RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11420
(315 letters)
>d1dnpa1 a.99.1.1 (A:201-469) C-terminal domain of DNA photolyase
{Escherichia coli [TaxId: 562]}
Length = 269
Score = 117 bits (293), Expect = 9e-32
Identities = 70/215 (32%), Positives = 102/215 (47%), Gaps = 7/215 (3%)
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
P E A+ +L + N ++E+ P T+ LS L G LS R H L
Sbjct: 1 PVEEKAAIAQLRQFCQNG--AGEYEQQRDFPA--VEGTSRLSASLATGGLSPRQCLHRLL 56
Query: 120 KILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICC-QVDWDTNEKYLEAW 178
L ++ WREFY + + P+ K + +V W +N +L+AW
Sbjct: 57 AEQPQALDGGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAW 116
Query: 179 SHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADW 238
GKTGYP +DA MRQL GW+H+ R A FL + DL + W EG+ F L+D D
Sbjct: 117 QEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVK-DLLIDWREGERYFMSQLIDGDL 175
Query: 239 AMNAGNWMWLSASA-FFHQFFRVYSPVAFGKKTDK 272
A N G W W +++ +FR+++P G+K D
Sbjct: 176 AANNGGWQWAASTGTDAAPYFRIFNPTTQGEKFDH 210
>d1np7a1 a.99.1.1 (A:205-483) Cryptochrome C-terminal domain
{Synechocystis sp., pcc 6803 [TaxId: 1143]}
Length = 279
Score = 116 bits (290), Expect = 4e-31
Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 4/223 (1%)
Query: 50 DESSIPLCKFPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCL 109
D S+ F GGET L RL+ + + ++ +++ + ++ SP+L GCL
Sbjct: 1 DHRSVL--AFQGGETAGLARLQDYFWHGDRLKDYKETRNGMVGAD-YSSKFSPWLALGCL 57
Query: 110 SVRLFYHELKKILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWD 169
S R Y E+K+ L+ ++ WR+F+ V N +G + W
Sbjct: 58 SPRFIYQEVKRYEQERVSNDSTHWLIFELLWRDFFRFVAQKYGNKLFNRGGLLNKNFPWQ 117
Query: 170 TNEKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVF 229
++ E W G+TGYP +DA MR+L L G++ + R VA FL + + W G F
Sbjct: 118 EDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNL-GIDWRWGAEWF 176
Query: 230 EELLLDADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDK 272
E L+D D N GNW + + + FR ++ ++ D
Sbjct: 177 ESCLIDYDVCSNWGNWNYTAGIGNDARDFRYFNIPKQSQQYDP 219
>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase
{Synechococcus elongatus [TaxId: 32046]}
Length = 271
Score = 101 bits (252), Expect = 7e-26
Identities = 68/218 (31%), Positives = 102/218 (46%), Gaps = 8/218 (3%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
GET A+ RL++ + ++ P E T+ LSP LKFG + +R +
Sbjct: 2 VEPGETAAIARLQEFCDRA--IADYDPQRNFPA--EAGTSGLSPALKFGAIGIRQAWQAA 57
Query: 119 KKILATGPHAKPPVSLL---GQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYL 175
A + S+ ++ WREFY P+ + Q W+ E
Sbjct: 58 SAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALF 117
Query: 176 EAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLD 235
AW+ +TGYP +DA MRQL GW+H+ R VA FLT+ DL + W G+ F + L+D
Sbjct: 118 TAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTK-DLIIDWRRGEQFFMQHLVD 176
Query: 236 ADWAMNAGNWMWLSASAFFHQFFRVYSPVAFGKKTDKF 273
D A N G W W ++S + R+++P + KK D
Sbjct: 177 GDLAANNGGWQWSASSGMDPKPLRIFNPASQAKKFDAT 214
