Your job contains 1 sequence.
>psy11421
MSFHAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYP
ELLTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEY
IAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEV
RCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL
RGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYK
INCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDG
ITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPI
CNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVV
TAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELA
NYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNT
KGNKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEK
AIKLNIKILDEKNFVKIVKGFSTETKI
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy11421
(687 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|CBU_0542 - symbol:CBU_0542 "DNA ligase, NAD-depe... 1419 3.2e-145 1
UNIPROTKB|P15042 - symbol:ligA species:83333 "Escherichia... 1290 1.5e-131 1
UNIPROTKB|Q9KTD1 - symbol:ligA "DNA ligase" species:24327... 1282 1.0e-130 1
TIGR_CMR|VC_0971 - symbol:VC_0971 "DNA ligase" species:68... 1282 1.0e-130 1
TIGR_CMR|SO_2896 - symbol:SO_2896 "DNA ligase, NAD-depend... 1256 5.9e-128 1
TIGR_CMR|CHY_1100 - symbol:CHY_1100 "DNA ligase, NAD-depe... 1251 2.0e-127 1
TIGR_CMR|GSU_0890 - symbol:GSU_0890 "DNA ligase, NAD-depe... 1225 1.1e-124 1
TIGR_CMR|BA_0306 - symbol:BA_0306 "DNA ligase, NAD-depend... 1118 2.5e-113 1
TIGR_CMR|DET_0596 - symbol:DET_0596 "DNA ligase, NAD-depe... 1066 8.1e-108 1
UNIPROTKB|P63973 - symbol:ligA "DNA ligase" species:1773 ... 1005 2.3e-101 1
TIGR_CMR|ECH_0301 - symbol:ECH_0301 "DNA ligase, NAD-depe... 1004 3.0e-101 1
TIGR_CMR|SPO_1680 - symbol:SPO_1680 "DNA ligase, NAD-depe... 856 4.2e-98 2
TIGR_CMR|CJE_0689 - symbol:CJE_0689 "DNA ligase, NAD-depe... 915 8.1e-92 1
TIGR_CMR|APH_0138 - symbol:APH_0138 "DNA ligase, NAD-depe... 904 1.2e-90 1
TIGR_CMR|NSE_0500 - symbol:NSE_0500 "DNA ligase, NAD-depe... 875 1.4e-87 1
DICTYBASE|DDB_G0282299 - symbol:DDB_G0282299 "DNA ligase"... 341 6.9e-48 3
MGI|MGI:97891 - symbol:Rfc1 "replication factor C (activa... 162 6.2e-08 1
UNIPROTKB|P35251 - symbol:RFC1 "Replication factor C subu... 166 2.1e-07 2
UNIPROTKB|F1NEP9 - symbol:RFC1 "Uncharacterized protein" ... 156 2.8e-07 1
UNIPROTKB|E2QW76 - symbol:RFC1 "Uncharacterized protein" ... 156 2.8e-07 1
UNIPROTKB|E1C339 - symbol:RFC1 "Uncharacterized protein" ... 156 2.8e-07 1
RGD|620619 - symbol:Rfc1 "replication factor C (activator... 148 1.9e-06 2
UNIPROTKB|F1S4I7 - symbol:RFC1 "Uncharacterized protein" ... 157 2.4e-06 2
ZFIN|ZDB-GENE-070410-99 - symbol:rfc1 "replication factor... 144 5.5e-06 1
FB|FBgn0004913 - symbol:Gnf1 "Germ line transcription fac... 134 5.5e-05 1
DICTYBASE|DDB_G0285961 - symbol:rfc1 "replication factor ... 145 0.00014 2
SGD|S000005743 - symbol:RFC1 "Subunit of heteropentameric... 127 0.00026 1
UNIPROTKB|P25772 - symbol:ligB species:83333 "Escherichia... 117 0.00038 3
>TIGR_CMR|CBU_0542 [details] [associations]
symbol:CBU_0542 "DNA ligase, NAD-dependent" species:227377
"Coxiella burnetii RSA 493" [GO:0003911 "DNA ligase (NAD+)
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR003583 InterPro:IPR004149 InterPro:IPR004150
InterPro:IPR013839 InterPro:IPR013840 InterPro:IPR018239
Pfam:PF01653 Pfam:PF03119 Pfam:PF03120 PIRSF:PIRSF001604
PROSITE:PS01055 PROSITE:PS01056 SMART:SM00278 SMART:SM00532
InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 EMBL:AE016828 GenomeReviews:AE016828_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 KO:K01972 GO:GO:0003911 PANTHER:PTHR11107:SF5
TIGRFAMs:TIGR00575 HOGENOM:HOG000218458 OMA:ENVRTIR HSSP:P26996
RefSeq:NP_819574.2 ProteinModelPortal:Q83DZ6 PRIDE:Q83DZ6
GeneID:1208427 KEGG:cbu:CBU_0542 PATRIC:17929781
ProtClustDB:CLSK2516812 BioCyc:CBUR227377:GJ7S-545-MONOMER
Uniprot:Q83DZ6
Length = 673
Score = 1419 (504.6 bits), Expect = 3.2e-145, P = 3.2e-145
Identities = 279/669 (41%), Positives = 425/669 (63%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+K+ R+ L++E++ HN YY+ P I D+ YD+L EL+K+E+KYPE +T S TQ
Sbjct: 8 AKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELEKLEKKYPETITPSSPTQR 67
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + + VHH M+SLDN F ++ + F+KRI LKL K EY+ E K DG+A+
Sbjct: 68 VGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRLKLDKPFEYVCEPKMDGVAL 127
Query: 132 NLRYEYGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L +A+TRGD PL L PEL+E+R EVL+ ++ F
Sbjct: 128 SLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPREGF 187
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
K N+ G K F NPRNAA+G LRQL+P+I + L F+ + +G L+G + P +H +
Sbjct: 188 AKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDFPKNHCD 247
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
+L W++ G+ + E V+ G+ +++Y+ + R +P++IDG+V K+N L Q +LG
Sbjct: 248 VLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQAELG 307
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F SRAPR+A+AYKF ++E +T +KAI Q+GRTG +TPVA L+PV + G+T++ ATLHN
Sbjct: 308 FVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSNATLHNF 367
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
E+YRK++++GDTV+V R+G+VIP++ IL+ RP +K+ KIP+ CP+C++++I E
Sbjct: 368 DELYRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPSRCPVCHAEVIKPEGE 427
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC G + C AQ + ++HF+SR+A++I GLG K++E + ++ +Y++
Sbjct: 428 AVARCVGG-LYCRAQLRESIKHFASRRALDIEGLGDKLVELFIQEKLIKDITGIYQLKKS 486
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L R+ K A N+L AI+KSK TT RF+YALGIR VG+TTA+ LA +F L+ + K
Sbjct: 487 AITALPRMGEKSAENLLTAIEKSKKTTLPRFLYALGIRGVGDTTARTLARHFHELDLLMK 546
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGN-KNYLKEK 610
A+ E L I IG + F +Q + LI++L +G++W P K K+ + K
Sbjct: 547 ASIETLQEIRDIGPVAAENIHAFFHQKNNAELINKLIHLGVHW---PQEKAVVKSEIAGK 603
Query: 611 IFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 670
FV TG+L + R EA IE GGK + +SKNT+Y++ G+ PG K EKA L I ++D
Sbjct: 604 TFVLTGALKSLTREEAEEKIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLID 663
Query: 671 EKNFVKIVK 679
E+ F+K++K
Sbjct: 664 EEAFLKLLK 672
>UNIPROTKB|P15042 [details] [associations]
symbol:ligA species:83333 "Escherichia coli K-12"
[GO:0003911 "DNA ligase (NAD+) activity" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] HAMAP:MF_01588
InterPro:IPR001679 InterPro:IPR003583 InterPro:IPR004149
InterPro:IPR004150 InterPro:IPR013839 InterPro:IPR013840
InterPro:IPR018239 Pfam:PF01653 Pfam:PF03119 Pfam:PF03120
PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056 SMART:SM00278
SMART:SM00532 InterPro:IPR001357 Pfam:PF00533 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 EMBL:U74650 InterPro:IPR010994
SUPFAM:SSF47781 eggNOG:COG0272 HOGENOM:HOG000218459 KO:K01972
GO:GO:0003911 PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575 OMA:ENVRTIR
ProtClustDB:PRK07956 EMBL:M30255 EMBL:M24278 PIR:B65015
RefSeq:NP_416906.1 RefSeq:YP_490647.1 PDB:2OWO PDB:4GLX PDBsum:2OWO
PDBsum:4GLX ProteinModelPortal:P15042 SMR:P15042 DIP:DIP-10098N
IntAct:P15042 PaxDb:P15042 PRIDE:P15042
EnsemblBacteria:EBESCT00000002129 EnsemblBacteria:EBESCT00000015370
GeneID:12930678 GeneID:946885 KEGG:ecj:Y75_p2372 KEGG:eco:b2411
PATRIC:32120205 EchoBASE:EB0529 EcoGene:EG10534
BioCyc:EcoCyc:EG10534-MONOMER BioCyc:ECOL316407:JW2403-MONOMER
BioCyc:MetaCyc:EG10534-MONOMER EvolutionaryTrace:P15042
Genevestigator:P15042 Uniprot:P15042
Length = 671
Score = 1290 (459.2 bits), Expect = 1.5e-131, P = 1.5e-131
Identities = 269/665 (40%), Positives = 402/665 (60%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGD PL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP---NTKGNKNYLKEKIFV 613
L +P +G F + +R +IS+L G++W P N + + K V
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHW-PAPIVINAEEIDSPFAGKTVV 604
Query: 614 FTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 673
TGSL R++A + LG KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 605 LTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAE 664
Query: 674 FVKIV 678
++++
Sbjct: 665 MLRLL 669
>UNIPROTKB|Q9KTD1 [details] [associations]
symbol:ligA "DNA ligase" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0003911 "DNA ligase (NAD+) activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006266 "DNA ligation" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
HAMAP:MF_01588 InterPro:IPR001679 InterPro:IPR003583
InterPro:IPR004149 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 InterPro:IPR018239 Pfam:PF01653 Pfam:PF03119
Pfam:PF03120 PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056
SMART:SM00278 SMART:SM00532 InterPro:IPR001357 Pfam:PF00533
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 KO:K01972 GO:GO:0003911 PANTHER:PTHR11107:SF5
TIGRFAMs:TIGR00575 HSSP:O87703 OMA:ENVRTIR ProtClustDB:PRK07956
PIR:F82258 RefSeq:NP_230618.1 ProteinModelPortal:Q9KTD1 SMR:Q9KTD1
GeneID:2614224 KEGG:vch:VC0971 PATRIC:20081040 Uniprot:Q9KTD1
Length = 669
Score = 1282 (456.3 bits), Expect = 1.0e-130, P = 1.0e-130
