Query psy11422
Match_columns 687
No_of_seqs 287 out of 2011
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 18:02:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11422.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11422hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2owo_A DNA ligase; protein-DNA 100.0 9E-194 3E-198 1646.3 67.3 665 13-679 3-670 (671)
2 1dgs_A DNA ligase; AMP complex 100.0 7E-188 2E-192 1596.7 58.6 654 12-681 4-661 (667)
3 4glx_A DNA ligase; inhibitor, 100.0 4E-175 2E-179 1474.5 64.9 585 11-596 1-585 (586)
4 3sgi_A DNA ligase; HET: DNA AM 100.0 3E-175 1E-179 1474.2 18.5 585 9-597 8-603 (615)
5 3uq8_A DNA ligase; adenylated 100.0 2E-103 8E-108 829.0 33.1 320 14-333 2-322 (322)
6 3jsl_A DNA ligase; NAD+-depend 100.0 9E-102 3E-106 814.6 32.4 312 12-330 2-313 (318)
7 1ta8_A DNA ligase, NAD-depende 100.0 6E-101 2E-105 813.8 35.5 322 9-336 6-327 (332)
8 1b04_A Protein (DNA ligase); D 100.0 8E-101 3E-105 809.3 35.5 315 12-333 4-318 (318)
9 1zau_A DNA ligase; AMP; HET: D 100.0 2.2E-99 7E-104 801.5 22.5 316 10-328 9-328 (328)
10 4glw_A DNA ligase; inhibitor, 100.0 8.7E-98 3E-102 786.7 26.7 305 14-327 1-305 (305)
11 2vug_A PAB1020; RNA, ligase, A 100.0 5E-38 1.7E-42 341.8 -5.6 223 38-330 42-270 (389)
12 2ebu_A Replication factor C su 99.8 1.7E-20 5.9E-25 169.5 11.0 80 603-682 19-99 (112)
13 1l7b_A DNA ligase; BRCT, autos 99.8 8E-21 2.7E-25 166.2 7.7 80 603-683 4-83 (92)
14 2k6g_A Replication factor C su 99.8 1.9E-20 6.5E-25 168.7 10.2 78 603-680 29-107 (109)
15 2cok_A Poly [ADP-ribose] polym 99.7 8.2E-18 2.8E-22 152.2 7.4 74 604-679 8-84 (113)
16 2d8m_A DNA-repair protein XRCC 99.3 2.7E-12 9.2E-17 119.0 8.3 76 604-680 20-95 (129)
17 3l3e_A DNA topoisomerase 2-bin 99.3 5.8E-12 2E-16 112.8 8.6 78 602-680 11-91 (107)
18 3ef0_A RNA polymerase II subun 98.9 2E-09 6.9E-14 116.5 10.7 76 605-680 281-360 (372)
19 3olc_X DNA topoisomerase 2-bin 98.9 2.6E-09 9E-14 112.5 7.7 76 604-680 197-273 (298)
20 3ef1_A RNA polymerase II subun 98.8 9.8E-09 3.4E-13 112.8 8.8 76 605-680 351-430 (442)
21 3l46_A Protein ECT2; alternati 98.7 5.7E-09 2E-13 94.2 4.7 75 605-680 20-94 (112)
22 4id3_A DNA repair protein REV1 98.7 1.6E-08 5.4E-13 87.2 7.3 75 603-680 4-80 (92)
23 2a1j_B DNA excision repair pro 98.7 1.5E-08 5.3E-13 87.9 5.8 66 514-579 22-88 (91)
24 3olc_X DNA topoisomerase 2-bin 98.6 3.9E-08 1.3E-12 103.6 8.2 75 604-679 103-177 (298)
25 2cou_A ECT2 protein; BRCT doma 98.6 2.9E-08 9.8E-13 89.2 4.1 76 604-680 10-85 (109)
26 1z00_A DNA excision repair pro 98.6 1.2E-07 4E-12 81.9 7.5 60 519-578 14-74 (89)
27 1x2i_A HEF helicase/nuclease; 98.4 3.9E-07 1.3E-11 75.6 6.6 55 526-580 17-71 (75)
28 2a1j_A DNA repair endonuclease 98.3 3.5E-07 1.2E-11 74.0 4.3 51 526-578 7-58 (63)
29 1kft_A UVRC, excinuclease ABC 98.3 5.2E-07 1.8E-11 75.9 4.6 51 526-576 27-77 (78)
30 1fvi_A Chlorella virus DNA lig 98.3 8.5E-06 2.9E-10 85.6 14.1 200 118-376 19-257 (297)
31 2ebw_A DNA repair protein REV1 98.2 4.4E-06 1.5E-10 72.8 8.0 75 603-680 9-84 (97)
32 1z00_B DNA repair endonuclease 98.1 2E-06 6.8E-11 73.5 4.8 52 526-579 21-73 (84)
33 3gde_A DNA ligase; DNA-binding 98.1 5.1E-05 1.7E-09 86.3 16.3 215 119-377 246-479 (558)
34 1vs0_A Putative DNA ligase-lik 98.0 5.7E-05 1.9E-09 79.8 15.4 203 118-376 25-241 (310)
35 3pa6_A Microcephalin; BRCT dom 98.0 1.7E-05 5.8E-10 70.9 9.1 76 605-680 6-84 (107)
36 2cfm_A Thermostable DNA ligase 97.9 0.00012 4.1E-09 83.4 16.7 216 119-376 243-478 (561)
37 1a0i_A DNA ligase; DNA replica 97.9 0.00017 5.9E-09 77.2 16.0 230 119-376 27-289 (348)
38 3c65_A Uvrabc system protein C 97.9 1.6E-06 5.6E-11 87.2 0.0 50 526-576 176-225 (226)
39 2nrt_A Uvrabc system protein C 97.9 5.8E-06 2E-10 82.8 3.9 49 526-576 171-220 (220)
40 2bgw_A XPF endonuclease; hydro 97.9 1.5E-05 5.2E-10 79.9 6.5 53 526-578 165-217 (219)
41 3l2p_A DNA ligase 3; DNA ligas 97.9 0.00022 7.6E-09 81.4 16.9 234 86-377 227-487 (579)
42 3qwu_A DNA ligase; structural 97.8 0.00013 4.6E-09 78.0 13.7 143 118-303 73-222 (370)
43 2hiv_A Thermostable DNA ligase 97.8 0.0002 6.8E-09 82.5 15.2 217 119-376 274-516 (621)
44 1x9n_A DNA ligase I; 5'-adenyl 97.8 0.00035 1.2E-08 81.3 17.1 220 118-376 330-576 (688)
45 4gfj_A Topoisomerase V; helix- 97.8 3.9E-05 1.3E-09 81.7 7.8 100 460-573 413-517 (685)
46 1kzy_C Tumor suppressor P53-bi 97.7 7.4E-05 2.5E-09 76.9 8.7 78 603-680 12-124 (259)
47 3sqd_A PAX-interacting protein 97.7 6.1E-05 2.1E-09 75.6 7.1 74 605-680 12-86 (219)
48 2vxb_A DNA repair protein RHP9 97.6 0.00012 4.1E-09 74.6 8.5 75 606-680 2-105 (241)
49 3pc6_A DNA repair protein XRCC 97.6 0.00028 9.7E-09 62.6 9.4 77 604-680 5-83 (104)
50 1ixr_A Holliday junction DNA h 97.5 0.0001 3.5E-09 72.5 6.7 73 491-577 54-129 (191)
51 1ckm_A MRNA capping enzyme; nu 97.5 0.00077 2.6E-08 71.7 12.7 151 119-326 76-238 (330)
52 1cuk_A RUVA protein; DNA repai 97.4 0.00012 4E-09 72.8 5.7 73 491-577 55-130 (203)
53 1l0b_A BRCA1; TANDEM-BRCT, thr 97.4 0.00029 9.9E-09 70.5 7.9 74 606-680 4-83 (229)
54 3c1y_A DNA integrity scanning 97.4 0.0002 6.8E-09 76.8 6.5 52 527-578 319-370 (377)
55 3ii6_X DNA ligase 4; XRCC4, NH 97.3 0.00057 1.9E-08 70.4 9.4 76 603-680 7-84 (263)
56 1wf6_A Similar to S.pombe -RAD 97.3 0.00085 2.9E-08 61.8 9.6 75 604-680 38-115 (132)
57 1t15_A Breast cancer type 1 su 97.3 0.00034 1.2E-08 68.9 7.0 72 608-680 3-80 (214)
58 3vnn_A DNA ligase 4; non-homol 97.2 0.00068 2.3E-08 63.2 7.9 117 120-259 1-125 (139)
59 2nte_A BARD-1, BRCA1-associate 97.2 0.00053 1.8E-08 67.9 7.1 71 609-680 2-75 (210)
60 1kft_A UVRC, excinuclease ABC 97.2 0.00017 5.8E-09 60.4 2.9 53 458-512 25-77 (78)
61 1x2i_A HEF helicase/nuclease; 97.0 0.00069 2.4E-08 55.6 5.2 56 459-516 16-71 (75)
62 1wcn_A Transcription elongatio 97.0 0.00091 3.1E-08 55.0 5.8 56 456-512 6-61 (70)
63 1vq8_Y 50S ribosomal protein L 97.0 9.9E-05 3.4E-09 75.1 -0.4 58 458-516 16-73 (241)
64 1z00_A DNA excision repair pro 97.0 0.00087 3E-08 57.4 5.7 52 460-513 22-73 (89)
65 2etx_A Mediator of DNA damage 97.0 0.0011 3.9E-08 65.6 7.2 71 605-680 8-79 (209)
66 2a1j_B DNA excision repair pro 97.0 0.00078 2.7E-08 58.0 5.1 52 460-513 35-86 (91)
67 1l0b_A BRCA1; TANDEM-BRCT, thr 96.8 0.0022 7.5E-08 64.0 7.9 76 605-680 116-201 (229)
68 2w9m_A Polymerase X; SAXS, DNA 96.8 0.00067 2.3E-08 77.5 4.3 56 458-514 98-154 (578)
69 2ztd_A Holliday junction ATP-d 96.6 0.0028 9.6E-08 63.1 6.8 51 527-577 92-145 (212)
70 2w9m_A Polymerase X; SAXS, DNA 96.6 0.0025 8.5E-08 72.8 7.1 84 492-575 58-151 (578)
71 1t15_A Breast cancer type 1 su 96.6 0.0034 1.2E-07 61.7 7.2 77 604-680 113-199 (214)
72 2etx_A Mediator of DNA damage 96.6 0.0047 1.6E-07 61.1 8.1 76 605-681 114-192 (209)
73 3b0x_A DNA polymerase beta fam 96.6 0.0013 4.3E-08 75.2 4.4 57 458-514 94-151 (575)
74 3al2_A DNA topoisomerase 2-bin 96.5 0.0047 1.6E-07 62.5 7.7 72 607-679 7-81 (235)
75 3sqd_A PAX-interacting protein 96.5 0.0056 1.9E-07 61.2 8.0 75 605-680 121-208 (219)
76 1vq8_Y 50S ribosomal protein L 96.5 0.00047 1.6E-08 70.1 0.0 52 526-577 18-70 (241)
77 2a1j_A DNA repair endonuclease 96.4 0.0026 9E-08 51.1 4.1 50 460-513 7-57 (63)
78 2duy_A Competence protein come 96.3 0.0017 5.8E-08 53.7 2.9 24 552-575 50-73 (75)
79 1u9l_A Transcription elongatio 96.3 0.0045 1.5E-07 50.8 5.2 53 460-513 9-61 (70)
80 3u3z_A Microcephalin; DNA repa 96.3 0.0058 2E-07 60.2 7.1 71 608-679 10-82 (199)
81 3b0x_A DNA polymerase beta fam 96.3 0.0092 3.2E-07 68.1 9.7 118 459-576 16-149 (575)
82 1kzy_C Tumor suppressor P53-bi 96.3 0.009 3.1E-07 61.3 8.4 77 604-680 153-240 (259)
83 1b22_A DNA repair protein RAD5 96.1 0.0046 1.6E-07 55.6 4.7 50 464-514 32-81 (114)
84 2nte_A BARD-1, BRCA1-associate 96.0 0.0086 2.9E-07 59.1 6.3 78 604-681 102-203 (210)
85 2hvq_A ORF1, hypothetical 37.6 96.0 0.034 1.2E-06 59.1 11.3 138 89-267 6-154 (335)
86 4glx_A DNA ligase; inhibitor, 95.8 0.0055 1.9E-07 69.7 4.8 80 458-545 481-566 (586)
87 1z3e_B DNA-directed RNA polyme 95.8 0.015 5.2E-07 48.1 6.2 52 461-513 12-63 (73)
88 1p16_A GTP--RNA, mRNA capping 95.8 0.018 6.3E-07 62.5 8.7 174 119-340 61-260 (395)
89 3u3z_A Microcephalin; DNA repa 95.8 0.01 3.6E-07 58.3 6.0 70 604-680 117-186 (199)
90 3l41_A BRCT-containing protein 95.6 0.011 3.8E-07 59.2 5.5 68 608-680 7-75 (220)
91 1z00_B DNA repair endonuclease 95.6 0.0075 2.5E-07 51.3 3.5 51 459-513 20-71 (84)
92 2owo_A DNA ligase; protein-DNA 95.6 0.0069 2.4E-07 69.9 4.4 80 458-545 481-566 (671)
93 3sgi_A DNA ligase; HET: DNA AM 95.5 0.0024 8.1E-08 72.9 0.0 68 459-528 531-598 (615)
94 1dgs_A DNA ligase; AMP complex 95.5 0.012 4.3E-07 67.8 5.9 68 459-528 509-576 (667)
95 3gfk_B DNA-directed RNA polyme 95.4 0.024 8.3E-07 47.5 6.0 50 463-513 21-70 (79)
96 1s68_A RNA ligase 2; ribonucle 95.3 0.067 2.3E-06 54.5 10.1 148 90-278 6-163 (249)
97 3k4g_A DNA-directed RNA polyme 95.2 0.027 9.1E-07 48.0 5.7 50 463-513 17-66 (86)
98 1ixr_A Holliday junction DNA h 95.2 0.012 4E-07 57.8 4.0 54 459-512 74-128 (191)
99 4gfj_A Topoisomerase V; helix- 95.2 0.016 5.5E-07 62.0 5.0 108 460-572 471-617 (685)
100 2bgw_A XPF endonuclease; hydro 95.1 0.017 5.7E-07 57.5 4.7 53 459-513 164-216 (219)
101 1cuk_A RUVA protein; DNA repai 95.0 0.02 7E-07 56.6 4.9 55 459-513 75-130 (203)
102 2duy_A Competence protein come 94.7 0.0088 3E-07 49.4 1.3 42 459-508 29-70 (75)
103 1wcn_A Transcription elongatio 94.6 0.061 2.1E-06 44.0 6.0 48 527-574 11-59 (70)
104 3kyh_C MRNA-capping enzyme sub 94.5 0.18 6E-06 55.7 11.3 146 118-306 65-238 (461)
105 2ztd_A Holliday junction ATP-d 94.3 0.02 6.7E-07 57.0 2.9 54 460-513 91-145 (212)
106 3rtx_A MRNA-capping enzyme; gu 94.2 0.068 2.3E-06 57.0 7.2 155 119-329 64-241 (343)
107 1s5l_U Photosystem II 12 kDa e 94.1 0.022 7.7E-07 52.2 2.7 56 482-575 54-109 (134)
108 1coo_A RNA polymerase alpha su 93.9 0.05 1.7E-06 47.5 4.4 50 463-513 29-78 (98)
109 2bcq_A DNA polymerase lambda; 93.9 0.051 1.7E-06 57.8 5.4 63 491-553 57-127 (335)
110 1z56_C DNA ligase IV; DNA repa 93.9 0.0044 1.5E-07 63.4 -2.8 75 604-679 3-88 (264)
111 2edu_A Kinesin-like protein KI 93.7 0.056 1.9E-06 46.9 4.4 31 482-512 31-61 (98)
112 2edu_A Kinesin-like protein KI 93.6 0.1 3.5E-06 45.3 5.8 42 527-573 44-88 (98)
113 1pu6_A 3-methyladenine DNA gly 93.5 0.36 1.2E-05 48.0 10.5 82 468-575 50-141 (218)
114 2h56_A DNA-3-methyladenine gly 93.4 0.23 7.9E-06 49.9 9.0 81 468-574 71-157 (233)
115 2csb_A Topoisomerase V, TOP61; 93.3 0.25 8.6E-06 50.0 8.8 113 443-559 363-504 (519)
116 3c1y_A DNA integrity scanning 93.0 0.081 2.8E-06 56.8 5.2 52 461-514 319-370 (377)
117 2fmp_A DNA polymerase beta; nu 93.0 0.15 5E-06 54.2 7.0 62 491-552 57-128 (335)
118 3arc_U Photosystem II 12 kDa e 92.9 0.047 1.6E-06 47.6 2.5 56 483-576 18-73 (97)
119 3c65_A Uvrabc system protein C 92.7 0.021 7.1E-07 57.3 0.0 51 459-512 175-225 (226)
120 1jms_A Terminal deoxynucleotid 92.1 0.17 5.9E-06 54.6 6.3 101 443-551 38-150 (381)
121 2yg9_A DNA-3-methyladenine gly 92.0 0.48 1.7E-05 47.3 9.1 83 467-575 80-166 (225)
122 4b21_A Probable DNA-3-methylad 91.9 0.71 2.4E-05 46.4 10.2 82 469-575 81-170 (232)
123 2ihm_A POL MU, DNA polymerase 91.9 0.21 7.3E-06 53.5 6.6 100 443-550 19-130 (360)
124 1u9l_A Transcription elongatio 91.4 0.36 1.2E-05 39.4 6.0 52 521-575 7-59 (70)
125 1s5l_U Photosystem II 12 kDa e 91.2 0.28 9.7E-06 45.0 5.7 46 459-512 65-110 (134)
126 2ep8_A Pescadillo homolog 1; A 91.2 0.54 1.8E-05 41.0 7.3 71 603-680 9-90 (100)
127 3arc_U Photosystem II 12 kDa e 91.1 0.18 6.2E-06 43.9 4.1 48 458-513 27-74 (97)
128 1jms_A Terminal deoxynucleotid 90.5 0.12 4.1E-06 55.9 3.1 44 459-513 123-166 (381)
129 1b22_A DNA repair protein RAD5 90.0 0.23 7.7E-06 44.6 3.9 46 530-575 32-78 (114)
130 2nrt_A Uvrabc system protein C 89.2 0.17 5.9E-06 50.4 2.7 49 459-511 170-219 (220)
131 2ihm_A POL MU, DNA polymerase 89.2 0.38 1.3E-05 51.6 5.6 50 524-573 62-120 (360)
132 2fmp_A DNA polymerase beta; nu 89.0 0.34 1.2E-05 51.4 5.1 34 458-493 99-132 (335)
133 1z56_C DNA ligase IV; DNA repa 88.8 0.19 6.6E-06 51.0 2.8 77 604-680 158-250 (264)
134 2i1q_A DNA repair and recombin 88.7 0.55 1.9E-05 48.8 6.4 56 458-514 4-59 (322)
135 1kea_A Possible G-T mismatches 87.6 1.5 5.2E-05 43.5 8.5 76 469-575 56-135 (221)
136 3i0w_A 8-oxoguanine-DNA-glycos 87.3 1.3 4.4E-05 46.0 8.0 68 480-574 159-230 (290)
137 3al2_A DNA topoisomerase 2-bin 87.3 1.4 4.9E-05 44.1 8.2 74 605-680 134-217 (235)
138 2zj8_A DNA helicase, putative 87.0 0.69 2.3E-05 53.7 6.4 52 459-511 648-699 (720)
139 2kz3_A Putative uncharacterize 86.8 1.3 4.3E-05 37.4 6.2 53 460-513 6-59 (83)
140 2jw5_A DNA polymerase lambda; 86.7 0.68 2.3E-05 40.7 4.7 77 604-680 9-92 (106)
141 2bcq_A DNA polymerase lambda; 86.4 0.75 2.6E-05 48.8 5.7 74 499-573 34-114 (335)
142 3oq4_A DBF4, protein DNA52; DD 86.3 2 6.9E-05 39.3 7.7 58 623-680 32-97 (134)
143 3s6i_A DNA-3-methyladenine gly 86.2 1.7 5.8E-05 43.4 8.0 71 479-574 84-158 (228)
144 3pc7_A DNA ligase 3; DNA repai 86.1 1.7 5.7E-05 37.1 6.6 67 604-680 14-81 (88)
145 1pzn_A RAD51, DNA repair and r 85.7 0.92 3.1E-05 48.1 6.0 54 459-513 37-90 (349)
146 1xdn_A RNA editing ligase MP52 84.9 1.4 4.8E-05 45.2 6.6 199 88-303 10-244 (277)
147 1orn_A Endonuclease III; DNA r 84.9 2.8 9.5E-05 41.7 8.8 41 470-512 55-98 (226)
148 3ii6_X DNA ligase 4; XRCC4, NH 84.3 1.8 6E-05 44.1 7.2 77 604-680 162-252 (263)
149 2coe_A Deoxynucleotidyltransfe 83.6 4.1 0.00014 36.6 8.4 77 604-680 18-102 (120)
150 2vxb_A DNA repair protein RHP9 82.8 2.2 7.6E-05 42.9 7.1 72 604-680 149-235 (241)
151 3l41_A BRCT-containing protein 82.7 2.3 7.8E-05 42.2 7.1 74 605-678 112-201 (220)
152 3bqs_A Uncharacterized protein 81.6 3.5 0.00012 35.4 6.8 29 458-487 5-33 (93)
153 3im1_A Protein SNU246, PRE-mRN 81.2 2.7 9.1E-05 44.1 7.3 55 458-513 158-212 (328)
154 2csb_A Topoisomerase V, TOP61; 80.8 4.6 0.00016 40.9 8.3 105 459-573 356-465 (519)
155 1rxw_A Flap structure-specific 80.7 2.9 9.9E-05 44.1 7.4 93 456-552 142-264 (336)
156 2abk_A Endonuclease III; DNA-r 80.5 2.4 8.1E-05 41.7 6.2 66 480-574 59-128 (211)
157 3huf_A DNA repair and telomere 80.3 2.9 9.8E-05 43.8 6.9 57 623-679 126-186 (325)
158 4e9f_A Methyl-CPG-binding doma 79.9 0.97 3.3E-05 42.9 3.0 73 468-577 51-126 (161)
159 2jhn_A ALKA, 3-methyladenine D 79.7 2.9 0.0001 43.2 6.9 64 480-574 162-229 (295)
160 1kg2_A A/G-specific adenine gl 77.9 4.2 0.00014 40.3 7.2 65 480-574 60-128 (225)
161 3lda_A DNA repair protein RAD5 77.9 3.2 0.00011 44.9 6.8 55 458-513 84-138 (400)
162 1exn_A 5'-exonuclease, 5'-nucl 77.8 1.8 6.1E-05 44.9 4.5 25 527-551 207-231 (290)
163 2va8_A SSO2462, SKI2-type heli 77.5 2.4 8.2E-05 48.9 6.0 51 459-513 659-709 (715)
164 4dez_A POL IV 1, DNA polymeras 76.9 2.2 7.4E-05 45.3 5.0 50 458-510 179-228 (356)
165 2ziu_A MUS81 protein; helix-ha 76.7 2 6.9E-05 44.7 4.6 64 514-577 226-306 (311)
166 3n5n_X A/G-specific adenine DN 76.1 6.8 0.00023 40.5 8.3 22 553-574 126-148 (287)
167 2zj8_A DNA helicase, putative 76.0 3.2 0.00011 48.0 6.6 51 526-576 649-700 (720)
168 2dun_A POL MU, DNA polymerase 75.7 3.4 0.00012 37.8 5.2 76 605-680 9-95 (133)
169 3oq0_A DBF4, protein DNA52; DD 75.6 10 0.00035 35.3 8.4 57 624-680 50-114 (151)
170 3sei_A Caskin-1; SAM domain, p 73.9 7.5 0.00026 36.1 7.3 91 467-564 23-123 (149)
171 3j20_Y 30S ribosomal protein S 73.0 2 6.9E-05 32.6 2.5 24 415-438 19-42 (50)
172 2p6r_A Afuhel308 helicase; pro 72.7 2.2 7.5E-05 49.2 4.1 50 459-512 634-683 (702)
173 2i5h_A Hypothetical protein AF 72.2 2.2 7.4E-05 41.8 3.1 27 487-513 128-154 (205)
174 2xhi_A N-glycosylase/DNA lyase 71.9 7.3 0.00025 41.6 7.5 21 554-574 252-272 (360)
175 3mab_A Uncharacterized protein 71.7 8.8 0.0003 32.9 6.6 29 459-488 6-34 (93)
176 2c5u_A RNA ligase, T4 RNA liga 71.2 1.8 6.2E-05 46.5 2.6 57 83-147 65-121 (375)
177 3osn_A DNA polymerase IOTA; ho 71.0 3.3 0.00011 45.1 4.7 47 460-509 237-283 (420)
178 1pft_A TFIIB, PFTFIIBN; N-term 70.7 2.6 9E-05 31.6 2.7 22 417-438 7-29 (50)
179 1jx4_A DNA polymerase IV (fami 69.8 3.4 0.00012 43.6 4.4 61 444-510 168-228 (352)
180 3fsp_A A/G-specific adenine gl 69.3 10 0.00036 40.2 8.1 68 471-541 62-136 (369)
181 2js4_A UPF0434 protein BB2007; 68.7 2.9 9.7E-05 34.1 2.7 22 417-438 10-31 (70)
182 3n0u_A Probable N-glycosylase/ 67.7 4.2 0.00014 40.3 4.3 58 519-577 87-152 (219)
183 2pk7_A Uncharacterized protein 67.7 3.1 0.00011 33.8 2.7 22 417-438 10-31 (69)
184 3bq0_A POL IV, DBH, DNA polyme 67.7 3.5 0.00012 43.6 3.9 49 459-510 181-229 (354)
185 2hf1_A Tetraacyldisaccharide-1 67.6 3.1 0.00011 33.7 2.7 22 417-438 10-31 (68)
186 2jr6_A UPF0434 protein NMA0874 66.3 3.3 0.00011 33.5 2.6 22 417-438 10-31 (68)
187 3qbz_A DDK kinase regulatory s 66.2 20 0.00067 33.7 8.1 56 626-681 90-153 (160)
188 3gqc_A DNA repair protein REV1 66.1 4.7 0.00016 45.0 4.7 48 459-509 317-364 (504)
189 2kiv_A Ankyrin repeat and ster 65.2 15 0.0005 33.9 7.2 92 468-564 28-133 (148)
190 2q0z_X Protein Pro2281; SEC63, 64.9 8.1 0.00028 40.6 6.1 50 458-508 162-211 (339)
191 4f4y_A POL IV, DNA polymerase 64.7 3.2 0.00011 44.2 2.9 49 459-510 181-229 (362)
192 3fhf_A Mjogg, N-glycosylase/DN 64.1 7.5 0.00025 38.4 5.2 57 518-575 80-145 (214)
193 2kpi_A Uncharacterized protein 63.4 4.4 0.00015 31.5 2.7 23 417-443 12-34 (56)
194 2z43_A DNA repair and recombin 63.3 1.5 5.1E-05 45.7 0.0 52 461-513 16-67 (324)
195 4f92_B U5 small nuclear ribonu 63.3 9.4 0.00032 48.9 7.2 55 458-513 1558-1612(1724)
196 1ltl_A DNA replication initiat 62.8 4.5 0.00015 41.5 3.5 44 381-424 110-165 (279)
197 2jny_A Uncharacterized BCR; st 62.7 4.4 0.00015 32.7 2.7 23 416-438 11-33 (67)
198 2va8_A SSO2462, SKI2-type heli 62.5 3.9 0.00013 47.2 3.3 50 523-575 657-707 (715)
199 3q8k_A Flap endonuclease 1; he 62.2 4.2 0.00014 43.0 3.2 25 527-551 236-260 (341)
200 3pjy_A Hypothetical signal pep 60.1 8.8 0.0003 35.2 4.6 88 299-387 24-126 (136)
201 4e9f_A Methyl-CPG-binding doma 60.1 10 0.00035 35.7 5.2 14 527-540 108-121 (161)
202 2vl6_A SSO MCM N-TER, minichro 60.1 5.1 0.00017 40.7 3.3 43 381-423 117-176 (268)
203 3lu0_A DNA-directed RNA polyme 59.7 1.9 6.5E-05 45.5 0.0 49 464-513 261-309 (329)
204 3im1_A Protein SNU246, PRE-mRN 59.3 8.1 0.00028 40.4 4.8 51 526-576 160-211 (328)
205 1mpg_A ALKA, 3-methyladenine D 59.0 16 0.00056 37.2 7.0 32 480-512 156-187 (282)
206 2aq4_A DNA repair protein REV1 58.8 5.4 0.00018 43.5 3.4 48 459-509 243-293 (434)
207 2i5h_A Hypothetical protein AF 55.3 2.7 9.3E-05 41.1 0.3 37 527-566 136-173 (205)
208 2i1q_A DNA repair and recombin 55.3 17 0.00059 37.3 6.5 49 527-575 7-56 (322)
209 3vdp_A Recombination protein R 54.8 4.8 0.00017 39.6 1.9 21 491-511 26-46 (212)
210 4esj_A Type-2 restriction enzy 53.9 5.8 0.0002 39.7 2.3 28 416-447 35-66 (257)
211 2a6h_A DNA-directed RNA polyme 53.7 2.7 9.4E-05 44.0 0.0 47 465-512 261-307 (315)
212 1vq8_Z 50S ribosomal protein L 53.4 5.4 0.00019 33.5 1.8 24 415-438 27-50 (83)
213 3ory_A Flap endonuclease 1; hy 53.0 4.6 0.00016 43.2 1.6 26 527-552 255-280 (363)
214 2k4x_A 30S ribosomal protein S 52.9 6.5 0.00022 30.4 2.0 24 415-438 18-41 (55)
215 3m7a_A Uncharacterized protein 52.1 15 0.0005 33.9 4.6 87 299-386 38-139 (140)
216 2izo_A FEN1, flap structure-sp 52.0 6.3 0.00021 41.7 2.5 26 527-552 238-263 (346)
217 1z3e_B DNA-directed RNA polyme 51.9 16 0.00053 29.9 4.3 33 542-574 28-60 (73)
218 3k4g_A DNA-directed RNA polyme 51.7 16 0.00053 30.9 4.3 33 542-574 31-63 (86)
219 2zix_A Crossover junction endo 51.4 2.4 8.2E-05 44.1 -0.9 16 562-577 287-302 (307)
220 4ecq_A DNA polymerase ETA; tra 51.3 6.6 0.00023 42.9 2.6 49 459-509 255-303 (435)
221 1t94_A Polymerase (DNA directe 51.0 11 0.00037 41.4 4.2 47 459-509 284-330 (459)
222 1vdd_A Recombination protein R 49.4 5.9 0.0002 39.4 1.6 18 603-620 96-113 (228)
223 3fhg_A Mjogg, N-glycosylase/DN 48.8 25 0.00084 34.2 6.0 23 553-575 115-137 (207)
224 1dl6_A Transcription factor II 48.5 13 0.00044 28.9 3.1 27 412-438 8-35 (58)
225 3gfk_B DNA-directed RNA polyme 48.2 13 0.00046 30.8 3.3 51 520-574 15-67 (79)
226 1b43_A Protein (FEN-1); nuclea 47.0 9.1 0.00031 40.3 2.7 26 527-552 241-266 (340)
227 1ul1_X Flap endonuclease-1; pr 46.4 11 0.00039 40.2 3.5 26 527-552 236-261 (379)
228 2kz3_A Putative uncharacterize 46.3 26 0.0009 29.3 4.9 50 526-575 6-57 (83)
229 1v5w_A DMC1, meiotic recombina 46.3 4.2 0.00014 42.8 -0.0 54 459-513 29-82 (343)
230 3psf_A Transcription elongatio 44.4 24 0.00084 42.6 6.1 48 527-575 721-768 (1030)
231 3f9v_A Minichromosome maintena 44.3 12 0.00041 42.5 3.3 39 386-424 120-171 (595)
232 3pzp_A DNA polymerase kappa; D 44.1 16 0.00053 40.9 4.2 46 459-508 340-385 (517)
233 3m7n_A Putative uncharacterize 44.0 12 0.00042 35.7 2.9 51 378-438 111-161 (179)
234 1pzn_A RAD51, DNA repair and r 43.6 19 0.00064 37.9 4.5 49 527-575 39-88 (349)
235 2kp7_A Crossover junction endo 43.4 15 0.00051 31.0 3.0 25 553-577 56-80 (87)
236 2hc8_A PACS, cation-transporti 42.8 10 0.00035 33.4 1.9 23 374-397 25-47 (113)
237 3bzc_A TEX; helix-turn-helix, 42.6 11 0.00038 44.2 2.8 56 484-541 501-556 (785)
238 1lko_A Rubrerythrin all-iron(I 41.4 8.6 0.00029 37.2 1.3 11 414-424 170-180 (191)
239 1l8d_A DNA double-strand break 41.3 7.2 0.00025 34.1 0.7 12 415-426 47-58 (112)
240 3s6i_A DNA-3-methyladenine gly 40.7 29 0.00099 34.4 5.1 33 476-508 120-156 (228)
241 3u6p_A Formamidopyrimidine-DNA 40.5 14 0.00047 37.9 2.8 22 417-438 247-270 (273)
242 4b21_A Probable DNA-3-methylad 40.5 35 0.0012 33.9 5.7 33 476-508 131-167 (232)
243 1vk6_A NADH pyrophosphatase; 1 40.4 13 0.00044 37.8 2.6 25 414-438 106-130 (269)
244 3um3_B Charged multivesicular 40.4 76 0.0026 27.6 7.1 52 7-58 1-54 (104)
245 3qe9_Y Exonuclease 1; exonucle 40.3 34 0.0012 36.2 5.9 26 527-552 229-256 (352)
246 3pwf_A Rubrerythrin; non heme 40.2 9.6 0.00033 36.2 1.4 11 414-424 152-162 (170)
247 1ee8_A MUTM (FPG) protein; bet 39.9 14 0.00047 37.7 2.7 23 416-438 236-260 (266)
248 1im4_A DBH; DNA polymerase PAL 39.6 11 0.00039 37.1 2.0 35 459-494 186-220 (221)
249 3psi_A Transcription elongatio 39.6 33 0.0011 42.3 6.3 49 527-576 718-766 (1219)
250 2jne_A Hypothetical protein YF 39.2 17 0.0006 31.3 2.7 23 416-438 62-86 (101)
251 1coo_A RNA polymerase alpha su 38.5 29 0.00099 30.0 4.1 33 542-574 43-75 (98)
252 1k82_A Formamidopyrimidine-DNA 38.4 15 0.00053 37.3 2.8 22 417-438 242-265 (268)
253 2xzf_A Formamidopyrimidine-DNA 38.2 16 0.00053 37.4 2.8 22 417-438 244-267 (271)
254 1k3x_A Endonuclease VIII; hydr 37.9 16 0.00054 37.1 2.8 22 417-438 236-259 (262)
255 3lk7_A UDP-N-acetylmuramoylala 37.4 87 0.003 33.8 8.8 52 627-678 49-109 (451)
256 4hv4_A UDP-N-acetylmuramate--L 37.4 95 0.0032 34.0 9.2 50 628-678 61-118 (494)
257 3h0g_I DNA-directed RNA polyme 35.3 15 0.00052 32.4 1.8 28 415-446 4-35 (113)
258 3eag_A UDP-N-acetylmuramate:L- 35.0 72 0.0025 32.8 7.4 51 627-677 43-102 (326)
259 2fhd_A RAD9 homolog, DNA repai 34.9 5.2 0.00018 37.1 -1.3 40 356-402 44-83 (153)
260 2lcq_A Putative toxin VAPC6; P 34.7 12 0.00042 34.9 1.3 13 416-428 149-161 (165)
261 3n0u_A Probable N-glycosylase/ 34.7 38 0.0013 33.4 4.8 64 482-545 76-152 (219)
262 2l42_A DNA-binding protein RAP 34.2 26 0.00089 30.4 3.0 68 603-679 8-82 (106)
263 3fhg_A Mjogg, N-glycosylase/DN 34.1 58 0.002 31.5 6.0 62 483-544 60-138 (207)
264 4dez_A POL IV 1, DNA polymeras 33.7 47 0.0016 34.8 5.7 75 498-574 143-228 (356)
265 4f92_B U5 small nuclear ribonu 33.3 43 0.0015 42.9 6.2 51 526-576 1560-1611(1724)
266 1exn_A 5'-exonuclease, 5'-nucl 33.2 30 0.001 35.7 3.9 46 459-513 205-251 (290)
267 4g9p_A 4-hydroxy-3-methylbut-2 33.2 13 0.00045 40.0 1.3 15 380-394 254-268 (406)
268 1k81_A EIF-2-beta, probable tr 31.7 33 0.0011 24.0 2.7 22 417-438 2-26 (36)
269 1a76_A Flap endonuclease-1 pro 31.4 26 0.00088 36.5 3.2 23 527-550 229-251 (326)
270 2kdx_A HYPA, hydrogenase/ureas 31.0 16 0.00054 32.4 1.2 14 414-427 88-102 (119)
271 1ci4_A Protein (barrier-TO-aut 30.9 34 0.0012 29.0 3.2 31 450-480 6-41 (89)
272 3hn7_A UDP-N-acetylmuramate-L- 30.7 76 0.0026 35.1 7.1 51 627-677 58-116 (524)
273 2akl_A PHNA-like protein PA012 30.7 24 0.00083 32.0 2.4 23 414-438 27-49 (138)
274 2y9u_A Tumor protein 63; apopt 30.1 61 0.0021 26.0 4.4 45 469-515 19-63 (69)
275 3bzc_A TEX; helix-turn-helix, 29.3 30 0.001 40.6 3.5 46 527-575 512-558 (785)
276 1twf_I B12.6, DNA-directed RNA 29.2 26 0.0009 31.3 2.4 29 415-447 4-36 (122)
277 2kij_A Copper-transporting ATP 28.9 21 0.00072 31.9 1.7 21 375-396 38-58 (124)
278 3vdp_A Recombination protein R 28.7 52 0.0018 32.3 4.6 30 603-632 110-147 (212)
279 3k1f_M Transcription initiatio 28.6 28 0.00095 33.3 2.5 25 414-438 20-47 (197)
280 3a43_A HYPD, hydrogenase nicke 28.4 20 0.00069 32.8 1.5 12 415-426 107-118 (139)
281 2p6r_A Afuhel308 helicase; pro 28.1 37 0.0013 38.9 4.0 51 523-576 632-683 (702)
282 2qkq_A Ephrin type-B receptor 27.5 60 0.0021 26.6 4.2 47 468-516 29-76 (83)
283 2k50_A Replication factor A re 27.4 88 0.003 26.9 5.5 46 342-389 36-81 (115)
284 2k5c_A Uncharacterized protein 27.4 12 0.00041 31.2 -0.2 13 416-428 9-21 (95)
285 2jrp_A Putative cytoplasmic pr 27.1 26 0.00087 29.3 1.7 23 416-438 32-56 (81)
286 1giy_D 50S ribosomal protein L 27.1 78 0.0027 30.2 5.4 102 321-450 5-107 (178)
287 2q0z_X Protein Pro2281; SEC63, 27.0 58 0.002 33.9 5.0 77 497-576 136-215 (339)
288 2gmg_A Hypothetical protein PF 26.9 26 0.00089 30.7 1.8 14 413-426 82-95 (105)
289 3t7k_A RTT107, regulator of TY 26.3 1.4E+02 0.0049 30.0 7.4 75 608-683 21-102 (256)
290 3lda_A DNA repair protein RAD5 26.3 74 0.0025 34.1 5.7 47 529-575 89-136 (400)
291 3u50_C Telomerase-associated p 26.3 30 0.001 32.9 2.3 53 372-438 12-64 (172)
292 2cqa_A RUVB-like 2; TIP48, TIP 26.2 2.7E+02 0.0091 23.8 7.9 78 323-400 7-84 (95)
293 3bq7_A Diacylglycerol kinase d 24.7 92 0.0032 25.3 4.8 49 464-516 23-72 (81)
294 3qt1_I DNA-directed RNA polyme 24.7 20 0.00067 32.8 0.7 29 414-446 23-55 (133)
295 2k4p_A Phosphatidylinositol-3, 24.6 1E+02 0.0034 25.7 5.0 46 468-515 40-86 (86)
296 2f3n_A SH3 and multiple ankyri 24.5 79 0.0027 25.4 4.3 49 464-516 18-67 (76)
297 2yg9_A DNA-3-methyladenine gly 24.2 70 0.0024 31.4 4.7 18 491-508 146-163 (225)
298 2h56_A DNA-3-methyladenine gly 24.0 92 0.0031 30.7 5.6 19 491-509 138-156 (233)
299 1b4f_A EPHB2; SAM domain, EPH 23.5 87 0.003 25.5 4.4 46 468-515 25-71 (82)
300 1yuz_A Nigerythrin; rubrythrin 23.4 27 0.00092 34.0 1.4 11 414-424 185-195 (202)
301 6rxn_A Rubredoxin; electron tr 23.4 31 0.0011 25.6 1.4 14 411-424 23-39 (46)
302 1mpg_A ALKA, 3-methyladenine D 23.3 55 0.0019 33.2 3.9 21 554-574 206-226 (282)
303 3kka_C Ephrin type-A receptor 23.3 1.3E+02 0.0045 25.0 5.5 48 467-516 34-82 (86)
304 1vdd_A Recombination protein R 23.0 77 0.0026 31.4 4.6 21 555-575 12-32 (228)
305 3cng_A Nudix hydrolase; struct 22.5 47 0.0016 31.1 3.0 23 416-438 4-30 (189)
306 2raq_A Conserved protein MTH88 22.4 1.1E+02 0.0038 26.3 4.8 41 606-653 47-87 (97)
307 2y9t_A Tumor protein 63; apopt 22.3 74 0.0025 26.5 3.7 45 469-515 21-65 (82)
308 1ucv_A Ephrin type-A receptor 22.0 82 0.0028 25.7 4.0 45 469-515 22-67 (81)
309 3ngx_A Bifunctional protein fo 22.0 69 0.0024 32.7 4.2 56 622-683 13-81 (276)
310 1yfb_A Transition state regula 21.8 53 0.0018 25.5 2.6 22 372-393 29-50 (59)
311 3w0f_A Endonuclease 8-like 3; 21.8 44 0.0015 34.4 2.7 22 417-438 253-278 (287)
312 1yfu_A 3-hydroxyanthranilate-3 21.7 48 0.0017 31.6 2.8 67 378-456 80-155 (174)
313 2kp7_A Crossover junction endo 21.6 61 0.0021 27.2 3.1 24 490-513 57-80 (87)
314 3k7a_M Transcription initiatio 21.4 29 0.001 36.4 1.3 26 413-438 19-47 (345)
315 1wd2_A Ariadne-1 protein homol 21.4 21 0.00071 27.9 0.1 23 416-438 7-29 (60)
316 1v38_A SAM-domain protein sams 21.1 1.2E+02 0.0041 24.6 4.8 47 468-516 26-73 (78)
317 3j21_i 50S ribosomal protein L 21.0 46 0.0016 27.9 2.1 25 414-438 34-58 (83)
318 2l66_A SSO7C4, transcriptional 20.8 87 0.003 23.4 3.6 22 372-393 19-40 (53)
319 2jne_A Hypothetical protein YF 20.8 57 0.002 28.1 2.7 23 414-438 31-53 (101)
320 1zfo_A LAsp-1; LIM domain, zin 20.6 38 0.0013 22.7 1.3 13 414-426 2-14 (31)
321 3fhf_A Mjogg, N-glycosylase/DN 20.6 85 0.0029 30.7 4.4 60 484-543 72-145 (214)
322 2dl0_A SAM and SH3 domain-cont 20.6 75 0.0026 27.1 3.5 48 468-517 37-85 (97)
323 3h8m_A Ephrin type-A receptor 20.6 1.4E+02 0.0048 25.0 5.2 47 467-515 38-85 (90)
324 4ecq_A DNA polymerase ETA; tra 20.5 65 0.0022 34.9 3.9 70 498-569 218-299 (435)
325 2dkz_A Hypothetical protein LO 20.5 1.7E+02 0.0059 24.4 5.5 53 459-513 26-78 (84)
326 3hil_A Ephrin type-A receptor 20.2 1.3E+02 0.0046 24.7 4.9 45 467-513 36-81 (82)
327 2hu9_A MERP, mercuric transpor 20.2 58 0.002 29.5 2.8 33 416-456 2-50 (130)
328 2jhn_A ALKA, 3-methyladenine D 20.2 74 0.0025 32.5 4.1 28 481-508 196-227 (295)
329 2kso_A Ephrin type-A receptor 20.1 77 0.0026 26.1 3.4 46 468-515 30-76 (82)
330 1a76_A Flap endonuclease-1 pro 20.1 77 0.0026 32.8 4.2 23 461-486 229-251 (326)
331 3maj_A DNA processing chain A; 20.0 2.5E+02 0.0087 29.9 8.3 33 521-553 24-56 (382)
No 1
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=100.00 E-value=8.6e-194 Score=1646.29 Aligned_cols=665 Identities=41% Similarity=0.691 Sum_probs=560.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCccccCcccCCCCcceeccccccCC
Q psy11422 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMSL 92 (687)
Q Consensus 13 ~~~~~i~~L~~~l~~~~~~YY~~~~p~isD~~YD~L~~~L~~le~~~p~~~~~~spt~~Vg~~~~~~~~kv~H~~pMlSL 92 (687)
++++||++|+++|++||++||++|+|+|||++||+|+++|++||++||++.++|||||+||+.+.++|.||+|++|||||
T Consensus 3 ~~~~~~~~L~~~l~~~~~~YY~~d~p~isD~eYD~L~~eL~~lE~~~P~l~~~dSPtqrVG~~~~~~f~kv~H~~pMlSL 82 (671)
T 2owo_A 3 SIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAPLAAFSQIRHEVPMLSL 82 (671)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCSSBCCTHHHHHHHHHHHHHHHCTTSCCTTSGGGCCSCCCCBCCCEEECSSCCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCccccCCCCcccccCcccccCCCceECCCcCcCc
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhccCCCeeEEEEEccceeEEEEEEeCCEEEEEEecCCCCccchhhhhhhhhccCCcccccC
Q psy11422 93 DNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIK 172 (687)
Q Consensus 93 ~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~l~~~ 172 (687)
+|+||.+||.+|++|+.+.++...++.|+|||||||+||+|+|+||+|++|+|||||.+|||||+|+++|++||++|.+.
T Consensus 83 ~n~~~~~el~~f~~rv~~~l~~~~~~~~~~e~KiDGlaisL~Ye~G~Lv~a~TRGDG~~GEdvT~n~rtI~~IP~~l~~~ 162 (671)
T 2owo_A 83 DNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGE 162 (671)
T ss_dssp EEECSHHHHHHHHHHHHHHSSSCCCCCEEEEEEESSEEEEEEEETTEEEEEECCTTSSEEEBCHHHHHTCTTSCSBCCSS
T ss_pred cccCCHHHHHHHHHHHHHhcCCCcCceEEEEEecceEEEEEEEeCCEEEEEEecCCCcchhhHHHHHhhhcCCCccccCC
Confidence 99999999999999999887521236899999999999999999999999999999999999999999999999999752
Q ss_pred CCCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEecccccC-CCCCCCHHH
Q psy11422 173 YPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG-MNMPSSHSE 251 (687)
Q Consensus 173 ~~~~~~evRGEi~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~~~~~~-~~~~~~~~e 251 (687)
+.|..+|||||+||++++|+++|++|.+.|+++|+||||+|||+|||+||++++.|+|+||+|+|+..++ .. +.+|++
T Consensus 163 ~~p~~levRGEv~m~~~~F~~lN~~~~~~g~~~faNpRNaaAGsLrqld~~~~a~R~L~~~~y~~~~~~~~~~-~~t~~e 241 (671)
T 2owo_A 163 NIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL-PDTHLG 241 (671)
T ss_dssp SCCSEEEEEEEEECCHHHHHHHHHHHHHSSCCCCSCHHHHHHHHHTCSCHHHHHTSCCEEEEEEEEEEESSCC-CSBHHH
T ss_pred CCCCeEEEEEEEEEEHHHHHHHHHHHHhcCCCcccChHHHHHHHHHhcChhhHhcCCCEEEEEECcccCCCCC-CCCHHH
Confidence 2588999999999999999999999999999999999999999999999999999999999999964232 22 489999
Q ss_pred HHHHHHhcCCCCCCCceEeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCCceee
Q psy11422 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEAL 331 (687)
Q Consensus 252 ~l~~L~~~Gf~~~~~~~~~~~~~ei~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~~~~ 331 (687)
.|++|++|||+++++.+.|.+.+++++|+++|.+.|..|||+|||+||||||+.+|+.||+|+|+||||||||||+++++
T Consensus 242 ~l~~L~~~Gf~v~~~~~~~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~~~~~q~~LG~t~k~PrWAiA~Kfpae~~~ 321 (671)
T 2owo_A 242 RLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQEQM 321 (671)
T ss_dssp HHHHHHHHTCCCCTTCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEECCCCEEE
T ss_pred HHHHHHHCCCCCCCcceeeCCHHHHHHHHHHHHHHHhcCCCCCccEEEEecCHHHHHHhCcccCCCCceEEEcCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeecCcceeeeEEEEEEEEECCEEEEEecCCCHHHHHhcCCCCCCEEEEEecCCccceeeccccCCCCCCCcc
Q psy11422 332 TKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKI 411 (687)
Q Consensus 332 T~v~~I~~qvGRTG~iTPvA~lePV~l~G~tVsraTLhN~~~i~~~~i~iGd~V~v~raGdVIP~I~~vv~~~r~~~~~~ 411 (687)
|+|++|+|||||||+|||||+|+||.|+|+|||||||||+++|+++||+|||+|.|+|||||||+|++|+.+.|++++.+
T Consensus 322 T~l~~I~~qVGRTG~iTPvA~lePV~l~G~tVsrATLHN~d~i~~~di~iGD~V~V~rAGdvIP~i~~vv~~~r~~~~~~ 401 (671)
T 2owo_A 322 TFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTRE 401 (671)
T ss_dssp EEEEEEEEEECTTSBEEEEEEEEEEEETTEEEEEEECCSHHHHHHHTCCBTCEEEEEEETTTEEEEEEECGGGCCSSCBC
T ss_pred EEEEEEEEecCCCceeeeEEEEEeEEECCEEEEeccCCCHHHHHHcCCCCCCEEEEEECCCcccceeccccccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred ccCCCCCCCCCCcceeecCceeEEecCCCCCCHHHHHhhhhhcccccccccCCCCHHHHHHHHHCCCCCChHHHhcCChh
Q psy11422 412 FKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491 (687)
Q Consensus 412 ~~~P~~CP~C~~~l~~~~~~~~~~C~n~~~~C~~q~~~~i~~F~sr~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~ 491 (687)
|.+|++||+||++|++.+|++.+||+|... ||+|++++|.||+||++|||+|||+|+|++|+++|+|++++|||.|+.+
T Consensus 402 ~~~P~~CP~Cgs~l~~~~~~~~~rC~n~~~-Cpaq~~~~l~hf~sr~aldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~ 480 (671)
T 2owo_A 402 VVFPTHCPVCGSDVERVEGEAVARCTGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG 480 (671)
T ss_dssp CCCCSBCTTTCCBEEECTTCSCEEECCGGG-CHHHHHHHHHHHHSTTTTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHH
T ss_pred CcCCCCCCCCCCEeEEecCCEEEECCCCCC-CHHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHH
Confidence 999999999999999988899999998656 9999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCccHHHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHHHHHHHHhhcCChHHHHhcCHHHHhcCCCCCHHHHHHH
Q psy11422 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAF 571 (687)
Q Consensus 492 ~L~~l~gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~~Ak~La~~f~sld~l~~As~eeL~~I~GIG~~~A~sI 571 (687)
+|..++|||+|+++||+++|+.+|+.+|+|||+||||||||+++|+.|+++|+++++|..|+.++|.+++|||+++|++|
T Consensus 481 ~L~~l~gfG~Ksa~nLl~aIe~sk~~~l~R~L~algi~~VG~~~Ak~La~~Fgsl~~l~~As~eeL~~i~GIG~~~A~sI 560 (671)
T 2owo_A 481 KLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHV 560 (671)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHCSHHHHHTCCHHHHTTSTTCCHHHHHHH
T ss_pred HhhcccccchhHHHHHHHHHHHHhcCChhheehhhcccCccHHHHHHHHHHcCCHHHHHhCCHHHHhhcCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcchhHHHHHHHHHhcCcccccCCC--CCCCCCccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccccEEE
Q psy11422 572 IKFINQPLHRLLISQLRDVGIYWLNNPN--TKGNKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLV 649 (687)
Q Consensus 572 ~~ff~~~~n~~~i~~L~~~Gv~~~~~~~--~~~~~~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV 649 (687)
++||++++|+++|++|.+.|+++..... ....+++|+|++|||||+|+.|+|++++++|+++||+|++|||++|||||
T Consensus 561 ~~ff~~~~~~~~i~~L~~~gv~~~~~~~~~~~~~~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV 640 (671)
T 2owo_A 561 HNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVI 640 (671)
T ss_dssp HHHHTCHHHHHHHHHHHHHTCBCCCC------------------------------------------------------
T ss_pred HHHHHhHHHHHHHHHHHHcCCcccccccccccccCCcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCcccCceeEEE
Confidence 9999999999999999999998753211 11235689999999999999999999999999999999999999999999
Q ss_pred EcCCCCccHHHHHHcCCeEEeHHHHHHHHh
Q psy11422 650 KGQKPGKKLEKAIKLNIKILDEKNFVKIVK 679 (687)
Q Consensus 650 ~G~~~g~Kl~kA~~lgI~Ii~E~~f~~~l~ 679 (687)
+|+++|+|++||++|||+||+|++|++||+
T Consensus 641 ~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 641 AGEAAGSKLAKAQELGIEVIDEAEMLRLLG 670 (671)
T ss_dssp ------------------------------
T ss_pred ECCCCChHHHHHHHCCCcEEcHHHHHHHhc
Confidence 999999999999999999999999999984
No 2
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=100.00 E-value=6.9e-188 Score=1596.68 Aligned_cols=654 Identities=39% Similarity=0.657 Sum_probs=551.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCccccCcccCCC-Ccceecccccc
Q psy11422 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGEN-SKYVHHTFKMM 90 (687)
Q Consensus 12 ~~~~~~i~~L~~~l~~~~~~YY~~~~p~isD~~YD~L~~~L~~le~~~p~~~~~~spt~~Vg~~~~~~-~~kv~H~~pMl 90 (687)
+++++||++|+++|++||++||++|+|+|||++||+|+++|++||++||++.++|||||+||+.+.++ |.||+|++|||
T Consensus 4 ~~~~~~~~~L~~~l~~~~~~YY~~d~p~isD~eYD~l~~eL~~lE~~~P~l~~~dSpt~rVG~~~~~~~f~~v~H~~pMl 83 (667)
T 1dgs_A 4 EEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFKSPDSPTEQVGARPLEPTFRPVRHPTRMY 83 (667)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCSCSSSSHHHHHHHHHHTTSSGGGCCTTSGGGGCSSSCCCCCCCEEECSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCccccCCCCCccccCCccccCCccceECCCcCc
Confidence 45568999999999999999999999999999999999999999999999999999999999999888 99999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhhccCCCeeEEEEEccceeEEEEEEeCCEEEEEEecCCCCccchhhhhhhhhccCCcccc
Q psy11422 91 SLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLN 170 (687)
Q Consensus 91 SL~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~l~ 170 (687)
||+|+||.+||.+|++|+.+.++ .++.|+|||||||+|| |+|+||+ +|+|||||.+|||||+|+++|++||++|.
T Consensus 84 SL~n~~~~~el~~f~~rv~~~~~--~~~~~~~e~KiDGlai-L~Ye~G~--~a~TRGDG~~GedvT~n~rtI~~iP~~l~ 158 (667)
T 1dgs_A 84 SLDNAFTYEEVLAFEERLEREAE--APSLYTVEHKVDGLSV-LYYEEGV--WSTGSGDGEVGEEVTQNLLTIPTIPRRLK 158 (667)
T ss_dssp CCCEECSHHHHHHHHHHTTSSSC--SCCEEEEEECCSCEEE-EEEETTE--EEEEECSSSEEEBCTGGGTSSTTSCSBCS
T ss_pred CccccCCHHHHHHHHHHHHHhcC--CCceEEEEEccceeEE-EEEcCCC--EEEeeCCCcchhhHHHHHhhhcCCCcccC
Confidence 99999999999999999988775 2478999999999999 9999999 99999999999999999999999999997
Q ss_pred cCCCCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCccccccccc--EEEEEeccc-ccCCCCCC
Q psy11422 171 IKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKIL--HFFAHGVGE-LRGMNMPS 247 (687)
Q Consensus 171 ~~~~~~~~evRGEi~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l--~f~~y~~~~-~~~~~~~~ 247 (687)
+. |..+|||||+||++++|+++|++|.+.|+++|+||||+|||+|||+||++++.|+| +||+|+|.. .++.. +.
T Consensus 159 ~~--p~~levRGEv~m~~~~F~~lN~~~~~~g~~~faNpRNaaAGsLrqld~~~~a~r~L~~~~~~y~~~~~~~~~~-~~ 235 (667)
T 1dgs_A 159 GV--PDRLEVRGEVYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLGLEESG-LK 235 (667)
T ss_dssp SC--CSEEEEEEEEECCHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHSCSSHHHHHHSCCEEECCCBCTTTTTTSCC-CC
T ss_pred CC--CCeEEEEEEEEEEHHHHHHHHHHHHhcCCCcccChHHHHHHHHHhcChhhhhhCCCCCEEEEEEeeccCCCCC-CC
Confidence 52 88999999999999999999999999999999999999999999999999999999 999999931 12222 48
Q ss_pred CHHHHHHHHHhcCCCCCCCceEeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCC
Q psy11422 248 SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLS 327 (687)
Q Consensus 248 ~~~e~l~~L~~~Gf~~~~~~~~~~~~~ei~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~ 327 (687)
+|++.|++|++|||+|+++.+.|.+.+++++|+++|.+.|..|||+|||+||||||+.+|+.||+|+|+||||||||||+
T Consensus 236 t~~e~l~~L~~~Gf~v~~~~~~~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~~~~~q~~LG~t~k~PrWAiA~Kfpa 315 (667)
T 1dgs_A 236 SQYELLLWLKEKGFPVEHCYEKALGAEGVEEVYRRGLAQRHALPFEADGVVLKLDDLTLWGELGYTARAPRFALAYKFPA 315 (667)
T ss_dssp BHHHHHHHHHHTTCCCCSCEEEEEHHHHHHHHHHHHHHTTTTSSSCCCEEEEEESBTHHHHHSCBCSSCBSSEEEEECCC
T ss_pred CHHHHHHHHHHCCCCCCccceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEecCHHHHHHhCcccCCCCceEEecCCC
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEEEEEEeecCcceeeeEEEEEEEEECCEEEEEecCCCHHHHHhcCCCCCCEEEEEecCCccceeeccccCCCCC
Q psy11422 328 KEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPN 407 (687)
Q Consensus 328 ~~~~T~v~~I~~qvGRTG~iTPvA~lePV~l~G~tVsraTLhN~~~i~~~~i~iGd~V~v~raGdVIP~I~~vv~~~r~~ 407 (687)
++++|+|++|+|||||||+|||||+|+||.|+|+|||||||||+++|+++||++||+|.|+|||||||+|++|+.+.|++
T Consensus 316 e~~~T~l~~I~~qVGRTG~iTPvA~lePV~l~G~tVsrAtLhN~d~i~~~di~iGD~V~V~rAGdvIP~i~~vv~~~R~~ 395 (667)
T 1dgs_A 316 EEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGSEVSRVTLHNESYIEELDIRIGDWVLVHKAGGVIPEVLRVLKERRTG 395 (667)
T ss_dssp CCEEEEEEEEEEEECTTSBEEEEEEEEEEEETTEEEEEEECCSHHHHHHTTCBSSCEEEEEEETTTEEEEEEECGGGCCS
T ss_pred ceEEEEEEEEEEecCCCceeeeEEEEEeEEECCEEEEEcccCCHHHHHHcCCCCCCEEEEEECCCcchhhhccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCcceeecCceeEEecCCCCCCHHHHHhhhhhcccccccccCCCCHHHHHHHHHCCCCCChHHHhc
Q psy11422 408 DSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYK 487 (687)
Q Consensus 408 ~~~~~~~P~~CP~C~~~l~~~~~~~~~~C~n~~~~C~~q~~~~i~~F~sr~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~ 487 (687)
++.+|.+|++||+||+++ .+|++.+||+|. . ||+|++++|.||+||++|||+|||+|+|++|+++|+|++++|||.
T Consensus 396 ~~~~~~~P~~CP~Cgs~l--~~g~~~~~C~n~-~-Cpaq~~~~l~hf~sr~aldI~GLG~k~i~~L~~~g~I~~~~DL~~ 471 (667)
T 1dgs_A 396 KERPIRWPEACPECGHRL--VKEGKVHRCPNP-L-CPAKRFEAIRHYASRKAMDIEGLGEKLIERLLEKGLVRDVADLYH 471 (667)
T ss_dssp CCCBCCCCSBCTTTCCBC--EEETTEEECCCT-T-CGGGHHHHHHHHHSTTSSCCTTCCHHHHHHHHHTTSCSSGGGGGG
T ss_pred cCCcccCCCCCCCCCCCc--cCCCeEEEeCCC-C-ChhHHHHHHHHHhcccccCcCcCCHHHHHHHHHcCCCCCHHHHHh
Confidence 889999999999999999 567799999996 6 999999999999999999999999999999999999999999999
Q ss_pred CChhhhhcccCccHHHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHHHHHHHHhhcCChHHHHhcCHHHHhcCCCCCHHH
Q psy11422 488 INFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTT 567 (687)
Q Consensus 488 L~~~~L~~l~gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~~Ak~La~~f~sld~l~~As~eeL~~I~GIG~~~ 567 (687)
|+.++|..++|||+|+++||+++|+++|+.+|+|||+||||||||+++|+.|+++|+++++|..|+.++|.+++|||+++
T Consensus 472 L~~e~L~~l~g~G~Ksa~nLl~aIe~sk~~~l~R~L~alGI~~VG~~~Ak~La~~Fgsl~~l~~As~eeL~~I~GIG~~~ 551 (667)
T 1dgs_A 472 LRKEDLLGLERMGEKSAQNLLRQIEESKHRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELIEVEEVGELT 551 (667)
T ss_dssp GCCHHHHTTSSCCSTTHHHHHHHHHHGGGCCHHHHHHHTTCSSCCHHHHHHHHHTTSBHHHHTTCCHHHHHTSTTCCHHH
T ss_pred cCHHHHhcccccchhhHHHHHHHHHHHhcCcHHHhhHhhccCCccHHHHHHHHHHcCCHHHHHhCCHHHHHhccCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcchhHHHHHHHHHhcCcccccCCCCCCCCCccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccccE
Q psy11422 568 VKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGNKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNY 647 (687)
Q Consensus 568 A~sI~~ff~~~~n~~~i~~L~~~Gv~~~~~~~~~~~~~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~ 647 (687)
|++|.+||+++.|+++|++|.+.|+++... .. .+++|+|++|||||+|+. +|++++++|+++||+|++|||++|||
T Consensus 552 A~sI~~ff~~~~~~~~i~~L~~~gv~~~~~--~~-~~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Ggkv~~sVSkkTd~ 627 (667)
T 1dgs_A 552 ARAILETLKDPAFRDLVRRLKEAGVSMESK--EE-VSDLLSGLTFVLTGELSR-PREEVKALLGRLGAKVTDSVSRKTSY 627 (667)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTTCCCBCC--------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCCccccc--cc-cccccCCCEEEEeCCCCC-CHHHHHHHHHHcCCEEcCcccCCeeE
Confidence 999999999999999999999999987531 11 356899999999999987 99999999999999999999999999
Q ss_pred EEEcCCCCccHHHHHHcCCeEEeHHHHHHHHhcc
Q psy11422 648 LVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGF 681 (687)
Q Consensus 648 LV~G~~~g~Kl~kA~~lgI~Ii~E~~f~~~l~~~ 681 (687)
||+|+++|+|++||++|||+||+|++|++||+..
