BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11423
(655 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|399017276|ref|ZP_10719473.1| DNA ligase, NAD-dependent [Herbaspirillum sp. CF444]
gi|398104047|gb|EJL94204.1| DNA ligase, NAD-dependent [Herbaspirillum sp. CF444]
Length = 705
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/672 (50%), Positives = 450/672 (66%), Gaps = 33/672 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R LK L RHN AYY+ D+P I D +YD+L EL+ +E+++PEL T DS TQ VG
Sbjct: 18 RAAWLKAALDRHNHAYYVLDDPSIPDAEYDKLFHELQALEQQHPELATADSPTQRVGGTP 77
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL NGF DED+I F+KR+ + L ++ Y AELKFDG+A++LRYE
Sbjct: 78 LPQFEQVRHAIPMLSLGNGFDDEDIIAFDKRVKDGLSSLTDVAYAAELKFDGLAISLRYE 137
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GEN+T NI + IPL L+ PP++LEVR EVL+YK DF KLN+
Sbjct: 138 NGVLVGAATRGDGTTGENVTANIRTVRAIPLRLHGDNPPQVLEVRGEVLMYKNDFAKLNQ 197
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ GLK+F NPRNAAAG LRQL+ KI + L FFA+G+G L GM+MP SHS LL+WY
Sbjct: 198 RQRDAGLKEFANPRNAAAGSLRQLDSKITAQRTLRFFAYGIGVLEGMDMPPSHSALLDWY 257
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+GL +C E +V+ G L++FY I KR LPYEIDGVVYK++ L Q++LGF SRA
Sbjct: 258 ASLGLPVCKERAVVHGAEGLLKFYSGIGAKRGELPYEIDGVVYKVDRLDQQQQLGFVSRA 317
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PRFALA+K+ ++EALT ++ I +Q+GRTG ITPVA L PV + G+T+T ATLHNE E+ R
Sbjct: 318 PRFALAHKYPAQEALTVVQGIEVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEVRR 377
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+IQIGDTV+V R+G+VIP++ + + RP D++ F++P CP+C S II +E IARC
Sbjct: 378 KDIQIGDTVIVRRAGDVIPEVVAYVPESRPADAQPFEMPKECPVCGSPIIRLEEEAIARC 437
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG W++C AQRK GLQHF+SR+AM+I GLG ++IE+LV+ N++ TA DLY++ +L L
Sbjct: 438 SGGWVKCSAQRKGGLQHFASRRAMDIEGLGDQLIEQLVDKNVITTAADLYRLGLTSLAEL 497
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+++K A N+L A++KSK TT +RFIYALGIRHVGE TAKELA +F N++ + ATEEQ
Sbjct: 498 DRMADKSAQNVLDALEKSKSTTLARFIYALGIRHVGEATAKELARHFGNMDAVLAATEEQ 557
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPN----------------- 599
LL + IG ++ I F L+ L++QLR GI+W
Sbjct: 558 LLEVADIGPVVARSLISFFADGLNVELVNQLRAAGIHWTEGAGIDIPAKTLAGKIFVLTG 617
Query: 600 ---------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
GGKV +SK T+Y+V G + G KL KA +L I ILDE+ V
Sbjct: 618 TLPTMSRDDAAQMIEAAGGKVSGSVSKKTSYVVAGAEAGSKLAKAEELGIAILDEEALVA 677
Query: 645 IVK-GFSTETKI 655
+V+ G +T +
Sbjct: 678 LVQNGPQEDTDV 689
>gi|152981161|ref|YP_001353755.1| DNA ligase [Janthinobacterium sp. Marseille]
gi|166215814|sp|A6SZQ8.1|DNLJ_JANMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|151281238|gb|ABR89648.1| DNA ligase (Polydeoxyribonucleotide synthase) [Janthinobacterium
sp. Marseille]
Length = 692
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/671 (49%), Positives = 454/671 (67%), Gaps = 32/671 (4%)
Query: 7 KKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKD 66
++ + S + R L+ EL+RHN +Y++ DNP I D +YD+L EL+ +E +PELL D
Sbjct: 19 EEPDASNPAARAAWLRDELNRHNYSYHVLDNPSIPDAEYDKLFRELQALETSHPELLVFD 78
Query: 67 SLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKF 126
S TQ VG + V H+ M+SL NGF DED+I F+KR+++ L T+ IEY ELKF
Sbjct: 79 SPTQRVGALALSAFPQVTHSVPMLSLGNGFEDEDIIAFDKRVSDGLNSTE-IEYATELKF 137
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+A+NLRYE G L +A+TRGDG GEN+TTNI + IPL L+ PP++L+VR EV++
Sbjct: 138 DGLAINLRYEDGILVEAATRGDGATGENVTTNIRTVRAIPLRLHTATPPKVLDVRGEVMM 197
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
YK D KLN + G K+F NPRNAAAG LRQL+ +I + L FFA+G+G L G MP
Sbjct: 198 YKADLAKLNARQRDAGGKEFANPRNAAAGSLRQLDSRITAQRTLRFFAYGIGMLEGAEMP 257
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
SHS LL+WY ++GL +C E +V+ G L+EFYK + KR LPYEIDGVVYK+N +
Sbjct: 258 PSHSALLDWYAELGLPVCAERAVVKGAAGLLEFYKAVGQKRPTLPYEIDGVVYKVNRVEQ 317
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q++LGF SRAPR+A+A+KF ++EALT ++ I +Q+GRTG ITPVA L PVL+ G+T+T A
Sbjct: 318 QQQLGFVSRAPRYAIAHKFPAEEALTTVQGIEVQVGRTGAITPVARLAPVLVGGVTVTNA 377
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKII 426
TLHNE E+ RK+IQIGDTV+V R+G+VIP++ + + RP D++ F +P CP+CNS I+
Sbjct: 378 TLHNEDEVRRKDIQIGDTVIVRRAGDVIPEVVAYVPEKRPVDAQPFVMPTNCPVCNSPIV 437
Query: 427 YIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY 486
+E IARCSG W++C AQRK GL HF SR+AM++ GLG +++E+LV+ +I+ TA DLY
Sbjct: 438 KLEDEAIARCSGGWVKCAAQRKGGLLHFVSRRAMDVEGLGDQLVEQLVDKHIITTAADLY 497
Query: 487 KINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546
K+ F+ L LDR+++K A N++ A++KSK TT +RFIYALGIRHVGE TAKELA +F NL
Sbjct: 498 KLGFRALAELDRMADKSAQNVMAALEKSKSTTLARFIYALGIRHVGEATAKELARHFGNL 557
Query: 547 ECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL-----NNP--- 598
E + +A+EEQLL + IG ++ F++ PL+ LI QL+ G+ W N P
Sbjct: 558 EALLQASEEQLLEVADIGPVVAQSIRSFLSDPLNMELIEQLQAAGVRWPEHVVENKPKPF 617
Query: 599 -----------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIK 635
GGKV +SK T+Y+V G G KL KA +L I
Sbjct: 618 AGKTFVLTGTLPTLSRDQAAEKIEAAGGKVAGSVSKKTSYVVAGADAGSKLAKAEELGIT 677
Query: 636 ILDEKNFVKIV 646
ILDE ++++
Sbjct: 678 ILDESALLQLL 688
>gi|134094553|ref|YP_001099628.1| DNA ligase [Herminiimonas arsenicoxydans]
gi|166215813|sp|A4G4R4.1|DNLJ_HERAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|133738456|emb|CAL61501.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Herminiimonas
arsenicoxydans]
Length = 696
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/668 (49%), Positives = 447/668 (66%), Gaps = 31/668 (4%)
Query: 10 NFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLT 69
+ S S R L+ EL+RHN AYY+ DNPI+ D +YDQL EL+ +E +PELL DS T
Sbjct: 23 DASDPSARAAWLRSELNRHNYAYYVLDNPIVPDAEYDQLFRELQALEASHPELLVFDSPT 82
Query: 70 QHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGI 129
Q VG + V H+ M+SL NGF DEDV+ F+KR++ L + +EY ELKFDG+
Sbjct: 83 QRVGALALTAFPPVTHSVPMLSLGNGFEDEDVLAFDKRVSEGLNSREEVEYATELKFDGL 142
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
A+NLRYE G L QA+TRGDG GEN+T NI + IPL L+ PP++L+VR EV++YK
Sbjct: 143 AINLRYEDGVLVQAATRGDGATGENVTANIRTVRAIPLRLHTNNPPKVLDVRGEVMMYKA 202
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
D KLN + G K+F NPRNAAAG LRQL+ +I + L FF++G+G L G +MP+SH
Sbjct: 203 DLAKLNARQRDAGAKEFANPRNAAAGSLRQLDSRITAQRSLRFFSYGIGLLEGADMPASH 262
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
S LL+WY ++G+ +C E +V+ GV L+EFYK + KR LPYEIDGVVYK+N + Q +
Sbjct: 263 SALLDWYAELGIPVCSERAVVRGVQGLLEFYKATSEKRPQLPYEIDGVVYKVNRVDQQLQ 322
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF SRAPRFA+A+KF ++EALT ++ I +Q+GRTG ITPVA L PVL+ G+T+T ATLH
Sbjct: 323 LGFVSRAPRFAIAHKFPAEEALTTVQDIEVQVGRTGAITPVARLAPVLVGGVTVTNATLH 382
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
NE E+ RK+IQIGDTV+V R+G+VIP++ + + RP ++ F +P+ CP+C S I+ +E
Sbjct: 383 NEDEVRRKDIQIGDTVIVRRAGDVIPEVVAFVPERRPASARPFIMPSSCPVCGSPIVRLE 442
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
IARCSG W++C AQRK GL HF SR+AM++ GLG +++E+LV+ +I+ TA DLYK+
Sbjct: 443 DEAIARCSGGWVKCAAQRKGGLLHFVSRRAMDVEGLGDQLVEQLVDKHIITTAADLYKLG 502
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
F+ L LDR+++K A N+L A++KSK TT +RFIYALGIRHVGE TAKELA +F NL+ +
Sbjct: 503 FRALAELDRMADKSAQNVLDALEKSKRTTLARFIYALGIRHVGEATAKELARHFGNLDAL 562
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL-----NNP------ 598
+A+ EQLL + IG + F ++ LI QLR G+ W N P
Sbjct: 563 LQASPEQLLEVADIGPVVAASITAFFTDAMNIELIEQLRAAGVTWPEHVVENRPRPLAGK 622
Query: 599 --------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
GGKV +SK T+Y+V G + G KL KA +L + ILD
Sbjct: 623 TFVLTGTLPTLSRDAAAEKIEAAGGKVAGSVSKKTSYVVAGAEAGSKLAKAEELGVTILD 682
Query: 639 EKNFVKIV 646
E ++++
Sbjct: 683 ETGLLQLL 690
>gi|340786485|ref|YP_004751950.1| DNA ligase [Collimonas fungivorans Ter331]
gi|340551752|gb|AEK61127.1| DNA ligase [Collimonas fungivorans Ter331]
Length = 694
Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/665 (49%), Positives = 450/665 (67%), Gaps = 34/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L EL+RHN +YY+ DNP I D +YDQL EL+ +E+ +PEL T DS TQ VG
Sbjct: 23 RAAWLAAELNRHNHSYYVLDNPSIPDAEYDQLFRELQALEQAHPELNTPDSPTQRVGAAP 82
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--KLTKNIEYIAELKFDGIAVNLR 134
+ V H+ M+SL NGF D D+I F++R+ + L + +IEY AELKFDG+A+NLR
Sbjct: 83 LPLFEQVTHSIPMLSLGNGFEDNDIIEFDRRVRDGLDTQADSDIEYAAELKFDGLAINLR 142
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194
YE G L QA+TRGDG GEN+T+NI + IPL L+ ++PP++L+VR EVL++K DF KL
Sbjct: 143 YEDGVLVQAATRGDGTTGENVTSNIRTVRAIPLRLHTEHPPKVLDVRGEVLMFKDDFAKL 202
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N + +K+F NPRNAAAG LRQL+ +I + L FFA+G+G L G +MP SHS LL+
Sbjct: 203 NARQREAEMKEFANPRNAAAGSLRQLDSRITAQRTLRFFAYGIGMLEGADMPPSHSALLD 262
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
WY ++GL +C E V+ G + L++F++ I KR LPYEIDGVVYK+N L Q+ LGF S
Sbjct: 263 WYSQLGLPVCKERGVVKGASGLLDFFRDIGGKRPQLPYEIDGVVYKVNRLLQQQTLGFVS 322
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPRFALA+KF ++EA T++ I +QIGRTG +TPVA L PV + G+T+T ATLHNE E+
Sbjct: 323 RAPRFALAHKFPAEEATTQVLGIEVQIGRTGAVTPVARLAPVFVGGVTVTNATLHNEDEV 382
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
RK+I IGDTV+V R+G+VIP++ S + LRP D++ F +P+ CPIC S I+ +E IA
Sbjct: 383 RRKDIHIGDTVIVRRAGDVIPEVVSFVPELRPADAQSFVMPSECPICGSAIVKLEDEAIA 442
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RCSG W++C AQRK GLQHF+SR+AM+I GLG ++IE+LV+ +++ TA DLYK+ L
Sbjct: 443 RCSGGWVKCAAQRKGGLQHFASRRAMDIEGLGDQLIEQLVDRDLIHTAADLYKLGLVKLA 502
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
LDR+++K A N++ A++KSK TT RFIYALGIRHVGE TAKELA +F N++ + +A+E
Sbjct: 503 ALDRMADKSAQNVMSALEKSKSTTLGRFIYALGIRHVGEATAKELAAHFGNIDGLLQASE 562
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNN----------------- 597
EQLL + IG ++ + F PL+R L+ QLR GI+W N
Sbjct: 563 EQLLEVADIGPVVARSLLAFFADPLNRELVEQLRAAGIHWPENLPAAGGSKFLLGKTFVL 622
Query: 598 ----PN-----------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
P GGKV +SK T+Y+V G + G KL KA +LNI ILDE
Sbjct: 623 TGSLPTLTRDAAAAMIEAAGGKVTGSVSKKTSYVVAGAEAGSKLTKAEELNIPILDEDGL 682
Query: 643 VKIVK 647
+++
Sbjct: 683 RTLLE 687
>gi|300311482|ref|YP_003775574.1| NAD-dependent DNA ligase [Herbaspirillum seropedicae SmR1]
gi|300074267|gb|ADJ63666.1| NAD-dependent DNA ligase (contains BRCT domain type II) protein
[Herbaspirillum seropedicae SmR1]
Length = 688
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/658 (49%), Positives = 440/658 (66%), Gaps = 32/658 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L+ +L+RHN +YY+ D P I D +YD+L EL+ +E +PELLT DS TQ VG
Sbjct: 21 RAFALRADLNRHNYSYYVLDQPSIPDAEYDRLFQELQALETAHPELLTPDSPTQRVGAGP 80
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL NGFSD+D+ F+KR+ + L+ + + Y ELKFDG+A++LRYE
Sbjct: 81 LPQFEPVRHDIPMLSLGNGFSDDDIEAFDKRVRDGLETLQEVRYATELKFDGLAISLRYE 140
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GEN+T NI + IPL L+ + P+LL+VR EVL+YK DF +LN+
Sbjct: 141 NGVLVQAATRGDGTTGENVTANIRTVRAIPLRLHGEAIPQLLDVRGEVLMYKDDFARLNQ 200
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ G K+F NPRNAAAG LRQL+ +I + L FFA+G+G L G +MPSSHS LL+WY
Sbjct: 201 RQRDAGQKEFANPRNAAAGSLRQLDSRITAQRTLRFFAYGIGVLEGADMPSSHSALLDWY 260
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
Q++GL +C E +V++G L+EF++ I KR +LPYEIDGVVYK++ L QK+LGF SRA
Sbjct: 261 QQLGLPVCKERAVVTGATGLLEFFRGIGAKRESLPYEIDGVVYKVDRLDQQKQLGFVSRA 320
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PRFALA+KF ++EALT ++ I +Q+GRTG ITPVA L PV + G+T+T ATLHNE E+ R
Sbjct: 321 PRFALAHKFPAQEALTVVQDIEVQVGRTGAITPVARLNPVFVGGVTVTNATLHNEDEVRR 380
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+IQIGDTV+V R+G+VIP++ + + RP D++ F +P CP+C S I+ E +ARC
Sbjct: 381 KDIQIGDTVIVRRAGDVIPEVVAYVPEKRPADARAFVMPAACPVCGSPIVRAEDEAVARC 440
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG W++C AQRK GLQHF+SR+AM+I GLG++++E+LV+ +V T DLY++ L L
Sbjct: 441 SGGWLKCSAQRKGGLQHFASRRAMDIEGLGEQLVEQLVDRKVVNTPADLYRLGLSALAEL 500
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR++ K A N+L A+QKSK TT +RFIYALGIRHVGE TAKELA +F L+ + A+E Q
Sbjct: 501 DRMAEKSAQNVLDALQKSKSTTLARFIYALGIRHVGEATAKELARHFGGLDKILAASEAQ 560
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNN------------------- 597
LL + +G + F + L+ L+ QLR VG++W +
Sbjct: 561 LLEVADVGPVVATSIRSFFDDALNVELVEQLRAVGVHWPESAGVEAAAKHLAGKTFVLTG 620
Query: 598 --PN-----------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
PN GGKV +SK T Y+V G + G KL KA +L I ILDE
Sbjct: 621 TLPNLSRDEASQLIEAAGGKVTGSVSKKTTYVVAGAEAGSKLAKAEELGIAILDEDGL 678
>gi|409405979|ref|ZP_11254441.1| NAD-dependent DNA ligase [Herbaspirillum sp. GW103]
gi|386434528|gb|EIJ47353.1| NAD-dependent DNA ligase [Herbaspirillum sp. GW103]
Length = 686
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/664 (48%), Positives = 442/664 (66%), Gaps = 32/664 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L+ EL+RHN +YY+ D P I D +YD+L EL+ +E +PELLT DS TQ VG
Sbjct: 17 RARTLRDELNRHNHSYYVLDQPSIPDAEYDRLFQELQALETAHPELLTPDSPTQRVGAGP 76
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL NGF+DED+ F+KR+ + L+ + + Y ELKFDG+A++LRYE
Sbjct: 77 LPQFEPVRHDIPMLSLGNGFADEDIEAFDKRVRDGLETLQEVRYATELKFDGLAISLRYE 136
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GEN+T NI + IPL L+ P++++VR EVL+YK+DF +LN+
Sbjct: 137 NGVLVQAATRGDGTTGENVTANIRTVRAIPLRLHGDNLPQVIDVRGEVLMYKEDFARLNQ 196
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ G K+F NPRNAAAG LRQL+ +I + L FFA+G+G L G MP SHS LL+WY
Sbjct: 197 RQRDAGQKEFANPRNAAAGSLRQLDSRITAQRTLRFFAYGIGVLEGAEMPPSHSALLDWY 256
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
Q++GL +C E +V+SG L++F++ I KR +LPYEIDGVVYK++ L QK LGF SRA
Sbjct: 257 QELGLPVCKERAVVSGAAGLLDFFRSIGAKRESLPYEIDGVVYKVDRLDQQKHLGFVSRA 316
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PRFALA+KF ++EALT ++ I +Q+GRTG ITPVA L PV + G+T+T ATLHNE E+ R
Sbjct: 317 PRFALAHKFPAQEALTVVQDIEVQVGRTGAITPVARLNPVFVGGVTVTNATLHNEDEVRR 376
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGDTV+V R+G+VIP++ + + RP D++ F +P CP+C S I+ E +ARC
Sbjct: 377 KDIRIGDTVIVRRAGDVIPEVVAFVPEKRPEDARAFVMPVACPVCGSPIVRAEEEAVARC 436
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG W++C AQRK GLQHF+SR+AM+I GLG++++E+LV+ +V T DLY++ L L
Sbjct: 437 SGGWLKCSAQRKGGLQHFASRRAMDIEGLGEQLVEQLVDRQVVNTPADLYRLGLSALAEL 496
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR++ K A N+L A+QKSK TT +RFIYALGIRHVGE TAKELA +F ++ + A+EEQ
Sbjct: 497 DRMAEKSAQNVLDALQKSKTTTLARFIYALGIRHVGEATAKELARHFGGIDKLLAASEEQ 556
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNN------------------- 597
LL + IG + F N P++ L+ QLR VG++W +
Sbjct: 557 LLEVADIGPVVASSIRAFFNDPINVELVEQLRAVGVHWPESEGVDAGAKHLAGKTFVLTG 616
Query: 598 --PN-----------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
PN GGKV +SK T+Y+V G + G KL KA +L + ILDE
Sbjct: 617 TLPNLSRDDASQMIEAAGGKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVAILDEDALKA 676
Query: 645 IVKG 648
+ G
Sbjct: 677 LCAG 680
>gi|398834963|ref|ZP_10592357.1| DNA ligase, NAD-dependent [Herbaspirillum sp. YR522]
gi|398219400|gb|EJN05881.1| DNA ligase, NAD-dependent [Herbaspirillum sp. YR522]
Length = 682
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/664 (47%), Positives = 435/664 (65%), Gaps = 32/664 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R +L+ EL+ HN AYY+ D P I D +YD+L EL+ +E +PEL++ DS TQ VG
Sbjct: 17 RARQLRAELNGHNHAYYVLDQPSIPDAEYDRLFQELQALETAHPELVSPDSPTQRVGGAP 76
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SL NGF+D+D++ F+KR+ + L+ + + Y ELKFDG+A++LRY
Sbjct: 77 LPQFDPVRHDVPMLSLGNGFADDDIVAFDKRVQDGLESLQQVRYATELKFDGLAISLRYV 136
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GEN+T NI + IPL L+ P +L+VR EVL+YK DF +LN
Sbjct: 137 DGVLVQAATRGDGTTGENVTANIRTVRAIPLRLHGDKVPAVLDVRGEVLMYKHDFARLNS 196
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ G K+F NPRNAAAG LRQL+ +I + L FF++G+G L G MP SHS LL+WY
Sbjct: 197 RQRDAGQKEFANPRNAAAGSLRQLDSRITAQRTLRFFSYGIGVLEGAEMPPSHSALLDWY 256
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++GL +C E V+SG L+ FY+ I KR LPYEIDGVVYK++ L QK+LGF SRA
Sbjct: 257 VQLGLPVCREREVVSGAEGLLAFYRGIGAKREGLPYEIDGVVYKVDRLDQQKQLGFVSRA 316
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PRFALA+KF ++EALT++ I +Q+GRTG ITPVA L PV + G+T+T ATLHNE E+ R
Sbjct: 317 PRFALAHKFPAQEALTQVLDIEVQVGRTGAITPVARLNPVFVGGVTVTNATLHNEDEVRR 376
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+++IGDTV+V R+G+VIP++ + + RP D++ F +P CP+C+S I+ +E IARC
Sbjct: 377 KDVRIGDTVIVRRAGDVIPEVVAHVPDRRPEDARQFVMPTRCPVCDSPIVRLEDEAIARC 436
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG W++C AQRK GLQHF+SR+AM+I GLG++++E+LV+ ++V T VDLY++ L L
Sbjct: 437 SGGWLKCSAQRKGGLQHFASRRAMDIEGLGEQLVEQLVDRHVVNTPVDLYRLGLSALSEL 496
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+++K A N+L A+QKSK TT RFIYALGIRHVGE TAKELA +F +L+ + A E Q
Sbjct: 497 DRMADKSARNVLDALQKSKQTTLPRFIYALGIRHVGEATAKELARHFGSLDRLLAADEAQ 556
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNN------------------- 597
LL + IG + F + + L+ QLR VG+ W +
Sbjct: 557 LLEVADIGPVVAASIRAFFDDAQNVELVEQLRAVGLEWSEDAGSDSQPKHLAGKTFVLTG 616
Query: 598 --PN-----------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
PN GGKV +SK T+Y+V G + G KL +A +L + ILDE
Sbjct: 617 TLPNLSRDQASQMIEAAGGKVAGSVSKKTSYVVAGAEAGSKLARAEELGLAILDEDALKA 676
Query: 645 IVKG 648
+ G
Sbjct: 677 LCSG 680
>gi|237745525|ref|ZP_04576005.1| DNA ligase [Oxalobacter formigenes HOxBLS]
gi|229376876|gb|EEO26967.1| DNA ligase [Oxalobacter formigenes HOxBLS]
Length = 685
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/664 (48%), Positives = 451/664 (67%), Gaps = 34/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R +L+ E+ R+N AYY+ D P++ D +YD++ EL+++E YPEL+ S TQ VG
Sbjct: 18 RAAKLRSEIERYNYAYYVLDAPVVPDAEYDRVFRELQELEAAYPELVVPGSPTQRVGGAP 77
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SL NG +DE+V F++R+ EL + + +EY AELKFDG+AV+LRYE
Sbjct: 78 LAQFDKVEHRLPMLSLQNGLTDEEVEAFDRRLGEELGIAQ-VEYEAELKFDGLAVSLRYE 136
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT NI I +PL L+ PPE+LEVR EVL++KKDF LN+
Sbjct: 137 KGVLVQAATRGDGMSGENITANIRTIRSVPLHLSELAPPEVLEVRGEVLMFKKDFQDLNR 196
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ G K+F NPRNAAAG LRQL+ +I ++ L FFA+G+GEL G +P + + LLNW+
Sbjct: 197 RQRESGQKEFVNPRNAAAGSLRQLDSQITASRQLKFFAYGIGELDGAPLPETQNRLLNWF 256
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++G+ +C E V+ G L+ F++ I +R LPYEIDGVVYK+N LS Q+KLGF SRA
Sbjct: 257 VQLGIPVCEERKVVRGFKGLMGFFQAIEARRDALPYEIDGVVYKVNRLSEQQKLGFISRA 316
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PRFALA+KF ++E LT++ IN+Q+GRTG ITPVA LKPV + G+T+T ATLHNE E+ R
Sbjct: 317 PRFALAHKFPAQEVLTEVTDINVQVGRTGAITPVARLKPVFVGGVTVTNATLHNEDEVRR 376
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+++IGDTV+V R+G+VIP++ +S+ RP D++ F +P +CP+C S I+ E IARC
Sbjct: 377 KDVRIGDTVIVRRAGDVIPEVIASVPEKRPADAREFVMPALCPVCGSPIVRPEDEAIARC 436
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG WI+C AQ+K GLQ F+SRKAMNI GLG+++I++LV+ I+ A DLY+++ + L L
Sbjct: 437 SGGWIKCAAQKKGGLQLFASRKAMNIEGLGEQLIDQLVDRQIINDAADLYRLDLETLSGL 496
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+++K A+N+L + +S+ TT SRF+YALGIRHVGETTA+ LA +F NL+ + ATEEQ
Sbjct: 497 DRMADKSASNLLDELGRSRETTLSRFLYALGIRHVGETTARSLAEHFGNLQDLMNATEEQ 556
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------- 601
LL + IG + +F + +R LI +L++ G++W +
Sbjct: 557 LLEVDDIGPVVALSIRQFFDDVRNRELIGKLQNDGVHWPERAMKEKPPALPLQDRKFVLT 616
Query: 602 ------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
GGKV N +SK T+Y++ G +PG KL KA +L I+ILDE+ FV
Sbjct: 617 GTLSSLTREAAAEIIRNLGGKVSNSVSKKTDYVLAGSEPGSKLAKAQELGIRILDEEAFV 676