Identities = 274/669 (40%), Positives = 403/669 (60%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S ++ R+TEL+K LH H + YY+ D P I D +YD+L+ EL ++E +PEL++ DS +
Sbjct: 2 SDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLR 61
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + + V H M+SLDN F D ++ F +R+T+ + ++ + E K DG+AV
Sbjct: 62 VGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLAV 121
Query: 132 NLRYEYGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L +A+TRGD PL L P LEVR EV + K F
Sbjct: 122 SLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAGF 181
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
LN G K+F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH +
Sbjct: 182 EALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHYQ 241
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
+ GL IC E +++ + ++ FY+ I +R +L YEIDGVV K++ + Q++LG
Sbjct: 242 RFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERLG 301
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 302 FVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNA 361
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI R + +GDTVV+ R+G+VIP+I S +L RP ++K P CP+C S + +E
Sbjct: 362 DEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEGE 421
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARCSG I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 422 AVARCSGGLI-CQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRAG 480
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
L L+R+ K A N++ A+ K+K TT +F+YALGIR VGE TA LA +F +LE + +
Sbjct: 481 ELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQ 540
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-LNNPNTKGNKNYLKEK 610
A+ EQ + +P +G F Q ++ +I++L + GI W + L K
Sbjct: 541 ASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGK 600
Query: 611 IFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 670
I V TGS RN+A ++ LG KV +SKNT+ + G+ G KL KA +L I++ D
Sbjct: 601 IVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFD 660
Query: 671 EKNFVKIVK 679
E+ ++ +K
Sbjct: 661 EQALIEFLK 669
>TIGR_CMR|VC_0971 [details] [associations]
symbol:VC_0971 "DNA ligase" species:686 "Vibrio cholerae O1
biovar El Tor" [GO:0003911 "DNA ligase (NAD+) activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006266 "DNA ligation" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
HAMAP:MF_01588 InterPro:IPR001679 InterPro:IPR003583
InterPro:IPR004149 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 InterPro:IPR018239 Pfam:PF01653 Pfam:PF03119
Pfam:PF03120 PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056
SMART:SM00278 SMART:SM00532 InterPro:IPR001357 Pfam:PF00533
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 KO:K01972 GO:GO:0003911 PANTHER:PTHR11107:SF5
TIGRFAMs:TIGR00575 HSSP:O87703 OMA:ENVRTIR ProtClustDB:PRK07956
PIR:F82258 RefSeq:NP_230618.1 ProteinModelPortal:Q9KTD1 SMR:Q9KTD1
GeneID:2614224 KEGG:vch:VC0971 PATRIC:20081040 Uniprot:Q9KTD1
Length = 669
Score = 1282 (456.3 bits), Expect = 1.0e-130, P = 1.0e-130
Identities = 274/669 (40%), Positives = 403/669 (60%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S ++ R+TEL+K LH H + YY+ D P I D +YD+L+ EL ++E +PEL++ DS +
Sbjct: 2 SDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLR 61
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + + V H M+SLDN F D ++ F +R+T+ + ++ + E K DG+AV
Sbjct: 62 VGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLAV 121
Query: 132 NLRYEYGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L +A+TRGD PL L P LEVR EV + K F
Sbjct: 122 SLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAGF 181
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
LN G K+F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH +
Sbjct: 182 EALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHYQ 241
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
+ GL IC E +++ + ++ FY+ I +R +L YEIDGVV K++ + Q++LG
Sbjct: 242 RFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERLG 301
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 302 FVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNA 361
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI R + +GDTVV+ R+G+VIP+I S +L RP ++K P CP+C S + +E
Sbjct: 362 DEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEGE 421
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARCSG I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 422 AVARCSGGLI-CQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRAG 480
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
L L+R+ K A N++ A+ K+K TT +F+YALGIR VGE TA LA +F +LE + +
Sbjct: 481 ELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQ 540
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-LNNPNTKGNKNYLKEK 610
A+ EQ + +P +G F Q ++ +I++L + GI W + L K
Sbjct: 541 ASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAGK 600
Query: 611 IFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 670
I V TGS RN+A ++ LG KV +SKNT+ + G+ G KL KA +L I++ D
Sbjct: 601 IVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFD 660
Query: 671 EKNFVKIVK 679
E+ ++ +K
Sbjct: 661 EQALIEFLK 669
>TIGR_CMR|SO_2896 [details] [associations]
symbol:SO_2896 "DNA ligase, NAD-dependent" species:211586
"Shewanella oneidensis MR-1" [GO:0003911 "DNA ligase (NAD+)
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR003583 InterPro:IPR004149 InterPro:IPR004150
InterPro:IPR013839 InterPro:IPR013840 InterPro:IPR018239
Pfam:PF01653 Pfam:PF03119 Pfam:PF03120 PIRSF:PIRSF001604
PROSITE:PS01055 PROSITE:PS01056 SMART:SM00278 SMART:SM00532
InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 HOGENOM:HOG000218459 KO:K01972 GO:GO:0003911
PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575 HSSP:O87703 OMA:ENVRTIR
RefSeq:NP_718468.1 ProteinModelPortal:Q8ED70 SMR:Q8ED70
GeneID:1170586 KEGG:son:SO_2896 PATRIC:23525434
ProtClustDB:CLSK906920 Uniprot:Q8ED70
Length = 689
Score = 1256 (447.2 bits), Expect = 5.9e-128, P = 5.9e-128
Identities = 261/661 (39%), Positives = 399/661 (60%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L + L+ HNI YY+ D P I+D++YD+L+ +LKK+E +YP+ + DS TQ VG +
Sbjct: 30 LSQSLNEHNIRYYVDDAPSITDSEYDRLMQQLKKLEAEYPQFVLADSPTQRVGGLALAKF 89
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ + H M+SLDN F + D F+KR+++ + + + E K DG+AV++ Y G L
Sbjct: 90 EQITHLKPMLSLDNAFDEADFTAFHKRVSDRVG---QVSFCCEPKLDGLAVSILYRNGVL 146
Query: 141 KQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
++A+TRGD PL L PEL+EVR E + K F LN+
Sbjct: 147 ERAATRGDGTVGEDITENVKTIKSIPLRLRGNNYPELVEVRGEAFMPKAAFEALNERARL 206
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPSSHSELLNWYQK 258
K+F NPRNAAAG LRQL+ KI ++ L F+A+ +G E + +H E L +
Sbjct: 207 KDDKQFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPSSHELAKTHYEQLQQLKS 266
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL + E V +N++ +YK I +R +LP+EIDGVV K+N ++ Q+ LGF +++PR
Sbjct: 267 WGLPVSSEIKVCDELNQVFAYYKDILTRRSDLPFEIDGVVMKVNDIAQQQTLGFVAKSPR 326
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E +T ++ ++ Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R
Sbjct: 327 WAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIERLG 386
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
+ +GDTV++ R+G+VIP+I + + R D++ P CP+C S + +E +ARCSG
Sbjct: 387 VMVGDTVIIRRAGDVIPQIVAIVPERRSEDAQAIVFPQHCPVCGSLVERLEGEAVARCSG 446
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
+ C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+K+ + LDR
Sbjct: 447 G-LFCEAQRKEAIKHFASRKALDIDGMGDKIVEQLIDKELVQSPADLFKLTASMMTMLDR 505
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N+ LAI+ +K TT RF+YALGIR VGE TA LA +F +L+ + AT EQL+
Sbjct: 506 MGMKSATNLALAIEAAKTTTLPRFLYALGIREVGEATAANLAAHFGSLDALRIATIEQLI 565
Query: 559 NIPKIGSTTVKAFIKFINQPLHRL-LISQLRDVGIYWLNNPNTKGNKNYLKEKIFVFTGS 617
+ IG + F QP H L +I L G+ W ++ LK + +V TG+
Sbjct: 566 EVEDIGEVVAQHVAHFFAQP-HNLEVIDALIAAGVNWPAIEAPSADEQPLKGQTWVLTGT 624
Query: 618 LYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 677
L RN+A ++ LG KV +SKNT+ LV G+ G KL KA +L +K++ E + +
Sbjct: 625 LNQLNRNDAKAQLQVLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLAL 684
Query: 678 V 678
+
Sbjct: 685 L 685
>TIGR_CMR|CHY_1100 [details] [associations]
symbol:CHY_1100 "DNA ligase, NAD-dependent" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003911 "DNA ligase
(NAD+) activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR003583 InterPro:IPR004149 InterPro:IPR004150
InterPro:IPR013839 InterPro:IPR013840 InterPro:IPR018239
Pfam:PF01653 Pfam:PF03119 Pfam:PF03120 PIRSF:PIRSF001604
PROSITE:PS01055 PROSITE:PS01056 SMART:SM00278 SMART:SM00532
InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006260 GO:GO:0006281
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 KO:K01972 GO:GO:0003911 PANTHER:PTHR11107:SF5
TIGRFAMs:TIGR00575 HOGENOM:HOG000218458 OMA:ENVRTIR
RefSeq:YP_359946.1 ProteinModelPortal:Q3AD38 SMR:Q3AD38
STRING:Q3AD38 GeneID:3728712 KEGG:chy:CHY_1100 PATRIC:21275338
BioCyc:CHYD246194:GJCN-1099-MONOMER Uniprot:Q3AD38
Length = 664
Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
Identities = 266/662 (40%), Positives = 401/662 (60%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL+ LH HN YY+ D P ISD +YD++L EL +E++YPE +T DS +Q VG