T Consensus 628 lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~~~ 661 (667)
T 1dgs_A 628 LVVGENPGSKLEKARALGVAVLTEEEFWRFLKEK 661 (667)
T ss_dssp ----------------------------------
T ss_pred EEECCCCChHHHHHHHCCCeEEeHHHHHHHHhcC
Confidence 9999999999999999999999999999999753
No 3
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=100.00 E-value=4.4e-175 Score=1474.53 Aligned_cols=585 Identities=43% Similarity=0.722 Sum_probs=561.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCccccCcccCCCCcceecccccc
Q psy11422 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMM 90 (687)
Q Consensus 11 ~~~~~~~i~~L~~~l~~~~~~YY~~~~p~isD~~YD~L~~~L~~le~~~p~~~~~~spt~~Vg~~~~~~~~kv~H~~pMl 90 (687)
|+++++||++|+++|++||++||++|+|+|||++||+|+++|++||++||++.+++||||+||+.+.++|.||+|++|||
T Consensus 1 me~~~~~i~~L~~~i~~~~~~Yy~~~~p~IsD~eYD~L~~eL~~lE~~~p~l~~~dSPtqrVG~~~~~~f~kv~H~~pMl 80 (586)
T 4glx_A 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAPLAAFSQIRHEVPML 80 (586)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHTTCSSBCCTHHHHHHHHHHHHHHHSGGGCCTTSGGGC----CCBCCCEEECSSCCC
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCccccCCCCCcccccccccCCCCcccCCCCCC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhhccCCCeeEEEEEccceeEEEEEEeCCEEEEEEecCCCCccchhhhhhhhhccCCcccc
Q psy11422 91 SLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLN 170 (687)
Q Consensus 91 SL~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~l~ 170 (687)
||+|+||.+||.+|++|+.+.|+..++..|+|||||||+|++|+|+||+|++|+|||||.+|||||+|+++|++||++|.
T Consensus 81 SL~n~~~~~el~~~~~r~~~~l~~~~~~~~~~epKiDGlavsL~Ye~G~Lv~a~TRGDG~~GeDiT~nvrtI~~IPl~l~ 160 (586)
T 4glx_A 81 SLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLH 160 (586)
T ss_dssp CCCEECSHHHHHHHHHHHHHC-------CEEEEEEESSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTTSCSBCC
T ss_pred CccccCCHHHHHHHHHHHHHHhccCCCceEEEEEeecceEEEEEEeCCEEEEEEccCCCcccccHHHHHHhccCcccccc
Confidence 99999999999999999999887555678999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEecccccCCCCCCCHH
Q psy11422 171 IKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250 (687)
Q Consensus 171 ~~~~~~~~evRGEi~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~~~~~~~~~~~~~~ 250 (687)
+.++|..+|||||+||++++|+++|+++.+.|+++|+||||+|||+|||+||++++.|+|+||+|++...++..++.+|+
T Consensus 161 ~~~~p~~leVRGEv~m~~~~F~~ln~~~~~~g~~~faNpRNaaAGslrqld~~~~a~r~L~f~~y~v~~~~~~~~~~t~~ 240 (586)
T 4glx_A 161 GENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL 240 (586)
T ss_dssp SSSCCSEEEEEEEEECCHHHHHHHHHHHHHTTCCCCSCHHHHHHHHHTCSCHHHHHTSCCEEEEEEEEEEESSCCCSBHH
T ss_pred cCCCCceEEEEEEEEEEhhhccccchhhhhccCccchhhHHHHhccccccchhhhhccccceeEeeeeeeecccccccHH
Confidence 76789999999999999999999999999999999999999999999999999999999999999998766656678999
Q ss_pred HHHHHHHhcCCCCCCCceEeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCCcee
Q psy11422 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEA 330 (687)
Q Consensus 251 e~l~~L~~~Gf~~~~~~~~~~~~~ei~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~~~ 330 (687)
+.|++|++|||+++++...+.+.+++.+|+++|...|..+||+|||||||+|++.+|+.||+|+|+||||||||||++++
T Consensus 241 e~l~~L~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~R~~l~y~iDGiVikvn~~~~~~~lG~ts~~PrwAiA~Kfp~e~~ 320 (586)
T 4glx_A 241 GRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQEQ 320 (586)
T ss_dssp HHHHHHHHTTCCCCTTCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEECCCCCEE
T ss_pred HHHHHHHHcCCCCccceeeeccHHHHHHHHHHHHHhhhcccccCCceEEEecchhhhhccCCccCCCCeeEEEcccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEeecCcceeeeEEEEEEEEECCEEEEEecCCCHHHHHhcCCCCCCEEEEEecCCccceeeccccCCCCCCCc
Q psy11422 331 LTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSK 410 (687)
Q Consensus 331 ~T~v~~I~~qvGRTG~iTPvA~lePV~l~G~tVsraTLhN~~~i~~~~i~iGd~V~v~raGdVIP~I~~vv~~~r~~~~~ 410 (687)
+|+|++|+|||||||+|||||+|+||.|+|+||+||||||+++|+++||++||+|.|+|||||||+|++|+++.|++++.
T Consensus 321 ~T~v~~I~~qVGRTG~iTPvA~lePV~l~G~tVsraTLhN~~~I~~~di~iGD~V~V~rAGdVIP~I~~Vv~~~r~~~~~ 400 (586)
T 4glx_A 321 MTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR 400 (586)
T ss_dssp EEEEEEEEEEECTTSBEEEEEEEEEEEETTEEEEEEECCCHHHHHHHTCEETCEEEEEEETTTEEEEEEECGGGCCSSCE
T ss_pred eeEeEEEEEecCCceEEEEEEEEeeEEeCCEEEEecccCCHHHHHhcCCCcCCEEEEEECCCcCccceeeecccCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCcceeecCceeEEecCCCCCCHHHHHhhhhhcccccccccCCCCHHHHHHHHHCCCCCChHHHhcCCh
Q psy11422 411 IFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490 (687)
Q Consensus 411 ~~~~P~~CP~C~~~l~~~~~~~~~~C~n~~~~C~~q~~~~i~~F~sr~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~ 490 (687)
+|.+|++||+||+++++.++++.+||+|+.. ||+|++++|.||+||+||||+|||+++|++|+++|+|++++|||+|+.
T Consensus 401 ~~~~P~~CP~Cgs~~~~~~~~~~~rC~n~~~-Cpaq~~~~l~hf~sr~amdI~GlG~~~i~~L~~~g~i~~~~Dly~L~~ 479 (586)
T 4glx_A 401 EVVFPTHCPVCGSDVERVEGEAVARCTGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTA 479 (586)
T ss_dssp ECCCCSBCTTTCCBEECCTTCSCCEESCGGG-CHHHHHHHHHHHHSTTTTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCH
T ss_pred CCcCCCcCCCCCCchhhhhcccccEeCCCcC-cHHHHHhHHHhhhccccccCCCcCHHHHHHHHhcCCCCCHHHHhCCCH
Confidence 9999999999999999999999999999766 999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCccHHHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHHHHHHHHhhcCChHHHHhcCHHHHhcCCCCCHHHHHH
Q psy11422 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKA 570 (687)
Q Consensus 491 ~~L~~l~gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~~Ak~La~~f~sld~l~~As~eeL~~I~GIG~~~A~s 570 (687)
++|++++|||+|+|+||+++|++||+.+|+|||+|||||+||+.+|+.|+++|+++++|.+|+.++|.+|+|||+++|++
T Consensus 480 ~~L~~l~g~geKsa~nL~~aIe~sk~~~l~r~l~aLGI~~vG~~~a~~La~~f~sl~~l~~a~~e~l~~i~giG~~~A~s 559 (586)
T 4glx_A 480 GKLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASH 559 (586)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHH
T ss_pred HHHhcccCccHHHHHHHHHHHHHHcCCCHHHHHHHcCCCchhHHHHHHHHHHcCCHHHHHccCHHHHhcCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcchhHHHHHHHHHhcCccccc
Q psy11422 571 FIKFINQPLHRLLISQLRDVGIYWLN 596 (687)
Q Consensus 571 I~~ff~~~~n~~~i~~L~~~Gv~~~~ 596 (687)
|.+||++++|+++|++|.+.||+|+.
T Consensus 560 i~~ff~~~~n~~~i~~L~~~Gv~~~~ 585 (586)
T 4glx_A 560 VHNFFAEESNRNVISELLAEGVHWPA 585 (586)
T ss_dssp HHHHHHSHHHHHHHHHHHHTTCBCCC
T ss_pred HHHHHcCHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999864
No 4
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.4e-175 Score=1474.22 Aligned_cols=585 Identities=36% Similarity=0.575 Sum_probs=388.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCccccCccc-CCCCcceeccc
Q psy11422 9 INFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG-GENSKYVHHTF 87 (687)
Q Consensus 9 ~~~~~~~~~i~~L~~~l~~~~~~YY~~~~p~isD~~YD~L~~~L~~le~~~p~~~~~~spt~~Vg~~~-~~~~~kv~H~~ 87 (687)
....++++||++|+++|++||++||++|+|+|||++||+|+++|++||++||++.+++||||+||+.+ ..+|.||+|.+
T Consensus 8 ~~~~~~~~~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~lE~~~P~l~~~dSPtqrVGg~~~~~~f~kV~H~~ 87 (615)
T 3sgi_A 8 QTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPELRTPDSPTQLVGGAGFATDFEPVDHLE 87 (615)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHHSCCCSSCCSSCSSSSHHHHHHTSSGGGCCTTCTTSCCCCCCCSSSCCBCCCSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCcCcCCCCCCcccCCCcccccCCCceecCC
Confidence 34466788999999999999999999999999999999999999999999999999999999999999 79999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHHhhccCCCeeEEEEEccceeEEEEEEeCCEEEEEEecCCCCccchhhhhhhhhccCCc
Q psy11422 88 KMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPL 167 (687)
Q Consensus 88 pMlSL~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~ 167 (687)
|||||+|+||.+||.+|++|+.+.++. ++.|+|||||||+||+|+|+||+|++|+|||||.+|||||+|+++|++||+
T Consensus 88 pMlSL~n~f~~eel~~f~~rv~~~l~~--~~~~~~EpKiDGlavsL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~IP~ 165 (615)
T 3sgi_A 88 RMLSLDNAFTADELAAWAGRIHAEVGD--AAHYLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPE 165 (615)
T ss_dssp CCCCCEEECSSSCCSTTTTTSTTTTCS--CCCEEEEEEECSEEEEEEEETTEEEEEECCTTSSSCBCCHHHHHSCSSSCS
T ss_pred ccCCccccCCHHHHHHHHHHHHHhcCC--CCeEEEEEEecceEEEEEEECCEEEEEEecCCCcchhhHHHHHHhhcCcch
Confidence 999999999999999999999988762 468999999999999999999999999999999999999999999999999
Q ss_pred ccccCC---CCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEecccccCCC
Q psy11422 168 VLNIKY---PPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN 244 (687)
Q Consensus 168 ~l~~~~---~~~~~evRGEi~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~~~~~~~~ 244 (687)
+|.+.+ +|..+||||||||++++|+++|+++.+.|+++|+||||+|||+|||+||++++.|+|+||+|+|+..++..
T Consensus 166 ~L~~~~~~~~p~~levRGEv~m~~~~F~~lN~~~~~~g~~~faNpRNaAAGsLRqld~~ita~R~L~~f~y~~~~~~~~~ 245 (615)
T 3sgi_A 166 RLTPGDDYPVPEVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFR 245 (615)
T ss_dssp SCCCCSSCCCCSEEEEEEEEECCHHHHHHHHTTCSSSSSCCCSSHHHHHHHHHTCSSTTHHHHSCCEEEEEEEEEEESCC
T ss_pred hhcCCcccCCCCeEEEEEEEEEeHHHHHHHHHHHHHcCCCcCCChHHHHHHHHHcCChhhHhhCcceEEEEeccccCCCC
Confidence 998642 58899999999999999999999999999999999999999999999999999999999999998655443
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCceEeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeec
Q psy11422 245 MPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYK 324 (687)
Q Consensus 245 ~~~~~~e~l~~L~~~Gf~~~~~~~~~~~~~ei~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~K 324 (687)
+.+|++.|++|++|||+|+++.+.|.+++++.+|+++|.+.|..|||+|||||||||++.+|+.||+|+|+||||||||
T Consensus 246 -~~t~~e~l~~L~~~Gf~v~~~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~lG~t~k~PRWAiA~K 324 (615)
T 3sgi_A 246 -PATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAIAYK 324 (615)
T ss_dssp -CSBTTTHHHHHHHTTCCCCCCCCCBSSHHHHHHHHTTTTTSGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEE
T ss_pred -CcCHHHHHHHHHHCCCCCCCCeEeeCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCHHHHHHhCCCCCCCCceEEEc
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEEEEEEeecCcceeeeEEEEEEEEECCEEEEEecCCCHHHHHhcCCCCCCEEEEEecCCccceeeccccCC
Q psy11422 325 FLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSL 404 (687)
Q Consensus 325 f~~~~~~T~v~~I~~qvGRTG~iTPvA~lePV~l~G~tVsraTLhN~~~i~~~~i~iGd~V~v~raGdVIP~I~~vv~~~ 404 (687)
||+++++|+|++|+|||||||+|||||+|+||.|+|+|||||||||+++|+++||+|||+|.|+|||||||+|++|+.+.
T Consensus 325 fpaee~~T~l~~I~~qVGRTG~iTPvA~lePV~l~G~tVsrATLHN~d~i~~~di~iGD~V~V~rAGdVIP~V~~vv~~~ 404 (615)
T 3sgi_A 325 YPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNASEIKRKGVLIGDTVVIRKAGDVIPEVLGPVVEL 404 (615)
T ss_dssp CCCSEEEEECCEECCCBCSSSCBCCBEECCCEECSSSEECCCBCCSTTTTTTTCCCBTCEEEEECCSSSSCCCCEECTTC
T ss_pred CCCceeEEEEEEEEEecCCCceeeEEEEEEeEEECCEEEEEecCCCHHHHHHcCCCCCCEEEEEEcCCCccceeeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCCCCCCCCCccee-ecCceeEEecCCCCCCHHHHHhhhhhcccccccccCCCCHHHHHHHHHCCCCCChH
Q psy11422 405 RPNDSKIFKIPNICPICNSKIIY-IESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483 (687)
Q Consensus 405 r~~~~~~~~~P~~CP~C~~~l~~-~~~~~~~~C~n~~~~C~~q~~~~i~~F~sr~~l~I~GLG~k~i~~L~~~g~I~~i~ 483 (687)
|++++.+|.+|++||+||++|++ .++++.+||+|+.. ||+|++++|.||+||+||||+|||+++|++|++.|+|++++
T Consensus 405 R~~~~~~~~~P~~CP~Cgs~l~~~~~~~~~~rC~n~~~-CpaQ~~~~l~hf~Sr~amdI~GlG~~~i~~L~~~g~i~~~a 483 (615)
T 3sgi_A 405 RDGSEREFIMPTTCPECGSPLAPEKEGDADIRCPNARG-CPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAKVIADEG 483 (615)
T ss_dssp CCCCCBCCCCC---------------------------------------------------------------------
T ss_pred CCCCCccCCCCCCCCCCCCeeeecCCCCEEEEcCCCCC-CHHHHHHHHHHHhccCccCccccCHHHHHHHHHCCCcCCHH
Confidence 99988999999999999999998 67889999999656 99999999999999999999999999999999999999999
Q ss_pred HHhcCChhhhhcccCc------cHHHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHHHHHHHHhhcCChHHHHhcCHHHH
Q psy11422 484 DLYKINFKNLLRLDRV------SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557 (687)
Q Consensus 484 DL~~L~~~~L~~l~gf------G~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~~Ak~La~~f~sld~l~~As~eeL 557 (687)
|||+|+.++|+.++|| |+|+|+||+++|++||+.+|+|||+||||||||+++|+.|+++|+++++|..|+.++|
T Consensus 484 Dly~L~~~~L~~l~~~~~~~g~g~ksa~nLl~aIe~sk~~~l~r~L~aLGIp~VG~~~ak~La~~Fgsle~L~~As~eeL 563 (615)
T 3sgi_A 484 ELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAASTDQL 563 (615)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhCCHHHHhhccccccccCccchHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCHHHHHHHHHHcCCHHHHHhCCHHHH
Confidence 9999999999999977 5899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHcchhHHHHHHHHHhcCcccccC
Q psy11422 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNN 597 (687)
Q Consensus 558 ~~I~GIG~~~A~sI~~ff~~~~n~~~i~~L~~~Gv~~~~~ 597 (687)
.+++|||+++|++|++||++++|+++|++|.++||++...
T Consensus 564 ~~I~GIG~~~A~sI~~ff~~~~n~~~i~~L~~~Gv~~~~~ 603 (615)
T 3sgi_A 564 AAVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVDE 603 (615)
T ss_dssp ----------------------------------------
T ss_pred hhCCCCCHHHHHHHHHHHcCHHHHHHHHHHHHcCCCcccc
Confidence 9999999999999999999999999999999999988653
No 5
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=100.00 E-value=2.3e-103 Score=829.04 Aligned_cols=320 Identities=43% Similarity=0.696 Sum_probs=305.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCccccCcccCCCCcceeccccccCCC
Q psy11422 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMSLD 93 (687)
Q Consensus 14 ~~~~i~~L~~~l~~~~~~YY~~~~p~isD~~YD~L~~~L~~le~~~p~~~~~~spt~~Vg~~~~~~~~kv~H~~pMlSL~ 93 (687)
+++||++|+++|++||++||++|+|+|||++||+|+++|++||++||++.+++||||+||+.+..+|.||+|++|||||+
T Consensus 2 ~~~~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~lE~~~P~l~~~dSPtqrVG~~~~~~f~kv~H~~pMlSL~ 81 (322)
T 3uq8_A 2 IQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVGAKPLSGFSQIRHEIPMLSLD 81 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHHHHHHHHCGGGCCTTSGGGCSCSSCCSSCCEEECSSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCcCCCCCCCcccccCcccccCCCceecCCcccCcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhcc-CCCeeEEEEEccceeEEEEEEeCCEEEEEEecCCCCccchhhhhhhhhccCCcccccC
Q psy11422 94 NGFSDEDVIIFNKRITNELKL-TKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIK 172 (687)
Q Consensus 94 k~~~~~el~~~~~~~~~~l~~-~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~l~~~ 172 (687)
|+||.+||.+|++|+.+.|+. .+++.|+|||||||+||+|+|+||+|++|+|||||.+|||||+|+++|++||++|.+.
T Consensus 82 n~~~~eel~~f~~rv~~~l~~~~~~~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~IPl~L~~~ 161 (322)
T 3uq8_A 82 NAFSDAEFNAFVARIEDRLILLPAPLTFCCEPKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTD 161 (322)
T ss_dssp EECSHHHHHHHHHHHHHHCSSCCSSCEEEEEEEESSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHHTCTTSCSBCSCS
T ss_pred ccCCHHHHHHHHHHHHHhccCCCcCceEEEEEeeceEEEEEEEeCCEEEEEEecCCCccchhHHHHHHHhcCCCccccCC
Confidence 999999999999999998863 1347899999999999999999999999999999999999999999999999999864
Q ss_pred CCCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEecccccCCCCCCCHHHH
Q psy11422 173 YPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252 (687)
Q Consensus 173 ~~~~~~evRGEi~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~~~~~~~~~~~~~~e~ 252 (687)
++|..+||||||||++++|+++|++|.+.|+++|+||||+|||+|||+||++++.|+|+||+|+|+..++..++.+|++.
T Consensus 162 ~~p~~leVRGEv~m~~~~F~~lN~~~~~~g~~~faNPRNaAAGsLRqld~~ita~R~L~ff~y~~~~~~~~~~~~t~~e~ 241 (322)
T 3uq8_A 162 NPPARLEVRGEVFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDLPTTHYAR 241 (322)
T ss_dssp SCCSEEEEEEEEECCHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHTCSCHHHHTTSCCEEEEEEEEEEESCCCCSBHHHH
T ss_pred CCCceEEEEEEEEeeHHHHHHHHHHHHHhCCccccchhHHHHHHHhhcChhhhhcCccEEEEEeccccCCCCCCCCHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999765543345899999
Q ss_pred HHHHHhcCCCCCCCceEeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCCceeeE
Q psy11422 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALT 332 (687)
Q Consensus 253 l~~L~~~Gf~~~~~~~~~~~~~ei~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~~~~T 332 (687)
|++|++|||+|+++.+.|.+++++.+|+++|.+.|..|||+|||||||||++.+|+.||+|+|+||||||||||+++++|
T Consensus 242 l~~L~~~Gf~v~~~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRWAiA~Kfpaee~~T 321 (322)
T 3uq8_A 242 LQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIALQNELGFISKAPRWAIAYKFPAQEELT 321 (322)
T ss_dssp HHHHHHTTCCCCTTCEEEESHHHHHHHHHHHHHTTTTTSSCEEEEEEEESBHHHHHHHCEETTEETTEEEEECCCGGGCC
T ss_pred HHHHHHcCCCCCCCcEEeCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCHHHHHHcCccCCCCCceEEEcCCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred E
Q psy11422 333 K 333 (687)
Q Consensus 333 ~ 333 (687)
.
T Consensus 322 ~ 322 (322)
T 3uq8_A 322 L 322 (322)
T ss_dssp C
T ss_pred C
Confidence 3
No 6
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=100.00 E-value=9.2e-102 Score=814.60 Aligned_cols=312 Identities=41% Similarity=0.677 Sum_probs=297.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCccccCcccCCCCcceeccccccC
Q psy11422 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMS 91 (687)
Q Consensus 12 ~~~~~~i~~L~~~l~~~~~~YY~~~~p~isD~~YD~L~~~L~~le~~~p~~~~~~spt~~Vg~~~~~~~~kv~H~~pMlS 91 (687)
+++++||++|+++|++||++||++|+|+|||++||+|+++|++||++||++.+++||||+||+.+..+|.||+|++||||
T Consensus 2 ~~~~~~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~lE~~~p~l~~~dSPTqrVG~~~~~~f~kv~H~~pMlS 81 (318)
T 3jsl_A 2 ADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTVRVGGEAQASFNKVNHDTPMLS 81 (318)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHCGGGCCTTCGGGGGCCSCCCCCCEEECSSCCCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCcCCCCCCCCccccCccccccCceeecCCcCcC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhhccCCCeeEEEEEccceeEEEEEEeCCEEEEEEecCCCCccchhhhhhhhhccCCccccc
Q psy11422 92 LDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI 171 (687)
Q Consensus 92 L~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~l~~ 171 (687)
|+|+||.+||.+|++|+.+.|+ ++.|+|||||||+||+|+|+||+|++|+|||||.+|||||+|+++|++||++|++
T Consensus 82 L~n~f~~eel~~f~~r~~~~l~---~~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~IP~~L~~ 158 (318)
T 3jsl_A 82 LGNAFNEDDLRKFDQRIREQIG---NVEYMCELKIDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKE 158 (318)
T ss_dssp CEEECSHHHHHHHHHHHHHHTC---SCCEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTTSCSBCSS
T ss_pred ccccCCHHHHHHHHHHHHhhcC---CceEEEEEeecceEEEEEEECCEEEEEEeCCCCccchhHHHHHHHhcCCccccCC
Confidence 9999999999999999998886 4789999999999999999999999999999999999999999999999999974
Q ss_pred CCCCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEecccccCCCCCCCHHH
Q psy11422 172 KYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251 (687)
Q Consensus 172 ~~~~~~~evRGEi~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~~~~~~~~~~~~~~e 251 (687)
|..+||||||||++++|+++|+++.+.|+++|+||||+|||+|||+||++++.|+|+||+|+|+.+++.. +.+|++
T Consensus 159 ---~~~levRGEv~m~~~~F~~lN~~~~~~g~~~faNPRNaAAGsLRqld~~ita~R~L~ff~y~~~~~~~~~-~~t~~e 234 (318)
T 3jsl_A 159 ---PLNVEVRGEAYMPRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFN-ARSQSE 234 (318)
T ss_dssp ---CCCEEEEEEEECCHHHHHHHHHHHBTTBCCCCSSHHHHHHHHHSCSCHHHHHHSCCEEEEEEESCCTTCC-CSBHHH
T ss_pred ---CCcEEEEEEEEEcHHHHHHHHHHHHHhCCccccChHHHHHHHHHccChhhhhhCcceEEEEecccccCCC-CCCHHH
Confidence 5679999999999999999999999999999999999999999999999999999999999998766544 489999
Q ss_pred HHHHHHhcCCCCCCCceEeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCCcee
Q psy11422 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEA 330 (687)
Q Consensus 252 ~l~~L~~~Gf~~~~~~~~~~~~~ei~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~~~ 330 (687)
.|++|++|||+|+++..+|.+++++++|+++|.+.|..+||+||||||||||+.+|+.||+|+|+||||||||||+++-
T Consensus 235 ~l~~L~~~GF~v~~~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRWAiAyKfp~~~~ 313 (318)
T 3jsl_A 235 ALDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFTQKSPRWAIAYKFPAEEH 313 (318)
T ss_dssp HHHHHHHHTCCCCTTCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBTTEEEEECC----
T ss_pred HHHHHHHCCCCcCCcceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCHHHHHHhCCCCCCCCceEEECCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999863
No 7
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=100.00 E-value=5.8e-101 Score=813.78 Aligned_cols=322 Identities=39% Similarity=0.634 Sum_probs=297.8
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCccccCcccCCCCcceecccc
Q psy11422 9 INFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFK 88 (687)
Q Consensus 9 ~~~~~~~~~i~~L~~~l~~~~~~YY~~~~p~isD~~YD~L~~~L~~le~~~p~~~~~~spt~~Vg~~~~~~~~kv~H~~p 88 (687)
..+++++++|++|+++|++||++||++|+|+|||++||+|+++|++||++||++.+++|||++||+.+.++|.||+|++|
T Consensus 6 ~~~~~~~~~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~lE~~~P~l~~~dSPtqrVG~~~~~~f~kv~H~~p 85 (332)
T 1ta8_A 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVGGKVLSGFEKAPHDIP 85 (332)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHHHHHHHHCGGGCCTTCGGGGGCCCBCSSCCEEECSSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCccccCCCCCccccCccccccCCccCCCCc
Confidence 35566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhhccCCCeeEEEEEccceeEEEEEEeCCEEEEEEecCCCCccchhhhhhhhhccCCcc
Q psy11422 89 MMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLV 168 (687)
Q Consensus 89 MlSL~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~ 168 (687)
||||+|+||.+||.+|++|+.+.++ .++.|+|||||||+||+|+|+||+|++|+|||||.+|||||+|+++|++||++
T Consensus 86 MlSL~n~f~~eel~~w~~rv~~~l~--~~~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~IP~~ 163 (332)
T 1ta8_A 86 MYSLNDGFSKEDIFAFDERVRKAIG--KPVAYCCELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMR 163 (332)
T ss_dssp CCCCCEECSHHHHHHHHHHHHHHHS--SCCCEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTTSCSB
T ss_pred CCCccccCCHHHHHHHHHHHHHhcC--CCceEEEeeeecceEEEEEEECCEEEEEEcCCCCccchhHHHHHHHhcCCccc
Confidence 9999999999999999999998876 24789999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEecccccCCCCCCC
Q psy11422 169 LNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSS 248 (687)
Q Consensus 169 l~~~~~~~~~evRGEi~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~~~~~~~~~~~~ 248 (687)
|.. |..+||||||||++++|+++|++|.+.|+++|+||||+|||+|||+||++++.|+|+||+|+|+..++.. +.+
T Consensus 164 L~~---p~~leVRGEv~m~~~~F~~lN~~~~~~g~~~faNPRNaAAGsLrqld~~ita~R~L~ff~y~i~~~~~~~-~~t 239 (332)
T 1ta8_A 164 LTE---PISVEVRGECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK-AKT 239 (332)
T ss_dssp CSS---CCCEEEEEEEECCHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHTCSBHHHHHTSCCEEEEEEESCCTTCC-CSB
T ss_pred cCC---CCeEEEEEEEEEEHHHHHHHHHHHHhcCCccccChHHHHHHHHHccChhhHhhCCCEEEEEecccccCCC-CCC
Confidence 972 7889999999999999999999999999999999999999999999999999999999999997433323 489
Q ss_pred HHHHHHHHHhcCCCCCCCceEeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCCc
Q psy11422 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSK 328 (687)
Q Consensus 249 ~~e~l~~L~~~Gf~~~~~~~~~~~~~ei~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~ 328 (687)
|++.|++|++|||+++++..+|.+++++++|+++|.+.|..+||+||||||||||+.+|+.||+|+|+||||||||||++
T Consensus 240 ~~e~l~~L~~~GF~v~~~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~tsk~PRWAiAyKfpae 319 (332)
T 1ta8_A 240 QFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFALQDELGFTVKAPRWAIAYKFPPE 319 (332)
T ss_dssp HHHHHHHHHHTTCCCCTTCEEESSHHHHHHHHHHHHHTGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEECC--
T ss_pred HHHHHHHHHHcCCCCCCcceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEecCHHHHHHhCCcCCCCCceeEecCCCc
Confidence 99999999999999999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEE
Q psy11422 329 EALTKIKA 336 (687)
Q Consensus 329 ~~~T~v~~ 336 (687)
+++|+|..
T Consensus 320 e~~T~l~~ 327 (332)
T 1ta8_A 320 EAETVVZH 327 (332)
T ss_dssp --------
T ss_pred eEEEEEec
Confidence 99999874
No 8
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=100.00 E-value=8e-101 Score=809.34 Aligned_cols=315 Identities=42% Similarity=0.690 Sum_probs=295.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCccccCcccCCCCcceeccccccC
Q psy11422 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMS 91 (687)
Q Consensus 12 ~~~~~~i~~L~~~l~~~~~~YY~~~~p~isD~~YD~L~~~L~~le~~~p~~~~~~spt~~Vg~~~~~~~~kv~H~~pMlS 91 (687)
++++++|++|+++|++||++||++|+|+|||++||+|+++|++||++||++.+++|||++||+.+.++|.||+|++||||
T Consensus 4 ~~~~~~~~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~lE~~~P~l~~~dSPtqrVG~~~~~~f~kv~H~~pMlS 83 (318)
T 1b04_A 4 QQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPTQRIGGPPLEAFRKVAHRVPMMS 83 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSCCSSCHHHHHHHHHHHHHHHHCGGGCCTTCGGGGTCCCCCSCCCEECCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCccccCCCCCccccCccccccCCccCCCCcCcC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhhccCCCeeEEEEEccceeEEEEEEeCCEEEEEEecCCCCccchhhhhhhhhccCCccccc
Q psy11422 92 LDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI 171 (687)
Q Consensus 92 L~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~l~~ 171 (687)
|+|+||.+||.+|++|+.+.++ .+.|+|||||||+||+|+|+||+|++|+|||||.+|||||+|+++|++||++|+.
T Consensus 84 L~n~f~~eel~~f~~rv~~~l~---~~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~IP~~L~~ 160 (318)
T 1b04_A 84 LANAFGEGDLRDFDRRVRQEVG---EAAYVCELAIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLKE 160 (318)
T ss_dssp CCEECSTTHHHHHHHHHHHHHS---SCCEEEEEEESSEEEEEEEETTEEEEEEECTTSSCEEBCHHHHHTCTTSCSBCSS
T ss_pred ccccCCHHHHHHHHHHHHHhcc---CceEEEEEecccEEEEEEEECCEEEEEEccCCCcccHHHHHhHHHhcCCCcccCC
Confidence 9999999999999999998886 3689999999999999999999999999999999999999999999999999972
Q ss_pred CCCCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEecccccCCCCCCCHHH
Q psy11422 172 KYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251 (687)
Q Consensus 172 ~~~~~~~evRGEi~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~~~~~~~~~~~~~~e 251 (687)
|..+||||||||++++|+++|++|.+.|+++|+||||+|||+|||+||++++.|+|+||+|+|+..++.. +.+|++
T Consensus 161 ---p~~levRGEv~m~~~~F~~lN~~~~~~g~~~faNpRNaAAGsLrqld~~ita~R~L~ff~y~~~~~~~~~-~~t~~e 236 (318)
T 1b04_A 161 ---PVSLEARGEAFMPKASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALG-IASHSE 236 (318)
T ss_dssp ---CCCEEEEEEEECCHHHHHHHHHHHHHC--CCCSCHHHHHHHHHHSSCHHHHHHTCCEEEEEEETTTTTTT-CCBHHH
T ss_pred ---CCeEEEEEEEEEEHHHHHHHHHHHHHcCCCccchhhHHHHHHHHccChhhHhhCCCEEEEEecccccCCC-CCCHHH
Confidence 7889999999999999999999999999999999999999999999999999999999999997433323 489999
Q ss_pred HHHHHHhcCCCCCCCceEeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCCceee
Q psy11422 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEAL 331 (687)
Q Consensus 252 ~l~~L~~~Gf~~~~~~~~~~~~~ei~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~~~~ 331 (687)
.|++|++|||+++++.++|.+++++++|+++|.+.|..+||+||||||||||+.+|+.||+|+|+||||||||||+++++
T Consensus 237 ~l~~L~~~Gf~v~~~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRWAiA~Kfpaee~~ 316 (318)
T 1b04_A 237 ALDYLQALGFKVNPERRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFAQQRALGATAKSPRWAIAYKFPAEEVV 316 (318)
T ss_dssp HHHHHHHTTCCCCTTCEEESSHHHHHHHHHHHHHHSTTCSSCEEEEEEEECBHHHHHHHCCCSSSCTTEEEEECCCC---
T ss_pred HHHHHHHcCCCCCCcceEeCCHHHHHHHHHHHHHHHhhCCCCCCcEEEEecCHHHHHHhCCcCCCCCceeeecCCcceee
Confidence 99999999999999899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EE
Q psy11422 332 TK 333 (687)
Q Consensus 332 T~ 333 (687)
|+
T Consensus 317 T~ 318 (318)
T 1b04_A 317 TT 318 (318)
T ss_dssp --
T ss_pred cC
Confidence 85
No 9
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.2e-99 Score=801.47 Aligned_cols=316 Identities=37% Similarity=0.571 Sum_probs=298.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCccccCcc-cCCCCcceecccc
Q psy11422 10 NFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLV-GGENSKYVHHTFK 88 (687)
Q Consensus 10 ~~~~~~~~i~~L~~~l~~~~~~YY~~~~p~isD~~YD~L~~~L~~le~~~p~~~~~~spt~~Vg~~-~~~~~~kv~H~~p 88 (687)
.+..++++|++|+++|++||++||++|+|+|||++||+|+++|++||++||++.+++||||+||+. +.++|.||+|++|
T Consensus 9 ~~~~~~~~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~lE~~~P~l~~~dSPtqrVG~~~~~~~f~kv~H~~p 88 (328)
T 1zau_A 9 TAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPELRTPDSPTQLVGGAGFATDFEPVDHLER 88 (328)
T ss_dssp CHHHHHTTHHHHHHHHHHHHHHHTTTCCCSSCTHHHHHHHHHHHHHHHTSSTTCCTTCTTTTCSSCCCCCCCCCEECSSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCccccCCCCCccccCCccccccCCccCCCCC
Confidence 456667899999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhhccCCCeeEEEEEccceeEEEEEEeCCEEEEEEecCCCCccchhhhhhhhhccCCcc
Q psy11422 89 MMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLV 168 (687)
Q Consensus 89 MlSL~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~ 168 (687)
||||+|+||.+||.+|++|+.+.++ .++.|+|||||||+||+|+|+||+|++|+|||||.+|||||+|+++|++||++
T Consensus 89 MlSL~n~f~~eel~~f~~rv~~~l~--~~~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~IP~~ 166 (328)
T 1zau_A 89 MLSLDNAFTADELAAWAGRIHAEVG--DAAHYLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPER 166 (328)
T ss_dssp CCCCCCBSSHHHHHHHHHGGGTTTC--SCSCEEEEEEECSEEEEEECGGGBCCBCBBCTTSSEECBCHHHHHHSSSCCSB
T ss_pred CCCccccCCHHHHHHHHHHHHHhcC--CCcceEEeeecceEEEEEEEECCEEEEEEccCCCcccHHHHHHHHHhcCCChh
Confidence 9999999999999999999998875 24689999999999999999999999999999999999999999999999999
Q ss_pred c-ccC--CCCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEecccccCCCC
Q psy11422 169 L-NIK--YPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM 245 (687)
Q Consensus 169 l-~~~--~~~~~~evRGEi~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~~~~~~~~~ 245 (687)
| .+. +.|..+||||||||++++|+++|++|.+.|+++|+||||+|||+|||+||+++++|+|+||+|+++..++..
T Consensus 167 L~~g~~~~~p~~leVRGEv~m~~~~F~~lN~~~~~~g~~~faNPRNaAAGsLrqld~~ita~R~L~f~~y~i~~~~~~~- 245 (328)
T 1zau_A 167 LTPGDDYPVPEVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFR- 245 (328)
T ss_dssp CCCBTTBCCCSCCEEEEEEBCCHHHHHHHHHSCSSTTSCCCSSHHHHHHHHHTCSSHHHHHHSCCBCCCCBCCCCSSCC-
T ss_pred hccCCcCCCCCeEEEEEEEEEEHHHHHHHHHHHHHcCCccccChHHHHHHHHHccChhhhhcCcceEEEEeccccCCCC-
Confidence 9 532 257889999999999999999999999999999999999999999999999999999999999997433222
Q ss_pred CCCHHHHHHHHHhcCCCCCCCceEeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecC
Q psy11422 246 PSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKF 325 (687)
Q Consensus 246 ~~~~~e~l~~L~~~Gf~~~~~~~~~~~~~ei~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf 325 (687)
+.+|++.|++|++|||+|+++.++|.+++++++|+++|.+.|..+||+||||||||||+.+|+.||+|+|+|||||||||
T Consensus 246 ~~t~~e~l~~L~~~Gf~v~~~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRWAiAyKf 325 (328)
T 1zau_A 246 PATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAIAYKY 325 (328)
T ss_dssp CSBHHHHHHHHHTTTCCCCCCCCCBCHHHHHHHHHHHTTTTCSSCSSCEEEEEEEECBHHHHTTSCBCSSSBSSCCCEEC
T ss_pred CCCHHHHHHHHHHcCCCCCCceEEeCCHHHHHHHHHHHHHHHhcCCCCCceEEEEecCHHHHHHhCccCCCCCceeEeCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc
Q psy11422 326 LSK 328 (687)
Q Consensus 326 ~~~ 328 (687)
|++
T Consensus 326 pae 328 (328)
T 1zau_A 326 PPE 328 (328)
T ss_dssp CCC
T ss_pred CCC
Confidence 985
No 10
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=8.7e-98 Score=786.72 Aligned_cols=305 Identities=37% Similarity=0.600 Sum_probs=265.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCccccCcccCCCCcceeccccccCCC
Q psy11422 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMSLD 93 (687)
Q Consensus 14 ~~~~i~~L~~~l~~~~~~YY~~~~p~isD~~YD~L~~~L~~le~~~p~~~~~~spt~~Vg~~~~~~~~kv~H~~pMlSL~ 93 (687)
+++||++|+++|++||++||+.|+|+|||++||+|+++|++||++||++.+++|||++||+.+..+|.||+|++|||||+
T Consensus 1 i~~ri~~L~~~i~~~~~~YY~~~~p~IsD~eYD~L~~eL~~le~~~P~~~~~~sPt~~VG~~~~~~f~kv~H~~pMlSL~ 80 (305)
T 4glw_A 1 MNKRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVGGKVLDGFEKYSHQYPLYSLQ 80 (305)
T ss_dssp -CHHHHC-----------------------------CHHHHHHHHSGGGCCTTCGGGGSCCCBCSSCEEEECSSCCCCCC
T ss_pred ChHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCccccCCCCCccccCccccccccceeeeeeeeccC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhccCCCeeEEEEEccceeEEEEEEeCCEEEEEEecCCCCccchhhhhhhhhccCCcccccCC
Q psy11422 94 NGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKY 173 (687)
Q Consensus 94 k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~l~~~~ 173 (687)
|+|+.+||.+|++|+.+.++ ...|+|||||||+||+|+|+||+|++|+|||||.+|||||+|+++|++||++|+.
T Consensus 81 n~~~~~el~~f~~r~~~~l~---~~~~~~epKiDGlavsL~Y~~G~L~~a~TRGDG~~GeDiT~n~~tI~~IP~~l~~-- 155 (305)
T 4glw_A 81 DAFSREELDAFDARVRKEVA---HPTYICELKIDGLSISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPE-- 155 (305)
T ss_dssp EECSHHHHHHHHHHHTTTCS---SCCEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEECHHHHTTSTTSCSBCSS--
T ss_pred CcCCHHHHHHHHHHHHHhcC---CCcEEEEeeecceEEEEEEeCCeEEEEEecCCCcchhhHHHHHhhccCCcccCCC--
Confidence 99999999999999998876 4689999999999999999999999999999999999999999999999999974
Q ss_pred CCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEecccccCCCCCCCHHHHH
Q psy11422 174 PPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253 (687)
Q Consensus 174 ~~~~~evRGEi~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~~~~~~~~~~~~~~e~l 253 (687)
|..+||||||||++++|+++|+++.+.|+++|+||||+|||+|||+||++++.|+|+||+|++..+++ +.+|++.|
T Consensus 156 -~~~levRGEv~m~~~~F~~~n~~~~~~g~~~faNpRNaaAGslrq~d~~~~~~r~L~f~~y~~~~~~~---~~s~~e~l 231 (305)
T 4glw_A 156 -ELDITVRGECYMPRASFDQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPST---RDSQEKGL 231 (305)
T ss_dssp -CCCEEEEEEEECCHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHSSSBHHHHHHSCCEEEEEEESSSCS---SSBHHHHH
T ss_pred -cccccccceEEeehhhHHHHHHHHHhcCCccchhhhHHHhhhhhccCchhhhhhcceEEEeeeccccc---cchHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999886654 57999999
Q ss_pred HHHHhcCCCCCCCceEeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCC
Q psy11422 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLS 327 (687)
Q Consensus 254 ~~L~~~Gf~~~~~~~~~~~~~ei~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~ 327 (687)
++|++|||+++++..+|.+++++++|+++|.+.|..+||+|||||||||++.+|+.||+|+|+|||||||||||
T Consensus 232 ~~L~~~Gf~~~~~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGiVikvn~~~~q~~lG~tsk~PrWAiA~KfpA 305 (305)
T 4glw_A 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFPA 305 (305)
T ss_dssp HHHHHHTCCCCCCCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEECBHHHHHHHCBCSSSBSSEEEEECCC
T ss_pred HHHHhCCCccCCceEEeCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEEeCHHHHHHcCCcCCCCCceEEeCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997
No 11
>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5}
Probab=100.00 E-value=5e-38 Score=341.81 Aligned_cols=223 Identities=15% Similarity=0.141 Sum_probs=190.4
Q ss_pred CCCChHHHHHHHHHHHHHHHHCCCCCCCCCCccccCcccCCCCcceeccccccCCCCCCChHHHHHHHHHHHHhhccCCC
Q psy11422 38 PIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN 117 (687)
Q Consensus 38 p~isD~~YD~L~~~L~~le~~~p~~~~~~spt~~Vg~~~~~~~~kv~H~~pMlSL~k~~~~~el~~~~~~~~~~l~~~~~ 117 (687)
+.-.|++||+|+++|+.||++| ++. ||+.+..+|+++ .||+||+|+++. |.+ +
T Consensus 42 ~~~~D~eyd~l~~el~~lE~~~-~~~--------vg~~~~~~fpkv---~~mlsL~~~~~~-----~~~-~--------- 94 (389)
T 2vug_A 42 DEFDGIRYVRFKDSAGKLRRGT-VVI--------DEEYVIPGFPHI---KRIINLRSGIRR-----IFK-R--------- 94 (389)
T ss_dssp CCTTSCCEEECSSCBTTBCTTC-EEE--------ETTEEECCCCCC---EEESSSHHHHHH-----HSS-S---------
T ss_pred cccCCHHHHHHHHHHHHHHhhc-eee--------eCcEEccCCCCc---ccccCchhhhhh-----hcc-C---------
Confidence 4567999999999999999998 765 898888899988 899999999643 542 1
Q ss_pred eeEEEEEccceeEEEEEEeCCEEEEEEecCCCCccchhhhhhhhhcc-CCcccccCCCCceEEEEEEEEeehhhHHHHHH
Q psy11422 118 IEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHK-IPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196 (687)
Q Consensus 118 ~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~-iP~~l~~~~~~~~~evRGEi~~~~~~F~~~n~ 196 (687)
..|+||+|+||+++++.|++|+ ++|.|||+|. +|||+| +|++ ||..|... |..++||||+||+...|+++|
T Consensus 95 ~~~vvEeKlDG~~v~l~y~~G~-v~a~TRg~g~--e~iT~n--~i~~wip~~L~~~--~~~l~L~GEvv~~~~~f~~~n- 166 (389)
T 2vug_A 95 GEFYVEEKVDGYNVRVVMYKGK-MLGITRGGFI--CPFTTE--RIPDFVPQEFFKD--NPNLILVGEMAGPESPYLVEG- 166 (389)
T ss_dssp CEEEEEEECCSEEEEEEEETTE-EEEEETTSCB--CHHHHH--HGGGTSCTHHHHH--CTTEEEEEEEESSSCSSCSCC-
T ss_pred CeEEEEEeecCcEEEEEEECCE-EEEEeCCCCC--CCCchh--hhhHhHHHHHhcC--CCcEEEEEEEEecCChHHHhc-
Confidence 3799999999999999999999 8999999999 999999 8888 89777532 567999999999999886433
Q ss_pred HHHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEecccccCCCCCCCHHHHHHHHHhcCCCCCCCceEeC--CHH
Q psy11422 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVLS--GVN 274 (687)
Q Consensus 197 ~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~~~~~~~~~~~~~~e~l~~L~~~Gf~~~~~~~~~~--~~~ 274 (687)
++|| .|++.||+|++...++..+ .++.+.+++|+++||++++....+. +.+
T Consensus 167 ---------~~np-----------------~r~l~F~vFDV~~~~~g~~-~s~~er~~~L~~lG~~~vp~~~~~~~~~~e 219 (389)
T 2vug_A 167 ---------PPYV-----------------KEDIQFFLFDVQEIKTGRS-LPVEERLKIAEEYGINHVEVFGKYTKDDVD 219 (389)
T ss_dssp ---------CTTC-----------------CSSCEEEEEEEEETTTCCB-CCHHHHHHHHHHHTCCBCCEEEEEEGGGHH
T ss_pred ---------ccCc-----------------ccCCEEEEEEeeccCCCCc-CCHHHHHHHHHHcCCCCCCeEEEEcCCCHH
Confidence 2444 5789999999964332223 6899999999999999998776666 789
Q ss_pred HHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCc---eEeecCCCcee
Q psy11422 275 KLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRF---ALAYKFLSKEA 330 (687)
Q Consensus 275 ei~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~Prw---aiA~Kf~~~~~ 330 (687)
++.++++.|. +|.+||+|+|+++.. +.+|+|+++||| |+|||||+++.
T Consensus 220 el~~~i~~~~------~~~~EGvViK~~d~~--~~lkyt~~~pr~~dlaiA~Kfp~e~~ 270 (389)
T 2vug_A 220 ELYQLIERLS------KEGREGIIMKSPDMK--KIVKYVTPYANINDIKIGARVFYELP 270 (389)
T ss_dssp HHHHHHHHHH------HTTCCEEEEECTTSC--CEEEEECHHHHHHHHHHHHTTGGGSC
T ss_pred HHHHHHHHhc------CCCCCeEEEEECChh--hhcCceecCCCCcceEEEEecccccc
Confidence 9999999886 899999999999977 789999999999 99999999974
No 12
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=169.45 Aligned_cols=80 Identities=44% Similarity=0.679 Sum_probs=75.9
Q ss_pred CCCccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCCCC-ccHHHHHHcCCeEEeHHHHHHHHhcc
Q psy11422 603 NKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPG-KKLEKAIKLNIKILDEKNFVKIVKGF 681 (687)
Q Consensus 603 ~~~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g-~Kl~kA~~lgI~Ii~E~~f~~~l~~~ 681 (687)
..++|.|++|||||+|..++|++++++|+++||+|++|||++|||||+|+++| +|++||++|||+||+|++|++||+..
T Consensus 19 ~~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~~lgI~IisE~~f~~ll~~~ 98 (112)
T 2ebu_A 19 AENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTM 98 (112)
T ss_dssp CSSSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHHHHTCEEEEHHHHHHHHHHS
T ss_pred CCCCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHHHHcCCeEEeHHHHHHHHhhC
Confidence 34689999999999999899999999999999999999999999999999999 99999999999999999999999754
Q ss_pred c
Q psy11422 682 S 682 (687)
Q Consensus 682 s 682 (687)
.
T Consensus 99 ~ 99 (112)
T 2ebu_A 99 P 99 (112)
T ss_dssp C
T ss_pred C
Confidence 3
No 13
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=99.82 E-value=8e-21 Score=166.15 Aligned_cols=80 Identities=38% Similarity=0.584 Sum_probs=75.8
Q ss_pred CCCccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCCCCccHHHHHHcCCeEEeHHHHHHHHhccc
Q psy11422 603 NKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGFS 682 (687)
Q Consensus 603 ~~~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g~Kl~kA~~lgI~Ii~E~~f~~~l~~~s 682 (687)
..++|.|++|||||+|+. +|++++++|+++||+|++|||++|||||+|+++|+|++||+++||+||+|++|++||...+
T Consensus 4 ~~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~lgI~Ii~E~~f~~~l~~~~ 82 (92)
T 1l7b_A 4 GGEALKGLTFVITGELSR-PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLEART 82 (92)
T ss_dssp CCCSSTTCEEECSTTTTS-CHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCSSSCCEEHHHHHHHHHHHH
T ss_pred CCCCcCCcEEEEecCCCC-CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHcCCcEEeHHHHHHHHHhcc
Confidence 356899999999999987 9999999999999999999999999999999999999999999999999999999998665
Q ss_pred C
Q psy11422 683 T 683 (687)
Q Consensus 683 ~ 683 (687)
+
T Consensus 83 g 83 (92)
T 1l7b_A 83 G 83 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 14
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=99.82 E-value=1.9e-20 Score=168.74 Aligned_cols=78 Identities=45% Similarity=0.695 Sum_probs=74.8
Q ss_pred CCCccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCCCC-ccHHHHHHcCCeEEeHHHHHHHHhc
Q psy11422 603 NKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPG-KKLEKAIKLNIKILDEKNFVKIVKG 680 (687)
Q Consensus 603 ~~~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g-~Kl~kA~~lgI~Ii~E~~f~~~l~~ 680 (687)
.+++|.|++|||||+|+.++|++++++|+++||+|++|||++|||||+|+++| +|++||+++||+||+|++|++||+.
T Consensus 29 ~~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f~~ll~~ 107 (109)
T 2k6g_A 29 AENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRN 107 (109)
T ss_dssp CTTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHHHHTCEEECHHHHHHHHHH
T ss_pred CCCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHHHcCCeEEeHHHHHHHHHh
Confidence 45689999999999999899999999999999999999999999999999999 9999999999999999999999964
No 15
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=99.71 E-value=8.2e-18 Score=152.24 Aligned_cols=74 Identities=24% Similarity=0.360 Sum_probs=67.4
Q ss_pred CCccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCC---CCccHHHHHHcCCeEEeHHHHHHHHh
Q psy11422 604 KNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQK---PGKKLEKAIKLNIKILDEKNFVKIVK 679 (687)
Q Consensus 604 ~~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~---~g~Kl~kA~~lgI~Ii~E~~f~~~l~ 679 (687)
..+|.|++|||||+|.. +|++++++|+++||+|++|||++|||||+|+. +|+|++||++|||+||+|++ +.++.
T Consensus 8 ~~~l~G~~~ViTG~l~~-~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~~-l~~~~ 84 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDF-LQDVS 84 (113)
T ss_dssp CCSSSSCEEEECSCCSS-CHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHHTTCCEECTHH-HHHHH
T ss_pred CCCcCCCEEEEEecCCC-CHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHHHCCCcEEeHHH-HHHHH
Confidence 45899999999999975 99999999999999999999999999999954 88999999999999999995 44443
No 16
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=2.7e-12 Score=119.01 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=71.5
Q ss_pred CCccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCCCCccHHHHHHcCCeEEeHHHHHHHHhc
Q psy11422 604 KNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 680 (687)
Q Consensus 604 ~~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g~Kl~kA~~lgI~Ii~E~~f~~~l~~ 680 (687)
..+|.|++|||||.+ ..+|++++++|+.+||++..+|+++||+||+++..++|+++|.++||+||++++|.+++..
T Consensus 20 ~~~f~g~~i~itG~~-~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~K~~~A~~~gi~IV~~~Wl~d~~~~ 95 (129)
T 2d8m_A 20 GKILQGVVVVLSGFQ-NPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHRM 95 (129)
T ss_dssp TTTSTTEEEEEESCC-TTHHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCHHHHHHHHHTCEEEETHHHHHHHHT
T ss_pred cccCCCeEEEEeCCC-cHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCChHHHHHHHCCCcEecHHHHHHHHHh
Confidence 347999999999998 4689999999999999999999999999999999999999999999999999999998853
No 17
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.29 E-value=5.8e-12 Score=112.80 Aligned_cols=78 Identities=12% Similarity=0.184 Sum_probs=69.8
Q ss_pred CCCCccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCCC---CccHHHHHHcCCeEEeHHHHHHHH
Q psy11422 602 GNKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKP---GKKLEKAIKLNIKILDEKNFVKIV 678 (687)
Q Consensus 602 ~~~~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~---g~Kl~kA~~lgI~Ii~E~~f~~~l 678 (687)
..+.+|.|++|||||.+. .+|.+++++|+++||++.++||++|++||+++++ ++|+++|+++||+||++++|.+.+
T Consensus 11 ~~~~~l~g~~i~isg~~~-~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~Wl~~c~ 89 (107)
T 3l3e_A 11 EAPKPLHKVVVCVSKKLS-KKQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLDCA 89 (107)
T ss_dssp ---CTTTTCEEEECGGGG-GGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHHHHHHH
T ss_pred cccCCCCCeEEEEeCCCh-HhHHHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHHHCCCeEecHHHHHHHH
Confidence 345789999999999997 7999999999999999999999999999997643 599999999999999999999988
Q ss_pred hc
Q psy11422 679 KG 680 (687)
Q Consensus 679 ~~ 680 (687)
..
T Consensus 90 ~~ 91 (107)
T 3l3e_A 90 QE 91 (107)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 18
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.94 E-value=2e-09 Score=116.53 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=70.2
Q ss_pred CccCCeEEEEEcCCCcCC---HHHHHHHHHhcCCEEcccccccccEEEEcCCCCccHHHHHHc-CCeEEeHHHHHHHHhc
Q psy11422 605 NYLKEKIFVFTGSLYAFK---RNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKL-NIKILDEKNFVKIVKG 680 (687)
Q Consensus 605 ~~l~g~~vv~TG~l~~~~---R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g~Kl~kA~~l-gI~Ii~E~~f~~~l~~ 680 (687)
.+|.|.+|||||.++.++ |.++..+++.+||+++++||++|++||+|...|+|+++|+++ ||+|+++++|.+.+..
T Consensus 281 ~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t~K~~~A~~~~~I~IV~~~Wl~~c~~~ 360 (372)
T 3ef0_A 281 KVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLSQ 360 (372)
T ss_dssp TTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCCHHHHHHHHSSSCCEEEHHHHHHHHHT
T ss_pred hhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCchHHHHHHhcCCCEEEcHHHHHHHHHh
Confidence 479999999999997544 599999999999999999999999999999889999999999 8999999999998853
No 19
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=98.86 E-value=2.6e-09 Score=112.50 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=71.0
Q ss_pred CCccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEccccc-ccccEEEEcCCCCccHHHHHHcCCeEEeHHHHHHHHhc
Q psy11422 604 KNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFIS-KNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 680 (687)
Q Consensus 604 ~~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVs-k~t~~LV~G~~~g~Kl~kA~~lgI~Ii~E~~f~~~l~~ 680 (687)
..+|.|.+|||||... .+|++++++|+.+||+++++++ ++||+||+++..|+|+++|+++||+|+++++|.+.+..
T Consensus 197 ~~~f~g~~i~~tG~~~-~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~~g~K~~~A~~~gi~IV~~~Wl~dsi~~ 273 (298)
T 3olc_X 197 CPIFLGCIICVTGLCG-LDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQKYECAKRWNVHCVTTQWFFDSIEK 273 (298)
T ss_dssp CCTTTTCEEEECSCCH-HHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSSCSHHHHHHHHTTCEEECHHHHHHHHHH
T ss_pred ccccCCeEEEEeCCCC-ccHHHHHHHHHHcCCEEeceecCCCceEEEEeCCCchHHHHHHHCCCeEEeHHHHHHHHHC
Confidence 3579999999999876 4899999999999999999999 89999999999999999999999999999999998863
No 20
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.77 E-value=9.8e-09 Score=112.85 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=70.4
Q ss_pred CccCCeEEEEEcCCCcC---CHHHHHHHHHhcCCEEcccccccccEEEEcCCCCccHHHHHHc-CCeEEeHHHHHHHHhc
Q psy11422 605 NYLKEKIFVFTGSLYAF---KRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKL-NIKILDEKNFVKIVKG 680 (687)
Q Consensus 605 ~~l~g~~vv~TG~l~~~---~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g~Kl~kA~~l-gI~Ii~E~~f~~~l~~ 680 (687)
.+|.|.+|||||.++.. .|.++..+++.+||+++++||++|++||++...|+|+++|+++ ||+||++++|.+.+..
T Consensus 351 ~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~t~K~~~A~~~g~IkIVs~~WL~dcl~~ 430 (442)
T 3ef1_A 351 KVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLSQ 430 (442)
T ss_dssp TTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECSCCCHHHHHHHHHSSSEEEEHHHHHHHHHH
T ss_pred cccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCCCCHHHHHHHhcCCCEEEeHHHHHHHHHc
Confidence 37999999999999654 5899999999999999999999999999999889999999999 5999999999998863
No 21
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=98.74 E-value=5.7e-09 Score=94.23 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=69.5
Q ss_pred CccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCCCCccHHHHHHcCCeEEeHHHHHHHHhc
Q psy11422 605 NYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 680 (687)
Q Consensus 605 ~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g~Kl~kA~~lgI~Ii~E~~f~~~l~~ 680 (687)
.+|.|.+|||||. +...|.+++++|+.+||+++..++++++.||+.+..+.|++.|.+.+|+|++.++|++-++.
T Consensus 20 p~F~g~~Ic~sGf-~~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~K~~~A~~~~i~IVs~eWl~dsi~~ 94 (112)
T 3l46_A 20 PPFQDCILSFLGF-SDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVKDLPFEPSKKLYVVKQEWFWGSIQM 94 (112)
T ss_dssp CTTTTCEECEESC-CHHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBSSCSSCCCSSCEEEEHHHHHHHHHH
T ss_pred CccCCeEEEEeCC-CHHHHHHHHHHHHHcCCEECcccCCCceEEEecCCchhhHHHHHHCCeeEecHHHHHHHHHc
Confidence 4899999999994 45689999999999999999999999999999998889999999999999999999998863
No 22
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=98.74 E-value=1.6e-08 Score=87.21 Aligned_cols=75 Identities=24% Similarity=0.261 Sum_probs=64.5
Q ss_pred CCCccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEccccc--ccccEEEEcCCCCccHHHHHHcCCeEEeHHHHHHHHhc
Q psy11422 603 NKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFIS--KNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 680 (687)
Q Consensus 603 ~~~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVs--k~t~~LV~G~~~g~Kl~kA~~lgI~Ii~E~~f~~~l~~ 680 (687)
.+.+|.|.+|||+|... .+|.+++++|+.+||++..+++ +++++||++...+.|..++ .|++|++++++.+.+..
T Consensus 4 ~~~~f~g~~~~i~g~~~-~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~~K~~~~--~~~~iV~~~Wi~dci~~ 80 (92)
T 4id3_A 4 SSKIFKNCVIYINGYTK-PGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPLKKRIEF--ANYKVVSPDWIVDSVKE 80 (92)
T ss_dssp --CTTTTCEEEECSCCS-SCHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCHHHHHHT--TTSCEECTHHHHHHHHH
T ss_pred cccccCCEEEEEeCCCC-cCHHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCHHHHHHc--CCCCEEcccHHHHHHHc
Confidence 35689999999999533 3899999999999999999999 8999999999877776544 79999999999998864
No 23
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=98.69 E-value=1.5e-08 Score=87.95 Aligned_cols=66 Identities=23% Similarity=0.405 Sum_probs=60.3
Q ss_pred cccCCHHHHHHHc-CCCCCCHHHHHHHHhhcCChHHHHhcCHHHHhcCCCCCHHHHHHHHHHHcchh
Q psy11422 514 SKLTTFSRFIYAL-GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPL 579 (687)
Q Consensus 514 sk~~~l~r~L~aL-GIp~vG~~~Ak~La~~f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ff~~~~ 579 (687)
.+...+.+++.+| +|||||+++|+.|+++|++++++..++.++|.+++|||+++|++|..+|+++.
T Consensus 22 ~~~~~~~~~~~~L~~IpgIG~~~A~~Ll~~fgs~~~l~~as~~eL~~i~GIG~~~a~~I~~~l~~~~ 88 (91)
T 2a1j_B 22 LEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 88 (91)
T ss_dssp HHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHHSCS
T ss_pred ccCCHHHHHHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHhhhh
Confidence 3445678999999 99999999999999999999999999999999999999999999999997653
No 24
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=98.64 E-value=3.9e-08 Score=103.57 Aligned_cols=75 Identities=20% Similarity=0.197 Sum_probs=70.4
Q ss_pred CCccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCCCCccHHHHHHcCCeEEeHHHHHHHHh
Q psy11422 604 KNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 679 (687)
Q Consensus 604 ~~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g~Kl~kA~~lgI~Ii~E~~f~~~l~ 679 (687)
+.+|.|.+||+||.... .|+++.++|+.+||++.++++++||+||+|...+.|+.+|.++||+|++++++.+++.
T Consensus 103 ~~~l~g~~~~~tG~~~~-~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t~Ky~~A~~~gi~IV~~~Wl~~c~~ 177 (298)
T 3olc_X 103 NMVMSDVTISCTSLEKE-KREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWE 177 (298)
T ss_dssp CCTTTTCEEEEESCCHH-HHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCSHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred ccccCCeEEEeCCCcHH-hHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCChHHHHHHHCCCeEeeHHHHHHHHH
Confidence 34789999999999865 8999999999999999999999999999999989999999999999999999998875
No 25
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.57 E-value=2.9e-08 Score=89.16 Aligned_cols=76 Identities=13% Similarity=0.119 Sum_probs=69.3
Q ss_pred CCccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCCCCccHHHHHHcCCeEEeHHHHHHHHhc
Q psy11422 604 KNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 680 (687)
Q Consensus 604 ~~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g~Kl~kA~~lgI~Ii~E~~f~~~l~~ 680 (687)
-.+|.|.+|||||. ....|.+++.+|+.+||+++..++++++.||+.+..+.|++.|.+.+|+|++.++|.+-+..
