ + W GKTGYP +DA MRQL GW+H+ R VA
Sbjct: 296 SRDFVEWGARLEW---WNDNEKF-QLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351
Query: 212 FLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKT 270
FLT+ DL++ W G+ F L+D D+A N G W W +++ Q +FR+++PV+ G+K
Sbjct: 352 FLTK-DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKF 410
Query: 271 D 271
D
Sbjct: 411 D 411
>gi|423636149|ref|ZP_17611802.1| hypothetical protein IK7_02558 [Bacillus cereus VD156]
gi|401276137|gb|EJR82094.1| hypothetical protein IK7_02558 [Bacillus cereus VD156]
Length = 476
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 99/179 (55%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG + V+L YH L K +S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQIPVKLMYHYLINKSTERQCSLFEKQVISFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKNFEHFPWNKEEELLRVWQRGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L +SW+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLISWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|317491170|ref|ZP_07949606.1| DNA photolyase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920717|gb|EFV42040.1| DNA photolyase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 476
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 130/277 (46%), Gaps = 32/277 (11%)
Query: 4 QKLV-SVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGG 62
Q+L S + SLP PK + A C+ + +K + + FP G
Sbjct: 162 QRLTHSDVRSLPAPKTREQA-------CE---------MSEIKPFDYSQQGLDSVLFPAG 205
Query: 63 ETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKIL 122
E AL+RL + +E V+ + + P T+VLSPYL G LS R L ++L
Sbjct: 206 EEAALQRLR--VFCREHVQDYAQQRDIPAV--DGTSVLSPYLAVGVLSPR---QCLNRLL 258
Query: 123 ATGPHA-----KPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKI-CCQVDWDTNEKYLE 176
A P L ++ WREFY + P + K V W + ++L
Sbjct: 259 AECPDTLEDGESGAFVWLNELVWREFYRHLLVAHPKLCRHKPFIAWTDHVHWSGDIEHLT 318
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
AW G+TGYP +DA MRQL GW+H+ R VA FL + DL ++W G+ F L+D
Sbjct: 319 AWQQGETGYPIVDAAMRQLNHTGWMHNRLRMIVASFLVK-DLLINWRAGERYFMSQLIDG 377
Query: 237 DWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
D A N G W W ++S +FR+++P G++ DK
Sbjct: 378 DLAANNGGWQWAASSGTDAAPYFRIFNPTTQGERFDK 414
>gi|297579803|ref|ZP_06941730.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC385]
gi|297535449|gb|EFH74283.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC385]
Length = 469
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 101/181 (55%), Gaps = 11/181 (6%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSPYL G LS R L + G ++ L ++ WREFY + + PN K
Sbjct: 236 TSSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295
Query: 157 MK-----GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVAC 211
+ G ++ W+ NEK+ + W GKTGYP +DA MRQL GW+H+ R VA
Sbjct: 296 SRDFVEWGARLEW---WNDNEKF-QLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351
Query: 212 FLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKT 270
FLT+ DL++ W G+ F L+D D+A N G W W +++ Q +FR+++PV+ G+K
Sbjct: 352 FLTK-DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKF 410
Query: 271 D 271
D
Sbjct: 411 D 411
>gi|229179435|ref|ZP_04306788.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W]
gi|228603936|gb|EEK61404.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W]
Length = 476
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 115/214 (53%), Gaps = 9/214 (4%)
Query: 63 ETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKIL 122
E A K +K ++K + + + PN + + ++L+PYL FG +SV+L YH L
Sbjct: 201 EEGAYKTFKKFFSSK--LASYSEGRDFPN--QNAHSMLAPYLSFGQISVKLMYHYLINKS 256
Query: 123 ATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
+ K +S + Q+ WREF Y + P NK W+ E+ L W
Sbjct: 257 TERQCSFFEKQVISFIRQLIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNKEEELLRVWQ 316
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
G+TGYPFIDA MR+L G++H+ AR AVA FL + L + W+EG F + LLDAD A
Sbjct: 317 KGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIA 375
Query: 240 MNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
N W W++ S A +FR+++P+ G+K DK
Sbjct: 376 NNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|372487277|ref|YP_005026842.1| deoxyribodipyrimidine photolyase [Dechlorosoma suillum PS]
gi|359353830|gb|AEV25001.1| deoxyribodipyrimidine photolyase [Dechlorosoma suillum PS]
Length = 482
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 119/237 (50%), Gaps = 12/237 (5%)
Query: 36 PDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP 95
PD VP++ ++G + + G + R + ++ + ++ + P
Sbjct: 182 PDGGGVPSLADIGFLPTDLERIGVVPGMSGGAARWQDF---RQRLERYAEQRDFPAV--K 236
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+ LS YL+FGCLS+R E + + GP A + L ++ WR+FY++V P
Sbjct: 237 GVSYLSVYLRFGCLSIRQLAGEAWR--SGGPGA---ATWLSELIWRDFYFMVLDRFPQLP 291
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
+V WD L AW G+TGYP +DA MRQL GW+H+ R VA FLT+
Sbjct: 292 DGCFKPEFDRVLWDEAPALLAAWREGRTGYPLVDAAMRQLAQTGWMHNRLRMVVASFLTK 351
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL L W G+ F +LLLD D + N G W W +++ Q +FR+++PV +K D
Sbjct: 352 -DLGLDWRLGEGHFADLLLDFDLSANNGGWQWAASTGCDAQPWFRIFNPVTQSEKFD 407
>gi|429084580|ref|ZP_19147582.1| Deoxyribodipyrimidine photolyase [Cronobacter condimenti 1330]
gi|426546419|emb|CCJ73623.1| Deoxyribodipyrimidine photolyase [Cronobacter condimenti 1330]
Length = 473
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 106/217 (48%), Gaps = 11/217 (5%)
Query: 59 FPGGETEALKRLEK--SLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
FP GE ALKRL A ++ K + P T++LSPYL G LS R H
Sbjct: 203 FPAGEEAALKRLRDFCQTAAGDYPEKRDFPAIR------GTSLLSPYLAIGVLSPRQCLH 256
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYL 175
L L ++ WREFY + P+ + + +V W N+ +
Sbjct: 257 RLLTEHPRAAEGGSGAVWLNELIWREFYRHLIVAWPHLCRHQPFIDWTARVAWQRNDAHF 316
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
+AW G TGYP +DA MRQ+++ GW+H+ R A FL + DL + W G+ F L+D
Sbjct: 317 QAWCEGNTGYPIVDAAMRQMKVTGWMHNRLRMITASFLVK-DLLVDWRRGERYFMSQLID 375
Query: 236 ADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D+A N G W W +++ +FR+++P G++ D
Sbjct: 376 GDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFD 412
>gi|229191248|ref|ZP_04318236.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876]
gi|228592263|gb|EEK50094.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876]
Length = 476
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 115/214 (53%), Gaps = 9/214 (4%)
Query: 63 ETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKIL 122
E A K +K ++K + + + PN + + ++L+PYL FG +SV+L YH L
Sbjct: 201 EEGAYKTFKKFFSSK--LASYSEGRDFPN--QNAHSMLAPYLSFGQISVKLMYHYLINKS 256
Query: 123 ATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
+ K +S + Q+ WREF Y + P NK W+ E+ L W
Sbjct: 257 TERQCSFFEKQVISFIRQLIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNKEEELLRVWQ 316
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
G+TGYPFIDA MR+L G++H+ AR AVA FL + L + W+EG F + LLDAD A
Sbjct: 317 KGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIA 375
Query: 240 MNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
N W W++ S A +FR+++P+ G+K DK
Sbjct: 376 NNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|443328462|ref|ZP_21057059.1| deoxyribodipyrimidine photolyase [Xenococcus sp. PCC 7305]
gi|442791916|gb|ELS01406.1| deoxyribodipyrimidine photolyase [Xenococcus sp. PCC 7305]
Length = 474
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 120/234 (51%), Gaps = 10/234 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+PT +++G + PL PG ET A RLE+ + + ++++ P T++L
Sbjct: 190 LPTAEDLGYSWET-PLLLAPG-ETAAQARLEE--FSHSAIYQYDEQRNFP--FNQGTSLL 243
Query: 101 SPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFDKM 157
S LKFG +S+R + + L + V+++ ++ WREFY P ++
Sbjct: 244 SAALKFGVISLRAIWQTTVEALENCRSEEARVNVITWQKELAWREFYQHCLYFFPELEQG 303
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
WD N ++ +AW GKTGYP +DA MRQL+ GW+H+ R VA FLT+ D
Sbjct: 304 PYRPAFKNFPWDNNPEHFQAWCQGKTGYPIVDAAMRQLQSTGWMHNRCRMIVASFLTK-D 362
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
L + W G+ F + L D D A N G W W ++S + R+++P + +K D
Sbjct: 363 LIIDWRWGEKYFMQTLFDGDLASNNGGWQWSASSGMDPKPLRIFNPASQAQKFD 416
>gi|448474041|ref|ZP_21602009.1| deoxyribodipyrimidine photolyase [Halorubrum aidingense JCM 13560]
gi|445818321|gb|EMA68180.1| deoxyribodipyrimidine photolyase [Halorubrum aidingense JCM 13560]
Length = 504
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 115/239 (48%), Gaps = 15/239 (6%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+P + E+G E + P G A RL L+ E V ++ P +T+ L
Sbjct: 206 LPALTELGFAEPDAEIG--PAGTEAARDRLGAFLS--EAVFAYDAARDYP--AREATSRL 259
Query: 101 SPYLKFGCLSVRLFYHELKKILATGP-------HAKPPVSLLGQIYWREFYYVVGSDTPN 153
S +LK+G + VR Y ++ +A HA+ Q+ WREFY V P
Sbjct: 260 SAFLKYGEIGVREVYEATERAMAAAESDDRPAEHAESVAEYQQQLAWREFYTQVLYHNPE 319
Query: 154 FDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
++W + + + AW G+TGYP +DA MRQLR E ++H+ R VA FL
Sbjct: 320 VVTENYKAYEAGIEWRDDPEEIAAWKRGETGYPIVDAGMRQLRAEAFMHNRVRMIVASFL 379
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
T+ DL W +G F E L D D A + G W W +++ Q +FR+++P+ G++ D
Sbjct: 380 TK-DLLADWRQGYEYFRETLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYD 437
>gi|218246283|ref|YP_002371654.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
gi|218166761|gb|ACK65498.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 8801]
Length = 481
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 121/234 (51%), Gaps = 10/234 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+PT++E+G PL PG ET A +RL+ + ++++ P ++E T+ L
Sbjct: 190 LPTVQELGY-RWDYPLILSPG-ETAAAERLDYFCDAA--INEYQEQRNFP-AIE-GTSQL 243
Query: 101 SPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFDKM 157
SP LKFG + +R + K + + S++ ++ WREFY P +
Sbjct: 244 SPALKFGVIGIRTVWQATLKAMENSRSDEVRESIVTWQKELAWREFYQHCLYFFPELAEG 303
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ WD NE +AW GKTGYP +DA MRQL GW+H+ R VA FLT+ D
Sbjct: 304 PYREDFQDFPWDNNEVLFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTK-D 362
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
L ++W+ G+ F + L+D D A N G W W ++S + R+++P + +K D
Sbjct: 363 LMINWQWGEKYFMQTLIDGDLAANNGGWQWSASSGMDPKPLRIFNPASQAQKFD 416
>gi|428320773|ref|YP_007118655.1| deoxyribodipyrimidine photo-lyase type I [Oscillatoria
nigro-viridis PCC 7112]
gi|428244453|gb|AFZ10239.1| deoxyribodipyrimidine photo-lyase type I [Oscillatoria
nigro-viridis PCC 7112]
Length = 484
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 131/276 (47%), Gaps = 27/276 (9%)
Query: 12 SLPKPKPADDAP-------TSLPRECQGILHPDEHL--VPTMKEMGLDESSIPLCKFPGG 62
S PK +P + P T L E Q I + + VPT +G + PL PG
Sbjct: 161 SKPKAQPVETLPITYLELMTGLTAEEQAIANQAGAMETVPTALSLGFIWEN-PLVIEPG- 218
Query: 63 ETEALKRLE----KSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
E A ++LE +++ + R F N T+ LS LKFG + +R +
Sbjct: 219 EDAAQQKLEEFCDRAIYEYQGQRNFPAIN--------GTSQLSAALKFGAIGIRTVWQAT 270
Query: 119 KKILATGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
+ ++ T + S+ +I WREFY + P + W+ +EK
Sbjct: 271 QIVMDTCRSEEACTSIRTWQQEIAWREFYQHAMYNFPELADGPYRQAFKDFPWENDEKLF 330
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
+AW GKTGYP IDA MRQL GW+H+ R VA FLT+ DL ++W+ G+ F + L+D
Sbjct: 331 QAWCRGKTGYPIIDAAMRQLNQTGWMHNRCRMIVASFLTK-DLMINWQWGEKYFMQKLID 389
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
D + N G W W ++S + R+++P + +K D
Sbjct: 390 GDLSANNGGWQWSASSGMDPKPLRIFNPGSQAQKFD 425
>gi|300864867|ref|ZP_07109715.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506]
gi|300337160|emb|CBN54865.1| deoxyribopyrimidine photolyase [Oscillatoria sp. PCC 6506]
Length = 482
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 132/271 (48%), Gaps = 18/271 (6%)
Query: 12 SLPKPKPADDAPTSLPRECQGILHPDEHL--------VPTMKEMGLDESSIPLCKFPGGE 63
S PK +P D P + G+ ++ + +P+ KE+G ++ PL PG E
Sbjct: 158 SKPKAEPVDTLPIMSLEQLTGLTAKEQEIAKLSGTIRLPSAKELGFVWNA-PLIIEPG-E 215
Query: 64 TEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILA 123
A ++L+ + ++K P +L+ T+ LS LKFG + +R + ++
Sbjct: 216 DGAQEKLDDFCDRA--IYDYDKQRNFP-ALD-GTSQLSAALKFGAIGIRTVWQATVTVME 271
Query: 124 TGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSH 180
+++ ++ WREFY + P + WD N++ +AW
Sbjct: 272 KCHTEAARINIQTWQQELAWREFYQHAMYNFPELANGAYREAFKDFPWDNNQELFQAWCE 331
Query: 181 GKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAM 240
GKTGYP IDA MRQ+ GW+H+ R VA FLT+ DL ++W+ G+ F + L+D D +
Sbjct: 332 GKTGYPIIDAAMRQMNQTGWMHNRCRMIVASFLTK-DLIINWQWGEKYFMQNLIDGDLSA 390
Query: 241 NAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
N G W W ++S + R+++P G+K D
Sbjct: 391 NNGGWQWSASSGMDPKPLRIFNPFTQGQKFD 421
>gi|304321394|ref|YP_003855037.1| blue light photoreceptor cryptochrome [Parvularcula bermudensis
HTCC2503]
gi|303300296|gb|ADM09895.1| blue light photoreceptor cryptochrome [Parvularcula bermudensis
HTCC2503]
Length = 478
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 95/177 (53%), Gaps = 3/177 (1%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPP-VSLLGQIYWREFYYVVGSDTPNFD 155
T+ LSP+L FG +S + +H + + G K S L +I WREF Y + P
Sbjct: 238 TSRLSPHLHFGEISPVVLWHSVSDAMEAGDIPKDQGTSFLSEIAWREFSYQLLYYHPTMR 297
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
+ +WDT++K L AW G+TGYP +DA MRQL EGW+H+ R V FL +
Sbjct: 298 DQPLMEKFTDFEWDTDKKALNAWQRGRTGYPIVDAGMRQLWTEGWMHNRVRMIVGSFLVK 357
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSA-SAFFHQFFRVYSPVAFGKKTD 271
DL L W +G F + L+DAD A N +W W++ A FFR+++P +K D
Sbjct: 358 -DLLLDWRDGMRWFWDCLVDADPANNTASWQWIAGCGADAAPFFRIFNPTTQSEKFD 413
>gi|228921829|ref|ZP_04085144.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228837834|gb|EEM83160.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 476
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 99/179 (55%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG + V+L YH L K +S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQIPVKLMYHYLINKSTERQCSLFEKQVISFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L +SW+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLISWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|291303346|ref|YP_003514624.1| deoxyribodipyrimidine photo-lyase [Stackebrandtia nassauensis DSM
44728]
gi|290572566|gb|ADD45531.1| Deoxyribodipyrimidine photo-lyase [Stackebrandtia nassauensis DSM
44728]
Length = 436
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 110/212 (51%), Gaps = 19/212 (8%)
Query: 61 GGETEALKRLEKSLANKEWV-RKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
GGET L+R + W+ R+ + P + TT LS YL+FGC+S
Sbjct: 231 GGETAGLRRWDS------WIDREPDYPAIHDDLAADDTTRLSGYLRFGCVS--------P 276
Query: 120 KILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
++A P + P +L+ Q+ WR+FY+ V P + + W +E L AW
Sbjct: 277 LVVAADP--RTPEALVRQLCWRDFYHQVLHGFPRL-ATDNYRPGARDAWVDDEPALRAWQ 333
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
G+TG P +DA MRQLR +GW+H+ AR A +LT+ DL + W G + F+ L+DAD A
Sbjct: 334 DGETGVPLVDAGMRQLRTQGWMHNRARMVAASYLTK-DLGIDWRHGAAWFDRWLVDADVA 392
Query: 240 MNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
N GNW W + + + +R ++P ++ D
Sbjct: 393 NNYGNWQWTAGTGNDSRPYRRFNPARQAQRYD 424
>gi|428770667|ref|YP_007162457.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium aponinum
PCC 10605]
gi|428684946|gb|AFZ54413.1| deoxyribodipyrimidine photo-lyase type I [Cyanobacterium aponinum
PCC 10605]
Length = 473
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/273 (30%), Positives = 132/273 (48%), Gaps = 25/273 (9%)
Query: 11 ESLPKPKPADDAPTSLPRECQGILHPDEHLV--------PTMKEMGLD-ESSIPLCKFPG 61
E+ PK P D P++ G+ ++ +V P++ ++G ++ +PL
Sbjct: 155 EAQPKSSPVDS-----PQQLTGLNDLEKTIVKELGTINIPSLNDLGFPWDADLPLSP--- 206
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GE AL+RLE + + +E P T+ LS LKFG +SVR + + +
Sbjct: 207 GEESALERLEYFC--QSLIYNYECDRNYP--FLDGTSQLSAALKFGAISVRTIWKKSQAE 262
Query: 122 LATGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
L + +++ +I WREFY P + + Q W+ +EK +AW
Sbjct: 263 LTNCNSDEARENIIAWQKEIAWREFYQHCLYFFPQLAEGAYREQFKQFPWENDEKKFQAW 322
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
GKTGYP +DA MRQL GW+H+ R VA FLT+ DL + W G+ F + L D D
Sbjct: 323 CEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTK-DLIIDWRWGEKYFMQKLYDGDL 381
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
A N G W W ++S + R+++P + +K D
Sbjct: 382 AANNGGWQWSASSGMDPKPLRIFNPASQAQKFD 414
>gi|441519651|ref|ZP_21001324.1| deoxyribodipyrimidine photo-lyase [Gordonia sihwensis NBRC 108236]
gi|441460909|dbj|GAC59285.1| deoxyribodipyrimidine photo-lyase [Gordonia sihwensis NBRC 108236]
Length = 465
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 112/217 (51%), Gaps = 13/217 (5%)
Query: 60 PGGETEALKRLEKSLANKE-WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
P GE AL+R + + E + ++ P+ +TT LSPYLKFGC R H+L
Sbjct: 192 PAGEAAALRRWRRFRQDAERGLDRYSDDRDRPDL--DATTRLSPYLKFGCAHPRTLLHDL 249
Query: 119 KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN---EKYL 175
+ G V+L ++ WR+FY V P+ + + +++ + +
Sbjct: 250 RGRGDAGA-----VALRSELAWRDFYADVLHRRPDTARANYHAAFDALEYHSGPDADAAF 304
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
+AW G+TGYP +DA MRQL EGW+H+ R VA FLT+ DL+L W G F + L+D
Sbjct: 305 DAWCAGRTGYPIVDAGMRQLLAEGWMHNRVRMIVASFLTK-DLHLPWWRGARHFMKHLVD 363
Query: 236 ADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D A N W W + FFR+++PV+ G++ D
Sbjct: 364 GDLASNQHGWQWTAGCGTDAAPFFRIFNPVSQGERFD 400
>gi|114570041|ref|YP_756721.1| deoxyribodipyrimidine photo-lyase type I [Maricaulis maris MCS10]
gi|114340503|gb|ABI65783.1| deoxyribodipyrimidine photo-lyase type I [Maricaulis maris MCS10]
Length = 499
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 133/264 (50%), Gaps = 18/264 (6%)
Query: 14 PKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKS 73
P+P A AP LP + D +++ D +S + GE AL RLE
Sbjct: 165 PEPSAALPAPDRLP--GAAVTASDNLEDWSLRPQAPDWASGFSQDWEPGEDGALNRLEAF 222
Query: 74 LANK--EWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPP 131
LAN+ ++ + ++P+ E T+ LSP+L +G +S R +H ++ G +
Sbjct: 223 LANELADYPQSRDRPD------EDGTSRLSPHLAWGEISPRTIWHTVRDHAERGGSFQGG 276
Query: 132 VSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVD---WDTNEKYLEAWSHGKTGYPFI 188
L ++ WR+F + +F ++ Q D W +N L+AW G+TG P +
Sbjct: 277 EKFLSELGWRDFAIYLAH---HFGSLRDENFNRQFDHFPWRSNPAGLDAWKRGQTGIPIV 333
Query: 189 DAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWL 248
DA MRQL GW+H+ R A FL + L + W +G + FE+ L+DAD +NA +W W+
Sbjct: 334 DAGMRQLWTTGWMHNRVRMITASFLIK-HLGVHWRDGMAWFEDTLVDADLNVNAASWQWV 392
Query: 249 SAS-AFFHQFFRVYSPVAFGKKTD 271
+ S A +FR+++PV G++ D
Sbjct: 393 AGSGADAAPYFRIFNPVTQGERFD 416
>gi|423655980|ref|ZP_17631279.1| hypothetical protein IKG_02968 [Bacillus cereus VD200]
gi|401292211|gb|EJR97875.1| hypothetical protein IKG_02968 [Bacillus cereus VD200]
Length = 476
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L +H L K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK WD E+ L W GKTGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|206891163|ref|YP_002248985.1| deoxyribodipyrimidine photo-lyase [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206743101|gb|ACI22158.1| deoxyribodipyrimidine photo-lyase [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 437
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 97/175 (55%), Gaps = 7/175 (4%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSPY++FG +S+R Y A + ++ WREF+Y + + P F
Sbjct: 220 TSKLSPYIRFGLISLRKIYR------VASEAAGQDCQFIKELAWREFWYHIKLNFPQFKN 273
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
++ + ++ W +EK +A+ KTGYP IDA + QL+ E W+H+ AR VA FLT+
Sbjct: 274 LEFQEKRRKIRWQNDEKLYKAFIEAKTGYPLIDAAIIQLKQENWMHNRARMIVASFLTK- 332
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DL + W G+S F E L+D D +N GNW W ++ + R+++P+ KK D
Sbjct: 333 DLMIDWRWGESFFMEHLIDYDEVVNVGNWQWNASVGPDPKPLRIFNPIIQAKKFD 387
>gi|350532818|ref|ZP_08911759.1| deoxyribodipyrimidine photolyase [Vibrio rotiferianus DAT722]
Length = 471
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 112/212 (52%), Gaps = 13/212 (6%)
Query: 65 EALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILAT 124
E L RL + + K E+ A + T+ LSPYL G LS R + ++ A
Sbjct: 210 EILNRLREFARERSDAYKAERDRPAADG----TSQLSPYLAIGALSSR---QCIARLYAE 262
Query: 125 GPHAK---PPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYLEAWSH 180
PH++ + L +I WREFY + P K KG +++W +E E W
Sbjct: 263 SPHSELTEGKATWLSEIIWREFYQHLLVFEPKLVKGKGFIPWEDKIEWSYDETAFERWKT 322
Query: 181 GKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAM 240
G TGYP +DA MRQL GW+H+ R VA FLT+ DL++ W G++ F L+D D+A
Sbjct: 323 GTTGYPIVDAAMRQLNETGWMHNRLRMIVASFLTK-DLHIDWRWGEAYFMSKLVDGDFAA 381
Query: 241 NAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
N G W W +++ Q +FR+++P++ G+K D
Sbjct: 382 NNGGWQWSASTGCDGQPYFRIFNPISQGEKFD 413
>gi|229522729|ref|ZP_04412145.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TM 11079-80]
gi|229340714|gb|EEO05720.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TM 11079-80]
Length = 469
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 99/177 (55%), Gaps = 3/177 (1%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSPYL G LS R L + G ++ L ++ WREFY + + PN K
Sbjct: 236 TSSLSPYLAIGVLSARQCVARLYHESSMGEPSEGAQVWLSELIWREFYQHLVAIEPNLSK 295
Query: 157 -MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
+ + +++W + + + W GKTGYP +DA MRQL GW+H+ R VA FLT+
Sbjct: 296 SLDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL++ W G+ F L+D D+A N G W W +++ Q +FR+++PV+ G+K D
Sbjct: 356 -DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411
>gi|343503903|ref|ZP_08741705.1| deoxyribodipyrimidine photolyase [Vibrio ichthyoenteri ATCC 700023]
gi|342813488|gb|EGU48457.1| deoxyribodipyrimidine photolyase [Vibrio ichthyoenteri ATCC 700023]
Length = 471
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 101/181 (55%), Gaps = 10/181 (5%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSL-LGQIYWREFYYVVGSDTPNF 154
+T+ LSPYL G LSVR + + AT H + + ++ WR+FY + P
Sbjct: 236 ATSQLSPYLAIGALSVRQCIARV--LFATNVHLDAGREMWISELVWRDFYQHLLHFEPKL 293
Query: 155 DKMKGNKICC---QVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVAC 211
KG +V W ++K+L AW G+TGYP +DA MRQL GW+H+ R VA
Sbjct: 294 --CKGRNFVAWTEKVHWSGDKKHLVAWQKGETGYPIVDAAMRQLNKTGWMHNRLRMVVAS 351
Query: 212 FLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKT 270
FLT+ DL+L W G+ F + L+D D+A N G W W +++ Q +FR+++P A G++
Sbjct: 352 FLTK-DLHLHWRHGEEYFMQKLVDGDYAANNGGWQWSASTGCDGQPYFRIFNPTAQGERF 410
Query: 271 D 271
D
Sbjct: 411 D 411
>gi|423649036|ref|ZP_17624606.1| hypothetical protein IKA_02823 [Bacillus cereus VD169]
gi|401284534|gb|EJR90400.1| hypothetical protein IKA_02823 [Bacillus cereus VD169]
Length = 476
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L +H L K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK WD E+ L W GKTGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|229145749|ref|ZP_04274130.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24]
gi|296503680|ref|YP_003665380.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171]
gi|228637730|gb|EEK94179.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24]
gi|296324732|gb|ADH07660.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171]
Length = 476
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L +H L K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK WD E+ L W GKTGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|30021247|ref|NP_832878.1| deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579]
gi|229130975|ref|ZP_04259903.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4]
gi|29896801|gb|AAP10079.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579]
gi|228652473|gb|EEL08383.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4]
Length = 476
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L +H L K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK WD E+ L W GKTGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|448409751|ref|ZP_21574878.1| deoxyribodipyrimidine photolyase [Halosimplex carlsbadense 2-9-1]
gi|445672522|gb|ELZ25094.1| deoxyribodipyrimidine photolyase [Halosimplex carlsbadense 2-9-1]
Length = 473
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 126/255 (49%), Gaps = 12/255 (4%)
Query: 21 DAPTSLPRECQ-GILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEW 79
+AP P L DE L PT+ ++G DE P P T+ + L + +
Sbjct: 163 EAPAPAPEASDLADLTGDESL-PTLVDLGFDE---PEADVPPASTDVARDLLDAFCEGDV 218
Query: 80 VRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK--KILATGPHAKPPVSLLGQ 137
++ + + T+ LS +LKFG + +R + ++ K A G Q
Sbjct: 219 YDYDDRRDYPADEC---TSRLSAHLKFGTIGIREVHEAVREAKSAAAGADYDSAEEFESQ 275
Query: 138 IYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRL 197
+ WREFY V + P+ ++W+ + + L+AW G+TGYP +DA MRQLR
Sbjct: 276 LAWREFYGHVLWNEPSVVTQNFKSYERPIEWNHDPEALQAWKDGETGYPVVDAGMRQLRR 335
Query: 198 EGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ- 256
E ++H+ R VA FLT+ DL + W EG F E L+D D A + G W W +++ Q
Sbjct: 336 EAYMHNRVRMIVASFLTK-DLLIDWREGYDWFREKLVDHDTANDNGGWQWAASTGTDAQP 394
Query: 257 FFRVYSPVAFGKKTD 271
+FRV++P+ G++ D
Sbjct: 395 YFRVFNPMTQGERYD 409
>gi|423641840|ref|ZP_17617458.1| hypothetical protein IK9_01785 [Bacillus cereus VD166]
gi|401277790|gb|EJR83729.1| hypothetical protein IK9_01785 [Bacillus cereus VD166]
Length = 476
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L +H L K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK WD E+ L W GKTGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|253687618|ref|YP_003016808.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251754196|gb|ACT12272.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 497
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 120/255 (47%), Gaps = 14/255 (5%)
Query: 26 LPRECQGILHPDEHLVPTMKEMGLDESSIPLCK-----FPGGETEALKRLEKSLANKEWV 80
L E + PD P M L S P + FP GE AL++L + +E V
Sbjct: 173 LEAETTCVPAPDARGEPIHNMMALAPFSYPQREVDSDDFPCGERAALQQLRRFC--REQV 230
Query: 81 RKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKP--PVSLLGQI 138
+ +++ P P T+ LSPYL G +S R ++ L+ + + ++
Sbjct: 231 QDYDRQRDVPAL--PGTSKLSPYLALGIVSPRQCFNRLRAECPDMLERREGGAFTWFNEL 288
Query: 139 YWREFYYVVGSDTPNFDKMKGNKICCQ-VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRL 197
WREFY + P K + Q V W + + L AW GKTGYP +DA MRQL
Sbjct: 289 VWREFYRHLIVSWPQLCKHRPFTAWTQWVKWRESSEDLTAWQQGKTGYPIVDAAMRQLNG 348
Query: 198 EGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQ 256
GW+H+ R A FL + DL + W EG+ F LLD D A N G W W +++
Sbjct: 349 TGWMHNRLRMICASFLVK-DLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAP 407
Query: 257 FFRVYSPVAFGKKTD 271
+FR+++P G++ D
Sbjct: 408 YFRIFNPTTQGERFD 422
>gi|228959394|ref|ZP_04121085.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|423628269|ref|ZP_17604018.1| hypothetical protein IK5_01121 [Bacillus cereus VD154]
gi|228800294|gb|EEM47220.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|401270133|gb|EJR76158.1| hypothetical protein IK5_01121 [Bacillus cereus VD154]
Length = 476
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L +H L K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK WD E+ L W GKTGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|448336574|ref|ZP_21525671.1| deoxyribodipyrimidine photolyase [Natrinema pallidum DSM 3751]
gi|445628896|gb|ELY82195.1| deoxyribodipyrimidine photolyase [Natrinema pallidum DSM 3751]
Length = 469
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 113/235 (48%), Gaps = 11/235 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+PT+ ++G+DE P P T A + + +E E T+ L
Sbjct: 176 IPTLADLGVDE---PEATPPTVTTAAARERVADFCSGP---IYEYAAMRDYPAESGTSRL 229
Query: 101 SPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLL---GQIYWREFYYVVGSDTPNFDKM 157
SP+LK+G + R Y ++ S+ Q+ WREFY V + PN
Sbjct: 230 SPHLKWGTIGPRELYAATERAADRAERDADRESVREFQRQLAWREFYAHVLAFNPNTVTE 289
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ ++DW + LEAW G TGYP +DA MRQLR +GW+H+ R VA FLT+ D
Sbjct: 290 NFSGYENEIDWRDDPDALEAWKAGTTGYPIVDAGMRQLRADGWMHNRVRMLVASFLTK-D 348
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L W G + F E L D D A + G W W ++ Q +FRV++P+ G++ D
Sbjct: 349 LLTDWRAGYAWFREKLADHDTANDVGGWQWAGSTGTDAQPYFRVFNPMKQGREYD 403
>gi|423398956|ref|ZP_17376156.1| hypothetical protein ICU_04649 [Bacillus cereus BAG2X1-1]
gi|423410080|ref|ZP_17387228.1| hypothetical protein ICY_04764 [Bacillus cereus BAG2X1-3]
gi|401645588|gb|EJS63241.1| hypothetical protein ICU_04649 [Bacillus cereus BAG2X1-1]
gi|401650994|gb|EJS68562.1| hypothetical protein ICY_04764 [Bacillus cereus BAG2X1-3]
Length = 476
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L +H L K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK WD E+ L W GKTGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|440229885|ref|YP_007343678.1| deoxyribodipyrimidine photolyase [Serratia marcescens FGI94]
gi|440051590|gb|AGB81493.1| deoxyribodipyrimidine photolyase [Serratia marcescens FGI94]
Length = 476
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 132/274 (48%), Gaps = 27/274 (9%)
Query: 4 QKLVSV-LESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGG 62
Q+L+SV + SLP P + P + +PD FP G
Sbjct: 161 QRLLSVDVHSLPAPSVRAGGAIAEPAAPEPFAYPDAEWD---------------AAFPPG 205
Query: 63 ETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI- 121
E AL+RL +E V + + P +L+ +T+ LSPYL G LS R ++ L+
Sbjct: 206 EEHALRRLRAFC--REQVEDYRQQRDFP-ALD-ATSGLSPYLALGVLSPRQCFNRLRLTC 261
Query: 122 --LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYLEAW 178
L T P + + L ++ WREFY + P + + V W+ + + L+AW
Sbjct: 262 PDLLTQPESGA-FTWLNELIWREFYRHLLVAHPALCRHRPFIGWTDAVRWNPDAEALQAW 320
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
G+TGYP +DA MRQL GW+H+ R VA FL + DL + W G+ F LLD D+
Sbjct: 321 QQGRTGYPIVDAAMRQLNHTGWMHNRLRMIVASFLVK-DLLIDWRAGERYFMRQLLDGDF 379
Query: 239 AMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
A N G W W +++ +FR+++P G++ D
Sbjct: 380 AANNGGWQWAASTGTDAAPYFRIFNPTTQGERFD 413
>gi|300715863|ref|YP_003740666.1| deoxyribodipyrimidine photo-lyase [Erwinia billingiae Eb661]
gi|299061699|emb|CAX58815.1| Deoxyribodipyrimidine photo-lyase [Erwinia billingiae Eb661]
Length = 475
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 120/267 (44%), Gaps = 27/267 (10%)
Query: 11 ESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRL 70
E +P PKP AP S E + +P E + F GE AL +L
Sbjct: 170 ECVPAPKPRQGAPLSKTPEIKPFDYPTEAFDSEL--------------FAAGEKAALHQL 215
Query: 71 EKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKP 130
E P+T T+ LS YL G LS R H ++LA P
Sbjct: 216 RHFCQQP----VTEYPDTRNIPAVDGTSRLSVYLATGVLSPRQCLH---RLLAEHPRGLD 268
Query: 131 PVSL---LGQIYWREFYYVVGSDTPNFDKMKGNKI-CCQVDWDTNEKYLEAWSHGKTGYP 186
++ L ++ WREFY + P + K V W +K LEAW GKTGYP
Sbjct: 269 DSNVFVWLNELIWREFYRHLLVAWPKLCRYKPFIAWTDNVKWQPADKQLEAWQQGKTGYP 328
Query: 187 FIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWM 246
+DA MRQ+ GW+H+ R VA FL + DL + W EG+ F L+D D A N G W
Sbjct: 329 IVDAAMRQMNQLGWMHNRLRMIVASFLVK-DLLIDWREGERYFMSQLIDGDLAANNGGWQ 387
Query: 247 WLSASAF-FHQFFRVYSPVAFGKKTDK 272
W ++S +FR+++P G++ DK
Sbjct: 388 WAASSGNDAAPYFRIFNPTTQGERFDK 414
>gi|229075148|ref|ZP_04208142.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18]
gi|228707925|gb|EEL60104.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18]
Length = 476
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L +H L K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK WD E+ L W GKTGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|448345411|ref|ZP_21534308.1| deoxyribodipyrimidine photolyase [Natrinema altunense JCM 12890]
gi|445635409|gb|ELY88579.1| deoxyribodipyrimidine photolyase [Natrinema altunense JCM 12890]
Length = 469
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 112/235 (47%), Gaps = 11/235 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+PT+ ++G DE P P T A + + +E E T+ L
Sbjct: 176 IPTLADLGFDE---PEATPPTVTTAAARERVADFCSGP---IYEYAALRDYPAESGTSRL 229
Query: 101 SPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLL---GQIYWREFYYVVGSDTPNFDKM 157
SP+LK+G + R Y ++ S+ Q+ WREFY V + PN
Sbjct: 230 SPHLKWGTIGPRELYAATERAADRAERDADRESVREFQRQLAWREFYAHVLAFNPNTVTE 289
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ ++DW + LEAW G TGYP IDA MRQLR +GW+H+ R VA FLT+ D
Sbjct: 290 DFSGYDNEIDWRDDPDALEAWKAGTTGYPIIDAGMRQLRADGWMHNRVRMLVASFLTK-D 348
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L W G + F E L D D A + G W W ++ Q +FRV++P+ G++ D
Sbjct: 349 LLTDWRAGYAWFREKLADHDTANDVGGWQWAGSTGTDAQPYFRVFNPMKQGREYD 403
>gi|288958781|ref|YP_003449122.1| deoxyribodipyrimidine photo-lyase [Azospirillum sp. B510]
gi|288911089|dbj|BAI72578.1| deoxyribodipyrimidine photo-lyase [Azospirillum sp. B510]
Length = 504
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 106/212 (50%), Gaps = 7/212 (3%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GET AL L L V E+ + T+ LSP+L FG + R +H +
Sbjct: 226 GETAALSHLADFLDGPVGVYATERDRPDRHG----TSTLSPHLAFGEIGPRQVWHAARHA 281
Query: 122 LATGPHAKPPVSL-LGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSH 180
P + L ++ WREF Y + P + + W + L+AW
Sbjct: 282 AEARPELAAGIDFFLREVGWREFQYHLLHHAPELPERPLDPRFADFPWREDAAGLQAWRR 341
Query: 181 GKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAM 240
G+TGYP +DA MRQL GW+H+ R VA FL + DL L W+EG+ F + L+DAD A
Sbjct: 342 GRTGYPIVDAGMRQLWETGWMHNRVRMIVASFLVK-DLLLPWQEGERWFWDTLVDADLAQ 400
Query: 241 NAGNWMWLSA-SAFFHQFFRVYSPVAFGKKTD 271
NAGNW W++ A FFRV++PV G+K D
Sbjct: 401 NAGNWQWVAGCGADAAPFFRVFNPVLQGEKFD 432
>gi|282889865|ref|ZP_06298404.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175848|ref|YP_004652658.1| hypothetical protein PUV_18540 [Parachlamydia acanthamoebae UV-7]
gi|281500439|gb|EFB42719.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480206|emb|CCB86804.1| putative uncharacterized protein [Parachlamydia acanthamoebae UV-7]
Length = 474
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 99/178 (55%), Gaps = 6/178 (3%)
Query: 95 PSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
P + LSPYL FG +SVR+ + E+ K L A+P L Q+ WR+F Y + P
Sbjct: 234 PGVSRLSPYLHFGEISVRMVWDEIVKKLGFQ-EAEP---YLRQLGWRDFAYHLLYHFPKT 289
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
+ + W N+K L+ W G TGYPF+DA MRQL + GW+H+ AR V FL
Sbjct: 290 PEEPLRQEFAYFPWKENKKLLKVWQKGMTGYPFVDAGMRQLWMTGWMHNRARMVVGSFLV 349
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
+ DL L W+ G F + L+DAD A N W W++ S A +FR+++P+ G+K D
Sbjct: 350 K-DLLLPWQTGAQWFWDTLVDADLANNTLGWQWVAGSGADAAPYFRIFNPITQGEKFD 406
>gi|443475122|ref|ZP_21065081.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
gi|443020045|gb|ELS34048.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
Length = 489
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 136/272 (50%), Gaps = 28/272 (10%)
Query: 11 ESLPKPKPADDAPTSLPRECQGILHPDEHL----VPTMKEMG-LDESSIPLCKFPGGETE 65
+S PKP+P D P++ G L E+L +P+++E+ +++ ++P GE+
Sbjct: 175 QSKPKPQPLD-----APQKLTG-LASYENLPVIPLPSLRELKFINDITLP----ESGESA 224
Query: 66 ALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATG 125
AL LE + + + +++ P T+ LSP+L+FG + +R + +K +A
Sbjct: 225 ALALLE-AFCDGNGILRYQTERDFP--AHAGTSTLSPHLRFGTVGIRRVW---EKAIAAQ 278
Query: 126 PHAKPPVSLLG------QIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
+ L G ++ WREFY V P WD + + EAW
Sbjct: 279 QLVRSDEDLAGITIWQQELAWREFYQHVLFHFPALATGAYRPQMQSFPWDDDPEKFEAWC 338
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
G TGYP +DA MRQL GW+H+ R VA FLT+ DL ++W+ G+ F + LLD D A
Sbjct: 339 AGLTGYPIVDAAMRQLNQTGWMHNRCRMIVASFLTK-DLIINWQLGERYFMQKLLDGDLA 397
Query: 240 MNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
N G W W ++S + R+++P + +K D
Sbjct: 398 ANNGGWQWSASSGMDPKPLRIFNPASQARKYD 429
>gi|428218359|ref|YP_007102824.1| deoxyribodipyrimidine photo-lyase [Pseudanabaena sp. PCC 7367]
gi|427990141|gb|AFY70396.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena sp. PCC 7367]
Length = 489
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 97/184 (52%), Gaps = 10/184 (5%)
Query: 95 PSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG------QIYWREFYYVVG 148
P T++LSP+L+FG + +R + + +A H + G ++ WREFY V
Sbjct: 250 PGTSMLSPHLRFGTIGIRQVW---QATVAATEHIRSDEEKAGLQTWRQELAWREFYQHVL 306
Query: 149 SDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHA 208
P+ +WD +E AW G+TGYP +DA MRQL GW+H+ R
Sbjct: 307 FHFPDLATGAYRSQMQVFEWDDDEAKFAAWCKGETGYPIVDAAMRQLNQTGWMHNRCRMI 366
Query: 209 VACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGK 268
VA FLT+ DL ++W+ G+ F E L+D D A N G W W ++S + R+++P + +
Sbjct: 367 VASFLTK-DLIINWQWGERYFMEKLVDGDQAANNGGWQWSASSGMDPKPLRIFNPASQAR 425
Query: 269 KTDK 272
K DK
Sbjct: 426 KYDK 429
>gi|47564301|ref|ZP_00235346.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241]
gi|47558453|gb|EAL16776.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241]
Length = 476
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 99/179 (55%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L +H L + K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQSSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK WD E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKNFEHFPWDKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|238756042|ref|ZP_04617366.1| Deoxyribodipyrimidine photo-lyase [Yersinia ruckeri ATCC 29473]
gi|238705767|gb|EEP98160.1| Deoxyribodipyrimidine photo-lyase [Yersinia ruckeri ATCC 29473]
Length = 479
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 11/224 (4%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FP GE AL+RL + +E VR + + P T+ LSPYL G LS R ++ L
Sbjct: 202 FPAGEEAALQRLRQFC--REPVRDYHQQRDLPAI--AGTSQLSPYLAIGQLSPRQCFNRL 257
Query: 119 K---KILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKY 174
+ + P + S L ++ WREFY + P + + +V W+T+ +
Sbjct: 258 RVECPDMLEQPDSGA-FSWLNELIWREFYRHLLVAYPRLCQHRPFIGWTDEVRWNTDAER 316
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
L+AW G TGYP +DA MRQ+ GW+H+ R A FL + DL + W +G+ F LL
Sbjct: 317 LQAWQQGMTGYPIVDAAMRQMNATGWMHNRLRMITASFLVK-DLLVDWRQGERYFMSKLL 375
Query: 235 DADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDKFELLL 277
D D A N G W W +++ +FR+++P G++ DK + +
Sbjct: 376 DGDLAANNGGWQWAASTGTDSAPYFRIFNPTTQGERFDKHGVFI 419
>gi|420691989|ref|ZP_15175191.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-52]
gi|391568598|gb|EIS16299.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-52]
Length = 467
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 123/269 (45%), Gaps = 43/269 (15%)
Query: 31 QGILHPDEHLVPTMKE------------MGLDESSIPLCKFPGGETEALKRLEKSLANKE 78
Q +L D H VP K + S+ FP GE AL+RL + +E
Sbjct: 162 QRLLMSDNHCVPAPKARHAPPVLLSPLPFDYPQQSVDSQLFPAGEDAALQRLRRFC--RE 219
Query: 79 WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL----KKILATGPHAKPPVSL 134
V+ + + P P T+ LSPYL G LS R ++ L ++L +
Sbjct: 220 QVQDYRQYRDLPAV--PGTSCLSPYLVLGVLSPRQCFNRLWAESPEMLENADSGA--FTW 275
Query: 135 LGQIYWREFYYVVGSDTPNFDKMKGNKICCQ----------VDWDTNEKYLEAWSHGKTG 184
L ++ WREFY + P CQ V W+ +E L+AW G+TG
Sbjct: 276 LNELIWREFYRHLLVAYPRL---------CQHHPFIGWADGVVWNRSESQLKAWQQGQTG 326
Query: 185 YPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGN 244
YP +DA MRQ+ GW+H+ R A FL + DL + W +G+ F L+D D A N G
Sbjct: 327 YPIVDAAMRQMNETGWMHNRLRMISASFLVK-DLLIDWRQGERYFMSQLVDGDLAANNGG 385
Query: 245 WMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
W W +++ +FR+++P G++ DK
Sbjct: 386 WQWAASTGTDAAPYFRIFNPTTQGERFDK 414
>gi|326384210|ref|ZP_08205892.1| deoxyribodipyrimidine photo-lyase [Gordonia neofelifaecis NRRL
B-59395]
gi|326197075|gb|EGD54267.1| deoxyribodipyrimidine photo-lyase [Gordonia neofelifaecis NRRL
B-59395]
Length = 480
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 118/234 (50%), Gaps = 19/234 (8%)
Query: 44 MKEMGLDESSIPLCKFPGGETEALKRLE--KSLANKEWVRKFEKPNTAPNSLEPSTTVLS 101
+ E D +++P+ GE AL+R + E R + N L+ +T+ LS
Sbjct: 192 LTEEASDAAALPVA----GEKAALERWRAFRDGGTSELDRYADDRNRP--DLD-ATSRLS 244
Query: 102 PYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNK 161
PYLKFGCL R H+L+ G +L ++ WR+FY V P + +
Sbjct: 245 PYLKFGCLHPRTILHDLRARTDDGA-----TTLRSELAWRDFYADVLFHRPETARTGVDA 299
Query: 162 ICCQVDWDTN---EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
Q+++D+ + +AW G+TGYP +DA MRQL EGW+H+ R VA FLT+ DL
Sbjct: 300 KFDQMEYDSGPDADAAFDAWCRGRTGYPIVDAGMRQLLAEGWMHNRVRMIVASFLTK-DL 358
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
+L W G F L+D D A N W W + +FRV++PV+ G++ D
Sbjct: 359 HLPWWRGARYFMTHLVDGDLASNQHGWQWTAGCGTDAAPYFRVFNPVSQGERFD 412
>gi|423465178|ref|ZP_17441946.1| hypothetical protein IEK_02365 [Bacillus cereus BAG6O-1]
gi|402418939|gb|EJV51227.1| hypothetical protein IEK_02365 [Bacillus cereus BAG6O-1]
Length = 476
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SVRL YH L K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVRLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|229097643|ref|ZP_04228601.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29]
gi|229116646|ref|ZP_04246032.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3]
gi|423379068|ref|ZP_17356352.1| hypothetical protein IC9_02421 [Bacillus cereus BAG1O-2]
gi|423442112|ref|ZP_17419018.1| hypothetical protein IEA_02442 [Bacillus cereus BAG4X2-1]
gi|423534525|ref|ZP_17510943.1| hypothetical protein IGI_02357 [Bacillus cereus HuB2-9]
gi|423540200|ref|ZP_17516591.1| hypothetical protein IGK_02292 [Bacillus cereus HuB4-10]
gi|423546432|ref|ZP_17522790.1| hypothetical protein IGO_02867 [Bacillus cereus HuB5-5]
gi|423623773|ref|ZP_17599551.1| hypothetical protein IK3_02371 [Bacillus cereus VD148]
gi|228666818|gb|EEL22274.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3]
gi|228685782|gb|EEL39702.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29]
gi|401173735|gb|EJQ80947.1| hypothetical protein IGK_02292 [Bacillus cereus HuB4-10]
gi|401181001|gb|EJQ88155.1| hypothetical protein IGO_02867 [Bacillus cereus HuB5-5]
gi|401257696|gb|EJR63893.1| hypothetical protein IK3_02371 [Bacillus cereus VD148]
gi|401633514|gb|EJS51291.1| hypothetical protein IC9_02421 [Bacillus cereus BAG1O-2]
gi|402416068|gb|EJV48387.1| hypothetical protein IEA_02442 [Bacillus cereus BAG4X2-1]
gi|402462942|gb|EJV94645.1| hypothetical protein IGI_02357 [Bacillus cereus HuB2-9]
Length = 476
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SVRL YH L K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVRLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|309791051|ref|ZP_07685587.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG-6]
gi|308226906|gb|EFO80598.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG6]
Length = 459
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/257 (31%), Positives = 126/257 (49%), Gaps = 25/257 (9%)
Query: 19 ADDAPTSLP--RECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLAN 76
AD P + P + C+ + P H +P + L +P P GE A L++
Sbjct: 161 ADLRPVAAPILQPCRDL--PVSHAIPDL----LAPHPLP----PAGELAAQTILDEF--T 208
Query: 77 KEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSL-L 135
+ +R + P P T+ LSPYL+FG ++VR + + H P +
Sbjct: 209 RTSLRTYATQRDLPAV--PGTSRLSPYLRFGMIAVR------QCLAVAQAHPGPGADTWI 260
Query: 136 GQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQL 195
++ WR+FY V P+ + + W+ + AW G TGYP +DA MRQL
Sbjct: 261 AELAWRDFYIQVLFHHPHVLRGAFKPQYDDLAWENDPDLFAAWCAGHTGYPMVDAAMRQL 320
Query: 196 RLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH 255
+ EGW+H+ AR VA FLT+ DL + W G+ F ++LLD D A N G W W +++
Sbjct: 321 QQEGWMHNRARMIVASFLTK-DLLIDWRWGERYFMQMLLDGDPAANNGGWQWAASTGTDA 379
Query: 256 Q-FFRVYSPVAFGKKTD 271
Q +FR+++P G+K D
Sbjct: 380 QPYFRIFNPTCQGQKFD 396
>gi|448310167|ref|ZP_21500013.1| deoxyribodipyrimidine photolyase [Natronolimnobius innermongolicus
JCM 12255]
gi|445608328|gb|ELY62179.1| deoxyribodipyrimidine photolyase [Natronolimnobius innermongolicus
JCM 12255]
Length = 468
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 126/255 (49%), Gaps = 14/255 (5%)
Query: 22 APTSLPRECQGILHPDEHLVPTMKEMGLDE-SSIPLCKFPGGETEALKRLEKSLANKEWV 80
AP P E + P+ +P+ +G DE S P P T A +RLE S + +
Sbjct: 158 APVDGPTE-DDLADPNGEPIPSPSALGFDEPESTPPTVTP---TAARRRLE-SFCDAN-I 211
Query: 81 RKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK---KILATGPHAKPPVSLLGQ 137
++ P++ +T+ LS +LK+G + VR Y + + K + Q
Sbjct: 212 YRYADERDVPSA--GATSRLSIHLKWGTVGVRTVYDATDAAAERASDDDDRKSVAAFQRQ 269
Query: 138 IYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRL 197
+ WREFY V + P + ++ W + L AW G+TG+P +DA MRQLR
Sbjct: 270 LAWREFYVHVLAFNPETVTENFSGYENEIPWRNDPDELAAWKAGETGFPIVDAGMRQLRR 329
Query: 198 EGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ- 256
EGWIH+ R VA FLT+ DL + W +G + F LL D D A + G W W +++ Q
Sbjct: 330 EGWIHNRVRMLVAAFLTK-DLLIDWRKGYAHFRRLLADHDTASDVGGWQWAASTGTDAQP 388
Query: 257 FFRVYSPVAFGKKTD 271
+FRV++P G++ D
Sbjct: 389 YFRVFNPSKQGREYD 403
>gi|421082068|ref|ZP_15542962.1| Putative deoxyribodipyrimidine photolyase [Pectobacterium wasabiae
CFBP 3304]
gi|401703103|gb|EJS93332.1| Putative deoxyribodipyrimidine photolyase [Pectobacterium wasabiae
CFBP 3304]
Length = 488
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 119/245 (48%), Gaps = 14/245 (5%)
Query: 36 PDEHLVPTMKEMGLDESSIPLCK-----FPGGETEALKRLEKSLANKEWVRKFEKPNTAP 90
PD P ++ L S P + FP GE AL++L + +E V+ +++ P
Sbjct: 174 PDVRGEPIKDKVALSPFSYPQVEVNSDDFPCGERVALQQLRRFC--REQVQDYDRQRDFP 231
Query: 91 NSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKP--PVSLLGQIYWREFYYVVG 148
+P T+ LSPYL G +S R ++ L+ + + ++ WREFY +
Sbjct: 232 --AQPGTSKLSPYLALGIVSPRQCFNRLRTECPEMLERREGGAFTWFNELVWREFYRHLI 289
Query: 149 SDTPNFDKMKGNKICCQ-VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARH 207
P K + Q V W + + L AW GKTGYP +DA MRQL GW+H+ R
Sbjct: 290 VSWPQLCKHRPFTAWTQWVKWRESPEDLAAWQQGKTGYPIVDAAMRQLNETGWMHNRLRM 349
Query: 208 AVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAF 266
A FL + DL + W EG+ F LLD D A N G W W +++ +FR+++P
Sbjct: 350 ICASFLVK-DLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 408
Query: 267 GKKTD 271
G++ D
Sbjct: 409 GERFD 413
>gi|423436667|ref|ZP_17413648.1| hypothetical protein IE9_02848 [Bacillus cereus BAG4X12-1]
gi|401122403|gb|EJQ30190.1| hypothetical protein IE9_02848 [Bacillus cereus BAG4X12-1]
Length = 476
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 113/214 (52%), Gaps = 9/214 (4%)
Query: 63 ETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL---K 119
E A K +K ++K + + + PN + + ++L+PYL FG +SV+L +H L
Sbjct: 201 EEGAYKTFKKFFSSK--LASYSEGRDFPN--QNAHSMLAPYLSFGQISVKLMFHYLINKS 256
Query: 120 KILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
K S + Q+ WREF Y + P NK WD E+ L W
Sbjct: 257 TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVSKPLNKSFENFPWDKEEELLSVWQ 316
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
G+TGYPFIDA MR+L G++H+ AR AVA FL + L + W+EG F + LLDAD A
Sbjct: 317 KGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIA 375
Query: 240 MNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
N W W++ S A +FR+++P+ G+K DK
Sbjct: 376 NNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|379731644|ref|YP_005323840.1| deoxyribodipyrimidine photo-lyase [Saprospira grandis str. Lewin]
gi|378577255|gb|AFC26256.1| deoxyribodipyrimidine photo-lyase [Saprospira grandis str. Lewin]
Length = 445
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 123/253 (48%), Gaps = 27/253 (10%)
Query: 36 PDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP 95
P +P+++ MG S + FP L ++ ++K+E+ P +LE
Sbjct: 189 PGNFEIPSLESMGFAPSQL---NFPS-----------RLLKQKRIKKYEETRNFP-ALEE 233
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
T+ L + +FG +S+R + +K+ AT L ++ WR+FY + ++ P
Sbjct: 234 GTSRLGLHFRFGTISIREKARKARKLNAT---------YLNELIWRDFYAQILANFPKVV 284
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
Q++W NE+ EAW GKTGYP +DA MR+L G++H+ R VA FL +
Sbjct: 285 GQSFRPQYDQIEWRNNEEEFEAWCQGKTGYPLVDAGMRELNATGYMHNRVRMLVASFLCK 344
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDKFE 274
L + W G++ F E LLD D A N G W W + S +FR++SP + KK D E
Sbjct: 345 -HLLIDWRWGEAYFAEKLLDFDLASNNGGWQWAAGSGTDAAPYFRIFSPESQLKKFDA-E 402
Query: 275 LLLDADWAMNAGN 287
L W G+
Sbjct: 403 LKYVKKWVKEYGS 415
>gi|453328412|dbj|GAC89303.1| deoxyribodipyrimidine photolyase [Gluconobacter thailandicus NBRC
3255]
Length = 483
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 95/177 (53%), Gaps = 5/177 (2%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
T+ LSPYL G +S R + ++K G H + L +I WREF P
Sbjct: 247 GTSRLSPYLASGAISPRQVWEAIQK---KGAHDEGARIFLSEIGWREFAKYTLFHQPRLP 303
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
+ + ++ W +E+ L AW G+TG P +DA MRQL GW+H+ AR V FLT+
Sbjct: 304 DVSLGQKFGKMPWRKSEQDLTAWQQGRTGVPVVDAGMRQLWKTGWMHNRARMIVGSFLTK 363
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
L + W +G++ F + L+DADWA NA NW W++ + FFR+++P G K D
Sbjct: 364 -HLLIDWRQGEAWFRDTLVDADWASNAMNWQWVAGTGIDASPFFRIFNPTRQGVKFD 419
>gi|395233419|ref|ZP_10411659.1| deoxyribodipyrimidine photolyase [Enterobacter sp. Ag1]
gi|394732146|gb|EJF31853.1| deoxyribodipyrimidine photolyase [Enterobacter sp. Ag1]
Length = 469
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 103/215 (47%), Gaps = 7/215 (3%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FP GE EA+ L K + P T+ LSPYL G LS R H L
Sbjct: 200 FPVGEPEAIGMLRKFCLQP----ATDYPEQRDFPAIEGTSRLSPYLATGVLSPRQCLHRL 255
Query: 119 KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKI-CCQVDWDTNEKYLEA 177
K + + L ++ WREFY + P + + +V W N +LEA
Sbjct: 256 LKEHPKALEGEAGATWLNELIWREFYRHLMVAYPKLCRHQPFIAWTDKVRWSGNNAWLEA 315
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W GKTGYP +DA MRQL GW+H+ R VA FL + DL + W +G+ F L+D D
Sbjct: 316 WQQGKTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLVK-DLLIDWRQGERYFMSQLIDGD 374
Query: 238 WAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
A N G W W +++ +FR+++P G++ D
Sbjct: 375 LAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFD 409
>gi|429886347|ref|ZP_19367906.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae PS15]
gi|429226676|gb|EKY32756.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae PS15]
Length = 469
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 108/201 (53%), Gaps = 13/201 (6%)
Query: 77 KEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG 136
+E V+ + + P + T+ LSPYL G LS R L + G ++ L
Sbjct: 218 RERVQDYHQTRDFP--AQEGTSSLSPYLAIGVLSARQCVARLYHESSMGEISEGAQVWLS 275
Query: 137 QIYWREFYYVVGSDTPNFDKMK-----GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAI 191
++ WREFY + + PN K + G ++ W+ NEK+ + W GKTGYP +DA
Sbjct: 276 ELIWREFYQHLVAIEPNLSKSRDFVEWGARLEW---WNDNEKF-QLWCEGKTGYPIVDAA 331
Query: 192 MRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS 251
MRQL GW+H+ R VA FL + DL++ W G+ F L+D D+A N G W W +++
Sbjct: 332 MRQLNQTGWMHNRLRMIVASFLIK-DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCAST 390
Query: 252 AFFHQ-FFRVYSPVAFGKKTD 271
Q +FR+++PV+ G+K D
Sbjct: 391 GCDGQPYFRIFNPVSQGEKFD 411
>gi|422701792|ref|ZP_16759632.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1342]
gi|315169765|gb|EFU13782.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1342]
Length = 477
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 10/221 (4%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
+ IPL + GE A +RL + K ++ +E P + T+ LS +L+ G LS+
Sbjct: 189 ARIPLTHYSVGEETARRRLNTFIDQK--LQSYENKRDFP--YQDQTSHLSTFLRTGELSI 244
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R + EL A+ P + + ++ WR+FY ++ S P + + + W +
Sbjct: 245 RTIWQEL----ASAPSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWTND 300
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+ F++
Sbjct: 301 PEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEKYFQK 359
Query: 232 LLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTD 271
+L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 360 MLIDYDVANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 400
>gi|244539057|dbj|BAH83100.1| deoxyribodipyrimidine photolyas [Candidatus Ishikawaella capsulata
Mpkobe]
Length = 477
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 109/217 (50%), Gaps = 9/217 (4%)
Query: 58 KFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHE 117
+FP GE AL LE + K + + P+ ST+ LSPYL G +S R +
Sbjct: 199 EFPLGEESALNLLEIFCSTK--ITSYATQTNLPSLY--STSYLSPYLAVGIISPRQCLNT 254
Query: 118 LKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKI--CCQVDWDTNEKYL 175
L VS Q+ WREFY + P F M I + W+T+E++L
Sbjct: 255 LLNHYPNLLENNIAVSWFNQLIWREFYNHTLAKYP-FLCMGKPYIDWTNNIVWNTDEEHL 313
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
AW +G TGYP IDA MRQL GW+H+ R A FL + DL + W G+ F LLD
Sbjct: 314 IAWQNGYTGYPIIDAGMRQLNSTGWMHNRIRMITASFLVK-DLLIDWRIGEKYFMLHLLD 372
Query: 236 ADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTD 271
+ A+N GNW W+S++ +FR ++P GKK D
Sbjct: 373 GNLALNNGNWQWISSTGNNSWPYFRSFNPTTQGKKID 409
>gi|414342179|ref|YP_006983700.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans H24]
gi|411027514|gb|AFW00769.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans H24]
Length = 502
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 95/177 (53%), Gaps = 5/177 (2%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
T+ LSPYL G +S R + ++K G H + L +I WREF P
Sbjct: 266 GTSRLSPYLASGAISPRQVWEAIQK---KGAHDEGARIFLSEIGWREFAKYTLFHQPRLP 322
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
+ + ++ W +E+ L AW G+TG P +DA MRQL GW+H+ AR V FLT+
Sbjct: 323 DVSLGQKFGKMPWRKSEQDLTAWQQGRTGVPVVDAGMRQLWKTGWMHNRARMIVGSFLTK 382
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
L + W +G++ F + L+DADWA NA NW W++ + FFR+++P G K D
Sbjct: 383 -HLLIDWRQGEAWFRDTLVDADWASNAMNWQWVAGTGIDASPFFRIFNPTRQGVKFD 438
>gi|423528953|ref|ZP_17505398.1| hypothetical protein IGE_02505 [Bacillus cereus HuB1-1]
gi|402449821|gb|EJV81656.1| hypothetical protein IGE_02505 [Bacillus cereus HuB1-1]
Length = 476
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L +H L K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK WD E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VSKPLNKSFENFPWDKEEELLSVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|332662834|ref|YP_004445622.1| DASH family cryptochrome [Haliscomenobacter hydrossis DSM 1100]
gi|332331648|gb|AEE48749.1| cryptochrome, DASH family [Haliscomenobacter hydrossis DSM 1100]
Length = 454
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 122/237 (51%), Gaps = 8/237 (3%)
Query: 41 VPTMKEMGLDESSIP-----LCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP 95
+P+++E+G + + F GGETE +KRL+ L + ++ +++ +
Sbjct: 193 IPSLEELGHNVDDFAKDPRAVLSFKGGETEGIKRLQYYLWETDLIKNYKETRNGLLGGDY 252
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPN-F 154
S+ LSP+L GCLS +L YHELKK A + L ++ WR+F+ +G N
Sbjct: 253 SSK-LSPWLAQGCLSPKLIYHELKKYEAQRGANESTYWLFFELLWRDFFRFMGKKYGNKI 311
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
++ G + W N + L+ W G TG PFIDA M +L+ G++ + R VA FL
Sbjct: 312 FQIGGTRGQADPRWTENPQVLQKWIDGTTGVPFIDANMLELKHTGFMSNRGRQNVASFLV 371
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+ DL ++W+ G FE +L+D D N GNW +++ + R ++ + K+ D
Sbjct: 372 K-DLNINWQMGAEYFESILIDYDVCSNWGNWNYIAGVGSDPREDRYFNTLTQAKRYD 427
>gi|70990122|ref|XP_749910.1| deoxyribodipyrimidine photo-lyase Phr1 [Aspergillus fumigatus
Af293]
gi|66847542|gb|EAL87872.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
fumigatus Af293]
gi|159130392|gb|EDP55505.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
fumigatus A1163]
Length = 586
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 134/278 (48%), Gaps = 15/278 (5%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQG----ILHPDEHLVPTMKEMGLDESSIPLCK 58
Y+ V+ L P + P S P + + + + P K++ +E
Sbjct: 251 YRTWVAYLNENPGCLEVSEEPGSNPGDARKYFKELFESEVPAAPEHKQLSEEEKQHLGHL 310
Query: 59 FPGGETEALKRLEKSLANKEWVRKF-EKPNTAPNSLEPSTTVLSPYLKFGCLSVRL-FYH 116
+P GE EAL+RLE L K R + E+ N +T++LSPY G LS R H
Sbjct: 311 YPAGEHEALRRLEAFLEEK--GRDYAEERNMVSGQ---TTSILSPYFASGLLSARTAIEH 365
Query: 117 ELKKILATGPHAKPP-VSLLGQIYWREFYYVVGSDTPNFDKMKGNK-ICCQVDWDTNEKY 174
+ + H P V +G++ WREFY V P K K ++W+ E
Sbjct: 366 ARRANKGSLQHGDPGLVRWIGEVAWREFYRHVLVHWPFICMNKCFKPEFTNLEWEYEEDR 425
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
AW GKTG+P +DA MRQ + + W+H+ R VA FL++ DL L W G+ F E L+
Sbjct: 426 FTAWREGKTGFPIVDAAMRQAKQDKWMHNRTRMIVASFLSK-DLLLDWRRGERYFMETLI 484
Query: 235 DADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
D D+A N G W + S++ Q +FR+++P+ ++ D
Sbjct: 485 DGDFASNHGGWGFGSSTGVDPQPYFRIFNPLLQSERFD 522
>gi|163800188|ref|ZP_02194089.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
gi|159175631|gb|EDP60425.1| deoxyribodipyrimidine photolyase [Vibrio sp. AND4]
Length = 471
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 103/180 (57%), Gaps = 9/180 (5%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHA---KPPVSLLGQIYWREFYYVVGSDTPN 153
T+ LSPYL G LS R + ++ A PH + + L +I WREFY + P
Sbjct: 238 TSQLSPYLAIGALSPR---QCIARLHAENPHTDLTEGKATWLSEIIWREFYQHLLVFEPK 294
Query: 154 FDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
K +G + +++W +E E WS+G TGYP +DA MRQL GW+H+ R VA F
Sbjct: 295 LVKGQGFIQWEDKIEWSYDEVAFERWSNGTTGYPIVDAAMRQLNQTGWMHNRLRMIVASF 354
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
LT+ DL++ W G++ F L+D D+A N G W W +++ Q +FR+++P++ G+K D
Sbjct: 355 LTK-DLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFD 413
>gi|423384690|ref|ZP_17361946.1| hypothetical protein ICE_02436 [Bacillus cereus BAG1X1-2]
gi|401639360|gb|EJS57099.1| hypothetical protein ICE_02436 [Bacillus cereus BAG1X1-2]
Length = 476
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L +H L K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLVNKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK WD E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VSKPLNKSFENFPWDKEEELLSVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|290892787|ref|ZP_06555778.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J2-071]
gi|404407050|ref|YP_006689765.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2376]
gi|290557599|gb|EFD91122.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J2-071]
gi|404241199|emb|CBY62599.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2376]
Length = 467
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 11/235 (4%)
Query: 38 EHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPST 97
E L P +E E + L GE A RL + K + ++K P T
Sbjct: 171 ESLFPKYEEQ-FAEMTCDLPILDSGERAANTRLANFI--KHDIADYDKARDFPEL--DKT 225
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
+ LS YL+ G +S+R + EL++ AT A + ++ WR+FY ++ PN
Sbjct: 226 SHLSRYLRTGEISIRTIWQELQETEATEGRA----TFEKELCWRDFYNMIYVSFPNQKNE 281
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ ++W+ N ++ +AW GKTG+P +DA MRQL+ GW+H+ R A FLT+ D
Sbjct: 282 PIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK-D 340
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTD 271
L + W G+ F+++L+D D A N G W W +++ +FR+++P +K D
Sbjct: 341 LLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395