Query: 644 KIVK 647
++VK
Sbjct: 677 QLVK 680
>gi|329912476|ref|ZP_08275756.1| DNA ligase [Oxalobacteraceae bacterium IMCC9480]
gi|327545605|gb|EGF30768.1| DNA ligase [Oxalobacteraceae bacterium IMCC9480]
Length = 679
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/653 (47%), Positives = 432/653 (66%), Gaps = 32/653 (4%)
Query: 27 RHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHT 86
RH AYY+ DNP+I D YD L EL+ +E +PEL+T DS T+ VG V H+
Sbjct: 22 RHAHAYYVLDNPVIPDADYDLLFRELEALEASHPELVTADSPTRRVGAPPLPEFVQVRHS 81
Query: 87 FKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTR 146
M+SL NGF+DEDVI F++R+ + L++ + Y ELK+DG+A+NLRYE G L +A+TR
Sbjct: 82 VPMLSLSNGFADEDVIGFDRRVRDGLQIAGEVAYATELKYDGLAINLRYENGVLVEAATR 141
Query: 147 GDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKF 206
GDG+ GEN+T NI I IPL L+ PP +++VR EVL+YK DF LN + GLK+F
Sbjct: 142 GDGSTGENVTVNIRTIRGIPLRLHTDTPPAIIDVRGEVLLYKADFASLNARQRAAGLKEF 201
Query: 207 TNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGE 266
NPRNAAAG LRQL+ +I + L FFA+G+G L G+ MP SHS LL+WY+ +G+ +C E
Sbjct: 202 ANPRNAAAGSLRQLDSRITAQRALRFFAYGIGTLEGVAMPDSHSGLLDWYRALGIPVCDE 261
Query: 267 YSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFL 326
V+ G L++FY++I KR +LPYEIDGVVYK++ Q++LGF +RAPR+ALA+KF
Sbjct: 262 RKVVHGAAGLLDFYREIGAKRASLPYEIDGVVYKVDDAVQQQQLGFVARAPRYALAHKFP 321
Query: 327 SKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVV 386
++EA T ++ I++Q+GRTG ITPVA L PV + G+ +T ATLHNE E+ RK+I+IGDTV+
Sbjct: 322 AEEASTVVQGIDVQVGRTGAITPVARLAPVAVGGVIVTNATLHNEDEVRRKDIRIGDTVI 381
Query: 387 VHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQ 446
V R+G+VIP++ + I LR D + F +P+ CP+C S I+ +E IARCSG WI+C AQ
Sbjct: 382 VRRAGDVIPEVVAFIADLRGPDVQEFVMPSACPVCGSAIVRLEDEAIARCSGGWIKCAAQ 441
Query: 447 RKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANN 506
RK GL HF SR+AM+I GLG++++ +LV+ ++ T DLYK+ L L R+++K A N
Sbjct: 442 RKGGLLHFVSRRAMDIEGLGEQLVVQLVDREVIRTPADLYKLGLVGLSELARMADKSARN 501
Query: 507 ILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGST 566
+L A++KSK TT +RFIYALGIRHVGE TAKELA +F L+ + ATEEQLL + +G
Sbjct: 502 VLAALEKSKSTTLARFIYALGIRHVGEATAKELAAHFGQLDIVLAATEEQLLEVADVGPV 561
Query: 567 TVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK------------------------- 601
+ ++F PL+ L+ QLR G++W + +
Sbjct: 562 VACSILEFFADPLNVELVEQLRAAGVHWTEHAGRQVVSLPQSGKTFVLTGTLPTLGRDEA 621
Query: 602 -------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
GGKV +SK T+Y+V G G KL KA +L + ILDE ++++K
Sbjct: 622 AALIEAAGGKVAGSVSKKTSYVVAGSDAGSKLAKAQELGLAILDEAGLLQLLK 674
>gi|237747723|ref|ZP_04578203.1| DNA ligase [Oxalobacter formigenes OXCC13]
gi|229379085|gb|EEO29176.1| DNA ligase [Oxalobacter formigenes OXCC13]
Length = 685
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/671 (47%), Positives = 457/671 (68%), Gaps = 34/671 (5%)
Query: 10 NFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLT 69
N L+ + L+ E+ R+NIAYY+ D PI+ D++YD+L +L+++E+ +PEL+ DS T
Sbjct: 11 NSVSLAEQAARLRSEIERYNIAYYVLDAPIVPDSEYDRLFRQLQELEKAHPELVVPDSPT 70
Query: 70 QHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGI 129
Q VG + + V H M+SL NG S+E+V F+KRI++EL +N+EY AELKFDG+
Sbjct: 71 QRVGGLPLAQFEKVEHKIPMLSLQNGLSEEEVAAFDKRISDELD-GENVEYEAELKFDGL 129
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AVNLRYE G L QA+TRGDG GENIT NI + IPL L+ PPE+LEVR EVL++KK
Sbjct: 130 AVNLRYENGLLVQAATRGDGTSGENITNNIKTVRTIPLRLSDLAPPEVLEVRGEVLMFKK 189
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
DF LN+ + K+F NPRNAAAG LRQL+ +I + L FFA+G+GEL+G +P S
Sbjct: 190 DFHDLNRRQRENEQKEFVNPRNAAAGSLRQLDSQITATRQLRFFAYGLGELKGSPLPRSQ 249
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
S LL+W+ ++G+ +C E V+ G L+ F+ +I KR +LPYEIDGVVYK+N ++ Q+K
Sbjct: 250 SALLDWFVQLGIPVCDERKVVKGFKGLMGFFNRIEEKRESLPYEIDGVVYKVNSIAEQQK 309
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF SRAPRFA+A+KF ++E LT++ I++Q+GRTG ITPVA LKPV + G+T+T ATLH
Sbjct: 310 LGFISRAPRFAIAHKFPAQEVLTEVLDIDVQVGRTGAITPVARLKPVFVGGVTVTNATLH 369
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
NE E+ RK+++IGDTV+V R+G+VIP++ + + R D++ F +P +CP+C S II E
Sbjct: 370 NEDEVRRKDVRIGDTVIVRRAGDVIPEVLAVVPERRQADAREFVMPTVCPVCGSPIIRPE 429
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
IARCSG WI+C AQ+K GL F SRKA+ I GLG+++I++LV+ N++ A DLY ++
Sbjct: 430 DEAIARCSGGWIKCPAQKKGGLLLFVSRKALGIEGLGEQLIDQLVDKNVINDAADLYTLD 489
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
+ L +LDR++ K A+N+L ++KSK TTF+RF+YALGIRHVGE TA+ LA YF NL +
Sbjct: 490 LETLSQLDRMAEKSASNLLGELEKSKKTTFARFLYALGIRHVGEATARALAGYFGNLANL 549
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-----------LNNP 598
+A+EEQLL + IG + +F + + L+ +L VG++W L
Sbjct: 550 RQASEEQLLEVADIGPIVAASIKQFFSDERNLALVDKLLGVGLHWPEHEMKEKPEELPFQ 609
Query: 599 NTK----------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
N K GGKV + +S+NT+Y++ G +PG KL KA +L +++
Sbjct: 610 NKKFVLTGTLPSLTRDAAAEIIRNLGGKVSSSVSRNTDYVLAGSEPGSKLAKAEELGVRV 669
Query: 637 LDEKNFVKIVK 647
+DE F+++VK
Sbjct: 670 IDENEFLQLVK 680
>gi|73541575|ref|YP_296095.1| NAD-dependent DNA ligase [Ralstonia eutropha JMP134]
gi|123732913|sp|Q470D2.1|DNLJ_CUPPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|72118988|gb|AAZ61251.1| NAD-dependent DNA ligase [Ralstonia eutropha JMP134]
Length = 711
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/676 (45%), Positives = 429/676 (63%), Gaps = 47/676 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV L+ EL RHN YY+ D P I D +YD L EL+ +E ++PELLT DS TQ VG
Sbjct: 27 RVQWLRDELDRHNYQYYVLDAPTIPDAEYDALFTELQALEAEHPELLTPDSPTQRVGGAP 86
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-------------KLTKNIEYIAE 123
V H M+SL+NGFSDEDV F++R L + +EY E
Sbjct: 87 LSAFDTVRHRVPMLSLNNGFSDEDVTGFDRRCAQGLGRSAAAGGEQDLFSAAEGVEYACE 146
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G L QA+TRGDG GE++T N+ I IPL L P +LEVR E
Sbjct: 147 LKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTVNVRTIKAIPLKLR-GAAPAVLEVRGE 205
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
V +Y++DF KLN + G K F NPRNAAAG LRQL+P+I + L FFA+G+GEL+G+
Sbjct: 206 VFMYRRDFDKLNARQAEAGDKTFVNPRNAAAGSLRQLDPRITAKRPLSFFAYGLGELQGI 265
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
P++HS +L+ + +GL +C E +V+ G L++FY+K+ KR LPY+IDGVVYK+N
Sbjct: 266 ERPATHSAMLDGFATMGLPVCNERAVVKGAQGLLDFYRKVGEKRDQLPYDIDGVVYKVNA 325
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
L+ Q++LGF SRAPRFALA+KF ++E T ++ I +Q+GRTG ITPVA L+PV + G+T+
Sbjct: 326 LAEQEQLGFVSRAPRFALAHKFPAQEMTTIVEDIEVQVGRTGAITPVARLQPVFVGGVTV 385
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK++ IGDTV+V R+G+VIP++ + +L RP+D++ F +P CP+C S
Sbjct: 386 TNATLHNEDEVRRKDVHIGDTVIVRRAGDVIPEVVAVVLERRPDDARAFVMPTACPVCGS 445
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
I +E IARC+G I C AQRK L HF+ R+AM+I GLG K++E+LV+ IV T
Sbjct: 446 HIERLEDEAIARCTGGLI-CAAQRKQALLHFAQRRAMDIEGLGDKVVEQLVDQGIVRTPA 504
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DLYK+ L LDR+++K A N++ AI+ S+ TTF+RFI++LGIRHVGE TAK+LA +F
Sbjct: 505 DLYKLGVAKLAALDRMADKSAGNLVAAIEASRSTTFNRFIFSLGIRHVGEATAKDLARHF 564
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNN------ 597
L+ + A E LL + +G ++ + F +P + +I QLR G++W +
Sbjct: 565 GKLDGLMVADEAALLEVNDVGPVVAQSIVNFFGEPHNVEVIEQLRAAGVHWPESEPVARA 624
Query: 598 ---------------PN-----------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIK 631
P+ G KV +SK T+Y+V G + G KL+KA
Sbjct: 625 PAPLAGKTFVLTGTLPSLSREAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLDKAEA 684
Query: 632 LNIKILDEKNFVKIVK 647
L + +LDE + +++
Sbjct: 685 LGVPVLDEAGMLALLE 700
>gi|323526494|ref|YP_004228647.1| NAD-dependent DNA ligase [Burkholderia sp. CCGE1001]
gi|323383496|gb|ADX55587.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1001]
Length = 688
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 309/678 (45%), Positives = 438/678 (64%), Gaps = 40/678 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S + R L+ EL R N AYY+ D P + D +YD+L EL+ IE ++P+L+ DS TQ
Sbjct: 12 SAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDKLFKELESIEAQHPDLIVPDSPTQR 71
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-----KLTKNIEYIAELKF 126
VG + V H M+SL+NGF+DED++ F+KR+ + L + ++Y ELKF
Sbjct: 72 VGGEAASGFEPVVHDQPMLSLNNGFADEDIVAFDKRVGDALGNNAKEPPVPVDYATELKF 131
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+A++LRY G QA+TRGDG GEN+T NI + IPL L K P +L+VR EVL+
Sbjct: 132 DGLAISLRYVDGVFVQAATRGDGTTGENVTENIRTVRSIPLKLKGKRVPHILDVRGEVLM 191
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
+K+DF +LN+ + G K+F NPRNAAAG LRQL+PKI + L FFA+G+G L GM MP
Sbjct: 192 FKRDFERLNERQRAAGHKEFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMEMP 251
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
++HSELL+WY+++GL + E +V+ G L+ F++ + KR LPY+IDGVVYK+N
Sbjct: 252 ATHSELLDWYKELGLPVNSERAVVKGAEGLLAFFRAVGEKRDKLPYDIDGVVYKVNRRDE 311
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+T A
Sbjct: 312 QDALGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNA 371
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKII 426
TLHNE E+ RK+I+IGDTV+V R+G+VIP++ S++L RP+D++ F +P CP+C S I
Sbjct: 372 TLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSALLERRPDDAREFVMPTHCPVCGSSIE 431
Query: 427 YIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY 486
+ IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T DL+
Sbjct: 432 RLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPADLF 490
Query: 487 KINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546
+ F L LDR ++K A N+L +++K+K TT +RFIYALGIRHVGE+TAK+LA +F +L
Sbjct: 491 NLGFSTLAELDRFADKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSL 550
Query: 547 ECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP------- 598
+ + +A+ E LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 551 DPIMEASVEALLEVNDVGPVVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQ 610
Query: 599 --------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKL 632
G KV +SK T+Y+V G + G KL KA +L
Sbjct: 611 GVLAGKTIVLTGTLPTLAREEAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEEL 670
Query: 633 NIKILDEKNFVKIVKGFS 650
I +LDE K+++G S
Sbjct: 671 GIPVLDEDGMRKLLEGQS 688
>gi|186476101|ref|YP_001857571.1| DNA ligase, NAD-dependent [Burkholderia phymatum STM815]
gi|254781277|sp|B2JID1.1|DNLJ_BURP8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|184192560|gb|ACC70525.1| DNA ligase, NAD-dependent [Burkholderia phymatum STM815]
Length = 683
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 309/674 (45%), Positives = 437/674 (64%), Gaps = 36/674 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S + R L+ EL R N AYY+ D P + D +YD+L EL++IE ++P+L+T DS TQ
Sbjct: 12 SAPAERALWLRDELERANYAYYVLDQPDLPDAEYDRLFKELQQIESEHPDLITPDSPTQR 71
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + V H M+SL+NGFSDED+ F+KR+++ L T ++Y ELKFDG+A+
Sbjct: 72 VGGEVASGFRPVVHDMPMLSLNNGFSDEDIAAFDKRVSDTLHHTP-VDYACELKFDGLAI 130
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+LRY G QA+TRGDG GE++T N+ I IPL L K P+L++VR EVL++++DF
Sbjct: 131 SLRYVDGQFTQAATRGDGATGEDVTENVRTIRSIPLKLKGKRVPKLVDVRGEVLMFRRDF 190
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN+ + G ++F NPRNAAAG LRQL+PK+ + L FFA+G+G L G+ MP +HSE
Sbjct: 191 DKLNQRQRDAGQREFANPRNAAAGSLRQLDPKMTAQRPLSFFAYGIGVLDGIEMPGTHSE 250
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
LL+WY ++GL + E +V+ G ++ F+ K+ KR LPY+IDGVVYK+N Q LG
Sbjct: 251 LLDWYHEMGLPVNSERAVVQGAEGVLGFFHKVGEKRDKLPYDIDGVVYKVNRRDEQDALG 310
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+T ATLHNE
Sbjct: 311 FVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARLEPVFVGGATVTNATLHNE 370
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
E+ RK+I+IGDTV+V R+G+VIP++ ++L RP D++ F +P CP+C S I +
Sbjct: 371 DEVRRKDIRIGDTVIVRRAGDVIPEVVGALLERRPPDAREFVMPTQCPVCGSAIERLPDE 430
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
IARCSG C AQRK L HF+ R+A++I GLG+K+I++LV N+V T DL+ + F
Sbjct: 431 AIARCSGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTPADLFNLGFA 489
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
L LDR + K A N++ +++K+K TT +RFIYALGIRHVGE+TAK+LA +F +L+ +
Sbjct: 490 TLAELDRFAEKSAQNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLARHFGSLDPIMS 549
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP------------ 598
AT E+LL + +G +A +F + +R +I QLR G + W P
Sbjct: 550 ATVEELLEVNDVGPIVAEAIHQFFAEEHNRTVIEQLRAPGKVTWAEGPPAPKAPQGVLAG 609
Query: 599 ---------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
G KV +SK T+Y+V G + G KL KA +L I +L
Sbjct: 610 KTVVLTGTLPNMGRDEAKELLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGIPVL 669
Query: 638 DEKNFVKIVKGFST 651
DE K+++G +T
Sbjct: 670 DEDGMRKLLEGQTT 683
>gi|387902562|ref|YP_006332901.1| DNA ligase [Burkholderia sp. KJ006]
gi|387577454|gb|AFJ86170.1| DNA ligase [Burkholderia sp. KJ006]
Length = 691
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 306/679 (45%), Positives = 435/679 (64%), Gaps = 43/679 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ R L+ +L R N AYY+ D P + D +YD+L EL+++E +PEL+T DS TQ
Sbjct: 11 SQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLEADHPELVTPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK--------LTKNIEYIAE 123
VG V H M+SL+NGFSD+D++ F+KR+ + L +T +EY E
Sbjct: 71 VGGAVASGFTPVVHDAPMLSLNNGFSDDDIVAFDKRVADALDKPTDLAGSVTDPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G QASTRGDG GE++T N+ I IPL L + P LL+VR E
Sbjct: 131 LKFDGLAISLRYERGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + ++F NPRNAAAG LRQL+PKI + L FF++G+G L GM
Sbjct: 191 VLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFSYGIGVLDGM 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
MP +HS LL+WY+ +GL + E +V+ G L+EF++K+ +R +LPY+IDGVVYK+N
Sbjct: 251 PMPDTHSALLDWYEALGLPVNRERAVVRGAQGLLEFFRKVGERRESLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q +LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ ++L RP D+ F +P CP+C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLERRPADAAEFVMPTECPVCGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
KI + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 KIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L LDR + K A N+L +++K+K TT +RFIY LGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L+ + A+ E+LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLDPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIDQLRAPGKVTWPEGPPAPK 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y+V G + G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKA 669
Query: 630 IKLNIKILDEKNFVKIVKG 648
+L I +LDE ++++G
Sbjct: 670 EELGIPVLDEDGLHQLLEG 688
>gi|134296034|ref|YP_001119769.1| DNA ligase [Burkholderia vietnamiensis G4]
gi|166215568|sp|A4JF81.1|DNLJ_BURVG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|134139191|gb|ABO54934.1| DNA ligase, NAD-dependent [Burkholderia vietnamiensis G4]
Length = 691
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 306/679 (45%), Positives = 435/679 (64%), Gaps = 43/679 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ R L+ +L R N AYY+ D P + D +YD+L EL+++E +PEL+T DS TQ
Sbjct: 11 SQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLEADHPELVTPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK--------LTKNIEYIAE 123
VG V H M+SL+NGFSD+D++ F+KR+ + L +T +EY E
Sbjct: 71 VGGAVASGFTPVVHDAPMLSLNNGFSDDDIVAFDKRVADALDKPTDLAGSVTDPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G QASTRGDG GE++T N+ I IPL L + P LL+VR E
Sbjct: 131 LKFDGLAISLRYERGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + ++F NPRNAAAG LRQL+PKI + L FF++G+G L GM
Sbjct: 191 VLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFSYGIGVLDGM 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
MP +HS LL+WY+ +GL + E +V+ G L+EF++K+ +R +LPY+IDGVVYK+N
Sbjct: 251 PMPDTHSALLDWYEALGLPVNRERAVVRGAQGLLEFFRKVGERRESLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q +LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ ++L RP D+ F +P CP+C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLERRPVDAAEFVMPTECPVCGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
KI + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 KIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L LDR + K A N+L +++K+K TT +RFIY LGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L+ + A+ E+LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLDPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIDQLRAPGKVTWPEGPPAPK 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y+V G + G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKA 669
Query: 630 IKLNIKILDEKNFVKIVKG 648
+L I +LDE ++++G
Sbjct: 670 EELGIPVLDEDGLHQLLEG 688
>gi|307729327|ref|YP_003906551.1| NAD-dependent DNA ligase [Burkholderia sp. CCGE1003]
gi|307583862|gb|ADN57260.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1003]
Length = 688
Score = 636 bits (1641), Expect = e-179, Method: Compositional matrix adjust.
Identities = 311/678 (45%), Positives = 437/678 (64%), Gaps = 40/678 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S + R L+ EL R N AYY+ D P + D +YD+L EL+ IE ++P+L+ DS TQ
Sbjct: 12 SAPAERAAWLRTELERANYAYYVLDQPDLPDAEYDRLFKELESIEAEHPDLIVPDSPTQR 71
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-----KLTKNIEYIAELKF 126
VG + V H M+SL+NGF+DED+I F+KR+ + L + ++Y ELKF
Sbjct: 72 VGGEAASGFEPVVHDQPMLSLNNGFADEDIIAFDKRVGDALGNNAKEPPVPVDYATELKF 131
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+A++LRY G QA+TRGDG GEN+T NI + IPL L K P +L+VR EVL+
Sbjct: 132 DGLAISLRYVDGVFVQAATRGDGTTGENVTENIRTVRSIPLRLKGKRVPHILDVRGEVLM 191
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
+K+DF +LN+ + G K+F NPRNAAAG LRQL+ KI + L FFA+G+G L GM MP
Sbjct: 192 FKRDFERLNERQRAAGHKEFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGMEMP 251
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
++HSELL+WY+++GL + E +V+ G L+ F++ + KR LPY+IDGVVYK+N
Sbjct: 252 ATHSELLDWYKELGLPVNAERAVVKGAEGLLAFFRAVGEKRDKLPYDIDGVVYKVNRRDE 311
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q+ LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+T A
Sbjct: 312 QEALGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNA 371
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKII 426
TLHNE E+ RK+I+IGDTV+V R+G+VIP++ S++L RP D++ F +P CP+C S I
Sbjct: 372 TLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSALLDRRPADAREFVMPTHCPVCGSNIE 431
Query: 427 YIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY 486
+ IARC+G I C AQRK L HF+ R+AM+I GLG+K+I++LV N+V T DL+
Sbjct: 432 RLPDEAIARCTGGLI-CPAQRKQALWHFAQRRAMDIDGLGEKIIDQLVEQNLVRTPADLF 490
Query: 487 KINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546
+ F L LDR ++K A N+L +++K+K TT +RFIYALGIRHVGE+TAK+LA +F +L
Sbjct: 491 NLGFATLAELDRFADKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSL 550
Query: 547 ECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP------- 598
+ + A+ E LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 551 DPIMDASVEALLEVNDVGPVVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQ 610
Query: 599 --------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKL 632
G KV +SK T+Y+V G + G KL KA +L
Sbjct: 611 GVLAGKTIVLTGTLPTLSREDAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEEL 670
Query: 633 NIKILDEKNFVKIVKGFS 650
I +LDE K+++G S
Sbjct: 671 GIPVLDEDGMRKLLEGQS 688
>gi|377820498|ref|YP_004976869.1| NAD-dependent DNA ligase [Burkholderia sp. YI23]
gi|357935333|gb|AET88892.1| DNA ligase, NAD-dependent [Burkholderia sp. YI23]
Length = 692
Score = 635 bits (1639), Expect = e-179, Method: Compositional matrix adjust.