T Consensus 10 ~~~F~g~~i~~sg~-~~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~~K~~~a~~~~i~IV~~~Wl~dsi~~ 85 (109)
T 2cou_A 10 VPPFQDCILSFLGF-SDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVKDLPFEPSKKLFVVKQEWFWGSIQM 85 (109)
T ss_dssp CCTTTTCBEEEESS-CHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCSSCSSCCCTTSEEECHHHHHHHHHT
T ss_pred CCcCCCeEEEecCC-CHHHHHHHHHHHHHcCCEEecccCCCccEEEEeCCccHHHHHHHHCCCeEecHHHHHHHHHc
Confidence 34799999999995 44689999999999999999999999999999988789999999999999999999998753
No 26
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=98.56 E-value=1.2e-07 Score=81.93 Aligned_cols=60 Identities=25% Similarity=0.460 Sum_probs=55.6
Q ss_pred HHHHHHHc-CCCCCCHHHHHHHHhhcCChHHHHhcCHHHHhcCCCCCHHHHHHHHHHHcch
Q psy11422 519 FSRFIYAL-GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQP 578 (687)
Q Consensus 519 l~r~L~aL-GIp~vG~~~Ak~La~~f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ff~~~ 578 (687)
+.++..+| +|||||+++|+.|+++|++++++..++.++|.+++|||+++|++|..+|.++
T Consensus 14 ~~~~~~~L~~IpgIG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~~ 74 (89)
T 1z00_A 14 VSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEP 74 (89)
T ss_dssp HHHHHHHHTTSSSCCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 46777788 9999999999999999999999999999999999999999999999998654
No 27
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=98.41 E-value=3.9e-07 Score=75.56 Aligned_cols=55 Identities=29% Similarity=0.485 Sum_probs=52.1
Q ss_pred cCCCCCCHHHHHHHHhhcCChHHHHhcCHHHHhcCCCCCHHHHHHHHHHHcchhH
Q psy11422 526 LGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLH 580 (687)
Q Consensus 526 LGIp~vG~~~Ak~La~~f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ff~~~~n 580 (687)
.+|||||+.+|+.|+++|++++.+..++.++|..++|||+++|.+|..+|.++.+
T Consensus 17 ~~i~giG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~~~~ 71 (75)
T 1x2i_A 17 EGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVITAPYI 71 (75)
T ss_dssp TTSTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHSCCC
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHhCccc
Confidence 5999999999999999999999999999999999999999999999999987654
No 28
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=98.33 E-value=3.5e-07 Score=73.99 Aligned_cols=51 Identities=22% Similarity=0.414 Sum_probs=48.0
Q ss_pred cCCCCCCHHHHHHHHhhcCChHHHHhcCHHHHhcCCCCCHHH-HHHHHHHHcch
Q psy11422 526 LGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTT-VKAFIKFINQP 578 (687)
Q Consensus 526 LGIp~vG~~~Ak~La~~f~sld~l~~As~eeL~~I~GIG~~~-A~sI~~ff~~~ 578 (687)
..|||||+++++.|+++|+|++++..|+.++|.++ +|... |+.|++||+.+
T Consensus 7 ~~IpGIG~kr~~~LL~~Fgs~~~i~~As~eeL~~v--ig~~~~A~~I~~~l~~~ 58 (63)
T 2a1j_A 7 LKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSI--LGNAANAKQLYDFIHTS 58 (63)
T ss_dssp HTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHH--HSCHHHHHHHHHHHHCC
T ss_pred HcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHH--cCchHHHHHHHHHHhcc
Confidence 47999999999999999999999999999999999 89999 99999999754
No 29
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=98.28 E-value=5.2e-07 Score=75.93 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=48.9
Q ss_pred cCCCCCCHHHHHHHHhhcCChHHHHhcCHHHHhcCCCCCHHHHHHHHHHHc
Q psy11422 526 LGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576 (687)
Q Consensus 526 LGIp~vG~~~Ak~La~~f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ff~ 576 (687)
.+|||||+++|+.|+++|++++++..++.++|.+++|||+++|++|..+|+
T Consensus 27 ~~I~gIG~~~A~~Ll~~fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~~ 77 (78)
T 1kft_A 27 ETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 77 (78)
T ss_dssp GGCTTCSSSHHHHHHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred hcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999999999999999999999999999999985
No 30
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A*
Probab=98.25 E-value=8.5e-06 Score=85.64 Aligned_cols=200 Identities=13% Similarity=0.095 Sum_probs=123.1
Q ss_pred eeEEEEEccceeEEEEEEeCCEEEEEEecCCCCccchhhhhhhhhccCCcccccCCCCceEEEEEEEEeehhhHHHHHHH
Q psy11422 118 IEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197 (687)
Q Consensus 118 ~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~l~~~~~~~~~evRGEi~~~~~~F~~~n~~ 197 (687)
..|++|+|+||+-+.+ +| ++.|| .|+|+|. ..|. ..+.. .+ ...+-||+++...+|+.+...
T Consensus 19 ~~~~~E~K~DG~R~~~---~g---~l~SR----~g~~~t~--p~l~---~~~~~--~~-~~iLDGElv~~~~~F~~l~~~ 80 (297)
T 1fvi_A 19 FPCLATPKIAGIRSVK---QT---QMLSR----TFKPIRN--SVMN---RLLTE--LL-PEGSDGEISIEGATFQDTTSA 80 (297)
T ss_dssp SSEEEEECCCSEEEEE---SS---SEECT----TSCBCSC--HHHH---HHHHH--HS-CTTEEEEEECTTSCHHHHHHH
T ss_pred CcEEEEeeEeeeeEEe---cC---EEECC----CCcccCc--HHHH---HHHHh--cC-CeeEEEEEEECCCCHHHHHHH
Confidence 3699999999999876 88 88999 5888885 2111 11110 01 356889999988888876443
Q ss_pred HHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEecccccCCCCCCCHHHHHHHHHhc----C-------CCCCC-
Q psy11422 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKI----G-------LSICG- 265 (687)
Q Consensus 198 ~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~~~~~~~~~~~~~~e~l~~L~~~----G-------f~~~~- 265 (687)
+++.++. ...++.|++|++...+ . .....+..+.|+++ + +.+++
T Consensus 81 -------------------~~~~~~~--~~~~~~~~vFDll~l~-~--~~pl~eRr~~L~~~~~~~~~~~~~~~i~~~~~ 136 (297)
T 1fvi_A 81 -------------------VMTGHKM--YNAKFSYYWFDYVTDD-P--LKKYIDRVEDMKNYITVHPHILEHAQVKIIPL 136 (297)
T ss_dssp -------------------HHSCC------CCEEEEEEEECSSC-T--TSCHHHHHHHHHHHHHHCGGGGGCSSEEEEEC
T ss_pred -------------------hccCCCC--CccceEEEEEeccCCC-C--CCCHHHHHHHHHHHHhhcCCccccceEEEcCc
Confidence 2232322 2357999999998533 2 25677888777765 1 11122
Q ss_pred CceEeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCC----CceEeecCCCceeeEEEEEEEEe-
Q psy11422 266 EYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP----RFALAYKFLSKEALTKIKAINIQ- 340 (687)
Q Consensus 266 ~~~~~~~~~ei~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~P----rwaiA~Kf~~~~~~T~v~~I~~q- 340 (687)
....+.+.+++.++++...+ --.+|||+|--+..++. | +.+ .| +-+|- ...+...|.+..+-
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~------~g~EGlv~K~~ds~Y~~--G---Rs~~~~g~w-lK~K~-~~~~d~vVig~~~g~ 203 (297)
T 1fvi_A 137 IPVEINNITELLQYERDVLS------KGFEGVMIRKPDGKYKF--G---RSTLKEGIL-LKMKQ-FKDAEATIISMTALF 203 (297)
T ss_dssp CCEEECSHHHHHHHHHHHHH------TTCCSEEEECTTCCCCS--S---BCCTTTTSS-EEECC-CEEEEEEEEEEEESC
T ss_pred ceEecCCHHHHHHHHHHHHH------CCCcEEEEECCCCCcCC--C---CCCCCCCCe-EEECC-CCCEEEEEEEEEeCc
Confidence 02234678899998877643 34699999986654442 2 344 56 45553 45678888888886
Q ss_pred --------------------ecC--cceeeeEEEEEEEEECCEEEEEecCCCHHHHHh
Q psy11422 341 --------------------IGR--TGIITPVALLKPVLIDGITITRATLHNESEIYR 376 (687)
Q Consensus 341 --------------------vGR--TG~iTPvA~lePV~l~G~tVsraTLhN~~~i~~ 376 (687)
-|| +|.+--...-.| |..+.-.|..+-+..++
T Consensus 204 ~~~~~~~~~~~g~~~r~~~~~G~~~~g~~g~ll~~~~----g~~~~vgtGftd~~~~~ 257 (297)
T 1fvi_A 204 KNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDYD----GVVFSIGTGFDADQRRD 257 (297)
T ss_dssp C-------------------CCCTTCCCEEEEEECST----TCCEEECSSCCHHHHHH
T ss_pred cccccccccccccccccccCCCcccCCcEEEEEEccC----CeEEEECCCCCHHHHHH
Confidence 665 454322211112 66554448888887774
No 31
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=98.16 E-value=4.4e-06 Score=72.79 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=65.4
Q ss_pred CCCccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEccccc-ccccEEEEcCCCCccHHHHHHcCCeEEeHHHHHHHHhc
Q psy11422 603 NKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFIS-KNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 680 (687)
Q Consensus 603 ~~~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVs-k~t~~LV~G~~~g~Kl~kA~~lgI~Ii~E~~f~~~l~~ 680 (687)
....|+|..||++|... .+|++++.+|+.+||++....+ .++++||++...+.|++.|+ +++|++.+++.+-+..
T Consensus 9 ~~~lF~g~~~~isg~~~-~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~~~--~~~iV~p~Wl~dci~~ 84 (97)
T 2ebw_A 9 SSTIFSGVAIYVNGYTD-PSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK--GEKVIRPEWIVESIKA 84 (97)
T ss_dssp CCCTTTTCEEEECSSCS-SCHHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTTHHHHTS--SSCCBCTHHHHHHHHH
T ss_pred CCCCCCCeEEEEeCCCc-ccHHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChHHHHHhc--CCCEeChHHHHHHHHc
Confidence 45689999999999754 5899999999999999988776 68999999988788888776 9999999999998753
No 32
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=98.12 E-value=2e-06 Score=73.53 Aligned_cols=52 Identities=21% Similarity=0.419 Sum_probs=48.9
Q ss_pred cCCCCCCHHHHHHHHhhcCChHHHHhcCHHHHhcCCCCCHHH-HHHHHHHHcchh
Q psy11422 526 LGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTT-VKAFIKFINQPL 579 (687)
Q Consensus 526 LGIp~vG~~~Ak~La~~f~sld~l~~As~eeL~~I~GIG~~~-A~sI~~ff~~~~ 579 (687)
..|||||+++++.|+++|+++++|..|+.++|.++ ||... |+.|++||+.+.
T Consensus 21 ~~IpGIG~kr~~~LL~~FgSl~~i~~AS~eEL~~v--ig~~~~A~~I~~~l~~~~ 73 (84)
T 1z00_B 21 LKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSI--LGNAANAKQLYDFIHTSF 73 (84)
T ss_dssp HTCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHH--HSCHHHHHHHHHHHTSBH
T ss_pred HhCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHH--hCchHHHHHHHHHHHhhh
Confidence 48999999999999999999999999999999999 99999 999999998654
No 33
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=98.06 E-value=5.1e-05 Score=86.29 Aligned_cols=215 Identities=18% Similarity=0.164 Sum_probs=136.3
Q ss_pred eEEEEEccceeEEEEEEeCCEEEEEEecCCCCccchhhhhhhhhcc-CCcccccCCCCceEEEEEEEEeehh----hHHH
Q psy11422 119 EYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHK-IPLVLNIKYPPELLEVRCEVLIYKK----DFIK 193 (687)
Q Consensus 119 ~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~-iP~~l~~~~~~~~~evRGEi~~~~~----~F~~ 193 (687)
.|++|+|+||.-+.+.+.+|. ++..||+ |+|+|+....|.. +...+ |..+.+-||++.-.. .|+.
T Consensus 246 ~~~~E~K~DG~R~qi~~~g~~-v~l~SR~----g~d~t~~fPel~~~~~~~l-----~~~~iLDGElv~~~~g~~~~F~~ 315 (558)
T 3gde_A 246 TAAVEWKFDGSRVQVHWDGSR-VTIYSRR----LENVTNALPDIVEEIKKSV-----KPGVILDGEVIAVKEGKPMPFQH 315 (558)
T ss_dssp SEEEEEECSSEEEEEEECSSC-CEEEETT----CCBCGGGCHHHHHHHHHHB-----CSSEEEEEEEEEEETTEEECHHH
T ss_pred ceEEEEeEeeEEEEEEEeCCE-EEEEcCC----CCcccccchHHHHHHHhhC-----CCCeEEEeEEEEcCCCcCCCHHH
Confidence 599999999999998776665 6999995 8999987654432 22123 334899999999632 6877
Q ss_pred HHHHHHHcCCCCCCChhhhHHhHhhhcCcc--cccccccEEEEEecccccCCCC-CCCHHHHHHHHHhcCCCCCCCc---
Q psy11422 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPK--INKNKILHFFAHGVGELRGMNM-PSSHSELLNWYQKIGLSICGEY--- 267 (687)
Q Consensus 194 ~n~~~~~~g~~~f~NpRN~aaG~lr~~~~~--~~~~r~l~f~~y~~~~~~~~~~-~~~~~e~l~~L~~~Gf~~~~~~--- 267 (687)
+-.+. +++.+. .....++.|++|++...+| ++ ..+..+..+.|.++--+ .+..
T Consensus 316 L~~r~-------------------~~~~~~~~~~~~~pv~~~vFDlL~l~G-~l~~~pl~eRr~~L~~~~~~-~~~i~~~ 374 (558)
T 3gde_A 316 VLRRF-------------------RRKHDVAKMVEKIPLEAHFFDILYHDG-ECIDLPLRERRKLLESAVNE-SEKIKLA 374 (558)
T ss_dssp HHHHH-------------------HC--CTHHHHHHSCEEEEEEEEEEESS-BCTTSBHHHHHHHHHHHBCC-CSSEEEC
T ss_pred HHHHh-------------------ccccchhhHhhcCCeEEEEEEEEeeCC-CccCCCHHHHHHHHHHhcCC-CCeEEEe
Confidence 64321 111100 0123468999999987665 43 24788888888876322 2221
Q ss_pred --eEeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCCceeeEEEEEEEEeecC-c
Q psy11422 268 --SVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGR-T 344 (687)
Q Consensus 268 --~~~~~~~ei~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~~~~T~v~~I~~qvGR-T 344 (687)
..+.+.+++.++++...+ -..+|+|+|--|..++ -|. +...| +=+|-........|.+..|--|| +
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~------~g~EGlv~K~~ds~Y~--~G~--Rs~~W-lK~K~~~~t~D~vViG~~~g~Gkr~ 443 (558)
T 3gde_A 375 KQIVTDSVDEVRKMYDEAIS------AGHEGVMIKLPSSPYI--PGK--RGKNW-LKVKAIMETLDLVVVGGEWGEGKRS 443 (558)
T ss_dssp CEEEESCHHHHHHHHHHHHH------TTCCEEEEECTTCBCC--TTC--EEEEE-EEEESSCCCEEEEEEEEEECCTTGG
T ss_pred eeEecCCHHHHHHHHHHHHH------cCCceeEEecCCCCCC--CCC--cCCce-EEEecccceEEEEEEEEEeCCCCcc
Confidence 235688899998877653 2469999997654443 121 23345 45553356789999999998765 5
Q ss_pred ceeee--EEEEEEEEECCE--EEEEe-cCCCHHHHHhc
Q psy11422 345 GIITP--VALLKPVLIDGI--TITRA-TLHNESEIYRK 377 (687)
Q Consensus 345 G~iTP--vA~lePV~l~G~--tVsra-TLhN~~~i~~~ 377 (687)
|.++. ++..+|- +|. +|-++ |..+-+..+++
T Consensus 444 g~~g~lllg~~d~~--~g~l~~vgkvgsGftd~~~~~l 479 (558)
T 3gde_A 444 HWLSSFELACLDPV--TGKLLKVGRVATGFTEEDLEEL 479 (558)
T ss_dssp GSEEEEEEEEECTT--TCCEEEEEEECSSCCHHHHHHH
T ss_pred CccceEEEEEeeCC--CCEEEEEeeeCCCCCHHHHHHH
Confidence 56654 2233220 243 34554 78888777664
No 34
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis}
Probab=98.05 E-value=5.7e-05 Score=79.80 Aligned_cols=203 Identities=15% Similarity=0.166 Sum_probs=119.7
Q ss_pred eeEEEEEccceeEEEEEEeCCEEEEEEecCCCCccchhhhhhhhhccCCcccccCCCCceEEEEEEEEee----hhhHHH
Q psy11422 118 IEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIY----KKDFIK 193 (687)
Q Consensus 118 ~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~l~~~~~~~~~evRGEi~~~----~~~F~~ 193 (687)
..|++|+|+||.-+.+...+|. +++.|| .|+|+|+....+..+-..++ +..+.+-||+++. ..+|+.
T Consensus 25 ~~~~~E~K~DG~R~~~~~~~g~-v~l~SR----~g~~~t~~fPel~~~~~~l~----~~~~iLDGElv~~d~~g~~~F~~ 95 (310)
T 1vs0_A 25 SQWAFEGXWDGYRLLVEADHGA-VRLRSR----SGRDVTAEYPQLRALAEDLA----DHHVVLDGEAVVLDSSGVPSFSQ 95 (310)
T ss_dssp TTEEEEEECCSEEEEEEEETTE-EEEEET----TCCBCGGGCGGGHHHHHHTT----TCEEEEEEEEECBCTTSCBCHHH
T ss_pred CCEEEEEccCcEEEEEEEECCE-EEEEcC----CCCCchhhchhHHHHHHhCC----CccEEEeeEEEEECCCCCcCHHH
Confidence 3699999999999999888887 689999 57899886554333222221 2478999999994 336665
Q ss_pred HHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEecccccCCCC-CCCHHHHHHHHHhc----CCCCCCCce
Q psy11422 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM-PSSHSELLNWYQKI----GLSICGEYS 268 (687)
Q Consensus 194 ~n~~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~~~~~~~~~-~~~~~e~l~~L~~~----Gf~~~~~~~ 268 (687)
+... +++ ..+.|++|++...++.++ .....+..+.|.++ -+.+++...
T Consensus 96 l~~r-------------------~~~--------~~~~~~vFDll~~~g~~l~~~pl~eRr~~L~~~~~~~~i~~~~~~~ 148 (310)
T 1vs0_A 96 MQNR-------------------GRD--------TRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLP 148 (310)
T ss_dssp HHTC-------------------CTT--------SCCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHHHSCCCCCCCCC
T ss_pred HHhh-------------------ccC--------CcEEEEEEEeEEECCcCcccCCHHHHHHHHHHhccCCcEEECccCc
Confidence 4210 010 138999999987655332 24677777777664 233333221
Q ss_pred EeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCCceeeEEEEEEEEeecC-ccee
Q psy11422 269 VLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGR-TGII 347 (687)
Q Consensus 269 ~~~~~~ei~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~~~~T~v~~I~~qvGR-TG~i 347 (687)
.++.++++...+ -..+|+|+|--+..++. |. +.+.| +-+|- ...+...|.+..+.-|| +|.+
T Consensus 149 -----~~~~~~~~~~~~------~g~EGlv~K~~ds~Y~~--G~--Rs~~W-lK~K~-~~~~D~vv~G~~~g~G~r~g~~ 211 (310)
T 1vs0_A 149 -----GDGAQAFACSRK------HGWEGVIAKRRDSRYQP--GR--RCASW-VKDKH-WNTQEVVIGGWRAGEGGRSSGV 211 (310)
T ss_dssp -----SSHHHHHHHHHH------TTCCEEEEEETTCCCCT--TC--EEEEE-EEEES-SEEEEEEEEEEEC--------C
T ss_pred -----hHHHHHHHHHHH------cCCceEEEeCCCCCcCC--CC--cChHH-hccch-heEEEEEEEEEEcCCCCccCcc
Confidence 135556555432 34699999987754432 21 23334 45553 35677788777666654 3555
Q ss_pred ee--EEEEEEEEECC-EEEEEe-cCCCHHHHHh
Q psy11422 348 TP--VALLKPVLIDG-ITITRA-TLHNESEIYR 376 (687)
Q Consensus 348 TP--vA~lePV~l~G-~tVsra-TLhN~~~i~~ 376 (687)
+. ++..++ +| ..|.++ |..+.+..++
T Consensus 212 g~lllg~~d~---~g~~~vgkvgtGftd~~~~~ 241 (310)
T 1vs0_A 212 GSLLMGIPGP---GGLQFAGRVGTGLSERELAN 241 (310)
T ss_dssp CEEEEEEEET---TEEEEEEEECSSCCHHHHHH
T ss_pred ceEEEEEEcC---CCCEEEEEECCCCCHHHHHH
Confidence 43 222222 23 244466 7778777765
No 35
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=98.02 E-value=1.7e-05 Score=70.87 Aligned_cols=76 Identities=14% Similarity=0.060 Sum_probs=66.7
Q ss_pred CccCCeEEEEEcCCCc---CCHHHHHHHHHhcCCEEcccccccccEEEEcCCCCccHHHHHHcCCeEEeHHHHHHHHhc
Q psy11422 605 NYLKEKIFVFTGSLYA---FKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 680 (687)
Q Consensus 605 ~~l~g~~vv~TG~l~~---~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g~Kl~kA~~lgI~Ii~E~~f~~~l~~ 680 (687)
..|.|.+++|.+.... ...+.+..+++.+||+++.+++++++.||+.+..++|+++|++++|+|++.+++.+.+.+
T Consensus 6 p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~~~~~A~~~~i~iV~~~Wv~~C~~~ 84 (107)
T 3pa6_A 6 PILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQSTWDKAQKRGVKLVSVLWVEKCRTA 84 (107)
T ss_dssp CTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHHHHHHHHHHTCEEECHHHHHHHHHH
T ss_pred cccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCCChHHHHHhcCCCEEECHHHHHHHHHh
Confidence 4799999999887532 135789999999999999999999999999887779999999999999999999988753
No 36
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=97.95 E-value=0.00012 Score=83.39 Aligned_cols=216 Identities=17% Similarity=0.150 Sum_probs=135.2
Q ss_pred eEEEEEccceeEEEEEEeCCEEEEEEecCCCCccchhhhhhhhhcc-CCcccccCCCCceEEEEEEEEeeh-----hhHH
Q psy11422 119 EYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHK-IPLVLNIKYPPELLEVRCEVLIYK-----KDFI 192 (687)
Q Consensus 119 ~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~-iP~~l~~~~~~~~~evRGEi~~~~-----~~F~ 192 (687)
.|++|+|+||.-+.+.+.+|. ++..||+ |+|+|+....+.. +...++ ...+.+-||+++-. -.|+
T Consensus 243 ~~~~E~K~DG~R~~i~~~~g~-v~l~SR~----g~~~t~~fPel~~~~~~~l~----~~~~iLDGElv~~d~~g~~~~F~ 313 (561)
T 2cfm_A 243 EAEFEIKYDGARVQVHKDGSK-IIVYSRR----LENVTRAIPEIVEALKEAII----PEKAIVEGELVAIGENGRPLPFQ 313 (561)
T ss_dssp CEEEEEECCSEEEEEEEETTE-EEEECTT----CCBCGGGCHHHHHHHHHHBC----SSEEEEEEEEEEBCTTSSBCCTH
T ss_pred cEEEEEeEceEEEEEEEECCE-EEEEeCC----CCCchhhhhhHHHHHHHhCC----CcceEeeeEEEEEcCCCcccCHH
Confidence 699999999999999888886 6899996 8999976544322 111221 14689999999963 1577
Q ss_pred HHHHHHHHcCCCCCCChhhhHHhHhhhcCcc--cccccccEEEEEecccccCCCC-CCCHHHHHHHHHhcCCCCCCC---
Q psy11422 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPK--INKNKILHFFAHGVGELRGMNM-PSSHSELLNWYQKIGLSICGE--- 266 (687)
Q Consensus 193 ~~n~~~~~~g~~~f~NpRN~aaG~lr~~~~~--~~~~r~l~f~~y~~~~~~~~~~-~~~~~e~l~~L~~~Gf~~~~~--- 266 (687)
.+.... +++.+. .....++.|++|++...+|.++ .....+..+.|.++--+. +.
T Consensus 314 ~L~~r~-------------------~~~~~~~~~~~~~~~~~~vFDlL~l~g~~l~~~pl~eRr~~L~~~~~~~-~~i~~ 373 (561)
T 2cfm_A 314 YVLRRF-------------------RRKHNIEEMMEKIPLELNLFDVLYVDGQSLIDTKFIDRRRTLEEIIKQN-EKIKV 373 (561)
T ss_dssp HHHHHH-------------------HCCSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-SSEEE
T ss_pred HHHHHh-------------------hcccchhhhcccCceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhCcC-CcEEE
Confidence 664431 111110 1123479999999987665332 256888888998763321 11
Q ss_pred --ceEeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCCceeeEEEEEEEEeecC-
Q psy11422 267 --YSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGR- 343 (687)
Q Consensus 267 --~~~~~~~~ei~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~~~~T~v~~I~~qvGR- 343 (687)
...+.+.+++.++++...+ -..+|+|+|--+..++- | .+...| +=+|-..+.....|.+..|--||
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~------~g~EGlv~K~~ds~Y~~--G--~Rs~~W-lK~K~~~dt~D~vViG~~~g~Gkr 442 (561)
T 2cfm_A 374 AENLITKKVEEAEAFYKRALE------MGHEGLMAKRLDAVYEP--G--NRGKKW-LKIKPTMENLDLVIIGAEWGEGRR 442 (561)
T ss_dssp CCEEEESCHHHHHHHHHHHHH------TTCCEEEEECTTCCCCT--T--CEEEEE-EEECSSCCCEEEEEEEEEECSGGG
T ss_pred eeeEEcCCHHHHHHHHHHHHH------cCCceeEEeCCCCCCCC--C--CcCCCe-EEEcccCcceeEEEEEEEeCCCCC
Confidence 1235688899998877653 34699999987644431 2 123335 34443335788899998887765
Q ss_pred cceeeeEE--EEEEEEECCE--EEEE-ecCCCHHHHHh
Q psy11422 344 TGIITPVA--LLKPVLIDGI--TITR-ATLHNESEIYR 376 (687)
Q Consensus 344 TG~iTPvA--~lePV~l~G~--tVsr-aTLhN~~~i~~ 376 (687)
+|.++..- ..+|= +|. +|.+ .|..+-+..++
T Consensus 443 ~g~~g~lllg~~d~~--~~~~~~vgkvgsGftd~~~~~ 478 (561)
T 2cfm_A 443 AHLFGSFILGAYDPE--TGEFLEVGKVGSGFTDDDLVE 478 (561)
T ss_dssp TTSEEEEEEEEECTT--TCCEEEEEEECSSCCHHHHHH
T ss_pred CCccceEEEEEEeCC--CCeEEEEeEeCCCCCHHHHHH
Confidence 56655422 23220 132 3334 36677766665
No 37
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1
Probab=97.90 E-value=0.00017 Score=77.25 Aligned_cols=230 Identities=15% Similarity=0.064 Sum_probs=131.0
Q ss_pred eEEEEEccceeEEEEEEe-CCEEEEEEecCCCCccchhhhhhhhhccCCc---cccc--CCCCceEEEEEEEEeehhhHH
Q psy11422 119 EYIAELKFDGIAVNLRYE-YGYLKQASTRGDGNIGENITTNIHIIHKIPL---VLNI--KYPPELLEVRCEVLIYKKDFI 192 (687)
Q Consensus 119 ~~~~e~KiDGlsi~l~Y~-~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~---~l~~--~~~~~~~evRGEi~~~~~~F~ 192 (687)
.|.+|+|+||.-+.+.+. +|. ++..||. |.|+++........|. .|.. ...|..+.+-||+++....|+
T Consensus 27 ~~~~E~K~DG~R~~~~~~~~g~-v~l~SR~----g~~~~~l~~~~~~~p~~~~~l~~~~~~~~~~~iLDGElv~~~~~F~ 101 (348)
T 1a0i_A 27 YLIAEIKYDGVRGNICVDNTAN-SYWLSRV----SKTIPALEHLNGFDVRWKRLLNDDRCFYKDGFMLDGELMVKGVDFN 101 (348)
T ss_dssp SEEEEECCCSEEEEEEEETTSE-EEEECTT----SCBCGGGGGGCEECHHHHHHHHSTTCCCTTEEEEEEEEEESSSCTT
T ss_pred cEEEEEeeceeEEEEEEeCCCe-EEEEcCC----CCCCcchhhhhcccchHHHHHhhhhccCCCCEEEEEEEEEeCCCHH
Confidence 699999999999999887 565 6899994 5566653321110111 1111 013568999999999766777
Q ss_pred HHHHHHHHcC--C----CCCCChhhhHHhHhhhcCcc---cccccccEEEEEeccccc----CCCC----CCCHHHHHHH
Q psy11422 193 KLNKYRYHLG--L----KKFTNPRNAAAGILRQLNPK---INKNKILHFFAHGVGELR----GMNM----PSSHSELLNW 255 (687)
Q Consensus 193 ~~n~~~~~~g--~----~~f~NpRN~aaG~lr~~~~~---~~~~r~l~f~~y~~~~~~----~~~~----~~~~~e~l~~ 255 (687)
.+........ . ..+.+-|... ...+. .....++.|++|++...+ |.++ .....+..+.
T Consensus 102 ~l~~~~~~k~~~~k~v~~~~~~~r~~~-----~~~~~i~~~~~~~~~~~~vFDll~l~~~~~G~~l~~~~~~pl~eRr~~ 176 (348)
T 1a0i_A 102 TGSGLLRTKWTDTKNQEFHEELFVEPI-----RKKDKVPFKLHTGHLHIKLYAILPLHIVESGEDCDVMTLLMQEHVKNM 176 (348)
T ss_dssp THHHHHHCCSCCSSBSSCC-------------CCCSCCCCCBCTTTEEEEEEEEEEHHHHHHCCCEEEEHHHHHHHHHHH
T ss_pred HHHHHhccccccccccccccccccccc-----ccccccccccccCcEEEEEEeeEeeCCCCCCccchhhccCCHHHHHHH
Confidence 6544321100 0 0011111110 00110 123567999999998755 4332 1245666666
Q ss_pred HHhc--CCC-----CCCCceEeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCCc
Q psy11422 256 YQKI--GLS-----ICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSK 328 (687)
Q Consensus 256 L~~~--Gf~-----~~~~~~~~~~~~ei~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~ 328 (687)
|.++ .++ +++ ...+.+.+++.++++...+ -..+|||+|--+..++. |.. ..|- =+| +..
T Consensus 177 L~~l~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~------~g~EGlv~K~~ds~Y~~--Grr---~~wl-K~K-~~~ 242 (348)
T 1a0i_A 177 LPLLQEYFPEIEWQAAE-SYEVYDMVELQQLYEQKRA------EGHEGLIVKDPMCIYKR--GKK---SGWW-KMK-PEN 242 (348)
T ss_dssp HHHHHHHCTTSEEEECC-EEEESSHHHHHHHHHHHHT------TTCCCEEEECTTCEECS--EEE---EEEE-EES-CCE
T ss_pred HHHHhhhCCCCeEEEec-cEecCCHHHHHHHHHHHHH------cCCceEEEeCCCCCCCC--CCc---cCcE-EEe-ecc
Confidence 6653 222 122 2235678899988876643 33599999997755542 222 1253 455 344
Q ss_pred eeeEEEEEEEEeecC---cceeeeEEEEEEEEECCEEEEEecCCCHHHHHh
Q psy11422 329 EALTKIKAINIQIGR---TGIITPVALLKPVLIDGITITRATLHNESEIYR 376 (687)
Q Consensus 329 ~~~T~v~~I~~qvGR---TG~iTPvA~lePV~l~G~tVsraTLhN~~~i~~ 376 (687)
.+...|.+..|--|| +|.+....-.. =+|.-+ .+|..+.+..++
T Consensus 243 ~~D~vViG~~~g~g~r~~~g~~~~~~~~~---~~g~~~-~gtGftd~~~~~ 289 (348)
T 1a0i_A 243 EADGIIQGLVWGTKGLANEGKVIGFEVLL---ESGRLV-NATNISRALMDE 289 (348)
T ss_dssp EEEEEEEEEECCCTTTSSCSSCCEEEEEC---TTSCEE-EEBCCCSHHHHH
T ss_pred cEEEEEEEEEeCCCCccCCceEEEEEEEe---CCCCEE-EccCCCHHHHHH
Confidence 788899999998887 57665543211 155433 478887765554
No 38
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=97.89 E-value=1.6e-06 Score=87.15 Aligned_cols=50 Identities=30% Similarity=0.365 Sum_probs=0.0
Q ss_pred cCCCCCCHHHHHHHHhhcCChHHHHhcCHHHHhcCCCCCHHHHHHHHHHHc
Q psy11422 526 LGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576 (687)
Q Consensus 526 LGIp~vG~~~Ak~La~~f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ff~ 576 (687)
.+|||||+++++.|+++|+|++++..|+.++|.++ |||+++|++|++||+
T Consensus 176 ~~IpGIG~k~ak~Ll~~FGSl~~i~~As~eeL~~V-GIG~~~A~~I~~~f~ 225 (226)
T 3c65_A 176 DDIPGVGEKRKKALLNYFGSVKKMKEATVEELQRA-NIPRAVAEKIYEKLH 225 (226)
T ss_dssp ---------------------------------------------------
T ss_pred cccCCCCHHHHHHHHHHhCCHHHHHhCCHHHHHHc-CCCHHHHHHHHHHhh
Confidence 48999999999999999999999999999999999 999999999999985
No 39
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=97.89 E-value=5.8e-06 Score=82.75 Aligned_cols=49 Identities=22% Similarity=0.388 Sum_probs=46.8
Q ss_pred cCCCCCCHHHHHHHHhhcCChHHHHhcCHHHHhcCCCCCH-HHHHHHHHHHc
Q psy11422 526 LGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGS-TTVKAFIKFIN 576 (687)
Q Consensus 526 LGIp~vG~~~Ak~La~~f~sld~l~~As~eeL~~I~GIG~-~~A~sI~~ff~ 576 (687)
.||||||+++++.|+++|+|++++..|+.++|.++ ||+ ++|++|++||+
T Consensus 171 dgIpGIG~k~ak~Ll~~FgSl~~i~~As~EeL~~V--IG~~~~A~~I~~~f~ 220 (220)
T 2nrt_A 171 DNVPGIGPIRKKKLIEHFGSLENIRSASLEEIARV--IGSTEIARRVLDILG 220 (220)
T ss_dssp TTSTTCCHHHHHHHHHHHCSHHHHHTSCHHHHHHH--HTCHHHHHHHHHHC-
T ss_pred cCCCCcCHHHHHHHHHHcCCHHHHHhCCHHHHHHH--hChHHHHHHHHHHhC
Confidence 59999999999999999999999999999999999 999 99999999984
No 40
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=97.86 E-value=1.5e-05 Score=79.88 Aligned_cols=53 Identities=23% Similarity=0.433 Sum_probs=50.7
Q ss_pred cCCCCCCHHHHHHHHhhcCChHHHHhcCHHHHhcCCCCCHHHHHHHHHHHcch
Q psy11422 526 LGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQP 578 (687)
Q Consensus 526 LGIp~vG~~~Ak~La~~f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ff~~~ 578 (687)
.+|||||++.|+.|+++|++++++..|+.++|.+++|||+++|++|.+||+.+
T Consensus 165 ~~i~gVg~~~a~~Ll~~fgs~~~l~~a~~e~L~~v~GiG~~~a~~i~~~~~~~ 217 (219)
T 2bgw_A 165 QSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKILMTP 217 (219)
T ss_dssp HTSTTCCHHHHHHHHHHHSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHHHSC
T ss_pred hcCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHhcc
Confidence 39999999999999999999999999999999999999999999999999765
No 41
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=97.86 E-value=0.00022 Score=81.38 Aligned_cols=234 Identities=15% Similarity=0.149 Sum_probs=143.7
Q ss_pred cccccCCCCCCChHHHHHHHHHHHHhhccCCCeeEEEEEccceeEEEEEEeCCEEEEEEecCCCCccchhhhh-hhhhc-
Q psy11422 86 TFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTN-IHIIH- 163 (687)
Q Consensus 86 ~~pMlSL~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n-~~~i~- 163 (687)
-.|||.- .+.+.+++ +++. +..|++|+|+||.-+.+.+.+|. ++..||+ |+|++.- +..+.
T Consensus 227 v~PMLA~-~~~~~~~~---~~~~--------~~~~~~E~K~DG~R~qih~~g~~-v~l~SR~----g~~~~p~~~~~l~~ 289 (579)
T 3l2p_A 227 VQPMLAE-ACKSVEYA---MKKC--------PNGMFSEIKYDGERVQVHKNGDH-FSYFSRS----LKPVLPHKVAHFKD 289 (579)
T ss_dssp CCCCEEE-ECCCHHHH---HHHC--------TTCEEEEECCCSEEEEEEEETTE-EEEECTT----SCBCCGGGTTTGGG
T ss_pred CCCccCC-cCCCHHHH---HhhC--------CCCeEEEEccCcEEEEEEEECCE-EEEECCC----CCccChhHHHHHHH
Confidence 4589753 24455553 2221 23689999999999998887775 7999996 6777533 22221
Q ss_pred cCCcccccCCCCceEEEEEEEEeehh------hHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEec
Q psy11422 164 KIPLVLNIKYPPELLEVRCEVLIYKK------DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGV 237 (687)
Q Consensus 164 ~iP~~l~~~~~~~~~evRGEi~~~~~------~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~ 237 (687)
.||..++. ...+.+-||++.-.. .|+.+.. +.|+. ....++.|++|++
T Consensus 290 ~l~~~~~~---~~~~iLDGElv~~d~~~g~~~~F~~L~~-----------~~~~~------------~~~~~v~~~vFDl 343 (579)
T 3l2p_A 290 YIPQAFPG---GHSMILDSEVLLIDNKTGKPLPFGTLGV-----------HKKAA------------FQDANVCLFVFDC 343 (579)
T ss_dssp THHHHSTT---CSEEEEEEEEEEBCTTTCCBCCGGGGSH-----------HHHHH------------CSSCCEEEEEEEE
T ss_pred HHHHhcCc---CCceEEEeEEEEEeCCCCcccCHHHHHH-----------Hhhhh------------cccCCeEEEEEEe
Confidence 13333321 236899999998542 4654311 01110 0124789999999
Q ss_pred ccccCCCC-CCCHHHHHHHHHhcCCCCCCCce-----EeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhC
Q psy11422 238 GELRGMNM-PSSHSELLNWYQKIGLSICGEYS-----VLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311 (687)
Q Consensus 238 ~~~~~~~~-~~~~~e~l~~L~~~Gf~~~~~~~-----~~~~~~ei~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG 311 (687)
...+|.++ ..+..+..+.|.++--+.+.... .+.+.+++.++++...+. -..|||+|--+..++- |
T Consensus 344 L~l~G~~L~~~Pl~eRr~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~a~~~------g~EGlv~K~~ds~Y~~--G 415 (579)
T 3l2p_A 344 IYFNDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKALDLADMITRVIQE------GLEGLVLKDVKGTYEP--G 415 (579)
T ss_dssp EEETTEECTTSCHHHHHHHHHHHCCCBTTTEEECCEEEECSHHHHHHHHHHHHHT------TCCCEEEEESSCCCCT--T
T ss_pred eccCCCccccCCHHHHHHHHHHHhhcCCCeEEEeeeEEcCCHHHHHHHHHHHHHh------CCCceEEecCcCCCCC--C
Confidence 87655332 24788999999887544433332 345778888888766432 4699999987755442 2
Q ss_pred CCCCCCCceEeecCC-------CceeeEEEEEEEEeec-CcceeeeE--EEEEEEEECC--EEEEEe-cCCCHHHHHhc
Q psy11422 312 FTSRAPRFALAYKFL-------SKEALTKIKAINIQIG-RTGIITPV--ALLKPVLIDG--ITITRA-TLHNESEIYRK 377 (687)
Q Consensus 312 ~ts~~PrwaiA~Kf~-------~~~~~T~v~~I~~qvG-RTG~iTPv--A~lePV~l~G--~tVsra-TLhN~~~i~~~ 377 (687)
. . .| +=+|-. .......|.+-.|--| |+|.++.. +..+|- +| ++|-++ |.++-+.++++
T Consensus 416 r---r-~W-lK~K~~y~~~g~~~~t~D~vViG~~~G~Gkr~g~~g~lllg~~d~~--~~~l~~vgkvgtGftd~~l~~l 487 (579)
T 3l2p_A 416 K---R-HW-LKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPG--SQKWCTVTKCAGGHDDATLARL 487 (579)
T ss_dssp C---E-EE-EEECTTTCC---CCEEEEEEEEEEECCCTTSCSSCCEEEEEEECTT--TSSEEEEEEECTTCCHHHHHHT
T ss_pred C---e-ee-EEEechhhccccccccccEEEEEEEeCCCCCCCceeEEEEEEEeCC--CCeEEEecCccCCCCHHHHHHH
Confidence 2 1 34 344433 1467778888888776 56666643 444430 23 345555 89999888886
No 42
>3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus}
Probab=97.84 E-value=0.00013 Score=78.04 Aligned_cols=143 Identities=22% Similarity=0.226 Sum_probs=98.1
Q ss_pred eeEEEEEccceeEEEEEEeCCEEEEEEecCCCCccchh---hhhhhhhccCCcccccCCCCceEEEEEEEEeehhhHHHH
Q psy11422 118 IEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENI---TTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194 (687)
Q Consensus 118 ~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDv---T~n~~~i~~iP~~l~~~~~~~~~evRGEi~~~~~~F~~~ 194 (687)
-.|++|+|+||-.+.+.|-+|+ +.|.||| |.+ + |..++.+... .+.. ++| .+.+-||++.+...|..
T Consensus 73 ~~~~veEKLDG~NVRi~~~dG~-ilA~TRg-G~i---cP~tT~r~~~~~~~--~f~~-~~P-~l~LdGEl~g~~npy~~- 142 (370)
T 3qwu_A 73 APFWVEEKVDGYNTRIFKYGDN-YYALSRG-GFI---CPFTTDRLPDLIDL--RILD-ENP-DLVICAEVAGPENPYIE- 142 (370)
T ss_dssp SCEEEEEECSSEEEEEEEETTE-EEEECTT-SCB---CHHHHHHHHHHCCC--HHHH-HCT-TEEEEEEEECTTCSSCS-
T ss_pred CcEEEEEeeCCeEEEEEEECCE-EEEEcCC-Ccc---cCcchhhhhhhcCc--hhhh-cCC-CeEEEEEEEcCCCCccc-
Confidence 3799999999999998889998 5899997 322 2 4444443322 2322 234 68999999987655420
Q ss_pred HHHHHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEecccccCCCCCCCHHHHHHHHHhcCCCCCCCceE--eC-
Q psy11422 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSV--LS- 271 (687)
Q Consensus 195 n~~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~~~~~~~~~~~~~~e~l~~L~~~Gf~~~~~~~~--~~- 271 (687)
+. +.. ...++.|++|++.+.+... +-+..+.+++|..+|++.++.... +.
T Consensus 143 ------------------------~s-~~y-~~~~i~F~VFDV~d~~~~~-~L~~~eR~~ll~~~~lp~V~ii~~~~~~~ 195 (370)
T 3qwu_A 143 ------------------------ES-PPY-VKEDVQLFVFDFMKKNEQG-FLSQEEKMELIEKYNLPHVEILGRFTASE 195 (370)
T ss_dssp ------------------------CC-CTT-CCSSCEEEEEEEEETTCCS-CCCHHHHHHHHHHHTCCBCCEEEEECSSH
T ss_pred ------------------------cC-Ccc-cccCceEEEEeCccccCCC-cCCHHHHHHHHHHCCCCCccEEEEeCCCC
Confidence 11 111 1357999999998643322 358899999999999998875443 34
Q ss_pred -CHHHHHHHHHHHHHhhcCCCCccceEEEEECC
Q psy11422 272 -GVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303 (687)
Q Consensus 272 -~~~ei~~~~~~~~~~r~~l~y~iDGiVikv~~ 303 (687)
+.+++.++++++.+. .--|||+|-.+
T Consensus 196 ~~~~~l~~~l~~l~~~------g~EGVVlK~~~ 222 (370)
T 3qwu_A 196 EGIKKIKEILKRFNEE------GREGVVFKEDS 222 (370)
T ss_dssp HHHHHHHHHHHHHHHT------TCCEEEEEESS
T ss_pred CCHHHHHHHHHHHHhC------CCcEEEEecCc
Confidence 466777788777654 34799999876
No 43
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=97.80 E-value=0.0002 Score=82.51 Aligned_cols=217 Identities=14% Similarity=0.104 Sum_probs=134.2
Q ss_pred eEEEEEccceeEEEEEEeCCEEEEEEecCCCCccchhhhhhhhhcc-CCcccccCCCCceEEEEEEEEeehh------hH
Q psy11422 119 EYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHK-IPLVLNIKYPPELLEVRCEVLIYKK------DF 191 (687)
Q Consensus 119 ~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~-iP~~l~~~~~~~~~evRGEi~~~~~------~F 191 (687)
.|++|+|+||.-+.+.+.+|. ++..|| .|+|+|+....+.. +...++ ...+.+-||+++-.. .|
T Consensus 274 ~~~~E~K~DG~R~qi~~~g~~-v~l~SR----~g~~~t~~fP~l~~~~~~~l~----~~~~iLDGElv~~d~~~g~~l~F 344 (621)
T 2hiv_A 274 NAIVDYKYDGERAQIHKKEDK-IFIFSR----RLENITSQYPDVVDYVSKYIE----GKEFIIEGEIVAIDPESGEMRPF 344 (621)
T ss_dssp CEEEEEECSSEEEEEEEETTE-EEEECT----TCCBCGGGCHHHHHHHHHHBC----CSSEEEEEEEEEBCTTTCCBCCT
T ss_pred cEEEEEEEcceeEEEEEcCCE-EEEEcC----CCcCcHhhhhhHHHHHHHhCC----CcCeEEeEEEEEeecCCCCcCCH
Confidence 699999999999999887776 699999 48899976554321 111221 146899999999641 57
Q ss_pred HHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEecccccCCCC-CCCHHHHHHHHHhcCCCCCCCc---
Q psy11422 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM-PSSHSELLNWYQKIGLSICGEY--- 267 (687)
Q Consensus 192 ~~~n~~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~~~~~~~~~-~~~~~e~l~~L~~~Gf~~~~~~--- 267 (687)
+.+...+.+ . . +. ......++.|++|++...+|.++ ..+..+..+.|.++--+. ...
T Consensus 345 ~~L~~r~~~--~----~----~~--------~~~~~~~v~~~vFDlL~l~G~~l~~~pl~eRr~~L~~~~~~~-~~i~~~ 405 (621)
T 2hiv_A 345 QELMHRKRK--S----D----IY--------EAIKEYPVNVFLFDLMYYEDVDYTTKPLEARRKLLESIVKPN-DYVKIA 405 (621)
T ss_dssp HHHHHHHHC--S----C----HH--------HHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-SSEEEC
T ss_pred HHHhhhccc--c----c----hh--------hhcccCceEEEEEeccccCCCccccCCHHHHHHHHHHHhCcC-CcEEEe
Confidence 766443110 0 0 00 01123479999999987655332 257888889998873221 221
Q ss_pred --eEeCCHHHHHHHHHHHHHhhcCCCCccceEEEEEC--ChhhhhhhCCCCCCCCceEeecCCC-----ceeeEEEEEEE
Q psy11422 268 --SVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKIN--CLSTQKKLGFTSRAPRFALAYKFLS-----KEALTKIKAIN 338 (687)
Q Consensus 268 --~~~~~~~ei~~~~~~~~~~r~~l~y~iDGiVikv~--~~~~~~~lG~ts~~PrwaiA~Kf~~-----~~~~T~v~~I~ 338 (687)
..+.+.+++.++++...+ -..+|+|+|-- +..++. | .+...| +=+|-.. +.....|.+..
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~------~g~EGlv~K~~~~ds~Y~~--G--~Rs~~W-lK~K~~~~~~~~dt~D~vViG~~ 474 (621)
T 2hiv_A 406 HHIQANNVEDLKSFFYRAIS------EGGEGVMVKAIGKDAIYQA--G--ARGWLW-IKLKRDYQSEMADTVDLVVVGGF 474 (621)
T ss_dssp CEEEESSHHHHHHHHHHHHH------TTCCEEEEECCSTTCCCCT--T--CEEEEE-EEEETTCTTSSCEEEEEEEEEEE
T ss_pred eeEEeCCHHHHHHHHHHHHh------cCCceEEEEecCCCCCccC--C--CcCCCe-EEEechhccCcCceeEEEEEEEE
Confidence 235688899998877653 34699999986 433331 2 123335 4555444 47888998888
Q ss_pred EeecC-cceeeeEE--EEEEEEECCE--EEEE-ecCCCHHHHHh
Q psy11422 339 IQIGR-TGIITPVA--LLKPVLIDGI--TITR-ATLHNESEIYR 376 (687)
Q Consensus 339 ~qvGR-TG~iTPvA--~lePV~l~G~--tVsr-aTLhN~~~i~~ 376 (687)
|--|| +|.++..- ..+|= +|. +|.+ .|..+-+..++
T Consensus 475 ~g~Gkr~g~~g~lllg~~d~~--~~~l~~vgkvgtGftd~~~~~ 516 (621)
T 2hiv_A 475 YGKGKRGGKISSLLMAAYNPK--TDSFESVCKVASGFSDEQLDE 516 (621)
T ss_dssp ECSGGGTTSEEEEEEEEEETT--TTEEEEEEEECBSCCHHHHHH
T ss_pred cCCCCCCCcccceEEEEEeCC--CCeEEEEeeeCCCCCHHHHHH
Confidence 87764 56665432 33320 133 3334 46777666654
No 44
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=97.78 E-value=0.00035 Score=81.31 Aligned_cols=220 Identities=15% Similarity=0.134 Sum_probs=132.6
Q ss_pred eeEEEEEccceeEEEEEE-eCCEEEEEEecCCCCccchhhhhhhhhcc-CCcccccCCCCceEEEEEEEEeeh------h
Q psy11422 118 IEYIAELKFDGIAVNLRY-EYGYLKQASTRGDGNIGENITTNIHIIHK-IPLVLNIKYPPELLEVRCEVLIYK------K 189 (687)
Q Consensus 118 ~~~~~e~KiDGlsi~l~Y-~~G~l~~a~TRGdG~~GeDvT~n~~~i~~-iP~~l~~~~~~~~~evRGEi~~~~------~ 189 (687)
..|++|+|+||.-+.+.+ .+|. ++..|| .|+|+|+....+.. ++..+.. . ...+.+-||+++-. .
T Consensus 330 ~~~~~E~K~DG~R~qih~~~~g~-v~l~SR----~g~d~t~~fPel~~~l~~~~~~-~-~~~~ILDGElV~~d~~~g~~~ 402 (688)
T 1x9n_A 330 AAFTCEYKYDGQRAQIHALEGGE-VKIFSR----NQEDNTGKYPDIISRIPKIKLP-S-VTSFILDTEAVAWDREKKQIQ 402 (688)
T ss_dssp SCEEEEEEESSEEEEEEECTTSC-EEEECT----TSCBCTTTCHHHHHTSGGGBCT-T-CCCEEEEEEEEEECTTTCSBC
T ss_pred CeEEEEEccccEeEEEEEcCCCe-EEEEeC----CCCcccccchHHHHHHHHhhcc-C-CCCeEEeEEEEEEeCCCCCcC
Confidence 369999999999999988 4665 689999 68899976654432 3322211 0 23689999999943 2
Q ss_pred hHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEecccccCCCC-CCCHHHHHHHHHhcCCCCCCCce
Q psy11422 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM-PSSHSELLNWYQKIGLSICGEYS 268 (687)
Q Consensus 190 ~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~~~~~~~~~-~~~~~e~l~~L~~~Gf~~~~~~~ 268 (687)
.|+.+... . |. .-+......++.|++|++...+|.++ .....++.+.|.++--+......
T Consensus 403 ~F~~L~~r----~-------r~--------~~~~~~~~~~v~~~vFDlL~l~G~~l~~~Pl~eRr~~L~~~~~~~~~~i~ 463 (688)
T 1x9n_A 403 PFQVLTTR----K-------RK--------EVDASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFV 463 (688)
T ss_dssp CHHHHTTS----C-------SS--------CCCGGGCCSEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCBTTTEE
T ss_pred CHHHHHHH----h-------hc--------ccchhhcccceEEEEEechhhcCCccccCCHHHHHHHHHHhhccCCCcEE
Confidence 57654211 0 00 00111124579999999987655332 25788999999887433322222
Q ss_pred -----EeCCHHHHHHHHHHHHHhhcCCCCccceEEEEEC--ChhhhhhhCCCCCCCCceEeecCC-----CceeeEEEEE
Q psy11422 269 -----VLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKIN--CLSTQKKLGFTSRAPRFALAYKFL-----SKEALTKIKA 336 (687)
Q Consensus 269 -----~~~~~~ei~~~~~~~~~~r~~l~y~iDGiVikv~--~~~~~~~lG~ts~~PrwaiA~Kf~-----~~~~~T~v~~ 336 (687)
.+.+.+++.++++...+ -..+|+|+|-- +..++- | .+...| +=+|-. ..+....|.+
T Consensus 464 ~~~~~~~~~~~~~~~~~~~a~~------~g~EGlV~K~~~~ds~Y~~--G--kRs~~W-lK~K~~y~~~~~dt~D~vVIG 532 (688)
T 1x9n_A 464 FATSLDTKDIEQIAEFLEQSVK------DSCEGLMVKTLDVDATYEI--A--KRSHNW-LKLKKDYLDGVGDTLDLVVIG 532 (688)
T ss_dssp ECCEECCCCHHHHHHHHHHHHH------TSEEEEEEEESSSSCSSCT--T--TCSEEE-EEEEHHHHHSSCEEEEEEEEE
T ss_pred EEeeEecCCHHHHHHHHHHHHh------cCCceeEEeecccCCCCCC--C--CcCchH-heeehhhhccccccccEEEEE
Confidence 24578888888876643 34699999986 433321 1 123345 444543 1466778888
Q ss_pred EEEeecC-cceeeeEE--EEEEEEECCE--EEEE-ecCCCHHHHHh
Q psy11422 337 INIQIGR-TGIITPVA--LLKPVLIDGI--TITR-ATLHNESEIYR 376 (687)
Q Consensus 337 I~~qvGR-TG~iTPvA--~lePV~l~G~--tVsr-aTLhN~~~i~~ 376 (687)
..|--|| +|.++..- ..+|- +|. +|.+ .|.++-+..++
T Consensus 533 ~~~g~Gkr~g~~gslllg~~d~~--~~~l~~vgkvgtGftd~~~~~ 576 (688)
T 1x9n_A 533 AYLGRGKRAGRYGGFLLASYDED--SEELQAICKLGTGFSDEELEE 576 (688)
T ss_dssp EEEBCTTSBTSEEEEEEEEEETT--TTEEEEEEEECCSCCHHHHHH
T ss_pred EEeCCCCCCCceeeEEEEEEeCC--CCeEEEEeeeCCCCCHHHHHH
Confidence 8887665 56555432 22220 132 3444 35677766665
No 45
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=97.76 E-value=3.9e-05 Score=81.73 Aligned_cols=100 Identities=15% Similarity=0.276 Sum_probs=76.2
Q ss_pred cccC-CCCHHHHHHHHHCCCCCChHHHhc----CChhhhhcccCccHHHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHH
Q psy11422 460 MNII-GLGKKMIEKLVNANIVVTAVDLYK----INFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGET 534 (687)
Q Consensus 460 l~I~-GLG~k~i~~L~~~g~I~~i~DL~~----L~~~~L~~l~gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~ 534 (687)
|-++ |+|..|.+.|...- .++..+-. ...++|..++|+|+|.+..+..++ ..| -.|||||+.
T Consensus 413 LAvkfG~g~eTAe~L~~~a--gr~l~leqi~rdrEvgkL~SVpGikek~sktL~eqe---------amL--tAIaGIGp~ 479 (685)
T 4gfj_A 413 LTKKEGVGRKTAERLLRAF--GNPERVKQLAREFEIEKLASVEGVGERVLRSLVPGY---------ASL--ISIRGIDRE 479 (685)
T ss_dssp HHTSTTCCHHHHHHHHHHH--SSHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHSTTH---------HHH--HTSTTCCHH
T ss_pred hhhhcCCchHHHHHHHHHh--cchhhhhhhhhhhhhhcccccccchhhhhcccccce---------eee--eccCCCCHH
Confidence 3444 88888888775531 12222222 456789999999999887776651 111 379999999
Q ss_pred HHHHHHhhcCChHHHHhcCHHHHhcCCCCCHHHHHHHHH
Q psy11422 535 TAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIK 573 (687)
Q Consensus 535 ~Ak~La~~f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ 573 (687)
+|++|+++|||++.++.|+.++|.. +|||++.|..|..
T Consensus 480 tAeRLLEkFGSVe~Vm~AteDELRe-dGIGekqarrI~g 517 (685)
T 4gfj_A 480 RAERLLKKYGGYSKVREAGVEELRE-DGLTDAQIRELKG 517 (685)
T ss_dssp HHHHHHHHHTSHHHHHHSCHHHHHH-TTCCHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHhCCHHHHHH-ccccHHHHHHHhh
Confidence 9999999999999999999999977 9999999988764
No 46
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=97.70 E-value=7.4e-05 Score=76.90 Aligned_cols=78 Identities=13% Similarity=0.122 Sum_probs=65.4
Q ss_pred CCCccCCeEEEEEcCCCc----------------------------CCHHHHHHHHHhcCCEEccccccc------ccEE
Q psy11422 603 NKNYLKEKIFVFTGSLYA----------------------------FKRNEAIILIENLGGKVVNFISKN------TNYL 648 (687)
Q Consensus 603 ~~~~l~g~~vv~TG~l~~----------------------------~~R~e~~~~i~~~Gg~v~~sVsk~------t~~L 648 (687)
..+.|.|+.|++|+.... ++|.+++++|+++||+|..+++.. +.+|
T Consensus 12 ~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t~L 91 (259)
T 1kzy_C 12 NKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQCLL 91 (259)
T ss_dssp STTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCEEEE
T ss_pred CCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCCeEE
Confidence 456899999999999753 588999999999999999998865 5678
Q ss_pred EEcCC-CCccHHHHHHcCCeEEeHHHHHHHHhc
Q psy11422 649 VKGQK-PGKKLEKAIKLNIKILDEKNFVKIVKG 680 (687)
Q Consensus 649 V~G~~-~g~Kl~kA~~lgI~Ii~E~~f~~~l~~ 680 (687)
|+... -+.|...|...|++||+.+++.+.++.
T Consensus 92 Ia~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~ 124 (259)
T 1kzy_C 92 IADQHCRTRKYFLCLASGIPCVSHVWVHDSCHA 124 (259)
T ss_dssp EESSCCCSHHHHHHHHHTCCEEETHHHHHHHHH
T ss_pred EcCCCCCcHHHHHHHhcCCCCccHHHHHHHHHc
Confidence 88763 347999999999999999999998753
No 47
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=97.66 E-value=6.1e-05 Score=75.64 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=64.5
Q ss_pred CccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCCCC-ccHHHHHHcCCeEEeHHHHHHHHhc
Q psy11422 605 NYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPG-KKLEKAIKLNIKILDEKNFVKIVKG 680 (687)
Q Consensus 605 ~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g-~Kl~kA~~lgI~Ii~E~~f~~~l~~ 680 (687)
.|+.|..|||||.- .-.++++.++++.+||.+.+++ .++++||++.... .|+..|...|++|++.+++.+.++.
T Consensus 12 ~~~~~~~i~~SG~~-~~~~~~l~~~i~~lGg~v~~~~-~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~~c~~~ 86 (219)
T 3sqd_A 12 TPELTPFVLFTGFE-PVQVQQYIKKLYILGGEVAESA-QKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRC 86 (219)
T ss_dssp CGGGCCEEEECSCC-HHHHHHHHHHHHHTTCEECSSG-GGCSEEECSSCCCCHHHHHHTTTCSEEECHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCC-hHHHHHHHHHHHHCCCEEeCCC-CCceEEEECCCCCCHHHHHHHHcCCCEecHHHHHHHHHc
Confidence 37899999999954 3467899999999999999997 7999999987555 5999999999999999999988753
No 48
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=97.60 E-value=0.00012 Score=74.57 Aligned_cols=75 Identities=19% Similarity=0.306 Sum_probs=62.6
Q ss_pred ccCCeEEEEEcC--CCcCCHHHHHHHHHhcCCEEccc-------ccc-----------------c--ccEEEEcCCC-Cc
Q psy11422 606 YLKEKIFVFTGS--LYAFKRNEAIILIENLGGKVVNF-------ISK-----------------N--TNYLVKGQKP-GK 656 (687)
Q Consensus 606 ~l~g~~vv~TG~--l~~~~R~e~~~~i~~~Gg~v~~s-------Vsk-----------------~--t~~LV~G~~~-g~ 656 (687)
.|+|+.|||||. +...+|.+++++|+++||+|... .+. . .++||+.... ..
T Consensus 2 lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt~ 81 (241)
T 2vxb_A 2 IFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRKV 81 (241)
T ss_dssp TTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCCH
T ss_pred CCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCcH
Confidence 689999999999 76789999999999999999886 111 1 2777777644 48
Q ss_pred cHHHHHHcCCeEEeHHHHHHHHhc
Q psy11422 657 KLEKAIKLNIKILDEKNFVKIVKG 680 (687)
Q Consensus 657 Kl~kA~~lgI~Ii~E~~f~~~l~~ 680 (687)
|..+|..+||+||+.+++.+.++.
T Consensus 82 K~~~ala~gipiV~~~Wi~dc~~~ 105 (241)
T 2vxb_A 82 KYLEALAFNIPCVHPQFIKQCLKM 105 (241)
T ss_dssp HHHHHHHHTCCEECTHHHHHHHHH
T ss_pred HHHHHHHcCCCEecHHHHHHHHHc
Confidence 999999999999999999998853
No 49
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=97.58 E-value=0.00028 Score=62.59 Aligned_cols=77 Identities=12% Similarity=0.307 Sum_probs=68.3
Q ss_pred CCccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCCCCccHHHHHHc--CCeEEeHHHHHHHHhc
Q psy11422 604 KNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKL--NIKILDEKNFVKIVKG 680 (687)
Q Consensus 604 ~~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g~Kl~kA~~l--gI~Ii~E~~f~~~l~~ 680 (687)
.+.|+|++|+|.|....-.|..+..+|.+.||.++...+.+++++|+....+.|++.|.+. ++++++.+++.+.+..