Sbjct: 9 RIEELRALLHYHNYRYYVLDQPEISDAEYDRMLRELISLEQQYPEFITPDSPSQRVGGEV 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M SLDN F ED+ F++R+ + L + +EY ELK DG+A++L YE
Sbjct: 69 AKEFREVAHLKPMYSLDNAFGPEDLKEFDRRVRSLLP-GQEVEYEVELKIDGLAISLVYE 127
Query: 137 YGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L + +TRG+ PL L + P LLEVR E + K+ F +LN+
Sbjct: 128 NGVLVRGATRGNGTTGEDITANVKTIKAIPLKL--RNPIPLLEVRGEAYMPKESFARLNE 185
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G F NPRNAAAG LRQL+PK+ + L F + +GE++G P + +EL+ W
Sbjct: 186 QREERGEPLFANPRNAAAGSLRQLDPKVTAERDLSAFMYAIGEVQGYE-PKTQAELMEWL 244
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++G + V + ++ +I + + + KRF+LPY IDG+V K+N L+ Q+ LGFT+++
Sbjct: 245 SELGFKVNPYREVFNNIDDVINYCQSWHEKRFSLPYVIDGLVIKVNSLAQQEALGFTAKS 304
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++ A T++K I +++GRTG++TP A+ +PV + G T+TRA+LHNE I
Sbjct: 305 PRWAIAYKFPAEIAETRLKDIIVRVGRTGVLTPTAIFEPVSLAGTTVTRASLHNEDYIRE 364
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD + V ++G +IP++ + R K F +P+ CP+C K + + RC
Sbjct: 365 KDIRIGDIIRVQKAGEIIPEVVEVVKEKRTGAEKEFVMPDTCPVCQGKAVRLPGEAAWRC 424
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+ + C AQ K G+ HF+SR AMNI GLG + E L+ A ++ DLY ++ + + RL
Sbjct: 425 TNA--SCPAQLKEGIVHFASRGAMNIEGLGPAVAELLLEAGLIHNYADLYYLSAEEVARL 482
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
R+ K A N++ AI+KSK + R IY LGIR VGE A++LA +FK L+ + A EE+
Sbjct: 483 PRMGKKSAENLINAIEKSKQNSLERLIYGLGIRLVGEKAARDLAVHFKELDKLIAAGEEE 542
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGNKNYLKEKIFVFTG 616
++ IP +G + F Q + LI +L+ G+ + N+ L+ FV TG
Sbjct: 543 IMAIPSVGPKMAASIKAFFAQKENLELIEKLKAAGVNTKYLAEVRDNR--LEGLTFVLTG 600
Query: 617 SLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 676
+L +F R EA LI +LGGKV + +SK T+Y+V G+ PG KL KA +L I IL E+ F +
Sbjct: 601 TLSSFTRKEAEQLILSLGGKVSSSVSKKTSYVVVGEDPGSKLTKAKELGIPILTEEEFRQ 660
Query: 677 IV 678
+V
Sbjct: 661 MV 662
>TIGR_CMR|GSU_0890 [details] [associations]
symbol:GSU_0890 "DNA ligase, NAD-dependent" species:243231
"Geobacter sulfurreducens PCA" [GO:0003911 "DNA ligase (NAD+)
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR003583 InterPro:IPR004149 InterPro:IPR004150
InterPro:IPR013839 InterPro:IPR013840 InterPro:IPR018239
Pfam:PF01653 Pfam:PF03119 Pfam:PF03120 PIRSF:PIRSF001604
PROSITE:PS01055 PROSITE:PS01056 SMART:SM00278 SMART:SM00532
InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 HOGENOM:HOG000218459 KO:K01972 GO:GO:0003911
PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575 HSSP:O87703 OMA:ENVRTIR
RefSeq:NP_951947.1 ProteinModelPortal:Q74ER9 GeneID:2687161
KEGG:gsu:GSU0890 PATRIC:22024545 ProtClustDB:CLSK828084
BioCyc:GSUL243231:GH27-877-MONOMER Uniprot:Q74ER9
Length = 670
Score = 1225 (436.3 bits), Expect = 1.1e-124, P = 1.1e-124
Identities = 266/665 (40%), Positives = 395/665 (59%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV L+ EL RHN YY D P I+D +YD L EL +E ++P+L DS TQ VG
Sbjct: 9 RVAALRTELERHNRLYYAEDRPEITDAEYDLLFRELVDLETRFPDLAAPDSPTQRVGGAP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIE--YIAELKFDGIAVNLR 134
+ + V H M+SL+N F+D ++ F+ R+ L L ++E Y+ E K DG+AV L
Sbjct: 69 LDKFEQVTHRIPMLSLENAFTDVEIADFDDRVKRFLGLHGDVEIDYVCEPKMDGLAVELV 128
Query: 135 YEYGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194
YE G L STRGD PL L + PPELLEVR EV + F +L
Sbjct: 129 YERGILTVGSTRGDGVVGENVTHNLKTVRGIPLRLRCEQPPELLEVRGEVYLPLAAFQRL 188
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N R G F NPRNAAAG +RQL+ +I + L F + GE+RG + ++ +E L+
Sbjct: 189 NAQREEEGEPPFANPRNAAAGSIRQLDSRITARRPLAIFCYAPGEVRGASF-AAQTEFLD 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
+ GL + + GV +++ +Y+++ +R +LPYEIDGVV K++ + Q++LG S
Sbjct: 248 RIGEWGLPVNPLIRPVKGVAEILAYYREMTERRDSLPYEIDGVVVKVDSFALQRELGEKS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R+PR+A+A KF ++A+T ++ I +GRTG+ITP A L+PV + G+T++RATLHN E+
Sbjct: 308 RSPRWAVAVKFPPRQAVTVVEDIVPSVGRTGVITPTANLRPVEVSGVTVSRATLHNWEEM 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
RK+I+IGDTVV+ R+G+VIP + + R + IP +CP C S+++ I +
Sbjct: 368 ERKDIRIGDTVVIERAGDVIPAVVKVLTEKRSGSERPLPIPAVCPECGSEVVKIPDEVAV 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC G + C AQ + + HF+SR AM++ GLG+K IE+L+ +V DLY + +
Sbjct: 428 RCMG--LSCPAQIRESIIHFASRDAMDMEGLGEKYIEQLLRLGLVKNVADLYTLTKDQFM 485
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
+ DR+ +KLA N+L AI+ SK SRFI+ALGIRHVGE TAK LA F ++E + +ATE
Sbjct: 486 QFDRMGDKLAENLLNAIEASKQRELSRFIFALGIRHVGEHTAKLLAGAFGSIENLERATE 545
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGNKNYLKEKIFVF 614
E+LL+I ++G ++ I F +R I ++ G+ G + K FVF
Sbjct: 546 EELLSIREVGPQVARSIITFFRNEGNRETIRRMFKAGVRPTAEEKKVGGR--FTGKTFVF 603
Query: 615 TGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 674
TG+L F R EA ++E GG +SK T+Y+V G + G KL+KA +L +++L E F
Sbjct: 604 TGALTRFSRPEAQKMVEKEGGHAAGSVSKKTDYVVAGAEAGSKLDKARQLGVRVLTEDEF 663
Query: 675 VKIVK 679
+ +++
Sbjct: 664 LAMLE 668
>TIGR_CMR|BA_0306 [details] [associations]
symbol:BA_0306 "DNA ligase, NAD-dependent" species:198094
"Bacillus anthracis str. Ames" [GO:0003911 "DNA ligase (NAD+)
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR003583 InterPro:IPR004149 InterPro:IPR004150
InterPro:IPR013839 InterPro:IPR013840 InterPro:IPR018239
Pfam:PF01653 Pfam:PF03119 Pfam:PF03120 PIRSF:PIRSF001604
PROSITE:PS01055 PROSITE:PS01056 SMART:SM00278 SMART:SM00532
InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
InterPro:IPR010994 SUPFAM:SSF47781 eggNOG:COG0272 KO:K01972
GO:GO:0003911 PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575
RefSeq:NP_842855.1 RefSeq:YP_026572.1 RefSeq:YP_052606.1
HSSP:O87703 ProteinModelPortal:Q81ZG1 SMR:Q81ZG1 IntAct:Q81ZG1
DNASU:1084819 EnsemblBacteria:EBBACT00000012592
EnsemblBacteria:EBBACT00000018293 EnsemblBacteria:EBBACT00000020619
GeneID:1084819 GeneID:2821092 GeneID:2850693 KEGG:ban:BA_0306
KEGG:bar:GBAA_0306 KEGG:bat:BAS0292 HOGENOM:HOG000218458
OMA:ENVRTIR ProtClustDB:PRK07956 BioCyc:BANT260799:GJAJ-334-MONOMER
BioCyc:BANT261594:GJ7F-343-MONOMER Uniprot:Q81ZG1
Length = 669
Score = 1118 (398.6 bits), Expect = 2.5e-113, P = 2.5e-113
Identities = 244/665 (36%), Positives = 392/665 (58%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL+ L+ N Y++ DNP +SD +YD+ + EL K+E + PE +++DS + VG
Sbjct: 9 RIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSIRVGGTV 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SL N F++ D+ F++R+ + N+ YI ELK DG+AV+L YE
Sbjct: 69 LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVRQGID-DANVRYICELKIDGLAVSLHYE 127
Query: 137 YGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G Q +TRGD PL LN + LE R E + K+ F+KLN+
Sbjct: 128 KGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEVT---LEARGEAYMPKRSFVKLNE 184
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ G F NPRNAAAG +RQL+PKI + L F +G+ + +PS HSE L++
Sbjct: 185 EKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKTIPS-HSESLDYL 243
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++G + ++I + ++ KR +L YEIDG+V K++ ++ Q+ LG T+++
Sbjct: 244 GELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVALQESLGTTAKS 303
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T++ I + +GRTG++TP A L+PV + G + RA+LHNE I
Sbjct: 304 PRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRRASLHNEDLIRE 363
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD VVV ++G++IP++ + I R + + +P CP C S+++ +E + RC
Sbjct: 364 KDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGGEEEYHMPTHCPACESELVRLEEEVALRC 423
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
C AQ + GL HF SR AMNI GLG+++I +L +A+ + T DLY + + LL+L
Sbjct: 424 INP--TCPAQIREGLIHFVSRNAMNIDGLGERVITQLFDADYIRTFADLYSLTKEQLLQL 481
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R K A N++ AI+ SK + R ++ LGIRHVG A+ A +F+ ++ + KATEE+
Sbjct: 482 ERFGEKSATNLVQAIENSKENSLERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEE 541
Query: 557 LLNIPKIGSTTVKAFIKFI-NQPLHRLLISQLRDVGI---Y-WLNNPNTKGNKNYLKEKI 611
L I +IG ++ + + N+ + LL Q ++ G+ Y + + + ++Y K
Sbjct: 542 LKAINEIGEKMAQSVVAYFDNEDVLELL-QQFKEYGVNMTYKGIKIADLQNVESYFAGKT 600
Query: 612 FVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 671
V TG L R+EA IE LGGKV +SK+T+ +V G+ G KL +A K N+++ +E
Sbjct: 601 VVLTGKLEVMGRSEAKKKIEALGGKVTGSVSKSTDLVVAGEAAGSKLAQAEKHNVEVWNE 660
Query: 672 KNFVK 676
+ F++
Sbjct: 661 ERFLQ 665
>TIGR_CMR|DET_0596 [details] [associations]
symbol:DET_0596 "DNA ligase, NAD-dependent" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003911 "DNA ligase (NAD+)
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR003583 InterPro:IPR004149 InterPro:IPR004150
InterPro:IPR013839 InterPro:IPR013840 InterPro:IPR018239
Pfam:PF01653 Pfam:PF03119 Pfam:PF03120 PIRSF:PIRSF001604
PROSITE:PS01055 PROSITE:PS01056 SMART:SM00278 SMART:SM00532
InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 EMBL:CP000027 GenomeReviews:CP000027_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 HOGENOM:HOG000218459 KO:K01972 GO:GO:0003911
PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575 OMA:ENVRTIR
