Query psy11420
Match_columns 315
No_of_seqs 217 out of 1759
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 17:58:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fy4_A 6-4 photolyase; DNA rep 100.0 2.5E-74 8.6E-79 572.6 27.0 285 1-287 159-447 (537)
2 3tvs_A Cryptochrome-1; circadi 100.0 4.9E-74 1.7E-78 571.3 27.4 285 2-287 156-462 (538)
3 2wq7_A RE11660P; lyase-DNA com 100.0 2.3E-74 7.9E-79 575.7 23.8 285 1-287 180-471 (543)
4 1np7_A DNA photolyase; protein 100.0 2.3E-73 8E-78 562.6 27.8 281 1-287 155-437 (489)
5 1owl_A Photolyase, deoxyribodi 100.0 1.2E-72 4.2E-77 556.5 25.5 277 1-287 147-431 (484)
6 1u3d_A Cryptochrome 1 apoprote 100.0 5E-73 1.7E-77 562.6 22.1 273 1-287 156-442 (509)
7 1dnp_A DNA photolyase; DNA rep 100.0 2.1E-72 7.2E-77 552.9 23.7 272 1-287 148-424 (471)
8 2j4d_A Cryptochrome 3, cryptoc 100.0 1.7E-71 5.7E-76 553.1 24.5 279 1-287 192-473 (525)
9 2j07_A Deoxyribodipyrimidine p 100.0 1.9E-71 6.5E-76 539.1 23.7 259 1-287 134-393 (420)
10 2e0i_A 432AA long hypothetical 100.0 9E-71 3.1E-75 536.4 21.6 250 2-287 139-390 (440)
11 2xry_A Deoxyribodipyrimidine p 100.0 8.3E-59 2.8E-63 458.0 11.6 210 58-282 247-480 (482)
12 3umv_A Deoxyribodipyrimidine p 100.0 7.1E-58 2.4E-62 451.9 9.2 214 58-288 241-489 (506)
13 3zxs_A Cryptochrome B, rscryb; 100.0 6.6E-53 2.3E-57 413.0 8.8 200 56-279 234-443 (522)
14 1u3d_A Cryptochrome 1 apoprote 99.4 8.3E-15 2.8E-19 145.0 -4.8 92 221-315 333-428 (509)
15 3fy4_A 6-4 photolyase; DNA rep 99.3 2E-14 6.8E-19 142.7 -5.0 92 221-315 338-433 (537)
16 1np7_A DNA photolyase; protein 99.3 2E-14 6.9E-19 141.5 -5.3 92 221-315 329-423 (489)
17 3tvs_A Cryptochrome-1; circadi 99.3 2.9E-14 1E-18 141.7 -5.9 92 221-315 351-448 (538)
18 2j4d_A Cryptochrome 3, cryptoc 99.3 5.5E-14 1.9E-18 139.5 -5.7 92 221-315 365-459 (525)
19 1dnp_A DNA photolyase; DNA rep 99.3 1.1E-13 3.7E-18 135.7 -4.4 92 221-315 315-410 (471)
20 2e0i_A 432AA long hypothetical 99.2 1.3E-13 4.3E-18 134.0 -4.7 91 221-315 283-376 (440)
21 2wq7_A RE11660P; lyase-DNA com 99.2 1.5E-13 5.3E-18 136.8 -4.5 93 220-315 361-457 (543)
22 2j07_A Deoxyribodipyrimidine p 99.2 2.3E-13 7.8E-18 131.6 -5.2 93 220-315 283-379 (420)
23 1owl_A Photolyase, deoxyribodi 99.2 3.4E-13 1.2E-17 132.6 -4.8 91 221-315 323-417 (484)
24 2xry_A Deoxyribodipyrimidine p 98.8 3.2E-11 1.1E-15 118.5 -7.7 92 218-315 364-472 (482)
25 3umv_A Deoxyribodipyrimidine p 98.7 1.1E-10 3.9E-15 115.0 -8.1 90 220-315 366-472 (506)
26 3zxs_A Cryptochrome B, rscryb; 96.1 0.00023 7.7E-09 69.9 -4.6 77 222-301 351-435 (522)
27 3lgb_A DNA primase large subun 40.3 47 0.0016 28.0 5.5 64 185-250 19-86 (194)
No 1
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=2.5e-74 Score=572.57 Aligned_cols=285 Identities=52% Similarity=0.956 Sum_probs=242.3
Q ss_pred CChHhHHHHHhcCCCCCCC-CCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCCC-CCCCCCccHHHHHHHHHHHHhcCc
Q psy11420 1 MTYQKLVSVLESLPKPKPA-DDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSI-PLCKFPGGETEALKRLEKSLANKE 78 (315)
Q Consensus 1 ~tf~~F~~~~~~~~~p~~P-l~~P~~l~~~~~p~~~~~~~~ip~l~~lg~~~~~~-~~~~~~gGe~~A~~~L~~Fl~~~~ 78 (315)
.|||+|++++++...++.| .+.|..++..+. ........+|++++||+..... ....|+|||++|+++|+.||+++.
T Consensus 159 ~vftpf~k~~~~~~~~~~p~~~~p~~~~~~~~-~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~ 237 (537)
T 3fy4_A 159 LSYQSFLKVAGEPSCAKSELVMSYSSLPPIGD-IGNLGISEVPSLEELGYKDDEQADWTPFRGGESEALKRLTKSISDKA 237 (537)
T ss_dssp SSHHHHHHHHCCCTTTTCCCCCCCSCCCCCCC-CCSSCCCCCCCTTTTTCCGGGSSCCCSCCCSHHHHHHHHHHHTCCHH
T ss_pred CccCHHHHHHHhhcCCcCCCCCccccCCCccc-ccccccccCCcHHhcCCCcccccccCCCCccHHHHHHHHHHHHhCch
Confidence 4899999999987543444 344444543211 1112345688888998764321 123599999999999999998743
Q ss_pred ccccccccCCCCCC-CCCCCCCCchhhhcCCCCHHHHHHHHHHHHhcC-CCCCChHhHHHhHHHHHHHHHHhhcCCCccc
Q psy11420 79 WVRKFEKPNTAPNS-LEPSTTVLSPYLKFGCLSVRLFYHELKKILATG-PHAKPPVSLLGQIYWREFYYVVGSDTPNFDK 156 (315)
Q Consensus 79 ~~~~Y~~~r~~~~~-~~~~~S~LSpyL~~G~lS~r~v~~~~~~~~~~~-~~~~~~~~~~~eL~WRef~~~~~~~~p~~~~ 156 (315)
++..|++.|+.|+. ...+||+|||||++||||||+|++++.+...+. ....+.++|++||+|||||+++++++|++..
T Consensus 238 ~l~~Y~~~rd~p~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~ 317 (537)
T 3fy4_A 238 WVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYKDVKKHTSPPVSLLGQLLWREFFYTTAFGTPNFDK 317 (537)
T ss_dssp HHHTCCGGGCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHHHHHHHTTSCCCCTTTSHHHHHHHHHHHHHHHHTCTTTTS
T ss_pred HHhhhcccccCccccCCCCCccCCHHHhCCCcCHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHCcchhc
Confidence 48899999998863 247999999999999999999999998865432 2345678999999999999999999999998
Q ss_pred ccCCccccCCCCCCChHHHHHHHcCCCCChHHHHHHHHHHHhcccCchhHHHHHHHhhhhccCCChHHHHHHHHhhhcch
Q psy11420 157 MKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236 (315)
Q Consensus 157 ~~~~~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~R~~vasfl~~~~l~~~W~~G~~~f~~~liD~ 236 (315)
.++++.+..++|+.|++.|++|++|+||+|||||+||||++|||||||+||||||||||++|+|||+.|++||+++||||
T Consensus 318 ~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~vDA~MrqL~~tG~mHnr~Rm~vAsfl~k~~L~idWr~G~~~F~~~liD~ 397 (537)
T 3fy4_A 318 MKGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDS 397 (537)
T ss_dssp STTCTTSCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCBCHHHHHHHHHHHCTTC
T ss_pred ccCChhhhcCCchhhhHHHHHHHcCCCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHcccc
Confidence 88899999999999999999999999999999999999999999999999999999994489999999999999999999
Q ss_pred hhhhhhhhHhhhhccccccccccccCHHHHHHhcCcccchhhhhhhcccCC
Q psy11420 237 DWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLLDADWAMNAGN 287 (315)
Q Consensus 237 d~a~n~~~W~~~ag~g~~~~~~r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~ 287 (315)
|+++|++||||+||+|++..|+|||||++|+++|||+|+|||+ |+|++..
T Consensus 398 D~a~n~g~Wqw~ag~g~d~~~fRifNP~~Q~~kfDp~G~yIr~-wvPEL~~ 447 (537)
T 3fy4_A 398 DWAINNGNWMWLSCSSFFYQFNRIYSPISFGKKYDPDGKYIRH-FLPVLKD 447 (537)
T ss_dssp CHHHHHHHHHHHTTSSSCCCTTCCCCTTTTGGGTCTTCHHHHH-HCGGGTT
T ss_pred ccccChHhhhhhcccCCCcccccccCHHHHHHHhCCCchHHHH-hCHhhcC
Confidence 9999999999999999977799999999999999999999997 9998765
No 2
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=100.00 E-value=4.9e-74 Score=571.34 Aligned_cols=285 Identities=36% Similarity=0.656 Sum_probs=242.4
Q ss_pred ChHhHHHHHhcCCCCCCCCCCCCC--CCCCcCCCCC--CC--CCCCCCcccCCCCCCCC---CCCCCCccHHHHHHHHHH
Q psy11420 2 TYQKLVSVLESLPKPKPADDAPTS--LPRECQGILH--PD--EHLVPTMKEMGLDESSI---PLCKFPGGETEALKRLEK 72 (315)
Q Consensus 2 tf~~F~~~~~~~~~p~~Pl~~P~~--l~~~~~p~~~--~~--~~~ip~l~~lg~~~~~~---~~~~~~gGe~~A~~~L~~ 72 (315)
||++|+++++++..|+.|+++|.. +..+..|... .. ...+|+++++|+.+... ....|+|||++|+++|++
T Consensus 156 ~f~~f~~~~~~~~~~~~p~~~p~~~~~~~~~~p~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~~~Ge~~A~~~L~~ 235 (538)
T 3tvs_A 156 TYQMFLHTVQIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDE 235 (538)
T ss_dssp SHHHHHHHHTTTTCSSCCCCCCCCCCCCCCCCCTTTTTTSCCBSSCCCTTTTSCCCCCSSCCCCCCCCCCHHHHHHHHHH
T ss_pred chHHHHHHHHhhCCCCCCCCCccccccccccCCcccccccccccCCCCHHHcCCCcccccccccCCCCCCHHHHHHHHHH
Confidence 799999999998877777877753 3322222100 01 14578899998865432 235699999999999999
Q ss_pred HHhc--CcccccccccCCCCCCCCCCCCCCchhhhcCCCCHHHHHHHHHHHHhcCC--------CCCChHhHHHhHHHHH
Q psy11420 73 SLAN--KEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGP--------HAKPPVSLLGQIYWRE 142 (315)
Q Consensus 73 Fl~~--~~~~~~Y~~~r~~~~~~~~~~S~LSpyL~~G~lS~r~v~~~~~~~~~~~~--------~~~~~~~~~~eL~WRe 142 (315)
|+++ +.++..|.+.++.+....++||+|||||++||||||+|++++.+...... ...+.++|++||+|||
T Consensus 236 Fl~~~~~~~l~~y~~~r~~~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~eL~WRe 315 (538)
T 3tvs_A 236 RLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFKNVQLRACVRGVQMTGGAHITGQLIWRE 315 (538)
T ss_dssp HHHHHHHHHHSCCCCTTTTSCCSSCCSCCCHHHHHTTSSCHHHHHHHHHHHTCSSSCCCCCSSSCCTTTTTTHHHHHHHH
T ss_pred HHHhhhhhhHhhhcccccCcccccCCCcCCCHHHhCCCcCHHHHHHHHHHHHhhhcccccccccccchHHHHHHHHHHHH
Confidence 9943 23478999998887644579999999999999999999999987654311 1134579999999999
Q ss_pred HHHHHhhcCCCcccccCCccccCCCCCC-ChHHHHHHHcCCCCChHHHHHHHHHHHhcccCchhHHHHHHHhhhhccCCC
Q psy11420 143 FYYVVGSDTPNFDKMKGNKICCQVDWDT-NEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLS 221 (315)
Q Consensus 143 f~~~~~~~~p~~~~~~~~~~~~~~~w~~-~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~R~~vasfl~~~~l~~~ 221 (315)
||+++++++|++...++++.+..++|+. |++.|++|++|+||+|||||+||||++|||||||+||||||||||++|+||
T Consensus 316 f~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~~aW~~G~TG~P~VDA~MrqL~~tG~mHnr~Rm~vAsfl~k~~L~id 395 (538)
T 3tvs_A 316 YFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQS 395 (538)
T ss_dssp HHHHHHHHSSCTTSSSSCSSCCCCCCCCCCSSHHHHHHTTCSSCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTTTTCCC
T ss_pred HHHHHHHhCcchhhccCChhhhcCCccccCHHHHHHHHhCCCCCHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhhhCCC
Confidence 9999999999999888999999999988 888999999999999999999999999999999999999999996589999
Q ss_pred hHHHHHHHHhhhcchhhhhhhhhHhhhhcccc--ccccccccCHHHHHHhcCcccchhhhhhhcccCC
Q psy11420 222 WEEGQSVFEELLLDADWAMNAGNWMWLSASAF--FHQFFRVYSPVAFGKKTDKFELLLDADWAMNAGN 287 (315)
Q Consensus 222 W~~G~~~f~~~liD~d~a~n~~~W~~~ag~g~--~~~~~r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~ 287 (315)
|+.|++||+++|||||+++|+|||||+||+|+ ..+|||||||++|++||||+|+|||+ |+|++..