T Consensus 5 pd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~~~~~a~~~~p~~~~V~P~WI~~Ci~~ 83 (104)
T 3pc6_A 5 PDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSCNEK 83 (104)
T ss_dssp CCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCHHHHHHHTTCTTCEEECHHHHHHHHHH
T ss_pred chhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCChhHHHHhhhCCCCeEEccHHHHHHHhc
Confidence 3578999999999984347999999999999999999999999999998877899988765 7999999999998864
No 50
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=97.54 E-value=0.0001 Score=72.46 Aligned_cols=73 Identities=12% Similarity=0.183 Sum_probs=58.3
Q ss_pred hhhhcccCccHHHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHHHHHHHHhhcCC---hHHHHhcCHHHHhcCCCCCHHH
Q psy11422 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN---LECMFKATEEQLLNIPKIGSTT 567 (687)
Q Consensus 491 ~~L~~l~gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~~Ak~La~~f~s---ld~l~~As~eeL~~I~GIG~~~ 567 (687)
++-..|-||..+....+. +.| ..|+|||+++|..|+++|++ .+++..++.++|.++||||+++
T Consensus 54 eda~~l~gf~~~~ek~~f------------~~L--~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~ 119 (191)
T 1ixr_A 54 EEGLSLYGFPDEENLALF------------ELL--LSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRL 119 (191)
T ss_dssp SSCCCEEEESSHHHHHHH------------HHH--HSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHH
T ss_pred hhhHHhhccCCHHHHHHH------------HHH--hcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHH
Confidence 333347777766444333 222 35999999999999999998 7889999999999999999999
Q ss_pred HHHHHHHHcc
Q psy11422 568 VKAFIKFINQ 577 (687)
Q Consensus 568 A~sI~~ff~~ 577 (687)
|+.|...|++
T Consensus 120 A~rI~~~lk~ 129 (191)
T 1ixr_A 120 AERIALELKG 129 (191)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999888754
No 51
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B*
Probab=97.45 E-value=0.00077 Score=71.73 Aligned_cols=151 Identities=13% Similarity=0.017 Sum_probs=91.5
Q ss_pred eEEEEEccceeEEEEEEe---CCEEEEEEecCCCCccchhhhhhhhhccCCcccccCCCCceEEEEEEEEeehhhHHHHH
Q psy11422 119 EYIAELKFDGIAVNLRYE---YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195 (687)
Q Consensus 119 ~~~~e~KiDGlsi~l~Y~---~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~l~~~~~~~~~evRGEi~~~~~~F~~~n 195 (687)
.|.+|+|.||+-+.+... ++.-+.+.||+ |+++|.-. +.++.. .+....+-||+++...
T Consensus 76 ~y~ve~K~DG~R~ll~~~~~~g~g~v~L~sR~----~~~~t~~f---p~~~~~-----~~~~~vLDGElv~~~~------ 137 (330)
T 1ckm_A 76 KYVVSEKTDGIRFMMFFTRVFGFKVCTIIDRA----MTVYLLPF---KNIPRV-----LFQGSIFDGELCVDIV------ 137 (330)
T ss_dssp CEEEEEEECSEEEEEEEEEETTEEEEEEECTT----CCEEECCC---SCCCTT-----GGGCEEEEEEEEEETT------
T ss_pred CEEEEECcceEEEEEEEEecCCCCEEEEEeCC----CCEEeccC---hhhhhc-----cCCCeeEEEEEEEEcC------
Confidence 699999999999988776 22347899996 78888632 223211 2346889999998431
Q ss_pred HHHHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEecccccCCCC-CCCHHHHHHHHHhc--CC---CCCCC-ce
Q psy11422 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM-PSSHSELLNWYQKI--GL---SICGE-YS 268 (687)
Q Consensus 196 ~~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~~~~~~~~~-~~~~~e~l~~L~~~--Gf---~~~~~-~~ 268 (687)
.| .+.|++|++...+|.++ .....++++.|+++ +. ...+. ..
T Consensus 138 ------------------~~-------------~~~f~vFDlL~~~G~dl~~~pl~eRr~~L~~~l~~~~~~~~~~~~i~ 186 (330)
T 1ckm_A 138 ------------------EK-------------KFAFVLFDAVVVSGVTVSQMDLASRFFAMKRSLKEFKNVPEDPAILR 186 (330)
T ss_dssp ------------------TT-------------EEEEEEEEEEEETTEECTTSCHHHHHHHHHHHHTTCCCCTTSSSEEE
T ss_pred ------------------CC-------------eEEEEEEeeeeeCCcccccCCHHHHHHHHHHHHhhhcccCCCCeEEE
Confidence 01 17899999987665432 24677888888764 21 11111 11
Q ss_pred EeC--CHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCC
Q psy11422 269 VLS--GVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFL 326 (687)
Q Consensus 269 ~~~--~~~ei~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~ 326 (687)
... .. ++.++++++..... ..|..||||+|-.+..++- | +...| +-||.+
T Consensus 187 ~~~~~~~-~~~~~~~~~~~~~~-~~yg~EGlI~K~~dspY~~--G---r~~~~-lKwK~~ 238 (330)
T 1ckm_A 187 YKEWIPL-EHPTIIKDHLKKAN-AIYHTDGLIIMSVDEPVIY--G---RNFNL-FKLKPG 238 (330)
T ss_dssp ECCCEET-TCHHHHHHHHHHHH-HHSCEEEEEEEESSSCCCC--E---EEEEE-EEECST
T ss_pred EEEEEeh-hHHHHHHHHHHHHh-ccCCCceEEEeeCCCcccC--C---CccCe-EEEEeC
Confidence 111 11 34444432222111 1468999999998755542 2 33456 777764
No 52
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=97.44 E-value=0.00012 Score=72.76 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=59.0
Q ss_pred hhhhcccCccHHHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHHHHHHHHhhcCC---hHHHHhcCHHHHhcCCCCCHHH
Q psy11422 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN---LECMFKATEEQLLNIPKIGSTT 567 (687)
Q Consensus 491 ~~L~~l~gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~~Ak~La~~f~s---ld~l~~As~eeL~~I~GIG~~~ 567 (687)
++-..|-||..+....+.. .| ..|+|||+++|..|+.+|++ .+++..++.++|.++||||+++
T Consensus 55 eda~~l~gf~~~~ek~~f~------------~L--~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~ 120 (203)
T 1cuk_A 55 EDAQLLYGFNNKQERTLFK------------EL--IKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 (203)
T ss_dssp TTEEEEEEESSHHHHHHHH------------HH--HHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHH
T ss_pred ehhhhhhccCCHHHHHHHH------------HH--hcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHH
Confidence 3334477888776654443 22 23999999999999999999 8899999999999999999999
Q ss_pred HHHHHHHHcc
Q psy11422 568 VKAFIKFINQ 577 (687)
Q Consensus 568 A~sI~~ff~~ 577 (687)
|+.|...|++
T Consensus 121 A~rI~~elk~ 130 (203)
T 1cuk_A 121 AERLIVEMKD 130 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887753
No 53
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=97.38 E-value=0.00029 Score=70.47 Aligned_cols=74 Identities=12% Similarity=0.007 Sum_probs=65.1
Q ss_pred ccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCC------CCccHHHHHHcCCeEEeHHHHHHHHh
Q psy11422 606 YLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQK------PGKKLEKAIKLNIKILDEKNFVKIVK 679 (687)
Q Consensus 606 ~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~------~g~Kl~kA~~lgI~Ii~E~~f~~~l~ 679 (687)
.+.+..||+||... ..|+.++++++.+||.+.+.++.++++||++.. -+.|+..|...|++|++.+++.+.++
T Consensus 4 ~~~~~~i~~sg~~~-~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~~~ 82 (229)
T 1l0b_A 4 AERDISMVVSGLTP-KEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKSIQ 82 (229)
T ss_dssp CCCCCEEEEESCCH-HHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHHHHT
T ss_pred CCCCeEEEEcCCCH-HHHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHHHHHHHHH
Confidence 46788999999754 368899999999999999999999999999975 34799999999999999999998875
Q ss_pred c
Q psy11422 680 G 680 (687)
Q Consensus 680 ~ 680 (687)
.
T Consensus 83 ~ 83 (229)
T 1l0b_A 83 E 83 (229)
T ss_dssp T
T ss_pred C
Confidence 3
No 54
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=97.35 E-value=0.0002 Score=76.82 Aligned_cols=52 Identities=21% Similarity=0.308 Sum_probs=48.8
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHhcCHHHHhcCCCCCHHHHHHHHHHHcch
Q psy11422 527 GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQP 578 (687)
Q Consensus 527 GIp~vG~~~Ak~La~~f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ff~~~ 578 (687)
.||.+|++.|++|.++|++++++.+|+.+||.+++|||++.|..|++.+..-
T Consensus 319 ~IPrl~~~iae~Lv~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~IregL~r~ 370 (377)
T 3c1y_A 319 TVARIPLSIGYNVVRMFKTLDQISKASVEDLKKVEGIGEKRARAISESISSL 370 (377)
T ss_dssp HTSCCCHHHHHHHHHHHCSHHHHTTCCHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHhCCHHHHHhCCHHHHHhccCccHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999887543
No 55
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=97.32 E-value=0.00057 Score=70.41 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=63.9
Q ss_pred CCCccCCeEEEE-EcCCCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCCCCccHHHHHHcC-CeEEeHHHHHHHHhc
Q psy11422 603 NKNYLKEKIFVF-TGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLN-IKILDEKNFVKIVKG 680 (687)
Q Consensus 603 ~~~~l~g~~vv~-TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g~Kl~kA~~lg-I~Ii~E~~f~~~l~~ 680 (687)
.++.|+|+.||+ +|. ...+|++++.+|.++||++..+.++.|.++|++. .+.|.+.|.+.| ++||+.+++.+.++.
T Consensus 7 ~s~lF~G~~f~V~sg~-~~~~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~-~~~k~~~~~~~g~~~IV~p~Wv~Dci~~ 84 (263)
T 3ii6_X 7 ISNIFEDVEFCVMSGT-DSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGS-ENIRVKNIILSNKHDVVKPAWLLECFKT 84 (263)
T ss_dssp CCCTTTTCEEEECCCC---CCHHHHHHHHHHTTCEECSSCCTTEEEEECSS-CCHHHHHHHHSCSCCEECHHHHHHHHHH
T ss_pred CcccCCCeEEEEEcCC-CCCCHHHHHHHHHHcCCEEEecCCCCEEEEEeCC-CCHHHHHHHhcCCCCEeehHHHHHHHhc
Confidence 456899999998 564 3469999999999999999999988888778765 448889999987 999999999998753
No 56
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=97.32 E-value=0.00085 Score=61.81 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=63.5
Q ss_pred CCccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCCCCccHHHHHH---cCCeEEeHHHHHHHHhc
Q psy11422 604 KNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIK---LNIKILDEKNFVKIVKG 680 (687)
Q Consensus 604 ~~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g~Kl~kA~~---lgI~Ii~E~~f~~~l~~ 680 (687)
...|.|.+|+|.|.-. ..+..++.+++.+||++...++..+++||+++. ..+++++.. .+++|++.+++.+.+..
T Consensus 38 ~~lF~g~~i~i~G~~~-~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~-~~~~~~~~~~~~~~~~iV~~~Wv~dsi~~ 115 (132)
T 1wf6_A 38 EDLLDGCRIYLCGFSG-RKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDY-DDELKQFWNKSAHRPHVVGAKWLLECFSK 115 (132)
T ss_dssp TTTTTTCEEEEESCCS-HHHHHHHHHHHHTTCEEESSCCSSCCEEEESSC-CSHHHHHHHHSCCCCCEEEHHHHHHHHHH
T ss_pred ccccCCEEEEEECCCh-HHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCc-hHHHHHHHHhhCCCCeEechHHHHHHHHc
Confidence 4679999999999754 588999999999999999999999999999864 456666543 47999999999998753
No 57
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=97.28 E-value=0.00034 Score=68.95 Aligned_cols=72 Identities=14% Similarity=-0.010 Sum_probs=62.9
Q ss_pred CCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCCC------CccHHHHHHcCCeEEeHHHHHHHHhc
Q psy11422 608 KEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKP------GKKLEKAIKLNIKILDEKNFVKIVKG 680 (687)
Q Consensus 608 ~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~------g~Kl~kA~~lgI~Ii~E~~f~~~l~~ 680 (687)
.+..||+||... ..|+.+.++++.+||.+.+.++.++++||++... +.|+..|...|++|++.+++.+.++.
T Consensus 3 ~~~~~~~sg~~~-~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~~~~~~ 80 (214)
T 1t15_A 3 KRMSMVVSGLTP-EEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKE 80 (214)
T ss_dssp -CCEEEEESCCH-HHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHHT
T ss_pred CcEEEEECCCCH-HHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCHHHHHHHHHC
Confidence 477899999654 4788999999999999999999999999999753 47989999999999999999988753
No 58
>3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens}
Probab=97.23 E-value=0.00068 Score=63.16 Aligned_cols=117 Identities=12% Similarity=0.134 Sum_probs=70.7
Q ss_pred EEEEEccceeEEEEEEeCCEEEEEEecCCCCccchhhhhhhhhcc-------CCcccccCCCCceEEEEEEEEeehhhHH
Q psy11422 120 YIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHK-------IPLVLNIKYPPELLEVRCEVLIYKKDFI 192 (687)
Q Consensus 120 ~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~-------iP~~l~~~~~~~~~evRGEi~~~~~~F~ 192 (687)
|++|+|+||.-+.+.+.+|. ++..|| -|+|+|+....+.. |...+.. ....+.+-||++.-...
T Consensus 1 f~~E~K~DG~R~q~~~~g~~-v~l~SR----~g~d~t~~fPel~~~~~l~~~i~~~~~~--~~~~~iLDGEiv~~d~~-- 71 (139)
T 3vnn_A 1 FYIETKLDGERMQMHKDGDV-YKYFSR----NGYNYTDQFGASPTEGSLTPFIHNAFKA--DIQICILDGEMMAYNPN-- 71 (139)
T ss_dssp CCCCCCCCCEEEEEEEETTE-EEEECS----SCCBCTTTSCSSTTC--CCSGGGSCCCT--TCCEEEEEEEEEEEETT--
T ss_pred CEEEEEECeEEEEEEEECCE-EEEEeC----CCCCchhhccchhhhcchhHHHHHHHhc--cCCceEeeeEEEEecCC--
Confidence 57899999999999887776 799999 58999987644321 2222221 13579999999995321
Q ss_pred HHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEecccccCCCC-CCCHHHHHHHHHhc
Q psy11422 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM-PSSHSELLNWYQKI 259 (687)
Q Consensus 193 ~~n~~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~~~~~~~~~-~~~~~e~l~~L~~~ 259 (687)
...|. ++... ++.+........++.|++|++...+|.++ ..+..+..+.|.++
T Consensus 72 ----------~~~f~-~~~~~---~~~~~~~~~~~~~~~~~vFDlL~l~G~~L~~~pl~eRr~~L~~l 125 (139)
T 3vnn_A 72 ----------TQTFM-QKGTK---FDIKRMVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSI 125 (139)
T ss_dssp ----------TTEEC-CC----------------CCEEEEEEEEEEEETTEECSSSCHHHHHHHHHHH
T ss_pred ----------CCCHH-HHHhh---hhhhhhhhccCceEEEEEEEEEeECCcCcccCCHHHHHHHHHHH
Confidence 01122 11000 01111111123478999999987665432 24688888888776
No 59
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=97.18 E-value=0.00053 Score=67.86 Aligned_cols=71 Identities=13% Similarity=-0.049 Sum_probs=62.4
Q ss_pred CeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccccEEEEcC---CCCccHHHHHHcCCeEEeHHHHHHHHhc
Q psy11422 609 EKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQ---KPGKKLEKAIKLNIKILDEKNFVKIVKG 680 (687)
Q Consensus 609 g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~---~~g~Kl~kA~~lgI~Ii~E~~f~~~l~~ 680 (687)
|..||+||... -.|+.+.++++.+||.+.+.++.++++||++. ..+.|+..|...|++|++.+++.+.++.
T Consensus 2 ~~vi~~sg~~~-~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~ 75 (210)
T 2nte_A 2 PLVLIGSGLSS-EQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRR 75 (210)
T ss_dssp CCEEEESSCCH-HHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHHHH
T ss_pred CEEEEECCCCH-HHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHHHHhcCCEEecHHHHHHHHHc
Confidence 56899999654 47889999999999999999999999999987 3358999999999999999999987753
No 60
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=97.18 E-value=0.00017 Score=60.37 Aligned_cols=53 Identities=19% Similarity=0.284 Sum_probs=47.5
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHH
Q psy11422 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQ 512 (687)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie 512 (687)
....|+|+|++++.+|++. ..++.+|+..+.++|..++|+|++.|+.|++.+.
T Consensus 25 ~L~~I~gIG~~~A~~Ll~~--fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~~ 77 (78)
T 1kft_A 25 SLETIEGVGPKRRQMLLKY--MGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 77 (78)
T ss_dssp GGGGCTTCSSSHHHHHHHH--HSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred HHhcCCCCCHHHHHHHHHH--cCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHh
Confidence 4668999999999999997 3589999999999999999999999999998763
No 61
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=97.03 E-value=0.00069 Score=55.63 Aligned_cols=56 Identities=11% Similarity=0.275 Sum_probs=49.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHHccc
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKL 516 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~sk~ 516 (687)
...|+|+|++++..|++. ..++.+|+..+.++|..++|+|++.|+.|+..++...+
T Consensus 16 L~~i~giG~~~a~~Ll~~--fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~~~~ 71 (75)
T 1x2i_A 16 VEGLPHVSATLARRLLKH--FGSVERVFTASVAELMKVEGIGEKIAKEIRRVITAPYI 71 (75)
T ss_dssp HTTSTTCCHHHHHHHHHH--HCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHSCCC
T ss_pred HcCCCCCCHHHHHHHHHH--cCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHhCccc
Confidence 457999999999999995 36789999999999999999999999999999876543
No 62
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=97.02 E-value=0.00091 Score=55.02 Aligned_cols=56 Identities=18% Similarity=0.367 Sum_probs=50.3
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHH
Q psy11422 456 SRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQ 512 (687)
Q Consensus 456 sr~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie 512 (687)
+.+..+++|+|+.++.+|.++|+ .|+.||-.++.++|..+.|+++..|++|+..-.
T Consensus 6 ~~~l~~L~Gi~~~~~~kL~e~Gi-~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr 61 (70)
T 1wcn_A 6 ADDLLNLEGVDRDLAFKLAARGV-CTLEDLAEQGIDDLADIEGLTDEKAGALIMAAR 61 (70)
T ss_dssp CHHHHSSTTCCHHHHHHHHTTTC-CSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred hhHHHHcCCCCHHHHHHHHHcCC-CcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHH
Confidence 34567899999999999999995 899999999999999999999999999997654
No 63
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=96.99 E-value=9.9e-05 Score=75.10 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=0.0
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHHccc
Q psy11422 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKL 516 (687)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~sk~ 516 (687)
..++|+|+||+++.+|++.| +.++.+|...+.++|..++|||+|+|++|+..++....
T Consensus 16 ~L~~IpGIGpk~a~~Ll~~g-f~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~~~~~ 73 (241)
T 1vq8_Y 16 ELTDISGVGPSKAESLREAG-FESVEDVRGADQSALADVSGIGNALAARIKADVGGLEV 73 (241)
T ss_dssp -----------------------------------------------------------
T ss_pred HHhcCCCCCHHHHHHHHHcC-CCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHHHHHh
Confidence 36789999999999999995 58999998889999999999999999999999875444
No 64
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=96.98 E-value=0.00087 Score=57.39 Aligned_cols=52 Identities=10% Similarity=0.092 Sum_probs=47.7
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 460 MNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 460 l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
..|+|+|++++.+|++.- .++.+++..+.++|..++|+|++.|+.|+..++.
T Consensus 22 ~~IpgIG~~~A~~Ll~~f--gsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 22 TTVKSVNKTDSQTLLTTF--GSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp TTSSSCCHHHHHHHHHHT--CBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred HcCCCCCHHHHHHHHHHC--CCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 489999999999999863 5789999999999999999999999999999975
No 65
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=96.97 E-value=0.0011 Score=65.65 Aligned_cols=71 Identities=20% Similarity=0.161 Sum_probs=58.7
Q ss_pred CccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCCC-CccHHHHHHcCCeEEeHHHHHHHHhc
Q psy11422 605 NYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKP-GKKLEKAIKLNIKILDEKNFVKIVKG 680 (687)
Q Consensus 605 ~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~-g~Kl~kA~~lgI~Ii~E~~f~~~l~~ 680 (687)
..+.+..|||||... ++++++++.+||.+..++++ +++||++... +.|+..|...|++|++.+++.+.++.
T Consensus 8 ~~~~~~~v~~sG~~~----~~~~~~i~~lGg~~~~~~~~-~THlI~~~~~rt~K~l~a~~~g~~IV~~~Wl~~~~~~ 79 (209)
T 2etx_A 8 QESTAPKVLFTGVVD----ARGERAVLALGGSLAGSAAE-ASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKA 79 (209)
T ss_dssp ----CCEEEECSSCC----HHHHHHHHHTTCEECSSTTT-CSEEECSSCCCSHHHHHHHHHTCCEECTHHHHHHHHH
T ss_pred ccCCCcEEEEeCCCc----HHHHHHHHHCCCEEeCCCCC-ceEEEECCCCCCHHHHHHHhcCCccccHHHHHHHHHc
Confidence 457799999999753 45799999999999999985 9999998743 58999999999999999999998753
No 66
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=96.95 E-value=0.00078 Score=58.03 Aligned_cols=52 Identities=10% Similarity=0.092 Sum_probs=47.2
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 460 MNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 460 l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
..|+|+|++++.+|++.- .++.+|+..+.++|..++|+|++.|+.|++.+..
T Consensus 35 ~~IpgIG~~~A~~Ll~~f--gs~~~l~~as~~eL~~i~GIG~~~a~~I~~~l~~ 86 (91)
T 2a1j_B 35 TTVKSVNKTDSQTLLTTF--GSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 86 (91)
T ss_dssp TTSTTCCHHHHHHHHHHH--SSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHHS
T ss_pred HcCCCCCHHHHHHHHHHC--CCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHhh
Confidence 389999999999999862 4789999999999999999999999999999864
No 67
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=96.82 E-value=0.0022 Score=63.98 Aligned_cols=76 Identities=5% Similarity=0.003 Sum_probs=52.8
Q ss_pred CccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEccccccc------ccEEEEcCCC---CccHHH-HHHcCCeEEeHHHH
Q psy11422 605 NYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKN------TNYLVKGQKP---GKKLEK-AIKLNIKILDEKNF 674 (687)
Q Consensus 605 ~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~------t~~LV~G~~~---g~Kl~k-A~~lgI~Ii~E~~f 674 (687)
..|.|.+|+|+|.+...++++++++|+..||++..+.+.. +.++|++... ..+++. |...+++|++.+++
T Consensus 116 ~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~Wl 195 (229)
T 1l0b_A 116 KLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWV 195 (229)
T ss_dssp -CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-------------------CEEETHHH
T ss_pred hhhcCceEEEEecCCCCCHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHHHHcCCeEeehhHH
Confidence 4799999999998877789999999999999999998764 4467777542 345443 35679999999999
Q ss_pred HHHHhc
Q psy11422 675 VKIVKG 680 (687)
Q Consensus 675 ~~~l~~ 680 (687)
++.+..
T Consensus 196 ldsI~~ 201 (229)
T 1l0b_A 196 LDSISV 201 (229)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 998854
No 68
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=96.79 E-value=0.00067 Score=77.54 Aligned_cols=56 Identities=25% Similarity=0.189 Sum_probs=49.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHhc-CChhhhhcccCccHHHHHHHHHHHHHc
Q psy11422 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYK-INFKNLLRLDRVSNKLANNILLAIQKS 514 (687)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~-L~~~~L~~l~gfG~Ksa~~Ll~~Ie~s 514 (687)
..+.|+|+|||++.+|++. .+.|++||.. +..+.|..+||||+|++++|+.+|+..
T Consensus 98 ~L~~v~GVGpk~A~~i~~~-G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~~l~~~ 154 (578)
T 2w9m_A 98 DLLGVRGLGPKKIRSLWLA-GIDSLERLREAAESGELAGLKGFGAKSAATILENVVFL 154 (578)
T ss_dssp HHTTSTTCCHHHHHHHHHT-TCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHHHHHHH
T ss_pred HHhCCCCcCHHHHHHHHHc-CCCCHHHHHHHHhhCccccCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999 4699999998 466789999999999999999888753
No 69
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=96.61 E-value=0.0028 Score=63.13 Aligned_cols=51 Identities=14% Similarity=0.211 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHhhcCC---hHHHHhcCHHHHhcCCCCCHHHHHHHHHHHcc
Q psy11422 527 GIRHVGETTAKELANYFKN---LECMFKATEEQLLNIPKIGSTTVKAFIKFINQ 577 (687)
Q Consensus 527 GIp~vG~~~Ak~La~~f~s---ld~l~~As~eeL~~I~GIG~~~A~sI~~ff~~ 577 (687)
.++|||+++|..|..+|+. ..++...+.+.|.++||||+++|+.|..-+.+
T Consensus 92 sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 92 SVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRD 145 (212)
T ss_dssp TSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTT
T ss_pred CcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 5999999999999999974 23466779999999999999999998766554
No 70
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=96.59 E-value=0.0025 Score=72.83 Aligned_cols=84 Identities=14% Similarity=0.278 Sum_probs=64.2
Q ss_pred hhhcccCccHHHHHHHHHHHHHcccCCH--------HHHHHHcCCCCCCHHHHHHHHhh-cCChHHHHhc-CHHHHhcCC
Q psy11422 492 NLLRLDRVSNKLANNILLAIQKSKLTTF--------SRFIYALGIRHVGETTAKELANY-FKNLECMFKA-TEEQLLNIP 561 (687)
Q Consensus 492 ~L~~l~gfG~Ksa~~Ll~~Ie~sk~~~l--------~r~L~aLGIp~vG~~~Ak~La~~-f~sld~l~~A-s~eeL~~I~ 561 (687)
.+..+||+|++.+.++...++.-....+ .-|+.-+.|+|||+++|+.|.+. |.++++|..| ....|.+++
T Consensus 58 ~~~~lp~iG~~~~~~i~~~v~~g~~~~~~~~~~~~~~~~~~L~~v~GVGpk~A~~i~~~G~~s~edL~~a~~~~~L~~~~ 137 (578)
T 2w9m_A 58 EFTGIPKVGKGIAAELSDFARSGTFAPLEAAAGQLPPGLLDLLGVRGLGPKKIRSLWLAGIDSLERLREAAESGELAGLK 137 (578)
T ss_dssp -CCSSTTCCHHHHHHHHHHHHHSSCHHHHHHHHHSCHHHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHHHHHHTTTTTST
T ss_pred hhhhcCCCChhHHHHHHHHHcCChHHHHHHHhhhhHHHHHHHhCCCCcCHHHHHHHHHcCCCCHHHHHHHHhhCccccCC
Confidence 3899999999999988888764221111 12344469999999999988764 7899999876 345899999
Q ss_pred CCCHHHHHHHHHHH
Q psy11422 562 KIGSTTVKAFIKFI 575 (687)
Q Consensus 562 GIG~~~A~sI~~ff 575 (687)
|||++++++|...+
T Consensus 138 GiG~Ktaq~I~~~l 151 (578)
T 2w9m_A 138 GFGAKSAATILENV 151 (578)
T ss_dssp TCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999995544
No 71
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=96.59 E-value=0.0034 Score=61.73 Aligned_cols=77 Identities=10% Similarity=0.107 Sum_probs=59.0
Q ss_pred CCccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccc-----c-EEEEcCCC--C-ccH-HHHHHcCCeEEeHHH
Q psy11422 604 KNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNT-----N-YLVKGQKP--G-KKL-EKAIKLNIKILDEKN 673 (687)
Q Consensus 604 ~~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t-----~-~LV~G~~~--g-~Kl-~kA~~lgI~Ii~E~~ 673 (687)
...|.|.+|+|+|.+...+|++++.+|+..||++..+++..+ . ++|+.... . .|. ..|...|++|++.++
T Consensus 113 ~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~W 192 (214)
T 1t15_A 113 RKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREW 192 (214)
T ss_dssp SCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHHH
T ss_pred CcccCCCEEEEEecCCCCCHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHHhcCCcEEeccH
Confidence 357999999999988777899999999999999999987632 3 33443221 1 233 245678999999999
Q ss_pred HHHHHhc
Q psy11422 674 FVKIVKG 680 (687)
Q Consensus 674 f~~~l~~ 680 (687)
+++-+..
T Consensus 193 i~dsi~~ 199 (214)
T 1t15_A 193 VLDSVAL 199 (214)
T ss_dssp HHHHHHH
T ss_pred HHHhHhh
Confidence 9998864
No 72
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=96.56 E-value=0.0047 Score=61.14 Aligned_cols=76 Identities=11% Similarity=0.072 Sum_probs=61.0
Q ss_pred CccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEccccccc--ccEEEEcCCCC-ccHHHHHHcCCeEEeHHHHHHHHhcc
Q psy11422 605 NYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKN--TNYLVKGQKPG-KKLEKAIKLNIKILDEKNFVKIVKGF 681 (687)
Q Consensus 605 ~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~--t~~LV~G~~~g-~Kl~kA~~lgI~Ii~E~~f~~~l~~~ 681 (687)
..|.|++|++|+... .++++++++|+..||++....... .+.+|++.... .+++.+.+.|+++++.+++++-+..+
T Consensus 114 ~lF~g~~~~~~~~~~-~~~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~d~~~~~~~~~~~i~vvs~eWi~~sI~~q 192 (209)
T 2etx_A 114 RLLEGYEIYVTPGVQ-PPPPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFPHCSIPLRVGLPLLSPEFLLTGVLKQ 192 (209)
T ss_dssp CTTTTCEEEECTTCS-SCHHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGGGGGGCHHHHHHTCCEECTHHHHHHHHHT
T ss_pred CCcCCcEEEEeCCCC-CCHHHHHHHHHHCCCEEECCCCCCCCCceEEEECcccHHHHHHHHHCCCeEEcHHHHHHHHHhc
Confidence 479999999999875 489999999999999999877653 24555554433 67778888899999999999887543
No 73
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=96.55 E-value=0.0013 Score=75.19 Aligned_cols=57 Identities=21% Similarity=0.224 Sum_probs=50.5
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHhc-CChhhhhcccCccHHHHHHHHHHHHHc
Q psy11422 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYK-INFKNLLRLDRVSNKLANNILLAIQKS 514 (687)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~-L~~~~L~~l~gfG~Ksa~~Ll~~Ie~s 514 (687)
..+.|+|+|||++.++++...+.+++||.. +..++|.++||||+|+|++|+.+++..
T Consensus 94 ~l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i~~~l~~~ 151 (575)
T 3b0x_A 94 EVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERIREGLALA 151 (575)
T ss_dssp HHHTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTGGGGSTTCCHHHHHHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCCCCccHHHHHHHHHHHH
Confidence 467899999999999999856799999998 556789999999999999998888753
No 74
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=96.48 E-value=0.0047 Score=62.47 Aligned_cols=72 Identities=21% Similarity=0.227 Sum_probs=62.1
Q ss_pred cCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcc--cccccccEEEEcCCC-CccHHHHHHcCCeEEeHHHHHHHHh
Q psy11422 607 LKEKIFVFTGSLYAFKRNEAIILIENLGGKVVN--FISKNTNYLVKGQKP-GKKLEKAIKLNIKILDEKNFVKIVK 679 (687)
Q Consensus 607 l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~--sVsk~t~~LV~G~~~-g~Kl~kA~~lgI~Ii~E~~f~~~l~ 679 (687)
-.+..|+|||..+ -.|+++.++|+.+||.+.. +++.++++||++... +-|+-.|...|..|++.+++.+.++
T Consensus 7 ~~~~~~~~Sg~~~-~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~aia~G~wIvs~~wl~~s~~ 81 (235)
T 3al2_A 7 KKQYIFQLSSLNP-QERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRT 81 (235)
T ss_dssp -CCCEEEEESCCH-HHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHHHTTCEEECTHHHHHHHH
T ss_pred CCCEEEEEcCCCH-HHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHHHcCCcCccHHHHHHHHH
Confidence 3578999999653 4688999999999999975 588999999999853 5899999999999999999998774
No 75
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=96.46 E-value=0.0056 Score=61.22 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=60.9
Q ss_pred CccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEccccccc------------ccEEEEcCC-CCccHHHHHHcCCeEEeH
Q psy11422 605 NYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKN------------TNYLVKGQK-PGKKLEKAIKLNIKILDE 671 (687)
Q Consensus 605 ~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~------------t~~LV~G~~-~g~Kl~kA~~lgI~Ii~E 671 (687)
..|.|++|++||.+. .++++++++|+.+||++.....+. .+++|+... .-...+++.+.|++|++-
T Consensus 121 ~LF~G~~f~it~~~~-~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~~~ivis~~~d~~~~~~~~~~~~~v~s~ 199 (219)
T 3sqd_A 121 PLFKAKYFYITPGIC-PSLSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCENDLHLCREYFARGIDVHNA 199 (219)
T ss_dssp CTTTTEEEEECTTCS-SCHHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSCEEEEEECGGGGGGGHHHHHTTCCCEET
T ss_pred cccCCcEEEEeCCCC-CCHHHHHHHHHHCCCEEECCCCchHHhhhhhcccCCCCEEEEecccHHHHHHHHHHCCCcEEeH
Confidence 478999999999886 589999999999999999987542 356665554 337778888899999999
Q ss_pred HHHHHHHhc
Q psy11422 672 KNFVKIVKG 680 (687)
Q Consensus 672 ~~f~~~l~~ 680 (687)
+.+++-+-.
T Consensus 200 E~il~~Il~ 208 (219)
T 3sqd_A 200 EFVLTGVLT 208 (219)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999986543
No 76
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=96.45 E-value=0.00047 Score=70.11 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=0.0
Q ss_pred cCCCCCCHHHHHHHHhh-cCChHHHHhcCHHHHhcCCCCCHHHHHHHHHHHcc
Q psy11422 526 LGIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQ 577 (687)
Q Consensus 526 LGIp~vG~~~Ak~La~~-f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ff~~ 577 (687)
+.|||||+++|+.|.++ |++++.|..++.++|.+++|||+++|+.|..++..
T Consensus 18 ~~IpGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~~ 70 (241)
T 1vq8_Y 18 TDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKADVGG 70 (241)
T ss_dssp -----------------------------------------------------
T ss_pred hcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHHH
Confidence 46899999999998887 99999999999999999999999999999888753
No 77
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=96.39 E-value=0.0026 Score=51.07 Aligned_cols=50 Identities=16% Similarity=0.243 Sum_probs=45.4
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHH-HHHHHHHHHH
Q psy11422 460 MNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKL-ANNILLAIQK 513 (687)
Q Consensus 460 l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ks-a~~Ll~~Ie~ 513 (687)
.+|||+|+++..+|++.- .|+.+|..++.++|.++ +|.+. |++|++.++.
T Consensus 7 ~~IpGIG~kr~~~LL~~F--gs~~~i~~As~eeL~~v--ig~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 7 LKMPGVNAKNCRSLMHHV--KNIAELAALSQDELTSI--LGNAANAKQLYDFIHT 57 (63)
T ss_dssp HTSTTCCHHHHHHHHHHC--SSHHHHHTCCHHHHHHH--HSCHHHHHHHHHHHHC
T ss_pred HcCCCCCHHHHHHHHHHc--CCHHHHHHCCHHHHHHH--cCchHHHHHHHHHHhc
Confidence 479999999999999865 69999999999999999 88999 9999998864
No 78
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=96.35 E-value=0.0017 Score=53.75 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=20.1
Q ss_pred cCHHHHhcCCCCCHHHHHHHHHHH
Q psy11422 552 ATEEQLLNIPKIGSTTVKAFIKFI 575 (687)
Q Consensus 552 As~eeL~~I~GIG~~~A~sI~~ff 575 (687)
++.++|.+++|+|+++++.|..|+
T Consensus 50 ~s~~eL~~v~Gig~k~~~~i~~~l 73 (75)
T 2duy_A 50 ARVEDLLKVKGIGPATLERLRPYL 73 (75)
T ss_dssp SSGGGGGGSTTCCHHHHHHHGGGE
T ss_pred CCHHHHHhCCCCCHHHHHHHHHhc
Confidence 567888899999999999888775
No 79
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=96.33 E-value=0.0045 Score=50.84 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=48.8
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 460 MNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 460 l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
|++.|+++..+++|+++|+ .|+.++-..+.++|+.++||.+..+++|.+.-.+
T Consensus 9 ~~~lgI~e~~a~~L~~~Gf-~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~~ 61 (70)
T 1u9l_A 9 TKYLDIDEDFATVLVEEGF-STLEELAYVPMKELLEIEGLDEPTVEALRERAKN 61 (70)
T ss_dssp HHHHTCCHHHHHHHHHTTC-CCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHcCc-CcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHHH
Confidence 5788999999999999997 8999999999999999999999999999987643
No 80
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=96.32 E-value=0.0058 Score=60.16 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=61.7
Q ss_pred CCeEEEEEcCCCcCCHHHHHHHHHhcCC-EEcccccccccEEEEcCC-CCccHHHHHHcCCeEEeHHHHHHHHh
Q psy11422 608 KEKIFVFTGSLYAFKRNEAIILIENLGG-KVVNFISKNTNYLVKGQK-PGKKLEKAIKLNIKILDEKNFVKIVK 679 (687)
Q Consensus 608 ~g~~vv~TG~l~~~~R~e~~~~i~~~Gg-~v~~sVsk~t~~LV~G~~-~g~Kl~kA~~lgI~Ii~E~~f~~~l~ 679 (687)
....||+||.-. -.|+++.++++.+|| .++++++..|++||++.. -+.|+..|...|+.|++.+++.+.++
T Consensus 10 ~~~~~~~sgl~~-~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~~rT~K~l~ai~~g~~Iv~~~Wv~~~~~ 82 (199)
T 3u3z_A 10 PTRTLVMTSMPS-EKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLE 82 (199)
T ss_dssp CCCEEEEESCCH-HHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSCCCBHHHHHHHHTTCEEEETHHHHHHHH
T ss_pred CCeEEEEcCCCH-HHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCCCCCHHHHHHHHCCCcEEeHHHHHHHhh
Confidence 367899999754 478889999999977 677999999999999885 44899999999999999999998775
No 81
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=96.32 E-value=0.0092 Score=68.06 Aligned_cols=118 Identities=17% Similarity=0.190 Sum_probs=79.0
Q ss_pred ccccCCCCHHHHHHHHHC-----CCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHHcccC--------CHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNA-----NIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLT--------TFSRFIYA 525 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~-----g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~sk~~--------~l~r~L~a 525 (687)
.|.+.|-.+=.+...-.+ .+=..+.++.....+.+..|||+|++.+.++...++.-.-. ...-|..-
T Consensus 16 ~~e~~g~~~~r~~aYr~Aa~~l~~~~~~i~~~~~~~~~~~~~lp~iG~~~~~~i~~~v~~g~~~l~~~~~~~~~~~~~~l 95 (575)
T 3b0x_A 16 MSEFLGDNPFRVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVGPDLAEKILEFLRTGKVRKHEELSRKVPRGVLEV 95 (575)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHCCSCHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHHSCHHHHHH
T ss_pred HHHhcCCCchhHHHHHHHHHHHHhCCcchhhHhhcchhHHHhCCCCCHHHHHHHHHHHHcCcHHHHhhhhhhhHHHHHHH
Confidence 455666554444433321 11134444444322229999999999999998888652211 11234444
Q ss_pred cCCCCCCHHHHHHHHhh--cCChHHHHhcC-HHHHhcCCCCCHHHHHHHHHHHc
Q psy11422 526 LGIRHVGETTAKELANY--FKNLECMFKAT-EEQLLNIPKIGSTTVKAFIKFIN 576 (687)
Q Consensus 526 LGIp~vG~~~Ak~La~~--f~sld~l~~As-~eeL~~I~GIG~~~A~sI~~ff~ 576 (687)
+.|+|||+++|..+... +.++++|..|- ..+|.+++|||+++|+.|..-+.
T Consensus 96 ~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i~~~l~ 149 (575)
T 3b0x_A 96 MEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERIREGLA 149 (575)
T ss_dssp HTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTGGGGSTTCCHHHHHHHHHHHH
T ss_pred hcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCCCCccHHHHHHHHHH
Confidence 69999999999998875 57899998764 35799999999999999966554
No 82
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=96.28 E-value=0.009 Score=61.26 Aligned_cols=77 Identities=10% Similarity=0.046 Sum_probs=62.2
Q ss_pred CCccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEccccc----------ccccEEEEcCC-CCccHHHHHHcCCeEEeHH
Q psy11422 604 KNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFIS----------KNTNYLVKGQK-PGKKLEKAIKLNIKILDEK 672 (687)
Q Consensus 604 ~~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVs----------k~t~~LV~G~~-~g~Kl~kA~~lgI~Ii~E~ 672 (687)
...|.|.+|++||....-.++.+..+++.+||++..... ..++++|+... +..+.+.|.+.||+|++.+
T Consensus 153 ~~LF~G~~I~i~~~~~~~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~~~~~~~~~a~~~~i~iVs~E 232 (259)
T 1kzy_C 153 ENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPASVLKCAEALQLPVVSQE 232 (259)
T ss_dssp CCTTTTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTCCHHHHHHHHHHTCCEECHH
T ss_pred CCCCCCeEEEEecCCCCCHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCCChHHHHHHHHhcCCCEecHH
Confidence 468999999999997543577888899999999887763 46788888543 3467788999999999999
Q ss_pred HHHHHHhc
Q psy11422 673 NFVKIVKG 680 (687)
Q Consensus 673 ~f~~~l~~ 680 (687)
++++.+..
T Consensus 233 Wv~~sI~~ 240 (259)
T 1kzy_C 233 WVIQCLIV 240 (259)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998753
No 83
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=96.12 E-value=0.0046 Score=55.62 Aligned_cols=50 Identities=24% Similarity=0.281 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHHc
Q psy11422 464 GLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKS 514 (687)
Q Consensus 464 GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~s 514 (687)
|+|+.++++|.++|+ .|+.++-..+.++|..++|+++.+|++|+++..+.
T Consensus 32 GIg~~~i~kL~eAG~-~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl 81 (114)
T 1b22_A 32 GINANDVKKLEEAGF-HTVEAVAYAPKKELINIKGISEAKADKILAEAAKL 81 (114)
T ss_dssp TCSHHHHHHHHTTCC-SSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCc-CcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 999999999999997 89999999999999999999999999999987653
No 84
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=95.98 E-value=0.0086 Score=59.05 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=56.7
Q ss_pred CCccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccc------------------------cccEEEEcCCCCccHH
Q psy11422 604 KNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISK------------------------NTNYLVKGQKPGKKLE 659 (687)
Q Consensus 604 ~~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk------------------------~t~~LV~G~~~g~Kl~ 659 (687)
...|.|.+|+++|.+...+|++++++|+..||++.+...+ -|.|+|.......+.+
T Consensus 102 ~~lF~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~~~~~~ 181 (210)
T 2nte_A 102 PKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLCNYHPE 181 (210)
T ss_dssp CCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSCSSCCCS
T ss_pred ccccCceEEEEeccCCCCCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccccccCHH
Confidence 3479999999999887778999999999999999863211 1345554332112223
Q ss_pred HHHHcCCeEEeHHHHHHHHhcc
Q psy11422 660 KAIKLNIKILDEKNFVKIVKGF 681 (687)
Q Consensus 660 kA~~lgI~Ii~E~~f~~~l~~~ 681 (687)
.|...+|++++.++|++.+...
T Consensus 182 ~~~~~~v~~V~~~Wl~dcI~~~ 203 (210)
T 2nte_A 182 RVRQGKVWKAPSSWFIDCVMSF 203 (210)
T ss_dssp CSEETTEEEEEHHHHHHHHHHT
T ss_pred HHhccCcccccHHHHHHHHHhC
Confidence 4566789999999999988653
No 85
>2hvq_A ORF1, hypothetical 37.6 kDa protein in GP24-HOC intergenic region; RNA, ligase, lysine adenylate; HET: APK; 2.40A {Enterobacteria phage T4} PDB: 2hvr_A* 2hvs_A*
Probab=95.97 E-value=0.034 Score=59.14 Aligned_cols=138 Identities=13% Similarity=0.065 Sum_probs=83.0
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhhccCCCeeEEEEEccceeEEEEEEeCCEEEEEEecCCCCccch--------hhhhhh
Q psy11422 89 MMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGEN--------ITTNIH 160 (687)
Q Consensus 89 MlSL~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeD--------vT~n~~ 160 (687)
.-||.|-++. .|++.+... + .....++++.|+||-++++.+.+|. +.+.|||--. -.+ +++...
T Consensus 6 Y~si~n~~~~----~~i~~~~~~-~-l~~~~vvvtEKlDG~N~~i~~~~~~-i~~~sR~~~l-~~~~~~~~~~~~~~~~~ 77 (335)
T 2hvq_A 6 YSSLENHYNS----KFIEKLYSL-G-LTGGEWVAREXIHGTNFSLIIERDK-VTCAKRTGPI-LPAEDFFGYEIILKNYA 77 (335)
T ss_dssp CCCCEETTCH----HHHHHHHHT-T-CSCSCEEEEECCSSEEEEEEEETTE-EEEEETTEEC-CTTCCCTTTHHHHHHHH
T ss_pred CCCCcchhhh----hHHHHHHhh-c-cCCCcEEEEEEecCcceEEEEECCE-EEEecCCccc-CCccccchHHHHHHHHH
Confidence 3467777752 344444321 1 1134799999999999999998888 5799998333 222 555543
Q ss_pred -hhccCCcccccCCCCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEecc-
Q psy11422 161 -IIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG- 238 (687)
Q Consensus 161 -~i~~iP~~l~~~~~~~~~evRGEi~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~~- 238 (687)
.|..+-..|... .+..+.|-||.+=+. -|.+-... +..|++|+|-
T Consensus 78 ~~i~~L~~~l~~~-~~~~~~i~GE~~G~~-----------------------------Iq~~i~Y~---~~~FyvFDI~~ 124 (335)
T 2hvq_A 78 DSIKAVQDIMETS-AVVSYQVFGEFAGPG-----------------------------IQKNVDYG---DKDFYVFDIIV 124 (335)
T ss_dssp HHHHHHHTTHHHH-TEEEEEEEEEEESBT-----------------------------TBSSCCCC---SSEEEEEEEEE
T ss_pred HHHHHHHHHhhcc-CCCcEEEEEEEccCc-----------------------------ccCCcccC---CCeEEEEEEEE
Confidence 233333233210 135799999998321 11111111 4589999975
Q ss_pred cccCC-CCCCCHHHHHHHHHhcCCCCCCCc
Q psy11422 239 ELRGM-NMPSSHSELLNWYQKIGLSICGEY 267 (687)
Q Consensus 239 ~~~~~-~~~~~~~e~l~~L~~~Gf~~~~~~ 267 (687)
..++. ...-+..+..+++..+||++++..
T Consensus 125 ~~~~~~~~~l~~~~~~~l~~~~gl~~VP~L 154 (335)
T 2hvq_A 125 TTESGDVTYVDDYMMESFCNTFKFKMAPLL 154 (335)
T ss_dssp EETTCCEEECCHHHHHHHHHHHTCEESCEE
T ss_pred ecCCCceeeCCHHHHHHHHHHcCCCeecee
Confidence 32220 012578888899999999988743
No 86
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=95.84 E-value=0.0055 Score=69.72 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=48.1
Q ss_pred cccccCCCCHHHHHHHHHCC---CCCChHHHhcCChhhhhcccCccHHHHHHHHHHH---HHcccCCHHHHHHHcCCCCC
Q psy11422 458 KAMNIIGLGKKMIEKLVNAN---IVVTAVDLYKINFKNLLRLDRVSNKLANNILLAI---QKSKLTTFSRFIYALGIRHV 531 (687)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g---~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~I---e~sk~~~l~r~L~aLGIp~v 531 (687)
+.+.++|+|+|.+++|+++- .-.++.-++. =+.++++|++.|..|.+.+ +.-.+.+...+ ..|+||
T Consensus 481 ~L~~l~g~geKsa~nL~~aIe~sk~~~l~r~l~-----aLGI~~vG~~~a~~La~~f~sl~~l~~a~~e~l---~~i~gi 552 (586)
T 4glx_A 481 KLTGLERMGPKSAQNVVNALEKAKETTFARFLY-----ALGIREVGEATAAGLAAYFGTLEALEAASIEEL---QKVPDV 552 (586)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHHHTBCCHHHHHH-----HTTCTTCCHHHHHHHHHHHCSHHHHHHCCHHHH---TTSTTC
T ss_pred HHhcccCccHHHHHHHHHHHHHHcCCCHHHHHH-----HcCCCchhHHHHHHHHHHcCCHHHHHccCHHHH---hcCCCc
Confidence 56778899999999988631 1112222221 1456778888887776654 22222332221 368888
Q ss_pred CHHHHHHHHhhcCC
Q psy11422 532 GETTAKELANYFKN 545 (687)
Q Consensus 532 G~~~Ak~La~~f~s 545 (687)
|+.+|..|.+.|..
T Consensus 553 G~~~A~si~~ff~~ 566 (586)
T 4glx_A 553 GIVVASHVHNFFAE 566 (586)
T ss_dssp CHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHcC
Confidence 88888888777754
No 87
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=95.84 E-value=0.015 Score=48.06 Aligned_cols=52 Identities=12% Similarity=0.210 Sum_probs=46.7
Q ss_pred ccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 461 NIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 461 ~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
+--+|+.....-|-.+| |.++.||...+.++|.+++|||+|+.+.|.+.+++
T Consensus 12 e~L~LS~Ra~NcLkrag-I~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~~ 63 (73)
T 1z3e_B 12 EELDLSVRSYNCLKRAG-INTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEE 63 (73)
T ss_dssp GGSCCBHHHHHHHHHTT-CCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHcC-CCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 33478999999999888 79999999999999999999999999999988764
No 88
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3
Probab=95.83 E-value=0.018 Score=62.55 Aligned_cols=174 Identities=11% Similarity=-0.003 Sum_probs=97.4
Q ss_pred eEEEEEccceeEEEEEEe----CCEEEEEEecCCCCccchhhhhhhhhccCCccccc-CCCCceEEEEEEEEeehhhHHH
Q psy11422 119 EYIAELKFDGIAVNLRYE----YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-KYPPELLEVRCEVLIYKKDFIK 193 (687)
Q Consensus 119 ~~~~e~KiDGlsi~l~Y~----~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~l~~-~~~~~~~evRGEi~~~~~~F~~ 193 (687)
.|++|+|.||+-+.+... +|.=+.+.||+ |++++-.-...+.+...... ...+....+-||+++....
T Consensus 61 ~~~ve~K~DG~R~ll~~~~~~~~g~~v~L~sR~----~~~~~i~~~~FP~~~~~~~~~~~~~~~~vLDGElV~~~~~--- 133 (395)
T 1p16_A 61 DYFVCEKTDGLRCLLFLINDPDKGEGVFLVTRE----NDYYFIPNIHFPLSVNETREKPTYHHGTLLDGELVLENRN--- 133 (395)
T ss_dssp CEEEEEEECSEEEEEEEEEETTTEEEEEEEETT----CCEEECCSCCCCSCTTCCSSSCCCCSSEEEEEEEEEECCS---
T ss_pred CEEEEECccceEEEEEEeecccCCCEEEEEeCC----CceEEeccccCCcccccccchhccCCcceeeeEEEEeccC---
Confidence 699999999999988662 44557999996 56644211111211111100 0124468899999986421
Q ss_pred HHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEecccccCCCC-CCCHHHHHHHHHhcCCCC---------
Q psy11422 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM-PSSHSELLNWYQKIGLSI--------- 263 (687)
Q Consensus 194 ~n~~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~~~~~~~~~-~~~~~e~l~~L~~~Gf~~--------- 263 (687)
....++.|++|++...+|.++ .....+.++.|+++=+..
T Consensus 134 -------------------------------~~~~~~~f~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~~~~~~~~~~~ 182 (395)
T 1p16_A 134 -------------------------------VSEPVLRYVIFDALAIHGKCIIDRPLPKRLGYITENVMKPFDNFKKHNP 182 (395)
T ss_dssp -------------------------------SSCCEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHTHHHHHHHHHHCH
T ss_pred -------------------------------CCcceeEEEEEEEEEECCeEcccCCHHHHHHHHHHHhhcccHhhhhcCc
Confidence 012578999999987766432 146778888887742110
Q ss_pred -------CCC-ceEe--CCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCC-ceeeE
Q psy11422 264 -------CGE-YSVL--SGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLS-KEALT 332 (687)
Q Consensus 264 -------~~~-~~~~--~~~~ei~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~-~~~~T 332 (687)
.+. .... .....+.++++. -..+.+..||||+|--+..++- | +.+ --+=||.+. .++..
T Consensus 183 ~~~~~~~~pf~v~~~~~~~~~~~~~~~~~----~~~~~~g~EGlI~K~~ds~Y~~--G---r~~-~wlKwK~~~~~TvDf 252 (395)
T 1p16_A 183 DIVNSPEFPFKVGFKTMLTSYHADDVLSK----MDKLFHASDGLIYTCAETPYVF--G---TDQ-TLLKWKPAEENTVDF 252 (395)
T ss_dssp HHHSCTTSCCEEEECCCEEGGGTHHHHTT----GGGCSSCEEEEEEEESSSCCCS--E---EEE-EEEEECCGGGCCEEE
T ss_pred cccccccCceEEEEecchhHHHHHHHHHH----HHhcCCCCCeEEEEeCCCCcCC--C---Ccc-ceEEEecCCCeEEEE
Confidence 000 0111 112333344332 2345789999999987755442 2 222 335667644 34444
Q ss_pred EEEEEEEe
Q psy11422 333 KIKAINIQ 340 (687)
Q Consensus 333 ~v~~I~~q 340 (687)
+|.....|
T Consensus 253 vl~~~~~~ 260 (395)
T 1p16_A 253 QLEFVFNE 260 (395)
T ss_dssp EEEEECEE
T ss_pred EEEEEecc
Confidence 55544444
No 89
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=95.80 E-value=0.01 Score=58.34 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=54.3
Q ss_pred CCccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCCCCccHHHHHHcCCeEEeHHHHHHHHhc
Q psy11422 604 KNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 680 (687)
Q Consensus 604 ~~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g~Kl~kA~~lgI~Ii~E~~f~~~l~~ 680 (687)
...|+|+.|++.+.+...+|++++++|+.+||++..++. +++++| |+... ++..++++++++++++-+..
T Consensus 117 ~~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~-~~~iiI-~~~~~-----~~~~~~~~V~p~Wi~DsI~~ 186 (199)
T 3u3z_A 117 GTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVPR-QASIVI-GPYSG-----KKKATVKYLSEKWVLDSITQ 186 (199)
T ss_dssp CCTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSGG-GCSEEE-SCCCS-----CCCTTCEEECHHHHHHHHHH
T ss_pred chhhCCCeEEEECCCCCCCHHHHHHHHHHcCCEEeccCC-CCEEEE-eCCch-----hccCCCcEEChhHHHHHHHc
Confidence 457999964444444457999999999999999999985 677765 55433 24679999999999998864
No 90
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=95.63 E-value=0.011 Score=59.17 Aligned_cols=68 Identities=16% Similarity=0.071 Sum_probs=58.2
Q ss_pred CCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCCC-CccHHHHHHcCCeEEeHHHHHHHHhc
Q psy11422 608 KEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKP-GKKLEKAIKLNIKILDEKNFVKIVKG 680 (687)
Q Consensus 608 ~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~-g~Kl~kA~~lgI~Ii~E~~f~~~l~~ 680 (687)
.+..|+|||.-.. +.+++++.+||.+.++++ ++++||++... +.|+-.|...|++|++.+++.+.++.
T Consensus 7 ~~~~v~fSG~~~~----~~~~~i~~lGg~v~~~~~-~~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~ 75 (220)
T 3l41_A 7 KRVYITFTGYDKK----PSIDNLKKLDMSITSNPS-KCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKT 75 (220)
T ss_dssp CCEEEEECSCSSC----CCCGGGGGGTEEECSCTT-TCSEEECSSCCCBHHHHHHGGGCCEEECHHHHHHHHHH
T ss_pred ceEEEEEeccCCC----CCcchHhhcceeeccCch-hhhhhhhhhHhhhcceeecCCCCCeEEEhHHHHhhhhh
Confidence 4779999998653 348999999999999986 59999998754 48999999999999999999988753
No 91
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=95.60 E-value=0.0075 Score=51.32 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=45.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHH-HHHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKL-ANNILLAIQK 513 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ks-a~~Ll~~Ie~ 513 (687)
..+|||+|+++..+|++.- .|+.+|..++.++|..+ +|.+. |++|++.+..
T Consensus 20 L~~IpGIG~kr~~~LL~~F--gSl~~i~~AS~eEL~~v--ig~~~~A~~I~~~l~~ 71 (84)
T 1z00_B 20 LLKMPGVNAKNCRSLMHHV--KNIAELAALSQDELTSI--LGNAANAKQLYDFIHT 71 (84)
T ss_dssp HHTCSSCCHHHHHHHHHHS--SCHHHHHHSCHHHHHHH--HSCHHHHHHHHHHHTS
T ss_pred HHhCCCCCHHHHHHHHHHc--CCHHHHHHCCHHHHHHH--hCchHHHHHHHHHHHh
Confidence 3479999999999999854 69999999999999999 88998 9999998853
No 92
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=95.60 E-value=0.0069 Score=69.93 Aligned_cols=80 Identities=19% Similarity=0.300 Sum_probs=40.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhh---hcccCccHHHHHHHHHHH---HHcccCCHHHHHHHcCCCCC
Q psy11422 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL---LRLDRVSNKLANNILLAI---QKSKLTTFSRFIYALGIRHV 531 (687)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L---~~l~gfG~Ksa~~Ll~~I---e~sk~~~l~r~L~aLGIp~v 531 (687)
+.+.++|+|+|+.++|+++ +..--.-.-.++ +.++|+|++.|+.|++.+ +.-++.+...+ ..|+||
T Consensus 481 ~L~~l~gfG~Ksa~nLl~a-----Ie~sk~~~l~R~L~algi~~VG~~~Ak~La~~Fgsl~~l~~As~eeL---~~i~GI 552 (671)
T 2owo_A 481 KLTGLERMGPKSAQNVVNA-----LEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEEL---QKVPDV 552 (671)
T ss_dssp HHHTSTTCCHHHHHHHHHH-----HHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHCSHHHHHTCCHHHH---TTSTTC
T ss_pred HhhcccccchhHHHHHHHH-----HHHHhcCChhheehhhcccCccHHHHHHHHHHcCCHHHHHhCCHHHH---hhcCCC
Confidence 3455667777777777652 111111111221 256667777776666643 22233332211 256677
Q ss_pred CHHHHHHHHhhcCC
Q psy11422 532 GETTAKELANYFKN 545 (687)
Q Consensus 532 G~~~Ak~La~~f~s 545 (687)
|+.+|+.|.+.|..
T Consensus 553 G~~~A~sI~~ff~~ 566 (671)
T 2owo_A 553 GIVVASHVHNFFAE 566 (671)
T ss_dssp CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHh
Confidence 77777666666643
No 93
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=95.48 E-value=0.0024 Score=72.87 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=0.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHHcccCCHHHHHHHcCC
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGI 528 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGI 528 (687)
||+|+|+|+++.+.|.+.- .|+..|..++.++|.+++|+|++.|+.|++.++...+..+..-|.+.|+
T Consensus 531 aLGIp~VG~~~ak~La~~F--gsle~L~~As~eeL~~I~GIG~~~A~sI~~ff~~~~n~~~i~~L~~~Gv 598 (615)
T 3sgi_A 531 ALSIRHVGPTAARALATEF--GSLDAIAAASTDQLAAVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGV 598 (615)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HcCCCCCCHHHHHHHHHHc--CCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHcCHHHHHHHHHHHHcCC
Confidence 4555555555555554431 3455555555555666666666666666655555555444333334443
No 94
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=95.47 E-value=0.012 Score=67.75 Aligned_cols=68 Identities=19% Similarity=0.339 Sum_probs=33.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHHcccCCHHHHHHHcCC
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGI 528 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGI 528 (687)
+|+|+|+|+++..+|.+.- .++..|...+.++|..++|+|++.|++|.+.+....+..+..-|.+.|+
T Consensus 509 alGI~~VG~~~Ak~La~~F--gsl~~l~~As~eeL~~I~GIG~~~A~sI~~ff~~~~~~~~i~~L~~~gv 576 (667)
T 1dgs_A 509 ALGLPGVGEVLARNLARRF--GTMDRLLEASLEELIEVEEVGELTARAILETLKDPAFRDLVRRLKEAGV 576 (667)
T ss_dssp HTTCSSCCHHHHHHHHHTT--SBHHHHTTCCHHHHHTSTTCCHHHHHHHHHHHHCHHHHHHHHHHHHTTC
T ss_pred hhccCCccHHHHHHHHHHc--CCHHHHHhCCHHHHHhccCcCHHHHHHHHHHHhhHHHHHHHHHHHHcCC
Confidence 3455555555555555431 3444555555555555555555555555555544333333333333444
No 95
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=95.43 E-value=0.024 Score=47.52 Aligned_cols=50 Identities=12% Similarity=0.230 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 463 IGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 463 ~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
=+|+.....-|-.+| |.++.||...+.++|+++.+||+|+.+.|.+.+++
T Consensus 21 L~LS~Ra~NcLk~ag-I~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~e 70 (79)
T 3gfk_B 21 LDLSVRSYNCLKRAG-INTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEE 70 (79)
T ss_dssp SCCBHHHHHHHHHTT-CCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHhC-CCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHHHHH
Confidence 378899999999998 69999999999999999999999999999888764
No 96
>1s68_A RNA ligase 2; ribonucleic acid ligase, RNA repair; HET: AMP; 1.90A {Enterobacteria phage T4} SCOP: d.142.2.4
Probab=95.29 E-value=0.067 Score=54.46 Aligned_cols=148 Identities=16% Similarity=0.116 Sum_probs=83.3
Q ss_pred cCCCCCCChHHHHHHHHHHHHhhccCCCeeEEEEEccceeEEEEEEeCCEEEEEEecCCCCcc-c------hhhhhh-hh
Q psy11422 90 MSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIG-E------NITTNI-HI 161 (687)
Q Consensus 90 lSL~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~G-e------DvT~n~-~~ 161 (687)
-||+|-|+. .|++++... +. ....++++.|+||-++++.+.+|. +.+.|||-=... + .+.+.. ..
T Consensus 6 ~~i~n~~~~----~~~~~~~~~-~~-~~~~vvvtEKldG~N~~i~~~~~~-i~~~sR~~~l~~~~~f~~~~~~~~~~~~~ 78 (249)
T 1s68_A 6 SSLENHYNS----KFIEKLYSL-GL-TGGEWVAREKIHGTNFSLIIERDK-VTCAKRTGPILPAEDFFGYEIILKNYADS 78 (249)
T ss_dssp CCCEETTCH----HHHHHHHHH-TC-SCSCEEEEECCCSEEEEEEEESSC-EEEEETTEECCTTCCCTTTHHHHHHTHHH
T ss_pred Ccccchhhh----HHHHHHHhh-cc-CCCCEEEEEEECCcceEEEEECCE-EEEEeCCcccCCCCccchHHHHHHHHHHH
Confidence 467777752 345555321 11 134799999999999999998887 569999833211 1 222221 11
Q ss_pred hccCCcccccCCCCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEecc-cc
Q psy11422 162 IHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG-EL 240 (687)
Q Consensus 162 i~~iP~~l~~~~~~~~~evRGEi~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~~-~~ 240 (687)
|..+=..|... .+..+.|-||++=+. -|.+-... +..|++|+|- +.