RefSeq:YP_181338.1 ProteinModelPortal:Q3Z8W1 STRING:Q3Z8W1
GeneID:3230074 KEGG:det:DET0596 PATRIC:21608263
ProtClustDB:CLSK2516600 BioCyc:DETH243164:GJNF-597-MONOMER
Uniprot:Q3Z8W1
Length = 677
Score = 1066 (380.3 bits), Expect = 8.1e-108, P = 8.1e-108
Identities = 241/674 (35%), Positives = 376/674 (55%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ L++E++RHN YY+ DNP ISD++YD LL LK++EE +PEL+T DS TQ VG
Sbjct: 8 IENLRREINRHNQLYYVQDNPEISDSEYDALLRRLKELEEAHPELVTADSPTQRVGAEPL 67
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYI--AELKFDGIAVNLRY 135
+ V+H + ++SL N FSD ++ + R+ KL N + E K DG+AV L Y
Sbjct: 68 KAFGIVNHPYPLLSLANAFSDTELEAWYLRVK---KLLGNAAFQIDCEPKMDGLAVALTY 124
Query: 136 EYGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
G +TRGD PL PP + E+R EV + K+ F KLN
Sbjct: 125 RNGKFTTGATRGDGFQGENITRNLRTIHSIPLNTEEDAPP-VFEIRGEVYLPKEGFAKLN 183
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
+ R GL F NPRNAAAG LRQL+P + + L F + +G +P SH ++L +
Sbjct: 184 RERADKGLSLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYAEDSLLPDSHWQILEY 243
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ ++G I +++ + + E+Y+++ R +LPYE DGVV+K++ +S Q+KLG R
Sbjct: 244 FSRLGFKINPRNRLVNTLEEAKEYYREMAENRDSLPYEADGVVFKVDSVSLQQKLGDAGR 303
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
PR+A+AYKF +++ T ++ I I +GRTG + P A+L+PV + G+ + +A+LHNE +I
Sbjct: 304 EPRWAIAYKFPAEQVTTLLRKIGISVGRTGTLNPYAILEPVNVGGVVVKQASLHNEDDIL 363
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKI------PNI----CPICNSKI 425
RK+I+ GDTVV+ R+G VIP++ + +L+ R +SK F + P + CP+C +I
Sbjct: 364 RKDIREGDTVVIQRAGEVIPEVVAPVLAKRSPESKPFSMEETLFNPKLSRPACPVCGGEI 423
Query: 426 IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDL 485
+ C+ + C AQ + L+HF SR M+I G+G+ + L +V DL
Sbjct: 424 YRPAGEAMHYCAN--VSCPAQFERQLEHFVSRGTMDIRGIGESLSVILAQEGLVKNVSDL 481
Query: 486 YKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN 545
Y + +LL+L R+ K A+NI+ AI SK R I+ LGIRHVG TA L++ + +
Sbjct: 482 YYLTAADLLKLPRMGEKSADNIIKAIADSKSRPLDRVIFGLGIRHVGNETAALLSSRYGD 541
Query: 546 LECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGNKN 605
+ + A ++L IP IG+ + + ++ + +I +L G+ ++
Sbjct: 542 IWALAGAGLDELQTIPDIGAKIASSIKAYFSEEKNIAVIRRLETAGVKLASDQKPSYKPL 601
Query: 606 YLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLN 665
L FV TG L + R EA I +LGG + ++K T YLV G G KL KA +
Sbjct: 602 PLSGVEFVVTGKLDSLSREEAQQKIRSLGGTAKDNVTKATRYLVVGADAGSKLAKARSMG 661
Query: 666 IKILDEKNFVKIVK 679
+K L E+ F+ +++
Sbjct: 662 VKELSEQEFINMLE 675
>UNIPROTKB|P63973 [details] [associations]
symbol:ligA "DNA ligase" species:1773 "Mycobacterium
tuberculosis" [GO:0000287 "magnesium ion binding" evidence=IDA]
[GO:0003911 "DNA ligase (NAD+) activity" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0006266 "DNA
ligation" evidence=IDA;IMP] [GO:0040007 "growth" evidence=IMP]
HAMAP:MF_01588 InterPro:IPR001679 InterPro:IPR003583
InterPro:IPR004149 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 InterPro:IPR018239 Pfam:PF01653 Pfam:PF03119
Pfam:PF03120 PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056
SMART:SM00278 SMART:SM00532 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005829 GO:GO:0005886 GO:GO:0040007 GO:GO:0005618
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0000287 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
EMBL:BX842581 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994
SUPFAM:SSF47781 eggNOG:COG0272 HOGENOM:HOG000218459 KO:K01972
GO:GO:0003911 TIGRFAMs:TIGR00575 OMA:ENVRTIR ProtClustDB:PRK07956
PIR:A70857 RefSeq:NP_217530.1 RefSeq:NP_337609.2
RefSeq:YP_006516472.1 PDB:1ZAU PDB:3SGI PDBsum:1ZAU PDBsum:3SGI
ProteinModelPortal:P63973 SMR:P63973 PRIDE:P63973
EnsemblBacteria:EBMYCT00000001007 EnsemblBacteria:EBMYCT00000069264
GeneID:13317815 GeneID:887354 GeneID:923055 KEGG:mtc:MT3094
KEGG:mtu:Rv3014c KEGG:mtv:RVBD_3014c PATRIC:18128568
TubercuList:Rv3014c BindingDB:P63973 EvolutionaryTrace:P63973
PANTHER:PTHR11107:SF8 Uniprot:P63973
Length = 691
Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
Identities = 243/672 (36%), Positives = 368/672 (54%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG-GEN 79
L +E+ H YY+ D PIISD ++D+LL L+ +EE++PEL T DS TQ VG G +
Sbjct: 20 LAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPELRTPDSPTQLVGGAGFATD 79
Query: 80 SKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGY 139
+ V H +M+SLDN F+ +++ + RI E+ + Y+ ELK DG+A++L Y G
Sbjct: 80 FEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH--YLCELKIDGVALSLVYREGR 137
Query: 140 LKQASTRGDXXXXXXXXXXXXXXXXXP--LVLNIKYP-PELLEVRCEVLIYKKDFIKLNK 196
L +ASTRGD P L YP PE+LEVR EV DF LN
Sbjct: 138 LTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFFRLDDFQALNA 197
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G F NPRN+AAG LRQ +P + + L HG+G + G + H L
Sbjct: 198 SLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPATLHQAYLA-L 256
Query: 257 QKIGLSICGEYSV---LSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
+ GL + ++ L+GV + I+++ + R + +EIDGVV K++ ++ Q++LG T
Sbjct: 257 RAWGLPVSEHTTLATDLAGVRERIDYWGE---HRHEVDHEIDGVVVKVDEVALQRRLGST 313
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
SRAPR+A+AYK+ +EA TK+ I + +GRTG ITP A + PV + G T+ +ATLHN SE
Sbjct: 314 SRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNASE 373
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKII-YIESNL 432
I RK + IGDTVV+ ++G+VIP++ ++ LR + F +P CP C S + E +
Sbjct: 374 IKRKGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPECGSPLAPEKEGDA 433
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
RC + C Q + + H +SR ++I LG + L+ A ++ +L+ + ++
Sbjct: 434 DIRCPNAR-GCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAKVIADEGELFALTERD 492
Query: 493 LLRLDRVSNKL----ANN--ILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546
LLR D K AN +L+ + K+K R + AL IRHVG T A+ LA F +L
Sbjct: 493 LLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSL 552
Query: 547 ECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGNKNY 606
+ + A+ +QL + +G T A ++ HR ++ + R G+ ++ + +
Sbjct: 553 DAIAAASTDQLAAVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDERDESVPRT- 611
Query: 607 LKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNI 666
L V TGSL F R++A I GGK +SK TNY+V G PG K +KA++L +
Sbjct: 612 LAGLTIVVTGSLTGFSRDDAKEAIVARGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGV 671
Query: 667 KILDEKNFVKIV 678
ILDE F +++
Sbjct: 672 PILDEDGFRRLL 683
>TIGR_CMR|ECH_0301 [details] [associations]
symbol:ECH_0301 "DNA ligase, NAD-dependent" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003911 "DNA ligase
(NAD+) activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR004149 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 Pfam:PF01653 Pfam:PF03119 Pfam:PF03120
PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056 SMART:SM00532
InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006260 GO:GO:0006281
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 KO:K01972 OMA:NPKNSDM GO:GO:0003911
PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575 HOGENOM:HOG000218458
RefSeq:YP_507122.1 ProteinModelPortal:Q2GHG1 STRING:Q2GHG1
GeneID:3927385 KEGG:ech:ECH_0301 PATRIC:20576107
ProtClustDB:CLSK2558359 BioCyc:ECHA205920:GJNR-301-MONOMER
Uniprot:Q2GHG1
Length = 676
Score = 1004 (358.5 bits), Expect = 3.0e-101, P = 3.0e-101
Identities = 245/681 (35%), Positives = 377/681 (55%)
Query: 9 INFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSL 68
++ K + +L K++ H++ YY+ DNP ISD +YD+L + I +P+L +
Sbjct: 2 VDQEKAKLELDKLNKQIQHHDVLYYVQDNPEISDAEYDELCRKRNLILNAFPKLTQSNDY 61
Query: 69 TQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN--IEYIAELKF 126
++G V H KM SLDN F+ +DV F R L + N I ELK
Sbjct: 62 QNNIGSSPDTKFAKVKHEEKMFSLDNAFNQQDVEKFITRTKKFLNINDNQSIPLSCELKI 121
Query: 127 DGIAVNLRYEYGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLI 186
DG++ ++ Y+ G + QASTRG+ P +++ P+LLEVR E+ I
Sbjct: 122 DGLSFSVIYKKGEIYQASTRGNGYFGENITTNVKTIKNLPHIIH--NAPDLLEVRGEIYI 179
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
+ DFI+LN G F NPRNAAAG +RQL+ I + L +F + + +
Sbjct: 180 DRCDFIQLNND----G-NNFANPRNAAAGSVRQLDHNITAQRKLKYFMYTIVNTACL--- 231
Query: 247 SSHSELLNWYQ-KIGLSICGEYSVLS-GVNKLIEFYKKINIKRFNLPYEIDGVVYKINCL 304
+ ELL YQ KI E+++ + + + FY ++ R N+ Y+IDG++YK+N +
Sbjct: 232 -TQEELL--YQLKIWGFCVNEHTITTDNIEEAFNFYNQVYNNRSNINYDIDGIIYKVNDI 288
Query: 305 STQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITIT 364
+Q LG TS++PR+A+AYKF + EA T++ I+IQIGRTG++TP+A L P+ I G+ +T
Sbjct: 289 KSQHILGTTSKSPRWAIAYKFPAAEAKTQLNKISIQIGRTGVLTPIAELSPINIGGVIVT 348
Query: 365 RATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSK 424
RA+LHN++EI RK+I+ GD V+V R+G+VIP+I +LR + F P CP C S
Sbjct: 349 RASLHNKNEIERKDIREGDYVIVKRAGDVIPQIVDVDKNLRTQELTKFVFPTTCPSCGSS 408
Query: 425 IIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVD 484
+ + C+G + C Q ++HF S+ A NIIG GKK + ++ D
Sbjct: 409 VYQAKQEASIYCTGE-LFCKDQILEKIKHFVSKDAFNIIGFGKKQLLFFYEQRLITNITD 467
Query: 485 LYKINFK--NL-LRLDRV---SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKE 538
++ + K N ++L+ + K +N+ AI SK+ + FI+ALGIR +G+ AK