Identities = 304/667 (45%), Positives = 433/667 (64%), Gaps = 36/667 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L+ EL R N AYY+ D P + D +YD L EL+ IE +P+L+T DS TQ VG
Sbjct: 28 RAAWLRAELERANYAYYVLDQPDLPDAEYDTLFKELQGIEADHPDLITPDSPTQRVGGEV 87
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E V H M+SL+NGF+DED+ F+KR+++ L +EY ELKFDG+A++LRYE
Sbjct: 88 AEGFTPVVHDVPMLSLNNGFADEDIAAFDKRVSDALGHA-GVEYACELKFDGLAISLRYE 146
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G QA+TRGDG GE++T N+ I IPL L K P+ L+VR EVL++K+DF +LN+
Sbjct: 147 DGRFVQAATRGDGATGEDVTANVRTIRSIPLTLKGKNVPKRLDVRGEVLMFKRDFERLNQ 206
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ GL++F NPRNAAAG LRQL+PK+ + L FFA+G+G L G +MP++H+ LL+WY
Sbjct: 207 RQRDAGLREFANPRNAAAGGLRQLDPKMTAQRSLSFFAYGIGVLEGADMPATHAALLDWY 266
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+++GL + E +V+ G + L+ F+ K+ KR LPY+IDGVVYK++ Q KLGF SRA
Sbjct: 267 KEMGLPVNAERAVVEGADGLLGFFHKVGEKREKLPYDIDGVVYKVDRRDEQDKLGFVSRA 326
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PRFALA+KF ++EALT++ AI++Q+GRTG ITPVA L PV + G T+T ATLHNE E+ R
Sbjct: 327 PRFALAHKFPAQEALTELLAIDVQVGRTGAITPVARLAPVFVGGATVTNATLHNEDEVRR 386
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGDTV V R+G+VIP++ +IL RP D++ F +P CP+C SKI + IARC
Sbjct: 387 KDIRIGDTVTVRRAGDVIPEVVGAILERRPADAREFVMPTECPVCGSKIERLPDEAIARC 446
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T DL+ + F L L
Sbjct: 447 TGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPADLFHLGFSTLAAL 505
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR ++K A N++ +++K+ TT +RFIYALGIRHVGE+TAK+LA +F +L+ + A+ E+
Sbjct: 506 DRFADKSAQNLIDSLEKASKTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMSASVEE 565
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP------------------ 598
LL + +G +A F ++ ++ +I QLR + W P
Sbjct: 566 LLEVNDVGPIVAEAIYNFFSEAHNQHVIEQLR-AKVSWPEGPPAPKAPQGVLAGKTVVLT 624
Query: 599 ---------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
T G KV +SK T+Y+V G + G KL KA +L + +LDE
Sbjct: 625 GTLPTLSREEAKEMLETAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGVPVLDEDGMK 684
Query: 644 KIVKGFS 650
K+++G +
Sbjct: 685 KLLEGVT 691
>gi|167581473|ref|ZP_02374347.1| DNA ligase, NAD-dependent [Burkholderia thailandensis TXDOH]
Length = 691
Score = 635 bits (1639), Expect = e-179, Method: Compositional matrix adjust.
Identities = 305/676 (45%), Positives = 437/676 (64%), Gaps = 43/676 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L+ EL R N AYY+ D P + D +YD+L EL++IE ++P+L+T DS TQ VG
Sbjct: 16 RAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLVTPDSPTQRVGGEV 75
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK--------LTKNIEYIAELKFDG 128
V H M+SL+NGFSD+DV+ F+KR+ + L +T+ +EY ELKFDG
Sbjct: 76 ASGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKPTDLVGTVTEPVEYACELKFDG 135
Query: 129 IAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYK 188
+A++LRYE G QASTRGDG GE++T NI + IPL L K P +L+VR EVL++K
Sbjct: 136 LAISLRYENGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGKRVPRMLDVRGEVLMFK 195
Query: 189 KDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSS 248
+DF +LN+ + G ++F NPRNAAAG LRQL+ KI ++ L FFA+G+G L G+ MP +
Sbjct: 196 RDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFFAYGIGVLDGVEMPDT 255
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
HS LL+WY+ +GL + E +V+ G L+EF+ + +R +LPY+IDGVVYK+N Q
Sbjct: 256 HSSLLDWYETLGLPVNRERAVVRGAAGLLEFFHSVGARRESLPYDIDGVVYKVNRRDEQD 315
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
+LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+T ATL
Sbjct: 316 RLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATL 375
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYI 428
HNE E+ RK+I+IGDTV+V R+G+VIP++ S++L RP D++ F +P CP C S++ +
Sbjct: 376 HNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSAVLDRRPADAREFVMPTECPECGSRVERL 435
Query: 429 ESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488
IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T DL+ +
Sbjct: 436 PDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPADLFNL 494
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
F L+ LDR + K A N++ +++K+K TT +RFIYALGIRHVGE+TAK+LA +F +L+
Sbjct: 495 GFSTLVELDRFAEKSAQNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDP 554
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP--------- 598
+ A+ ++LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 555 IMDASIDELLEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAKGKVTWPEGPPAPRAPQGV 614
Query: 599 ------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNI 634
G KV +SK T+Y+V G G KL KA +L I
Sbjct: 615 LAGKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGI 674
Query: 635 KILDEKNFVKIVKGFS 650
+LDE K+++G +
Sbjct: 675 PVLDEAGMHKLLEGHA 690
>gi|330817444|ref|YP_004361149.1| DNA ligase [Burkholderia gladioli BSR3]
gi|327369837|gb|AEA61193.1| DNA ligase [Burkholderia gladioli BSR3]
Length = 691
Score = 635 bits (1639), Expect = e-179, Method: Compositional matrix adjust.
Identities = 309/679 (45%), Positives = 431/679 (63%), Gaps = 44/679 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ S R L+ EL R N AYY+ D P + D +YD+L EL++IE ++P+L+T DS TQ
Sbjct: 11 SQPSERAAWLRNELERANHAYYVLDQPDLPDAEYDRLFRELQQIEAEHPDLITPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK---------LTKNIEYIA 122
VG V H M+SL+NGFSDED+ F+KR+ + L +EY
Sbjct: 71 VGGEAATGFTPVVHDAPMLSLNNGFSDEDIAAFDKRVADALDKAPADLAGTAIDPVEYAC 130
Query: 123 ELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRC 182
ELKFDG+A++LRYE+G QA+TRGDG GE++T N+ I IPL L K PP LL+VR
Sbjct: 131 ELKFDGLAISLRYEHGRFVQAATRGDGTTGEDVTENVRTIRSIPLTLKGKNPPALLDVRG 190
Query: 183 EVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG 242
EVL+YK+DF +LN+ + ++F NPRNAAAG LRQL+ KI + L FFA+G+G L G
Sbjct: 191 EVLMYKRDFARLNQRQREAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLEG 250
Query: 243 MNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKIN 302
MP +HS LL+WY GL + E +V+ G L+ F+ K+ +R LPY+IDGVVYK+N
Sbjct: 251 ATMPDTHSGLLDWYAGFGLPVNRERAVVKGAEGLLAFFHKVGEQREALPYDIDGVVYKVN 310
Query: 303 CLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGIT 362
Q++LGF SRAPRFALA+KF ++EALT++ AI +Q+GRTG ITPVA L+PV + G T
Sbjct: 311 RRDEQERLGFVSRAPRFALAHKFPAQEALTRLLAIEVQVGRTGAITPVARLEPVFVGGAT 370
Query: 363 ITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICN 422
+T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ S++L RP D+ F +P CP+C
Sbjct: 371 VTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSALLDRRPADAAEFVMPTECPVCG 430
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
S+I + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 SRIERLPEEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTP 489
Query: 483 VDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY 542
DL+ + F L LDR ++K A N+L +++K++ TT RFIYALGIRHVGE+TAK+LA +
Sbjct: 490 ADLFHLGFATLAALDRFADKSAQNLLDSLEKARHTTLGRFIYALGIRHVGESTAKDLAKH 549
Query: 543 FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP---- 598
F +L+ + AT EQLL + +G ++ +F + +R +I+QLR+ + W P
Sbjct: 550 FGSLQPIMDATTEQLLEVNDVGPVVAESLHQFFAEEHNRTVIAQLRE-KVDWPEGPPAPR 608
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y+V G + G KL KA
Sbjct: 609 EPQGVLAGKTVVLTGTLPTLGRDEAKALLEAAGAKVTGSVSKKTDYVVAGAEAGSKLAKA 668
Query: 630 IKLNIKILDEKNFVKIVKG 648
+L I +LDE ++KG
Sbjct: 669 EELGIPVLDEDGMHLLLKG 687
>gi|167619582|ref|ZP_02388213.1| DNA ligase, NAD-dependent [Burkholderia thailandensis Bt4]
Length = 691
Score = 635 bits (1639), Expect = e-179, Method: Compositional matrix adjust.
Identities = 304/676 (44%), Positives = 437/676 (64%), Gaps = 43/676 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L+ EL R N AYY+ D P + D +YD+L EL++IE ++P+L+T DS TQ VG
Sbjct: 16 RAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLVTPDSPTQRVGGEV 75
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK--------LTKNIEYIAELKFDG 128
V H M+SL+NGFSD+DV+ F+KR+ + L +T+ +EY ELKFDG
Sbjct: 76 ASGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKPTDLAGTVTEPVEYACELKFDG 135
Query: 129 IAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYK 188
+A++LRYE G QASTRGDG GE++T NI + IPL L K P +L+VR EVL+++
Sbjct: 136 LAISLRYENGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGKRVPRMLDVRGEVLMFR 195
Query: 189 KDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSS 248
+DF +LN+ + G ++F NPRNAAAG LRQL+ KI ++ L FFA+G+G L G+ MP +
Sbjct: 196 RDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFFAYGIGVLDGVEMPDT 255
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
HS LL+WY+ +GL + E +V+ G L+EF+ + +R +LPY+IDGVVYK+N Q
Sbjct: 256 HSSLLDWYETLGLPVNRERAVVRGAAGLLEFFHSVGARRESLPYDIDGVVYKVNRRDEQD 315
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
+LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+T ATL
Sbjct: 316 RLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATL 375
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYI 428
HNE E+ RK+I+IGDTV+V R+G+VIP++ S++L RP D++ F +P CP C S++ +
Sbjct: 376 HNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSAVLDRRPADAREFVMPTECPECGSRVERL 435
Query: 429 ESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488
IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T DL+ +
Sbjct: 436 PDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPADLFNL 494
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
F L+ LDR + K A N++ +++K+K TT +RFIYALGIRHVGE+TAK+LA +F +L+
Sbjct: 495 GFSTLVELDRFAEKSAQNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDP 554
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP--------- 598
+ A+ ++LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 555 IMDASIDELLEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAKGKVTWPEGPPAPRAPQGV 614
Query: 599 ------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNI 634
G KV +SK T+Y+V G G KL KA +L I
Sbjct: 615 LAGKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGI 674
Query: 635 KILDEKNFVKIVKGFS 650
+LDE K+++G +
Sbjct: 675 PVLDEAGMHKLLEGHA 690
>gi|254252054|ref|ZP_04945372.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158]
gi|124894663|gb|EAY68543.1| NAD-dependent DNA ligase [Burkholderia dolosa AUO158]
Length = 691
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 302/679 (44%), Positives = 435/679 (64%), Gaps = 43/679 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ R L+ +L R N AYY+ D P + D +YD+L EL+++E +PEL+T DS TQ
Sbjct: 11 SQPDARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFLELQQLEADHPELVTPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--------KLTKNIEYIAE 123
VG V H M+SL+NGF+D+D++ F+KR+ + L +T +EY E
Sbjct: 71 VGGAVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALAKTTDLAGSVTDPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G QA+TRGDG GE++T N+ I IPL L + P +L+VR E
Sbjct: 131 LKFDGLAISLRYENGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGRTVPAVLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + G ++F NPRNAAAG LRQL+PKI + L FFA+G+G L GM
Sbjct: 191 VLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGM 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
MP +HS LL+WY+ +GL + E +V+ G + L+ F++++ KR LPY+IDGVVYK+N
Sbjct: 251 PMPDTHSALLDWYEALGLPVNRERAVVHGADGLLAFFRRVGEKRDALPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q +LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ ++L RP D+ F +P CP+C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFVMPTECPVCGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
KI + IARC+G + C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 KIERLPDEAIARCTGGLV-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L LDR + K A N+L +++K+K TT +RFIY LGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFSTLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L + A+ ++LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLTPIMDASIDELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPK 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y++ G + G KL KA
Sbjct: 610 APQGVLAGKTIVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVIAGAEAGSKLAKA 669
Query: 630 IKLNIKILDEKNFVKIVKG 648
+L I +LDE ++++G
Sbjct: 670 EELGIPVLDEDGLHQLLEG 688
>gi|385209098|ref|ZP_10035966.1| DNA ligase, NAD-dependent [Burkholderia sp. Ch1-1]
gi|385181436|gb|EIF30712.1| DNA ligase, NAD-dependent [Burkholderia sp. Ch1-1]
Length = 688
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 308/676 (45%), Positives = 438/676 (64%), Gaps = 40/676 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S + R L+ EL R N AYY+ D P + D +YD+L EL+ IE ++P+L+ DS TQ
Sbjct: 12 SAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDRLFKELESIETEHPDLIVPDSPTQR 71
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN-----IEYIAELKF 126
VG + V H M+SL+NGF+DED++ F+KR+ + L + +EY AELKF
Sbjct: 72 VGGEAASGFEPVVHEQPMLSLNNGFADEDIVAFDKRVGDALGKNASEPPVPVEYAAELKF 131
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+A++LRY G QASTRGDG GEN+T N+ I IPL L K P++L+VR EVL+
Sbjct: 132 DGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLRLKGKRVPQVLDVRGEVLM 191
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
+K+DF +LN+ + K+F NPRNAAAG LRQL+ KI + L FF++G+G L GM+MP
Sbjct: 192 FKRDFERLNERQRAAEQKEFANPRNAAAGSLRQLDSKITAQRPLSFFSYGIGVLEGMDMP 251
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
++HSELL+WY+++GL + GE +V+ G L+ F+ + KR LPY+IDGVVYK+N
Sbjct: 252 ATHSELLDWYKELGLPVNGERAVVHGAEGLLGFFHAVGEKREKLPYDIDGVVYKVNRRDE 311
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q+ LGF SRAPRFALA+KF ++EALT++ AI++Q+GRTG ITPVA L+PV + G T+T A
Sbjct: 312 QEALGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEPVFVGGATVTNA 371
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKII 426
TLHNE E+ RK+I+IGDTV+V R+G+VIP++ S++L RP+D++ F +P CP+C S I
Sbjct: 372 TLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSALLDRRPDDAREFVMPTHCPVCGSNIE 431
Query: 427 YIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY 486
+ IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T DL+
Sbjct: 432 RLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPADLF 490
Query: 487 KINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546
+ F L LDR + K A N+L +++K+K TT +RFIYALGIRHVGE+TAK+LA +F +L
Sbjct: 491 NLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSL 550
Query: 547 ECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP------- 598
+ + +A+ E LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 551 DPIMEASVEALLEVNDVGPVVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPRAPQ 610
Query: 599 --------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKL 632
G KV +SK T+Y+V G + G KL KA +L
Sbjct: 611 GVLAGKTVVLTGTLPSLAREEAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEEL 670
Query: 633 NIKILDEKNFVKIVKG 648
I +LDE K+++G
Sbjct: 671 GIPVLDEDGMRKLLEG 686
>gi|413962892|ref|ZP_11402119.1| NAD-dependent DNA ligase [Burkholderia sp. SJ98]
gi|413928724|gb|EKS68012.1| NAD-dependent DNA ligase [Burkholderia sp. SJ98]
Length = 692
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 302/672 (44%), Positives = 439/672 (65%), Gaps = 36/672 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
++ + R L+ EL R N AYY+ D P + D +YD L EL+ IE ++P+L+T DS TQ
Sbjct: 23 ARPAERAAWLRSELERANYAYYVLDQPDLPDAEYDTLFKELQGIETEHPDLITPDSPTQR 82
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG E V H M+SL+NGF+DED+ F+KR+++ L ++EY ELKFDG+A+
Sbjct: 83 VGGEVAEGFTPVVHDVPMLSLNNGFADEDIAAFDKRVSDALGHA-SVEYACELKFDGLAI 141
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+LRYE G+ QA+TRGDG GE++T N+ I +PL L K P+ L+VR EVL++K+DF
Sbjct: 142 SLRYEDGHFVQAATRGDGATGEDVTANVRTIRSVPLTLKGKNVPKRLDVRGEVLMFKRDF 201
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
+LN + G ++F NPRNAAAG LRQL+PK+ + L FFA+G+G L G MP++H+
Sbjct: 202 ERLNARQREAGQREFANPRNAAAGGLRQLDPKMTAQRSLSFFAYGIGVLEGAEMPATHAA 261
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
LL+WY+++GL + E +V+ G + L+ F+ +I KR LPY+IDGVVYK++ Q KLG
Sbjct: 262 LLDWYKEMGLPVNAERAVVEGADGLLAFFHRIGEKREKLPYDIDGVVYKVDRRDEQDKLG 321
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F SRAPRFALA+KF ++EALT++ AI++Q+GRTG ITPVA L PV + G T+T ATLHNE
Sbjct: 322 FVSRAPRFALAHKFPAQEALTQLLAIDVQVGRTGAITPVARLAPVFVGGATVTNATLHNE 381
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
E+ RK+I+IGDTV V R+G+VIP++ +IL RP D++ F +P CP+C SKI +
Sbjct: 382 DEVRRKDIRIGDTVTVRRAGDVIPEVVGAILERRPADAREFVMPTECPVCGSKIERLPDE 441
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T DL+ + F
Sbjct: 442 AIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPADLFNLGFS 500
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
L LDR ++K A N++ +++K++ TT +RFIYALGIRHVGE+TAK+LA +F +L+ +
Sbjct: 501 TLAALDRFADKSAQNLIDSLEKARKTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMA 560
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP------------- 598
A+ E+LL + +G +A F ++ ++ +I QLR V + W P
Sbjct: 561 ASVEELLEVNDVGPIVAEAIHNFFSEEHNKHVIEQLR-VKVSWPEGPPAPKAPQGVLAGK 619
Query: 599 --------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
+ G KV +SK T+Y+V G + G KL KA +L + +LD
Sbjct: 620 TVVLTGTLPTLSREEAKEMLESAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGVPVLD 679
Query: 639 EKNFVKIVKGFS 650
E+ K+++G +
Sbjct: 680 EEAMRKLLEGVT 691
>gi|167837047|ref|ZP_02463930.1| DNA ligase, NAD-dependent [Burkholderia thailandensis MSMB43]
gi|424903691|ref|ZP_18327204.1| DNA ligase (NAD+) [Burkholderia thailandensis MSMB43]
gi|390931564|gb|EIP88965.1| DNA ligase (NAD+) [Burkholderia thailandensis MSMB43]
Length = 691
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 308/682 (45%), Positives = 444/682 (65%), Gaps = 45/682 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ + R L+ EL R N AYY+ D P + D +YD+L EL++IE ++P+L+T DS TQ
Sbjct: 11 SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQQIEAEHPDLVTPDSPTQR 70
Query: 72 VG-LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK--------LTKNIEYIA 122
VG V G + VH T M+SL+NGFSD+DV+ F+KR+ + L +T+ +EY
Sbjct: 71 VGGEVAGGFTPVVHDT-PMLSLNNGFSDDDVVAFDKRVADGLDKATDLAGTVTEPVEYAC 129
Query: 123 ELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRC 182
ELKFDG+A++LRYE G QASTRGDG GE++T NI + IPL L ++ P +L+VR
Sbjct: 130 ELKFDGLAISLRYEGGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGRHVPRMLDVRG 189
Query: 183 EVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG 242
EVL++K+DF +LN+ + G ++F NPRNAAAG LRQL+ KI ++ L FFA+G+G L G
Sbjct: 190 EVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFFAYGIGVLDG 249
Query: 243 MNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKIN 302
+ MP +HS LL+WY+ +GL + E +V+ G L+ F+ + +R +LPY+IDGVVYK+N
Sbjct: 250 VEMPGTHSGLLDWYETLGLPVNRERAVVRGAAGLLGFFHSVGERRESLPYDIDGVVYKVN 309
Query: 303 CLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGIT 362
Q +LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T
Sbjct: 310 RRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGAT 369
Query: 363 ITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICN 422
+T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ S++L RP D++ F +P CP C
Sbjct: 370 VTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSAVLDRRPADAREFVMPTECPECG 429
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
S+I + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 430 SRIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTP 488
Query: 483 VDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY 542
DL+ + F L+ LDR + K A N++ +++K+K TT +RFIYALGIRHVGE+TAK+LA +
Sbjct: 489 ADLFNLGFSTLVELDRFAEKSAQNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKH 548
Query: 543 FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP--- 598
F +L+ + A+ ++LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 549 FGSLDPVMDASIDELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAKGKVTWPEGPPAP 608
Query: 599 ------------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEK 628
G KV +SK T+Y+V G G KL K
Sbjct: 609 RAPQGVLAGKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAK 668
Query: 629 AIKLNIKILDEKNFVKIVKGFS 650
A +L I +LDE K+++G +
Sbjct: 669 AEELGIPVLDEAGMHKLLEGHA 690
>gi|421479307|ref|ZP_15927010.1| DNA ligase (NAD+) [Burkholderia multivorans CF2]
gi|400223214|gb|EJO53536.1| DNA ligase (NAD+) [Burkholderia multivorans CF2]
Length = 691
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 304/679 (44%), Positives = 435/679 (64%), Gaps = 43/679 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ R L+ +L R N AYY+ D P + D +YD+L EL+++E +P+L+T DS TQ
Sbjct: 11 SQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLESDHPDLVTPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--------KLTKNIEYIAE 123
VG V H M+SL+NGF+D+D++ F+KR+ + L +T +EY E
Sbjct: 71 VGGAVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKTTDLAGSVTDPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE+G QASTRGDG GE++T N+ I IPL L + P +L+VR E
Sbjct: 131 LKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGERVPAVLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + ++F NPRNAAAG LRQL+PKI + L FFA+G+G L GM
Sbjct: 191 VLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGM 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
MP +HS LL+WY+ +GL + E +V+ G L++F++K+ KR +LPY+IDGVVYK+N
Sbjct: 251 PMPDTHSALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEKRESLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q +LGF SRAPRFALA+KF ++EALTK+ AI +Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ ++L RP D+ F +P CP+C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFVMPTECPVCGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
KI + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 KIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L LDR + K A N+L +++K+K TT +RFIYALGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L+ + AT ++LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLDPIMNATIDELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPK 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y++ G + G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPNLTRDDAKEMLEAAGAKVAGSVSKKTDYVIAGAEAGSKLAKA 669
Query: 630 IKLNIKILDEKNFVKIVKG 648
L I +LDE ++++G
Sbjct: 670 EALGIPVLDEDGLHQLLEG 688
>gi|407713940|ref|YP_006834505.1| DNA ligase [Burkholderia phenoliruptrix BR3459a]
gi|407236124|gb|AFT86323.1| DNA ligase (NAD+) [Burkholderia phenoliruptrix BR3459a]
Length = 688
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 308/678 (45%), Positives = 436/678 (64%), Gaps = 40/678 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S + R L+ EL R N AYY+ D P + D +YD+L EL+ IE ++P+L+ DS TQ
Sbjct: 12 SAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDKLFKELESIEAQHPDLIVPDSPTQR 71
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-----KLTKNIEYIAELKF 126
VG + V H M+SL+NGF+DED++ F+KR+ + L + ++Y ELKF
Sbjct: 72 VGGEAASGFEPVVHDQPMLSLNNGFADEDIVAFDKRVGDALGNNAKEPPVPVDYATELKF 131
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+A++LRY G QA+TRGDG GEN+T NI + IPL L K P +L+VR EVL+
Sbjct: 132 DGLAISLRYVDGVFVQAATRGDGTTGENVTENIRTVRSIPLKLKGKRVPHILDVRGEVLM 191
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
+K+DF +LN+ + G K+F NPRNAAAG LRQL+PKI + L FFA+G+G L GM MP
Sbjct: 192 FKRDFERLNERQRAAGHKEFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGMEMP 251
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
++HSELL+WY+++GL + E +V+ G L+ F++ + KR LPY+IDGVVYK+N
Sbjct: 252 ATHSELLDWYKELGLPVNSERAVVKGAEGLLAFFRAVGEKRDKLPYDIDGVVYKVNRRDE 311
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+T A
Sbjct: 312 QDALGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNA 371
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKII 426
TLHNE E+ RK+I+IGDTV+V R+G+VIP++ S++L RP+D++ F +P CP+C S I
Sbjct: 372 TLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSALLDRRPDDAREFVMPTHCPVCGSSIE 431
Query: 427 YIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY 486
+ IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV ++V T DL+
Sbjct: 432 RLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQHLVRTPADLF 490
Query: 487 KINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546
+ F L LDR ++K A N+L +++K+K TT +RFIYALGIRHVGE+TAK+LA +F +L
Sbjct: 491 NLGFSTLAELDRFADKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSL 550
Query: 547 ECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP------- 598
+ A+ E LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 551 NPIMDASVEALLEVNDVGPVVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQ 610
Query: 599 --------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKL 632
G KV +SK T+Y+V G + G KL KA +L
Sbjct: 611 GVLAGKTIVLTGTLPTLAREEAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEEL 670
Query: 633 NIKILDEKNFVKIVKGFS 650
I +LDE K+++G S
Sbjct: 671 GIPVLDEDGMRKLLEGQS 688