T Consensus 79 ~~~l~~~l~~~-~~~~~~i~GE~~G~~-----------------------------Iq~~v~Y~---~~~FyvFdI~~~~ 125 (249)
T 1s68_A 79 IKAVQDIMETS-AVVSYQVFGEFAGPG-----------------------------IQKNVDYC---DKDFYVFDIIVTT 125 (249)
T ss_dssp HHHHHHHHHHH-TEEEEEEEEEEESTT-----------------------------TSSSCCCC---SCEEEEEEEEEEE
T ss_pred HHHHHHHhccc-CCCcEEEEEEEcccc-----------------------------ccCCcccC---CCeEEEEEEEEec
Confidence 11111112100 135799999998221 11111111 4589999975 42
Q ss_pred cCC-CCCCCHHHHHHHHHhcCCCCCCCceEeCCHHHHHH
Q psy11422 241 RGM-NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIE 278 (687)
Q Consensus 241 ~~~-~~~~~~~e~l~~L~~~Gf~~~~~~~~~~~~~ei~~ 278 (687)
++. ...-+..+..+++..+||++++.... .+.+++.+
T Consensus 126 ~~g~~~~l~~~~~~~l~~~~gl~~VP~l~~-g~~~e~~~ 163 (249)
T 1s68_A 126 ESGDVTYVDDYMMESFCNTFKFKMAPLLGR-GKFEELIK 163 (249)
T ss_dssp TTCCEEECCHHHHHHHHHHHTCEESCEEEE-ECHHHHTT
T ss_pred CCCccccCCHHHHHHHHHHCCCCeecEEeE-EcHHHHhh
Confidence 211 01247778889999999998875322 34555444
No 97
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=95.24 E-value=0.027 Score=48.01 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 463 IGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 463 ~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
=+|+.....-|-.+| |.++.||...+.++|+++++||+||.+.|.+.+++
T Consensus 17 L~LSvRa~NcLkrag-I~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~ 66 (86)
T 3k4g_A 17 LELTVRSANCLXAEA-IHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLAS 66 (86)
T ss_dssp GCCCHHHHHHHHHTT-CCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHcC-CCcHHHHHhCCHHHHhhccccCcccHHHHHHHHHH
Confidence 378999999999988 79999999999999999999999999999988865
No 98
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=95.24 E-value=0.012 Score=57.78 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=42.7
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCh-HHHhcCChhhhhcccCccHHHHHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTA-VDLYKINFKNLLRLDRVSNKLANNILLAIQ 512 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i-~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie 512 (687)
...|+|+|||+..+|++.-....+ ..+..-+.++|.++||+|+|+|++|+..+.
T Consensus 74 L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 74 LLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHT
T ss_pred HhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHH
Confidence 457999999999999986532222 234556788999999999999999998875
No 99
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=95.17 E-value=0.016 Score=62.05 Aligned_cols=108 Identities=15% Similarity=0.185 Sum_probs=71.4
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHH--HHHHc--------------------ccC
Q psy11422 460 MNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILL--AIQKS--------------------KLT 517 (687)
Q Consensus 460 l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~--~Ie~s--------------------k~~ 517 (687)
-.|+|+||.+++.|.++-. |++.+-+++.++|.. +|+|+|.|..|+. .+... +..
T Consensus 471 tAIaGIGp~tAeRLLEkFG--SVe~Vm~AteDELRe-dGIGekqarrI~gl~~l~~~~~d~~~a~elkr~ygs~savr~~ 547 (685)
T 4gfj_A 471 ISIRGIDRERAERLLKKYG--GYSKVREAGVEELRE-DGLTDAQIRELKGLKTLESIVGDLEKADELKRKYGSASAVRRL 547 (685)
T ss_dssp HTSTTCCHHHHHHHHHHHT--SHHHHHHSCHHHHHH-TTCCHHHHHHHHTCHHHHHHSSSHHHHHHHHHHSSCHHHHHHS
T ss_pred eccCCCCHHHHHHHHHHhc--CHHHHHhCCHHHHHH-ccccHHHHHHHhhHHHHHHHhcchhhHHHHHHhhccHHHHHhc
Confidence 3699999999999999743 788888899999977 9999999988862 11110 011
Q ss_pred CHHHHHHHc-----------CCC-----CCCHHHHHHHHhhcCChHHHHhc-CHHHHhcCCCCCHHHHHHHH
Q psy11422 518 TFSRFIYAL-----------GIR-----HVGETTAKELANYFKNLECMFKA-TEEQLLNIPKIGSTTVKAFI 572 (687)
Q Consensus 518 ~l~r~L~aL-----------GIp-----~vG~~~Ak~La~~f~sld~l~~A-s~eeL~~I~GIG~~~A~sI~ 572 (687)
|.. =|..| ||| +..-.+|..|.+.|+++..+..+ +.++|.. +|.|++.+..|.
T Consensus 548 pv~-elrelg~sd~~ia~ikgip~~~~~~~~~e~a~~l~er~~~~~~~~~~~~~~~l~~-~g~~~~~~~eik 617 (685)
T 4gfj_A 548 PVE-ELRELGFSDDEIAEIKGIPKKLREAFDLETAAELYERYGSLKEIGRRLSYDDLLE-LGATPKAAAEIK 617 (685)
T ss_dssp CHH-HHHTTSCCHHHHHHHHTCCHHHHHHSCHHHHHHHHHHHSSSTGGGGSCGGGCCSS-SCCGGGC-----
T ss_pred cHH-HHHHcCCchhhHHHhcCCcHHHHhhcCHHHHHHHHHHhccHHHHhhcCCHHHHhc-cCCCHHHHHHhc
Confidence 111 11112 454 12335677888899999988876 6667766 777777776665
No 100
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=95.06 E-value=0.017 Score=57.53 Aligned_cols=53 Identities=11% Similarity=0.265 Sum_probs=47.4
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
.+.|+|+|++++..|.+.- .++.+|+..+.++|..++|+|++.|++|.+.+..
T Consensus 164 L~~i~gVg~~~a~~Ll~~f--gs~~~l~~a~~e~L~~v~GiG~~~a~~i~~~~~~ 216 (219)
T 2bgw_A 164 LQSFPGIGRRTAERILERF--GSLERFFTASKAEISKVEGIGEKRAEEIKKILMT 216 (219)
T ss_dssp HHTSTTCCHHHHHHHHHHH--SSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHc--CCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHhc
Confidence 3479999999999999963 5799999999999999999999999999998864
No 101
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=94.96 E-value=0.02 Score=56.58 Aligned_cols=55 Identities=13% Similarity=0.257 Sum_probs=44.1
Q ss_pred ccccCCCCHHHHHHHHHCCCCCCh-HHHhcCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTA-VDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i-~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
...|+|+|||+..+|++.-....+ ..+..-+.++|.++||+|+|+|++|+..+..
T Consensus 75 L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~elk~ 130 (203)
T 1cuk_A 75 LIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKD 130 (203)
T ss_dssp HHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 457999999999999996532222 3455577899999999999999999988853
No 102
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=94.70 E-value=0.0088 Score=49.37 Aligned_cols=42 Identities=14% Similarity=0.339 Sum_probs=20.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNIL 508 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll 508 (687)
...|+|+|+++++++++.-.. -+.++|..++|+|++.+++|.
T Consensus 29 L~~ipGIG~~~A~~Il~~r~~--------~s~~eL~~v~Gig~k~~~~i~ 70 (75)
T 2duy_A 29 LMALPGIGPVLARRIVEGRPY--------ARVEDLLKVKGIGPATLERLR 70 (75)
T ss_dssp HTTSTTCCHHHHHHHHHTCCC--------SSGGGGGGSTTCCHHHHHHHG
T ss_pred HHhCCCCCHHHHHHHHHHccc--------CCHHHHHhCCCCCHHHHHHHH
Confidence 344555555555555554311 223444455555555555543
No 103
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=94.59 E-value=0.061 Score=44.03 Aligned_cols=48 Identities=21% Similarity=0.184 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHhh-cCChHHHHhcCHHHHhcCCCCCHHHHHHHHHH
Q psy11422 527 GIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKF 574 (687)
Q Consensus 527 GIp~vG~~~Ak~La~~-f~sld~l~~As~eeL~~I~GIG~~~A~sI~~f 574 (687)
.+||+|+..+.+|.+. |.|++.|..++.++|..|.||++..|..|+.-
T Consensus 11 ~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~a 59 (70)
T 1wcn_A 11 NLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMA 59 (70)
T ss_dssp SSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHH
Confidence 6789999999988865 89999999999999999999999999988753
No 104
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Probab=94.48 E-value=0.18 Score=55.73 Aligned_cols=146 Identities=17% Similarity=0.105 Sum_probs=85.5
Q ss_pred eeEEEEEccceeEEEEEEeC----C-EEEEEEecCCCCccchhhhhhhhhccCCcc-----cccCCCCceEEEEEEEEee
Q psy11422 118 IEYIAELKFDGIAVNLRYEY----G-YLKQASTRGDGNIGENITTNIHIIHKIPLV-----LNIKYPPELLEVRCEVLIY 187 (687)
Q Consensus 118 ~~~~~e~KiDGlsi~l~Y~~----G-~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~-----l~~~~~~~~~evRGEi~~~ 187 (687)
-.|++++|.||+-+.+.... | .=+.++||++- +++-+-...+.++.. +. ..+....+-||+++.
T Consensus 65 ~dY~V~eK~DGiR~Ll~i~~~~~~g~g~v~LidR~~~----~~~v~~~~FP~~~~~~~~~~l~--~~~~~TlLDGElV~d 138 (461)
T 3kyh_C 65 HDYYVCEKTDGLRVLMFIVINPVTGEQGCFMIDRENN----YYLVNGFRFPRLPQKKKEELLE--TLQDGTLLDGELVIQ 138 (461)
T ss_dssp SCEEEEEEECSEEEEEEEEECTTTCCEEEEEECSSSC----EEEECCCCCCCCSSCCSSGGGT--CCCCSEEEEEEEEEE
T ss_pred CCEEEEEcccceEEEEEEeccccCCCceEEEEeCCCC----eEEcccccCCcccccchhhhhh--ccCCCeEEEEEEEec
Confidence 47999999999999886652 2 34788999654 454220111222221 11 134567899999995
Q ss_pred hhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEecccccCCCC-CCCHHHHHHHHHhcCCC----
Q psy11422 188 KKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM-PSSHSELLNWYQKIGLS---- 262 (687)
Q Consensus 188 ~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~~~~~~~~~-~~~~~e~l~~L~~~Gf~---- 262 (687)
... . + ....+.|++|++...+|.++ .....+.++.|.++=..
T Consensus 139 ~~~-------------------~---~-----------~~~~~~y~~FDlL~~~G~dl~~~pl~eR~~~Le~~I~~P~~~ 185 (461)
T 3kyh_C 139 TNP-------------------M---T-----------KLQELRYLMFDCLAINGRCLTQSPTSSRLAHLGKEFFKPYFD 185 (461)
T ss_dssp ECT-------------------T---T-----------CCEEEEEEEEEEEEETTEECSSSBHHHHHHHHHHTTHHHHHH
T ss_pred cCC-------------------C---C-----------CccceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhcccchh
Confidence 321 0 0 12478999999987665432 14677888888755110
Q ss_pred ----------CCCCceEeCCH---HHHHHHHHHHHHhhcCCCCccceEEEEECChhh
Q psy11422 263 ----------ICGEYSVLSGV---NKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306 (687)
Q Consensus 263 ----------~~~~~~~~~~~---~ei~~~~~~~~~~r~~l~y~iDGiVikv~~~~~ 306 (687)
..+......++ .++.++++ .-..+.+..||+|+|--+..+
T Consensus 186 ~~~~~p~~~~~~pF~V~~K~~~~~~~~~~l~~----~~~~l~~~~EGLv~k~~~spY 238 (461)
T 3kyh_C 186 LRAAYPNRCTTFPFKISMKHMDFSYQLVKVAK----SLDKLPHLSDGLIFTPVKAPY 238 (461)
T ss_dssp HHHHCSTTCSCCCSEEEECCCEEGGGHHHHHH----HHTTCSSCEEEEEEEESSSBC
T ss_pred hhhccccccccCCcEEEeccchhhhhHHHHHH----hhhhccCCCCeEEEEeCCCCC
Confidence 01111112222 23444433 124688999999999866433
No 105
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=94.30 E-value=0.02 Score=57.03 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=42.5
Q ss_pred cccCCCCHHHHHHHHHCCCCCChH-HHhcCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 460 MNIIGLGKKMIEKLVNANIVVTAV-DLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 460 l~I~GLG~k~i~~L~~~g~I~~i~-DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
..|+|+|||++..+++......+. .+..-+.+.|.++||+|+|+|++|+..+..
T Consensus 91 ~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 91 LSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRD 145 (212)
T ss_dssp HTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTT
T ss_pred cCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 349999999999999865333332 233456788999999999999999998864
No 106
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A
Probab=94.24 E-value=0.068 Score=57.01 Aligned_cols=155 Identities=15% Similarity=0.079 Sum_probs=82.4
Q ss_pred eEEEEEccceeEEEEEEe-CCEEEEEEecCCCCccchhhh-hhhhhccCCcccccCCCCceEEEEEEEEeehhhHHHHHH
Q psy11422 119 EYIAELKFDGIAVNLRYE-YGYLKQASTRGDGNIGENITT-NIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196 (687)
Q Consensus 119 ~~~~e~KiDGlsi~l~Y~-~G~l~~a~TRGdG~~GeDvT~-n~~~i~~iP~~l~~~~~~~~~evRGEi~~~~~~F~~~n~ 196 (687)
.|++++|.||.-+.+... +|. +.+.||+ |+++|. +.+. +.+.. +. ..+....+-||+++...+
T Consensus 64 ~y~v~~K~DG~R~ll~i~~~~~-v~L~sR~----~~~~~~~~~~F-P~~~~-~~--~~~~~tvLDGElV~~~~~------ 128 (343)
T 3rtx_A 64 PYKVSWKADGTRYMMLIDGTNE-VFMIDRD----NSVFHVSNLEF-PFRKD-LR--MHLSNTLLDGEMIIDKVN------ 128 (343)
T ss_dssp CEEEEEECCCEEEEEEECSTTC-EEEECTT----CCEEEETTCCC-EETTE-EE--EECCSEEEEEEEEEEESS------
T ss_pred CEEEEECCCceEEEEEEEcCCE-EEEEeCC----CCeEEeccccC-Ccchh-hh--ccCCCeEEEEEEEEecCC------
Confidence 699999999999988666 454 6889995 455653 2211 11110 11 013457899999986421
Q ss_pred HHHHcCCCCCCChhhhHHhHhhhcCcccccccccEEEEEecccccCCCC-CCCHHHHHHHHHhc-----------CCC--
Q psy11422 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM-PSSHSELLNWYQKI-----------GLS-- 262 (687)
Q Consensus 197 ~~~~~g~~~f~NpRN~aaG~lr~~~~~~~~~r~l~f~~y~~~~~~~~~~-~~~~~e~l~~L~~~-----------Gf~-- 262 (687)
| ...+.|++|++...+|.++ .....+.++.|.+. |..
T Consensus 129 ------------------g-----------~~~~~~~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~p~~~~~~~~~~~~ 179 (343)
T 3rtx_A 129 ------------------G-----------QAVPRYLIYDIIKFNAQPVGDCDFNIRLQCIEREIISPRHEKMKTGLIDK 179 (343)
T ss_dssp ------------------S-----------SEEEEEEEEEEEEBTTBCGGGSCHHHHHHHHHHHTHHHHHHHHHHSSCCT
T ss_pred ------------------C-----------cEeeEEEEEEEEeECCcCcccCCHHHHHHHHHHHhhhHHHHHhhcccccc
Confidence 1 1246999999988766442 14677777777642 210
Q ss_pred -CCCCc------eEeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCCce
Q psy11422 263 -ICGEY------SVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKE 329 (687)
Q Consensus 263 -~~~~~------~~~~~~~ei~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~~ 329 (687)
..+.. ......+.+.. . +....+.+..||+|++-.+ .+. ++....-+-||.+...
T Consensus 180 ~~~pf~vr~K~~~~~~~~~~ll~--~---~~~~~l~~~~dGlIf~~~~-~Y~------~G~~~~~lKwKp~~~~ 241 (343)
T 3rtx_A 180 TQEPFSVRPKQFFDINISRKLLE--G---NFAKEVSHEMDGLIFQPIG-KYK------PGRCDDILKWKPPSLN 241 (343)
T ss_dssp TTSSSEEEECCCEEGGGHHHHSC--C-------------CEEEEEESS-CCC------CEEEEEEEEECCSTTC
T ss_pred cCCCcEEEEEEeEehhhHHHHHh--h---hhHhhcCCCCCeEEEEECc-cCc------CCCCcceEEEecCcce
Confidence 01111 11122233221 0 1234678899999999877 432 2222344667766543
No 107
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=94.14 E-value=0.022 Score=52.23 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=40.7
Q ss_pred hHHHhcCChhhhhcccCccHHHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHHHHHHHHhhcCChHHHHhcCHHHHhcCC
Q psy11422 482 AVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIP 561 (687)
Q Consensus 482 i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~~Ak~La~~f~sld~l~~As~eeL~~I~ 561 (687)
.-||-+.+.++|..+||+|++.|++|++ +. .|.+ .|||.+++
T Consensus 54 kIniNtA~~~eL~~LpGiGp~~A~~II~------~G------------------------pF~s--------vedL~~V~ 95 (134)
T 1s5l_U 54 KIDLNNTNIAAFIQYRGLYPTLAKLIVK------NA------------------------PYES--------VEDVLNIP 95 (134)
T ss_dssp SEETTTSCGGGGGGSTTCTHHHHHHHHH------TC------------------------CCSS--------GGGGGGCT
T ss_pred eeeCcccCHHHHHHCCCCCHHHHHHHHH------cC------------------------CCCC--------HHHHHhCC
Confidence 3477778889999999999999999881 11 2553 36677777
Q ss_pred CCCHHHHHHHHHHH
Q psy11422 562 KIGSTTVKAFIKFI 575 (687)
Q Consensus 562 GIG~~~A~sI~~ff 575 (687)
|||+++.+.+..+.
T Consensus 96 GIg~k~~e~l~~~~ 109 (134)
T 1s5l_U 96 GLTERQKQILRENL 109 (134)
T ss_dssp TCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhh
Confidence 88877776665554
No 108
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=93.94 E-value=0.05 Score=47.47 Aligned_cols=50 Identities=16% Similarity=0.103 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 463 IGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 463 ~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
-+|+.....-|-.+| |.++.||...+.++|+++++||+|+.+.|.+.++.
T Consensus 29 L~LSvRs~NcLkrag-I~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~ 78 (98)
T 1coo_A 29 LELTVRSANCLKAEA-IHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS 78 (98)
T ss_dssp GTCCTTTHHHHHTTT-CCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHcC-CCcHHHHHhCCHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 367888888998887 79999999999999999999999999999988864
No 109
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=93.92 E-value=0.051 Score=57.78 Aligned_cols=63 Identities=16% Similarity=0.271 Sum_probs=47.6
Q ss_pred hhhhcccCccHHHHHHHHHHHHHcccCCHH------HHHHHc-CCCCCCHHHHHHHHh-hcCChHHHHhcC
Q psy11422 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFS------RFIYAL-GIRHVGETTAKELAN-YFKNLECMFKAT 553 (687)
Q Consensus 491 ~~L~~l~gfG~Ksa~~Ll~~Ie~sk~~~l~------r~L~aL-GIp~vG~~~Ak~La~-~f~sld~l~~As 553 (687)
++|..|||+|++.|++|.+-++.-+-..+. .++.-| .|||||+++|+.+-+ .+.|+++|..+.
T Consensus 57 ~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l~~~Gi~tledL~~a~ 127 (335)
T 2bcq_A 57 QEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQA 127 (335)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCTTHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHHHC
T ss_pred HHHhcCCCccHHHHHHHHHHHHcCCchHHHHHhhhhHHHHHHhcCCCcCHHHHHHHHHcCCCCHHHHHHHh
Confidence 458999999999999999988742211121 356666 999999999998865 467888888753
No 110
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=93.88 E-value=0.0044 Score=63.39 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=58.0
Q ss_pred CCccCCeEEEE-EcCCC-----cCCHHHHHHHHHhcCCEEcccccccc-----cEEEEcCCCCccHHHHHHcCCeEEeHH
Q psy11422 604 KNYLKEKIFVF-TGSLY-----AFKRNEAIILIENLGGKVVNFISKNT-----NYLVKGQKPGKKLEKAIKLNIKILDEK 672 (687)
Q Consensus 604 ~~~l~g~~vv~-TG~l~-----~~~R~e~~~~i~~~Gg~v~~sVsk~t-----~~LV~G~~~g~Kl~kA~~lgI~Ii~E~ 672 (687)
++.|+|.+||+ +|.+. ..+|++++.+|+++||++.......| +++|+ ++...|.+.+...|++||+.+
T Consensus 3 s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~-~~~t~k~~~~~~~~~~vV~p~ 81 (264)
T 1z56_C 3 SNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLIS-CKTTTECKALIDRGYDILHPN 81 (264)
T ss_dssp CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEE-CSCCGGGGGGTTTTCCCBCSS
T ss_pred cccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEe-cCCcHHHHHHHhCCCCEEech
Confidence 45799999977 66542 25899999999999998876555555 44555 456678888888889999999
Q ss_pred HHHHHHh
Q psy11422 673 NFVKIVK 679 (687)
Q Consensus 673 ~f~~~l~ 679 (687)
++.+.+.
T Consensus 82 Wv~dci~ 88 (264)
T 1z56_C 82 WVLDCIA 88 (264)
T ss_dssp TTHHHHS
T ss_pred HHHHHhh
Confidence 9998875
No 111
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=93.74 E-value=0.056 Score=46.95 Aligned_cols=31 Identities=23% Similarity=0.075 Sum_probs=22.6
Q ss_pred hHHHhcCChhhhhcccCccHHHHHHHHHHHH
Q psy11422 482 AVDLYKINFKNLLRLDRVSNKLANNILLAIQ 512 (687)
Q Consensus 482 i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie 512 (687)
+.||.+++.++|..++|+|++.|++|++..+
T Consensus 31 ~i~iN~a~~~~L~~ipGIG~~~A~~Il~~r~ 61 (98)
T 2edu_A 31 LDLLNEGSARDLRSLQRIGPKKAQLIVGWRE 61 (98)
T ss_dssp HHHHHHSCHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CeehhhCCHHHHHHCCCCCHHHHHHHHHHHH
Confidence 3467777777787888888888877777654
No 112
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=93.58 E-value=0.1 Score=45.27 Aligned_cols=42 Identities=17% Similarity=0.374 Sum_probs=28.3
Q ss_pred CCCCCCHHHHHHHHhhc---CChHHHHhcCHHHHhcCCCCCHHHHHHHHH
Q psy11422 527 GIRHVGETTAKELANYF---KNLECMFKATEEQLLNIPKIGSTTVKAFIK 573 (687)
Q Consensus 527 GIp~vG~~~Ak~La~~f---~sld~l~~As~eeL~~I~GIG~~~A~sI~~ 573 (687)
.|||||+++|+.|.+++ +.+ .+.++|.+++|||+++++.|..
T Consensus 44 ~ipGIG~~~A~~Il~~r~~~g~f-----~s~edL~~v~Gig~k~~~~l~~ 88 (98)
T 2edu_A 44 SLQRIGPKKAQLIVGWRELHGPF-----SQVEDLERVEGITGKQMESFLK 88 (98)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCCC-----SSGGGGGGSTTCCHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHhcCCc-----CCHHHHHhCCCCCHHHHHHHHH
Confidence 46777777777777665 222 4566677777777777777654
No 113
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=93.55 E-value=0.36 Score=48.03 Aligned_cols=82 Identities=24% Similarity=0.313 Sum_probs=51.9
Q ss_pred HHHHHHHHCCCCCC------hHHHhcCChhhhhc---ccCccHHHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHHHHHH
Q psy11422 468 KMIEKLVNANIVVT------AVDLYKINFKNLLR---LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKE 538 (687)
Q Consensus 468 k~i~~L~~~g~I~~------i~DL~~L~~~~L~~---l~gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~~Ak~ 538 (687)
+.+..|.+.|+ -+ +++|..++.++|.. --||...+|.+|.+.-+.
T Consensus 50 ~~~~~L~~~~~-pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~~KA~~L~~~a~~------------------------- 103 (218)
T 1pu6_A 50 KSLENLKNAFI-LENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGN------------------------- 103 (218)
T ss_dssp HHHHHHHHTTS-SCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHccC-CCccccccHHHHHhCCHHHHHHHHHHCCCcHHHHHHHHHHHHH-------------------------
Confidence 45566666655 35 88999988877743 247887788777764332
Q ss_pred HHhhcCChHHH-HhcCHHHHhcCCCCCHHHHHHHHHHH
Q psy11422 539 LANYFKNLECM-FKATEEQLLNIPKIGSTTVKAFIKFI 575 (687)
Q Consensus 539 La~~f~sld~l-~~As~eeL~~I~GIG~~~A~sI~~ff 575 (687)
+.+.++.++.+ ...+.++|.+++|||+++|..|..|-
T Consensus 104 i~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~a 141 (218)
T 1pu6_A 104 ILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYA 141 (218)
T ss_dssp HHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHhcCChhhccchHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 12222222222 12356788899999999998887654
No 114
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=93.42 E-value=0.23 Score=49.94 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=51.8
Q ss_pred HHHHHHHHC-CC-CCChHHHhcCChhhhhcccCccHHHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHHHHHHHHhhcCC
Q psy11422 468 KMIEKLVNA-NI-VVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN 545 (687)
Q Consensus 468 k~i~~L~~~-g~-I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~~Ak~La~~f~s 545 (687)
+.+..|++. |. --++.+|..++.++|..+ ||+..+|..|.+.-+.. .+.+.+
T Consensus 71 ~~~~rL~~~~G~~fPtp~~la~~~~e~Lr~~-G~~~~KA~~I~~~A~~i-------------------------~~~~~~ 124 (233)
T 2h56_A 71 AIYGRVEQLVGGALEKPEQLYRVSDEALRQA-GVSKRKIEYIRHVCEHV-------------------------ESGRLD 124 (233)
T ss_dssp HHHHHHHHHHTSCCCCTHHHHTSCHHHHHHT-TCCHHHHHHHHHHHHHH-------------------------HTTSSC
T ss_pred HHHHHHHHHhCCCCCCHHHHHcCCHHHHHHc-CCCHHHHHHHHHHHHHH-------------------------HhCCCC
Confidence 455556554 42 138889998888888665 88888888777654322 222223
Q ss_pred hHHHHhc----CHHHHhcCCCCCHHHHHHHHHH
Q psy11422 546 LECMFKA----TEEQLLNIPKIGSTTVKAFIKF 574 (687)
Q Consensus 546 ld~l~~A----s~eeL~~I~GIG~~~A~sI~~f 574 (687)
++.+... ..++|.+++|||+++|+.|.-|
T Consensus 125 ~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~ 157 (233)
T 2h56_A 125 FTELEGAEATTVIEKLTAIKGIGQWTAEMFMMF 157 (233)
T ss_dssp HHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 3333222 2467888888888888888776
No 115
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=93.32 E-value=0.25 Score=49.97 Aligned_cols=113 Identities=20% Similarity=0.285 Sum_probs=75.3
Q ss_pred CHHHHHhhhhhcccccccccCCCCHHHHHHHHHCCCCCChHHHhcC----ChhhhhcccCccHHHHHHHHHHHHH---cc
Q psy11422 443 CIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI----NFKNLLRLDRVSNKLANNILLAIQK---SK 515 (687)
Q Consensus 443 C~~q~~~~i~~F~sr~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L----~~~~L~~l~gfG~Ksa~~Ll~~Ie~---sk 515 (687)
.|.-.-.-|.||-|.. .|-.-.-.-|+.+|++|-++. +-|.. .-.+|.+-+|.|.|+|+.|+.++-+ .|
T Consensus 363 spdaadeliehfesia--gilatdleeiermyeegrlse--eayraaveiqlaeltkkegvgrktaerllrafgnpervk 438 (519)
T 2csb_A 363 SPDAADELIEHFESIA--GILATDLEEIERMYEEGRLSE--EAYRAAVEIQLAELTKKEGVGRKTAERLLRAFGNPERVK 438 (519)
T ss_dssp CHHHHHHHHHHHSSHH--HHHTSCHHHHHHHHHHTSSCH--HHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHSSHHHHH
T ss_pred CcchHHHHHHHHHHHH--HHHhccHHHHHHHHHcccccH--HHHHHHHHHHHHHHhhhcccchhHHHHHHHHhCCHHHHH
Confidence 5666778899998843 444455677899999997653 34442 3456788899999999999988732 11
Q ss_pred ----cCCH----------HHHHHHc--------CCCCCCHHHHHHHHhhcCChHHHHhcCHHHHhc
Q psy11422 516 ----LTTF----------SRFIYAL--------GIRHVGETTAKELANYFKNLECMFKATEEQLLN 559 (687)
Q Consensus 516 ----~~~l----------~r~L~aL--------GIp~vG~~~Ak~La~~f~sld~l~~As~eeL~~ 559 (687)
.-.. .|+|.+| .|+||....|.+|+++||....+..|..++|..
T Consensus 439 qlarefeieklasvegvgervlrslvpgyaslisirgidreraerllkkyggyskvreagveelre 504 (519)
T 2csb_A 439 QLAREFEIEKLASVEGVGERVLRSLVPGYASLISIRGIDRERAERLLKKYGGYSKVREAGVEELRE 504 (519)
T ss_dssp HHHHTTCHHHHHTSTTCSHHHHHHHSTTHHHHHTSTTCCHHHHHHHHHHHTSHHHHHTSCHHHHHH
T ss_pred HHHHHHhHHHHhhccchHHHHHHHhccchhhheeeccccHHHHHHHHHHhCChhHHHHhhHHHHHH
Confidence 1111 1344332 567777777777777777777777777666653
No 116
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=93.04 E-value=0.081 Score=56.76 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=48.1
Q ss_pred ccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHHc
Q psy11422 461 NIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKS 514 (687)
Q Consensus 461 ~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~s 514 (687)
.||+||+++++.|+++- .|+..|++.+.++|.+++|+|++.|..|.+.+..-
T Consensus 319 ~IPrl~~~iae~Lv~~F--GsLq~Il~AS~eEL~~VeGIGe~rAr~IregL~r~ 370 (377)
T 3c1y_A 319 TVARIPLSIGYNVVRMF--KTLDQISKASVEDLKKVEGIGEKRARAISESISSL 370 (377)
T ss_dssp HTSCCCHHHHHHHHHHH--CSHHHHTTCCHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHh--CCHHHHHhCCHHHHHhccCccHHHHHHHHHHHHHH
Confidence 49999999999999975 49999999999999999999999999999998764
No 117
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=92.97 E-value=0.15 Score=54.25 Aligned_cols=62 Identities=23% Similarity=0.286 Sum_probs=47.2
Q ss_pred hhhhcccCccHHHHHHHHHHHHHcccC--------C-HHHHHHHcCCCCCCHHHHHHHHhh-cCChHHHHhc
Q psy11422 491 KNLLRLDRVSNKLANNILLAIQKSKLT--------T-FSRFIYALGIRHVGETTAKELANY-FKNLECMFKA 552 (687)
Q Consensus 491 ~~L~~l~gfG~Ksa~~Ll~~Ie~sk~~--------~-l~r~L~aLGIp~vG~~~Ak~La~~-f~sld~l~~A 552 (687)
.+|..|||+|++.|++|.+-++.-+-. + ..-+..=+.|||||+++|+.+-+. +.|+++|..+
T Consensus 57 ~~l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~~Gi~tledL~~a 128 (335)
T 2fmp_A 57 AEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKN 128 (335)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHTC
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHHh
Confidence 468999999999999999988743211 1 223444469999999999988754 6789999886
No 118
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=92.89 E-value=0.047 Score=47.63 Aligned_cols=56 Identities=20% Similarity=0.317 Sum_probs=42.3
Q ss_pred HHHhcCChhhhhcccCccHHHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHHHHHHHHhhcCChHHHHhcCHHHHhcCCC
Q psy11422 483 VDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPK 562 (687)
Q Consensus 483 ~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~~Ak~La~~f~sld~l~~As~eeL~~I~G 562 (687)
-||-+++.++|..+||+|++.|++|++ + | .|.+ .++|.+++|
T Consensus 18 vdiNtAs~~eL~~lpGIG~~~A~~IV~------~---------------G---------pF~s--------~edL~~V~G 59 (97)
T 3arc_U 18 IDLNNTNIAAFIQYRGLYPTLAKLIVK------N---------------A---------PYES--------VEDVLNIPG 59 (97)
T ss_dssp EETTTSCGGGGGGSTTCTTHHHHHHHH------H---------------C---------CCSS--------GGGGGGCTT
T ss_pred eeCCcCCHHHHhHCCCCCHHHHHHHHH------c---------------C---------CCCC--------HHHHHhccC
Confidence 467777888898999999998888886 0 1 3553 467778888
Q ss_pred CCHHHHHHHHHHHc
Q psy11422 563 IGSTTVKAFIKFIN 576 (687)
Q Consensus 563 IG~~~A~sI~~ff~ 576 (687)
||+++.+.+..++.
T Consensus 60 ig~~~~e~l~~~l~ 73 (97)
T 3arc_U 60 LTERQKQILRENLE 73 (97)
T ss_dssp CCHHHHHHHHHTGG
T ss_pred CCHHHHHHHHHHhc
Confidence 88888888877653
No 119
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=92.69 E-value=0.021 Score=57.35 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=0.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQ 512 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie 512 (687)
..+|+|+|+++.++|.+.- .|+..|...+.++|.++ |+|++.|++|++.+.
T Consensus 175 L~~IpGIG~k~ak~Ll~~F--GSl~~i~~As~eeL~~V-GIG~~~A~~I~~~f~ 225 (226)
T 3c65_A 175 LDDIPGVGEKRKKALLNYF--GSVKKMKEATVEELQRA-NIPRAVAEKIYEKLH 225 (226)
T ss_dssp ------------------------------------------------------
T ss_pred ccccCCCCHHHHHHHHHHh--CCHHHHHhCCHHHHHHc-CCCHHHHHHHHHHhh
Confidence 4579999999999999863 57888999999999999 999999999988763
No 120
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=92.06 E-value=0.17 Score=54.62 Aligned_cols=101 Identities=15% Similarity=0.106 Sum_probs=63.1
Q ss_pred CHHHHHhhhhhcccccccccCCCCHHHHHHHHHCCCCCChHHHh-cC-ChhhhhcccCccHHHHHHHHHHHHHcccCCHH
Q psy11422 443 CIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY-KI-NFKNLLRLDRVSNKLANNILLAIQKSKLTTFS 520 (687)
Q Consensus 443 C~~q~~~~i~~F~sr~~l~I~GLG~k~i~~L~~~g~I~~i~DL~-~L-~~~~L~~l~gfG~Ksa~~Ll~~Ie~sk~~~l~ 520 (687)
-.+..++.|.. .|.+.| .+-.+...-.+- ..+..+= .+ +.++|.+|||+|++.|++|.+-++.-+-..+.
T Consensus 38 ~i~~~L~~ia~-----~~e~~g-~~~rv~AYr~Aa--~~l~~l~~~i~~~~~l~~lpGIG~~ia~kI~E~l~tG~~~~le 109 (381)
T 1jms_A 38 LFTDALDILAE-----NDELRE-NEGSCLAFMRAS--SVLKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAK 109 (381)
T ss_dssp HHHHHHHHHHH-----HHHHTT-CHHHHHHHHHHH--HHHHTCSSCCCSGGGGTTCSSCCHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHH-----HHHhhC-CcHHHHHHHHHH--HHHHhCCccccCHHHHhcCCCCcHHHHHHHHHHHHcCCcHHHH
Confidence 34555566654 456778 777766654421 1111110 12 13469999999999999999988753322222
Q ss_pred H---------HHHHcCCCCCCHHHHHHHHhh-cCChHHHHh
Q psy11422 521 R---------FIYALGIRHVGETTAKELANY-FKNLECMFK 551 (687)
Q Consensus 521 r---------~L~aLGIp~vG~~~Ak~La~~-f~sld~l~~ 551 (687)
. +..=++|+|||+++|+.+-+. +.|+++|..
T Consensus 110 ~l~~d~~~~~l~~l~~I~GvGpk~a~~ly~~Gi~tledL~~ 150 (381)
T 1jms_A 110 AVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQS 150 (381)
T ss_dssp HHHHCHHHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred HHhcCcchhHHHHHHccCCCCHHHHHHHHHcCCCcHHHHHh
Confidence 2 233359999999999988754 667777764
No 121
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=92.01 E-value=0.48 Score=47.31 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=51.2
Q ss_pred HHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHHHHHHHHhhcCCh
Q psy11422 467 KKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546 (687)
Q Consensus 467 ~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~~Ak~La~~f~sl 546 (687)
.+.+..|.+.-.--++++|..++.++|..+ ||+..+|..|.+.-+...+ ...++
T Consensus 80 ~~~~~rL~~~~G~ptp~~la~~~~e~Lr~~-G~~~~KA~~i~~lA~~~~~-------------------------g~~~l 133 (225)
T 2yg9_A 80 QAIYGRLEGLPGGVVPAALLKVSGDDLRGV-GLSWAKVRTVQAAAAAAVS-------------------------GQIDF 133 (225)
T ss_dssp HHHHHHHHTSTTCSCHHHHTTSCHHHHHHT-TCCHHHHHHHHHHHHHHHT-------------------------TSSCG
T ss_pred HHHHHHHHHHhCcCCHHHHHcCCHHHHHHC-CCcHHHHHHHHHHHHHHHh-------------------------CCcCH
Confidence 344555555422258888888888888665 8888778777664332211 11123
Q ss_pred HHHHhcC----HHHHhcCCCCCHHHHHHHHHHH
Q psy11422 547 ECMFKAT----EEQLLNIPKIGSTTVKAFIKFI 575 (687)
Q Consensus 547 d~l~~As----~eeL~~I~GIG~~~A~sI~~ff 575 (687)
+.+...+ .++|.+++|||+++|+.+.-|-
T Consensus 134 ~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~ 166 (225)
T 2yg9_A 134 AHLSGQPDELVIAELVQLPGIGRWTAEMFLLFA 166 (225)
T ss_dssp GGCTTSCHHHHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 3333222 3578888888888888887763
No 122
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=91.93 E-value=0.71 Score=46.36 Aligned_cols=82 Identities=15% Similarity=0.159 Sum_probs=54.2
Q ss_pred HHHHHHHC-CC---CCChHHHhcCChhhhhcccCccHHHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHHHHHHHHhhcC
Q psy11422 469 MIEKLVNA-NI---VVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFK 544 (687)
Q Consensus 469 ~i~~L~~~-g~---I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~~Ak~La~~f~ 544 (687)
.+.+|.+. |- .-++++|..++.++|..+ ||+..+|..|.+.-+. +.. | .++
T Consensus 81 ~~~rL~~~~G~~~~fPtpe~la~~~~e~Lr~~-Gl~~~Ka~~l~~~A~~---------~~~-g--------------~~p 135 (232)
T 4b21_A 81 IINKFCTQCSDNDEFPTPKQIMETDVETLHEC-GFSKLKSQEIHIVAEA---------ALN-K--------------QIP 135 (232)
T ss_dssp HHHHHHHHHCSSSSCCCHHHHHTSCHHHHHTT-TCCHHHHHHHHHHHHH---------HHT-T--------------CSC
T ss_pred HHHHHHHHhCCCCCCCCHHHHHcCCHHHHHHc-CCcHHHHHHHHHHHHH---------HHh-C--------------CCC
Confidence 44455554 31 368999999998888775 9998888877764322 111 0 122
Q ss_pred ChHHHHhcC----HHHHhcCCCCCHHHHHHHHHHH
Q psy11422 545 NLECMFKAT----EEQLLNIPKIGSTTVKAFIKFI 575 (687)
Q Consensus 545 sld~l~~As----~eeL~~I~GIG~~~A~sI~~ff 575 (687)
+++.+...+ .++|.+++|||+.+|+.|.-|-
T Consensus 136 ~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~a 170 (232)
T 4b21_A 136 SKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIFT 170 (232)
T ss_dssp CHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHHh
Confidence 344444333 4679999999999999988764
No 123
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=91.86 E-value=0.21 Score=53.50 Aligned_cols=100 Identities=12% Similarity=0.095 Sum_probs=63.1
Q ss_pred CHHHHHhhhhhcccccccccCCCCHHHHHHHHHCCCCCChHHHh-cC-ChhhhhcccCccHHHHHHHHHHHHHcccCCHH
Q psy11422 443 CIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY-KI-NFKNLLRLDRVSNKLANNILLAIQKSKLTTFS 520 (687)
Q Consensus 443 C~~q~~~~i~~F~sr~~l~I~GLG~k~i~~L~~~g~I~~i~DL~-~L-~~~~L~~l~gfG~Ksa~~Ll~~Ie~sk~~~l~ 520 (687)
-.+..++.|.. .|.+.| .+-.+...-.+- ..+..+= .+ +.++|..|||+|++.|++|.+-++.-+-..+.
T Consensus 19 ~i~~~L~~ia~-----~~e~~g-~~~r~~AYr~Aa--~~l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le 90 (360)
T 2ihm_A 19 LLSEALETLAE-----AAGFEA-NEGRLLSFSRAA--SVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVK 90 (360)
T ss_dssp HHHHHHHHHHH-----HHHHTT-CHHHHHHHHHHH--HHHHHCSSCCCSGGGGTTCTTCCHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHHHHHHHHH-----HHHHcC-CcHHHHHHHHHH--HHHHhCCcccCCHHHHhcCCCCCHHHHHHHHHHHHcCChHHHH
Confidence 34555666654 456777 777766654321 1111111 12 23469999999999999999988753322222
Q ss_pred H---------HHHHcCCCCCCHHHHHHHHhh-cCChHHHH
Q psy11422 521 R---------FIYALGIRHVGETTAKELANY-FKNLECMF 550 (687)
Q Consensus 521 r---------~L~aLGIp~vG~~~Ak~La~~-f~sld~l~ 550 (687)
. +..=++|||||+++|+.+-+. +.|+++|.
T Consensus 91 ~L~~d~~~~~l~~l~~I~GvG~kta~~l~~~Gi~tledL~ 130 (360)
T 2ihm_A 91 QVRCSERYQTMKLFTQVFGVGVKTANRWYQEGLRTLDELR 130 (360)
T ss_dssp HHHHSHHHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred HHhcccchHHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 2 222359999999999988654 66787777
No 124
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=91.42 E-value=0.36 Score=39.43 Aligned_cols=52 Identities=29% Similarity=0.294 Sum_probs=42.7
Q ss_pred HHHHHcCCCCCCHHHHHHHHh-hcCChHHHHhcCHHHHhcCCCCCHHHHHHHHHHH
Q psy11422 521 RFIYALGIRHVGETTAKELAN-YFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575 (687)
Q Consensus 521 r~L~aLGIp~vG~~~Ak~La~-~f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ff 575 (687)
-|+..+|| ++..+++|.+ -|.|++.+..++.++|..|+||++.+++.|++--
T Consensus 7 ~f~~~lgI---~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A 59 (70)
T 1u9l_A 7 TFTKYLDI---DEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERA 59 (70)
T ss_dssp HHHHHHTC---CHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHhCCC---CHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHH
Confidence 45556654 4677877765 5999999999999999999999999999988643
No 125
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=91.19 E-value=0.28 Score=44.97 Aligned_cols=46 Identities=9% Similarity=0.167 Sum_probs=36.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQ 512 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie 512 (687)
...++|+||+++++.+++|--+++ +||.+++|+|+|..+.|-+...
T Consensus 65 L~~LpGiGp~~A~~II~~GpF~sv--------edL~~V~GIg~k~~e~l~~~~~ 110 (134)
T 1s5l_U 65 FIQYRGLYPTLAKLIVKNAPYESV--------EDVLNIPGLTERQKQILRENLE 110 (134)
T ss_dssp GGGSTTCTHHHHHHHHHTCCCSSG--------GGGGGCTTCCHHHHHHHHHHHT
T ss_pred HHHCCCCCHHHHHHHHHcCCCCCH--------HHHHhCCCCCHHHHHHHHHhhc
Confidence 346999999999999999887776 4556689999998876655443
No 126
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.19 E-value=0.54 Score=41.03 Aligned_cols=71 Identities=11% Similarity=0.138 Sum_probs=54.9
Q ss_pred CCCccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccc-----------cccccEEEEcCCCCccHHHHHHcCCeEEeH
Q psy11422 603 NKNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFI-----------SKNTNYLVKGQKPGKKLEKAIKLNIKILDE 671 (687)
Q Consensus 603 ~~~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sV-----------sk~t~~LV~G~~~g~Kl~kA~~lgI~Ii~E 671 (687)
..+.|+|++|++.+. .+|++++.+|+.+||+|.... ....+++|+....-.+ +..+..+|..
T Consensus 9 ~~~LF~g~~F~i~~e---~p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~~~----~~~~r~~VqP 81 (100)
T 2ep8_A 9 HKKLFEGLKFFLNRE---VPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQQT----SVIGRCYVQP 81 (100)
T ss_dssp SCCTTSSCEEECCSS---SCHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTTSC----CBTTBEEECT
T ss_pred hHHHcCCcEEEEecC---CCHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccchhh----hcCCCeEEcc
Confidence 345799999999775 489999999999999998642 4688899887533222 2246789999
Q ss_pred HHHHHHHhc
Q psy11422 672 KNFVKIVKG 680 (687)
Q Consensus 672 ~~f~~~l~~ 680 (687)
.+..+.++.
T Consensus 82 qWV~Dcin~ 90 (100)
T 2ep8_A 82 QWVFDSVNA 90 (100)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHhc
Confidence 999988764
No 127
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=91.06 E-value=0.18 Score=43.91 Aligned_cols=48 Identities=8% Similarity=0.162 Sum_probs=38.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
..+.++|+|+++++++++.|-.+++ ++|.+++|+|++..++|...+..
T Consensus 27 eL~~lpGIG~~~A~~IV~~GpF~s~--------edL~~V~Gig~~~~e~l~~~l~~ 74 (97)
T 3arc_U 27 AFIQYRGLYPTLAKLIVKNAPYESV--------EDVLNIPGLTERQKQILRENLEH 74 (97)
T ss_dssp GGGGSTTCTTHHHHHHHHHCCCSSG--------GGGGGCTTCCHHHHHHHHHTGGG
T ss_pred HHhHCCCCCHHHHHHHHHcCCCCCH--------HHHHhccCCCHHHHHHHHHHhce
Confidence 3456999999999999998876665 55667899999999888776653
No 128
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=90.53 E-value=0.12 Score=55.88 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=36.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
.|+|+|+|+|++.+||++ .|+|++||.. +-|.|..++++.+|+.
T Consensus 123 l~~I~GvGpk~a~~ly~~-Gi~tledL~~----------~~g~kl~~~q~~Gl~~ 166 (381)
T 1jms_A 123 FTSVFGVGLKTAEKWFRM-GFRTLSKIQS----------DKSLRFTQMQKAGFLY 166 (381)
T ss_dssp HHTSTTCCHHHHHHHHHT-TCCSHHHHHH----------CSSCCCCHHHHHHHHT
T ss_pred HHccCCCCHHHHHHHHHc-CCCcHHHHHh----------CcccchHHHHHHHHHH
Confidence 468999999999999999 5799999986 2256777777777764
No 129
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=89.97 E-value=0.23 Score=44.57 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHhh-cCChHHHHhcCHHHHhcCCCCCHHHHHHHHHHH
Q psy11422 530 HVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575 (687)
Q Consensus 530 ~vG~~~Ak~La~~-f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ff 575 (687)
|||+..+++|.+. |.|++.+..++.++|.+++|||+..|+.|.+.-
T Consensus 32 GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA 78 (114)
T 1b22_A 32 GINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEA 78 (114)
T ss_dssp TCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHH
Confidence 7889999988864 899999999999999999999999999988753
No 130
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=89.19 E-value=0.17 Score=50.44 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=43.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccH-HHHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSN-KLANNILLAI 511 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~-Ksa~~Ll~~I 511 (687)
..+|+|+|+++.++|.+.- .|+..|..++.++|.++ +|+ +.|++|++.+
T Consensus 170 LdgIpGIG~k~ak~Ll~~F--gSl~~i~~As~EeL~~V--IG~~~~A~~I~~~f 219 (220)
T 2nrt_A 170 LDNVPGIGPIRKKKLIEHF--GSLENIRSASLEEIARV--IGSTEIARRVLDIL 219 (220)
T ss_dssp HTTSTTCCHHHHHHHHHHH--CSHHHHHTSCHHHHHHH--HTCHHHHHHHHHHC
T ss_pred ccCCCCcCHHHHHHHHHHc--CCHHHHHhCCHHHHHHH--hChHHHHHHHHHHh
Confidence 4579999999999999963 48999999999999999 999 9999998754
No 131
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=89.16 E-value=0.38 Score=51.58 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=37.9
Q ss_pred HHcCCCCCCHHHHHHHHhh--cCChHHHHhc-------CHHHHhcCCCCCHHHHHHHHH
Q psy11422 524 YALGIRHVGETTAKELANY--FKNLECMFKA-------TEEQLLNIPKIGSTTVKAFIK 573 (687)
Q Consensus 524 ~aLGIp~vG~~~Ak~La~~--f~sld~l~~A-------s~eeL~~I~GIG~~~A~sI~~ 573 (687)
....|||||+++|++|.+. -|.+..+... ...+|.+|+|||+++|..+++
T Consensus 62 ~l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~~ 120 (360)
T 2ihm_A 62 QLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWYQ 120 (360)
T ss_dssp GGTTCTTCCHHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHHH
Confidence 3568999999999988764 3555544322 246899999999999998865
No 132
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=89.02 E-value=0.34 Score=51.39 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=28.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhh
Q psy11422 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493 (687)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L 493 (687)
..++|+|+||+++.+||++ .|+|++||... ...|
T Consensus 99 ~l~~V~GiGpk~a~~l~~~-Gi~tledL~~a-~~~l 132 (335)
T 2fmp_A 99 FLTRVSGIGPSAARKFVDE-GIKTLEDLRKN-EDKL 132 (335)
T ss_dssp HHTTSTTCCHHHHHHHHHT-TCCSHHHHHTC-GGGS
T ss_pred HHhCCCCCCHHHHHHHHHc-CCCCHHHHHHh-hhhh
Confidence 3578999999999999999 57999999986 4333
No 133
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=88.77 E-value=0.19 Score=51.03 Aligned_cols=77 Identities=13% Similarity=0.145 Sum_probs=41.8
Q ss_pred CCccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCCCC------ccHHHHHH---------cCC-e
Q psy11422 604 KNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPG------KKLEKAIK---------LNI-K 667 (687)
Q Consensus 604 ~~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g------~Kl~kA~~---------lgI-~ 667 (687)
...|.|.+|+|.|......++-+..+|..+||++++.+++.|+.+|++.... .++++... .++ .
T Consensus 158 ~~lF~g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (264)
T 1z56_C 158 LFLFSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTIPKIAR 237 (264)
T ss_dssp CC--------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSCCCCCE
T ss_pred hhhhCCeEEEEecCCCchhHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhhcccccccCCCCE
Confidence 4468999999999754445566788899999999999998888888865321 23333211 244 9
Q ss_pred EEeHHHHHHHHhc
Q psy11422 668 ILDEKNFVKIVKG 680 (687)
Q Consensus 668 Ii~E~~f~~~l~~ 680 (687)
|++.+++.+.+..
T Consensus 238 iV~~~Wv~dci~~ 250 (264)
T 1z56_C 238 VVAPEWVDHSINE 250 (264)
T ss_dssp EECTHHHHHHHTT
T ss_pred EecHHHHHHHHHc
Confidence 9999999998864
No 134
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=88.71 E-value=0.55 Score=48.83 Aligned_cols=56 Identities=20% Similarity=0.362 Sum_probs=50.1
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHHc
Q psy11422 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKS 514 (687)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~s 514 (687)
+..+++|+++.++.+|-++|+ .|+.|+..+...+|..+.|+.++.|.+++....+.
T Consensus 4 ~~~~l~gi~~~~~~kL~~~gi-~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~~~ 59 (322)
T 2i1q_A 4 NLTDLPGVGPSTAEKLVEAGY-IDFMKIATATVGELTDIEGISEKAAAKMIMGARDL 59 (322)
T ss_dssp -CTTSTTCCHHHHHHHHHHTC-CSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred cHhhcCCCCHHHHHHHHHcCC-CcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHHHh
Confidence 466789999999999999994 89999999999999999999999999999887553
No 135
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=87.61 E-value=1.5 Score=43.50 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=47.0
Q ss_pred HHHHHHHCCCCCChHHHhcCChhhhhcc---cCccHHHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHHHHHHHHhhcC-
Q psy11422 469 MIEKLVNANIVVTAVDLYKINFKNLLRL---DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFK- 544 (687)
Q Consensus 469 ~i~~L~~~g~I~~i~DL~~L~~~~L~~l---~gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~~Ak~La~~f~- 544 (687)
.+..|++. .-++++|..++.++|.++ -||...+|.+|.+.-+... +.|+
T Consensus 56 ~~~~l~~~--fptp~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~~i~-------------------------~~~~g 108 (221)
T 1kea_A 56 IYDKFFVK--YKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVI-------------------------NDYGG 108 (221)
T ss_dssp HHHHHHHH--CCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHH-------------------------HHHTT
T ss_pred HHHHHHHH--CCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-------------------------HHhCC
Confidence 33444443 258888888887777332 2777777777766543211 1111
Q ss_pred ChHHHHhcCHHHHhcCCCCCHHHHHHHHHHH
Q psy11422 545 NLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575 (687)
Q Consensus 545 sld~l~~As~eeL~~I~GIG~~~A~sI~~ff 575 (687)
.++ .+.++|.+++|||+++|..|..|-
T Consensus 109 ~~p----~~~~~L~~lpGIG~~TA~~il~~~ 135 (221)
T 1kea_A 109 RVP----RNRKAILDLPGVGKYTCAAVMCLA 135 (221)
T ss_dssp SCC----SCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred Cch----HHHHHHHhCCCCcHHHHHHHHHHh
Confidence 111 346788889999999998887764
No 136
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=87.32 E-value=1.3 Score=45.96 Aligned_cols=68 Identities=18% Similarity=0.149 Sum_probs=45.7
Q ss_pred CChHHHhcCChhhhhcccCccHHHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHHHHHHHHhhcCChHHHHhcC----HH
Q psy11422 480 VTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT----EE 555 (687)
Q Consensus 480 ~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~~Ak~La~~f~sld~l~~As----~e 555 (687)
-++++|..++.++|..+ |+|- .|..|.+.- +.+.+...+++.+...+ .+
T Consensus 159 Ptpe~la~~~~e~L~~~-g~g~-Ra~~I~~~A-------------------------~~i~~g~~~l~~l~~~~~~~~~~ 211 (290)
T 3i0w_A 159 PTVDKLHEFTEKDFEEC-TAGF-RAKYLKDTV-------------------------DRIYNGELNLEYIKSLNDNECHE 211 (290)
T ss_dssp CCHHHHTTCCHHHHHHT-TCGG-GHHHHHHHH-------------------------HHHHTTSSCHHHHHHSCHHHHHH
T ss_pred CcHHHHHCCCHHHHHHc-CCch-HHHHHHHHH-------------------------HHHHhCCCCHHHHhcCCHHHHHH
Confidence 58899988988888885 7886 466666532 22222223344443333 46
Q ss_pred HHhcCCCCCHHHHHHHHHH
Q psy11422 556 QLLNIPKIGSTTVKAFIKF 574 (687)
Q Consensus 556 eL~~I~GIG~~~A~sI~~f 574 (687)
+|.+++|||+++|+.|.-|
T Consensus 212 ~L~~lpGIG~~TA~~ill~ 230 (290)
T 3i0w_A 212 ELKKFMGVGPQVADCIMLF 230 (290)
T ss_dssp HHTTSTTCCHHHHHHHHHH
T ss_pred HHHhCCCcCHHHHHHHHHH
Confidence 7889999999999988776
No 137
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=87.27 E-value=1.4 Score=44.08 Aligned_cols=74 Identities=14% Similarity=0.092 Sum_probs=55.1
Q ss_pred CccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccc----cccEEEEcCC------CCccHHHHHHcCCeEEeHHHH
Q psy11422 605 NYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISK----NTNYLVKGQK------PGKKLEKAIKLNIKILDEKNF 674 (687)
Q Consensus 605 ~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk----~t~~LV~G~~------~g~Kl~kA~~lgI~Ii~E~~f 674 (687)
..|.|.+|+|++.- ...+.++.+|+..||+|..+.+. ..+.++++.+ ...++..+.+.||+|++.+.+
T Consensus 134 ~lF~g~~v~l~~~~--~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~ewl 211 (235)
T 3al2_A 134 GAFSGWKVILHVDQ--SREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTEYI 211 (235)
T ss_dssp STTTTCEEEEECCH--HHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC--------CCCHHHHHHTTCEEEETHHH
T ss_pred CCCCCcEEEEecCC--CcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccchhHHHHHHHHcCCcEEcHHHH
Confidence 57999999999973 35688999999999999876432 2234444431 124677788889999999999
Q ss_pred HHHHhc
Q psy11422 675 VKIVKG 680 (687)
Q Consensus 675 ~~~l~~ 680 (687)
++.+-.
T Consensus 212 ld~i~~ 217 (235)
T 3al2_A 212 ADYLMQ 217 (235)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 988753
No 138
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=86.99 E-value=0.69 Score=53.69 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=45.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAI 511 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~I 511 (687)
.|.|||+|..++.+|+++| ++|+.||-.++.++|..++++|++.++.+...+
T Consensus 648 L~qlp~v~~~rar~L~~~G-~~s~~dl~~~~~~~l~~~~~~~~~i~~~~~~~~ 699 (720)
T 2zj8_A 648 LMQLPLVGRRRARALYNSG-FRSIEDISQARPEELLKIEGIGVKTVEAIFKFL 699 (720)
T ss_dssp GTTSTTCCHHHHHHHHTTT-CCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred hhhCCCCCHHHHHHHHHcC-CCCHHHHHhCCHHHHHHhHhHHHHHHHHHHHhc
Confidence 5789999999999999988 599999999999999999999988877666554
No 139
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=86.84 E-value=1.3 Score=37.41 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=47.6
Q ss_pred ccc-CCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 460 MNI-IGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 460 l~I-~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
.+. |||.+..++.|-.++ |.|..|++.++..+|.++-|.+-+.+..|.+.+.+
T Consensus 6 ~~~~p~Lse~~~~~L~~~~-I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~~ 59 (83)
T 2kz3_A 6 VGLCPGLTEEMIQLLRSHR-IKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLA 59 (83)
T ss_dssp TTSSTTCCHHHHHHHHHTT-CCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHCC-CCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 566 999999999998888 69999999999999999999999999888887754
No 140
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=86.67 E-value=0.68 Score=40.74 Aligned_cols=77 Identities=6% Similarity=-0.000 Sum_probs=53.7
Q ss_pred CCccCCeEEEEEcC-CCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCCCCcc-HH---HHHH--cCCeEEeHHHHHH
Q psy11422 604 KNYLKEKIFVFTGS-LYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKK-LE---KAIK--LNIKILDEKNFVK 676 (687)
Q Consensus 604 ~~~l~g~~vv~TG~-l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g~K-l~---kA~~--lgI~Ii~E~~f~~ 676 (687)
...|.|.+|.|--. +....|+-....+..+||+++++++.+++.+|+.+..+.+ .. +++. .++.|++++++.+
T Consensus 9 ~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~s~~~~l~~l~~~~l~~~~~iV~~~Wv~d 88 (106)
T 2jw5_A 9 EEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLPPGAQLVKSAWLSL 88 (106)
T ss_dssp GGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSSSCHHHHHHHTTCSSCCSSCEEEEHHHHHH
T ss_pred cCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEcCCCCHHHHHHHHhhcccCCCcEEecCchHHH
Confidence 45688888887321 2223455567799999999999999999999997544311 11 1111 2578999999999
Q ss_pred HHhc
Q psy11422 677 IVKG 680 (687)
Q Consensus 677 ~l~~ 680 (687)
.+..
T Consensus 89 ci~~ 92 (106)
T 2jw5_A 89 CLQE 92 (106)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 8864
No 141
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=86.41 E-value=0.75 Score=48.76 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=46.5
Q ss_pred ccHHHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHHHHHHHHhh--cCChHHHHhcC-----HHHHhcCCCCCHHHHHHH
Q psy11422 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY--FKNLECMFKAT-----EEQLLNIPKIGSTTVKAF 571 (687)
Q Consensus 499 fG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~~Ak~La~~--f~sld~l~~As-----~eeL~~I~GIG~~~A~sI 571 (687)
|.-..-.+-...|+.. ..++........|||||+++|++|.+. -|.+..+.... .+-|.+|+|||+++|..+
T Consensus 34 ~r~~AYr~Aa~~l~~l-~~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l 112 (335)
T 2bcq_A 34 WRALGYAKAINALKSF-HKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMW 112 (335)
T ss_dssp HHHHHHHHHHHHHHSC-CSCCCCHHHHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCTTHHHHHHHHTSTTCCHHHHHHH
T ss_pred HhHHHHHHHHHHHHhC-CccccCHHHHhcCCCccHHHHHHHHHHHHcCCchHHHHHhhhhHHHHHHhcCCCcCHHHHHHH
Confidence 4444444444445432 223334444579999999999988764 35555544332 234569999999999988
Q ss_pred HH
Q psy11422 572 IK 573 (687)
Q Consensus 572 ~~ 573 (687)
++
T Consensus 113 ~~ 114 (335)
T 2bcq_A 113 YQ 114 (335)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 142
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=86.29 E-value=2 Score=39.28 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCEEcccccccccEEEEcCCCC--------ccHHHHHHcCCeEEeHHHHHHHHhc
Q psy11422 623 RNEAIILIENLGGKVVNFISKNTNYLVKGQKPG--------KKLEKAIKLNIKILDEKNFVKIVKG 680 (687)
Q Consensus 623 R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g--------~Kl~kA~~lgI~Ii~E~~f~~~l~~ 680 (687)
++-++..+..+||+|..=-+.+++++|.-.... -=+.+|+++|++|++-+-+.++|..
T Consensus 32 ~~llk~~f~~LGa~I~~FFd~~VTiiITrR~~~~~~~~p~~DIL~rAr~~~mKIWs~EKl~RfL~~ 97 (134)
T 3oq4_A 32 RDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKAARFLKN 97 (134)
T ss_dssp HHHHHHHHHHTTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCeeeeHHHHHHHHHh
Confidence 455777888999999999999999999876432 2379999999999999999998864
No 143
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=86.15 E-value=1.7 Score=43.41 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=46.2
Q ss_pred CCChHHHhcCChhhhhcccCccHHHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHHHHHHHHhhcCChHHHHhcC----H
Q psy11422 479 VVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT----E 554 (687)
Q Consensus 479 I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~~Ak~La~~f~sld~l~~As----~ 554 (687)
.-++.+|..++.++|..+ ||+..+|..|.+.-+.. ..= .+.+++.+...+ .