T Consensus 396 Wr~G~~~F~~~llD~D~a~n~g~Wqw~ag~g~Dd~~pyfRifNP~~Q~~kfDp~G~YIrr-wvPEL~~ 462 (538)
T 3tvs_A 396 WEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQ-YVPELMN 462 (538)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHSCCCSSCCCTHHHHCSTTTHHHHSCTTCTTGGG-TCGGGSS
T ss_pred chHHHHHHHHHcccCchhhchhhhhhhhcCCCcCCCCceeeeCHHHHHHHhCCCcchHHH-hChhhcC
Confidence 99999999999999999999999999999998 37999999999999999999999997 9998765
No 3
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=100.00 E-value=2.3e-74 Score=575.68 Aligned_cols=285 Identities=62% Similarity=1.083 Sum_probs=244.4
Q ss_pred CChHhHHHHHhcCCCCCCCCCCCCCCCCCcCCCC------CCCCCCCCCcccCCCCCCCCCCCCCCccHHHHHHHHHHHH
Q psy11420 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGIL------HPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSL 74 (315)
Q Consensus 1 ~tf~~F~~~~~~~~~p~~Pl~~P~~l~~~~~p~~------~~~~~~ip~l~~lg~~~~~~~~~~~~gGe~~A~~~L~~Fl 74 (315)
.|||+|+++++++..+. |++.|..++.+..|.. ......+|++++++++........|+|||++|+++|+.||
T Consensus 180 ~vft~F~~~~~~~~~~~-p~~~p~~~~~~~~p~~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~Ge~~A~~~L~~Fl 258 (543)
T 2wq7_A 180 ITYQKFLGIVEQLKVPK-VLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRPEELGPNKFPGGETEALRRMEESL 258 (543)
T ss_dssp CSHHHHHHHHTTSCCCC-CCCCCCCCSSCCCCCCCHHHHHCTTTTSCCCHHHHCSCGGGCCCCCSCCSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCCC-CCCcchhccccccccccccccccccccCCCCHHHcCCCccccccCCCCCCHHHHHHHHHHHH
Confidence 48999999998875544 7777755544212210 0011457788888876443223469999999999999999
Q ss_pred hcCcccccccccCCCCCCCCCCCCCCchhhhcCCCCHHHHHHHHHHHHhcC-CCCCChHhHHHhHHHHHHHHHHhhcCCC
Q psy11420 75 ANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATG-PHAKPPVSLLGQIYWREFYYVVGSDTPN 153 (315)
Q Consensus 75 ~~~~~~~~Y~~~r~~~~~~~~~~S~LSpyL~~G~lS~r~v~~~~~~~~~~~-~~~~~~~~~~~eL~WRef~~~~~~~~p~ 153 (315)
+++..+.+|++.|+.|....++||+|||||+|||||||+|++++.+...+. ...++.++|++||+|||||+++++++|+
T Consensus 259 ~~~~~l~~Y~~~Rd~p~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~~~~~~~~~f~~eL~WREf~~~~~~~~P~ 338 (543)
T 2wq7_A 259 KDEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKEIIKRQPKHSQPPVSLIGQLMWREFYYTVAAAEPN 338 (543)
T ss_dssp TCHHHHHHCCGGGSCSSCSSCSSCCCHHHHHHTSSCHHHHHHHHHHHHHHCSSCCCTTTSHHHHHHHHHHHHHHHHTCTT
T ss_pred hCChhhhhhcccccCccccccCCCCcCHhHhCCCCCHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHhCCc
Confidence 874338999999999864348999999999999999999999998754432 2245678999999999999999999999
Q ss_pred cccccCCccccCCCCCCChHHHHHHHcCCCCChHHHHHHHHHHHhcccCchhHHHHHHHhhhhccCCChHHHHHHHHhhh
Q psy11420 154 FDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELL 233 (315)
Q Consensus 154 ~~~~~~~~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~R~~vasfl~~~~l~~~W~~G~~~f~~~l 233 (315)
+...++++.+.+++|+.+++.|++|++|+||+||||||||||++|||||||+|||||||||||+|+|||+.|++||+++|
T Consensus 339 ~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vASFL~kg~L~idWr~G~~~F~~~L 418 (543)
T 2wq7_A 339 FDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVFEQLL 418 (543)
T ss_dssp TTSSTTCTTCCCCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHC
T ss_pred cccccCChHhhcCCCccCHHHHHHHHcCCCCCHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhCCCCchHHHHHHHHh
Confidence 99888999999999999999999999999999999999999999999999999999999998799999999999999999
Q ss_pred cchhhhhhhhhHhhhhccccccccccccCHHHHHHhcCcccchhhhhhhcccCC
Q psy11420 234 LDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLLDADWAMNAGN 287 (315)
Q Consensus 234 iD~d~a~n~~~W~~~ag~g~~~~~~r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~ 287 (315)
||||+++|+|||||++|+|++..|+|+|||++|++||||+|+|||+ |+|++.+
T Consensus 419 iD~D~a~n~g~Wqw~aG~g~D~~~~RifNP~~q~~kfDp~g~yIr~-wvPEL~~ 471 (543)
T 2wq7_A 419 LDQDWALNAGNWMWLSASAFFHQYFRVYSPVAFGKKTDPQGHYIRK-YVPELSK 471 (543)
T ss_dssp TTCCHHHHHHHHHHHTTSSSCCCTTCCCCTTTGGGGTCTTCHHHHH-HSGGGTT
T ss_pred ccCCcccCHHHHHHHhcCCCcCccccccCHHHHhhhcCCCchhHHH-hCHHhhc
Confidence 9999999999999999999977799999999999999999999997 9998765
No 4
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=2.3e-73 Score=562.59 Aligned_cols=281 Identities=26% Similarity=0.419 Sum_probs=237.1
Q ss_pred CChHhHHHHHh-cCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCC-CCCCCCCccHHHHHHHHHHHHhcCc
Q psy11420 1 MTYQKLVSVLE-SLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESS-IPLCKFPGGETEALKRLEKSLANKE 78 (315)
Q Consensus 1 ~tf~~F~~~~~-~~~~p~~Pl~~P~~l~~~~~p~~~~~~~~ip~l~~lg~~~~~-~~~~~~~gGe~~A~~~L~~Fl~~~~ 78 (315)
.+||+|+++++ +...++.|++.|..+++.+.. .....+|+++++++.... .....|+|||++|+++|+.||....
T Consensus 155 ~vft~F~~~~~~~~~~~~~p~~~p~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~ 231 (489)
T 1np7_A 155 DLFTKFRKDIEKKKISIRPCFFAPSQLLPSPNI---KLELTAPPPEFFPQINFDHRSVLAFQGGETAGLARLQDYFWHGD 231 (489)
T ss_dssp SSHHHHHHHHHTTTCCCCCCCCCCSCCCCCCCC---CCCCCCCCGGGSCCCCCCTTSSCCCCCSHHHHHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHhccCCCCCCCCcccccCcccc---ccccCCCCHhhcCCCCcCccccCCCCCcHHHHHHHHHHHHhcch
Confidence 37999999998 654445677777665442111 122457888888875422 1123599999999999999994222
Q ss_pred ccccccccCCCCCCCCCCCCCCchhhhcCCCCHHHHHHHHHHHHhcCCCCCChHhHHHhHHHHHHHHHHhhcCCCccccc
Q psy11420 79 WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMK 158 (315)
Q Consensus 79 ~~~~Y~~~r~~~~~~~~~~S~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~~~~eL~WRef~~~~~~~~p~~~~~~ 158 (315)
.+..|++.|+.+.. .++||+|||||++||||||+|++++.+........++.++|++||+|||||++++.++|++...+
T Consensus 232 ~l~~Y~~~Rd~~~~-~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~~ 310 (489)
T 1np7_A 232 RLKDYKETRNGMVG-ADYSSKFSPWLALGCLSPRFIYQEVKRYEQERVSNDSTHWLIFELLWRDFFRFVAQKYGNKLFNR 310 (489)
T ss_dssp CGGGHHHHTTCCSS-STTSCCCHHHHHTTSSCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHGGGGGST
T ss_pred hHhhhhhcccCCcc-ccCCcCcChhhcCCCCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHCcchhhhh
Confidence 48999999987753 67999999999999999999999998743322233456789999999999999999999987667
Q ss_pred CCccccCCCCCCChHHHHHHHcCCCCChHHHHHHHHHHHhcccCchhHHHHHHHhhhhccCCChHHHHHHHHhhhcchhh
Q psy11420 159 GNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238 (315)
Q Consensus 159 ~~~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~R~~vasfl~~~~l~~~W~~G~~~f~~~liD~d~ 238 (315)
.+..+..++|+.+++.|++|++|+||+||||||||||++|||||||+|||||||||| +|+|||+.|++||+++|||||+
T Consensus 311 ~~~~~~~~~W~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k-~L~idWr~G~~~F~~~LiD~D~ 389 (489)
T 1np7_A 311 GGLLNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCK-NLGIDWRWGAEWFESCLIDYDV 389 (489)
T ss_dssp TTTTTCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TTCBCHHHHHHHHHHHCTTCCH
T ss_pred cCcccccCCCccCHHHHHHHHcCCCCChhHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hcCCCChhHHHHHHHHhcccCh
Confidence 766778889999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred hhhhhhHhhhhccccccccccccCHHHHHHhcCcccchhhhhhhcccCC
Q psy11420 239 AMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLLDADWAMNAGN 287 (315)
Q Consensus 239 a~n~~~W~~~ag~g~~~~~~r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~ 287 (315)
++|+|||||+||+|++..|+|+|||++|++||||+|+|||+ |+|+...