>gi|206969086|ref|ZP_03230041.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH1134]
gi|206736127|gb|EDZ53285.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH1134]
Length = 476
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L +H L K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK WD E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VSKPLNKSFENFPWDKEEELLSVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|386052851|ref|YP_005970409.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes Finland
1998]
gi|346645502|gb|AEO38127.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes Finland
1998]
Length = 467
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 17/238 (7%)
Query: 38 EHLVPTMKEMGLDESSIPLCKFP---GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLE 94
E+L P +E + + C FP GE A RL + K + ++K P
Sbjct: 171 ENLFPKYEEQFAEMT----CDFPILDSGEKTANTRLANFI--KHDIADYDKARDFPEL-- 222
Query: 95 PSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
T+ LS YL+ G +S+R + L++ AT A + ++ WR+FY ++ PN
Sbjct: 223 DKTSHLSRYLRTGEISIRTIWQALQETEATEGRA----TFEKELCWRDFYNMIYVSFPNQ 278
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
+ ++W+ N ++ +AW GKTG+P +DA MRQL+ GW+H+ R A FLT
Sbjct: 279 KNEPIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLT 338
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+ DL + W G+ F+++L+D D A N G W W +++ +FR+++P +K D
Sbjct: 339 K-DLLIDWRFGEKYFQQMLIDYDSASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395
>gi|424865450|ref|ZP_18289315.1| deoxyribodipyrimidine photo-lyase [SAR86 cluster bacterium SAR86B]
gi|400758718|gb|EJP72920.1| deoxyribodipyrimidine photo-lyase [SAR86 cluster bacterium SAR86B]
Length = 388
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 115/221 (52%), Gaps = 9/221 (4%)
Query: 56 LCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY 115
L ++ GE A K L+ L NK V+++ + P + T+ +SPYL G LS +
Sbjct: 115 LSQWELGEEGAKKILKNFLKNK--VKRYNEDRNDP--IIEGTSRISPYLALGILSSKRCI 170
Query: 116 HELKKILATGPHA--KPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNE 172
E K+ H+ K + + +I WREFY + P K K + ++W +E
Sbjct: 171 LEALKLNDLDIHSGNKGILKWIDEIVWREFYRNIMHSFPKVSKGKPFQEYTDNINWRYDE 230
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+AW +G+TG+P IDA MRQ+ EGW+H+ R VA F T+ L+ W G+ F E
Sbjct: 231 SEFQAWKNGRTGFPIIDAAMRQMNQEGWMHNRLRMVVAMFFTKNMLH-DWRLGEKYFMES 289
Query: 233 LLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDK 272
L+D D++ N G W W +++ +FR+++P+ K DK
Sbjct: 290 LIDGDFSSNNGGWQWSASTGTDAAPYFRIFNPITQSKNFDK 330
>gi|257085148|ref|ZP_05579509.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis Fly1]
gi|256993178|gb|EEU80480.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis Fly1]
Length = 477
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 10/225 (4%)
Query: 48 GLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFG 107
G + IPL + GE A +RL + K ++ +E P + T+ LS +L+ G
Sbjct: 185 GEQIARIPLTHYSVGEETARRRLNTFIDQK--LQSYENKRDFP--YQDQTSHLSTFLRTG 240
Query: 108 CLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVD 167
LS+R + EL A+ P + + ++ WR+FY ++ S P + + +
Sbjct: 241 ELSIRTIWQEL----ASAPSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQ 296
Query: 168 WDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQS 227
W + + W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+
Sbjct: 297 WTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEK 355
Query: 228 VFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
F+++L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 356 YFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 400
>gi|186896329|ref|YP_001873441.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis
PB1/+]
gi|186699355|gb|ACC89984.1| DNA photolyase FAD-binding [Yersinia pseudotuberculosis PB1/+]
Length = 487
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 124/269 (46%), Gaps = 43/269 (15%)
Query: 31 QGILHPDEHLVPTMKE------------MGLDESSIPLCKFPGGETEALKRLEKSLANKE 78
Q +L D H VP K + S+ FP GE AL+RL + +E
Sbjct: 162 QRLLMSDNHCVPAPKTRHAPPVLLSPLPFDYPQQSVDSQLFPAGEDAALQRLRRFC--RE 219
Query: 79 WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL----KKILATGPHAKPPVSL 134
V+ + + P P T+ LSPYL G LS R ++ L ++L + +
Sbjct: 220 QVQDYRQYRDLPAV--PGTSCLSPYLVLGVLSPRQCFNRLWAESPEMLESADSGA--FTW 275
Query: 135 LGQIYWREFYYVVGSDTPNFDKMKGNKICCQ----------VDWDTNEKYLEAWSHGKTG 184
L ++ WREFY + P CQ + W+ +E L+AW G+TG
Sbjct: 276 LNELIWREFYRHLLVAYPRL---------CQHHPFIGWTDGLVWNRSESQLKAWQQGQTG 326
Query: 185 YPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGN 244
YP +DA MRQ+ GW+H+ R A FL + DL + W +G+ F L+D D A N G
Sbjct: 327 YPIVDAAMRQMNETGWMHNRLRMISASFLVK-DLLIDWRQGERYFMSQLVDGDLAANNGG 385
Query: 245 WMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
W W +++ +FR+++P G++ DK
Sbjct: 386 WQWAASTGTDAAPYFRIFNPTTQGERFDK 414
>gi|429089957|ref|ZP_19152689.1| Deoxyribodipyrimidine photolyase [Cronobacter universalis NCTC
9529]
gi|426509760|emb|CCK17801.1| Deoxyribodipyrimidine photolyase [Cronobacter universalis NCTC
9529]
Length = 468
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 106/217 (48%), Gaps = 11/217 (5%)
Query: 59 FPGGETEALKRLEK--SLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
FP GE ALKRL + A ++ K + P T++LSPYL G LS R H
Sbjct: 203 FPAGEEAALKRLREFCQTAAGDYPEKRDFPAIR------GTSLLSPYLAIGVLSPRQCLH 256
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYL 175
L L ++ WREFY + P+ + + +V W N+ +
Sbjct: 257 RLLTEHPRALEGGSGAVWLNELIWREFYRHLIVAWPHLCRHQPFIDWTARVAWQRNDAHF 316
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
+AW G+TGYP +DA MRQ+ GW+H+ R A FL + DL + W G+ F L+D
Sbjct: 317 QAWCEGRTGYPIVDAAMRQMNATGWMHNRLRMIAASFLVK-DLLVDWRRGERYFMSQLID 375
Query: 236 ADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D+A N G W W +++ +FR+++P G++ D
Sbjct: 376 GDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFD 412
>gi|448565094|ref|ZP_21636065.1| deoxyribodipyrimidine photolyase [Haloferax prahovense DSM 18310]
gi|445715753|gb|ELZ67506.1| deoxyribodipyrimidine photolyase [Haloferax prahovense DSM 18310]
Length = 482
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 113/234 (48%), Gaps = 10/234 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+PT+ ++G +E S + P G A +RL ++ + ++ P +T+ L
Sbjct: 192 LPTISDLGFEEPSASVQ--PAGTEAARERLSAFCSDA--IYRYADDRDYPT--RDATSRL 245
Query: 101 SPYLKFGCLSVRLFYHELKKIL--ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMK 158
S LKFG + +R Y G + Q+ WREFY V + PN
Sbjct: 246 STDLKFGTIGIREVYAATAAAREGVGGERDESVEEFQSQLAWREFYAHVLREHPNVVTEN 305
Query: 159 GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
+ + W + L AW GKTGYP +DA MRQLR E ++H+ R VA FLT+ DL
Sbjct: 306 YKEYENDIAWRDDADELAAWKEGKTGYPIVDAGMRQLREEAYMHNRVRMIVASFLTK-DL 364
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
W G + F E L D D A + G W W S++ Q +FR+++P+ G++ D
Sbjct: 365 LCDWRHGYAHFREHLADHDTANDNGGWQWASSTGTDAQPYFRIFNPMTQGERYD 418
>gi|423447663|ref|ZP_17424542.1| hypothetical protein IEC_02271 [Bacillus cereus BAG5O-1]
gi|401130074|gb|EJQ37743.1| hypothetical protein IEC_02271 [Bacillus cereus BAG5O-1]
Length = 476
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SVRL YH L K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVRLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + L+DAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLIDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|262277239|ref|ZP_06055032.1| deoxyribodipyrimidine photo-lyase [alpha proteobacterium HIMB114]
gi|262224342|gb|EEY74801.1| deoxyribodipyrimidine photo-lyase [alpha proteobacterium HIMB114]
Length = 470
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 118/215 (54%), Gaps = 12/215 (5%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FPG E ALK++ KS N E + ++K P S+E T+ LSP+L FG +S + Y E
Sbjct: 200 FPG-EDIALKKI-KSF-NSEKINFYDKNRDFP-SIE-GTSKLSPHLAFGEISPKKIYDEC 254
Query: 119 KKILATGPHAKPPVS-LLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEA 177
KI + K V+ L +I WREF Y + + P K K + W N+K+L+
Sbjct: 255 TKI----KNKKIGVTKFLNEIGWREFAYHLINHFPIMLKKNLRKNFDKFPWSENKKFLDK 310
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W G TGYP +DA M+QL GW+H+ R V FL + L ++W EG+ F++ LLD D
Sbjct: 311 WKKGNTGYPIVDAAMKQLYETGWMHNRLRMVVGSFLVKH-LRINWTEGEKYFKDTLLDYD 369
Query: 238 WAMNAGNWMWLSA-SAFFHQFFRVYSPVAFGKKTD 271
A N W W++ A +FR+++P+ G+K D
Sbjct: 370 TANNVSGWQWIAGCGADAAPYFRIFNPITQGEKFD 404
>gi|429099734|ref|ZP_19161840.1| Deoxyribodipyrimidine photolyase [Cronobacter dublinensis 582]
gi|426286074|emb|CCJ87953.1| Deoxyribodipyrimidine photolyase [Cronobacter dublinensis 582]
Length = 473
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 109/220 (49%), Gaps = 17/220 (7%)
Query: 59 FPGGETEALKRLEK--SLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
FP GE AL+RL + A ++ K + P T++LSPYL G LS R H
Sbjct: 203 FPAGEEAALQRLREFCQTAAGDYPEKRDFPAIR------GTSLLSPYLAIGVLSPRQCLH 256
Query: 117 ELKKILATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNE 172
++LA P A L ++ WREFY + P + + +V W N+
Sbjct: 257 ---RLLAEHPRALEGDSGAVWLNELIWREFYRHLIVAWPRLCRHQPFVDWTARVAWQQND 313
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
EAW G+TGYP +DA MRQ+ GW+H+ R A FL + DL + W G+ F
Sbjct: 314 ALFEAWCEGRTGYPIVDAAMRQMNTTGWMHNRLRMITASFLVK-DLLVDWRRGERYFMSQ 372
Query: 233 LLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
L+D D+A N G W W +++ +FR+++P G++ D
Sbjct: 373 LIDGDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFD 412
>gi|262278230|ref|ZP_06056015.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
calcoaceticus RUH2202]
gi|262258581|gb|EEY77314.1| deoxyribodipyrimidine photolyase FAD-binding [Acinetobacter
calcoaceticus RUH2202]
Length = 480
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 128/247 (51%), Gaps = 28/247 (11%)
Query: 43 TMKEMGLDE------SSIPLCK---FPGGETEALKRLEKSLANKEWVRKFEK--PNTAPN 91
+K +GL++ SSIP + +P GE AL++L+ + + K E+ PN
Sbjct: 188 NIKSLGLEDIEAFFDSSIPKEQQDLWPTGEDFALEQLDLFINDHLSHYKLERDFPNVK-- 245
Query: 92 SLEPSTTVLSPYLKFGCLSVR-----LFYHELKKILATGPHAKPPVSLLGQIYWREFYYV 146
T+ LSPYL G LS+R LF E T + + L ++ WREFY
Sbjct: 246 ----GTSQLSPYLNLGILSIRQCLQALFRAEHGNFHLTNEGQQ---TWLDELLWREFYQH 298
Query: 147 VGSDTPNFDKMKGNKICCQ-VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLA 205
+ D P+ K K Q + W+ N+++L AW +G+TG P IDA MRQL+ GW+H+
Sbjct: 299 ILFDFPHVSKHYPFKKNTQNIKWENNQEHLVAWQNGQTGIPIIDAGMRQLQKTGWMHNRV 358
Query: 206 RHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPV 264
R A FL + +L + W G+ F + L+D D A N G W W +++ +FR+++P+
Sbjct: 359 RMITAMFLCK-NLLIDWRVGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPI 417
Query: 265 AFGKKTD 271
A KK D
Sbjct: 418 AQSKKFD 424
>gi|336249301|ref|YP_004593011.1| deoxyribodipyrimidine photolyase [Enterobacter aerogenes KCTC 2190]
gi|334735357|gb|AEG97732.1| deoxyribodipyrimidine photolyase [Enterobacter aerogenes KCTC 2190]
Length = 469
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 93/181 (51%), Gaps = 7/181 (3%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
T+ LSP L G LS R H L + + S L +I WREFY + P
Sbjct: 234 GTSRLSPCLAVGVLSPRQCLHRLLREQPGALDGEAGASWLNEIIWREFYRHLMVYYPKL- 292
Query: 156 KMKGNKICC---QVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
KG +V W +NE L+AW G+TG+P +DA MRQL GW+H+ R VA F
Sbjct: 293 -CKGRPFVAWTDKVAWRSNEDELQAWQQGQTGFPIVDAAMRQLNATGWMHNRLRMIVASF 351
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
L + DL L W +G+ F L+D D A N G W W +++ +FR+++P G+K D
Sbjct: 352 LAK-DLRLDWRQGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFD 410
Query: 272 K 272
K
Sbjct: 411 K 411
>gi|317047331|ref|YP_004114979.1| deoxyribodipyrimidine photo-lyase [Pantoea sp. At-9b]
gi|316948948|gb|ADU68423.1| Deoxyribodipyrimidine photo-lyase [Pantoea sp. At-9b]
Length = 475
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 106/217 (48%), Gaps = 11/217 (5%)
Query: 59 FPGGETEALKRLEKSLANK--EWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
FP GE AL++L ++ + +KP T+ LS YL G LS R H
Sbjct: 204 FPAGEEAALQQLRHFAQQSVVDYAAERDKPAV------DGTSRLSVYLATGVLSPRQCLH 257
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYL 175
+ K L ++ WREFY + P K + V W N+++L
Sbjct: 258 RILKQHPDALDGGLAFVWLNELIWREFYRHLMVAFPALCKHQPFVGWTRHVRWQKNQRHL 317
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
AW GKTGYP +DA MRQL GW+H+ R VACFL + DL + W +G+ F + L+D
Sbjct: 318 TAWQQGKTGYPIVDAAMRQLNALGWMHNRLRMIVACFLVK-DLLIDWHDGERYFMQQLMD 376
Query: 236 ADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D A N G W W +++ +FR+++P G++ D
Sbjct: 377 GDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFD 413
>gi|22125169|ref|NP_668592.1| deoxyribodipyrimidine photolyase [Yersinia pestis KIM10+]
gi|45442282|ref|NP_993821.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Microtus
str. 91001]
gi|108811346|ref|YP_647113.1| deoxyribodipyrimidine photolyase [Yersinia pestis Nepal516]
gi|149365412|ref|ZP_01887447.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis
CA88-4125]
gi|162421421|ref|YP_001607911.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola]
gi|165925225|ref|ZP_02221057.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165937153|ref|ZP_02225718.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. IP275]
gi|166008496|ref|ZP_02229394.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166212293|ref|ZP_02238328.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167421168|ref|ZP_02312921.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167423664|ref|ZP_02315417.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167468999|ref|ZP_02333703.1| deoxyribodipyrimidine photolyase [Yersinia pestis FV-1]
gi|218929768|ref|YP_002347643.1| deoxyribodipyrimidine photolyase [Yersinia pestis CO92]
gi|229838256|ref|ZP_04458415.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229895550|ref|ZP_04510721.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Pestoides A]
gi|229898820|ref|ZP_04513965.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. India 195]
gi|229901594|ref|ZP_04516716.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Nepal516]
gi|270489781|ref|ZP_06206855.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27]
gi|294504486|ref|YP_003568548.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003]
gi|384122926|ref|YP_005505546.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D106004]
gi|384126809|ref|YP_005509423.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D182038]
gi|384139466|ref|YP_005522168.1| deoxyribodipyrimidine photolyase [Yersinia pestis A1122]
gi|384415591|ref|YP_005624953.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420553020|ref|ZP_15050328.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-02]
gi|420558580|ref|ZP_15055192.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-03]
gi|420564034|ref|ZP_15060048.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-04]
gi|420569077|ref|ZP_15064628.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-05]
gi|420574726|ref|ZP_15069742.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-06]
gi|420580056|ref|ZP_15074582.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-07]
gi|420585384|ref|ZP_15079413.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-08]
gi|420590518|ref|ZP_15084031.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-09]
gi|420595913|ref|ZP_15088884.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-10]
gi|420601535|ref|ZP_15093889.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-11]
gi|420606977|ref|ZP_15098798.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-12]
gi|420612394|ref|ZP_15103667.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-13]
gi|420617756|ref|ZP_15108361.1| DNA photolyase family protein [Yersinia pestis PY-14]
gi|420623037|ref|ZP_15113090.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-15]
gi|420628142|ref|ZP_15117725.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-16]
gi|420633265|ref|ZP_15122327.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-19]
gi|420638464|ref|ZP_15126998.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-25]
gi|420643927|ref|ZP_15131964.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-29]
gi|420649220|ref|ZP_15136767.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-32]
gi|420654878|ref|ZP_15141852.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-34]
gi|420660347|ref|ZP_15146762.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-36]
gi|420665638|ref|ZP_15151502.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-42]
gi|420670533|ref|ZP_15155959.1| DNA photolyase family protein [Yersinia pestis PY-45]
gi|420675883|ref|ZP_15160827.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-46]
gi|420681492|ref|ZP_15165902.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-47]
gi|420686803|ref|ZP_15170634.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-48]
gi|420697804|ref|ZP_15180306.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-53]
gi|420703521|ref|ZP_15184921.1| DNA photolyase family protein [Yersinia pestis PY-54]
gi|420708992|ref|ZP_15189669.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-55]
gi|420714448|ref|ZP_15194540.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-56]
gi|420719947|ref|ZP_15199279.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-58]
gi|420725437|ref|ZP_15204083.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-59]
gi|420731042|ref|ZP_15209109.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-60]
gi|420736060|ref|ZP_15213644.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-61]
gi|420741538|ref|ZP_15218567.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-63]
gi|420747183|ref|ZP_15223377.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-64]
gi|420752691|ref|ZP_15228251.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-65]
gi|420758346|ref|ZP_15232871.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-66]
gi|420763706|ref|ZP_15237496.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-71]
gi|420768947|ref|ZP_15242208.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-72]
gi|420773944|ref|ZP_15246722.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-76]
gi|420779527|ref|ZP_15251652.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-88]
gi|420785120|ref|ZP_15256548.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-89]
gi|420790313|ref|ZP_15261192.1| DNA photolyase family protein [Yersinia pestis PY-90]
gi|420795823|ref|ZP_15266149.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-91]
gi|420800878|ref|ZP_15270687.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-92]
gi|420806252|ref|ZP_15275550.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-93]
gi|420811580|ref|ZP_15280347.1| DNA photolyase family protein [Yersinia pestis PY-94]
gi|420817125|ref|ZP_15285344.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-95]
gi|420827514|ref|ZP_15294673.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-98]
gi|420833231|ref|ZP_15299841.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-99]
gi|420838075|ref|ZP_15304220.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-100]
gi|420843257|ref|ZP_15308919.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-101]
gi|420848911|ref|ZP_15314004.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-102]
gi|420854494|ref|ZP_15318773.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-103]
gi|420859777|ref|ZP_15323386.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-113]
gi|421764191|ref|ZP_16200983.1| deoxyribodipyrimidine photolyase [Yersinia pestis INS]
gi|21958032|gb|AAM84843.1|AE013730_2 deoxyribodipyrimidine photolyase (photoreactivation) [Yersinia
pestis KIM10+]
gi|45437146|gb|AAS62698.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis biovar
Microtus str. 91001]
gi|108774994|gb|ABG17513.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Nepal516]
gi|115348379|emb|CAL21314.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis CO92]
gi|149291825|gb|EDM41899.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis
CA88-4125]
gi|162354236|gb|ABX88184.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola]
gi|165915016|gb|EDR33628.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. IP275]
gi|165922832|gb|EDR39983.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165992878|gb|EDR45179.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166206224|gb|EDR50704.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166960657|gb|EDR56678.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167057834|gb|EDR67580.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229681523|gb|EEO77617.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Nepal516]
gi|229688368|gb|EEO80439.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. India 195]
gi|229694622|gb|EEO84669.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229701356|gb|EEO89384.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Pestoides A]
gi|262362522|gb|ACY59243.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D106004]
gi|262366473|gb|ACY63030.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D182038]
gi|270338285|gb|EFA49062.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27]
gi|294354945|gb|ADE65286.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003]
gi|320016095|gb|ADV99666.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342854595|gb|AEL73148.1| deoxyribodipyrimidine photolyase [Yersinia pestis A1122]
gi|391425862|gb|EIQ88096.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-02]
gi|391426528|gb|EIQ88704.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-03]
gi|391439765|gb|EIR00390.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-04]
gi|391441270|gb|EIR01775.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-05]
gi|391444732|gb|EIR04924.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-06]
gi|391456609|gb|EIR15620.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-07]
gi|391457600|gb|EIR16526.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-08]
gi|391459970|gb|EIR18708.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-09]
gi|391472759|gb|EIR30190.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-10]
gi|391474551|gb|EIR31831.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-11]
gi|391475170|gb|EIR32394.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-12]
gi|391488956|gb|EIR44747.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-13]
gi|391490139|gb|EIR45813.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-15]
gi|391491571|gb|EIR47119.1| DNA photolyase family protein [Yersinia pestis PY-14]
gi|391504403|gb|EIR58496.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-16]
gi|391505077|gb|EIR59114.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-19]
gi|391509951|gb|EIR63528.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-25]
gi|391520393|gb|EIR72946.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-29]
gi|391522601|gb|EIR74982.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-34]
gi|391523660|gb|EIR75952.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-32]
gi|391535615|gb|EIR86673.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-36]
gi|391538245|gb|EIR89065.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-42]
gi|391540465|gb|EIR91089.1| DNA photolyase family protein [Yersinia pestis PY-45]
gi|391553518|gb|EIS02837.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-46]
gi|391553991|gb|EIS03271.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-47]
gi|391554886|gb|EIS04092.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-48]
gi|391569662|gb|EIS17221.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-53]
gi|391575381|gb|EIS22105.1| DNA photolyase family protein [Yersinia pestis PY-54]
gi|391582438|gb|EIS28195.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-55]
gi|391585186|gb|EIS30620.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-56]
gi|391595896|gb|EIS39892.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-58]
gi|391598485|gb|EIS42198.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-60]
gi|391599985|gb|EIS43553.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-59]
gi|391612885|gb|EIS54907.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-61]
gi|391613474|gb|EIS55439.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-63]
gi|391617393|gb|EIS58941.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-64]
gi|391625715|gb|EIS66174.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-65]
gi|391632048|gb|EIS71614.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-66]
gi|391636532|gb|EIS75549.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-71]
gi|391638938|gb|EIS77685.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-72]
gi|391648656|gb|EIS86143.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-76]
gi|391652615|gb|EIS89658.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-88]
gi|391657171|gb|EIS93708.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-89]
gi|391661578|gb|EIS97608.1| DNA photolyase family protein [Yersinia pestis PY-90]
gi|391669556|gb|EIT04679.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-91]
gi|391678828|gb|EIT13013.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-93]
gi|391679816|gb|EIT13915.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-92]
gi|391680593|gb|EIT14621.1| DNA photolyase family protein [Yersinia pestis PY-94]
gi|391692750|gb|EIT25559.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-95]
gi|391697437|gb|EIT29832.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-98]
gi|391708633|gb|EIT39878.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-99]
gi|391713085|gb|EIT43895.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-100]
gi|391713730|gb|EIT44474.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-101]
gi|391725197|gb|EIT54686.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-102]
gi|391726962|gb|EIT56244.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-103]
gi|391729089|gb|EIT58115.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-113]
gi|411175505|gb|EKS45531.1| deoxyribodipyrimidine photolyase [Yersinia pestis INS]
Length = 487
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 123/269 (45%), Gaps = 43/269 (15%)
Query: 31 QGILHPDEHLVPTMKE------------MGLDESSIPLCKFPGGETEALKRLEKSLANKE 78
Q +L D H VP K + S+ FP GE AL+RL + +E
Sbjct: 162 QRLLMSDNHCVPAPKARHAPPVLLSPLPFDYPQQSVDSQLFPAGEDAALQRLRRFC--RE 219
Query: 79 WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL----KKILATGPHAKPPVSL 134
V+ + + P P T+ LSPYL G LS R ++ L ++L +
Sbjct: 220 QVQDYRQYRDLPAV--PGTSCLSPYLVLGVLSPRQCFNRLWAESPEMLENADSGA--FTW 275
Query: 135 LGQIYWREFYYVVGSDTPNFDKMKGNKICCQ----------VDWDTNEKYLEAWSHGKTG 184
L ++ WREFY + P CQ + W+ +E L+AW G+TG
Sbjct: 276 LNELIWREFYRHLLVAYPRL---------CQHHPFIGWTDGLVWNRSESQLKAWQQGQTG 326
Query: 185 YPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGN 244
YP +DA MRQ+ GW+H+ R A FL + DL + W +G+ F L+D D A N G
Sbjct: 327 YPIVDAAMRQMNETGWMHNRLRMISASFLVK-DLLIDWRQGERYFMSQLVDGDLAANNGG 385
Query: 245 WMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
W W +++ +FR+++P G++ DK
Sbjct: 386 WQWAASTGTDAAPYFRIFNPTTQGERFDK 414
>gi|423205555|ref|ZP_17192111.1| hypothetical protein HMPREF1168_01746 [Aeromonas veronii AMC34]
gi|404623830|gb|EKB20679.1| hypothetical protein HMPREF1168_01746 [Aeromonas veronii AMC34]
Length = 473
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 112/222 (50%), Gaps = 17/222 (7%)
Query: 58 KFPGGETEALKRL----EKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRL 113
++P GE EAL+RL E+++ + R F P A T+VLSPYL G +S R
Sbjct: 202 RWPVGEVEALRRLNIFLEQAVLDYGETRDF--PAIA------GTSVLSPYLAAGIISPRQ 253
Query: 114 FYHELKKILATGPHAK--PPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKI-CCQVDWDT 170
L++ L P +K P L ++ WREFY + P + K + W
Sbjct: 254 CVAALQQRLGYRPQSKAQPGFVWLNELVWREFYRHLLVLIPTLSMNRPFKPETADLPWSW 313
Query: 171 NEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFE 230
+ AW G+TGYP +DA MR L GW+H+ R VA FLT+ DL++ W G+ F
Sbjct: 314 DPDAFAAWCEGRTGYPIVDAAMRCLNATGWMHNRLRMIVASFLTK-DLHIHWRLGEDYFM 372
Query: 231 ELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
L+D D A N G W W + + A +FRV++P G++ D
Sbjct: 373 SRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFD 414
>gi|145598860|ref|YP_001162936.1| deoxyribodipyrimidine photolyase [Yersinia pestis Pestoides F]
gi|145210556|gb|ABP39963.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Pestoides
F]
Length = 487
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 123/269 (45%), Gaps = 43/269 (15%)
Query: 31 QGILHPDEHLVPTMKE------------MGLDESSIPLCKFPGGETEALKRLEKSLANKE 78
Q +L D H VP K + S+ FP GE AL+RL + +E
Sbjct: 162 QRLLMSDNHCVPAPKARHAPPVLLSPLPFDYPQQSVDSQLFPAGEDAALQRLRRFC--RE 219
Query: 79 WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL----KKILATGPHAKPPVSL 134
V+ + + P P T+ LSPYL G LS R ++ L ++L +
Sbjct: 220 QVQDYRQYRDLPAV--PGTSCLSPYLVLGVLSPRQCFNRLWAESPEMLENADSGA--FTW 275
Query: 135 LGQIYWREFYYVVGSDTPNFDKMKGNKICCQ----------VDWDTNEKYLEAWSHGKTG 184
L ++ WREFY + P CQ + W+ +E L+AW G+TG
Sbjct: 276 LNELIWREFYRHLLVAYPRL---------CQHHPFIGWTDGLVWNRSESQLKAWQQGQTG 326
Query: 185 YPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGN 244
YP +DA MRQ+ GW+H+ R A FL + DL + W +G+ F L+D D A N G
Sbjct: 327 YPIVDAAMRQMNETGWMHNRLRMISASFLVK-DLLIDWRQGERYFMSQLVDGDLAANNGG 385
Query: 245 WMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
W W +++ +FR+++P G++ DK
Sbjct: 386 WQWAASTGTDAAPYFRIFNPTTQGERFDK 414
>gi|410944062|ref|ZP_11375803.1| deoxyribodipyrimidine photolyase [Gluconobacter frateurii NBRC
101659]
Length = 483
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/178 (39%), Positives = 97/178 (54%), Gaps = 7/178 (3%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFY-YVVGSDTPNF 154
T+ LSPYL G +S R + L+K G H + L +I WREF Y +
Sbjct: 247 GTSRLSPYLASGAISPRQIWAALQK---KGAHDEGARIFLSEIGWREFAKYTLFHQARLP 303
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
D G K ++ W +EK L AW G+TG P +DA MRQL GW+H+ AR V FLT
Sbjct: 304 DTSLGQKFE-KMPWRKSEKDLLAWQQGRTGVPIVDAGMRQLWKTGWMHNRARMIVGSFLT 362
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
+ L + W EG++ F + L+DADWA NA NW W++ + FFR+++P G K D
Sbjct: 363 K-HLLIDWREGEAWFRDTLVDADWASNAMNWQWVAGTGIDASPFFRIFNPTRQGVKFD 419
>gi|262173169|ref|ZP_06040846.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451]
gi|261890527|gb|EEY36514.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451]
Length = 469
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 98/177 (55%), Gaps = 3/177 (1%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T++LSPYL G LS R L + ++ L ++ WREFY + + PN K
Sbjct: 236 TSILSPYLAIGALSARQCVARLYRESEMSALSEGAQVWLSELIWREFYQHLVAIEPNISK 295
Query: 157 MKGN-KICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
+ + +++W + + + W G TGYP +DA MRQL GW+H+ R VA FLT+
Sbjct: 296 SRDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTK 355
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL++ W G+ F L+D D+A N G W W +++ Q +FR+++PV+ G+K D
Sbjct: 356 -DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411
>gi|209965317|ref|YP_002298232.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
centenum SW]
gi|209958783|gb|ACI99419.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
centenum SW]
Length = 489
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 92/284 (32%), Positives = 131/284 (46%), Gaps = 35/284 (12%)
Query: 3 YQKLVSVLESLPKPKPADD-------APTSLPRECQGILHPDEHLVPTMKEM--GLDESS 53
+ + VS P+P A D AP S P E G+L PT + GL ++
Sbjct: 153 FWRAVSSSPDWPEPLAAPDRLEAPPTAPASDPLESWGLL-------PTTPDWAGGLRQAW 205
Query: 54 IPLCKFPGGETEALKRLEKSL--ANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
P GE RL L A ++ ++P + T+ LSPYL FG +S
Sbjct: 206 QP------GEAAVAARLRAFLEGAAADYAEGRDRPGSD------GTSRLSPYLHFGEISP 253
Query: 112 RLFYHELKKILATG---PHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDW 168
R + + + +G H + S L ++ WREF Y + P + N W
Sbjct: 254 RQVWAATRDAMLSGNPPEHRRHAESFLRELGWREFCYNLLYHFPKLPERPLNPRFEDFPW 313
Query: 169 DTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSV 228
+ L++W G+TGYP +DA MRQL GW+H+ R V FL + L L W+EGQ
Sbjct: 314 QPDSAALDSWQRGRTGYPIVDAGMRQLWTTGWMHNRVRMIVGSFLVK-HLLLPWQEGQRW 372
Query: 229 FEELLLDADWAMNAGNWMWLSA-SAFFHQFFRVYSPVAFGKKTD 271
F + L+DAD A NA W W++ A +FRV++PV G K D
Sbjct: 373 FWDTLVDADLANNAAGWQWIAGCGADAAPYFRVFNPVLQGGKFD 416
>gi|226315066|ref|YP_002774962.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
gi|226098016|dbj|BAH46458.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
Length = 484
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 111/214 (51%), Gaps = 8/214 (3%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GE A KRL++ L + K ++ N+ T+ LS L G LS+R YH ++++
Sbjct: 205 GERAARKRLQQFLDRDIYTYKEKRDMPGVNA----TSRLSFALNAGTLSIRTVYHRVQEV 260
Query: 122 LAT--GPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
LA+ G + L ++ WREFY V P+ +V W+ + W
Sbjct: 261 LASARGEQVTSIEAFLTELIWREFYQQVLYFHPHTTNHAYLPQFEEVAWENKKDLFVRWC 320
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
G+TGYP +DA M+QL GW+H+ R A FLT+ DL + W G + F + L+D D A
Sbjct: 321 QGETGYPIVDAAMKQLNETGWMHNRLRMITASFLTK-DLLVDWRWGMAYFAQQLIDFDEA 379
Query: 240 MNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDK 272
N G W W +++ Q +FR+++PV G+K D+
Sbjct: 380 ANIGGWQWSASTGTDAQPYFRIFNPVTQGEKFDR 413
>gi|398817002|ref|ZP_10575637.1| deoxyribodipyrimidine photolyase [Brevibacillus sp. BC25]
gi|398031514|gb|EJL24900.1| deoxyribodipyrimidine photolyase [Brevibacillus sp. BC25]
Length = 484
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 109/213 (51%), Gaps = 8/213 (3%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GE A KRL++ L + K ++ N+ T+ LS L G LS+R YH ++++
Sbjct: 205 GERAAQKRLQQFLNGDIYTYKEKRDMPGVNA----TSRLSFALNTGTLSIRTVYHSVQEV 260
Query: 122 LAT--GPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
LA G + L ++ WREFY V P+ V W+ + W
Sbjct: 261 LARARGEQVTSIEAFLTELIWREFYQQVLYFHPHTTDHAYLPQFETVAWENRKDLFTRWC 320
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
HG+TGYP +DA M+QL GW+H+ R A FLT+ DL + W G + F + L+D D A
Sbjct: 321 HGETGYPIVDAAMKQLNETGWMHNRLRMITASFLTK-DLLVDWRWGMAYFAQQLVDFDEA 379
Query: 240 MNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
N G W W +++ Q +FR+++PV G+K D
Sbjct: 380 ANIGGWQWSASTGTDAQPYFRIFNPVTQGEKFD 412
>gi|421912953|ref|ZP_16342657.1| Deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410113178|emb|CCM85282.1| Deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
Length = 484
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 113/256 (44%), Gaps = 22/256 (8%)
Query: 30 CQGILHPDEHLVPTMKEMGLDESSIPLCKFPG-----GETEALKRL----EKSLANKEWV 80
C P P + L E + P F G E AL RL +++ A+ E
Sbjct: 169 CVAAPKPXXRQAPARQAPPLPELNYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQ 228
Query: 81 RKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYW 140
R F P T+ LSP L G LS R H L + L ++ W
Sbjct: 229 RDF------PXXAVEGTSRLSPCLAIGVLSPRQCLHRLLTEHPAALDGGAGATWLNELIW 282
Query: 141 REFYYVVGSDTPNFDKMKGNKICC---QVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRL 197
REFY + P KG +V W E L+AW G+TG+P +DA MRQL
Sbjct: 283 REFYRHLMVYYPKL--CKGRPFTAWTDKVAWRAEEASLQAWQRGETGFPIVDAAMRQLNA 340
Query: 198 EGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQ 256
GW+H+ R VA FLT+ DL L W G+ F L+D D A N G W W +++
Sbjct: 341 TGWMHNRLRMIVASFLTK-DLRLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAP 399
Query: 257 FFRVYSPVAFGKKTDK 272
+FR+++P G+K DK
Sbjct: 400 YFRIFNPTTQGEKFDK 415
>gi|292898878|ref|YP_003538247.1| deoxyribodipyrimidine photolyase [Erwinia amylovora ATCC 49946]
gi|291198726|emb|CBJ45835.1| deoxyribodipyrimidine photolyase [Erwinia amylovora ATCC 49946]
Length = 482
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 109/232 (46%), Gaps = 7/232 (3%)
Query: 43 TMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSP 102
++K I FP GE A+ RL + ++ V + K P T+ LS
Sbjct: 189 SLKPFDYPREDIESSLFPSGEKAAIARLREFC--QQAVTDYPKQRDLP--ARDGTSRLSV 244
Query: 103 YLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NK 161
YL G LS R H L K G L ++ WREFY + P + + +
Sbjct: 245 YLATGVLSPRQCLHRLLKQHPAGLEDSRVFVWLNELIWREFYRHLLVAFPALCRHQPFTR 304
Query: 162 ICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLS 221
V W +++ L AW GKTGYP +DA MRQL GW+H+ R A FL + DL +
Sbjct: 305 WTNSVKWRDDKQQLTAWQQGKTGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK-DLLID 363
Query: 222 WEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
W EG+ F LLD D A N G W W +++ +FR+++P G++ DK
Sbjct: 364 WREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDK 415
>gi|153947154|ref|YP_001400093.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
31758]
gi|152958649|gb|ABS46110.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
31758]
Length = 487
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 123/269 (45%), Gaps = 43/269 (15%)
Query: 31 QGILHPDEHLVPTMKE------------MGLDESSIPLCKFPGGETEALKRLEKSLANKE 78
Q +L D H VP K + S+ FP GE AL+RL + +E
Sbjct: 162 QRLLMSDNHCVPAPKARHAPPVLLSPLPFDYPQQSVDSQLFPAGEDAALQRLRRFC--RE 219
Query: 79 WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL----KKILATGPHAKPPVSL 134
V+ + + P P T+ LSPYL G LS R ++ L ++L +
Sbjct: 220 QVQDYRQYRDLPAV--PGTSCLSPYLVLGVLSPRQCFNRLWAESPEMLENADSGA--FTW 275
Query: 135 LGQIYWREFYYVVGSDTPNFDKMKGNKICCQ----------VDWDTNEKYLEAWSHGKTG 184
L ++ WREFY + P CQ + W+ +E L+AW G+TG
Sbjct: 276 LNELIWREFYRHLLVAYPRL---------CQHHPFIGWTDGLVWNRSESQLKAWQQGQTG 326
Query: 185 YPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGN 244
YP +DA MRQ+ GW+H+ R A FL + DL + W +G+ F L+D D A N G
Sbjct: 327 YPIVDAAMRQMNETGWMHNRLRMISASFLVK-DLLIDWRQGERYFMSQLVDGDLAANNGG 385
Query: 245 WMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
W W +++ +FR+++P G++ DK
Sbjct: 386 WQWAASTGTDAAPYFRIFNPTTQGERFDK 414
>gi|170023409|ref|YP_001719914.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis
YPIII]
gi|169749943|gb|ACA67461.1| Deoxyribodipyrimidine photo-lyase [Yersinia pseudotuberculosis
YPIII]
Length = 487
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 123/269 (45%), Gaps = 43/269 (15%)
Query: 31 QGILHPDEHLVPTMKE------------MGLDESSIPLCKFPGGETEALKRLEKSLANKE 78
Q +L D H VP K + S+ FP GE AL+RL + +E
Sbjct: 162 QRLLMSDNHCVPAPKARHAPPVLLSPLPFDYPQQSVDSQLFPAGEDAALQRLRRFC--RE 219
Query: 79 WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL----KKILATGPHAKPPVSL 134
V+ + + P P T+ LSPYL G LS R ++ L ++L +
Sbjct: 220 QVQDYRQYRDLPAV--PGTSCLSPYLVLGVLSPRQCFNRLWAESPEMLENADSGA--FTW 275
Query: 135 LGQIYWREFYYVVGSDTPNFDKMKGNKICCQ----------VDWDTNEKYLEAWSHGKTG 184
L ++ WREFY + P CQ + W+ +E L+AW G+TG
Sbjct: 276 LNELIWREFYRHLLVAYPRL---------CQHHPFIGWTDGLVWNRSESQLKAWQQGQTG 326
Query: 185 YPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGN 244
YP +DA MRQ+ GW+H+ R A FL + DL + W +G+ F L+D D A N G
Sbjct: 327 YPIVDAAMRQMNETGWMHNRLRMISASFLVK-DLLIDWRQGERYFMSQLVDGDLAANNGG 385
Query: 245 WMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
W W +++ +FR+++P G++ DK
Sbjct: 386 WQWAASTGTDAAPYFRIFNPTTQGERFDK 414
>gi|229046850|ref|ZP_04192484.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676]
gi|229110596|ref|ZP_04240162.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15]
gi|423586430|ref|ZP_17562517.1| hypothetical protein IIE_01842 [Bacillus cereus VD045]
gi|228672847|gb|EEL28125.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15]
gi|228724483|gb|EEL75806.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676]
gi|401229948|gb|EJR36456.1| hypothetical protein IIE_01842 [Bacillus cereus VD045]
Length = 476
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L +H L K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ E+ L W GKTGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKSFEHFPWNKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|407705549|ref|YP_006829134.1| hypothetical protein MC28_2313 [Bacillus thuringiensis MC28]
gi|407383234|gb|AFU13735.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis MC28]
Length = 476
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SVRL YH L K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVRLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ ++ L W G+TGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKSFEHFPWNNEDELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|407796462|ref|ZP_11143416.1| deoxyribodipyrimidine photo-lyase [Salimicrobium sp. MJ3]
gi|407019247|gb|EKE31965.1| deoxyribodipyrimidine photo-lyase [Salimicrobium sp. MJ3]
Length = 472
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 7/223 (3%)
Query: 52 SSIPLCKFPG-GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLS 110
+ PL K+ GE A +RL + L E + +++ P+ T+++S YL+ G +S
Sbjct: 190 TKAPLRKWEEVGEEAAEQRLTRFL--DEPIYYYDEDRDIPSK--DGTSLMSRYLRTGAIS 245
Query: 111 VRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDT 170
R YH +++ S + ++ +R+FY++V + P D + + + W+
Sbjct: 246 PRTVYHRVQQETDGRKRQDGVESFIRELAFRDFYHMVYYNHPEADDQELTEKFRDIPWNE 305
Query: 171 NEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFE 230
+E+ + W +TG+PFIDA M Q+ GW+H+ AR AVA FLT+ DL + W +G+ F
Sbjct: 306 DEEIFDRWKEARTGFPFIDAAMAQMNESGWMHNRARMAVASFLTK-DLLIDWRKGERYFN 364
Query: 231 ELLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTDK 272
L D + A N G W W +++ +FRV++PV ++ DK
Sbjct: 365 RKLADYEAASNIGGWQWAASTGTDAVPYFRVFNPVRQSERFDK 407
>gi|444920567|ref|ZP_21240408.1| Deoxyribodipyrimidine photo-lyase [Wohlfahrtiimonas chitiniclastica
SH04]
gi|444508386|gb|ELV08557.1| Deoxyribodipyrimidine photo-lyase [Wohlfahrtiimonas chitiniclastica
SH04]
Length = 457
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 119/244 (48%), Gaps = 19/244 (7%)
Query: 41 VPTMKEMGLDESSIPL--------CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS 92
+P GL I + + GE A L+ L KE + + P
Sbjct: 172 IPVQAPTGLTSDDIQVNPYQAFDDLAYQAGEDAAFGVLQDFL--KEDIFHYHNHRDMPAI 229
Query: 93 LEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLL---GQIYWREFYYVVGS 149
T+ LSPYL G +SV+ E IL G +L ++YWREFYY +
Sbjct: 230 --DGTSRLSPYLTQGVVSVKALLRE-ALILNEGHFKTGDEGILTWMNELYWREFYYHIMW 286
Query: 150 DTPNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHA 208
+ PN K + + ++ W NE +AW +GKTG P +DA MRQL+ GW+H+ R
Sbjct: 287 NFPNVSKNRAFQEKTEKIQWRDNEADFDAWKNGKTGVPIVDAFMRQLKATGWMHNRGRMI 346
Query: 209 VACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFG 267
A FLT+ +L + W +G++ F + L+D D+A N G W W +++ +FR+++PV
Sbjct: 347 TAMFLTK-NLLIDWRKGEAWFMQNLIDGDFAANNGGWQWSASTGTDAVPYFRIFNPVTQS 405
Query: 268 KKTD 271
++ D
Sbjct: 406 ERFD 409
>gi|420547711|ref|ZP_15045581.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-01]
gi|391424563|gb|EIQ86924.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-01]
Length = 487
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 123/269 (45%), Gaps = 43/269 (15%)
Query: 31 QGILHPDEHLVPTMKE------------MGLDESSIPLCKFPGGETEALKRLEKSLANKE 78
Q +L D H VP K + S+ FP GE AL+RL + +E
Sbjct: 162 QRLLMSDNHCVPAPKARHAPPVLLSPLPFDYPQQSVDSQLFPAGEDAALQRLRRFC--RE 219
Query: 79 WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL----KKILATGPHAKPPVSL 134
V+ + + P P T+ LSPYL G LS R ++ L ++L +
Sbjct: 220 QVQDYRQYRDLPAV--PGTSCLSPYLVLGVLSPRQCFNRLWAESPEMLENADSGA--FTW 275
Query: 135 LGQIYWREFYYVVGSDTPNFDKMKGNKICCQ----------VDWDTNEKYLEAWSHGKTG 184
L ++ WREFY + P CQ + W+ +E L+AW G+TG
Sbjct: 276 LNELIWREFYRHLLVAYPRL---------CQHHPFIGWTDGLVWNRSESQLKAWQQGQTG 326
Query: 185 YPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGN 244
YP +DA MRQ+ GW+H+ R A FL + DL + W +G+ F L+D D A N G
Sbjct: 327 YPIVDAAMRQMNETGWMHNRLRMISASFLVK-DLLIDWRQGERYFMSQLVDGDLAANNGG 385
Query: 245 WMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
W W +++ +FR+++P G++ DK
Sbjct: 386 WQWAASTGTDAAPYFRIFNPTTQGERFDK 414
>gi|374628763|ref|ZP_09701148.1| deoxyribodipyrimidine photo-lyase type I [Methanoplanus limicola
DSM 2279]
gi|373906876|gb|EHQ34980.1| deoxyribodipyrimidine photo-lyase type I [Methanoplanus limicola
DSM 2279]
Length = 476
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 120/247 (48%), Gaps = 22/247 (8%)
Query: 34 LHPDEHLVPTMKEMGLD--------ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEK 85
++PD++++P ++ ++ GG EAL L K K++
Sbjct: 184 INPDKNIIPGGSNTKIEVKYGTEGLKTGSERNHLKGGRAEALNLLGKLAELKDYSNTRNI 243
Query: 86 PNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYY 145
P+ TT LS +LKFG +SVR Y+ + L LL Q+YWR+FY
Sbjct: 244 PSVK------GTTYLSAHLKFGTVSVREVYNAIAGTLGYDS------ELLRQLYWRDFYI 291
Query: 146 VVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLA 205
P+ ++ ++ W+ +EK E W G TG+P +DA MR+L G++H+
Sbjct: 292 YTAFHNPHIFTGPFHRKYEKLPWNNDEKLFEKWCTGNTGFPIVDAGMRELNSTGYMHNRV 351
Query: 206 RHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPV 264
R A FL + DL+++W G+ F LLD D +N GNW W +++ Q +FR+++P
Sbjct: 352 RMITASFLVK-DLHINWMRGERYFASKLLDYDPCINNGNWQWSASTGSDSQPWFRIFNPW 410
Query: 265 AFGKKTD 271
KK D
Sbjct: 411 LQQKKYD 417
>gi|51597229|ref|YP_071420.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
32953]
gi|51590511|emb|CAH22151.1| putative deoxyribodipyrimidine photolyase [Yersinia
pseudotuberculosis IP 32953]
Length = 487
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 123/269 (45%), Gaps = 43/269 (15%)
Query: 31 QGILHPDEHLVPTMKE------------MGLDESSIPLCKFPGGETEALKRLEKSLANKE 78
Q +L D H VP K + S+ FP GE AL+RL + +E
Sbjct: 162 QRLLMSDNHCVPAPKARHAPPVLLSPLPFDYPQQSVDSQLFPAGEDAALQRLRRFC--RE 219
Query: 79 WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL----KKILATGPHAKPPVSL 134
V+ + + P P T+ LSPYL G LS R ++ L ++L +
Sbjct: 220 QVQDYRQYRDLPAV--PGTSCLSPYLVLGVLSPRQCFNRLWAESPEMLENADSGA--FTW 275
Query: 135 LGQIYWREFYYVVGSDTPNFDKMKGNKICCQ----------VDWDTNEKYLEAWSHGKTG 184
L ++ WREFY + P CQ + W+ +E L+AW G+TG
Sbjct: 276 LNELIWREFYRHLLVAYPRL---------CQHHPFIGWTDGLVWNRSESQLKAWQQGQTG 326
Query: 185 YPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGN 244
YP +DA MRQ+ GW+H+ R A FL + DL + W +G+ F L+D D A N G
Sbjct: 327 YPIVDAAMRQMNETGWMHNRLRMISASFLVK-DLLIDWRQGERYFMSQLVDGDLAANNGG 385
Query: 245 WMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
W W +++ +FR+++P G++ DK
Sbjct: 386 WQWAASTGTDAAPYFRIFNPTTQGERFDK 414
>gi|108808420|ref|YP_652336.1| deoxyribodipyrimidine photolyase [Yersinia pestis Antiqua]
gi|167398528|ref|ZP_02304052.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|108780333|gb|ABG14391.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Antiqua]
gi|167051032|gb|EDR62440.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. UG05-0454]
Length = 485
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 123/269 (45%), Gaps = 43/269 (15%)
Query: 31 QGILHPDEHLVPTMKE------------MGLDESSIPLCKFPGGETEALKRLEKSLANKE 78
Q +L D H VP K + S+ FP GE AL+RL + +E
Sbjct: 162 QRLLMSDNHCVPAPKARHAPPVLLSPLPFDYPQQSVDSQLFPAGEDAALQRLRRFC--RE 219
Query: 79 WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL----KKILATGPHAKPPVSL 134
V+ + + P P T+ LSPYL G LS R ++ L ++L +
Sbjct: 220 QVQDYRQYRDLPAV--PGTSCLSPYLVLGVLSPRQCFNRLWAESPEMLENADSGA--FTW 275
Query: 135 LGQIYWREFYYVVGSDTPNFDKMKGNKICCQ----------VDWDTNEKYLEAWSHGKTG 184
L ++ WREFY + P CQ + W+ +E L+AW G+TG
Sbjct: 276 LNELIWREFYRHLLVAYPRL---------CQHHPFIGWTDGLVWNRSESQLKAWQQGQTG 326
Query: 185 YPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGN 244
YP +DA MRQ+ GW+H+ R A FL + DL + W +G+ F L+D D A N G
Sbjct: 327 YPIVDAAMRQMNETGWMHNRLRMISASFLVK-DLLIDWRQGERYFMSQLVDGDLAANNGG 385
Query: 245 WMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
W W +++ +FR+++P G++ DK
Sbjct: 386 WQWAASTGTDAAPYFRIFNPTTQGERFDK 414
>gi|420822431|ref|ZP_15290112.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-96]
gi|391695682|gb|EIT28232.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-96]
Length = 480
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 123/269 (45%), Gaps = 43/269 (15%)
Query: 31 QGILHPDEHLVPTMKE------------MGLDESSIPLCKFPGGETEALKRLEKSLANKE 78
Q +L D H VP K + S+ FP GE AL+RL + +E
Sbjct: 162 QRLLMSDNHCVPAPKARHAPPVLLSPLPFDYPQQSVDSQLFPAGEDAALQRLRRFC--RE 219
Query: 79 WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL----KKILATGPHAKPPVSL 134
V+ + + P P T+ LSPYL G LS R ++ L ++L +
Sbjct: 220 QVQDYRQYRDLPAV--PGTSCLSPYLVLGVLSPRQCFNRLWAESPEMLENADSGA--FTW 275
Query: 135 LGQIYWREFYYVVGSDTPNFDKMKGNKICCQ----------VDWDTNEKYLEAWSHGKTG 184
L ++ WREFY + P CQ + W+ +E L+AW G+TG
Sbjct: 276 LNELIWREFYRHLLVAYPRL---------CQHHPFIGWTDGLVWNRSESQLKAWQQGQTG 326
Query: 185 YPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGN 244
YP +DA MRQ+ GW+H+ R A FL + DL + W +G+ F L+D D A N G
Sbjct: 327 YPIVDAAMRQMNETGWMHNRLRMISASFLVK-DLLIDWRQGERYFMSQLVDGDLAANNGG 385
Query: 245 WMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
W W +++ +FR+++P G++ DK
Sbjct: 386 WQWAASTGTDAAPYFRIFNPTTQGERFDK 414
>gi|424798652|ref|ZP_18224194.1| Deoxyribodipyrimidine photolyase [Cronobacter sakazakii 696]
gi|423234373|emb|CCK06064.1| Deoxyribodipyrimidine photolyase [Cronobacter sakazakii 696]
Length = 473
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 105/217 (48%), Gaps = 11/217 (5%)
Query: 59 FPGGETEALKRLEK--SLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
FP GE ALKRL + A ++ K + P T++LSPYL G LS R H
Sbjct: 203 FPAGEEAALKRLREFCQTAAGDYPEKRDFPAIR------GTSLLSPYLAIGVLSPRQCLH 256
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYL 175
L L ++ WREFY + P+ + + +V W N+ +
Sbjct: 257 RLLTEHPRALEGGSGAVWLNELIWREFYRHLIVAWPHLCRHQPFIDWTARVAWQQNDAHF 316
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
+AW G TGYP +DA MRQ+ GW+H+ R A FL + DL + W G+ F L+D
Sbjct: 317 QAWCEGNTGYPIVDAAMRQMNATGWMHNRLRMITASFLVK-DLLVDWRRGERYFMSQLID 375
Query: 236 ADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D+A N G W W +++ +FR+++P G++ D
Sbjct: 376 GDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFD 412
>gi|408673564|ref|YP_006873312.1| cryptochrome, DASH family [Emticicia oligotrophica DSM 17448]
gi|387855188|gb|AFK03285.1| cryptochrome, DASH family [Emticicia oligotrophica DSM 17448]
Length = 475
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 127/245 (51%), Gaps = 9/245 (3%)
Query: 10 LESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSI---PLCKFPGGETEA 66
+E K + DAP +LP+ + + D +PT++ +G ++ + F GGET A
Sbjct: 159 VERSAKIRRTFDAPKTLPKVDKSV---DLGEMPTLESLGYEKPKFDKRSVLAFRGGETSA 215
Query: 67 LKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGP 126
L RL++ + +K+ + +++ + ST S +L GC+S R Y E+KK
Sbjct: 216 LYRLDEYIWDKDLPKTYKETRNGLVGGDYSTK-FSAWLSLGCISPRTIYEEVKKYEKEVE 274
Query: 127 HAKPPVSLLGQIYWREFYYVVGSD-TPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGY 185
+ ++ ++ WR++++ + K G K W N++ E W +G+TG
Sbjct: 275 ANESTYWIIFELIWRDYFHFIALKFGTRIFKQSGVKNDLMKQWKRNQEVFEKWKNGETGV 334
Query: 186 PFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNW 245
PFIDA M++L+L G++ + R VACFL++ DL + W G + FE L+D D N GNW
Sbjct: 335 PFIDANMKELKLTGFMSNRGRQNVACFLSK-DLGIDWTWGAAYFESQLIDYDVCSNWGNW 393
Query: 246 MWLSA 250
+++
Sbjct: 394 NYVAG 398
>gi|422909456|ref|ZP_16944104.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-09]
gi|424658839|ref|ZP_18096090.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-16]
gi|341635145|gb|EGS59869.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-09]
gi|408053914|gb|EKG88912.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-16]
Length = 469
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 100/181 (55%), Gaps = 11/181 (6%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSPYL G LS R L + G ++ L ++ WREFY + + PN K
Sbjct: 236 TSSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295
Query: 157 MK-----GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVAC 211
+ G ++ W+ NEK+ + W G TGYP +DA MRQL GW+H+ R VA
Sbjct: 296 SRDFVEWGARLEW---WNDNEKF-QLWCEGNTGYPIVDAAMRQLNQIGWMHNRLRMIVAS 351
Query: 212 FLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKT 270
FLT+ DL++ W G+ F L+D D+A N G W W +++ Q +FR+++PV+ G+K
Sbjct: 352 FLTK-DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKF 410
Query: 271 D 271
D
Sbjct: 411 D 411
>gi|228940236|ref|ZP_04102807.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228973152|ref|ZP_04133742.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228979734|ref|ZP_04140058.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407]
gi|384187171|ref|YP_005573067.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410675484|ref|YP_006927855.1| deoxyribodipyrimidine photo-lyase Phr [Bacillus thuringiensis
Bt407]
gi|452199537|ref|YP_007479618.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228780047|gb|EEM28290.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407]
gi|228786555|gb|EEM34544.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228819362|gb|EEM65416.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326940880|gb|AEA16776.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|409174613|gb|AFV18918.1| deoxyribodipyrimidine photo-lyase Phr [Bacillus thuringiensis
Bt407]
gi|452104930|gb|AGG01870.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 476
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L +H L K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ E+ L W GKTGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYRPLNKSFENFPWNKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|421852148|ref|ZP_16284838.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
gi|371479515|dbj|GAB30041.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
Length = 473
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 107/205 (52%), Gaps = 12/205 (5%)
Query: 70 LEKSLANKEWVR-KFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPH- 127
+E +LA+ E R + + P+ T++LSPY++ G +SVR +H ++ PH
Sbjct: 222 IENALADYETQRDRADAPH--------GTSLLSPYIRVGQISVRQIWHAIRHAEHQNPHL 273
Query: 128 AKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPF 187
A L ++ WR+F ++ TP+ + W + L AW G+TG+P
Sbjct: 274 ATAAEKFLAELGWRDFAWMQMFTTPDLATRNLRAEFDHMPWRADAADLAAWQQGQTGFPL 333
Query: 188 IDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMW 247
+DA MRQL GW+H+ R VA FLT+ L W EG+ F LLDAD A+NA NW W
Sbjct: 334 VDAGMRQLARTGWMHNRVRMVVASFLTK-HLLTDWREGERWFYAQLLDADAAVNAMNWQW 392
Query: 248 LSASAF-FHQFFRVYSPVAFGKKTD 271
+ + +FR+++PV +K D
Sbjct: 393 GAGTGIDAAPWFRIFNPVGQSEKYD 417
>gi|389848325|ref|YP_006350564.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
gi|448618531|ref|ZP_21666768.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
gi|388245631|gb|AFK20577.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
gi|445746902|gb|ELZ98360.1| deoxyribodipyrimidine photolyase [Haloferax mediterranei ATCC
33500]
Length = 482
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 113/234 (48%), Gaps = 10/234 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+PT+ ++G DE S + G A KRL + + ++ A N+ T+ L
Sbjct: 192 LPTISDLGFDEPSADIVS--AGTDAARKRLADFCEDAIYRYADDRDYPARNA----TSRL 245
Query: 101 SPYLKFGCLSVRLFYHELKKIL--ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMK 158
S LKFG + +R Y + G + + Q+ WREFY V PN
Sbjct: 246 STDLKFGTIGIREVYAATAEAREGVGGEQDESVETFQSQLAWREFYAHVLRYNPNVVTEN 305
Query: 159 GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
+ + W + L AW G+TGYP +DA MRQL+ E ++H+ R VA FLT+ DL
Sbjct: 306 YKEYEHDIQWRDDSDELAAWKEGRTGYPIVDAGMRQLKKEAYMHNRVRMIVASFLTK-DL 364
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+W G F E L D D A + G W W +++ Q +FR+++P+ G++ D
Sbjct: 365 LCNWRHGYDHFREYLSDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYD 418
>gi|344924235|ref|ZP_08777696.1| deoxyribodipyrimidine photo-lyase [Candidatus Odyssella
thessalonicensis L13]
Length = 473
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 103/180 (57%), Gaps = 3/180 (1%)
Query: 94 EPSTTVLSPYLKFGCLSVRLFYHELKKILATGP-HAKPPVSLLGQIYWREFYYVVGSDTP 152
+ +T++LSP+L +G +SVR +H + + P + ++ L +I WREF Y + P
Sbjct: 225 QQATSLLSPHLAWGEISVRQLWHAIHTQIRLYPVLEQDALNFLSEIGWREFSYHLLYHVP 284
Query: 153 NFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
+ W +E L WS G+TGYP IDA MR+L G++H+ R VA F
Sbjct: 285 TLPTHPLRQQFANFPWQQDENALRKWSQGQTGYPIIDAGMRELWHTGYMHNRVRMIVASF 344
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSA-SAFFHQFFRVYSPVAFGKKTD 271
L + DL LSW++G++ F + L+DAD A N+ +W W++ A +FRV++PV G+K D
Sbjct: 345 LVK-DLLLSWQQGEAWFWDTLVDADLANNSASWQWVAGCGADAAPYFRVFNPVLQGEKFD 403
>gi|83858274|ref|ZP_00951796.1| Deoxyribodipyrimidine photolyase [Oceanicaulis sp. HTCC2633]
gi|83853097|gb|EAP90949.1| Deoxyribodipyrimidine photolyase [Oceanicaulis sp. HTCC2633]
Length = 480
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 116/227 (51%), Gaps = 18/227 (7%)
Query: 48 GLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFG 107
GL E+ P GE A RL + L K V + P + T+ LSP+L FG
Sbjct: 201 GLQENWTP------GEAAAHGRLGQFL--KAAVSDYSDRRDLPG--QSGTSRLSPHLHFG 250
Query: 108 CLSVRLFYHELKKILATGPHAKP--PVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQ 165
+S R +H +K+ HA+ + L +I WREF Y + P+ +
Sbjct: 251 EISPRQVWHAVKQ----SDHARTGGADTYLSEIAWREFSYNLLYHFPDLPEANFQSKFDA 306
Query: 166 VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEG 225
+WD E L+AW G+TGYP +DA MR+L GW+H+ R VA FL + DL++ W G
Sbjct: 307 FEWDECEDKLKAWQKGQTGYPIVDAGMRELWATGWMHNRVRMIVASFLIK-DLFIHWRRG 365
Query: 226 QSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
+ F + L+DAD A NA +W W + S A +FRV++PV +K D
Sbjct: 366 EDWFWDTLVDADLASNAASWQWTAGSGADAAPYFRVFNPVGQSEKFD 412
>gi|47212597|emb|CAF93039.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 94/171 (54%), Gaps = 5/171 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEH----LVPTMKEMGLDESSIPL 56
+T+++ +++ L P+ + T + G D H +P+++E+G +
Sbjct: 184 LTFKRFQTIVSRLELPRRPLPSVTQQQMDKCGTPVADNHDQLYSIPSLEELGFRTGGLAP 243
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGE+EAL+RL K L K WV E SL S LSPYL+FGCLS R+FY+
Sbjct: 244 AVWRGGESEALERLRKHLEKKVWVSHLEHSRANTCSLYASPAGLSPYLRFGCLSCRVFYY 303
Query: 117 ELKK-ILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQV 166
L++ + PP+SL GQ+ WREF+Y ++ PNFD+M GN IC QV
Sbjct: 304 NLREHYIRLCKGCSPPLSLFGQLLWREFFYTAATNNPNFDRMAGNPICVQV 354
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/88 (56%), Positives = 58/88 (65%), Gaps = 21/88 (23%)
Query: 205 ARHAVACFLTRGDLYLSWEEGQ---------------------SVFEELLLDADWAMNAG 243
AR AVACFLTRGDL++SWE G VFEELLLDADW++NAG
Sbjct: 453 ARRAVACFLTRGDLWISWECGMKVGGAAWSRRRRRRLSARLLPQVFEELLLDADWSVNAG 512
Query: 244 NWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+WMWLS SAFF QFF+ Y PV FG++TD
Sbjct: 513 SWMWLSCSAFFQQFFKCYCPVGFGRRTD 540
>gi|229549977|ref|ZP_04438702.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29200]
gi|312951532|ref|ZP_07770428.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0102]
gi|384513279|ref|YP_005708372.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis OG1RF]
gi|422692986|ref|ZP_16751001.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0031]
gi|422727086|ref|ZP_16783529.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0312]
gi|430361362|ref|ZP_19426639.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis OG1X]