T Consensus 84 fPtp~~la~~~~e~Lr~~-G~~~rKa~~i~~~A~~~---------~~g---------------~~p~~~~l~~~~~~e~~ 138 (228)
T 3s6i_A 84 FPTPEEIRDMDFEIMRAC-GFSARKIDSLKSIAEAT---------ISG---------------LIPTKEEAERLSNEELI 138 (228)
T ss_dssp CCCHHHHHHSCHHHHHHH-TCCHHHHHHHHHHHHHH---------HHT---------------SSCCHHHHTTSCHHHHH
T ss_pred CCCHHHHHcCCHHHHHHc-CCCHHHHHHHHHHHHHH---------HcC---------------CCCChHHHhcCCHHHHH
Confidence 358889988888888765 89988888777643321 110 111233333333 3
Q ss_pred HHHhcCCCCCHHHHHHHHHH
Q psy11422 555 EQLLNIPKIGSTTVKAFIKF 574 (687)
Q Consensus 555 eeL~~I~GIG~~~A~sI~~f 574 (687)
++|.+++|||+.+|+.+.-|
T Consensus 139 ~~L~~l~GIG~~TA~~ill~ 158 (228)
T 3s6i_A 139 ERLTQIKGIGRWTVEMLLIF 158 (228)
T ss_dssp HHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHhCCCcCHHHHHHHHHH
Confidence 67888888888888887765
No 144
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=86.11 E-value=1.7 Score=37.09 Aligned_cols=67 Identities=4% Similarity=-0.002 Sum_probs=54.2
Q ss_pred CCccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccc-cccEEEEcCCCCccHHHHHHcCCeEEeHHHHHHHHhc
Q psy11422 604 KNYLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISK-NTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 680 (687)
Q Consensus 604 ~~~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk-~t~~LV~G~~~g~Kl~kA~~lgI~Ii~E~~f~~~l~~ 680 (687)
.+.|+|++|.+-+.++ ....+..+|.+.||.|..+-.+ +++++|.... +..+.+.++.+++.+.++.
T Consensus 14 pdiFsg~~~~l~~~v~--~~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~--------~~~~~~~V~p~WI~dcI~k 81 (88)
T 3pc7_A 14 LDIFTGVRLYLPPSTP--DFSRLRRYFVAFDGDLVQEFDMTSATHVLGSRD--------KNPAAQQVSPEWIWACIRK 81 (88)
T ss_dssp CCCSTTCEECCCTTST--THHHHHHHHHHTTCEECCGGGGGGCSEEESCCT--------TCTTSEEECHHHHHHHHHH
T ss_pred ChhhcCeEEEccCCcC--chhhheeeeeecCCEEecccCCCcCeEEecCCC--------cCCCCcEEchHHHHHHHhC
Confidence 4579999999999885 3579999999999999776554 8889885442 3558999999999998864
No 145
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=85.65 E-value=0.92 Score=48.12 Aligned_cols=54 Identities=24% Similarity=0.202 Sum_probs=48.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
.-.++|+|+.++++|-++|+ .|+.++...+..+|..+.|+.+..++++++...+
T Consensus 37 l~~l~Gi~~~~~~kL~~ag~-~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~~ 90 (349)
T 1pzn_A 37 IEDLPGVGPATAEKLREAGY-DTLEAIAVASPIELKEVAGISEGTALKIIQAARK 90 (349)
T ss_dssp SSCCTTCCHHHHHHHHTTTC-CSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHcCC-CcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHhh
Confidence 45679999999999999996 8999999999999999999999999999887754
No 146
>1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} SCOP: d.142.2.4
Probab=84.89 E-value=1.4 Score=45.17 Aligned_cols=199 Identities=17% Similarity=0.125 Sum_probs=104.4
Q ss_pred cccCCCCCCChHHHHHHHHHHHH-hhccCCCeeEEEEEccceeEEEEEE-eCCEE--EEEEecCCCCccch---------
Q psy11422 88 KMMSLDNGFSDEDVIIFNKRITN-ELKLTKNIEYIAELKFDGIAVNLRY-EYGYL--KQASTRGDGNIGEN--------- 154 (687)
Q Consensus 88 pMlSL~k~~~~~el~~~~~~~~~-~l~~~~~~~~~~e~KiDGlsi~l~Y-~~G~l--~~a~TRGdG~~GeD--------- 154 (687)
..-||+|-|.. |++++.. .+. ...|+++.||||.-.++++ ++|.. ++.+.| +|..+++
T Consensus 10 ~Y~sieNh~~~-----~i~~~~~~~l~---~~ewvatEKIHGaNFsii~~~d~~~~~i~~akR-s~~l~~~e~FfGy~~i 80 (277)
T 1xdn_A 10 PYIEIDLPSES-----RIQSLHKSGLA---AQEWVACEKVHGTNFGIYLINQGDHEVVRFAKR-SGIMDPNENFFGYHIL 80 (277)
T ss_dssp CCCCCCCCCHH-----HHHHHHHTTGG---GSCEEEEEECCSEEEEEEEEEETTEEEEEEEET-TEECCTTCCCTTGGGG
T ss_pred CcccccchHHH-----HHHHHHhcCCC---CCcEEEEEeeccccEEEEEecCCCeeEEEEeec-ccccCcccccccHHHH
Confidence 45688888755 3344432 221 3579999999999999988 46777 888888 5655533
Q ss_pred ---hhhhhhhhccCCcccccCCCCceEEEEEEEEeehhhHHHHHHHH---HHcCCCCCCChhhhHHhHhhhcCc--cccc
Q psy11422 155 ---ITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYR---YHLGLKKFTNPRNAAAGILRQLNP--KINK 226 (687)
Q Consensus 155 ---vT~n~~~i~~iP~~l~~~~~~~~~evRGEi~~~~~~F~~~n~~~---~~~g~~~f~NpRN~aaG~lr~~~~--~~~~ 226 (687)
.+..++.+..+........-+..+.|-||++=..=.+-.....+ ...+++ ..||-+ +-=|+.. .-+
T Consensus 81 ~~~l~~~~~~l~~~l~~~~~~~~~~~v~VyGELfGg~y~hp~v~~~~~~~~~~~~~--~~p~~~---~~IQ~~i~~~Y~- 154 (277)
T 1xdn_A 81 IDEFTAQIRILNDLLKQKYGLSRVGRLVLNGELFGAKYKHPLVPKSEKWCTLPNGK--KFPIAG---VQIQREPFPQYS- 154 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCSEEEEEEEEEEEECCCTTSCCCCCEEECTTSC--EEEGGG---CCSCCCSSCCCE-
T ss_pred HHHHHHHHHHHHHHHHHhhccCCccEEEEEEEEecCccCCccccccccccccCccc--cCcccc---cccccccccccC-
Confidence 22233333333221110001468999999993210000000000 000000 012211 1012222 221
Q ss_pred ccccEEEEEecccccC-CC---CCCCHHHHHHHHHhc-CCCCCCCceEeCCHHHHHHHHHH-----HHHhhc-----CCC
Q psy11422 227 NKILHFFAHGVGELRG-MN---MPSSHSELLNWYQKI-GLSICGEYSVLSGVNKLIEFYKK-----INIKRF-----NLP 291 (687)
Q Consensus 227 ~r~l~f~~y~~~~~~~-~~---~~~~~~e~l~~L~~~-Gf~~~~~~~~~~~~~ei~~~~~~-----~~~~r~-----~l~ 291 (687)
..++|++|+|..... .+ .--+..+..+.+.+. ||.+.+.. ...+++++++|--+ +.+.=. .-+
T Consensus 155 -p~~~FYaFDI~~~~~~~~~~~~~L~fd~~~~~~~~~~gl~~ap~L-~rGt~~e~~~~~~~~f~s~ip~~~g~~~~~~~~ 232 (277)
T 1xdn_A 155 -PELHFFAFDIKYSVSGAEEDFVLLGYDEFVEFSSKVPNLLYARAL-VRGTLDECLAFDVENFMTPLPALLGLGNYPLEG 232 (277)
T ss_dssp -EEEEEEEEEEEEESSCCGGGEEECCHHHHHHHHHTSTTCEECCCS-EEESHHHHHTCCGGGCBCSHHHHTTCTTSCCTT
T ss_pred -CCceEEEEEEEEecCCCccccccCCHHHHHHHHHHhcCCCeeeee-eecCHHHHhhcccccccccchhhcCCCccCCCC
Confidence 269999999865431 11 013567888888885 99988743 45577777774221 111001 112
Q ss_pred CccceEEEEECC
Q psy11422 292 YEIDGVVYKINC 303 (687)
Q Consensus 292 y~iDGiVikv~~ 303 (687)
.---|+|||-..
T Consensus 233 NiaEGvViKp~~ 244 (277)
T 1xdn_A 233 NLAEGVVIRHVR 244 (277)
T ss_dssp CBCCEEEEEETT
T ss_pred CeeeeEEEeecc
Confidence 235699999875
No 147
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=84.86 E-value=2.8 Score=41.74 Aligned_cols=41 Identities=17% Similarity=0.120 Sum_probs=27.0
Q ss_pred HHHHHHCCCCCChHHHhcCChhhhhc---ccCccHHHHHHHHHHHH
Q psy11422 470 IEKLVNANIVVTAVDLYKINFKNLLR---LDRVSNKLANNILLAIQ 512 (687)
Q Consensus 470 i~~L~~~g~I~~i~DL~~L~~~~L~~---l~gfG~Ksa~~Ll~~Ie 512 (687)
...|++. .-++.+|..++.++|.. --||...+|.+|.+.-+
T Consensus 55 ~~~l~~~--fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~ 98 (226)
T 1orn_A 55 TKRLFEK--YRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCA 98 (226)
T ss_dssp HHHHHHH--CCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHH
T ss_pred HHHHHHH--CCCHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3444444 25899999998887543 13777778877776543
No 148
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=84.33 E-value=1.8 Score=44.14 Aligned_cols=77 Identities=13% Similarity=0.164 Sum_probs=55.4
Q ss_pred CCccCCeEEEEEcCC------C--cCCHHH-HHHHHHhcCCEEcccccccccEEEEcCCCC-cc-HHHHHH---cCCeEE
Q psy11422 604 KNYLKEKIFVFTGSL------Y--AFKRNE-AIILIENLGGKVVNFISKNTNYLVKGQKPG-KK-LEKAIK---LNIKIL 669 (687)
Q Consensus 604 ~~~l~g~~vv~TG~l------~--~~~R~e-~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g-~K-l~kA~~---lgI~Ii 669 (687)
...|.|.+|.|-+.- . ...|-+ ++.++..+||++++.++.+++++|+++... .. ++..+. .+++|+
T Consensus 162 ~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r~~~~~~~~~~~~~~~~iV 241 (263)
T 3ii6_X 162 LSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKFKIL 241 (263)
T ss_dssp GGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHHTCSSCCEEE
T ss_pred chhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCccHHHHHHHHhhcCCCCEEe
Confidence 357899999995521 0 123444 488999999999999999999999987432 11 222222 378999
Q ss_pred eHHHHHHHHhc
Q psy11422 670 DEKNFVKIVKG 680 (687)
Q Consensus 670 ~E~~f~~~l~~ 680 (687)
+.+++.+-+.+
T Consensus 242 ~~~Wv~dci~~ 252 (263)
T 3ii6_X 242 KESWVTDSIDK 252 (263)
T ss_dssp ETHHHHHHHHT
T ss_pred ChHHHHHHHHc
Confidence 99999988864
No 149
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.59 E-value=4.1 Score=36.64 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=56.4
Q ss_pred CCccCCeEEEEEcC-CCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCCCCccHH---HHHHc----CCeEEeHHHHH
Q psy11422 604 KNYLKEKIFVFTGS-LYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLE---KAIKL----NIKILDEKNFV 675 (687)
Q Consensus 604 ~~~l~g~~vv~TG~-l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g~Kl~---kA~~l----gI~Ii~E~~f~ 675 (687)
..-|.|.++-|-.. +....|+-++.++...||+|.+..+..++.+|+++.....+. ++..+ +..|++.++|.
T Consensus 18 ~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~~~~e~~~~l~~~~l~~~~~~~lv~i~Wl~ 97 (120)
T 2coe_A 18 DIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELLDVSWLI 97 (120)
T ss_dssp CCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSCCHHHHHHHHHHCCCCCSSCCEEEEHHHHH
T ss_pred ccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCCCHHHHHHHHhccccccccccEEeecHHHH
Confidence 35689999988654 222345668889999999999999999999999754222222 32222 57899999999
Q ss_pred HHHhc
Q psy11422 676 KIVKG 680 (687)
Q Consensus 676 ~~l~~ 680 (687)
+-++.
T Consensus 98 esmk~ 102 (120)
T 2coe_A 98 ECIGA 102 (120)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 98864
No 150
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=82.84 E-value=2.2 Score=42.85 Aligned_cols=72 Identities=14% Similarity=0.041 Sum_probs=50.9
Q ss_pred CCccCCeEEEEEcCCCcCC------------HHHHHHHHHhcCCEE--ccccc-ccccEEEEcCCCCccHHHHHHcCCeE
Q psy11422 604 KNYLKEKIFVFTGSLYAFK------------RNEAIILIENLGGKV--VNFIS-KNTNYLVKGQKPGKKLEKAIKLNIKI 668 (687)
Q Consensus 604 ~~~l~g~~vv~TG~l~~~~------------R~e~~~~i~~~Gg~v--~~sVs-k~t~~LV~G~~~g~Kl~kA~~lgI~I 668 (687)
...|.|.+|+|++.-.... ++.+..+++.+||++ ...++ ..+|++++.+.. .|.+++++|
T Consensus 149 ~~Lf~g~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~~~v~~~~~~~~d~v~~~~~~-----~~~~~~~~i 223 (241)
T 2vxb_A 149 KGPLFGKKILFIIPEAKSWQKKIENTEQGQKALAHVYHALALGADVEIRPNVAHLECDLILTMDGN-----IVDETNCPV 223 (241)
T ss_dssp CCTTTTCEEEECCCC------------CHHHHHHHHHHHHHTTCEEECCSCCSSCCCSEEECSSSC-----CCSSCSSCE
T ss_pred CcCCCCcEEEEEeCCCcccccccccccccchHHHHHHHHHHcCCceecccccccCCccEEEECCcc-----ccccCCCCE
Confidence 3579999999875421111 378899999999999 33333 367877774432 256789999
Q ss_pred EeHHHHHHHHhc
Q psy11422 669 LDEKNFVKIVKG 680 (687)
Q Consensus 669 i~E~~f~~~l~~ 680 (687)
++.+++.+.+-.
T Consensus 224 V~~eWv~~~i~~ 235 (241)
T 2vxb_A 224 VDPEWIVECLIS 235 (241)
T ss_dssp ECHHHHHHHHHH
T ss_pred ecHHHHHHHHHh
Confidence 999999998754
No 151
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=82.72 E-value=2.3 Score=42.22 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=50.3
Q ss_pred CccCCeEEEEEcCCC-cCCHHHHHHHHHhcCCEEcc--cccc--------cccEEEEcCCCC---ccHHHHH--HcCCeE
Q psy11422 605 NYLKEKIFVFTGSLY-AFKRNEAIILIENLGGKVVN--FISK--------NTNYLVKGQKPG---KKLEKAI--KLNIKI 668 (687)
Q Consensus 605 ~~l~g~~vv~TG~l~-~~~R~e~~~~i~~~Gg~v~~--sVsk--------~t~~LV~G~~~g---~Kl~kA~--~lgI~I 668 (687)
..|.|++|++|+... ..++++++++|+..||++.. +.+. .-.|||.+++.- .++.+.. ..+++|
T Consensus 112 ~LF~G~~f~it~~~~~~p~~~~l~~iI~~~GG~v~~~p~~~~~~~~~~~~~~~~vis~~~d~~~~~~f~~~~~~~~~~~i 191 (220)
T 3l41_A 112 SLLEDYVVYLTSKTVAPENVPAVISIVKSNGGVCSTLNVYNKRLARHLEDGNVVLITCNEDSHIWTNFLDNASQNKTIFL 191 (220)
T ss_dssp CTTTTSEEEEETTSSCGGGHHHHHHHHHHTTCEEEEECSCCHHHHHHHHHCCEEEEECGGGHHHHTTTHHHHTTCTTEEE
T ss_pred hhhhheeEEEeccccCCCCCceEEEEEecCCcEechhhHHHHHHHHhcccCCEEEEEeCCcchHHHHhhccccccceEEE
Confidence 479999999999872 24799999999999999987 1111 113666664321 2332321 235679
Q ss_pred EeHHHHHHHH
Q psy11422 669 LDEKNFVKIV 678 (687)
Q Consensus 669 i~E~~f~~~l 678 (687)
++-+.++.-+
T Consensus 192 ~~~e~ll~~i 201 (220)
T 3l41_A 192 QNYDWLIKTV 201 (220)
T ss_dssp EEHHHHHHHH
T ss_pred echhHHHHHH
Confidence 9999999865
No 152
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=81.58 E-value=3.5 Score=35.42 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=24.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHhc
Q psy11422 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYK 487 (687)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~ 487 (687)
+.-++|+||+++.+.|.+.| |.|++||..
T Consensus 5 ~L~~LPNiG~~~e~~L~~vG-I~s~e~L~~ 33 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDLIKAG-IKTPVELKD 33 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTT-CCSHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHHcC-CCCHHHHHh
Confidence 35589999999999999999 588888765
No 153
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=81.17 E-value=2.7 Score=44.12 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=46.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
..+.+||+|+..+.+|.++| ++++.||..++.+++..+-|++++..+.+.+.++.
T Consensus 158 pL~Qlp~i~~~~~~~l~~~~-i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~ 212 (328)
T 3im1_A 158 PLRQIPHFNNKILEKCKEIN-VETVYDIMALEDEERDEILTLTDSQLAQVAAFVNN 212 (328)
T ss_dssp GGGGSTTCCHHHHHHHHHTT-CCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred ceeCCCCCCHHHHHHHHhCC-CCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHh
Confidence 57899999999999999887 58999999999888888778888777777776654
No 154
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=80.79 E-value=4.6 Score=40.88 Aligned_cols=105 Identities=16% Similarity=0.238 Sum_probs=67.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHHcccCCHHHHHHHc-CCCCCCHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYAL-GIRHVGETTAK 537 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aL-GIp~vG~~~Ak 537 (687)
.+|=-||+|.....|++.- .+++.|+.-+-+++..+---|.-+.+.--.+.+ --|..| .-.|+|.++|.
T Consensus 356 lidehglspdaadeliehf--esiagilatdleeiermyeegrlseeayraave--------iqlaeltkkegvgrktae 425 (519)
T 2csb_A 356 LIDEHGLSPDAADELIEHF--ESIAGILATDLEEIERMYEEGRLSEEAYRAAVE--------IQLAELTKKEGVGRKTAE 425 (519)
T ss_dssp HHHHHCCCHHHHHHHHHHH--SSHHHHHTSCHHHHHHHHHHTSSCHHHHHHHHH--------HHHHHHHTSTTCCHHHHH
T ss_pred HHHhcCCCcchHHHHHHHH--HHHHHHHhccHHHHHHHHHcccccHHHHHHHHH--------HHHHHHhhhcccchhHHH
Confidence 3466789999999998853 688888765444333221011111111111111 112222 34689999999
Q ss_pred HHHhhcCChHHHHhc----CHHHHhcCCCCCHHHHHHHHH
Q psy11422 538 ELANYFKNLECMFKA----TEEQLLNIPKIGSTTVKAFIK 573 (687)
Q Consensus 538 ~La~~f~sld~l~~A----s~eeL~~I~GIG~~~A~sI~~ 573 (687)
+|+..||+.+.+.+. ..+.|.++.|+|+.+..++..
T Consensus 426 rllrafgnpervkqlarefeieklasvegvgervlrslvp 465 (519)
T 2csb_A 426 RLLRAFGNPERVKQLAREFEIEKLASVEGVGERVLRSLVP 465 (519)
T ss_dssp HHHHHHSSHHHHHHHHHTTCHHHHHTSTTCSHHHHHHHST
T ss_pred HHHHHhCCHHHHHHHHHHHhHHHHhhccchHHHHHHHhcc
Confidence 999999999888764 468899999999987777654
No 155
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=80.69 E-value=2.9 Score=44.06 Aligned_cols=93 Identities=15% Similarity=0.100 Sum_probs=56.3
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCC----hHHHhcCChhhh-hcccCccH----------------HHHHHHHHHHHHc
Q psy11422 456 SRKAMNIIGLGKKMIEKLVNANIVVT----AVDLYKINFKNL-LRLDRVSN----------------KLANNILLAIQKS 514 (687)
Q Consensus 456 sr~~l~I~GLG~k~i~~L~~~g~I~~----i~DL~~L~~~~L-~~l~gfG~----------------Ksa~~Ll~~Ie~s 514 (687)
.-..+..||-+++++..|.+.|++.- =.|++.+-.+.+ ..+.-.|. -..+.+++..
T Consensus 142 gi~~i~apgeAEA~lA~la~~g~~~~I~S~D~Dllql~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--- 218 (336)
T 1rxw_A 142 GIPFVDAPSEGEAQAAYMAAKGDVEYTGSQDYDSLLFGSPRLARNLAITGKRKLPGKNVYVDVKPEIIILESNLKRL--- 218 (336)
T ss_dssp TCCEEECSSCHHHHHHHHHHTTSSSEEECSSSHHHHTTCSEEEESCCC-------------CCCCEEEEHHHHHHHH---
T ss_pred CCCEEEcCchHHHHHHHHHHcCCeeEEEcCCCCcceecCCeEEEeccccccccCCccccccccceEEeEHHHHHHHc---
Confidence 34566778988999999998886442 358887643332 11111111 0122333332
Q ss_pred ccCCHHHHH-----HHc----CCCCCCHHHHHHHHhhcCChHHHHhc
Q psy11422 515 KLTTFSRFI-----YAL----GIRHVGETTAKELANYFKNLECMFKA 552 (687)
Q Consensus 515 k~~~l~r~L-----~aL----GIp~vG~~~Ak~La~~f~sld~l~~A 552 (687)
..+-.+|+ .+. ||||||+++|..|.+.|++++++...
T Consensus 219 -gl~~~q~id~~~L~GsD~ipGv~GiG~KtA~kLl~~~gsle~i~~~ 264 (336)
T 1rxw_A 219 -GLTREQLIDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKA 264 (336)
T ss_dssp -TCCHHHHHHHHHHHCBTTBCCCTTCCHHHHHHHHHHHSSHHHHHHH
T ss_pred -CCCHHHHHHHHhhcCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHh
Confidence 23323322 222 89999999999999999999988764
No 156
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=80.51 E-value=2.4 Score=41.69 Aligned_cols=66 Identities=14% Similarity=0.200 Sum_probs=39.0
Q ss_pred CChHHHhcCChhhhhcc---cCccHHHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHHHHHHHHhhcC-ChHHHHhcCHH
Q psy11422 480 VTAVDLYKINFKNLLRL---DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFK-NLECMFKATEE 555 (687)
Q Consensus 480 ~~i~DL~~L~~~~L~~l---~gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~~Ak~La~~f~-sld~l~~As~e 555 (687)
-++.+|..++.++|.++ -||...+|.+|.+.-+... +.|+ .+ ..+.+
T Consensus 59 pt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~~~-------------------------~~~~g~~----~~~~~ 109 (211)
T 2abk_A 59 NTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILL-------------------------EQHNGEV----PEDRA 109 (211)
T ss_dssp CSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHH-------------------------HHTTTSC----CSCHH
T ss_pred CCHHHHHCCCHHHHHHHHHHcCCChHHHHHHHHHHHHHH-------------------------HHcCCCc----hHHHH
Confidence 57888888777776442 3666667777765433211 1111 11 12456
Q ss_pred HHhcCCCCCHHHHHHHHHH
Q psy11422 556 QLLNIPKIGSTTVKAFIKF 574 (687)
Q Consensus 556 eL~~I~GIG~~~A~sI~~f 574 (687)
+|.+++|||+++|..|.-|
T Consensus 110 ~L~~l~GIG~~tA~~il~~ 128 (211)
T 2abk_A 110 ALEALPGVGRKTANVVLNT 128 (211)
T ss_dssp HHHHSTTCCHHHHHHHHHH
T ss_pred HHHhCCCCChHHHHHHHHH
Confidence 7777777777777777665
No 157
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=80.29 E-value=2.9 Score=43.80 Aligned_cols=57 Identities=16% Similarity=0.045 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCEEcccccccccEEEEcCCCCcc----HHHHHHcCCeEEeHHHHHHHHh
Q psy11422 623 RNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKK----LEKAIKLNIKILDEKNFVKIVK 679 (687)
Q Consensus 623 R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g~K----l~kA~~lgI~Ii~E~~f~~~l~ 679 (687)
+.++.+.++.+|+++.+-.+..|++||.....+.| .-.|.=.|.+|++.+.|.+++.
T Consensus 126 ~~~L~~~L~~LGik~v~~~~detTHlVm~krnT~KvTvK~L~ALI~gkPIV~~~Fl~al~~ 186 (325)
T 3huf_A 126 LSQWASNLNLLGIPTGLRDSDATTHFVMNRQAGSSITVGTMYAFLKKTVIIDDSYLQYLST 186 (325)
T ss_dssp HHHHHHHHHTTTCCEESSCCTTCCEEECCCCCSSCCCHHHHHHHHTTCEEECHHHHHHHTT
T ss_pred HHHHHHHHHHcCCEEEEccCCCEEEEEEeccccccchHHHHHHHHCCCcEecHHHHHHHHH
Confidence 67799999999999994458889999998655555 8888888999999999988874
No 158
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=79.95 E-value=0.97 Score=42.86 Aligned_cols=73 Identities=11% Similarity=0.109 Sum_probs=47.6
Q ss_pred HHHHHHHHCCCCCChHHHhcCChhhhhcc-c--CccHHHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHHHHHHHHhhcC
Q psy11422 468 KMIEKLVNANIVVTAVDLYKINFKNLLRL-D--RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFK 544 (687)
Q Consensus 468 k~i~~L~~~g~I~~i~DL~~L~~~~L~~l-~--gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~~Ak~La~~f~ 544 (687)
+...+|++.. .|+.+|..++.++|+++ . ||-...|.+|.+.-+
T Consensus 51 ~~~~~l~~~~--pt~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a~-------------------------------- 96 (161)
T 4e9f_A 51 PVLWKFLEKY--PSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSD-------------------------------- 96 (161)
T ss_dssp HHHHHHHHHS--CSHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHHC--CCHHHHhccChHhHHhHhhhcCCHHHHHHHHHHHhC--------------------------------
Confidence 3455566543 58888888887776443 3 444566766654211
Q ss_pred ChHHHHhcCHHHHhcCCCCCHHHHHHHHHHHcc
Q psy11422 545 NLECMFKATEEQLLNIPKIGSTTVKAFIKFINQ 577 (687)
Q Consensus 545 sld~l~~As~eeL~~I~GIG~~~A~sI~~ff~~ 577 (687)
.+.-.+.++|.+++|||+.+|.++..|+-+
T Consensus 97 ---~~vp~~~~~L~~LpGVG~yTAdav~~F~~~ 126 (161)
T 4e9f_A 97 ---EYLTKQWKYPIELHGIGKYGNDSYRIFCVN 126 (161)
T ss_dssp ---HHHHSCCSSGGGSTTCCHHHHHHHHHHTSS
T ss_pred ---CcCCCChhhhhcCCCchHHHHHHHHHHHCC
Confidence 111224578899999999999999998754
No 159
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=79.67 E-value=2.9 Score=43.24 Aligned_cols=64 Identities=22% Similarity=0.197 Sum_probs=39.8
Q ss_pred CChHHHhcCChhhhhcccCccHHHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHHHHHHHHhhcCChHHHHhc----CHH
Q psy11422 480 VTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA----TEE 555 (687)
Q Consensus 480 ~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~~Ak~La~~f~sld~l~~A----s~e 555 (687)
-++++|..++.++|..+ ||+..+|..|.+.-+. ++++.+... ..+
T Consensus 162 Ptp~~la~~~~~~Lr~~-G~~~rKa~~i~~~A~~------------------------------g~l~~l~~~~~~e~~~ 210 (295)
T 2jhn_A 162 PTQEAILKAGVEGLREC-GLSRRKAELIVEIAKE------------------------------ENLEELKEWGEEEAYE 210 (295)
T ss_dssp CCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHTC------------------------------SSGGGGGGSCHHHHHH
T ss_pred CCHHHHHcCCHHHHHHc-CCCHHHHHHHHHHHHC------------------------------CCHhhhhcCCHHHHHH
Confidence 57777777777777665 7887778777654322 112222221 135
Q ss_pred HHhcCCCCCHHHHHHHHHH
Q psy11422 556 QLLNIPKIGSTTVKAFIKF 574 (687)
Q Consensus 556 eL~~I~GIG~~~A~sI~~f 574 (687)
+|.+++|||+++|+.|.-|
T Consensus 211 ~L~~lpGIG~~TA~~ill~ 229 (295)
T 2jhn_A 211 YLTSFKGIGRWTAELVLSI 229 (295)
T ss_dssp HHHTSTTCCHHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHHH
Confidence 6777778888777777665
No 160
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=77.92 E-value=4.2 Score=40.34 Aligned_cols=65 Identities=25% Similarity=0.299 Sum_probs=38.0
Q ss_pred CChHHHhcCChhhhhcc---cCccHHHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHHHHHHHHhhcC-ChHHHHhcCHH
Q psy11422 480 VTAVDLYKINFKNLLRL---DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFK-NLECMFKATEE 555 (687)
Q Consensus 480 ~~i~DL~~L~~~~L~~l---~gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~~Ak~La~~f~-sld~l~~As~e 555 (687)
-++.+|..++.++|.++ -||. .+|.+|.+.-+.. .+.|+ .++ .+.+
T Consensus 60 pt~~~la~~~~~~l~~~i~~~G~~-~kA~~l~~~a~~i-------------------------~~~~~g~~p----~~~~ 109 (225)
T 1kg2_A 60 PTVTDLANAPLDEVLHLWTGLGYY-ARARNLHKAAQQV-------------------------ATLHGGKFP----ETFE 109 (225)
T ss_dssp SSHHHHHHSCHHHHHHHHTTSCCT-HHHHHHHHHHHHH-------------------------HHHSTTSCC----CSHH
T ss_pred CCHHHHHCCCHHHHHHHHHhCChH-HHHHHHHHHHHHH-------------------------HHHhCCCch----HHHH
Confidence 57888888888777642 2665 3566666543221 11111 111 1456
Q ss_pred HHhcCCCCCHHHHHHHHHH
Q psy11422 556 QLLNIPKIGSTTVKAFIKF 574 (687)
Q Consensus 556 eL~~I~GIG~~~A~sI~~f 574 (687)
+|.+++|||+++|..|..|
T Consensus 110 ~L~~lpGIG~~TA~~il~~ 128 (225)
T 1kg2_A 110 EVAALPGVGRSTAGAILSL 128 (225)
T ss_dssp HHHTSTTCCHHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHH
Confidence 7777777777777777665
No 161
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=77.89 E-value=3.2 Score=44.87 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=48.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
+.|.=-||+++++++|-++|+ .|+.|+...+..+|..+.|+.+..+.+|++...+
T Consensus 84 ~~l~~~gi~~~~~~~L~~ag~-~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a~~ 138 (400)
T 3lda_A 84 EKLQVNGITMADVKKLRESGL-HTAEAVAYAPRKDLLEIKGISEAKADKLLNEAAR 138 (400)
T ss_dssp GGGCCTTCCHHHHHHHHHTTC-CBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHcCC-CcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 345556799999999999996 8999999999999999999999999999998764
No 162
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=77.75 E-value=1.8 Score=44.93 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=20.5
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHh
Q psy11422 527 GIRHVGETTAKELANYFKNLECMFK 551 (687)
Q Consensus 527 GIp~vG~~~Ak~La~~f~sld~l~~ 551 (687)
||||||+++|..|++.|+|++++..
T Consensus 207 GVpGIG~KTA~kLL~~~gsle~i~~ 231 (290)
T 1exn_A 207 GVEGIGAKRGYNIIREFGNVLDIID 231 (290)
T ss_dssp CCTTCCHHHHHHHHHHHCSHHHHHH
T ss_pred CCCcCCHhHHHHHHHHcCCHHHHHH
Confidence 6788888888888888888887764
No 163
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=77.55 E-value=2.4 Score=48.94 Aligned_cols=51 Identities=24% Similarity=0.361 Sum_probs=43.1
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
.+.|||+|+.++.+|+++|+ +|+.||- ++.++|..+ +|++.++++++++.+
T Consensus 659 L~qlp~i~~~rar~L~~~g~-~s~~~l~-~~~~~l~~~--l~~~~~~~i~~~~~~ 709 (715)
T 2va8_A 659 LVQISGVGRKRARLLYNNGI-KELGDVV-MNPDKVKNL--LGQKLGEKVVQEAAR 709 (715)
T ss_dssp HHTSTTCCHHHHHHHHHTTC-CSHHHHH-HCHHHHHHH--HCHHHHHHHHHHHHH
T ss_pred hhhCCCCCHHHHHHHHHcCC-CCHHHHh-CCHHHHHHH--hChhHHHHHHHHHHH
Confidence 46799999999999999996 9999999 999888887 457778888776643
No 164
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=76.92 E-value=2.2 Score=45.26 Aligned_cols=50 Identities=22% Similarity=0.210 Sum_probs=41.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHH
Q psy11422 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLA 510 (687)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~ 510 (687)
..-++.|+|+++.++|-..| |.|+.||..+..+.|... ||.+....|++.
T Consensus 179 pv~~l~GiG~~~~~~L~~~G-I~Ti~dL~~~~~~~L~~~--fG~~~g~~l~~~ 228 (356)
T 4dez_A 179 PPDALWGVGPKTTKKLAAMG-ITTVADLAVTDPSVLTTA--FGPSTGLWLLLL 228 (356)
T ss_dssp CGGGSTTCCHHHHHHHHHTT-CCSHHHHHTSCHHHHHHH--HCHHHHHHHHHH
T ss_pred cHHHHcCCchhHHHHHHHcC-CCeecccccCCHHHHHHH--hCChHHHHHHHH
Confidence 34579999999999998888 699999999999999875 898777666543
No 165
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=76.68 E-value=2 Score=44.68 Aligned_cols=64 Identities=16% Similarity=0.287 Sum_probs=47.1
Q ss_pred cccCCHHH-HHHH-cCCCCCCHHHHHHHHhhcCChHHHHhcC-----HHH----HhcCC-C-----CCHHHHHHHHHHHc
Q psy11422 514 SKLTTFSR-FIYA-LGIRHVGETTAKELANYFKNLECMFKAT-----EEQ----LLNIP-K-----IGSTTVKAFIKFIN 576 (687)
Q Consensus 514 sk~~~l~r-~L~a-LGIp~vG~~~Ak~La~~f~sld~l~~As-----~ee----L~~I~-G-----IG~~~A~sI~~ff~ 576 (687)
++...+.. |+.- +.||||+...|..|.++|+|+..|..|- .++ |.++. | ||+.+++.|+.+|.
T Consensus 226 ~~~~t~~e~~~~mL~~IpGVs~~~A~~I~~~ypTp~~L~~Ay~~~~~~~e~~~lL~~i~~g~~~r~IG~~lS~kI~~~f~ 305 (311)
T 2ziu_A 226 NKCQTVREVFARQLMQISGVSGDKAAAVLEHYSTVSSLLQAYDKCSSETEKEKLLSSVKYGKLKRNLGPALSRTIYQLYC 305 (311)
T ss_dssp HTCCBHHHHHHHHHTTBTTCCHHHHHHHHHHCSSHHHHHHHHHHCSSHHHHTTTTTTCEETTTTEECHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHhccCCCHHHHHHHHHHCCCHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCcCHHHHHHHHHHhc
Confidence 34444442 3333 4899999999999999999999887764 232 55553 3 99999999999986
Q ss_pred c
Q psy11422 577 Q 577 (687)
Q Consensus 577 ~ 577 (687)
.
T Consensus 306 ~ 306 (311)
T 2ziu_A 306 T 306 (311)
T ss_dssp C
T ss_pred c
Confidence 4
No 166
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=76.13 E-value=6.8 Score=40.50 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=15.0
Q ss_pred CHHHHhc-CCCCCHHHHHHHHHH
Q psy11422 553 TEEQLLN-IPKIGSTTVKAFIKF 574 (687)
Q Consensus 553 s~eeL~~-I~GIG~~~A~sI~~f 574 (687)
+.++|.+ ++|||+++|..|..|
T Consensus 126 ~~~~Ll~~LpGIG~kTA~~iL~~ 148 (287)
T 3n5n_X 126 TAETLQQLLPGVGRYTAGAIASI 148 (287)
T ss_dssp SHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHH
Confidence 4566776 777777777776665
No 167
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=75.99 E-value=3.2 Score=47.97 Aligned_cols=51 Identities=37% Similarity=0.578 Sum_probs=47.1
Q ss_pred cCCCCCCHHHHHHHHhh-cCChHHHHhcCHHHHhcCCCCCHHHHHHHHHHHc
Q psy11422 526 LGIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576 (687)
Q Consensus 526 LGIp~vG~~~Ak~La~~-f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ff~ 576 (687)
+.|||||..+|+.|.+. +.|+.+|..++.+++..++++|+.+.+++..++.
T Consensus 649 ~qlp~v~~~rar~L~~~G~~s~~dl~~~~~~~l~~~~~~~~~i~~~~~~~~~ 700 (720)
T 2zj8_A 649 MQLPLVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGVKTVEAIFKFLG 700 (720)
T ss_dssp TTSTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHC
T ss_pred hhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHhHhHHHHHHHHHHHhcc
Confidence 58999999999999875 8999999999999999999999999999988875
No 168
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=75.72 E-value=3.4 Score=37.84 Aligned_cols=76 Identities=11% Similarity=0.054 Sum_probs=56.8
Q ss_pred CccCCeEEEEEcC-CCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCCCCccHH-----HHHH-----cCCeEEeHHH
Q psy11422 605 NYLKEKIFVFTGS-LYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQKPGKKLE-----KAIK-----LNIKILDEKN 673 (687)
Q Consensus 605 ~~l~g~~vv~TG~-l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g~Kl~-----kA~~-----lgI~Ii~E~~ 673 (687)
.-|.|.++-|-+. +....|+-+++++...|+.|.+..|..++.+|+.++...-+. +-.. .+..+++..+
T Consensus 9 ~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~lLdisW 88 (133)
T 2dun_A 9 TRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPALLDISW 88 (133)
T ss_dssp CSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEEEEHHH
T ss_pred cccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEEeccHH
Confidence 4688999998886 322246668999999999999999999999999554332221 2222 3588999999
Q ss_pred HHHHHhc
Q psy11422 674 FVKIVKG 680 (687)
Q Consensus 674 f~~~l~~ 680 (687)
|...+..
T Consensus 89 ltecm~~ 95 (133)
T 2dun_A 89 LTESLGA 95 (133)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988864
No 169
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=75.62 E-value=10 Score=35.34 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCEEcccccccccEEEEcCCCC--------ccHHHHHHcCCeEEeHHHHHHHHhc
Q psy11422 624 NEAIILIENLGGKVVNFISKNTNYLVKGQKPG--------KKLEKAIKLNIKILDEKNFVKIVKG 680 (687)
Q Consensus 624 ~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g--------~Kl~kA~~lgI~Ii~E~~f~~~l~~ 680 (687)
+-++..+..+||+|..=-+.+++++|.-.... -=+.+|+++|++|++-+-+.+||..
T Consensus 50 ~llkk~f~~LGa~I~~FFd~~VTiIITrR~~~~~~~yp~~DIL~rAr~~~mKIWs~EKl~RfL~~ 114 (151)
T 3oq0_A 50 DLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKAARFLKN 114 (151)
T ss_dssp HHHHHHHHHHTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEEEEHHHHHHHHHT
T ss_pred HHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCeeecHHHHHHHHHh
Confidence 33557778999999999999999999876421 3579999999999999999999864
No 170
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=73.88 E-value=7.5 Score=36.10 Aligned_cols=91 Identities=14% Similarity=0.209 Sum_probs=66.5
Q ss_pred HHHHHHHHHCCCCCChHHHhcCChhhhhcccCcc-HHHHHHHHHHHHHccc---------CCHHHHHHHcCCCCCCHHHH
Q psy11422 467 KKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS-NKLANNILLAIQKSKL---------TTFSRFIYALGIRHVGETTA 536 (687)
Q Consensus 467 ~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG-~Ksa~~Ll~~Ie~sk~---------~~l~r~L~aLGIp~vG~~~A 536 (687)
+.-...|.++|+ . ...|..|+.+||..+ |+- .---.+|+.+|+.-+. .++..||.++|++. -..
T Consensus 23 ~~Y~~~F~~~g~-d-~~~l~~lt~~DL~~l-GIt~~gHrkkil~ai~~L~~~~~~~~~~p~~v~~WL~~igL~q---Y~~ 96 (149)
T 3sei_A 23 QLYAPNFISAGY-D-LPTISRMTPEDLTAI-GVTKPGHRKKIAAEISGLSIPDWLPEHKPANLAVWLSMIGLAQ---YYK 96 (149)
T ss_dssp GGGHHHHHHTTC-C-HHHHTTCCHHHHHHT-TCCSHHHHHHHHHHHHTCCCCCCSCSSCCSCHHHHHHHTTCGG---GHH
T ss_pred HHHHHHHHHcCC-C-HHHHccCCHHHHHHc-CCCCHHHHHHHHHHHHHHHhccccCCCCcccHHHHHHHcCchh---hHH
Confidence 446667778886 4 778888999999887 443 4567799999987553 25789999999874 233
Q ss_pred HHHHhhcCChHHHHhcCHHHHhcCCCCC
Q psy11422 537 KELANYFKNLECMFKATEEQLLNIPKIG 564 (687)
Q Consensus 537 k~La~~f~sld~l~~As~eeL~~I~GIG 564 (687)
.-..+.|.+++.+...+.++|..+ ||.
T Consensus 97 ~F~~~g~d~~~~l~~lt~~dL~~l-GI~ 123 (149)
T 3sei_A 97 VLVDNGYENIDFITDITWEDLQEI-GIT 123 (149)
T ss_dssp HHHHTTCCSHHHHTTCCHHHHHHH-TCC
T ss_pred HHHHCCCchHHHHhhCCHHHHHHC-CCC
Confidence 344556778999999999998653 443
No 171
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=72.97 E-value=2 Score=32.61 Aligned_cols=24 Identities=17% Similarity=0.487 Sum_probs=19.0
Q ss_pred CCCCCCCCCcceeecCceeEEecC
Q psy11422 415 PNICPICNSKIIYIESNLIARCSG 438 (687)
Q Consensus 415 P~~CP~C~~~l~~~~~~~~~~C~n 438 (687)
-..||.||+.+........++|..
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~k 42 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGK 42 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSS
T ss_pred cccCCCCCCceEEecCCCeEECCC
Confidence 467999999887766667889964
No 172
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=72.75 E-value=2.2 Score=49.22 Aligned_cols=50 Identities=22% Similarity=0.358 Sum_probs=43.1
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQ 512 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie 512 (687)
.+.|||+|+.++.+|+++| ++|+.||..+. ++|..+ +|++.++++++.+.
T Consensus 634 L~qlp~v~~~~ar~l~~~g-~~s~~~l~~~~-~~l~~l--l~~~~~~~i~~~~~ 683 (702)
T 2p6r_A 634 LVRIRHIGRVRARKLYNAG-IRNAEDIVRHR-EKVASL--IGRGIAERVVEGIS 683 (702)
T ss_dssp HHTSTTCCHHHHHHHHTTT-CCSHHHHHHTH-HHHHHH--HCHHHHHHHHHHHH
T ss_pred hhcCCCCCHHHHHHHHHcC-CCCHHHHHhhh-HHHHHH--hChhHHHHHHHhcC
Confidence 4679999999999999999 69999999988 888876 45888888888775
No 173
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=72.16 E-value=2.2 Score=41.78 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=24.0
Q ss_pred cCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 487 KINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 487 ~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
+++.++|..|||+|+++|+.|++.-++
T Consensus 128 TA~~~eL~~LpGIG~k~A~~IIeyRe~ 154 (205)
T 2i5h_A 128 TTRMHQLELLPGVGKKMMWAIIEERKK 154 (205)
T ss_dssp CSSSBGGGGSTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHhcCCCcCHHHHHHHHHHHhc
Confidence 677899999999999999999987665
No 174
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=71.89 E-value=7.3 Score=41.55 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=18.9
Q ss_pred HHHHhcCCCCCHHHHHHHHHH
Q psy11422 554 EEQLLNIPKIGSTTVKAFIKF 574 (687)
Q Consensus 554 ~eeL~~I~GIG~~~A~sI~~f 574 (687)
.++|.+++|||+++|+.|.-|
T Consensus 252 ~~~L~~LpGIGp~TA~~ill~ 272 (360)
T 2xhi_A 252 HKALCILPGVGTCVADKICLM 272 (360)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHH
Confidence 468999999999999999877
No 175
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=71.66 E-value=8.8 Score=32.92 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=25.1
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcC
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L 488 (687)
.-++|+||+++.+.|.+.| |.|++||..+
T Consensus 6 L~dLPNig~~~e~~L~~~G-I~t~~~Lr~~ 34 (93)
T 3mab_A 6 LSELPNIGKVLEQDLIKAG-IKTPVELKDV 34 (93)
T ss_dssp GGGSTTCCHHHHHHHHHTT-CCSHHHHHHH
T ss_pred HhhCCCCCHHHHHHHHHcC-CCCHHHHHhC
Confidence 5689999999999999999 6888888764
No 176
>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4}
Probab=71.24 E-value=1.8 Score=46.53 Aligned_cols=57 Identities=16% Similarity=0.040 Sum_probs=44.1
Q ss_pred eeccccccCCCCCCChHHHHHHHHHHHHhhccCCCeeEEEEEccceeEEEEEEeCCEEEEEEecC
Q psy11422 83 VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRG 147 (687)
Q Consensus 83 v~H~~pMlSL~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRG 147 (687)
.+|.+..-+++|.|+..|...+.. +. + ...+.++.|+||--+...+.+|++ .+.|||
T Consensus 65 ~~~~Iv~R~~~KFFN~~E~~~t~~-l~--~----~~pv~V~eK~DGslv~~~~~~G~l-~~~SKg 121 (375)
T 2c5u_A 65 KPVRIASRPMEKFFNLNENPFTMN-ID--L----NDVDYILTKEDGSLVSTYLDGDEI-LFKSKG 121 (375)
T ss_dssp EEEEEEECCCCCCCBTTSSGGGSS-CC--G----GGEEEEEEECCSEEEEEEEETTEE-EEEETT
T ss_pred CcceEEEcCCCCCccCCCcccccc-cc--c----CCCEEEEEecCCeEEEEEEECCEE-EEEeCC
Confidence 346778889999999998664322 11 1 247999999999999888899986 789998
No 177
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=70.97 E-value=3.3 Score=45.12 Aligned_cols=47 Identities=23% Similarity=0.202 Sum_probs=39.2
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHH
Q psy11422 460 MNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILL 509 (687)
Q Consensus 460 l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~ 509 (687)
-++.|+|+++.++|-..| |.++.||..+..+.|... ||.+.+..|++
T Consensus 237 ~~l~GIG~~t~~~L~~lG-I~TigdLa~~~~~~L~~~--fG~~~g~~L~~ 283 (420)
T 3osn_A 237 KEIPGIGYKTAKCLEALG-INSVRDLQTFSPKILEKE--LGISVAQRIQK 283 (420)
T ss_dssp GGSTTCCHHHHHHHHHTT-CCSHHHHHHSCHHHHHHH--HHHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHhC-CCcHHHHhhCCHHHHHHH--hCchHHHHHHH
Confidence 479999999999998877 699999999998888875 88776665554
No 178
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=70.66 E-value=2.6 Score=31.59 Aligned_cols=22 Identities=32% Similarity=0.751 Sum_probs=18.5
Q ss_pred CCCCCCC-cceeecCceeEEecC
Q psy11422 417 ICPICNS-KIIYIESNLIARCSG 438 (687)
Q Consensus 417 ~CP~C~~-~l~~~~~~~~~~C~n 438 (687)
.||.|++ +|+.......+.|.+
T Consensus 7 ~CP~C~~~~l~~d~~~gelvC~~ 29 (50)
T 1pft_A 7 VCPACESAELIYDPERGEIVCAK 29 (50)
T ss_dssp SCTTTSCCCEEEETTTTEEEESS
T ss_pred eCcCCCCcceEEcCCCCeEECcc
Confidence 5999999 898877667899976
No 179
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=69.76 E-value=3.4 Score=43.64 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=45.4
Q ss_pred HHHHHhhhhhcccccccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHH
Q psy11422 444 IAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLA 510 (687)
Q Consensus 444 ~~q~~~~i~~F~sr~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~ 510 (687)
|....+.|... ..=+++|+|+++.++|-..| |.|+.||..+..+.|... ||......+++.
T Consensus 168 ~~~~~~~L~~l---pv~~l~GiG~~~~~~L~~~G-i~t~~dL~~~~~~~L~~~--fG~~~g~~l~~~ 228 (352)
T 1jx4_A 168 DEEVKRLIREL---DIADVPGIGNITAEKLKKLG-INKLVDTLSIEFDKLKGM--IGEAKAKYLISL 228 (352)
T ss_dssp HHHHHHHHHHS---BGGGSTTCCHHHHHHHHTTT-CCBGGGGGSSCHHHHHHH--HCHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCCcccccCHHHHHHHHHcC-CchHHHHHCCCHHHHHHh--cChhHHHHHHHH
Confidence 34444444433 35579999999999997777 799999999998888875 887656666554
No 180
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=69.34 E-value=10 Score=40.21 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=40.7
Q ss_pred HHHHHCCCCCChHHHhcCChhhhhcc---cCccHHHHHHHHHHHHHccc---CCHHHHHHH-cCCCCCCHHHHHHHHh
Q psy11422 471 EKLVNANIVVTAVDLYKINFKNLLRL---DRVSNKLANNILLAIQKSKL---TTFSRFIYA-LGIRHVGETTAKELAN 541 (687)
Q Consensus 471 ~~L~~~g~I~~i~DL~~L~~~~L~~l---~gfG~Ksa~~Ll~~Ie~sk~---~~l~r~L~a-LGIp~vG~~~Ak~La~ 541 (687)
..|++. .-|+.+|..++.++|.++ =||.. +|.+|.+.-+.-.+ ..+...... +.+||||+.+|..++.
T Consensus 62 ~~l~~~--~pt~~~la~a~~~~l~~~i~~~G~~~-ra~~l~~~a~~~~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~ 136 (369)
T 3fsp_A 62 EQFIDR--FPTLEALADADEDEVLKAWEGLGYYS-RVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLS 136 (369)
T ss_dssp HHHHHH--CCSHHHHHTSCHHHHHHTTTTSSCTH-HHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHH--CCCHHHHHCCCHHHHHHHHHhcChHH-HHHHHHHHHHHHHHHcCCCChhHHHHHhcCCCcCHHHHHHHHH
Confidence 345543 258999999988887542 36665 67777765543211 111111222 3688999888886664
No 181
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=68.65 E-value=2.9 Score=34.09 Aligned_cols=22 Identities=18% Similarity=0.788 Sum_probs=19.1
Q ss_pred CCCCCCCcceeecCceeEEecC
Q psy11422 417 ICPICNSKIIYIESNLIARCSG 438 (687)
Q Consensus 417 ~CP~C~~~l~~~~~~~~~~C~n 438 (687)
.||.|+++|....++..+.|.+
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~ 31 (70)
T 2js4_A 10 VCPVCKGRLEFQRAQAELVCNA 31 (70)
T ss_dssp BCTTTCCBEEEETTTTEEEETT
T ss_pred ECCCCCCcCEEeCCCCEEEcCC
Confidence 7999999999877777899976
No 182
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=67.72 E-value=4.2 Score=40.34 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=35.7
Q ss_pred HHHHHHHcCCCCCCHHHHHHHH---hhcCChHHHHhcC----HHHHh-cCCCCCHHHHHHHHHHHcc
Q psy11422 519 FSRFIYALGIRHVGETTAKELA---NYFKNLECMFKAT----EEQLL-NIPKIGSTTVKAFIKFINQ 577 (687)
Q Consensus 519 l~r~L~aLGIp~vG~~~Ak~La---~~f~sld~l~~As----~eeL~-~I~GIG~~~A~sI~~ff~~ 577 (687)
+...|..+|.+ .....|+.|. +.++++.++...+ .++|. +++|||+++|..+..|+..
T Consensus 87 L~~~Ir~~G~R-f~~~KA~~I~~~a~~ig~l~~~~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~~g~ 152 (219)
T 3n0u_A 87 LAEKLREVGHR-YPQKRAEFIVENRKLLGKLKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRNTGV 152 (219)
T ss_dssp HHHHHHHTTCS-SHHHHHHHHHHHGGGTTTHHHHHHSCHHHHHHHHHHHSTTCCHHHHHHHHHTTTC
T ss_pred HHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 34456666632 2244554433 3344555554443 46799 9999999999999876543
No 183
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=67.71 E-value=3.1 Score=33.79 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=18.9
Q ss_pred CCCCCCCcceeecCceeEEecC
Q psy11422 417 ICPICNSKIIYIESNLIARCSG 438 (687)
Q Consensus 417 ~CP~C~~~l~~~~~~~~~~C~n 438 (687)
.||.|+++|....++..+.|.+
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~ 31 (69)
T 2pk7_A 10 ACPICKGPLKLSADKTELISKG 31 (69)
T ss_dssp CCTTTCCCCEECTTSSEEEETT
T ss_pred eCCCCCCcCeEeCCCCEEEcCC
Confidence 7999999999776677899976
No 184
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=67.68 E-value=3.5 Score=43.60 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=40.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLA 510 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~ 510 (687)
.=+++|+|+++.++|-..| |.|+.||..+..+.|... ||......+++.
T Consensus 181 v~~l~GiG~~~~~~L~~~G-i~t~~dL~~~~~~~L~~~--fG~~~g~~l~~~ 229 (354)
T 3bq0_A 181 IDEIPGIGSVLARRLNELG-IQKLRDILSKNYNELEKI--TGKAKALYLLKL 229 (354)
T ss_dssp STTSTTCCHHHHHHHTTTT-CCBGGGGGGSCHHHHHHH--HCHHHHHHHHHH
T ss_pred cccccCcCHHHHHHHHHcC-CccHHHHhcCCHHHHHHH--HCHHHHHHHHHH
Confidence 4578999999999997766 799999999998888875 887656666554
No 185
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=67.62 E-value=3.1 Score=33.66 Aligned_cols=22 Identities=27% Similarity=0.854 Sum_probs=19.0
Q ss_pred CCCCCCCcceeecCceeEEecC
Q psy11422 417 ICPICNSKIIYIESNLIARCSG 438 (687)
Q Consensus 417 ~CP~C~~~l~~~~~~~~~~C~n 438 (687)
.||.|+++|....++..+.|.+
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~ 31 (68)
T 2hf1_A 10 VCPLCKGPLVFDKSKDELICKG 31 (68)
T ss_dssp BCTTTCCBCEEETTTTEEEETT
T ss_pred ECCCCCCcCeEeCCCCEEEcCC
Confidence 7999999999877677899976
No 186
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=66.35 E-value=3.3 Score=33.50 Aligned_cols=22 Identities=14% Similarity=0.444 Sum_probs=19.0
Q ss_pred CCCCCCCcceeecCceeEEecC
Q psy11422 417 ICPICNSKIIYIESNLIARCSG 438 (687)
Q Consensus 417 ~CP~C~~~l~~~~~~~~~~C~n 438 (687)
.||.|+++|....+...+.|.+
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~ 31 (68)
T 2jr6_A 10 VCPVTKGRLEYHQDKQELWSRQ 31 (68)
T ss_dssp BCSSSCCBCEEETTTTEEEETT
T ss_pred ECCCCCCcCeEeCCCCEEEcCC
Confidence 7999999999877677899976
No 187
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=66.23 E-value=20 Score=33.72 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=47.5
Q ss_pred HHHHHHhcCCEEcccccccccEEEEcCCCC-c-------cHHHHHHcCCeEEeHHHHHHHHhcc
Q psy11422 626 AIILIENLGGKVVNFISKNTNYLVKGQKPG-K-------KLEKAIKLNIKILDEKNFVKIVKGF 681 (687)
Q Consensus 626 ~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g-~-------Kl~kA~~lgI~Ii~E~~f~~~l~~~ 681 (687)
++..+..+|+++..--+.+++++|.--... . =+.+|++++++|++-+-..++|...
T Consensus 90 lkr~f~~LGA~I~~FFd~~VTiVIT~R~i~~~~~~~~~Dil~~A~~~~mKVW~yeK~~RFLkNL 153 (160)
T 3qbz_A 90 LKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKAARFLKNL 153 (160)
T ss_dssp HHHHHHTTTCEEESSCCTTCCEEEESSCSSCGGGSCTTSHHHHHHHTTCEEEEHHHHHHHHHTT
T ss_pred HHHHHHHcCCEeeeeccCCeEEEEecCcCcccccCCchhHHHHHHHcCceecchHHHHHHHHhc
Confidence 556778999999999999999999876533 2 3899999999999999998888653
No 188
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=66.06 E-value=4.7 Score=44.98 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=40.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILL 509 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~ 509 (687)
.=++.|+|+++.++|-..| |.++.||..+..+.|... ||.+....|++
T Consensus 317 V~~l~GIG~~t~~kL~~lG-I~TigDLa~~~~~~L~~~--fG~~~g~~L~~ 364 (504)
T 3gqc_A 317 VTNLPGVGHSMESKLASLG-IKTCGDLQYMTMAKLQKE--FGPKTGQMLYR 364 (504)
T ss_dssp GGGSTTCCHHHHHHHHHTT-CCBHHHHTTSCHHHHHHH--HCHHHHHHHHH
T ss_pred hhHhhCcCHHHHHHHHHcC-CCcHHHHHhccHHHHHHh--hChhHHHHHHH
Confidence 4578999999999999888 699999999999888875 88876666653
No 189
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=65.20 E-value=15 Score=33.95 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=64.3
Q ss_pred HHHHHHHHCCCCCChHHHh--cCChhhhhcccCcc-HHHHHHHHHHHHHcccC-----------CHHHHHHHcCCCCCCH
Q psy11422 468 KMIEKLVNANIVVTAVDLY--KINFKNLLRLDRVS-NKLANNILLAIQKSKLT-----------TFSRFIYALGIRHVGE 533 (687)
Q Consensus 468 k~i~~L~~~g~I~~i~DL~--~L~~~~L~~l~gfG-~Ksa~~Ll~~Ie~sk~~-----------~l~r~L~aLGIp~vG~ 533 (687)
.-...|.++|+ .+...+- .|+.+||..+ |+. ..--.+|+.+|+.-+.. ++..||.++|++.
T Consensus 28 ~Y~~~F~~~g~-d~~~~l~~~~lt~~DL~~l-GI~~~ghRkkil~ai~~L~~~~~~~~d~~~~~~v~~WL~~i~L~q--- 102 (148)
T 2kiv_A 28 QYENHLMANGF-DNVQAMGSNVMEDQDLLEI-GILNSGHRQRILQAIQLLPKMRPIGHDGAHPTSVAEWLDSIELGD--- 102 (148)
T ss_dssp TSHHHHHHTTT-TBGGGGTSSCCCHHHHHHH-CCSSTTSHHHHHHHHHHCSCCCSSCCCCCCCSSHHHHHHTTTCCT---
T ss_pred HHHHHHHHcCC-CHHHHhhhccCCHHHHHHC-CCCCHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHCCcHH---
Confidence 45577778785 5555555 7999999877 555 34567888999875531 5678999999874
Q ss_pred HHHHHHHhhcCChHHHHhcCHHHHhcCCCCC
Q psy11422 534 TTAKELANYFKNLECMFKATEEQLLNIPKIG 564 (687)
Q Consensus 534 ~~Ak~La~~f~sld~l~~As~eeL~~I~GIG 564 (687)
-.-.-..+.|.+++.+...+.++|.+--||.
T Consensus 103 Y~~~F~~~g~~~~~~l~~lt~~dLl~~lGI~ 133 (148)
T 2kiv_A 103 YTKAFLINGYTSMDLLKKIAEVELINVLKIN 133 (148)
T ss_dssp HHHHHHHHTCCSHHHHTSCCHHHHHHHTCCC
T ss_pred HHHHHHHcCCChHHHHHhCCHHHHHHhCCCC
Confidence 2333344557788999999999985554664
No 190
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=64.85 E-value=8.1 Score=40.57 Aligned_cols=50 Identities=8% Similarity=0.133 Sum_probs=39.1
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHH
Q psy11422 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNIL 508 (687)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll 508 (687)
..+.+||+|+..+++|.++| +.++.||..++.+++..+=|+.+...+.+.
T Consensus 162 pL~Qlp~i~~~~~~~l~~~~-i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~ 211 (339)
T 2q0z_X 162 YLKQLPHFTSEHIKRCTDKG-VESVFDIMEMEDEERNALLQLTDSQIADVA 211 (339)
T ss_dssp GGGGSTTCCHHHHHHHHHTT-CCSHHHHHHSCHHHHHHHHCCCHHHHHHHH
T ss_pred ceecCCCCCHHHHHHHHhcC-CCCHHHHHhCCHHHHHHHHCCCHHHHHHHH
Confidence 68899999999999999888 689999999988776665455554444444
No 191
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=64.65 E-value=3.2 Score=44.23 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=41.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLA 510 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~ 510 (687)
.=+++|+|+++.++|-..| |.|+.||..+..+.|... ||++....+++.
T Consensus 181 v~~l~GiG~~~~~~L~~~G-I~Ti~dL~~~~~~~L~~~--fG~~~g~~l~~~ 229 (362)
T 4f4y_A 181 IDEIPGIGSVLARRLNELG-IQKLRDILSKNYNELEKI--TGKAKALYLLKL 229 (362)
T ss_dssp STTSTTCCSTTHHHHHHTT-CCBGGGGTTSCHHHHHHH--HCHHHHHHHHHH
T ss_pred hhhccCCCHHHHHHHHHcC-CChHHHHhcCCHHHHHHH--hChHHHHHHHHH
Confidence 4478999999999999888 699999999998888875 898777766653
No 192
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=64.13 E-value=7.5 Score=38.42 Aligned_cols=57 Identities=25% Similarity=0.328 Sum_probs=33.1
Q ss_pred CHHHHHHHcCCCCCCHHHHHHHHhh--cCCh-HHHHhc-----CHHHHh-cCCCCCHHHHHHHHHHH
Q psy11422 518 TFSRFIYALGIRHVGETTAKELANY--FKNL-ECMFKA-----TEEQLL-NIPKIGSTTVKAFIKFI 575 (687)
Q Consensus 518 ~l~r~L~aLGIp~vG~~~Ak~La~~--f~sl-d~l~~A-----s~eeL~-~I~GIG~~~A~sI~~ff 575 (687)
.+..+|..+|.+. -...|+.|.+- ++.+ +.+... +.++|. +++|||+++|..+..+.