T Consensus 390 a~N~g~wqw~ag~g~d~~~~RifNp~~q~~kfDp~g~yIr~-wvPeL~~ 437 (489)
T 1np7_A 390 CSNWGNWNYTAGIGNDARDFRYFNIPKQSQQYDPQGTYLRH-WLPELKN 437 (489)
T ss_dssp HHHHHHHHHHHTSSCCTTSCCCCCHHHHHHHHSTTSHHHHH-HCGGGTT
T ss_pred hcChHhhhhhhccCCCcccccccCHHHHhhhcCCCCccHHH-hCHHhhc
Confidence 99999999999999876689999999999999999999997 9998755
No 5
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=100.00 E-value=1.2e-72 Score=556.55 Aligned_cols=277 Identities=29% Similarity=0.507 Sum_probs=236.1
Q ss_pred CChHhHHHHHhcCCCCCCCCCCCCCCCCCcCCC----CCCCCCCCCCcccCCCCCCCCCCCCCCccHHHHHHHHHHHHhc
Q psy11420 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGI----LHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLAN 76 (315)
Q Consensus 1 ~tf~~F~~~~~~~~~p~~Pl~~P~~l~~~~~p~----~~~~~~~ip~l~~lg~~~~~~~~~~~~gGe~~A~~~L~~Fl~~ 76 (315)
.+||+|++++++... +.|++.|..++....+. .......+|+++.|++..... . .|+|||++|+++|+.|+++
T Consensus 147 ~vft~f~~~~~~~~~-~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~Ge~~A~~~L~~Fl~~ 223 (484)
T 1owl_A 147 SVYGPFWKNWQAQPK-PTPVATPTELVDLSPEQLTAIAPLLLSELPTLKQLGFDWDGG-F-PVEPGETAAIARLQEFCDR 223 (484)
T ss_dssp SSHHHHHHHHHHSCC-CCCCCCCCSCCCCCHHHHHHHGGGCCSSCCCTGGGTCCCCSC-C-SSCSSHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHhcC-CCCCCCccccccccccccccccccccCCCCCHHHcCCCcccc-C-cCCCCHHHHHHHHHHHHHH
Confidence 379999999987644 45677776554321100 000023477777777654332 3 6999999999999999988
Q ss_pred CcccccccccCCCCCCCCCCCCCCchhhhcCCCCHHHHHHHHHHHHhcCC---CCCChHhHHHhHHHHHHHHHHhhcCCC
Q psy11420 77 KEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGP---HAKPPVSLLGQIYWREFYYVVGSDTPN 153 (315)
Q Consensus 77 ~~~~~~Y~~~r~~~~~~~~~~S~LSpyL~~G~lS~r~v~~~~~~~~~~~~---~~~~~~~~~~eL~WRef~~~~~~~~p~ 153 (315)
+ +..|++.|+.|. .++||+|||||++||||||+|++++.+...... ..++.+.|++||+|||||+++++++|+
T Consensus 224 ~--l~~Y~~~rd~p~--~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~~~~~~~~~~~~~fl~eL~WREf~~~~~~~~P~ 299 (484)
T 1owl_A 224 A--IADYDPQRNFPA--EAGTSGLSPALKFGAIGIRQAWQAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPS 299 (484)
T ss_dssp G--GGGHHHHTTCTT--SCCSCCCHHHHHTTSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred H--HHHhccccCCCC--ccCCcCccHhHcCCCcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHhCCc
Confidence 5 899999999876 789999999999999999999999987643110 123567899999999999999999999
Q ss_pred cccccCCccccCCCCCCChHHHHHHHcCCCCChHHHHHHHHHHHhcccCchhHHHHHHHhhhhccCCChHHHHHHHHhhh
Q psy11420 154 FDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELL 233 (315)
Q Consensus 154 ~~~~~~~~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~R~~vasfl~~~~l~~~W~~G~~~f~~~l 233 (315)
+...++++.+..++|+.|++.|++|++|+||+||||||||||++|||||||+|||||||||| +|+|||+.|++||+++|
T Consensus 300 ~~~~~~~~~~~~l~w~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k-~L~idWr~g~~~F~~~l 378 (484)
T 1owl_A 300 LADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTK-DLIIDWRRGEQFFMQHL 378 (484)
T ss_dssp GGGSCCSTGGGGCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TSCCCTHHHHHHHHTTC
T ss_pred cccccCChhhhcCCCcCCHHHHHHHHcCCCCChhHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCCCCcHHHHHHHHhc
Confidence 99888888899999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cchhhhhhhhhHhhhhccccc-cccccccCHHHHHHhcCcccchhhhhhhcccCC
Q psy11420 234 LDADWAMNAGNWMWLSASAFF-HQFFRVYSPVAFGKKTDKFELLLDADWAMNAGN 287 (315)
Q Consensus 234 iD~d~a~n~~~W~~~ag~g~~-~~~~r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~ 287 (315)
||||+++|+|||||++|+|++ .+ ||+|||++|++||||+|+|||+ |+|+...
T Consensus 379 lD~d~a~n~g~wqw~ag~G~d~~p-fRifNp~~q~~kfDp~g~yIr~-wvPeL~~ 431 (484)
T 1owl_A 379 VDGDLAANNGGWQWSASSGMDPKP-LRIFNPASQAKKFDATATYIKR-WLPELRH 431 (484)
T ss_dssp TTCCHHHHHHHHHHTTTCSSSCCC-CCCCCHHHHHHHHSTTCHHHHH-HCGGGTT
T ss_pred ccCCcccCHHHHHHhhCcCCCCCc-cceeCHHHHhhhcCCCchhHHH-hChhhhc
Confidence 999999999999999999984 56 8999999999999999999997 9998755
No 6
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=100.00 E-value=5e-73 Score=562.64 Aligned_cols=273 Identities=24% Similarity=0.379 Sum_probs=230.9
Q ss_pred CChHhHHHHHhcCC-CCCCCCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCC----CC--CCCCCccHHHHHHHHHHH
Q psy11420 1 MTYQKLVSVLESLP-KPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESS----IP--LCKFPGGETEALKRLEKS 73 (315)
Q Consensus 1 ~tf~~F~~~~~~~~-~p~~Pl~~P~~l~~~~~p~~~~~~~~ip~l~~lg~~~~~----~~--~~~~~gGe~~A~~~L~~F 73 (315)
.||++|++++.+.. .|++|++.|..++.. ....++++++++.+.. .. ...|+|||++|+++|++|
T Consensus 156 ~vftpf~r~~~~~~~~~~~~~~~p~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Ge~~A~~~L~~F 227 (509)
T 1u3d_A 156 SMFAAFWERCLSMPYDPESPLLPPKKIISG--------DVSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTF 227 (509)
T ss_dssp SSHHHHHHHHHTCSSCCCCCCCCCSCCCBT--------TGGGSSCCCCCCCCHHHHHHHTTHHHHCCCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCCCCCCCccccCcc--------ccCCCChhHhCCCcccccchhhhccccCCCcHHHHHHHHHHH
Confidence 38999999998763 445566655544321 0112345566654220 00 023899999999999999
Q ss_pred HhcCcccccccccCCCCCCCCCCCCCCchhhhcCCCCHHHHHHHHHHHH-----hcC-CCCCChHhHHHhHHHHHHHHHH
Q psy11420 74 LANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKIL-----ATG-PHAKPPVSLLGQIYWREFYYVV 147 (315)
Q Consensus 74 l~~~~~~~~Y~~~r~~~~~~~~~~S~LSpyL~~G~lS~r~v~~~~~~~~-----~~~-~~~~~~~~~~~eL~WRef~~~~ 147 (315)
++++ +..|.+.|+.|. .++||+|||||++||||||+|++++.+.. ... ...++.+.|++||+|||||+++
T Consensus 228 l~~~--l~~Y~~~Rd~p~--~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~~~~~~~~~~s~~~fl~eL~WREf~~~~ 303 (509)
T 1u3d_A 228 INGP--LLEYSKNRRKAD--SATTSFLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYI 303 (509)
T ss_dssp HTTG--GGGTTTTTTCSS--STTSCCCHHHHHTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHhhhhccCCCC--CCCCCCCChhhccCCCCHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHH
Confidence 9875 889999999886 57899999999999999999999997643 111 0123567899999999999999
Q ss_pred hhcCCCcccccCCccccCCCCCCChHHHHHHHcCCCCChHHHHHHHHHHHhcccCchhHHHHHHHhhhhccCCChHHHHH
Q psy11420 148 GSDTPNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQS 227 (315)
Q Consensus 148 ~~~~p~~~~~~~~~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~R~~vasfl~~~~l~~~W~~G~~ 227 (315)
++++|++...+..+.++.++|+.|++.|++|++|+||+||||||||||++|||||||+|||||||||| +|+|||+.|++
T Consensus 304 ~~~~p~~~~~~~~~~~~~lpW~~d~~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vasfl~k-~L~idWr~G~~ 382 (509)
T 1u3d_A 304 SFNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK-VLQLPWRWGMK 382 (509)
T ss_dssp HHSSTTTTTSCSCCTTTTCCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TSCCCHHHHHH
T ss_pred HHhCccccccchhhhhccCCCcCChHHHHHHHcCCCCCHhHHHHHHHHHHhCCccHHHHHHHHHHHHH-ccCCCchHHHH
Confidence 99999988777777788899999999999999999999999999999999999999999999999998 99999999999
Q ss_pred HHHhhhcchhhhhhhhhHhhhhcccc-ccccccccCHHHHHHhcCcccchhhhhhhcccCC
Q psy11420 228 VFEELLLDADWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDKFELLLDADWAMNAGN 287 (315)
Q Consensus 228 ~f~~~liD~d~a~n~~~W~~~ag~g~-~~~~~r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~ 287 (315)
||+++|||||+++|+|||||+||+|+ .+||+|||||++|+++|||+|+|||+ |+|++..
T Consensus 383 ~F~~~liD~D~a~n~g~wqw~ag~g~d~~py~RifNP~~Q~~kfDp~G~yIrr-wvPEL~~ 442 (509)
T 1u3d_A 383 YFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRR-WLPELSR 442 (509)
T ss_dssp HHHHHCTTCCHHHHHHHHHHHHTCSTTCCCSSCCCCHHHHHHHHCTTSHHHHH-HCGGGTT
T ss_pred HHHHHhccCCcccchHHHHHHhcCCCCCCccccccCHHHHHHhcCCCchhHHH-hCHHhhc
Confidence 99999999999999999999999998 68999999999999999999999997 9999765
No 7
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=2.1e-72 Score=552.87 Aligned_cols=272 Identities=28% Similarity=0.468 Sum_probs=229.6
Q ss_pred CChHhHHHHHhcC-C-CCCCCCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCCCCCCCCCccHHHHHHHHHHHHhcCc
Q psy11420 1 MTYQKLVSVLESL-P-KPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKE 78 (315)
Q Consensus 1 ~tf~~F~~~~~~~-~-~p~~Pl~~P~~l~~~~~p~~~~~~~~ip~l~~lg~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~ 78 (315)
.+||+|++++++. . .+++|++.|..++... .....+|+ +++.........|+|||++|+++|+.|++++
T Consensus 148 ~vft~f~~~~~~~l~~~~p~~~~~p~~~~~~~-----~~~~~~~~---l~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~- 218 (471)
T 1dnp_A 148 KVFTPFKNAWLKRLREGMPECVAAPKVRSSGS-----IEPSPSIT---LNYPRQSFDTAHFPVEEKAAIAQLRQFCQNG- 218 (471)
T ss_dssp SSHHHHHHHHHHHHHTCCCCCCCCCCCCTTCC-----CCCCCCCC---CCSCCCCCCTTTSCCSHHHHHHHHHHHHHTH-
T ss_pred cchHHHHHHHHHhccccCCCCCCCccccCccc-----ccCCCCcc---cCCCccccccccCCCCHHHHHHHHHHHHHHH-
Confidence 3799999999864 2 1245566665443210 01122332 3333221112459999999999999999875
Q ss_pred ccccccccCCCCCCCCCCCCCCchhhhcCCCCHHHHHHHHHHHHhcCCCCCC-hHhHHHhHHHHHHHHHHhhcCCCcccc
Q psy11420 79 WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKP-PVSLLGQIYWREFYYVVGSDTPNFDKM 157 (315)
Q Consensus 79 ~~~~Y~~~r~~~~~~~~~~S~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~-~~~~~~eL~WRef~~~~~~~~p~~~~~ 157 (315)
+..|++.|+.|. ..+||+|||||++||||||+|++++.+...+ ...++ .+.|++||+|||||+++++++|++...
T Consensus 219 -l~~Y~~~rd~p~--~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~-~~~~~~~~~fl~eL~WREf~~~~~~~~P~~~~~ 294 (471)
T 1dnp_A 219 -AGEYEQQRDFPA--VEGTSRLSASLATGGLSPRQCLHRLLAEQPQ-ALDGGAGSVWLNELIWREFYRHLITYHPSLCKH 294 (471)
T ss_dssp -HHHHHHHTTCTT--SCCSCCCHHHHHHTSSCHHHHHHHHHHHCGG-GGGTSTTHHHHHHHHHHHHHHHHHHHCGGGGGT
T ss_pred -HHHhhhccCCcC--ccCCCCCCHhHcCCCcCHHHHHHHHHHHhcc-ccccccHHHHHHHHHHHHHHHHHHHhCCchhcc
Confidence 899999999876 6799999999999999999999999876432 11245 678999999999999999999999877
Q ss_pred -cCCccccCCCCCCChHHHHHHHcCCCCChHHHHHHHHHHHhcccCchhHHHHHHHhhhhccCCChHHHHHHHHhhhcch
Q psy11420 158 -KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDA 236 (315)
Q Consensus 158 -~~~~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~R~~vasfl~~~~l~~~W~~G~~~f~~~liD~ 236 (315)
++++.+..++|+.|++.|++|++|+||+||||||||||++|||||||+||+||||||| +|+|||+.|++||+++||||
T Consensus 295 ~~~~~~~~~l~w~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~RMivAsFL~k-~L~idWr~g~~~F~~~llD~ 373 (471)
T 1dnp_A 295 RPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK-DLLIDWREGERYFMSQLIDG 373 (471)
T ss_dssp CCSSGGGGGSCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TSCCCHHHHHHHHHTTCTTC
T ss_pred CCcchhhhcCCCcCCHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcCHHHHHHHHHHHHH-hcCCCchHHHHHHHHhccCC
Confidence 8888888999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred hhhhhhhhHhhhhcccc-ccccccccCHHHHHHhcCcccchhhhhhhcccCC
Q psy11420 237 DWAMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDKFELLLDADWAMNAGN 287 (315)
Q Consensus 237 d~a~n~~~W~~~ag~g~-~~~~~r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~ 287 (315)
|+++|+|||||++|+|+ .+||+|+|||++|++||||+|+|||+ |+|++..