gi|430370639|ref|ZP_19429164.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis M7]
gi|229304890|gb|EEN70886.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29200]
gi|310630498|gb|EFQ13781.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0102]
gi|315152445|gb|EFT96461.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0031]
gi|315158111|gb|EFU02128.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0312]
gi|327535168|gb|AEA94002.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis OG1RF]
gi|429512539|gb|ELA02144.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis OG1X]
gi|429515403|gb|ELA04919.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis M7]
Length = 477
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 10/221 (4%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
+ IPL + GE A +RL + K ++ +E P + T+ LS +L+ G LS+
Sbjct: 189 ARIPLTHYSVGEETARRRLNTFIDQK--LQSYENKRDFP--YQDQTSHLSTFLRTGELSI 244
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R + EL A+ P + + ++ WR+FY ++ S P + + + W +
Sbjct: 245 RTIWQEL----ASMPSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWTND 300
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+ F++
Sbjct: 301 PEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEKYFQK 359
Query: 232 LLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 360 MLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 400
>gi|91774219|ref|YP_566911.1| deoxyribodipyrimidine photo-lyase type I [Methanococcoides burtonii
DSM 6242]
gi|91713234|gb|ABE53161.1| Deoxyribodipyrimidine photolyase [Methanococcoides burtonii DSM
6242]
Length = 467
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 100/178 (56%), Gaps = 8/178 (4%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
TT LS + K G +S+R FY+ + L G +L+ ++YWR+F+ + + P+
Sbjct: 237 GTTGLSAHNKLGTISIREFYYSVIDELGRGH------TLINELYWRDFFTQISFEFPDVF 290
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
K K + WD + + +AW GKTG+P +DA MR+L G++H+ R VA FL +
Sbjct: 291 KHAFKKKFDHLSWDNDRIFFDAWCLGKTGFPIVDAGMRELNTTGYMHNRVRMIVASFLVK 350
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDK 272
DL++ W+ G+ F L+D D +N GNW W +++ Q +FR+++P KK DK
Sbjct: 351 -DLHIDWKRGERYFASKLVDYDPCVNNGNWQWAASTGADSQPYFRIFNPWLQQKKFDK 407
>gi|330817717|ref|YP_004361422.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3]
gi|327370110|gb|AEA61466.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3]
Length = 487
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 123/254 (48%), Gaps = 18/254 (7%)
Query: 23 PTSLPRECQGILHPDEHLVPTMKE--MGLDESSIPLCKFPGGETEALKRLEKSLANKEWV 80
P SL R I L+PT + GL E+ +P E AL+ LE+ L K +
Sbjct: 181 PASLARRALKI--DALGLLPTRPDWAGGLREAWVPT------EEAALELLERFLDKK--I 230
Query: 81 RKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPP--VSLLGQI 138
R + + P+ P+T+ LSPYL+FG LS R +H G A + ++
Sbjct: 231 RGYGEARDRPD--RPATSRLSPYLRFGQLSARQVWHAAMAAAREGGAAVAADIEKFVSEL 288
Query: 139 YWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLE 198
WREF + P + + W +E AW G+TGYP +DA MR+L
Sbjct: 289 GWREFDTSLLYHFPELPTRNYRERFDAMPWRDDEAGFTAWCRGRTGYPLVDAGMRELWTT 348
Query: 199 GWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSA-SAFFHQF 257
GW+H+ R VA FL + L + W G+ F + L+DAD A N+ NW W++ A +
Sbjct: 349 GWMHNRVRMVVASFLIK-HLLIDWRAGERWFWDTLVDADIANNSANWQWVAGCGADAAPY 407
Query: 258 FRVYSPVAFGKKTD 271
FR+++PV G+K D
Sbjct: 408 FRIFNPVTQGRKFD 421
>gi|448583039|ref|ZP_21646508.1| deoxyribodipyrimidine photolyase [Haloferax gibbonsii ATCC 33959]
gi|445729996|gb|ELZ81588.1| deoxyribodipyrimidine photolyase [Haloferax gibbonsii ATCC 33959]
Length = 482
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 113/234 (48%), Gaps = 10/234 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+PTM ++G +E S + G A +RL A+ + ++ P +T+ L
Sbjct: 192 LPTMSDLGFEEPSAAVQS--AGTEAARERLSAFCADA--IYRYADDRDYPT--RDATSRL 245
Query: 101 SPYLKFGCLSVRLFYHELKKIL--ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMK 158
S LKFG + +R Y G + Q+ WREFY V + PN
Sbjct: 246 STDLKFGTIGIREVYAATAAAREGVGGERDESVEEFQSQLAWREFYAHVLREHPNVVTEN 305
Query: 159 GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
+ + W + + L AW GKTGYP +DA MRQLR E ++H+ R VA FLT+ DL
Sbjct: 306 YKEYENDIAWRDDAEELAAWKEGKTGYPIVDAGMRQLREEAYMHNRVRMIVASFLTK-DL 364
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
W G + F E L D D A + G W W +++ Q +FR+++P+ G++ D
Sbjct: 365 LCDWRHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYD 418
>gi|148657549|ref|YP_001277754.1| deoxyribodipyrimidine photolyase [Roseiflexus sp. RS-1]
gi|148569659|gb|ABQ91804.1| Deoxyribodipyrimidine photo-lyase type I [Roseiflexus sp. RS-1]
Length = 491
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 14/223 (6%)
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSL-EPSTTVLSPYLKFGCLSVRLFYH--- 116
GGET RL L + N L EP+T+ LSPYL+FGC++ R
Sbjct: 204 GGETTGAARLAAFL-DPRATHGIAGYADGRNLLAEPATSRLSPYLRFGCVAPRAALRAAL 262
Query: 117 -------ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWD 169
E + + + +G++ WR+FYY + P+ + ++W+
Sbjct: 263 NLLDRAGEEQDAECAATLTRSIETWIGELAWRDFYYQILWHHPHVLRSAFKPQYDALEWE 322
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
+ +AW G+TGYP +DA MRQL E W+H+ AR VA FLT+ DL + W G+ F
Sbjct: 323 NDPALFDAWKEGRTGYPVVDAAMRQLNREAWMHNRARMIVASFLTK-DLLIDWRWGERYF 381
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+ L+D D A N G W W + + Q +FR+++PV+ G+ D
Sbjct: 382 MQQLVDGDHAANNGGWQWSAGTGTDAQPYFRIFNPVSQGQTFD 424
>gi|255972759|ref|ZP_05423345.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T1]
gi|255963777|gb|EET96253.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T1]
Length = 473
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 10/221 (4%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
+ IPL + GE A +RL + K ++ +E P + T+ LS +L+ G LS+
Sbjct: 185 ARIPLTHYSVGEETARRRLNTFIDQK--LQSYENKRDFP--YQDQTSHLSTFLRTGELSI 240
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R + EL A+ P + + ++ WR+FY ++ S P + + + W +
Sbjct: 241 RTIWQEL----ASMPSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWTND 296
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+ F++
Sbjct: 297 PEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEKYFQK 355
Query: 232 LLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTD 271
+L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 356 MLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 396
>gi|227114750|ref|ZP_03828406.1| deoxyribodipyrimidine photolyase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 492
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 109/217 (50%), Gaps = 9/217 (4%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FP GE AL++L + +E V+ +++ P P T+ LSPYL G +S R ++ L
Sbjct: 206 FPSGERAALQQLRRFC--REQVQDYDQQRDFPAL--PGTSKLSPYLALGIVSPRQCFNRL 261
Query: 119 KKILATGPHAKP--PVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQ-VDWDTNEKYL 175
+ + + ++ WREFY + P K + Q V W + + L
Sbjct: 262 RAECPEMLERREGGAFTWFNELVWREFYRHLIVSWPQLCKHRPFTAWTQWVKWRESREDL 321
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
AW GKTGYP +DA MRQL GW+H+ R A FL + DL + W EG+ F LLD
Sbjct: 322 AAWQQGKTGYPIVDAAMRQLNETGWMHNRLRMICASFLVK-DLLIDWREGERYFMSQLLD 380
Query: 236 ADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D A N G W W +++ +FR+++P G++ D
Sbjct: 381 GDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFD 417
>gi|422016104|ref|ZP_16362694.1| deoxyribodipyrimidine photolyase [Providencia burhodogranariea DSM
19968]
gi|414095551|gb|EKT57213.1| deoxyribodipyrimidine photolyase [Providencia burhodogranariea DSM
19968]
Length = 481
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 114/220 (51%), Gaps = 15/220 (6%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FP GE AL+RL L +E + +++ P SL+ T+ LSPYL G LS R L
Sbjct: 204 FPSGEVAALQRLR--LFCRERAQDYQQNRDIP-SLD-GTSQLSPYLAVGVLSPR---QCL 256
Query: 119 KKILATGPHA-----KPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNE 172
++L PH + L ++ WREFY+ + P+ + + + + W++++
Sbjct: 257 NRLLTENPHTFDSPDSGSFTWLNELIWREFYHHLLVAFPHLCRHQPFIEWTKHIQWNSSD 316
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
AW +G TGYP +DA MRQL GW+H+ R A FL + DL + W G+ F +
Sbjct: 317 TDFNAWKNGLTGYPIVDAAMRQLNTTGWMHNRLRMITASFLVK-DLLIDWRRGEQYFIQQ 375
Query: 233 LLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
L+D A N G W W +++ +FR+++P GKK D
Sbjct: 376 LIDGTLAANNGGWQWSASTGIDASPWFRIFNPTTQGKKFD 415
>gi|422728872|ref|ZP_16785278.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0012]
gi|315150502|gb|EFT94518.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0012]
Length = 477
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 10/225 (4%)
Query: 48 GLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFG 107
G + IPL + GE A +RL + K ++ +E P + T+ LS +L+ G
Sbjct: 185 GEQIARIPLTHYSVGEETARRRLNTFIDQK--LQSYENNRDFP--YQDQTSHLSTFLRTG 240
Query: 108 CLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVD 167
LS+R EL A+ P + + ++ WR+FY ++ S P + + +
Sbjct: 241 ELSIRTIRQEL----ASAPSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQ 296
Query: 168 WDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQS 227
W + + W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+
Sbjct: 297 WTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEK 355
Query: 228 VFEELLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTD 271
F+++L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 356 YFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 400
>gi|409728146|ref|ZP_11271017.1| deoxyribodipyrimidine photolyase [Halococcus hamelinensis 100A6]
gi|448723116|ref|ZP_21705641.1| deoxyribodipyrimidine photolyase [Halococcus hamelinensis 100A6]
gi|445788071|gb|EMA38793.1| deoxyribodipyrimidine photolyase [Halococcus hamelinensis 100A6]
Length = 466
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 124/255 (48%), Gaps = 17/255 (6%)
Query: 24 TSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALK-RLEK--SLANKEWV 80
+S P L + +PT ++G DE P P TEA + RL+ A E+
Sbjct: 156 SSYPPPNGDALRAGDDDLPTSDDLGFDE---PDATLPEAGTEAARDRLDSFCEAAIGEYE 212
Query: 81 RKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKIL--ATGPHAKPPV-SLLGQ 137
+ E P A T+ LS LK+G + +R + + A G + + + +
Sbjct: 213 TEREYPARA------GTSRLSQDLKYGTIGIREVSERVAEAADRADGDDVRESIETYREE 266
Query: 138 IYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRL 197
+ WREFY V P + ++W ++ L+AW G+TGYP +DA MRQL
Sbjct: 267 LAWREFYTQVLRYNPEVVTENYSSYENPIEWRESDDDLDAWKDGETGYPIVDAGMRQLHE 326
Query: 198 EGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ- 256
E +IH+ R VA FLT+ DL L W G F ELL+D D A + G W W +++ Q
Sbjct: 327 EAYIHNRVRMIVAAFLTK-DLLLDWRAGYDHFRELLVDHDTANDNGGWQWAASTGTDAQP 385
Query: 257 FFRVYSPVAFGKKTD 271
+FRV++P+ G++ D
Sbjct: 386 YFRVFNPMTQGERYD 400
>gi|310831104|ref|YP_003969747.1| putative CPD class I photolyase [Cafeteria roenbergensis virus
BV-PW1]
gi|309386288|gb|ADO67148.1| putative CPD class I photolyase [Cafeteria roenbergensis virus
BV-PW1]
Length = 474
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 110/220 (50%), Gaps = 22/220 (10%)
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKK 120
GG AL +L+K KE+ K N+L TT LS Y+KFGC+S+R +++ KK
Sbjct: 208 GGRKNALLQLKKIKNQKEYSIK-------RNNLMYETTHLSAYIKFGCISIREVFYKFKK 260
Query: 121 ILATGPHAKPPVSLLGQIYWREFY--------YVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L K +L Q++WREFY YV+ N + + W N+
Sbjct: 261 YL------KDNNTLYSQLFWREFYTYITHYYQYVLQGQISNKVNLDFQEKYGNFKWSNNK 314
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+L W G+TG+P +DA +++L G++H+ +R + FL + L + W EG+ F +
Sbjct: 315 TFLNKWKKGETGFPIVDAGIKELLTTGYMHNRSRLLTSAFLIKLCL-IDWREGEKYFAQK 373
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
L D D A N G W + A +FR+ SP++ + DK
Sbjct: 374 LTDYDPAQNNGGWQFHHGGASNADYFRIISPISQANRFDK 413
>gi|228953466|ref|ZP_04115511.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|423425266|ref|ZP_17402297.1| hypothetical protein IE5_02955 [Bacillus cereus BAG3X2-2]
gi|423506140|ref|ZP_17482730.1| hypothetical protein IG1_03704 [Bacillus cereus HD73]
gi|449089482|ref|YP_007421923.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228806205|gb|EEM52779.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|401112481|gb|EJQ20359.1| hypothetical protein IE5_02955 [Bacillus cereus BAG3X2-2]
gi|402449071|gb|EJV80909.1| hypothetical protein IG1_03704 [Bacillus cereus HD73]
gi|449023239|gb|AGE78402.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 476
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 99/179 (55%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L +H L + K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQSSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|89073732|ref|ZP_01160246.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
gi|89050507|gb|EAR55999.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
Length = 489
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 96/180 (53%), Gaps = 6/180 (3%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKP---PVSLLGQIYWREFYYVVGSDTPN 153
T+ LSPYL G LS R H+L++ + L +I WREFY + P
Sbjct: 247 TSCLSPYLAIGALSARQCLHQLQQYFPNAFEINKDDGAFTWLNEIVWREFYGHLLHRYPE 306
Query: 154 FDKMKGNKICCQ-VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
K + + Q V W +E L+AW GKTG+P +DA MRQLR GW+H+ R A F
Sbjct: 307 LSKHQPFQKFTQFVKWKDDEALLKAWQEGKTGFPIVDAGMRQLRATGWMHNRLRMITASF 366
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
LT+ DL W G+ F + L+D D++ N G W W +++ Q +FRV++P G++ D
Sbjct: 367 LTK-DLLCDWRVGEQWFMQHLIDGDFSSNNGGWQWAASTGTDAQPYFRVFNPTLQGQRFD 425
>gi|146303224|ref|YP_001190540.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera sedula DSM
5348]
gi|145701474|gb|ABP94616.1| deoxyribodipyrimidine photo-lyase type I [Metallosphaera sedula DSM
5348]
Length = 435
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 111/214 (51%), Gaps = 24/214 (11%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
PGG E LKRLE++ +R F P TT LSPY+KFG +S R Y +
Sbjct: 182 IPGGRQEGLKRLERARNLNYSMRNF--PGVE------GTTKLSPYIKFGVVSPREVYWAV 233
Query: 119 KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPN-FDKMKGNKICCQVDWDTNEKYLEA 177
+ + Q+YWR+FY ++ P+ F + C + W NE +LEA
Sbjct: 234 NE------------EIRRQLYWRDFYTLLAYYNPHVFGHSYKREYDC-IPWKWNEAHLEA 280
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W GKTGYP +DA MR+L G++H+ R A FL + L++ W G+ F L+D D
Sbjct: 281 WKQGKTGYPIVDAGMRELNETGFMHNRTRMITASFLVKV-LHVDWRIGERYFATKLVDYD 339
Query: 238 WAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++N GNW W++++ + FRV++P +K D
Sbjct: 340 PSVNNGNWQWVASTGADY-MFRVFNPWLQQRKFD 372
>gi|228934418|ref|ZP_04097254.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228825271|gb|EEM71067.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 476
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L YH L + K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ R AVA FL
Sbjct: 292 AYKPLNKSFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLI 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|228915743|ref|ZP_04079325.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228843918|gb|EEM88985.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 476
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 121/238 (50%), Gaps = 14/238 (5%)
Query: 39 HLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTT 98
HL+PT+ ES + E A K +K ++K + + + PN + + +
Sbjct: 182 HLLPTIPWTSHMESI-----WEPTEEGAYKTFKKFFSSK--LVSYSEGRDFPN--QNAHS 232
Query: 99 VLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+L+PYL FG +SV+L YH L + S + Q WREF Y + P
Sbjct: 233 MLAPYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYPFTV 292
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL +
Sbjct: 293 NKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 353 -HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|408682677|ref|YP_006882504.1| Deoxyribodipyrimidine photolyase [Streptomyces venezuelae ATCC
10712]
gi|328887006|emb|CCA60245.1| Deoxyribodipyrimidine photolyase [Streptomyces venezuelae ATCC
10712]
Length = 457
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 106/214 (49%), Gaps = 15/214 (7%)
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKK 120
GGE E KRL LA E V +E+ + + +T+ LSPYL FG +S H +
Sbjct: 198 GGEQEGRKRLAAWLA--EDVDTYEERHD--DLAGDATSRLSPYLHFGAVSAAEAVHRARS 253
Query: 121 ILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN---EKYLEA 177
G A + Q+ WR+F++ V + P D + W E L A
Sbjct: 254 RGGAGAEA-----FVRQLCWRDFHHQVLAARP--DAASDDYRTRHDRWRRGTEAEADLRA 306
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W G+TGYP +DA MRQL EGW+H+ R A FLT+ LY+ W EG F ELL+D D
Sbjct: 307 WREGRTGYPVVDAAMRQLAHEGWMHNRGRLLTASFLTK-TLYIDWREGARHFLELLVDGD 365
Query: 238 WAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
A N NW W++ + + RV +PV K+ D
Sbjct: 366 LANNQLNWQWMAGTGTDSRPNRVLNPVTQAKRYD 399
>gi|425452606|ref|ZP_18832423.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 7941]
gi|389765542|emb|CCI08602.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 7941]
Length = 474
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 12/235 (5%)
Query: 41 VPTMKEMGLD-ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTV 99
+PT++ +G ++ +PL GE AL RLE+ + +++ P T+
Sbjct: 187 LPTLENLGFTWQNPLPLTP---GEKAALSRLEEFCQGV--INNYQEDRNFPAF--DGTSR 239
Query: 100 LSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFDK 156
LS LKFG + +R + ++L + S++ ++ WREFY P
Sbjct: 240 LSAALKFGTIGIRTIWTATLELLENCRAEEAKNSIITWQQELAWREFYQHCLYFFPELAV 299
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K W NE++ +AW GKTGYP +DA MRQL GW+H+ R VA FLT+
Sbjct: 300 GAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTK- 358
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DL ++W++G+ F + L D D A N G W W ++S + R+++P + +K D
Sbjct: 359 DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQTQKFD 413
>gi|218904303|ref|YP_002452137.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH820]
gi|218535120|gb|ACK87518.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH820]
Length = 476
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 97/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L YH L + K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ E+ L W G TGYPFIDA MR+L G++H+ R AVA FL
Sbjct: 292 AYKPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|388599361|ref|ZP_10157757.1| deoxyribodipyrimidine photolyase [Vibrio campbellii DS40M4]
Length = 471
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 99/180 (55%), Gaps = 9/180 (5%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAK---PPVSLLGQIYWREFYYVVGSDTPN 153
T+ LSPYL G LS R + ++ A PH + L +I WREFY + P
Sbjct: 238 TSQLSPYLAIGALSPR---QCIARLYAENPHTDLTDGKATWLSEIIWREFYQHLLVFEPK 294
Query: 154 FDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
K KG +++W +E E W G TGYP +DA MRQL GW+H+ R VA F
Sbjct: 295 LVKGKGFIPWEDKIEWSYDEAAFERWKTGTTGYPIVDAAMRQLNTTGWMHNRLRMIVASF 354
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
LT+ DL++ W G++ F L+D D+A N G W W +++ Q +FR+++P++ G+K D
Sbjct: 355 LTK-DLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFD 413
>gi|433589886|ref|YP_007279382.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
gi|448333098|ref|ZP_21522312.1| DNA photolyase FAD-binding protein [Natrinema pellirubrum DSM
15624]
gi|433304666|gb|AGB30478.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
gi|445623982|gb|ELY77377.1| DNA photolyase FAD-binding protein [Natrinema pellirubrum DSM
15624]
Length = 463
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 3/178 (1%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKIL--ATGPHAKPPVSLLGQIYWREFYYVVGSDTPN 153
+ + LSPYL G + +R + + + G + ++ WRE YY + + TP+
Sbjct: 220 AVSRLSPYLAAGAIGIREVWETVTDVRDGVDGDERRNVDKYAFELTWRELYYHLLAHTPD 279
Query: 154 FDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
+ ++ W +E AW G+TGYP +DA MRQL EG+IH+ R VA FL
Sbjct: 280 LATANYKQFPNEIAWRNDEAEFRAWKRGETGYPLVDAGMRQLDREGYIHNRPRQVVASFL 339
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
T+ L + W G + F E L+D D A+N GNW W++++ R++ PVA K D
Sbjct: 340 TKH-LLIDWRRGAAHFRERLVDHDPAVNPGNWQWVASTGTDSVDVRIFDPVAQAAKYD 396
>gi|196037804|ref|ZP_03105114.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99]
gi|196031074|gb|EDX69671.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99]
Length = 476
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 97/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L YH L + K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ E+ L W G TGYPFIDA MR+L G++H+ R AVA FL
Sbjct: 292 AYKPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|196032015|ref|ZP_03099429.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W]
gi|228928215|ref|ZP_04091256.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228946776|ref|ZP_04109081.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229122697|ref|ZP_04251907.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201]
gi|195994766|gb|EDX58720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W]
gi|228660748|gb|EEL16378.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201]
gi|228812900|gb|EEM59216.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228831262|gb|EEM76858.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 476
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 97/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L YH L + K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ E+ L W G TGYPFIDA MR+L G++H+ R AVA FL
Sbjct: 292 AYKPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|441518362|ref|ZP_21000085.1| deoxyribodipyrimidine photo-lyase [Gordonia hirsuta DSM 44140 =
NBRC 16056]
gi|441454765|dbj|GAC58046.1| deoxyribodipyrimidine photo-lyase [Gordonia hirsuta DSM 44140 =
NBRC 16056]
Length = 470
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 125/264 (47%), Gaps = 24/264 (9%)
Query: 16 PKPADDAPTSL----PRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLE 71
P+PAD P SL P G L D EM L ES++ + P GE A R
Sbjct: 160 PRPADTGPDSLAWLDPAGFDGRLELD-----LAAEM-LGESTVDIPVPPAGEAAARARW- 212
Query: 72 KSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPP 131
S+ + + + T+ LSPYLKFGCL R +L+ T P A+
Sbjct: 213 -SVFRDDDLLGYHDDRD--RPDLDRTSRLSPYLKFGCLHPRTVLADLRG--RTDPGAE-- 265
Query: 132 VSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN---EKYLEAWSHGKTGYPFI 188
S ++ WR+FY V P + + +++DT ++ AW G+TGYP +
Sbjct: 266 -SWRSELAWRDFYADVLHHRPETARGNADTKFDALEYDTGPAADEAFAAWCSGRTGYPIV 324
Query: 189 DAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWL 248
DA MRQLR +GW+H+ R A FLT+ DL+L W G F L+D D N W W
Sbjct: 325 DAGMRQLRAQGWMHNRVRMITASFLTK-DLHLPWWRGARYFMTQLVDGDLPSNQHGWQWT 383
Query: 249 SASAF-FHQFFRVYSPVAFGKKTD 271
+ S +FRV++P A G++ D
Sbjct: 384 AGSGTDAAPYFRVFNPTAQGERFD 407
>gi|156976349|ref|YP_001447255.1| deoxyribodipyrimidine photolyase [Vibrio harveyi ATCC BAA-1116]
gi|156527943|gb|ABU73028.1| hypothetical protein VIBHAR_05122 [Vibrio harveyi ATCC BAA-1116]
Length = 471
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 99/180 (55%), Gaps = 9/180 (5%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAK---PPVSLLGQIYWREFYYVVGSDTPN 153
T+ LSPYL G LS R + ++ A PH + L +I WREFY + P
Sbjct: 238 TSQLSPYLAIGALSPR---QCIARLYAENPHTDLTDGKATWLSEIIWREFYQHLLVFEPK 294
Query: 154 FDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
K KG +++W +E E W G TGYP +DA MRQL GW+H+ R VA F
Sbjct: 295 LVKGKGFIPWEDKIEWSYDEAAFERWKTGTTGYPIVDAAMRQLNTTGWMHNRLRMIVASF 354
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
LT+ DL++ W G++ F L+D D+A N G W W +++ Q +FR+++P++ G+K D
Sbjct: 355 LTK-DLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFD 413
>gi|254247729|ref|ZP_04941050.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia PC184]
gi|124872505|gb|EAY64221.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia PC184]
Length = 531
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 112/215 (52%), Gaps = 14/215 (6%)
Query: 63 ETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKIL 122
E AL RL+ L + + P+ P+T+ LSP+L+FG +S R +H ++
Sbjct: 257 EAGALARLDTFLTTS--LAGYADARDRPD--RPATSRLSPFLRFGNVSPRQVWHAVQGAA 312
Query: 123 ATGP--HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVD---WDTNEKYLEA 177
G +A L ++ WREF Y + +F + + Q D W + L A
Sbjct: 313 NAGGAVYAAHADKFLSELGWREFSYTL---LYHFPALATDNFRAQFDAMPWRDDPAALRA 369
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W G+TGYP +DA +R+L GW+H+ R VA FL + L + W G++ F + L+DAD
Sbjct: 370 WQRGRTGYPLVDAGLRELWTTGWMHNRVRMVVASFLIK-HLLIDWRAGEAWFRDTLVDAD 428
Query: 238 WAMNAGNWMWLSA-SAFFHQFFRVYSPVAFGKKTD 271
A NA +W W++ A +FR+++PVA G+K D
Sbjct: 429 PANNAASWQWVAGCGADAAPYFRIFNPVAQGQKCD 463
>gi|390945121|ref|YP_006408882.1| deoxyribodipyrimidine photolyase [Belliella baltica DSM 15883]
gi|390418549|gb|AFL86127.1| deoxyribodipyrimidine photolyase [Belliella baltica DSM 15883]
Length = 433
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 129/261 (49%), Gaps = 27/261 (10%)
Query: 13 LPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEK 72
L K K + +P SL + L D +P++ +MG ++S++ K P E
Sbjct: 158 LDKFKKSKLSPLSLDGRKRNFLKIDALPIPSLVDMGFEKSNL---KIPALEI-------- 206
Query: 73 SLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPV 132
NK ++K+++ P TT L +L+FG +SVR E ++ T
Sbjct: 207 ---NKPLIKKYDQVRNFPAI--NGTTRLGIHLRFGTVSVRKLALEAAQLNDT-------- 253
Query: 133 SLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIM 192
L ++ WREFY ++ + P Q+ W +E+ + W GKTGYP +DA M
Sbjct: 254 -YLNELIWREFYMMILAHNPQVTDKAFKPQYDQIPWRNSEEDFQKWCDGKTGYPIVDAGM 312
Query: 193 RQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASA 252
R+L G++H+ R VA FLT+ L L W+ G++ F + LLD + + N G W W + +
Sbjct: 313 RELNATGYMHNRVRMIVASFLTKH-LLLDWKWGEAYFAKKLLDFELSSNNGGWQWAAGTG 371
Query: 253 FFHQ-FFRVYSPVAFGKKTDK 272
Q +FRV++P + +K DK
Sbjct: 372 TDAQPYFRVFNPESQTEKFDK 392
>gi|153831640|ref|ZP_01984307.1| deoxyribodipyrimidine photo-lyase [Vibrio harveyi HY01]
gi|148872150|gb|EDL70967.1| deoxyribodipyrimidine photo-lyase [Vibrio harveyi HY01]
Length = 471
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 99/180 (55%), Gaps = 9/180 (5%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAK---PPVSLLGQIYWREFYYVVGSDTPN 153
T+ LSPYL G LS R + ++ A PH + L +I WREFY + P
Sbjct: 238 TSQLSPYLAIGALSPR---QCIARLYAENPHTDLTDGKATWLSEIIWREFYQHLLVFEPK 294
Query: 154 FDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
K KG +++W +E E W G TGYP +DA MRQL GW+H+ R VA F
Sbjct: 295 LVKGKGFIPWEDKIEWSYDEAAFERWKTGTTGYPIVDAAMRQLNATGWMHNRLRMIVASF 354
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
LT+ DL++ W G++ F L+D D+A N G W W +++ Q +FR+++P++ G+K D
Sbjct: 355 LTK-DLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFD 413
>gi|49185961|ref|YP_029213.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Sterne]
gi|65320437|ref|ZP_00393396.1| COG0415: Deoxyribodipyrimidine photolyase [Bacillus anthracis str.
A2012]
gi|165868433|ref|ZP_02213093.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0488]
gi|167631730|ref|ZP_02390057.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0442]
gi|167637299|ref|ZP_02395579.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0193]
gi|170684891|ref|ZP_02876116.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0465]
gi|177649852|ref|ZP_02932853.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0174]
gi|190564773|ref|ZP_03017694.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Tsiankovskii-I]
gi|227814024|ref|YP_002814033.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. CDC 684]
gi|229603798|ref|YP_002867382.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0248]
gi|254685712|ref|ZP_05149571.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. CNEVA-9066]
gi|254723122|ref|ZP_05184910.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A1055]
gi|254738183|ref|ZP_05195886.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Western North America USA6153]
gi|254742647|ref|ZP_05200332.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Kruger B]
gi|254752497|ref|ZP_05204533.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Vollum]
gi|254761013|ref|ZP_05213037.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Australia 94]
gi|270000553|ref|NP_845490.2| deoxyribodipyrimidine photolyase [Bacillus anthracis str. Ames]
gi|386736907|ref|YP_006210088.1| Deoxyribodipyrimidine photolyase [Bacillus anthracis str. H9401]
gi|421510721|ref|ZP_15957609.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. UR-1]
gi|421636758|ref|ZP_16077356.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. BF1]
gi|49179888|gb|AAT55264.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Sterne]
gi|164715159|gb|EDR20676.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0488]
gi|167514806|gb|EDR90172.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0193]
gi|167532028|gb|EDR94664.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0442]
gi|170671151|gb|EDT21889.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0465]
gi|172083804|gb|EDT68863.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0174]
gi|190564090|gb|EDV18054.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Tsiankovskii-I]
gi|227005678|gb|ACP15421.1| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. CDC 684]
gi|229268206|gb|ACQ49843.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0248]
gi|269850227|gb|AAP26976.2| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. Ames]
gi|384386759|gb|AFH84420.1| Deoxyribodipyrimidine photolyase [Bacillus anthracis str. H9401]
gi|401819244|gb|EJT18426.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. UR-1]
gi|403395554|gb|EJY92792.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. BF1]
Length = 476
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 97/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L YH L + K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ E+ L W G TGYPFIDA MR+L G++H+ R AVA FL
Sbjct: 292 AYKPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|47528471|ref|YP_019820.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. 'Ames
Ancestor']
gi|47503619|gb|AAT32295.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. 'Ames Ancestor']
Length = 469
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 97/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L YH L + K S + Q+ WREF Y + P
Sbjct: 225 SMLAPYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 284
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ E+ L W G TGYPFIDA MR+L G++H+ R AVA FL
Sbjct: 285 AYKPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 344
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 345 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 402
>gi|392397553|ref|YP_006434154.1| deoxyribodipyrimidine photolyase [Flexibacter litoralis DSM 6794]
gi|390528631|gb|AFM04361.1| deoxyribodipyrimidine photolyase [Flexibacter litoralis DSM 6794]
Length = 452
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 113/235 (48%), Gaps = 32/235 (13%)
Query: 42 PTMKEMGLDESS---IPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTT 98
PT+KE+G +E+ IP FP KE ++ +E+ P + T+
Sbjct: 201 PTLKEIGFEENQNPHIPSTDFP----------------KEIIKNYEETRDFP--AKEGTS 242
Query: 99 VLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMK 158
LSP+L+FG +S+R LA + K ++ WREFY + P
Sbjct: 243 RLSPHLRFGTISIRKL-----ATLAKETNEK----YFNELIWREFYMTILYHYPKVVNNA 293
Query: 159 GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
++ W NE E W GKTGYP +DA MRQL G++H+ R VA FLT+ L
Sbjct: 294 FRSNYDKIPWRNNETEFEKWCQGKTGYPLVDAGMRQLNETGFMHNRVRMVVASFLTKH-L 352
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDK 272
+ W G++ F + LLD + A N G W W + S +FRV++P + KK DK
Sbjct: 353 LIDWRWGEAYFAKKLLDYELASNNGGWQWAAGSGVDAAPYFRVFNPESQLKKFDK 407
>gi|49478047|ref|YP_037258.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49329603|gb|AAT60249.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 476
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 97/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L YH L + K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ E+ L W G TGYPFIDA MR+L G++H+ R AVA FL
Sbjct: 292 AYKPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|330830812|ref|YP_004393764.1| deoxyribodipyrimidine photolyase [Aeromonas veronii B565]
gi|423208514|ref|ZP_17195068.1| hypothetical protein HMPREF1169_00586 [Aeromonas veronii AER397]
gi|328805948|gb|AEB51147.1| Deoxyribodipyrimidine photolyase [Aeromonas veronii B565]
gi|404618359|gb|EKB15279.1| hypothetical protein HMPREF1169_00586 [Aeromonas veronii AER397]
Length = 473
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 112/222 (50%), Gaps = 17/222 (7%)
Query: 58 KFPGGETEALKRL----EKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRL 113
++P GE EAL+RL E+++ + R F P A T+VLSPYL G +S R
Sbjct: 202 RWPVGEAEALRRLNIFLEQAVLDYGETRDF--PAIA------GTSVLSPYLAAGIISPRQ 253
Query: 114 FYHELKKILATGPHAK--PPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKI-CCQVDWDT 170
L++ L P +K P L ++ WREFY + P + K + W
Sbjct: 254 CVAVLQQRLGYRPQSKAQPGFVWLNELIWREFYRHLLVLIPALSMNRPFKPETAALPWSW 313
Query: 171 NEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFE 230
+ AW G+TGYP +DA MR L GW+H+ R VA FLT+ DL++ W G+ F
Sbjct: 314 DPDAFAAWCEGRTGYPIVDAAMRCLNTTGWMHNRLRMIVASFLTK-DLHIHWRLGEDYFM 372
Query: 231 ELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
L+D D A N G W W + + A +FRV++P G++ D
Sbjct: 373 SRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFD 414
>gi|229156755|ref|ZP_04284842.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342]
gi|228626675|gb|EEK83415.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342]
Length = 476
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 99/183 (54%), Gaps = 5/183 (2%)
Query: 94 EPSTTVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSD 150
E + ++L+PYL FG +SVR YH L K S + Q+ WREF Y +
Sbjct: 228 ENAHSMLAPYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYH 287
Query: 151 TPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVA 210
P NK W+ E+ L W G+TGYPFIDA MR+L G++H+ AR AVA
Sbjct: 288 YPFTVYKPLNKNFEHFPWNKEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVA 347
Query: 211 CFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKK 269
FL + L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K
Sbjct: 348 SFLVK-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEK 406
Query: 270 TDK 272
DK
Sbjct: 407 FDK 409
>gi|70732464|ref|YP_262226.1| deoxyribodipyrimidine photolyase [Pseudomonas protegens Pf-5]
gi|68346763|gb|AAY94369.1| deoxyribodipyrimidine photolyase [Pseudomonas protegens Pf-5]
Length = 481
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 134/280 (47%), Gaps = 30/280 (10%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTS-----LPRECQGILHPDEHLVPTMKEMGLDESSIP 55
+ Y +L + L +L K P P S LP+ +G P + ++E+
Sbjct: 155 VCYSRLHTALPALVK-APGAQLPLSINADPLPQRVEGFPSPTQ----ALREL-------- 201
Query: 56 LCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY 115
+P G+ EA +RLEK + E + ++ P +P T+ LSPYL G +S R
Sbjct: 202 ---WPAGDDEAQRRLEK--FSDEQIHYYQSERDFPA--KPGTSQLSPYLAAGVISPRQCL 254
Query: 116 HE-LKKILATGPHAKP-PVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQ-VDWDTNE 172
H L+ P V+ + ++ WREFY + P + + + + V W
Sbjct: 255 HAALRGNQGEFESGSPGAVTWINELLWREFYKHILVGYPRVSRHRAFRPETEAVKWRHAP 314
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L AW +TG P IDA MRQL GW+H+ R VA FLT+ +L + W EG+ F
Sbjct: 315 EELAAWQEARTGLPIIDAAMRQLLETGWMHNRLRMVVAMFLTK-NLLIDWREGERFFMRH 373
Query: 233 LLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L+D D A N G W W S++ +FR+++P++ +K D
Sbjct: 374 LIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPISQSQKFD 413
>gi|423202670|ref|ZP_17189249.1| hypothetical protein HMPREF1167_02832 [Aeromonas veronii AER39]
gi|404614866|gb|EKB11845.1| hypothetical protein HMPREF1167_02832 [Aeromonas veronii AER39]
Length = 473
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 111/221 (50%), Gaps = 17/221 (7%)
Query: 59 FPGGETEALKRL----EKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
+P GE EAL+RL E+++ + R F P A T+VLSPYL G +S R
Sbjct: 203 WPVGEAEALRRLNIFLEQAVLDYGETRDF--PAIA------GTSVLSPYLAAGIISPRQC 254
Query: 115 YHELKKILATGPH--AKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKI-CCQVDWDTN 171
L++ L P A+P L ++ WREFY + P + K + W +
Sbjct: 255 VAALQQRLGYRPQSKAQPGFVWLNELIWREFYRHLLVLIPTLSMNRPFKPETAALPWSWD 314
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
AW G+TGYP +DA MR L GW+H+ R VA FLT+ DL++ W G+ F
Sbjct: 315 PDAFAAWCEGRTGYPIVDAAMRCLNATGWMHNRLRMIVASFLTK-DLHIHWRLGEDYFMS 373
Query: 232 LLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
L+D D A N G W W + + A +FRV++P G++ D
Sbjct: 374 RLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFD 414
>gi|107028642|ref|YP_625737.1| deoxyribodipyrimidine photolyase [Burkholderia cenocepacia AU 1054]
gi|116690199|ref|YP_835822.1| deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia HI2424]
gi|105897806|gb|ABF80764.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia cenocepacia
AU 1054]
gi|116648288|gb|ABK08929.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia cenocepacia
HI2424]
Length = 519
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 112/215 (52%), Gaps = 14/215 (6%)
Query: 63 ETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKIL 122
E AL RL+ L + + P+ P+T+ LSP+L+FG +S R +H ++
Sbjct: 245 EAGALARLDTFLTTS--LAGYADARDRPD--RPATSRLSPFLRFGNVSPRQVWHAVQGAA 300
Query: 123 ATGP--HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVD---WDTNEKYLEA 177
G +A L ++ WREF Y + +F + + Q D W + L A
Sbjct: 301 NAGGAVYAAHADKFLSELGWREFSYTL---LYHFPALATDNFRAQFDAMPWRDDPAALRA 357
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W G+TGYP +DA +R+L GW+H+ R VA FL + L + W G++ F + L+DAD
Sbjct: 358 WQRGRTGYPLVDAGLRELWTTGWMHNRVRMVVASFLIK-HLLIDWRAGEAWFRDTLVDAD 416
Query: 238 WAMNAGNWMWLSA-SAFFHQFFRVYSPVAFGKKTD 271
A NA +W W++ A +FR+++PVA G+K D
Sbjct: 417 PANNAASWQWVAGCGADAAPYFRIFNPVAQGQKCD 451
>gi|227327531|ref|ZP_03831555.1| deoxyribodipyrimidine photolyase [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 492
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 109/217 (50%), Gaps = 9/217 (4%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FP GE AL++L + +E V+ +++ P P T+ LSPYL G +S R ++ L
Sbjct: 206 FPRGERAALQQLRRFC--REQVQDYDQQRDFPAL--PGTSKLSPYLALGIVSPRQCFNRL 261
Query: 119 KKILATGPHAKP--PVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQ-VDWDTNEKYL 175
+ + + ++ WREFY + P K + Q V W + K L
Sbjct: 262 RAECPDMLERREGGAFTWFNELVWREFYRHLIVSWPQLCKHRPFTAWTQWVKWRESPKDL 321
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
AW G+TGYP +DA MRQL GW+H+ R A FL + DL + W EG+ F LLD
Sbjct: 322 AAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMICASFLVK-DLLIDWREGERYFMSQLLD 380
Query: 236 ADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D A N G W W +++ +FR+++P G++ D
Sbjct: 381 GDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFD 417
>gi|217960578|ref|YP_002339142.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH187]
gi|229139780|ref|ZP_04268347.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26]
gi|423352873|ref|ZP_17330500.1| hypothetical protein IAU_00949 [Bacillus cereus IS075]
gi|423373016|ref|ZP_17350356.1| hypothetical protein IC5_02072 [Bacillus cereus AND1407]
gi|423567933|ref|ZP_17544180.1| hypothetical protein II7_01156 [Bacillus cereus MSX-A12]
gi|217063006|gb|ACJ77256.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH187]
gi|228643660|gb|EEK99924.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26]
gi|401090879|gb|EJP99030.1| hypothetical protein IAU_00949 [Bacillus cereus IS075]
gi|401097348|gb|EJQ05371.1| hypothetical protein IC5_02072 [Bacillus cereus AND1407]
gi|401211272|gb|EJR18020.1| hypothetical protein II7_01156 [Bacillus cereus MSX-A12]
Length = 476
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 97/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L YH L + S + Q WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLMYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ +K L W GKTGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKSFEYFPWNNEKKLLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|453362943|dbj|GAC81211.1| deoxyribodipyrimidine photo-lyase [Gordonia malaquae NBRC 108250]
Length = 442
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 109/218 (50%), Gaps = 18/218 (8%)
Query: 60 PGGETEALKRLEKSLANK--EWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHE 117
P GET AL R L + ++ ++P+ T+ LS YLK GCL R H+
Sbjct: 182 PAGETAALDRWHDFLTDDLADYGTNRDRPDLD------RTSRLSAYLKTGCLHPRTLLHD 235
Query: 118 LKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN---EKY 174
++ G ++ WREFY V P+ ++ N+ ++ DT ++
Sbjct: 236 MRSRTDDGA-----AKFRSELCWREFYADVLHHRPDSAYIEFNEKFRRMPHDTGSDAQEA 290
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
AW G+TGYP +DA MRQL EGW+H+ R VA FLT+ DL+L W+ G F + L+
Sbjct: 291 FRAWCEGRTGYPIVDAGMRQLAAEGWMHNRVRMIVASFLTK-DLHLPWQWGARHFMDFLI 349
Query: 235 DADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D D A N W W++ +FRV++P G+K D
Sbjct: 350 DGDLASNQHGWQWVAGCGTDASPYFRVFNPTTQGEKFD 387
>gi|75763261|ref|ZP_00743014.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74489251|gb|EAO52714.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 478
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 121/238 (50%), Gaps = 14/238 (5%)
Query: 39 HLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTT 98
HL+PT+ ES + E A K +K ++K + + + PN + + +
Sbjct: 184 HLLPTIPWTSHIESI-----WEPTEEGAYKTFKKFFSSK--LASYSEGRDFPN--QNAHS 234
Query: 99 VLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+L+PYL FG +SV+L YH L K S + Q+ WREF Y + P
Sbjct: 235 MLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTV 294
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ R AVA FL +
Sbjct: 295 YKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLVK 354
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 355 -HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 411
>gi|257419331|ref|ZP_05596325.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T11]
gi|257161159|gb|EEU91119.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T11]
Length = 477
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 10/225 (4%)
Query: 48 GLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFG 107
G + IPL + GE A +RL + K ++ +E P + T+ LS +L+ G
Sbjct: 185 GEQIARIPLTHYSVGEETARRRLNTFIDQK--LQSYENKRDFP--YQDQTSHLSTFLRTG 240
Query: 108 CLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVD 167
LS+R + EL A+ P + + ++ WR+FY ++ S P + + +
Sbjct: 241 ELSIRTIWQEL----ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQ 296
Query: 168 WDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQS 227
W + + W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+
Sbjct: 297 WTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEK 355
Query: 228 VFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
F+++L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 356 YFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 400
>gi|345010228|ref|YP_004812582.1| FAD-binding DNA photolyase [Streptomyces violaceusniger Tu 4113]
gi|344036577|gb|AEM82302.1| FAD-binding DNA photolyase [Streptomyces violaceusniger Tu 4113]
Length = 454
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 97/180 (53%), Gaps = 16/180 (8%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+T+ LSPYL FGCLS H +K G A + Q+ WR+F++ V + P+
Sbjct: 231 ATSRLSPYLHFGCLSPVELVHRARKAGGAGADA-----FVRQLAWRDFHHQVLAARPDAA 285
Query: 156 ----KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVAC 211
+ +G++ W +E + AW G+TGYP +DA MRQLR EGW+H+ AR VA
Sbjct: 286 HADYRPRGDR------WRHDEAEIAAWKAGRTGYPLVDAGMRQLRHEGWMHNRARLLVAG 339
Query: 212 FLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
FLT+ LY W G F +LL+D D A N NW W + + + RV +P+ ++ D
Sbjct: 340 FLTK-TLYQDWRIGARHFLDLLVDGDLANNQLNWQWAAGTGTDTRPNRVLNPLTQARRFD 398
>gi|431797441|ref|YP_007224345.1| deoxyribodipyrimidine photolyase [Echinicola vietnamensis DSM
17526]
gi|430788206|gb|AGA78335.1| deoxyribodipyrimidine photolyase [Echinicola vietnamensis DSM
17526]
Length = 431
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 122/251 (48%), Gaps = 27/251 (10%)
Query: 23 PTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRK 82
PT L + + + P+++ +G DE++I FP + + K +R+
Sbjct: 166 PTPLTPDLKRLHQSSPADFPSLRNLGFDETNI---SFPPLDID-----------KPLIRQ 211
Query: 83 FEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWRE 142
++ P E T+ L +L+FG LS+R E +K+ AT L ++ WRE
Sbjct: 212 YDNMRDFP--AEDKTSHLGIHLRFGTLSIRKLALEAEKLNAT---------FLSELVWRE 260
Query: 143 FYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIH 202
F+ ++ P K + W NE+ W GKTGYP +DA MR+L G++H
Sbjct: 261 FFMMILYHHPQVVTESFKKKYDNIPWRNNEEEFNKWCAGKTGYPIVDAGMRELNTTGYMH 320
Query: 203 HLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVY 261
+ R A FLT+ L + W G++ F + LLD + A N GNW W + + Q +FR++
Sbjct: 321 NRVRMITASFLTKH-LLIDWRWGEAYFAKKLLDYELASNNGNWQWAAGTGTDAQPYFRIF 379
Query: 262 SPVAFGKKTDK 272
+P + KK DK
Sbjct: 380 NPASQVKKFDK 390
>gi|375285088|ref|YP_005105527.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
NC7401]
gi|358353615|dbj|BAL18787.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
NC7401]
Length = 469
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/179 (39%), Positives = 97/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L YH L + S + Q WREF Y + P
Sbjct: 225 SMLAPYLSFGQISVKLMYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYPFT 284
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ +K L W GKTGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 285 VYKPLNKSFEYFPWNNEKKLLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 344
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 345 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 402
>gi|434376106|ref|YP_006610750.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
gi|401874663|gb|AFQ26830.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
Length = 476
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 121/238 (50%), Gaps = 14/238 (5%)
Query: 39 HLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTT 98
HL+PT+ ES + E A K +K ++K + + + PN + + +
Sbjct: 182 HLLPTIPWTSHIESI-----WEPTEEGAYKTFKKFFSSK--LASYSEGRDFPN--QNAHS 232
Query: 99 VLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+L+PYL FG +SV+L YH L K S + Q+ WREF Y + P
Sbjct: 233 MLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTV 292
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ R AVA FL +
Sbjct: 293 YKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLVK 352
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 353 -HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|347760850|ref|YP_004868411.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter xylinus NBRC
3288]
gi|347579820|dbj|BAK84041.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter xylinus NBRC
3288]
Length = 466
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 131/275 (47%), Gaps = 28/275 (10%)
Query: 9 VLESLPKPKPADDAPTSL------PRECQGILHPDE-HLVPTMKE--MGLDESSIPLCKF 59
++++ P P P SL P + L P L+PT + GL ++ P
Sbjct: 152 AVQAMEAPLPPVSVPASLTFASLPPAVGEQQLAPSALRLLPTRPDWAQGLRDTWQP---- 207
Query: 60 PGGETEALKRLEKSLANK--EWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHE 117
GE RL+ +A + + R+ + P P+T+ LSPYL+FG +S R +H
Sbjct: 208 --GEQAGQARLDSFVAKRMAGYARQRDLPA------RPATSALSPYLRFGHVSSRQVWH- 258
Query: 118 LKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEA 177
+ A + L ++ WR+F + + P ++ W T+ L+A
Sbjct: 259 --AVAAGKEMDEDGACFLSEVGWRDFAHATLFEFPEMATRSLRPEYDRMPWRTDPAALQA 316
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W G+TGYP +DA MR+L GW+H+ R VA FLT+ L L W G+ F + L+DAD
Sbjct: 317 WQQGRTGYPIVDAGMRELWHTGWMHNRVRMIVASFLTK-HLLLDWRAGERWFADTLVDAD 375
Query: 238 WAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
A N NW W++ +FR+++PV G+K D
Sbjct: 376 GASNPFNWQWVAGCGLDAAPYFRIFNPVLQGEKFD 410
>gi|257422581|ref|ZP_05599571.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis X98]
gi|422706634|ref|ZP_16764332.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0043]
gi|257164405|gb|EEU94365.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis X98]
gi|315155723|gb|EFT99739.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0043]
Length = 477
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 10/221 (4%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
+ IPL + GE A +RL + K ++ +E P + T+ LS +L+ G LS+
Sbjct: 189 ARIPLTHYSVGEETARRRLNTFIDQK--LQSYENKRDFP--YQDQTSHLSTFLRTGELSI 244
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R + EL A+ P + + ++ WR+FY ++ S P + + + W +
Sbjct: 245 RTIWQEL----ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQWTND 300
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+ F++
Sbjct: 301 PEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEKYFQK 359
Query: 232 LLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 360 MLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 400
>gi|298675064|ref|YP_003726814.1| deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum
Z-7303]
gi|298288052|gb|ADI74018.1| Deoxyribodipyrimidine photo-lyase [Methanohalobium evestigatum
Z-7303]
Length = 459
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 114/213 (53%), Gaps = 16/213 (7%)
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHE-LK 119
GG + ALK LE N + + +E P +TT LS + KFG +S+R FY+ +
Sbjct: 203 GGRSNALKILE----NLDEFKNYENERDYP--FLDATTGLSAHNKFGTISIREFYYTVID 256
Query: 120 KILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
K+ + P L+ Q+YWR+FY + P K K ++WD + + W
Sbjct: 257 KLGISHP-------LITQLYWRDFYTYLAHHYPYIFKQSFKKKFDSIEWDNDSDKFKKWC 309
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
G+TG+P +DA +R++ G++H+ R A FL + DL++ W+ G+ F L+D D +
Sbjct: 310 AGETGFPIVDAGIREMNYTGYMHNRVRMITASFLVK-DLHIDWKWGEQYFARKLVDYDKS 368
Query: 240 MNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+N GNW W +++ Q FFR+++P + KK D
Sbjct: 369 VNIGNWQWSASTGPDAQPFFRIFNPWSQQKKFD 401
>gi|228966105|ref|ZP_04127168.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
sotto str. T04001]
gi|402559511|ref|YP_006602235.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-771]
gi|423359850|ref|ZP_17337353.1| hypothetical protein IC1_01830 [Bacillus cereus VD022]
gi|228793590|gb|EEM41130.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
sotto str. T04001]
gi|401083011|gb|EJP91275.1| hypothetical protein IC1_01830 [Bacillus cereus VD022]
gi|401788163|gb|AFQ14202.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-771]
Length = 476
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 121/238 (50%), Gaps = 14/238 (5%)
Query: 39 HLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTT 98
HL+PT+ ES + E A K +K ++K + + + PN + + +
Sbjct: 182 HLLPTIPWTSHIESI-----WEPTEEGAYKTFKKFFSSK--LASYSEGRDFPN--QNAHS 232
Query: 99 VLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+L+PYL FG +SV+L YH L K S + Q+ WREF Y + P
Sbjct: 233 MLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTV 292
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ R AVA FL +
Sbjct: 293 YKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLVK 352
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 353 -HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|29376159|ref|NP_815313.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis V583]
gi|227518787|ref|ZP_03948836.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0104]
gi|422714588|ref|ZP_16771314.1| FAD binding domain of DNA photolyase [Enterococcus faecalis
TX0309A]
gi|422715846|ref|ZP_16772562.1| FAD binding domain of DNA photolyase [Enterococcus faecalis
TX0309B]
gi|424676729|ref|ZP_18113600.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV103]
gi|424681453|ref|ZP_18118240.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV116]
gi|424683643|ref|ZP_18120393.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV129]
gi|424686453|ref|ZP_18123121.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV25]
gi|424690275|ref|ZP_18126810.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV31]
gi|424695368|ref|ZP_18131751.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV37]
gi|424696893|ref|ZP_18133234.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV41]
gi|424699721|ref|ZP_18135932.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV62]
gi|424703266|ref|ZP_18139400.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV63]
gi|424707237|ref|ZP_18143221.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV65]
gi|424717102|ref|ZP_18146400.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV68]
gi|424720681|ref|ZP_18149782.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV72]
gi|424724230|ref|ZP_18153179.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV73]
gi|424733819|ref|ZP_18162374.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV81]
gi|424743880|ref|ZP_18172185.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV85]
gi|424750610|ref|ZP_18178674.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV93]
gi|29343622|gb|AAO81383.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis V583]
gi|227073782|gb|EEI11745.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX0104]
gi|315575832|gb|EFU88023.1| FAD binding domain of DNA photolyase [Enterococcus faecalis
TX0309B]
gi|315580484|gb|EFU92675.1| FAD binding domain of DNA photolyase [Enterococcus faecalis
TX0309A]
gi|402351160|gb|EJU86052.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV116]
gi|402356349|gb|EJU91083.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV103]
gi|402364402|gb|EJU98838.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV31]
gi|402364641|gb|EJU99076.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV129]
gi|402367307|gb|EJV01648.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV25]
gi|402368545|gb|EJV02858.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV37]
gi|402375650|gb|EJV09630.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV62]
gi|402377222|gb|EJV11133.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV41]
gi|402384835|gb|EJV18376.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV65]
gi|402385271|gb|EJV18811.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV63]
gi|402386450|gb|EJV19956.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV68]
gi|402391149|gb|EJV24465.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV81]
gi|402393152|gb|EJV26382.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV72]
gi|402395537|gb|EJV28639.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV73]
gi|402399794|gb|EJV32657.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV85]
gi|402406588|gb|EJV39138.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
ERV93]
Length = 477
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 10/221 (4%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
+ IPL + GE A +RL + K ++ +E P + T+ LS +L+ G LS+
Sbjct: 189 ARIPLTHYSVGEETARRRLNTFIDQK--LQSYENKRDFP--YQDQTSHLSTFLRTGELSI 244
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R + EL A+ P + + ++ WR+FY ++ S P + + + W +
Sbjct: 245 RTIWQEL----ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQWTND 300
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+ F++
Sbjct: 301 PEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEKYFQK 359
Query: 232 LLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 360 MLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 400
>gi|256961892|ref|ZP_05566063.1| phrB [Enterococcus faecalis Merz96]
gi|293382960|ref|ZP_06628878.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis R712]
gi|293389551|ref|ZP_06634008.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis S613]
gi|312907569|ref|ZP_07766560.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
512]
gi|312910187|ref|ZP_07769034.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
516]
gi|256952388|gb|EEU69020.1| phrB [Enterococcus faecalis Merz96]
gi|291079625|gb|EFE16989.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis R712]
gi|291081168|gb|EFE18131.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis S613]
gi|310626597|gb|EFQ09880.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
512]
gi|311289460|gb|EFQ68016.1| FAD binding domain of DNA photolyase [Enterococcus faecalis DAPTO
516]
Length = 477
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 10/221 (4%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
+ IPL + GE A +RL + K ++ +E P + T+ LS +L+ G LS+
Sbjct: 189 ARIPLTHYSVGEETARRRLNTFIDQK--LQSYENKRDFP--YQDQTSHLSTFLRTGELSI 244
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R + EL A+ P + + ++ WR+FY ++ S P + + + W +
Sbjct: 245 RTIWQEL----ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQWTND 300
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+ F++
Sbjct: 301 PEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEKYFQK 359
Query: 232 LLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 360 MLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 400
>gi|117618175|ref|YP_855643.1| deoxyribodipyrimidine photolyase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117559582|gb|ABK36530.1| deoxyribodipyrimidine photolyase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 473
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 111/222 (50%), Gaps = 17/222 (7%)
Query: 58 KFPGGETEALKRL----EKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRL 113
++P GE EA +RL E+++ + R F P A T+VLSPYL G +S R
Sbjct: 202 RWPVGEAEASRRLNDFLEQAVLDYGETRDF--PAIA------GTSVLSPYLAAGIISPRQ 253
Query: 114 FYHELKKILATGPHAK--PPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKI-CCQVDWDT 170
L++ L P +K P L ++ WREFY + P + K + W
Sbjct: 254 CVAALQQRLGYRPQSKAQPGFVWLNELIWREFYRHLLVQIPTLSMNRPFKPETAALPWSW 313
Query: 171 NEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFE 230
+ AW G+TGYP +DA MR L GW+H+ R VA FLT+ DL++ W G+ F
Sbjct: 314 DPDAFAAWCEGRTGYPIVDAAMRCLNATGWMHNRLRMIVASFLTK-DLHIHWRLGEDYFM 372
Query: 231 ELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
L+D D A N G W W + + A +FRV++P G++ D
Sbjct: 373 SRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFD 414
>gi|67516211|ref|XP_657991.1| hypothetical protein AN0387.2 [Aspergillus nidulans FGSC A4]
gi|40747330|gb|EAA66486.1| hypothetical protein AN0387.2 [Aspergillus nidulans FGSC A4]
gi|259489370|tpe|CBF89585.1| TPA: DNA photolyase (Eurofung) [Aspergillus nidulans FGSC A4]
Length = 567
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 114/221 (51%), Gaps = 15/221 (6%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTV-LSPYLKFGCLSVRLFYHE 117
FP GE E L+RLE E++ K + N L TT LSPY G LS R +
Sbjct: 294 FPAGEHEGLRRLE------EFLEKATAYDDERNFLSGETTSKLSPYFASGSLSARTAVAK 347
Query: 118 LKKILATGPHAKPP--VSLLGQIYWREFYYVVGSDTPNFDKMKGNKI-CCQVDWDTNEKY 174
++ A +S + ++ WR+FY V P K K +DW N +