Sbjct: 468 IFTLEEKISNSDVKLESLHGWGEKSMSNLFSAINNSKVISLENFIFALGIRFIGKYIAKI 527
Query: 539 LANYFKNLEC----MFKAT--EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI 592
LAN+F + E M K E+ LNI +IGS T+ + F +QP H L + + D+ +
Sbjct: 528 LANHFSSYETWYNEMLKLAQNEDYSLNIQQIGSKTIGSLKMFFSQP-HNL--NMINDL-V 583
Query: 593 YWLNNPNTKGNK--NYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVK 650
L +T+ + + + KI VFTG L + R+EA I E G KV + +SKNT++L+
Sbjct: 584 KHLTITDTQSSSYLSLIHGKIIVFTGELSSMSRSEAKIRSETAGAKVSSSLSKNTDFLIA 643
Query: 651 GQKPGKKLEKAIKLNIKILDE 671
G PG K +KA LN++IL E
Sbjct: 644 GNNPGSKYKKAQSLNVQILTE 664
>TIGR_CMR|SPO_1680 [details] [associations]
symbol:SPO_1680 "DNA ligase, NAD-dependent" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003911 "DNA ligase (NAD+) activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR004149 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 InterPro:IPR018239 Pfam:PF01653 Pfam:PF03119
Pfam:PF03120 PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056
SMART:SM00532 InterPro:IPR001357 Pfam:PF00533 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0006260 GO:GO:0006281
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 HOGENOM:HOG000218459 KO:K01972 GO:GO:0003911
PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575 HSSP:O87703 OMA:ENVRTIR
RefSeq:YP_166919.1 ProteinModelPortal:Q5LST6 PRIDE:Q5LST6
GeneID:3192682 KEGG:sil:SPO1680 PATRIC:23376685
ProtClustDB:CLSK933607 Uniprot:Q5LST6
Length = 739
Score = 856 (306.4 bits), Expect = 4.2e-98, Sum P(2) = 4.2e-98
Identities = 210/549 (38%), Positives = 302/549 (55%)
Query: 25 LHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVH 84
L + N+AY+ D P ISD YD L +IE ++P L DS ++ VG GE V
Sbjct: 17 LAQANLAYHTLDAPEISDADYDALKQRNAEIEARFPHLKRPDSPSEQVGARPGEGFSKVS 76
Query: 85 HTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN--IEYIAELKFDGIAVNLRYEYGYLKQ 142
H +MMSL N F D DV F++ I L L + Y AE K DG++++LRYE G L Q
Sbjct: 77 HAVRMMSLGNAFDDADVADFDRSIRKYLGLDVETALAYTAEPKIDGLSLSLRYEQGVLVQ 136
Query: 143 ASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLG 202
A+TRGD P I+ PE+LEVR EV + DF LN + G
Sbjct: 137 AATRGDGEVGENVTANARTIADIPA--RIEGAPEVLEVRGEVYMSHADFAALNTRQEAEG 194
Query: 203 LKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLS 262
K F NPRNAAAG LRQL+ I + + L FFA+ GEL + + + + +G
Sbjct: 195 GKLFANPRNAAAGSLRQLDAAITRARPLRFFAYSWGEL-SEPLAETQMQAIERLAGLGFQ 253
Query: 263 ICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALA 322
+ ++ +I Y+ I +R L Y+IDGVVYK++ L Q +LGF S PR+A+A
Sbjct: 254 TNPLTRRCADLDAMIAHYRDIEAQRATLGYDIDGVVYKLDDLGLQARLGFRSTTPRWAIA 313
Query: 323 YKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI-------- 374
+KF ++ A T+++AI+IQ+GRTG ++PVA L PV + G+ ++ ATLHNE I
Sbjct: 314 HKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGVVVSNATLHNEDYIAGRDSRGQ 373
Query: 375 -YR--KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
R K+I++GD V V+R+G+VIPKI L+ RP + F+ P CP C S I E +
Sbjct: 374 EIRDGKDIRVGDWVQVYRAGDVIPKIADVDLNKRPEGANPFEFPEQCPECGSPAIREEGD 433
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ RC+G I C AQ L+HF SR A +I GLG K +E+ + D++++ +
Sbjct: 434 AVRRCTGGVI-CPAQAVEKLKHFVSRAAFDIEGLGAKQVEQFHADGWIREPADIFELRSR 492
Query: 492 NLLRLDRVSN------KLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN 545
L ++ N K A N+ AI + +R I+ALGIRHVGE AK+L+ ++++
Sbjct: 493 YGEGLQQLKNREGWGEKSATNLFQAIDDKRRIPLARLIFALGIRHVGEVGAKDLSLHYRD 552
Query: 546 LECMFKATE 554
+ M A +
Sbjct: 553 WDAMAAALD 561
Score = 138 (53.6 bits), Expect = 4.2e-98, Sum P(2) = 4.2e-98
Identities = 33/83 (39%), Positives = 45/83 (54%)
Query: 598 PNTKGNKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKK 657
P+ + + K VFTGSL R EA E LG KV +SK T+ LV G G K
Sbjct: 656 PDAPARDSPVAGKTVVFTGSLEKMTRAEAKARAEALGAKVAGSVSKKTDLLVAGPGAGSK 715
Query: 658 LEKAIKLNIKILDEKNFVKIVKG 680
L+ A L I+ LDE ++K+++G
Sbjct: 716 LKTAESLGIETLDEDGWLKLIEG 738
>TIGR_CMR|CJE_0689 [details] [associations]
symbol:CJE_0689 "DNA ligase, NAD-dependent" species:195099
"Campylobacter jejuni RM1221" [GO:0003911 "DNA ligase (NAD+)
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR003583 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 InterPro:IPR018239 Pfam:PF01653 Pfam:PF03120
PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056 SMART:SM00278
SMART:SM00532 InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 EMBL:CP000025
GenomeReviews:CP000025_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
InterPro:IPR010994 SUPFAM:SSF47781 eggNOG:COG0272 KO:K01972
GO:GO:0003911 PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575
HOGENOM:HOG000218458 OMA:ENVRTIR ProtClustDB:PRK07956
RefSeq:YP_178701.1 HSSP:P26996 ProteinModelPortal:Q5HVI4
STRING:Q5HVI4 GeneID:3231989 KEGG:cjr:CJE0689 PATRIC:20043106
BioCyc:CJEJ195099:GJC0-706-MONOMER Uniprot:Q5HVI4
Length = 647
Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
Identities = 226/649 (34%), Positives = 357/649 (55%)
Query: 31 AYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMM 90
AYY D P+ SD +YD L+ EL+ EE+ + ++KDS TQ + K + H +M
Sbjct: 19 AYYEKDEPLASDEEYDALIRELRVFEEQNKDEISKDSPTQKIAPTIQSEFKKIAHLKRMW 78
Query: 91 SLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDXX 150
S+++ F + ++ + KR K KN + E KFDG ++NL YE G L +TRGD
Sbjct: 79 SMEDVFDESELRAWAKRA----KCEKN--FFIEPKFDGASLNLLYENGKLVSGATRGDGE 132
Query: 151 XXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPR 210
P NI Y E +E+R EV+I K DF K+N+ R L F NPR
Sbjct: 133 VGEDITLNVFEIENIPK--NIAYK-ERIEIRGEVVILKDDFEKINEKRALLNQSLFANPR 189
Query: 211 NAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVL 270
NAA+G LRQL+ I K + L F+ GVGE +N + HSE++ + +++G +
Sbjct: 190 NAASGSLRQLDTSITKERNLKFYPWGVGE-NTLNF-TKHSEVMQFIRELGFLKDDFVRLC 247
Query: 271 SGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEA 330
+ ++++++ Y ++ + R P +DG+V +++ L+ ++LG+T + P+F A+KF + E
Sbjct: 248 ANLDEVLKAYDELLVLREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAFKFPALEK 307
Query: 331 LTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRS 390
T++ +N+Q+GR+G ITPVA+L+PV +DG+ + ATLHN EI R +++I D V V RS
Sbjct: 308 TTRLIGVNLQVGRSGAITPVAVLEPVNLDGVVVKSATLHNFDEIARLDVKINDFVSVIRS 367
Query: 391 GNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAG 450
G+VIPKIT R P +CP C S+++ E LI +C I+C +
Sbjct: 368 GDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLD-EGTLI-KCQN--IDCEDRLVNS 423
Query: 451 LQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLA 510
+ HF S+K +NI GLG+ ++E L + T ++ + F + L+ K NN+L A
Sbjct: 424 IIHFVSKKCLNIDGLGENIVELLYKHKKITTLESIFHLKFNDFEGLEGFKEKKINNLLNA 483
Query: 511 IQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKA 570
I++++ RFI ALGI H+GE AK+L+ F E +K + E N+ G +
Sbjct: 484 IEQARECELFRFITALGIEHIGEVAAKKLSLSFGK-E-WYKQSFEAYANLEGFGEQMALS 541
Query: 571 FIKFINQPLHRLLISQLRDVGIYWLNNPNTKGNKNYLKEKIFVFTGSLYAFKRNEAIILI 630
+F ++ I + + + K + + K FV TG+L + R+E LI
Sbjct: 542 LCEFTR--VNHTRIDEFYKLLNLKIEKLEIKSD-GVIFGKTFVITGTL-SRPRDEFKALI 597
Query: 631 ENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 679
E LGGKV +SK T+Y++ G++ G KL KA +L +K +DE F ++VK
Sbjct: 598 EKLGGKVSGSVSKKTDYVLFGEEAGSKLSKAKELEVKCIDESAFNELVK 646
>TIGR_CMR|APH_0138 [details] [associations]
symbol:APH_0138 "DNA ligase, NAD-dependent" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003911 "DNA ligase (NAD+)
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR004149 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 InterPro:IPR018239 Pfam:PF01653 Pfam:PF03119
Pfam:PF03120 PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056
SMART:SM00532 InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872
GO:GO:0006260 GO:GO:0006281 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
RefSeq:YP_504763.1 ProteinModelPortal:Q2GLI8 STRING:Q2GLI8
GeneID:3929997 KEGG:aph:APH_0138 PATRIC:20948848 eggNOG:COG0272
HOGENOM:HOG000218459 KO:K01972 OMA:NPKNSDM ProtClustDB:CLSK747278
BioCyc:APHA212042:GHPM-173-MONOMER GO:GO:0003911
PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575 Uniprot:Q2GLI8
Length = 677
Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
Identities = 232/681 (34%), Positives = 359/681 (52%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG-LV 75
R+ +L +L H++ Y+ +D P ISD +YD L+ E +++ EK+PEL + +G L
Sbjct: 9 RLADLNAQLKLHDVLYHEHDAPEISDAQYDALVQEKRELLEKFPELSAYNDYEGVIGALT 68
Query: 76 GGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEY-IA-ELKFDGIAVNL 133
+ H M+SL+N F+ +DV F R+ L + + IA E K DG++
Sbjct: 69 VDARLPKIAHREPMLSLENSFTIQDVEKFISRVKRSLNMDPEVSITIACEPKIDGLSFAA 128
Query: 134 RYEYGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDFIK 193
YE G L + +TRG+ P I PE+LEVR E+ ++ DF K
Sbjct: 129 LYEKGSLIRVATRGNGHLGEDITNTAKVIRKLPH--KIANAPEVLEVRGEIYMHHSDFEK 186
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253
L + F NPRNAAAG +RQLNPKI + + L + A+ + + + +L
Sbjct: 187 LKD------VCNFANPRNAAAGSIRQLNPKIAEERNLRYVAYCIVNSALASQEAILKQLA 240
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
W G E ++ + F+ ++ R L Y+IDG+VYK+N QK LG T
Sbjct: 241 EW----GFCTHTEVLFADNMDDALSFHTRMYNTRSTLGYDIDGIVYKVNDTHLQKLLGST 296
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