>gi|161524425|ref|YP_001579437.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616]
gi|189350820|ref|YP_001946448.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616]
gi|254781276|sp|A9AIK9.1|DNLJ_BURM1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|160341854|gb|ABX14940.1| DNA ligase, NAD-dependent [Burkholderia multivorans ATCC 17616]
gi|189334842|dbj|BAG43912.1| NAD-dependent DNA ligase [Burkholderia multivorans ATCC 17616]
Length = 691
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 304/679 (44%), Positives = 434/679 (63%), Gaps = 43/679 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ R L+ +L R N AYY+ D P + D +YD+L EL+++E +P+L+T DS TQ
Sbjct: 11 SQPDVRAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLESDHPDLVTPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--------KLTKNIEYIAE 123
VG V H M+SL+NGF+D+D++ F+KR+ + L +T +EY E
Sbjct: 71 VGGAVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKTTDLAGSVTDPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE+G QASTRGDG GE++T N+ I IPL L P +L+VR E
Sbjct: 131 LKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGDRVPAVLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + ++F NPRNAAAG LRQL+PKI + L FFA+G+G L GM
Sbjct: 191 VLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGM 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
MP +HS LL+WY+ +GL + E +V+ G L++F++K+ KR +LPY+IDGVVYK+N
Sbjct: 251 PMPDTHSALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEKRESLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q +LGF SRAPRFALA+KF ++EALTK+ AI +Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ ++L RP D+ F +P CP+C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFVMPTECPVCGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
KI + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 KIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L LDR + K A N+L +++K+K TT +RFIYALGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L+ + AT ++LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLDPIMNATIDELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPK 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y++ G + G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPNLTRDDAKEMLEAAGAKVAGSVSKKTDYVIAGAEAGSKLAKA 669
Query: 630 IKLNIKILDEKNFVKIVKG 648
L I +LDE ++++G
Sbjct: 670 EALGIPVLDEDGLHQLLEG 688
>gi|167570377|ref|ZP_02363251.1| DNA ligase, NAD-dependent [Burkholderia oklahomensis C6786]
Length = 691
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 305/681 (44%), Positives = 440/681 (64%), Gaps = 43/681 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ + R L+ EL R N AYY+ D P + D +YD+L EL+++E ++P+L+T +S TQ
Sbjct: 11 SQPAKRAAWLRAELERANYAYYVLDQPELPDAEYDRLFVELQQVEAEHPDLVTPESPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK--------LTKNIEYIAE 123
VG V H M+SL+NGFSDEDV+ F+KR+ + L +T +EY E
Sbjct: 71 VGGEVASGFTPVVHDTPMLSLNNGFSDEDVVAFDKRVADGLDKATDLAGTVTDPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G QASTRGDG GE++T NI + +PL L K+ P +L+VR E
Sbjct: 131 LKFDGLAISLRYEDGRFVQASTRGDGTTGEDVTRNIRTVRSVPLKLKGKHVPRVLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + G ++F NPRNAAAG LRQL+ KI ++ L FFA+G+G L G+
Sbjct: 191 VLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFFAYGIGVLDGV 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
+MP +H LL+WY+ +GL + E +V+ G L++F+ + +R +LPY+IDGVVYK+N
Sbjct: 251 DMPDTHGGLLDWYETLGLPVNRERAVVRGAAGLLDFFHAVGERRESLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q++LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ S++L RP D++ F +P CP C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSAVLDRRPADAREFVMPTACPECGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
+I + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 RIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L+ LDR + K A N++ ++ K+K TT SRFIYALGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFSTLVELDRFAEKSAQNLIDSLDKAKHTTLSRFIYALGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L+ + A+ E LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLDPIMDASIEALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPR 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y+V G G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKA 669
Query: 630 IKLNIKILDEKNFVKIVKGFS 650
+L I +LDE+ K+++G +
Sbjct: 670 EELGIPVLDEEGMHKLLEGHA 690
>gi|167586849|ref|ZP_02379237.1| DNA ligase, NAD-dependent [Burkholderia ubonensis Bu]
Length = 691
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 308/682 (45%), Positives = 437/682 (64%), Gaps = 45/682 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ R L+ +L R N AYY+ D P + D +YD+L EL++IE +PEL+T DS TQ
Sbjct: 11 SQPDARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFLELQQIEADHPELVTPDSPTQR 70
Query: 72 VG-LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--------KLTKNIEYIA 122
VG V G + VH M+SL+NGF DED++ F+KRI + L +T +EY
Sbjct: 71 VGGAVAGGFTPVVHDA-PMLSLNNGFEDEDIVAFDKRIADALDKAVDLAGSVTDPVEYAC 129
Query: 123 ELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRC 182
ELKFDG+A++LRYE G QASTRGDG GE++T N+ I +PL L + P +L+VR
Sbjct: 130 ELKFDGLAISLRYENGVFVQASTRGDGTTGEDVTQNVRTIRSLPLKLKGRNLPAVLDVRG 189
Query: 183 EVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG 242
EVL++K+DF +LN+ + G ++F NPRNAAAG LRQL+PKI + L FFA+G+G L G
Sbjct: 190 EVLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDG 249
Query: 243 MNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKIN 302
MP +HS LL+WY+ +GL + E +V+ G N L+ F++KI +R +LPY+IDGVVYK+N
Sbjct: 250 APMPDTHSALLDWYETLGLPVNRERAVVRGANGLLGFFRKIGEQRESLPYDIDGVVYKVN 309
Query: 303 CLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGIT 362
Q++LGF SRAPRFALA+KF ++EALT + AI++Q+GRTG ITPVA L+PV + G T
Sbjct: 310 RRDEQERLGFVSRAPRFALAHKFPAQEALTTLVAIDVQVGRTGAITPVARLEPVFVGGAT 369
Query: 363 ITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICN 422
+T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ ++L RP+ + F +P CP+C
Sbjct: 370 VTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGAVLDRRPDPAPEFVMPTECPVCG 429
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
S+I + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 430 SRIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTP 488
Query: 483 VDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY 542
DL+ + F L LDR + K A N+L +++K+K TT +RFIY LGIRHVGE+TAK+LA +
Sbjct: 489 ADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKH 548
Query: 543 FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP--- 598
F +L + AT E+LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 549 FGSLNPIMDATVEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAP 608
Query: 599 ------------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEK 628
G KV +SK T+Y+V G + G KL K
Sbjct: 609 KAPQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAK 668
Query: 629 AIKLNIKILDEKNFVKIVKGFS 650
A +L I +LDE ++++G +
Sbjct: 669 AEELGIPVLDEDGLHQLLEGHA 690
>gi|83720010|ref|YP_442546.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
gi|257138755|ref|ZP_05587017.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
gi|123753789|sp|Q2SX03.1|DNLJ_BURTA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|83653835|gb|ABC37898.1| DNA ligase, NAD-dependent [Burkholderia thailandensis E264]
Length = 691
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 303/676 (44%), Positives = 436/676 (64%), Gaps = 43/676 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L+ EL R N AYY+ D P + D +YD+L EL++IE ++P+L+T DS TQ VG
Sbjct: 16 RAAWLRAELERANYAYYVLDQPDLPDAEYDRLFAELQQIEAEHPDLVTPDSPTQRVGGEV 75
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK--------LTKNIEYIAELKFDG 128
V H M+SL+NGFSD+DV+ F+KR+ + L +T+ +EY ELKFDG
Sbjct: 76 ASGFTPVVHDTPMLSLNNGFSDDDVVAFDKRVADGLDKPTDLAGTVTEPVEYACELKFDG 135
Query: 129 IAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYK 188
+A++LRYE G QASTRGDG GE++T NI + IPL L K P +L+VR EVL+++
Sbjct: 136 LAISLRYENGRFVQASTRGDGTTGEDVTENIRTVRSIPLTLKGKRVPRMLDVRGEVLMFR 195
Query: 189 KDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSS 248
+DF +LN+ + G ++F NPRNAAAG LRQL+ KI ++ L FFA+G+G L G+ MP +
Sbjct: 196 RDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFFAYGIGVLDGVEMPDT 255
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
HS LL+WY+ +GL + E +V+ G L+EF+ + +R +LPY+IDGVVYK+N Q
Sbjct: 256 HSSLLDWYETLGLPVNRERAVVRGAAGLLEFFHSVGARRESLPYDIDGVVYKVNRRDEQD 315
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
+LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+T ATL
Sbjct: 316 RLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATL 375
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYI 428
HNE E+ RK+I+IGDTV+V R+G+VIP++ S++ RP D++ F +P CP C S++ +
Sbjct: 376 HNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSAVFDRRPADAREFVMPTECPECGSRVERL 435
Query: 429 ESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488
IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T DL+ +
Sbjct: 436 PDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPADLFNL 494
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
F L+ LDR + K A N++ +++K+K TT +RFIYALGIRHVGE+TAK+LA +F +L+
Sbjct: 495 GFSTLVELDRFAEKSAQNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDP 554
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP--------- 598
+ A+ ++LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 555 IMDASIDELLEVNDVGPIVAESIHQFFAEAHNRTVIEQLRAKGKVTWPEGPPAPRAPQGV 614
Query: 599 ------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNI 634
G KV +SK T+Y+V G G KL KA +L I
Sbjct: 615 LAGKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKAEELGI 674
Query: 635 KILDEKNFVKIVKGFS 650
+LDE K+++G +
Sbjct: 675 PVLDEAGMHKLLEGHA 690
>gi|187924439|ref|YP_001896081.1| NAD-dependent DNA ligase [Burkholderia phytofirmans PsJN]
gi|254781278|sp|B2T5K0.1|DNLJ_BURPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|187715633|gb|ACD16857.1| DNA ligase, NAD-dependent [Burkholderia phytofirmans PsJN]
Length = 688
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 309/676 (45%), Positives = 432/676 (63%), Gaps = 40/676 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S + R L+ EL R N AYY+ D P + D +YD+L EL+ IE ++P+L+ DS TQ
Sbjct: 12 SAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDKLFKELESIETEHPDLIVPDSPTQR 71
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN-----IEYIAELKF 126
VG + V H M+SL+NGF+DED++ F+KR+ + L + ++Y AELKF
Sbjct: 72 VGGEAASGFEPVVHDQPMLSLNNGFADEDIVAFDKRVGDALGKNASEPPVPVDYAAELKF 131
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+A++LRY G QASTRGDG GEN+T N+ I IPL L K P +L+VR EVL+
Sbjct: 132 DGLAISLRYVDGAFVQASTRGDGTTGENVTENVRTIRSIPLKLKGKRVPHVLDVRGEVLM 191
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
+K+DF +LN+ + K+F NPRNAAAG LRQL+ KI + L FFA+G+G L GM MP
Sbjct: 192 FKRDFERLNERQRAAEQKEFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLEGMEMP 251
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
++HSELL+WY+++GL + E +V+ G L+ F+ + KR LPY+IDGVVYK+N
Sbjct: 252 ATHSELLDWYKELGLPVNSERAVVQGAEGLLGFFHGVGEKREKLPYDIDGVVYKVNRRDE 311
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+T A
Sbjct: 312 QDALGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNA 371
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKII 426
TLHNE E+ RK+I+IGDTV+V R+G+VIP++ S++L RP+D++ F +P CP+C S I
Sbjct: 372 TLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSALLDRRPSDAREFVMPTQCPVCGSSIE 431
Query: 427 YIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY 486
+ IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T DL+
Sbjct: 432 RLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPADLF 490
Query: 487 KINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546
I F L LDR + K A N+L +++K+K TT +RFIYALGIRHVGE+TAK+LA +F +L
Sbjct: 491 NIGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSL 550
Query: 547 ECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP------- 598
+ + A+ E LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 551 DPIMDASVEALLEVNDVGPVVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPKAPQ 610
Query: 599 --------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKL 632
G KV +SK T+YLV G G KL KA +L
Sbjct: 611 GVLAGKTVVLTGTLPSLAREEAKEMLEAAGAKVAGSVSKKTDYLVAGADAGSKLAKAEEL 670
Query: 633 NIKILDEKNFVKIVKG 648
+ +LDE K+++G
Sbjct: 671 GVPVLDEDGMRKLLEG 686
>gi|254247879|ref|ZP_04941200.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184]
gi|124872655|gb|EAY64371.1| NAD-dependent DNA ligase [Burkholderia cenocepacia PC184]
Length = 691
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 305/679 (44%), Positives = 435/679 (64%), Gaps = 43/679 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ R L+ +L R N AYY+ D P + D +YD+L EL+++E +PEL+T DS TQ
Sbjct: 11 SQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVTPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--------KLTKNIEYIAE 123
VG V H M+SL+NGF+DED++ F+KR+ + L +T +EY E
Sbjct: 71 VGGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGSVTDPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G QA+TRGDG GE++T N+ I IPL L K+ P +L+VR E
Sbjct: 131 LKFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + ++F NPRNAAAG LRQL+ KI + L FFA+G+G L GM
Sbjct: 191 VLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGM 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
MP +HS LL+WY+ +GL + E +V+ G L++F++K+ KR +LPY+IDGVVYK+N
Sbjct: 251 PMPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q++LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ ++L RP D+ F +P CP+C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFVMPTECPVCGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
KI + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 KIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L LDR + K A N+L +++K+K TT +RFIY LGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L + A+ E+LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLTPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPK 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y+V G + G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKA 669
Query: 630 IKLNIKILDEKNFVKIVKG 648
+L I +LDE ++++G
Sbjct: 670 EELGIPVLDEDGLHQLLEG 688
>gi|107028796|ref|YP_625891.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054]
gi|105897960|gb|ABF80918.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia AU 1054]
Length = 746
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 304/679 (44%), Positives = 435/679 (64%), Gaps = 43/679 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ R L+ +L R N AYY+ D P + D +YD+L EL+++E +PEL+T DS TQ
Sbjct: 66 SQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVTPDSPTQR 125
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--------KLTKNIEYIAE 123
VG V H M+SL+NGF+DED++ F+KR+ + L +T +EY E
Sbjct: 126 VGGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGSVTDPVEYACE 185
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G QA+TRGDG GE++T N+ I IPL L K+ P +L+VR E
Sbjct: 186 LKFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGE 245
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + ++F NPRNAAAG LRQL+ KI + L FFA+G+G L GM
Sbjct: 246 VLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGM 305
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
MP +HS LL+WY+ +GL + E +V+ G L++F++K+ KR +LPY+IDGVVYK+N
Sbjct: 306 PMPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNR 365
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q++LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+
Sbjct: 366 RDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATV 425
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ ++L RP D+ F +P CP+C S
Sbjct: 426 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFVMPTECPVCGS 485
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
KI + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 486 KIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTPA 544
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L LDR + K A N++ +++K+K TT +RFIY LGIRHVGE+TAK+LA +F
Sbjct: 545 DLFNLGFATLAELDRFAEKSAQNLIDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHF 604
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L + A+ E+LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 605 GSLTPIMDASIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPK 664
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y+V G + G KL KA
Sbjct: 665 APQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKA 724
Query: 630 IKLNIKILDEKNFVKIVKG 648
+L I +LDE ++++G
Sbjct: 725 EELGIPVLDEDGLHQLLEG 743
>gi|221215451|ref|ZP_03588415.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD1]
gi|221164635|gb|EED97117.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD1]
Length = 691
Score = 633 bits (1632), Expect = e-178, Method: Compositional matrix adjust.
Identities = 304/679 (44%), Positives = 435/679 (64%), Gaps = 43/679 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ R L+ +L R N AYY+ D P + D +YD+L EL+++E +P+L+T DS TQ
Sbjct: 11 SQPDARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLESDHPDLVTPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--------KLTKNIEYIAE 123
VG V H M+SL+NGF+D+D++ F+KR+ + L +T +EY E
Sbjct: 71 VGGAVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKTTDLAGSVTDPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE+G QASTRGDG GE++T N+ I IPL L + P +L+VR E
Sbjct: 131 LKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGERVPAVLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + ++F NPRNAAAG LRQL+PKI + L FFA+G+G L GM
Sbjct: 191 VLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGM 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
MP +HS LL+WY+ +GL + E +V+ G L++F++K+ KR +LPY+IDGVVYK+N
Sbjct: 251 PMPDTHSALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEKRESLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q +LGF SRAPRFALA+KF ++EALTK+ AI +Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ ++L RP D+ F +P CP+C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFVMPTECPVCGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
KI + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 KIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L LDR + K A N+L +++K+K TT +RFIYALGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFATLAELDRFAEKSAQNLLDSLKKAKHTTLARFIYALGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L+ + AT ++LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLDPIMNATIDELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPK 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y++ G + G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPNLTRDDAKEMLEAAGAKVAGSVSKKTDYVIAGAEAGSKLAKA 669
Query: 630 IKLNIKILDEKNFVKIVKG 648
L I +LDE ++++G
Sbjct: 670 EALGIPVLDEDGLHQLLEG 688
>gi|91784125|ref|YP_559331.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400]
gi|123358676|sp|Q13XB0.1|DNLJ_BURXL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|91688079|gb|ABE31279.1| NAD-dependent DNA ligase [Burkholderia xenovorans LB400]
Length = 688
Score = 633 bits (1632), Expect = e-178, Method: Compositional matrix adjust.
Identities = 307/676 (45%), Positives = 436/676 (64%), Gaps = 40/676 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S + R L+ EL R N AYY+ D P + D +YD+L EL+ IE ++P+L+ DS TQ
Sbjct: 12 SAPAERAAWLRAELERANYAYYVLDQPDLPDAEYDRLFKELESIETEHPDLIVPDSPTQR 71
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN-----IEYIAELKF 126
VG + V H M+SL+NGF+DED++ F+KR+ + L + +EY AELKF
Sbjct: 72 VGGEAASGFEPVVHEQPMLSLNNGFADEDIVAFDKRVGDALGKNASEPPVPVEYAAELKF 131
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+A++LRY G QASTRGDG GEN+T N+ I IPL L K P +L+VR EVL+
Sbjct: 132 DGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLRLKGKRVPHVLDVRGEVLM 191
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
+K+DF +LN+ + K+F NPRNAAAG LRQL+ KI + L FF++G+G L GM+MP
Sbjct: 192 FKRDFERLNERQRAAEQKEFANPRNAAAGSLRQLDSKITAQRPLSFFSYGIGVLEGMDMP 251
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
++HSELL+WY+++GL + GE +V+ G L+ F+ + KR LPY+IDGVVYK+N
Sbjct: 252 ATHSELLDWYKELGLPVNGERAVVHGAEGLLGFFHAVGEKREKLPYDIDGVVYKVNRRDE 311
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q+ LGF SRAPRFALA+KF ++EALT++ AI++Q+GRTG +TPVA L+PV + G T+T A
Sbjct: 312 QEALGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAVTPVARLEPVFVGGATVTNA 371
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKII 426
TLHNE E+ RK+I+IGDTV+V R+G+VIP++ S++L RP+D++ F +P CP+C S I
Sbjct: 372 TLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSALLDRRPDDAREFVMPTHCPVCGSNIE 431
Query: 427 YIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY 486
+ IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T DL+
Sbjct: 432 RLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPADLF 490
Query: 487 KINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546
+ F L LDR + K A N+L +++K+K TT +RFIYALGIRHVGE+TAK+LA +F +L
Sbjct: 491 NLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSL 550
Query: 547 ECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP------- 598
+ + A+ E LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 551 DPIMDASVEALLEVNDVGPVVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPKAPQ 610
Query: 599 --------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKL 632
G KV +SK T+Y+V G + G KL KA +L
Sbjct: 611 GVLAGKTVVLTGTLPSLAREEAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEEL 670
Query: 633 NIKILDEKNFVKIVKG 648
I +LDE K+++G
Sbjct: 671 GIPVLDEDGMRKLLEG 686
>gi|170703080|ref|ZP_02893902.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10]
gi|170132009|gb|EDT00515.1| DNA ligase, NAD-dependent [Burkholderia ambifaria IOP40-10]
Length = 691
Score = 632 bits (1631), Expect = e-178, Method: Compositional matrix adjust.
Identities = 308/680 (45%), Positives = 436/680 (64%), Gaps = 45/680 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ R L+ +L R N AYY+ D P + D +YD+L EL+++E +P+L+T DS TQ
Sbjct: 11 SQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPDLVTPDSPTQR 70
Query: 72 VG-LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--------KLTKNIEYIA 122
VG V G + VH M+SL+NGF+DED+ F+KR+ + L +T +EY
Sbjct: 71 VGGEVAGGFTPVVHDA-PMLSLNNGFADEDIAAFDKRVADALGKTTDLAGSVTDPVEYAC 129
Query: 123 ELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRC 182
ELKFDG+A++LRYE+G QASTRGDG GE++T N+ I IPL L + P LL+VR
Sbjct: 130 ELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVRG 189
Query: 183 EVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG 242
EVL++K+DF +LN+ + ++F NPRNAAAG LRQL+PKI + L FFA+G+G L G
Sbjct: 190 EVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDG 249
Query: 243 MNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKIN 302
M MP +HS LL+WY+ GL + E +V+ G + L+ F++K+ KR +LPY+IDGVVYK+N
Sbjct: 250 MPMPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEKRESLPYDIDGVVYKVN 309
Query: 303 CLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGIT 362
Q +LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T
Sbjct: 310 RRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGAT 369
Query: 363 ITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICN 422
+T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ ++L RP+D+ F +P CP+C
Sbjct: 370 VTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPDDAAEFVMPTECPVCG 429
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
SKI + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 430 SKIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTP 488
Query: 483 VDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY 542
DL+ + F L LDR + K A N+L +++K+K TT +RFIY LGIRHVGE+TAK+LA +
Sbjct: 489 ADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKH 548
Query: 543 FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP--- 598
F +L + A+ E+LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 549 FGSLTPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWAEGPPAP 608
Query: 599 ------------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEK 628
G KV +SK T+Y+V G G KL K
Sbjct: 609 KAPQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAK 668
Query: 629 AIKLNIKILDEKNFVKIVKG 648
A +L I +LDE ++++G
Sbjct: 669 AEELGIPVLDEDELHQLLEG 688
>gi|116690045|ref|YP_835668.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424]
gi|166215562|sp|A0K8E8.1|DNLJ_BURCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|166215593|sp|Q1BHI7.2|DNLJ_BURCA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|116648134|gb|ABK08775.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia HI2424]
Length = 691
Score = 632 bits (1631), Expect = e-178, Method: Compositional matrix adjust.