Sbjct: 348 AREANAGKISRGEAGYISWISEVAWRDFYKHVLVHWPFICMNKCFKFEFTNIDWSYNNTH 407
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
EAW+ GKTGYP +DA MRQL W+H+ R V+ FL + DL + W G+ F E L+
Sbjct: 408 FEAWAAGKTGYPLVDAAMRQLHATAWMHNRCRMVVSSFLCK-DLLIDWRRGERYFMEHLI 466
Query: 235 DADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDKFE 274
D D+A N G W + S++ Q +FR+++P+ +++++F+
Sbjct: 467 DGDFASNHGGWGFGSSTGVDPQPYFRIFNPI---RQSERFD 504
>gi|429092381|ref|ZP_19155017.1| Deoxyribodipyrimidine photolyase [Cronobacter dublinensis 1210]
gi|426742861|emb|CCJ81130.1| Deoxyribodipyrimidine photolyase [Cronobacter dublinensis 1210]
Length = 473
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 104/217 (47%), Gaps = 11/217 (5%)
Query: 59 FPGGETEALKRLEK--SLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
FP GE AL+RL + A ++ K + P T++LSPYL G LS R H
Sbjct: 203 FPAGEEAALQRLREFCQTAAGDYPEKRDFPAIR------GTSLLSPYLAIGVLSPRQCLH 256
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYL 175
L L ++ WREFY + P + + +V W N+
Sbjct: 257 RLLTEHPRALEGGSGAVWLNELIWREFYRHLIVAWPCLCRHQPFVDWTARVAWQQNDALF 316
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
EAW G+TGYP +DA MRQ+ GW+H+ R A FL + DL + W G+ F L+D
Sbjct: 317 EAWCEGRTGYPIVDAAMRQMNATGWMHNRLRMITASFLVK-DLLVDWRRGERYFMSQLID 375
Query: 236 ADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D+A N G W W +++ +FR+++P G++ D
Sbjct: 376 GDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFD 412
>gi|218898230|ref|YP_002446641.1| deoxyribodipyrimidine photolyase [Bacillus cereus G9842]
gi|218544312|gb|ACK96706.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
G9842]
Length = 476
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 121/238 (50%), Gaps = 14/238 (5%)
Query: 39 HLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTT 98
HL+PT+ ES + E A K +K ++K + + + PN + + +
Sbjct: 182 HLLPTIPWTSHIESI-----WEPTEEGAYKTFKKFFSSK--LASYSEGRDFPN--QNAHS 232
Query: 99 VLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+L+PYL FG +SV+L YH L K S + Q+ WREF Y + P
Sbjct: 233 MLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTV 292
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ R AVA FL +
Sbjct: 293 YKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLVK 352
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 353 -HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|113474888|ref|YP_720949.1| deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
gi|110165936|gb|ABG50476.1| Deoxyribodipyrimidine photo-lyase type I [Trichodesmium erythraeum
IMS101]
Length = 474
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 126/234 (53%), Gaps = 10/234 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+PT K++G + + + + GET AL++LEK +N + +++ P SL+ T+ L
Sbjct: 189 LPTAKQLGFNWDNKLILE--PGETAALEKLEK-FSNGA-ISSYQEQRNFP-SLD-GTSQL 242
Query: 101 SPYLKFGCLSVRLFYHELKKILATGPHAKPPVSL---LGQIYWREFYYVVGSDTPNFDKM 157
S LKFG + +R + + ++++ ++ ++ +I WREFY V P +
Sbjct: 243 SVALKFGTIGIRTVWAKTQELIENCYSSEVFENIETWQKEIAWREFYQYVMYHYPELETG 302
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ W N+ + +AW G TGYP +DA MRQL GW+H+ R VA FLT+ D
Sbjct: 303 PYREHWKNFPWKNNKAHFQAWCEGNTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTK-D 361
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
L ++W+ G+ F + L+D D N G W W ++S + R+++PV+ +K D
Sbjct: 362 LIINWQWGEKYFMQNLIDGDLCANNGGWQWSASSGMDPKPLRIFNPVSQTQKYD 415
>gi|406675941|ref|ZP_11083127.1| hypothetical protein HMPREF1170_01335 [Aeromonas veronii AMC35]
gi|404626164|gb|EKB22974.1| hypothetical protein HMPREF1170_01335 [Aeromonas veronii AMC35]
Length = 473
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 111/222 (50%), Gaps = 17/222 (7%)
Query: 58 KFPGGETEALKRL----EKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRL 113
++P GE EA +RL E+++ + R F P A T+VLSPYL G +S R
Sbjct: 202 RWPVGEAEARRRLNDFLEQAVLDYGETRDF--PAIA------GTSVLSPYLAAGIISPRQ 253
Query: 114 FYHELKKILATGPHAK--PPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKI-CCQVDWDT 170
L++ L P +K P L ++ WREFY + P + K + W
Sbjct: 254 CVAALQQRLGYRPQSKAQPGFVWLNELIWREFYRHLLVLIPTLSMNRPFKAETAALPWSW 313
Query: 171 NEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFE 230
+ AW G+TGYP +DA MR L GW+H+ R VA FLT+ DL++ W G+ F
Sbjct: 314 DPDAFAAWCEGRTGYPIVDAAMRCLNTTGWMHNRLRMIVASFLTK-DLHIHWRLGEDYFM 372
Query: 231 ELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
L+D D A N G W W + + A +FRV++P G++ D
Sbjct: 373 SRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFD 414
>gi|46906833|ref|YP_013222.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
4b str. F2365]
gi|405751816|ref|YP_006675281.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2378]
gi|424713475|ref|YP_007014190.1| Deoxyribodipyrimidine photo-lyase [Listeria monocytogenes serotype
4b str. LL195]
gi|46880099|gb|AAT03399.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
4b str. F2365]
gi|404221016|emb|CBY72379.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2378]
gi|424012659|emb|CCO63199.1| Deoxyribodipyrimidine photo-lyase [Listeria monocytogenes serotype
4b str. LL195]
Length = 467
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 115/221 (52%), Gaps = 12/221 (5%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
S +P+ GE A RL + K V ++K P T+ LS YL+ G +S+
Sbjct: 186 SDLPILDI--GERAANTRLANFI--KHDVADYDKARDFPEL--DKTSHLSRYLRTGEISI 239
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R + L++ AT A + ++ WR+FY ++ PN + ++W+ N
Sbjct: 240 RTIWQSLQETEATEGRA----TFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENN 295
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+Y +AW GKTG+P +DA MRQL+ GW+H+ R A FLT+ DL + W G+ F++
Sbjct: 296 REYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK-DLLIDWRFGEKYFQQ 354
Query: 232 LLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+L+D D A N G W W +++ +FR+++P +K D
Sbjct: 355 MLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395
>gi|226946177|ref|YP_002801250.1| Deoxyribodipyrimidine photolyase [Azotobacter vinelandii DJ]
gi|226721104|gb|ACO80275.1| Deoxyribodipyrimidine photolyase [Azotobacter vinelandii DJ]
Length = 468
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 112/216 (51%), Gaps = 11/216 (5%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
+P GE A +RL + + N+ + + + P EP T+ LSPYL G LS R H
Sbjct: 203 WPAGEIAAQRRLHEFVENR--LAAYAEARDFPA--EPGTSRLSPYLAAGVLSPRQCLH-- 256
Query: 119 KKILATGPHAKPPVSL-LGQIYWREFYYVVGSDTPNFDKMKGNKICCQ-VDWDTNEKYLE 176
+L TG +P S ++ WREFY + + P + + + + W + L
Sbjct: 257 -AVLRTGGFDRPEASAWFDELLWREFYKHILAGHPRVSMGRALRTETEALPWRDAPQELA 315
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
AW G+TG+P IDA MRQL GW+H+ R VA FL++ +L + W G+ F L+D
Sbjct: 316 AWQQGRTGFPLIDAAMRQLLATGWMHNRLRMVVAMFLSK-NLLIDWRHGERWFMHHLIDG 374
Query: 237 DWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D A N G W W +++ +FR+++P+A ++ D
Sbjct: 375 DLAANNGGWQWCASTGTDAVPYFRLFNPLAQSRRFD 410
>gi|385872663|gb|AFI91183.1| Deoxyribodipyrimidine photolyase [Pectobacterium sp. SCC3193]
Length = 492
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 110/217 (50%), Gaps = 9/217 (4%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FP GE AL++L + +E V+ +++ P +P T+ LSPYL G +S R ++ L
Sbjct: 206 FPCGERAALQQLRRFC--REQVQDYDQQRDFP--AQPGTSKLSPYLALGIVSPRQCFNRL 261
Query: 119 KKILATGPHAKP--PVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQ-VDWDTNEKYL 175
+ + + ++ WREFY + P K + Q V W + + L
Sbjct: 262 RTECPEMLERREGGAFTWFNELVWREFYRHLIVSWPLLCKHRPFTAWTQWVKWRESPEDL 321
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
AW GKTGYP +DA MRQL GW+H+ R A FL + DL + W EG+ F LLD
Sbjct: 322 AAWQQGKTGYPIVDAAMRQLNETGWMHNRLRMICASFLVK-DLLIDWREGERYFMSQLLD 380
Query: 236 ADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D A N G W W +++ +FR+++P G++ D
Sbjct: 381 GDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFD 417
>gi|308186057|ref|YP_003930188.1| deoxyribodipyrimidine photolyase [Pantoea vagans C9-1]
gi|308056567|gb|ADO08739.1| Deoxyribodipyrimidine photolyase [Pantoea vagans C9-1]
Length = 474
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 130/274 (47%), Gaps = 36/274 (13%)
Query: 8 SVLESLPKPKPADDAP---TSLPR-ECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGE 63
S+ E +P PKP D AP T +P +C P E DE FP GE
Sbjct: 167 SLPECVPAPKPRDGAPLKTTPIPAFDC-----PTE---------AFDEDL-----FPAGE 207
Query: 64 TEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILA 123
ALKRL + A + + + P +T+ LS YL G LS R H ++L
Sbjct: 208 AAALKRL-RHFATQPII---DYPAKRDLPALDATSRLSVYLSTGVLSPRQCLH---RVLH 260
Query: 124 TGPHA---KPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYLEAWS 179
P A + L ++ WREFY + P + K V+W + + +AW
Sbjct: 261 EHPDALDNSRAFTWLNELIWREFYRHLLVAYPALCRHKPFIDWTRNVEWQREDAHFDAWK 320
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
GKTGYP +DA MRQ++ GW+H+ R A FL + DL + W EG+ F + L+D D A
Sbjct: 321 AGKTGYPIVDAAMRQMKALGWMHNRLRMITASFLVK-DLLIDWREGERYFMQQLIDGDLA 379
Query: 240 MNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDK 272
N G W W +++ +FR+++P G++ D+
Sbjct: 380 ANNGGWQWAASTGTDSAPYFRIFNPTTQGERFDE 413
>gi|229030832|ref|ZP_04186854.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271]
gi|228730481|gb|EEL81439.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271]
Length = 476
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 119/238 (50%), Gaps = 14/238 (5%)
Query: 39 HLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTT 98
HL+PT+ ES + E A K +K ++K + + + PN E + +
Sbjct: 182 HLLPTIPWTSHIESM-----WEPTEEGAYKTCKKFFSSK--LASYSEGRDFPN--ENAHS 232
Query: 99 VLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+L+PYL FG +SVR YH L K S + Q WREF Y + P
Sbjct: 233 MLAPYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFIRQFIWREFSYYLLYHYPFTV 292
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
NK W+ E+ L W G TGYPFIDA MR+L G++H+ AR AVA FL +
Sbjct: 293 YKPLNKSFEHFPWNNEEELLTVWQKGDTGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 353 -HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|256762534|ref|ZP_05503114.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T3]
gi|256683785|gb|EEU23480.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T3]
Length = 473
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 10/221 (4%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
+ IPL + GE A +RL + K ++ +E P + T+ LS +L+ G LS+
Sbjct: 185 ARIPLTHYSVGEETARRRLNTFIDQK--LQSYENKRDFP--YQDQTSHLSTFLRTGELSI 240
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R + EL A+ P + + ++ WR+FY ++ S P + + + W +
Sbjct: 241 RTIWQEL----ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQWTND 296
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+ F++
Sbjct: 297 PEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEKYFQK 355
Query: 232 LLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 356 MLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 396
>gi|300765347|ref|ZP_07075330.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
N1-017]
gi|404280146|ref|YP_006681044.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2755]
gi|404285957|ref|YP_006692543.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype 7
str. SLCC2482]
gi|300513908|gb|EFK40972.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
N1-017]
gi|404226781|emb|CBY48186.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2755]
gi|404244886|emb|CBY03111.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype 7
str. SLCC2482]
Length = 467
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 115/221 (52%), Gaps = 12/221 (5%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
S +P+ GE A RL + K V ++K P T+ LS YL+ G +S+
Sbjct: 186 SDLPILDI--GERAANTRLANFI--KHDVADYDKARDFPEL--DKTSHLSRYLRTGEISI 239
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R + L++ AT A + ++ WR+FY ++ PN + ++W+ N
Sbjct: 240 RTIWQTLQETEATEGRA----TFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENN 295
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+Y +AW GKTG+P +DA MRQL+ GW+H+ R A FLT+ DL + W G+ F++
Sbjct: 296 REYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK-DLLIDWRFGEKYFQQ 354
Query: 232 LLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+L+D D A N G W W +++ +FR+++P +K D
Sbjct: 355 MLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395
>gi|228986230|ref|ZP_04146370.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228773492|gb|EEM21918.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 476
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 121/238 (50%), Gaps = 14/238 (5%)
Query: 39 HLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTT 98
HL+PT+ ES + E A K +K ++K + + + PN + + +
Sbjct: 182 HLLPTIPWTSHMESI-----WEPTEEGAYKTFKKFFSSK--LVSYSEGRDFPN--QNAHS 232
Query: 99 VLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+L+PYL FG +SV+L YH L + S + Q WREF Y + P
Sbjct: 233 MLAPYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYPFTV 292
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL +
Sbjct: 293 YKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 353 -HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|149187439|ref|ZP_01865737.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1]
gi|148838975|gb|EDL55914.1| deoxyribodipyrimidine photolyase [Vibrio shilonii AK1]
Length = 467
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 96/178 (53%), Gaps = 3/178 (1%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
ST++LSPYL G +S R LK A + + L ++ WREFY + P
Sbjct: 231 STSMLSPYLAIGAISARQCVARLKYDAANTSLSTGAETWLSELIWREFYQHLIYFEPKLC 290
Query: 156 KMKGN-KICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
K G + W + + W GKTGYP +DA MRQL +GW+H+ R VA FLT
Sbjct: 291 KHHGYLSWEKHLKWTGKLDHFKQWCEGKTGYPIVDAAMRQLNTKGWMHNRLRMVVASFLT 350
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+ DL++ W G+ F L+D D+A N G W W +++ Q +FR+++P++ G+K D
Sbjct: 351 K-DLHIDWRLGEQYFMTQLIDGDFAANNGGWQWCASTGCDGQPYFRIFNPISQGEKFD 407
>gi|257053940|ref|YP_003131773.1| Deoxyribodipyrimidine photo-lyase [Halorhabdus utahensis DSM 12940]
gi|256692703|gb|ACV13040.1| Deoxyribodipyrimidine photo-lyase [Halorhabdus utahensis DSM 12940]
Length = 470
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 120/240 (50%), Gaps = 13/240 (5%)
Query: 37 DEHLVPTMKEMGLDESSIPLCKFPG-GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP 95
D+ VPT ++ ++E P PG A +RL+ A + ++E P E
Sbjct: 175 DDTPVPTWADLDVEE---PTASIPGVTPAAARERLDSFCAGD--IYRYEDRRDYP--AED 227
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLL---GQIYWREFYYVVGSDTP 152
T+ LS +LK+G + +R Y ++ G A S+ Q+ WREFY V P
Sbjct: 228 CTSRLSHHLKYGTIGIRAVYAATERACERGETADDRASVREFQSQLAWREFYTQVLWFNP 287
Query: 153 NFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
+ ++W T+ + L+AW G+TGYP +DA MRQL ++H+ R VA F
Sbjct: 288 SVVTENFKSYENPIEWRTDPEGLQAWKDGETGYPIVDAGMRQLETAAYMHNRVRMIVASF 347
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
LT+ DL + W EG F L+D D A + G W W +++ Q +FR+++P+ G++ D
Sbjct: 348 LTK-DLLIDWREGYDWFRAKLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYD 406
>gi|384228297|ref|YP_005620032.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Ua
(Uroleucon ambrosiae)]
gi|345539230|gb|AEO08097.1| deoxyribodipyrimidine photolyase [Buchnera aphidicola str. Ua
(Uroleucon ambrosiae)]
Length = 479
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 98/199 (49%), Gaps = 16/199 (8%)
Query: 59 FPGGETEALKRLEK----SLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
FP GE EA+ RL+ N +KF SL S ++LSPYL G +S R
Sbjct: 203 FPIGEKEAISRLKNFCTYKTKNYALKKKF--------SLIDSASMLSPYLSAGIISSRHC 254
Query: 115 YHELKKILATGPHAKPPVSL-LGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNE 172
L+ I S QI WREFYY + P K + K +DW N
Sbjct: 255 LIMLRNIQNQESFKNILNSTWFNQILWREFYYHLLIGFPEISKFQSLTKWEKNIDWIDNI 314
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
KYL AW G TG+P IDA MRQL GW+H+ R A FL + +L++ W +G+ F
Sbjct: 315 KYLNAWKEGNTGFPIIDASMRQLNQLGWMHNRLRMITASFLVK-NLFIDWRQGEKYFMSR 373
Query: 233 LLDADWAMNAGNWMWLSAS 251
L+D D A+N G W W SAS
Sbjct: 374 LIDGDLALNNGGWQW-SAS 391
>gi|299769190|ref|YP_003731216.1| deoxyribodipyrimidine photo-lyase [Acinetobacter oleivorans DR1]
gi|298699278|gb|ADI89843.1| deoxyribodipyrimidine photo-lyase [Acinetobacter oleivorans DR1]
Length = 480
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 113/218 (51%), Gaps = 13/218 (5%)
Query: 60 PGGETEALKRLEKSLANKEWVRKFEK--PNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHE 117
P GE AL++L+ + N K E+ PN T+ LSPYL G LS+R
Sbjct: 214 PTGEGFALEQLDVFIENHLSDYKLERDFPNVK------GTSQLSPYLNLGILSIRQCLQA 267
Query: 118 LKKILATGPHA--KPPVSLLGQIYWREFYYVVGSDTPNFDK-MKGNKICCQVDWDTNEKY 174
L + H + + L ++ WREFY + D P+ K + K ++ W+ N ++
Sbjct: 268 LFRTEHGNFHIANEGQQTWLDELLWREFYQHILFDFPHVSKHIPFKKDTQKIKWNHNPEH 327
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
L AW G+TG P IDA MRQL+ GW+H+ R A FL + +L + W G+ F E L+
Sbjct: 328 LTAWQTGQTGIPIIDAGMRQLQKTGWMHNRVRMITAMFLCK-NLLIDWRIGEQWFMEHLI 386
Query: 235 DADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTD 271
D D A N G W W +++ +FR+++P+A KK D
Sbjct: 387 DGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKFD 424
>gi|444428257|ref|ZP_21223599.1| deoxyribodipyrimidine photolyase, partial [Vibrio campbellii CAIM
519 = NBRC 15631]
gi|444238491|gb|ELU50094.1| deoxyribodipyrimidine photolyase, partial [Vibrio campbellii CAIM
519 = NBRC 15631]
Length = 248
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 99/181 (54%), Gaps = 9/181 (4%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAK---PPVSLLGQIYWREFYYVVGSDTP 152
T+ LSPYL G LS R + ++ A PH + L +I WREFY + P
Sbjct: 14 GTSQLSPYLAIGALSPR---QCIARLYAENPHTDLTDGKATWLSEIIWREFYQHLLVFEP 70
Query: 153 NFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVAC 211
K KG +++W +E E W G TGYP +DA MRQL GW+H+ R VA
Sbjct: 71 KLVKGKGFIPWEDKIEWSYDEAAFERWKTGTTGYPIVDAAMRQLNTTGWMHNRLRMIVAS 130
Query: 212 FLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKT 270
FLT+ DL++ W G++ F L+D D+A N G W W +++ Q +FR+++P++ G+K
Sbjct: 131 FLTK-DLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKF 189
Query: 271 D 271
D
Sbjct: 190 D 190
>gi|261822355|ref|YP_003260461.1| deoxyribodipyrimidine photolyase [Pectobacterium wasabiae WPP163]
gi|261606368|gb|ACX88854.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium wasabiae WPP163]
Length = 492
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 110/217 (50%), Gaps = 9/217 (4%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FP GE AL++L + +E V+ +++ P +P T+ LSPYL G +S R ++ L
Sbjct: 206 FPCGERAALQQLRRFC--REQVQDYDQQRDFP--AQPGTSKLSPYLALGIVSPRQCFNRL 261
Query: 119 KKILATGPHAKP--PVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQ-VDWDTNEKYL 175
+ + + ++ WREFY + P K + Q V W + + L
Sbjct: 262 RTECPEMLERREGGAFTWFNELVWREFYRHLIVSWPLLCKHRPFTAWTQWVKWRESPEDL 321
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
AW GKTGYP +DA MRQL GW+H+ R A FL + DL + W EG+ F LLD
Sbjct: 322 AAWQQGKTGYPIVDAAMRQLNETGWMHNRLRMICASFLVK-DLLIDWREGERYFMSQLLD 380
Query: 236 ADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D A N G W W +++ +FR+++P G++ D
Sbjct: 381 GDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFD 417
>gi|254824139|ref|ZP_05229140.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-194]
gi|254932137|ref|ZP_05265496.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HPB2262]
gi|255521880|ref|ZP_05389117.1| DNA photolyase [Listeria monocytogenes FSL J1-175]
gi|405748953|ref|YP_006672419.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes ATCC
19117]
gi|417316860|ref|ZP_12103492.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J1-220]
gi|424822329|ref|ZP_18247342.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes str. Scott
A]
gi|293583693|gb|EFF95725.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HPB2262]
gi|293593371|gb|EFG01132.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-194]
gi|328475764|gb|EGF46505.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J1-220]
gi|332311009|gb|EGJ24104.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes str. Scott
A]
gi|404218153|emb|CBY69517.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes ATCC
19117]
Length = 467
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 115/221 (52%), Gaps = 12/221 (5%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
S +P+ GE A RL + K V ++K P T+ LS YL+ G +S+
Sbjct: 186 SDLPILDI--GERAANTRLANFI--KHDVADYDKARDFPEL--DKTSHLSRYLRTGEISI 239
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R + L++ AT A + ++ WR+FY ++ PN + ++W+ N
Sbjct: 240 RTIWQTLQETEATEGRA----TFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENN 295
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+Y +AW GKTG+P +DA MRQL+ GW+H+ R A FLT+ DL + W G+ F++
Sbjct: 296 REYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK-DLLIDWRFGEKYFQQ 354
Query: 232 LLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+L+D D A N G W W +++ +FR+++P +K D
Sbjct: 355 MLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395
>gi|42782239|ref|NP_979486.1| deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10987]
gi|42738164|gb|AAS42094.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
ATCC 10987]
Length = 476
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 121/238 (50%), Gaps = 14/238 (5%)
Query: 39 HLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTT 98
HL+PT+ ES + E A K +K ++K + + + PN + + +
Sbjct: 182 HLLPTIPWTSHIESI-----WDPTEEGAYKTCKKFFSSK--LASYSEGRDFPN--QNAHS 232
Query: 99 VLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+L+PYL FG +SVR YH L K S + Q+ WREF Y + P
Sbjct: 233 MLAPYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTV 292
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL +
Sbjct: 293 YKPLNKNFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 353 -HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|390437938|ref|ZP_10226447.1| Deoxyribodipyrimidine photo-lyase [Microcystis sp. T1-4]
gi|389838649|emb|CCI30571.1| Deoxyribodipyrimidine photo-lyase [Microcystis sp. T1-4]
Length = 474
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 120/239 (50%), Gaps = 15/239 (6%)
Query: 41 VPTMKEMGLD-ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTV 99
+PT++ +G ++ +PL GE A RLE+ + +++ P T+
Sbjct: 187 LPTLENLGFTWQNPLPLTP---GEKAATSRLEEFCQGV--INNYQEDRNFPAF--DGTSR 239
Query: 100 LSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFDK 156
LS LKFG + +R + ++L + S++ ++ WREFY P
Sbjct: 240 LSAALKFGAIGIRTIWTATLELLENCRAEEAKNSIITWQQELAWREFYQHCLYFFPELAV 299
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K W NE++ +AW GKTGYP +DA MRQL GW+H+ R VA FLT+
Sbjct: 300 GAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTK- 358
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFEL 275
DL ++W++G+ F + L D D A N G W W ++S + R+++P + +T KF+L
Sbjct: 359 DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPAS---QTQKFDL 414
>gi|375263826|ref|YP_005026056.1| deoxyribodipyrimidine photolyase [Vibrio sp. EJY3]
gi|369844253|gb|AEX25081.1| deoxyribodipyrimidine photolyase [Vibrio sp. EJY3]
Length = 471
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 97/182 (53%), Gaps = 13/182 (7%)
Query: 97 TTVLSPYLKFGCLS-----VRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDT 151
T+ LSPYL G LS RLF + L G + L +I WREFY +
Sbjct: 238 TSQLSPYLAIGALSPRQCIARLFAENEQSDLTEGK-----ATWLSEIIWREFYQHLLVFE 292
Query: 152 PNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVA 210
P K KG ++ W +EK E W G TGYP +DA MRQL GW+H+ R VA
Sbjct: 293 PKLVKGKGFIDWEDKIQWSYDEKAFERWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVA 352
Query: 211 CFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKK 269
FLT+ DL++ W G+ F L+D D+A N G W W +++ Q +FR+++PV+ G+K
Sbjct: 353 SFLTK-DLHIDWRWGEKYFMSQLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPVSQGEK 411
Query: 270 TD 271
D
Sbjct: 412 FD 413
>gi|423605178|ref|ZP_17581071.1| hypothetical protein IIK_01759 [Bacillus cereus VD102]
gi|401244326|gb|EJR50690.1| hypothetical protein IIK_01759 [Bacillus cereus VD102]
Length = 476
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 121/238 (50%), Gaps = 14/238 (5%)
Query: 39 HLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTT 98
HL+PT+ ES + E A K +K ++K + + + PN + + +
Sbjct: 182 HLLPTIPWTSHMESI-----WEPTEEGAYKTFKKFFSSK--LVSYSEGRDFPN--QNAHS 232
Query: 99 VLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+L+PYL FG +SV+L YH L + S + Q WREF Y + P
Sbjct: 233 MLAPYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYPFTV 292
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL +
Sbjct: 293 YKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 353 -HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|384181025|ref|YP_005566787.1| deoxyribodipyrimidine photolyase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|324327109|gb|ADY22369.1| deoxyribodipyrimidine photolyase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 476
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 122/238 (51%), Gaps = 14/238 (5%)
Query: 39 HLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTT 98
HL+PT++ ES + E A K +K ++K + + + PN E + +
Sbjct: 182 HLLPTIRWTTHMESI-----WDPTEEGAYKTCKKFFSSK--LASYSEGRDFPN--ENAHS 232
Query: 99 VLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+L+PYL FG +SV+ YH L K S + Q+ WREF Y + P
Sbjct: 233 MLAPYLSFGQISVKWMYHYLIDKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTV 292
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL +
Sbjct: 293 YKPLNKNFEHFPWNKEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 353 -HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|434375590|ref|YP_006610234.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
gi|401874147|gb|AFQ26314.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
Length = 476
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 111/216 (51%), Gaps = 14/216 (6%)
Query: 62 GETEALKRLEKS-LANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL-- 118
G +A K+ S LA+ R F NT ++L+PYL FG +SV YH L
Sbjct: 203 GAYKAFKKFFSSKLASYSEGRDFPNQNTH--------SMLAPYLSFGQISVSWMYHYLIN 254
Query: 119 KKILATGPHAKPPV-SLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEA 177
K + V S + Q+ WREF Y + P NK WD E+ L
Sbjct: 255 KSTERQCSLFEEQVNSFIRQLIWREFSYYLLYHYPFTVYKPLNKSFENFPWDKEEELLRV 314
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W GKTGYPFIDA MR+L G++H+ AR AVA FL + L + W+EG F + LLDAD
Sbjct: 315 WQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDAD 373
Query: 238 WAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
A N W W++ S A +FR+++P+ G+K DK
Sbjct: 374 IANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|389581360|ref|ZP_10171387.1| deoxyribodipyrimidine photolyase [Desulfobacter postgatei 2ac9]
gi|389402995|gb|EIM65217.1| deoxyribodipyrimidine photolyase [Desulfobacter postgatei 2ac9]
Length = 471
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 102/181 (56%), Gaps = 15/181 (8%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSPYL G +S R+ L ++ + ++ + ++ WR+FY+ + P+ +
Sbjct: 242 TSGLSPYLAIGAVSSRMC---LAGVI-SAEQSRGGTTWKNELLWRDFYHHLMFFIPDLSR 297
Query: 157 MK-----GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVAC 211
G+++ WD N + L AW GKTGYP +DA MRQL GW+H+ R VA
Sbjct: 298 QACFHAWGDRLL----WDDNPELLAAWQAGKTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 353
Query: 212 FLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKT 270
FLT+ DL++ W GQ+ F L+D D+ N G W W +++ Q +FR+++PV+ GKK
Sbjct: 354 FLTK-DLHIDWRHGQAYFMRHLVDGDFPANNGGWQWSASTGCDAQPYFRIFNPVSQGKKF 412
Query: 271 D 271
D
Sbjct: 413 D 413
>gi|229070649|ref|ZP_04203886.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185]
gi|229080332|ref|ZP_04212857.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2]
gi|228703001|gb|EEL55462.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2]
gi|228712471|gb|EEL64409.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185]
Length = 476
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L +H L K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|119503382|ref|ZP_01625466.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
gi|119461028|gb|EAW42119.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
Length = 481
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 99/181 (54%), Gaps = 3/181 (1%)
Query: 94 EPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVS-LLGQIYWREFYYVVGSDTP 152
+P+T+ LSPYLKFG +S R + + + P + L +I WREF + + P
Sbjct: 233 QPNTSRLSPYLKFGEISPRQIWWTAQNTKQSNPDEGSSIDKFLSEIGWREFCNHLVAQFP 292
Query: 153 NFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
N W ++++ L AW G TGYP IDA MR+L G++H+ R VA F
Sbjct: 293 AMPDKAWNPKFEYFPWQSHQRNLSAWQQGNTGYPIIDAGMRELWQTGFMHNRVRMVVASF 352
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
LT+ L + W G+ F + LLDAD A NA +W W+ S A +FR+++P+A G+K D
Sbjct: 353 LTK-HLLMHWRVGEQWFWDCLLDADLASNACSWQWVGGSGADASPYFRIFNPIAQGEKFD 411
Query: 272 K 272
K
Sbjct: 412 K 412
>gi|47093329|ref|ZP_00231098.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 4b
H7858]
gi|226223217|ref|YP_002757324.1| DNA photolyase [Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|386731355|ref|YP_006204851.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes 07PF0776]
gi|405754672|ref|YP_006678136.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2540]
gi|406703371|ref|YP_006753725.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes L312]
gi|417314672|ref|ZP_12101366.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J1816]
gi|47018298|gb|EAL09062.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
4b str. H7858]
gi|225875679|emb|CAS04382.1| Putative DNA photolyase [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|328467416|gb|EGF38492.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J1816]
gi|384390113|gb|AFH79183.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes 07PF0776]
gi|404223872|emb|CBY75234.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2540]
gi|406360401|emb|CBY66674.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes L312]
Length = 467
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 115/221 (52%), Gaps = 12/221 (5%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
S +P+ GE A RL + K V ++K P T+ LS YL+ G +S+
Sbjct: 186 SDLPILDI--GERAANTRLANFI--KHDVADYDKARDFPEL--DKTSHLSRYLRTGEISI 239
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R + L++ AT A + ++ WR+FY ++ PN + ++W+ N
Sbjct: 240 RTIWQTLQETEATEGRA----TFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENN 295
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+Y +AW GKTG+P +DA MRQL+ GW+H+ R A FLT+ DL + W G+ F++
Sbjct: 296 REYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK-DLLIDWRFGEKYFQQ 354
Query: 232 LLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+L+D D A N G W W +++ +FR+++P +K D
Sbjct: 355 MLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395
>gi|424843384|ref|ZP_18268009.1| deoxyribodipyrimidine photolyase [Saprospira grandis DSM 2844]
gi|395321582|gb|EJF54503.1| deoxyribodipyrimidine photolyase [Saprospira grandis DSM 2844]
Length = 445
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 124/256 (48%), Gaps = 33/256 (12%)
Query: 36 PDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP 95
P +P+++ MG S + FP L ++ ++K+E+ P +LE
Sbjct: 189 PGNFKIPSLESMGFAPSQL---NFPS-----------RLLKQKRIKKYEETRDFP-ALEE 233
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
T+ L + +FG +S+R + +K+ AT L ++ WR+FY + NF
Sbjct: 234 GTSRLGLHFRFGTISIREKARKARKLNAT---------YLNELIWRDFYAQI---LANFP 281
Query: 156 KMKGNKICCQVD---WDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
K+ G + D W NE+ EAW GKTGYP +DA MR+L G++H+ R VA F
Sbjct: 282 KVVGQSFRPKYDLIEWRNNEEEFEAWCQGKTGYPLVDAGMRELNATGYMHNRVRMLVASF 341
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L + L + W G++ F E LLD D A N G W W + S +FR++SP + KK D
Sbjct: 342 LCK-HLLIDWRWGEAYFAEKLLDFDLASNNGGWQWAAGSGTDAAPYFRIFSPESQLKKFD 400
Query: 272 KFELLLDADWAMNAGN 287
EL W G+
Sbjct: 401 A-ELKYVKKWVKEYGS 415
>gi|228908916|ref|ZP_04072746.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200]
gi|228850638|gb|EEM95462.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200]
Length = 476
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 121/238 (50%), Gaps = 14/238 (5%)
Query: 39 HLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTT 98
HL+PT+ ES + E A K +K ++K + + + PN + + +
Sbjct: 182 HLLPTIPWTSHIESM-----WEPTEEGAYKTFKKFFSSK--LASYSEGRDFPN--QNAHS 232
Query: 99 VLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+L+PYL FG +SV+L YH L K S + Q+ WREF Y + P
Sbjct: 233 MLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFAV 292
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ R AVA FL +
Sbjct: 293 YKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLVK 352
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 353 -HLLIPWQEGAKWFMDTLLDADIANNIMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|429103524|ref|ZP_19165498.1| Deoxyribodipyrimidine photolyase [Cronobacter turicensis 564]
gi|426290173|emb|CCJ91611.1| Deoxyribodipyrimidine photolyase [Cronobacter turicensis 564]
Length = 473
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 105/217 (48%), Gaps = 11/217 (5%)
Query: 59 FPGGETEALKRLEKSLANK--EWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
FP GE ALKRL + ++ K + P T++LSPYL G LS R H
Sbjct: 203 FPAGEEAALKRLRDFCRHDAGDYPEKRDFPAIR------GTSLLSPYLAIGVLSPRQCLH 256
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYL 175
L L ++ WREFY + P+ + + +V W +N+ +
Sbjct: 257 RLLTEHPRALEGGSGAVWLNELIWREFYRHLIVAWPHLCRHQPFIDWTARVAWQSNDAHF 316
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
+AW G TGYP +DA MRQ+ GW+H+ R A FL + DL + W G+ F L+D
Sbjct: 317 QAWCEGNTGYPIVDAAMRQMNATGWMHNRLRMITASFLVK-DLLIDWRRGERYFMSQLID 375
Query: 236 ADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D+A N G W W +++ +FR+++P G++ D
Sbjct: 376 GDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFD 412
>gi|222096635|ref|YP_002530692.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1]
gi|221240693|gb|ACM13403.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1]
Length = 476
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 121/238 (50%), Gaps = 14/238 (5%)
Query: 39 HLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTT 98
HL+PT+ ES + E A K +K ++K + + + PN + + +
Sbjct: 182 HLLPTIPWTSHMESI-----WEPTEEGAYKTFKKFFSSK--LVSYSEGRDFPN--QNAHS 232
Query: 99 VLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+L+PYL FG +SV+L YH L + S + Q WREF Y + P
Sbjct: 233 MLAPYLSFGQISVKLMYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYPFTV 292
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL +
Sbjct: 293 YKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 353 -HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|395773724|ref|ZP_10454239.1| deoxyribodipyrimidine photo-lyase [Streptomyces acidiscabies
84-104]
Length = 441
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 112/227 (49%), Gaps = 15/227 (6%)
Query: 48 GLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFG 107
G+ ++P PGGET RL L + V +E+ + + +T+ LSP++ FG
Sbjct: 168 GVASETLPRAAGPGGETAGRARLADWL--RTGVNAYEERHD--DLAGDATSKLSPHVHFG 223
Query: 108 CLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVD 167
LS H + + GP A+ + L Q+ WR+F+ V + P D +
Sbjct: 224 TLSPVEMVHRARTV--PGPGAE---AFLRQVAWRDFHRQVLAARP--DAEHADYRTKHDR 276
Query: 168 WDTNEKYLE---AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEE 224
W T + E AW G+TGYP +DA MRQL EGW+H+ R A FLT+ LY+ W
Sbjct: 277 WRTGKDAREDIAAWKEGRTGYPIVDAAMRQLLTEGWMHNRGRLLTASFLTK-TLYIDWRV 335
Query: 225 GQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
G + F LL+D D A N NW W + + + RV +PV K+ D
Sbjct: 336 GAAHFLSLLVDGDVANNQLNWQWTAGTGTDSRPNRVLNPVTQAKRYD 382
>gi|448321022|ref|ZP_21510503.1| deoxyribodipyrimidine photolyase [Natronococcus amylolyticus DSM
10524]
gi|445604422|gb|ELY58370.1| deoxyribodipyrimidine photolyase [Natronococcus amylolyticus DSM
10524]
Length = 472
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 127/263 (48%), Gaps = 17/263 (6%)
Query: 14 PKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALK-RLEK 72
P P P D L + +P +P++ E+G DE P P +A + RLE
Sbjct: 158 PAPAPTTDELADLEDASESEANP----IPSLSELGFDE---PDADPPAVTRDAARERLET 210
Query: 73 SLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPV 132
++ + ++ P + +T+ LS +LK+G + R Y E ++ L P
Sbjct: 211 FCSDA--IYRYADERDVPAA--GTTSRLSTHLKWGTIGPREVYVETERALEDAPDEDARE 266
Query: 133 SLLG---QIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFID 189
S++ Q+ +REFY + + P + ++W + L AW G+TGYP +D
Sbjct: 267 SVVAFRRQLAFREFYVHLLAFNPETVTEDFSGYESDLEWRNDPDELAAWRAGETGYPIVD 326
Query: 190 AIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLS 249
A MRQLR EGW+H+ R VA FLT+ DL + W EG + L D + + + W W +
Sbjct: 327 AGMRQLRSEGWVHNRVRMLVASFLTK-DLLVDWREGYDWYRHYLADHETSSDVAGWQWAA 385
Query: 250 ASAFFHQ-FFRVYSPVAFGKKTD 271
++ Q +FRV++P G++ D
Sbjct: 386 STGADAQPYFRVFNPTKQGREYD 408
>gi|301054669|ref|YP_003792880.1| deoxyribodipyrimidine photolyase [Bacillus cereus biovar anthracis
str. CI]
gi|300376838|gb|ADK05742.1| deoxyribodipyrimidine photolyase [Bacillus cereus biovar anthracis
str. CI]
Length = 476
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 121/238 (50%), Gaps = 14/238 (5%)
Query: 39 HLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTT 98
HL+PT+ ES + E A K +K ++K + + + PN + + +
Sbjct: 182 HLLPTIPWTSHMESI-----WEPTEEGAYKTFKKFFSSK--LVSYSEGRDFPN--QNAHS 232
Query: 99 VLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+L+PYL FG +SV+L YH L + S + Q WREF Y + P
Sbjct: 233 MLAPYLSFGQISVKLIYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYPFTV 292
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL +
Sbjct: 293 YKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 353 -HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|421499090|ref|ZP_15946150.1| deoxyribodipyrimidine photolyase [Aeromonas media WS]
gi|407181883|gb|EKE55880.1| deoxyribodipyrimidine photolyase [Aeromonas media WS]
Length = 474
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 110/218 (50%), Gaps = 9/218 (4%)
Query: 58 KFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHE 117
++P GE EAL+RL L ++ V + + P T++LSPYL G +S R
Sbjct: 202 RWPVGEAEALRRLHAFL--EQGVLDYGETRDFPAL--AGTSILSPYLAAGIVSPRQCVAA 257
Query: 118 LKKILATGPH--AKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKI-CCQVDWDTNEKY 174
L++ L P A+P L ++ WREFY + P + K + W +
Sbjct: 258 LQQRLGARPQSKAQPGFVWLNELIWREFYRHLLVLIPTLSMNRPFKPETVALPWSWDPDA 317
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
AW G+TGYP +DA MR L GW+H+ R VA FLT+ DL++ W G+ F L+
Sbjct: 318 FAAWCAGRTGYPIVDAAMRCLNATGWMHNRLRMIVASFLTK-DLHIHWRLGEDYFMSQLI 376
Query: 235 DADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
D D A N G W W + + A +FRV++P G++ D
Sbjct: 377 DGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFD 414
>gi|423562452|ref|ZP_17538728.1| hypothetical protein II5_01856 [Bacillus cereus MSX-A1]
gi|401200617|gb|EJR07502.1| hypothetical protein II5_01856 [Bacillus cereus MSX-A1]
Length = 476
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 121/238 (50%), Gaps = 14/238 (5%)
Query: 39 HLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTT 98
HL+PT+ ES + E A K +K ++K + + + PN + + +
Sbjct: 182 HLLPTIPWTSHIESI-----WEPTEEGAYKTFKKFFSSK--LASYSEGRDFPN--QNAHS 232
Query: 99 VLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+L+PYL FG +SV+L YH L K S + Q+ WREF Y + P
Sbjct: 233 MLAPYLSFGQISVKLMYHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTV 292
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ R AVA FL +
Sbjct: 293 YKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWKTGFMHNRTRMAVASFLVK 352
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 353 -HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|365087758|ref|ZP_09327644.1| deoxyribodipyrimidine photo-lyase [Acidovorax sp. NO-1]
gi|363417381|gb|EHL24461.1| deoxyribodipyrimidine photo-lyase [Acidovorax sp. NO-1]
Length = 496
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 14/236 (5%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
VPT++++G + +++ + P G A + + L V ++E P PS L
Sbjct: 201 VPTLQDLGFEPTALSQLRLPTGARGAQQLFDDFLGR---VERYEDTRNFPAVKGPS--YL 255
Query: 101 SPYLKFGCLSVRLFYHELKKILATG-PHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG 159
S +L+FG +S RL +++ G P A + L ++ WR+FY+ + P+
Sbjct: 256 SVHLRFGTISPRLLARTAHRLMQEGNPGA---TTWLSELIWRDFYFQILHHHPHVVGQSF 312
Query: 160 NKICCQVDWDTN---EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
+ W+T + AW G+TGYP +DA M Q+ G++H+ R VA FL +
Sbjct: 313 KPAYDAIAWETGPEADALFAAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVVASFLVK- 371
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL + W G++ F L D D A N G W W S+S Q +FR+++PV+ +K D
Sbjct: 372 DLGIDWRRGEAYFATHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVSQSEKFD 427
>gi|444352547|ref|YP_007388691.1| Deoxyribodipyrimidine photolyase (EC 4.1.99.3) [Enterobacter
aerogenes EA1509E]
gi|443903377|emb|CCG31151.1| Deoxyribodipyrimidine photolyase (EC 4.1.99.3) [Enterobacter
aerogenes EA1509E]
Length = 469
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 91/181 (50%), Gaps = 7/181 (3%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
T+ LSP L G LS R H L + + S L +I WREFY + P
Sbjct: 234 GTSRLSPCLAVGVLSPRQCLHRLLREQPGALDGEAGASWLNEIIWREFYRHLMVYYPKL- 292
Query: 156 KMKGNKICC---QVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
KG +V W +NE L AW G+TG+P +DA MRQL GW+H+ R VA F
Sbjct: 293 -CKGRPFVAWTDKVAWRSNEDELRAWQQGQTGFPVVDAAMRQLNATGWMHNRLRMIVASF 351
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
L + DL L W G+ F L+D D A N G W W +++ +FR+++P G+K D
Sbjct: 352 LAK-DLRLDWRHGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFD 410
Query: 272 K 272
K
Sbjct: 411 K 411
>gi|419957831|ref|ZP_14473897.1| deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp.
cloacae GS1]
gi|388607989|gb|EIM37193.1| deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp.
cloacae GS1]
Length = 470
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 112/218 (51%), Gaps = 13/218 (5%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FP E A+ RL + A + ++E P ++E T+ LS L G LS R H
Sbjct: 200 FPASEKAAIARLRQFCA--QGAVEYEARRDFP-AIE-GTSRLSACLALGALSPRQCLH-- 253
Query: 119 KKILATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKY 174
++LA P A L ++ WREFY + + P+ K + + QV W +NEK
Sbjct: 254 -RLLAEQPQALDGGAGAVWLNELIWREFYRHLMTYHPDLCKHRPFIRWTEQVQWQSNEKL 312
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
L+AW HG TG+P +DA MRQL GW+H+ R A FL + DL + W G+ F L+
Sbjct: 313 LKAWQHGLTGFPIVDAAMRQLNETGWMHNRLRMITASFLVK-DLLIDWRTGERYFISQLI 371
Query: 235 DADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D D A N G W W +++ +FR+++P G++ D
Sbjct: 372 DGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFD 409
>gi|292657024|ref|YP_003536921.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|448293624|ref|ZP_21483728.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|291372710|gb|ADE04937.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
gi|445569955|gb|ELY24522.1| deoxyribodipyrimidine photolyase [Haloferax volcanii DS2]
Length = 484
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 114/234 (48%), Gaps = 10/234 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+PT+ ++G +E S + P G A +RL A+ + ++ P +T+ L
Sbjct: 194 LPTISDLGFEEPSASVQ--PAGTEAARERLSAFCADA--IYRYADDRDYPT--RDATSRL 247
Query: 101 SPYLKFGCLSVRLFYHELKKIL--ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMK 158
S LKFG + +R Y G + Q+ WREFY V PN
Sbjct: 248 STDLKFGTIGIREVYAATAAAREGVGGERDESVEEFQSQLAWREFYAHVLRGHPNVVTEN 307
Query: 159 GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
+ + W +++ L AW G+TGYP +DA MRQLR E ++H+ R VA FLT+ DL
Sbjct: 308 YKEYEEDIAWRDDDEELAAWKAGETGYPIVDAGMRQLREEAYMHNRVRMIVASFLTK-DL 366
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
W G + F E L D D A + G W W +++ Q +FR+++P+ G++ D
Sbjct: 367 LCDWRHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYD 420
>gi|386042915|ref|YP_005961720.1| deoxyribodipyrimidine photo-lyase [Listeria monocytogenes 10403S]
gi|404409820|ref|YP_006695408.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC5850]
gi|345536149|gb|AEO05589.1| deoxyribodipyrimidine photo-lyase [Listeria monocytogenes 10403S]
gi|404229646|emb|CBY51050.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC5850]
Length = 467
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 119/235 (50%), Gaps = 11/235 (4%)
Query: 38 EHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPST 97
E+L P +E E + L GE A RL + K V ++K P T
Sbjct: 171 ENLFPKYEEQ-FAEMTCDLPILDSGEKTANTRLANFI--KHDVADYDKARDFPEL--DKT 225
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
+ LS YL+ G +SVR + L++ AT A ++ WR+FY ++ PN
Sbjct: 226 SHLSRYLRTGEISVRTIWQALQENEATEGRA----IFEKELCWRDFYNMIYVSFPNQKNE 281
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ ++W+ N ++ +AW GKTG+P +DA MRQL+ GW+H+ R A FLT+ D
Sbjct: 282 PIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTK-D 340
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L + W G+ F+++L+D D A N G W W +++ +FR+++P +K D
Sbjct: 341 LLIDWRFGEKYFQQMLIDYDSASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395
>gi|423551107|ref|ZP_17527434.1| hypothetical protein IGW_01738 [Bacillus cereus ISP3191]
gi|401188440|gb|EJQ95508.1| hypothetical protein IGW_01738 [Bacillus cereus ISP3191]
Length = 476
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 112/214 (52%), Gaps = 9/214 (4%)
Query: 63 ETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL---K 119
E A K +K ++K + + + PN + + ++L+PYL FG +SV+L YH L
Sbjct: 201 EEGAYKTFKKFFSSK--LVSYSEGRDFPN--QNAHSMLAPYLSFGQISVKLIYHYLINKS 256
Query: 120 KILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
+ S + Q WREF Y + P NK W+ E+ L W
Sbjct: 257 NEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYPFTVYKPLNKNFEHFPWNNEEELLRVWQ 316
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
G+TGYPFIDA MR+L G++H+ AR AVA FL + L + W+EG F + LLDAD A
Sbjct: 317 KGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK-HLLIPWQEGAKWFMDTLLDADIA 375
Query: 240 MNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
N W W++ S A +FR+++P+ G+K DK
Sbjct: 376 NNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|50120288|ref|YP_049455.1| deoxyribodipyrimidine photolyase [Pectobacterium atrosepticum
SCRI1043]
gi|49610814|emb|CAG74259.1| deoxyribodipyrimidine photolyase [Pectobacterium atrosepticum
SCRI1043]
Length = 497
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 116/245 (47%), Gaps = 14/245 (5%)
Query: 36 PDEHLVPTMKEMGLDESSIPLCK-----FPGGETEALKRLEKSLANKEWVRKFEKPNTAP 90
PD P L S P C+ FP GE AL++L + +E V+ +++ P
Sbjct: 183 PDARGEPINNTAELVPFSYPQCEVDSEDFPCGERAALQQLRRFC--REQVQDYDQQRDFP 240
Query: 91 NSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKP--PVSLLGQIYWREFYYVVG 148
P T+ LSPYL G +S R ++ L+ + + ++ WREFY +
Sbjct: 241 AL--PGTSKLSPYLALGIVSPRQCFNRLRAECPDMLERREGGAFTWFNELVWREFYRHLI 298
Query: 149 SDTPNFDKMKGNKICCQ-VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARH 207
P K + Q V W + + L AW GKTGYP +DA M QL GW+H+ R
Sbjct: 299 VSWPQLCKHRPFTAWTQWVKWRESPEDLTAWQQGKTGYPIVDAAMHQLNETGWMHNRLRM 358
Query: 208 AVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAF 266
A FL + DL + W EG+ F LLD D A N G W W +++ +FR+++P
Sbjct: 359 ICASFLVK-DLLIDWREGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 417
Query: 267 GKKTD 271
G++ D
Sbjct: 418 GERFD 422
>gi|333899133|ref|YP_004473006.1| deoxyribodipyrimidine photo-lyase [Pseudomonas fulva 12-X]
gi|333114398|gb|AEF20912.1| Deoxyribodipyrimidine photo-lyase [Pseudomonas fulva 12-X]
Length = 483
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 130/281 (46%), Gaps = 32/281 (11%)
Query: 1 MTYQKLVSVLESLPKPKPA----DDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPL 56
+ YQ+L + L L P A + A +P + G P + L
Sbjct: 156 VCYQRLHTALPKLVAPPKAQAKLEMAADPIPEQVAGFDTPSQALRDA------------- 202
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+P GE A +RL++ EW+ + P + P T+ LS YL G LS R H
Sbjct: 203 --WPAGEDAARERLQRFA--DEWIEDYHDNRDFP--IRPGTSQLSAYLAAGVLSPRQCLH 256
Query: 117 ELKKILATGPH----AKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQ-VDWDTN 171
+ A G + V+ + ++ WREFY + P+ + + + + W
Sbjct: 257 --AALNANGGEFENGNQGAVTWINELIWREFYAHILVGYPHVSMARAFRPETEALPWRNA 314
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
K L+AW G+TG P IDA MRQL GW+H+ R VA FLT+ +L + W EG+ F
Sbjct: 315 AKDLQAWQEGRTGIPIIDAAMRQLLETGWMHNRLRMVVAMFLTK-NLLIDWREGERFFMR 373
Query: 232 LLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTD 271
L+D D A N G W W +++ +FR+++P++ ++ D
Sbjct: 374 HLIDGDLAANNGGWQWSASTGTDSVPYFRIFNPISQSQRFD 414
>gi|257416128|ref|ZP_05593122.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ARO1/DG]
gi|257157956|gb|EEU87916.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ARO1/DG]
Length = 477
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 10/225 (4%)
Query: 48 GLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFG 107
G + IPL + GE A + L + K +R +E P + T+ LS +L+ G
Sbjct: 185 GEQIARIPLTHYSVGEKTARRCLNTFIDQK--LRSYENKRDFP--YQDQTSHLSTFLRTG 240
Query: 108 CLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVD 167
LS+R + EL A+ P + + ++ WR+FY ++ S P + + +
Sbjct: 241 ELSIRTIWQEL----ASAPSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQ 296
Query: 168 WDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQS 227
W + + W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+
Sbjct: 297 WTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEK 355
Query: 228 VFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
F+++L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 356 YFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 400
>gi|269965348|ref|ZP_06179468.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
gi|269829994|gb|EEZ84223.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 40B]
Length = 471
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
Query: 97 TTVLSPYLKFGCLS-----VRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDT 151
T+ LSPYL G LS RL+ + L G + L +I WREFY +
Sbjct: 238 TSQLSPYLAIGALSPRQCIARLYAENQQNDLTEGK-----ATWLSEIIWREFYQHLLVFE 292
Query: 152 PNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVA 210
P K KG ++ W +EK E W G TGYP +DA MRQL GW+H+ R VA
Sbjct: 293 PKLVKGKGFIDWEDKIQWSYDEKAFERWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVA 352
Query: 211 CFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKK 269
FLT+ DL++ W G++ F L+D D+A N G W W +++ Q +FR+++P++ G+K
Sbjct: 353 SFLTK-DLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEK 411
Query: 270 TD 271
D
Sbjct: 412 FD 413
>gi|381405296|ref|ZP_09929980.1| deoxyribodipyrimidine photolyase [Pantoea sp. Sc1]
gi|380738495|gb|EIB99558.1| deoxyribodipyrimidine photolyase [Pantoea sp. Sc1]
Length = 474
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 115/218 (52%), Gaps = 13/218 (5%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FP GET ALKRL K+ V + P +L+ +T+ LS YL G LS R H
Sbjct: 203 FPPGETAALKRLRHFA--KQPVLDYPDKRDLP-ALD-ATSRLSVYLATGVLSPRQCLH-- 256
Query: 119 KKILATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKY 174
++L P + L ++ WREFY + P+ + K +V+W +NE +
Sbjct: 257 -RVLHEHPDVLDNSRAFTWLNELIWREFYRHLLVAYPSLCRHKPFVDWTHRVEWQSNEAH 315
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
+AW GKTG+P +DA MRQ++ GW+H+ R A FL + DL + W EG+ F + L+
Sbjct: 316 FDAWKAGKTGFPIVDAAMRQMKEMGWMHNRLRMITASFLVK-DLLIDWREGERYFMQQLI 374
Query: 235 DADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D D A N G W W +++ +FR+++P G++ D
Sbjct: 375 DGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFD 412
>gi|269104447|ref|ZP_06157143.1| deoxyribodipyrimidine photolyase [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161087|gb|EEZ39584.1| deoxyribodipyrimidine photolyase [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 494
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 103/188 (54%), Gaps = 13/188 (6%)
Query: 92 SLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG------QIYWREFYY 145
SLE T+ LSPYL G LSVR LK + P G ++ WREFY+
Sbjct: 251 SLE-GTSTLSPYLAIGALSVRQC---LKAVQQVDPSCLEINKECGGFVWVNELIWREFYH 306
Query: 146 VVGSDTPNFDKMKGNKICCQ-VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHL 204
+ ++ + K + + Q V W+ + YL+AW GKTG+P +DA MRQL+ GW+H+
Sbjct: 307 HLMAEYKHLCKGQPFQAYTQYVTWNEDSHYLKAWQQGKTGFPIVDAAMRQLQQTGWMHNR 366
Query: 205 ARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSP 263
R A FLT+ DL L W G+ F + L+D D+A N G W W +++ Q +FRV++P
Sbjct: 367 LRMITASFLTK-DLLLHWHHGERWFLQHLIDGDFASNNGGWQWAASTGTDAQPYFRVFNP 425
Query: 264 VAFGKKTD 271
G++ D
Sbjct: 426 TTQGERFD 433
>gi|452949001|gb|EME54472.1| deoxyribodipyrimidine photo-lyase [Amycolatopsis decaplanina DSM
44594]
Length = 449
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 118/231 (51%), Gaps = 20/231 (8%)
Query: 42 PTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLS 101
P++K M L E GE AL+R + L + + +++ P+ P TT LS
Sbjct: 184 PSLKGMELPEP---------GEKAALERWHEFLDDG--LETYDEDRDRPD--RPGTTRLS 230
Query: 102 PYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNK 161
PYL++GC+ R +L TG SL G+ WREF+ V P + +
Sbjct: 231 PYLRWGCVHPRTLLADL-----TGNEGSGAKSLRGEFAWREFHADVLWHRPETARKNYDS 285
Query: 162 ICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLS 221
++ +++++ + W G+TG+P +DA MRQL EGW+H+ R VA FL + DL+L
Sbjct: 286 RFDAMEHESDDEAFQRWCEGRTGFPIVDAGMRQLLAEGWMHNRVRMIVASFLVK-DLHLP 344
Query: 222 WEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
W G F + L+D D A N NW W++ S +FR+++P G+K D
Sbjct: 345 WWLGARHFMKHLVDGDLASNQLNWQWVAGSGTDAAPYFRIFNPTTQGEKFD 395
>gi|402556671|ref|YP_006597942.1| deoxyribodipyrimidine photolyase [Bacillus cereus FRI-35]
gi|401797881|gb|AFQ11740.1| deoxyribodipyrimidine photolyase [Bacillus cereus FRI-35]
Length = 476
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 97/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L +H L + S + Q WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLMFHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ E+ L W GKTGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKNFEHFPWNNEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|91223275|ref|ZP_01258541.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
gi|91192088|gb|EAS78351.1| deoxyribodipyrimidine photolyase [Vibrio alginolyticus 12G01]
Length = 471
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
Query: 97 TTVLSPYLKFGCLS-----VRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDT 151
T+ LSPYL G LS RL+ + L G + L +I WREFY +
Sbjct: 238 TSQLSPYLAIGALSPRQCIARLYAENQQNDLTEGK-----ATWLSEIIWREFYQHLLVFE 292
Query: 152 PNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVA 210
P K KG ++ W +EK E W G TGYP +DA MRQL GW+H+ R VA
Sbjct: 293 PKLVKGKGFIDWEDKIQWSYDEKAFERWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMIVA 352
Query: 211 CFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKK 269
FLT+ DL++ W G++ F L+D D+A N G W W +++ Q +FR+++P++ G+K
Sbjct: 353 SFLTK-DLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEK 411
Query: 270 TD 271
D
Sbjct: 412 FD 413
>gi|302864753|ref|YP_003833390.1| deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC
27029]
gi|302567612|gb|ADL43814.1| Deoxyribodipyrimidine photo-lyase [Micromonospora aurantiaca ATCC
27029]
Length = 440
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 123/254 (48%), Gaps = 27/254 (10%)
Query: 28 RECQGILHPDEHLVPTMKEM--GLDESSIP---LCKFP----GGETEALKRLEKSLANKE 78
R QG+ DE P + G+D +P P GGET A +RL
Sbjct: 152 RAWQGVRWRDELAAPKRVRLPDGVDPGRLPDPPKGDSPDAAVGGETVARRRL------TA 205
Query: 79 WVRKFEKPNTAPNSLE-PSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQ 137
W+ ++ + + + T+ LSPYL+FGC+S L G P + Q
Sbjct: 206 WLPTLDRYDDIHDDMAGDETSRLSPYLRFGCVS------PLAVANRAGDRDGP---FVRQ 256
Query: 138 IYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRL 197
+ WR+FY+ V + P+ + + + DW + +AW+ G+TG P +DA MRQLR
Sbjct: 257 LCWRDFYHQVVAGFPDLSTVAYRR-GAREDWRDDPHAFDAWAEGRTGMPIVDAGMRQLRA 315
Query: 198 EGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQF 257
EGW+H+ AR A +LT+ L L W G +F LLD D N+GNW W++ + +
Sbjct: 316 EGWMHNRARLITAGYLTK-HLGLDWRPGLEIFFRWLLDGDRVNNSGNWQWVAGTGNDTRP 374
Query: 258 FRVYSPVAFGKKTD 271
+R ++PV ++ D
Sbjct: 375 YRGFNPVRQAERYD 388
>gi|429107907|ref|ZP_19169776.1| Deoxyribodipyrimidine photolyase [Cronobacter malonaticus 681]
gi|426294630|emb|CCJ95889.1| Deoxyribodipyrimidine photolyase [Cronobacter malonaticus 681]
Length = 473
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 105/217 (48%), Gaps = 11/217 (5%)
Query: 59 FPGGETEALKRLEK--SLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
FP GE ALKRL + A ++ K + P T++LSPYL G LS R H
Sbjct: 203 FPAGEEAALKRLREFCQTAADDYQEKRDFPAIR------GTSLLSPYLAIGVLSPRQCLH 256
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYL 175
L L ++ WREFY + P+ + + +V W ++ +
Sbjct: 257 RLLTEHPRALEGGSGAVWLNELIWREFYRHLIVAWPHLCRHQPFIDWTARVAWQQSDAHF 316
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
+AW G TGYP +DA MRQ+ GW+H+ R A FL + DL + W G+ F L+D
Sbjct: 317 QAWCEGNTGYPIVDAAMRQMNATGWMHNRLRMITASFLVK-DLLVDWRRGERYFMSQLID 375
Query: 236 ADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D+A N G W W +++ +FR+++P G++ D
Sbjct: 376 GDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFD 412
>gi|68534519|gb|AAH98514.1| Cryptochrome DASH [Danio rerio]
Length = 520
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 14/252 (5%)
Query: 2 TYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPL--CK- 58
Y + +E+ + +P P + G+ +E +PT +G E PL C+
Sbjct: 158 VYTQFRKAVEAQGRVRPVLSTPEQVKSPPSGL---EEGPIPTFDSLGQTE---PLDDCRS 211
Query: 59 -FP--GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY 115
FP GGETEAL RL+ + V +++ ++ ST SP+L GC+S R Y
Sbjct: 212 AFPCRGGETEALARLKHYFWDTNAVATYKETRNGMIGVDFSTK-FSPWLALGCISPRYIY 270
Query: 116 HELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
++KK + ++ ++ WR+++ V N V W+T+ K
Sbjct: 271 EQIKKYEVERTANQSTYWVIFELLWRDYFKFVALKYGNRIFYMNGLQDKHVPWNTDMKMF 330
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
+AW G+TG PF+DA MR+L L G++ + R VA FLT+ DL L W G FE LL+D
Sbjct: 331 DAWKEGRTGVPFVDANMRELALTGFMSNRGRQNVASFLTK-DLGLDWRLGAEWFEYLLVD 389
Query: 236 ADWAMNAGNWMW 247
D N GNW++
Sbjct: 390 HDVCSNYGNWLY 401
>gi|300860779|ref|ZP_07106866.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
TUSoD Ef11]
gi|422733543|ref|ZP_16789845.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0645]
gi|422739032|ref|ZP_16794215.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2141]
gi|428767034|ref|YP_007153145.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis str.
Symbioflor 1]
gi|300849818|gb|EFK77568.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
TUSoD Ef11]
gi|315145075|gb|EFT89091.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2141]
gi|315160408|gb|EFU04425.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0645]
gi|427185207|emb|CCO72431.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis str.