S+ PR+A A+KF S EA+TK++ I++Q+GRTG+ITP+A L+P+ I G ++RA+LHN +E
Sbjct: 297 SKYPRWATAHKFPSTEAITKLRDISVQVGRTGVITPIAELEPINIGGTLVSRASLHNLNE 356
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDS--KIFKIPNICPICNSKIIYIESN 431
I RK+I+IGD+V+V R+G VIP++ + R N + + + P+ CP C S +
Sbjct: 357 IARKDIRIGDSVIVKRAGEVIPQVVGVDHTARCNSAVPEEYVFPSHCPSCGSTLSRAPGE 416
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY----K 487
+ RC+ + C AQ ++HF SR +NI+GLG+K IE NA+ + D++ K
Sbjct: 417 VAMRCTAE-LSCQAQVLERVKHFVSRDGLNIVGLGEKQIEFFCNASYISNVADIFSLREK 475
Query: 488 INFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLE 547
I+ NL K ++ AI S S FI+ALGIR +G+ AK +A ++++
Sbjct: 476 ISHMNLSAEHGWGEKSIALLINAINASTTVKLSNFIFALGIRFIGKGAAKLIAEHYRSYS 535
Query: 548 CMFKATE-----EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNN-PNTK 601
+A E NI IG ++++ F + L + Q + + LN NT+
Sbjct: 536 AWVRAMTSLANGEDPDNIHGIGLKSIESLRAFFSSE-DNLRVLQTLEEKLNILNEIANTE 594
Query: 602 GNKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKA 661
+ + K VFTG L RNEA E LG KV N ++ T+ LV G G KL+ A
Sbjct: 595 -TASPISGKTIVFTGVLEDMSRNEAAKYAETLGAKVGNTVTTKTDILVAGSNSGSKLDTA 653
Query: 662 IKLNIKILDEKNFVKIVKGFS 682
KL I++++E + ++K S
Sbjct: 654 RKLGIQVMNESEWKDLLKTVS 674
>TIGR_CMR|NSE_0500 [details] [associations]
symbol:NSE_0500 "DNA ligase, NAD-dependent" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003911 "DNA ligase
(NAD+) activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR004149 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 InterPro:IPR018239 Pfam:PF01653 Pfam:PF03119
Pfam:PF03120 PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056
SMART:SM00532 InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872
GO:GO:0006260 GO:GO:0006281 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
EMBL:CP000237 GenomeReviews:CP000237_GR InterPro:IPR010994
SUPFAM:SSF47781 eggNOG:COG0272 KO:K01972 GO:GO:0003911
PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575 HOGENOM:HOG000218458
OMA:ENVRTIR RefSeq:YP_506384.1 ProteinModelPortal:Q2GDR2
STRING:Q2GDR2 PRIDE:Q2GDR2 GeneID:3931734 KEGG:nse:NSE_0500
PATRIC:22681049 ProtClustDB:CLSK2527991
BioCyc:NSEN222891:GHFU-520-MONOMER Uniprot:Q2GDR2
Length = 670
Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
Identities = 228/679 (33%), Positives = 362/679 (53%)
Query: 20 ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKD-SL--TQHVGLVG 76
E KKE+ ++ D+ + E I+++Y +LL + SL VG
Sbjct: 2 EAKKEIQELYEKLLRHNKKYYQDDSPEITDAEYDSIKDRYLKLLEANPSLGFPVVVGYPA 61
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E + V H M+SL N FS+E+++ + ++ L L +E++ E K DG++ + RY
Sbjct: 62 SEKFQKVKHLSPMLSLRNIFSEEELVEYIEKTKRFLNLKSALEFLCEPKIDGVSFSARYV 121
Query: 137 YGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +TRGD P+ I P+LLEVR EV F+ +
Sbjct: 122 NGKLVSCATRGDGKIGENIIDNMKVINGFPI--EIMDVPDLLEVRGEV------FLDHDT 173
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE-LLNW 255
++ L+ F+NPRNAAAG LRQLNP+I + L +FA+ ++ G+ H E +L++
Sbjct: 174 FQT---LEGFSNPRNAAAGSLRQLNPEITNERNLQYFAYSASKIDGIE----HQEDVLHF 226
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
G S V +++ FY + +R + Y+IDG+VYK+N L +LG S
Sbjct: 227 LSGRGFMTNPLRLASSKVPEIMSFYDSVYRRRSQIKYDIDGLVYKVNDLKLHARLGTLSD 286
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A+A+KF S A T ++ I + +GRTGIITPVA LKP+ I G+ I+RA+L+NE E+
Sbjct: 287 APRWAIAHKFPSHRAKTILEKIKLSVGRTGIITPVAHLKPITIGGVVISRASLYNEDELE 346
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
RK+I+ GD V+V R+G+VIPK+ +S R N + F P+ CP C+S +I + R
Sbjct: 347 RKDIREGDLVIVERAGDVIPKVLEVDISYRTNQER-FIFPDKCPSCSSTLIRKNNEAATR 405
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN--L 493
C+ S +C Q ++H S +A +I G+G I + + D+++++ +
Sbjct: 406 CNNSK-KCPEQVIQQIKHLVSAQAFDIDGIGTSHISFFIEKGFISEPADIFRLDKHRDEI 464
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLE------ 547
+ D K NIL I+ S+ + +FI++LGI+++GE TA LA FK+
Sbjct: 465 KKYDGWGEKSVENILKNIKNSRKISLEKFIFSLGIKNIGEKTAYMLAQQFKSFANWFDKM 524
Query: 548 CMFK---ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGNK 604
M K TE+++ N+ +GS ++ + F + + ++ L + + + N G+
Sbjct: 525 SMLKDDTQTEDEIRNLDGMGSCICESLLDFFSDSDNCNMVKSLSNHVMITDHTVNIGGS- 583
Query: 605 NYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKL 664
L K FVFTG+L + R EA +I+ GG VVN ISK +Y+V G+K G KL KA +L
Sbjct: 584 --LSGKKFVFTGTLLSITREEAKEIIKKAGGIVVNSISKQIDYVVAGEKAGSKLAKANEL 641
Query: 665 NIKILDEKNFVKIVKGFST 683
I I++EK ++ G +T
Sbjct: 642 GIAIIEEKTLIEFTNGNNT 660
Score = 287 (106.1 bits), Expect = 6.7e-22, P = 6.7e-22
Identities = 77/226 (34%), Positives = 116/226 (51%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ EL ++L RHN YY D+P I+D +YD + K+ E P L VG
Sbjct: 7 IQELYEKLLRHNKKYYQDDSPEITDAEYDSIKDRYLKLLEANPSL----GFPVVVGYPAS 62
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
E + V H M+SL N FS+E+++ + ++ L L +E++ E K DG++ + RY
Sbjct: 63 EKFQKVKHLSPMLSLRNIFSEEELVEYIEKTKRFLNLKSALEFLCEPKIDGVSFSARYVN 122
Query: 138 GYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L +TRGD P+ I P+LLEVR EV F+ + +
Sbjct: 123 GKLVSCATRGDGKIGENIIDNMKVINGFPI--EIMDVPDLLEVRGEV------FLDHDTF 174
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
+ L+ F+NPRNAAAG LRQLNP+I + L +FA+ ++ G+
Sbjct: 175 QT---LEGFSNPRNAAAGSLRQLNPEITNERNLQYFAYSASKIDGI 217
>DICTYBASE|DDB_G0282299 [details] [associations]
symbol:DDB_G0282299 "DNA ligase" species:44689
"Dictyostelium discoideum" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003911 "DNA ligase
(NAD+) activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001679 InterPro:IPR003583
InterPro:IPR004150 InterPro:IPR013839 InterPro:IPR013840
InterPro:IPR018239 Pfam:PF01653 Pfam:PF03120 PIRSF:PIRSF001604
PROSITE:PS01056 SMART:SM00278 SMART:SM00532 InterPro:IPR001357
dictyBase:DDB_G0282299 EMBL:AAFI02000047 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SUPFAM:SSF52113 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 GO:GO:0003911 RefSeq:XP_001134548.1
ProteinModelPortal:Q1ZXG5 STRING:Q1ZXG5 EnsemblProtists:DDB0232267
GeneID:8623504 KEGG:ddi:DDB_G0282299 InParanoid:Q1ZXG5 OMA:DINRSPR
Uniprot:Q1ZXG5
Length = 843
Score = 341 (125.1 bits), Expect = 6.9e-48, Sum P(3) = 6.9e-48
Identities = 91/245 (37%), Positives = 144/245 (58%)
Query: 273 VNKLIEFYKKINIK-RFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEAL 331
+ + EF K+ +K R N ++IDG+V K+N ++ Q+ LG +R+PR+A AYKF +K +
Sbjct: 396 IKNIEEFIKEWELKKRENHNWDIDGIVIKVNDINIQRILGDINRSPRWAFAYKFGAKSEI 455
Query: 332 TKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSG 391
+ IK I +Q+G++G ITPVAL++P+ + G+TI+RATL+N S I + NI+IG V++ R+G
Sbjct: 456 STIKDIVLQVGKSGRITPVALVEPIQVHGVTISRATLNNLSYINKLNIKIGSKVLIERAG 515
Query: 392 NVIPKITSSI--------LSLRPNDSK----IFKIP---NI-CPICNSKIIYIESNLIAR 435
+VIPKI +++ + N++ +FK NI CP CN K S L+ R
Sbjct: 516 DVIPKIITNLDDNINNTNTNTNTNNTNNIESLFKCNENGNILCP-CNLK-----SELVNR 569
Query: 436 CSGSWIECIAQRKAG-----LQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI-N 489
C+A+ + F +KAMNI G+GK I+ L+ ++ DLY++
Sbjct: 570 VGYVDYFCVAENCPNQLVQQISWFVDKKAMNIQGVGKSQIQVLLENQLIEDFGDLYELYQ 629
Query: 490 FKNLL 494
FK L
Sbjct: 630 FKEKL 634
Score = 190 (71.9 bits), Expect = 6.9e-48, Sum P(3) = 6.9e-48
Identities = 59/195 (30%), Positives = 92/195 (47%)
Query: 7 KKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKD 66
KK N +++ + EL+ +++R+N YY ISD +YD+L L+ +E+K+ + +
Sbjct: 58 KKNNNNEI-IEIEELRNKINRYNDLYYNKSKSEISDFEYDKLFKRLEILEKKFNQQTITN 116
Query: 67 SLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--KLT-------KN 117
+ + H +M+SL N +S +D+I F +I L K T +
Sbjct: 117 QVGAPISDYSNNRGLKFRHKSRMLSLQNTYSKDDIIAFKNKIEKFLLKKQTSQQQQPQQQ 176
Query: 118 IEYIAELKFDGIAVNLRYEYGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPEL 177
IEY ELK+DGI ++L YE LK+ TRG+ P + N+ P
Sbjct: 177 IEYSLELKYDGIGISLVYENNKLKRVLTRGNGEIGEDITTNALQFI--PSLKNLLTLPSN 234
Query: 178 LEVRCEVLIYK-KDF 191
L V LI K KDF
Sbjct: 235 LTVFILFLILKYKDF 249
Score = 168 (64.2 bits), Expect = 1.8e-28, Sum P(3) = 1.8e-28
Identities = 66/242 (27%), Positives = 112/242 (46%)
Query: 385 VVVHRSGNVIPKITSSILSLRPNDSKIFKIP---NI-CPICNSKIIYIESNLIARCSGSW 440
++ + N+ T++ + N +FK NI CP CN K S L+ R
Sbjct: 521 IITNLDDNINNTNTNTNTNNTNNIESLFKCNENGNILCP-CNLK-----SELVNRVGYVD 574
Query: 441 IECIAQRKAG-----LQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI-NFKN-L 493
C+A+ + F +KAMNI G+GK I+ L+ ++ DLY++ FK L
Sbjct: 575 YFCVAENCPNQLVQQISWFVDKKAMNIQGVGKSQIQVLLENQLIEDFGDLYELYQFKEKL 634
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
L L S+ NN+L +I+ SK + + A+GI +G + +K L+ F++L+ + +
Sbjct: 635 LSLKGFSHTKVNNLLESIEDSKSRGLASLLCAIGIPGIGSSNSKILSEKFQSLDNLINSP 694
Query: 554 EEQLLNIPK-IGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK---GNKNYLKE 609
+ + + +G T ++ F N PL + Q D I+ + N K N N E
Sbjct: 695 SIESIELQSGLGRQTSESIFNFFN-PLDQFE-KQYLDYLIFKFKSNNLKLTHNNNNDNNE 752
Query: 610 KI 611
+I
Sbjct: 753 EI 754
Score = 105 (42.0 bits), Expect = 5.0e-39, Sum P(3) = 5.0e-39
Identities = 42/132 (31%), Positives = 61/132 (46%)
Query: 103 IFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDXXXXXXXXXXXXXX 162
+ K+ + + + + IEY ELK+DGI ++L YE LK+ TRG+
Sbjct: 162 LLKKQTSQQQQPQQQIEYSLELKYDGIGISLVYENNKLKRVLTRGNGEIGEDITTNALQF 221