T Consensus 80 eL~~~Ir~~G~rf-~~~KA~~I~~~a~~~~l~~~~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~ 145 (214)
T 3fhf_A 80 ELEEKLKNLGHRF-YRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNV 145 (214)
T ss_dssp HHHHHHHHTTCTT-HHHHHHHHHHHGGGCCHHHHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHH-HHHHHHHHHHHHHhhHHHHHhcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 3455666666221 13345444322 2233 333332 246799 99999999999988764
No 193
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=63.43 E-value=4.4 Score=31.47 Aligned_cols=23 Identities=26% Similarity=0.702 Sum_probs=18.9
Q ss_pred CCCCCCCcceeecCceeEEecCCCCCC
Q psy11422 417 ICPICNSKIIYIESNLIARCSGSWIEC 443 (687)
Q Consensus 417 ~CP~C~~~l~~~~~~~~~~C~n~~~~C 443 (687)
.||.|.++|+..+ ..+.|.|+ . |
T Consensus 12 ~CP~c~~~L~~~~--~~L~C~~~-~-c 34 (56)
T 2kpi_A 12 ACPACHAPLEERD--AELICTGQ-D-C 34 (56)
T ss_dssp CCSSSCSCEEEET--TEEEECSS-S-C
T ss_pred eCCCCCCcceecC--CEEEcCCc-C-C
Confidence 7999999998776 46899974 4 7
No 194
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=63.30 E-value=1.5 Score=45.73 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=0.0
Q ss_pred ccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 461 NIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 461 ~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
..+||++.++++|-++|+ .|+.|+...+..+|..+.|+.+..++++++...+
T Consensus 16 ~l~g~~~~~~~~l~~~g~-~t~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~ 67 (324)
T 2z43_A 16 DLPGISQTVINKLIEAGY-SSLETLAVASPQDLSVAAGIPLSTAQKIIKEARD 67 (324)
T ss_dssp -----------------------------------------------------
T ss_pred HcCCCCHHHHHHHHHcCC-CcHHHHHcCCHHHHHHhhCCCHHHHHHHHHHHHh
Confidence 456999999999999885 8999999999999999999999999999887643
No 195
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=63.27 E-value=9.4 Score=48.89 Aligned_cols=55 Identities=7% Similarity=0.108 Sum_probs=46.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
..+.|||+|+.++++|+++| |+|+.||..++.+++..+=++.+....++.+.++.
T Consensus 1558 ~L~qip~i~~~~ar~l~~~g-i~t~~dl~~~~~~~~~~ll~~~~~~~~~i~~~~~~ 1612 (1724)
T 4f92_B 1558 YLKQLPHFTSEHIKRCTDKG-VESVFDIMEMEDEERNALLQLTDSQIADVARFCNR 1612 (1724)
T ss_dssp GGGGSTTCCHHHHHHHHHHT-CCSHHHHHSSCHHHHTTSSCCCHHHHHHHHHHHHH
T ss_pred CEecCCCCCHHHHHHHHHCC-CCCHHHHHhCCHHHHHHHHCCChHHHHHHHHHHHh
Confidence 46789999999999999999 59999999999999988878887777777766554
No 196
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=62.82 E-value=4.5 Score=41.49 Aligned_cols=44 Identities=23% Similarity=0.608 Sum_probs=29.4
Q ss_pred CCCEEE----EEecCCccceeeccccCCC-CC-------CCccccCCCCCCCCCCc
Q psy11422 381 IGDTVV----VHRSGNVIPKITSSILSLR-PN-------DSKIFKIPNICPICNSK 424 (687)
Q Consensus 381 iGd~V~----v~raGdVIP~I~~vv~~~r-~~-------~~~~~~~P~~CP~C~~~ 424 (687)
+|-.|. |+|+++|.|++......-. .+ ....+..|..||.|++.
T Consensus 110 igkLV~v~GiV~r~S~V~p~~~~~~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~ 165 (279)
T 1ltl_A 110 IGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAVTQSTNMITEPSLCSECGGR 165 (279)
T ss_dssp TTSEEEEEEEEEEECCCEEEEEEEEEEETTTCCEEEEECSSSSCCCCSCCTTTCCC
T ss_pred CCCEEEEEEEEEEecceEEEEEEEEEEcCCCCCEEEEEecCCcccCCCcCCCCCCC
Confidence 566664 6799999999987753221 11 12245678889999874
No 197
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=62.66 E-value=4.4 Score=32.67 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=19.2
Q ss_pred CCCCCCCCcceeecCceeEEecC
Q psy11422 416 NICPICNSKIIYIESNLIARCSG 438 (687)
Q Consensus 416 ~~CP~C~~~l~~~~~~~~~~C~n 438 (687)
-.||.|.++|.....+..+.|.+
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~~ 33 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNER 33 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEETT
T ss_pred hCCCCCCCcCeEeCCCCEEEcCC
Confidence 37999999999876667899976
No 198
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=62.53 E-value=3.9 Score=47.17 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=39.1
Q ss_pred HHHcCCCCCCHHHHHHHHhh-cCChHHHHhcCHHHHhcCCCCCHHHHHHHHHHH
Q psy11422 523 IYALGIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575 (687)
Q Consensus 523 L~aLGIp~vG~~~Ak~La~~-f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ff 575 (687)
+.-+.|||||..+|+.|.+. |.++..|. ++.+++.++- |+++++++.+..
T Consensus 657 ~~L~qlp~i~~~rar~L~~~g~~s~~~l~-~~~~~l~~~l--~~~~~~~i~~~~ 707 (715)
T 2va8_A 657 LELVQISGVGRKRARLLYNNGIKELGDVV-MNPDKVKNLL--GQKLGEKVVQEA 707 (715)
T ss_dssp HHHHTSTTCCHHHHHHHHHTTCCSHHHHH-HCHHHHHHHH--CHHHHHHHHHHH
T ss_pred cchhhCCCCCHHHHHHHHHcCCCCHHHHh-CCHHHHHHHh--ChhHHHHHHHHH
Confidence 33358999999999988754 78999999 9999998883 366666666543
No 199
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=62.18 E-value=4.2 Score=43.05 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHh
Q psy11422 527 GIRHVGETTAKELANYFKNLECMFK 551 (687)
Q Consensus 527 GIp~vG~~~Ak~La~~f~sld~l~~ 551 (687)
||||||+++|..|.+.|++++++..
T Consensus 236 gipGiG~KtA~kll~~~gsle~i~~ 260 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQKHKSIEEIVR 260 (341)
T ss_dssp CCTTCCHHHHHHHHHHHCSHHHHHH
T ss_pred CCCCccHHHHHHHHHHcCCHHHHHH
Confidence 7899999999999999999988765
No 200
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=60.13 E-value=8.8 Score=35.19 Aligned_cols=88 Identities=15% Similarity=0.192 Sum_probs=59.5
Q ss_pred EEECChhhhhhhCC---CCCCCCceEeecCCCceeeEE-------EEEEEEeecCcceeeeE-EEEEEEEE----CCEEE
Q psy11422 299 YKINCLSTQKKLGF---TSRAPRFALAYKFLSKEALTK-------IKAINIQIGRTGIITPV-ALLKPVLI----DGITI 363 (687)
Q Consensus 299 ikv~~~~~~~~lG~---ts~~PrwaiA~Kf~~~~~~T~-------v~~I~~qvGRTG~iTPv-A~lePV~l----~G~tV 363 (687)
+.+-+...++..|- ++-.|.-++-|.||..+..|- =+||.| +.+.|+|+-+ ..+.|-.. ++..+
T Consensus 24 vevA~t~~~R~~GLM~R~~l~~~~GMLF~f~~~~~~~fwMknt~~PLDiiF-ld~~g~Vv~i~~~~~P~~~~~~~~~~~a 102 (136)
T 3pjy_A 24 VELAVDPSQREQGLMYRRQMAPDHGMLFDFGETRPVMMWMKNTYLPLDMLF-IASDGTIRTIHENAVPHSEAIIDSREPV 102 (136)
T ss_dssp EEEECSHHHHHHTTSSCCCCCTTEEEEEEEEEEECCEECCTTCCSCEEEEE-ECTTSBEEEEEEEECTTCCCCEECCSCE
T ss_pred EEEcCCHHHHHhccCCCCCCCCCceEEEecCCCceEEEEeeccccceEEEE-ECCCCEEEEEEccCCCCcCCCCCCCCce
Confidence 45556666666663 333556778888877665542 245555 5678898888 67777543 33345
Q ss_pred EEecCCCHHHHHhcCCCCCCEEEE
Q psy11422 364 TRATLHNESEIYRKNIQIGDTVVV 387 (687)
Q Consensus 364 sraTLhN~~~i~~~~i~iGd~V~v 387 (687)
..|==-|.++++++||.+||+|.+
T Consensus 103 ~~VLEl~aG~~~~~gi~~Gd~v~~ 126 (136)
T 3pjy_A 103 AYVLELNAGTVKRLGVSPGDRLEG 126 (136)
T ss_dssp EEEEEEETTHHHHHTCCTTCEEEE
T ss_pred eEEEEeCcChHHhcCCCCCCEEEE
Confidence 555555899999999999999975
No 201
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=60.06 E-value=10 Score=35.69 Aligned_cols=14 Identities=7% Similarity=0.214 Sum_probs=7.9
Q ss_pred CCCCCCHHHHHHHH
Q psy11422 527 GIRHVGETTAKELA 540 (687)
Q Consensus 527 GIp~vG~~~Ak~La 540 (687)
.+||||+.+|..++
T Consensus 108 ~LpGVG~yTAdav~ 121 (161)
T 4e9f_A 108 ELHGIGKYGNDSYR 121 (161)
T ss_dssp GSTTCCHHHHHHHH
T ss_pred cCCCchHHHHHHHH
Confidence 45666666665544
No 202
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=60.06 E-value=5.1 Score=40.73 Aligned_cols=43 Identities=21% Similarity=0.459 Sum_probs=28.9
Q ss_pred CCCEEE----EEecCCccceeeccccCC--C-CC----------CCccccCCCCCCCCCC
Q psy11422 381 IGDTVV----VHRSGNVIPKITSSILSL--R-PN----------DSKIFKIPNICPICNS 423 (687)
Q Consensus 381 iGd~V~----v~raGdVIP~I~~vv~~~--r-~~----------~~~~~~~P~~CP~C~~ 423 (687)
+|-.|. |+|+++|.|++......- . .+ ....+..|..||.|++
T Consensus 117 igkLV~v~GiV~r~S~V~p~~~~~~f~C~~~~C~~~~~~~~~~~~~~~~~~P~~Cp~C~~ 176 (268)
T 2vl6_A 117 IGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGK 176 (268)
T ss_dssp TTSEEEEEEEEEEECCCEEEEEECEEEEECTTCCCEEESSTTSCCCTTCCCCSBCTTTCC
T ss_pred CCCeEEEEEEEEEcCCcceEeEEEEEECCCCCCCCEEeeeecccCCCcccCCccCCCCCC
Confidence 566664 779999999998776433 1 11 1223567788888887
No 203
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=59.66 E-value=1.9 Score=45.48 Aligned_cols=49 Identities=16% Similarity=0.086 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 464 GLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 464 GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
.|.-....-|-.+| |.++.||...++++|+++++||+||.+.|.+.+++
T Consensus 261 eLsvRs~NCLKra~-I~tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~~ 309 (329)
T 3lu0_A 261 ELTVRSANCLKAEA-IHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS 309 (329)
T ss_dssp --------------------------------------------------
T ss_pred cCCHHHHHHHHHcC-CcCHHHHhhCCHHHHhhCcCCChhhHHHHHHHHHH
Confidence 34444555565565 79999999999999999999999999998887754
No 204
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=59.33 E-value=8.1 Score=40.35 Aligned_cols=51 Identities=12% Similarity=0.189 Sum_probs=43.2
Q ss_pred cCCCCCCHHHHHHHHhh-cCChHHHHhcCHHHHhcCCCCCHHHHHHHHHHHc
Q psy11422 526 LGIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576 (687)
Q Consensus 526 LGIp~vG~~~Ak~La~~-f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ff~ 576 (687)
+.+||+|+..++++.++ +.++..|..++.+++.++-|+++..+..+.++.+
T Consensus 160 ~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~ 211 (328)
T 3im1_A 160 RQIPHFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVN 211 (328)
T ss_dssp GGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHH
Confidence 57899999999988754 6799999999999999988998888888777664
No 205
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=59.04 E-value=16 Score=37.22 Aligned_cols=32 Identities=19% Similarity=0.097 Sum_probs=24.1
Q ss_pred CChHHHhcCChhhhhcccCccHHHHHHHHHHHH
Q psy11422 480 VTAVDLYKINFKNLLRLDRVSNKLANNILLAIQ 512 (687)
Q Consensus 480 ~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie 512 (687)
-++++|..++.++|..+ ||...+|..|.+.-+
T Consensus 156 Ptp~~la~~~~~~Lr~~-G~~~~ra~~i~~~A~ 187 (282)
T 1mpg_A 156 PTPQRLAAADPQALKAL-GMPLKRAEALIHLAN 187 (282)
T ss_dssp CCHHHHHTCCHHHHHHT-TSCHHHHHHHHHHHH
T ss_pred CCHHHHHcCCHHHHHHc-CCCHHHHHHHHHHHH
Confidence 58899999998888766 786677777766543
No 206
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=58.79 E-value=5.4 Score=43.52 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=39.2
Q ss_pred ccccCCCCHHHHHHHHH--CCCCCChHHHhcC-ChhhhhcccCccHHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVN--ANIVVTAVDLYKI-NFKNLLRLDRVSNKLANNILL 509 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~--~g~I~~i~DL~~L-~~~~L~~l~gfG~Ksa~~Ll~ 509 (687)
.=+++|+|+++.++|-. .| |.++.||..+ ..+.|... ||.+....+++
T Consensus 243 v~~l~GiG~~~~~~L~~~~~G-I~ti~dL~~~~~~~~L~~~--fG~~~g~~l~~ 293 (434)
T 2aq4_A 243 LDDLPGVGHSTLSRLESTFDS-PHSLNDLRKRYTLDALKAS--VGSKLGMKIHL 293 (434)
T ss_dssp GGGSTTCCHHHHHHHHHHTTC-CCSHHHHHHHCCHHHHHHH--HCSSHHHHHHH
T ss_pred cccccCcCHHHHHHHHHhcCC-ceEHHHHHhcCCHHHHHHH--hCHHHHHHHHH
Confidence 45789999999999999 66 7999999998 88888875 78766665554
No 207
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=55.32 E-value=2.7 Score=41.07 Aligned_cols=37 Identities=14% Similarity=0.002 Sum_probs=22.9
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHhcCHHHHhc-CCCCCHH
Q psy11422 527 GIRHVGETTAKELANYFKNLECMFKATEEQLLN-IPKIGST 566 (687)
Q Consensus 527 GIp~vG~~~Ak~La~~f~sld~l~~As~eeL~~-I~GIG~~ 566 (687)
.+||||++.|+.|.+.=. .=.-.+.+||.+ +.|||..
T Consensus 136 ~LpGIG~k~A~~IIeyRe---~G~F~s~eDL~~RV~GIg~~ 173 (205)
T 2i5h_A 136 LLPGVGKKMMWAIIEERK---KRPFESFEDIAQRVKGIQRP 173 (205)
T ss_dssp GSTTCCHHHHHHHHHHHH---HSCCCSHHHHHHHSTTCCCH
T ss_pred cCCCcCHHHHHHHHHHHh---cCCCCCHHHHHHhcCCCCcc
Confidence 478888888887764310 001125577765 8887754
No 208
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=55.28 E-value=17 Score=37.26 Aligned_cols=49 Identities=22% Similarity=0.263 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHhh-cCChHHHHhcCHHHHhcCCCCCHHHHHHHHHHH
Q psy11422 527 GIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575 (687)
Q Consensus 527 GIp~vG~~~Ak~La~~-f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ff 575 (687)
.+||+++..+++|.+. +.+++.+..++..+|.++.|+++..|..+....
T Consensus 7 ~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a 56 (322)
T 2i1q_A 7 DLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGA 56 (322)
T ss_dssp TSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHH
Confidence 4678899999888754 889999999999999999999998888776543
No 209
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=54.75 E-value=4.8 Score=39.64 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=16.2
Q ss_pred hhhhcccCccHHHHHHHHHHH
Q psy11422 491 KNLLRLDRVSNKLANNILLAI 511 (687)
Q Consensus 491 ~~L~~l~gfG~Ksa~~Ll~~I 511 (687)
+.|..|||+|+|+|++|.-.+
T Consensus 26 ~~l~~LPGIG~KsA~RlA~hL 46 (212)
T 3vdp_A 26 EELSKLPGIGPKTAQRLAFFI 46 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHH
Confidence 457788888888888887655
No 210
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=53.88 E-value=5.8 Score=39.65 Aligned_cols=28 Identities=21% Similarity=0.476 Sum_probs=19.1
Q ss_pred CCCCCCCC-cceeecC---ceeEEecCCCCCCHHHH
Q psy11422 416 NICPICNS-KIIYIES---NLIARCSGSWIECIAQR 447 (687)
Q Consensus 416 ~~CP~C~~-~l~~~~~---~~~~~C~n~~~~C~~q~ 447 (687)
..||.||+ +|..-+. -++++|++ |.++.
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaDF~C~~----C~Eey 66 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVADFYCNH----CSEEF 66 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCEEECTT----TCCEE
T ss_pred CcCCCCCChhhhhccCCCcccccccCC----cchhh
Confidence 48999999 5754332 37899987 86654
No 211
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=53.66 E-value=2.7 Score=44.03 Aligned_cols=47 Identities=17% Similarity=0.347 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHH
Q psy11422 465 LGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQ 512 (687)
Q Consensus 465 LG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie 512 (687)
|.-....-|-.+| |.++.||...++++|++++.||.||.+.|.+.++
T Consensus 261 LsvRs~NcLk~a~-I~ti~dL~~~se~~l~~~~n~G~kSl~Ei~~~L~ 307 (315)
T 2a6h_A 261 LSTRVLHSLKEEG-IESVRALLALNLKDLKNIPGIGERSLEEIKEALE 307 (315)
T ss_dssp ------------------------------------------------
T ss_pred CcHHHHHHHHHcC-CcCHHHHhhCCHHHHhcCCCCCcchHHHHHHHHH
Confidence 4455555555555 7999999999999999999999999999988775
No 212
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=53.35 E-value=5.4 Score=33.53 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=18.9
Q ss_pred CCCCCCCCCcceeecCceeEEecC
Q psy11422 415 PNICPICNSKIIYIESNLIARCSG 438 (687)
Q Consensus 415 P~~CP~C~~~l~~~~~~~~~~C~n 438 (687)
.-.||.||..++...+...|.|..
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~ 50 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSY 50 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETT
T ss_pred cCcCCCCCCcceeccCCCeEECCC
Confidence 347999999888776667889965
No 213
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=53.03 E-value=4.6 Score=43.18 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHhc
Q psy11422 527 GIRHVGETTAKELANYFKNLECMFKA 552 (687)
Q Consensus 527 GIp~vG~~~Ak~La~~f~sld~l~~A 552 (687)
||||||+++|-.|.+.|+|++++...
T Consensus 255 GVpGIG~KtA~kLl~~~gsle~il~~ 280 (363)
T 3ory_A 255 GFEGIGPKKALQLVKAYGGIEKIPKP 280 (363)
T ss_dssp CSTTCCHHHHHHHHHHHTSSTTSCGG
T ss_pred CCCCcCHHHHHHHHHHcCCHHHHHHh
Confidence 88899999999999999999887653
No 214
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=52.85 E-value=6.5 Score=30.38 Aligned_cols=24 Identities=21% Similarity=0.509 Sum_probs=17.5
Q ss_pred CCCCCCCCCcceeecCceeEEecC
Q psy11422 415 PNICPICNSKIIYIESNLIARCSG 438 (687)
Q Consensus 415 P~~CP~C~~~l~~~~~~~~~~C~n 438 (687)
-..||.||+.+........++|..
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~k 41 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGR 41 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTT
T ss_pred cccCcCCCCceeEeccCCEEECCC
Confidence 468999999766444446789965
No 215
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=52.08 E-value=15 Score=33.91 Aligned_cols=87 Identities=16% Similarity=0.049 Sum_probs=54.4
Q ss_pred EEECChhhhhhhCC---CCCCCCceEeecCCCceeeEE-------EEEEEEeecCcceeeeEEE-EEEEEECC----EEE
Q psy11422 299 YKINCLSTQKKLGF---TSRAPRFALAYKFLSKEALTK-------IKAINIQIGRTGIITPVAL-LKPVLIDG----ITI 363 (687)
Q Consensus 299 ikv~~~~~~~~lG~---ts~~PrwaiA~Kf~~~~~~T~-------v~~I~~qvGRTG~iTPvA~-lePV~l~G----~tV 363 (687)
+.+-+...++..|. ++-.|.-++-|-||.....|- =+||.| +.+.|+|+-+.+ +.|-...- ..+
T Consensus 38 vevA~t~~~R~~GLM~R~~l~~~~GMLFvf~~~~~~~fwMknt~~PLDiiF-id~dg~Vv~i~~~~~P~~~~~~~s~~~a 116 (140)
T 3m7a_A 38 SELARTSAEQAKGLMFRTELGDEEGMIFLRNPPDMATFWMRNTVIPLDIIF-VGLDRRVMNIAANAVPYDETPLPAAGPT 116 (140)
T ss_dssp EEEECSHHHHHHTTTTCCCCCTTEEEEEECSSCCEEEECCTTCCSCEEEEE-ECTTSBEEEEEEEECTTCCCCEEEEEEC
T ss_pred EEEcCCHHHHHhccCCCCCCCCCceEEEecCCCceEEEEeeccCcceEEEE-ECCCCeEEEEEccCCCCcCCCCCCCCcc
Confidence 34445555555552 333455677777776655442 134444 567888888876 77754422 223
Q ss_pred EEecCCCHHHHHhcCCCCCCEEE
Q psy11422 364 TRATLHNESEIYRKNIQIGDTVV 386 (687)
Q Consensus 364 sraTLhN~~~i~~~~i~iGd~V~ 386 (687)
..|==-|.++++++||.+||+|.
T Consensus 117 ~~VLEl~aG~~~~~gi~~Gd~v~ 139 (140)
T 3m7a_A 117 LAVLEINGGLAARLGIKPGDKVE 139 (140)
T ss_dssp SEEEEEETTHHHHHTCCTTCEEE
T ss_pred cEEEEeCcChHHHcCCCCCCEEe
Confidence 33333488999999999999985
No 216
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=51.98 E-value=6.3 Score=41.68 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=18.6
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHhc
Q psy11422 527 GIRHVGETTAKELANYFKNLECMFKA 552 (687)
Q Consensus 527 GIp~vG~~~Ak~La~~f~sld~l~~A 552 (687)
||||||+++|-.|.+.|++++++...
T Consensus 238 Gv~GIG~KtA~kLi~~~gsle~i~~~ 263 (346)
T 2izo_A 238 GIRGIGPERALKIIKKYGKIEKAMEY 263 (346)
T ss_dssp CSTTCCHHHHHHHHHHSSCC------
T ss_pred CCCCcCHHHHHHHHHHcCCHHHHHHH
Confidence 78899999999999999999888654
No 217
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=51.86 E-value=16 Score=29.90 Aligned_cols=33 Identities=12% Similarity=0.282 Sum_probs=28.4
Q ss_pred hcCChHHHHhcCHHHHhcCCCCCHHHHHHHHHH
Q psy11422 542 YFKNLECMFKATEEQLLNIPKIGSTTVKAFIKF 574 (687)
Q Consensus 542 ~f~sld~l~~As~eeL~~I~GIG~~~A~sI~~f 574 (687)
.+.++.+|...+.++|.+++|+|++..+.|.+.
T Consensus 28 gI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~ 60 (73)
T 1z3e_B 28 GINTVQELANKTEEDMMKVRNLGRKSLEEVKAK 60 (73)
T ss_dssp TCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHH
Confidence 366889999999999999999999888777653
No 218
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=51.68 E-value=16 Score=30.94 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=28.5
Q ss_pred hcCChHHHHhcCHHHHhcCCCCCHHHHHHHHHH
Q psy11422 542 YFKNLECMFKATEEQLLNIPKIGSTTVKAFIKF 574 (687)
Q Consensus 542 ~f~sld~l~~As~eeL~~I~GIG~~~A~sI~~f 574 (687)
.+.++.+|...+.++|.+++++|++..+.|.+.
T Consensus 31 gI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~ 63 (86)
T 3k4g_A 31 AIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDV 63 (86)
T ss_dssp TCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHhCCHHHHhhccccCcccHHHHHHH
Confidence 467899999999999999999999888777654
No 219
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=51.45 E-value=2.4 Score=44.11 Aligned_cols=16 Identities=6% Similarity=0.285 Sum_probs=14.1
Q ss_pred CCCHHHHHHHHHHHcc
Q psy11422 562 KIGSTTVKAFIKFINQ 577 (687)
Q Consensus 562 GIG~~~A~sI~~ff~~ 577 (687)
.||+.++..|+.||..
T Consensus 287 ~IG~~lSrkI~~~f~~ 302 (307)
T 2zix_A 287 NLGPALSRTLSQLYCS 302 (307)
T ss_dssp CCCHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHcc
Confidence 3999999999999964
No 220
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=51.31 E-value=6.6 Score=42.87 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=38.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILL 509 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~ 509 (687)
.=++.|+|+++..+|.+...|.++.||..+....|... ||++....|++
T Consensus 255 v~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~~~--fG~~~g~~L~~ 303 (435)
T 4ecq_A 255 IRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSH--FGEKNGSWLYA 303 (435)
T ss_dssp GGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHHHH--HCHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHHHH--hCccHHHHHHH
Confidence 44789999999888544444799999999999888875 88777766653
No 221
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=51.03 E-value=11 Score=41.42 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=36.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILL 509 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~ 509 (687)
.=+|+|+|+++.++|-..| |.++.||..+. ..|.. .||++.+..|++
T Consensus 284 v~~l~GiG~~~~~~L~~lG-I~T~gdL~~~~-~~L~~--~fG~~~~~~l~~ 330 (459)
T 1t94_A 284 IRKVSGIGKVTEKMLKALG-IITCTELYQQR-ALLSL--LFSETSWHYFLH 330 (459)
T ss_dssp GGGCTTSCHHHHHHHHHTT-CCBHHHHHHTH-HHHHH--HSCHHHHHHHHH
T ss_pred HHhcCCcCHHHHHHHHHcC-CCcHHHHHhhH-HHHHH--HhChHhHHHHHH
Confidence 4479999999999997766 69999999974 55665 488877765554
No 222
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=49.45 E-value=5.9 Score=39.39 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=14.4
Q ss_pred CCCccCCeEEEEEcCCCc
Q psy11422 603 NKNYLKEKIFVFTGSLYA 620 (687)
Q Consensus 603 ~~~~l~g~~vv~TG~l~~ 620 (687)
.++.+.|..+|+-|.++.
T Consensus 96 ~t~~y~G~YhVLgG~lSP 113 (228)
T 1vdd_A 96 RSGEYRGLYHVLHGVLSP 113 (228)
T ss_dssp TTSSCCSEEEECSSCCBG
T ss_pred HhcccceEEEecCCccCc
Confidence 456789999999998764
No 223
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=48.79 E-value=25 Score=34.24 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.0
Q ss_pred CHHHHhcCCCCCHHHHHHHHHHH
Q psy11422 553 TEEQLLNIPKIGSTTVKAFIKFI 575 (687)
Q Consensus 553 s~eeL~~I~GIG~~~A~sI~~ff 575 (687)
..++|.+++|||+++|..|..|+
T Consensus 115 ~~~~L~~lpGIG~kTA~~il~~~ 137 (207)
T 3fhg_A 115 ARERLLNIKGIGMQEASHFLRNV 137 (207)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHcCCCcCHHHHHHHHHHh
Confidence 34789999999999999998873
No 224
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=48.53 E-value=13 Score=28.94 Aligned_cols=27 Identities=11% Similarity=-0.025 Sum_probs=19.3
Q ss_pred ccCCCCCCCCCC-cceeecCceeEEecC
Q psy11422 412 FKIPNICPICNS-KIIYIESNLIARCSG 438 (687)
Q Consensus 412 ~~~P~~CP~C~~-~l~~~~~~~~~~C~n 438 (687)
+.-...||.|++ +|+.......+.|.+
T Consensus 8 ll~~~~Cp~C~~~~lv~D~~~ge~vC~~ 35 (58)
T 1dl6_A 8 ALPRVTCPNHPDAILVEDYRAGDMICPE 35 (58)
T ss_dssp CCSCCSBTTBSSSCCEECSSSCCEECTT
T ss_pred ccccccCcCCCCCceeEeCCCCeEEeCC
Confidence 333447999998 677665556789976
No 225
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=48.19 E-value=13 Score=30.85 Aligned_cols=51 Identities=12% Similarity=0.190 Sum_probs=35.9
Q ss_pred HHHHHHcCCCCCCHHHHHHHH--hhcCChHHHHhcCHHHHhcCCCCCHHHHHHHHHH
Q psy11422 520 SRFIYALGIRHVGETTAKELA--NYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKF 574 (687)
Q Consensus 520 ~r~L~aLGIp~vG~~~Ak~La--~~f~sld~l~~As~eeL~~I~GIG~~~A~sI~~f 574 (687)
...+..|+++ .+|...+ ..+.++.+|...+.++|.+++++|++..+.|.+.
T Consensus 15 ~~~Ie~L~LS----~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~ 67 (79)
T 3gfk_B 15 EMTIEELDLS----VRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAK 67 (79)
T ss_dssp GCBGGGSCCB----HHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHH
T ss_pred cCcHHHhCCC----HHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHH
Confidence 3444455554 2343333 2467899999999999999999999888777553
No 226
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=46.99 E-value=9.1 Score=40.27 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=20.3
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHhc
Q psy11422 527 GIRHVGETTAKELANYFKNLECMFKA 552 (687)
Q Consensus 527 GIp~vG~~~Ak~La~~f~sld~l~~A 552 (687)
||||||+++|-.|.+.|++++++...
T Consensus 241 gv~GiG~ktA~kli~~~gsle~il~~ 266 (340)
T 1b43_A 241 GIKGIGLKKALEIVRHSKDPLAKFQK 266 (340)
T ss_dssp CSTTCCHHHHHHHHHTCSSGGGGTGG
T ss_pred CCCCccHHHHHHHHHHcCCHHHHHcC
Confidence 77888888888888888888777654
No 227
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=46.40 E-value=11 Score=40.19 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=23.1
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHhc
Q psy11422 527 GIRHVGETTAKELANYFKNLECMFKA 552 (687)
Q Consensus 527 GIp~vG~~~Ak~La~~f~sld~l~~A 552 (687)
||||||+++|-.|.+.|++++++...
T Consensus 236 ~IpGIG~KtA~kLl~~~gsle~i~~~ 261 (379)
T 1ul1_X 236 SIRGIGPKRAVDLIQKHKSIEEIVRR 261 (379)
T ss_dssp CCTTCCHHHHHHHHHHSSSHHHHHTT
T ss_pred CCCCcCHHHHHHHHHHcCCHHHHHHH
Confidence 59999999999999999999988754
No 228
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=46.29 E-value=26 Score=29.26 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=41.9
Q ss_pred cCC-CCCCHHHHHHHHh-hcCChHHHHhcCHHHHhcCCCCCHHHHHHHHHHH
Q psy11422 526 LGI-RHVGETTAKELAN-YFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575 (687)
Q Consensus 526 LGI-p~vG~~~Ak~La~-~f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ff 575 (687)
+|+ |++-+...++|.+ ...+...+..+++++|.++-|++-+.+..|+..+
T Consensus 6 ~~~~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l 57 (83)
T 2kz3_A 6 VGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVL 57 (83)
T ss_dssp TTSSTTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 355 7888888888875 4889999999999999999999988888776643
No 229
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=46.28 E-value=4.2 Score=42.78 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=0.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
.|.-.||++.++++|-++|+ .|+.|+...+..+|..+.|+.+..++++++...+
T Consensus 29 ~l~~~g~~~~~~~~l~~~g~-~t~~~~~~~~~~~l~~~~~is~~~~~~~~~~a~~ 82 (343)
T 1v5w_A 29 LLQKHGINVADIKKLKSVGI-CTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANK 82 (343)
T ss_dssp -------------------------------------------------------
T ss_pred HHhhCCCCHHHHHHHHHcCC-CcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHHh
Confidence 34445999999999999885 8999999999999999999999999998887643
No 230
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=44.35 E-value=24 Score=42.61 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=28.0
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHhcCHHHHhcCCCCCHHHHHHHHHHH
Q psy11422 527 GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575 (687)
Q Consensus 527 GIp~vG~~~Ak~La~~f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ff 575 (687)
-++|+|+..|+.|.++... ..=.-.+.++|..++|||+++-++...|+
T Consensus 721 ~v~GlGp~kA~~Iv~~r~~-~~G~f~sr~~L~~v~~iG~k~fe~~agfl 768 (1030)
T 3psf_A 721 YISGFGKRKAIDFLQSLQR-LNEPLLARQQLITHNILHKTIFMNSAGFL 768 (1030)
T ss_dssp GSTTCCHHHHHHHHHHHHH-TCSCCCCTTHHHHTTSSCHHHHHHHTTTE
T ss_pred hCCCCCHHHHHHHHHHHHH-hCCCCCCHHHHHhcCCccHHHHHhccCeE
Confidence 4677777777766643300 00011244667777777777777766665
No 231
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=44.26 E-value=12 Score=42.52 Aligned_cols=39 Identities=18% Similarity=0.448 Sum_probs=27.3
Q ss_pred EEEecCCccceeeccccCCCC-------------CCCccccCCCCCCCCCCc
Q psy11422 386 VVHRSGNVIPKITSSILSLRP-------------NDSKIFKIPNICPICNSK 424 (687)
Q Consensus 386 ~v~raGdVIP~I~~vv~~~r~-------------~~~~~~~~P~~CP~C~~~ 424 (687)
.|.|++.|.|++......... .....+..|..||.|++.
T Consensus 120 ~V~r~s~v~~~~~~~~~~C~~~~C~~~~~~~~~~~~~~~~~~p~~C~~C~~~ 171 (595)
T 3f9v_A 120 ILVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKP 171 (595)
T ss_dssp EEEEECCCEEEEEECCCEEESSSCCCBCCSSCSSCCCSSCCCCSSCTTTCCC
T ss_pred EEEEecCEEEEEEEEEEEecCCCCCCEEEEEeccccCCcccCCCcCCCCCCC
Confidence 467999999999887643221 112346679999999983
No 232
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=44.12 E-value=16 Score=40.89 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=34.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNIL 508 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll 508 (687)
.=+|+|+|+++.++|-..| |.|+.||+.+ ...|.. .||......++
T Consensus 340 V~kl~GIG~~t~~~L~~lG-I~TigDL~~~-~~~L~~--~fG~~~~~~l~ 385 (517)
T 3pzp_A 340 IRKVSGIGKVTEKMLKALG-IITCTELYQQ-RALLSL--LFSETSWHYFL 385 (517)
T ss_dssp GGGSTTCCHHHHHHHHHTT-CCBHHHHHHH-HHHHHH--HSCHHHHHHHH
T ss_pred hhhhccccHHHHHHHHHhC-CCcHHHHHhh-HHHHHH--HhChHHHHHHH
Confidence 4469999999999998777 6999999986 344544 38876665444
No 233
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=43.98 E-value=12 Score=35.68 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=31.6
Q ss_pred CCCCCCEEEEEecCCccceeeccccCCCCCCCccccCCCCCCCCCCcceeecCceeEEecC
Q psy11422 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438 (687)
Q Consensus 378 ~i~iGd~V~v~raGdVIP~I~~vv~~~r~~~~~~~~~P~~CP~C~~~l~~~~~~~~~~C~n 438 (687)
-+++||.|.+.=-. .+ +....+..+-. .+-..|+.||.+++... ..+.|++
T Consensus 111 ~~~~GD~V~akVi~---~~---i~LS~k~~~lG--vv~a~~~~~g~~m~~~~--~~~~cp~ 161 (179)
T 3m7n_A 111 AVGYLDILKARVIG---DN---LRLSTKEEEMG--VLRALCSNCKTEMVREG--DILKCPE 161 (179)
T ss_dssp TCCTTCEEEEEEEE---TT---TEEECCSTTCE--EEECBCTTTCCBCEECS--SSEECSS
T ss_pred cCCCCCEEEEEEEC---Ce---EEEEEecCCCC--EEEecccccCCceEECC--CEEECCC
Confidence 58899999865332 11 11121222211 24568999999998754 6899987
No 234
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=43.62 E-value=19 Score=37.89 Aligned_cols=49 Identities=24% Similarity=0.311 Sum_probs=40.6
Q ss_pred CCCCCCHHHHHHHHh-hcCChHHHHhcCHHHHhcCCCCCHHHHHHHHHHH
Q psy11422 527 GIRHVGETTAKELAN-YFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575 (687)
Q Consensus 527 GIp~vG~~~Ak~La~-~f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ff 575 (687)
.+||+++..+++|.+ .|.+++.+..++..+|.++.|+++..+..+.+..
T Consensus 39 ~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~ 88 (349)
T 1pzn_A 39 DLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAA 88 (349)
T ss_dssp CCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHH
Confidence 358999999988875 4889999999999999999999987777766543
No 235
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=43.45 E-value=15 Score=31.05 Aligned_cols=25 Identities=8% Similarity=0.158 Sum_probs=21.5
Q ss_pred CHHHHhcCCCCCHHHHHHHHHHHcc
Q psy11422 553 TEEQLLNIPKIGSTTVKAFIKFINQ 577 (687)
Q Consensus 553 s~eeL~~I~GIG~~~A~sI~~ff~~ 577 (687)
+..++..++|||+++++.|.+++..
T Consensus 56 s~~e~~~L~giG~ki~~~L~e~L~~ 80 (87)
T 2kp7_A 56 SGKEAKILQHFGDRLCRMLDEKLKQ 80 (87)
T ss_dssp SHHHHHTCTTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHhhcccHHHHHHHHHHHHH
Confidence 6788999999999999999887743
No 236
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=42.81 E-value=10 Score=33.44 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=19.1
Q ss_pred HHhcCCCCCCEEEEEecCCcccee
Q psy11422 374 IYRKNIQIGDTVVVHRSGNVIPKI 397 (687)
Q Consensus 374 i~~~~i~iGd~V~v~raGdVIP~I 397 (687)
|.-.+|.+||.|.| ++||.||-=
T Consensus 25 i~~~~l~~GDiv~v-~~G~~iPaD 47 (113)
T 2hc8_A 25 VPVEEVAVGDIVIV-RPGEKIPVD 47 (113)
T ss_dssp EEGGGCCTTCEEEE-CTTCBCCSE
T ss_pred EEHHHCCCCCEEEE-CCCCEEeee
Confidence 44568999999988 789999953
No 237
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=42.63 E-value=11 Score=44.20 Aligned_cols=56 Identities=21% Similarity=0.234 Sum_probs=35.6
Q ss_pred HHhcCChhhhhcccCccHHHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHHHHHHHHh
Q psy11422 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELAN 541 (687)
Q Consensus 484 DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~~Ak~La~ 541 (687)
||.+++.+.|..++|+|++.|++|++..++- -+|...-.-+.++|+|+++-..+..
T Consensus 501 diNtAs~~~L~~v~GiG~~~A~~Iv~yR~~~--G~f~sr~~L~~V~giG~k~~ekl~~ 556 (785)
T 3bzc_A 501 DVNTASAALLARISGLNSTLAQNIVAHRDAN--GAFRTRDELKKVSRLGEKTFEQAAG 556 (785)
T ss_dssp ETTTCCHHHHHTSTTCCHHHHHHHHHHHHHH--CCCSSGGGGGGSTTCCHHHHHHHGG
T ss_pred ccCcCCHHHHhhcCCCCHHHHHHHHHHHHhc--CCCCCHHHHHhcCCCCHHHHHHhhh
Confidence 6666778888888999999999988876652 2221111113566777666555443
No 238
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=41.38 E-value=8.6 Score=37.16 Aligned_cols=11 Identities=36% Similarity=1.186 Sum_probs=9.5
Q ss_pred CCCCCCCCCCc
Q psy11422 414 IPNICPICNSK 424 (687)
Q Consensus 414 ~P~~CP~C~~~ 424 (687)
+|+.||.||.+
T Consensus 170 ~p~~CP~C~~~ 180 (191)
T 1lko_A 170 APELCPACAHP 180 (191)
T ss_dssp CCSBCTTTCCB
T ss_pred CCCCCCCCcCC
Confidence 57899999985
No 239
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=41.31 E-value=7.2 Score=34.06 Aligned_cols=12 Identities=25% Similarity=0.971 Sum_probs=9.5
Q ss_pred CCCCCCCCCcce
Q psy11422 415 PNICPICNSKII 426 (687)
Q Consensus 415 P~~CP~C~~~l~ 426 (687)
...||.||+++.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 346999999775
No 240
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=40.66 E-value=29 Score=34.36 Aligned_cols=33 Identities=9% Similarity=0.250 Sum_probs=23.0
Q ss_pred CCCCCChHHHhcCC----hhhhhcccCccHHHHHHHH
Q psy11422 476 ANIVVTAVDLYKIN----FKNLLRLDRVSNKLANNIL 508 (687)
Q Consensus 476 ~g~I~~i~DL~~L~----~~~L~~l~gfG~Ksa~~Ll 508 (687)
.|-+.+...|..++ .+.|.+++|+|+++|+-++
T Consensus 120 ~g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~il 156 (228)
T 3s6i_A 120 SGLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLL 156 (228)
T ss_dssp HTSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred cCCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHH
Confidence 35555666666665 3568888888888887655
No 241
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=40.51 E-value=14 Score=37.86 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=17.7
Q ss_pred CCCCCCCcceee--cCceeEEecC
Q psy11422 417 ICPICNSKIIYI--ESNLIARCSG 438 (687)
Q Consensus 417 ~CP~C~~~l~~~--~~~~~~~C~n 438 (687)
-||.||+++.+. .+...+||++
T Consensus 247 pC~~CG~~I~~~~~~gR~t~~CP~ 270 (273)
T 3u6p_A 247 PCKRCGTPIEKTVVAGRGTHYCPR 270 (273)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTT
T ss_pred CCCCCCCeEEEEEECCCCeEECCC
Confidence 599999998753 4668899976
No 242
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=40.49 E-value=35 Score=33.92 Aligned_cols=33 Identities=9% Similarity=0.145 Sum_probs=24.2
Q ss_pred CCCCCChHHHhcCC----hhhhhcccCccHHHHHHHH
Q psy11422 476 ANIVVTAVDLYKIN----FKNLLRLDRVSNKLANNIL 508 (687)
Q Consensus 476 ~g~I~~i~DL~~L~----~~~L~~l~gfG~Ksa~~Ll 508 (687)
.|.+.++..|..+. .+.|.+++|+|+++|+-++
T Consensus 131 ~g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~il 167 (232)
T 4b21_A 131 NKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYS 167 (232)
T ss_dssp TTCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred hCCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHH
Confidence 46555666666665 3578999999999998665
No 243
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=40.40 E-value=13 Score=37.83 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=20.9
Q ss_pred CCCCCCCCCCcceeecCceeEEecC
Q psy11422 414 IPNICPICNSKIIYIESNLIARCSG 438 (687)
Q Consensus 414 ~P~~CP~C~~~l~~~~~~~~~~C~n 438 (687)
-..+||.||+++...+++...+|++
T Consensus 106 ~~~fC~~CG~~~~~~~~~~~~~C~~ 130 (269)
T 1vk6_A 106 SHKYCGYCGHEMYPSKTEWAMLCSH 130 (269)
T ss_dssp TTSBCTTTCCBEEECSSSSCEEESS
T ss_pred cCCccccCCCcCccCCCceeeeCCC
Confidence 3579999999998777788889965
No 244
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=40.40 E-value=76 Score=27.65 Aligned_cols=52 Identities=13% Similarity=0.249 Sum_probs=38.3
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHhccCCCCC--CChHHHHHHHHHHHHHHHH
Q psy11422 7 KKINFSKLSFRVTELKKELHRHNIAYYLYDNPI--ISDNKYDQLLFELKKIEEK 58 (687)
Q Consensus 7 ~~~~~~~~~~~i~~L~~~l~~~~~~YY~~~~p~--isD~~YD~L~~~L~~le~~ 58 (687)
+++|++++.+-+.++++++.+.+.-=-..+.|. -++.+-|.|..||..|+.+
T Consensus 1 ~~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e 54 (104)
T 3um3_B 1 DNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQE 54 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHH
Confidence 468888887777888888888776554455653 2566778888999888765
No 245
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=40.30 E-value=34 Score=36.21 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=22.1
Q ss_pred CCCCCCHHHHHHHHhhc--CChHHHHhc
Q psy11422 527 GIRHVGETTAKELANYF--KNLECMFKA 552 (687)
Q Consensus 527 GIp~vG~~~Ak~La~~f--~sld~l~~A 552 (687)
||||||+++|-+|.+.| ++++++...
T Consensus 229 gv~GiG~ktA~kli~~~~~~~l~~il~~ 256 (352)
T 3qe9_Y 229 SLRGIGLAKACKVLRLANNPDIVKVIKK 256 (352)
T ss_dssp CCTTCCHHHHHHHHHHCCCSCHHHHHTT
T ss_pred CCCCeeHHHHHHHHHHhCCCCHHHHHHH
Confidence 89999999999999998 688877654
No 246
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=40.17 E-value=9.6 Score=36.24 Aligned_cols=11 Identities=36% Similarity=1.259 Sum_probs=9.3
Q ss_pred CCCCCCCCCCc
Q psy11422 414 IPNICPICNSK 424 (687)
Q Consensus 414 ~P~~CP~C~~~ 424 (687)
.|+.||.||.+
T Consensus 152 ~p~~CP~Cg~~ 162 (170)
T 3pwf_A 152 APEYCPVCGAP 162 (170)
T ss_dssp CCSBCTTTCCB
T ss_pred CCCCCCCCCCC
Confidence 57899999975
No 247
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=39.86 E-value=14 Score=37.67 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=18.0
Q ss_pred CCCCCCCCcceee--cCceeEEecC
Q psy11422 416 NICPICNSKIIYI--ESNLIARCSG 438 (687)
Q Consensus 416 ~~CP~C~~~l~~~--~~~~~~~C~n 438 (687)
+-||.||+++.+. .+...+||++
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP~ 260 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCPT 260 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECTT
T ss_pred CCCCCCCCEeeEEEECCCceEECCC
Confidence 3599999998754 4568899976
No 248
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=39.62 E-value=11 Score=37.06 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=21.9
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhh
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~ 494 (687)
.=+++|+|+++.++|-..| |+|+.||..+....|.
T Consensus 186 v~~l~giG~~~~~~L~~~G-i~TigdL~~~~~~~L~ 220 (221)
T 1im4_A 186 IDEIPGIGSVLARRLNELG-IQKLRDILSKNYNELE 220 (221)
T ss_dssp GGGSTTCCHHHHHHHHHTT-CCBTTC----------
T ss_pred cccccCCCHHHHHHHHHcC-CCcHHHHHCCCHHHhh
Confidence 4478999999999998877 6999999988765553
No 249
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=39.61 E-value=33 Score=42.26 Aligned_cols=49 Identities=14% Similarity=0.083 Sum_probs=30.9
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHHhcCHHHHhcCCCCCHHHHHHHHHHHc
Q psy11422 527 GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576 (687)
Q Consensus 527 GIp~vG~~~Ak~La~~f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ff~ 576 (687)
-++|+|+..|+.|.++... ..=.-.+.++|..++|||+++-++...|+.
T Consensus 718 ~v~GlGp~kA~~Iv~~r~~-~~G~f~sr~~L~~v~~iG~k~fe~~agflr 766 (1219)
T 3psi_A 718 YISGFGKRKAIDFLQSLQR-LNEPLLARQQLITHNILHKTIFMNSAGFLY 766 (1219)
T ss_dssp GSTTCCHHHHHHHHHHHHH-HCSCCCCTTHHHHTTCSCHHHHHHHGGGEE
T ss_pred hCCCCCHHHHHHHHHHHHH-hCCCCCCHHHHhhCCCccHHHHHhccccEE
Confidence 5788888888777644300 000112456778888888888877777764
No 250
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=39.20 E-value=17 Score=31.28 Aligned_cols=23 Identities=17% Similarity=0.535 Sum_probs=12.9
Q ss_pred CCCCCCCCcceeec--CceeEEecC
Q psy11422 416 NICPICNSKIIYIE--SNLIARCSG 438 (687)
Q Consensus 416 ~~CP~C~~~l~~~~--~~~~~~C~n 438 (687)
..||-|+.+|++.. |-+++||.+
T Consensus 62 a~CPdC~q~LevLkACGAvdYFC~~ 86 (101)
T 2jne_A 62 ALCPDCHQPLQVLKACGAVDYFCQH 86 (101)
T ss_dssp EECTTTCSBCEEEEETTEEEEEETT
T ss_pred ccCcchhhHHHHHHHhcCcchhhcc
Confidence 35666666665432 346666655
No 251
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=38.51 E-value=29 Score=30.00 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=28.5
Q ss_pred hcCChHHHHhcCHHHHhcCCCCCHHHHHHHHHH
Q psy11422 542 YFKNLECMFKATEEQLLNIPKIGSTTVKAFIKF 574 (687)
Q Consensus 542 ~f~sld~l~~As~eeL~~I~GIG~~~A~sI~~f 574 (687)
.+.++..|...+.++|.+++++|++..+.|.+.
T Consensus 43 gI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~ 75 (98)
T 1coo_A 43 AIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDV 75 (98)
T ss_dssp TCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHHH
Confidence 467899999999999999999999888777653
No 252
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=38.43 E-value=15 Score=37.34 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=17.6
Q ss_pred CCCCCCCcceee--cCceeEEecC
Q psy11422 417 ICPICNSKIIYI--ESNLIARCSG 438 (687)
Q Consensus 417 ~CP~C~~~l~~~--~~~~~~~C~n 438 (687)
-||.||+++.+. .+...+||++
T Consensus 242 pC~~CG~~I~~~~~~gR~t~~CP~ 265 (268)
T 1k82_A 242 PCRVCGTPIVATKHAQRATFYCRQ 265 (268)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTT
T ss_pred CCCCCCCEeeEEEECCCceEECCC
Confidence 499999998754 4568889976
No 253
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=38.23 E-value=16 Score=37.36 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=17.6
Q ss_pred CCCCCCCcceee--cCceeEEecC
Q psy11422 417 ICPICNSKIIYI--ESNLIARCSG 438 (687)
Q Consensus 417 ~CP~C~~~l~~~--~~~~~~~C~n 438 (687)
-||.||+++.+. .+...+||++
T Consensus 244 pC~~CG~~I~~~~~~gR~t~~CP~ 267 (271)
T 2xzf_A 244 KCSRCGAEIQKIKVAGRGTHFCPV 267 (271)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTT
T ss_pred CCCCCCCEeeEEEECCCceEECCC
Confidence 499999998754 4568889976
No 254
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=37.89 E-value=16 Score=37.09 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=17.5
Q ss_pred CCCCCCCcceee--cCceeEEecC
Q psy11422 417 ICPICNSKIIYI--ESNLIARCSG 438 (687)
Q Consensus 417 ~CP~C~~~l~~~--~~~~~~~C~n 438 (687)
-||.||+++.+. .+...+||++
T Consensus 236 pC~~CG~~I~~~~~~gR~t~~CP~ 259 (262)
T 1k3x_A 236 PCERCGSIIEKTTLSSRPFYWCPG 259 (262)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTT
T ss_pred CCCCCCCEeEEEEECCCCeEECCC
Confidence 499999998754 4668889976
No 255
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=37.44 E-value=87 Score=33.79 Aligned_cols=52 Identities=23% Similarity=0.248 Sum_probs=34.9
Q ss_pred HHHHHhcCCEEccc-----cccc-ccEEEEcCC--CC-ccHHHHHHcCCeEEeHHHHHHHH
Q psy11422 627 IILIENLGGKVVNF-----ISKN-TNYLVKGQK--PG-KKLEKAIKLNIKILDEKNFVKIV 678 (687)
Q Consensus 627 ~~~i~~~Gg~v~~s-----Vsk~-t~~LV~G~~--~g-~Kl~kA~~lgI~Ii~E~~f~~~l 678 (687)
.+.+++.|..+... +-.. .|++|++.- +. .=+++|++.||||+++-+|+..+
T Consensus 49 ~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~ 109 (451)
T 3lk7_A 49 AQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYNNPMVKKALEKQIPVLTEVELAYLV 109 (451)
T ss_dssp HHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTTSHHHHHHHHTTCCEECHHHHHHHH
T ss_pred HHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCCChhHHHHHHCCCcEEeHHHHHHHh
Confidence 34455556555311 2133 788998763 33 56789999999999999998665
No 256
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=37.40 E-value=95 Score=34.03 Aligned_cols=50 Identities=10% Similarity=0.208 Sum_probs=35.6
Q ss_pred HHHHhcCCEEccc-----ccccccEEEEcCC--CC-ccHHHHHHcCCeEEeHHHHHHHH
Q psy11422 628 ILIENLGGKVVNF-----ISKNTNYLVKGQK--PG-KKLEKAIKLNIKILDEKNFVKIV 678 (687)
Q Consensus 628 ~~i~~~Gg~v~~s-----Vsk~t~~LV~G~~--~g-~Kl~kA~~lgI~Ii~E~~f~~~l 678 (687)
+.+++.|..+.-. + ...|++|++.- +. .-+.+|++.||+|+++-||+..+
T Consensus 61 ~~l~~~gi~~~~g~~~~~~-~~~d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~ 118 (494)
T 4hv4_A 61 QHLTALGAQIYFHHRPENV-LDASVVVVSTAISADNPEIVAAREARIPVIRRAEMLAEL 118 (494)
T ss_dssp HHHHHTTCEEESSCCGGGG-TTCSEEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHH
T ss_pred HHHHHCCCEEECCCCHHHc-CCCCEEEECCCCCCCCHHHHHHHHCCCCEEcHHHHHHHH
Confidence 3455566655421 2 24789998763 33 67899999999999999998655
No 257
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=35.29 E-value=15 Score=32.42 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=20.3
Q ss_pred CCCCCCCCCcceeecC----ceeEEecCCCCCCHHH
Q psy11422 415 PNICPICNSKIIYIES----NLIARCSGSWIECIAQ 446 (687)
Q Consensus 415 P~~CP~C~~~l~~~~~----~~~~~C~n~~~~C~~q 446 (687)
...||.||+.|...++ ...+.|.+ |+-+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~----C~y~ 35 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRN----CDYS 35 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSS----SCCE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCC----CCCe
Confidence 4689999999876543 23688976 8753
No 258
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=35.00 E-value=72 Score=32.83 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=36.6
Q ss_pred HHHHHhcCCEEcc-----ccc-ccccEEEEcCC--CC-ccHHHHHHcCCeEEeHHHHHHH
Q psy11422 627 IILIENLGGKVVN-----FIS-KNTNYLVKGQK--PG-KKLEKAIKLNIKILDEKNFVKI 677 (687)
Q Consensus 627 ~~~i~~~Gg~v~~-----sVs-k~t~~LV~G~~--~g-~Kl~kA~~lgI~Ii~E~~f~~~ 677 (687)
.+.+++.|..+.. .+. ...|++|++.- +. .=+++|++.||+|++|-||+..
T Consensus 43 ~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~ 102 (326)
T 3eag_A 43 STQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVVEAILNLGLPYISGPQWLSE 102 (326)
T ss_dssp HHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHH
T ss_pred HHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHHHHHHHcCCcEEeHHHHHHH
Confidence 3445667777652 233 46899999763 33 5688999999999999998753
No 259
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=34.89 E-value=5.2 Score=37.07 Aligned_cols=40 Identities=28% Similarity=0.374 Sum_probs=28.2
Q ss_pred EEECCEEEEEecCCCHHHHHhcCCCCCCEEEEEecCCccceeecccc
Q psy11422 356 VLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSIL 402 (687)
Q Consensus 356 V~l~G~tVsraTLhN~~~i~~~~i~iGd~V~v~raGdVIP~I~~vv~ 402 (687)
|..++++..- -|.+.+++++||+||.|.|. -+||+.-+|.
T Consensus 44 VrFdDs~~~~---V~~~~vk~LeLRiGD~VKVd----~vpK~~hiVv 83 (153)
T 2fhd_A 44 VQFDDATMST---VNSNQIKRFFLKKGDVVQST----RLGKIKHTVV 83 (153)
T ss_dssp EEETTSCEEE---EETTSEEESCCCTTCEEEET----TSTTCCEEEE
T ss_pred EEEcCCCCCc---cChhhceeeeeecCCEEEEC----CCCCccEEEE
Confidence 4455554442 25778999999999999998 5666665554
No 260
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=34.73 E-value=12 Score=34.89 Aligned_cols=13 Identities=46% Similarity=1.053 Sum_probs=10.4
Q ss_pred CCCCCCCCcceee
Q psy11422 416 NICPICNSKIIYI 428 (687)
Q Consensus 416 ~~CP~C~~~l~~~ 428 (687)
..||.||+++.+.
T Consensus 149 ~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 149 GVCPDCGSKVKLI 161 (165)
T ss_dssp GBCTTTCCBEEEC
T ss_pred CcCCCCCCcceeC
Confidence 3899999997654
No 261
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=34.73 E-value=38 Score=33.42 Aligned_cols=64 Identities=9% Similarity=-0.066 Sum_probs=40.1
Q ss_pred hHHHhcCChhhhhc---ccC--ccHHHHHHHHHHHHHc------ccCCHHHHHHH-c-CCCCCCHHHHHHHHhhcCC
Q psy11422 482 AVDLYKINFKNLLR---LDR--VSNKLANNILLAIQKS------KLTTFSRFIYA-L-GIRHVGETTAKELANYFKN 545 (687)
Q Consensus 482 i~DL~~L~~~~L~~---l~g--fG~Ksa~~Ll~~Ie~s------k~~~l~r~L~a-L-GIp~vG~~~Ak~La~~f~s 545 (687)
+.+|..++.++|.. --| |...+|.+|.+.-+.- .+.+....... + .+||||+++|..++..++.
T Consensus 76 p~~l~~~~~eeL~~~Ir~~G~Rf~~~KA~~I~~~a~~ig~l~~~~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~~g~ 152 (219)
T 3n0u_A 76 GKGFVHLPLEELAEKLREVGHRYPQKRAEFIVENRKLLGKLKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRNTGV 152 (219)
T ss_dssp TTHHHHCCHHHHHHHHHHTTCSSHHHHHHHHHHHGGGTTTHHHHHHSCHHHHHHHHHHHSTTCCHHHHHHHHHTTTC
T ss_pred HHHHHcCCHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 56677777766533 236 7788888887654421 12233333333 4 7899999999877755553
No 262
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=34.20 E-value=26 Score=30.38 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=47.0
Q ss_pred CCCccCCeEEEEEcCCCc----CCHHHHHHHHHhcCCEEcccccccc---cEEEEcCCCCccHHHHHHcCCeEEeHHHHH
Q psy11422 603 NKNYLKEKIFVFTGSLYA----FKRNEAIILIENLGGKVVNFISKNT---NYLVKGQKPGKKLEKAIKLNIKILDEKNFV 675 (687)
Q Consensus 603 ~~~~l~g~~vv~TG~l~~----~~R~e~~~~i~~~Gg~v~~sVsk~t---~~LV~G~~~g~Kl~kA~~lgI~Ii~E~~f~ 675 (687)
....|+|+.|.|--.-+. -.-++++.+|.++||.|..+..++. -|+|.--+.. ++|.++.....
T Consensus 8 ~~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpyN~t---------~LpTVtpTYI~ 78 (106)
T 2l42_A 8 SGPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSPYNHT---------NLPTVTPTYIK 78 (106)
T ss_dssp SSCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTTCCC---------SSSBCCTTHHH
T ss_pred cCccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCCCCC---------CCccccHHHHH
Confidence 445799999998653222 2569999999999999999998877 4555433321 56666666665
Q ss_pred HHHh
Q psy11422 676 KIVK 679 (687)
Q Consensus 676 ~~l~ 679 (687)
..++
T Consensus 79 aC~~ 82 (106)
T 2l42_A 79 ACCQ 82 (106)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 263
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=34.09 E-value=58 Score=31.55 Aligned_cols=62 Identities=18% Similarity=0.155 Sum_probs=36.1
Q ss_pred HHHhcCChhhhhcc-c--C--ccHHHHHHHHHHHHHccc-----------CCHHHHHHH-cCCCCCCHHHHHHHHhhcC
Q psy11422 483 VDLYKINFKNLLRL-D--R--VSNKLANNILLAIQKSKL-----------TTFSRFIYA-LGIRHVGETTAKELANYFK 544 (687)
Q Consensus 483 ~DL~~L~~~~L~~l-~--g--fG~Ksa~~Ll~~Ie~sk~-----------~~l~r~L~a-LGIp~vG~~~Ak~La~~f~ 544 (687)
.+|..++.++|.++ . | |-..+|.+|.+.-+...+ .+....... +.+||||+.+|..++..++
T Consensus 60 ~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~~~~~l~~~~~~~~~~~~~~L~~lpGIG~kTA~~il~~~~ 138 (207)
T 3fhg_A 60 QKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGRLKEEIKPLADEDQQLARERLLNIKGIGMQEASHFLRNVG 138 (207)
T ss_dssp GGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTTHHHHHHHHHHHCHHHHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhCCCHHHHHHHHHcCCCcCHHHHHHHHHHhC
Confidence 45666776665442 2 4 666777777765541111 111122222 4899999999998875433
No 264
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=33.69 E-value=47 Score=34.83 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=47.2
Q ss_pred CccH-HHHHHHHHHHHHccc------CCHHHHHHHc---CCCCCCHHHHHHHHhh-cCChHHHHhcCHHHHhcCCCCCHH
Q psy11422 498 RVSN-KLANNILLAIQKSKL------TTFSRFIYAL---GIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGST 566 (687)
Q Consensus 498 gfG~-Ksa~~Ll~~Ie~sk~------~~l~r~L~aL---GIp~vG~~~Ak~La~~-f~sld~l~~As~eeL~~I~GIG~~ 566 (687)
|+|+ |...|+...+.+... .....+|..+ .++|||+.++++|... +.++.+|..++.+.|.+. +|.+
T Consensus 143 GIa~nk~lAKlAs~~~Kp~g~~~i~~~~~~~~L~~lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~--fG~~ 220 (356)
T 4dez_A 143 GISDNKQRAKVATGFAKPAGIYVLTEANWMTVMGDRPPDALWGVGPKTTKKLAAMGITTVADLAVTDPSVLTTA--FGPS 220 (356)
T ss_dssp EEESSHHHHHHHHHHHCSSCEEECCTTTHHHHHTTSCGGGSTTCCHHHHHHHHHTTCCSHHHHHTSCHHHHHHH--HCHH
T ss_pred chhccHHHHHHHHHHhhhcCcccccchhhhhhhhcCcHHHHcCCchhHHHHHHHcCCCeecccccCCHHHHHHH--hCCh
Confidence 5554 555666666654221 1345666665 4689999888887643 557888888888877766 5555
Q ss_pred HHHHHHHH
Q psy11422 567 TVKAFIKF 574 (687)
Q Consensus 567 ~A~sI~~f 574 (687)
.+..+...