T Consensus 374 d~a~n~g~wqw~ag~G~d~~py~RifNp~~q~~kfDp~G~YIrr-wvPeL~~ 424 (471)
T 1dnp_A 374 DLAANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQ-WLPELRD 424 (471)
T ss_dssp CHHHHHHHHHHHTTCSTTCCCTTCCCCHHHHHHHHTTTCHHHHH-HCGGGTT
T ss_pred CcccCHHHHHhhcCCCCCCCCcceecCHHHHHHhcCCCchhHHH-hChhhcc
Confidence 99999999999999998 67999999999999999999999997 9998755
No 8
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=100.00 E-value=1.7e-71 Score=553.06 Aligned_cols=279 Identities=25% Similarity=0.438 Sum_probs=230.4
Q ss_pred CChHhHHHHHhcCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCC-CCCCCCCCccHHHHHHHHHHHH-hcCc
Q psy11420 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDES-SIPLCKFPGGETEALKRLEKSL-ANKE 78 (315)
Q Consensus 1 ~tf~~F~~~~~~~~~p~~Pl~~P~~l~~~~~p~~~~~~~~ip~l~~lg~~~~-~~~~~~~~gGe~~A~~~L~~Fl-~~~~ 78 (315)
.+||+|++++++...++.|++.|..++..+. ......+|+++++|+... ......|+|||++|+++|+.|| ++.
T Consensus 192 ~vft~F~r~~~~~~~~~~p~~~p~~~~~~~~---~~~~~~~~~l~~l~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~~- 267 (525)
T 2j4d_A 192 DVYTQFRKSVEAKCSIRSSTRIPLSLGPTPS---VDDWGDVPTLEKLGVEPQEVTRGMRFVGGESAGVGRVFEYFWKKD- 267 (525)
T ss_dssp SSHHHHHHHHHHHCCCCCCCCBCSCCCCCCC---CSCCCCCCCTTTTTCCCCCCCSEEEECCSHHHHHHHHHHHHTTSC-
T ss_pred ccHHHHHHHHHHhcCCCCCCCCccccCCccc---cccccCCCCHHHcCCCcccccccCCCCCcHHHHHHHHHHHHhhCc-
Confidence 3799999999984444567777765554211 112345677888877542 1112248999999999999999 522
Q ss_pred ccccccccCCCCCCCCCCCCCCchhhhcCCCCHHHHHHHHHHHHhcCCCCCChHhHHHhHHHHHHHHHHhhcC-CCcccc
Q psy11420 79 WVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDT-PNFDKM 157 (315)
Q Consensus 79 ~~~~Y~~~r~~~~~~~~~~S~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~~~~eL~WRef~~~~~~~~-p~~~~~ 157 (315)
.+..|++.|+.+.. .++||+|||||++||||||+|++++.+........+++++|++||+|||||++++.++ |.+...
T Consensus 268 ~l~~Y~~~Rd~~~~-~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~~~~~~~~~~~f~~EL~WREf~~~~~~~~~~~~~~~ 346 (525)
T 2j4d_A 268 LLKVYKETRNGMLG-PDYSTKFSPWLAFGCISPRFIYEEVQRYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNSLFHL 346 (525)
T ss_dssp CGGGHHHHTTCCSS-STTSCCCHHHHHTTSSCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHGGGGTST
T ss_pred hHhhhcccCCCccc-cccCCCcChhhcCCcCCHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCchhhhc
Confidence 38999999987532 6899999999999999999999999875433223445678999999999999998765 555544
Q ss_pred cCCccccCCCCCCChHHHHHHHcCCCCChHHHHHHHHHHHhcccCchhHHHHHHHhhhhccCCChHHHHHHHHhhhcchh
Q psy11420 158 KGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDAD 237 (315)
Q Consensus 158 ~~~~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~R~~vasfl~~~~l~~~W~~G~~~f~~~liD~d 237 (315)
+..+ ...++|+.+++.|++|++|+||+||||||||||++|||||||+|||||||||| +|+|||+.|++||+++|||||
T Consensus 347 ~~~~-~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vAsfL~k-~L~idWr~G~~~F~~~LiD~D 424 (525)
T 2j4d_A 347 GGPR-NVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVR-DMGLDWRMGAEWFETCLLDYD 424 (525)
T ss_dssp TTTT-TCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TSCBCHHHHHHHHHHHCTTCC
T ss_pred cCch-hhcCCCCCCHHHHHHHHcCCCCChHHHHHHHHHHHHCCcCHHHHHHHHHHHHH-hcCCCcHHHHHHHHHhccccc
Confidence 4433 35688999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred hhhhhhhHhhhhccccccccccccCHHHHHHhcCcccchhhhhhhcccCC
Q psy11420 238 WAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLLDADWAMNAGN 287 (315)
Q Consensus 238 ~a~n~~~W~~~ag~g~~~~~~r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~ 287 (315)
+++|+|||||+||+|++..++|||||++|+++|||+|+|||+ |+|++..
T Consensus 425 ~a~n~g~WQw~aG~g~D~~~~RifNP~~q~kk~Dp~G~YIrr-wvPEL~~ 473 (525)
T 2j4d_A 425 PCSNYGNWTYGAGVGNDPREDRYFSIPKQAQNYDPEGEYVAF-WLQQLRR 473 (525)
T ss_dssp HHHHHHHHHHHHTCSSCGGGCCCCCHHHHHHHHCTTCHHHHH-HSGGGTT
T ss_pred hhcChHHHHhhcCCCCCccccccCCHHHHhhhcCCCchhHHH-hChhhhc
Confidence 999999999999999966668999999999999999999997 9998754
No 9
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=100.00 E-value=1.9e-71 Score=539.10 Aligned_cols=259 Identities=28% Similarity=0.494 Sum_probs=224.6
Q ss_pred CChHhHHHHHhcCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCCCCCCCCCccHHHHHHHHHHHHhcCccc
Q psy11420 1 MTYQKLVSVLESLPKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEWV 80 (315)
Q Consensus 1 ~tf~~F~~~~~~~~~p~~Pl~~P~~l~~~~~p~~~~~~~~ip~l~~lg~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~~ 80 (315)
.+||+|+|+++ . +..|++.|..++ .|. ....+|. .......|+|||++|+++|+.|++++ +
T Consensus 134 ~~~t~f~k~~~-~--~~~p~~~p~~~~---~p~---~~~~l~~--------~~~~~~~~~~Ge~~A~~~L~~Fl~~~--l 194 (420)
T 2j07_A 134 RVYTPFSRLYR-G--AAPPLPPPEALP---KGP---EEGEIPR--------EDPGLPLPEPGEEAALAGLRAFLEAK--L 194 (420)
T ss_dssp SSHHHHHTTCC-C--CCCCCCCCSSCC---CCC---CCCCCCC--------CCCSSCCCCCSHHHHHHHHHHHHHHT--G
T ss_pred ccccHHHHHHh-h--ccCCCCCccccC---CCC---ccccCCC--------cccccccCCCcHHHHHHHHHHHHHHH--H
Confidence 37999999987 2 234566555431 111 0112222 11113459999999999999999886 8
Q ss_pred ccccccCCCCCCCCCCCCCCchhhhcCCCCHHHHHHHHHHHHhcCCCCCChHhHHHhHHHHHHHHHHhhcCCCcccccCC
Q psy11420 81 RKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGN 160 (315)
Q Consensus 81 ~~Y~~~r~~~~~~~~~~S~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~~~~eL~WRef~~~~~~~~p~~~~~~~~ 160 (315)
.+|++.|+.|. .++||+|||||++||||||+|++++.+.. .++.+.|++||+|||||+++++++|++...+.+
T Consensus 195 ~~Y~~~rd~p~--~~~tS~LSpyL~~G~lSpr~v~~~~~~~~-----~~~~~~f~~eL~WREf~~~~~~~~p~~~~~~~~ 267 (420)
T 2j07_A 195 PRYAEERDRLD--GEGGSRLSPYFALGVLSPRLAAWEAERRG-----GEGARKWVAELLWRDFSYHLLYHFPWMAERPLD 267 (420)
T ss_dssp GGHHHHTTCTT--CTTSCCCHHHHHTTSSCHHHHHHHHHHHC-----SHHHHHHHHHHHHHHHHHHHHHHCGGGGTSCSS
T ss_pred hhhhhccCCCC--ccCCCCcchhhcCCccCHHHHHHHHHHHh-----ccCHHHHHHHHHHHHHHHHHHHhCCcccccccc
Confidence 99999999886 68999999999999999999999998753 245678999999999999999999999888888
Q ss_pred ccccCCCCCCChHHHHHHHcCCCCChHHHHHHHHHHHhcccCchhHHHHHHHhhhhccCCChHHHHHHHHhhhcchhhhh
Q psy11420 161 KICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAM 240 (315)
Q Consensus 161 ~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~R~~vasfl~~~~l~~~W~~G~~~f~~~liD~d~a~ 240 (315)
+.++.++|+.|++.|++|++|+||+||||||||||++|||||||+|||||||||| +|+|||+.|++||+++|||||+++
T Consensus 268 ~~~~~l~w~~d~~~~~~w~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vasfl~k-~L~idWr~g~~~F~~~llD~d~a~ 346 (420)
T 2j07_A 268 PRFQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVK-HLLLPWKRCEEAFRHLLLDGDRAV 346 (420)
T ss_dssp GGGTTCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TSCCCHHHHHHHHHHHCTTCCHHH
T ss_pred hhhhcCCcccCHHHHHHHHcCCCCcHhHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCCCChHHHHHHHHHhhcCCccc
Confidence 8888999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hhhhHhhhhcccc-ccccccccCHHHHHHhcCcccchhhhhhhcccCC
Q psy11420 241 NAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDKFELLLDADWAMNAGN 287 (315)
Q Consensus 241 n~~~W~~~ag~g~-~~~~~r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~ 287 (315)
|+|||||++|+|+ .+||||+|||++|++||||+|+|||+ |+|+...