Symbioflor 1]
Length = 477
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 10/221 (4%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
+ IPL + GE A +RL + K ++ +E P + T+ LS +L+ G LS+
Sbjct: 189 ARIPLTHYSVGEETARRRLNTFIDQK--LQSYENKRDFP--YQDQTSHLSTFLRTGELSI 244
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R + EL A+ P + + ++ WR+FY ++ S P + + + W +
Sbjct: 245 RTIWQEL----ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQWIND 300
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+ F++
Sbjct: 301 PEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEKYFQK 359
Query: 232 LLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 360 MLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 400
>gi|448402770|ref|ZP_21572126.1| deoxyribodipyrimidine photolyase [Haloterrigena limicola JCM 13563]
gi|445664862|gb|ELZ17552.1| deoxyribodipyrimidine photolyase [Haloterrigena limicola JCM 13563]
Length = 465
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 114/236 (48%), Gaps = 13/236 (5%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALK-RLEKSLANKEWVRKFEKPNTAPNSLEPSTTV 99
+P++ ++G DE P P T A + R+ A + ++ A E T+
Sbjct: 175 IPSLADLGFDE---PEATPPTVTTAAARERVAAFCAGPIYDYAAQRDYPA----ESGTSR 227
Query: 100 LSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFDK 156
LSP+LK+G + R Y ++ P S+ Q+ WREFY V P
Sbjct: 228 LSPHLKWGTIGPRELYATTERAAGRAPTDDDRESVRAFQRQLAWREFYAHVLEFNPETVT 287
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
+ +++W + LEAW G+TGYP +DA MRQLR EGW+H+ R VA FLT+
Sbjct: 288 ENFSGYENEIEWRNDPAELEAWKAGETGYPIVDAGMRQLRAEGWMHNRVRMLVASFLTK- 346
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL W G F L D D A + G W W ++ Q +FRV++P+ G++ D
Sbjct: 347 DLLTDWRAGYDWFRAKLADHDTANDVGGWQWAGSTGTDAQPYFRVFNPMKQGREYD 402
>gi|217965318|ref|YP_002350996.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HCC23]
gi|386007316|ref|YP_005925594.1| phr [Listeria monocytogenes L99]
gi|386025906|ref|YP_005946682.1| putative deoxyribodipyrimidine photolyase [Listeria monocytogenes
M7]
gi|217334588|gb|ACK40382.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HCC23]
gi|307570126|emb|CAR83305.1| phr [Listeria monocytogenes L99]
gi|336022487|gb|AEH91624.1| putative deoxyribodipyrimidine photolyase [Listeria monocytogenes
M7]
Length = 467
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 119/235 (50%), Gaps = 11/235 (4%)
Query: 38 EHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPST 97
E L P +E E + L GE A RL + K + ++K P T
Sbjct: 171 ESLFPKYEEQ-FAEMTCDLPILDSGERAANTRLANFI--KHDIADYDKARDFPEL--DKT 225
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
+ LS YL+ G +S+R + L++ AT A + ++ WR+FY ++ PN
Sbjct: 226 SHLSRYLRTGEISIRTVWQALQETKATEGRA----TFEKELCWRDFYNMIYVSFPNQKNE 281
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ ++W+ N ++ +AW GKTG+P +DA MRQL+ GW+H+ R A FLT+ D
Sbjct: 282 PIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK-D 340
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTD 271
L + W G+ F+++L+D D A N G W W +++ +FR+++P +K D
Sbjct: 341 LLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395
>gi|384518625|ref|YP_005705930.1| deoxyribodipyrimidine photo-lyase [Enterococcus faecalis 62]
gi|323480758|gb|ADX80197.1| deoxyribodipyrimidine photo-lyase [Enterococcus faecalis 62]
Length = 477
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 10/221 (4%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
+ IPL + GE A +RL + K ++ +E P + T+ LS +L+ G LS+
Sbjct: 189 ARIPLTHYSVGEETARRRLNTFIDQK--LQSYENKRDFP--YQDQTSHLSTFLRTGELSI 244
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R + EL A+ P + + ++ WR+FY ++ S P + + + W +
Sbjct: 245 RTIWQEL----ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQWIND 300
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+ F++
Sbjct: 301 PEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEKYFQK 359
Query: 232 LLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTD 271
+L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 360 MLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 400
>gi|16802631|ref|NP_464116.1| hypothetical protein lmo0588 [Listeria monocytogenes EGD-e]
gi|386049515|ref|YP_005967506.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
R2-561]
gi|404283027|ref|YP_006683924.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2372]
gi|405757582|ref|YP_006686858.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2479]
gi|16409964|emb|CAC98667.1| lmo0588 [Listeria monocytogenes EGD-e]
gi|346423361|gb|AEO24886.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
R2-561]
gi|404232529|emb|CBY53932.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2372]
gi|404235464|emb|CBY56866.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2479]
Length = 467
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 119/235 (50%), Gaps = 11/235 (4%)
Query: 38 EHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPST 97
E+L P +E E + L GE A RL + K V ++K P T
Sbjct: 171 ENLFPKYEEQ-FAEMTCDLPILDSGEKTANTRLANFI--KHDVADYDKARDFPEL--DKT 225
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
+ LS YL+ G +SVR + L++ AT A ++ WR+FY ++ PN
Sbjct: 226 SHLSRYLRTGEISVRTIWQALQENEATEGRA----IFEKELCWRDFYNMIYVSFPNQKNE 281
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ ++W+ N ++ +AW GKTG+P +DA MRQL+ GW+H+ R A FLT+ D
Sbjct: 282 PIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTK-D 340
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L + W G+ F+++L+D D A N G W W +++ +FR+++P +K D
Sbjct: 341 LLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395
>gi|238893748|ref|YP_002918482.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|402781760|ref|YP_006637306.1| Deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|238546064|dbj|BAH62415.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|402542633|gb|AFQ66782.1| Deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae 1084]
Length = 480
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 109/240 (45%), Gaps = 19/240 (7%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRL----EKSLANKEWVRKFEKPNTAPNSLEPS 96
P + E+ ++ F E AL RL +++ A+ E R F
Sbjct: 183 APPLPELNYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVE--------G 234
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSP L G LS R H L + L ++ WREFY + P
Sbjct: 235 TSRLSPCLAIGVLSPRQCLHRLLTEHPAALDGGAGATWLNELIWREFYRHLMVYYPKL-- 292
Query: 157 MKGNKICC---QVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
KG +V W E L+AW G+TG+P +DA MRQL GW+H+ R VA FL
Sbjct: 293 CKGRPFTAWTDKVAWRAEEAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFL 352
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
T+ DL L W G+ F L+D D A N G W W +++ +FR+++P G+K DK
Sbjct: 353 TK-DLRLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDK 411
>gi|307151428|ref|YP_003886812.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822]
gi|306981656|gb|ADN13537.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7822]
Length = 476
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 118/234 (50%), Gaps = 10/234 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+PT K++G + PL PG ET A KRLE+ ++ + ++++ P T+ L
Sbjct: 190 LPTAKKLGYAWEN-PLLLDPG-ETAAKKRLEEFCSSA--INEYQEQRNFPAV--DGTSRL 243
Query: 101 SPYLKFGCLSVRLFYHELKKIL--ATGPHAKPPVSLLGQ-IYWREFYYVVGSDTPNFDKM 157
S LKFG + +R + ++ + A+ + Q + WREFY P +
Sbjct: 244 SAALKFGAIGIRTVWKATLEVYENSRSDEARKSIETWQQELAWREFYQHCMYFFPELAEG 303
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
K W NE Y +AW GKTGYP +DA MRQL W+H+ R VA FLT+ D
Sbjct: 304 SYRKDFRSFPWQNNEDYFQAWCEGKTGYPIVDAAMRQLNETAWMHNRCRMIVASFLTK-D 362
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
L ++W+ G+ F + L D D + N G W W ++S + R+++P + +K D
Sbjct: 363 LIINWQWGEKYFMQKLYDGDLSANNGGWQWSASSGMDPKPLRIFNPASQAQKFD 416
>gi|258654813|ref|YP_003203969.1| deoxyribodipyrimidine photo-lyase [Nakamurella multipartita DSM
44233]
gi|258558038|gb|ACV80980.1| Deoxyribodipyrimidine photo-lyase [Nakamurella multipartita DSM
44233]
Length = 459
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 98/182 (53%), Gaps = 10/182 (5%)
Query: 94 EPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPN 153
P T+ +S YLK+G + R +L +TG S ++ WREFY P
Sbjct: 227 RPGTSHMSVYLKWGSIHPRTLLADLAGRRSTGA-----ASYRRELAWREFYADSVFHLPE 281
Query: 154 FDKMKGNKICCQVDWDTN---EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVA 210
+ + ++ WD+ E+ EAW G+TGYPFIDA MRQL EGW+H+ R A A
Sbjct: 282 SVWTSVDPVIDRMAWDSGQPAEERFEAWRAGRTGYPFIDAGMRQLLAEGWMHNRLRMATA 341
Query: 211 CFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKK 269
FL + DL+L W+ G F E L+D D+A N W W++ S A FFR+++P+ G+K
Sbjct: 342 SFLIK-DLHLPWQRGAEHFLEHLVDGDYASNNHGWQWVAGSGAQAAPFFRIFNPLTQGEK 400
Query: 270 TD 271
D
Sbjct: 401 FD 402
>gi|374632521|ref|ZP_09704895.1| deoxyribodipyrimidine photolyase [Metallosphaera yellowstonensis
MK1]
gi|373526351|gb|EHP71131.1| deoxyribodipyrimidine photolyase [Metallosphaera yellowstonensis
MK1]
Length = 438
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 113/213 (53%), Gaps = 21/213 (9%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
F GG EALK LE++ + +E+ + + TT LSPY+KFG LS+R +H L
Sbjct: 187 FKGGRKEALKILERAKSIN-----YEQRD---HPYLDQTTHLSPYIKFGVLSIREVFHNL 238
Query: 119 KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ L Q+YWR+FY ++ P + + V W+ + LEAW
Sbjct: 239 DR-----------EDLRRQLYWRDFYTLLAHYNPQVFRGPFKREYYCVRWENDPVKLEAW 287
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
G+TGYP +DA MR+L+ G+I+ R V+ FL + L++ W G+ F L+D D
Sbjct: 288 KEGRTGYPIVDAGMRELKSTGYINGRVRLLVSSFLVK-ILHVDWRIGERYFATQLVDYDP 346
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++N GNW W++++ + FRV++P +K D
Sbjct: 347 SVNNGNWQWVASTGVDY-MFRVFNPWLQQRKFD 378
>gi|241204354|ref|YP_002975450.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240858244|gb|ACS55911.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 482
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 128/273 (46%), Gaps = 13/273 (4%)
Query: 2 TYQKLVSVLESLPKPKPADDAPTSLPRECQ--GILHPDEHLVPTMKEMGLDESSIPLCKF 59
Y LE +P+P DAP L Q + L+PT + D + +
Sbjct: 152 VYTPFWRALEGGGEPEPPLDAPAKLRLASQPKSEVLGSWKLLPTKPDWAGDFVDL----W 207
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
GE A +RL + + + +++ P P+T++LSP+L G +S + +
Sbjct: 208 TPGEEGAQQRLHVFVEDA--LEGYKENRDYP--ARPATSMLSPHLALGEISPARIWDATR 263
Query: 120 KILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
+ P A V +I WREF Y + P N +W N EAW
Sbjct: 264 GLSQRVPAADI-VHFREEIAWREFSYHLLFHFPRLASANWNDRFDGFEWRNNSGDFEAWR 322
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
G TGYP +DA MRQL GW+H+ R VA FL + DL + W G++ F + L+DAD A
Sbjct: 323 RGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFLIK-DLMIDWRRGEAWFRDTLVDADPA 381
Query: 240 MNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
NA +W W++ S A FFR+++PV G+K D
Sbjct: 382 NNAASWQWVAGSGADASPFFRIFNPVLQGEKFD 414
>gi|145300128|ref|YP_001142969.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418357828|ref|ZP_12960518.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142852900|gb|ABO91221.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356689067|gb|EHI53615.1| deoxyribodipyrimidine photolyase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 473
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 109/221 (49%), Gaps = 9/221 (4%)
Query: 55 PLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
P ++P GE EA +RL L V +E+ P + T++LSPYL G +S R
Sbjct: 199 PDPRWPVGEAEAQRRLHAFLEPA--VLDYEETRDFPA--QAGTSILSPYLAAGIISPRQC 254
Query: 115 YHELKKILATGPHAK--PPVSLLGQIYWREFYYVVGSDTPNFD-KMKGNKICCQVDWDTN 171
L++ L P +K P L ++ WREFY + P + + W +
Sbjct: 255 VGVLQQRLGHRPQSKAQPGFVWLNELVWREFYRHLLVLVPTLSMNLPFKPETATLPWSWD 314
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
AW G+TGYP +DA MR L GW+H+ R VA FLT+ DL++ W G+ F
Sbjct: 315 PVAFAAWCEGRTGYPIVDAAMRCLHATGWMHNRLRMIVASFLTK-DLHIHWRLGEDYFMS 373
Query: 232 LLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
L+D D A N G W W + + A +FRV++P G++ D
Sbjct: 374 QLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFD 414
>gi|97047702|sp|Q4KML2.2|CRYD_DANRE RecName: Full=Cryptochrome DASH; AltName: Full=Protein CRY-DASH;
Short=zCRY-DASH
Length = 520
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 14/252 (5%)
Query: 2 TYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPL--CK- 58
Y + +E+ + +P P + G+ +E +PT +G E PL C+
Sbjct: 158 VYTQFRKAVEAQGRVRPVLSTPEQVKSPPSGL---EEGPIPTFDSLGQTE---PLDDCRS 211
Query: 59 -FP--GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY 115
FP GGETEAL RL+ + V +++ ++ ST SP+L GC+S R Y
Sbjct: 212 AFPCRGGETEALARLKHYFWDTNAVATYKETRNGMIGVDFSTK-FSPWLALGCISPRYIY 270
Query: 116 HELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
++KK + ++ ++ WR+++ V N V W+T+ K
Sbjct: 271 EQIKKYEVERTANQSTYWVIFELLWRDYFKFVALKYGNRIFYMNGLQDKHVPWNTDMKMF 330
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
+AW G+TG PF+DA MR+L L G++ + R VA FLT+ DL L W G FE LL+D
Sbjct: 331 DAWKEGRTGVPFVDANMRELALTGFMSNRGRQNVASFLTK-DLGLDWRLGAEWFEYLLVD 389
Query: 236 ADWAMNAGNWMW 247
D N GNW++
Sbjct: 390 HDVCSNYGNWLY 401
>gi|365138980|ref|ZP_09345561.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 4_1_44FAA]
gi|363654665|gb|EHL93554.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. 4_1_44FAA]
Length = 480
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 109/240 (45%), Gaps = 19/240 (7%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRL----EKSLANKEWVRKFEKPNTAPNSLEPS 96
P + E+ ++ F E AL RL +++ A+ E R F
Sbjct: 183 APPLPELNYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVE--------G 234
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSP L G LS R H L + L ++ WREFY + P
Sbjct: 235 TSRLSPCLAIGVLSPRQCLHRLLTEHPAALDGGAGATWLNELIWREFYRHLMVYYPKL-- 292
Query: 157 MKGNKICC---QVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
KG +V W E L+AW G+TG+P +DA MRQL GW+H+ R VA FL
Sbjct: 293 CKGRPFTAWTDKVAWRAEEAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFL 352
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
T+ DL L W G+ F L+D D A N G W W +++ +FR+++P G+K DK
Sbjct: 353 TK-DLRLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDK 411
>gi|189502200|ref|YP_001957917.1| hypothetical protein Aasi_0813 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497641|gb|ACE06188.1| hypothetical protein Aasi_0813 [Candidatus Amoebophilus asiaticus
5a2]
Length = 486
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 102/177 (57%), Gaps = 3/177 (1%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPP-VSLLGQIYWREFYYVVGSDTPNFD 155
++ LSPYL++G +S + ++E+ + P + + L +I WREF Y + P+
Sbjct: 239 SSQLSPYLRWGQISAKKIFNEVIHTMERDPTIQQDGNTFLKEIGWREFSYYLLYHHPSMQ 298
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
++ NK ++ N LE W G TG+P IDA MRQL LEGW+ + R VA FL +
Sbjct: 299 EVPLNKRFQDFPYENNLSLLEKWQKGTTGFPIIDAGMRQLWLEGWMPNRLRMIVASFLIK 358
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
DL ++W+ GQ+ F + L+DAD A NA +W W++ +FR+++P+ GKK D
Sbjct: 359 -DLLINWQFGQAWFIDTLVDADPANNANSWQWVAGCGTDASPYFRIFNPITQGKKFD 414
>gi|229185362|ref|ZP_04312545.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1]
gi|376267016|ref|YP_005119728.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F837/76]
gi|228598095|gb|EEK55732.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1]
gi|364512816|gb|AEW56215.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F837/76]
Length = 476
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L YH L + K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYMLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ ++ L W G+TGYPFIDA MR+L G++H+ R AVA FL
Sbjct: 292 AYKPLNKSFEHFPWNNEKELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLI 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|118478461|ref|YP_895612.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis
str. Al Hakam]
gi|196042568|ref|ZP_03109807.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
03BB108]
gi|118417686|gb|ABK86105.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis
str. Al Hakam]
gi|196026052|gb|EDX64720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
03BB108]
Length = 476
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 98/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL FG +SV+L YH L + K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFGQISVKLIYHYLINKSTESQCSLFEKQVNSFIRQLIWREFSYYMLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ ++ L W G+TGYPFIDA MR+L G++H+ R AVA FL
Sbjct: 292 AYKPLNKSFEHFPWNNEKELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLI 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|114564201|ref|YP_751715.1| deoxyribodipyrimidine photo-lyase [Shewanella frigidimarina NCIMB
400]
gi|114335494|gb|ABI72876.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella frigidimarina
NCIMB 400]
Length = 477
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 123/256 (48%), Gaps = 22/256 (8%)
Query: 23 PTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRK 82
P ++P +L +V +M ++ +P GE A + L++ LAN+ V
Sbjct: 172 PVAVPAPIAAVLATPNEVVFNCYKMSSEQ-------WPAGEGAAKRILDQFLANQ--VAD 222
Query: 83 FEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAK-----PPVSLLGQ 137
++ P +LE T+ LSP+L G +S R + ILA P A P + L +
Sbjct: 223 YQAERDFP-ALE-GTSRLSPFLAIGVISSR---QCVAAILARYPQALVEDTCPAKTWLNE 277
Query: 138 IYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLR 196
+ WREFY + P N++ + W N AW G+TGYP IDA MRQL
Sbjct: 278 LIWREFYRHLLVAFPRLSMNHNFNELGDGIVWRNNLAEFTAWCDGQTGYPIIDAAMRQLN 337
Query: 197 LEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ 256
GW+H+ R VA FLT+ L + W G+ F + L+D D A N G W W + + Q
Sbjct: 338 QTGWMHNRLRMVVASFLTK-HLLVDWRWGERYFRQKLIDGDLAANNGGWQWSAGTGCDAQ 396
Query: 257 -FFRVYSPVAFGKKTD 271
+FRV++P+ K D
Sbjct: 397 PYFRVFNPMTQSSKFD 412
>gi|428213636|ref|YP_007086780.1| deoxyribodipyrimidine photolyase [Oscillatoria acuminata PCC 6304]
gi|428002017|gb|AFY82860.1| deoxyribodipyrimidine photolyase [Oscillatoria acuminata PCC 6304]
Length = 479
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 129/270 (47%), Gaps = 17/270 (6%)
Query: 9 VLESLPKPKPADDAPTSLPR-ECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEAL 67
+ ++ +P P + SL E + + E +PT+K++GL + PL PG E+ A
Sbjct: 157 IRQTKAEPAPGLEQAISLTEAEQERAKNAGEVALPTLKDLGLSWDN-PLMLEPG-ESAAR 214
Query: 68 KRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPH 127
+LE+ + + +++ P P T++LS LKFG + +R ++ L
Sbjct: 215 SQLEE--FSDRTIYDYDEQRNFPAV--PGTSLLSAALKFGAIGIRTVWN---ATLNAAEQ 267
Query: 128 AKPPVSLLG------QIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
+ + G ++ WREFY P W+ NE+ AW G
Sbjct: 268 CRSDETRKGVQTWQQELAWREFYQQALYHFPELATGPYRDTWKDFPWENNEELFHAWCQG 327
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
+TGYP +DA MRQL GW+H+ R VA FLT+ DL ++W+ G+ F + L D D A N
Sbjct: 328 QTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTK-DLIINWQWGEQYFMQKLYDGDLAAN 386
Query: 242 AGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
G W W ++S + R+++P +K D
Sbjct: 387 NGGWQWSASSGMDPKPLRIFNPTTQTQKFD 416
>gi|422021424|ref|ZP_16367936.1| deoxyribodipyrimidine photolyase [Providencia sneebia DSM 19967]
gi|414099282|gb|EKT60925.1| deoxyribodipyrimidine photolyase [Providencia sneebia DSM 19967]
Length = 477
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 116/229 (50%), Gaps = 16/229 (6%)
Query: 50 DESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCL 109
D+ I C FP GE+ A ++L + +E ++ P ++E T++LSPYL G L
Sbjct: 192 DDIEIAAC-FPVGESAARQKLRQFC--REKAENYQIDRDIP-AIE-GTSLLSPYLAIGVL 246
Query: 110 SVRLFYHELKKILATGPHA-----KPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICC 164
S R L ++L P+ L ++ WREFYY + P+ + K
Sbjct: 247 SPR---QCLNRLLVENPNVLDFPDSGAFCWLNELIWREFYYHLLVAFPHLCRDKPFIAWT 303
Query: 165 Q-VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWE 223
+ W+T+ LEAW G TGYP +DA MRQL GW+H+ R A FL + DL + W
Sbjct: 304 NYIHWNTSSADLEAWKKGLTGYPIVDAAMRQLNTLGWMHNRLRMITASFLVK-DLLIDWR 362
Query: 224 EGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
+G+ F + L+D A N G W W +++ +FR+++P GKK D
Sbjct: 363 QGEQYFMQQLIDGTLAANNGGWQWSASTGIDASPWFRIFNPTTQGKKFD 411
>gi|254991721|ref|ZP_05273911.1| DNA photolyase [Listeria monocytogenes FSL J2-064]
Length = 467
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 115/221 (52%), Gaps = 12/221 (5%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
S +P+ GE A RL + K V ++K P T+ LS YL+ G +S+
Sbjct: 186 SDLPILDI--GERAANTRLANFI--KHDVADYDKARDFPEL--DKTSHLSRYLRTGEISI 239
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R + L++ AT A + ++ WR+FY ++ PN + ++W+ N
Sbjct: 240 RTIWQSLQETEATEGRA----TFEKELCWRDFYNMIYVSFPNQKNEPIQENYRFIEWENN 295
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
++ +AW GKTG+P +DA MRQL+ GW+H+ R A FLT+ DL + W G+ F++
Sbjct: 296 REFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK-DLLIDWRFGEKYFQQ 354
Query: 232 LLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+L+D D A N G W W +++ +FR+++P +K D
Sbjct: 355 MLIDYDPASNIGGWQWAASTGTDSVPYFRIFNPTTQSQKFD 395
>gi|47096881|ref|ZP_00234460.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 1/2a
F6854]
gi|254911267|ref|ZP_05261279.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J2818]
gi|254935594|ref|ZP_05267291.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes F6900]
gi|386046246|ref|YP_005964578.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J0161]
gi|47014746|gb|EAL05700.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
1/2a str. F6854]
gi|258608175|gb|EEW20783.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes F6900]
gi|293589198|gb|EFF97532.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J2818]
gi|345533237|gb|AEO02678.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J0161]
Length = 467
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 119/235 (50%), Gaps = 11/235 (4%)
Query: 38 EHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPST 97
E+L P +E E + L GE A RL + K V ++K P T
Sbjct: 171 ENLFPKYEEQ-FAEMTCDLPILDSGEKTANTRLANFI--KHDVADYDKARDFPEL--DKT 225
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
+ LS YL+ G +SVR + L++ AT A ++ WR+FY ++ PN
Sbjct: 226 SHLSRYLRTGEISVRTIWQALQENEATEGRA----IFEKELCWRDFYNMIYVSFPNQKNE 281
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ ++W+ N ++ +AW GKTG+P +DA MRQL+ GW+H+ R A FLT+ D
Sbjct: 282 PIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTK-D 340
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L + W G+ F+++L+D D A N G W W +++ +FR+++P +K D
Sbjct: 341 LLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395
>gi|404412670|ref|YP_006698257.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC7179]
gi|404238369|emb|CBY59770.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC7179]
Length = 467
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 119/235 (50%), Gaps = 11/235 (4%)
Query: 38 EHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPST 97
E+L P +E E + L GE A RL + K V ++K P T
Sbjct: 171 ENLFPKYEEQ-FAEMTCDLPILDSGEKTANTRLANFI--KHDVADYDKARDFPEL--DKT 225
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
+ LS YL+ G +SVR + L++ AT A ++ WR+FY ++ PN
Sbjct: 226 SHLSRYLRTGEISVRTIWQALQENEATEGRA----IFEKELCWRDFYNMIYVSFPNQKNE 281
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ ++W+ N ++ +AW GKTG+P +DA MRQL+ GW+H+ R A FLT+ D
Sbjct: 282 PIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTK-D 340
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L + W G+ F+++L+D D A N G W W +++ +FR+++P +K D
Sbjct: 341 LLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395
>gi|257089919|ref|ZP_05584280.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis CH188]
gi|256998731|gb|EEU85251.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis CH188]
Length = 477
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 113/221 (51%), Gaps = 10/221 (4%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
+ IPL + GE A + L + K +R +E P + T+ LS +L+ G LS+
Sbjct: 189 ARIPLKHYSVGEKTARRCLNTFIDQK--LRSYENKRDFP--YQDQTSHLSTFLRTGELSI 244
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R + EL A+ P + + ++ WR+FY ++ S P + + + W +
Sbjct: 245 RTIWQEL----ASMPSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWTND 300
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+ F++
Sbjct: 301 PEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRGGEKYFQK 359
Query: 232 LLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTD 271
+L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 360 MLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 400
>gi|238028072|ref|YP_002912303.1| deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
gi|237877266|gb|ACR29599.1| Deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
Length = 489
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 107/215 (49%), Gaps = 14/215 (6%)
Query: 63 ETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKIL 122
E L RLE L + +R + P+ P+T+ LSPYL+FG LS R +H +
Sbjct: 217 EEGGLARLEAFLDKQ--IRGYGDARDRPD--RPATSRLSPYLRFGQLSARQVWHAAQ--- 269
Query: 123 ATGPHAKPPVS-----LLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEA 177
A G V+ L ++ WREF + P + W ++E A
Sbjct: 270 AAGREGGAAVAADIEKFLSELGWREFNTSLLYHFPELPMRNYRDRFDAMPWRSDEAAFAA 329
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W G+TGYP +DA MR+L GW+H+ R A FL + L + W G+ F + L+DAD
Sbjct: 330 WCRGRTGYPLVDAGMRELWATGWMHNRVRMVTASFLIK-HLLIDWRAGERWFWDTLVDAD 388
Query: 238 WAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
A N+ NW W++ S A +FR+++PV G+K D
Sbjct: 389 IANNSANWQWVAGSGADAAPYFRIFNPVMQGRKFD 423
>gi|144897443|emb|CAM74307.1| Deoxyribodipyrimidine photo-lyase [Magnetospirillum gryphiswaldense
MSR-1]
Length = 457
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 110/211 (52%), Gaps = 10/211 (4%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GE A RL L V +++ P +P T++LSP+L FG +S R +H + +
Sbjct: 192 GEAGAAARLADFLDGP--VETYQRDRDLPA--KPGTSLLSPHLAFGEISPRQIWHAARAL 247
Query: 122 LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
P + L ++ WREF + + P+ + W + + L W G
Sbjct: 248 ----PPGDGIHTFLKELGWREFSRHLLARQPDLATIPLRPEFRAFPWRDDPEALRKWQMG 303
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
+TGYP IDA +RQL GW+H+ R VA FL + DL + W+ G++ F + L+DAD A N
Sbjct: 304 RTGYPIIDAGLRQLWQTGWMHNRVRMIVASFLIK-DLLIPWQAGEAWFWDTLVDADSANN 362
Query: 242 AGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
A +W W++ S A FFR+++PV G+K D
Sbjct: 363 AASWQWVAGSGADAAPFFRIFNPVTQGEKFD 393
>gi|425471493|ref|ZP_18850353.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9701]
gi|389882607|emb|CCI36943.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9701]
Length = 474
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 118/235 (50%), Gaps = 12/235 (5%)
Query: 41 VPTMKEMGLD-ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTV 99
+PT++ +G ++ +PL GE A RLE+ + +++ P T+
Sbjct: 187 LPTLENLGFTWQNPLPLTP---GEKAAHSRLEEFCQGV--INNYQEDRNFPAF--DGTSR 239
Query: 100 LSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFDK 156
LS LKFG + +R + ++L + S++ ++ WREFY P +
Sbjct: 240 LSAALKFGAIGIRTIWTATLELLENCRAEEAKDSIITWQQELAWREFYQHCLYFFPELAE 299
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K W NE++ +AW GKTGYP +DA MRQL GW+H+ R VA FLT+
Sbjct: 300 GAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTK- 358
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DL ++W++G+ F + L D D A N G W W ++S + R+++P + +K D
Sbjct: 359 DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQTQKFD 413
>gi|254828345|ref|ZP_05233032.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
N3-165]
gi|258600738|gb|EEW14063.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
N3-165]
Length = 467
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 119/235 (50%), Gaps = 11/235 (4%)
Query: 38 EHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPST 97
E+L P +E E + L GE A RL + K V ++K P T
Sbjct: 171 ENLFPKYEEQ-FAEMTCDLPILDSGEKTANTRLANFI--KHDVADYDKARDFPEL--DKT 225
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
+ LS YL+ G +SVR + L++ AT A ++ WR+FY ++ PN
Sbjct: 226 SHLSRYLRTGEISVRTIWQALQENEATEGRA----IFEKELCWRDFYNMIYVSFPNQKNE 281
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ ++W+ N ++ +AW GKTG+P +DA MRQL+ GW+H+ R A FLT+ D
Sbjct: 282 PIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTK-D 340
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L + W G+ F+++L+D D A N G W W +++ +FR+++P +K D
Sbjct: 341 LLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTIQSQKFD 395
>gi|152969283|ref|YP_001334392.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|378977711|ref|YP_005225852.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|386033856|ref|YP_005953769.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae KCTC 2242]
gi|419976398|ref|ZP_14491796.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419977906|ref|ZP_14493204.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419984657|ref|ZP_14499802.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419993185|ref|ZP_14508131.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419996783|ref|ZP_14511583.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420002848|ref|ZP_14517497.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420006804|ref|ZP_14521300.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420012641|ref|ZP_14526954.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420020251|ref|ZP_14534440.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420024165|ref|ZP_14538179.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420031154|ref|ZP_14544977.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420036211|ref|ZP_14549872.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420041995|ref|ZP_14555490.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420047089|ref|ZP_14560407.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420054119|ref|ZP_14567294.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420058907|ref|ZP_14571917.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420064257|ref|ZP_14577067.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420069626|ref|ZP_14582281.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420076255|ref|ZP_14588727.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|421918400|ref|ZP_16347929.1| Deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|424829653|ref|ZP_18254381.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|428150049|ref|ZP_18997839.1| Deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428941400|ref|ZP_19014448.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae VA360]
gi|449060880|ref|ZP_21738418.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae hvKP1]
gi|150954132|gb|ABR76162.1| deoxyribodipyrimidine photolyase (photoreactivation) [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|339760984|gb|AEJ97204.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae KCTC 2242]
gi|364517122|gb|AEW60250.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397340703|gb|EJJ33899.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397353446|gb|EJJ46520.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397353634|gb|EJJ46702.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397359157|gb|EJJ51859.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397364191|gb|EJJ56824.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397370498|gb|EJJ63072.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397381517|gb|EJJ73688.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397385651|gb|EJJ77746.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397388249|gb|EJJ80238.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397399548|gb|EJJ91200.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397400894|gb|EJJ92532.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397407030|gb|EJJ98433.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397417554|gb|EJK08719.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397417848|gb|EJK09011.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397423395|gb|EJK14327.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397433866|gb|EJK24509.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397436231|gb|EJK26825.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397442874|gb|EJK33216.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397447360|gb|EJK37554.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|410119262|emb|CCM90554.1| Deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|414707078|emb|CCN28782.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426300560|gb|EKV62839.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae VA360]
gi|427539940|emb|CCM93977.1| Deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|448873509|gb|EMB08596.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae hvKP1]
Length = 480
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 109/240 (45%), Gaps = 19/240 (7%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRL----EKSLANKEWVRKFEKPNTAPNSLEPS 96
P + E+ ++ F E AL RL +++ A+ E R F
Sbjct: 183 APPLPELNYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVE--------G 234
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSP L G LS R H L + L ++ WREFY + P
Sbjct: 235 TSRLSPCLAIGVLSPRQCLHRLLTEHPAALDGGAGATWLNELIWREFYRHLMVYYPKL-- 292
Query: 157 MKGNKICC---QVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
KG +V W E L+AW G+TG+P +DA MRQL GW+H+ R VA FL
Sbjct: 293 CKGRPFTAWTDKVAWRAEEASLQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFL 352
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
T+ DL L W G+ F L+D D A N G W W +++ +FR+++P G+K DK
Sbjct: 353 TK-DLRLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDK 411
>gi|186473227|ref|YP_001860569.1| deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815]
gi|184195559|gb|ACC73523.1| Deoxyribodipyrimidine photo-lyase [Burkholderia phymatum STM815]
Length = 504
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 132/273 (48%), Gaps = 15/273 (5%)
Query: 13 LPKPKPADDAPTSLPRECQGILHPD---EHLVPTMKEMGLDESSIPLCKFPGGETEALKR 69
L + P D P + R Q + P +H PT+ +MG + + G + A R
Sbjct: 178 LKQLTPFDLKPYPVERYSQSLARPPRTLDHAWPTLAKMGFAPGKLAETELQAGMSGAQAR 237
Query: 70 LEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAK 129
LE L + + + P + T+ LS +L+FG +S+R L ++ P +
Sbjct: 238 LEDFLTR---IDSYAERRDLPAAR--GTSHLSVHLRFGTVSIRTLA-RLAHEMSLRPGGQ 291
Query: 130 PPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTN---EKYLEAWSHGKTGY 185
+ L ++ WR+FY+++ + P+ K + + + W+T + AW G+TGY
Sbjct: 292 GAATWLSELIWRDFYFMILAHHPHIAKRESFKREFDALRWETGKDADALFAAWCDGRTGY 351
Query: 186 PFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNW 245
P +DA M QL G++H+ R A FL + DL + W G+ FEE L D D++ N G W
Sbjct: 352 PLVDAAMLQLNRTGFMHNRLRMVTASFLVK-DLGIDWRRGERYFEEKLNDFDFSANNGGW 410
Query: 246 MWLSASAFFHQ-FFRVYSPVAFGKKTDKFELLL 277
W +++ Q +FR+++PV +K D L +
Sbjct: 411 QWAASTGCDAQPWFRIFNPVTQSEKFDSQGLFI 443
>gi|422006662|ref|ZP_16353651.1| deoxyribodipyrimidine photolyase [Providencia rettgeri Dmel1]
gi|414098878|gb|EKT60523.1| deoxyribodipyrimidine photolyase [Providencia rettgeri Dmel1]
Length = 480
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 125/259 (48%), Gaps = 29/259 (11%)
Query: 29 ECQGILHPDEHLVPTMKEMGLDESSIPLC---------KFPGGETEALKRLEKSLANKEW 79
+C+ + P++ P + +D +S PL +FP GE AL RL + + K
Sbjct: 170 DCRSLRAPEKRAAP----INIDRAS-PLFPHQPIEDFQQFPAGEKSALTRLRQFCSQK-- 222
Query: 80 VRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHA-----KPPVSL 134
V ++ P S++ T+ LSPYL G LS R ++ L+ A P +
Sbjct: 223 VGDYQNDRDIP-SID-GTSQLSPYLAVGVLSPRQCFNRLQ---AENPQVLDHPDSGAFTW 277
Query: 135 LGQIYWREFYYVVGSDTPNFDKMKGNKICCQ-VDWDTNEKYLEAWSHGKTGYPFIDAIMR 193
L ++ WREFY + P + + Q + W+ + AW G+TGYP +DA MR
Sbjct: 278 LNELVWREFYSHLLVAFPRLSRHQPFIEWTQHIHWNDSSTDFAAWKTGQTGYPIVDAAMR 337
Query: 194 QLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF 253
QL GW+H+ R VA FL + DL + W +G+ F LLD A N G W W +++
Sbjct: 338 QLNTTGWMHNRLRMIVASFLVK-DLLIDWRKGEKYFMSQLLDGSLAANNGGWQWSASTGV 396
Query: 254 -FHQFFRVYSPVAFGKKTD 271
+FR+++P GKK D
Sbjct: 397 DASPWFRIFNPTTQGKKFD 415
>gi|411010414|ref|ZP_11386743.1| deoxyribodipyrimidine photolyase [Aeromonas aquariorum AAK1]
Length = 473
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 111/222 (50%), Gaps = 17/222 (7%)
Query: 58 KFPGGETEALKRL----EKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRL 113
++P GE EA +RL E+++ + R F P A T+VLSPYL G +S R
Sbjct: 202 RWPVGEAEASRRLNDFLEQAVLDYGETRDF--PAIA------GTSVLSPYLAAGIISPRQ 253
Query: 114 FYHELKKILATGPHAK--PPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKI-CCQVDWDT 170
L++ L P +K P L ++ WREFY + P + K + W
Sbjct: 254 CVAALQQRLGYRPQSKAQPGFVWLNELIWREFYRHLLVLIPTLSMNRPFKPETSALPWSW 313
Query: 171 NEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFE 230
+ AW G+TGYP +DA MR L GW+H+ R VA FLT+ DL++ W G+ F
Sbjct: 314 DPDAFAAWCEGRTGYPIVDAAMRCLNATGWMHNRLRMIVASFLTK-DLHIHWRLGEDYFM 372
Query: 231 ELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
L+D D A N G W W + + A +FRV++P G++ D
Sbjct: 373 SRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFD 414
>gi|423458833|ref|ZP_17435630.1| hypothetical protein IEI_01973 [Bacillus cereus BAG5X2-1]
gi|401145461|gb|EJQ52985.1| hypothetical protein IEI_01973 [Bacillus cereus BAG5X2-1]
Length = 476
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 120/238 (50%), Gaps = 14/238 (5%)
Query: 39 HLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTT 98
HL+PT+ ES + E A K +K ++K + + + PN + + +
Sbjct: 182 HLLPTIPWTSHIESI-----WEPTEEGAYKACKKFFSSK--LASYSEGRDFPN--QNAHS 232
Query: 99 VLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+L+PYL FG +SVR YH L K S + Q WREF Y + P
Sbjct: 233 MLAPYLSFGQISVRWMYHYLINKSTERQCSLFEKQVNSFIRQFIWREFSYYLLYHYPFTV 292
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL +
Sbjct: 293 YKPLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 353 -HLLIPWQEGAKWFLDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|161522875|ref|YP_001585804.1| deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
17616]
gi|189348291|ref|YP_001941487.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
17616]
gi|160346428|gb|ABX19512.1| Deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
17616]
gi|189338429|dbj|BAG47497.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
17616]
Length = 505
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 124/247 (50%), Gaps = 21/247 (8%)
Query: 41 VPTMKEMGL-----DESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP 95
V T++ +GL D +S + GE A +RL+ L + +R + P +
Sbjct: 194 VCTLRALGLQPTAPDWASGLRLTWRCGEEAARQRLDAFLEHS--LRDYADMRDLPAAH-- 249
Query: 96 STTVLSPYLKFGCLSVRLFYH----------ELKKILATGPHAKPPVSLLGQIYWREFYY 145
+T+ LSPYL+FG +SVR ++ +K P + P L +I WREF Y
Sbjct: 250 ATSRLSPYLRFGNISVRQVWYAASSAASAMQRTRKADLGDPQSGPLNKFLSEIGWREFSY 309
Query: 146 VVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLA 205
+ P ++ + + W + L W G TGYP +DA MR+L GW+H+
Sbjct: 310 HLLYHFPPLHQVNFRRQFDSMPWRDDPNALRKWQTGHTGYPLVDAGMRELWHTGWMHNRV 369
Query: 206 RHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPV 264
R VA FL++ L + W EG++ F + L+DAD A N +W W+S S A +FR+++PV
Sbjct: 370 RMVVASFLSK-HLLIDWREGEAWFWDTLVDADEASNPASWQWVSGSGADAAPYFRIFNPV 428
Query: 265 AFGKKTD 271
G+K D
Sbjct: 429 LQGQKFD 435
>gi|428306556|ref|YP_007143381.1| deoxyribodipyrimidine photo-lyase type I [Crinalium epipsammum PCC
9333]
gi|428248091|gb|AFZ13871.1| deoxyribodipyrimidine photo-lyase type I [Crinalium epipsammum PCC
9333]
Length = 474
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 95/177 (53%), Gaps = 3/177 (1%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPH-AKPPVSLLGQ-IYWREFYYVVGSDTPNF 154
T+ LS LKFG + +R + + + P A+ + Q + WREFY + P+
Sbjct: 240 TSQLSAALKFGAIGIRTVWDAIATLYQNSPESAQASIQTWQQELAWREFYQHAIYNFPDL 299
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
K + W+ N ++ +AW GKTGYP +DA MRQ+ GW+H+ R VA FLT
Sbjct: 300 AKGAYREAFKDFPWNDNSEHFQAWCEGKTGYPIVDAAMRQMNTIGWMHNRCRMIVASFLT 359
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+ DL L+W+ G+ F + L+D D + N G W W ++S + R+++P + +K D
Sbjct: 360 K-DLLLNWQLGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKPVRIFNPASQAQKFD 415
>gi|254228731|ref|ZP_04922154.1| deoxyribodipyrimidine photolyase family [Vibrio sp. Ex25]
gi|262396547|ref|YP_003288400.1| deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
gi|151938678|gb|EDN57513.1| deoxyribodipyrimidine photolyase family [Vibrio sp. Ex25]
gi|262340141|gb|ACY53935.1| deoxyribodipyrimidine photolyase [Vibrio sp. Ex25]
Length = 471
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
Query: 97 TTVLSPYLKFGCLS-----VRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDT 151
T+ LSPYL G LS RL+ + L G + L +I WREFY +
Sbjct: 238 TSQLSPYLAIGALSPRQCIARLYAENQQNDLTEGK-----ATWLSEIIWREFYQHLLVFE 292
Query: 152 PNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVA 210
P K KG ++ W +E+ E W G TGYP +DA MRQL GW+H+ R VA
Sbjct: 293 PKLVKGKGFIDWEDKIQWSYDEQAFERWKAGATGYPIVDAAMRQLNQTGWMHNRLRMVVA 352
Query: 211 CFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKK 269
FLT+ DL++ W G++ F L+D D+A N G W W +++ Q +FR+++P++ G+K
Sbjct: 353 SFLTK-DLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEK 411
Query: 270 TD 271
D
Sbjct: 412 FD 413
>gi|451972713|ref|ZP_21925917.1| deoxyribodipyrimidine photolyase family [Vibrio alginolyticus
E0666]
gi|451931406|gb|EMD79096.1| deoxyribodipyrimidine photolyase family [Vibrio alginolyticus
E0666]
Length = 471
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 98/182 (53%), Gaps = 13/182 (7%)
Query: 97 TTVLSPYLKFGCLS-----VRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDT 151
T+ LSPYL G LS RL+ + L G + L +I WREFY +
Sbjct: 238 TSQLSPYLAIGALSPRQCIARLYAENQQNDLTEGK-----ATWLSEIIWREFYQHLLVFE 292
Query: 152 PNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVA 210
P K KG ++ W +E+ E W G TGYP +DA MRQL GW+H+ R VA
Sbjct: 293 PKLVKGKGFIDWEDKIQWSYDEQAFERWKAGATGYPIVDAAMRQLNQTGWMHNRLRMVVA 352
Query: 211 CFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKK 269
FLT+ DL++ W G++ F L+D D+A N G W W +++ Q +FR+++P++ G+K
Sbjct: 353 SFLTK-DLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEK 411
Query: 270 TD 271
D
Sbjct: 412 FD 413
>gi|423575239|ref|ZP_17551358.1| hypothetical protein II9_02460 [Bacillus cereus MSX-D12]
gi|401209847|gb|EJR16604.1| hypothetical protein II9_02460 [Bacillus cereus MSX-D12]
Length = 476
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 121/238 (50%), Gaps = 14/238 (5%)
Query: 39 HLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTT 98
HL+PT+ ES + E A K +K ++K + + + PN + + +
Sbjct: 182 HLLPTIPWTSHMESI-----WEPTEEGAYKTFKKFFSSK--LVSYSEGRDFPN--QNAHS 232
Query: 99 VLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+L+PYL FG +SV++ YH L + S + Q WREF Y + P
Sbjct: 233 MLAPYLSFGQISVKVMYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYPFTV 292
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL +
Sbjct: 293 YKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 353 -HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|419762393|ref|ZP_14288640.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|424934425|ref|ZP_18352797.1| Deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425077629|ref|ZP_18480732.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425080535|ref|ZP_18483632.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|425088262|ref|ZP_18491355.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|425090596|ref|ZP_18493681.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|428937323|ref|ZP_19010624.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae JHCK1]
gi|397744574|gb|EJK91785.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|405590608|gb|EKB64121.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405601354|gb|EKB74507.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405606180|gb|EKB79175.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405614280|gb|EKB87001.1| deoxyribodipyrimidine photo-lyase [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|407808612|gb|EKF79863.1| Deoxyribodipyrimidine photolyase [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|426296515|gb|EKV59137.1| deoxyribodipyrimidine photolyase [Klebsiella pneumoniae JHCK1]
Length = 480
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 109/240 (45%), Gaps = 19/240 (7%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRL----EKSLANKEWVRKFEKPNTAPNSLEPS 96
P + E+ ++ F E AL RL +++ A+ E R F
Sbjct: 183 APPLPELNYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVE--------G 234
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSP L G LS R H L + L ++ WREFY + P
Sbjct: 235 TSRLSPCLAIGVLSPRQCLHRLLTEHPAALDGGAGATWLNELIWREFYRHLMVYYPKL-- 292
Query: 157 MKGNKICC---QVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
KG +V W E L+AW G+TG+P +DA MRQL GW+H+ R VA FL
Sbjct: 293 CKGRPFTAWTDKVAWRAEEAALQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFL 352
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
T+ DL L W G+ F L+D D A N G W W +++ +FR+++P G+K DK
Sbjct: 353 TK-DLRLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDK 411
>gi|229199867|ref|ZP_04326458.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293]
gi|228583609|gb|EEK41836.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293]
Length = 476
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 121/238 (50%), Gaps = 14/238 (5%)
Query: 39 HLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTT 98
HL+PT+ ES + E A K +K ++K + + + PN + + +
Sbjct: 182 HLLPTIPWTSHMESI-----WEPTEEGAYKTFKKFFSSK--LVSYSEGRDFPN--QNAHS 232
Query: 99 VLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+L+PYL FG +SV++ YH L + S + Q WREF Y + P
Sbjct: 233 MLAPYLSFGQISVKVMYHYLINKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYPFTV 292
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL +
Sbjct: 293 YKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 353 -HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|353238551|emb|CCA70494.1| related to deoxyribodipyrimidine photo-lyase PHR [Piriformospora
indica DSM 11827]
Length = 585
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 96/182 (52%), Gaps = 7/182 (3%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG----QIYWREFYYVVGSDT 151
S++ +SPYL G +S R E K + G +I WR+FY V S
Sbjct: 343 SSSRMSPYLSAGVISARELIRETMKFQGVNKINMERDNGGGMWVSEIGWRDFYSHVLSAF 402
Query: 152 PNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVA 210
P+ + + + W+T+E EAW +G TGYP +DA MRQL+ GW+H+ R VA
Sbjct: 403 PHVSMGRPFQEKYADIKWETDESVFEAWKNGMTGYPIVDATMRQLKAHGWVHNRTRMIVA 462
Query: 211 CFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKK 269
FLT+ DL + W G+ F + L+D D A N G W W +++ Q +FR+++P+ +K
Sbjct: 463 MFLTK-DLMMDWRLGEKWFMQQLIDGDLANNNGGWQWSASTGVDPQPYFRIFNPILQSEK 521
Query: 270 TD 271
D
Sbjct: 522 AD 523
>gi|255950764|ref|XP_002566149.1| Pc22g22550 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593166|emb|CAP99543.1| Pc22g22550 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 581
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 117/217 (53%), Gaps = 9/217 (4%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
+P GE EAL+RL+ L K +++E+ + + ST+VLSPY G LS R
Sbjct: 309 YPAGEHEALQRLDNFLEEKG--KEYEETRSMLSG--ESTSVLSPYFACGALSARTAVATA 364
Query: 119 KKILATGPHAKPP--VSLLGQIYWREFYYVVGSDTPNFDKMKGNKI-CCQVDWDTNEKYL 175
K+I P ++ + ++ WR+FY V + P K K ++W+ ++
Sbjct: 365 KRINKGHIDRYNPGYMTWISELAWRDFYKHVLVNWPFICMNKCFKPEHTNIEWEYDKDQF 424
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
+AW GKTG+P +DA MRQLR W+H+ R V+ F T+ DL L W G+ F E L+D
Sbjct: 425 QAWCDGKTGFPIVDAAMRQLRHCAWMHNRTRMVVSSFFTK-DLMLDWRRGERYFMENLID 483
Query: 236 ADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
D+A N G W + S++ Q +FR+++P+ ++ D
Sbjct: 484 GDFASNHGGWGFGSSTGVDPQPYFRIFNPLRQSERFD 520
>gi|440703964|ref|ZP_20884860.1| FAD binding domain of DNA photolyase [Streptomyces turgidiscabies
Car8]
gi|440274432|gb|ELP62999.1| FAD binding domain of DNA photolyase [Streptomyces turgidiscabies
Car8]
Length = 457
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 114/219 (52%), Gaps = 25/219 (11%)
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKK 120
GGETE RL L + V +E + + +T+ LSP+L FG LS H ++
Sbjct: 198 GGETEGRARLAAWL--RAGVASYEDRHD--DLAGDATSRLSPHLHFGTLSAVELVHRARR 253
Query: 121 ILATGPHAKPPVSLLGQIYWREFYYVV-----GSDTPNFDKMKGNKICCQVDWDTNEKY- 174
A GP A + + Q+ WR+F+ V GS T ++ + K ++ W + +
Sbjct: 254 --AGGPGAD---AFVRQLAWRDFHRQVLAARPGSATADY-RTKHDR------WRSERQAR 301
Query: 175 --LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+EAW G+TGYP +DA MRQLR EGW+H+ R A FLT+ LY+ W G F +L
Sbjct: 302 EDVEAWKEGRTGYPIVDAAMRQLRHEGWMHNRGRLLTASFLTK-TLYVDWRVGARHFLDL 360
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
L+D D A N NW W++ + + RV +PV K+ D
Sbjct: 361 LVDGDIANNQLNWQWMAGTGTDSRPNRVLNPVTQSKRYD 399
>gi|403714841|ref|ZP_10940707.1| deoxyribodipyrimidine photo-lyase [Kineosphaera limosa NBRC 100340]
gi|403211169|dbj|GAB95390.1| deoxyribodipyrimidine photo-lyase [Kineosphaera limosa NBRC 100340]
Length = 461
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 114/229 (49%), Gaps = 16/229 (6%)
Query: 46 EMGLDESSIPLCKFPGGETEALKRLEKSLAN--KEWVRKFEKPNTAPNSLEPSTTVLSPY 103
E LD +P P GE AL R LA+ + + E+P+ +T+ LSPY
Sbjct: 182 EAALDAPGVPDLP-PAGEGAALDRWRAFLADGLAGYATRRERPDL------DATSRLSPY 234
Query: 104 LKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKIC 163
LKFG L R +L+ + GP A+ + ++ WREFY V P +
Sbjct: 235 LKFGVLHPRSLLADLEA--SGGPDAE---RFVTELAWREFYADVLHHHPESLEADLRPAL 289
Query: 164 CQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWE 223
+ ++ + +EAW G+TG+P +DA MRQL GW+H+ R A FLT+ DL++ W
Sbjct: 290 AGIRYEDSADLVEAWQQGRTGFPLVDAGMRQLLATGWMHNRVRMVAASFLTK-DLHVWWP 348
Query: 224 EGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
G F + L+D D A N W W++ + +FRV++PV G + D
Sbjct: 349 AGARWFLDHLIDGDLASNTHGWQWIAGTGTDAAPYFRVFNPVLQGLRFD 397
>gi|417957982|ref|ZP_12600899.1| hypothetical protein l13_13110 [Neisseria weaveri ATCC 51223]
gi|343967374|gb|EGV35619.1| hypothetical protein l13_13110 [Neisseria weaveri ATCC 51223]
Length = 468
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 110/232 (47%), Gaps = 15/232 (6%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
VP E+G + PL P GE A K+L+ + + + P + T+ L
Sbjct: 194 VPMPSEIGFQYCNYPL---PAGEAAAQKQLDHFIGQ---ISSYHLTRDFP--AKKGTSQL 245
Query: 101 SPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGN 160
+ YL G LS R H + I G L ++ WREFY + P+
Sbjct: 246 AAYLNQGMLSARSLAHHVASISNEGAE-----KWLEELIWREFYQQILYHNPDVVHQSFR 300
Query: 161 KICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYL 220
+ W+ E + E W +G+TGYP +DA MRQL+ G +H+ R A FL + DL +
Sbjct: 301 PEYHHLHWENREDWFERWKNGETGYPIVDAAMRQLKACGMMHNRLRMITAGFLVK-DLLI 359
Query: 221 SWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
W G++ F E LLD D A N GNW W + + Q +FR+++PV +K D
Sbjct: 360 DWRLGEAWFAEQLLDYDLAANNGNWQWSAGTGCDAQPYFRIFNPVLQSQKFD 411
>gi|365866676|ref|ZP_09406283.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. W007]
gi|364003865|gb|EHM24998.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. W007]
Length = 451
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 96/176 (54%), Gaps = 8/176 (4%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+T+ LSP+L FG +S H ++ +G A + Q+ WR+F++ V +D P D
Sbjct: 226 ATSRLSPHLHFGTVSAAELVHRAREKGGSGGEA-----FVRQLAWRDFHHQVLADRP--D 278
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
+ W ++E ++AW G+TGYP +DA MRQL EGW+H+ R A FLT+
Sbjct: 279 ASWSDYRPRHDRWRSDEDEIDAWRTGRTGYPLVDAAMRQLAHEGWMHNRGRMLAASFLTK 338
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LY+ W G F +LL+D D A N NW W++ + + RV +PV GK+ D
Sbjct: 339 -TLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRPNRVLNPVIQGKRFD 393
>gi|329998823|ref|ZP_08303226.1| deoxyribodipyrimidine photo-lyase, partial [Klebsiella sp. MS 92-3]
gi|328538550|gb|EGF64657.1| deoxyribodipyrimidine photo-lyase [Klebsiella sp. MS 92-3]
Length = 461
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 109/240 (45%), Gaps = 19/240 (7%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRL----EKSLANKEWVRKFEKPNTAPNSLEPS 96
P + E+ ++ F E AL RL +++ A+ E R F
Sbjct: 183 APPLPELNYPQTPFDGLLFAADEKTALARLRAFCQQAAADYEGQRDFPAVE--------G 234
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSP L G LS R H L + L ++ WREFY + P
Sbjct: 235 TSRLSPCLAIGVLSPRQCLHRLLTEHPAALDGGAGATWLNELIWREFYRHLMVYYPKL-- 292
Query: 157 MKGNKICC---QVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
KG +V W E L+AW G+TG+P +DA MRQL GW+H+ R VA FL
Sbjct: 293 CKGRPFTAWTDKVAWRAEEASLQAWQRGETGFPIVDAAMRQLNATGWMHNRLRMIVASFL 352
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
T+ DL L W G+ F L+D D A N G W W +++ +FR+++P G+K DK
Sbjct: 353 TK-DLRLDWRAGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDK 411
>gi|260597109|ref|YP_003209680.1| deoxyribodipyrimidine photolyase [Cronobacter turicensis z3032]
gi|260216286|emb|CBA29241.1| Deoxyribodipyrimidine photo-lyase [Cronobacter turicensis z3032]
Length = 473
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 104/217 (47%), Gaps = 11/217 (5%)
Query: 59 FPGGETEALKRLEKSLANK--EWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
FP GE ALKRL + ++ K + P T++LSPYL G LS R H
Sbjct: 203 FPAGEEAALKRLRDFCRHDAGDYPEKRDFPAIR------GTSLLSPYLAIGVLSPRQCLH 256
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYL 175
L L ++ WREFY + P+ + + +V W N+ +
Sbjct: 257 RLLTEHPRALEGGSGAVWLNELIWREFYRHLIVAWPHLCRHQPFIDWTARVAWQRNDAHF 316
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
+AW G TGYP +DA MRQ+ GW+H+ R A FL + DL + W G+ F L+D
Sbjct: 317 QAWCEGNTGYPIVDAAMRQMNATGWMHNRLRMITASFLVK-DLLVDWRRGERYFMSQLID 375
Query: 236 ADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D+A N G W W +++ +FR+++P G++ D
Sbjct: 376 GDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFD 412
>gi|345874779|ref|ZP_08826579.1| hypothetical protein l11_06600 [Neisseria weaveri LMG 5135]
gi|343970138|gb|EGV38336.1| hypothetical protein l11_06600 [Neisseria weaveri LMG 5135]
Length = 468
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 110/232 (47%), Gaps = 15/232 (6%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
VP E+G + PL P GE A K+L+ + + + P + T+ L
Sbjct: 194 VPMPSEIGFQYCNYPL---PAGEAAAQKQLDHFIGQ---ISSYHLTRDFP--AKKGTSQL 245
Query: 101 SPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGN 160
+ YL G LS R H + I G L ++ WREFY + P+
Sbjct: 246 AAYLNQGMLSARSLAHRVASISNEGAE-----KWLEELIWREFYQQILYHNPDVVHQSFR 300
Query: 161 KICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYL 220
+ W+ E + E W +G+TGYP +DA MRQL+ G +H+ R A FL + DL +
Sbjct: 301 PEYHHLHWENREDWFERWKNGETGYPIVDAAMRQLKACGMMHNRLRMITAGFLVK-DLLI 359
Query: 221 SWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
W G++ F E LLD D A N GNW W + + Q +FR+++PV +K D
Sbjct: 360 DWRLGEAWFAEQLLDYDLAANNGNWQWSAGTGCDAQPYFRIFNPVLQSQKFD 411
>gi|261344548|ref|ZP_05972192.1| deoxyribodipyrimidine photolyase [Providencia rustigianii DSM 4541]
gi|282567462|gb|EFB72997.1| deoxyribodipyrimidine photolyase [Providencia rustigianii DSM 4541]
Length = 478
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 127/275 (46%), Gaps = 31/275 (11%)
Query: 4 QKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGE 63
Q +++ SLP PKP + P + H + P +F GE
Sbjct: 162 QLMMTDYRSLPAPKPRSE-PIIIDNSQPLFPHTPVEIAP---------------QFIAGE 205
Query: 64 TEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILA 123
AL +L L +E V+ +++ P+ T+ LSPYL G LS R + ++LA
Sbjct: 206 QAALAKLR--LFCRERVQDYQRDRDIPSI--DGTSQLSPYLAIGTLSPR---QCVNRLLA 258
Query: 124 TGPHA-----KPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQ-VDWDTNEKYLEA 177
PH S L ++ WREFY + P + + Q + W+ +E A
Sbjct: 259 ENPHIFDSPDSGGFSWLNELVWREFYSHLLVAFPRLCRHQPFIEWTQHIQWNPDEDAFTA 318
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W G+TGYP +DA MRQL GW+H+ R VA FL + DL + W +G+ F L+D
Sbjct: 319 WKTGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVK-DLLIDWRKGEHYFISQLIDGT 377
Query: 238 WAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
A N G W W +++ +FR+++P GKK D
Sbjct: 378 LAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFD 412
>gi|425462955|ref|ZP_18842418.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9808]
gi|389823910|emb|CCI27577.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9808]
Length = 474
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 12/235 (5%)
Query: 41 VPTMKEMGLD-ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTV 99
+PT++ +G ++ +PL GE A RLE+ + +++ P T+
Sbjct: 187 LPTLENLGFTWQNPLPLAP---GEKAARSRLEEFCQGV--INNYQEDRNFPAF--DGTSR 239