Query: 163 XXXPLVLNIKYPPELLEVRCEVLIYK-KDF-----IKLNK-YRYHLG-LK-------KFT 207
P + N+ P L V LI K KDF + LNK Y + LK ++
Sbjct: 222 I--PSLKNLLTLPSNLTVFILFLILKYKDFEIRGEVVLNKSYLKIINKLKLDNNDQHQYK 279
Query: 208 NPRNAAAGILRQ 219
N RN +GILR+
Sbjct: 280 NTRNIVSGILRK 291
Score = 93 (37.8 bits), Expect = 6.9e-48, Sum P(3) = 6.9e-48
Identities = 27/78 (34%), Positives = 38/78 (48%)
Query: 596 NNPNTKGNKNYLKEKIFVFTGSLYAFKRNEAIILIEN-LGGKVVNFISKNTNYLVKGQKP 654
NN N + N ++L K V TG R+ I+ KV + I+ T L+ G+KP
Sbjct: 759 NNNNNENNNSFLSNKYIVITGKFKLGDRDFVKDFIQRKFNAKVQSSINSFTQILLIGEKP 818
Query: 655 G-KKLEKAIKLNIKILDE 671
KL KA +L I+I E
Sbjct: 819 AIAKLNKANELGIQIKSE 836
Score = 42 (19.8 bits), Expect = 1.4e-42, Sum P(3) = 1.4e-42
Identities = 30/101 (29%), Positives = 40/101 (39%)
Query: 558 LNIPKIGSTTVKAFI-KF------INQP-LHRL-LISQL-RDVG--IYWLNNPNTKGNKN 605
+ IP IGS+ K KF IN P + + L S L R I+ NP + K
Sbjct: 667 IGIPGIGSSNSKILSEKFQSLDNLINSPSIESIELQSGLGRQTSESIFNFFNPLDQFEKQ 726
Query: 606 YLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTN 646
YL IF F + N E +G N ++N N
Sbjct: 727 YLDYLIFKFKSNNLKLTHNNNNDNNEEIGNNNNNNNNENNN 767
>MGI|MGI:97891 [details] [associations]
symbol:Rfc1 "replication factor C (activator 1) 1"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0043234 "protein complex" evidence=ISO]
[GO:0043565 "sequence-specific DNA binding" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 MGI:MGI:97891 Pfam:PF00533 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0006260 GO:GO:0006351
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 eggNOG:COG5275 CTD:5981
HOVERGEN:HBG004167 OrthoDB:EOG4D26P3 ChiTaRS:RFC1 EMBL:U01222
EMBL:X72711 EMBL:U36441 EMBL:U07157 EMBL:U15037 IPI:IPI00378168
IPI:IPI00896013 PIR:A49393 RefSeq:NP_035388.2 UniGene:Mm.148877
ProteinModelPortal:P35601 SMR:P35601 STRING:P35601
PhosphoSite:P35601 PaxDb:P35601 PRIDE:P35601 GeneID:19687
KEGG:mmu:19687 UCSC:uc008xni.2 UCSC:uc008xnj.2 InParanoid:P35601
NextBio:297020 CleanEx:MM_RFC1 Genevestigator:P35601
GermOnline:ENSMUSG00000029191 Uniprot:P35601
Length = 1131
Score = 162 (62.1 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 37/80 (46%), Positives = 50/80 (62%)
Query: 601 KGNKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGK-KLE 659
KG +N L+ FV TG L + +R+EA LIE GGKV +SK TNYLV G+ G+ K +
Sbjct: 398 KGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSD 457
Query: 660 KAIKLNIKILDEKNFVKIVK 679
KA L KILDE + +++
Sbjct: 458 KAAALGTKILDEDGLLDLIR 477
>UNIPROTKB|P35251 [details] [associations]
symbol:RFC1 "Replication factor C subunit 1" species:9606
"Homo sapiens" [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0006261
"DNA-dependent DNA replication" evidence=TAS] [GO:0007004 "telomere
maintenance via telomerase" evidence=TAS] [GO:0008047 "enzyme
activator activity" evidence=TAS] [GO:0000084 "S phase of mitotic
cell cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle"
evidence=TAS] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0043085 "positive regulation of
catalytic activity" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0006355
GO:GO:0006351 GO:GO:0008047 GO:GO:0000084 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 EMBL:CH471069 GO:GO:0007004
GO:GO:0000722 Pathway_Interaction_DB:faspathway Reactome:REACT_383
GO:GO:0006283 GO:GO:0003689 GO:GO:0006271 GO:GO:0032201
GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754
eggNOG:COG5275 EMBL:L23320 EMBL:Z22642 EMBL:AF040250 EMBL:AY600371
EMBL:AK291612 EMBL:BC035297 EMBL:BC051751 EMBL:BC051786
IPI:IPI00375358 IPI:IPI00375359 PIR:A49651 PIR:JN0599
RefSeq:NP_001191676.1 RefSeq:NP_002904.3 UniGene:Hs.507475 PDB:2EBU
PDB:2K6G PDB:2K7F PDBsum:2EBU PDBsum:2K6G PDBsum:2K7F
ProteinModelPortal:P35251 SMR:P35251 IntAct:P35251 STRING:P35251
PhosphoSite:P35251 DMDM:56757608 PaxDb:P35251 PRIDE:P35251
DNASU:5981 Ensembl:ENST00000349703 Ensembl:ENST00000381897
GeneID:5981 KEGG:hsa:5981 UCSC:uc003gtx.2 UCSC:uc003gty.2 CTD:5981
GeneCards:GC04M039291 HGNC:HGNC:9969 HPA:CAB009520 MIM:102579
neXtProt:NX_P35251 PharmGKB:PA34338 HOGENOM:HOG000013116
HOVERGEN:HBG004167 InParanoid:P35251 OMA:GQINFPG OrthoDB:EOG4D26P3
ChiTaRS:RFC1 EvolutionaryTrace:P35251 GenomeRNAi:5981 NextBio:23281
PMAP-CutDB:P35251 ArrayExpress:P35251 Bgee:P35251 CleanEx:HS_RFC1
Genevestigator:P35251 GermOnline:ENSG00000035928 Uniprot:P35251
Length = 1148
Score = 166 (63.5 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 37/80 (46%), Positives = 51/80 (63%)
Query: 601 KGNKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGK-KLE 659
KG +N L+ IFV TG L + +R+EA LIE GGKV +SK TNYLV G+ G+ K +
Sbjct: 401 KGAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSD 460
Query: 660 KAIKLNIKILDEKNFVKIVK 679
KA L KI+DE + +++
Sbjct: 461 KAAALGTKIIDEDGLLNLIR 480
Score = 41 (19.5 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 457 RKAMNIIGLGKKMIEKLVNAN 477
RK +I GKK++ + V N
Sbjct: 4 RKFFGVIPSGKKLVSETVKKN 24
>UNIPROTKB|F1NEP9 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 EMBL:AADN02015876 EMBL:AADN02015877 EMBL:AADN02015878
EMBL:AADN02015879 EMBL:AADN02015880 IPI:IPI00574416
Ensembl:ENSGALT00000023118 ArrayExpress:F1NEP9 Uniprot:F1NEP9
Length = 1147
Score = 156 (60.0 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 37/80 (46%), Positives = 49/80 (61%)
Query: 601 KGNKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGK-KLE 659
+G +N L+ FV TG L + +R+EA LIE GGKV +SK TNYLV G+ G+ K E
Sbjct: 398 QGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCE 457
Query: 660 KAIKLNIKILDEKNFVKIVK 679
KA L KI+DE +V+
Sbjct: 458 KASTLGTKIIDEDGLFDLVR 477
>UNIPROTKB|E2QW76 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:AAEX03002535
Ensembl:ENSCAFT00000025512 Uniprot:E2QW76
Length = 1152
Score = 156 (60.0 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 35/80 (43%), Positives = 49/80 (61%)
Query: 601 KGNKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGK-KLE 659
KG +N L+ FV TG L + +R+EA LIE GGKV +SK TNYLV G+ G+ K +
Sbjct: 398 KGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSD 457
Query: 660 KAIKLNIKILDEKNFVKIVK 679
KA L I+DE + +++
Sbjct: 458 KAAALGTNIIDEDGLLNLIR 477
>UNIPROTKB|E1C339 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0006260
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:AADN02015876 EMBL:AADN02015877
EMBL:AADN02015878 EMBL:AADN02015879 EMBL:AADN02015880
IPI:IPI00683437 Ensembl:ENSGALT00000029582 ArrayExpress:E1C339
Uniprot:E1C339
Length = 1153
Score = 156 (60.0 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 37/80 (46%), Positives = 49/80 (61%)
Query: 601 KGNKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGK-KLE 659
+G +N L+ FV TG L + +R+EA LIE GGKV +SK TNYLV G+ G+ K E
Sbjct: 402 QGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDCGQSKCE 461
Query: 660 KAIKLNIKILDEKNFVKIVK 679
KA L KI+DE +V+
Sbjct: 462 KASTLGTKIIDEDGLFDLVR 481
>RGD|620619 [details] [associations]
symbol:Rfc1 "replication factor C (activator 1) 1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005663 "DNA replication factor C complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0019904 "protein domain specific
binding" evidence=IPI] [GO:0043234 "protein complex" evidence=IDA]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 RGD:620619 GO:GO:0005524
GO:GO:0005737 GO:GO:0045893 GO:GO:0043234 GO:GO:0005730
GO:GO:0006260 GO:GO:0043565 GO:GO:0000122 GO:GO:0003690
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0003689
HSSP:P26996 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 CTD:5981
HOVERGEN:HBG004167 EMBL:AF030050 IPI:IPI00210191 RefSeq:NP_445999.1
UniGene:Rn.103272 ProteinModelPortal:Q9Z2R7 STRING:Q9Z2R7
GeneID:89809 KEGG:rno:89809 UCSC:RGD:620619 NextBio:617672
Genevestigator:Q9Z2R7 Uniprot:Q9Z2R7
Length = 1104
Score = 148 (57.2 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 35/80 (43%), Positives = 48/80 (60%)
Query: 601 KGNKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGK-KLE 659
KG +N L+ FV TG L + +R EA LIE GGKV +SK T+YLV G+ + K +
Sbjct: 398 KGAENCLEGLTFVITGVLESIEREEAKSLIERYGGKVTGNVSKKTSYLVMGRDSRQSKSD 457
Query: 660 KAIKLNIKILDEKNFVKIVK 679
KA L KILDE + +++
Sbjct: 458 KAAALGTKILDEDGLLDLIR 477
Score = 50 (22.7 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 35/156 (22%), Positives = 61/156 (39%)
Query: 457 RKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKL 516
RK +I GKK + + V N T + K +++ +V+N + Q ++
Sbjct: 4 RKFFGVISSGKKPVNETVKKN-EKTKPSEGTVKGKKGVKVAKVNNPCKEDASRPKQHTEK 62
Query: 517 TTFSRFIYALGIRHVGETTAKELANYFKN-LECMFKATEEQLLNIPKIGSTTVKAFIKFI 575
S RHV AK+ + L + +E ++P I T A ++
Sbjct: 63 RGSSMTQIQNQRRHVQVKDAKKKSEKLPRVLVNLVNLSEGS--SLPHISETDEDAVTFYV 120
Query: 576 N-QPLHRLLISQLRDVGIYWLNNPNTKGNKNYLKEK 610
QP ++ + LR+ +L N K N+ K K
Sbjct: 121 KRQPPNQKRMEYLRNS---YLGASNVKKNEENTKTK 153
>UNIPROTKB|F1S4I7 [details] [associations]
symbol:RFC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 Pfam:PF00533 GO:GO:0005524 GO:GO:0005634
GO:GO:0006260 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 OMA:GQINFPG EMBL:FP089679 Ensembl:ENSSSCT00000009614
Uniprot:F1S4I7
Length = 1146
