BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11420
(315 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P97784|CRY1_MOUSE Cryptochrome-1 OS=Mus musculus GN=Cry1 PE=1 SV=1
Length = 606
Score = 313 bits (803), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 151/273 (55%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q LVS +E P PAD + + +C L H +++ VP+++E+G D + +
Sbjct: 153 FQTLVSKME--PLEMPADTITSDVIGKCMTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>sp|Q32Q86|CRY1_RAT Cryptochrome-1 OS=Rattus norvegicus GN=Cry1 PE=2 SV=1
Length = 588
Score = 313 bits (803), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 151/273 (55%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q LVS +E P PAD + + +C L H +++ VP+++E+G D + +
Sbjct: 153 FQTLVSKME--PLEMPADTITSDVIGKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>sp|Q6ZZY0|CRY1_SYLBO Cryptochrome-1 OS=Sylvia borin GN=CRY1 PE=2 SV=1
Length = 620
Score = 312 bits (800), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + ++C + H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISRME--PLEMPVETITPEVMKKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>sp|Q8QG61|CRY1_CHICK Cryptochrome-1 OS=Gallus gallus GN=CRY1 PE=2 SV=1
Length = 621
Score = 312 bits (800), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 192/273 (70%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + ++C + H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISRME--PLEMPVETITPEVMQKCTTPVSDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>sp|Q16526|CRY1_HUMAN Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1
Length = 586
Score = 310 bits (794), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 191/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D + +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>sp|Q8WP19|CRY1_MACFA Cryptochrome-1 OS=Macaca fascicularis GN=CRY1 PE=2 SV=1
Length = 586
Score = 310 bits (793), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 148/273 (54%), Positives = 191/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D + +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKRNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>sp|Q5IZC5|CRY1_ERIRU Cryptochrome-1 OS=Erithacus rubecula GN=CRY1 PE=2 SV=2
Length = 620
Score = 308 bits (788), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 147/273 (53%), Positives = 191/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + ++C + H +++ VP+++E+G D +P +
Sbjct: 153 FQTLISRME--PLEMPVETITPEVMKKCTTPVFDDHDEKYGVPSLEELGFDTDGLPSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L K V FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERKASVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SVNAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>sp|Q0E2Y1|UVR3_ORYSJ (6-4)DNA photolyase OS=Oryza sativa subsp. japonica GN=UVR3 PE=3
SV=1
Length = 551
Score = 307 bits (786), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 158/275 (57%), Positives = 198/275 (72%), Gaps = 8/275 (2%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHL-VPTMKEMGL-DESSIPLCK 58
MTYQ V++ P+P + + LP G E L VP ++E+G D S L
Sbjct: 173 MTYQSFVAIAGE--PPEPIMEEYSELPP--VGDTGEYELLPVPRVEELGYGDISQEDLSL 228
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTTVLSPYLKFGCLSVRLFYHE 117
F GGETEALKR+ +SL +KEWV KFEKP P++ L+P+TTVLSPYLKFGCLS R FYH
Sbjct: 229 FRGGETEALKRMRESLHDKEWVAKFEKPKGDPSAFLKPATTVLSPYLKFGCLSSRYFYHC 288
Query: 118 LKKIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLE 176
++ I +T H PPVSL GQ+ WR+F+Y V TPNFD+MKGNKIC Q+ W NE+
Sbjct: 289 IQDIYRSTKKHTNPPVSLTGQLLWRDFFYTVAFGTPNFDQMKGNKICKQIPWTENEELFP 348
Query: 177 AWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236
AW G+TGYP+IDAIM QLR GW+HHLARH+VACFLTRGDL++ WE+G+ VFE LL+D+
Sbjct: 349 AWRDGRTGYPWIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDS 408
Query: 237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
DWA+N GNWMWLS S+FF+Q+ R+YSP +FGKK D
Sbjct: 409 DWAINNGNWMWLSCSSFFYQYHRIYSPTSFGKKYD 443
>sp|Q70AD6|CRY1_SPAJD Cryptochrome-1 OS=Spalax judaei GN=CRY1 PE=2 SV=1
Length = 587
Score = 304 bits (778), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 145/273 (53%), Positives = 189/273 (69%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E P P + + + +C L H +++ VP+++E+G D + +
Sbjct: 153 FQTLISKME--PLEIPVETITSEVIEKCTTPLSDDHDEKYGVPSLEELGFDTDGLSSAVW 210
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
PGGETEAL RLE+ L + WV FE+P NSL S T LSPYL+FGCLS RLFY +L
Sbjct: 211 PGGETEALTRLERHLERRAWVANFERPRMNANSLLASPTGLSPYLRFGCLSCRLFYFKLT 270
Query: 120 KILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FDKM+GN IC Q+ WD N + L W
Sbjct: 271 DLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKW 330
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ G+TG+P+IDAIM QLR EGWIHHLARHAVACFLT DL++SWEEG VFEELLLDADW
Sbjct: 331 AEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTGSDLWISWEEGMKVFEELLLDADW 390
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS S+FF QFF Y PV FG++TD
Sbjct: 391 SINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTD 423
>sp|Q9R194|CRY2_MOUSE Cryptochrome-2 OS=Mus musculus GN=Cry2 PE=1 SV=1
Length = 592
Score = 299 bits (765), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 149/276 (53%), Positives = 191/276 (69%), Gaps = 12/276 (4%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E LPK KPA + C+ + H D + VP+++E+G + +
Sbjct: 171 FQALISRME-LPK-KPAVAVSSQQMESCRAEIQENHDDTYGVPSLEELGFPTEGLGPAVW 228
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL- 118
GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+ L
Sbjct: 229 QGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLW 288
Query: 119 ---KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L