Identities = 304/679 (44%), Positives = 435/679 (64%), Gaps = 43/679 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ R L+ +L R N AYY+ D P + D +YD+L EL+++E +PEL+T DS TQ
Sbjct: 11 SQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVTPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--------KLTKNIEYIAE 123
VG V H M+SL+NGF+DED++ F+KR+ + L +T +EY E
Sbjct: 71 VGGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGSVTDPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G QA+TRGDG GE++T N+ I IPL L K+ P +L+VR E
Sbjct: 131 LKFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + ++F NPRNAAAG LRQL+ KI + L FFA+G+G L GM
Sbjct: 191 VLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGM 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
MP +HS LL+WY+ +GL + E +V+ G L++F++K+ KR +LPY+IDGVVYK+N
Sbjct: 251 PMPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q++LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ ++L RP D+ F +P CP+C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFVMPTECPVCGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
KI + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 KIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L LDR + K A N++ +++K+K TT +RFIY LGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFATLAELDRFAEKSAQNLIDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L + A+ E+LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLTPIMDASIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPK 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y+V G + G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKA 669
Query: 630 IKLNIKILDEKNFVKIVKG 648
+L I +LDE ++++G
Sbjct: 670 EELGIPVLDEDGLHQLLEG 688
>gi|421467298|ref|ZP_15915932.1| DNA ligase (NAD+) [Burkholderia multivorans ATCC BAA-247]
gi|400233821|gb|EJO63331.1| DNA ligase (NAD+) [Burkholderia multivorans ATCC BAA-247]
Length = 691
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 304/679 (44%), Positives = 434/679 (63%), Gaps = 43/679 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ R L+ +L R N AYY+ D P + D +YD+L EL+++E +P+L+T DS TQ
Sbjct: 11 SQPDARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLESDHPDLVTPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--------KLTKNIEYIAE 123
VG V H M+SL+NGF+D+D++ F+KR+ + L +T +EY E
Sbjct: 71 VGGAVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKTTDLAGSVTDPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE+G QASTRGDG GE++T N+ I IPL L P +L+VR E
Sbjct: 131 LKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGDRVPAVLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + ++F NPRNAAAG LRQL+PKI + L FFA+G+G L GM
Sbjct: 191 VLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGM 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
MP +HS LL+WY+ +GL + E +V+ G L++F++K+ KR +LPY+IDGVVYK+N
Sbjct: 251 PMPDTHSALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEKRESLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q +LGF SRAPRFALA+KF ++EALTK+ AI +Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ ++L RP D+ F +P CP+C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFVMPTECPVCGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
KI + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 KIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L LDR + K A N+L +++K+K TT +RFIYALGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L+ + AT ++LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLDPIMNATIDELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPK 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y++ G + G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPNLTRDDAKEMLEAAGAKVAGSVSKKTDYVIAGVEAGSKLAKA 669
Query: 630 IKLNIKILDEKNFVKIVKG 648
L I +LDE ++++G
Sbjct: 670 EALGIPVLDEDGLHQLLEG 688
>gi|115352108|ref|YP_773947.1| DNA ligase [Burkholderia ambifaria AMMD]
gi|122322835|sp|Q0BE10.1|DNLJ_BURCM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|115282096|gb|ABI87613.1| DNA ligase, NAD-dependent [Burkholderia ambifaria AMMD]
Length = 691
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 307/680 (45%), Positives = 436/680 (64%), Gaps = 45/680 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ R L+ +L R N AYY+ D P + D +YD+L EL+++E +P+L+T DS TQ
Sbjct: 11 SQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPDLVTPDSPTQR 70
Query: 72 VG-LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--------KLTKNIEYIA 122
VG V G + VH M+SL+NGF+DED+ F+KR+ + L +T +EY
Sbjct: 71 VGGEVAGGFTPVVHDA-PMLSLNNGFADEDIAAFDKRVADALGKTTDLAGSVTDPVEYAC 129
Query: 123 ELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRC 182
ELKFDG+A++LRYE+G QASTRGDG GE++T N+ I IPL L + P LL+VR
Sbjct: 130 ELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVRG 189
Query: 183 EVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG 242
EVL++K+DF +LN+ + ++F NPRNAAAG LRQL+PKI + L FFA+G+G L G
Sbjct: 190 EVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDG 249
Query: 243 MNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKIN 302
M MP +HS LL+WY+ GL + E +V+ G + L+ F++K+ KR +LPY+IDGVVYK+N
Sbjct: 250 MPMPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEKRESLPYDIDGVVYKVN 309
Query: 303 CLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGIT 362
Q +LGF SRAPRFALA+KF ++EALT++ AI++Q+GRTG ITPVA L+PV + G T
Sbjct: 310 RRDEQDRLGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEPVFVGGAT 369
Query: 363 ITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICN 422
+T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ ++L RP+D+ F +P CP+C
Sbjct: 370 VTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPDDAAEFVMPTECPVCG 429
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
SKI + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 430 SKIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTP 488
Query: 483 VDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY 542
DL+ + F L LDR + K A N+L +++K+K TT +RFIY LGIRHVGE+TAK+LA +
Sbjct: 489 ADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKH 548
Query: 543 FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP--- 598
F +L + A+ E+LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 549 FGSLTPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWAEGPPAP 608
Query: 599 ------------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEK 628
G KV +SK T+Y+V G G KL K
Sbjct: 609 RAPQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAK 668
Query: 629 AIKLNIKILDEKNFVKIVKG 648
A +L I +LDE ++++G
Sbjct: 669 AEELGIPVLDEDGLHQLLEG 688
>gi|53723744|ref|YP_103200.1| NAD-dependent DNA ligase [Burkholderia mallei ATCC 23344]
gi|67639492|ref|ZP_00438344.1| DNA ligase, NAD-dependent [Burkholderia mallei GB8 horse 4]
gi|121600643|ref|YP_993378.1| NAD-dependent DNA ligase [Burkholderia mallei SAVP1]
gi|124385135|ref|YP_001029185.1| NAD-dependent DNA ligase [Burkholderia mallei NCTC 10229]
gi|126450807|ref|YP_001080885.1| NAD-dependent DNA ligase [Burkholderia mallei NCTC 10247]
gi|167004074|ref|ZP_02269848.1| DNA ligase, NAD-dependent [Burkholderia mallei PRL-20]
gi|254178005|ref|ZP_04884660.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 10399]
gi|254206491|ref|ZP_04912843.1| DNA ligase, NAD-dependent [Burkholderia mallei JHU]
gi|254358100|ref|ZP_04974373.1| DNA ligase, NAD-dependent [Burkholderia mallei 2002721280]
gi|386861323|ref|YP_006274272.1| NAD-dependent DNA ligase [Burkholderia pseudomallei 1026b]
gi|418538481|ref|ZP_13104090.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1026a]
gi|81604820|sp|Q62JB9.1|DNLJ_BURMA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|166215563|sp|A3MKU9.1|DNLJ_BURM7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|166215564|sp|A2SB66.1|DNLJ_BURM9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|166215565|sp|A1V575.1|DNLJ_BURMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|52427167|gb|AAU47760.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 23344]
gi|121229453|gb|ABM51971.1| DNA ligase, NAD-dependent [Burkholderia mallei SAVP1]
gi|124293155|gb|ABN02424.1| DNA ligase (NAD(+)) [Burkholderia mallei NCTC 10229]
gi|126243677|gb|ABO06770.1| DNA ligase (NAD(+)) [Burkholderia mallei NCTC 10247]
gi|147753934|gb|EDK60999.1| DNA ligase, NAD-dependent [Burkholderia mallei JHU]
gi|148027227|gb|EDK85248.1| DNA ligase, NAD-dependent [Burkholderia mallei 2002721280]
gi|160699044|gb|EDP89014.1| DNA ligase, NAD-dependent [Burkholderia mallei ATCC 10399]
gi|238520039|gb|EEP83503.1| DNA ligase, NAD-dependent [Burkholderia mallei GB8 horse 4]
gi|243060513|gb|EES42699.1| DNA ligase, NAD-dependent [Burkholderia mallei PRL-20]
gi|385347767|gb|EIF54417.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1026a]
gi|385658451|gb|AFI65874.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1026b]
Length = 691
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 307/681 (45%), Positives = 436/681 (64%), Gaps = 43/681 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ + R L+ EL R N AYY+ D P + D +YD+L EL++IE ++P+L+T DS TQ
Sbjct: 11 SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLVTPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK--------LTKNIEYIAE 123
VG V H M+SL+NGF+DEDVI F+KR+ + L +T+ +EY E
Sbjct: 71 VGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGTVTEPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G QASTRGDG GE++T NI I IPL L K P +L+VR E
Sbjct: 131 LKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKRIPRMLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + G ++F NPRNAAAG LRQL+ KI ++ L FFA+G+G L G
Sbjct: 191 VLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFFAYGIGVLDGA 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
+MP +HS LL+WY+ +GL + E +V+ G L+ F+ + +R +LPY+IDGVVYK+N
Sbjct: 251 DMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q +LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQDRLGFVSRAPRFALAHKFPAQEALTKLTAIDVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ S++L RP D++ F +P CP C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSAVLDRRPADAQEFVMPTECPECGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
+I + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 RIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L+ LDR + K A N++ +++K+K TT +RFIYALGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFSTLVALDRFAEKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L+ + A + LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLDPIMDAPIDALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPR 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y+V G G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKA 669
Query: 630 IKLNIKILDEKNFVKIVKGFS 650
+L I +LDE +++G +
Sbjct: 670 EELGIPVLDEAGMHTLLEGHA 690
>gi|170733380|ref|YP_001765327.1| NAD-dependent DNA ligase [Burkholderia cenocepacia MC0-3]
gi|254781274|sp|B1JUF5.1|DNLJ_BURCC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|169816622|gb|ACA91205.1| DNA ligase, NAD-dependent [Burkholderia cenocepacia MC0-3]
Length = 691
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 304/679 (44%), Positives = 435/679 (64%), Gaps = 43/679 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ R L+ +L R N AYY+ D P + D +YD+L EL+++E +PEL+T DS TQ
Sbjct: 11 SQPDARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVTPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--------KLTKNIEYIAE 123
VG V H M+SL+NGF+DED++ F+KR+ + L +T +EY E
Sbjct: 71 VGGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKTTDLAGSVTDPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G QA+TRGDG GE++T N+ I IPL L K+ P +L+VR E
Sbjct: 131 LKFDGLAISLRYEQGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + ++F NPRNAAAG LRQL+ KI + L FFA+G+G L GM
Sbjct: 191 VLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGM 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
MP +HS LL+WY+ +GL + E +V+ G L++F++K+ KR +LPY+IDGVVYK+N
Sbjct: 251 PMPDTHSALLDWYESLGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q++LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ ++L RP D+ F +P CP+C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFVMPTECPVCGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
KI + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 KIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L LDR + K A N++ +++K+K TT +RFIY LGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFATLAELDRFAEKSAQNLIDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L + A+ E+LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLTPIMDASIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPK 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y+V G + G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKA 669
Query: 630 IKLNIKILDEKNFVKIVKG 648
+L I +LDE ++++G
Sbjct: 670 EELGIPVLDEDGLHQLLEG 688
>gi|172060972|ref|YP_001808624.1| NAD-dependent DNA ligase [Burkholderia ambifaria MC40-6]
gi|254781273|sp|B1YSH2.1|DNLJ_BURA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|171993489|gb|ACB64408.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MC40-6]
Length = 691
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 307/680 (45%), Positives = 436/680 (64%), Gaps = 45/680 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ R L+ +L R N AYY+ D P + D +YD+L EL+++E +P+L+T DS TQ
Sbjct: 11 SQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPDLVTPDSPTQR 70
Query: 72 VG-LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--------KLTKNIEYIA 122
VG V G + VH M+SL+NGF+DED+ F+KR+ + L +T +EY
Sbjct: 71 VGGEVAGGFTPVVHDA-PMLSLNNGFADEDIAAFDKRVADALGKTTDLAGSVTDPVEYAC 129
Query: 123 ELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRC 182
ELKFDG+A++LRYE+G QASTRGDG GE++T N+ I IPL L + P LL+VR
Sbjct: 130 ELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVRG 189
Query: 183 EVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG 242
EVL++K+DF +LN+ + ++F NPRNAAAG LRQL+PKI + L FFA+G+G L G
Sbjct: 190 EVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDG 249
Query: 243 MNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKIN 302
M MP +HS LL+WY+ GL + E +V+ G + L+ F++K+ KR +LPY+IDGVVYK+N
Sbjct: 250 MPMPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEKRESLPYDIDGVVYKVN 309
Query: 303 CLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGIT 362
Q +LGF SRAPRFALA+KF ++EALT++ AI++Q+GRTG ITPVA L+PV + G T
Sbjct: 310 RRDEQDRLGFVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEPVFVGGAT 369
Query: 363 ITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICN 422
+T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ ++L RP+D+ F +P CP+C
Sbjct: 370 VTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLERRPDDAAEFVMPTECPVCG 429
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
SKI + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 430 SKIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTP 488
Query: 483 VDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY 542
DL+ + F L LDR + K A N+L +++K+K TT +RFIY LGIRHVGE+TAK+LA +
Sbjct: 489 ADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKH 548
Query: 543 FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP--- 598
F +L + A+ E+LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 549 FGSLTPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAP 608
Query: 599 ------------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEK 628
G KV +SK T+Y+V G G KL K
Sbjct: 609 KAPQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAK 668
Query: 629 AIKLNIKILDEKNFVKIVKG 648
A +L I +LDE ++++G
Sbjct: 669 AEELGIPVLDEDGLHQLLEG 688
>gi|402566193|ref|YP_006615538.1| NAD-dependent DNA ligase [Burkholderia cepacia GG4]
gi|402247390|gb|AFQ47844.1| NAD-dependent DNA ligase [Burkholderia cepacia GG4]
Length = 691
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 307/679 (45%), Positives = 434/679 (63%), Gaps = 43/679 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ RV L+ +L R N AYY+ D P + D +YD+L EL+++E +PEL+T DS TQ
Sbjct: 11 SQPDARVAWLRDQLERANHAYYVLDQPDLPDAEYDRLFGELQQLETDHPELVTPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK--------LTKNIEYIAE 123
VG V H M+SL+NGF+DED+ F+KRI + L +T +EY E
Sbjct: 71 VGGEVANGFTPVVHDAPMLSLNNGFADEDIAAFDKRIADALDKTIDLAGSVTDPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G QASTRGDG GE++T N+ I IPL L + P +L+VR E
Sbjct: 131 LKFDGLAISLRYEQGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPAVLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + ++F NPRNAAAG LRQL+PKI + L FFA+G+G L GM
Sbjct: 191 VLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGMLDGM 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
MP +HS LL+WY+ +GL + E +++ G L+ F++K+ KR +LPY+IDGVVYK+N
Sbjct: 251 PMPDTHSALLDWYESLGLPVNRERAIVHGAEGLLGFFRKVGEKRESLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q +LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ ++L RP+D+ F +P CP+C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPDDAAEFVMPTECPVCGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
KI + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 KIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L LDR + K A N+L +++K+K TT +RFIY LGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L + A+ E+LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLTPIMDASIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPK 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y+V G + G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLVKA 669
Query: 630 IKLNIKILDEKNFVKIVKG 648
+L I +LDE ++++G
Sbjct: 670 EELGIPVLDEDGLHQLLEG 688
>gi|167563194|ref|ZP_02356110.1| DNA ligase, NAD-dependent [Burkholderia oklahomensis EO147]
Length = 691
Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust.
Identities = 304/681 (44%), Positives = 439/681 (64%), Gaps = 43/681 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ + R L+ EL R N AYY+ D P + D +YD+L EL+++E ++P+L+T +S TQ
Sbjct: 11 SQPAKRAAWLRAELERANYAYYVLDQPELPDAEYDRLFVELQQVEAEHPDLVTPESPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK--------LTKNIEYIAE 123
VG V H M+SL+NGFSDEDV+ F+KR+ + L +T +EY E
Sbjct: 71 VGGEVASGFTPVVHDTPMLSLNNGFSDEDVVAFDKRVADGLDKATDLAGTVTDPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G QASTRGDG GE++T NI + +PL L K+ P +L+VR E
Sbjct: 131 LKFDGLAISLRYEDGRFVQASTRGDGTTGEDVTRNIRTVRSVPLKLKGKHVPRVLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + G ++F NPRNAAAG LRQL+ KI ++ L FFA+G+G L G+
Sbjct: 191 VLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFFAYGIGVLDGV 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
+MP +H LL+WY+ +GL + E +V+ G L++F+ + +R +LPY+IDGVVYK+N
Sbjct: 251 DMPDTHGGLLDWYETLGLPVNRERAVVRGAAGLLDFFHAVGERRESLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q++LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ S++L RP D++ F +P CP C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSAVLDRRPADAREFVMPTACPECGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
I + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 GIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L+ LDR + K A N++ ++ K+K TT +RFIYALGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFSTLVELDRFAEKSAQNLIDSLDKAKHTTLARFIYALGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L+ + A+ E LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLDPIMDASIEALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGRVTWPEGPPAPR 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y+V G G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKA 669
Query: 630 IKLNIKILDEKNFVKIVKGFS 650
+L I +LDE+ K+++G +
Sbjct: 670 EELGIPVLDEEGMHKLLEGHA 690
>gi|170692136|ref|ZP_02883299.1| DNA ligase, NAD-dependent [Burkholderia graminis C4D1M]
gi|170142566|gb|EDT10731.1| DNA ligase, NAD-dependent [Burkholderia graminis C4D1M]
Length = 693
Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust.
Identities = 307/675 (45%), Positives = 438/675 (64%), Gaps = 40/675 (5%)
Query: 15 SFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGL 74
+ R L+ EL R N AYY+ D P + D +YD+L EL+ IE ++P+L+ DS TQ VG
Sbjct: 20 AARAEWLRAELERANYAYYVLDQPDLPDAEYDKLFKELESIEAEHPDLIVPDSPTQRVGG 79
Query: 75 VGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-----KLTKNIEYIAELKFDGI 129
+ V H M+SL+NGF+DED+I F+KR+ + L + ++Y ELKFDG+
Sbjct: 80 EAASGFEPVVHDQPMLSLNNGFADEDIIAFDKRVGDALGNNAKEPPVPVDYATELKFDGL 139
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
A++LRY G QA+TRGDG GEN+T NI + IPL L K P +L+VR EVL++K+
Sbjct: 140 AISLRYVDGVFVQAATRGDGATGENVTENIRTVRSIPLRLKGKRVPHILDVRGEVLMFKR 199
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
DF +LN+ + G K+F NPRNAAAG LRQL+PKI + L FFA+G+G L G+ MP++H
Sbjct: 200 DFERLNERQRAAGHKEFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGIEMPATH 259
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
SELL+WY+++GL + E +V+ G L+ F+ + KR LPY+IDGVVYK+N Q+
Sbjct: 260 SELLDWYKELGLPVNSERAVVKGAEGLLAFFHAVGEKRDKLPYDIDGVVYKVNRRDEQEA 319
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+T ATLH
Sbjct: 320 LGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLH 379
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
NE E+ RK+I+IGDTV+V R+G+VIP++ S+++ RP+D++ F +P CP+C S I +
Sbjct: 380 NEDEVRRKDIRIGDTVIVRRAGDVIPEVVSALIDRRPDDAREFVMPTHCPVCGSNIERLP 439
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T DL+ +
Sbjct: 440 DEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPADLFNLG 498
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
F L +LDR ++K A N+L +++K++ TT SRFIYALGIRHVGE+TAK+LA +F +L+ +
Sbjct: 499 FSTLAQLDRFADKSAQNLLDSLEKARHTTLSRFIYALGIRHVGESTAKDLAKHFGSLDPI 558
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---------- 598
+A+ E LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 559 MEASVEALLEVNDVGPVVAESIHQFFAEEHNRTVIEQLRAHGKVTWPEGPPAPRAPQGVL 618
Query: 599 -----------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIK 635
G KV +SK T+Y+V G + G KL KA +L I
Sbjct: 619 AGKTIVLTGTLPNLAREEAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLVKAEELGIP 678
Query: 636 ILDEKNFVKIVKGFS 650
+LDE K+++G S
Sbjct: 679 VLDEDGMRKLLEGQS 693
>gi|421870305|ref|ZP_16301940.1| DNA ligase [Burkholderia cenocepacia H111]
gi|358069831|emb|CCE52818.1| DNA ligase [Burkholderia cenocepacia H111]
Length = 691
Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust.
Identities = 305/679 (44%), Positives = 434/679 (63%), Gaps = 43/679 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ R L+ +L R N AYY+ D P + D +YD+L EL+++E +PEL+T DS TQ
Sbjct: 11 SQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVTPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--------KLTKNIEYIAE 123
VG V H M+SL+NGF+DED++ F+KR+ + L +T +EY E
Sbjct: 71 VGGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKATDLAGSVTDPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G QA+TRGDG GE++T N+ I IPL L K+ P +L+VR E
Sbjct: 131 LKFDGLAISLRYENGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + ++F NPRNAAAG LRQL+ KI + L FFA+G+G L GM
Sbjct: 191 VLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGM 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
MP +HS LL+WY+ GL + E +V+ G L++F++K+ KR +LPY+IDGVVYK+N
Sbjct: 251 PMPDTHSALLDWYEAFGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q++LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ ++L RP D+ F +P CP+C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFVMPTECPVCGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
KI + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 KIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L LDR + K A N+L +++K+K TT +RFIY LGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L + A+ E+LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLTPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPK 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y+V G + G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKA 669
Query: 630 IKLNIKILDEKNFVKIVKG 648
+L I +LDE ++++G
Sbjct: 670 EELGIPVLDEDGLHQLLEG 688
>gi|295676829|ref|YP_003605353.1| NAD-dependent DNA ligase [Burkholderia sp. CCGE1002]
gi|295436672|gb|ADG15842.1| DNA ligase, NAD-dependent [Burkholderia sp. CCGE1002]
Length = 687
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 308/676 (45%), Positives = 434/676 (64%), Gaps = 40/676 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S + R L+ EL N AYY+ D P + D +YD+L EL++IE ++P+L+ DS TQ
Sbjct: 12 SAPAERAAWLRAELEHANYAYYVLDQPDLPDAEYDKLFKELERIEAEHPDLIVPDSPTQR 71
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-----KLTKNIEYIAELKF 126
VG + V H M+SL+NGF+DED++ F+KRI + L + ++Y AELKF
Sbjct: 72 VGGEAASGFEPVVHDQPMLSLNNGFADEDIVAFDKRIGDALGNNASEPPVPVDYAAELKF 131
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+A++LRY G QASTRGDG GEN+T N+ I IPL L K P +L+VR EVL+
Sbjct: 132 DGLAISLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLKLKGKRVPHVLDVRGEVLM 191
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
+K+DF +LN+ + G ++F NPRNAAAG LRQL+ KI + L FFA+G+G L G+ MP
Sbjct: 192 FKRDFERLNERQRAAGQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGIEMP 251
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
+HSELL+WY+++GL + GE +V+ G L+ F+ + KR LPY+IDGVVYK+N
Sbjct: 252 PTHSELLDWYKEMGLPVNGERAVVQGAKGLLGFFHAVGEKRDRLPYDIDGVVYKVNRRDE 311
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q +LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+T A
Sbjct: 312 QDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNA 371
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKII 426
TLHNE E+ RK+I+IGDTV+V R+G+VIP++ S++L RP D++ F +P CP+C S I
Sbjct: 372 TLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSALLDRRPTDAREFVMPTQCPVCGSAIE 431
Query: 427 YIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY 486
+ IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T DL+
Sbjct: 432 RLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPADLF 490
Query: 487 KINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546
+ F L LDR ++K A N+L +++K+K TT +RFIYALGIRHVGE+TAK+LA +F +L
Sbjct: 491 NLGFATLAELDRFADKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSL 550
Query: 547 ECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP------- 598
+ + A+ E LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 551 DPIMDASLEALLEVNDVGPVVAESIHQFFAEDHNRTVIEQLRAPGRVTWPEGPPAPKAPQ 610
Query: 599 --------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKL 632
G KV +SK T+Y+V G G KL KA +L
Sbjct: 611 GVLAGQTVVLTGTLPNLSREDAKEMLEAAGAKVAGSVSKKTSYVVAGADAGSKLAKAEEL 670
Query: 633 NIKILDEKNFVKIVKG 648
I +LDE K+++G
Sbjct: 671 GIPVLDEDGMRKLLEG 686
>gi|126441747|ref|YP_001059474.1| NAD-dependent DNA ligase [Burkholderia pseudomallei 668]
gi|166215567|sp|A3NAV3.1|DNLJ_BURP6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|126221240|gb|ABN84746.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 668]
Length = 691
Score = 631 bits (1627), Expect = e-178, Method: Compositional matrix adjust.
Identities = 307/681 (45%), Positives = 436/681 (64%), Gaps = 43/681 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ + R L+ EL R N AYY+ D P + D +YD+L EL++IE ++P+L+T DS TQ
Sbjct: 11 SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLVTPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK--------LTKNIEYIAE 123
VG V H M+SL+NGF+DEDVI F+KR+ + L +T+ +EY E
Sbjct: 71 VGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGTVTEPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G QASTRGDG GE++T NI I IPL L K P +L+VR E
Sbjct: 131 LKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKRLPRMLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + G ++F NPRNAAAG LRQL+ KI ++ L FFA+G+G L G
Sbjct: 191 VLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFFAYGIGVLDGA 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
+MP +HS LL+WY+ +GL + E +V+ G L+ F+ + +R +LPY+IDGVVYK+N
Sbjct: 251 DMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q +LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ S++L RP D++ F +P CP C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSAVLDRRPADAQEFVMPTECPECGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
+I + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 RIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L+ LDR + K A N++ +++K+K TT +RFIYALGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFSTLVALDRFAEKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L+ + A + LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLDPIMDAPIDALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPR 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y+V G G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKA 669
Query: 630 IKLNIKILDEKNFVKIVKGFS 650
+L I +LDE +++G +
Sbjct: 670 EELGIPVLDEAGMHTLLEGHA 690
>gi|126453906|ref|YP_001066758.1| NAD-dependent DNA ligase [Burkholderia pseudomallei 1106a]
gi|134277579|ref|ZP_01764294.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 305]
gi|167739178|ref|ZP_02411952.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 14]
gi|167824768|ref|ZP_02456239.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 9]
gi|167846299|ref|ZP_02471807.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei B7210]
gi|167894881|ref|ZP_02482283.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 7894]
gi|167903270|ref|ZP_02490475.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei NCTC 13177]
gi|167919520|ref|ZP_02506611.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei BCC215]
gi|217421846|ref|ZP_03453350.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 576]
gi|226198948|ref|ZP_03794511.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pakistan 9]
gi|237812814|ref|YP_002897265.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei MSHR346]
gi|242317106|ref|ZP_04816122.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106b]
gi|254179316|ref|ZP_04885915.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1655]
gi|254198094|ref|ZP_04904516.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei S13]
gi|403519187|ref|YP_006653321.1| NAD-dependent DNA ligase [Burkholderia pseudomallei BPC006]
gi|418544854|ref|ZP_13110124.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1258a]
gi|418551656|ref|ZP_13116564.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1258b]
gi|166215566|sp|A3NWN7.1|DNLJ_BURP0 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|126227548|gb|ABN91088.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106a]
gi|134251229|gb|EBA51308.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 305]
gi|169654835|gb|EDS87528.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei S13]
gi|184209856|gb|EDU06899.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1655]
gi|217395588|gb|EEC35606.1| DNA ligase (NAD(+)) [Burkholderia pseudomallei 576]
gi|225929048|gb|EEH25072.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pakistan 9]
gi|237506455|gb|ACQ98773.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei MSHR346]
gi|242140345|gb|EES26747.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1106b]
gi|385347209|gb|EIF53872.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1258b]
gi|385347882|gb|EIF54528.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1258a]
gi|403074830|gb|AFR16410.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei BPC006]
Length = 691
Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust.