Query: 100 LSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFDK 156
LS LKFG + +R + ++L + S++ ++ WREFY P
Sbjct: 240 LSAALKFGAIGIRTIWTATLELLENCRAQEAKDSIITWQQELAWREFYQHCLYFFPELAV 299
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K W NE++ +AW GKTGYP +DA MRQL GW+H+ R VA FLT+
Sbjct: 300 GAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTK- 358
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DL ++W++G+ F + L D D A N G W W ++S + R+++P + +K D
Sbjct: 359 DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQTQKFD 413
>gi|336126045|ref|YP_004578001.1| deoxyribodipyrimidine photolyase [Vibrio anguillarum 775]
gi|335343762|gb|AEH35044.1| Deoxyribodipyrimidine photolyase [Vibrio anguillarum 775]
Length = 470
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 98/183 (53%), Gaps = 13/183 (7%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPH---AKPPVSLLGQIYWREFYYVVGSDTP 152
ST+ LSPYL G LS R + ++ A H ++ + L +I WREFY + P
Sbjct: 235 STSALSPYLAIGALSAR---QCMARLYAESQHIGLSEGAQTWLSEIIWREFYQHLIGFRP 291
Query: 153 NFDKMKGNKIC---CQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAV 209
D KG V W N E W G+TG+P +DA MRQL GW+H+ R V
Sbjct: 292 --DLCKGKDFAPWGKHVSWWENSTAFERWQQGQTGFPIVDAAMRQLNKTGWMHNRLRMVV 349
Query: 210 ACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGK 268
A FLT+ DL++ W G+ F + L+D D+A N G W W +++ Q +FR+++P + G+
Sbjct: 350 ASFLTK-DLHIDWRLGEQYFMQTLVDGDYASNNGGWQWCASTGCDGQPYFRIFNPTSQGE 408
Query: 269 KTD 271
+ D
Sbjct: 409 RFD 411
>gi|183596981|ref|ZP_02958474.1| hypothetical protein PROSTU_00210 [Providencia stuartii ATCC 25827]
gi|188023634|gb|EDU61674.1| FAD binding domain of DNA photolyase [Providencia stuartii ATCC
25827]
Length = 483
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 136/275 (49%), Gaps = 30/275 (10%)
Query: 4 QKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGE 63
Q + + SLP P+P +A L D+ +P +D +P FP GE
Sbjct: 166 QLVTTDFRSLPAPQPRGEA-----------LAIDDLSLPLFAHHAVD--IVP--HFPAGE 210
Query: 64 TEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILA 123
+ A ++L + K V+ +++ P S+E T++LSPYL G LS R L ++LA
Sbjct: 211 SAARQQLRQFCRLK--VQHYQQHRDIP-SIE-GTSLLSPYLAIGVLSPR---QCLNRLLA 263
Query: 124 TGPHA-----KPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYLEA 177
P + L ++ WREFY+ + P + + + + W++++ +A
Sbjct: 264 EYPPLFDSPDSGAFTWLNELIWREFYHHLLVAFPRLCRHQPFIEWTNHIQWNSSDADFKA 323
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W G+TGYP +DA MRQL GW+H+ R A FL + DL + W G+ F + L+D
Sbjct: 324 WQLGQTGYPIVDAAMRQLNTTGWMHNRLRMITASFLVK-DLLIDWRLGEQYFMQQLIDGT 382
Query: 238 WAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
A N G W W +++ Q +FR+++P GKK D
Sbjct: 383 LAANNGGWQWSASTGTDAQPWFRIFNPTTQGKKFD 417
>gi|386743236|ref|YP_006216415.1| deoxyribodipyrimidine photolyase [Providencia stuartii MRSN 2154]
gi|384479929|gb|AFH93724.1| deoxyribodipyrimidine photolyase [Providencia stuartii MRSN 2154]
Length = 483
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 135/275 (49%), Gaps = 30/275 (10%)
Query: 4 QKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGE 63
Q + + SLP P+P +A L D+ +P +D + FP GE
Sbjct: 166 QLVTTDFRSLPAPQPRGEA-----------LAIDDLSLPLFAHHAVDIAP----HFPAGE 210
Query: 64 TEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILA 123
+ A ++L + K V+ +++ P S+E T++LSPYL G LS R L ++LA
Sbjct: 211 SAARQQLRQFCRLK--VQHYQQHRDIP-SIE-GTSLLSPYLAIGVLSPR---QCLNRLLA 263
Query: 124 TGPHA-----KPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYLEA 177
P + L ++ WREFY+ + P + + + + W++++ +A
Sbjct: 264 EYPPLFDSPDSGAFTWLNELIWREFYHHLLVAFPRLCRHQPFIEWTNHIQWNSSDADFKA 323
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W G+TGYP +DA MRQL GW+H+ R A FL + DL + W G+ F + L+D
Sbjct: 324 WQLGQTGYPIVDAAMRQLNTTGWMHNRLRMITASFLVK-DLLIDWRLGEQYFMQQLIDGT 382
Query: 238 WAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
A N G W W +++ Q +FR+++P GKK D
Sbjct: 383 LAANNGGWQWSASTGTDAQPWFRIFNPTTQGKKFD 417
>gi|168067358|ref|XP_001785586.1| photolyase-like protein [Physcomitrella patens subsp. patens]
gi|162662787|gb|EDQ49598.1| photolyase-like protein [Physcomitrella patens subsp. patens]
Length = 557
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 119/252 (47%), Gaps = 8/252 (3%)
Query: 2 TYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHL--VPTMKEMGL---DESSIPL 56
Y + +E K +PA PT + + + L +PTM E+GL ++S + +
Sbjct: 221 VYTQFRKGVEYNCKVRPALKMPTQMGPLPESLSEKIGELGDIPTMAELGLKYREQSPLGV 280
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
F GGET AL RL+ NK+ ++ +++ ST SP+L GCLS R +
Sbjct: 281 MHFEGGETAALARLQDYFWNKDQLKIYKETRNGMLGANYSTK-FSPWLAHGCLSPRTIHD 339
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPN-FDKMKGNKICCQVDWDTNEKYL 175
E+K+ +L ++ WR+++ V N + G + W N +
Sbjct: 340 EVKRYETERVANDSTYWVLFELIWRDYFRFVSIKYGNAIFHLGGPRKVVGKRWSQNRELF 399
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
EAW G+TGYP IDA M++L G++ + R V FL R DL L W G FE LLD
Sbjct: 400 EAWREGRTGYPLIDANMKELAATGFMSNRGRQIVCSFLVR-DLGLDWRMGGEWFETCLLD 458
Query: 236 ADWAMNAGNWMW 247
D N GNW +
Sbjct: 459 YDPCSNYGNWTY 470
>gi|395763919|ref|ZP_10444588.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium lividum PAMC
25724]
Length = 487
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 114/235 (48%), Gaps = 10/235 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+P++ E+G + S++ P G + A + E LA V +++ P PS L
Sbjct: 191 LPSLGELGFEASNLAELAIPTGMSGASELFEDFLAR---VARYDVARDFPALKGPS--YL 245
Query: 101 SPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGN 160
S +L+FG +S+R + ++ G L ++ WR+FY ++ P+
Sbjct: 246 SMHLRFGTVSLRYLVRSVVDLMDRGSGGDGAPVWLAELIWRDFYAMILYQNPHVAGAAFK 305
Query: 161 KICCQVDWDTN---EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ W+T + AW G+TGYP +DA M QL G++H+ R ACFL + D
Sbjct: 306 PAYDAIAWETGLEADAAFAAWCEGRTGYPLVDAAMAQLNQTGYMHNRLRMVTACFLIK-D 364
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L + W G++ F L D D A N G W W S+S Q +FR+++PV +K D
Sbjct: 365 LGIDWRRGEAYFALHLNDFDLASNNGGWQWASSSGCDSQPYFRIFNPVTQSEKFD 419
>gi|425439515|ref|ZP_18819837.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9717]
gi|389720241|emb|CCH96030.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9717]
Length = 474
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 12/235 (5%)
Query: 41 VPTMKEMGLD-ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTV 99
+PT++ +G ++ +PL GE A RLE+ + +++ P T+
Sbjct: 187 LPTLENLGFTWQNPLPLAP---GEKAARSRLEEFCQGV--INNYQEDRNFPAF--DGTSR 239
Query: 100 LSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFDK 156
LS LKFG + +R + ++L + S++ ++ WREFY P
Sbjct: 240 LSAALKFGAIGIRTIWTATLELLENCRAEEAKDSIITWQQELAWREFYQHCLYFFPELAV 299
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K W NE++ +AW GKTGYP +DA MRQL GW+H+ R VA FLT+
Sbjct: 300 GAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTK- 358
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DL ++W++G+ F + L D D A N G W W ++S + R+++P + +K D
Sbjct: 359 DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQTQKFD 413
>gi|50084372|ref|YP_045882.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Acinetobacter sp. ADP1]
gi|49530348|emb|CAG68060.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Acinetobacter sp. ADP1]
Length = 477
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 130/263 (49%), Gaps = 20/263 (7%)
Query: 21 DAPTSLPRECQGILHPD----EHLVPTMKEMGLDESSIPL-CKFPGGETEALKRLEKSLA 75
D P P + P+ E +P++K++G + + ++P GET AL LE
Sbjct: 164 DIPKCFPYPHKQKQQPEIAKKEAAIPSLKQLGYSQIDQHIQNEWPIGETFALNLLEDFTQ 223
Query: 76 NKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVR-----LFYHELKKILATGPHAKP 130
+K + ++ + P + T+ +S YL G LS+R +F + + K
Sbjct: 224 DK--INRYHESRDYP--AQDGTSHISAYLTIGILSIRQCIQAIFQKQHGQFFLNN---KG 276
Query: 131 PVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFID 189
L ++ WREFY + D P + + + W+ N+++ EAW GKTG P +D
Sbjct: 277 QEIWLNELLWREFYQQLLFDFPKLSRHQPFQDHTKNIPWNENDEHFEAWIQGKTGIPIVD 336
Query: 190 AIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLS 249
A MRQL+ GW+H+ R A FL++ +L + W +G+ F + L+D D A N G W W +
Sbjct: 337 AGMRQLKATGWMHNRVRMICAMFLSK-NLLIDWRKGEKWFMQHLIDGDLAANDGGWQWSA 395
Query: 250 ASAF-FHQFFRVYSPVAFGKKTD 271
++ +FR+++PV +K D
Sbjct: 396 STGTDASPYFRIFNPVTQSQKFD 418
>gi|425456019|ref|ZP_18835730.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9807]
gi|389802953|emb|CCI18036.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9807]
Length = 474
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 12/235 (5%)
Query: 41 VPTMKEMGLD-ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTV 99
+PT++ +G ++ +PL GE A RLE+ + +++ P T+
Sbjct: 187 LPTLENLGFTWQNPLPLTP---GEKAANSRLEEFCQGV--INNYQEDRNFPAV--DGTSR 239
Query: 100 LSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFDK 156
LS LKFG + +R + ++L + S++ ++ WREFY P
Sbjct: 240 LSAALKFGAIGIRTIWTATLELLENCRAQEAKDSIITWQQELAWREFYQHCLYFFPELAV 299
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K W NE++ +AW GKTGYP +DA MRQL GW+H+ R VA FLT+
Sbjct: 300 GAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTK- 358
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DL ++W++G+ F + L D D A N G W W ++S + R+++P + +K D
Sbjct: 359 DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQTQKFD 413
>gi|284046106|ref|YP_003396446.1| deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
gi|283950327|gb|ADB53071.1| Deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
Length = 476
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 97/183 (53%), Gaps = 8/183 (4%)
Query: 91 NSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSD 150
+ L T+ LSPYL GCLS R E + + G A+ + + Q+ WR+FY V
Sbjct: 232 DRLAGGTSALSPYLHHGCLSAREC--EQRAVRRGGEGAE---AFVRQLAWRDFYAHVLLH 286
Query: 151 TPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVA 210
P + + + + W+ +++ L AW G+TG+P +DA MRQLR GW+H+ AR
Sbjct: 287 HPEDVRREHQERMRALRWERDDELLAAWQDGRTGFPLVDAGMRQLRASGWMHNRARLVTG 346
Query: 211 CFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF--FHQFFRVYSPVAFGK 268
FLT+ DL L W G++ F LLD D A N GNW W+++ F R+ +P +
Sbjct: 347 SFLTK-DLQLDWRAGEAWFMRWLLDGDVASNNGNWQWIASVGVDPAPAFRRILNPALQQR 405
Query: 269 KTD 271
+ D
Sbjct: 406 RHD 408
>gi|448546468|ref|ZP_21626632.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|448548505|ref|ZP_21627724.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
gi|448557855|ref|ZP_21632841.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445702921|gb|ELZ54861.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-646]
gi|445713992|gb|ELZ65763.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-644]
gi|445714263|gb|ELZ66028.1| deoxyribodipyrimidine photolyase [Haloferax sp. ATCC BAA-645]
Length = 484
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 114/234 (48%), Gaps = 10/234 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+PT+ ++G +E S + G A +RL A+ + ++ P +T+ L
Sbjct: 194 LPTISDLGFEEPSASVRS--AGTEAARERLSAFCADA--IYRYADDRDYPT--RDATSRL 247
Query: 101 SPYLKFGCLSVRLFYHELKKIL--ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMK 158
S LKFG + +R Y G + Q+ WREFY V + PN
Sbjct: 248 STDLKFGTIGIREVYAATAAAREGVGGERDESVEEFQSQLAWREFYAHVLREHPNVVTEN 307
Query: 159 GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
+ + W +++ L AW G+TGYP +DA MRQLR E ++H+ R VA FLT+ DL
Sbjct: 308 YKEYENDIAWRDDDEELAAWKAGETGYPIVDAGMRQLREEAYMHNRVRMIVASFLTK-DL 366
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
W G + F E L D D A + G W W +++ Q +FR+++P+ G++ D
Sbjct: 367 LCDWRHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYD 420
>gi|407940619|ref|YP_006856260.1| deoxyribodipyrimidine photo-lyase [Acidovorax sp. KKS102]
gi|407898413|gb|AFU47622.1| deoxyribodipyrimidine photo-lyase [Acidovorax sp. KKS102]
Length = 496
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 16/243 (6%)
Query: 36 PDEHL--VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSL 93
P+ H VPT++++G + + + + P G A + + L E ++E P
Sbjct: 194 PEAHCQPVPTLQDLGFEPTDLSQLRLPTGARGAQQLFDDFLGRIE---RYEDTRNFPAVK 250
Query: 94 EPSTTVLSPYLKFGCLSVRLFYHELKKILATG-PHAKPPVSLLGQIYWREFYYVVGSDTP 152
PS LS +L+FG +S RL +++ G P A + L ++ WR+FY+ + P
Sbjct: 251 GPS--YLSVHLRFGTISPRLLARTAHRLMLEGNPGA---TTWLSELIWRDFYFQILHHHP 305
Query: 153 NFDKMKGNKICCQVDWDTN---EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAV 209
+ + W+T + AW G+TGYP +DA M Q+ G++H+ R V
Sbjct: 306 HVVGQSFKPAYDAIAWETGPEADALFAAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVV 365
Query: 210 ACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGK 268
A FL + DL + W G++ F L D D A N G W W S+S Q +FR+++PV+ +
Sbjct: 366 ASFLVK-DLGIDWRRGEAYFATHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVSQSE 424
Query: 269 KTD 271
K D
Sbjct: 425 KFD 427
>gi|399576486|ref|ZP_10770241.1| deoxyribodipyrimidine photo-lyase type i [Halogranum salarium B-1]
gi|399237930|gb|EJN58859.1| deoxyribodipyrimidine photo-lyase type i [Halogranum salarium B-1]
Length = 489
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 119/255 (46%), Gaps = 31/255 (12%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+P++ E+G DE + G A KRL+ + + ++++ P +T+ L
Sbjct: 175 LPSIDELGFDEPDADVQS--AGTAAARKRLDAFCDDA--IYRYDEDRDYPTR--DATSRL 228
Query: 101 SPYLKFGCLSVRLFYH---ELKKILATGPHAKPPV--------------------SLLGQ 137
S LKFG + +R Y E K +A +P Q
Sbjct: 229 STDLKFGTIGIREVYRATEEAKAAVADESDGEPDGDEEDAESDDETTNDDVESVEEFQSQ 288
Query: 138 IYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRL 197
+ WREFY V P + ++W + L+AW GKTGYP +DA MRQLR
Sbjct: 289 LAWREFYTHVLFFNPEVVSQNYKEYDHDIEWRNDADELQAWKEGKTGYPIVDAGMRQLRE 348
Query: 198 EGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ- 256
E ++H+ R VA FLT+ DL + W EG + F E L D D A + G W W +++ Q
Sbjct: 349 EAYMHNRMRMVVASFLTK-DLLVDWREGYAHFCEHLADHDTANDNGGWQWAASTGTDAQP 407
Query: 257 FFRVYSPVAFGKKTD 271
+FR+++P+ G++ D
Sbjct: 408 YFRIFNPMTQGERYD 422
>gi|375133173|ref|YP_005049581.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio furnissii NCTC 11218]
gi|315182348|gb|ADT89261.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio furnissii NCTC 11218]
Length = 475
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 95/180 (52%), Gaps = 3/180 (1%)
Query: 94 EPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPN 153
+ T+ LSPYL G LS R + A G + + L ++ WREFY + + P
Sbjct: 233 QDGTSSLSPYLAIGALSPRQCIARVYAESAMGALSDGAQTWLSELIWREFYQHLLTFEPK 292
Query: 154 FDKMKGNKI-CCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
K K ++ W T+E W G TGYP +DA MRQL GW+H+ R VA F
Sbjct: 293 LSKSKDFLAWGARLTWWTDEAKFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASF 352
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
LT+ DL++ W G+ F + L+D D+A N G W W +++ Q +FR+++P G+K D
Sbjct: 353 LTK-DLHIDWRWGERYFMQHLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPTTQGEKFD 411
>gi|260769655|ref|ZP_05878588.1| deoxyribodipyrimidine photolyase [Vibrio furnissii CIP 102972]
gi|260614993|gb|EEX40179.1| deoxyribodipyrimidine photolyase [Vibrio furnissii CIP 102972]
Length = 475
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 95/180 (52%), Gaps = 3/180 (1%)
Query: 94 EPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPN 153
+ T+ LSPYL G LS R + A G + + L ++ WREFY + + P
Sbjct: 233 QDGTSSLSPYLAIGALSPRQCIARVYAESAMGALSDGAQTWLSELIWREFYQHLLTFEPK 292
Query: 154 FDKMKGNKI-CCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
K K ++ W T+E W G TGYP +DA MRQL GW+H+ R VA F
Sbjct: 293 LSKSKDFLAWGARLTWWTDEAKFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASF 352
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
LT+ DL++ W G+ F + L+D D+A N G W W +++ Q +FR+++P G+K D
Sbjct: 353 LTK-DLHIDWRWGERYFMQHLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPTTQGEKFD 411
>gi|282899861|ref|ZP_06307822.1| DNA photolyase, FAD-binding [Cylindrospermopsis raciborskii CS-505]
gi|281195131|gb|EFA70067.1| DNA photolyase, FAD-binding [Cylindrospermopsis raciborskii CS-505]
Length = 484
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 129/260 (49%), Gaps = 18/260 (6%)
Query: 23 PTSLPRECQGILHPDEHL--------VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSL 74
P + C+ + +E + +PT +++G S L PG E A +RL L
Sbjct: 170 PIEILANCENLTAREEEIAEKSGVIKLPTARDLGFIWSG-ELILEPG-EVAAWERLTDFL 227
Query: 75 ANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILA---TGPHAKPP 131
+ ++E+ P T++LSP LKFG + +R + + +++LA + +
Sbjct: 228 DCA--IDEYEEKRNYPAI--DGTSLLSPALKFGVIGIRTIWQKTQELLAISNSQEFSNGI 283
Query: 132 VSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAI 191
++ ++ WREFY P + + W N+++ +AW GKTGYP +DA
Sbjct: 284 ITWQKELAWREFYQHAMYHFPELAEGAYRDVFKNFPWSDNQEHFQAWCEGKTGYPIVDAA 343
Query: 192 MRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS 251
MRQL GW+H+ R VA FLT+ DL ++ + G+ F + L+D D + N G W W ++S
Sbjct: 344 MRQLNETGWMHNRCRMIVASFLTK-DLIINPQWGEKYFMQKLIDGDLSANNGGWQWSASS 402
Query: 252 AFFHQFFRVYSPVAFGKKTD 271
+ R+++P + +K D
Sbjct: 403 GMDPKPLRIFNPSSQAQKFD 422
>gi|383827438|ref|ZP_09982538.1| deoxyribodipyrimidine photo-lyase [Mycobacterium xenopi RIVM700367]
gi|383330482|gb|EID09004.1| deoxyribodipyrimidine photo-lyase [Mycobacterium xenopi RIVM700367]
Length = 456
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 96/176 (54%), Gaps = 9/176 (5%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+T+ LSPYL FGCLS H T ++ S + Q+ WR+F++ V + P +
Sbjct: 230 ATSRLSPYLHFGCLSPTEIAHR------TTQSSEGRKSFVRQLAWRDFHHQVLAARP--E 281
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
+ + W N ++L+AW G+TGYP +DA MRQL EGW+H+ AR A FL +
Sbjct: 282 AARSDYRTHHDRWHHNARWLDAWRDGRTGYPIVDAGMRQLAAEGWMHNRARLITASFLAK 341
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LYL W G + F LL+DAD A N NW W++ + + RV +P+ ++ D
Sbjct: 342 -TLYLDWRLGAAHFMSLLVDADVANNQLNWQWVAGTGTDTRPNRVLNPIRQAQRYD 396
>gi|428769113|ref|YP_007160903.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium aponinum PCC 10605]
gi|428683392|gb|AFZ52859.1| deoxyribodipyrimidine photo-lyase (single-stranded DNA-specific)
[Cyanobacterium aponinum PCC 10605]
Length = 491
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 114/229 (49%), Gaps = 5/229 (2%)
Query: 37 DEHLVPTMKEMGLDE---SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSL 93
D +P + ++GL+ S + + F GGETEA+KRL+ K+ ++ +++
Sbjct: 190 DTGNIPILSDLGLENFEVSQLAVLPFKGGETEAIKRLKSYFWEKDCLKVYKETRNGMLGG 249
Query: 94 EPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPN 153
+ S+ SP+L GCLS R Y E++K L+ ++ WR+F+ N
Sbjct: 250 DYSSK-FSPWLALGCLSPRYIYEEVEKYEQERVKNDSTYWLIFELLWRDFFRFTAVKYGN 308
Query: 154 FDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
+ W N EAW G+TGYP IDA MR+L+ G++ + R VA FL
Sbjct: 309 RLFYPSGIQNISIPWQENWLIFEAWCEGQTGYPLIDANMRELKTTGFMSNRGRQNVASFL 368
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYS 262
T+ +L ++W+ G FE LL+D D N GNW + + + FR ++
Sbjct: 369 TK-NLGINWQMGAEWFESLLIDYDVCSNWGNWNYTAGIGNDARGFRYFN 416
>gi|404399161|ref|ZP_10990745.1| deoxyribodipyrimidine photolyase [Pseudomonas fuscovaginae UPB0736]
Length = 481
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 13/224 (5%)
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL- 118
P GE EA +RLE S A+++ + ++ P +P T+ LS YL G +S R H
Sbjct: 203 PAGEKEARRRLE-SFADQQ-IDYYQSERDFPA--KPGTSQLSTYLAAGVVSPRQCLHAAL 258
Query: 119 ---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQ-VDWDTNEKY 174
+ +G V+ + ++ WREFY + P + + + + V W +
Sbjct: 259 QSNQGEFDSGNVGA--VTWINELLWREFYKHILVGYPRVSRHRAFRPETEAVAWRNAPRD 316
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
LEAW G+TG P IDA MRQL GW+H+ R VA FLT+ +L + W EG+ F L+
Sbjct: 317 LEAWQQGRTGLPIIDAAMRQLLATGWMHNRLRMVVAMFLTK-NLLIDWREGERFFMRHLI 375
Query: 235 DADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDKFELLL 277
D D A N G W W S++ +FR+++P++ +K D L +
Sbjct: 376 DGDLAANNGGWQWSSSTGTDSAPYFRIFNPISQSEKFDSEGLFI 419
>gi|403057695|ref|YP_006645912.1| deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
subsp. carotovorum PCC21]
gi|402805021|gb|AFR02659.1| Deoxyribodipyrimidine photo-lyase [Pectobacterium carotovorum
subsp. carotovorum PCC21]
Length = 488
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 109/217 (50%), Gaps = 9/217 (4%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FP GE AL++L + +E V+ +++ P P T+ LSP+L G +S R ++ L
Sbjct: 202 FPSGERAALQQLRRFC--REQVQDYDQQRDFPAL--PGTSKLSPHLALGIVSPRQCFNRL 257
Query: 119 KKILATGPHAKP--PVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQ-VDWDTNEKYL 175
+ + + ++ WREFY + P K + Q V W + + L
Sbjct: 258 RAECPEMLERREGGAFTWFNELVWREFYRHLIVSWPQLCKHRPFTAWTQWVKWRESPEDL 317
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
AW GKTGYP +DA MRQL GW+H+ R A FL + DL + W EG+ F LLD
Sbjct: 318 AAWQQGKTGYPIVDAAMRQLNETGWMHNRLRMICASFLVK-DLLIDWREGERYFMSQLLD 376
Query: 236 ADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D A N G W W +++ +FR+++P G++ D
Sbjct: 377 GDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFD 413
>gi|440226410|ref|YP_007333501.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
gi|440037921|gb|AGB70955.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
Length = 485
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 95/179 (53%), Gaps = 3/179 (1%)
Query: 94 EPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPN 153
+P+T++LSP+L G +S +H + L V +I WREF Y P
Sbjct: 241 KPATSLLSPHLALGEISPARMWHATRG-LPDKVGTDNVVRFRKEIIWREFCYHQLFHFPK 299
Query: 154 FDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
N W ++ K L++W G+TGYP +DA MRQL GW+H+ R A FL
Sbjct: 300 LRTANWNDRYDDFPWLSDAKRLKSWQRGQTGYPIVDAGMRQLWRHGWMHNRVRMIAASFL 359
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
+ DL + W EG++ F + L+DAD A N NW W++ S A FFR+++PV G+K D
Sbjct: 360 IK-DLLIDWREGEAWFRDTLVDADPAANTANWQWVAGSGADASPFFRIFNPVLQGEKFD 417
>gi|390601020|gb|EIN10414.1| hypothetical protein PUNSTDRAFT_119399 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 528
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 96/182 (52%), Gaps = 7/182 (3%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG----QIYWREFYYVVGSDT 151
ST+ LSPYL G +S R E K+L +G +I WR+FY V +
Sbjct: 290 STSRLSPYLATGVISARECIRETMKLLGIKKVEASRDKSIGVWVQEIAWRDFYTHVLAAF 349
Query: 152 PNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVA 210
P + N+ V W+TNE++L+AW G+TG P +DA MRQ R GW+H+ R A
Sbjct: 350 PRVSMGRPFNEKYADVRWETNEEHLQAWKEGRTGVPIVDAAMRQCRTMGWMHNRMRMIAA 409
Query: 211 CFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKK 269
+LT+ DL + W G+ F E +D D A N G W W +++ +FR+++P + +K
Sbjct: 410 MYLTK-DLMIDWRLGEKYFMENFIDGDLASNNGGWQWSASTGTDAVPYFRIFNPYSQSEK 468
Query: 270 TD 271
D
Sbjct: 469 AD 470
>gi|406658770|ref|ZP_11066910.1| deoxyribodipyrimidine photolyase [Streptococcus iniae 9117]
gi|405578985|gb|EKB53099.1| deoxyribodipyrimidine photolyase [Streptococcus iniae 9117]
Length = 470
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 125/253 (49%), Gaps = 15/253 (5%)
Query: 25 SLPRECQGIL---HPDEHLVPTMKEMGLDESSI--PLCKFPGGETEALKRLEKSLANKEW 79
LP+E ++ D VP K + +++ PL GE AL++L L +E
Sbjct: 155 QLPKETPIVIDYSQVDWLFVPNAKTVDSKLNTLFRPLPYHKPGEEAALEQLH--LFIEEG 212
Query: 80 VRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIY 139
+ ++ P T+ LS YL+ G +++R Y + K A+ K + ++
Sbjct: 213 LEAYDVSRDYPEY--DGTSRLSVYLRTGEINIRTVYAAISKAKAS----KGKAVFIKELV 266
Query: 140 WREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEG 199
WREFY+++ + P+ + ++W+ ++ E W G TGYP +DA MRQL G
Sbjct: 267 WREFYHMIYVNHPHQKQEPLQAQFAAIEWENDQALFEQWKAGTTGYPMVDAAMRQLSQTG 326
Query: 200 WIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH-QFF 258
W+H+ R VA FL + DL + W G+ F+E L+D D A N G W W +++ +F
Sbjct: 327 WMHNRLRMIVASFLVK-DLLIDWRWGEEYFQEALMDYDSASNIGGWQWAASTGTDAVPYF 385
Query: 259 RVYSPVAFGKKTD 271
R+++P K+ D
Sbjct: 386 RIFNPTTQAKRFD 398
>gi|423197809|ref|ZP_17184392.1| hypothetical protein HMPREF1171_02424 [Aeromonas hydrophila SSU]
gi|404630927|gb|EKB27571.1| hypothetical protein HMPREF1171_02424 [Aeromonas hydrophila SSU]
Length = 473
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 111/222 (50%), Gaps = 17/222 (7%)
Query: 58 KFPGGETEALKRL----EKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRL 113
++P GE EA +RL E+++ + R F P A T+VLSPYL G +S R
Sbjct: 202 RWPVGEAEASRRLNDFLEQAVLDYGETRDF--PAIA------GTSVLSPYLAAGIISPRQ 253
Query: 114 FYHELKKILATGPHAK--PPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKI-CCQVDWDT 170
L++ L P +K P L ++ WREFY + P + K + W
Sbjct: 254 CVAALQQRLGYRPQSKAQPGFVWLNELIWREFYRHLLVLIPTLSMNRPFKPETSALPWSW 313
Query: 171 NEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFE 230
+ AW G+TGYP +DA MR L GW+H+ R VA FLT+ DL++ W G+ F
Sbjct: 314 DPDAFAAWCEGRTGYPIVDAAMRCLNATGWMHNRLRMIVASFLTK-DLHIHWRLGEDYFM 372
Query: 231 ELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
L+D D A N G W W + + A +FRV++P G++ D
Sbjct: 373 SRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFD 414
>gi|422695016|ref|ZP_16753004.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4244]
gi|315147299|gb|EFT91315.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4244]
Length = 477
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 10/225 (4%)
Query: 48 GLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFG 107
G + IPL + GE A + L + K ++ +E P + T+ LS +L+ G
Sbjct: 185 GEQIARIPLTHYSVGEKTARRCLNTFIDQK--LQSYENKRDFP--YQDQTSHLSTFLRTG 240
Query: 108 CLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVD 167
LS+R + EL A+ P + + ++ WR+FY ++ S P + + +
Sbjct: 241 ELSIRTIWQEL----ASAPSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQ 296
Query: 168 WDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQS 227
W + + W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+
Sbjct: 297 WTNDPEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEK 355
Query: 228 VFEELLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTD 271
F+++L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 356 YFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 400
>gi|121703429|ref|XP_001269979.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
clavatus NRRL 1]
gi|119398122|gb|EAW08553.1| deoxyribodipyrimidine photo-lyase Phr1, putative [Aspergillus
clavatus NRRL 1]
Length = 586
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 119/220 (54%), Gaps = 12/220 (5%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRL-FYHE 117
+P GE EAL RLEK + +E V+ + +T++LSPY G LS R H
Sbjct: 311 YPAGEHEALDRLEKFV--EERVKDYADARNM--MFGQTTSILSPYFASGSLSARTAVVHA 366
Query: 118 LKKILATGPHAKPPV-SLLGQIYWREFYYVVGSDTPNFDKMKGNK-ICCQVDWDTNEKYL 175
K + P + S + ++ WR+FY V P K K ++W+ +E
Sbjct: 367 RKANKGSLDRGDPGLASWISEVAWRDFYKHVLVHWPFICMNKCFKPEFTNLEWEYDENKF 426
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
AW GKTG+P +DA MRQ++ + W+H+ AR VA FL++ DL + W G+ F E L+D
Sbjct: 427 AAWCEGKTGFPIVDAAMRQMKHDAWMHNRARMIVASFLSK-DLLIDWRRGERYFMEHLID 485
Query: 236 ADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDKFE 274
D+A N G W + S++ Q +FR+++P+ +++++F+
Sbjct: 486 GDFASNHGGWGFGSSTGVDPQPYFRIFNPL---RQSERFD 522
>gi|334703517|ref|ZP_08519383.1| deoxyribodipyrimidine photolyase [Aeromonas caviae Ae398]
Length = 474
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 110/220 (50%), Gaps = 13/220 (5%)
Query: 58 KFPGGETEALKRLEKSL--ANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY 115
++P GE EA +RL L A ++ + P A T+VLSPYL G +S R
Sbjct: 202 RWPVGEAEASRRLHAFLDQAVLDYGETRDFPALA------GTSVLSPYLAAGIISARQCV 255
Query: 116 HELKKILATGPHAK--PPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKI-CCQVDWDTNE 172
L++ L P +K P L ++ WREFY + P+ + K + W +
Sbjct: 256 GALQQRLGYRPQSKAQPGFVWLNELIWREFYRHLLVLIPSLSMNRPFKPETAALPWSWDP 315
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
AW G+TGYP +DA MR L GW+H+ R VA FLT+ DL++ W G+ F
Sbjct: 316 DAFAAWCEGRTGYPVVDAAMRCLNATGWMHNRLRMIVASFLTK-DLHIHWRLGEDYFMSR 374
Query: 233 LLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
L+D D A N G W W + + A +FRV++P G++ D
Sbjct: 375 LIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQRFD 414
>gi|453074873|ref|ZP_21977663.1| deoxyribodipyrimidine photo-lyase [Rhodococcus triatomae BKS 15-14]
gi|452763822|gb|EME22097.1| deoxyribodipyrimidine photo-lyase [Rhodococcus triatomae BKS 15-14]
Length = 446
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 111/230 (48%), Gaps = 15/230 (6%)
Query: 51 ESSIPLCKFPGGETEALKRLEKSLANKEW--VRKFEKPNTAPNSLEP---STTVLSPYLK 105
S +P+ G + L R ++ A + W R E A P +T+ LSPYLK
Sbjct: 169 RSRVPIPSVEGLDGPPLPRAGEAAALRRWREFRDDELAGYADGRDRPDLDATSRLSPYLK 228
Query: 106 FGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQ 165
FGC+ R ++ G +L ++ WR+FY V P+ + + +
Sbjct: 229 FGCIHPRTVLRDIADRTDAGA-----TTLRSELAWRDFYADVLHHRPDTARGNVDHRFDE 283
Query: 166 VDWDTN---EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSW 222
+ D+ ++ EAW+ G+TG+P +DA MRQL EGW+H+ R VA FLT+ DL+L W
Sbjct: 284 LVHDSGPDADRAFEAWAQGRTGFPIVDAGMRQLLAEGWMHNRVRMIVASFLTK-DLHLPW 342
Query: 223 EEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
G F L+D D A N W W + +FRV++P G+K D
Sbjct: 343 WRGARHFMRHLVDGDLASNQHGWQWTAGCGTDAAPYFRVFNPTVQGEKFD 392
>gi|422808697|ref|ZP_16857108.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-208]
gi|378752311|gb|EHY62896.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-208]
Length = 467
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 119/235 (50%), Gaps = 11/235 (4%)
Query: 38 EHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPST 97
E L P +E E + L GE A RL + K + ++K P T
Sbjct: 171 EDLFPKYEEQ-FAEMTCDLPILDSGERAANTRLANFI--KHDIADYDKARDFPEL--DKT 225
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
+ LS YL+ G +S+R + L++ AT A + ++ WR+FY ++ PN
Sbjct: 226 SHLSRYLRTGEISIRTIWQALQETEATEGRA----TFEKELCWRDFYNMIYVSFPNQKNE 281
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ ++W+ N ++ +AW G+TG+P +DA MRQL+ GW+H+ R A FLT+ D
Sbjct: 282 PIQENYRFIEWENNREFFKAWQEGETGFPLVDAAMRQLKETGWMHNRLRMITASFLTK-D 340
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L + W G+ F+++L+D D A N G W W +++ +FR+++P +K D
Sbjct: 341 LLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQAQKFD 395
>gi|293609792|ref|ZP_06692094.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. SH024]
gi|427424953|ref|ZP_18915065.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-136]
gi|292828244|gb|EFF86607.1| deoxyribodipyrimidine photolyase [Acinetobacter sp. SH024]
gi|425698270|gb|EKU67914.1| FAD binding domain of DNA photolyase [Acinetobacter baumannii
WC-136]
Length = 480
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 114/221 (51%), Gaps = 19/221 (8%)
Query: 60 PGGETEALKRLEKSLANKEWVRKFEK--PNTAPNSLEPSTTVLSPYLKFGCLSVR----- 112
P GE AL++L+ + ++ K E+ PN T+ LSPYL G LS+R
Sbjct: 214 PAGENFALEQLDIFIKDRLSDYKLERDFPNVR------GTSQLSPYLNIGILSIRQCLQA 267
Query: 113 LFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK-MKGNKICCQVDWDTN 171
LF E T + + L ++ WREFY + D P+ K + K ++ W+ N
Sbjct: 268 LFRAEHGNFHLTNEGQQ---TWLDELIWREFYQHILFDFPHVSKHIPFKKDTQKIKWNHN 324
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
++L AW G+TG P IDA MRQL GW+H+ R A FL + +L + W G+ F E
Sbjct: 325 PEHLIAWQTGQTGIPIIDAGMRQLLKTGWMHNRVRMITAMFLCK-NLLIDWRVGEQWFME 383
Query: 232 LLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L+D D A N G W W +++ +FR+++P+A KK D
Sbjct: 384 HLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKFD 424
>gi|293397249|ref|ZP_06641522.1| deoxyribodipyrimidine photolyase [Serratia odorifera DSM 4582]
gi|291420269|gb|EFE93525.1| deoxyribodipyrimidine photolyase [Serratia odorifera DSM 4582]
Length = 476
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 104/218 (47%), Gaps = 11/218 (5%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FP GE AL+RL ++ V+ + P T+VLSPYL G LS R + L
Sbjct: 202 FPAGEEAALRRLRHFC--RQQVQDYHHQRDIPAV--DGTSVLSPYLAVGALSPRQCVNRL 257
Query: 119 KK---ILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKI-CCQVDWDTNEKY 174
+ + PH L ++ WREFY + P + + +V W+
Sbjct: 258 RAECPDMLANPHGGA-FCWLNELIWREFYRHLLVANPALCRHRPFIAWTDRVRWNPAADN 316
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
AW G+TGYP +DA MRQL GW+H+ R A FL + DL + W G+ F LL
Sbjct: 317 FLAWQQGRTGYPIVDAAMRQLNQTGWMHNRLRMIAASFLVK-DLLIDWRAGERYFMSQLL 375
Query: 235 DADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D D A N G W W +++ +FR+++P GK+ D
Sbjct: 376 DGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGKRFD 413
>gi|425443748|ref|ZP_18823817.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9443]
gi|389735029|emb|CCI01399.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9443]
Length = 474
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 12/235 (5%)
Query: 41 VPTMKEMGLD-ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTV 99
+PT++ +G ++ +PL GE A RLE+ + +++ P T+
Sbjct: 187 LPTLENLGFTWQNPLPLTP---GEKAASSRLEEFCQGV--INNYQEDRNFPAF--DGTSR 239
Query: 100 LSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFDK 156
LS LKFG + +R + ++L + S++ ++ WREFY P
Sbjct: 240 LSAALKFGAIGIRTIWTATLELLENCRAQEAKDSIITWQQELAWREFYQHCLYFFPELAV 299
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K W NE++ +AW GKTGYP +DA MRQL GW+H+ R VA FLT+
Sbjct: 300 GAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTK- 358
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DL ++W++G+ F + L D D A N G W W ++S + R+++P + +K D
Sbjct: 359 DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQTQKFD 413
>gi|212639063|ref|YP_002315583.1| Deoxyribodipyrimidine photolyase [Anoxybacillus flavithermus WK1]
gi|212560543|gb|ACJ33598.1| Deoxyribodipyrimidine photolyase [Anoxybacillus flavithermus WK1]
Length = 468
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 98/176 (55%), Gaps = 3/176 (1%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSP+LK G LS+R +H + + G + + + + ++ WR+FY+++ + P
Sbjct: 240 TSRLSPHLKTGTLSIRTVFHAVAQQFGNG-YDEAVETYIKELAWRDFYHMIYAHFPFTKT 298
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
+ + W +++ EAW GKTG+P +DA MRQL+ EGW+H+ R A FLT+
Sbjct: 299 EAFIEKYRHLPWSRDDERFEAWKEGKTGFPLVDAGMRQLKEEGWMHNRLRMIAASFLTK- 357
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMW-LSASAFFHQFFRVYSPVAFGKKTD 271
D + W G+ F+ +L+D D A N G W W S +FRV++P+ KK D
Sbjct: 358 DYLIDWRMGEQYFQHMLIDYDEASNIGGWQWAASVGTDAVPYFRVFNPIEQSKKFD 413
>gi|448729676|ref|ZP_21711991.1| deoxyribodipyrimidine photolyase [Halococcus saccharolyticus DSM
5350]
gi|445794978|gb|EMA45516.1| deoxyribodipyrimidine photolyase [Halococcus saccharolyticus DSM
5350]
Length = 466
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 115/237 (48%), Gaps = 15/237 (6%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANK--EWVRKFEKPNTAPNSLEPSTT 98
+P + ++G +E L P G A +RL++ + E+ + E P T+
Sbjct: 175 LPALDDLGFEEPDATLP--PAGTEAARERLDRFCESPIFEYDEEREYPARG------GTS 226
Query: 99 VLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSL---LGQIYWREFYYVVGSDTPNFD 155
LS LK+G + +R L + S+ ++ WREFY V PN
Sbjct: 227 RLSQDLKYGTIGIREVTERTAAALDDAENEDERESVETYREELAWREFYTQVTYYNPNVV 286
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
Q++W + + L AW G+TGYP +DA MRQLR E ++H+ R VA FLT+
Sbjct: 287 TRNYKDYENQIEWREDAEDLAAWKAGETGYPIVDAGMRQLREEAYMHNRVRMIVASFLTK 346
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL L W G F E L+D D A + G W W +++ Q +FR+++P+ G++ D
Sbjct: 347 -DLLLDWRAGYDHFRERLVDHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYD 402
>gi|146293808|ref|YP_001184232.1| deoxyribodipyrimidine photo-lyase [Shewanella putrefaciens CN-32]
gi|145565498|gb|ABP76433.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella putrefaciens
CN-32]
Length = 493
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 124/247 (50%), Gaps = 15/247 (6%)
Query: 32 GILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPN 91
G+ P ++P K + L + + ++ GE +A + L + K V+ +++ P
Sbjct: 184 GVPAPLGPVLPEPKALNLAVNKVSSEQWGAGEGQAKRLLCDFIQQK--VQDYKQDRDFP- 240
Query: 92 SLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG-----QIYWREFYYV 146
+L+ T+ +SPYL G LS R + +L P + LG ++ WREFY
Sbjct: 241 ALD-GTSCISPYLAIGVLSAR---QCVAALLQRFPEVIVDDTSLGRTWLNELVWREFYRH 296
Query: 147 VGSDTPNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLA 205
+ P+ K N+ QV W N + +AW G+TGYP +DA MRQL GW+H+
Sbjct: 297 LLVAFPDLSKNHNFNRQADQVQWRNNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRL 356
Query: 206 RHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPV 264
R VA FLT+ L + W G+ F + L+D D A N G W W + Q +FR+++P+
Sbjct: 357 RMVVASFLTK-HLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPM 415
Query: 265 AFGKKTD 271
+ +K D
Sbjct: 416 SQSEKFD 422
>gi|330991596|ref|ZP_08315547.1| Cryptochrome-2 [Gluconacetobacter sp. SXCC-1]
gi|329761615|gb|EGG78108.1| Cryptochrome-2 [Gluconacetobacter sp. SXCC-1]
Length = 465
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 108/211 (51%), Gaps = 9/211 (4%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GE A RL +A + + + + P P+T+ LSP L+FG +S R +H ++
Sbjct: 208 GEQAAHARLATFMATR--LPGYARLRDLPA--RPATSGLSPCLRFGHISPRQIWHAVE-- 261
Query: 122 LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
A G + L ++ WR+F + D P+ ++ W T+ L AW G
Sbjct: 262 -AQGDVDADGMCFLSEVGWRDFAHATLFDCPDMATRSLRPEYDRMPWRTDPAGLRAWQQG 320
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
+TGYP +DA MR+L GW+H+ R VA FLT+ L L W G+ F + L+DAD A N
Sbjct: 321 RTGYPIVDAGMRELWHTGWMHNRVRMIVASFLTK-HLLLDWRAGERWFADTLVDADGASN 379
Query: 242 AGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
NW W++ +FR+++PV G+K D
Sbjct: 380 PFNWQWVAGCGLDAAPYFRIFNPVLQGEKFD 410
>gi|288553212|ref|YP_003425147.1| deoxyribodipyrimidine photolyase PhrB [Bacillus pseudofirmus OF4]
gi|298286845|sp|Q04449.2|PHR_BACPE RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|288544372|gb|ADC48255.1| Deoxyribodipyrimidine photolyase, FAD-binding PhrB [Bacillus
pseudofirmus OF4]
Length = 479
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 115/213 (53%), Gaps = 11/213 (5%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVR-LFYHELKK 120
GE A+KRL+ + K+ + ++ P+ T+ LSPY+K G +S R ++YH
Sbjct: 210 GEEHAIKRLQ--MFTKKRLSGYKANRDFPSIT--GTSRLSPYIKTGAVSSRSIYYH---- 261
Query: 121 ILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSH 180
IL + + L ++ WR+FY +V P+ + + +++W ++ L +W
Sbjct: 262 ILNAEADSYSAETFLKELAWRDFYRMVHFYEPDCKDREIMEGYRELNWSHDQDDLTSWKR 321
Query: 181 GKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAM 240
G+TG+P +DA MRQL EGW+H+ R A FLT+ DL + W G+ FE +L+D D +
Sbjct: 322 GETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTK-DLLIDWRLGERYFERMLIDYDPSS 380
Query: 241 NAGNWMW-LSASAFFHQFFRVYSPVAFGKKTDK 272
N G W W S +FR+++PV K+ D+
Sbjct: 381 NIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDE 413
>gi|359148080|ref|ZP_09181316.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. S4]
gi|421739387|ref|ZP_16177699.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SM8]
gi|406692211|gb|EKC95920.1| deoxyribodipyrimidine photolyase [Streptomyces sp. SM8]
Length = 457
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 105/214 (49%), Gaps = 15/214 (7%)
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKK 120
GGE+E RL L + + + A ++ T+ LSP+L FG LS H ++
Sbjct: 198 GGESEGRDRLTAWLRRDAGAYEDQHDDLAGDA----TSRLSPHLHFGTLSAAELVHRARR 253
Query: 121 ILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN---EKYLEA 177
GP A + Q+ WR+F++ V + P D + + W T E+ EA
Sbjct: 254 KEGAGPAA-----FVRQLCWRDFHHQVLAARP--DASHADYRAREDHWRTGRDAEQETEA 306
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W G+TGYP +DA MRQL EGW+H+ R A FL++ LY+ W G F LL+D D
Sbjct: 307 WREGRTGYPIVDAAMRQLAHEGWMHNRGRLLAASFLSK-TLYVDWRTGADHFLSLLVDGD 365
Query: 238 WAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
A N NW W++ + + RV +PV + D
Sbjct: 366 IANNQMNWQWVAGTGTDTRPHRVLNPVRQAHRYD 399
>gi|329115122|ref|ZP_08243877.1| Deoxyribodipyrimidine photo-lyase [Acetobacter pomorum DM001]
gi|326695565|gb|EGE47251.1| Deoxyribodipyrimidine photo-lyase [Acetobacter pomorum DM001]
Length = 522
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 96/178 (53%), Gaps = 3/178 (1%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPH-AKPPVSLLGQIYWREFYYVVGSDTPNF 154
T++LSPY++ G +SVR +H ++ P A L ++ WR+F ++ TP+
Sbjct: 290 GTSLLSPYIRVGQISVRQIWHAIRHAAHLHPQLATDAEKFLAELGWRDFAWMQMFTTPDL 349
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
+ W T+ L AW G+TG+P +DA MRQL GW+H+ R VA FLT
Sbjct: 350 ATRNLRAEFNHMPWRTDATDLAAWQQGQTGFPLVDAGMRQLARTGWMHNRVRMVVASFLT 409
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
+ L W++G+ F LLDAD A+NA NW W + + +FR+++PV +K D
Sbjct: 410 K-HLLTDWQKGERWFYAHLLDADAAVNAMNWQWGAGTGIDAAPWFRIFNPVGQSEKYD 466
>gi|312903342|ref|ZP_07762522.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0635]
gi|422689333|ref|ZP_16747445.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0630]
gi|310633218|gb|EFQ16501.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0635]
gi|315577672|gb|EFU89863.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0630]
Length = 477
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 113/221 (51%), Gaps = 10/221 (4%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
+ IPL + GE A + L + K +R +E P + T+ LS +L+ G LS+
Sbjct: 189 ARIPLKHYSVGEKTARRCLNTFIDQK--LRSYENKRDFP--YQDQTSHLSTFLRTGELSI 244
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R + EL A+ P + + ++ WR+FY ++ S P + + + W +
Sbjct: 245 RTIWQEL----ASMPSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWTND 300
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+ F++
Sbjct: 301 PEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEKYFQK 359
Query: 232 LLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 360 MLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 400
>gi|2126786|pir||I39818 deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) - Bacillus firmus
(fragment)
gi|142783|gb|AAA22361.1| DNA photolyase, partial [Bacillus firmus]
Length = 339
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 115/213 (53%), Gaps = 11/213 (5%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVR-LFYHELKK 120
GE A+KRL+ + K+ + ++ P+ T+ LSPY+K G +S R ++YH
Sbjct: 70 GEEHAIKRLQ--MFTKKRLSGYKANRDFPSIT--GTSRLSPYIKTGAVSSRSIYYH---- 121
Query: 121 ILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSH 180
IL + + L ++ WR+FY +V P+ + + +++W ++ L +W
Sbjct: 122 ILNAEADSYSAETFLKELAWRDFYRMVHFYEPDCKDREIMEGYRELNWSHDQDDLTSWKR 181
Query: 181 GKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAM 240
G+TG+P +DA MRQL EGW+H+ R A FLT+ DL + W G+ FE +L+D D +
Sbjct: 182 GETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTK-DLLIDWRLGERYFERMLIDYDPSS 240
Query: 241 NAGNWMW-LSASAFFHQFFRVYSPVAFGKKTDK 272
N G W W S +FR+++PV K+ D+
Sbjct: 241 NIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDE 273
>gi|78778672|ref|YP_396784.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
str. MIT 9312]
gi|78712171|gb|ABB49348.1| deoxyribodipyrimidine photo-lyase type I [Prochlorococcus marinus
str. MIT 9312]
Length = 478
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 120/247 (48%), Gaps = 9/247 (3%)
Query: 28 RECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPN 87
+E + I D L +K + S+I C+ GE A LEK N++ + +
Sbjct: 183 KENKLINSSDSTLKKFLKNIKFSGSNICPCR--PGENGAEILLEK-FINEKNIYSYNSAR 239
Query: 88 TAPNSLEPSTTVLSPYLKFGCLSVRLFYH---ELKKILATGPHAKPPVSLLGQIYWREFY 144
P+ T+ LS L+FG +S+R ++ +L + ++ + ++ WREFY
Sbjct: 240 DLPS--HNGTSFLSASLRFGTISIRKVWNATLDLNSDFESHENSLSIETWQKELVWREFY 297
Query: 145 YVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHL 204
P +K K Q W N ++ + WS+G+TG P +DA MRQL GW+H+
Sbjct: 298 QHCLFHFPELEKGPYRKKWGQFPWQNNNEWFQHWSNGETGVPIVDAAMRQLNSTGWMHNR 357
Query: 205 ARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPV 264
R VA FL + DL SW+ G+ F E L+D D A N G W W ++S + R+++P
Sbjct: 358 CRMIVASFLVK-DLICSWQMGEKKFMETLVDGDLAANNGGWQWSASSGMDPKPLRIFNPY 416
Query: 265 AFGKKTD 271
KK D
Sbjct: 417 TQAKKFD 423
>gi|429121966|ref|ZP_19182570.1| Deoxyribodipyrimidine photolyase [Cronobacter sakazakii 680]
gi|426323525|emb|CCK13307.1| Deoxyribodipyrimidine photolyase [Cronobacter sakazakii 680]
Length = 473
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 104/217 (47%), Gaps = 11/217 (5%)
Query: 59 FPGGETEALKRLEK--SLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
FP GE ALKRL + A ++ K + P T++LS YL G LS R H
Sbjct: 203 FPAGEEAALKRLREFCQTAAGDYPEKRDFPAIR------GTSLLSAYLAIGVLSPRQCLH 256
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYL 175
L L ++ WREFY + P+ + + +V W N+ +
Sbjct: 257 RLLTEHPRALEGGSGAVWLNELIWREFYRHLIVAWPHLCRHQPFIDWTARVAWQQNDAHF 316
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
+AW G TGYP +DA MRQ+ GW+H+ R A FL + DL + W G+ F L+D
Sbjct: 317 QAWCEGNTGYPIVDAAMRQMNATGWMHNRLRMITASFLVK-DLLVDWRRGERYFMSQLID 375
Query: 236 ADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D+A N G W W +++ +FR+++P G++ D
Sbjct: 376 GDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFD 412
>gi|343509312|ref|ZP_08746596.1| deoxyribodipyrimidine photolyase [Vibrio scophthalmi LMG 19158]
gi|342805079|gb|EGU40359.1| deoxyribodipyrimidine photolyase [Vibrio scophthalmi LMG 19158]
Length = 483
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 103/188 (54%), Gaps = 18/188 (9%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQ--------IYWREFYYVV 147
+T++LSPYL G LSVR + ++L + + LLG+ + WR+FY +
Sbjct: 242 ATSMLSPYLAIGALSVR---QCVARVLYSAQAHQITSPLLGEGIHTWISELVWRDFYQHL 298
Query: 148 GSDTPNFDKMKGNKICC---QVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHL 204
P KG ++ W ++++L AW G TGYP +DA MRQL GW+H+
Sbjct: 299 LHFEPKL--CKGRHFVTWTEKLHWPGSKQHLAAWQKGMTGYPIVDAAMRQLNQTGWMHNR 356
Query: 205 ARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSP 263
R VA FLT+ DL+L W G+ F + L+D D+A N G W W +++ Q +FR+++P
Sbjct: 357 LRMVVASFLTK-DLHLHWHHGERYFMQKLVDGDYAANNGGWQWSASTGCDAQPYFRIFNP 415
Query: 264 VAFGKKTD 271
A G++ D
Sbjct: 416 TAQGERFD 423
>gi|307278038|ref|ZP_07559122.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0860]
gi|306505435|gb|EFM74621.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0860]
Length = 477
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 113/221 (51%), Gaps = 10/221 (4%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
+ IPL + GE A + L + K +R +E P + T+ LS +L+ G LS+
Sbjct: 189 ARIPLKHYSVGEKTARRCLNTFIDQK--LRSYENKRDFP--YQDQTSHLSTFLRTGELSI 244
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R + EL A+ P + + ++ WR+FY ++ S P + + + W +
Sbjct: 245 RTIWQEL----ASMPSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWTND 300
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+ F++
Sbjct: 301 PEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEKYFQK 359
Query: 232 LLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 360 MLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 400
>gi|45387783|ref|NP_991249.1| cryptochrome DASH [Danio rerio]
gi|41688004|dbj|BAD08600.1| cryptochrome dash [Danio rerio]
Length = 520
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 122/252 (48%), Gaps = 14/252 (5%)
Query: 2 TYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPL--CK- 58
Y + +E+ + +P P + G+ +E +PT +G E PL C+
Sbjct: 158 VYTQFRKAVEAQGRVRPVLSTPEQVKSPPSGL---EEGPIPTFDSLGQTE---PLDDCRS 211
Query: 59 -FP--GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY 115
FP GGETEAL RL+ + V +++ ++ ST SP+L GC+S R Y
Sbjct: 212 AFPCRGGETEALARLKHYFWDTNAVATYKETRNGMIGVDFSTK-FSPWLALGCISPRYIY 270
Query: 116 HELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
++KK + ++ ++ WR+++ V N V W T+ K
Sbjct: 271 EQIKKYEVERTANQSTYWVIFELLWRDYFKFVALKYGNRIFYMNGLQDKHVPWKTDMKMF 330
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
+AW G+TG PF+DA MR+L L G++ + R VA FLT+ DL L W G FE LL+D
Sbjct: 331 DAWKEGRTGVPFVDANMRELALTGFMSNRGRQNVASFLTK-DLGLDWRLGAEWFEYLLVD 389
Query: 236 ADWAMNAGNWMW 247
D N GNW++
Sbjct: 390 HDVCSNYGNWLY 401
>gi|269962802|ref|ZP_06177143.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269832492|gb|EEZ86610.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 471
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 100/180 (55%), Gaps = 9/180 (5%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPH---AKPPVSLLGQIYWREFYYVVGSDTPN 153
T+ LSPYL G LS R + ++ A P + + L +I WREFY + P
Sbjct: 238 TSQLSPYLAIGALSPR---QCIARLYAENPLPDLTEGKATWLSEIIWREFYQHLLVFEPK 294
Query: 154 FDKMKGNKICCQ-VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
+ KG + + W +E+ E W G TGYP +DA MRQL + GW+H+ R VA F
Sbjct: 295 LVRGKGFIPWEEKIQWSYDEQAFERWKTGTTGYPIVDAAMRQLNMTGWMHNRLRMVVASF 354
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
LT+ DL++ W G++ F L+D D+A N G W W +++ Q +FR+++P++ G+K D
Sbjct: 355 LTK-DLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFD 413
>gi|386314555|ref|YP_006010720.1| deoxyribodipyrimidine photo-lyase [Shewanella putrefaciens 200]
gi|319427180|gb|ADV55254.1| Deoxyribodipyrimidine photo-lyase [Shewanella putrefaciens 200]
Length = 493
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 125/247 (50%), Gaps = 15/247 (6%)
Query: 32 GILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPN 91
G+ P ++P K + L + + ++ GE +A KRL ++ V+ +++ P
Sbjct: 184 GVPAPLGPVLPEPKALNLAVNKVSSEQWGAGEGQA-KRLLCDFVQQK-VQDYKQDRDFP- 240
Query: 92 SLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG-----QIYWREFYYV 146
+L+ T+ +SPYL G LS R + +L P + LG ++ WREFY
Sbjct: 241 ALD-GTSCISPYLAIGVLSAR---QCVAALLQRFPEVIVDDTSLGRTWLNELVWREFYRH 296
Query: 147 VGSDTPNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLA 205
+ P+ K N+ QV W N + +AW G+TGYP +DA MRQL GW+H+
Sbjct: 297 LLVAFPDLSKNHNFNRQADQVQWRNNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRL 356
Query: 206 RHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPV 264
R VA FLT+ L + W G+ F + L+D D A N G W W + Q +FR+++P+
Sbjct: 357 RMVVASFLTK-HLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPM 415
Query: 265 AFGKKTD 271
+ +K D
Sbjct: 416 SQSEKFD 422
>gi|389841719|ref|YP_006343803.1| deoxyribodipyrimidine photolyase [Cronobacter sakazakii ES15]
gi|387852195|gb|AFK00293.1| deoxyribodipyrimidine photolyase [Cronobacter sakazakii ES15]
Length = 473
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 104/217 (47%), Gaps = 11/217 (5%)
Query: 59 FPGGETEALKRLEK--SLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
FP GE ALKRL + A ++ K + P T++LS YL G LS R H
Sbjct: 203 FPAGEEAALKRLREFCQTAAGDYPEKRDFPAIR------GTSLLSAYLAIGVLSPRQCLH 256
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYL 175
L L ++ WREFY + P+ + + +V W N+ +
Sbjct: 257 RLLTEHPRALEGGSGAVWLNELIWREFYRHLIVAWPHLCRHQPFIDWTARVAWQQNDAHF 316
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
+AW G TGYP +DA MRQ+ GW+H+ R A FL + DL + W G+ F L+D
Sbjct: 317 QAWCEGNTGYPIVDAAMRQMNATGWMHNRLRMITASFLVK-DLLVDWRRGERYFMSQLID 375
Query: 236 ADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D+A N G W W +++ +FR+++P G++ D
Sbjct: 376 GDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFD 412
>gi|255975817|ref|ZP_05426403.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T2]
gi|255968689|gb|EET99311.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T2]
Length = 473
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 113/221 (51%), Gaps = 10/221 (4%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
+ IPL + GE A + L + K +R +E P + T+ LS +L+ G LS+
Sbjct: 185 ARIPLKHYSVGEKTARRCLNTFIDQK--LRSYENKRDFP--YQDQTSHLSTFLRTGELSI 240
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R + EL A+ P + + ++ WR+FY ++ S P + + + W +
Sbjct: 241 RTIWQEL----ASMPSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWTND 296
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+ F++
Sbjct: 297 PEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEKYFQK 355
Query: 232 LLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTD 271
+L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 356 MLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 396
>gi|119773948|ref|YP_926688.1| deoxyribodipyrimidine photo-lyase [Shewanella amazonensis SB2B]
gi|119766448|gb|ABL99018.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella amazonensis
SB2B]
Length = 475
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 110/226 (48%), Gaps = 21/226 (9%)
Query: 56 LCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPS---TTVLSPYLKFGCLSVR 112
L K+P G+ AL++L + R+ N P+ T+ LSPYL G +S R
Sbjct: 202 LDKWPVGQDAALEKLSR-------FRELGMGRYGENRDFPAIDGTSSLSPYLALGVISPR 254
Query: 113 LFYHELKKILATGP-----HAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQV 166
L +L P + P L ++ WREFY + P K N + +
Sbjct: 255 ---QCLAALLEDFPDVFVNESSPARPWLNELVWREFYRHLLVAFPGLSMAKNFNPLGDGI 311
Query: 167 DWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQ 226
W +E EAW HG+TGYP +DA MRQL GW+H+ R VA FLT+ L + W G+
Sbjct: 312 RWRNDETEFEAWKHGRTGYPLVDAAMRQLNQTGWMHNRLRMVVASFLTK-HLLIDWRWGE 370
Query: 227 SVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
F E L+D A N G W W + + Q +FR+++P++ +K D
Sbjct: 371 RYFREQLIDGCLAANNGGWQWAAGTGCDAQPYFRIFNPMSQSEKFD 416
>gi|417791419|ref|ZP_12438873.1| deoxyribodipyrimidine photolyase [Cronobacter sakazakii E899]
gi|429114619|ref|ZP_19175537.1| Deoxyribodipyrimidine photolyase [Cronobacter sakazakii 701]
gi|449309009|ref|YP_007441365.1| deoxyribodipyrimidine photolyase [Cronobacter sakazakii SP291]
gi|333954430|gb|EGL72278.1| deoxyribodipyrimidine photolyase [Cronobacter sakazakii E899]
gi|426317748|emb|CCK01650.1| Deoxyribodipyrimidine photolyase [Cronobacter sakazakii 701]
gi|449099042|gb|AGE87076.1| deoxyribodipyrimidine photolyase [Cronobacter sakazakii SP291]
Length = 473
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 104/217 (47%), Gaps = 11/217 (5%)
Query: 59 FPGGETEALKRLEK--SLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
FP GE ALKRL + A ++ K + P T++LS YL G LS R H
Sbjct: 203 FPAGEEAALKRLREFCQTAAGDYPEKRDFPAIR------GTSLLSAYLAIGVLSPRQCLH 256
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYL 175
L L ++ WREFY + P+ + + +V W N+ +
Sbjct: 257 RLLTEHPRALEGGSGAVWLNELIWREFYRHLIVAWPHLCRHQPFIDWTARVAWQQNDAHF 316
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
+AW G TGYP +DA MRQ+ GW+H+ R A FL + DL + W G+ F L+D
Sbjct: 317 QAWCEGNTGYPIVDAAMRQMNATGWMHNRLRMITASFLVK-DLLVDWRRGERYFMSQLID 375
Query: 236 ADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D+A N G W W +++ +FR+++P G++ D
Sbjct: 376 GDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFD 412
>gi|260901113|ref|ZP_05909508.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ4037]
gi|308109383|gb|EFO46923.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ4037]
Length = 471
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 100/184 (54%), Gaps = 17/184 (9%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPH---AKPPVSLLGQIYWREFYYVVGSDTPN 153
T+ LSPYL G LS R + ++ A P ++ + L +I WREFY + P
Sbjct: 238 TSQLSPYLAIGALSPR---QCIARLYAENPQPDLSEGKATWLSEIIWREFYQHLLVFEPK 294
Query: 154 FDKMKG-----NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHA 208
K +G +KI W +E+ E W G TGYP +DA MRQL GW+H+ R
Sbjct: 295 LVKGRGFIDWEDKI----QWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMI 350
Query: 209 VACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFG 267
VA FLT+ DL++ W G+ F L+D D+A N G W W +++ Q +FR+++P++ G
Sbjct: 351 VASFLTK-DLHIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQG 409
Query: 268 KKTD 271
+K D
Sbjct: 410 EKFD 413
>gi|156934798|ref|YP_001438714.1| deoxyribodipyrimidine photolyase [Cronobacter sakazakii ATCC
BAA-894]
gi|156533052|gb|ABU77878.1| hypothetical protein ESA_02638 [Cronobacter sakazakii ATCC BAA-894]
Length = 473
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 104/217 (47%), Gaps = 11/217 (5%)
Query: 59 FPGGETEALKRLEK--SLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
FP GE ALKRL + A ++ K + P T++LS YL G LS R H
Sbjct: 203 FPAGEEAALKRLREFCQTAAGDYPEKRDFPAIR------GTSLLSAYLAIGVLSPRQCLH 256
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYL 175
L L ++ WREFY + P+ + + +V W N+ +
Sbjct: 257 RLLTEHPRALEGGSGAVWLNELIWREFYRHLIVAWPHLCRHQPFIDWTARVAWQQNDAHF 316
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
+AW G TGYP +DA MRQ+ GW+H+ R A FL + DL + W G+ F L+D
Sbjct: 317 QAWCEGNTGYPIVDAAMRQMNATGWMHNRLRMITASFLVK-DLLVDWRRGERYFMSQLID 375
Query: 236 ADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D+A N G W W +++ +FR+++P G++ D
Sbjct: 376 GDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGQRFD 412
>gi|746118|prf||2017201A DNA photolyase
Length = 486
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 115/213 (53%), Gaps = 11/213 (5%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVR-LFYHELKK 120
GE A+KRL+ + K+ + ++ P+ T+ LSPY+K G +S R ++YH
Sbjct: 217 GEEHAIKRLQ--MFTKKRLSGYKANRDFPSIT--GTSRLSPYIKTGAVSSRSIYYH---- 268
Query: 121 ILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSH 180
IL + + L ++ WR+FY +V P+ + + +++W ++ L +W
Sbjct: 269 ILNAEADSYSAETFLKELAWRDFYRMVHFYEPDCKDREIMEGYRELNWSHDQDDLTSWKR 328
Query: 181 GKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAM 240