Sbjct: 289 DLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEAL 345
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLD
Sbjct: 346 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLD 405
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 406 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 441
>sp|O48652|UVR3_ARATH (6-4)DNA photolyase OS=Arabidopsis thaliana GN=UVR3 PE=1 SV=2
Length = 556
Score = 298 bits (762), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 141/234 (60%), Positives = 176/234 (75%), Gaps = 3/234 (1%)
Query: 41 VPTMKEMGL-DESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS-LEPSTT 98
VP+++E+G D+ F GGE+EALKRL KS+++K WV FEKP P++ L+P+TT
Sbjct: 218 VPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKAWVANFEKPKGDPSAFLKPATT 277
Query: 99 VLSPYLKFGCLSVRLFYHELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
V+SPYLKFGCLS R FY L+ I H PPVSLLGQ+ WREF+Y TPNFDKM
Sbjct: 278 VMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLLWREFFYTTAFGTPNFDKM 337
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
KGN+IC Q+ W+ + L AW GKTGYP+IDAIM QL GW+HHLARH VACFLTRGD
Sbjct: 338 KGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGD 397
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
L++ WE+G+ VFE LL+D+DWA+N GNWMWLS S+FF+QF R+YSP++FGKK D
Sbjct: 398 LFIHWEQGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQFNRIYSPISFGKKYD 451
>sp|Q923I8|CRY2_RAT Cryptochrome-2 OS=Rattus norvegicus GN=Cry2 PE=2 SV=1
Length = 594
Score = 296 bits (759), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 146/273 (53%), Positives = 188/273 (68%), Gaps = 6/273 (2%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPLCKF 59
+Q L+S +E LPK KP + C+ + H D + VP+++E+G + +
Sbjct: 171 FQALISRME-LPK-KPVGAVSSQHMENCRAEIQENHDDTYGVPSLEELGFPTEGLGPAVW 228
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+ L
Sbjct: 229 QGGETEALVRLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYYRLW 288
Query: 120 KIL-ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L W
Sbjct: 289 DLYRKVKRNSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNPEALAKW 348
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLDAD+
Sbjct: 349 AEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADF 408
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 409 SVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 441
>sp|Q8QG60|CRY2_CHICK Cryptochrome-2 OS=Gallus gallus GN=CRY2 PE=2 SV=2
Length = 582
Score = 296 bits (757), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 142/276 (51%), Positives = 189/276 (68%), Gaps = 5/276 (1%)
Query: 1 MTYQKLVSVLESLPKPK-PADDAPTSLPRECQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK P + C+ + H D + VP+++E+G +
Sbjct: 157 LTYKRFQAIISRMELPKKPVSSIVSQQMETCKVDIQENHDDVYGVPSLEELGFPTDGLAP 216
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 217 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 276
Query: 117 ELKKILA-TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
L ++ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N + L
Sbjct: 277 RLWELYKKVKRNSTPPLSLYGQLLWREFFYTAATNNPKFDRMEGNPICIQIPWDKNPEAL 336
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+ELLLD
Sbjct: 337 AKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLD 396
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
AD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 397 ADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 432
>sp|Q49AN0|CRY2_HUMAN Cryptochrome-2 OS=Homo sapiens GN=CRY2 PE=1 SV=2
Length = 593
Score = 295 bits (754), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 145/279 (51%), Positives = 191/279 (68%), Gaps = 11/279 (3%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSLPRE-CQGIL---HPDEHLVPTMKEMGLDESSIPL 56
+TY++ +++ + PK TS E C+ + H + + VP+++E+G +
Sbjct: 167 LTYKRFQAIISRMELPKKPVGLVTSQQMESCRAEIQENHDETYGVPSLEELGFPTEGLGP 226
Query: 57 CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
+ GGETEAL RL+K L K WV +E+P NSL S T LSPYL+FGCLS RLFY+
Sbjct: 227 AVWQGGETEALARLDKHLERKAWVANYERPRMNANSLLASPTGLSPYLRFGCLSCRLFYY 286
Query: 117 EL----KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
L KK+ ++ PP+SL GQ+ WREF+Y ++ P FD+M+GN IC Q+ WD N
Sbjct: 287 RLWDLYKKVKR---NSTPPLSLFGQLLWREFFYTAATNNPRFDRMEGNPICIQIPWDRNP 343
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
+ L W+ GKTG+P+IDAIM QLR EGWIHHLARHAVACFLTRGDL++SWE G VF+EL
Sbjct: 344 EALAKWAEGKTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDEL 403
Query: 233 LLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LLDAD+++NAG+WMWLS SAFF QFF Y PV FG++TD
Sbjct: 404 LLDADFSVNAGSWMWLSCSAFFQQFFHCYCPVGFGRRTD 442
>sp|O77059|CRY1_DROME Cryptochrome-1 OS=Drosophila melanogaster GN=cry PE=1 SV=1
Length = 542
Score = 183 bits (464), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 135/224 (60%), Gaps = 13/224 (5%)
Query: 61 GGETEALKRLEKSLANKE--WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY--- 115
GGET+AL L++ L ++ + R F PN A ++ S +S +L+FGCLSVR FY
Sbjct: 225 GGETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSV 284
Query: 116 HELKKIL-----ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDW-D 169
H+L K + G + GQ+ WRE++Y + + PN+D+M+GN IC + W
Sbjct: 285 HDLFKNVQLRACVRGVQMTGGAHITGQLIWREYFYTMSVNNPNYDRMEGNDICLSIPWAK 344
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
NE L++W G+TG+P ID MRQL EGW+HH R+ VA FLTRG L+ SWE G F
Sbjct: 345 PNENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHF 404
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFR--VYSPVAFGKKTD 271
+ LLDADW++ AGNWMW+S+SAF V PVA K+ D
Sbjct: 405 LKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLD 448
>sp|Q293P8|CRY1_DROPS Cryptochrome-1 OS=Drosophila pseudoobscura pseudoobscura GN=cry