Identities = 307/681 (45%), Positives = 436/681 (64%), Gaps = 43/681 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ + R L+ EL R N AYY+ D P + D +YD+L EL++IE ++P+L+T DS TQ
Sbjct: 11 SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLVTPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK--------LTKNIEYIAE 123
VG V H M+SL+NGF+DEDVI F+KR+ + L +T+ +EY E
Sbjct: 71 VGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGTVTEPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G QASTRGDG GE++T NI I IPL L K P +L+VR E
Sbjct: 131 LKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKRIPRMLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + G ++F NPRNAAAG LRQL+ KI ++ L FFA+G+G L G
Sbjct: 191 VLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFFAYGIGVLDGA 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
+MP +HS LL+WY+ +GL + E +V+ G L+ F+ + +R +LPY+IDGVVYK+N
Sbjct: 251 DMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q +LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ S++L RP D++ F +P CP C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSAVLDRRPADAQEFVMPTECPECGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
+I + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 RIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L+ LDR + K A N++ +++K+K TT +RFIYALGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFSTLVALDRFAEKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L+ + A + LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLDPIMDAPIDALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPR 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y+V G G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKA 669
Query: 630 IKLNIKILDEKNFVKIVKGFS 650
+L I +LDE +++G +
Sbjct: 670 EELGIPVLDEAGMHTLLEGHA 690
>gi|206560458|ref|YP_002231222.1| DNA ligase [Burkholderia cenocepacia J2315]
gi|444359385|ref|ZP_21160703.1| DNA ligase (NAD+) [Burkholderia cenocepacia BC7]
gi|444367479|ref|ZP_21167421.1| DNA ligase (NAD+) [Burkholderia cenocepacia K56-2Valvano]
gi|254781275|sp|B4ECN6.1|DNLJ_BURCJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|198036499|emb|CAR52396.1| DNA ligase [Burkholderia cenocepacia J2315]
gi|443602144|gb|ELT70239.1| DNA ligase (NAD+) [Burkholderia cenocepacia BC7]
gi|443602820|gb|ELT70873.1| DNA ligase (NAD+) [Burkholderia cenocepacia K56-2Valvano]
Length = 691
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 304/679 (44%), Positives = 434/679 (63%), Gaps = 43/679 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ R L+ +L R N AYY+ D P + D +YD+L EL+++E +PEL+T DS TQ
Sbjct: 11 SQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVTPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--------KLTKNIEYIAE 123
VG V H M+SL+NGF+DED++ F+KR+ + L +T +EY E
Sbjct: 71 VGGEAAGGFTPVVHDAPMLSLNNGFADEDIVAFDKRVADALAKATDLAGSVTDPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G QA+TRGDG GE++T N+ I IPL L K+ P +L+VR E
Sbjct: 131 LKFDGLAISLRYENGVFVQAATRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + ++F NPRNAAAG LRQL+ KI + L FFA+G+G L GM
Sbjct: 191 VLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGM 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
MP +H+ LL+WY+ GL + E +V+ G L++F++K+ KR +LPY+IDGVVYK+N
Sbjct: 251 PMPDTHTALLDWYEAFGLPVNRERAVVHGAEGLLDFFRKVGEKRESLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q++LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ ++L RP D+ F +P CP+C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFVMPTECPVCGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
KI + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 KIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L LDR + K A N+L +++K+K TT +RFIY LGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L + A+ E+LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLTPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPK 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y+V G + G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKA 669
Query: 630 IKLNIKILDEKNFVKIVKG 648
+L I +LDE ++++G
Sbjct: 670 EELGIPVLDEDGLHQLLEG 688
>gi|53719773|ref|YP_108759.1| DNA ligase [Burkholderia pseudomallei K96243]
gi|167816389|ref|ZP_02448069.1| DNA ligase [Burkholderia pseudomallei 91]
gi|81379503|sp|Q63T07.1|DNLJ_BURPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|52210187|emb|CAH36166.1| DNA ligase [Burkholderia pseudomallei K96243]
Length = 691
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 307/681 (45%), Positives = 436/681 (64%), Gaps = 43/681 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ + R L+ EL R N AYY+ D P + D +YD+L EL++IE ++P+L+T DS TQ
Sbjct: 11 SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLVTPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK--------LTKNIEYIAE 123
VG V H M+SL+NGF+DEDVI F+KR+ + L +T+ +EY E
Sbjct: 71 VGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGTVTEPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G QASTRGDG GE++T NI I IPL L K P +L+VR E
Sbjct: 131 LKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKRIPRMLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + G ++F NPRNAAAG LRQL+ KI ++ L FFA+G+G L G
Sbjct: 191 VLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFFAYGIGVLDGA 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
+MP +HS LL+WY+ +GL + E +V+ G L+ F+ + +R +LPY+IDGVVYK+N
Sbjct: 251 DMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q +LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ S++L RP D++ F +P CP C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSAVLDRRPADAQEFVMPTECPECGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
+I + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 RIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L+ LDR + K A N++ +++K+K TT +RFIYALGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFSTLVGLDRFAEKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L+ + A + LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLDPIMDAPIDALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPR 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y+V G G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKA 669
Query: 630 IKLNIKILDEKNFVKIVKGFS 650
+L I +LDE +++G +
Sbjct: 670 EELGIPVLDEAGMHTLLEGHA 690
>gi|76810783|ref|YP_333980.1| NAD-dependent DNA ligase [Burkholderia pseudomallei 1710b]
gi|167720173|ref|ZP_02403409.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei DM98]
gi|167911510|ref|ZP_02498601.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 112]
gi|254189298|ref|ZP_04895809.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pasteur 52237]
gi|254259109|ref|ZP_04950163.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710a]
gi|254297202|ref|ZP_04964655.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 406e]
gi|123771899|sp|Q3JR23.1|DNLJ_BURP1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|76580236|gb|ABA49711.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710b]
gi|157807762|gb|EDO84932.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 406e]
gi|157936977|gb|EDO92647.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei Pasteur 52237]
gi|254217798|gb|EET07182.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 1710a]
Length = 691
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 307/681 (45%), Positives = 436/681 (64%), Gaps = 43/681 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ + R L+ EL R N AYY+ D P + D +YD+L EL++IE ++P+L+T DS TQ
Sbjct: 11 SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLVTPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK--------LTKNIEYIAE 123
VG V H M+SL+NGF+DEDVI F+KR+ + L +T+ +EY E
Sbjct: 71 VGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGTVTEPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G QASTRGDG GE++T NI I IPL L K P +L+VR E
Sbjct: 131 LKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKRIPRMLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + G ++F NPRNAAAG LRQL+ KI ++ L FFA+G+G L G
Sbjct: 191 VLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFFAYGIGVLDGA 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
+MP +HS LL+WY+ +GL + E +V+ G L+ F+ + +R +LPY+IDGVVYK+N
Sbjct: 251 DMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q +LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ S++L RP D++ F +P CP C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSAVLDRRPADAQEFVMPTECPECGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
+I + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 RIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L+ LDR + K A N++ +++K+K TT +RFIYALGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFSTLVALDRFAEKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L+ + A + LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLDPIMHAPIDALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPR 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y+V G G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPTLTREAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAKA 669
Query: 630 IKLNIKILDEKNFVKIVKGFS 650
+L I +LDE +++G +
Sbjct: 670 EELGIPVLDEAGMHTLLEGHA 690
>gi|312796238|ref|YP_004029160.1| NAD-dependent DNA ligase [Burkholderia rhizoxinica HKI 454]
gi|312168013|emb|CBW75016.1| NAD-dependent DNA ligase (EC 6.5.1.2) [Burkholderia rhizoxinica HKI
454]
Length = 681
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 296/665 (44%), Positives = 429/665 (64%), Gaps = 35/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L+ EL R N AYY+ D P I D +YD+L EL++IE +P+L+T DS TQ VG
Sbjct: 16 RAAWLRTELDRANHAYYVLDRPEIPDAEYDKLFKELEQIEADHPDLITPDSPTQRVGGAV 75
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E + H M+SL+NGF D DV F+KR+++ L+ ++EY ELKFDG+A++LRYE
Sbjct: 76 AEGFAPIVHDVPMLSLNNGFEDSDVDAFDKRVSDVLQ-HGDVEYACELKFDGLAISLRYE 134
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G QASTRGDG GE++T N+ I +PL LN P++++VR EVL++K+DF +LN
Sbjct: 135 NGRFVQASTRGDGTTGEDVTANVRTIRSLPLTLNGNAVPKVIDVRGEVLMFKRDFERLNA 194
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ G ++F NPRNAAAG LRQL+ +I + L FFA+G+G L G+ MP +HS LL+WY
Sbjct: 195 RQREAGQREFANPRNAAAGSLRQLDSRITAKRPLSFFAYGIGVLDGVPMPDTHSALLDWY 254
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+GL + E +V+ G L+ F++ + +R +LPY+IDGVVYK+N Q +LGF SRA
Sbjct: 255 VNMGLPVNKERAVVRGAAGLLVFFRGVGARRASLPYDIDGVVYKVNRRDEQDRLGFVSRA 314
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PRFALA+KF ++EALT++ AI +Q+GRTG ITPVA L+P+ + G T+T ATLHNE E+ R
Sbjct: 315 PRFALAHKFPAEEALTRLLAIEVQVGRTGAITPVARLEPIFVGGATVTNATLHNEDEVRR 374
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I IGDTV+V R+G+VIP++ +I RP D++ F +P CP+C S I + IARC
Sbjct: 375 KDILIGDTVIVRRAGDVIPEVVGAIKERRPVDARPFTMPTHCPVCGSAIERLPDEAIARC 434
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK L HF+ R+A++I GLG+K+I++LV +++ T DL+ + F + +L
Sbjct: 435 TGGLV-CAAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQSLIRTPADLFSLGFATVAQL 493
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR ++K A N++ ++++++ TT RFIYALGIRHVGE TA++LA +F +L + A+EE
Sbjct: 494 DRFADKSAQNLIDSLERARHTTLPRFIYALGIRHVGEATARDLARHFGSLNALIDASEEA 553
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP------------------ 598
LL + +G +A F ++P +R++I QLR G+ W P
Sbjct: 554 LLEVNDVGPVVAEAIRHFFSEPHNRMVIEQLRAAGVQWPEGPPAPRKPAGPLAGMTVVLT 613
Query: 599 ---------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +SK TNY+V G G KL KA +L I I+DE+
Sbjct: 614 GTLPTLSREAAKERLEAAGAKVAGSVSKKTNYVVAGADAGSKLTKAEELGIPIVDEEGMR 673
Query: 644 KIVKG 648
++++G
Sbjct: 674 RLLEG 678
>gi|171322051|ref|ZP_02910925.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5]
gi|171092642|gb|EDT37943.1| DNA ligase, NAD-dependent [Burkholderia ambifaria MEX-5]
Length = 691
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 307/680 (45%), Positives = 437/680 (64%), Gaps = 45/680 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ R L+ +L R N AYY+ D P + D +YD+L EL+++E +PEL+T DS TQ
Sbjct: 11 SQPEARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFGELQQLETDHPELVTPDSPTQR 70
Query: 72 VG-LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--------KLTKNIEYIA 122
VG V G + VH M+SL+NGF+DED+ F+KR+ + L +T+ +EY
Sbjct: 71 VGGEVAGGFTPVVHDA-PMLSLNNGFADEDIAAFDKRVADALNKTTDLAGSVTEPVEYAC 129
Query: 123 ELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRC 182
ELKFDG+A++LRYE+G QASTRGDG GE++T N+ I IPL L + P LL+VR
Sbjct: 130 ELKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGAHVPALLDVRG 189
Query: 183 EVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG 242
EVL++K+DF +LN+ + ++F NPRNAAAG LRQL+PKI + L FFA+G+G L G
Sbjct: 190 EVLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDG 249
Query: 243 MNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKIN 302
+ MP +HS LL+WY+ GL + E +V+ G + L+ F++K+ KR +LPY+IDGVVYK+N
Sbjct: 250 VPMPDTHSALLDWYESFGLPVNRERAVVYGADGLLGFFRKVGEKRESLPYDIDGVVYKVN 309
Query: 303 CLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGIT 362
Q +LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T
Sbjct: 310 RRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGAT 369
Query: 363 ITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICN 422
+T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ ++L RP+D+ F +P CP+C
Sbjct: 370 VTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPDDAAEFVMPTECPVCG 429
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
SKI + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV ++V T
Sbjct: 430 SKIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELSLVRTP 488
Query: 483 VDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY 542
DL+ + F L LDR + K A N+L +++K+K TT +RFIY LGIRHVGE+TAK+LA +
Sbjct: 489 ADLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKH 548
Query: 543 FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP--- 598
F +L + A+ E+LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 549 FGSLTPIMDASIEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAP 608
Query: 599 ------------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEK 628
G KV +SK T+Y+V G G KL K
Sbjct: 609 KAPQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGADAGSKLAK 668
Query: 629 AIKLNIKILDEKNFVKIVKG 648
A +L I +LDE ++++G
Sbjct: 669 AEELGIPVLDEDGLHQLLEG 688
>gi|418382732|ref|ZP_12966666.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 354a]
gi|418557700|ref|ZP_13122288.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 354e]
gi|385364357|gb|EIF70074.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 354e]
gi|385377074|gb|EIF81694.1| DNA ligase, NAD-dependent [Burkholderia pseudomallei 354a]
Length = 691
Score = 630 bits (1624), Expect = e-178, Method: Compositional matrix adjust.
Identities = 307/681 (45%), Positives = 436/681 (64%), Gaps = 43/681 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ + R L+ EL R N AYY+ D P + D +YD+L EL++IE ++P+L+T DS TQ
Sbjct: 11 SQPAKRAAWLRAELERANYAYYVLDQPDLPDAEYDRLFVELQRIEAEHPDLVTPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK--------LTKNIEYIAE 123
VG V H M+SL+NGF+DEDVI F+KR+ + L +T+ +EY E
Sbjct: 71 VGGEAASGFTPVVHDKPMLSLNNGFADEDVIAFDKRVADGLDKATDLAGTVTEPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G QASTRGDG GE++T NI I IPL L K P +L+VR E
Sbjct: 131 LKFDGLAISLRYENGRFVQASTRGDGTTGEDVTENIRTIRAIPLTLKGKRIPRMLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + G ++F NPRNAAAG LRQL+ KI ++ L FFA+G+G L G
Sbjct: 191 VLMFKRDFARLNERQRAAGQREFANPRNAAAGSLRQLDSKITASRPLSFFAYGIGVLDGA 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
+MP +HS LL+WY+ +GL + E +V+ G L+ F+ + +R +LPY+IDGVVYK+N
Sbjct: 251 DMPDTHSGLLDWYETLGLPVNRERAVVRGAAGLLAFFHSVGERRESLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q +LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQDRLGFVSRAPRFALAHKFPAQEALTKLIAIDVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ S++L RP D++ F +P CP C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVSAVLDRRPADAQEFVMPTECPECGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
+I + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 RIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L+ LDR + K A N++ +++K+K TT +RFIYALGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFSTLVALDRFAEKSARNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L+ + A + LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLDPIMHAPIDALLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRARGKVTWPEGPPAPR 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y+V G G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPTLTREAAKEILEAAGAKVAGSVSKKTDYVVAGADAGSKLAKA 669
Query: 630 IKLNIKILDEKNFVKIVKGFS 650
+L I +LDE +++G +
Sbjct: 670 EELGIPVLDEAGMHTLLEGHA 690
>gi|221198328|ref|ZP_03571374.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2M]
gi|221208267|ref|ZP_03581271.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2]
gi|221171915|gb|EEE04358.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2]
gi|221182260|gb|EEE14661.1| DNA ligase, NAD-dependent [Burkholderia multivorans CGD2M]
Length = 691
Score = 629 bits (1623), Expect = e-177, Method: Compositional matrix adjust.
Identities = 303/679 (44%), Positives = 434/679 (63%), Gaps = 43/679 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ R L+ +L R N AYY+ D P + D +YD+L EL+++E +P+L+T DS TQ
Sbjct: 11 SQPDARAAWLRDQLERANHAYYVLDQPDLPDAEYDRLFRELQQLESDHPDLVTPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--------KLTKNIEYIAE 123
VG V H M+SL+NGF+D+D++ F+KR+ + L +T +EY E
Sbjct: 71 VGGAVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKTTDLAGSVTDPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE+G QASTRGDG GE++T N+ I IPL L P +L+VR E
Sbjct: 131 LKFDGLAISLRYEHGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGDRVPAVLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + ++F NPRNAAAG LRQL+PKI + L FFA+G+G L GM
Sbjct: 191 VLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGM 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
+P +HS LL+WY+ +GL + E +V+ G L++F++K+ KR +LPY+IDGVVYK+N
Sbjct: 251 PIPDTHSALLDWYEALGLPVNRERAVVYGAQGLLDFFRKVGEKRESLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q +LGF SRAPRFALA+KF ++EALTK+ AI +Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIGVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ ++L RP D+ F +P CP+C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFVMPTECPVCGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
KI + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 KIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L LDR + K A N+L +++K+K TT +RFIYALGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L+ + AT ++LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLDPIMNATIDELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPK 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y++ G + G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPNLTRDDAKEMLEAAGAKVAGSVSKKTDYVIAGIEAGSKLAKA 669
Query: 630 IKLNIKILDEKNFVKIVKG 648
L I +LDE ++++G
Sbjct: 670 EALGIPVLDEDGLHQLLEG 688
>gi|209522379|ref|ZP_03270993.1| DNA ligase, NAD-dependent [Burkholderia sp. H160]
gi|209497185|gb|EDZ97426.1| DNA ligase, NAD-dependent [Burkholderia sp. H160]
Length = 688
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 305/673 (45%), Positives = 432/673 (64%), Gaps = 40/673 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L+ EL R N AYY+ D P + D +YD+L EL++IE ++P+L+ DS TQ VG
Sbjct: 17 RAAWLRAELERANYAYYVLDQPDLPDAEYDKLFKELERIEAEHPDLIVPDSPTQRVGGEA 76
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-----KLTKNIEYIAELKFDGIAV 131
+ V H M+SL+NGF+DED++ F+KRI + L + ++Y AELKFDG+A+
Sbjct: 77 ASGFEPVVHDQPMLSLNNGFADEDIVAFDKRIGDALGNNASEPAVPVDYAAELKFDGLAI 136
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+LRY G QASTRGDG GEN+T N+ I IPL L K P +L+VR EVL++K+DF
Sbjct: 137 SLRYVDGVFVQASTRGDGTTGENVTENVRTIRSIPLKLKGKRVPRVLDVRGEVLMFKRDF 196
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
+LN+ + ++F NPRNAAAG LRQL+ KI + L FFA+G+G L G+ MP++HSE
Sbjct: 197 ERLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLEGIEMPATHSE 256
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
LL+WY+++GL + E +V+ G L+ F+ + KR LPY+IDGVVYK+N Q+ LG
Sbjct: 257 LLDWYKEMGLPVNSERAVVQGAEGLLGFFHAVGEKRDRLPYDIDGVVYKVNRRDEQETLG 316
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F SRAPRFALA+KF ++EALT++ AI++Q+GRTG ITPVA L+PV + G T+T ATLHNE
Sbjct: 317 FVSRAPRFALAHKFPAQEALTRLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLHNE 376
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
E+ RK+I+IGDTV+V R+G+VIP++ ++L RP D++ F +P CP+C S I +
Sbjct: 377 DEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAREFVMPTQCPVCGSSIERLPDE 436
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T DL+ + F
Sbjct: 437 AIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPADLFNLGFA 495
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
L LDR + K A N+L +++K+K TT +RFIYALGIRHVGE+TAK+LA +F +L+ +
Sbjct: 496 TLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMD 555
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP------------ 598
A+ E+LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 556 ASLEELLEVNDVGPVVAESIHQFFAEDHNRTVIEQLRAPGKVAWPEGPPAPKAPQGVLVG 615
Query: 599 ---------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
G KV +SK T+Y+V G G KL KA +L I +L
Sbjct: 616 QTVVLTGTLPNLSREDAKEMLEAAGAKVAGSVSKKTSYVVAGADAGSKLAKAEELGIPVL 675
Query: 638 DEKNFVKIVKGFS 650
DE K+++G S
Sbjct: 676 DEDGMRKLLEGHS 688
>gi|390568902|ref|ZP_10249194.1| DNA ligase, NAD-dependent [Burkholderia terrae BS001]
gi|389939251|gb|EIN01088.1| DNA ligase, NAD-dependent [Burkholderia terrae BS001]
Length = 665
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 304/665 (45%), Positives = 432/665 (64%), Gaps = 36/665 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+ EL R N AYY+ D P + D +YD+L EL+++E ++P+L+T DS TQ VG
Sbjct: 3 LRAELERANHAYYVLDQPDLPDAEYDRLFKELQQVESEHPDLITPDSPTQRVGGEVASGF 62
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ V H M+SL+NGFSDED+ F+KR+++ L +++Y ELKFDG+A++LRY G
Sbjct: 63 QPVVHDLPMLSLNNGFSDEDIAAFDKRVSDALH-EASVDYACELKFDGLAISLRYVDGQF 121
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
QASTRGDG GE++T N+ I IPL L K P+LL+VR EVL++K+DF KLN+ +
Sbjct: 122 TQASTRGDGATGEDVTENVRTIRSIPLKLKGKRVPKLLDVRGEVLMFKRDFDKLNQRQRD 181
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIG 260
++F NPRNAAAG LRQL+ KI + L FFA+G+G L G+ MP++HSELL+WY ++G
Sbjct: 182 AEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGIEMPATHSELLDWYHEMG 241
Query: 261 LSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFA 320
L + E +V+ G L+ F++K+ KR LPY+IDGVVYK+N Q LGF SRAPRFA
Sbjct: 242 LPVNSERAVVQGAEGLLGFFQKVGEKREKLPYDIDGVVYKVNRRDQQDTLGFVSRAPRFA 301
Query: 321 LAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQ 380
LA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+T ATLHNE E+ RK+I+
Sbjct: 302 LAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLHNEDEVRRKDIR 361
Query: 381 IGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSW 440
IGDTV+V R+G+VIP++ ++L RP D+ F +P CP+C S I + IARC+G
Sbjct: 362 IGDTVIVRRAGDVIPEVVGALLDRRPADAHEFVMPTQCPVCGSAIERLPDEAIARCTGGL 421
Query: 441 IECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS 500
C AQRK L HF+ R+A++I GLG+K+I++LV N+V T DL+ + F L LDR +
Sbjct: 422 F-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTPADLFNLGFATLAELDRFA 480
Query: 501 NKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNI 560
K A N++ +++K+K TT +RFIYALGIRHVGE+TAK+LA +F +L + A+ E+LL +
Sbjct: 481 EKSAQNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLTPIMDASVEELLEV 540
Query: 561 PKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP--------------------- 598
+G ++ +F + +R +I QLR G + W P
Sbjct: 541 NDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPRAPKAPQGVLAGKTVVLTGTL 600
Query: 599 ------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
G KV +SK T+Y+V G + G KL KA +L + +LDE K++
Sbjct: 601 PTMGRDEAKELLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGVPVLDEDGMRKLL 660
Query: 647 KGFST 651
+G +T
Sbjct: 661 EGQTT 665
>gi|416905342|ref|ZP_11930788.1| NAD-dependent DNA ligase [Burkholderia sp. TJI49]
gi|325529285|gb|EGD06234.1| NAD-dependent DNA ligase [Burkholderia sp. TJI49]
Length = 691
Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust.