Score = 157 (60.3 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 36/80 (45%), Positives = 49/80 (61%)
Query: 601 KGNKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGK-KLE 659
KG +N L+ FV TG L + +R+EA LIE GGKV +SK TNYLV G+ G+ K
Sbjct: 399 KGAENCLEGLTFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSG 458
Query: 660 KAIKLNIKILDEKNFVKIVK 679
KA L KI+DE + +++
Sbjct: 459 KAAALGTKIIDEDGLLNLIR 478
Score = 40 (19.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 457 RKAMNIIGLGKKMIEKLVNAN 477
RK ++ GKK++ + V N
Sbjct: 4 RKFFGVVPSGKKLVSETVKKN 24
>ZFIN|ZDB-GENE-070410-99 [details] [associations]
symbol:rfc1 "replication factor C (activator 1) 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
InterPro:IPR012178 InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519
PIRSF:PIRSF036578 SMART:SM00382 InterPro:IPR001357 Pfam:PF00533
ZFIN:ZDB-GENE-070410-99 GO:GO:0005524 GO:GO:0006260 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GeneTree:ENSGT00670000098003
GO:GO:0003689 SUPFAM:SSF48019 GO:GO:0005663 KO:K10754 CTD:5981
EMBL:CR759875 EMBL:BX000461 IPI:IPI00851894 RefSeq:NP_001082960.2
UniGene:Dr.79216 Ensembl:ENSDART00000143948 GeneID:100037336
KEGG:dre:100037336 NextBio:20788508 ArrayExpress:F1Q5P6 Bgee:F1Q5P6
Uniprot:F1Q5P6
Length = 1147
Score = 144 (55.7 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 601 KGNKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPG-KKLE 659
+G +N L+ +FV TG L + +R+EA LIE GGKV +S+ T YLV G+ G K E
Sbjct: 397 QGEENCLEGCVFVLTGVLESMERDEAKSLIERYGGKVTGNVSRKTTYLVLGRDSGVSKTE 456
Query: 660 KAIKLNIKILDEKNFVKIVK 679
KA KI++E + +++
Sbjct: 457 KAESFGTKIINEDELLDLIR 476
>FB|FBgn0004913 [details] [associations]
symbol:Gnf1 "Germ line transcription factor 1" species:7227
"Drosophila melanogaster" [GO:0003677 "DNA binding"
evidence=NAS;IDA] [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0006260 "DNA replication" evidence=IEA;NAS] [GO:0005663 "DNA
replication factor C complex" evidence=IEA;NAS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 Pfam:PF00533 EMBL:AE014297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005875 GO:GO:0022008
GO:GO:0006355 GO:GO:0003677 GO:GO:0006260 GO:GO:0006351
GO:GO:0046331 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0003689 SUPFAM:SSF48019
GO:GO:0005663 KO:K10754 EMBL:L17340 EMBL:U97685 EMBL:AY122077
EMBL:BT003618 RefSeq:NP_001014605.1 RefSeq:NP_524229.1
UniGene:Dm.2491 ProteinModelPortal:P35600 SMR:P35600 DIP:DIP-18735N
IntAct:P35600 MINT:MINT-961959 STRING:P35600 PaxDb:P35600
EnsemblMetazoa:FBtr0078837 GeneID:40607 KEGG:dme:Dmel_CG1119
CTD:100035172 FlyBase:FBgn0004913 eggNOG:COG5275 InParanoid:P35600
OrthoDB:EOG4S1RP9 GenomeRNAi:40607 NextBio:819627 GermOnline:CG1119
Uniprot:P35600
Length = 986
Score = 134 (52.2 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 32/80 (40%), Positives = 46/80 (57%)
Query: 601 KGNKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPG-KKLE 659
KG+ + L FV TG L + +R EA +I+ GGKV+ + K YLV G++ G KKL
Sbjct: 231 KGSPDCLSGLTFVVTGVLESMEREEAESVIKEYGGKVMTVVGKKLKYLVVGEEAGPKKLA 290
Query: 660 KAIKLNIKILDEKNFVKIVK 679
A +LNI IL E +++
Sbjct: 291 VAEELNIPILSEDGLFDLIR 310
>DICTYBASE|DDB_G0285961 [details] [associations]
symbol:rfc1 "replication factor C subunit 1"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003689 "DNA clamp loader activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 InterPro:IPR012178
InterPro:IPR013725 Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578
SMART:SM00382 InterPro:IPR001357 dictyBase:DDB_G0285961
Pfam:PF00533 GO:GO:0005524 GO:GO:0005634 GenomeReviews:CM000153_GR
GO:GO:0006355 GO:GO:0006351 GO:GO:0006298 EMBL:AAFI02000082
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 HSSP:P38630
GO:GO:0003689 eggNOG:COG0272 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 RefSeq:XP_638011.1 ProteinModelPortal:Q54MH9
STRING:Q54MH9 EnsemblProtists:DDB0232230 GeneID:8625362
KEGG:ddi:DDB_G0285961 KO:K10754 OMA:IIELSTW Uniprot:Q54MH9
Length = 1401
Score = 145 (56.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 32/84 (38%), Positives = 51/84 (60%)
Query: 596 NNPNTKGNKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPG 655
+ P +G +N L+ K+F+ +G + F+R+E +I+ GGKV K NYLV G+ G
Sbjct: 631 SKPRPQGKENCLRGKVFLVSGVMDCFERDEMHDIIKRWGGKVAKSAVKLLNYLVSGKDVG 690
Query: 656 -KKLEKAIKLNIKILDEKNFVKIV 678
KKLE A K+ KI+ E F++++
Sbjct: 691 EKKLEGAKKVGAKIITEDEFLEMI 714
Score = 37 (18.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 25/120 (20%), Positives = 45/120 (37%)
Query: 8 KINFSKLSFRVTELKKELHRHNIAYYLYDNPIIS----------DNKYDQLLFELKKIEE 57
K N S T + E + IA +++PI+S D D E K
Sbjct: 325 KSNKSTTPTTTTPITTE--KKKIAQLEFESPIVSITAIDTEKKKDGNKDNKNKEKDKDSS 382
Query: 58 KYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN 117
+ E+ ++S ++ + N+K + + N S D +IF+ + +K N
Sbjct: 383 PFDEMEIEESKSKTIMPNNNNNNKSKESSSSTTNSKNNTSMNDDLIFDDFAFSPIKSGSN 442
>SGD|S000005743 [details] [associations]
symbol:RFC1 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000278 "mitotic cell cycle"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0051301
"cell division" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;IDA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=TAS] [GO:0006281 "DNA
repair" evidence=IMP] [GO:0006272 "leading strand elongation"
evidence=IDA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 InterPro:IPR012178 InterPro:IPR013725
Pfam:PF00004 Pfam:PF08519 PIRSF:PIRSF036578 SMART:SM00382
InterPro:IPR001357 SGD:S000005743 Pfam:PF00533 GO:GO:0005524
GO:GO:0005634 EMBL:BK006948 GO:GO:0051301 GO:GO:0006298 EMBL:X92441
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00670000098003 GO:GO:0000278 GO:GO:0003689
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 PDB:1SXJ PDBsum:1SXJ
KO:K10754 eggNOG:COG5275 HOGENOM:HOG000164552 OMA:KLRMDER
OrthoDB:EOG4WDHM8 EMBL:U03102 EMBL:U26027 EMBL:Z75125 PIR:S44763
RefSeq:NP_014860.1 ProteinModelPortal:P38630 SMR:P38630
DIP:DIP-2527N IntAct:P38630 MINT:MINT-619267 STRING:P38630
PaxDb:P38630 PeptideAtlas:P38630 EnsemblFungi:YOR217W GeneID:854392
KEGG:sce:YOR217W CYGD:YOR217w EvolutionaryTrace:P38630
NextBio:976553 Genevestigator:P38630 GermOnline:YOR217W
Uniprot:P38630
Length = 861
Score = 127 (49.8 bits), Expect = 0.00026, P = 0.00026
Identities = 31/85 (36%), Positives = 45/85 (52%)
Query: 601 KGNKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPG-KKLE 659
+G N L VFTG L +R + L + G +V IS T+ +V G + G KKLE
Sbjct: 152 EGKPNCLLGLTIVFTGVLPTLERGASEALAKRYGARVTKSISSKTSVVVLGDEAGPKKLE 211
Query: 660 KAIKLNIKILDEKNFVKIVKGFSTE 684
K +L IK +DE+ F +++ G E
Sbjct: 212 KIKQLKIKAIDEEGFKQLIAGMPAE 236
>UNIPROTKB|P25772 [details] [associations]
symbol:ligB species:83333 "Escherichia coli K-12"
[GO:0003911 "DNA ligase (NAD+) activity" evidence=IEA;IDA]
[GO:0006266 "DNA ligation" evidence=IDA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
HAMAP:MF_01587 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 InterPro:IPR018239 InterPro:IPR020923
Pfam:PF01653 Pfam:PF03120 PROSITE:PS01055 PROSITE:PS01056
SMART:SM00532 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006260 GO:GO:0006281 EMBL:L10328
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR010994 SUPFAM:SSF47781 eggNOG:COG0272 KO:K01972
GO:GO:0003911 EMBL:M84400 PIR:A65166 RefSeq:NP_418104.2
RefSeq:YP_491787.1 ProteinModelPortal:P25772 SMR:P25772
IntAct:P25772 PRIDE:P25772 DNASU:948164
EnsemblBacteria:EBESCT00000004868 EnsemblBacteria:EBESCT00000018252
GeneID:12933573 GeneID:948164 KEGG:ecj:Y75_p3527 KEGG:eco:b3647
PATRIC:32122781 EchoBASE:EB1310 EcoGene:EG11334
HOGENOM:HOG000267776 OMA:NARSKVA ProtClustDB:PRK08097
BioCyc:EcoCyc:EG11334-MONOMER BioCyc:ECOL316407:JW3622-MONOMER
BioCyc:MetaCyc:EG11334-MONOMER Genevestigator:P25772 Uniprot:P25772
Length = 560
Score = 117 (46.2 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 30/108 (27%), Positives = 56/108 (51%)
Query: 290 LPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITP 349
LP+ DGVV + + + +A + +A+K+ + ++KAI +G++G I+
Sbjct: 272 LPFVTDGVVVRA-AKEPESRHWLPGQA-EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISV 329
Query: 350 VALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKI 397
VA L PV++D + R + + +I GD ++V +G IP+I
Sbjct: 330 VASLAPVMLDDKKVQRVNIGSVRRWQEWDIAPGDQILVSLAGQGIPRI 377
Score = 56 (24.8 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 125 KFDGIAVNLRYEYGYLKQASTRGD 148
K DG+AV L Y G L +A +RG+
Sbjct: 124 KVDGVAVTLVYRDGKLNKAISRGN 147
Score = 37 (18.1 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQL 48
++ L++++ + + Y+ + D YDQL
Sbjct: 34 ISRLQQQIKQWDDDYWKEGKSEVEDGVYDQL 64
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.139 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 687 670 0.00099 120 3 11 22 0.38 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 28
No. of states in DFA: 614 (65 KB)
Total size of DFA: 318 KB (2162 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 56.08u 0.09s 56.17t Elapsed: 00:00:02
Total cpu time: 56.08u 0.10s 56.18t Elapsed: 00:00:02
Start: Thu Aug 15 14:22:44 2013 End: Thu Aug 15 14:22:46 2013