PE=3 SV=2
Length = 540
Score = 181 bits (458), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 161/293 (54%), Gaps = 22/293 (7%)
Query: 1 MTYQKLVSVLESLP-KPKPADDAPTSLPRECQGILHPDEHL-----VPTMKEMGLDESSI 54
+TYQ + ++ + P+PA DA + Q +HL VP + + ++
Sbjct: 156 LTYQMFLHTVQIIGVPPRPAIDAHINDATFIQLAPELRQHLGCFDQVPNPEHFNIYSDNM 215
Query: 55 PL---CKFPGGETEALKRLEKSLA--NKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCL 109
+ GGET+AL LE+ L + R + PN A +++ + +S +L+FGCL
Sbjct: 216 GFLAKINWRGGETQALALLEERLKVERNAFERGYYLPNQANPNIQEAPKSMSAHLRFGCL 275
Query: 110 SVRLFY---HELKKIL-----ATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNK 161
SVR FY H+L + + G + + GQ+ WRE++Y + + PN+D+M+GN+
Sbjct: 276 SVRRFYWSVHDLFENVQLAACVRGVQIEGGAHITGQLIWREYFYTMSVNNPNYDRMEGNE 335
Query: 162 ICCQVDW-DTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYL 220
IC + W +E L+ W G+TG+P ID MRQL EGW+HH R+ VA FLTRG L+
Sbjct: 336 ICLTIPWAKPDENLLQRWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQ 395
Query: 221 SWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFR--VYSPVAFGKKTD 271
SWE G F + LLDADW++ AGNWMW+S+SAF V PVA K+ D
Sbjct: 396 SWEPGLKHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLD 448
>sp|Q7PYI7|CRY1_ANOGA Cryptochrome-1 OS=Anopheles gambiae GN=Cry1 PE=2 SV=4
Length = 545
Score = 171 bits (433), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 159/296 (53%), Gaps = 31/296 (10%)
Query: 1 MTYQKL---VSVLESLPKPKPADD--------APTSLPRE---CQGILHPDEHLVPTMKE 46
+TYQ V+++ P+P A + P L E CQ + PD+ +
Sbjct: 156 LTYQMFLHTVNIIGDPPRPVGAPNFEYVEFGRVPALLASELKLCQQMPAPDDFGIHYD-- 213
Query: 47 MGLDESSIPLCKFPGGETEALKRLEKSLANKE--WVRKFEKPNTA-PNSLEPSTTVLSPY 103
+ I K+ GGET AL+ L L +E + + P A P L P+T+ +S
Sbjct: 214 ---GNARIAFQKWIGGETRALEALGARLKQEEEAFREGYYLPTQAKPEILGPATS-MSAA 269
Query: 104 LKFGCLSVRLFY---HELKKILATGPHAKPPVS--LLGQIYWREFYYVVGSDTPNFDKMK 158
L+FGCLSVR+FY H+L + + K P + GQ+ WRE++Y + P++ +M+
Sbjct: 270 LRFGCLSVRMFYWCVHDLFAKVQSNSQFKYPGGHHITGQLIWREYFYTMSVQNPHYGEME 329
Query: 159 GNKICCQVDW-DTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
N IC + W + L W G+TG+P IDA MRQL EGW+HH+ R+ A FLTRG
Sbjct: 330 RNPICLNIPWYKPEDDSLTRWKEGRTGFPMIDAAMRQLLAEGWLHHILRNITATFLTRGG 389
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF--FHQFFRVYSPVAFGKKTD 271
L+LSWEEG F + LLDADW++ AGNWMW+S+SAF + P+A ++ D
Sbjct: 390 LWLSWEEGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSKCTCPIALARRLD 445
>sp|Q17DK5|CRY1_AEDAE Cryptochrome-1 OS=Aedes aegypti GN=cry PE=3 SV=1
Length = 545
Score = 168 bits (425), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 136/222 (61%), Gaps = 12/222 (5%)
Query: 61 GGETEALKRLEKSLANKE--WVRKFEKPNTA-PNSLEPSTTVLSPYLKFGCLSVRLFY-- 115
GGET+AL+ L L +E ++ + P A P L P T+ +S L+FGCLSVR+FY
Sbjct: 224 GGETKALECLGHRLKQEEEAFLGGYFLPTQAKPEFLVPPTS-MSAALRFGCLSVRMFYWC 282
Query: 116 -HEL-KKILATGPHAKPPVS-LLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDW-DTN 171
H+L +K+ A + P + GQ+ WRE++Y + P++ +M+ N IC + W +
Sbjct: 283 VHDLYEKVQANNQYRNPGGQHITGQLIWREYFYTMSVHNPHYAEMEANPICLNIPWYEPK 342
Query: 172 EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEE 231
+ L+ W G+TG+P IDA MRQL EGW+HH+ R+ A FLTRG L++SWE G F +
Sbjct: 343 DDSLDRWKEGRTGFPMIDAAMRQLLAEGWLHHILRNITATFLTRGALWISWEAGVQHFLK 402
Query: 232 LLLDADWAMNAGNWMWLSASAF--FHQFFRVYSPVAFGKKTD 271
LLDADW++ AGNWMW+S+SAF SP+A ++ D
Sbjct: 403 YLLDADWSVCAGNWMWVSSSAFEKLLDSSSCTSPIALARRLD 444
>sp|B0WRR9|CRY1_CULQU Cryptochrome-1 OS=Culex quinquefasciatus GN=cry PE=3 SV=1
Length = 499
Score = 165 bits (418), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 134/225 (59%), Gaps = 12/225 (5%)
Query: 58 KFPGGETEALKRLEKSLANKE--WVRKFEKPNTA-PNSLEPSTTVLSPYLKFGCLSVRLF 114
++ GGE +AL+ L + L +E + + P A P+ L P ++ +S L+FGCLSVR+F
Sbjct: 175 RWTGGEAKALELLGRRLKQEEEAFREGYYLPTQARPDFLAPPSS-MSAALRFGCLSVRMF 233
Query: 115 Y---HELKKILATGPHAKPPVS--LLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDW- 168
Y H+L + K P + GQ+ WRE++Y + P++ M+ N IC + W
Sbjct: 234 YWCVHDLFARVQANNQLKHPGGHHITGQLIWREYFYTMSVHNPHYAVMELNPICLNIPWY 293
Query: 169 DTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSV 228
+ + L+ W G+TG+P IDA MRQL EGW+HH+ R+ A FLTRG L++SWE G
Sbjct: 294 EAKDDSLDRWKEGRTGFPLIDAAMRQLMAEGWLHHILRNITATFLTRGGLWISWEAGVQH 353
Query: 229 FEELLLDADWAMNAGNWMWLSASAF--FHQFFRVYSPVAFGKKTD 271
F + LLDADW++ AGNWMW+S+SAF SPVA ++ D
Sbjct: 354 FLKYLLDADWSVCAGNWMWVSSSAFEKLLDSSSCTSPVALARRLD 398
>sp|Q9HQ46|PHR_HALSA Deoxyribodipyrimidine photo-lyase OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=phr PE=3
SV=2
Length = 481
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 118/235 (50%), Gaps = 10/235 (4%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
+P+++E+G E P P T A + L + + ++E P+ E T+ L
Sbjct: 189 LPSVQELGFAE---PEAAVPDAGTAAARSLLDAFRESGDIYRYEDRRDYPH--EEPTSRL 243
Query: 101 SPYLKFGCLSVRLFYHELKKILA---TGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
SP+LKFG + +R Y + + T + + +GQ+ WREFY V N
Sbjct: 244 SPHLKFGTIGIRTVYEAARAAKSDADTDDERENVAAFIGQLAWREFYAQVLYFNQNVVSE 303
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
++W + L+AW G+TGYP +DA MRQLR E ++H+ R VA FLT+ D
Sbjct: 304 NFKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAEAYMHNRVRMIVAAFLTK-D 362
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
L + W G F E L D D A + G W W +++ Q +FRV++P+ G++ D
Sbjct: 363 LLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYFRVFNPMTQGERYD 417
>sp|P05327|PHR_SYNP6 Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4
Length = 484
Score = 121 bits (303), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 129/273 (47%), Gaps = 25/273 (9%)
Query: 11 ESLPKPKPADDAPTSL----PRECQGILHPDEHLVPTMKEMGLD-ESSIPLCKFPGGETE 65
++ PKP P PT L P + I +PT+K++G D + P+ GET