T Consensus 347 n~g~wqw~aG~g~d~~pyfR~fNp~~q~~kfDp~g~yir~-w~pel~~ 393 (420)
T 2j07_A 347 NLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKR-WAPEYPS 393 (420)
T ss_dssp HHHHHHHHTTSSGGGCCTTCCCCHHHHHHHHSTTSHHHHH-HCTTCSS
T ss_pred cHHHHHHHHccCCCCCCCceeeCHHHHHHHhCCCchhHHH-hChhhcC
Confidence 9999999999988 68899999999999999999999997 9998654
No 10
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=9e-71 Score=536.43 Aligned_cols=250 Identities=26% Similarity=0.469 Sum_probs=217.5
Q ss_pred ChHhHHHHHhcC--CCCCCCCCCCCCCCCCcCCCCCCCCCCCCCcccCCCCCCCCCCCCCCccHHHHHHHHHHHHhcCcc
Q psy11420 2 TYQKLVSVLESL--PKPKPADDAPTSLPRECQGILHPDEHLVPTMKEMGLDESSIPLCKFPGGETEALKRLEKSLANKEW 79 (315)
Q Consensus 2 tf~~F~~~~~~~--~~p~~Pl~~P~~l~~~~~p~~~~~~~~ip~l~~lg~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~~~ 79 (315)
+||+|++++++. ..|+.|+|.|..++. |. . +.++ +. ....++|||++|+++|+ |++++
T Consensus 139 vftpf~~~~~~~~~~~p~~~~~~~~~~~~---p~------~---~~~l---p~--~~~~~~~Ge~~A~~~L~-Fl~~~-- 198 (440)
T 2e0i_A 139 NFTSFYNEVSKVKVREPETMEGSFDVTDS---SM------N---VDFL---LT--FKKIESPLFRGGRREGL-YLLHR-- 198 (440)
T ss_dssp SHHHHHHHHTTSCCCCCCCCCCCBCCCSS---SB------C---GGGG---GG--TCCCCCTTCCCSHHHHH-HHHTC--
T ss_pred cCcHHHHHHHHhcccccccCCCCcccCCC---cc------h---hhhC---Cc--cccCCCCCHHHHHHHHH-HHHhh--
Confidence 799999999875 222333444433322 10 0 1111 00 12357999999999999 99886
Q ss_pred cccccccCCCCCCCCCCCCCCchhhhcCCCCHHHHHHHHHHHHhcCCCCCChHhHHHhHHHHHHHHHHhhcCCCcccccC
Q psy11420 80 VRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKG 159 (315)
Q Consensus 80 ~~~Y~~~r~~~~~~~~~~S~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~~~~eL~WRef~~~~~~~~p~~~~~~~ 159 (315)
+..| +.|+.|. .++||+|||||++||||||+|++++ ++.+.|++||+|||||+++++++|++...++
T Consensus 199 l~~Y-~~rd~p~--~~~tS~LSPyL~~G~lSpr~v~~~~----------~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~ 265 (440)
T 2e0i_A 199 NVDF-RRRDYPA--ENNNYRLSPHLKFGTISMREAYYTQ----------KGKEEFVRELYWRDFFTLLAYYNPHVFGHCY 265 (440)
T ss_dssp CCCG-GGTTCTT--TTCCCCCHHHHHTTSSCHHHHHHHS----------TTCHHHHHHHHHHHHHHHHHHHCGGGTTSCS
T ss_pred hhcC-CcCCCcc--ccCCCCccHhHhCCCCCHHHHHHHh----------cCHHHHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 8999 9999885 7899999999999999999999987 2356899999999999999999999998888
Q ss_pred CccccCCCCCCChHHHHHHHcCCCCChHHHHHHHHHHHhcccCchhHHHHHHHhhhhccCCChHHHHHHHHhhhcchhhh
Q psy11420 160 NKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239 (315)
Q Consensus 160 ~~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~R~~vasfl~~~~l~~~W~~G~~~f~~~liD~d~a 239 (315)
++.++.++|+.|++.|++|++|+||+||||||||||++|||||||+|||||||||| +|+|||+.|++||+++|||||++
T Consensus 266 ~~~~~~l~W~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k-~L~idWr~g~~~F~~~llD~d~a 344 (440)
T 2e0i_A 266 RREYDNISWENNESYFEAWKEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVK-VLFVDWRWGERYFATKLVDYDPA 344 (440)
T ss_dssp SGGGGGCCCCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-TSCCCHHHHHHHHHHHCTTCCHH
T ss_pred chhhhcCCcccchHHHHHHHhCCCCCHHHHHHHHHHHHHcchhHHHHHHHHHHHHH-HhCCCccHHHHHHHHHcccCCcc
Confidence 88899999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred hhhhhHhhhhccccccccccccCHHHHHHhcCcccchhhhhhhcccCC
Q psy11420 240 MNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKFELLLDADWAMNAGN 287 (315)
Q Consensus 240 ~n~~~W~~~ag~g~~~~~~r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~ 287 (315)
+|+|||||++|+|++. |+|+|||++|++||||+|+|||+ |+|+..+
T Consensus 345 ~n~g~wqw~aG~g~d~-~~RifNp~~q~~kfDp~g~yIr~-wvPeL~~ 390 (440)
T 2e0i_A 345 INNGNWQWIASTGVDY-MFRVFNPWKQQEKFDPEAKFIKE-WVEELKD 390 (440)
T ss_dssp HHHHHHHHHTTSSSCC-SCCCCCHHHHHHHHCTTCHHHHH-HCGGGGG
T ss_pred ccHHHHHHHhCcCCCC-CCCccCHHHHHHHhCCCcHhHHH-hCHHhhc
Confidence 9999999999999877 99999999999999999999997 9998654
No 11
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=100.00 E-value=8.3e-59 Score=457.98 Aligned_cols=210 Identities=22% Similarity=0.327 Sum_probs=181.8
Q ss_pred CCCccHHHHHHHHHHHHhcCcccccccccCCCCCCCCCCCCCCchhhhcCCCCHHHHHHHHHHHHhcCCCCCChHhHHHh
Q psy11420 58 KFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVSLLGQ 137 (315)
Q Consensus 58 ~~~gGe~~A~~~L~~Fl~~~~~~~~Y~~~r~~~~~~~~~~S~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~~~~e 137 (315)
.|+|||++|+++|++||+++ +..|.+.|+.|. .++||+|||||++||||||+|++++.+... ..++.++|++|
T Consensus 247 ~~~~Ge~~A~~~L~~Fl~~~--l~~Y~~~Rd~p~--~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~---~~~~~e~fl~E 319 (482)
T 2xry_A 247 HFEPGEKAAKKVMESFIADR--LDSYGALRNDPT--KNMLSNLSPYLHFGQISSQRVVLEVEKAES---NPGSKKAFLDE 319 (482)
T ss_dssp SCCCSHHHHHHHHHHHHHHT--HHHHHHHTTCTT--SCCSCCCHHHHHTTSSCHHHHHHHHHHCCC---CTTHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHH--HhhhccccCCCC--ccCCCCcCHHHhCCccCHHHHHHHHHHhhc---ccccHHHHHHH
Confidence 58999999999999999886 899999999986 589999999999999999999999977431 24567899999
Q ss_pred HH-HHHHHHHHhhcCCCcccccCCccccCCC---CCCCh-H---HHHHHHcCCCCChHHHHHHHHHHHhcccCchhHHHH
Q psy11420 138 IY-WREFYYVVGSDTPNFDKMKGNKICCQVD---WDTNE-K---YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAV 209 (315)
Q Consensus 138 L~-WRef~~~~~~~~p~~~~~~~~~~~~~~~---w~~~~-~---~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~R~~v 209 (315)
|+ ||||++++++++|++..++..+.+.+.+ |+.++ + .+++|++|+||+||||||||||++|||||||+||||
T Consensus 320 Li~WREf~~~~~~~~P~~~~~~~~~~w~~~~~~~~~~d~~~~~~~~~aw~~G~TG~P~VDAaMrqL~~tG~mHnr~RM~v 399 (482)
T 2xry_A 320 ILIWKEISDNFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHIYTLEEFEAGKTHDPLWNASQMELLSTGKMHGYTRMYW 399 (482)
T ss_dssp HTHHHHHHHHHHHHCTTTTSGGGSCHHHHHHHHHTTTSCCSCCCCHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccccccchHHHhhhhhhcccCchhhhHHHHHHHhCCcCCHHHHHHHHHHHHhCccccHHHHHH
Confidence 98 9999999999999998766654432211 22332 2 599999999999999999999999999999999999
Q ss_pred HHHhhhhccCCCh-HHHHHHHHhhh-------cchhhhhhhhhHhhhhccccc-----cccc---cccCHHHHHHhcCcc
Q psy11420 210 ACFLTRGDLYLSW-EEGQSVFEELL-------LDADWAMNAGNWMWLSASAFF-----HQFF---RVYSPVAFGKKTDKF 273 (315)
Q Consensus 210 asfl~~~~l~~~W-~~G~~~f~~~l-------iD~d~a~n~~~W~~~ag~g~~-----~~~~---r~~~p~~~~~~~dp~ 273 (315)
| | +| ||| +.|++||+++| ||||+++|+|||||++|++.+ .||| |+|||++|++||||+
T Consensus 400 a----k-~L-idW~~~ge~~f~~~l~Lnd~y~iD~d~ann~ggwqw~agG~~~~~~~~~p~fg~~R~fnp~~q~~kfD~~ 473 (482)
T 2xry_A 400 A----K-KI-LEWSESPEKALEIAICLNDRYELDGRDPNGYAGIAWSIGGVHDRAWGEREVTGKIRYMSYEGCKRKFDVK 473 (482)
T ss_dssp H----H-HH-HHTSSSHHHHHHHHHHHHHHHCTTCSSHHHHHHHHHHHHCTTSCCCCCBTTTBTSCCCCHHHHHHHSCHH
T ss_pred H----c-cc-CCCCchHHHHHHHHHHhcCceeccCCCccchhHhhhhhcCCCCCCcccccccccceeechhHhhhhcCHH
Confidence 7 6 67 999 89999999994 999999999999999983334 3677 999999999999999
Q ss_pred cchhhhhhh
Q psy11420 274 ELLLDADWA 282 (315)
Q Consensus 274 g~~Ir~~w~ 282 (315)
| |||+ |+
T Consensus 474 ~-yir~-w~ 480 (482)
T 2xry_A 474 L-YIEK-YS 480 (482)
T ss_dssp H-HHHH-TC
T ss_pred H-HHHH-Hh
Confidence 8 9997 76
No 12
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=100.00 E-value=7.1e-58 Score=451.91 Aligned_cols=214 Identities=21% Similarity=0.311 Sum_probs=184.9
Q ss_pred CCCccHHHHHHHH----HHHHhcCcccccccccCCCCCCCCCCCCCCchhhhcCCCCHHHHHHHHHHHHhcCCCCCChHh
Q psy11420 58 KFPGGETEALKRL----EKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPHAKPPVS 133 (315)
Q Consensus 58 ~~~gGe~~A~~~L----~~Fl~~~~~~~~Y~~~r~~~~~~~~~~S~LSpyL~~G~lS~r~v~~~~~~~~~~~~~~~~~~~ 133 (315)
.|+|||++|+++| +.|++++ +..|.+.|+.|.. .++||+|||||+|||||||+|++++.+.... ..++.++
T Consensus 241 ~~~~Ge~~A~~~L~~~~~~Fl~~~--l~~Y~~~Rd~p~~-~~~tS~LSPyL~~G~lS~r~v~~~~~~~~~~--~~~~~~~ 315 (506)
T 3umv_A 241 WCEPGEEAAIEALLGSKDGFLTKR--IKSYETDRNDPTK-PRALSGLSPYLHFGHISAQRCALEAKKCRHL--SPKSVDA 315 (506)
T ss_dssp SSCCSHHHHHHHHHCTTTCHHHHT--GGGHHHHTTCTTC-GGGSCCCHHHHHHTSSCHHHHHHHHHHHGGG--SHHHHHH
T ss_pred CCCCCHHHHHHHHHhhHHHHHHhH--HhhhccccCCccc-cCCCccCCHHHhCCCcCHHHHHHHHHHHHhh--ccccHHH
Confidence 3699999999999 9999875 8999999999862 3799999999999999999999999876532 2345789
Q ss_pred HHHhHHHH-HHHHHHhhcCCCcccccCCccccCCCCCC--------C-hH---HHHHHHcCCCCChHHHHHHHHHHHhcc
Q psy11420 134 LLGQIYWR-EFYYVVGSDTPNFDKMKGNKICCQVDWDT--------N-EK---YLEAWSHGKTGYPFIDAIMRQLRLEGW 200 (315)