G+TG+P +DA MRQL EGW+H+ R A FLT+ DL + W G+ FE +L+D D +
Sbjct: 329 GETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTK-DLLIDWRLGERYFERMLIDYDPSS 387
Query: 241 NAGNWMW-LSASAFFHQFFRVYSPVAFGKKTDK 272
N G W W S +FR+++PV K+ D+
Sbjct: 388 NIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDE 420
>gi|448568084|ref|ZP_21637692.1| deoxyribodipyrimidine photolyase [Haloferax lucentense DSM 14919]
gi|445727546|gb|ELZ79157.1| deoxyribodipyrimidine photolyase [Haloferax lucentense DSM 14919]
Length = 484
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 114/234 (48%), Gaps = 10/234 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+PT+ ++G +E S + G A +RL A+ + ++ P +T+ L
Sbjct: 194 LPTISDLGFEEPSASVQS--AGTEAARERLSAFCADA--IYRYADDRDYPT--RDATSRL 247
Query: 101 SPYLKFGCLSVRLFYHELKKIL--ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMK 158
S LKFG + +R Y G + Q+ WREFY V + PN
Sbjct: 248 STDLKFGTIGIREVYAATAAAREGVGGERDESVEEFQSQLAWREFYAHVLREHPNVVTEN 307
Query: 159 GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
+ + W +++ L AW G+TGYP +DA MRQLR E ++H+ R VA FLT+ DL
Sbjct: 308 YKEYEEDIAWRDDDEELAAWKAGETGYPIVDAGMRQLREEAYMHNRVRMIVASFLTK-DL 366
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
W G + F E L D D A + G W W +++ Q +FR+++P+ G++ D
Sbjct: 367 LCDWRHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYD 420
>gi|417711314|ref|ZP_12360320.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-272]
gi|417715768|ref|ZP_12364702.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-227]
gi|333010183|gb|EGK29618.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-272]
gi|333021140|gb|EGK40397.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-227]
Length = 472
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 115/227 (50%), Gaps = 13/227 (5%)
Query: 51 ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLS 110
S FP E A+ +L + N ++E+ P ++E T+ LS L G LS
Sbjct: 193 RQSFDTAHFPVEEKAAIAQLRQFCENG--AGEYEQQRDFP-AVE-GTSRLSASLATGGLS 248
Query: 111 VRLFYHELKKILATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKI-CCQV 166
R H ++LA P A L ++ WREFY + + P+ K + + +V
Sbjct: 249 PRQCLH---RLLAEQPQALDGGAGSVWLSELIWREFYRHLMTYYPSLCKHRPFIVWTDRV 305
Query: 167 DWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQ 226
W +N +L+AW GKTGYP IDA MRQL GW+H+ R A FL + DL + W EG+
Sbjct: 306 QWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLRMITASFLVK-DLLIDWREGE 364
Query: 227 SVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
F L+D D A N G W W +++ +FR+++P+ G+K D+
Sbjct: 365 RYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGEKFDR 411
>gi|298708262|emb|CBJ48325.1| cryptochrome 2 [Ectocarpus siliculosus]
Length = 571
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 121/246 (49%), Gaps = 14/246 (5%)
Query: 13 LPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGL----DESSIPLCKFPGGETEALK 68
+P P P PT ++ P +PT +E+GL + + + F GGET L+
Sbjct: 209 VPLPSPFRPVPTGTTQDDGEASAPGA--IPTTEELGLGTAPERDARSVFPFNGGETAGLR 266
Query: 69 RLEKSLANKEWVRKFEKPNTAPNSLEPS--TTVLSPYLKFGCLSVRLFYHELKKILATGP 126
R++ + +++ +R+++ N L S ++ SP+L GCLS R E++K
Sbjct: 267 RVQSYIWDEDRLREYK---VTRNGLLGSGFSSKFSPWLALGCLSPRTIVKEIRKYETDRI 323
Query: 127 HAKPPVSLLGQIYWREF--YYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTG 184
L+ ++ WR+F Y V + F + + W + LEAW G+TG
Sbjct: 324 ANDSTYWLIFELLWRDFFRYSAVKNGNSIFHLGGPRRDTGRQRWLDDAGSLEAWKEGETG 383
Query: 185 YPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGN 244
YP IDA MR+L+ G++ + R VA F TR DL + W G FEE LLD D A N GN
Sbjct: 384 YPLIDANMRELKASGFMSNRGRQVVASFFTR-DLQMDWRLGAEHFEEYLLDHDPASNWGN 442
Query: 245 WMWLSA 250
W +++
Sbjct: 443 WNYVAG 448
>gi|58039440|ref|YP_191404.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
gi|58001854|gb|AAW60748.1| Deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
Length = 479
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 104/211 (49%), Gaps = 9/211 (4%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GE E + LE L N V + P E T+ LSPYL G +S R + L+K
Sbjct: 213 GEAEGQEHLEDFLKNS--VAGY--PRGRDRVAEEGTSRLSPYLASGAVSPRQVWAALQK- 267
Query: 122 LATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
G H P L ++ WREF P + + W + L+AW G
Sbjct: 268 --HGAHTDGPRIFLSELGWREFARYTLYHLPKLPFENLSPKFSGMHWRRSAADLKAWQRG 325
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
+TG P +DA MRQL GW+H+ AR V FLT+ L + W+EG + F + L+DAD+A N
Sbjct: 326 QTGVPIVDAGMRQLWQTGWMHNRARMIVGSFLTK-HLLIDWKEGDAWFRDTLVDADFANN 384
Query: 242 AGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
A NW W++ + FFR+++P +K D
Sbjct: 385 AMNWQWVAGTGIEATPFFRIFNPTRQAEKFD 415
>gi|414173991|ref|ZP_11428618.1| hypothetical protein HMPREF9695_02264 [Afipia broomeae ATCC 49717]
gi|410890625|gb|EKS38424.1| hypothetical protein HMPREF9695_02264 [Afipia broomeae ATCC 49717]
Length = 484
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 131/271 (48%), Gaps = 16/271 (5%)
Query: 5 KLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKE--MGLDESSIPLCKFPGG 62
K V L P+P PA A T+ P+ L +L PT + GL E+ P G
Sbjct: 160 KRVLSLGDPPQPLPAPKALTAGPKIATDDLA-SWNLEPTRPDWASGLRETWTP------G 212
Query: 63 ETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKIL 122
E A KRL+ L N + + P+ +T+ LSP+L+FG +S R +H
Sbjct: 213 EAAAQKRLKDFLDND--IASYASLRDRPD--RDATSRLSPHLRFGEISPRQVWHSASFAA 268
Query: 123 ATGPHAKPPVS-LLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
A P V+ L ++ WREF + D P + W ++ K L AW G
Sbjct: 269 AGKPAISSSVAKFLSELGWREFSRHLLFDHPQLAERNLQSSFDAFPWHSDPKALRAWQRG 328
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
+TGYP +DA MR+L G +H+ R VA FL + L + W +G+ F + L+DAD N
Sbjct: 329 QTGYPIVDAGMRELWHTGIMHNRVRMVVASFLVK-HLLIDWRDGEKWFWDTLVDADPGSN 387
Query: 242 AGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
+W W++ S A +FRV++P+ G+K D
Sbjct: 388 PASWQWVAGSGADAAPYFRVFNPILQGEKFD 418
>gi|255022957|ref|ZP_05294943.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-208]
Length = 246
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 100/176 (56%), Gaps = 6/176 (3%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LS YL+ G +S+R + L++ AT A + ++ WR+FY ++ PN
Sbjct: 4 TSHLSRYLRTGEISIRTIWQALQETEATEGRA----TFEKELCWRDFYNMIYVSFPNQKN 59
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
+ ++W+ N ++ +AW G+TG+P +DA MRQL+ GW+H+ R A FLT+
Sbjct: 60 EPIQENYRFIEWENNREFFKAWQEGETGFPLVDAAMRQLKETGWMHNRLRMITASFLTK- 118
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL + W G+ F+++L+D D A N G W W +++A +FR+++P +K D
Sbjct: 119 DLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTATDAVPYFRIFNPTTQAQKFD 174
>gi|422303261|ref|ZP_16390615.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9806]
gi|389791796|emb|CCI12426.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9806]
Length = 474
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 118/235 (50%), Gaps = 12/235 (5%)
Query: 41 VPTMKEMGLD-ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTV 99
+PT++ +G ++ +PL GE A RLE+ + +++ P T+
Sbjct: 187 LPTLENLGFTWQNPLPLTP---GEKAAHSRLEEFCQGV--INNYQEDRNFPAF--DGTSR 239
Query: 100 LSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFDK 156
LS LKFG + +R + ++L + S++ ++ WREFY P +
Sbjct: 240 LSAALKFGAIGIRTIWTATLELLENCRAEEAKNSIITWQQELAWREFYQHCLYFFPELAE 299
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K W NE++ +AW G+TGYP +DA MRQL GW+H+ R VA FLT+
Sbjct: 300 GAYRKEFRHFPWQDNEEHFQAWCQGQTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTK- 358
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DL ++W++G+ F + L D D A N G W W ++S + R+++P + +K D
Sbjct: 359 DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQTQKFD 413
>gi|422408691|ref|ZP_16485652.1| deoxyribodipyrimidine photo-lyase, partial [Listeria monocytogenes
FSL F2-208]
gi|313610351|gb|EFR85579.1| deoxyribodipyrimidine photo-lyase [Listeria monocytogenes FSL
F2-208]
Length = 467
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 119/235 (50%), Gaps = 11/235 (4%)
Query: 38 EHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPST 97
E L P +E E + L GE A RL + K + ++K P T
Sbjct: 171 ESLFPKYEEQ-FAEMTCDLPILDSGERAANTRLANFI--KHDIADYDKARDFPEL--DKT 225
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
+ LS YL+ G +S+R + L++ AT A + ++ WR+FY ++ PN
Sbjct: 226 SHLSRYLRTGEISIRTIWQALQETEATEGRA----TFEKELCWRDFYNMIYVSFPNQKNE 281
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ ++W+ N ++ +AW G+TG+P +DA MRQL+ GW+H+ R A FLT+ D
Sbjct: 282 PIQENYRFIEWENNREFFKAWQEGETGFPLVDAAMRQLKETGWMHNRLRMITASFLTK-D 340
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTD 271
L + W G+ F+++L+D D A N G W W +++ +FR+++P +K D
Sbjct: 341 LLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395
>gi|433427372|ref|ZP_20407032.1| deoxyribodipyrimidine photolyase, partial [Haloferax sp. BAB2207]
gi|432196390|gb|ELK52848.1| deoxyribodipyrimidine photolyase, partial [Haloferax sp. BAB2207]
Length = 400
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 114/234 (48%), Gaps = 10/234 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+PT+ ++G +E S + G A +RL A+ + ++ P +T+ L
Sbjct: 110 LPTISDLGFEEPSASVQS--AGTEAARERLSAFCADA--IYRYADDRDYPTR--DATSRL 163
Query: 101 SPYLKFGCLSVRLFYHELKKIL--ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMK 158
S LKFG + +R Y G + Q+ WREFY V + PN
Sbjct: 164 STDLKFGTIGIREVYAATAAAREGVGGERDESVEEFQSQLAWREFYAHVLREHPNVVTEN 223
Query: 159 GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
+ + W +++ L AW G+TGYP +DA MRQLR E ++H+ R VA FLT+ DL
Sbjct: 224 YKEYEEDIAWRDDDEELAAWKAGETGYPIVDAGMRQLREEAYMHNRVRMIVASFLTK-DL 282
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
W G + F E L D D A + G W W +++ Q +FR+++P+ G++ D
Sbjct: 283 LCDWRHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYD 336
>gi|15888554|ref|NP_354235.1| DNA photolyase [Agrobacterium fabrum str. C58]
gi|15156266|gb|AAK87020.1| DNA photolyase [Agrobacterium fabrum str. C58]
Length = 479
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 120/233 (51%), Gaps = 11/233 (4%)
Query: 40 LVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTV 99
L+PT + D S I + GET AL +L+ + ++ +E+ P +P+T++
Sbjct: 189 LLPTKPDWAKDFSDI----WTPGETGALDKLDDFIDGA--LKGYEEGRDFP--AKPATSL 240
Query: 100 LSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG 159
LSP+L G +S +H K L+ + +I WREF Y + P +
Sbjct: 241 LSPHLAAGEISPAAVWHATKG-LSRHIASNDISRFRKEIVWREFCYHLLFHFPELGEKNW 299
Query: 160 NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLY 219
N W +EK +AW+ G TGYP +DA MRQL G +H+ R VA FL + L
Sbjct: 300 NDSFDAFSWRDDEKSFKAWTRGMTGYPIVDAGMRQLWQHGTMHNRVRMIVASFLIK-HLL 358
Query: 220 LSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
+ W +G+ F + L+DAD A NA NW W++ S A FFR+++P+ G+K D
Sbjct: 359 IDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGEKFD 411
>gi|425438323|ref|ZP_18818728.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9432]
gi|440755927|ref|ZP_20935128.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa TAIHU98]
gi|389676549|emb|CCH94466.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9432]
gi|440173149|gb|ELP52607.1| deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa TAIHU98]
Length = 474
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 12/235 (5%)
Query: 41 VPTMKEMGLD-ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTV 99
+PT++ +G ++ +PL GE A RLE+ + +++ P T+
Sbjct: 187 LPTLENLGFTWQNPLPLTP---GEKAADSRLEEFCQGV--INNYQEDRNFPAF--DGTSR 239
Query: 100 LSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFDK 156
LS LKFG + +R + ++L + S++ ++ WREFY P
Sbjct: 240 LSAALKFGAIGIRTIWTATLELLENCRAEEAKNSIITWQQELAWREFYQHCLYFFPELAV 299
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K W NE++ +AW GKTGYP +DA MRQL GW+H+ R VA FLT+
Sbjct: 300 GAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTK- 358
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DL ++W++G+ F + L D D A N G W W ++S + R+++P + +K D
Sbjct: 359 DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQTQKFD 413
>gi|28901326|ref|NP_800981.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
2210633]
gi|260362883|ref|ZP_05775752.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus K5030]
gi|260880171|ref|ZP_05892526.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AN-5034]
gi|260895288|ref|ZP_05903784.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus
Peru-466]
gi|28809873|dbj|BAC62814.1| deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus RIMD
2210633]
gi|308085662|gb|EFO35357.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus
Peru-466]
gi|308091875|gb|EFO41570.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AN-5034]
gi|308112450|gb|EFO49990.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus K5030]
Length = 471
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 100/184 (54%), Gaps = 17/184 (9%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPH---AKPPVSLLGQIYWREFYYVVGSDTPN 153
T+ LSPYL G LS R + ++ A P ++ + L +I WREFY + P
Sbjct: 238 TSQLSPYLAIGALSPR---QCIARLYAENPQPDLSEGKATWLSEIIWREFYQHLLVFEPK 294
Query: 154 FDKMKG-----NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHA 208
K +G +KI W +E+ E W G TGYP +DA MRQL GW+H+ R
Sbjct: 295 LVKGRGFIDWEDKI----QWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMI 350
Query: 209 VACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFG 267
VA FLT+ DL++ W G+ F L+D D+A N G W W +++ Q +FR+++P++ G
Sbjct: 351 VASFLTK-DLHIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQG 409
Query: 268 KKTD 271
+K D
Sbjct: 410 EKFD 413
>gi|448602427|ref|ZP_21656483.1| deoxyribodipyrimidine photolyase [Haloferax sulfurifontis ATCC
BAA-897]
gi|445747942|gb|ELZ99396.1| deoxyribodipyrimidine photolyase [Haloferax sulfurifontis ATCC
BAA-897]
Length = 482
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 113/235 (48%), Gaps = 12/235 (5%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALK-RLEKSLANKEWVRKFEKPNTAPNSLEPSTTV 99
+PT+ ++G +E P TEA + RL A+ + ++ P +T+
Sbjct: 192 LPTISDLGFEE---PTAAVQSAGTEAARERLSAFCADA--IYRYADDRDYPT--RDATSR 244
Query: 100 LSPYLKFGCLSVRLFYHELKKIL--ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
LS LKFG + +R Y G + Q+ WREFY V + PN
Sbjct: 245 LSTDLKFGTIGIREVYAATAAAREGVGGERDESVEEFQSQLAWREFYAHVLREHPNVVTE 304
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ + W + + L AW GKTGYP +DA MRQLR E ++H+ R VA FLT+ D
Sbjct: 305 NYKEYENDIAWRDDSEELAAWKEGKTGYPIVDAGMRQLREETYMHNRVRMIVASFLTK-D 363
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L W G + F E L D D A + G W W +++ Q +FR+++P+ G++ D
Sbjct: 364 LLCDWRHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYD 418
>gi|284173137|ref|ZP_06387106.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2]
gi|384432815|ref|YP_005642173.1| deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2]
gi|261600969|gb|ACX90572.1| Deoxyribodipyrimidine photo-lyase [Sulfolobus solfataricus 98/2]
Length = 431
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 107/205 (52%), Gaps = 24/205 (11%)
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKK 120
GG E LK ++++ R F E + T LSP+LKFG LSVR Y+ L
Sbjct: 184 GGRKEGLKLIDRAKQIDYSRRDF--------VAEDNRTFLSPHLKFGTLSVREVYYSLVD 235
Query: 121 ILATGPHAKPPVSLLGQIYWREFYYVVG--SDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
A ++ Q+YWR+FY ++ ++ ++ ++ C ++W NEK L+AW
Sbjct: 236 NQA----------IIRQLYWRDFYTLLAYYNERVFYEPLRREYSC--IEWGNNEKLLQAW 283
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
HGKTGYP IDA MRQL G + + R A FL + L + W+ G+ F L+D D
Sbjct: 284 VHGKTGYPIIDAGMRQLNQTGDMPNRVRMLTAFFLVKV-LLIDWKIGERYFASKLIDYDP 342
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSP 263
++N GNW W+ AS FRV+ P
Sbjct: 343 SVNNGNWQWI-ASVGTDYIFRVFDP 366
>gi|153835921|ref|ZP_01988588.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ3810]
gi|149750675|gb|EDM61420.1| deoxyribodipyrimidine photo-lyase [Vibrio parahaemolyticus AQ3810]
Length = 471
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 100/184 (54%), Gaps = 17/184 (9%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPH---AKPPVSLLGQIYWREFYYVVGSDTPN 153
T+ LSPYL G LS R + ++ A P ++ + L +I WREFY + P
Sbjct: 238 TSQLSPYLAIGALSPR---QCIARLYAENPQPDLSEGKATWLSEIIWREFYQHLLVFEPK 294
Query: 154 FDKMKG-----NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHA 208
K +G +KI W +E+ E W G TGYP +DA MRQL GW+H+ R
Sbjct: 295 LVKGRGFIDWEDKI----QWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMI 350
Query: 209 VACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFG 267
VA FLT+ DL++ W G+ F L+D D+A N G W W +++ Q +FR+++P++ G
Sbjct: 351 VASFLTK-DLHIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQG 409
Query: 268 KKTD 271
+K D
Sbjct: 410 EKFD 413
>gi|425464194|ref|ZP_18843516.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9809]
gi|389833855|emb|CCI21283.1| Deoxyribodipyrimidine photo-lyase [Microcystis aeruginosa PCC 9809]
Length = 474
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 12/235 (5%)
Query: 41 VPTMKEMGLD-ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTV 99
+PT++ +G ++ +PL GE A RLE+ + +++ P T+
Sbjct: 187 LPTLENLGFTWQNPLPLAP---GEKAAHSRLEEFCQGV--INNYQEDRNFPAF--DGTSR 239
Query: 100 LSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFDK 156
LS LKFG + +R + ++L + S++ ++ WREFY P
Sbjct: 240 LSAALKFGAIGIRTIWTATLELLENCCAQEAKDSIITWQQELAWREFYQHCLYFFPELAV 299
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K W NE++ +AW GKTGYP +DA MRQL GW+H+ R VA FLT+
Sbjct: 300 GAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTK- 358
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DL ++W++G+ F + L D D A N G W W ++S + R+++P + +K D
Sbjct: 359 DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQTQKFD 413
>gi|284800868|ref|YP_003412733.1| hypothetical protein LM5578_0616 [Listeria monocytogenes 08-5578]
gi|284994054|ref|YP_003415822.1| hypothetical protein LM5923_0615 [Listeria monocytogenes 08-5923]
gi|284056430|gb|ADB67371.1| hypothetical protein LM5578_0616 [Listeria monocytogenes 08-5578]
gi|284059521|gb|ADB70460.1| hypothetical protein LM5923_0615 [Listeria monocytogenes 08-5923]
Length = 467
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 11/235 (4%)
Query: 38 EHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPST 97
E L P +E E + L GE A RL + K + ++K P T
Sbjct: 171 ESLFPKYEEQ-FAEMTCDLPILDSGERAANTRLANFI--KHDIADYDKARDFPEL--DKT 225
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
+ LS YL+ G +SVR + L++ AT A ++ WR+FY ++ PN
Sbjct: 226 SHLSRYLRTGEISVRTIWQALQENEATEGRA----IFEKELCWRDFYNMIYVSFPNQKNE 281
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ ++W+ N ++ +AW GKTG+P +DA MRQL+ GW+H+ R A FLT+ D
Sbjct: 282 PIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTK-D 340
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTD 271
L + W G+ F+++L+D D A N G W W +++ +FR+++P +K D
Sbjct: 341 LLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFD 395
>gi|320585730|gb|EFW98409.1| deoxyribodipyrimidine photo-lyase [Grosmannia clavigera kw1407]
Length = 584
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/271 (31%), Positives = 127/271 (46%), Gaps = 18/271 (6%)
Query: 9 VLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKF-PGGETEAL 67
+L + PK T P E P P K +G + C P GE EA+
Sbjct: 258 ILGPIDNPKTQAKTKTRWPAELMDCPIPS---APKGKTLGTKAEAKRFCTLWPAGEHEAM 314
Query: 68 KRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK-----KIL 122
+RLE E V + P ++E +T+ LSPYL G LS R + K L
Sbjct: 315 RRLEHFC--DERVADYSDERDFP-AVE-ATSSLSPYLAAGVLSARTVIRTARDRTGAKTL 370
Query: 123 ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKIC-CQVDWDTNEKYLEAWSHG 181
G + ++ WR+FY + P+ K K+ + W N + AW+ G
Sbjct: 371 DDGTEGF--RVWISEVSWRDFYRHILVAWPHVCFNKPFKLAYSGIAWSYNHDHFTAWTEG 428
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
+TGYP +DA MRQL +GW+H+ R VA FL + DL L W G+ F E L+D D+A N
Sbjct: 429 RTGYPIVDAAMRQLNKQGWLHNRCRMIVASFLAK-DLLLDWRLGERYFMEHLVDGDFASN 487
Query: 242 AGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+G W + ++ Q +FR+++P+ ++ D
Sbjct: 488 SGGWGFSASVGVDPQPYFRIFNPILQSERFD 518
>gi|433660514|ref|YP_007301373.1| Deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus BB22OP]
gi|432511901|gb|AGB12718.1| Deoxyribodipyrimidine photolyase [Vibrio parahaemolyticus BB22OP]
Length = 471
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 100/184 (54%), Gaps = 17/184 (9%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPH---AKPPVSLLGQIYWREFYYVVGSDTPN 153
T+ LSPYL G LS R + ++ A P ++ + L +I WREFY + P
Sbjct: 238 TSQLSPYLAIGALSPR---QCIARLYAENPQPDLSEGKATWLSEIIWREFYQHLLVFEPK 294
Query: 154 FDKMKG-----NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHA 208
K +G +KI W +E+ E W G TGYP +DA MRQL GW+H+ R
Sbjct: 295 LVKGRGFIDWEDKI----QWSYDEQAFECWKTGTTGYPIVDAAMRQLNQTGWMHNRLRMI 350
Query: 209 VACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFG 267
VA FLT+ DL++ W G+ F L+D D+A N G W W +++ Q +FR+++P++ G
Sbjct: 351 VASFLTK-DLHIDWRWGEEYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQG 409
Query: 268 KKTD 271
+K D
Sbjct: 410 EKFD 413
>gi|330448252|ref|ZP_08311900.1| deoxyribodipyrimidine photolyase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328492443|dbj|GAA06397.1| deoxyribodipyrimidine photolyase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 489
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 108/220 (49%), Gaps = 16/220 (7%)
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
P E L+RL+ K + + + P T+ LSP+L G LS R ++L
Sbjct: 214 PVDEEAILQRLDTFCVTK--AQDYHQQRDFPAI--DGTSCLSPFLAIGALSARQCVYQL- 268
Query: 120 KILATGPHA------KPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQ-VDWDTNE 172
L PHA + L +I WREFY + P K + Q V W N
Sbjct: 269 --LQHFPHALEVNKEDGAFTWLNEIIWREFYGHLLHRYPELSKNHPFQDYTQYVRWQDNP 326
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
L+AW GKTG+P +DA MRQLR GW+H+ R A FLT+ DL W G+ F +
Sbjct: 327 ILLKAWQDGKTGFPIVDAAMRQLRATGWMHNRLRMITASFLTK-DLLCDWRAGEQWFMQH 385
Query: 233 LLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L+D D+A N G W W +++ Q +FR+++P G++ D
Sbjct: 386 LIDGDFASNNGGWQWAASTGTDSQPYFRIFNPTLQGQRFD 425
>gi|448601043|ref|ZP_21656326.1| deoxyribodipyrimidine photolyase [Haloferax alexandrinus JCM 10717]
gi|445734646|gb|ELZ86204.1| deoxyribodipyrimidine photolyase [Haloferax alexandrinus JCM 10717]
Length = 484
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 114/234 (48%), Gaps = 10/234 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+PT+ ++G +E S + G A +RL A+ + ++ P +T+ L
Sbjct: 194 LPTISDLGFEEPSASVQS--AGTEAARERLSAFCADA--IYRYADDRDYPT--RDATSRL 247
Query: 101 SPYLKFGCLSVRLFYHELKKIL--ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMK 158
S LKFG + +R Y G + Q+ WREFY V + PN
Sbjct: 248 STDLKFGTIGIREVYAATAAAREGVGGERDESVEEFQSQLAWREFYAHVLREHPNVVTEN 307
Query: 159 GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
+ + W +++ L AW G+TGYP +DA MRQLR E ++H+ R VA FLT+ DL
Sbjct: 308 YKEYEEDIAWRDDDEELAAWKAGETGYPIVDAGMRQLREEAYMHNRVRMIVASFLTK-DL 366
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
W G + F E L D D A + G W W +++ Q +FR+++P+ G++ D
Sbjct: 367 LCDWRHGYAHFREHLADHDTANDNGGWQWAASTGTDAQPYFRIFNPMTQGERYD 420
>gi|440759874|ref|ZP_20938998.1| Deoxyribodipyrimidine photolyase [Pantoea agglomerans 299R]
gi|436426413|gb|ELP24126.1| Deoxyribodipyrimidine photolyase [Pantoea agglomerans 299R]
Length = 474
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 111/219 (50%), Gaps = 13/219 (5%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FP GE ALKRL + A K + + P +T+ LS YL G LS R H
Sbjct: 203 FPAGEAAALKRL-RHFATKPVI---DYPAKRDLPALDATSRLSVYLATGVLSPRQCLH-- 256
Query: 119 KKILATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKY 174
++L P A + L ++ WREFY + P + + V+W N+ +
Sbjct: 257 -RVLHEHPDALDNSRAFTWLNELIWREFYRHLLVAYPALCRHQPFIDWTRNVEWQRNDAH 315
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
+AW G+TGYP +DA MRQ++ GW+H+ R A FL + DL + W EG+ F + L+
Sbjct: 316 FDAWKAGRTGYPIVDAAMRQMKALGWMHNRLRMITASFLVK-DLLIDWREGERYFMQQLI 374
Query: 235 DADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
D D A N G W W +++ +FR+++P G++ D+
Sbjct: 375 DGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDE 413
>gi|166363455|ref|YP_001655728.1| DNA photolyase [Microcystis aeruginosa NIES-843]
gi|166085828|dbj|BAG00536.1| DNA photolyase [Microcystis aeruginosa NIES-843]
Length = 474
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 117/235 (49%), Gaps = 12/235 (5%)
Query: 41 VPTMKEMGLD-ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTV 99
+PT++ +G ++ +PL GE A RLE+ + +++ P T+
Sbjct: 187 LPTLENLGFTWQNPLPLTP---GEKAAHSRLEEFCQGV--INNYQEDRNFPAF--DGTSR 239
Query: 100 LSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFDK 156
LS LKFG + +R + ++L + S++ ++ WREFY P
Sbjct: 240 LSAALKFGAIGIRTIWTATLELLENCCAQEAKDSIITWQQELAWREFYQHCLYFFPELAV 299
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
K W NE++ +AW GKTGYP +DA MRQL GW+H+ R VA FLT+
Sbjct: 300 GAYRKEFRHFPWQDNEEHFQAWCQGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFLTK- 358
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DL ++W++G+ F + L D D A N G W W ++S + R+++P + +K D
Sbjct: 359 DLIINWQKGEKYFMQKLFDGDLAANNGGWQWSASSGMDPKPLRIFNPASQTQKFD 413
>gi|304395693|ref|ZP_07377576.1| Deoxyribodipyrimidine photo-lyase [Pantoea sp. aB]
gi|304356987|gb|EFM21351.1| Deoxyribodipyrimidine photo-lyase [Pantoea sp. aB]
Length = 474
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 111/219 (50%), Gaps = 13/219 (5%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FP GE ALKRL + A K + + P +T+ LS YL G LS R H
Sbjct: 203 FPAGEAAALKRL-RHFATKPVI---DYPAKRDLPALDATSRLSVYLATGVLSPRQCLH-- 256
Query: 119 KKILATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKY 174
++L P A + L ++ WREFY + P + + V+W N+ +
Sbjct: 257 -RVLHEHPDALDNSRAFTWLNELIWREFYRHLLVAYPALCRHQPFIDWTRNVEWQRNDAH 315
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
+AW G+TGYP +DA MRQ++ GW+H+ R A FL + DL + W EG+ F + L+
Sbjct: 316 FDAWKAGRTGYPIVDAAMRQMKALGWMHNRLRMITASFLVK-DLLIDWREGERYFMQQLI 374
Query: 235 DADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
D D A N G W W +++ +FR+++P G++ D+
Sbjct: 375 DGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDE 413
>gi|406908204|gb|EKD48781.1| hypothetical protein ACD_64C00134G0005 [uncultured bacterium]
Length = 465
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 116/216 (53%), Gaps = 13/216 (6%)
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
K GG + +L L K L +K+ E+ A ++ TT LS KFG +S+R YH
Sbjct: 204 IKVHGGRSNSLTIL-KMLKSKQAAYNKERNYPALDA----TTHLSASHKFGTISIRESYH 258
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
+KK L G H++ LL ++YWR+F+ + P ++ + W + +
Sbjct: 259 AIKKAL--GAHSQ----LLKELYWRDFFTYIAYHNPFVFGQPYHEKYKTLWWSKSNTDFK 312
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
W G TG+P +DA MRQ+ GW+H+ R VA FLT+ DL+++W G+ F + L+D
Sbjct: 313 KWCEGTTGFPIVDAGMRQMNTTGWMHNRVRMIVASFLTK-DLHINWLWGEKYFAQQLVDY 371
Query: 237 DWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
D A+N GNW W +++ Q +FR+++P KK D
Sbjct: 372 DPAVNNGNWQWAASTGCDAQPYFRIFNPWTQQKKFD 407
>gi|397774714|ref|YP_006542260.1| DNA photolyase FAD-binding protein [Natrinema sp. J7-2]
gi|397683807|gb|AFO58184.1| DNA photolyase FAD-binding protein [Natrinema sp. J7-2]
Length = 469
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 112/235 (47%), Gaps = 11/235 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+P++ E+G D+ P P T A + + +E E T+ L
Sbjct: 176 IPSLDEVGFDD---PEATPPTVTTAAARERVADFCSGP---IYEYAALRDYPAESGTSRL 229
Query: 101 SPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLL---GQIYWREFYYVVGSDTPNFDKM 157
SP+LK+G + R Y ++ S+ Q+ WREFY V + PN
Sbjct: 230 SPHLKWGTIGPRELYAATERAAERAASDGDRESVREFQRQLAWREFYAHVLAFNPNTVTE 289
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ ++DW + LEAW G TGYP +DA MRQLR +GW+H+ R VA FLT+ D
Sbjct: 290 DFSGYDNEIDWHDDPDALEAWKAGTTGYPIVDAGMRQLRADGWMHNRVRMLVASFLTK-D 348
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L W G + F E L D D A + G W W ++ Q +FRV++P+ G++ D
Sbjct: 349 LLTDWRAGYAWFREKLADHDTANDVGGWQWAGSTGTDAQPYFRVFNPMKQGREYD 403
>gi|393215739|gb|EJD01230.1| hypothetical protein FOMMEDRAFT_169392 [Fomitiporia mediterranea
MF3/22]
Length = 1055
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 97/182 (53%), Gaps = 7/182 (3%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG----QIYWREFYYVVGSDT 151
+T+ LSPYL G +S R K L + +G +I WR+FY V
Sbjct: 395 TTSRLSPYLASGVISARACIRATMKFLNCKNIEANRGNGVGMWVQEIAWRDFYNHVMVAF 454
Query: 152 PNFDKMKGN-KICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVA 210
P + + V W+TNE++L+AW GKTG P +DA MRQL GW+H+ R VA
Sbjct: 455 PRVSMGRSYLEKYADVKWETNEEHLQAWKDGKTGVPIVDAGMRQLNEFGWMHNRCRMIVA 514
Query: 211 CFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKK 269
+LT+ DL L W G+ F E L+D D A N G W W +++ Q +FR+++PV+ +K
Sbjct: 515 MYLTK-DLMLDWRLGEKYFMENLIDGDLASNNGGWQWSASTGTDPQPYFRIFNPVSQSEK 573
Query: 270 TD 271
D
Sbjct: 574 AD 575
>gi|126658357|ref|ZP_01729506.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
gi|126620289|gb|EAZ91009.1| deoxyribopyrimidine photolyase [Cyanothece sp. CCY0110]
Length = 476
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 122/240 (50%), Gaps = 22/240 (9%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+PT K++G + PL PG ET A ++L N + +++ P +T+ L
Sbjct: 191 LPTAKDLGYSWDA-PLLLEPG-ETAAKEQLNYFSDNA--IYSYQEQRNLPAI--DATSKL 244
Query: 101 SPYLKFGCLSVRLFYHELKKILAT--GPHAKPPVSLLGQ-IYWREFY------YVVGSDT 151
SP KFG + +R + + A+ + Q I WREFY + ++
Sbjct: 245 SPAFKFGIIGIREVWQATVEAYENTRSDEARENIQTWQQEIAWREFYQHCLYFFPELAEG 304
Query: 152 PNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVAC 211
P D+ K + WD NE++ +AW GKTGYP +DA MRQL GW+H+ R VA
Sbjct: 305 PYRDEFK------EFPWDNNEQHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVAS 358
Query: 212 FLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
FLT+ DL ++W+ G+ F + L+D D + N G W W ++S + R+++P + +K D
Sbjct: 359 FLTK-DLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKPLRIFNPASQAQKYD 417
>gi|312796611|ref|YP_004029533.1| Deoxyribodipyrimidine photolyase [Burkholderia rhizoxinica HKI 454]
gi|312168386|emb|CBW75389.1| Deoxyribodipyrimidine photolyase (EC 4.1.99.3) [Burkholderia
rhizoxinica HKI 454]
Length = 522
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 110/221 (49%), Gaps = 16/221 (7%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GE +L+ LAN + ++ P +T+ LSPYL+FG LS R +H
Sbjct: 231 GEQAGQTQLDAFLANA--LTRYASGRDVPAMQ--ATSRLSPYLRFGNLSARQVWHAALSA 286
Query: 122 LATGPH---------AKPPVS-LLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
G H A V L ++ WREF Y + ++ + + W +
Sbjct: 287 ARVGRHCGDARRTCTASSGVDKFLDELGWREFSYYLLYHCAPLHQVNFKRQFDTMPWRAD 346
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
L AW HG+TGYP +DA MR+L GW+H+ R A FL + L ++W EG++ F +
Sbjct: 347 TADLRAWQHGRTGYPLVDAGMRELWHTGWMHNRVRMVTASFLVK-HLLINWREGEAWFWD 405
Query: 232 LLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
L+DAD A N NW W++ S A +FR+++PV G+K D
Sbjct: 406 TLVDADEASNPANWQWVAGSGADAAPYFRIFNPVLQGQKFD 446
>gi|312883049|ref|ZP_07742780.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369209|gb|EFP96730.1| deoxyribodipyrimidine photolyase [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 476
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 108/202 (53%), Gaps = 14/202 (6%)
Query: 80 VRKFEKPNT---APNSLEPS---TTVLSPYLKFGCLSVRLFYHELKKILATG--PHAKPP 131
+R+FE+ A N PS T++LSPYL G LS+R + +++ P +
Sbjct: 216 LREFEEKKVKLYAENRDYPSVDATSILSPYLAVGILSIR---QCMARVMYQQQLPLSGGR 272
Query: 132 VSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDA 190
++ WREFY + P K + N + W+ ++ +LEAW GKTGYP +DA
Sbjct: 273 EVWQSELIWREFYQHLAYFEPKLSKGESFNPWGEHLRWENSQVFLEAWKSGKTGYPIVDA 332
Query: 191 IMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSA 250
M+QL GW+H+ R VA FL + DL++ W G+ F L+D D+ N G W W S+
Sbjct: 333 AMKQLNETGWMHNRLRMIVASFLIK-DLHIDWRVGEQYFMSKLVDGDYPANNGGWQWCSS 391
Query: 251 SAFFHQ-FFRVYSPVAFGKKTD 271
+ Q +FR+++P+ G++ D
Sbjct: 392 TGCDGQPYFRIFNPITQGERFD 413
>gi|120598121|ref|YP_962695.1| deoxyribodipyrimidine photo-lyase [Shewanella sp. W3-18-1]
gi|120558214|gb|ABM24141.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. W3-18-1]
Length = 493
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 125/247 (50%), Gaps = 15/247 (6%)
Query: 32 GILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPN 91
G+ P ++P K + L + + ++ GE +A KRL ++ V+ +++ P
Sbjct: 184 GVPAPLGPVLPEPKALNLAVNKVSSEQWGAGEGQA-KRLLCDFVQQK-VQDYKQDRDFP- 240
Query: 92 SLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG-----QIYWREFYYV 146
+L+ T+ +SPYL G LS R + +L P + LG ++ WREFY
Sbjct: 241 ALD-GTSCISPYLAIGVLSAR---QCVAALLQRFPEVIVDDTSLGRTWLNELVWREFYRH 296
Query: 147 VGSDTPNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLA 205
+ P+ K N+ QV W N + +AW G+TGYP +DA MRQL GW+H+
Sbjct: 297 LLVAFPDLSKNYNFNRQADQVQWRNNIEEFKAWCEGRTGYPIVDAAMRQLNQTGWMHNRL 356
Query: 206 RHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPV 264
R VA FLT+ L + W G+ F + L+D D A N G W W + Q +FR+++P+
Sbjct: 357 RMVVASFLTK-HLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPM 415
Query: 265 AFGKKTD 271
+ +K D
Sbjct: 416 SQSEKFD 422
>gi|448343517|ref|ZP_21532441.1| deoxyribodipyrimidine photolyase [Natrinema gari JCM 14663]
gi|445622861|gb|ELY76302.1| deoxyribodipyrimidine photolyase [Natrinema gari JCM 14663]
Length = 469
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 112/235 (47%), Gaps = 11/235 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+P++ E+G D+ P P T A + + +E E T+ L
Sbjct: 176 IPSLDEVGFDD---PEATPPTVTTAAARERVADFCSGP---IYEYAALRDYPAESGTSRL 229
Query: 101 SPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLL---GQIYWREFYYVVGSDTPNFDKM 157
SP+LK+G + R Y ++ S+ Q+ WREFY V + PN
Sbjct: 230 SPHLKWGTIGPRELYAATERAAERAASDGDRESVREFQRQLAWREFYAHVLAFNPNTVTE 289
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ ++DW + LEAW G TGYP +DA MRQLR +GW+H+ R VA FLT+ D
Sbjct: 290 DFSGYDNEIDWHDDPDALEAWKAGTTGYPIVDAGMRQLRADGWMHNRVRMLVASFLTK-D 348
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L W G + F E L D D A + G W W ++ Q +FRV++P+ G++ D
Sbjct: 349 LLTDWRAGYAWFREKLADHDTANDVGGWQWAGSTGTDAQPYFRVFNPMKQGREYD 403
>gi|429335278|ref|ZP_19215915.1| deoxyribodipyrimidine photolyase [Pseudomonas putida CSV86]
gi|428760080|gb|EKX82357.1| deoxyribodipyrimidine photolyase [Pseudomonas putida CSV86]
Length = 428
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 135/283 (47%), Gaps = 38/283 (13%)
Query: 3 YQKLVSVLESLPKPKPADDAPTS----LPRECQGILHPDEHLVPTMKEMGLDESSIPLCK 58
YQ+L L L + D P + +P +G P T++++
Sbjct: 110 YQRLHHALPPLQRLPRKQDRPAATNDAIPEAIEGFALP----CDTLRDL----------- 154
Query: 59 FPGGETEALKRLEK--SLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVR---- 112
+P GE A KRLE A ++ + + P+ T+ LSPYL G +SVR
Sbjct: 155 WPAGERHARKRLEDFAQDAMADYPEQRDIPSV------DGTSQLSPYLAAGVVSVRQCLH 208
Query: 113 -LFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQ-VDWDT 170
H + + P A V+ + ++ WREFY V + P + + + + V W
Sbjct: 209 AALAHNHGEFESGNPGA---VTWINELLWREFYKHVLTGYPRVSRHRAFRPATEAVQWRD 265
Query: 171 NEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFE 230
+ L+AW G+TG P +DA MRQL GW+H+ R VA FL++ +L + W +G++ F
Sbjct: 266 APEDLKAWQEGRTGVPIVDAAMRQLLATGWMHNRLRMVVAMFLSK-NLLIDWRKGEAFFM 324
Query: 231 ELLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTDK 272
L+D D A N G W W +++ +FRV++PV+ ++ DK
Sbjct: 325 RHLIDGDLAANNGGWQWSASTGTDSVPYFRVFNPVSQSERFDK 367
>gi|330502050|ref|YP_004378919.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
NK-01]
gi|328916336|gb|AEB57167.1| deoxyribodipyrimidine photo-lyase type I [Pseudomonas mendocina
NK-01]
Length = 478
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 131/281 (46%), Gaps = 32/281 (11%)
Query: 1 MTYQKLVSVLESL---PKPK-PADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPL 56
+ Y++L S L +L PK + P D +P +G P E L
Sbjct: 156 VCYERLHSALPALVTQPKAQTPMDVKSDIIPDSVKGFATPSESL---------------R 200
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+P GE AL+RLE+ + K E+ A +P T+ LS YL G LS R H
Sbjct: 201 LLWPAGEQAALQRLERFADEQVAFYKDERDFPA----KPGTSQLSAYLAAGILSPRQCLH 256
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQ-VDWDTN 171
+ +G ++ + ++ WREFY + P + + + + V W
Sbjct: 257 AALSANRGEFDSGNQGV--ITWINELLWREFYKHILVGYPRVSRHRAFRPETEAVPWRNA 314
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ L AW G+TG P IDA MRQL GW+H+ R VA FLT+ +L + W EG+ F
Sbjct: 315 PEELAAWQEGRTGLPIIDAAMRQLLETGWMHNRLRMIVAMFLTK-NLLIDWREGERFFMR 373
Query: 232 LLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
L+D D A N G W W +++ +FR+++P++ +K D
Sbjct: 374 HLIDGDLAANNGGWQWSASTGTDAAPYFRIFNPISQSQKFD 414
>gi|116251748|ref|YP_767586.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
viciae 3841]
gi|115256396|emb|CAK07478.1| putative deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum
bv. viciae 3841]
Length = 483
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 95/179 (53%), Gaps = 3/179 (1%)
Query: 94 EPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPN 153
P+T++LSP+L G +S + + + P A V +I WREF Y + P
Sbjct: 239 RPATSMLSPHLALGEISPARIWDATRGLSQRVPAADI-VHFRKEIAWREFSYHLLFHFPR 297
Query: 154 FDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
N ++W + EAW G TGYP +DA MRQL GW+H+ R VA FL
Sbjct: 298 LASANWNDRFDGLEWCNDSDDFEAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFL 357
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
+ DL + W G++ F + L+DAD A NA +W W++ S A FFR+++PV G+K D
Sbjct: 358 IK-DLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGEKFD 415
>gi|238786314|ref|ZP_04630253.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970]
gi|238712773|gb|EEQ04846.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970]
Length = 481
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 112/231 (48%), Gaps = 35/231 (15%)
Query: 59 FPGGETEALKRLEKSLANK--EWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
FP GE AL+RL + +++++ ++P A T+ LSPYL G +S R ++
Sbjct: 204 FPAGEEAALQRLRSFCREQVQDYLQQRDRPAIA------GTSCLSPYLALGIVSPRQCFN 257
Query: 117 ELK----KILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQ------- 165
L+ +L + L ++ WREFY + P CQ
Sbjct: 258 RLRAECPDLLERSDSGA--FTWLNELIWREFYRHLLVAYPRL---------CQHHPFIGW 306
Query: 166 ---VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSW 222
V W+ +E+ L AW G+TGYP +DA MRQL GW+H+ R A FL + DL + W
Sbjct: 307 TDAVRWNHSEQQLIAWQQGQTGYPIVDAAMRQLNETGWMHNRLRMISASFLVK-DLLIDW 365
Query: 223 EEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
G+ F LLD D A N G W W +++ +FR+++P G++ DK
Sbjct: 366 RHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDK 416
>gi|432928263|ref|XP_004081133.1| PREDICTED: cryptochrome DASH-like [Oryzias latipes]
Length = 521
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 127/255 (49%), Gaps = 20/255 (7%)
Query: 2 TYQKLVSVLESLPKPKPADDAP---TSLPRECQGILHPDEHLVPTMKEMGLDE-SSIPLC 57
Y + +ES + +P P SLP +G +PT +++ E + P
Sbjct: 158 VYTEFRKAVESKSRVRPVFPTPDRLNSLPPGLEG------GAIPTAEDLEQTEPETDPRS 211
Query: 58 KFP--GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY 115
FP GGE++AL RL+ + + V +++ ++ ST SP+L GC+S R Y
Sbjct: 212 AFPCSGGESQALARLKHYFWDTDAVATYKETRNGLIGVDYSTK-FSPWLAMGCISPRYIY 270
Query: 116 HELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPN---FDKMKGNKICCQVDWDTNE 172
H++KK + ++ ++ WR+++ VG N F K +K + W +
Sbjct: 271 HQIKKYEQERTANQSTYWVIFELLWRDYFKFVGVKYGNKMFFIKGLQDK---SLPWKRDT 327
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
K +AW G+TG PF+DA MR+L + G++ + R VA FLT+ DL L W G FE L
Sbjct: 328 KLFDAWKEGRTGVPFVDANMRELAMTGFMSNRGRQNVASFLTK-DLGLDWRMGAEWFEYL 386
Query: 233 LLDADWAMNAGNWMW 247
L+D D N GNW++
Sbjct: 387 LIDHDVCSNYGNWLY 401
>gi|410671657|ref|YP_006924028.1| deoxyribodipyrimidine photo-lyase type I [Methanolobus
psychrophilus R15]
gi|409170785|gb|AFV24660.1| deoxyribodipyrimidine photo-lyase type I [Methanolobus
psychrophilus R15]
Length = 459
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 18/227 (7%)
Query: 42 PTMKEMGLDESSIPLCK----FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPST 97
P ++E E +PL GG T+AL+ LE + + + + P SL+ T
Sbjct: 182 PGIEETPASEKLLPLKNEKLFSRGGRTQALQVLEDLSRFENYAAEHDYP-----SLQ-GT 235
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
T LS + K G +S+R FYH ++ L L+ Q+YWR+F+ + P+
Sbjct: 236 TGLSAHNKLGTISIREFYHYVRNELGEDH------PLIRQLYWRDFFTHIAHHFPSVFGQ 289
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ + W N + AW G TG+P +DA MRQL G++H+ R VA FL + D
Sbjct: 290 SFKEKFRNIQWGYNNSFFHAWCSGSTGFPIVDAGMRQLNATGFMHNRVRMIVASFLVK-D 348
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSP 263
L++ W G+ F L+D D +N GNW W +++ Q +FR+++P
Sbjct: 349 LHIDWYLGERYFASKLVDYDPCVNNGNWQWSASTGADSQPYFRIFNP 395
>gi|188534445|ref|YP_001908242.1| deoxyribodipyrimidine photolyase [Erwinia tasmaniensis Et1/99]
gi|188029487|emb|CAO97364.1| Deoxyribodipyrimidine photo-lyase [Erwinia tasmaniensis Et1/99]
Length = 477
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 104/216 (48%), Gaps = 7/216 (3%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FP GE A+ RL + ++ V + P S T+ LS YL G LS R H L
Sbjct: 205 FPSGEKAAIARLREFC--QQAVTDYPDKRDLPAS--DGTSRLSVYLATGVLSPRQCLHRL 260
Query: 119 KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYLEA 177
K + L ++ WREFY + P + + + V W ++L A
Sbjct: 261 LKQHSGALEDARVFVWLNELIWREFYRHLLVAFPALCRHQPFTRWTRNVKWREAPQHLTA 320
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W GKTGYP +DA MRQL GW+H+ R A FL + DL + W EG+ F LLD D
Sbjct: 321 WQQGKTGYPIVDAAMRQLNSLGWMHNRLRMITASFLVK-DLLVDWREGERYFMSQLLDGD 379
Query: 238 WAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
A N G W W +++ +FR+++P G++ DK
Sbjct: 380 LAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDK 415
>gi|445499214|ref|ZP_21466069.1| FAD-bining deoxyribodipyrimidine photolyase PhrB [Janthinobacterium
sp. HH01]
gi|444789209|gb|ELX10757.1| FAD-bining deoxyribodipyrimidine photolyase PhrB [Janthinobacterium
sp. HH01]
Length = 490
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 112/233 (48%), Gaps = 10/233 (4%)
Query: 43 TMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSP 102
T+ E+G + S++ K P G + A + E L + ++ P PS LS
Sbjct: 204 TLAELGFEPSNLAELKIPTGMSGAAQLFEDFLPR---IAGYKDARDYPAVKGPS--YLSL 258
Query: 103 YLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKI 162
+ +FG LSVR + + A G + L ++ WREFY ++ P+
Sbjct: 259 HFRFGTLSVRHLVRTVLDLTARGAGGEGAPVWLAELIWREFYAMILYHNPHVVGGAYKPA 318
Query: 163 CCQVDWDTN---EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLY 219
+ W+T ++ AW G+TGYP +DA M QL G++H+ R ACFL + DL
Sbjct: 319 YDAIQWETGPEADELYAAWCEGRTGYPLVDAAMAQLNQTGYMHNRLRMVTACFLIK-DLG 377
Query: 220 LSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+ W G++ F L D D A N G W W S+S Q +FR+++PV +K D
Sbjct: 378 IDWRRGEAYFALHLNDFDLASNNGGWQWASSSGCDAQPYFRIFNPVTQSEKFD 430
>gi|257082516|ref|ZP_05576877.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis E1Sol]
gi|256990546|gb|EEU77848.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis E1Sol]
Length = 477
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 10/225 (4%)
Query: 48 GLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFG 107
G + IPL + GE A + L + K +R +E P + T+ LS +L+ G
Sbjct: 185 GEQIARIPLKHYSVGEKTARRCLNTFINQK--LRSYENKRDFP--YQDQTSHLSTFLRTG 240
Query: 108 CLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVD 167
LS+R + EL A+ P + + ++ WR+FY ++ S P + + +
Sbjct: 241 ELSIRTIWQEL----ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQ 296
Query: 168 WDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQS 227
W + + W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+
Sbjct: 297 WTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEK 355
Query: 228 VFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
F+++L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 356 YFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 400
>gi|434400657|ref|YP_007134661.1| Deoxyribodipyrimidine photo-lyase [Stanieria cyanosphaera PCC 7437]
gi|428271754|gb|AFZ37695.1| Deoxyribodipyrimidine photo-lyase [Stanieria cyanosphaera PCC 7437]
Length = 475
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 120/237 (50%), Gaps = 16/237 (6%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+PT K++G + PL PG ET A +RL + + + ++++ P T+ L
Sbjct: 191 LPTAKDLGYIWDN-PLILAPG-ETAAKERLVEFCSRA--INEYDEQRNYPAV--DGTSQL 244
Query: 101 SPYLKFGCLSVRLFY------HELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
S LKFG + +R + HE + T + + S ++ WREFY P
Sbjct: 245 SAALKFGAIGIRTVWEASTEAHENCRSDETRDNIR---SWQQELAWREFYQHCMYFFPEL 301
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
++ + W+ NE Y +AW GKTGYP +DA MRQL GW+H+ R VA FLT
Sbjct: 302 EQGAYRREFKDFPWENNEDYFQAWCEGKTGYPIVDAAMRQLNEIGWMHNRCRMIVASFLT 361
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+ DL ++W+ G+ F + L D D + N G W W ++S + R+++P + +K D
Sbjct: 362 K-DLIINWQWGEKYFMQKLFDGDLSANNGGWQWSASSGMDPKPLRIFNPASQAQKYD 417
>gi|448341701|ref|ZP_21530658.1| DNA photolyase FAD-binding protein [Natrinema gari JCM 14663]
gi|445627115|gb|ELY80441.1| DNA photolyase FAD-binding protein [Natrinema gari JCM 14663]
Length = 463
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 91/178 (51%), Gaps = 3/178 (1%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKIL--ATGPHAKPPVSLLGQIYWREFYYVVGSDTPN 153
+ + LSP L G + +R + + I G + ++ WRE YY + + TP+
Sbjct: 220 AVSRLSPSLAAGAIGIREVWATVTDIRDGVDGDERRNVDKYAFELTWREQYYHLLAHTPD 279
Query: 154 FDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
+ ++ W +E AW G+TGYP +DA MRQL EG+IH+ R VA FL
Sbjct: 280 LATENYKQFPNEITWRNDEADFRAWKRGETGYPLVDAGMRQLEREGYIHNRPRQVVASFL 339
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
T+ L L W G + F E L+D D A+N GNW W++++ R++ PVA K D
Sbjct: 340 TKH-LLLDWRRGATHFRERLVDHDPAVNPGNWQWIASTGTDSVDVRIFDPVAQAAKYD 396
>gi|422412010|ref|ZP_16488969.1| deoxyribodipyrimidine photo-lyase, partial [Listeria innocua FSL
S4-378]
gi|313620250|gb|EFR91701.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL S4-378]
Length = 302
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 124/238 (52%), Gaps = 17/238 (7%)
Query: 38 EHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPST 97
E L P +E E L F GE A RL + KE + ++K P +L+ T
Sbjct: 6 ESLFPNYEEQ-FRELIQDLPAFDSGEKAANTRLANFV--KEDLADYDKARDVP-ALD-KT 60
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
+ LS YL+ G +S+R + L+K AT A + ++ WR+FY ++ +F K
Sbjct: 61 SHLSRYLRTGEISIRTVWQALQKEEATEGRA----TFEKELCWRDFYNMI---YVSFPKQ 113
Query: 158 KGNKICCQ---VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
K I ++W+ N ++ + W G+TG+P +DA MRQL+ GW+H+ R A FLT
Sbjct: 114 KNEPIQENYRFIEWENNREFFKKWQDGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLT 173
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTD 271
+ DL + W G+ F+++L+D D A N G W W +++ +FR+++P +K D
Sbjct: 174 K-DLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFD 230
>gi|134095905|ref|YP_001100980.1| deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans]
gi|133739808|emb|CAL62859.1| Deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans]
Length = 493
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 119/236 (50%), Gaps = 10/236 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+P++ ++G +++++P P G A L+ A + ++++++ P PS L
Sbjct: 193 IPSLTDLGFEKTNLPDLNIPTGMQGAQDLLD---AFADRMQRYDQTRDFPALKGPS--YL 247
Query: 101 SPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGN 160
S +++FG +S+R + TG L ++ WR+FY+++ P+
Sbjct: 248 SVHVRFGTVSIRALARRALDAMRTGTGGNGAAVWLSELVWRDFYFMILFQHPHVVDHAFK 307
Query: 161 KICCQVDWDTNE---KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ W++ + + +AW G+TGYP +DA M QL G++H+ R A FL + D
Sbjct: 308 ADYDAITWESGDHARRLFQAWCDGQTGYPLVDAAMAQLNQTGYMHNRLRMVTASFLIK-D 366
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDK 272
L + W G+ F E L D D A N G W W S+S Q +FR+++P+ +K D+
Sbjct: 367 LGIDWRWGEHYFAEKLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPITQSEKFDQ 422
>gi|424035065|ref|ZP_17774394.1| deoxyribodipyrimidine photo-lyase, partial [Vibrio cholerae
HENC-02]
gi|408899448|gb|EKM33733.1| deoxyribodipyrimidine photo-lyase, partial [Vibrio cholerae
HENC-02]
Length = 470
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 99/180 (55%), Gaps = 9/180 (5%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPH---AKPPVSLLGQIYWREFYYVVGSDTPN 153
T+ LSPYL G LS R + ++ A P + + L +I WREFY + P
Sbjct: 238 TSQLSPYLAIGALSPR---QCIARLYAESPMVDLSDGKATWLSEIIWREFYQHLLVFEPK 294
Query: 154 FDKMKGNKIC-CQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
K +G ++ W +E+ E W G TGYP +DA MRQL GW+H+ R VA F
Sbjct: 295 LVKGRGFIAWEDKIQWSYDEQAFERWKAGNTGYPIVDAAMRQLNTTGWMHNRLRMIVASF 354
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
LT+ DL++ W G++ F L+D D+A N G W W +++ Q +FR+++P++ G+K D
Sbjct: 355 LTK-DLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFD 413
>gi|229545787|ref|ZP_04434512.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX1322]
gi|256619098|ref|ZP_05475944.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 4200]
gi|256853160|ref|ZP_05558530.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T8]
gi|307274924|ref|ZP_07556087.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2134]
gi|307291962|ref|ZP_07571831.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0411]
gi|421512360|ref|ZP_15959167.1| Deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29212]
gi|422685955|ref|ZP_16744168.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4000]
gi|422718954|ref|ZP_16775605.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0017]
gi|229309099|gb|EEN75086.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis TX1322]
gi|256598625|gb|EEU17801.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 4200]
gi|256711619|gb|EEU26657.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis T8]
gi|306496960|gb|EFM66508.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0411]
gi|306508372|gb|EFM77479.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX2134]
gi|315029350|gb|EFT41282.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4000]
gi|315034003|gb|EFT45935.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0017]
gi|401674473|gb|EJS80824.1| Deoxyribodipyrimidine photolyase [Enterococcus faecalis ATCC 29212]
Length = 477
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 10/225 (4%)
Query: 48 GLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFG 107
G + IPL + GE A + L + K ++ +E P + T+ LS +L+ G
Sbjct: 185 GEQIARIPLTHYSVGEKTARRCLNTFIDQK--LQSYENKRDFP--YQDQTSHLSTFLRTG 240
Query: 108 CLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVD 167
LS+R + EL A+ P + + ++ WR+FY ++ S P + + +
Sbjct: 241 ELSIRTIWQEL----ASAPSSLSKETFKKELAWRDFYNMIYSTFPQQKEEVIQEKFRYIQ 296
Query: 168 WDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQS 227
W + + W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+
Sbjct: 297 WTNDPEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEK 355
Query: 228 VFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
F+++L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 356 YFQKMLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 400
>gi|424059066|ref|ZP_17796557.1| hypothetical protein W9K_00180 [Acinetobacter baumannii Ab33333]
gi|404669804|gb|EKB37696.1| hypothetical protein W9K_00180 [Acinetobacter baumannii Ab33333]
Length = 480
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 121/240 (50%), Gaps = 18/240 (7%)
Query: 45 KEMGLDESSIPLCKF---------PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP 95
+ + LDE C F P GE AL++L++ + +E V ++ PN
Sbjct: 190 ENIDLDEIEKLFCSFLSKEQQDLWPVGEQYALEQLDQFI--EESVCHYKVERDFPNI--Q 245
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPH--AKPPVSLLGQIYWREFYYVVGSDTPN 153
T+ LSPYL G LS+R L + H + + L ++ WREFY + D P+
Sbjct: 246 GTSKLSPYLNIGILSIRQCLQALFRNQHGNFHLVNEGQQTWLDELLWREFYQHILFDFPH 305
Query: 154 FDK-MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
K + K ++ W+ N ++L AW G+TG P +DA MRQL GW+H+ R A F
Sbjct: 306 VSKHIPFKKDSQKIKWNHNPEHLTAWQMGQTGIPIVDAGMRQLLQTGWMHNRVRMITAMF 365
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L + +L + W G+ F + L+D D A N G W W +++ +FR+++P+A KK D
Sbjct: 366 LCK-NLLIDWRIGEQWFMQHLIDGDLAANNGGWQWCASTGTDAVPYFRIFNPIAQSKKFD 424
>gi|114046742|ref|YP_737292.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-7]
gi|113888184|gb|ABI42235.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-7]
Length = 493
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 93/183 (50%), Gaps = 11/183 (6%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHA-----KPPVSLLGQIYWREFYYVVGSD 150
T+V+SPYL G LS R + +L P P + L ++ WREFY +
Sbjct: 247 GTSVISPYLALGVLSPR---QCIAALLGRFPEVIVDDTSPGRTWLNELIWREFYRHLLVA 303
Query: 151 TPNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAV 209
P+ K N+ V W N+ AW GKTGYP +DA MRQL GW+H+ R V
Sbjct: 304 FPDLSKGHNFNRQADHVQWRNNQAEFLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMVV 363
Query: 210 ACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGK 268
A FLT+ L + W G+ F + L+D D A N G W W + Q +FR+++P++ +
Sbjct: 364 ASFLTK-HLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSE 422
Query: 269 KTD 271
K D
Sbjct: 423 KFD 425
>gi|443324015|ref|ZP_21052973.1| cryptochrome, DASH family [Xenococcus sp. PCC 7305]
gi|442796190|gb|ELS05502.1| cryptochrome, DASH family [Xenococcus sp. PCC 7305]
Length = 491
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 120/232 (51%), Gaps = 7/232 (3%)
Query: 36 PDEHL--VPTMKEMGLDE---SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAP 90
PD +L +P + ++GL+ S + F GGET AL RL+ + + ++++ ++K
Sbjct: 182 PDINLGELPQLSDLGLEAPKFDSRAVLDFKGGETAALARLDSYIWSGDYLKDYKKTRNGM 241
Query: 91 NSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSD 150
+ S+ SP+L GCLS RL Y ++++ A L+ ++ WR+F+Y +G+
Sbjct: 242 LGADYSSK-FSPWLALGCLSPRLIYEQVQEYEAQRVKNDSTYWLIFELLWRDFFYFIGTK 300
Query: 151 TPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVA 210
+ + + W + + W GKTG+P +DA MR+L G++ + R VA
Sbjct: 301 HGDRIFRQSGLQGITISWKEDWTRFKLWQEGKTGFPLVDANMRELATTGFMSNRGRQNVA 360
Query: 211 CFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYS 262
FLT+ +L ++W+ G FE L+D D N GNW + + + FR ++
Sbjct: 361 SFLTK-NLGINWQMGAEWFESCLIDYDVCSNWGNWNYTAGVGNDARGFRYFN 411
>gi|424032472|ref|ZP_17771889.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HENC-01]
gi|408875530|gb|EKM14674.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HENC-01]
Length = 471
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 99/180 (55%), Gaps = 9/180 (5%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPH---AKPPVSLLGQIYWREFYYVVGSDTPN 153
T+ LSPYL G LS R + ++ A P + + L +I WREFY + P
Sbjct: 238 TSQLSPYLAIGALSPR---QCIARLYAESPMVDLSDGKATWLSEIIWREFYQHLLVFEPK 294
Query: 154 FDKMKGNKIC-CQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
K +G ++ W +E+ E W G TGYP +DA MRQL GW+H+ R VA F
Sbjct: 295 LVKGRGFIAWEDKIQWSYDEQAFERWKAGNTGYPIVDAAMRQLNTTGWMHNRLRMIVASF 354
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
LT+ DL++ W G++ F L+D D+A N G W W +++ Q +FR+++P++ G+K D
Sbjct: 355 LTK-DLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFD 413
>gi|354598518|ref|ZP_09016535.1| DNA photolyase FAD-binding [Brenneria sp. EniD312]
gi|353676453|gb|EHD22486.1| DNA photolyase FAD-binding [Brenneria sp. EniD312]
Length = 489
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 108/217 (49%), Gaps = 9/217 (4%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FP GET AL +L + +E V+ + + P T+ LSPYL G LS R ++ L
Sbjct: 202 FPVGETAALHQLRRFC--REQVQDYPRQRDLPAL--AGTSKLSPYLALGVLSPRQCFNRL 257
Query: 119 KKILATGPHAKP--PVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYL 175
+ + S ++ WREFY+ + P+ + K +V W + +L
Sbjct: 258 RAECPAMLERRESGAFSWFNELVWREFYHHLLVFWPDLCRHKPFTDWTRRVQWRQSPDFL 317
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
AW GKTGYP +DA MRQL GW+H+ R A FL + DL + W +G+ F LLD
Sbjct: 318 AAWQQGKTGYPIVDAAMRQLNQTGWMHNRLRMICASFLVK-DLLIDWRQGERYFMSQLLD 376
Query: 236 ADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
A N G W W +++ +FR+++P G++ D
Sbjct: 377 GSLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFD 413
>gi|332160904|ref|YP_004297481.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386309317|ref|YP_006005373.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
palearctica Y11]
gi|418242332|ref|ZP_12868845.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|433550393|ref|ZP_20506437.1| Deoxyribodipyrimidine photolyase [Yersinia enterocolitica IP 10393]
gi|318604809|emb|CBY26307.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325665134|gb|ADZ41778.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862934|emb|CBX73069.1| deoxyribodipyrimidine photo-lyase [Yersinia enterocolitica W22703]