Sbjct: 157 QAQPKPTPVA-TPTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGGFPVEP---GETA 212
Query: 66 ALKRLE----KSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVR--LFYHELK 119
A+ RL+ +++A+ + R F E T+ LSP LKFG + +R
Sbjct: 213 AIARLQEFCDRAIADYDPQRNFPA--------EAGTSGLSPALKFGAIGIRQAWRAASAA 264
Query: 120 KILATGPHAKPPVSLLGQ-IYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
L+ A+ + + Q + WREFY P+ + Q W+ E AW
Sbjct: 265 HALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAW 324
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
+ +TGYP +DA MRQL GW+H+ VA FLT+ DL + W G+ F + L+D D
Sbjct: 325 TQAQTGYPIVDAAMRQLTETGWMHNRCWMIVASFLTK-DLIIDWRRGEQFFMQHLVDGDL 383
Query: 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
A N G W W ++S + R+++P + KK D
Sbjct: 384 AANNGGWQWSASSGMDPKPLRIFNPASQAKKFD 416
>sp|Q9KNA8|PHR_VIBCH Deoxyribodipyrimidine photo-lyase OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=phrA PE=1
SV=1
Length = 469
Score = 120 bits (301), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 101/181 (55%), Gaps = 11/181 (6%)
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
T+ LSPYL G LS R L + G ++ L ++ WREFY + + PN K
Sbjct: 236 TSSLSPYLAIGVLSARQCVARLYHESSMGELSEGAQVWLSELIWREFYQHLVAIEPNLSK 295
Query: 157 MK-----GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVAC 211
+ G ++ W+ NEK+ + W GKTGYP +DA MRQL GW+H+ R VA
Sbjct: 296 SRDFVEWGARLEW---WNDNEKF-QLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351
Query: 212 FLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKT 270
FLT+ DL++ W G+ F L+D D+A N G W W +++ Q +FR+++PV+ G+K
Sbjct: 352 FLTK-DLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKF 410
Query: 271 D 271
D
Sbjct: 411 D 411
>sp|Q4KML2|CRYD_DANRE Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2
Length = 520
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 14/252 (5%)
Query: 2 TYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPL--CK- 58
Y + +E+ + +P P + G+ +E +PT +G E PL C+
Sbjct: 158 VYTQFRKAVEAQGRVRPVLSTPEQVKSPPSGL---EEGPIPTFDSLGQTE---PLDDCRS 211
Query: 59 -FP--GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFY 115
FP GGETEAL RL+ + V +++ ++ ST SP+L GC+S R Y
Sbjct: 212 AFPCRGGETEALARLKHYFWDTNAVATYKETRNGMIGVDFSTK-FSPWLALGCISPRYIY 270
Query: 116 HELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
++KK + ++ ++ WR+++ V N V W+T+ K
Sbjct: 271 EQIKKYEVERTANQSTYWVIFELLWRDYFKFVALKYGNRIFYMNGLQDKHVPWNTDMKMF 330
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
+AW G+TG PF+DA MR+L L G++ + R VA FLT+ DL L W G FE LL+D
Sbjct: 331 DAWKEGRTGVPFVDANMRELALTGFMSNRGRQNVASFLTK-DLGLDWRLGAEWFEYLLVD 389
Query: 236 ADWAMNAGNWMW 247
D N GNW++
Sbjct: 390 HDVCSNYGNWLY 401
>sp|Q04449|PHR_BACPE Deoxyribodipyrimidine photo-lyase OS=Bacillus pseudofirmus (strain
OF4) GN=phr PE=3 SV=2
Length = 479
Score = 115 bits (287), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 115/213 (53%), Gaps = 11/213 (5%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVR-LFYHELKK 120
GE A+KRL+ + K+ + ++ P+ T+ LSPY+K G +S R ++YH
Sbjct: 210 GEEHAIKRLQ--MFTKKRLSGYKANRDFPSIT--GTSRLSPYIKTGAVSSRSIYYH---- 261
Query: 121 ILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSH 180
IL + + L ++ WR+FY +V P+ + + +++W ++ L +W
Sbjct: 262 ILNAEADSYSAETFLKELAWRDFYRMVHFYEPDCKDREIMEGYRELNWSHDQDDLTSWKR 321
Query: 181 GKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAM 240
G+TG+P +DA MRQL EGW+H+ R A FLT+ DL + W G+ FE +L+D D +
Sbjct: 322 GETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTK-DLLIDWRLGERYFERMLIDYDPSS 380
Query: 241 NAGNWMW-LSASAFFHQFFRVYSPVAFGKKTDK 272
N G W W S +FR+++PV K+ D+
Sbjct: 381 NIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDE 413
>sp|P12768|PHR_STRGR Deoxyribodipyrimidine photo-lyase OS=Streptomyces griseus GN=phr
PE=3 SV=1
Length = 455
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 94/176 (53%), Gaps = 8/176 (4%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
+T+ LSP+L FG +S H ++ G A + Q+ WR+F++ V +D P D
Sbjct: 230 ATSRLSPHLHFGTVSAAELVHRAREKGGLGGEA-----FVRQLAWRDFHHQVLADRP--D 282
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
+ W ++ + AW G TGYP +DA MRQL EGW+H+ AR A FLT+
Sbjct: 283 ASWSDYRPRHDRWRSDADEMHAWKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASFLTK 342
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
LY+ W EG F +LL+D D A N NW W++ + + RV +PV GK+ D
Sbjct: 343 -TLYVDWREGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRPNRVLNPVIQGKRFD 397
>sp|P00914|PHR_ECOLI Deoxyribodipyrimidine photo-lyase OS=Escherichia coli (strain K12)
GN=phrB PE=1 SV=1
Length = 472
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 112/225 (49%), Gaps = 13/225 (5%)
Query: 52 SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSV 111
S FP E A+ +L + N ++E+ P ++E T+ LS L G LS
Sbjct: 194 QSFDTAHFPVEEKAAIAQLRQFCQNG--AGEYEQQRDFP-AVE-GTSRLSASLATGGLSP 249
Query: 112 RLFYHELKKILATGPHA---KPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKI-CCQVD 167
R H ++LA P A L ++ WREFY + + P+ K + +V
Sbjct: 250 RQCLH---RLLAEQPQALDGGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQ 306
Query: 168 WDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQS 227
W +N +L+AW GKTGYP +DA MRQL GW+H+ R A FL + DL + W EG+
Sbjct: 307 WQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK-DLLIDWREGER 365
Query: 228 VFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
F L+D D A N G W W +++ +FR+++P G+K D
Sbjct: 366 YFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFD 410
>sp|Q7UJB1|CRYD_RHOBA Cryptochrome DASH OS=Rhodopirellula baltica (strain SH1) GN=cry
PE=3 SV=2
Length = 488
Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 117/235 (49%), Gaps = 7/235 (2%)
Query: 41 VPTMKEMGLDESSIP---LCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPS- 96