Q Consensus 134 ~~~eL~WR-ef~~~~~~~~p~~~~~~~~~~~~~~~w~~--------~-~~---~~~~w~~G~TG~p~vDA~mrqL~~tG~ 200 (315)
|++||+|| |||+++++++|+++..... ++|.. + ++ .|++|++|+||+|||||+||||++|||
T Consensus 316 f~~eL~WRREf~~~~~~~~p~~~~~~~~-----~~w~~~~l~~~~~d~~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~ 390 (506)
T 3umv_A 316 FLEELVVRRELADNFCYYQPQYDSLSGA-----WEWARKTLMDHAADKREHIYTREQLENAKTHDPLWNASQLEMVHHGK 390 (506)
T ss_dssp HHHHHTHHHHHHHHHHHHCTTTTSGGGS-----CHHHHHHHHHTTTSCCSCCCCHHHHHTTCSSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhHHHHHHHHHhCcchhhhhcc-----chhhhhhhhhhcccchhhhccHHHHHcCCCCCHHHHHHHHHHHHhCc
Confidence 99999996 9999999999998765433 33421 2 12 499999999999999999999999999
Q ss_pred cCchhHHHHHHHhhhhccCCChHHHHH-------HHHhh-hcchhhhhhhhhHhhhhc-c---cc-ccccc---cccCHH
Q psy11420 201 IHHLARHAVACFLTRGDLYLSWEEGQS-------VFEEL-LLDADWAMNAGNWMWLSA-S---AF-FHQFF---RVYSPV 264 (315)
Q Consensus 201 mhnr~R~~vasfl~~~~l~~~W~~G~~-------~f~~~-liD~d~a~n~~~W~~~ag-~---g~-~~~~~---r~~~p~ 264 (315)
||||+||+|| | +| |+|+.|++ ||+++ |||||+++|++||||++| + |+ ..+|| |+|||+
T Consensus 391 mHnr~Rm~~a----k-~l-l~W~~g~~~~~~~a~~f~~~~llD~d~~~n~~~wqw~a~G~~~~g~~~~p~fg~iR~~np~ 464 (506)
T 3umv_A 391 MHGFMRMYWA----K-KI-LEWTSGPEEALSTAIYLNDKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYA 464 (506)
T ss_dssp CCHHHHHHHH----H-HH-HHTSSSHHHHHHHHHHHHHHHCTTCSSHHHHHHHHHHHHCTTSCCCCCBTTTBTSCCCCHH
T ss_pred hhHHHHHHHH----H-hh-ccCCCCHHHHHHHHHHHhhccCcccCccccccceeEEecCCCCCCCccccccCcceeECHH
Confidence 9999999987 6 78 99999999 99996 999999999999999994 3 55 35666 999999
Q ss_pred HHHHhcCccc--chhhhhhhcccCCc
Q psy11420 265 AFGKKTDKFE--LLLDADWAMNAGNW 288 (315)
Q Consensus 265 ~~~~~~dp~g--~~Ir~~w~~~~~~w 288 (315)
+|++||||+| +|||+ |+|++..-
T Consensus 465 ~q~~k~Dp~gyi~yir~-wvpel~~~ 489 (506)
T 3umv_A 465 GCKRKFDVDAYISYVKR-LAGQSKKR 489 (506)
T ss_dssp HHHHHSCHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHhCCCchHHHHHH-hCHHhcCC
Confidence 9999999999 99997 99987653
No 13
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=100.00 E-value=6.6e-53 Score=413.00 Aligned_cols=200 Identities=17% Similarity=0.213 Sum_probs=164.9
Q ss_pred CCCCCccHHHHHHHHHHHHhcCcccccccccCCCCCC--CCCCCCCCchhhhcCCCCHHHHHHHHHHHHhcCCC-CCChH
Q psy11420 56 LCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNS--LEPSTTVLSPYLKFGCLSVRLFYHELKKILATGPH-AKPPV 132 (315)
Q Consensus 56 ~~~~~gGe~~A~~~L~~Fl~~~~~~~~Y~~~r~~~~~--~~~~~S~LSpyL~~G~lS~r~v~~~~~~~~~~~~~-~~~~~ 132 (315)
+..|++||.+|+++|+.|++++ +..|.+.++.+.. ...+||+|||||++||||||+|++++.+...+... .++.+
T Consensus 234 ~~~~~~ge~~A~~~L~~Fl~~r--l~~Y~~~rD~~~~~~~~~~tS~LSpyL~~G~LSpRev~~~~~~~~~~~~~~~~~~e 311 (522)
T 3zxs_A 234 PFHWATDRAEALRALDHFIRES--LPRFGDEQDAMLADDPFLSHALLSSSMNLGLLGPMEVCRRAETEWREGRAPLNAVE 311 (522)
T ss_dssp SCCCCCSHHHHHHHHHHHHHHT--GGGTTTTTTCCBTTBSSTTCCCCHHHHHHTSSCHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhh--hhhhhhhccCcccCCCCCCcccccHHHhCCCcCHHHHHHHHHHHHHhcCCchhhHH
Confidence 4569999999999999999886 7888888877652 12379999999999999999999999876653221 23567
Q ss_pred hHHHhHH-HHHHHHHHhhcC-CCcccccCCccccCCCCCCChHHHHHHHcCCCCChHHHHHHHHHHHhcccCchhHHHHH
Q psy11420 133 SLLGQIY-WREFYYVVGSDT-PNFDKMKGNKICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVA 210 (315)
Q Consensus 133 ~~~~eL~-WRef~~~~~~~~-p~~~~~~~~~~~~~~~w~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mhnr~R~~va 210 (315)
+|++||+ |||||+++++++ |.+...+.......+ +++|++|+||+|||||+||||++|||||||+|||||
T Consensus 312 ~firellgWREF~~~l~~~~~P~~~~~n~~~~~~~l--------~~~~w~G~TG~P~VDA~MRqL~~TGwmHnr~RmmVa 383 (522)
T 3zxs_A 312 GFIRQILGWREYVRGIWTLSGPDYIRSNGLGHSAAL--------PPLYWGKPTRMACLSAAVAQTRDLAYAHHIQRLMVT 383 (522)
T ss_dssp HHHHHHHTHHHHHHHHHHHHGGGGGGCCTTCCCBCC--------CGGGGTCCCSCHHHHHHHHHHHHHSCCCHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccccccccccc--------hHHHhcCCCCCHHHHHHHHHHHHHhchhHHHHHHHH
Confidence 8999997 999999999875 887655543322222 234559999999999999999999999999999999
Q ss_pred HHhhhhccCCChHHHHHHHHhhhcch-hh---hhhhhhHhhhhcccc-ccccccccCHHHHHHhcCcccchhhh
Q psy11420 211 CFLTRGDLYLSWEEGQSVFEELLLDA-DW---AMNAGNWMWLSASAF-FHQFFRVYSPVAFGKKTDKFELLLDA 279 (315)
Q Consensus 211 sfl~~~~l~~~W~~G~~~f~~~liD~-d~---a~n~~~W~~~ag~g~-~~~~~r~~~p~~~~~~~dp~g~~Ir~ 279 (315)
|||+| +|+|||+.|++||+++|||| || ++++|+|||++|+++ .+||+ +.|.||++
T Consensus 384 sfl~k-~L~idWr~G~~wF~~~LiD~~~Wv~~~N~~Gm~q~a~Gg~~~~KPY~-------------~~~~yI~k 443 (522)
T 3zxs_A 384 GNFAL-LAGVDPAEVHEWYLSVYIDALEWVEAPNTIGMSQFADHGLLGSKPYV-------------SSGAYIDR 443 (522)
T ss_dssp HHHHH-HTTBCHHHHHHHHHHHCTTCCHHHHHHHHHTTTTCCSSSTTCSSCCC-------------CCHHHHHH
T ss_pred HHHHH-HcCCChHHHHHHHHHHhcchhhhhhccccccchheecCCccCCCCCC-------------CchHHHHH
Confidence 99998 99999999999999999999 64 577899999998766 56764 46777766
No 14
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=99.38 E-value=8.3e-15 Score=144.97 Aligned_cols=92 Identities=27% Similarity=0.478 Sum_probs=78.5
Q ss_pred ChHHHHHHHHhhhcchhh-hhhhhhHhhhhccccccccc--cccCHHHHHHhcCcccchhhhhhhcccCCceeecccCC-
Q psy11420 221 SWEEGQSVFEELLLDADW-AMNAGNWMWLSASAFFHQFF--RVYSPVAFGKKTDKFELLLDADWAMNAGNWMWLSASAF- 296 (315)
Q Consensus 221 ~W~~G~~~f~~~liD~d~-a~n~~~W~~~ag~g~~~~~~--r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~w~~~s~~~~- 296 (315)
.|+.|.+.|. +||+-+ +++.+|||+.........++ .+..+|+.|.+|+ ...|||+||++|+|||||++|++.
T Consensus 333 aW~~G~TG~P--~VDAaMrqL~~tG~mHnr~Rm~vasfl~k~L~idWr~G~~~F-~~~liD~D~a~n~g~wqw~ag~g~d 409 (509)
T 1u3d_A 333 AWRQGRTGYP--LVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYF-WDTLLDADLESDALGWQYITGTLPD 409 (509)
T ss_dssp HHHHTCSSCH--HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHH-HHHCTTCCHHHHHHHHHHHHTCSTT
T ss_pred HHHcCCCCCH--hHHHHHHHHHHhCCccHHHHHHHHHHHHHccCCCchHHHHHH-HHHhccCCcccchHHHHHHhcCCCC
Confidence 4666777777 999999 89999999986643322221 5889999999999 789999999999999999999975
Q ss_pred CCCcccccChhhhhhhcCC
Q psy11420 297 FHQFFRVYSPVAFGKKTDK 315 (315)
Q Consensus 297 ~~~~~~~~~p~~~~~~~d~ 315 (315)
..+++|||||++|++||||
T Consensus 410 ~~py~RifNP~~Q~~kfDp 428 (509)
T 1u3d_A 410 SREFDRIDNPQFEGYKFDP 428 (509)
T ss_dssp CCCSSCCCCHHHHHHHHCT
T ss_pred CCccccccCHHHHHHhcCC
Confidence 6899999999999999998
No 15
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=99.34 E-value=2e-14 Score=142.68 Aligned_cols=92 Identities=40% Similarity=0.771 Sum_probs=78.5
Q ss_pred ChHHHHHHHHhhhcchhh-hhhhhhHhhhhcccccccc-c--cccCHHHHHHhcCcccchhhhhhhcccCCceeecccCC
Q psy11420 221 SWEEGQSVFEELLLDADW-AMNAGNWMWLSASAFFHQF-F--RVYSPVAFGKKTDKFELLLDADWAMNAGNWMWLSASAF 296 (315)
Q Consensus 221 ~W~~G~~~f~~~liD~d~-a~n~~~W~~~ag~g~~~~~-~--r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~w~~~s~~~~ 296 (315)
.|+.|.+.|. +||+-+ .++.+|||+.........+ . .+..+|+.|.+|+ ...+||+|+++|++||||+||+|.
T Consensus 338 aW~~G~TG~P--~vDA~MrqL~~tG~mHnr~Rm~vAsfl~k~~L~idWr~G~~~F-~~~liD~D~a~n~g~Wqw~ag~g~ 414 (537)
T 3fy4_A 338 AWRDGKTGYP--WIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVF-ERLLIDSDWAINNGNWMWLSCSSF 414 (537)
T ss_dssp HHHTTCSSCH--HHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCBCHHHHHHHH-HHHCTTCCHHHHHHHHHHHTTSSS
T ss_pred HHHcCCCCCH--HHHHHHHHHHHhCcccHHHHHHHHHHHHHHhcCCCcHHHHHHH-HHHccccccccChHhhhhhcccCC
Confidence 4667777777 999998 8999999997664332222 1 4789999999999 689999999999999999999988
Q ss_pred CCCcccccChhhhhhhcCC
Q psy11420 297 FHQFFRVYSPVAFGKKTDK 315 (315)
Q Consensus 297 ~~~~~~~~~p~~~~~~~d~ 315 (315)
..+++|||||++|++||||
T Consensus 415 d~~~fRifNP~~Q~~kfDp 433 (537)
T 3fy4_A 415 FYQFNRIYSPISFGKKYDP 433 (537)
T ss_dssp CCCTTCCCCTTTTGGGTCT
T ss_pred CcccccccCHHHHHHHhCC
Confidence 6679999999999999998
No 16
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=99.33 E-value=2e-14 Score=141.55 Aligned_cols=92 Identities=22% Similarity=0.293 Sum_probs=76.8
Q ss_pred ChHHHHHHHHhhhcchhh-hhhhhhHhhhhccccccccc--cccCHHHHHHhcCcccchhhhhhhcccCCceeecccCCC
Q psy11420 221 SWEEGQSVFEELLLDADW-AMNAGNWMWLSASAFFHQFF--RVYSPVAFGKKTDKFELLLDADWAMNAGNWMWLSASAFF 297 (315)
Q Consensus 221 ~W~~G~~~f~~~liD~d~-a~n~~~W~~~ag~g~~~~~~--r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~w~~~s~~~~~ 297 (315)
.|+.|.+.|. +||+-+ +++.+|||+.........++ .+..+|+.|.+++ ...+||+||++|+|||||++|++..