>d1u3da1 a.99.1.1 (A:198-497) Cryptochrome C-terminal domain {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 300
Score = 96.9 bits (240), Expect = 6e-24
Identities = 59/221 (26%), Positives = 95/221 (42%), Gaps = 12/221 (5%)
Query: 59 FPGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHEL 118
+ G + K L + + ++ K + +T+ LSP+L FG +SVR +H +
Sbjct: 16 WSPGWSNGDKALTTFINGP--LLEYSKNRRKAD--SATTSFLSPHLHFGEVSVRKVFHLV 71
Query: 119 KKILATGPHAKPPV------SLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNE 172
+ + L I RE+ + + P + W +E
Sbjct: 72 RIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDE 131
Query: 173 KYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEEL 232
Y +AW G+TGYP +DA MR+L GW+H R V+ F + L L W G F +
Sbjct: 132 NYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK-VLQLPWRWGMKYFWDT 190
Query: 233 LLDADWAMNAGNWMWLSASAFFHQ-FFRVYSPVAFGKKTDK 272
LLDAD +A W +++ + + F R+ +P G K D
Sbjct: 191 LLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDP 231
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase
{Thermus thermophilus [TaxId: 274]}
Length = 234
Score = 92.7 bits (229), Expect = 7e-23
Identities = 60/214 (28%), Positives = 92/214 (42%), Gaps = 11/214 (5%)
Query: 60 PGGETEALKRLEKSLANKEWVRKFEKPNTAPNSLEPSTTVLSPYLKFGCLSVRLFYHELK 119
GE AL L L K + ++ + + + LSPY G LS RL E +
Sbjct: 5 EPGEEAALAGLRAFLEAK--LPRYAEERDRLD--GEGGSRLSPYFALGVLSPRLAAWEAE 60
Query: 120 KILATGPHAKPPVSLLGQIYWREFYYVVGSDTPNFDKMKGNKICCQVDWDTNEKYLEAWS 179
+ + + ++ WR+F Y + P + + W +E +AW
Sbjct: 61 R-----RGGEGARKWVAELLWRDFSYHLLYHFPWMAERPLDPRFQAFPWQEDEALFQAWY 115
Query: 180 HGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWA 239
GKTG P +DA MR+L G++ + AR A F + L W+ + F LLLD D A
Sbjct: 116 EGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHL-LLPWKRCEEAFRHLLLDGDRA 174
Query: 240 MNAGNWMWLS-ASAFFHQFFRVYSPVAFGKKTDK 272
+N W W +FRV++PV G++ D
Sbjct: 175 VNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDP 208
>d2bcoa1 c.56.5.7 (A:4-342) Succinylglutamate desuccinylase AstE
{Vibrio parahaemolyticus [TaxId: 670]}
Length = 339
Score = 32.3 bits (73), Expect = 0.070
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 3/81 (3%)
Query: 202 HHLARHAVACFLTRGDLYLSWEEGQSVFEELLLDADWAMNAGNWMWLSASAFFHQFFRVY 261
+ A + A LT +L G++ + L N + +RV
Sbjct: 202 WYSAENYSAQALTM-ELGRVARIGENALDRLTAFDLALRNLIAEAQPEHLSKPCIKYRVS 260
Query: 262 SPVAFGKKTDKFELLLDADWA 282
+ + D F+ + D +
Sbjct: 261 RTIV--RLHDDFDFMFDDNVE 279
>d1rhya1 d.14.1.9 (A:2-93) Imidazole glycerol phosphate dehydratase
{Fungus (Filobasidiella neoformans) [TaxId: 5207]}
Length = 92
Score = 28.6 bits (64), Expect = 0.28
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 10/78 (12%)
Query: 161 KICCQVDWDTNEKYLEAWSHGKTGYPFIDAIMRQL-RLEGWIHHLARHAVACFLTRGDLY 219
I C +D D E + TG F+D + L + G L D +
Sbjct: 15 HISCTIDLDHIPGVTEQKINVSTGIGFLDHMFTALAKHGGMSLQL----QCKGDLHIDDH 70
Query: 220 LSWEE-----GQSVFEEL 232
+ E+ G++ + L
Sbjct: 71 HTAEDCALALGEAFKKAL 88