T Consensus 221 ~g~~l~~~ 228 (356)
T 4dez_A 221 TGLWLLLL 228 (356)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 265
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=33.32 E-value=43 Score=42.88 Aligned_cols=51 Identities=10% Similarity=0.193 Sum_probs=44.8
Q ss_pred cCCCCCCHHHHHHHHhh-cCChHHHHhcCHHHHhcCCCCCHHHHHHHHHHHc
Q psy11422 526 LGIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576 (687)
Q Consensus 526 LGIp~vG~~~Ak~La~~-f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ff~ 576 (687)
+.|||+|..+|++|.++ +.++.+|..++.+++..+-++.+.....|.+|++
T Consensus 1560 ~qip~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~~ll~~~~~~~~~i~~~~~ 1611 (1724)
T 4f92_B 1560 KQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCN 1611 (1724)
T ss_dssp GGSTTCCHHHHHHHHHHTCCSHHHHHSSCHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHHCCChHHHHHHHHHHH
Confidence 47899999999999865 7899999999999999999998888888777764
No 266
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=33.24 E-value=30 Score=35.73 Aligned_cols=46 Identities=13% Similarity=0.149 Sum_probs=29.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhc-CChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYK-INFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~-L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
.=.|+|+||||+.+|+++- .|++.||. +. .+. ..|..++|.+..+.
T Consensus 205 iPGVpGIG~KTA~kLL~~~--gsle~i~~~~~-----~~~--~~~~~~~L~~~~~~ 251 (290)
T 1exn_A 205 IRGVEGIGAKRGYNIIREF--GNVLDIIDQLP-----LPG--KQKYIQNLNASEEL 251 (290)
T ss_dssp BCCCTTCCHHHHHHHHHHH--CSHHHHHHHCS-----CSC--CCHHHHHHHTCHHH
T ss_pred CCCCCcCCHhHHHHHHHHc--CCHHHHHHHHH-----Hhc--cHHHHHHHHHhHHH
Confidence 3458999999999999863 37777776 32 220 22666666655543
No 267
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=33.22 E-value=13 Score=40.02 Aligned_cols=15 Identities=33% Similarity=0.352 Sum_probs=13.2
Q ss_pred CCCCEEEEEecCCcc
Q psy11422 380 QIGDTVVVHRSGNVI 394 (687)
Q Consensus 380 ~iGd~V~v~raGdVI 394 (687)
+|||||.|+.++|-.
T Consensus 254 GIGDTIRVSLT~dP~ 268 (406)
T 4g9p_A 254 GIGDTIRVSLTPSPK 268 (406)
T ss_dssp TCCSEEECCBCCCTT
T ss_pred cCchhEEeeccCCCC
Confidence 689999999999864
No 268
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=31.70 E-value=33 Score=24.01 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=15.2
Q ss_pred CCCCCCCc---ceeecCceeEEecC
Q psy11422 417 ICPICNSK---IIYIESNLIARCSG 438 (687)
Q Consensus 417 ~CP~C~~~---l~~~~~~~~~~C~n 438 (687)
.||.|++| |+.+.+...++|..
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~a 26 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMA 26 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEET
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhc
Confidence 49999996 55555556777843
No 269
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=31.43 E-value=26 Score=36.51 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.7
Q ss_pred CCCCCCHHHHHHHHhhcCChHHHH
Q psy11422 527 GIRHVGETTAKELANYFKNLECMF 550 (687)
Q Consensus 527 GIp~vG~~~Ak~La~~f~sld~l~ 550 (687)
||||||+++|-.|.+. ++++++.
T Consensus 229 GvpGiG~ktA~kli~~-gsle~i~ 251 (326)
T 1a76_A 229 GVKGIGFKRAYELVRS-GVAKDVL 251 (326)
T ss_dssp TTTTCCHHHHHHHHHH-TCHHHHH
T ss_pred CCCCcCHHHHHHHHHc-CCHHHHH
Confidence 7889999999999988 9998886
No 270
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=31.02 E-value=16 Score=32.43 Aligned_cols=14 Identities=29% Similarity=0.724 Sum_probs=10.5
Q ss_pred CCC-CCCCCCCccee
Q psy11422 414 IPN-ICPICNSKIIY 427 (687)
Q Consensus 414 ~P~-~CP~C~~~l~~ 427 (687)
.|. .||.||++..+
T Consensus 88 ~~~~~CP~Cgs~~~~ 102 (119)
T 2kdx_A 88 LDYGVCEKCHSKNVI 102 (119)
T ss_dssp STTCCCSSSSSCCCE
T ss_pred CCCCcCccccCCCcE
Confidence 466 89999997543
No 271
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=30.89 E-value=34 Score=29.01 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=23.5
Q ss_pred hhhhccc-----ccccccCCCCHHHHHHHHHCCCCC
Q psy11422 450 GLQHFSS-----RKAMNIIGLGKKMIEKLVNANIVV 480 (687)
Q Consensus 450 ~i~~F~s-----r~~l~I~GLG~k~i~~L~~~g~I~ 480 (687)
+..-|++ |+.-.++|+||....+|-++|+-+
T Consensus 6 Kh~~Fv~EPmgeK~V~evpGIG~~~~~~L~~~Gf~k 41 (89)
T 1ci4_A 6 KHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDK 41 (89)
T ss_dssp HHHHHHTSCCTTCCGGGSTTCCHHHHHHHHHTTCCS
T ss_pred HHHHHHhCCCCCCCcccCCCcCHHHHHHHHHcCccH
Confidence 4455655 566679999999999999988733
No 272
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=30.73 E-value=76 Score=35.13 Aligned_cols=51 Identities=14% Similarity=0.277 Sum_probs=37.4
Q ss_pred HHHHHhcCCEEcc-----cccccccEEEEcCC--CC-ccHHHHHHcCCeEEeHHHHHHH
Q psy11422 627 IILIENLGGKVVN-----FISKNTNYLVKGQK--PG-KKLEKAIKLNIKILDEKNFVKI 677 (687)
Q Consensus 627 ~~~i~~~Gg~v~~-----sVsk~t~~LV~G~~--~g-~Kl~kA~~lgI~Ii~E~~f~~~ 677 (687)
.+.+++.|..+.. .+....|++|++.- ++ .=+++|++.||||+++-||+..
T Consensus 58 ~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~p~l~~a~~~gi~v~~~~e~l~~ 116 (524)
T 3hn7_A 58 STQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDVIEYMLDTGLRYTSGPQFLSE 116 (524)
T ss_dssp HHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTSHHHHHHHHHTCCEEEHHHHHHH
T ss_pred HHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCCHHHHHHHHCCCcEEEHHHHHHH
Confidence 4456667777742 24346899999863 33 5688999999999999998754
No 273
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=30.69 E-value=24 Score=31.97 Aligned_cols=23 Identities=35% Similarity=0.871 Sum_probs=17.7
Q ss_pred CCCCCCCCCCcceeecCceeEEecC
Q psy11422 414 IPNICPICNSKIIYIESNLIARCSG 438 (687)
Q Consensus 414 ~P~~CP~C~~~l~~~~~~~~~~C~n 438 (687)
+| .||.|+++-+..+ +..+.|+-
T Consensus 27 lP-~CP~C~seytYeD-g~l~vCPe 49 (138)
T 2akl_A 27 LP-PCPQCNSEYTYED-GALLVCPE 49 (138)
T ss_dssp SC-CCTTTCCCCCEEC-SSSEEETT
T ss_pred CC-CCCCCCCcceEec-CCeEECCc
Confidence 45 5999999988765 46788864
No 274
>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A
Probab=30.05 E-value=61 Score=26.04 Aligned_cols=45 Identities=11% Similarity=0.293 Sum_probs=36.6
Q ss_pred HHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHHcc
Q psy11422 469 MIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSK 515 (687)
Q Consensus 469 ~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~sk 515 (687)
-.+.|..+|+ .++..+-.++.+||..+ |+..-.-++|+.+|+..+
T Consensus 19 Y~d~F~~~g~-~s~~~v~~lt~eDL~~~-GIt~ghqkkIl~siq~lr 63 (69)
T 2y9u_A 19 CLDYFTTQGL-TTIYQIEHYSMDDLASL-KIPEQFRHAIWKGILDHR 63 (69)
T ss_dssp GHHHHHTTTC-CBHHHHTTCCHHHHHHT-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CcHHHHHHcCHHHHHhc-CCChhhHHHHHHhHHHHH
Confidence 4566667776 78999999999999998 788877889999998643
No 275
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=29.31 E-value=30 Score=40.63 Aligned_cols=46 Identities=17% Similarity=0.269 Sum_probs=35.9
Q ss_pred CCCCCCHHHHHHHHhhcCChHHH-HhcCHHHHhcCCCCCHHHHHHHHHHH
Q psy11422 527 GIRHVGETTAKELANYFKNLECM-FKATEEQLLNIPKIGSTTVKAFIKFI 575 (687)
Q Consensus 527 GIp~vG~~~Ak~La~~f~sld~l-~~As~eeL~~I~GIG~~~A~sI~~ff 575 (687)
-+||+|+..|+.|.++- +.- .-.+.++|.+++|+|+++-+++..|+
T Consensus 512 ~v~GiG~~~A~~Iv~yR---~~~G~f~sr~~L~~V~giG~k~~ekl~~FL 558 (785)
T 3bzc_A 512 RISGLNSTLAQNIVAHR---DANGAFRTRDELKKVSRLGEKTFEQAAGFL 558 (785)
T ss_dssp TSTTCCHHHHHHHHHHH---HHHCCCSSGGGGGGSTTCCHHHHHHHGGGE
T ss_pred hcCCCCHHHHHHHHHHH---HhcCCCCCHHHHHhcCCCCHHHHHHhhheE
Confidence 58999999999888541 111 12356889999999999999999888
No 276
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=29.19 E-value=26 Score=31.27 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=21.1
Q ss_pred CCCCCCCCCcceeec----CceeEEecCCCCCCHHHH
Q psy11422 415 PNICPICNSKIIYIE----SNLIARCSGSWIECIAQR 447 (687)
Q Consensus 415 P~~CP~C~~~l~~~~----~~~~~~C~n~~~~C~~q~ 447 (687)
...||.||+-|...+ +...+.|.+ |+.+.
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~----C~y~~ 36 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRT----CSYVE 36 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSS----SSCEE
T ss_pred CCcccccCccCcccccCcCCCCEEECCc----CCCee
Confidence 568999999887553 246788966 87644
No 277
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=28.86 E-value=21 Score=31.87 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=17.4
Q ss_pred HhcCCCCCCEEEEEecCCccce
Q psy11422 375 YRKNIQIGDTVVVHRSGNVIPK 396 (687)
Q Consensus 375 ~~~~i~iGd~V~v~raGdVIP~ 396 (687)
.-.+|.+||.|.| ++||.||-
T Consensus 38 ~~~~l~~GDiv~v-~~G~~iPa 58 (124)
T 2kij_A 38 DVELVQRGDIIKV-VPGGKFPV 58 (124)
T ss_dssp ETTTCCTTCEEEC-CTTCBCSS
T ss_pred eHHHCCCCCEEEE-CCCCEEEe
Confidence 3458999999887 57999995
No 278
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=28.69 E-value=52 Score=32.29 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=20.9
Q ss_pred CCCccCCeEEEEEcCCCcC--------CHHHHHHHHHh
Q psy11422 603 NKNYLKEKIFVFTGSLYAF--------KRNEAIILIEN 632 (687)
Q Consensus 603 ~~~~l~g~~vv~TG~l~~~--------~R~e~~~~i~~ 632 (687)
.++.+.|..+|+-|.++.+ .=+++.+.+++
T Consensus 110 ~t~~y~G~YhVLgG~iSPldGigP~~L~i~~L~~Ri~~ 147 (212)
T 3vdp_A 110 KVKEYKGVYHVLHGVISPIEGVGPEDIRIKELLERVRD 147 (212)
T ss_dssp TTSCCCEEEEECSSCCBTTTTBCGGGTTHHHHHHHHHH
T ss_pred hhCccceEEEecCCccCccCCCCccccCHHHHHHHHhc
Confidence 4668999999999988643 33555555544
No 279
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=28.61 E-value=28 Score=33.34 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=18.8
Q ss_pred CCCCCCCCCC---cceeecCceeEEecC
Q psy11422 414 IPNICPICNS---KIIYIESNLIARCSG 438 (687)
Q Consensus 414 ~P~~CP~C~~---~l~~~~~~~~~~C~n 438 (687)
....||.||+ .++.+.....+.|.+
T Consensus 20 ~~~~CPECGs~~t~IV~D~erGE~VCsd 47 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVERFSEGDVVCAL 47 (197)
T ss_dssp CCCCCTTTCCSSCCEEEEGGGTEEEETT
T ss_pred cCeECcCCCCcCCeEEEeCCCCEEEEcC
Confidence 3458999998 477665667889977
No 280
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=28.39 E-value=20 Score=32.81 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=9.9
Q ss_pred CCCCCCCCCcce
Q psy11422 415 PNICPICNSKII 426 (687)
Q Consensus 415 P~~CP~C~~~l~ 426 (687)
|..||.||++-.
T Consensus 107 ~~~CP~Cgs~~~ 118 (139)
T 3a43_A 107 FLACPKCGSHDF 118 (139)
T ss_dssp GCSCSSSSCCCE
T ss_pred CCcCccccCCcc
Confidence 678999999744
No 281
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=28.06 E-value=37 Score=38.87 Aligned_cols=51 Identities=24% Similarity=0.402 Sum_probs=40.3
Q ss_pred HHHcCCCCCCHHHHHHHHhh-cCChHHHHhcCHHHHhcCCCCCHHHHHHHHHHHc
Q psy11422 523 IYALGIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576 (687)
Q Consensus 523 L~aLGIp~vG~~~Ak~La~~-f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ff~ 576 (687)
+.-+.|||+|..+|+.|.+. +.++.+|..++ +++.++- |++.+++|.+...
T Consensus 632 ~~L~qlp~v~~~~ar~l~~~g~~s~~~l~~~~-~~l~~ll--~~~~~~~i~~~~~ 683 (702)
T 2p6r_A 632 LELVRIRHIGRVRARKLYNAGIRNAEDIVRHR-EKVASLI--GRGIAERVVEGIS 683 (702)
T ss_dssp HHHHTSTTCCHHHHHHHHTTTCCSHHHHHHTH-HHHHHHH--CHHHHHHHHHHHH
T ss_pred HhhhcCCCCCHHHHHHHHHcCCCCHHHHHhhh-HHHHHHh--ChhHHHHHHHhcC
Confidence 33458999999999999865 88999999988 8888773 3777777776554
No 282
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=27.50 E-value=60 Score=26.59 Aligned_cols=47 Identities=23% Similarity=0.271 Sum_probs=36.5
Q ss_pred HHHHHHHHCCCCCChHHHhcCChhhhhcccCcc-HHHHHHHHHHHHHccc
Q psy11422 468 KMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS-NKLANNILLAIQKSKL 516 (687)
Q Consensus 468 k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG-~Ksa~~Ll~~Ie~sk~ 516 (687)
+-+..|.++|++ +...|..|+.++|..+ |+. ..--.+|+.+|+.-+.
T Consensus 29 ~Y~~~F~~~~~~-~~~~l~~lt~~dL~~l-GI~~~GhrkkIl~ai~~l~~ 76 (83)
T 2qkq_A 29 RYEESFAAAGFG-SFELVSQISAEDLLRI-GVTLAGHQKKILASVQHMKS 76 (83)
T ss_dssp GGHHHHHHTTCC-SHHHHTTCCHHHHHHH-TCCCHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHcCCC-cHHHHhhCCHHHHHHC-CCCCHHHHHHHHHHHHHHHH
Confidence 477888888974 8889999999999987 665 5567788898876553
No 283
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=27.41 E-value=88 Score=26.89 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=31.3
Q ss_pred cCcceeeeEEEEEEEEECCEEEEEecCCCHHHHHhcCCCCCCEEEEEe
Q psy11422 342 GRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHR 389 (687)
Q Consensus 342 GRTG~iTPvA~lePV~l~G~tVsraTLhN~~~i~~~~i~iGd~V~v~r 389 (687)
.|.|...+++.+.=. |++--=++|+.|........+.+|+.|.|.-
T Consensus 36 ~k~G~~~~~~~~~l~--D~TG~I~~t~w~~~~~~~~~l~~G~vv~i~g 81 (115)
T 2k50_A 36 TRKGREGKLANVIIA--DDTGELRAVFWTENIKLLKKFREGDVIRIKD 81 (115)
T ss_dssp CTTSSCCEEEEEEEE--ETTEEEEEEEETTGGGGGGTCCTTSEEEEEE
T ss_pred cCCCCEEEEEEEEEE--eCCCeEEEEEeCchhhhhhcCCCCCEEEEEe
Confidence 456765677666444 3444556999887644446899999999875
No 284
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=27.38 E-value=12 Score=31.16 Aligned_cols=13 Identities=38% Similarity=0.930 Sum_probs=10.3
Q ss_pred CCCCCCCCcceee
Q psy11422 416 NICPICNSKIIYI 428 (687)
Q Consensus 416 ~~CP~C~~~l~~~ 428 (687)
..||.||++|.+.
T Consensus 9 ~~~PlCG~~L~W~ 21 (95)
T 2k5c_A 9 AKCPICGSPLKWE 21 (95)
T ss_dssp EECSSSCCEECHH
T ss_pred ccCCcCCCccCHH
Confidence 4699999988653
No 285
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=27.14 E-value=26 Score=29.29 Aligned_cols=23 Identities=17% Similarity=0.488 Sum_probs=17.1
Q ss_pred CCCCCCCCcceee--cCceeEEecC
Q psy11422 416 NICPICNSKIIYI--ESNLIARCSG 438 (687)
Q Consensus 416 ~~CP~C~~~l~~~--~~~~~~~C~n 438 (687)
..||.||.+|..- =|.+++||.+
T Consensus 32 afCPeCgq~Le~lkACGA~~yFC~~ 56 (81)
T 2jrp_A 32 ALCPDCRQPLQVLKACGAVDYFCQN 56 (81)
T ss_dssp EECSSSCSCCCEEEETTEEEECCTT
T ss_pred ccCcchhhHHHHHHhcCCcCeeecc
Confidence 3899999998653 2557888876
No 286
>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D
Probab=27.11 E-value=78 Score=30.23 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=60.1
Q ss_pred EeecCCCceeeEEEEEEEEeecCcceeeeEEEEEEEEECCEEEEEecCCCHHHHHhcCCCCCCEEEEEecCCccceeecc
Q psy11422 321 LAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSS 400 (687)
Q Consensus 321 iA~Kf~~~~~~T~v~~I~~qvGRTG~iTPvA~lePV~l~G~tVsraTLhN~~~i~~~~i~iGd~V~v~raGdVIP~I~~v 400 (687)
|-||-.......+|.+|+..-+|| .|+|.+ ..-+|.. += .+.-.|+.+||.|.....- |
T Consensus 5 iDf~r~~~~i~~~V~~IeyDP~Rs---A~IAlv--~y~dg~~--~y------ilAp~gl~~Gd~I~~g~~a---~----- 63 (178)
T 1giy_D 5 IDFKRDKDGIPGRVATIEYDPNRS---ANIALI--NYADGEK--RY------IIAPKNLKVGMEIMSGPDA---D----- 63 (178)
T ss_pred eecccccCCccEEEEEEEECCCCC---eEEEEE--EecCCCE--EE------EECccCCccccEEEECCCC---c-----
Confidence 345554445578999999999998 566665 3345531 11 1344699999999864221 1
Q ss_pred ccCCCCCCCccc-cCCCCCCCCCCcceeecCceeEEecCCCCCCHHHHHhh
Q psy11422 401 ILSLRPNDSKIF-KIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAG 450 (687)
Q Consensus 401 v~~~r~~~~~~~-~~P~~CP~C~~~l~~~~~~~~~~C~n~~~~C~~q~~~~ 450 (687)
-.+++..|+ .+|.-+..|+-++..-.++...|.. . |-+|++++
T Consensus 64 ---i~~GN~lpL~~iP~Gt~I~NIE~~pG~gg~laRsA---G-t~a~ii~k 107 (178)
T 1giy_D 64 ---IKIGNALPLENIPVGTLVHNIELKPGRGGQLVRAA---G-TSAQVLGK 107 (178)
T ss_pred ---cccCCCcccccCCCCCEEEeEeccCCCCeEEEEeC---C-CeEEEEEe
Confidence 123444333 4777777777655543444444433 3 55666654
No 287
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=27.04 E-value=58 Score=33.93 Aligned_cols=77 Identities=9% Similarity=0.129 Sum_probs=48.9
Q ss_pred cCccH--HHHHHHHHHHHHcccCCHHHHHHHcCCCCCCHHHHHHHHhh-cCChHHHHhcCHHHHhcCCCCCHHHHHHHHH
Q psy11422 497 DRVSN--KLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIK 573 (687)
Q Consensus 497 ~gfG~--Ksa~~Ll~~Ie~sk~~~l~r~L~aLGIp~vG~~~Ak~La~~-f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ 573 (687)
.|+.. ..+-.|...|....-.. -..-+.+||+|+..++++.+. +.+++.|..++.+++..+-|+.+.....+.+
T Consensus 136 ~g~~~~~~~~l~L~q~i~q~~w~~---~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~ 212 (339)
T 2q0z_X 136 NGWLSPALAAMELAQMVTQAMWSK---DSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVAR 212 (339)
T ss_dssp TTBHHHHHHHHHHHHHHHHTCCTT---SCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCC---CCceecCCCCCHHHHHHHHhcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHH
Confidence 45543 44555555555432111 111257899999999988754 5689999999988877766666655555555
Q ss_pred HHc
Q psy11422 574 FIN 576 (687)
Q Consensus 574 ff~ 576 (687)
+.+
T Consensus 213 ~~~ 215 (339)
T 2q0z_X 213 FCN 215 (339)
T ss_dssp HHT
T ss_pred HHH
Confidence 543
No 288
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=26.87 E-value=26 Score=30.67 Aligned_cols=14 Identities=50% Similarity=1.089 Sum_probs=10.7
Q ss_pred cCCCCCCCCCCcce
Q psy11422 413 KIPNICPICNSKII 426 (687)
Q Consensus 413 ~~P~~CP~C~~~l~ 426 (687)
..|..||.|+|.-+
T Consensus 82 ~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 82 NIPSRCPKCKSEWI 95 (105)
T ss_dssp SCCSSCSSSCCCCB
T ss_pred CCCCCCcCCCCCcc
Confidence 46888999988654
No 289
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=26.35 E-value=1.4e+02 Score=29.99 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=59.4
Q ss_pred CCeEEEEEcCC-CcCCHHHHHHHHHhcCCEEccccc--ccccEEEEcCCCC-ccHHHHHHcCCe--EEeHHHHHHHHhc-
Q psy11422 608 KEKIFVFTGSL-YAFKRNEAIILIENLGGKVVNFIS--KNTNYLVKGQKPG-KKLEKAIKLNIK--ILDEKNFVKIVKG- 680 (687)
Q Consensus 608 ~g~~vv~TG~l-~~~~R~e~~~~i~~~Gg~v~~sVs--k~t~~LV~G~~~g-~Kl~kA~~lgI~--Ii~E~~f~~~l~~- 680 (687)
..+..++||-. ..++..+. +.+..+|-++...++ .++|+|++=...- .|.-+|...+=- ||+.+.+.+.|+.
T Consensus 21 ~~i~ai~TGc~~~~~~~~D~-~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~sLa~~P~~~il~p~FI~~~Lk~i 99 (256)
T 3t7k_A 21 YDLKAVCTGCFHDGFNEVDI-EILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLKSLSFEPLKFALKPEFIIDLLKQI 99 (256)
T ss_dssp CCEEEEESSSCSSCCCHHHH-HHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHHHTTSTTCCEEECTHHHHHHHHHH
T ss_pred eeEEEEecCCcccccCHHHH-HHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHHHhccCccceEeCHHHHHHHHHHh
Confidence 58999999988 66666664 578999999999986 4899999866543 788888888765 9999999888865
Q ss_pred ccC
Q psy11422 681 FST 683 (687)
Q Consensus 681 ~s~ 683 (687)
.++
T Consensus 100 h~~ 102 (256)
T 3t7k_A 100 HSK 102 (256)
T ss_dssp C--
T ss_pred hcC
Confidence 344
No 290
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=26.30 E-value=74 Score=34.11 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHh-hcCChHHHHhcCHHHHhcCCCCCHHHHHHHHHHH
Q psy11422 529 RHVGETTAKELAN-YFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575 (687)
Q Consensus 529 p~vG~~~Ak~La~-~f~sld~l~~As~eeL~~I~GIG~~~A~sI~~ff 575 (687)
-||++..+++|.+ .|.++..+..++..+|.++.|+++..+..|.+..
T Consensus 89 ~gi~~~~~~~L~~ag~~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a 136 (400)
T 3lda_A 89 NGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEA 136 (400)
T ss_dssp TTCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 4566777777764 4889999999999999999999998887776543
No 291
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=26.27 E-value=30 Score=32.93 Aligned_cols=53 Identities=8% Similarity=0.032 Sum_probs=32.9
Q ss_pred HHHHhcCCCCCCEEEEEecCCccceeeccccCCCCCCCccccCCCCCCCCCCcceeecCceeEEecC
Q psy11422 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438 (687)
Q Consensus 372 ~~i~~~~i~iGd~V~v~raGdVIP~I~~vv~~~r~~~~~~~~~P~~CP~C~~~l~~~~~~~~~~C~n 438 (687)
..+++-+|+-|+. .+.+ -.|..+-. . ..|-.| .||.|+.+++.. ++..++|..
T Consensus 12 ~~~~~e~lG~~~~-~fv~-----atI~~Ik~----d--~~~~Y~-ACp~CnKKV~~~-~~g~~~Cek 64 (172)
T 3u50_C 12 QQAQASEIGQKKE-FYVY-----GNLVSIQM----K--NKLYYY-RCTCQGKSVLKY-HGDSFFCES 64 (172)
T ss_dssp HHHHTCCTTCEEE-EEEE-----EEEECCCC----S--SCCEEE-ECTTSCCCEEEE-TTTEEEETT
T ss_pred HHHHHhhCCCCCC-EEEE-----EEEEEEcC----C--CcEEeh-hchhhCCEeeeC-CCCeEECCC
Confidence 4567778888877 3233 24444322 1 135555 499999998843 345789965
No 292
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=26.16 E-value=2.7e+02 Score=23.83 Aligned_cols=78 Identities=19% Similarity=0.148 Sum_probs=55.3
Q ss_pred ecCCCceeeEEEEEEEEeecCcceeeeEEEEEEEEECCEEEEEecCCCHHHHHhcCCCCCCEEEEEecCCccceeecc
Q psy11422 323 YKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSS 400 (687)
Q Consensus 323 ~Kf~~~~~~T~v~~I~~qvGRTG~iTPvA~lePV~l~G~tVsraTLhN~~~i~~~~i~iGd~V~v~raGdVIP~I~~v 400 (687)
.|-..+-.+-.|.+|.....++|--.-++++.==..++.+.=+.---=++.+.+.++..||.|.|.++-..+-++-+.
T Consensus 7 IkE~keVyEGEV~ei~~~~~~~~~~~~~~~itLkT~d~ek~l~lg~~i~e~L~kekV~~GDVI~Id~~sG~V~klGRs 84 (95)
T 2cqa_A 7 GKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKLGRS 84 (95)
T ss_dssp CCCCCSEEEEEEEEEEEECTTSSSSSCEEEEEEECSSSEEEEEECSHHHHHHHHTTCCTTSEEEEETTTTEEEEEECC
T ss_pred EEEEEEEEEEEEEEEEEeecCCCCcceEEEEEEEecCCcEEEeCCHHHHHHHHHcCceeCCEEEEEccCCEEEEEEEe
Confidence 344556678888888888888772212334333445667776666666788999999999999999987777666554
No 293
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=24.73 E-value=92 Score=25.30 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCc-cHHHHHHHHHHHHHccc
Q psy11422 464 GLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRV-SNKLANNILLAIQKSKL 516 (687)
Q Consensus 464 GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gf-G~Ksa~~Ll~~Ie~sk~ 516 (687)
||+. -+..|.++++ +-..|..|+.++|..+ |+ ...-..+|+.+|+.-+.
T Consensus 23 gl~~-Y~~~F~~~~i--dg~~Ll~Lt~~dL~~l-GI~~~ghr~kIl~aI~~L~~ 72 (81)
T 3bq7_A 23 SLCE-YKDIFTRHDI--RGSGLLHLERRDLKDL-GVTKVGHMKRILCGIKELSR 72 (81)
T ss_dssp TCGG-GHHHHHHTTC--CHHHHTTCCHHHHHHT-TCCCHHHHHHHHHHHHHHHC
T ss_pred CCHH-HHHHHHHcCC--CHHHHCcCCHHHHhHc-CCCCHHHHHHHHHHHHHHHH
Confidence 5655 6677777775 5556889999999987 65 34567889999987554
No 294
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=24.72 E-value=20 Score=32.75 Aligned_cols=29 Identities=24% Similarity=0.467 Sum_probs=20.5
Q ss_pred CCCCCCCCCCcceeecC----ceeEEecCCCCCCHHH
Q psy11422 414 IPNICPICNSKIIYIES----NLIARCSGSWIECIAQ 446 (687)
Q Consensus 414 ~P~~CP~C~~~l~~~~~----~~~~~C~n~~~~C~~q 446 (687)
-..+||.||+-|...++ ...+.|.+ |+-+
T Consensus 23 ~~~FCPeCgNmL~pked~~~~~l~~~Crt----CgY~ 55 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPREDKENNRLLFECRT----CSYV 55 (133)
T ss_dssp CCCBCTTTCCBCBCCBCTTTCCBCCBCSS----SCCB
T ss_pred CCeeCCCCCCEeeECccCCCceeEEECCC----CCCc
Confidence 35789999998875543 23578976 8763
No 295
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=24.63 E-value=1e+02 Score=25.74 Aligned_cols=46 Identities=24% Similarity=0.105 Sum_probs=34.2
Q ss_pred HHHHHHHHCCCCCChHHHhcCChhhhhcccCcc-HHHHHHHHHHHHHcc
Q psy11422 468 KMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS-NKLANNILLAIQKSK 515 (687)
Q Consensus 468 k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG-~Ksa~~Ll~~Ie~sk 515 (687)
+-...|.++|+ .+.+.|..++.+||..+ |+. ..--.+|+.+|+.-|
T Consensus 40 qY~~~F~~~g~-~~le~l~~lt~~DL~~l-GIt~~GHRkkIL~aI~~LK 86 (86)
T 2k4p_A 40 RYEEGLVHNGW-DDLEFLSDITEEDLEEA-GVQDPAHKRLLLDTLQLSK 86 (86)
T ss_dssp GGHHHHHTTTC-CCHHHHTTCCHHHHHHT-TCCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCC-ChHHHHHhCCHHHHHHC-CCCCHHHHHHHHHHHHHcC
Confidence 45666667675 78888889999999988 665 356678888887643
No 296
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=24.51 E-value=79 Score=25.40 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCcc-HHHHHHHHHHHHHccc
Q psy11422 464 GLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS-NKLANNILLAIQKSKL 516 (687)
Q Consensus 464 GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG-~Ksa~~Ll~~Ie~sk~ 516 (687)
||+ .-+..|.++++ +-..|..|+.++|..+ |+. ..-..+|+.+|+.-+.
T Consensus 18 gl~-~Y~~~F~~~~i--dg~~Ll~Lt~~dL~~l-GI~~~Ghr~kIl~aI~~l~~ 67 (76)
T 2f3n_A 18 HLG-EHRDRFEDHEI--EGAHLPALTKEDFVEL-GVTRVGHRENIERALRQLDG 67 (76)
T ss_dssp TCG-GGHHHHHHTTC--CGGGGGGCCHHHHHHT-TCCCHHHHHHHHHHHHTC--
T ss_pred CCH-HHHHHHHHcCC--CHHHHccCCHHHHHHc-CCCChhHHHHHHHHHHHHHH
Confidence 565 56777777774 3347888999999877 555 5667889999987543
No 297
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=24.24 E-value=70 Score=31.41 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=14.1
Q ss_pred hhhhcccCccHHHHHHHH
Q psy11422 491 KNLLRLDRVSNKLANNIL 508 (687)
Q Consensus 491 ~~L~~l~gfG~Ksa~~Ll 508 (687)
+.|.+++|+|+|+|+-++
T Consensus 146 ~~L~~l~GIG~~TA~~il 163 (225)
T 2yg9_A 146 AELVQLPGIGRWTAEMFL 163 (225)
T ss_dssp HHHHTSTTCCHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHH
Confidence 568888888888887555
No 298
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=24.02 E-value=92 Score=30.70 Aligned_cols=19 Identities=11% Similarity=0.239 Sum_probs=14.9
Q ss_pred hhhhcccCccHHHHHHHHH
Q psy11422 491 KNLLRLDRVSNKLANNILL 509 (687)
Q Consensus 491 ~~L~~l~gfG~Ksa~~Ll~ 509 (687)
+.|.+++|+|+++|+-++-
T Consensus 138 ~~L~~lpGIG~kTA~~ill 156 (233)
T 2h56_A 138 EKLTAIKGIGQWTAEMFMM 156 (233)
T ss_dssp HHHHTSTTCCHHHHHHHHH
T ss_pred HHHHhCCCcCHHHHHHHHH
Confidence 5688889999988876653
No 299
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=23.51 E-value=87 Score=25.48 Aligned_cols=46 Identities=22% Similarity=0.275 Sum_probs=35.1
Q ss_pred HHHHHHHHCCCCCChHHHhcCChhhhhcccCccH-HHHHHHHHHHHHcc
Q psy11422 468 KMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSN-KLANNILLAIQKSK 515 (687)
Q Consensus 468 k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~-Ksa~~Ll~~Ie~sk 515 (687)
+-...|.++|+ .+...|..|+.++|..+ |+.. .--.+|+.+|+.-+
T Consensus 25 ~Y~~~F~~~~~-~~~~~l~~lt~~dL~~l-GI~~~GhrkkIl~ai~~l~ 71 (82)
T 1b4f_A 25 QYKESFANAGF-TSFDVVSQMMMEDILRV-GVTLAGHQKKILNSIQVMR 71 (82)
T ss_dssp GGHHHHHHTTC-CSHHHHTTCCHHHHHHT-TCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHhCCHHHHHHc-CCCCHHHHHHHHHHHHHHH
Confidence 35677777774 78888999999999987 6653 56678888887644
No 300
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=23.44 E-value=27 Score=33.99 Aligned_cols=11 Identities=36% Similarity=0.664 Sum_probs=9.2
Q ss_pred CCCCCCCCCCc
Q psy11422 414 IPNICPICNSK 424 (687)
Q Consensus 414 ~P~~CP~C~~~ 424 (687)
.|..||.||.+
T Consensus 185 ~p~~CP~C~~~ 195 (202)
T 1yuz_A 185 DFEKCPICFRP 195 (202)
T ss_dssp CCSBCTTTCCB
T ss_pred CCCCCCCCCCC
Confidence 47899999974
No 301
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=23.39 E-value=31 Score=25.62 Aligned_cols=14 Identities=36% Similarity=1.179 Sum_probs=10.7
Q ss_pred ccc-CCC--CCCCCCCc
Q psy11422 411 IFK-IPN--ICPICNSK 424 (687)
Q Consensus 411 ~~~-~P~--~CP~C~~~ 424 (687)
+|. +|+ .||.||.+
T Consensus 23 ~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 23 PFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CGGGSCTTCBCTTTCCB
T ss_pred chhhCCCCCcCcCCCCc
Confidence 443 788 99999974
No 302
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=23.34 E-value=55 Score=33.22 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=18.6
Q ss_pred HHHHhcCCCCCHHHHHHHHHH
Q psy11422 554 EEQLLNIPKIGSTTVKAFIKF 574 (687)
Q Consensus 554 ~eeL~~I~GIG~~~A~sI~~f 574 (687)
.++|.+++|||+++|+.|.-|
T Consensus 206 ~~~L~~lpGIG~~TA~~ill~ 226 (282)
T 1mpg_A 206 MKTLQTFPGIGRWTANYFALR 226 (282)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHHH
Confidence 578999999999999998765
No 303
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=23.31 E-value=1.3e+02 Score=24.98 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=35.5
Q ss_pred HHHHHHHHHCCCCCChHHHhcCChhhhhcccCcc-HHHHHHHHHHHHHccc
Q psy11422 467 KKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS-NKLANNILLAIQKSKL 516 (687)
Q Consensus 467 ~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG-~Ksa~~Ll~~Ie~sk~ 516 (687)
++-...|.++|+ .+.++|..++.+||..+ |+- ..--.+|+.+|+.-+.
T Consensus 34 ~qY~~~F~~~g~-d~le~l~~lt~~DL~~L-GIt~~GHRkkIL~ai~~Lr~ 82 (86)
T 3kka_C 34 QQYTEHFMAAGY-TAIEKVVQMTNDDIKRI-GVRLPGHQKRIAYSLLGLKD 82 (86)
T ss_dssp GGGHHHHHHTTC-CSHHHHHTCCHHHHHHT-TCCCHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCC-ChHHHHHhCCHHHHHHC-CCCCHHHHHHHHHHHHHHHH
Confidence 345667777774 78889999999999988 444 3566789999987654
No 304
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=22.95 E-value=77 Score=31.44 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=14.8
Q ss_pred HHHhcCCCCCHHHHHHHHHHH
Q psy11422 555 EQLLNIPKIGSTTVKAFIKFI 575 (687)
Q Consensus 555 eeL~~I~GIG~~~A~sI~~ff 575 (687)
++|.++||||+++|+.+.-++
T Consensus 12 ~~l~~LPGIG~KSA~RlA~hL 32 (228)
T 1vdd_A 12 RELSRLPGIGPKSAQRLAFHL 32 (228)
T ss_dssp HHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHhHCCCCCHHHHHHHHHHH
Confidence 567777777777777766655
No 305
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=22.46 E-value=47 Score=31.07 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=15.3
Q ss_pred CCCCCCCCcceee-cC---ceeEEecC
Q psy11422 416 NICPICNSKIIYI-ES---NLIARCSG 438 (687)
Q Consensus 416 ~~CP~C~~~l~~~-~~---~~~~~C~n 438 (687)
.+||.||+++... .+ ....+|..
T Consensus 4 ~~C~~CG~~~~~~~~~G~~~~~~~~~~ 30 (189)
T 3cng_A 4 KFCSQCGGEVILRIPEGDTLPRYICPK 30 (189)
T ss_dssp CBCTTTCCBCEEECCTTCSSCEEEETT
T ss_pred ccCchhCCccccccccCCCCcceECCC
Confidence 5899999998643 22 24567754
No 306
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=22.41 E-value=1.1e+02 Score=26.27 Aligned_cols=41 Identities=20% Similarity=0.315 Sum_probs=34.1
Q ss_pred ccCCeEEEEEcCCCcCCHHHHHHHHHhcCCEEcccccccccEEEEcCC
Q psy11422 606 YLKEKIFVFTGSLYAFKRNEAIILIENLGGKVVNFISKNTNYLVKGQK 653 (687)
Q Consensus 606 ~l~g~~vv~TG~l~~~~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~ 653 (687)
.-.|.++.+-|. .++=+++++.|+++||.+. ..|=+++|..
T Consensus 47 eTe~lkitiEG~--~id~d~I~~~IE~~Gg~IH-----SIDEVvaG~~ 87 (97)
T 2raq_A 47 ETENIKVTIQGN--DLDFDEITRAIESYGGSIH-----SVDEVVAGRT 87 (97)
T ss_dssp SCEEEEEEEECS--SCCHHHHHHHHHHTTCEEE-----EEEEEEEESS
T ss_pred cccEEEEEEEec--CCCHHHHHHHHHHcCCeEE-----eeeeeeecce
Confidence 346899999998 3678999999999999884 4687888874
No 307
>2y9t_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle; NMR {Homo sapiens}
Probab=22.28 E-value=74 Score=26.46 Aligned_cols=45 Identities=11% Similarity=0.293 Sum_probs=36.2
Q ss_pred HHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHHcc
Q psy11422 469 MIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSK 515 (687)
Q Consensus 469 ~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~sk 515 (687)
-.+.|..+|+ .++..+-.|+.+||..+ |+..-.-++|+.+|+..+
T Consensus 21 Y~d~F~~~G~-~sl~~V~~lt~eDL~~m-GIt~gHqkkIl~siq~lr 65 (82)
T 2y9t_A 21 CLDYFTTQGL-TTIYQIEHYSMDDLASL-KIPEQFRHAIWKGILDHR 65 (82)
T ss_dssp GHHHHHTTTC-CBSGGGTTCCHHHHHHT-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CcHHHHHhcCHHHHHhc-CCChhhHHHHHhhHHHHH
Confidence 4556667776 78888889999999998 888877889999998643
No 308
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=22.01 E-value=82 Score=25.69 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=33.7
Q ss_pred HHHHHHHCCCCCChHHHhcCChhhhhcccCccH-HHHHHHHHHHHHcc
Q psy11422 469 MIEKLVNANIVVTAVDLYKINFKNLLRLDRVSN-KLANNILLAIQKSK 515 (687)
Q Consensus 469 ~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~-Ksa~~Ll~~Ie~sk 515 (687)
-+..|.++|+ .+...|..|+.+||..+ |+.. .--.+|+.+|+..+
T Consensus 22 Y~~~F~~~~~-d~~~~l~~lt~~DL~~l-GI~~~GhrkkIl~ai~~l~ 67 (81)
T 1ucv_A 22 YRDHFAAGGY-SSLGMVLRMNAQDVRAL-GITLMGHQKKILGSIQTMR 67 (81)
T ss_dssp GHHHHHHTTC-CBHHHHTTCCHHHHHHH-TCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-ChHHHHHHcCHHHHHhC-CCCChhHHHHHHHHHHHHH
Confidence 4667777775 67888999999999887 5553 56678888887643
No 309
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=21.97 E-value=69 Score=32.74 Aligned_cols=56 Identities=16% Similarity=0.291 Sum_probs=42.3
Q ss_pred CHHHHHHHHHhcCCEEcccccccccEEEEcCCCC------ccHHHHHHcCCeE-------EeHHHHHHHHhcccC
Q psy11422 622 KRNEAIILIENLGGKVVNFISKNTNYLVKGQKPG------KKLEKAIKLNIKI-------LDEKNFVKIVKGFST 683 (687)
Q Consensus 622 ~R~e~~~~i~~~Gg~v~~sVsk~t~~LV~G~~~g------~Kl~kA~~lgI~I-------i~E~~f~~~l~~~s~ 683 (687)
-|+++++.++.+ .+....-.+.+|+++. .|.+.|++.||-. ++|+++++.+.+...
T Consensus 13 i~~~~~~~v~~l------~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~lp~~~s~~ell~~I~~lN~ 81 (276)
T 3ngx_A 13 KAENLHGIIERS------GLEPSLKLIQIGDNEAASIYARAKIRRGKKIGIAVDLEKYDDISMKDLLKRIDDLAK 81 (276)
T ss_dssp HHHHHHHHHHHT------TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh------CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 367888888888 3556788888999753 6999999999922 258999998865433
No 310
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=21.79 E-value=53 Score=25.51 Aligned_cols=22 Identities=9% Similarity=-0.070 Sum_probs=17.7
Q ss_pred HHHHhcCCCCCCEEEEEecCCc
Q psy11422 372 SEIYRKNIQIGDTVVVHRSGNV 393 (687)
Q Consensus 372 ~~i~~~~i~iGd~V~v~raGdV 393 (687)
+--+++||.+||.|.|.-.|+-
T Consensus 29 eiR~~Lgi~~Gd~l~i~~~~~~ 50 (59)
T 1yfb_A 29 ELRRTLGIAEKDALEIYVDDEK 50 (59)
T ss_dssp HHHHHTTCCTTCEEEEEEETTE
T ss_pred HHHHHcCCCCCCEEEEEEECCE
Confidence 3346789999999999888773
No 311
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=21.79 E-value=44 Score=34.37 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=17.2
Q ss_pred CCCCCCCcceeec----CceeEEecC
Q psy11422 417 ICPICNSKIIYIE----SNLIARCSG 438 (687)
Q Consensus 417 ~CP~C~~~l~~~~----~~~~~~C~n 438 (687)
.||.||+++.+.. +-..+||+.
T Consensus 253 pC~~CGt~I~~~~~g~~gRsTyfCp~ 278 (287)
T 3w0f_A 253 NCDQCHSKITVCRFGENSRMTYFCPH 278 (287)
T ss_dssp BCTTTCCBCEEECSSTTCCCEEECTT
T ss_pred CCCCCCCEEEEEEecCCCCCEEECCC
Confidence 5999999988642 467889976
No 312
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=21.73 E-value=48 Score=31.56 Aligned_cols=67 Identities=12% Similarity=0.216 Sum_probs=41.4
Q ss_pred CCCCCCEEEE--------EecC-CccceeeccccCCCCCCCccccCCCCCCCCCCcceeecCceeEEecCCCCCCHHHHH
Q psy11422 378 NIQIGDTVVV--------HRSG-NVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRK 448 (687)
Q Consensus 378 ~i~iGd~V~v--------~raG-dVIP~I~~vv~~~r~~~~~~~~~P~~CP~C~~~l~~~~~~~~~~C~n~~~~C~~q~~ 448 (687)
-|+.||...| .|-+ +++=-|++.. |+..+. =-+-=.|+.|+..|. ++.+.|.+ +. .|+.
T Consensus 80 ~l~eGE~f~lP~gvpH~P~r~~~e~~~lviE~~---r~~~~~-d~~~wyc~~c~~~~~----e~~f~~~d-l~---~~l~ 147 (174)
T 1yfu_A 80 DLKEGDIFLLPPHVRHSPQRPEAGSACLVIERQ---RPAGML-DGFEWYCDACGHLVH----RVEVQLKS-IV---TDLP 147 (174)
T ss_dssp EECTTCEEEECTTCCEEEEBCCTTCEEEEEEEC---CCTTCC-EEEEEECTTTCCEEE----EEEECCSC-HH---HHSH
T ss_pred EECCCCEEEeCCCCCcCccccCCCCEEEEEEeC---CCCCCc-cceEEEcCCCCCEEE----EEEEEEec-hh---HhHH
Confidence 4678999888 5666 7666665544 333221 012338999998554 24678877 23 5777
Q ss_pred hhhhhccc
Q psy11422 449 AGLQHFSS 456 (687)
Q Consensus 449 ~~i~~F~s 456 (687)
.-|..|.+
T Consensus 148 ~~~~~f~~ 155 (174)
T 1yfu_A 148 PLFESFYA 155 (174)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 77776654
No 313
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=21.58 E-value=61 Score=27.21 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=20.1
Q ss_pred hhhhhcccCccHHHHHHHHHHHHH
Q psy11422 490 FKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 490 ~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
..++..|+|||+|.+++|-+.++.
T Consensus 57 ~~e~~~L~giG~ki~~~L~e~L~~ 80 (87)
T 2kp7_A 57 GKEAKILQHFGDRLCRMLDEKLKQ 80 (87)
T ss_dssp HHHHHTCTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccHHHHHHHHHHHHH
Confidence 467888999999999998887764
No 314
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=21.42 E-value=29 Score=36.44 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=18.8
Q ss_pred cCCCCCCCCCCc---ceeecCceeEEecC
Q psy11422 413 KIPNICPICNSK---IIYIESNLIARCSG 438 (687)
Q Consensus 413 ~~P~~CP~C~~~---l~~~~~~~~~~C~n 438 (687)
..+..||.||+. ++.+....++.|.+
T Consensus 19 ~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~ 47 (345)
T 3k7a_M 19 NIVLTCPECKVYPPKIVERFSEGDVVCAL 47 (345)
T ss_dssp CCCCCCSTTCCSCCCCCCCSSSCSCCCSS
T ss_pred cCCCcCcCCCCCCCceEEECCCCCEecCC
Confidence 345689999984 76655556788976
No 315
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=21.38 E-value=21 Score=27.93 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=17.8
Q ss_pred CCCCCCCCcceeecCceeEEecC
Q psy11422 416 NICPICNSKIIYIESNLIARCSG 438 (687)
Q Consensus 416 ~~CP~C~~~l~~~~~~~~~~C~n 438 (687)
+.||.|+.++++.+|=....|.+
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~ 29 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRN 29 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCS
T ss_pred eECcCCCCeeEeCCCCCcEEECC
Confidence 57999999999887655555655
No 316
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=21.08 E-value=1.2e+02 Score=24.57 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=36.5
Q ss_pred HHHHHHHHCCCCCChHHHhcCChhhhhcccCcc-HHHHHHHHHHHHHccc
Q psy11422 468 KMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS-NKLANNILLAIQKSKL 516 (687)
Q Consensus 468 k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG-~Ksa~~Ll~~Ie~sk~ 516 (687)
.-...|.++|+ .+++++-.++.++|..+ |+. ..--.+|+.+|+.-+.
T Consensus 26 ~Y~~~F~~~gy-~~~~~~~~lt~~DL~~l-GI~~~ghrkkil~ai~~L~~ 73 (78)
T 1v38_A 26 EYTSTLLLNGY-ETLDDLKDIKESHLIEL-NIADPEDRARLLSAAESLLS 73 (78)
T ss_dssp GGHHHHHHHTC-CBHHHHTTCCHHHHHHT-TTCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCC-CCHHHHhhcCHHHHHHc-CCCCHHHHHHHHHHHHHHHh
Confidence 46777888886 67888888999999998 555 5677788888876544
No 317
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.99 E-value=46 Score=27.89 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=17.8
Q ss_pred CCCCCCCCCCcceeecCceeEEecC
Q psy11422 414 IPNICPICNSKIIYIESNLIARCSG 438 (687)
Q Consensus 414 ~P~~CP~C~~~l~~~~~~~~~~C~n 438 (687)
.+-.||.||+.-+....-..|.|..
T Consensus 34 ~ky~CpfCGk~~vkR~a~GIW~C~k 58 (83)
T 3j21_i 34 QKHTCPVCGRKAVKRISTGIWQCQK 58 (83)
T ss_dssp SCBCCSSSCSSCEEEEETTEEEETT
T ss_pred cccCCCCCCCceeEecCcCeEEcCC
Confidence 3568999999766554456788854
No 318
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=20.83 E-value=87 Score=23.40 Aligned_cols=22 Identities=23% Similarity=0.113 Sum_probs=17.8
Q ss_pred HHHHhcCCCCCCEEEEEecCCc
Q psy11422 372 SEIYRKNIQIGDTVVVHRSGNV 393 (687)
Q Consensus 372 ~~i~~~~i~iGd~V~v~raGdV 393 (687)
+.-+.+||..||.|.+.-.++-
T Consensus 19 ~ir~~lgi~~Gd~v~i~~~~~~ 40 (53)
T 2l66_A 19 KVRQKFQIKEGDLVKVTFDESE 40 (53)
T ss_dssp HHHHHSCCCTTCEEEEEECSSS
T ss_pred HHHHHcCcCCCCEEEEEEECCE
Confidence 4457789999999999977763
No 319
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=20.81 E-value=57 Score=28.09 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=16.5
Q ss_pred CCCCCCCCCCcceeecCceeEEecC
Q psy11422 414 IPNICPICNSKIIYIESNLIARCSG 438 (687)
Q Consensus 414 ~P~~CP~C~~~l~~~~~~~~~~C~n 438 (687)
+-..||.|+.+|++..+ ...|..
T Consensus 31 M~~~CP~Cq~eL~~~g~--~~hC~~ 53 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNG--HARCRS 53 (101)
T ss_dssp CCCBCSSSCSBEEEETT--EEEETT
T ss_pred ccccCccCCCcceecCC--EEECcc
Confidence 44689999999998643 445654
No 320
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=20.65 E-value=38 Score=22.65 Aligned_cols=13 Identities=15% Similarity=0.503 Sum_probs=10.3
Q ss_pred CCCCCCCCCCcce
Q psy11422 414 IPNICPICNSKII 426 (687)
Q Consensus 414 ~P~~CP~C~~~l~ 426 (687)
+++.||.|+..+-
T Consensus 2 m~~~C~~C~k~Vy 14 (31)
T 1zfo_A 2 MNPNCARCGKIVY 14 (31)
T ss_dssp CCCBCSSSCSBCC
T ss_pred CCCcCCccCCEEe
Confidence 5678999998764
No 321
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=20.63 E-value=85 Score=30.74 Aligned_cols=60 Identities=15% Similarity=0.060 Sum_probs=33.8
Q ss_pred HHhcCChhhhhcc---cC--ccHHHHHHHHHHHH--Hc----cc-CCHHHHHHH-c-CCCCCCHHHHHHHHhhc
Q psy11422 484 DLYKINFKNLLRL---DR--VSNKLANNILLAIQ--KS----KL-TTFSRFIYA-L-GIRHVGETTAKELANYF 543 (687)
Q Consensus 484 DL~~L~~~~L~~l---~g--fG~Ksa~~Ll~~Ie--~s----k~-~~l~r~L~a-L-GIp~vG~~~Ak~La~~f 543 (687)
+|..++.++|.++ -| |-..+|.+|.+..+ .. .. .+....... + .+||||+++|..++...
T Consensus 72 ~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~~~~l~~~~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~ 145 (214)
T 3fhf_A 72 GFLTLPREELEEKLKNLGHRFYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNV 145 (214)
T ss_dssp HHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGGGCCHHHHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHhcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 4555665555332 36 77777777776544 10 11 122333333 4 68999999988776443
No 322
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.57 E-value=75 Score=27.10 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=38.3
Q ss_pred HHHHHHHHCCCCCChHHHhcCChhhhhcccCcc-HHHHHHHHHHHHHcccC
Q psy11422 468 KMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS-NKLANNILLAIQKSKLT 517 (687)
Q Consensus 468 k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG-~Ksa~~Ll~~Ie~sk~~ 517 (687)
.-...|.++|+ .+++++-.|+.+||..+ |+. ..--.+|+.+|+..+..
T Consensus 37 qY~~~F~~~g~-d~le~l~~lt~~DL~~l-GIt~~gHrkkIl~ai~~lr~~ 85 (97)
T 2dl0_A 37 MYAGTLSTAGF-STLSQVPSLSHTCLQEA-GITEERHIRKLLSAARLFKLP 85 (97)
T ss_dssp GGHHHHHHHTC-CSTTSGGGCCHHHHHHH-TCCCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHcCC-CcHHHHHhcCHHHHHHC-CCCCHHHHHHHHHHHHHHHcc
Confidence 46677778886 67888888999999988 665 66788999999887654
No 323
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=20.56 E-value=1.4e+02 Score=25.02 Aligned_cols=47 Identities=11% Similarity=0.267 Sum_probs=35.0
Q ss_pred HHHHHHHHHCCCCCChHHHhcCChhhhhcccCcc-HHHHHHHHHHHHHcc
Q psy11422 467 KKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS-NKLANNILLAIQKSK 515 (687)
Q Consensus 467 ~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG-~Ksa~~Ll~~Ie~sk 515 (687)
++-...|.++|+ .+...|..++.+||..+ |+- ..--.+|+.+|+.-+
T Consensus 38 ~qY~~~F~~~g~-d~~e~l~~lt~~DL~~l-GIt~~GHRkkIL~ai~~Lr 85 (90)
T 3h8m_A 38 ERYKDNFTAAGY-NSLESVARMTIEDVMSL-GITLVGHQKKIMSSIQTMR 85 (90)
T ss_dssp GGGHHHHHHTTC-CSHHHHHTCCHHHHHHT-TCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-ChHHHHhhCCHHHHHHC-CCCCHHHHHHHHHHHHHHH
Confidence 345667777774 78999999999999988 554 355678898887643
No 324
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=20.48 E-value=65 Score=34.91 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=42.2
Q ss_pred CccH-HHHHHHHHHHHHccc------CCHHHHHHHc---CCCCCCHHHHHHHHhh--cCChHHHHhcCHHHHhcCCCCCH
Q psy11422 498 RVSN-KLANNILLAIQKSKL------TTFSRFIYAL---GIRHVGETTAKELANY--FKNLECMFKATEEQLLNIPKIGS 565 (687)
Q Consensus 498 gfG~-Ksa~~Ll~~Ie~sk~------~~l~r~L~aL---GIp~vG~~~Ak~La~~--f~sld~l~~As~eeL~~I~GIG~ 565 (687)
|+|. |...||...+.+... .....||..+ .++|||.++++.+++. +.++.+|..++...|.+. +|+
T Consensus 218 GIa~nk~lAKlAs~~~Kp~g~~vv~~~~~~~~L~~lpv~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~~~--fG~ 295 (435)
T 4ecq_A 218 GISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSH--FGE 295 (435)
T ss_dssp EEESSHHHHHHHHHHSCSSCEEECCGGGHHHHHHTCBGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHHHH--HCH
T ss_pred EecCCHHHHHHHhccCCCCceEEEehhHHHHHHhhCCHHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHHHH--hCc
Confidence 4443 666666666533111 1345677776 4689998877665444 447778888887777655 444
Q ss_pred HHHH
Q psy11422 566 TTVK 569 (687)
Q Consensus 566 ~~A~ 569 (687)
+++.
T Consensus 296 ~~g~ 299 (435)
T 4ecq_A 296 KNGS 299 (435)
T ss_dssp HHHH
T ss_pred cHHH
Confidence 4443
No 325
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.46 E-value=1.7e+02 Score=24.41 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=40.9
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHhcCChhhhhcccCccHHHHHHHHHHHHH
Q psy11422 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (687)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~Ksa~~Ll~~Ie~ 513 (687)
+|..-|||++.|++|.++.. +=..|..|+++.|..-=|+..-.+.||+..|+-
T Consensus 26 ~Lr~igL~e~vv~~F~~e~I--DG~lL~~L~ee~L~edf~ls~Lq~kKi~~fI~G 78 (84)
T 2dkz_A 26 SLRFIGLSEDVISFFVTEKI--DGNLLVQLTEEILSEDFKLSKLQVKKIMQFING 78 (84)
T ss_dssp HGGGTCCCHHHHHHHHTTTC--CHHHHHHCCHHHHHHTSCCCHHHHHHHHHHHHC
T ss_pred HHHHcCCcHHHHHHHHHHcc--chHHHHhCCHHHHHhhcCCCHHHHHHHHHHHhc
Confidence 45556899999999988774 445677799999976446777788899998863
No 326
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=20.23 E-value=1.3e+02 Score=24.67 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=33.4
Q ss_pred HHHHHHHHHCCCCCChHHHhcCChhhhhcccCcc-HHHHHHHHHHHHH
Q psy11422 467 KKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS-NKLANNILLAIQK 513 (687)
Q Consensus 467 ~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG-~Ksa~~Ll~~Ie~ 513 (687)
++-...|.++|+ .+..+|..|+.+||..+ |+- ..--.+|+.+|+.
T Consensus 36 ~qY~~~F~~~g~-~s~e~l~~lt~~DL~~l-GIt~~GHRkkIL~aiq~ 81 (82)
T 3hil_A 36 KRYILHFHSAGL-DTMECVLELTAEDLTQM-GITLPGHQKRILCSIQG 81 (82)
T ss_dssp GGGHHHHHHTTC-CSGGGGTTCCHHHHHHT-TCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-ChHHHHhcCCHHHHHHC-CCCCHHHHHHHHHHHHh
Confidence 345667777774 78889999999999888 544 3556688888864
No 327
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=20.22 E-value=58 Score=29.55 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=21.6
Q ss_pred CCCCCCCCccee----------------ecCceeEEecCCCCCCHHHHHhhhhhccc
Q psy11422 416 NICPICNSKIIY----------------IESNLIARCSGSWIECIAQRKAGLQHFSS 456 (687)
Q Consensus 416 ~~CP~C~~~l~~----------------~~~~~~~~C~n~~~~C~~q~~~~i~~F~s 456 (687)
..||.||+.=.. ...+.+++|+|+ . |+ +.||..
T Consensus 2 ~~CP~Cg~~G~~V~~~Tvk~ll~~~~~~~~~~~y~~C~~~-~-C~------VvYf~~ 50 (130)
T 2hu9_A 2 MRCPECSTEGWRVLPLTVGAHVKEGLWSKIKGDFYFCSLE-S-CE------VVYFNE 50 (130)
T ss_dssp CBCTTTCCBCEEECHHHHHHHBCGGGGGGCCSCEEECCCT-T-CS------EEEECS
T ss_pred CcCCCCCCcCcCccHHHHHHHhhHHHhccCCCCEEeECCC-C-CC------EEEECC
Confidence 359999973110 123568899996 6 96 577754
No 328
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=20.15 E-value=74 Score=32.54 Aligned_cols=28 Identities=14% Similarity=0.206 Sum_probs=19.2
Q ss_pred ChHHHhcCC----hhhhhcccCccHHHHHHHH
Q psy11422 481 TAVDLYKIN----FKNLLRLDRVSNKLANNIL 508 (687)
Q Consensus 481 ~i~DL~~L~----~~~L~~l~gfG~Ksa~~Ll 508 (687)
++..|..+. .+.|.+++|+|+|+|+-++
T Consensus 196 ~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~il 227 (295)
T 2jhn_A 196 NLEELKEWGEEEAYEYLTSFKGIGRWTAELVL 227 (295)
T ss_dssp SGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHH
T ss_pred CHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHH
Confidence 444444444 3678899999999997655
No 329
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=20.11 E-value=77 Score=26.05 Aligned_cols=46 Identities=13% Similarity=0.175 Sum_probs=33.5
Q ss_pred HHHHHHHHCCCCCChHHHhcCChhhhhcccCccH-HHHHHHHHHHHHcc
Q psy11422 468 KMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSN-KLANNILLAIQKSK 515 (687)
Q Consensus 468 k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~gfG~-Ksa~~Ll~~Ie~sk 515 (687)
+-+..|.++|+ .+.+.|..|+.+||..+ |+.. .--.+|+.+|+.-+
T Consensus 30 qY~~~F~~~gi-d~~~~L~~lt~~DL~~l-GI~~~GhRkkIl~ai~~Lr 76 (82)
T 2kso_A 30 QYTEHFMAAGY-TAIEKVVQMTNDDIKRI-GVRLPGHQKRIAYSLLGLK 76 (82)
T ss_dssp THHHHHHHTTC-CSHHHHTTCCHHHHHHH-HCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-ChHHHHHhCCHHHHHHC-CCCChhHHHHHHHHHHHHH
Confidence 45777878875 77889999999999877 4432 45567888887644
No 330
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=20.10 E-value=77 Score=32.84 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=19.8
Q ss_pred ccCCCCHHHHHHHHHCCCCCChHHHh
Q psy11422 461 NIIGLGKKMIEKLVNANIVVTAVDLY 486 (687)
Q Consensus 461 ~I~GLG~k~i~~L~~~g~I~~i~DL~ 486 (687)
.|+|+|+||+.+|+.+ .+++.++
T Consensus 229 GvpGiG~ktA~kli~~---gsle~i~ 251 (326)
T 1a76_A 229 GVKGIGFKRAYELVRS---GVAKDVL 251 (326)
T ss_dssp TTTTCCHHHHHHHHHH---TCHHHHH
T ss_pred CCCCcCHHHHHHHHHc---CCHHHHH
Confidence 5899999999999998 4777777
No 331
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=20.03 E-value=2.5e+02 Score=29.90 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=27.0
Q ss_pred HHHHHcCCCCCCHHHHHHHHhhcCChHHHHhcC
Q psy11422 521 RFIYALGIRHVGETTAKELANYFKNLECMFKAT 553 (687)
Q Consensus 521 r~L~aLGIp~vG~~~Ak~La~~f~sld~l~~As 553 (687)
-||.-.-+|++|..+.++|.++|++.+++..+.
T Consensus 24 ~wL~L~~~~gvG~~~~~~Ll~~fgs~~~~~~a~ 56 (382)
T 3maj_A 24 DWMRLIRAENVGPRTFRSLINHFGSARAALERL 56 (382)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHHSSHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCHHHHHHcC
Confidence 455555899999999999999999998777653
Done!