gi|351778261|gb|EHB20426.1| deoxyribodipyrimidine photolyase [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|431789528|emb|CCO69477.1| Deoxyribodipyrimidine photolyase [Yersinia enterocolitica IP 10393]
Length = 481
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 111/229 (48%), Gaps = 31/229 (13%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FP GE AL+RL + +E V+ +++ P T+ LSPYL G LS R + L
Sbjct: 204 FPAGEEAALQRLRRFC--REDVQDYQQQRDFPAVA--GTSCLSPYLALGILSPRQCVNRL 259
Query: 119 K----KILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQ--------- 165
+ ++L L ++ WREFY + P CQ
Sbjct: 260 RAECPEVLENADGGA--FIWLNELIWREFYRHLLVAYPRL---------CQHHPFIGWTD 308
Query: 166 -VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEE 224
V W+ +E+ L AW G+TGYP +DA MRQL GW+H+ R A FL + DL + W +
Sbjct: 309 AVIWNHSEQQLIAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVK-DLLIDWRQ 367
Query: 225 GQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
G+ F LLD D A N G W W +++ +FR+++P G++ D+
Sbjct: 368 GERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDQ 416
>gi|229151347|ref|ZP_04279551.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550]
gi|228632137|gb|EEK88762.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550]
Length = 476
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 97/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+PYL F +SV+L +H L K S + Q+ WREF Y + P
Sbjct: 232 SMLAPYLSFSQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|451335740|ref|ZP_21906305.1| Deoxyribodipyrimidine photolyase [Amycolatopsis azurea DSM 43854]
gi|449421632|gb|EMD27039.1| Deoxyribodipyrimidine photolyase [Amycolatopsis azurea DSM 43854]
Length = 442
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 115/231 (49%), Gaps = 20/231 (8%)
Query: 42 PTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLS 101
P++K M L E GE AL R + L + +++ P+ P TT LS
Sbjct: 177 PSLKGMELPEP---------GEKAALDRWHEFLDGD--LETYDEDRDRPD--RPGTTRLS 223
Query: 102 PYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNK 161
PYL++GC+ R +L +G SL G+ WREF+ V P + +
Sbjct: 224 PYLRWGCVHPRTLLADLAGNEGSGAK-----SLRGEFAWREFHADVLWHRPETARKNYDS 278
Query: 162 ICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLS 221
++ +++++ + W G+TG+P +DA MRQL EGW+H+ R VA FL + DL+L
Sbjct: 279 RFDAMEHESDDEAFKRWCEGRTGFPIVDAGMRQLLAEGWMHNRVRMIVASFLVK-DLHLP 337
Query: 222 WEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
W G F L+D D A N NW W++ S +FR+++P G+K D
Sbjct: 338 WWLGARYFMNHLVDGDLASNQLNWQWVAGSGTDAAPYFRIFNPTTQGEKFD 388
>gi|254283655|ref|ZP_04958623.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
gi|219679858|gb|EED36207.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
Length = 477
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 111/216 (51%), Gaps = 13/216 (6%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GE A +RL+ LA V+ + P E T+ LSP+LKFG +S R +H +
Sbjct: 204 GEEGATRRLDDFLAGT--VKHYGDGRDIP--AEAYTSRLSPHLKFGEISPRQIWHAAQYA 259
Query: 122 LATGPHAKPPVS-LLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVD---WDTNEKYLEA 177
P A + L +I WREF Y + F +M Q D W +K L+A
Sbjct: 260 KQRLPEAAESIDKFLSEIGWREFCYTL---LDQFPEMPNKPFKAQFDHFPWAGTQKALKA 316
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W G TGYP +DA MR+L G++H+ R FLT+ L W G+ F + L+DAD
Sbjct: 317 WQKGLTGYPIVDAGMRELWQTGFMHNRVRMITGSFLTK-HLLTHWRAGELWFWDCLVDAD 375
Query: 238 WAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
A NA +W W++ S A +FR+++P+A G+K DK
Sbjct: 376 IASNACSWQWVAGSGADASPYFRIFNPIAQGEKFDK 411
>gi|329894045|ref|ZP_08270030.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC3088]
gi|328923217|gb|EGG30537.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC3088]
Length = 467
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 125/265 (47%), Gaps = 25/265 (9%)
Query: 15 KPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSL 74
+ PA P PR C + P L+ + K+ +D+ +P GE A+ RL
Sbjct: 163 RADPAPIYPAPEPRRCSAAV-PGSELLASDKQ-AMDQF------WPAGEDAAMNRLAHFC 214
Query: 75 ANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHA--KPPV 132
++ + ++ P EP T+ LSPYL G +S R+ + H + P
Sbjct: 215 EDR--IDHYKAKRDLP--AEPGTSELSPYLAAGVISPRVCLDAAIRANRGDIHEGRQGPD 270
Query: 133 SLLGQIYWREFYYVVGSDTPNFD-----KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPF 187
+ + ++ WR+FY + P +++G KI W + AW G+TGYP
Sbjct: 271 TWISELIWRDFYIHILDTYPRVSMNRCFRVEGEKI----PWRNAPEDFAAWCEGRTGYPI 326
Query: 188 IDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMW 247
+DA MRQL GW+H+ R VA FLT+ L + W EG+ F + L+D D N G W W
Sbjct: 327 VDAAMRQLVQTGWMHNRLRMLVAMFLTK-QLLIDWREGERFFMQHLIDGDLGANNGGWQW 385
Query: 248 LSASAF-FHQFFRVYSPVAFGKKTD 271
+++ +FR+++P+ +K D
Sbjct: 386 AASTGTDAAPYFRIFNPITQSQKFD 410
>gi|113969509|ref|YP_733302.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-4]
gi|113884193|gb|ABI38245.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. MR-4]
Length = 493
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 93/183 (50%), Gaps = 11/183 (6%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHA-----KPPVSLLGQIYWREFYYVVGSD 150
T+V+SPYL G LS R + +L P P + L ++ WREFY +
Sbjct: 247 GTSVISPYLALGVLSPR---QCIAALLGRFPEVIVDDTSPGRTWLNELIWREFYRHLLVA 303
Query: 151 TPNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAV 209
P+ K N+ V W N+ AW GKTGYP +DA MRQL GW+H+ R V
Sbjct: 304 FPDLSKGHNFNRQADHVQWRNNQAEFLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMVV 363
Query: 210 ACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGK 268
A FLT+ L + W G+ F + L+D D A N G W W + Q +FR+++P++ +
Sbjct: 364 ASFLTK-HLLIDWRWGERYFRQHLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSE 422
Query: 269 KTD 271
K D
Sbjct: 423 KFD 425
>gi|238790472|ref|ZP_04634241.1| Deoxyribodipyrimidine photo-lyase [Yersinia frederiksenii ATCC
33641]
gi|238721416|gb|EEQ13087.1| Deoxyribodipyrimidine photo-lyase [Yersinia frederiksenii ATCC
33641]
Length = 481
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 111/229 (48%), Gaps = 31/229 (13%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FP GE AL+RL +E V+ +++ P +T+ LSPYL G LS R + L
Sbjct: 204 FPAGEEAALQRLRTFC--REQVQDYQQQRDFPAI--AATSCLSPYLALGILSPRQCVNRL 259
Query: 119 K----KILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQ--------- 165
+ ++L L ++ WREFY + P CQ
Sbjct: 260 RAECPEVLENADGGA--FIWLNELIWREFYRHLLVAYPRL---------CQHRPFIGWTD 308
Query: 166 -VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEE 224
V W+ +++ L AW G+TGYP +DA MRQL GW+H+ R A FL + DL + W +
Sbjct: 309 AVVWNHSQQQLIAWQQGQTGYPIVDAAMRQLNETGWMHNRLRMISASFLVK-DLLIDWRQ 367
Query: 225 GQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
G+ F LLD D A N G W W +++ +FR+++P G++ DK
Sbjct: 368 GERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDK 416
>gi|365538417|ref|ZP_09363592.1| deoxyribodipyrimidine photolyase [Vibrio ordalii ATCC 33509]
Length = 470
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 99/181 (54%), Gaps = 9/181 (4%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPH---AKPPVSLLGQIYWREFYYVVGSDTP 152
ST+ LSPYL G LS R + ++ A H ++ + L +I WREFY + P
Sbjct: 235 STSALSPYLATGALSAR---QCMARLYAESQHIGLSEGAQTWLSEIIWREFYQHLIGFRP 291
Query: 153 NFDKMKGNKICCQ-VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVAC 211
+ K K + V W N E W G+TG+P +DA MRQL GW+H+ R VA
Sbjct: 292 DLCKGKDFAPWGKYVSWWENSTAFERWQQGQTGFPIVDAAMRQLNKTGWMHNRLRMVVAS 351
Query: 212 FLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKT 270
FLT+ DL++ W G+ F + L+D D+A N G W W +++ Q +FR+++P + G++
Sbjct: 352 FLTK-DLHIDWRLGEQYFMQTLVDGDYASNNGGWQWCASTGCDGQPYFRIFNPTSQGERF 410
Query: 271 D 271
D
Sbjct: 411 D 411
>gi|114797406|ref|YP_760502.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
neptunium ATCC 15444]
gi|114737580|gb|ABI75705.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
neptunium ATCC 15444]
Length = 485
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 109/213 (51%), Gaps = 6/213 (2%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK-K 120
GE A KRL+ L V + P + T+ LSP+L+FG + + ++ +
Sbjct: 207 GEVGAQKRLDAFLDGP--VSDYVGTRNLPG-VSTGTSRLSPHLRFGEIGPAQIWRAVRAR 263
Query: 121 ILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSH 180
+ A L +I WREF Y + P N Q+ W ++ AWS
Sbjct: 264 LEAQQADEDSARVFLSEIAWREFSYTLLYYNPALATENYNSNFNQMAWRKDDSGFAAWSR 323
Query: 181 GKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAM 240
G+TGYP +DA MR+L GW+H+ R VA FLT+ L L W++G+ F + L+DAD A
Sbjct: 324 GQTGYPIVDAGMRELWHTGWMHNRVRMIVASFLTK-HLLLPWQQGEQWFWDTLVDADPAA 382
Query: 241 NAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
N +W W + S A +FRV++P++ G+K D+
Sbjct: 383 NPASWQWTAGSGADAAPYFRVFNPISQGQKFDE 415
>gi|343515133|ref|ZP_08752192.1| deoxyribodipyrimidine photolyase [Vibrio sp. N418]
gi|342798665|gb|EGU34263.1| deoxyribodipyrimidine photolyase [Vibrio sp. N418]
Length = 483
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 130/270 (48%), Gaps = 42/270 (15%)
Query: 38 EHLVPTMKEMGLDESSIPLCKFPGGETEALKRL--------------EKSLANKEWVRKF 83
E+L P +K + + S + + E+ L E+ + N + +R+
Sbjct: 160 ENLPPVVKTTAVRDDSTNILDIKAEQKESYPALLSTQSVFSYPRESSERYVVNSKAIRQL 219
Query: 84 ------EKPNTAPNSLEP----STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVS 133
E+ + N + +T++LSPYL G LSVR + ++L + +
Sbjct: 220 LCEFCHERVDNYHNDRDKPALNATSMLSPYLAIGALSVR---QCVARVLYSAQAHQITSP 276
Query: 134 LLGQ--------IYWREFYYVVGSDTPNFDKMKGNKICC---QVDWDTNEKYLEAWSHGK 182
LLG+ + WR+FY + P KG ++ W ++++L AW G
Sbjct: 277 LLGEGIHTWISELVWRDFYQHLLHFEPKL--CKGRHFVTWTEKMHWPGSKQHLAAWQKGM 334
Query: 183 TGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNA 242
TGYP +DA MRQL GW+H+ R VA FLT+ DL++ W G+ F + L+D D+A N
Sbjct: 335 TGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTK-DLHVHWHHGERYFMQKLVDGDYAANN 393
Query: 243 GNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
G W W +++ Q +FR+++P A G++ D
Sbjct: 394 GGWQWSASTGCDAQPYFRIFNPTAQGERFD 423
>gi|379009825|ref|YP_005267638.1| FAD-binding deoxyribodipyrimidine photolyase [Wigglesworthia
glossinidia endosymbiont of Glossina morsitans morsitans
(Yale colony)]
gi|375158349|gb|AFA41415.1| FAD-binding deoxyribodipyrimidine photolyase [Wigglesworthia
glossinidia endosymbiont of Glossina morsitans morsitans
(Yale colony)]
Length = 477
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 27/228 (11%)
Query: 59 FPGGETEALKRLEK----SLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLF 114
F GE ALK+L+K L N R F N ST+ LSPYL G LS
Sbjct: 203 FLPGENYALKKLKKFVDTKLNNYHINRDFFSIN--------STSQLSPYLTVGALSASRC 254
Query: 115 YHELKKILATGPHAKPP--VSLLGQIYWREFYYVVGSDTPNFDKMK------GNKICCQV 166
+ +KK + K P ++ WREFY + P F M NKIC
Sbjct: 255 LYLIKKNSKNFTNEKNPGLFKWYSELIWREFYQHLMIAYP-FLSMSEPFLKWTNKIC--- 310
Query: 167 DWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQ 226
W+ N KY++AW +G TGYP IDA M QL+ GW+H+ R A FL + +L++ W G+
Sbjct: 311 -WENNPKYIKAWKNGSTGYPIIDASMHQLKQTGWLHNRLRMISASFLVK-NLFVDWRIGE 368
Query: 227 SVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDKF 273
F L+D + + N G W W +++ +FR+++P+ GKK D +
Sbjct: 369 KYFISHLIDGNLSSNNGGWQWSASTGTDSAPYFRIFNPILQGKKFDHY 416
>gi|238752103|ref|ZP_04613586.1| Deoxyribodipyrimidine photo-lyase [Yersinia rohdei ATCC 43380]
gi|238709680|gb|EEQ01915.1| Deoxyribodipyrimidine photo-lyase [Yersinia rohdei ATCC 43380]
Length = 480
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 112/229 (48%), Gaps = 15/229 (6%)
Query: 51 ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLS 110
+ S+ FP GE AL RL +E V+ +++ P T+ LSPYL G LS
Sbjct: 195 QQSVDNQLFPAGEEAALLRLRTFC--REQVQDYQQQRDLPAV--AGTSCLSPYLALGILS 250
Query: 111 VRLFYHELKKILATGPHAKPPVS-----LLGQIYWREFYYVVGSDTPNFDKMKG-NKICC 164
R + L+ A P L ++ WREFY + P + +
Sbjct: 251 PRQCVNRLR---AECPEVFEKADGGAFIWLNELIWREFYRHLLVAYPRLCQHRPFIDWTD 307
Query: 165 QVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEE 224
V W+ +E++L AW G+TGYP +DA MRQL GW+H+ R A FL + DL ++W
Sbjct: 308 AVVWNHSEQHLLAWQQGRTGYPIVDAAMRQLNETGWMHNRLRMISASFLVK-DLLINWRH 366
Query: 225 GQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
G+ F LLD D A N G W W +++ +FR+++P G++ DK
Sbjct: 367 GERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDK 415
>gi|254428910|ref|ZP_05042617.1| deoxyribodipyrimidine photolyase family [Alcanivorax sp. DG881]
gi|196195079|gb|EDX90038.1| deoxyribodipyrimidine photolyase family [Alcanivorax sp. DG881]
Length = 501
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 108/218 (49%), Gaps = 19/218 (8%)
Query: 62 GETEALKRL----EKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHE 117
GE A ++L E++LA R F P+ A T+ LS L G LSV Y
Sbjct: 214 GEEAAWQQLDQFVEQALAGYRRQRDF--PDIA------GTSGLSAALSAGALSVASCYRA 265
Query: 118 LKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVD---WDTNEKY 174
+ +A +G++ WR+FY + + P + G + D WD +++
Sbjct: 266 ASQAMADAGSRDGATCWIGELAWRDFYRQIMAQFPRVSR--GQAFRPETDLLQWDQDDER 323
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
AW G+TGYP +DA MRQL GW+H+ R A FL++ L+L W G++ F L+
Sbjct: 324 FAAWCEGRTGYPLVDAAMRQLVATGWMHNRLRMVTAMFLSK-HLWLDWRRGEAFFMAHLM 382
Query: 235 DADWAMNAGNWMW-LSASAFFHQFFRVYSPVAFGKKTD 271
D D+A N G W W SA +FRV++PV G++ D
Sbjct: 383 DGDFAANNGGWQWSASAGTDAVPYFRVFNPVRQGQRFD 420
>gi|24374895|ref|NP_718938.1| deoxyribodipyrimidine photolyase PhrB [Shewanella oneidensis MR-1]
gi|24349596|gb|AAN56382.1| deoxyribodipyrimidine photolyase PhrB [Shewanella oneidensis MR-1]
Length = 512
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 109/220 (49%), Gaps = 13/220 (5%)
Query: 58 KFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHE 117
++ GE +A + L + + K V+ +++ P T+V+SPYL G LS R
Sbjct: 232 QWAAGEGQAKRLLNQFIQQK--VQDYKQDRDFPAI--DGTSVISPYLAIGVLSPRQCVAA 287
Query: 118 LKKIL--ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVD---WDTNE 172
L + P + L ++ WREFY + P D KGN Q D W N+
Sbjct: 288 LLQRFPEVIVDDTSPGRTWLNELIWREFYRHLLVAFP--DLSKGNNFNRQADHVLWRNNQ 345
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
AW GKTGYP +DA MRQL GW+H+ R VA FLT+ L + W G+ F +
Sbjct: 346 SEFLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTK-HLLIDWRWGERYFRQH 404
Query: 233 LLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L+D D A N G W W + Q +FR+++P++ +K D
Sbjct: 405 LIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKFD 444
>gi|315501047|ref|YP_004079934.1| deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5]
gi|315407666|gb|ADU05783.1| Deoxyribodipyrimidine photo-lyase [Micromonospora sp. L5]
Length = 440
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 122/254 (48%), Gaps = 27/254 (10%)
Query: 28 RECQGILHPDEHLVPTMKEM--GLDESSIP---LCKFP----GGETEALKRLEKSLANKE 78
R QG+ DE P + G+D +P P GGE A +RL
Sbjct: 152 RAWQGVRWRDELAAPKRVRLPDGVDPGRLPDPPKGDSPDAAVGGEAVARRRL------TA 205
Query: 79 WVRKFEKPNTAPNSLE-PSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQ 137
W+ ++ + + + T+ LSPYL+FGC+S L G P + Q
Sbjct: 206 WLPTLDRYDDIHDDMAGDETSRLSPYLRFGCVS------PLAVATRAGGWDGP---FVRQ 256
Query: 138 IYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRL 197
+ WR+FY+ V + P+ + + + DW + +AW+ G+TG P +DA MRQLR
Sbjct: 257 LCWRDFYHQVVAGFPDLSTVAYRR-GAREDWRDDPHAFDAWAEGRTGMPIVDAGMRQLRA 315
Query: 198 EGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQF 257
EGW+H+ AR A +LT+ L L W G +F LLD D N+GNW W++ + +
Sbjct: 316 EGWMHNRARLITAGYLTK-HLGLDWRPGLEIFFRWLLDGDRVNNSGNWQWVAGTGNDTRP 374
Query: 258 FRVYSPVAFGKKTD 271
+R ++PV ++ D
Sbjct: 375 YRGFNPVRQAERYD 388
>gi|117919615|ref|YP_868807.1| deoxyribodipyrimidine photo-lyase type I [Shewanella sp. ANA-3]
gi|117611947|gb|ABK47401.1| Deoxyribodipyrimidine photo-lyase type I [Shewanella sp. ANA-3]
Length = 493
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 110/218 (50%), Gaps = 15/218 (6%)
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKK 120
GE +A + L + K V+ +++ P +L+ T+V+SPYL G LS R +
Sbjct: 216 AGEGQAKRILTAFIKQK--VQDYKQDRDFP-ALD-GTSVISPYLALGVLSPR---QCIAA 268
Query: 121 ILATGPHA-----KPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKY 174
+L P P + L ++ WREFY + P+ K N+ V W N+
Sbjct: 269 LLGRFPDVIVDDTSPGRTWLNELIWREFYRHLLVAFPDLSKGHNFNRQADHVQWRNNQAE 328
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
AW GKTGYP +DA MRQL GW+H+ R VA FLT+ L + W G+ F + L+
Sbjct: 329 FLAWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMVVASFLTK-HLLIDWRWGERYFRQHLI 387
Query: 235 DADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
D D A N G W W + Q +FR+++P++ +K D
Sbjct: 388 DGDLAANNGGWQWSAGCGCDAQPYFRIFNPISQSEKFD 425
>gi|422415100|ref|ZP_16492057.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL J1-023]
gi|313624820|gb|EFR94752.1| deoxyribodipyrimidine photo-lyase [Listeria innocua FSL J1-023]
Length = 467
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 123/238 (51%), Gaps = 17/238 (7%)
Query: 38 EHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPST 97
E L P +E E L F GE A RL + KE + ++K P +L+ T
Sbjct: 171 ESLFPKYEEQ-FRELIQDLPAFDSGEKAANTRLANFV--KEDLASYDKARDVP-ALD-KT 225
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
+ LS YL+ G +S+R + L+K AT A + ++ WR+FY ++ P K
Sbjct: 226 SHLSRYLRTGEISIRTVWQALQKEEATEGRA----TFEKELCWRDFYNMIYVSFP---KQ 278
Query: 158 KGNKICCQ---VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
K I ++W+ N ++ + W G+TG+P +DA MRQL+ GW+H+ R A FLT
Sbjct: 279 KNEPIQENYRFIEWENNREFFKKWQEGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLT 338
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTD 271
+ DL + W G+ F+++L+D D A N G W W +++ +FR+++P +K D
Sbjct: 339 K-DLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFD 395
>gi|432849009|ref|ZP_20080379.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE144]
gi|431401751|gb|ELG85085.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE144]
Length = 472
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 114/227 (50%), Gaps = 13/227 (5%)
Query: 51 ESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLS 110
S FP E A+ +L + N ++E+ P ++E T+ LS L G LS
Sbjct: 193 RQSFDTAHFPVEEKAAIAQLRQFCQNG--AGEYEQQRDFP-AVE-GTSRLSASLATGGLS 248
Query: 111 VRLFYHELKKILATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKI-CCQV 166
R H ++LA P A L ++ WREFY + + P+ K + + +V
Sbjct: 249 PRQCLH---RLLAEQPQALDGGAGSVWLNELIWREFYRHLITYYPSLCKHRPFIVWTDRV 305
Query: 167 DWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQ 226
W +N +L+AW GKTGYP +DA MRQL GW+H+ R A FL + DL + W EG+
Sbjct: 306 QWQSNSAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK-DLLIDWREGE 364
Query: 227 SVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
F L+D D A N G W W +++ +FR+++P G+K D+
Sbjct: 365 RYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDR 411
>gi|423099697|ref|ZP_17087404.1| putative deoxyribodipyrimidine photo-lyase [Listeria innocua ATCC
33091]
gi|370793782|gb|EHN61607.1| putative deoxyribodipyrimidine photo-lyase [Listeria innocua ATCC
33091]
Length = 467
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 123/238 (51%), Gaps = 17/238 (7%)
Query: 38 EHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPST 97
E L P +E E L F GE A RL + KE + ++K P +L+ T
Sbjct: 171 ESLFPNYEEQ-FRELIQDLPAFDSGEKAANTRLANFV--KEDLADYDKARDVP-ALD-KT 225
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
+ LS YL+ G +S+R + L+K AT A + ++ WR+FY ++ P K
Sbjct: 226 SHLSRYLRTGEISIRTVWQALQKEEATEGRA----TFEKELCWRDFYNMIYVSFP---KQ 278
Query: 158 KGNKICCQ---VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
K I ++W+ N ++ + W G+TG+P +DA MRQL+ GW+H+ R A FLT
Sbjct: 279 KNEPIQENYRFIEWENNREFFKKWQDGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLT 338
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTD 271
+ DL + W G+ F+++L+D D A N G W W +++ +FR+++P +K D
Sbjct: 339 K-DLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFD 395
>gi|130157|sp|P12768.1|PHR_STRGR RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|47083|emb|CAA33161.1| unnamed protein product [Streptomyces griseus]
Length = 455
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 94/176 (53%), Gaps = 8/176 (4%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+T+ LSP+L FG +S H ++ G A + Q+ WR+F++ V +D P D
Sbjct: 230 ATSRLSPHLHFGTVSAAELVHRAREKGGLGGEA-----FVRQLAWRDFHHQVLADRP--D 282
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
+ W ++ + AW G TGYP +DA MRQL EGW+H+ AR A FLT+
Sbjct: 283 ASWSDYRPRHDRWRSDADEMHAWKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASFLTK 342
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LY+ W EG F +LL+D D A N NW W++ + + RV +PV GK+ D
Sbjct: 343 -TLYVDWREGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRPNRVLNPVIQGKRFD 397
>gi|209364020|ref|YP_002268317.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
5J108-111]
gi|207081953|gb|ACI23155.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
5J108-111]
Length = 452
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 93/178 (52%), Gaps = 3/178 (1%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSL-LGQIYWREFYYVVGSDTPNF 154
ST+ LSPYL FG +S+R + + + + + + L Q+ WREF Y + P
Sbjct: 228 STSHLSPYLHFGEISIRQVWTAITQATIQDKNLQKAADVFLRQLIWREFAYYLLWHFPQM 287
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
K W N+ +L AW G TGYP +DA MR+L G++H+ AR VA FL
Sbjct: 288 GKSNFRNQFDNFKWKKNKNWLRAWQKGLTGYPIVDAGMRELWCTGYMHNRARMIVASFLV 347
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
+ DL + W EG+ F LLDAD A NA W W++ +FR+++P+ KK D
Sbjct: 348 K-DLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGLDAAPYFRIFNPILQSKKFD 404
>gi|67921140|ref|ZP_00514659.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
gi|67857257|gb|EAM52497.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 8501]
Length = 518
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRL----EKSLANKEWVRKFEKPNTAPNSLEPS 96
+PT K++G + PL PG ET A ++L + + N + R + N
Sbjct: 233 LPTAKDLGYSWDA-PLILEPG-ETAAKEQLNYFCDSLIYNYQEQRNYPGIN--------G 282
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILAT--GPHAKPPVSLLGQ-IYWREFYYVVGSDTPN 153
T+ LSP KFG + +R + A+ + Q I WREFY P
Sbjct: 283 TSTLSPAFKFGVIGIREVWQATLSAYENTYSDEARENIQTWQQEIAWREFYQHCMYFFPE 342
Query: 154 FDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
+ WD NE++ +AW GKTGYP +DA MRQL GW+H+ R VA FL
Sbjct: 343 LATGPYRQEFKDFSWDNNEQHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFL 402
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
T+ DL ++W+ G+ F + L+D D + N G W W ++S + R+++P + +K D
Sbjct: 403 TK-DLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKPLRIFNPASQAQKYD 459
>gi|17230217|ref|NP_486765.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
gi|17131818|dbj|BAB74424.1| deoxyribopyrimidine photolyase [Nostoc sp. PCC 7120]
Length = 479
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 129/273 (47%), Gaps = 27/273 (9%)
Query: 12 SLPKPKPADDAPTSLPRECQGILHPDEHL--------VPTMKEMGL--DESSIPLCKFPG 61
S PK KP + + +G+ ++ L +PT K++G D I
Sbjct: 159 SKPKAKPVETL-----QNAEGLTESEQELAQKAGVKTLPTAKDLGFFWDADLI----IAP 209
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GE A +LE+ A + ++++ P T+ LS LKFG + +R + +
Sbjct: 210 GEAAAQAKLEEFTAKA--ITEYQEQRNFPAV--DGTSQLSAALKFGVIGIRTVWQATLEA 265
Query: 122 LATGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
L + ++ ++ WREFY + P + W+TNE++ +AW
Sbjct: 266 LENSRSEEASAAIRTWQQELAWREFYQHAMYNFPELADGAYRETFKNFPWETNEEHFQAW 325
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
GKTGYP +DA MRQ+ GW+H+ R VA FLT+ DL ++ + G+ F + L+D D
Sbjct: 326 REGKTGYPIVDAAMRQMNESGWMHNRCRMIVASFLTK-DLLINPQLGEKYFMQKLIDGDL 384
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+ N G W W ++S + R+++P + +K D
Sbjct: 385 SANNGGWQWSASSGMDPKPLRIFNPASQSQKFD 417
>gi|416411130|ref|ZP_11688696.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
gi|357260360|gb|EHJ09791.1| Deoxyribodipyrimidine photolyase [Crocosphaera watsonii WH 0003]
Length = 518
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 18/238 (7%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRL----EKSLANKEWVRKFEKPNTAPNSLEPS 96
+PT K++G + PL PG ET A ++L + + N + R + N
Sbjct: 233 LPTAKDLGYSWDA-PLILEPG-ETAAKEQLNYFCDSLIYNYQEQRNYPGIN--------G 282
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILAT--GPHAKPPVSLLGQ-IYWREFYYVVGSDTPN 153
T+ LSP KFG + +R + A+ + Q I WREFY P
Sbjct: 283 TSTLSPAFKFGVIGIREVWQATLSAYENTYSDEARENIQTWQQEIAWREFYQHCMYFFPE 342
Query: 154 FDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
+ WD NE++ +AW GKTGYP +DA MRQL GW+H+ R VA FL
Sbjct: 343 LATGPYRQEFKDFSWDNNEQHFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMIVASFL 402
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
T+ DL ++W+ G+ F + L+D D + N G W W ++S + R+++P + +K D
Sbjct: 403 TK-DLIINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKPLRIFNPASQAQKYD 459
>gi|351729025|ref|ZP_08946716.1| deoxyribodipyrimidine photo-lyase [Acidovorax radicis N35]
Length = 496
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 119/243 (48%), Gaps = 16/243 (6%)
Query: 36 PDEH--LVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSL 93
P EH VPT+ +G + +++ K P G + A + + L E ++E P
Sbjct: 194 PQEHRQAVPTLASLGFEATALSQLKLPTGASGAQQLFDDFLGRIE---RYEDTRNFPAVK 250
Query: 94 EPSTTVLSPYLKFGCLSVRLFYHELKKILATG-PHAKPPVSLLGQIYWREFYYVVGSDTP 152
PS LS +L+FG +S RL ++ G P A + L ++ WR+FY+ + P
Sbjct: 251 GPS--YLSVHLRFGTISPRLLARTAHGLMLQGNPGA---TTWLSELIWRDFYFQILHHHP 305
Query: 153 NFDKMKGNKICCQVDWDTN---EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAV 209
+ + W++ + AW G+TGYP +DA M Q+ G++H+ R V
Sbjct: 306 HVVGHSFKPAYDAIQWESGPEADALFAAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVV 365
Query: 210 ACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGK 268
A FL + DL + W G++ F L D D A N G W W S+S Q +FR+++PV+ +
Sbjct: 366 ASFLVK-DLGIDWRWGEAYFATHLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPVSQSE 424
Query: 269 KTD 271
K D
Sbjct: 425 KFD 427
>gi|261251524|ref|ZP_05944098.1| deoxyribodipyrimidine photolyase [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|417952403|ref|ZP_12595462.1| deoxyribodipyrimidine photolyase [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|260938397|gb|EEX94385.1| deoxyribodipyrimidine photolyase [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342819219|gb|EGU54065.1| deoxyribodipyrimidine photolyase [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 475
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 97/184 (52%), Gaps = 18/184 (9%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVS-----LLGQIYWREFYYVVGSDT 151
T+ LSPYL G LSVR L ++L P PP++ L ++ WREFY +
Sbjct: 238 TSQLSPYLAIGALSVR---QCLIRLLCNNP---PPIAGGREVWLSELVWREFYQHLIYFE 291
Query: 152 PNFDKMKGNKICCQVD---WDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHA 208
P K G+ D W N +EAW G+TGYP +DA M QL GW+H+ R
Sbjct: 292 PKLSK--GHSFTSWGDNLVWRNNPAEIEAWKLGRTGYPIVDAAMAQLNRTGWMHNRLRMI 349
Query: 209 VACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFG 267
VA FL + DL++ W G+ F L+D D+A N G W W +++ Q +FRV++P G
Sbjct: 350 VASFLVK-DLHVDWRIGEEYFMSKLIDGDYAANNGGWQWCASTGCDGQPYFRVFNPTTQG 408
Query: 268 KKTD 271
+K D
Sbjct: 409 EKFD 412
>gi|388567569|ref|ZP_10154000.1| deoxyribodipyrimidine photo-lyase [Hydrogenophaga sp. PBC]
gi|388265174|gb|EIK90733.1| deoxyribodipyrimidine photo-lyase [Hydrogenophaga sp. PBC]
Length = 496
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 122/236 (51%), Gaps = 14/236 (5%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
VPT+ E+G + +++ P GE A + + L + + ++++ P PS L
Sbjct: 197 VPTLAEIGFERTNLAQLPLPTGEDGAHQLFDDFL---QRIDRYDEARDYPAIKGPS--YL 251
Query: 101 SPYLKFGCLSVRLFYHELKKILATGPHAKPPVSL-LGQIYWREFYYVVGSDTPNFDKMKG 159
S +L+FG +S+R ++ A G P S L ++ WR+FY+ + S+ P+ +
Sbjct: 252 SAHLRFGTVSIRALASIAHELHAQG---NPGASTWLSELIWRDFYHQILSNFPHVAQSAF 308
Query: 160 NKICCQVDWD---TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
V ++ + +AW G+TGYP +DA M Q+ G++H+ R VA FL +
Sbjct: 309 KPAYDAVRYEHGKAADALFKAWCEGRTGYPLVDAAMAQINQTGYMHNRLRMVVASFLVK- 367
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL + W+ G+ F E L+D D A N G W W S+S Q +FR+++PV ++ D
Sbjct: 368 DLGIHWQWGERYFAEHLIDYDLAANNGGWQWASSSGCDAQPWFRIFNPVTQSERFD 423
>gi|329850702|ref|ZP_08265547.1| deoxyribodipyrimidine photo-lyase [Asticcacaulis biprosthecum C19]
gi|328841017|gb|EGF90588.1| deoxyribodipyrimidine photo-lyase [Asticcacaulis biprosthecum C19]
Length = 280
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 110/218 (50%), Gaps = 10/218 (4%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
F GE A L + LA+ + +E P+ + T+ LSP+L+FG +S R EL
Sbjct: 24 FKPGEAGARGALRRFLASG--LADYEDGRDRPD--KDLTSYLSPHLRFGEISPRRILTEL 79
Query: 119 KKILATGPH-AKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEA 177
K++ + P P ++ WREF Y + P W +++K A
Sbjct: 80 DKVVRSTPRLVAPAEKFRKELVWREFNYNILDLQPELHTRNFRDDFSTFPWQSSDKDFRA 139
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W+ G+TGYP +DA M+QL G++H+ R A FL + L + W G+ F + LLDAD
Sbjct: 140 WARGETGYPLVDAGMKQLWQTGFMHNRVRMVCASFLVK-HLLIDWRRGEQWFWDCLLDAD 198
Query: 238 WAMNAGNWMWLSA-SAFFHQFFRVYSPVAFGKKTDKFE 274
A N GNW W++ A +FRV++P+ + DKF+
Sbjct: 199 PASNPGNWQWVAGCGADAAPYFRVFNPIT---QADKFD 233
>gi|270263757|ref|ZP_06192026.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13]
gi|270042641|gb|EFA15736.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13]
Length = 476
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 107/219 (48%), Gaps = 13/219 (5%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FP GE ALKRL +E V+ + + P T+ LSPYL G LS R ++ L
Sbjct: 202 FPAGEDAALKRLRAFC--REQVQDYLQQRDFPAI--AGTSSLSPYLAIGVLSPRQCFNRL 257
Query: 119 K----KILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEK 173
+ ++L L ++ WREFY + P + + + +V W N+
Sbjct: 258 RAECPQVLENSDSGA--FGWLNELIWREFYRHLMVAYPALCRHRPFIEWTDRVRWRNNDA 315
Query: 174 YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELL 233
L AW G TGYP +DA MRQL GW+H+ R A FL + DL + W G+ F L
Sbjct: 316 LLLAWQKGATGYPIVDAAMRQLNKTGWMHNRLRMISASFLVK-DLLIDWRAGERYFMSQL 374
Query: 234 LDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
LD D A N G W W +++ +FR+++P G++ D
Sbjct: 375 LDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFD 413
>gi|221633352|ref|YP_002522577.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159]
gi|221156145|gb|ACM05272.1| deoxyribodipyrimidine photo-lyase [Thermomicrobium roseum DSM 5159]
Length = 467
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 108/216 (50%), Gaps = 8/216 (3%)
Query: 58 KFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPS-TTVLSPYLKFGCLSVRLFYH 116
+F E A +RL+ LA + N+L+ S ++ LSPY +FG LSVR +
Sbjct: 189 RFAPSEDAARQRLQHFLAQGLASYHLRR-----NALDGSGSSQLSPYFRFGLLSVREAWC 243
Query: 117 ELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
+ L A + L ++ WREFY + + P +M V W + L
Sbjct: 244 AAARYLDEPDAAAGARAWLDELLWREFYQHLLAAWPESARMSMQPEFRDVAWPGSNDALA 303
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
W G+TG+P +DA MRQL EGW+ + AR VA FL++ L + W EG+ F L+D
Sbjct: 304 RWQEGRTGFPVVDAAMRQLVSEGWMSNRARMIVASFLSK-LLLVDWREGERFFRRELVDG 362
Query: 237 DWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
D A N G W W + + +FR+++PV G++ D
Sbjct: 363 DLAANVGGWQWSAGTGTDAAPYFRIFNPVLQGEQHD 398
>gi|154250062|ref|YP_001410887.1| deoxyribodipyrimidine photo-lyase [Fervidobacterium nodosum
Rt17-B1]
gi|154153998|gb|ABS61230.1| Deoxyribodipyrimidine photo-lyase [Fervidobacterium nodosum
Rt17-B1]
Length = 436
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 10/175 (5%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
++ LSPY++FG LS+R KI P + Q+ WREF+Y + + F+K
Sbjct: 218 SSRLSPYIRFGVLSIR-------KIHNIASKVSP--EFVRQLAWREFWYHIKYNFSEFNK 268
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
++ + V W +EK E + + +TGYP +DA +RQL+ E W+H+ R VA FL +
Sbjct: 269 LEFLEKRRNVRWRYDEKLFEKFVNAQTGYPIVDAGIRQLKQENWMHNRVRLIVANFLVK- 327
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DL + W G+ F E LLD D +N GNW W ++ + R+++P+ +K D
Sbjct: 328 DLLIDWRIGEKFFREYLLDYDEVLNVGNWQWSASVGPDPKPLRIFNPMIQSEKFD 382
>gi|392545379|ref|ZP_10292516.1| deoxyribodipyrimidine photolyase [Pseudoalteromonas rubra ATCC
29570]
Length = 459
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 96/180 (53%), Gaps = 5/180 (2%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILAT--GPHAKPPVSLLGQIYWREFYYVVGSDTPN 153
T+ LSPYL G +SV+ E + A + P S + ++ WREFY + P
Sbjct: 225 GTSGLSPYLALGIVSVKQLLAESQLHFADLLQMTSAPAFSWINELIWREFYRHLICAYPK 284
Query: 154 FDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
K N+ VDW ++ + +AW G TGYP +DA MRQL GW+H+ R VA F
Sbjct: 285 LCKGANFNEKYDHVDWQQDDAHFKAWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIVASF 344
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
LT+ L + W +G+ F L+D D A N G W W +++ Q +FR+++P++ +K D
Sbjct: 345 LTK-HLLIDWRKGEHYFMSKLIDGDLASNNGGWQWAASTGCDAQPYFRIFNPISQSEKFD 403
>gi|336476980|ref|YP_004616121.1| deoxyribodipyrimidine photo-lyase [Methanosalsum zhilinae DSM 4017]
gi|335930361|gb|AEH60902.1| Deoxyribodipyrimidine photo-lyase [Methanosalsum zhilinae DSM 4017]
Length = 457
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 121/245 (49%), Gaps = 24/245 (9%)
Query: 30 CQGILHPDEHLVPTMK-EMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNT 88
G+ + L+P M+ E G S GG AL L + KF
Sbjct: 178 TSGLSTDKDDLLPKMEHEYGFHSS------VGGGRDNALAILAD-------LSKFADYEM 224
Query: 89 APNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFY-YVV 147
N TT LS + KFG +S+R YH + L P L+GQ+YWR+F+ +
Sbjct: 225 DRNYPSKETTRLSAHNKFGTVSIREVYHSIASELG------PDHPLIGQLYWRDFFTHAA 278
Query: 148 GSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARH 207
++ F K K ++W ++ + L W G TG+P IDA MRQL + G++H+ R
Sbjct: 279 YHNSFVFGKSLREKFE-NIEWSSDNEALSRWCAGNTGFPIIDAGMRQLNITGYMHNRIRM 337
Query: 208 AVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAF 266
A FL + DL++ W+ G+ F + L+D D +N GNW W +++ + Q +FR+++P +
Sbjct: 338 ITASFLVK-DLHIDWKWGEKYFAQKLVDYDPCVNNGNWQWAASTGYDSQPYFRMFNPWSQ 396
Query: 267 GKKTD 271
KK D
Sbjct: 397 QKKYD 401
>gi|256965091|ref|ZP_05569262.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis HIP11704]
gi|307273190|ref|ZP_07554436.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0855]
gi|256955587|gb|EEU72219.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis HIP11704]
gi|306510175|gb|EFM79199.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0855]
Length = 477
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 113/221 (51%), Gaps = 10/221 (4%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
+ IPL + GE A + L + K ++ +E P + T+ LS +L+ G LS+
Sbjct: 189 ARIPLTHYSVGEKTARRCLNTFIDQK--LQSYENKRDFP--YQDQTSHLSTFLRTGELSI 244
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R + EL A+ P + + ++ WR+FY ++ S P + + + W +
Sbjct: 245 RTIWQEL----ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQWTND 300
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+ F++
Sbjct: 301 PEMFAKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEKYFQK 359
Query: 232 LLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 360 MLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 400
>gi|16799672|ref|NP_469940.1| hypothetical protein lin0597 [Listeria innocua Clip11262]
gi|16413037|emb|CAC95829.1| lin0597 [Listeria innocua Clip11262]
Length = 467
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 123/238 (51%), Gaps = 17/238 (7%)
Query: 38 EHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPST 97
E L P +E E L F GE A RL + KE + ++K P +L+ T
Sbjct: 171 ESLFPNYEEQ-FRELIQDLPAFDSGEKAANTRLANFV--KEDLADYDKARDVP-ALD-KT 225
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
+ LS YL+ G +S+R + L+K AT A + ++ WR+FY ++ P K
Sbjct: 226 SHLSRYLRTGEISIRTVWQALQKEEATEGRA----TFEKELCWRDFYNMIYVSFP---KQ 278
Query: 158 KGNKICCQ---VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
K I ++W+ N ++ + W G+TG+P +DA MRQL+ GW+H+ R A FLT
Sbjct: 279 KNEPIQENYRFIEWENNREFFKKWQDGQTGFPLVDAAMRQLKETGWMHNRLRMITASFLT 338
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTD 271
+ DL + W G+ F+++L+D D A N G W W +++ +FR+++P +K D
Sbjct: 339 K-DLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFD 395
>gi|320158160|ref|YP_004190538.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus MO6-24/O]
gi|319933472|gb|ADV88335.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus MO6-24/O]
Length = 469
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 99/180 (55%), Gaps = 11/180 (6%)
Query: 97 TTVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPN 153
T+VLSPYL G +SVR L + L+ G L ++ WREFY+ + P
Sbjct: 236 TSVLSPYLAIGAISVRQCIARLYWQQSYLSNGREV-----WLSELIWREFYHHLIHFEPK 290
Query: 154 FDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
K +G + + W + E W G+TGYP +DA MRQL GW+H+ R VA F
Sbjct: 291 LVKGQGFVEWEKHLLWPAKPDWFERWCRGETGYPIVDAAMRQLNQTGWMHNRLRMIVASF 350
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
LT+ DL+++W G+ F + L+D D+A N G W W +++ Q +FR+++P+ G+K D
Sbjct: 351 LTK-DLHVNWRLGEQYFMQKLVDGDFAANNGGWQWCASTGCDGQPYFRIFNPITQGEKFD 409
>gi|433591509|ref|YP_007281005.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
gi|448333271|ref|ZP_21522481.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
gi|433306289|gb|AGB32101.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
gi|445623512|gb|ELY76922.1| deoxyribodipyrimidine photolyase [Natrinema pellirubrum DSM 15624]
Length = 467
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 114/237 (48%), Gaps = 16/237 (6%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANK---EWVRKFEKPNTAPNSLEPST 97
+PT+ ++G D+ P P T A + + ++ + + P E T
Sbjct: 176 IPTLADLGFDD---PEATPPTVTTAAARERVADFCSGPIYDYADRRDYP------AESGT 226
Query: 98 TVLSPYLKFGCLSVRLFYHELKKIL--ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+ LSP+LK+G + R Y +K A G + Q+ WREFY V + P
Sbjct: 227 SRLSPHLKWGTIGPRELYAATEKAAERAAGDDRESVREFQRQLAWREFYAHVLAFNPETV 286
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
+ +++W + LEAW G+TG P +DA MRQL EGW+H+ R VA FLT+
Sbjct: 287 TEDFSGYEHEIEWRDDPDALEAWQAGETGCPIVDAGMRQLHAEGWMHNRVRMLVASFLTK 346
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
DL L W G F L D D A + G W W +++ Q +FRV++P+ G++ D
Sbjct: 347 -DLLLDWRAGYDWFRRKLADHDTANDVGGWQWAASTGTDAQPYFRVFNPMKQGREYD 402
>gi|339021825|ref|ZP_08645812.1| deoxyribodipyrimidine photolyase [Acetobacter tropicalis NBRC
101654]
gi|338751178|dbj|GAA09116.1| deoxyribodipyrimidine photolyase [Acetobacter tropicalis NBRC
101654]
Length = 490
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 107/203 (52%), Gaps = 10/203 (4%)
Query: 70 LEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAK 129
+E +LA+ ++++ ++P+ + +T+ LSPYL+ G LS R +H + T A+
Sbjct: 225 VEDNLAH--YIQEHDRPD------KDTTSRLSPYLRAGLLSARQVWHAVSTAATTPALAE 276
Query: 130 PPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFID 189
L ++ WR+F ++ P+ + W + L AW G+TGYP +D
Sbjct: 277 NAEKFLSELGWRDFAWMQLFYEPDLAWRNLRPEFDHMPWQKSPALLAAWQQGQTGYPLVD 336
Query: 190 AIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLS 249
A MRQL GW+H+ R VA FLT+ L W EG+ F+ L+DAD A NA NW W +
Sbjct: 337 AGMRQLYATGWMHNRVRMVVASFLTK-HLLTDWREGEQWFQARLVDADPAQNAMNWQWCA 395
Query: 250 ASAF-FHQFFRVYSPVAFGKKTD 271
+ +FR+++PV +K D
Sbjct: 396 GTGIDASPWFRIFNPVGQSEKFD 418
>gi|217972489|ref|YP_002357240.1| deoxyribodipyrimidine photo-lyase [Shewanella baltica OS223]
gi|217497624|gb|ACK45817.1| Deoxyribodipyrimidine photo-lyase [Shewanella baltica OS223]
Length = 499
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 123/265 (46%), Gaps = 28/265 (10%)
Query: 13 LPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEK 72
LP P PA P + P HL + ++ + + GE +A + L
Sbjct: 187 LPLPVPAPLGPV--------LTEPKPHLFNNVTKVSSE-------LWAAGEGQAKRILSA 231
Query: 73 SLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVR----LFYHELKKILATGPHA 128
+ K V+ +++ P+ T+ +SPYL G +S R H+ +++
Sbjct: 232 FIQQK--VQDYKQDRDFPSI--DGTSSISPYLAIGVVSPRQCVAALLHDFPEVIVDD--T 285
Query: 129 KPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPF 187
P + L ++ WREFY + P+ K N+ V W N + AW G+TGYP
Sbjct: 286 SPARTWLNELTWREFYRHLLVAFPDLSKNHNFNRQADHVQWRNNPQEFAAWCEGRTGYPI 345
Query: 188 IDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMW 247
+DA MRQL GW+H+ R VA FLT+ L + W G+ F + L+D D A N G W W
Sbjct: 346 VDAAMRQLNQTGWMHNRLRMVVASFLTK-HLLIDWRWGERYFRQKLIDGDLAANNGGWQW 404
Query: 248 LSASAFFHQ-FFRVYSPVAFGKKTD 271
+ Q +FR+++P++ +K D
Sbjct: 405 SAGCGCDAQPYFRIFNPMSQSEKFD 429
>gi|336310565|ref|ZP_08565537.1| deoxyribodipyrimidine photolyase [Shewanella sp. HN-41]
gi|335866295|gb|EGM71286.1| deoxyribodipyrimidine photolyase [Shewanella sp. HN-41]
Length = 477
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 93/181 (51%), Gaps = 9/181 (4%)
Query: 97 TTVLSPYLKFGCLSVR----LFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTP 152
T+ +SPYL G +S R H +++A P + L ++ WREFY + P
Sbjct: 229 TSSMSPYLAIGVVSPRQCVAALLHHFPEVIADD--TSPARTWLNELTWREFYRHLLVAFP 286
Query: 153 NFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVAC 211
+ K N+ V W N + AW G+TGYP IDA MRQL GW+H+ R VA
Sbjct: 287 DLSKSHNFNRQADHVQWRNNPQEFAAWCEGRTGYPIIDAAMRQLNQTGWMHNRLRMVVAS 346
Query: 212 FLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKT 270
FLT+ L + W G+ F + L+D D A N G W W + Q +FR+++P++ +K
Sbjct: 347 FLTK-HLLIDWRWGERYFRQKLIDGDLAANNGGWQWSAGCGCDAQPYFRIFNPMSQSEKF 405
Query: 271 D 271
D
Sbjct: 406 D 406
>gi|390435874|ref|ZP_10224412.1| deoxyribodipyrimidine photolyase [Pantoea agglomerans IG1]
Length = 474
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 111/219 (50%), Gaps = 13/219 (5%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FP GE ALKRL + A + + + P +T+ LS YL G LS R H
Sbjct: 203 FPPGEAAALKRL-RHFATQPVI---DYPAKRDLPALDATSRLSVYLATGVLSPRQCLH-- 256
Query: 119 KKILATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKY 174
++L P A + L ++ WREFY + P + K V+W N+ +
Sbjct: 257 -RVLHEHPDALENSRAFTWLNELIWREFYRHLLVAWPALCRHKPFIDWTRNVEWQRNDAH 315
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
+AW GKTGYP +DA MRQ++ GW+H+ R A FL + DL + W EG+ F + L+
Sbjct: 316 FDAWKAGKTGYPIVDAAMRQMKALGWMHNRLRMITASFLVK-DLLIDWREGERYFMQQLI 374
Query: 235 DADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
D D A N G W W +++ +FR+++P G++ D+
Sbjct: 375 DGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDE 413
>gi|372277874|ref|ZP_09513910.1| deoxyribodipyrimidine photolyase [Pantoea sp. SL1_M5]
Length = 474
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 111/219 (50%), Gaps = 13/219 (5%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
FP GE ALKRL + A + + + P +T+ LS YL G LS R H
Sbjct: 203 FPPGEAAALKRL-RHFATQPVI---DYPAKRDLPALDATSRLSVYLATGVLSPRQCLH-- 256
Query: 119 KKILATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNFDKMKG-NKICCQVDWDTNEKY 174
++L P A + L ++ WREFY + P + K V+W N+ +
Sbjct: 257 -RVLHEHPDALDNSRAFTWLNELIWREFYRHLLVAWPALCRHKPFIDWTRNVEWQRNDAH 315
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
+AW GKTGYP +DA MRQ++ GW+H+ R A FL + DL + W EG+ F + L+
Sbjct: 316 FDAWKAGKTGYPIVDAAMRQMKALGWMHNRLRMITASFLVK-DLLIDWREGERYFMQQLI 374
Query: 235 DADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDK 272
D D A N G W W +++ +FR+++P G++ D+
Sbjct: 375 DGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDE 413
>gi|423413073|ref|ZP_17390193.1| hypothetical protein IE1_02377 [Bacillus cereus BAG3O-2]
gi|423431142|ref|ZP_17408146.1| hypothetical protein IE7_02958 [Bacillus cereus BAG4O-1]
gi|401102633|gb|EJQ10619.1| hypothetical protein IE1_02377 [Bacillus cereus BAG3O-2]
gi|401118167|gb|EJQ25999.1| hypothetical protein IE7_02958 [Bacillus cereus BAG4O-1]
Length = 476
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 97/179 (54%), Gaps = 5/179 (2%)
Query: 98 TVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNF 154
++L+ YL FG +SV+L +H L K S + Q+ WREF Y + P
Sbjct: 232 SMLATYLSFGQISVKLMFHYLINKSTERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 155 DKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
NK W+ E+ L W G+TGYPFIDA MR+L G++H+ AR AVA FL
Sbjct: 292 VYKPLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTDK 272
+ L + W+EG F + LLDAD A N W W++ S A +FR+++P+ G+K DK
Sbjct: 352 K-HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 409
>gi|186682403|ref|YP_001865599.1| DNA photolyase [Nostoc punctiforme PCC 73102]
gi|186464855|gb|ACC80656.1| DNA photolyase, FAD-binding [Nostoc punctiforme PCC 73102]
Length = 481
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 119/236 (50%), Gaps = 14/236 (5%)
Query: 41 VPTMKEMGL--DESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTT 98
+P+ K++G DE I GE A +RLE+ NK + ++++ P T+
Sbjct: 191 LPSAKDLGFIWDEQLI----ISPGEAAAQERLEE-FTNKA-ITEYQEQRNFPAV--DGTS 242
Query: 99 VLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLG---QIYWREFYYVVGSDTPNFD 155
LS LKFG + +R + + L + V++ ++ WREFY + P
Sbjct: 243 QLSAALKFGVIGIRTVWQATIEALENSRSEETAVNIRTWQQELAWREFYQHAMYNFPELA 302
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
W+TNE++ +AW G+TGYP +DA MRQ+ GW+H+ R VA FLT+
Sbjct: 303 DGAFRDTFKNFPWETNEEHFQAWCEGRTGYPIVDAAMRQMNESGWMHNRCRMIVASFLTK 362
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DL ++ + G+ F + L+D D + N G W W ++S + R+++P + +K D
Sbjct: 363 -DLLINPQLGEKYFMKHLIDGDLSANNGGWQWSASSGMDPKPVRIFNPASQTQKFD 417
>gi|418939862|ref|ZP_13493247.1| DNA photolyase FAD-binding protein [Rhizobium sp. PDO1-076]
gi|375053424|gb|EHS49818.1| DNA photolyase FAD-binding protein [Rhizobium sp. PDO1-076]
Length = 480
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 130/281 (46%), Gaps = 28/281 (9%)
Query: 2 TYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEH------LVPTMKEMGLDESSIP 55
Y LES +P+ AP SL PD L+PT + S I
Sbjct: 150 VYTPFWKALESSGEPREPAPAPASLNAPPS---WPDSEPLDSWALLPTKPNWAAEFSEI- 205
Query: 56 LCKFPGGETEALKRL----EKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
+ GE AL+RL E LA +R F P+T++LSP+L G +S
Sbjct: 206 ---WQPGEAGALERLDTFIENGLAGYRSLRDFPA--------RPNTSMLSPHLAMGEISP 254
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
+H + LA ++ + ++ WR+F Y + P+ N W +
Sbjct: 255 ARIWHATRG-LAGRFASEDIIHFRKEVVWRDFSYHLLFHFPDLKSKNWNSKFDAFPWRSA 313
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
L+ W G+TGYP +DA MRQL G++H+ R A FL + DL + W EG+ F +
Sbjct: 314 PDLLKKWQRGETGYPIVDAGMRQLWRHGYMHNRVRMIAASFLIK-DLMIDWREGERWFRD 372
Query: 232 LLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
L+DAD A NA +W W++ S A FFR+++P+ G+K D
Sbjct: 373 TLVDADPASNAASWQWVAGSGADASPFFRIFNPITQGEKFD 413
>gi|417097726|ref|ZP_11959367.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512]
gi|327193153|gb|EGE60063.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512]
Length = 482
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 97/179 (54%), Gaps = 3/179 (1%)
Query: 94 EPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPN 153
+P+T++LSP+L G +S + + + P A V +I WREF Y + + P
Sbjct: 238 KPATSMLSPHLALGEISPARIWDATRGLSKHVPAADI-VHFRKEIAWREFSYHLLAHFPR 296
Query: 154 FDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
+ +W EK +AWS G TGYP +DA MRQL GW+H+ R A FL
Sbjct: 297 LATANWDDRFDGFEWRRAEKDFKAWSRGMTGYPIVDAGMRQLWRYGWMHNRVRMIAASFL 356
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
+ DL + W G++ F + L+DAD A NA +W W++ S A FFR+++PV G+K D
Sbjct: 357 IK-DLMVDWRHGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGEKFD 414
>gi|37676017|ref|NP_936413.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus YJ016]
gi|37200557|dbj|BAC96383.1| deoxyribodipyrimidine photolyase [Vibrio vulnificus YJ016]
Length = 471
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 99/180 (55%), Gaps = 11/180 (6%)
Query: 97 TTVLSPYLKFGCLSVRLFYHEL---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPN 153
T+VLSPYL G +SVR L + L+ G L ++ WREFY+ + P
Sbjct: 238 TSVLSPYLAIGAISVRQCIARLYWQQSYLSNGREV-----WLSELIWREFYHHLIHFEPK 292
Query: 154 FDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
K +G + + W + E W G+TGYP +DA MRQL GW+H+ R VA F
Sbjct: 293 LVKGQGFVEWEKHLLWPAKPDWFERWCRGETGYPIVDAAMRQLNQTGWMHNRLRMIVASF 352
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
LT+ DL+++W G+ F + L+D D+A N G W W +++ Q +FR+++P+ G+K D
Sbjct: 353 LTK-DLHVNWRLGEQYFMQKLVDGDFAANNGGWQWCASTGCDGQPYFRIFNPITQGEKFD 411
>gi|386845211|ref|YP_006263224.1| deoxyribodipyrimidine photo-lyase [Actinoplanes sp. SE50/110]
gi|359832715|gb|AEV81156.1| deoxyribodipyrimidine photo-lyase [Actinoplanes sp. SE50/110]
Length = 436
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 106/212 (50%), Gaps = 14/212 (6%)
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKK 120
GGETE +RL+ KE R E + + +T+ LS YL+FGCLS L+
Sbjct: 185 GGETEGRRRLQAW--QKEMARYAEDHD---DMAADNTSRLSAYLRFGCLS------PLEL 233
Query: 121 ILATGPHAKPPV-SLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
LA P + L Q+ WR+FYY V + P + Q +W ++ L W
Sbjct: 234 ALAAKADDSPGAQAYLRQLCWRDFYYQVTATFPEISTRPLREKADQ-NWRYDDDALRHWQ 292
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
G TG P +DA MRQLR EGW+H+ AR A FLT+ L + W G F LLD D
Sbjct: 293 DGLTGVPIVDAGMRQLRAEGWMHNRARLITAAFLTK-HLGIDWRPGLQWFFRWLLDGDVP 351
Query: 240 MNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
N+GNW W + + + +R ++P+ ++ D
Sbjct: 352 NNSGNWQWTAGTGNDTRPYRRFNPIRQAQRFD 383
>gi|424761284|ref|ZP_18188866.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
R508]
gi|402402268|gb|EJV34989.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
R508]
Length = 477
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 113/221 (51%), Gaps = 10/221 (4%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
+ IPL + GE A + L + K ++ +E P + T+ LS +L+ G LS+
Sbjct: 189 ARIPLKHYSVGEKTARRCLNTFIDQK--LQSYENKRDFP--YQDQTSHLSTFLRTGELSI 244
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R + EL A+ P + + ++ WR+FY ++ S P + + + W +
Sbjct: 245 RTIWQEL----ASAPSSLSKETFKKELAWRDFYNMIYSTFPQQKEEAIQEKFRYIQWAND 300
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+ F++
Sbjct: 301 PEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEKYFQK 359
Query: 232 LLLDADWAMNAGNWMWLSASAFFH-QFFRVYSPVAFGKKTD 271
+L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 360 MLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 400
>gi|424044148|ref|ZP_17781771.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HENC-03]
gi|408888677|gb|EKM27138.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HENC-03]
Length = 471
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 99/180 (55%), Gaps = 9/180 (5%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPH---AKPPVSLLGQIYWREFYYVVGSDTPN 153
T+ LSPYL G LS R + ++ A P + + L +I WREFY + P
Sbjct: 238 TSQLSPYLAIGALSPR---QCIARLYAENPLPDLTEGKATWLSEIIWREFYQHLLVFEPK 294
Query: 154 FDKMKGNKICCQ-VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACF 212
+ KG + + W +E+ E W G TGYP +DA MRQL GW+H+ R VA F
Sbjct: 295 LVRGKGFIPWEEKIQWSYDEQAFERWKIGTTGYPIVDAAMRQLNTTGWMHNRLRMVVASF 354
Query: 213 LTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
LT+ DL++ W G++ F L+D D+A N G W W +++ Q +FR+++P++ G+K D
Sbjct: 355 LTK-DLHIDWRWGEAYFMSKLVDGDFAANNGGWQWSASTGCDGQPYFRIFNPISQGEKFD 413
>gi|117164673|emb|CAJ88219.1| putative deoxyribodipyrimidine photolyase [Streptomyces ambofaciens
ATCC 23877]
Length = 457
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 111/215 (51%), Gaps = 17/215 (7%)
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKK 120
GGET R SL ++ + +E + + +T+ LSPYL FG LS H ++
Sbjct: 198 GGETAGRDRF--SLWSRAGMSAYEDRHD--DLAGDATSRLSPYLHFGALSAVELVHRARR 253
Query: 121 ILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKY----LE 176
GP A+ + + Q+ WR+F++ V + P K + D EK +
Sbjct: 254 --RGGPGAE---AFVRQLCWRDFHHQVLAARP---KASAEDYRTRHDHWRGEKDAAADIS 305
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
AW G+TGYP +DA MRQLR EGW+H+ AR VA FLT+ LY+ W G F +LL+D
Sbjct: 306 AWREGRTGYPVVDAAMRQLRHEGWMHNRARLLVASFLTK-TLYVDWRIGARHFLDLLVDG 364
Query: 237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
D N NW W++ + + RV +PV G++ D
Sbjct: 365 DIVNNQLNWQWVAGTGTDTRPHRVLNPVVQGRRFD 399
>gi|422020244|ref|ZP_16366784.1| deoxyribodipyrimidine photolyase [Providencia alcalifaciens Dmel2]
gi|414101839|gb|EKT63436.1| deoxyribodipyrimidine photolyase [Providencia alcalifaciens Dmel2]
Length = 477
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 111/221 (50%), Gaps = 15/221 (6%)
Query: 58 KFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHE 117
+F GE AL +L + + + V+ +++ P T+ LSPYL G LS R
Sbjct: 200 QFTAGEHAALAKLRQFCSER--VQDYQRDRDIPAI--DGTSQLSPYLALGVLSPR---QC 252
Query: 118 LKKILATGPHA-----KPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQ-VDWDTN 171
+ ++LA P S L ++ WREFY + P + + Q + W+ +
Sbjct: 253 VNRLLAENPQVFDSQESGGFSWLNELIWREFYSHLLVAFPRLCRHQPFIEWTQHIQWNPD 312
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
E L AW +G+TGYP +DA MRQL GW+H+ R VA FL + DL + W +G+ F
Sbjct: 313 ETALTAWKNGQTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLVK-DLLVDWRKGEHYFMS 371
Query: 232 LLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
L+D A N G W W +++ +FR+++P GKK D
Sbjct: 372 QLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKFD 412
>gi|424870229|ref|ZP_18293891.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393165930|gb|EJC65977.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 483
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 94/179 (52%), Gaps = 3/179 (1%)
Query: 94 EPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPN 153
P+T++LSP+L G +S + + + P A V +I WREF Y + P
Sbjct: 239 RPTTSMLSPHLALGEISPARIWDATRGLSQRVPAADI-VHFRKEIAWREFSYHLLFHFPR 297
Query: 154 FDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFL 213
N +W + +AW G TGYP +DA MRQL GW+H+ R VA FL
Sbjct: 298 LASANWNDRFDGFEWRNDSGDFQAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFL 357
Query: 214 TRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGKKTD 271
+ DL + W G++ F + L+DAD A NA +W W++ S A FFR+++PV G+K D
Sbjct: 358 IK-DLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGEKFD 415
>gi|256959014|ref|ZP_05563185.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis DS5]
gi|257079045|ref|ZP_05573406.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis JH1]
gi|294781685|ref|ZP_06747020.1| FAD binding domain of DNA photolyase [Enterococcus faecalis PC1.1]
gi|307270984|ref|ZP_07552267.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4248]
gi|307289140|ref|ZP_07569096.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0109]
gi|397699913|ref|YP_006537701.1| deoxyribodipyrimidine photo-lyase [Enterococcus faecalis D32]
gi|422704508|ref|ZP_16762318.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1302]
gi|422708504|ref|ZP_16766032.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0027]
gi|422869328|ref|ZP_16915848.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
TX1467]
gi|256949510|gb|EEU66142.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis DS5]
gi|256987075|gb|EEU74377.1| deoxyribodipyrimidine photolyase [Enterococcus faecalis JH1]
gi|294451237|gb|EFG19704.1| FAD binding domain of DNA photolyase [Enterococcus faecalis PC1.1]
gi|306499849|gb|EFM69210.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0109]
gi|306512482|gb|EFM81131.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX4248]
gi|315037012|gb|EFT48944.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX0027]
gi|315164049|gb|EFU08066.1| FAD binding domain of DNA photolyase [Enterococcus faecalis TX1302]
gi|329571665|gb|EGG53346.1| putative deoxyribodipyrimidine photo-lyase [Enterococcus faecalis
TX1467]
gi|397336552|gb|AFO44224.1| deoxyribodipyrimidine photo-lyase [Enterococcus faecalis D32]
Length = 477
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 113/221 (51%), Gaps = 10/221 (4%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
+ IPL + GE A + L + K ++ +E P + T+ LS +L+ G LS+
Sbjct: 189 ARIPLTHYSVGEKTARRCLNTFIDQK--LQSYENKRDFP--YQDQTSHLSTFLRTGELSI 244
Query: 112 RLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTN 171
R + EL A+ P + + ++ WR+FY ++ S P + + + W +
Sbjct: 245 RTIWQEL----ASVPSSLSKETFKKELAWRDFYNMIYSAFPQQKEEAIQEKFRYIQWTND 300
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ W G+TGYP IDA MRQL GW+H+ R A FL + +L++ W G+ F++
Sbjct: 301 PEMFVKWQKGETGYPIIDAAMRQLNQTGWMHNRLRMITASFLVK-NLHIDWRWGEKYFQK 359
Query: 232 LLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+L+D D A N G W W +++ +FR+++P+ KK D
Sbjct: 360 MLIDYDAANNIGGWQWAASTGTDAVPYFRIFNPIIQSKKFD 400
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.136 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,771,065,696
Number of Sequences: 23463169
Number of extensions: 257340746
Number of successful extensions: 548447
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3525
Number of HSP's successfully gapped in prelim test: 525
Number of HSP's that attempted gapping in prelim test: 532668
Number of HSP's gapped (non-prelim): 8115
length of query: 315
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 173
effective length of database: 9,027,425,369
effective search space: 1561744588837
effective search space used: 1561744588837
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)