Identities = 302/681 (44%), Positives = 434/681 (63%), Gaps = 43/681 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ R L+ +L + N AYY+ D P + D +YD+L EL+++E +PE +T DS TQ
Sbjct: 11 SQPDARAAWLRDQLQQANYAYYVLDQPDLPDAEYDRLFAELQQLEADHPEFVTPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--------KLTKNIEYIAE 123
VG V H M+SL+NGF+D+D++ F+KR+ + L +T +EY E
Sbjct: 71 VGGEVASGFTPVVHDAPMLSLNNGFADDDIVAFDKRVADALGKAVDLAGSVTDPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G QASTRGDG GE++T N+ I IPL L P +L+VR E
Sbjct: 131 LKFDGLAISLRYERGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGADVPAVLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + ++F NPRNAAAG LRQL+PKI + L FFA+G+G L GM
Sbjct: 191 VLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDPKITAQRPLSFFAYGIGVLDGM 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
MP +HS LL+WY+ +GL + E +V+ G + L+ F++K+ KR LPY+IDGVVYK+N
Sbjct: 251 PMPDTHSGLLDWYETLGLPVNRERAVVHGADGLLGFFRKVGEKRDGLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q +LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ ++L RP D+ F +P CP+C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGAVLDRRPADAAEFVMPTECPVCGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
KI + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 KIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L LDR + K A N+L +++K+K TT +RFIY LGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTRARFIYGLGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L+ + A+ ++LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLDPIMNASIDELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPK 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y+V G + G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPNLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKA 669
Query: 630 IKLNIKILDEKNFVKIVKGFS 650
+L I +LDE+ ++++G +
Sbjct: 670 EELGIPVLDEEGLHQLLEGHA 690
>gi|420256245|ref|ZP_14759099.1| DNA ligase, NAD-dependent [Burkholderia sp. BT03]
gi|398043606|gb|EJL36498.1| DNA ligase, NAD-dependent [Burkholderia sp. BT03]
Length = 683
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 304/674 (45%), Positives = 435/674 (64%), Gaps = 36/674 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S + R L+ EL R N AYY+ D P + D +YD+L EL+++E ++P+L+T DS TQ
Sbjct: 12 SAPAERALWLRAELERANHAYYVLDQPDLPDAEYDRLFKELQQVESEHPDLITPDSPTQR 71
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + V H M+SL+NGFSDED+ F+KR+++ L +++Y ELKFDG+A+
Sbjct: 72 VGGEVASGFQPVVHDLPMLSLNNGFSDEDIAAFDKRVSDALH-EASVDYACELKFDGLAI 130
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+LRY G QASTRGDG GE++T N+ I IPL L K P+LL+VR EVL++K+DF
Sbjct: 131 SLRYVDGQFTQASTRGDGATGEDVTENVRTIRSIPLKLKGKRVPKLLDVRGEVLMFKRDF 190
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN+ + ++F NPRNAAAG LRQL+ KI + L FFA+G+G + G+ MP++HS+
Sbjct: 191 DKLNQRQRDAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVVDGIEMPATHSD 250
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
LL+WY ++GL + E +V+ G L+ F++K+ KR LPY+IDGVVYK+N Q LG
Sbjct: 251 LLDWYHEMGLPVNSERAVVQGAEGLLGFFQKVGEKRDKLPYDIDGVVYKVNRRDQQDTLG 310
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+T ATLHNE
Sbjct: 311 FVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATVTNATLHNE 370
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
E+ RK+I+IGDTV+V R+G+VIP++ ++L RP D+ F +P CP+C S I +
Sbjct: 371 DEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAHEFVMPTQCPVCGSAIERLPDE 430
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T DL+ + F
Sbjct: 431 AIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTPADLFNLGFA 489
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
L LDR + K A N++ +++K+K TT +RFIYALGIRHVGE+TAK+LA +F +L +
Sbjct: 490 TLAELDRFAEKSAQNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKHFGSLTPIMD 549
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP------------ 598
A+ E+LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 ASVEELLEVNDVGPIVAESIHQFFAEEHNRTVIEQLRAPGKVTWPEGPRAPKAPQGVLAG 609
Query: 599 ---------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
G KV +SK T+Y+V G + G KL KA +L + +L
Sbjct: 610 KTVVLTGTLPTMGRDEAKELLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAKAEELGVPVL 669
Query: 638 DEKNFVKIVKGFST 651
DE K+++G +T
Sbjct: 670 DEDGMRKLLEGQTT 683
>gi|78066803|ref|YP_369572.1| DNA ligase [Burkholderia sp. 383]
gi|123742568|sp|Q39F38.1|DNLJ_BURS3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|77967548|gb|ABB08928.1| DNA ligase (NAD+) [Burkholderia sp. 383]
Length = 691
Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust.
Identities = 306/679 (45%), Positives = 432/679 (63%), Gaps = 43/679 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ R L+ +L R N AYY+ D P + D +YD+L EL+++E +PEL+T DS TQ
Sbjct: 11 SQPDARAAWLRDQLERANYAYYVLDQPDLPDAEYDRLFRELQQLETDHPELVTPDSPTQR 70
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--------KLTKNIEYIAE 123
VG V H M+SL+NGF+DED+ F+KR+ + L +T+ +EY E
Sbjct: 71 VGGEAAGGFTPVVHDAPMLSLNNGFADEDIAAFDKRVADALDKTTDLAGSVTEPVEYACE 130
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G QASTRGDG GE++T N+ I IPL L K+ P +L+VR E
Sbjct: 131 LKFDGLAISLRYEQGVFVQASTRGDGTTGEDVTENVRTIRSIPLKLKGKHVPAVLDVRGE 190
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL++K+DF +LN+ + ++F NPRNAAAG LRQL+ KI + L FFA+G+G L GM
Sbjct: 191 VLMFKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKITAQRPLSFFAYGIGVLDGM 250
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
M +HS LL+WY+ +GL + E V+ G L+ F++KI KR +LPY+IDGVVYK+N
Sbjct: 251 PMLDTHSALLDWYESLGLPVNREREVVQGAEGLLGFFRKIGEKRESLPYDIDGVVYKVNR 310
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
Q++LGF SRAPRFALA+KF ++EALTK+ AI++Q+GRTG ITPVA L+PV + G T+
Sbjct: 311 RDEQERLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVFVGGATV 370
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE E+ RK+I+IGDTV+V R+G+VIP++ ++L RP D+ F +P CP+C S
Sbjct: 371 TNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDRRPADAAEFVMPTECPVCGS 430
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
KI + IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T
Sbjct: 431 KIERLPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTPA 489
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + F L LDR + K A N+L +++K+K TT +RFIY LGIRHVGE+TAK+LA +F
Sbjct: 490 DLFNLGFATLAELDRFAEKSAQNLLDSLEKAKHTTLARFIYGLGIRHVGESTAKDLAKHF 549
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYWLNNP---- 598
+L + A+ E+LL + +G ++ +F + +R +I QLR G + W P
Sbjct: 550 GSLTPIMDASIEELLEVNDVGPIVAESLHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAPK 609
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
G KV +SK T+Y+V G + G KL KA
Sbjct: 610 APQGVLAGKTVVLTGTLPTLTRDAAKEMLEAAGAKVAGSVSKKTDYVVAGAEAGSKLVKA 669
Query: 630 IKLNIKILDEKNFVKIVKG 648
+L I +LDE ++++G
Sbjct: 670 EELGIPVLDEDGLHQLLEG 688
>gi|393777006|ref|ZP_10365300.1| dna ligase [Ralstonia sp. PBA]
gi|392716363|gb|EIZ03943.1| dna ligase [Ralstonia sp. PBA]
Length = 713
Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust.
Identities = 303/696 (43%), Positives = 422/696 (60%), Gaps = 64/696 (9%)
Query: 15 SFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGL 74
+ RV L++ L HN YY+ D P I D +YD L EL+ +E ++PEL + +S TQ VG
Sbjct: 20 AARVDWLRQTLEHHNYQYYVLDAPSIPDAEYDALFRELQALEAEHPELQSPESPTQRVGG 79
Query: 75 VGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKN---------------- 117
V H M+SL+N F EDV+ F++R L KL K
Sbjct: 80 AALSVFSQVTHRIPMLSLNNAFDAEDVVAFDRRCAEGLGKLAKGKAARDAQAASPMGDLF 139
Query: 118 --------------IEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIH 163
+EY AELKFDG+A++LRYE G L QA+TRGDG GE++T N+ I
Sbjct: 140 AEPSTSAAPSESSGVEYAAELKFDGLAISLRYEQGRLVQAATRGDGTTGEDVTANVRTIR 199
Query: 164 KIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPK 223
+PL L+ K P +LEVR EV + KDF LN + G K F NPRNAAAG LRQL+PK
Sbjct: 200 SLPLKLHGKAP-AVLEVRGEVFMLHKDFEALNARQRDAGEKTFVNPRNAAAGSLRQLDPK 258
Query: 224 INKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKI 283
I + L FF++G+GEL G P+SH+ +L+W+ +GL +C E V+ G L+ FY+ I
Sbjct: 259 ITAKRPLSFFSYGIGELEGAARPASHAAMLDWFATLGLPVCAERQVVQGATGLLAFYEDI 318
Query: 284 NIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGR 343
+R +LPY+IDGVVYK+N + Q+ LGF SRAPRFA+A+KF ++E T + I +Q+GR
Sbjct: 319 GARRASLPYDIDGVVYKVNAFTEQETLGFVSRAPRFAIAHKFPAQEMTTTLLDIEVQVGR 378
Query: 344 TGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILS 403
TG ITPVA L+PV + G+T+T ATLHNE EI RK+++IGDTV+V R+G+VIP+I +
Sbjct: 379 TGAITPVARLEPVFVGGVTVTNATLHNEDEIARKDVRIGDTVIVRRAGDVIPEIVGVVAE 438
Query: 404 LRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNII 463
RP D++ F +P CP+C S I E IARC+G C AQRK L HF+SR+AM+I
Sbjct: 439 RRPADARTFVMPTTCPVCGSHIERPEDEAIARCTGGLF-CGAQRKQALWHFASRRAMDID 497
Query: 464 GLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFI 523
G+G K++E+LV+ IV T DLYK+ L LDR+++K A+N++ AI KS+ TT +RFI
Sbjct: 498 GMGDKIVEQLVDQQIVRTPADLYKLGVAKLAALDRMADKSASNLVAAIDKSRATTLARFI 557
Query: 524 YALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLL 583
YALGIRHVGE TAK+LA +F NL+ + A+E +LL + +G ++ F+ +P + +
Sbjct: 558 YALGIRHVGEATAKDLARHFGNLDALLAASEAELLQVRDVGPVVAQSIANFLAEPHNVEV 617
Query: 584 ISQLRDVGIYWLNNP-------------------------------NTKGGKVVNFISKN 612
I QLR G++W G KV +SK
Sbjct: 618 IEQLRAAGVHWDEQEAALGPQPLAGKTIVLTGTLPTLARDAAKEMLEAAGAKVAGSVSKK 677
Query: 613 TNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 648
T+Y+V G + G KL KA +L I +LDE+ +++++G
Sbjct: 678 TDYVVAGAEAGSKLAKAEELGIPVLDEEGMLRLLQG 713
>gi|113868039|ref|YP_726528.1| NAD-dependent DNA ligase [Ralstonia eutropha H16]
gi|123133949|sp|Q0KA11.1|DNLJ_CUPNH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|113526815|emb|CAJ93160.1| NAD-dependent DNA ligase [Ralstonia eutropha H16]
Length = 709
Score = 625 bits (1613), Expect = e-176, Method: Compositional matrix adjust.
Identities = 302/671 (45%), Positives = 421/671 (62%), Gaps = 47/671 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV L+ EL RHN YY+ D P I D +YD L EL+ +E ++PEL T DS TQ VG
Sbjct: 27 RVAWLRDELDRHNYQYYVLDAPTIPDAEYDALFSELQALELEHPELQTPDSPTQRVGGEP 86
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-------------KNIEYIAE 123
V H M+SL+NGF+D+DV+ F++R L T +EY E
Sbjct: 87 LSAFDSVRHRVPMLSLNNGFADDDVLNFDRRCAQGLGRTAPAAGEQDLFSAADAVEYACE 146
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G L QA+TRGDG GE++T N+ I IPL L + P +LEVR E
Sbjct: 147 LKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTVNVRTIKAIPLKLRGQAP-AVLEVRGE 205
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
V +Y+ DF KLN+ + G K F NPRNAAAG LRQL+P+I + L FFA+G+GEL+G+
Sbjct: 206 VFMYRGDFDKLNERQAEAGEKTFVNPRNAAAGSLRQLDPRITAKRPLSFFAYGLGELQGV 265
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
+ P +HS +L+ + +GL +C + +V+ G L++FY+ I +R LPY+IDGVVYK+N
Sbjct: 266 DRPPTHSAMLDGFAALGLPVCKDRAVVKGAQGLLDFYRDIGQRRDALPYDIDGVVYKVNA 325
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
L+ Q++LGF SRAPRFALA+KF ++E T ++ I +Q+GRTG ITPVA LKPV + G+T+
Sbjct: 326 LAEQERLGFVSRAPRFALAHKFPAQEMTTIVEDIEVQVGRTGAITPVARLKPVFVGGVTV 385
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE EI RK++ IGDTV+V R+G+VIP++ + + RP+D++ F +P CP+C S
Sbjct: 386 TNATLHNEDEIRRKDVHIGDTVIVRRAGDVIPEVVAVVTERRPDDARAFVMPTACPVCGS 445
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
I +E IARC+G I C AQRK L HF+ R+AM+I GLG K++E+LV+ IV T
Sbjct: 446 HIEKLEDEAIARCTGGLI-CAAQRKQALLHFAQRRAMDIEGLGDKLVEQLVDQGIVRTPA 504
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+K+ L L+R+++K A N++ AI S+ TT +RFI+ALGIRHVGE TAK+LA +F
Sbjct: 505 DLFKLGVAKLAALERMADKSAANLVAAIDASRETTMNRFIFALGIRHVGEATAKDLARHF 564
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL-NNPNTK- 601
L+ + A E LL + +G ++ F +P + +I QLR G++W + P K
Sbjct: 565 GKLDALMAADEAALLEVNDVGPVVAQSIAHFFAEPHNVEVIEQLRAAGVHWTESEPVAKA 624
Query: 602 ------------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIK 631
G KV +SK T+Y+V G + G KL+KA
Sbjct: 625 PAPLSGKTFVLTGTLPTMSREDAKELLEAAGAKVAGSVSKKTDYVVAGAEAGSKLDKAEA 684
Query: 632 LNIKILDEKNF 642
L + +LDE
Sbjct: 685 LGVPVLDEAGM 695
>gi|350543790|ref|ZP_08913479.1| DNA ligase [Candidatus Burkholderia kirkii UZHbot1]
gi|350528410|emb|CCD35676.1| DNA ligase [Candidatus Burkholderia kirkii UZHbot1]
Length = 692
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 298/667 (44%), Positives = 431/667 (64%), Gaps = 36/667 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L+ EL R N AYY+ D P + D +YD L EL+ IE +P+L+T DS TQ VG
Sbjct: 28 RAAWLRSELERANYAYYVLDQPDLPDAEYDTLFKELQGIEADHPDLITSDSPTQLVGGEV 87
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E V H M+SL+NGF+DED++ F+KR+++ L +EY ELKFDG+A++LRY+
Sbjct: 88 AEGFTPVVHDVPMLSLNNGFADEDIVAFDKRVSDTLGHAA-VEYACELKFDGLAISLRYD 146
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G QA+TRGDG GE++T N+ I IPL L K+ P+ L+VR EVL++K+DF +LN
Sbjct: 147 DGKFVQAATRGDGATGEDVTANVRTIRSIPLTLKGKHVPKRLDVRGEVLMFKRDFERLNA 206
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ G ++F NPRNAAAG LRQL+PK+ + L FFA+G+G L G MP++H++LL+WY
Sbjct: 207 RQRDAGQREFANPRNAAAGGLRQLDPKMTAQRSLSFFAYGIGVLEGAEMPATHADLLDWY 266
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+++GL + E +V+ G + L+ F+ +I KR LPY+IDGVVYK++ + Q KLGF SRA
Sbjct: 267 KEMGLPVNAERAVVQGADGLLGFFHRIGEKRDKLPYDIDGVVYKVDRRAEQDKLGFVSRA 326
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PRFALA+KF ++EALT++ AI++Q+GRTG ITPVA L PV + G T+T ATLHNE E+ R
Sbjct: 327 PRFALAHKFPAQEALTQLLAIDVQVGRTGAITPVARLAPVFVCGATVTNATLHNEDEVRR 386
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I IGDTV V R+G+VIP++ +IL RP D++ F +P CP+C SKI + IARC
Sbjct: 387 KDICIGDTVTVRRAGDVIPEVVGAILDRRPADAREFVMPTECPVCGSKIERLPDEAIARC 446
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C QRK L HF+ R+A++I GLG+K+I++LV N+V T DL+ + F L L
Sbjct: 447 TGGLF-CPEQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPADLFNLGFSTLAAL 505
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR ++K A N++ +++K++ TT +RFIYALGIRHVGE+TAK+LA +F +L+ + A+ E+
Sbjct: 506 DRFADKSAQNLIDSLEKARKTTLARFIYALGIRHVGESTAKDLAKHFGSLDPIMSASVEE 565
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP------------------ 598
LL + +G + F ++ ++ +I QLR + W P
Sbjct: 566 LLEVSDVGPIVAEVIHNFFSEEHNQHVIEQLR-AKVSWPEGPPAPRAPQGVLAGKTVVLT 624
Query: 599 ---------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +S+ T+Y+V G + G KL KA +L + +LDE
Sbjct: 625 GTLPSLSREEAKEMLEAAGAKVAGSVSQKTDYVVAGAEAGSKLAKAEELGVPVLDEDGMR 684
Query: 644 KIVKGFS 650
K+++G +
Sbjct: 685 KLLEGVT 691
>gi|194289797|ref|YP_002005704.1| DNA ligase [Cupriavidus taiwanensis LMG 19424]
gi|254781303|sp|B3R2C2.1|DNLJ_CUPTR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|193223632|emb|CAQ69639.1| DNA ligase [Cupriavidus taiwanensis LMG 19424]
Length = 709
Score = 623 bits (1606), Expect = e-175, Method: Compositional matrix adjust.
Identities = 299/671 (44%), Positives = 421/671 (62%), Gaps = 47/671 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV L++EL RHN YY+ D P + D +YD L EL +E ++PEL T DS TQ VG
Sbjct: 27 RVAWLREELDRHNYQYYVLDAPTVPDAEYDALFSELMALELEHPELQTPDSPTQRVGGEP 86
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-------------KNIEYIAE 123
V H M+SL+N F+DEDV+ F++R L T +EY E
Sbjct: 87 LSAFDSVRHRVPMLSLNNAFADEDVLNFDRRCAQGLGRTAPAAGEADLFSAADAVEYACE 146
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G L QA+TRGDG GE++T N+ I IPL L + P +LEVR E
Sbjct: 147 LKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTVNVRTIKAIPLKLRGQAP-AVLEVRGE 205
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
V ++++DF KLN + G K F NPRNAAAG LRQL+P+I + L FFA+G+GEL+G+
Sbjct: 206 VFMFRRDFDKLNARQAEAGEKTFVNPRNAAAGSLRQLDPRITARRPLSFFAYGLGELQGV 265
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
P +HS +L+ + +GL +C + +V+ G L++FY+ I +R +LPY+IDGVVYK+N
Sbjct: 266 ERPPTHSAMLDGFAALGLPVCKDRAVVKGAQGLLDFYRDIGKRRDDLPYDIDGVVYKVNA 325
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
L+ Q++LGF SRAPRFALA+KF ++E T ++ I +Q+GRTG ITPVA L+PV + G+T+
Sbjct: 326 LAEQERLGFVSRAPRFALAHKFPAQEMTTVVEDIEVQVGRTGAITPVARLRPVFVGGVTV 385
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE EI RK++ +GDTV+V R+G+VIP++ + + RP D++ F +P CP+C S
Sbjct: 386 TNATLHNEDEIRRKDVHVGDTVIVRRAGDVIPEVVAVVAERRPADARAFVMPTACPVCGS 445
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
I +E IARC+G I C AQRK L HF+ R+AM+I GLG +++E+LV+ IV T
Sbjct: 446 HIEKLEDEAIARCTGGLI-CAAQRKQSLLHFAQRRAMDIEGLGDRLVEQLVDQGIVRTPA 504
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DLYK+ L L+R+++K A N++ AI KS+ TT +RFI+ALGIRHVGE TAK+LA +F
Sbjct: 505 DLYKLGVAKLAALERMADKSAANLVAAIDKSRATTMNRFIFALGIRHVGEATAKDLARHF 564
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------- 594
L+ + A E LL + +G ++ F +P + +I QLR G++W
Sbjct: 565 GKLDALMAADEAALLEVNDVGPVVAQSIAHFFAEPHNVEVIEQLRAAGVHWPESEPVAKS 624
Query: 595 -----------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIK 631
L+ + K G KV +SK T+Y+V G + G KL+KA
Sbjct: 625 PAPLSGKTFVLTGTLPTLSREDAKELLEAAGAKVAGSVSKKTDYVVAGAEAGSKLDKAEA 684
Query: 632 LNIKILDEKNF 642
L + +LDE
Sbjct: 685 LGVPVLDEAGM 695
>gi|339326126|ref|YP_004685819.1| DNA ligase LigA [Cupriavidus necator N-1]
gi|338166283|gb|AEI77338.1| DNA ligase LigA [Cupriavidus necator N-1]
Length = 709
Score = 622 bits (1605), Expect = e-175, Method: Compositional matrix adjust.
Identities = 302/671 (45%), Positives = 420/671 (62%), Gaps = 47/671 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV L+ EL RHN YY+ D P I D +YD L EL+ +E ++PEL T DS TQ VG
Sbjct: 27 RVAWLRDELDRHNYQYYVLDAPTIPDAEYDALFSELQALELEHPELQTPDSPTQRVGGEP 86
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-------------KNIEYIAE 123
V H M+SL+NGF+D+DV+ F++R L T +EY E
Sbjct: 87 LSAFDSVRHRVPMLSLNNGFADDDVLNFDRRCAQGLGRTAPAAGEQDLFSAADAVEYACE 146
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A++LRYE G L QA+TRGDG GE++T N+ I IPL L + P +LEVR E
Sbjct: 147 LKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTVNVRTIKAIPLKLRGQAP-AVLEVRGE 205
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
V +Y+ DF KLN+ + G K F NPRNAAAG LRQL+P+I + L FFA+G+GEL+G+
Sbjct: 206 VFMYRGDFDKLNERQAEAGEKTFVNPRNAAAGSLRQLDPRITAKRPLSFFAYGLGELQGV 265
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
+ P +HS +L+ + +GL +C + +V+ G L++FY+ I +R LPY+IDGVVYK+N
Sbjct: 266 DRPPTHSVMLDGFAALGLPVCKDRAVVKGAQGLLDFYRDIGQRRDVLPYDIDGVVYKVNA 325
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
L+ Q++LGF SRAPRFALA+KF ++E T ++ I +Q+GRTG ITPVA LKPV + G+T+
Sbjct: 326 LAEQERLGFVSRAPRFALAHKFPAQEMTTIVEDIEVQVGRTGAITPVARLKPVFVGGVTV 385
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
T ATLHNE EI RK++ IGDTV+V R+G+VIP++ + RP D++ F +P CP+C S
Sbjct: 386 TNATLHNEDEIRRKDVHIGDTVIVRRAGDVIPEVVGVVTERRPADARAFVMPTACPVCGS 445
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
I +E IARC+G I C AQRK L HF+ R+AM+I GLG K++E+LV+ IV T
Sbjct: 446 HIEKLEDEAIARCTGGLI-CAAQRKQALLHFAQRRAMDIEGLGDKLVEQLVDQGIVRTPA 504
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+K+ L L+R+++K A N+++AI S+ TT +RFI+ALGIRHVGE TAK+LA +F
Sbjct: 505 DLFKLGVAKLAALERMADKSAANLVVAIDASRETTMNRFIFALGIRHVGEATAKDLARHF 564
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL-NNPNTK- 601
L+ + A E LL + +G ++ F +P + +I QLR G++W + P K
Sbjct: 565 GKLDALMAADEAALLEVNDVGPVVAQSIAHFFAEPHNVEVIEQLRAAGVHWAESEPVAKA 624
Query: 602 ------------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIK 631
G KV +SK T+Y+V G + G KL+KA
Sbjct: 625 PAPLSGKTFVLTGTLPTMSREDAKELLEAAGAKVAGSVSKKTDYVVAGAEAGSKLDKAEA 684
Query: 632 LNIKILDEKNF 642
L + +LDE
Sbjct: 685 LGVPVLDEAGM 695
>gi|339483630|ref|YP_004695416.1| DNA ligase [Nitrosomonas sp. Is79A3]
gi|338805775|gb|AEJ02017.1| DNA ligase [Nitrosomonas sp. Is79A3]
Length = 699
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 304/674 (45%), Positives = 437/674 (64%), Gaps = 38/674 (5%)
Query: 10 NFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLT 69
N K+ V +L+ E+ HN YY+ DNP I D +YD+LL EL+++E+ YP+L+T DS T
Sbjct: 28 NIEKIKQHVQDLRAEIELHNYRYYVLDNPSIPDAEYDKLLRELQQVEQDYPQLITADSPT 87
Query: 70 QHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGI 129
Q VG + + H M+SL+N F D +V +FN+R+ L + +++EY E KFDG+
Sbjct: 88 QRVGAAPLKAFSQITHRIPMLSLNNAFDDTEVEVFNRRVCEGLSV-EHVEYTVEPKFDGL 146
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV+L YE G LK +TRGDGN GE+IT N+ I IPL L +K PP LLEVR EVL+ K
Sbjct: 147 AVSLCYENGILKTGATRGDGNTGEDITLNLKTIKSIPLSLPVKNPPPLLEVRGEVLMLKA 206
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP-SS 248
DF+ LN+ + G K+F NPRNAAAG LRQL+P I + L FF++GVG+ +MP +
Sbjct: 207 DFLALNQRQLAKGEKEFANPRNAAAGSLRQLDPAITATRRLTFFSYGVGQYEDAHMPHDT 266
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
HS +L++ + + E V++G+ L+++Y+ I +R NLPY IDGVVYKIN LS Q+
Sbjct: 267 HSNILSYLFDLHFPVAKECQVVTGLRGLLDYYQAIGAQRENLPYAIDGVVYKINSLSQQE 326
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
KLGF SRAPRFA+A+KF ++EA+T++ AI++Q+GRTG +TPVA LKPV + G+T+T ATL
Sbjct: 327 KLGFVSRAPRFAIAHKFPAQEAVTELLAIDVQVGRTGALTPVARLKPVFVGGVTVTNATL 386
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYI 428
HN EI RK+++IGDTV+V R+G+VIP+I S I RPNDS++F +P+ CP+C +K + +
Sbjct: 387 HNADEIERKDVRIGDTVIVRRAGDVIPEIVSVIPEKRPNDSQLFTMPSHCPVCGAKAVRL 446
Query: 429 ESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488
+RC+G C AQRK + HF+SR+A++I GLG K+++++V+ IV T DLYK+
Sbjct: 447 PDEAASRCTGGLF-CPAQRKQAILHFASRRALDIEGLGDKLVDQMVDNAIVRTPADLYKL 505
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
L L+R+++K ANNIL AI+KSK TT +RFIYALGIR+VGE TAK+LA + +L
Sbjct: 506 GITALANLERMADKSANNILQAIEKSKHTTLARFIYALGIRNVGEATAKDLAAHLGSLNR 565
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK------- 601
+ +A E+L IP IG ++ + F + + +I QLR G++W +
Sbjct: 566 LIEADTERLQQIPDIGPVVAQSIVDFFAEAHNCEVIEQLRASGVHWDEHEGKSSLSAAAA 625
Query: 602 ----------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLN 633
GGKV +SK T+Y+V G PG K +KA+ L
Sbjct: 626 PLQGKTFVLTGTLPAMSREAAKERIEALGGKVSGSVSKKTDYVVVGADPGSKHDKALSLG 685
Query: 634 IKILDEKNFVKIVK 647
I +LDE +++++
Sbjct: 686 IPVLDEAGLLELLQ 699
>gi|94310370|ref|YP_583580.1| DNA ligase, NAD(+)-dependent [Cupriavidus metallidurans CH34]
gi|123383876|sp|Q1LNG5.1|DNLJ_RALME RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|93354222|gb|ABF08311.1| DNA ligase, NAD(+)-dependent [Cupriavidus metallidurans CH34]
Length = 721
Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust.