+PT++ +GL + L +F GG+ A +R+E+ + N++ +R +++ T L P+
Sbjct: 188 IPTLESLGLSTPPLDDRCLNQFTGGQNAAQQRMEEYIWNEDRLRVYKE--TRNGMLHPND 245
Query: 97 TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156
++ SP+L GCLS R+ +++ K ++ ++ WR+++ +
Sbjct: 246 SSKFSPWLAQGCLSPRMIADHVRRYEEERVKNKSTYWMIFELLWRDYFRWISRKHGATLF 305
Query: 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRG 216
G VDW ++ + W G TGYP +DA MR+LR G++ + R VA FLT+
Sbjct: 306 RAGGLRGVNVDWKSDRELFRRWQDGTTGYPLVDANMRELRTTGYMSNRGRQNVASFLTK- 364
Query: 217 DLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+L + W G FE L+D D A N GNW + + + FR ++ + D
Sbjct: 365 NLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARGFRFFNITKQSRDYD 419
>sp|Q55081|PHR_SYNY3 Deoxyribodipyrimidine photo-lyase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=phrA PE=1 SV=1
Length = 488
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 128/262 (48%), Gaps = 20/262 (7%)
Query: 22 APTSLPRECQGI-------LHPDEHL-VPTMKEMGLD-ESSIPLCKFPGGETEALKRLEK 72
+P P++ QG+ L P E L +P + ++G + +PL GE A +RL+
Sbjct: 177 SPVPTPKDLQGLTPAEKEKLAPLEPLAIPQLADLGFIWDQPLPLTP---GEEAAEQRLDW 233
Query: 73 SLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPV 132
+A+ + ++++ P +L+ T+ LS LKFG +S R + + +
Sbjct: 234 FVAHG--LEEYQQNRNFP-ALD-GTSQLSAALKFGVISPRTLWQTTLEAWEQSRSEEARA 289
Query: 133 SL---LGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFID 189
S+ ++ WREFY P + + W+ N+ + +AW G+TGYP ID
Sbjct: 290 SIETWQQELAWREFYQHCLYSFPALAQGPYRSPFQEFPWEENQDHFQAWCEGRTGYPIID 349
Query: 190 AIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLS 249
A M QL GW+H+ R VA FL + DL L+W+ G+ F + L D D A N G W W +
Sbjct: 350 AAMAQLNQTGWMHNRCRMIVASFLIK-DLILNWQWGELYFMQTLYDGDLAANNGGWQWSA 408
Query: 250 ASAFFHQFFRVYSPVAFGKKTD 271
+S + R+++P +K D
Sbjct: 409 SSGMDPKPLRIFNPHTQAQKFD 430
>sp|P57386|PHR_BUCAI Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=phrB PE=3 SV=1
Length = 483
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 112/225 (49%), Gaps = 24/225 (10%)
Query: 59 FPGGETEALKRLEKSLANK--EWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYH 116
FP GE EA+ RL+ K ++ K + P +T++LSPYL G +S R +
Sbjct: 203 FPVGEKEAINRLKNFCIYKFNDYFLKRDYP------FLDATSMLSPYLSAGIISSR---Y 253
Query: 117 ELKKILATGPHAKPPVSL----LGQIYWREFYYVVGSDTPNFDKMKGNKICC---QVDWD 169
LK +L T V L QI WREFYY + P + + + ++ W
Sbjct: 254 CLKVLLKTKNSLPLNVLLTSPWFDQILWREFYYHLLIGFPKISRSES--LVTWEKEIHWI 311
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
N K+ AW G TG+P IDA MRQL GW+H+ R + FL + +L ++W EG+ F
Sbjct: 312 NNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVK-NLLINWREGEEHF 370
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQ--FFRVYSPVAFGKKTDK 272
L+D D A+N G W W SAS + R+++P+ K D+
Sbjct: 371 ISNLIDGDLALNNGGWQW-SASVGCDSVPYIRIFNPLHQSKTFDE 414
>sp|Q89AJ9|PHR_BUCBP Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=phrB PE=3 SV=1
Length = 478
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 117/262 (44%), Gaps = 25/262 (9%)
Query: 21 DAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWV 80
+ P+ P+ LH L T+ FP GE ++L+ +
Sbjct: 167 NIPSCFPKPQNKNLHDHYSLDFTIPIFHTYLEKFDANIFPIGEDIVYEKLKFFIK----- 221
Query: 81 RKFEKPNTAPNSLE-PSTTVLSPYLKFGCLS----VRLFYHELKKILATGPHAKPPVSLL 135
F K N E ST++LS +L G +S V L + E I+ H +
Sbjct: 222 YAFNKYNFDQEIFELNSTSMLSAHLSIGVISPRQCVTLLFKEYPDII----HKLEECKWI 277
Query: 136 GQIYWREFYYVVGSDTPNFDKMKG-----NKICCQVDWDTNEKYLEAWSHGKTGYPFIDA 190
++ WREFY + PN + + N+I WD N YL W G TGYP IDA
Sbjct: 278 NELLWREFYQHLLYFYPNIGQNQSLYHWENRI----KWDNNLYYLNLWKQGNTGYPIIDA 333
Query: 191 IMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWL-S 249
MRQL+ GWI + R A FL + +L + W +G+ F L+D D+A N GNW W+ S
Sbjct: 334 GMRQLKQLGWISNRLRMITASFLVK-NLLIDWRKGEEYFMSQLIDGDFASNNGNWQWIAS 392
Query: 250 ASAFFHQFFRVYSPVAFGKKTD 271
+FR+++P+ KK D
Sbjct: 393 VGTDSMPYFRIFNPMLQSKKFD 414
>sp|P25078|PHR_SALTY Deoxyribodipyrimidine photo-lyase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=phrB PE=1 SV=2
Length = 473
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 93/182 (51%), Gaps = 9/182 (4%)
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHA---KPPVSLLGQIYWREFYYVVGSDTP 152
T+ LS L G LS R H ++LA P A P L ++ WREFY + + P
Sbjct: 235 GTSRLSASLATGGLSPRQCLH---RLLAEQPQALDGGPGSVWLNELIWREFYRHLMTWYP 291
Query: 153 NFDKMKG-NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVAC 211
K + + +V W N Y +AW G+TGYP +DA MRQL GW+H+ R A
Sbjct: 292 ALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITAS 351
Query: 212 FLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKT 270
FL + DL + W G+ F L+D D A N G W W +++ +FR+++P G++
Sbjct: 352 FLVK-DLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERF 410
Query: 271 DK 272
D+
Sbjct: 411 DR 412
>sp|Q84KJ5|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=CRYD PE=1 SV=2
Length = 569
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 105/209 (50%), Gaps = 5/209 (2%)
Query: 41 VPTMKEMGLDESSIPL-CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPS-TT 98
VPT++++G++ + +F GGE+ + R+ + K+ ++ +++ T L P +T
Sbjct: 273 VPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKDLLKVYKE--TRNGMLGPDYST 330
Query: 99 VLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMK 158
SP+L FGC+S R Y E+++ +L ++ WR+++ + N
Sbjct: 331 KFSPWLAFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHL 390
Query: 159 GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
G Q W ++K E+W KTGYP IDA M++L G++ + R V FL R D+
Sbjct: 391 GGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVR-DM 449
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMW 247
L W G FE LLD D N GNW +
Sbjct: 450 GLDWRMGAEWFETCLLDYDPCSNYGNWTY 478
>sp|Q38JU2|CRYD_SOLLC Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum
lycopersicum GN=CRYD PE=3 SV=2
Length = 577
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 99/208 (47%), Gaps = 3/208 (1%)
Query: 41 VPTMKEMGLDESSIPL-CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTV 99
VP + E+GL + + F GGE+ AL R+ K+ ++ +++ + ST
Sbjct: 281 VPQVSELGLQQEKVSKGMNFVGGESAALGRVHDYFWKKDLLKVYKETRNGMLGADYSTK- 339
Query: 100 LSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG 159
SP+L G LS R Y E+K+ +L ++ WR+++ + N G
Sbjct: 340 FSPWLASGSLSPRFIYEEVKRYEKERLSNDSTYWVLFELIWRDYFRFLSIKLANLLFQAG 399
Query: 160 NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLY 219
++W ++ +AW G+TGYP IDA M++L G++ + R V FL R D+
Sbjct: 400 GPQKVNINWSQDQTMFDAWRRGQTGYPLIDANMKELAATGYMSNRGRQIVCSFLVR-DMG 458
Query: 220 LSWEEGQSVFEELLLDADWAMNAGNWMW 247
+ W G FE LLD D N GNW +
Sbjct: 459 IDWRMGAEWFETCLLDYDPCSNYGNWTY 486
>sp|Q75WS4|CRYD_XENLA Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1
Length = 523
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 116/249 (46%), Gaps = 8/249 (3%)
Query: 2 TYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGL-DESSIPLCKFP 60
Y + +E+ K +P P L G+ +E VP+ ++ D + P FP
Sbjct: 159 VYTQFRKAVETQGKVRPTFQMPDKLKPLPSGL---EEGSVPSHEDFDQQDPLTDPRTAFP 215
Query: 61 --GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
GGE++AL+RLE V ++ L+ ST +P+L GC+S R Y ++
Sbjct: 216 CSGGESQALQRLEHYFWETNLVASYKDTRNGLIGLDYSTK-FAPWLALGCVSPRYIYEQI 274
Query: 119 KKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
K + ++ ++ WR+++ V + W + K +AW
Sbjct: 275 GKYEKERTANQSTYWVIFELLWRDYFRFVALKYGRRIFFLRGLQDKDIPWKRDPKLFDAW 334
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
G+TG PF+DA MR+L + G++ + R VA FLT+ DL + W G FE LL+D D
Sbjct: 335 KEGRTGVPFVDANMRELAMTGFMSNRGRQNVASFLTK-DLGIDWRMGAEWFEYLLVDYDV 393
Query: 239 AMNAGNWMW 247
N GNW++
Sbjct: 394 CSNYGNWLY 402
>sp|P77967|CRYD_SYNY3 Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=cry PE=1 SV=2
Length = 489
Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 4/217 (1%)
Query: 46 EMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLK 105
++ D S+ F GGET L RL+ + + ++ +++ + S+ SP+L
Sbjct: 201 QINFDHRSV--LAFQGGETAGLARLQDYFWHGDRLKDYKETRNGMVGADYSSK-FSPWLA 257
Query: 106 FGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQ 165
GCLS R Y E+K+ L+ ++ WR+F+ V N +G +
Sbjct: 258 LGCLSPRFIYQEVKRYEQERVSNDSTHWLIFELLWRDFFRFVAQKYGNKLFNRGGLLNKN 317
Query: 166 VDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEG 225
W ++ E W G+TGYP +DA MR+L L G++ + R VA FL + +L + W G
Sbjct: 318 FPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCK-NLGIDWRWG 376
Query: 226 QSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYS 262
FE L+D D N GNW + + + FR ++
Sbjct: 377 AEWFESCLIDYDVCSNWGNWNYTAGIGNDARDFRYFN 413
>sp|P27526|PHR_NEUCR Deoxyribodipyrimidine photo-lyase OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=phr-1 PE=3 SV=1
Length = 642
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 113/238 (47%), Gaps = 14/238 (5%)
Query: 41 VPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVL 100
P K + DE + +P GE EALKRLEK E + K+ + P T+ L
Sbjct: 339 APEGKRLRDDEKARYHSLWPAGEHEALKRLEKFC--DEAIGKYAERRNIPAMQ--GTSNL 394
Query: 101 SPYLKFGCLSVRLFYHELK-----KILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
S + G LS R + K L G + ++ WR+FY V P
Sbjct: 395 SVHFASGTLSARTAIRTARDRNNTKKLNGGNEGI--QRWISEVAWRDFYKHVLVHWPYVC 452
Query: 156 KMKGNK-ICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLT 214
K K ++W N + AW+ G+TG+P IDA MRQ+ G++H+ R VA FL
Sbjct: 453 MNKPFKPTYSNIEWSYNVDHFHAWTQGRTGFPIIDAAMRQVLSTGYMHNRLRMIVASFLA 512
Query: 215 RGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+ DL + W G+ F E L+D D+A N G W + ++ Q +FRV++P+ +K D
Sbjct: 513 K-DLLVDWRMGERYFMEHLIDGDFASNNGGWGFAASVGVDPQPYFRVFNPLLQSEKFD 569
>sp|Q3IPX9|CRYD_NATPD Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC
35678) GN=cry PE=3 SV=1
Length = 474
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 110/221 (49%), Gaps = 21/221 (9%)
Query: 41 VPTMKEMGLDE---SSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPS- 96
VPT++ +G+ E + +F GGE+ +R+E + + +R+++ T N L +
Sbjct: 187 VPTVESLGVSEPPTDDRAVLEFEGGESAGKRRVESYIWEGDHLREYK---TTRNGLLGAD 243
Query: 97 -TTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
++ SP+L GCLS R + E+++ + L+ ++ WR+F+ F+
Sbjct: 244 YSSKFSPWLAAGCLSPRWLHREVERYEDERVANEDTYWLVFELAWRDFFQF------QFE 297
Query: 156 KMK------GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAV 209
K G +DWD + E W+ G+TG PF+DA MR+L G++ + R V
Sbjct: 298 KYGATFFKPGGIRERNIDWDRDRALFERWADGETGVPFVDANMRELNRTGYMSNRGRQNV 357
Query: 210 ACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSA 250
A FL G L + W G + FE L+D D A N GNW + +
Sbjct: 358 ASFLA-GVLGIDWRWGAAYFEARLIDYDVASNWGNWAYQAG 397
>sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa
subsp. japonica GN=CRYD PE=2 SV=1
Length = 582
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 102/209 (48%), Gaps = 5/209 (2%)
Query: 41 VPTMKEMGLDESSIPL-CKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPS-TT 98
VPT++ +GL + F GGE+ AL R+ + K+ ++ +++ T L P +T
Sbjct: 291 VPTLESLGLSMTKAEKGMHFVGGESAALGRVHEYFWKKDQLKVYKE--TRNGMLGPDYST 348
Query: 99 VLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMK 158
SP+L G LS R E+K+ +L ++ WR+++ + + N
Sbjct: 349 KFSPWLASGSLSPRYICEEVKRYEKQRIANDSTYWVLFELIWRDYFRFISAKYGNSIFHL 408
Query: 159 GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL 218
G + W ++ E+W G+TGYP IDA M++L G++ + R V FL R D+
Sbjct: 409 GGPRNVESKWSQDQALFESWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVR-DM 467
Query: 219 YLSWEEGQSVFEELLLDADWAMNAGNWMW 247
+ W G FE LLD D A N GNW +
Sbjct: 468 GIDWRMGAEWFETCLLDYDPASNYGNWTY 496
>sp|Q7NMD1|CRYD_GLOVI Cryptochrome DASH OS=Gloeobacter violaceus (strain PCC 7421) GN=cry