T Consensus 329 aW~~G~TG~P--~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~G~~~F-~~~LiD~D~a~N~g~wqw~ag~g~d 405 (489)
T 1np7_A 329 LWRSGQTGYP--LVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWF-ESCLIDYDVCSNWGNWNYTAGIGND 405 (489)
T ss_dssp HHHTTCSSCH--HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCBCHHHHHHHH-HHHCTTCCHHHHHHHHHHHHTSSCC
T ss_pred HHHcCCCCCh--hHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCChhHHHHH-HHHhcccChhcChHhhhhhhccCCC
Confidence 3455556666 999999 89999999986643322221 5788999999999 7899999999999999999999886
Q ss_pred CCcccccChhhhhhhcCC
Q psy11420 298 HQFFRVYSPVAFGKKTDK 315 (315)
Q Consensus 298 ~~~~~~~~p~~~~~~~d~ 315 (315)
..++|+|||++|++||||
T Consensus 406 ~~~~RifNp~~q~~kfDp 423 (489)
T 1np7_A 406 ARDFRYFNIPKQSQQYDP 423 (489)
T ss_dssp TTSCCCCCHHHHHHHHST
T ss_pred cccccccCHHHHhhhcCC
Confidence 668999999999999998
No 17
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=99.30 E-value=2.9e-14 Score=141.66 Aligned_cols=92 Identities=36% Similarity=0.668 Sum_probs=79.9
Q ss_pred ChHHHHHHHHhhhcchhh-hhhhhhHhhhhccccccccc---cccCHHHHHHhcCcccchhhhhhhcccCCceeecccCC
Q psy11420 221 SWEEGQSVFEELLLDADW-AMNAGNWMWLSASAFFHQFF---RVYSPVAFGKKTDKFELLLDADWAMNAGNWMWLSASAF 296 (315)
Q Consensus 221 ~W~~G~~~f~~~liD~d~-a~n~~~W~~~ag~g~~~~~~---r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~w~~~s~~~~ 296 (315)
.|+.|.+.|. +||+-| .++.+|||+.........+. .+..+|+.|.+++ ...+||+|+++|+|||||++|++.
T Consensus 351 aW~~G~TG~P--~VDA~MrqL~~tG~mHnr~Rm~vAsfl~k~~L~idWr~G~~~F-~~~llD~D~a~n~g~Wqw~ag~g~ 427 (538)
T 3tvs_A 351 SWRLGQTGFP--LIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHGLQHF-LKYLLDADWSVCAGNWMWVSSSAF 427 (538)
T ss_dssp HHHTTCSSCH--HHHHHHHHHHHTCCCCHHHHHHHHHHHTTTTTCCCHHHHHHHH-HHHCTTCCHHHHHHHHHHHSCCCS
T ss_pred HHHhCCCCCH--HHHHHHHHHHHhCCccHHHHHHHHHHHHHhhhCCCchHHHHHH-HHHcccCchhhchhhhhhhhcCCC
Confidence 4788888888 999998 89999999987654322221 4789999999999 789999999999999999999986
Q ss_pred --CCCcccccChhhhhhhcCC
Q psy11420 297 --FHQFFRVYSPVAFGKKTDK 315 (315)
Q Consensus 297 --~~~~~~~~~p~~~~~~~d~ 315 (315)
..+++|||||++|++||||
T Consensus 428 Dd~~pyfRifNP~~Q~~kfDp 448 (538)
T 3tvs_A 428 ERLLDSSLVTCPVALAKRLDP 448 (538)
T ss_dssp SCCCTHHHHCSTTTHHHHSCT
T ss_pred cCCCCceeeeCHHHHHHHhCC
Confidence 5799999999999999998
No 18
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=99.28 E-value=5.5e-14 Score=139.53 Aligned_cols=92 Identities=21% Similarity=0.251 Sum_probs=77.5
Q ss_pred ChHHHHHHHHhhhcchhh-hhhhhhHhhhhccccccccc--cccCHHHHHHhcCcccchhhhhhhcccCCceeecccCCC
Q psy11420 221 SWEEGQSVFEELLLDADW-AMNAGNWMWLSASAFFHQFF--RVYSPVAFGKKTDKFELLLDADWAMNAGNWMWLSASAFF 297 (315)
Q Consensus 221 ~W~~G~~~f~~~liD~d~-a~n~~~W~~~ag~g~~~~~~--r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~w~~~s~~~~~ 297 (315)
.|+.|.+.|. +||+-+ +++..|||+.........++ .+..+|+.|.+|+ ...|||+|+++|+|||||++|++..
T Consensus 365 aW~~G~TG~P--~VDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~G~~~F-~~~LiD~D~a~n~g~WQw~aG~g~D 441 (525)
T 2j4d_A 365 SWRDAKTGYP--LIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWF-ETCLLDYDPCSNYGNWTYGAGVGND 441 (525)
T ss_dssp HHHTTCSSCH--HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCBCHHHHHHHH-HHHCTTCCHHHHHHHHHHHHTCSSC
T ss_pred HHHcCCCCCh--HHHHHHHHHHHHCCcCHHHHHHHHHHHHHhcCCCcHHHHHHH-HHhccccchhcChHHHHhhcCCCCC
Confidence 4566666777 999998 89999999986643322221 6789999999999 7999999999999999999999875
Q ss_pred CCcccccChhhhhhhcCC
Q psy11420 298 HQFFRVYSPVAFGKKTDK 315 (315)
Q Consensus 298 ~~~~~~~~p~~~~~~~d~ 315 (315)
...+|||||++|+|+|||
T Consensus 442 ~~~~RifNP~~q~kk~Dp 459 (525)
T 2j4d_A 442 PREDRYFSIPKQAQNYDP 459 (525)
T ss_dssp GGGCCCCCHHHHHHHHCT
T ss_pred ccccccCCHHHHhhhcCC
Confidence 556899999999999998
No 19
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=99.26 E-value=1.1e-13 Score=135.71 Aligned_cols=92 Identities=26% Similarity=0.573 Sum_probs=78.9
Q ss_pred ChHHHHHHHHhhhcchhh-hhhhhhHhhhhcccccccc--ccccCHHHHHHhcCcccchhhhhhhcccCCceeecccCC-
Q psy11420 221 SWEEGQSVFEELLLDADW-AMNAGNWMWLSASAFFHQF--FRVYSPVAFGKKTDKFELLLDADWAMNAGNWMWLSASAF- 296 (315)
Q Consensus 221 ~W~~G~~~f~~~liD~d~-a~n~~~W~~~ag~g~~~~~--~r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~w~~~s~~~~- 296 (315)
.|+.|.+.|. +||+-+ +++.+|||+.........+ -.+..+|+.|.+++ ...+||+|+++|++||||++|++.
T Consensus 315 aW~~G~TG~P--~vDAaMrqL~~tG~mHnr~RMivAsFL~k~L~idWr~g~~~F-~~~llD~d~a~n~g~wqw~ag~G~d 391 (471)
T 1dnp_A 315 AWQEGKTGYP--IVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYF-MSQLIDGDLAANNGGWQWAASTGTD 391 (471)
T ss_dssp HHHHTCSSCH--HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHH-HTTCTTCCHHHHHHHHHHHTTCSTT
T ss_pred HHHhCCCCCH--HHHHHHHHHHHHCCcCHHHHHHHHHHHHHhcCCCchHHHHHH-HHhccCCCcccCHHHHHhhcCCCCC
Confidence 4577888888 999999 8999999998765333323 15678999999999 789999999999999999999865
Q ss_pred CCCcccccChhhhhhhcCC
Q psy11420 297 FHQFFRVYSPVAFGKKTDK 315 (315)
Q Consensus 297 ~~~~~~~~~p~~~~~~~d~ 315 (315)
..+++|+|||++|++||||
T Consensus 392 ~~py~RifNp~~q~~kfDp 410 (471)
T 1dnp_A 392 AAPYFRIFNPTTQGEKFDH 410 (471)
T ss_dssp CCCTTCCCCHHHHHHHHTT
T ss_pred CCCcceecCHHHHHHhcCC
Confidence 6789999999999999998
No 20
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=99.25 E-value=1.3e-13 Score=134.05 Aligned_cols=91 Identities=25% Similarity=0.522 Sum_probs=76.5
Q ss_pred ChHHHHHHHHhhhcchhh-hhhhhhHhhhhccccccccc--cccCHHHHHHhcCcccchhhhhhhcccCCceeecccCCC
Q psy11420 221 SWEEGQSVFEELLLDADW-AMNAGNWMWLSASAFFHQFF--RVYSPVAFGKKTDKFELLLDADWAMNAGNWMWLSASAFF 297 (315)
Q Consensus 221 ~W~~G~~~f~~~liD~d~-a~n~~~W~~~ag~g~~~~~~--r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~w~~~s~~~~~ 297 (315)
.|+.|.+.|. +||+-+ +++.+|||+.........++ .+..+|+.|++++ ...+||+|+++|++||||++|++..
T Consensus 283 aW~~G~TG~P--~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~g~~~F-~~~llD~d~a~n~g~wqw~aG~g~d 359 (440)
T 2e0i_A 283 AWKEGRTGYP--IIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFVDWRWGERYF-ATKLVDYDPAINNGNWQWIASTGVD 359 (440)
T ss_dssp HHHHTCSSCH--HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHH-HHHCTTCCHHHHHHHHHHHTTSSSC
T ss_pred HHHhCCCCCH--HHHHHHHHHHHHcchhHHHHHHHHHHHHHHhCCCccHHHHHH-HHHcccCCccccHHHHHHHhCcCCC
Confidence 4666777777 999998 89999999986643322221 5778999999999 6799999999999999999998775
Q ss_pred CCcccccChhhhhhhcCC
Q psy11420 298 HQFFRVYSPVAFGKKTDK 315 (315)
Q Consensus 298 ~~~~~~~~p~~~~~~~d~ 315 (315)
. ++|+|||++|++|+||
T Consensus 360 ~-~~RifNp~~q~~kfDp 376 (440)
T 2e0i_A 360 Y-MFRVFNPWKQQEKFDP 376 (440)
T ss_dssp C-SCCCCCHHHHHHHHCT
T ss_pred C-CCCccCHHHHHHHhCC
Confidence 4 9999999999999998
No 21
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=99.24 E-value=1.5e-13 Score=136.80 Aligned_cols=93 Identities=48% Similarity=0.862 Sum_probs=78.9
Q ss_pred CChHHHHHHHHhhhcchhh-hhhhhhHhhhhcccccccc---ccccCHHHHHHhcCcccchhhhhhhcccCCceeecccC
Q psy11420 220 LSWEEGQSVFEELLLDADW-AMNAGNWMWLSASAFFHQF---FRVYSPVAFGKKTDKFELLLDADWAMNAGNWMWLSASA 295 (315)
Q Consensus 220 ~~W~~G~~~f~~~liD~d~-a~n~~~W~~~ag~g~~~~~---~r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~w~~~s~~~ 295 (315)
-.|+.|.+.|. +||+-+ +++..|||+.........+ ..+..+|+.|.+++ +..+||+|+++|++||||++|++
T Consensus 361 ~aW~~G~TG~P--~VDAaMrqL~~tG~mHnr~Rm~vASFL~kg~L~idWr~G~~~F-~~~LiD~D~a~n~g~Wqw~aG~g 437 (543)
T 2wq7_A 361 EAWTHGRTGYP--FIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVF-EQLLLDQDWALNAGNWMWLSASA 437 (543)
T ss_dssp HHHHTTCSSCH--HHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCCCHHHHHHHH-HHHCTTCCHHHHHHHHHHHTTSS
T ss_pred HHHHcCCCCCH--HHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhCCCCchHHHHH-HHHhccCCcccCHHHHHHHhcCC
Confidence 35667777777 999999 8999999997664332211 15789999999999 78999999999999999999998
Q ss_pred CCCCcccccChhhhhhhcCC
Q psy11420 296 FFHQFFRVYSPVAFGKKTDK 315 (315)
Q Consensus 296 ~~~~~~~~~~p~~~~~~~d~ 315 (315)
+..+++|+|||++|++||||
T Consensus 438 ~D~~~~RifNP~~q~~kfDp 457 (543)
T 2wq7_A 438 FFHQYFRVYSPVAFGKKTDP 457 (543)
T ss_dssp SCCCTTCCCCTTTGGGGTCT
T ss_pred CcCccccccCHHHHhhhcCC
Confidence 86669999999999999998
No 22
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=99.21 E-value=2.3e-13 Score=131.56 Aligned_cols=93 Identities=29% Similarity=0.474 Sum_probs=77.8
Q ss_pred CChHHHHHHHHhhhcchhh-hhhhhhHhhhhccccccccc--cccCHHHHHHhcCcccchhhhhhhcccCCceeecccCC
Q psy11420 220 LSWEEGQSVFEELLLDADW-AMNAGNWMWLSASAFFHQFF--RVYSPVAFGKKTDKFELLLDADWAMNAGNWMWLSASAF 296 (315)
Q Consensus 220 ~~W~~G~~~f~~~liD~d~-a~n~~~W~~~ag~g~~~~~~--r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~w~~~s~~~~ 296 (315)
-.|+.|.+.|. +||+-+ +++.+|||+.........++ .+..+|+.|++++ ...+||+|+++|++||||++|++.