>d1gs0a1 a.41.1.1 (A:207-340) Domain of poly(ADP-ribose)
polymerase {Mouse (Mus musculus) [TaxId: 10090]}
Length = 134
Score = 27.8 bits (62), Expect = 0.80
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 43 TMKEMGLDESSIPLCKFPGGE----TEALKRLEKSLANKEWVRKFEK 85
M EM D PL K + ++LK++E + + R +
Sbjct: 24 MMIEMKYDTKRAPLGKLTVAQIKAGYQSLKKIEDCIRAGQHGRALVE 70
>d1efya1 a.41.1.1 (A:662-796) Domain of poly(ADP-ribose)
polymerase {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 135
Score = 27.8 bits (62), Expect = 0.87
Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 43 TMKEMGLDESSIPLCKFPGGE----TEALKRLEKSLANKEWVRKFEK 85
M E +D +PL K + L +++++++ +
Sbjct: 24 AMVEFEIDLQKMPLGKLSKRQIQSAYSILNEVQQAVSDGGSESQILD 70
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus
[TaxId: 32046]}
Length = 202
Score = 26.2 bits (56), Expect = 5.1
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 1 MTYQKLVSVLESLPKPKPADDAPTSL----PRECQGILHPDEHLVPTMKEMGLD 50
Y ++ PKP P PT L P + I +PT+K++G D
Sbjct: 145 SVYGPFWKNWQAQPKPTPVA-TPTELVDLSPEQLTAIAPLLLSELPTLKQLGFD 197
>d1w25a3 d.58.29.2 (A:294-455) Response regulator PleD, C-terminal
domain {Caulobacter crescentus [TaxId: 155892]}
Length = 162
Score = 25.9 bits (55), Expect = 5.4
Identities = 18/145 (12%), Positives = 36/145 (24%), Gaps = 13/145 (8%)
Query: 107 GCLSVRLFYHELKKILATGPHAKPPVSLL----GQIYWREFYYVVGSDTPNFDKMKGNKI 162
G + R +L ++ PVS L + +
Sbjct: 3 GLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLA 62
Query: 163 CCQVDWDTN-------EKYLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTR 215
D + + + I + + R + ++
Sbjct: 63 SNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHVSGSPFTVAHGREMLNVTISI 122
Query: 216 GDLYLSWEEGQSVFEELLLDADWAM 240
G + + EG + E LL AD +
Sbjct: 123 G-VSATAGEGDT-PEALLKRADEGV 145
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 25.4 bits (55), Expect = 8.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 54 IPLCKFPGGETEALKRLEKSLANK 77
IP+ K GE E L RLE+ L +
Sbjct: 1 IPVSKLLEGEREKLLRLEEELHKR 24
>d1usha2 d.159.1.2 (A:26-362) 5'-nucleotidase (syn. UDP-sugar
hydrolase), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 337
Score = 25.3 bits (54), Expect = 9.8
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 9/93 (9%)
Query: 174 YLEAWSHGKTGYPFIDAIMRQLRLEGWIHHLARHAVACFLTRGDL-----YLSWEEGQSV 228
+ +G+ G ++ +R E A L+ GD+ ++ +
Sbjct: 20 HFWRNEYGEYGLAAQKTLVDGIRKE----VAAEGGSVLLLSGGDINTGVPESDLQDAEPD 75
Query: 229 FEELLLDADWAMNAGNWMWLSASAFFHQFFRVY 261
F + L AM GN + + Q +
Sbjct: 76 FRGMNLVGYDAMAIGNHEFDNPLTVLRQQEKWA 108
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.446
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,314,330
Number of extensions: 62896
Number of successful extensions: 169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 19
Length of query: 315
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,240,546
Effective search space: 285325580
Effective search space used: 285325580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)