PE=3 SV=1
Length = 500
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 111/236 (47%), Gaps = 9/236 (3%)
Query: 41 VPTMKEMGL-----DESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEP 95
+P + ++GL DE ++ +F GGET L RLE+ K ++ +++ +
Sbjct: 189 IPQLADLGLESPVTDERAV--LQFKGGETSGLARLEEYFWQKSLLKSYKQTRNGMLGADY 246
Query: 96 STTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFD 155
S+ S +L GCLS R + +++ L+ ++ WR+++ + + +
Sbjct: 247 SSK-FSAWLALGCLSARYIHEQVQTYETKRIKNDSTYWLIFELLWRDYFRFIAAKHGDRL 305
Query: 156 KMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
+ W + + E W G+TG+P +DA MR+L G++ + R VA FLT+
Sbjct: 306 FYTAGLRGLDIPWKEDWERFELWRTGQTGFPLVDANMRELAATGFMSNRGRQNVASFLTK 365
Query: 216 GDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
+L + W G FE L+D D A N GNW + + + FR ++ + + D
Sbjct: 366 -NLGIHWHMGAEWFESRLIDYDVASNWGNWNYTAGVGNDARGFRFFNILKQARDYD 420
>sp|Q5IFN2|CRYD_OSTTA Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus
tauri GN=Ot01g06320 PE=3 SV=1
Length = 546
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 109/244 (44%), Gaps = 25/244 (10%)
Query: 7 VSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEA 66
V E +PKP A + + +C + LDE S+ F GGE+ A
Sbjct: 204 VEGFEWMPKPSDLPFASSEIAMDCDKRIKD-----------CLDERSV--LDFKGGESNA 250
Query: 67 LKRLEKSL-ANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATG 125
L R++ L + FE N +T L+P+L GC+S R E+++ +
Sbjct: 251 LARVKYYLWESDRLATYFETRNGMLGG--DYSTKLAPWLALGCVSPRHVVSEIRRYESER 308
Query: 126 PHAKPPVSLLGQIYWREFYYVV----GSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHG 181
K ++ ++ WR+F+ G+ + D G + W +EK L+AW G
Sbjct: 309 VENKSTYWVIFELIWRDFFKFFALKHGNKIFHLDGTAGRR----ASWKRDEKILKAWKTG 364
Query: 182 KTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMN 241
TGYP IDA MR+L G++ + R VA +L D + W G FE LLD D A N
Sbjct: 365 TTGYPLIDANMRELAATGFMSNRGRQNVASWLAL-DAGIDWRHGADWFEHHLLDYDTASN 423
Query: 242 AGNW 245
GNW
Sbjct: 424 WGNW 427
>sp|P61497|PHR_THET8 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB8 / ATCC 27634 / DSM 579) GN=phr PE=1 SV=1
Length = 420
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 7/175 (4%)
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
+ LSPY G LS RL E ++ G + ++ WR+F Y + P +
Sbjct: 210 SRLSPYFALGVLSPRLAAWEAERRGGEGAR-----KWVAELLWRDFSYHLLYHFPWMAER 264
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ W +E +AW GKTG P +DA MR+L G++ + AR A F +
Sbjct: 265 PLDPRFQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVK-H 323
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
L L W+ + F LLLD D A+N W W +FRV++PV G++ D
Sbjct: 324 LLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHD 378
>sp|P61496|PHR_THET2 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB27 / ATCC BAA-163 / DSM 7039) GN=phr PE=1 SV=1
Length = 420
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 81/175 (46%), Gaps = 7/175 (4%)
Query: 98 TVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKM 157
+ LSPY G LS RL E ++ G + ++ WR+F Y + P +
Sbjct: 210 SRLSPYFALGVLSPRLAAWEAERRGGEGAR-----KWVAELLWRDFSYHLLYHFPWMAER 264
Query: 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGD 217
+ + W +E AW G+TG P +DA MR+L G++ + AR A F +
Sbjct: 265 PLDPRFQALPWQEDEALFRAWYEGRTGVPLVDAAMRELHATGFLSNRARMNAAQFAVK-H 323
Query: 218 LYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTD 271
L L W+ + F LLLD D A+N W W +FRV++PV G++ D
Sbjct: 324 LLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHD 378
>sp|P40115|CRY1_SINAL Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1
Length = 501
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 8/183 (4%)
Query: 96 STTVLSPYLKFGCLSVRLFYH--ELKKIL----ATGPHAKPPVSLLGQIYWREFYYVVGS 149
ST++LSPYL FG +SVR + +K+I+ G + L I R++ ++
Sbjct: 242 STSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGEGEESADLFLRGIGLRDYSRIICF 301
Query: 150 DTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAV 209
+ P + WD + +AW G+TGYP +DA MR+L GW+H+ R V
Sbjct: 302 NFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIV 361
Query: 210 ACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASA-FFHQFFRVYSPVAFGK 268
+ F + L L W+ G F + LLDAD + W ++S S H+ R+ +P G
Sbjct: 362 SSFAVKF-LLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDNPAIQGA 420
Query: 269 KTD 271
K D
Sbjct: 421 KYD 423
>sp|P05066|PHR_YEAST Deoxyribodipyrimidine photo-lyase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PHR1 PE=1
SV=1
Length = 565
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 21/222 (9%)
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLE-PSTTVLSPYLKFGCLSVRLFYHE--- 117
E AL RL+ L K K N + L T+ LS Y+ G +S RL ++
Sbjct: 307 SEEAALSRLKDFLGTKS-----SKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQ 361
Query: 118 ------LKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKI-CCQVDWDT 170
+ K L + + + ++ WR+FY + P ++ + W+
Sbjct: 362 SCNGQIMSKALKDNSSTQ---NFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWEN 418
Query: 171 NEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFE 230
N E W G TG P +DAIMR+L G+I++ +R A FL++ +L + W G+ F
Sbjct: 419 NPVAFEKWCTGNTGIPIVDAIMRKLLYTGYINNRSRMITASFLSK-NLLIDWRWGERWFM 477
Query: 231 ELLLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTD 271
+ L+D D + N G W + S++ Q +FRV++ KK D
Sbjct: 478 KHLIDGDSSSNVGGWGFCSSTGIDAQPYFRVFNMDIQAKKYD 519
>sp|Q96524|CRY2_ARATH Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2
Length = 612
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 91/183 (49%), Gaps = 8/183 (4%)
Query: 96 STTVLSPYLKFGCLSVRLFYH--ELKKIL-ATGPHAKPPVS---LLGQIYWREFYYVVGS 149
ST++LSPYL FG +SVR + +K+I+ A +++ S L I RE+ +
Sbjct: 243 STSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICF 302
Query: 150 DTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAV 209