T Consensus 283 ~~w~~G~TG~P--~vDAaMrqL~~tG~mHnr~Rm~vasfl~k~L~idWr~g~~~F-~~~llD~d~a~n~g~wqw~aG~g~ 359 (420)
T 2j07_A 283 QAWYEGKTGVP--LVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAF-RHLLLDGDRAVNLQGWQWAGGLGV 359 (420)
T ss_dssp HHHHTTCSSCH--HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHH-HHHCTTCCHHHHHHHHHHHTTSSG
T ss_pred HHHHcCCCCcH--hHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCCCChHHHHHH-HHHhhcCCccccHHHHHHHHccCC
Confidence 34566777777 999998 89999999986643322221 5778999999999 679999999999999999999865
Q ss_pred -CCCcccccChhhhhhhcCC
Q psy11420 297 -FHQFFRVYSPVAFGKKTDK 315 (315)
Q Consensus 297 -~~~~~~~~~p~~~~~~~d~ 315 (315)
..+++|+|||++|++|+||
T Consensus 360 d~~pyfR~fNp~~q~~kfDp 379 (420)
T 2j07_A 360 DAAPYFRVFNPVLQGERHDP 379 (420)
T ss_dssp GGCCTTCCCCHHHHHHHHST
T ss_pred CCCCCceeeCHHHHHHHhCC
Confidence 6789999999999999998
No 23
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=99.19 E-value=3.4e-13 Score=132.59 Aligned_cols=91 Identities=24% Similarity=0.520 Sum_probs=75.1
Q ss_pred ChHHHHHHHHhhhcchhh-hhhhhhHhhhhccccccccc--cccCHHHHHHhcCcccchhhhhhhcccCCceeecccCC-
Q psy11420 221 SWEEGQSVFEELLLDADW-AMNAGNWMWLSASAFFHQFF--RVYSPVAFGKKTDKFELLLDADWAMNAGNWMWLSASAF- 296 (315)
Q Consensus 221 ~W~~G~~~f~~~liD~d~-a~n~~~W~~~ag~g~~~~~~--r~~~p~~~~~~~dp~g~~Ir~~w~~~~~~w~~~s~~~~- 296 (315)
.|+.|.+.|. +||+-+ +++.+|||+.........++ .+..+|+.|.+++ ...+||+|+++|++||||++|+|.
T Consensus 323 aW~~G~TG~P--~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~g~~~F-~~~llD~d~a~n~g~wqw~ag~G~d 399 (484)
T 1owl_A 323 AWTQAQTGYP--IVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFF-MQHLVDGDLAANNGGWQWSASSGMD 399 (484)
T ss_dssp HHHTTCSSCH--HHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCTHHHHHHH-HTTCTTCCHHHHHHHHHHTTTCSSS
T ss_pred HHHcCCCCCh--hHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCCCCcHHHHHH-HHhcccCCcccCHHHHHHhhCcCCC
Confidence 4556666666 999998 89999999986643322221 5678999999999 789999999999999999999865
Q ss_pred CCCcccccChhhhhhhcCC
Q psy11420 297 FHQFFRVYSPVAFGKKTDK 315 (315)
Q Consensus 297 ~~~~~~~~~p~~~~~~~d~ 315 (315)
..+ +|+|||++|++||||
T Consensus 400 ~~p-fRifNp~~q~~kfDp 417 (484)
T 1owl_A 400 PKP-LRIFNPASQAKKFDA 417 (484)
T ss_dssp CCC-CCCCCHHHHHHHHST
T ss_pred CCc-cceeCHHHHhhhcCC
Confidence 455 999999999999998
No 24
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=98.83 E-value=3.2e-11 Score=118.49 Aligned_cols=92 Identities=14% Similarity=0.047 Sum_probs=75.5
Q ss_pred cCCChHHHHHHHHhhhcchhh-hhhhhhHhhhhccccccccccccCHH-HHHHhcCcccc-------hhhhhhhcccCCc
Q psy11420 218 LYLSWEEGQSVFEELLLDADW-AMNAGNWMWLSASAFFHQFFRVYSPV-AFGKKTDKFEL-------LLDADWAMNAGNW 288 (315)
Q Consensus 218 l~~~W~~G~~~f~~~liD~d~-a~n~~~W~~~ag~g~~~~~~r~~~p~-~~~~~~dp~g~-------~Ir~~w~~~~~~w 288 (315)
+.-.|+.|.+.|. +||+-+ +++.+|||+.....+... .+ .+| +.+++++ ... |||+|.+.|++||
T Consensus 364 ~~~aw~~G~TG~P--~VDAaMrqL~~tG~mHnr~RM~vak--~L-idW~~~ge~~f-~~~l~Lnd~y~iD~d~ann~ggw 437 (482)
T 2xry_A 364 TLEEFEAGKTHDP--LWNASQMELLSTGKMHGYTRMYWAK--KI-LEWSESPEKAL-EIAICLNDRYELDGRDPNGYAGI 437 (482)
T ss_dssp CHHHHHTTCSSCH--HHHHHHHHHHHHSCCCHHHHHHHHH--HH-HHTSSSHHHHH-HHHHHHHHHHCTTCSSHHHHHHH
T ss_pred HHHHHHhCCcCCH--HHHHHHHHHHHhCccccHHHHHHHc--cc-CCCCchHHHHH-HHHHHhcCceeccCCCccchhHh
Confidence 3557889999999 999999 899999999877544222 25 788 7888888 455 6999999999999
Q ss_pred eeecccCCC-----CCcc---cccChhhhhhhcCC
Q psy11420 289 MWLSASAFF-----HQFF---RVYSPVAFGKKTDK 315 (315)
Q Consensus 289 ~~~s~~~~~-----~~~~---~~~~p~~~~~~~d~ 315 (315)
||++|+++. .|+| |+|||+.|++||||
T Consensus 438 qw~agG~~~~~~~~~p~fg~~R~fnp~~q~~kfD~ 472 (482)
T 2xry_A 438 AWSIGGVHDRAWGEREVTGKIRYMSYEGCKRKFDV 472 (482)
T ss_dssp HHHHHCTTSCCCCCBTTTBTSCCCCHHHHHHHSCH
T ss_pred hhhhcCCCCCCcccccccccceeechhHhhhhcCH
Confidence 999985443 3677 99999999999997
No 25
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=98.71 E-value=1.1e-10 Score=115.03 Aligned_cols=90 Identities=14% Similarity=0.083 Sum_probs=73.0
Q ss_pred CChHHHHHHHHhhhcchhh-hhhhhhHhhhhccccccccccccCHHHHHHh-------cCcccc-hhhhhhhcccCCcee
Q psy11420 220 LSWEEGQSVFEELLLDADW-AMNAGNWMWLSASAFFHQFFRVYSPVAFGKK-------TDKFEL-LLDADWAMNAGNWMW 290 (315)
Q Consensus 220 ~~W~~G~~~f~~~liD~d~-a~n~~~W~~~ag~g~~~~~~r~~~p~~~~~~-------~dp~g~-~Ir~~w~~~~~~w~~ 290 (315)
-.|+.|.+.|. +||+-+ .++..|||+.-....... .+ .+|+.|.+ |+ ... +||+|+++|++||||
T Consensus 366 ~~w~~G~TG~p--~vDA~mrqL~~tG~mHnr~Rm~~ak--~l-l~W~~g~~~~~~~a~~f-~~~~llD~d~~~n~~~wqw 439 (506)
T 3umv_A 366 EQLENAKTHDP--LWNASQLEMVHHGKMHGFMRMYWAK--KI-LEWTSGPEEALSTAIYL-NDKYEIDGRDPSGYVGCMW 439 (506)
T ss_dssp HHHHTTCSSCH--HHHHHHHHHHHHSCCCHHHHHHHHH--HH-HHTSSSHHHHHHHHHHH-HHHHCTTCSSHHHHHHHHH
T ss_pred HHHHcCCCCCH--HHHHHHHHHHHhCchhHHHHHHHHH--hh-ccCCCCHHHHHHHHHHH-hhccCcccCccccccceeE
Confidence 36888888888 999998 899999999877543222 35 88988887 77 455 799999999999999
Q ss_pred ec-cc---CC-CCCcc---cccChhhhhhhcCC
Q psy11420 291 LS-AS---AF-FHQFF---RVYSPVAFGKKTDK 315 (315)
Q Consensus 291 ~s-~~---~~-~~~~~---~~~~p~~~~~~~d~ 315 (315)
++ |+ ++ ..++| |+|||++|++|+||
T Consensus 440 ~a~G~~~~g~~~~p~fg~iR~~np~~q~~k~Dp 472 (506)
T 3umv_A 440 SICGLHDQGWKERPVFGKIRYMNYAGCKRKFDV 472 (506)
T ss_dssp HHHCTTSCCCCCBTTTBTSCCCCHHHHHHHSCH
T ss_pred EecCCCCCCCccccccCcceeECHHHHHHHhCC
Confidence 99 44 43 34556 99999999999997
No 26
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=96.06 E-value=0.00023 Score=69.92 Aligned_cols=77 Identities=9% Similarity=0.038 Sum_probs=60.1
Q ss_pred hHHHHHHHHhhhcchhh-hhhhhhHhhhhcccccccc--ccccCHHHHHHhcCcccchhhh-hhh---cccCCceeeccc
Q psy11420 222 WEEGQSVFEELLLDADW-AMNAGNWMWLSASAFFHQF--FRVYSPVAFGKKTDKFELLLDA-DWA---MNAGNWMWLSAS 294 (315)
Q Consensus 222 W~~G~~~f~~~liD~d~-a~n~~~W~~~ag~g~~~~~--~r~~~p~~~~~~~dp~g~~Ir~-~w~---~~~~~w~~~s~~ 294 (315)
|..|.+.|. +||+-+ .++..|||+.........+ ..+..+|++|.+++ ...|||+ ||+ .+.|+|||++|+
T Consensus 351 ~w~G~TG~P--~VDA~MRqL~~TGwmHnr~RmmVasfl~k~L~idWr~G~~wF-~~~LiD~~~Wv~~~N~~Gm~q~a~Gg 427 (522)
T 3zxs_A 351 YWGKPTRMA--CLSAAVAQTRDLAYAHHIQRLMVTGNFALLAGVDPAEVHEWY-LSVYIDALEWVEAPNTIGMSQFADHG 427 (522)
T ss_dssp GGTCCCSCH--HHHHHHHHHHHHSCCCHHHHHHTHHHHHHHTTBCHHHHHHHH-HHHCTTCCHHHHHHHHHTTTTCCSSS
T ss_pred HhcCCCCCH--HHHHHHHHHHHHhchhHHHHHHHHHHHHHHcCCChHHHHHHH-HHHhcchhhhhhccccccchheecCC
Confidence 448889999 999998 8999999997664322222 25778999999999 7899999 886 356999999988
Q ss_pred CC-CCCcc
Q psy11420 295 AF-FHQFF 301 (315)
Q Consensus 295 ~~-~~~~~ 301 (315)
++ .-||+
T Consensus 428 ~~~~KPY~ 435 (522)
T 3zxs_A 428 LLGSKPYV 435 (522)
T ss_dssp TTCSSCCC
T ss_pred ccCCCCCC
Confidence 65 34444
No 27
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed RNA POL iron, iron-sulfur, metal-binding, nucleotidyltransferase; HET: DNA MSE EPE; 1.54A {Saccharomyces cerevisiae}
Probab=40.30 E-value=47 Score=27.95 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHHhcccCchhHHHHHHHhhhhccCCChHHHHHHHHhhhc--chhh--hhhhhhHhhhhc
Q psy11420 185 YPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLL--DADW--AMNAGNWMWLSA 250 (315)
Q Consensus 185 ~p~vDA~mrqL~~tG~mhnr~R~~vasfl~~~~l~~~W~~G~~~f~~~li--D~d~--a~n~~~W~~~ag 250 (315)
-||+-+.+..|.+..-+.|.+|+.++.||. ..+++=.+...+|...|. +.|. -.-..+..+..|
T Consensus 19 PpCM~~l~~~Lr~~~hL~h~gR~ql~lFLk--giGls~ee~l~f~r~~F~k~~~d~F~K~y~Y~IrH~yG 86 (194)
T 3lgb_A 19 PLCIKNLMEGLKKNHHLRYYGRQQLSLFLK--GIGLSADEALKFWSEAFTNMTMEKFNKEYRYSFRHNYG 86 (194)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHH--HTTCCHHHHHHHHHHHSTTSCHHHHHHHTHHHHHHHTT
T ss_pred cHHHHHHHHHHHcCCCCCchhHHHHHHHHH--hCCCCHHHHHHHHHHHcccCChhhhccceeeeeeeecC
Confidence 467888889999999999999999999998 489999999998887653 4442 233445566665
Done!