+ P + WD + +AW G+TGYP +DA MR+L GW+H+ R V
Sbjct: 303 NFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIV 362
Query: 210 ACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASA-FFHQFFRVYSPVAFGK 268
+ F + L L W+ G F + LLDAD + W ++S S H+ R+ +P G
Sbjct: 363 SSFAVKF-LLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGA 421
Query: 269 KTD 271
K D
Sbjct: 422 KYD 424
>sp|Q87JP5|CRYD_VIBPA Cryptochrome DASH OS=Vibrio parahaemolyticus serotype O3:K6 (strain
RIMD 2210633) GN=cry PE=3 SV=1
Length = 445
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 108/250 (43%), Gaps = 16/250 (6%)
Query: 2 TYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPG 61
T+ + +E + P D AP+ LP +G +PT+ DES++ F G
Sbjct: 153 TFTQFRKCVEGIDIAHPID-APSRLPPMPKGAQ------LPTLSSFYFDESAL----FSG 201
Query: 62 GETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKI 121
GE L + + +++ + + ST SP+L GC+S R+ + LK+
Sbjct: 202 GEWSGLAHCRRYFFSG-LASSYKETRNGLDGMAYSTK-FSPWLALGCVSPRMIHAMLKQY 259
Query: 122 LATGPHAKPPVSLLGQIYWRE-FYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSH 180
T + ++ WRE FY+ + G + + ++ + W +
Sbjct: 260 EQTQGANDSTYWIYFELLWREYFYWYARCYQQRLFRFGGIRNQPPLTSFYAHRF-QQWKN 318
Query: 181 GKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAM 240
G T YP ++A M QL G++ + R VA L +L L W G + FE L+D D
Sbjct: 319 GTTPYPIVNACMHQLNHTGYMSNRGRQLVASCLVH-ELGLDWRYGAAYFETQLIDYDVGS 377
Query: 241 NAGNWMWLSA 250
N GNW +L+
Sbjct: 378 NWGNWQYLAG 387
>sp|Q5QXE0|CRYD_IDILO Cryptochrome DASH OS=Idiomarina loihiensis (strain ATCC BAA-735 /
DSM 15497 / L2-TR) GN=cry PE=3 SV=1
Length = 449
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 115/253 (45%), Gaps = 25/253 (9%)
Query: 3 YQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGG 62
++K V L +P + P SLP+ I +P T+ E+ D+ F GG
Sbjct: 167 FRKKVEPLSRNFSVQPVNALP-SLPK---NISYPG-FKAETLNELASDD-------FEGG 214
Query: 63 ETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKIL 122
E AL L S + E +++ A + S+T SP+L GCLSVR L+
Sbjct: 215 ERAALTHL-TSYFSGESAGTYKQTRNALDDFS-SSTKFSPWLAQGCLSVRQIMAALRAYE 272
Query: 123 ATGPHAKPPVSLLGQIYWRE--FYYVV--GSDTPNFDKMKGNKICCQVDWDTNEKYLEAW 178
+ + ++ WRE F+Y + G F + G +E++ + W
Sbjct: 273 TEFGENESSYWISFELLWREYFFWYALKHGKRLFAFSGLSGKSPKTSF---YSERF-QKW 328
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVA-CFLTRGDLYLSWEEGQSVFEELLLDAD 237
G T YP ++A M+QL G++ + R VA CF+ +L L W G + FE+ L+D D
Sbjct: 329 CSGNTPYPIVNACMKQLNATGYMSNRGRQLVASCFVH--ELSLDWRYGAAYFEQQLIDYD 386
Query: 238 WAMNAGNWMWLSA 250
+ N GNW +L+
Sbjct: 387 VSSNWGNWQYLAG 399
>sp|Q43125|CRY1_ARATH Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2
Length = 681
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 8/183 (4%)
Query: 96 STTVLSPYLKFGCLSVRLFYH--ELKKIL---ATGPHAKPPVSL-LGQIYWREFYYVVGS 149
+T+ LSP+L FG +SVR +H +K++ + V+L L I RE+ +
Sbjct: 246 TTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISF 305
Query: 150 DTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAV 209
+ P + W +E Y +AW G+TGYP +DA MR+L GW+H R V
Sbjct: 306 NHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 365
Query: 210 ACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSAS-AFFHQFFRVYSPVAFGK 268
+ F + L L W G F + LLDAD +A W +++ + +F R+ +P G
Sbjct: 366 SSFFVK-VLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGY 424
Query: 269 KTD 271
K D
Sbjct: 425 KFD 427
>sp|Q9KR33|CRYD_VIBCH Cryptochrome DASH OS=Vibrio cholerae serotype O1 (strain ATCC 39315
/ El Tor Inaba N16961) GN=cry1 PE=1 SV=1
Length = 461
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 90/196 (45%), Gaps = 11/196 (5%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
F GGE L + ++ ++++ + ++ ST SP+L G +S + Y L
Sbjct: 199 FVGGEQAGLTHCQNYFSSL-LPSRYKETRNGLDGMDYSTK-FSPWLALGAVSPKTIYAML 256
Query: 119 KKILATGPHAKPPVSLLGQIYWREFYY----VVGSDTPNFDKMKGNKICCQVDWDTNEKY 174
++ A + ++ WRE++Y G+ F + K +++
Sbjct: 257 QRYEAVHGANDSTYWIFFELLWREYFYWYARRYGAKLFRFSGIGEKKPLTSF---YAQRF 313
Query: 175 LEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL 234
L+ W HG+T +P ++A MRQL G++ + R VA L +L L W G + FE L+
Sbjct: 314 LQ-WKHGETPFPIVNACMRQLNQTGYMSNRGRQLVASCLVH-ELGLDWRYGAAYFETQLV 371
Query: 235 DADWAMNAGNWMWLSA 250
D D N GNW +L+
Sbjct: 372 DYDVGSNWGNWQYLAG 387
>sp|Q9KS67|CRY2_VIBCH Cryptochrome-like protein cry2 OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=cry2 PE=1
SV=1
Length = 504
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 90/214 (42%), Gaps = 7/214 (3%)
Query: 61 GGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKK 120
GG A LE A + R++ + ++P+ + + +SPYL +G +S+R Y L K
Sbjct: 193 GGSDMAWATLEDFFARRG--REYYRSISSPSLARHACSRMSPYLAWGNISLREMYQTLLK 250
Query: 121 ILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKI---CCQVDWDTNEKYLEA 177
+ + ++L +++W + + N+ Q D L A
Sbjct: 251 HWSVAGFRRSLIALSSRLHWHCHFIQKFESECEMEFRCVNRAYDSLLQQSSDAPAAQLAA 310
Query: 178 WSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237
W G TG P +DA MR L G+++ R + LT + + W G + +L LD +
Sbjct: 311 WQTGHTGIPLVDACMRCLIQTGYLNFRMRAMLVSVLTH-HMNVDWRAGVTYLAQLFLDFE 369
Query: 238 WAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTD 271
++ + + A R+Y+P ++ D
Sbjct: 370 PGIHYPQFQ-MQAGVTGTNTIRIYNPTKQAQEHD 402
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,220,601
Number of Sequences: 539616
Number of extensions: 5960252
Number of successful extensions: 11554
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 11350
Number of HSP's gapped (non-prelim): 108
length of query: 315
length of database: 191,569,459
effective HSP length: 117
effective length of query: 198
effective length of database: 128,434,387
effective search space: 25430008626
effective search space used: 25430008626
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)