Identities = 303/695 (43%), Positives = 421/695 (60%), Gaps = 67/695 (9%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L++EL R++ YY+ D P I D YD L EL+ +E ++PELLT DS TQ VG
Sbjct: 23 RAQWLREELERYSYQYYVLDAPTIPDADYDALFIELQALEAEHPELLTPDSPTQRVGGAP 82
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL------------------------ 112
V H M+SL+NGF DEDVI F++R L
Sbjct: 83 LSAFDSVRHRVPMLSLNNGFEDEDVINFDRRCAQGLGRATAAAPAAFATPAAPADDLFSA 142
Query: 113 ---------KLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIH 163
+EY ELKFDG+A++LRYE G L QA+TRGDG GE++T N+ I
Sbjct: 143 ADAAEAAANTAGNAVEYACELKFDGLAMSLRYENGTLVQAATRGDGETGEDVTANVRTIK 202
Query: 164 KIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPK 223
IPL L P +LEVR EV +Y+ DF KLN + G K F NPRNAAAG LRQL+P+
Sbjct: 203 AIPLKLR-GTAPSVLEVRGEVFMYRADFDKLNARQAESGEKTFVNPRNAAAGSLRQLDPR 261
Query: 224 INKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKI 283
I + L FFA+GVGE+ G + P +HS +L+ + K+GL +C E V+ G L+ F++++
Sbjct: 262 ITAKRPLSFFAYGVGEMEGFDRPGTHSAMLDGFAKLGLPVCDERRVVRGAQGLLSFHREV 321
Query: 284 NIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGR 343
+R LPY+IDGVVYK+N ++ Q++LGF SRAPRFALA+KF ++E T ++ I +Q+GR
Sbjct: 322 GERRDQLPYDIDGVVYKVNAIAEQEQLGFVSRAPRFALAHKFPAQEMTTTVEDIEVQVGR 381
Query: 344 TGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILS 403
TG ITPVA L PV + G+T+T ATLHNE EI RK++ IGDTV+V R+G+VIP++ + +L
Sbjct: 382 TGAITPVARLAPVFVGGVTVTNATLHNEDEIRRKDVHIGDTVIVRRAGDVIPEVVAVVLE 441
Query: 404 LRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNII 463
RP D++ F +P CP+C S + +E IARC+G I C AQRK L HF+ R+AM+I
Sbjct: 442 RRPADARAFVMPTECPVCGSHVERLEGEAIARCTGGLI-CAAQRKQALLHFAQRRAMDIE 500
Query: 464 GLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFI 523
GLG K++E+LV+ IV T DLYK+ L LDR+++K A+N++ AI++S+ TT +RFI
Sbjct: 501 GLGDKVVEQLVDLGIVRTPADLYKLGVAKLAALDRMADKSASNLVAAIEQSRETTMNRFI 560
Query: 524 YALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLL 583
+ALGIRHVGE TAK+LA +F L+ + A E LL + +G ++ FI +P + +
Sbjct: 561 FALGIRHVGEATAKDLAKHFGKLDNLLAADEAALLEVNDVGPVVAQSIANFIAEPHNVEV 620
Query: 584 ISQLRDVGIYWLNNPNT--------------------------------KGGKVVNFISK 611
I QLR G++W T G KV +SK
Sbjct: 621 IEQLRAAGVHWAETEPTARAPLPLAGKTFVLTGTLPTMSREDAKEKLEAAGAKVAGSVSK 680
Query: 612 NTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
T+Y+V G + G KLEKA L + +LDE+ +K++
Sbjct: 681 KTDYVVAGAEAGSKLEKAQTLGVAVLDEEGMLKLL 715
>gi|430808709|ref|ZP_19435824.1| DNA ligase, NAD(+)-dependent [Cupriavidus sp. HMR-1]
gi|429498884|gb|EKZ97370.1| DNA ligase, NAD(+)-dependent [Cupriavidus sp. HMR-1]
Length = 718
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 302/692 (43%), Positives = 423/692 (61%), Gaps = 64/692 (9%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L++EL R++ YY+ D P I D YD L EL+ +E ++PELLT DS TQ VG
Sbjct: 23 RAQWLREELERYSYQYYVLDAPTIPDADYDALFIELQALEAEHPELLTPDSPTQRVGGAP 82
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL------------------------ 112
V H M+SL+NGF DEDVI F++R L
Sbjct: 83 LSAFDSVRHRVPMLSLNNGFEDEDVINFDRRCAQGLGRATPAAPATPAAPVDDLFSAADA 142
Query: 113 ------KLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIP 166
+EY ELKFDG+A++LRYE G L QA+TRGDG GE++T N+ I IP
Sbjct: 143 AEAAASNAGNTVEYACELKFDGLAMSLRYENGTLVQAATRGDGETGEDVTANVRTIKAIP 202
Query: 167 LVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINK 226
L L P +LEVR EV +Y+ DF KLN + G K F NPRNAAAG LRQL+P+I
Sbjct: 203 LKLR-GNAPSVLEVRGEVFMYRADFDKLNARQAESGEKTFVNPRNAAAGSLRQLDPRITA 261
Query: 227 NKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIK 286
+ L FFA+GVGE+ G++ P +HS +L+ + K+GL +C E V+ G L+ F++++ +
Sbjct: 262 KRPLSFFAYGVGEMEGVDRPVTHSAMLDGFAKLGLPVCDERRVVRGAQGLLAFHREVGER 321
Query: 287 RFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGI 346
R LPY+IDGVVYK+N ++ Q++LGF SRAPRFALA+KF ++E T ++ I +Q+GRTG
Sbjct: 322 RDQLPYDIDGVVYKVNAIAEQEQLGFVSRAPRFALAHKFPAQEMTTTVEDIEVQVGRTGA 381
Query: 347 ITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRP 406
ITPVA L PV + G+T+T ATLHNE EI RK++ IGDTV+V R+G+VIP++ + +L RP
Sbjct: 382 ITPVARLAPVFVGGVTVTNATLHNEDEIRRKDVHIGDTVIVRRAGDVIPEVVAVVLERRP 441
Query: 407 NDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLG 466
D++ F +P CP+C S + +E IARC+G I C AQRK L HF+ R+AM+I GLG
Sbjct: 442 ADARAFVMPTECPVCGSHVERLEGEAIARCTGGLI-CAAQRKQALLHFAQRRAMDIEGLG 500
Query: 467 KKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYAL 526
K++E+LV+ IV T DLYK+ L LDR+++K A+N+++AI++S+ TT +RFI+AL
Sbjct: 501 DKVVEQLVDLGIVRTPADLYKLGVAKLAALDRMADKSASNLVVAIEQSRETTMNRFIFAL 560
Query: 527 GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQ 586
GIRHVGE TAK+LA +F L+ + A E LL + +G ++ F+ +P + +I Q
Sbjct: 561 GIRHVGEATAKDLAKHFGKLDNLLAADEAALLEVNDVGPVVAQSIANFLAEPHNVEVIEQ 620
Query: 587 LRDVGIYWLNNPNT--------------------------------KGGKVVNFISKNTN 614
LR G++W T G KV +SK T+
Sbjct: 621 LRAAGVHWAETEPTARAPLPLAGKTFVLTGTLPTMSREDAKEKLEAAGAKVAGSVSKKTD 680
Query: 615 YLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
Y+V G + G KLEKA L + +LDE+ +K++
Sbjct: 681 YVVAGAEAGSKLEKAQTLGVAVLDEEGMLKLL 712
>gi|325982988|ref|YP_004295390.1| NAD-dependent DNA ligase [Nitrosomonas sp. AL212]
gi|325532507|gb|ADZ27228.1| DNA ligase, NAD-dependent [Nitrosomonas sp. AL212]
Length = 677
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 300/674 (44%), Positives = 426/674 (63%), Gaps = 38/674 (5%)
Query: 10 NFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLT 69
K+ R+ +L+ E+ HN YY+ D P I D +YD+LL EL+ IE+ YP+L+T DS T
Sbjct: 4 GIEKIRHRIQDLRAEIELHNYRYYVLDTPTIPDAEYDRLLRELQHIEQDYPQLITADSPT 63
Query: 70 QHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGI 129
Q VG + V H M+SL N F D +V F++R+ L + N+EY E KFDG+
Sbjct: 64 QRVGAAPLKAFSQVVHRRPMLSLSNAFDDAEVEAFDRRVCEGLAV-DNVEYAVEPKFDGL 122
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV+L YE G K +TRGDG GENIT N+ I IPL L + PP LEVR EVL+ +
Sbjct: 123 AVSLCYENGIFKTGATRGDGYTGENITLNLRTIRSIPLSLPVLNPPSWLEVRGEVLMLRA 182
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP-SS 248
DF+ LN+ + G K+F NPRNAAAG LRQL+P I + L FFA+GVGE + +MP
Sbjct: 183 DFLALNQRQSAKGEKEFANPRNAAAGSLRQLDPGITATRRLTFFAYGVGEYQDCHMPLDK 242
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
HS ++ + + I E V+ G+ +L+ +Y+ I ++R LPY+IDGVVYK+N L+ Q+
Sbjct: 243 HSHVMAYLASLHFPIAKEGGVVKGLQELLAYYQTIEVQRVRLPYDIDGVVYKVNSLAQQE 302
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
+LGF SRAPRFALA+KF ++EA+T++ I IQ+GRTG +TPVA LKPV + G+T+T ATL
Sbjct: 303 RLGFVSRAPRFALAHKFPAQEAITQLSGIEIQVGRTGALTPVARLKPVFVGGVTVTNATL 362
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYI 428
HN EI RK+++IGDTV+V R+G+VIP+I S IL RP D+++F +P CP+C +K + +
Sbjct: 363 HNADEIERKDVRIGDTVIVRRAGDVIPEIVSVILEKRPVDTQVFVMPEHCPVCGAKAVRL 422
Query: 429 ESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488
++RC+G C AQRK + HF+SR+AM+I GLG K++E++V+ I+ T DLYK+
Sbjct: 423 VDEAVSRCTGGLF-CPAQRKQAILHFASRRAMDIEGLGDKLVEQMVDRAIIRTPADLYKL 481
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
L L+R++ K A NIL AI+KSK TT +RFIYALGIR+VGE TAK+LA + +L+
Sbjct: 482 GLGALADLERMAEKSAGNILRAIEKSKHTTLARFIYALGIRNVGEATAKDLAAHCGSLDR 541
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------- 594
+ +A E+L IP +G ++ F + +R +I QLR G+YW
Sbjct: 542 LIEAGSERLQQIPDVGPVVAQSIADFFAEAHNREVIEQLRACGVYWNEHEGISVLAGEAR 601
Query: 595 ---------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLN 633
++ K GGKV +SK T+Y+V G PG K +KA+ L
Sbjct: 602 PLQGKTFVLTGTLPIMSREEAKEKIELLGGKVSGSVSKKTDYVVVGADPGSKYDKALSLG 661
Query: 634 IKILDEKNFVKIVK 647
I +LDE +++++
Sbjct: 662 IAVLDEAGLLELLQ 675
>gi|238026897|ref|YP_002911128.1| DNA ligase, NAD-dependent [Burkholderia glumae BGR1]
gi|237876091|gb|ACR28424.1| DNA ligase, NAD-dependent [Burkholderia glumae BGR1]
Length = 747
Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust.
Identities = 301/736 (40%), Positives = 434/736 (58%), Gaps = 99/736 (13%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ S R L++EL R N AYY+ D P + D +YD+L EL++IE ++P+ +T DS TQ
Sbjct: 12 SQPSERAAWLRQELERANHAYYVLDQPELLDAEYDRLFRELQQIEAEHPDFITPDSPTQR 71
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK-------LTKNIEYIAEL 124
VG + V H M+SL+NGF+DED+ F+KR+ + L + +EY EL
Sbjct: 72 VGGEAADGFTPVLHDAPMLSLNNGFTDEDIAAFDKRVADALGKAVDLAGTAEPVEYACEL 131
Query: 125 KFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEV 184
KFDG+A++LRY +G QA+TRGDG GE++T N+ I IPL L K+PP LL+VR EV
Sbjct: 132 KFDGLAISLRYVHGKFTQAATRGDGTTGEDVTENVRTIKSIPLTLKGKHPPALLDVRGEV 191
Query: 185 LIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN 244
L+YK+DF +LN+ + ++F NPRNAAAG LRQL+ K+ + L FFA+G+G L G
Sbjct: 192 LMYKRDFARLNERQRAAEQREFANPRNAAAGSLRQLDSKVTAQRPLSFFAYGIGVLDGAP 251
Query: 245 MPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCL 304
MP +HS LL+WY+ +GL + E +V+ G L++F++K+ KR LPY+IDGVVYK+N
Sbjct: 252 MPDTHSGLLDWYESLGLPVNRERAVVQGAEGLLDFFRKVGEKREALPYDIDGVVYKVNRR 311
Query: 305 STQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITIT 364
Q +LGF SRAPRFALA+KF ++EA T++ AI +Q+GRTG ITPVA L+PV + G T+T
Sbjct: 312 DEQDRLGFVSRAPRFALAHKFPAQEARTRLVAIEVQVGRTGAITPVARLEPVFVGGATVT 371
Query: 365 RATLHNESEIYRKNIQIGDTVVVHRSGNVIPKI--------------------------- 397
ATLHNE E+ RK+I++GDTV+V R+G+VIP++
Sbjct: 372 NATLHNEDEVRRKDIRVGDTVIVRRAGDVIPEVVGRDGPHAMQVRVRFRGVRTVARRNRL 431
Query: 398 ----------TSSILSLRPNDSK--------------------IFKIPNICPICNSKIIY 427
T L+P D + F++P CP+C S+I
Sbjct: 432 RAAASSGRPMTWKPRLLKPTDRRGIRVRRGCLRPSLFEFVEQEPFRMPTECPVCGSRIER 491
Query: 428 IESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYK 487
+ IARC+G C AQRK L HF+ R+A++I GLG+K+I++LV N+V T DL+
Sbjct: 492 LPDEAIARCTGGLF-CPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNLVRTPADLFH 550
Query: 488 INFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLE 547
+ F L LDR + K A N+L +++K++ TT +RFIYALGIRHVGE+TAK+LA +F L+
Sbjct: 551 LGFATLAALDRFAEKSAQNLLDSLEKARHTTLARFIYALGIRHVGESTAKDLAKHFGALQ 610
Query: 548 CMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP--------- 598
+ A+ + LL + +G ++ +F + +R +I+QLR+ + W P
Sbjct: 611 PIMDASIDALLEVNDVGPVVAESLHQFFAEEHNRTVIAQLRE-KVDWPEGPPAPREPQGV 669
Query: 599 ------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNI 634
G KV +SK T+Y+V G + G KL KA +L I
Sbjct: 670 LAGKTVVLTGTLPTLSRDEAKALLEAAGAKVTGSVSKKTDYVVAGAEAGSKLAKAEELGI 729
Query: 635 KILDEKNFVKIVKGFS 650
+LDE +++KG S
Sbjct: 730 PVLDEDGMHQLLKGES 745
>gi|145589636|ref|YP_001156233.1| NAD-dependent DNA ligase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|190359270|sp|A4SYV5.1|DNLJ_POLSQ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|145048042|gb|ABP34669.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 671
Score = 596 bits (1536), Expect = e-167, Method: Compositional matrix adjust.
Identities = 297/667 (44%), Positives = 428/667 (64%), Gaps = 33/667 (4%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+ L+ R L+ EL R AYY+ DNP++ D +YD+L EL IE +P+ +T +SL+Q
Sbjct: 7 TNLADRYAFLQAELARLEHAYYVLDNPLLPDIEYDRLYRELLDIEAAHPQWVTSESLSQR 66
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + V H M+SL+N F D ++I F++R L + +++ Y ELKFDG+A+
Sbjct: 67 VGGTALKEFDSVTHAVPMLSLNNAFEDSELIAFDRRCREALHV-EHVAYAGELKFDGLAI 125
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+LRYE G L A+TRGDG GE++T NI I IPL L K PE+LEVR EV +Y KDF
Sbjct: 126 SLRYENGTLVTAATRGDGASGEDVTANIKTIRAIPLKLTGKNIPEILEVRGEVFMYLKDF 185
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHS 250
K+N+ LG K+F NPRNAAAG LRQL+ KI + L FFA+G+G L + +P +H
Sbjct: 186 EKMNRQAAELGEKEFANPRNAAAGSLRQLDSKITAKRPLSFFAYGLGALEPQSWLPKTHE 245
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
ELLN Y ++GL +C E VL V +++ FY +I KR +LPY+IDGVVYK+N + Q KL
Sbjct: 246 ELLNAYVELGLPVCSERRVLHSVEEILAFYNEIGAKRDSLPYDIDGVVYKVNSFAEQAKL 305
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF SRAPRFALA+K+ ++EALT + I++Q+GRTG ITPVA L PV + G+T+T ATLHN
Sbjct: 306 GFVSRAPRFALAHKYPAQEALTTVLGIDVQVGRTGAITPVARLAPVEVGGVTVTNATLHN 365
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
E E+ RK+++IGDTV V R+G+VIP++ S I RP+D+K F +P+ CP+C+S I +
Sbjct: 366 EDEVKRKDVRIGDTVSVRRAGDVIPEVVSVIKERRPSDAKEFVMPSRCPVCDSHIERLAD 425
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARCSG C AQRK L HF+ R+A++I GLG+K++++LV+ N+V T DLY++ F
Sbjct: 426 EAVARCSGGLF-CGAQRKQALIHFAHRRALDIEGLGEKIVDQLVDQNLVRTPADLYRLGF 484
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A+N++ AI +S+ TT +RFI+ALGIRHVGETTAK+LAN+++++ +
Sbjct: 485 TALANLERMGEKSADNLIQAINQSRNTTLARFIFALGIRHVGETTAKDLANHYQSMHALM 544
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
A+ E+LL + +G + F+ + +R +I QL G+
Sbjct: 545 DASVEELLTVKDVGPVVADSITSFMQEAHNREVIEQLLASGMQLSVEEKIISAAVFGKTF 604
Query: 595 --------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
+ K G KV +SK T+Y+V G G KL KA +L + ++DE+
Sbjct: 605 VLTGTFPTMTRDEAKDLLEKAGAKVAGSVSKKTDYVVAGTDAGSKLAKAEELGVPVIDEE 664
Query: 641 NFVKIVK 647
+ ++K
Sbjct: 665 EMLNLLK 671
>gi|171463268|ref|YP_001797381.1| NAD-dependent DNA ligase [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|254781389|sp|B1XTU0.1|DNLJ_POLNS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|171192806|gb|ACB43767.1| DNA ligase, NAD-dependent [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 671
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 299/667 (44%), Positives = 426/667 (63%), Gaps = 33/667 (4%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+ L+ R L+ EL R AYY+ DNP++ D +YD+L EL IE +PE +T +SL+Q
Sbjct: 7 TNLAERYAFLQAELARLEHAYYVLDNPLLPDIEYDRLYRELLDIEAVHPEWVTSESLSQR 66
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + V H M+SL+N F D ++I F++R E+ +++ Y ELKFDG+A+
Sbjct: 67 VGGAALKEFDSVTHAVPMLSLNNAFEDAELIAFDRRC-REVLHAEHMAYAGELKFDGLAI 125
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+LRYE G L A+TRGDG GE++T NI I IPL L K P++LEVR EV +Y KDF
Sbjct: 126 SLRYENGLLVTAATRGDGASGEDVTANIKTIRAIPLKLTRKNIPQVLEVRGEVFMYLKDF 185
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHS 250
K+N+ LG K+F NPRNAAAG LRQL+ KI + L FFA+G+G L + +P +H
Sbjct: 186 EKMNRQAAELGEKEFANPRNAAAGSLRQLDSKITAKRPLSFFAYGLGALEPQSWLPKTHE 245
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
ELLN Y ++GL +C E VL V +++ FY +I+ KR +LPY+IDGVVYK+N + Q KL
Sbjct: 246 ELLNAYIELGLPVCSERKVLHSVQEILAFYSEIDDKRDSLPYDIDGVVYKVNSFAEQAKL 305
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF SRAPRFALA+K+ ++EALT + I++Q+GRTG ITPVA L PV + G+T+T ATLHN
Sbjct: 306 GFASRAPRFALAHKYPAQEALTTVLGIDVQVGRTGAITPVARLAPVEVGGVTVTNATLHN 365
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
E EI RK+++IGDTV V R+G+VIP++ S I RP D+K F++P+ CP+C+S I +
Sbjct: 366 EDEIKRKDVRIGDTVSVRRAGDVIPEVVSVIKDRRPADAKEFQMPSRCPVCDSHIERLAD 425
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARCSG C AQRK L HF+ R+AM+I GLG+K++++LV+ N+V T DLY++ F
Sbjct: 426 EAVARCSGGLF-CGAQRKQALIHFAHRRAMDIEGLGEKIVDQLVDQNLVRTPADLYRLGF 484
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A+N++ AI +S+ TT +RFI+ALGIRHVGETTAK+LAN+++++ +
Sbjct: 485 TALANLERMGEKSADNLIKAINQSRNTTLARFIFALGIRHVGETTAKDLANHYQSMHALM 544
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
A E LL + +G + F+ + +R +I QL G+
Sbjct: 545 DAGVEDLLTVKDVGPVVADSITSFMQEAHNREVIEQLLASGMRLAVEEKVISAAVAGKTF 604
Query: 595 --------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
+ K G KV +SK T+Y+V G G KL KA +L + ++DE
Sbjct: 605 VLTGTFPTMTRDEAKDLLEKAGAKVAGSVSKKTDYVVAGTDAGSKLTKAEELGVPVIDEA 664
Query: 641 NFVKIVK 647
+ ++K
Sbjct: 665 AMLDLLK 671
>gi|313201136|ref|YP_004039794.1| DNA ligase, nad-dependent [Methylovorus sp. MP688]
gi|312440452|gb|ADQ84558.1| DNA ligase, NAD-dependent [Methylovorus sp. MP688]
Length = 689
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 278/683 (40%), Positives = 437/683 (63%), Gaps = 38/683 (5%)
Query: 1 MSFHAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYP 60
M +A + + ++ +L+++++ +N YY+ D+P + D++YD+L EL+ +E +P
Sbjct: 1 MFDNAPATVTSATPEVQIRQLREQINLYNYQYYVLDDPSVPDSEYDKLFRELQALEHAHP 60
Query: 61 ELLTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEY 120
ELLT DS TQ VG + V H M+SL+N F + ++ F+KRI + L + + +EY
Sbjct: 61 ELLTPDSPTQRVGASPLKAFASVQHRQAMLSLNNAFEESELTAFDKRIRDALGIAQ-VEY 119
Query: 121 IAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEV 180
E KFDG+A+ L YE G Q +TRGDG GE++++N+ I IP+ L ++ PP L+EV
Sbjct: 120 AVEPKFDGLAITLTYENGLFVQGATRGDGYTGEDVSSNLRTIRAIPMRLPVENPPALIEV 179
Query: 181 RCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL 240
R EVL+ K+DF KLN+ + G K F NPRNAAAG LRQL+P I + L FFA+G+G
Sbjct: 180 RGEVLMLKRDFDKLNRQQAERGEKLFANPRNAAAGSLRQLDPAITATRPLMFFAYGLGIA 239
Query: 241 RGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYK 300
G+ S+H+ +++ + L + + + G+ L+++Y +I R NLP++IDGVVYK
Sbjct: 240 EGVPQLSTHAAAMDYLASLRLPVSDQRDTVQGLAGLLDYYARIGAARPNLPFDIDGVVYK 299
Query: 301 INCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDG 360
+N ++ Q +LGF SRAPR+A+A+KF ++EALT+I+AI++Q+GRTG ITPVA LKPV + G
Sbjct: 300 VNSIAQQNELGFVSRAPRWAVAHKFPAQEALTEIQAIDVQVGRTGAITPVARLKPVFVGG 359
Query: 361 ITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFK----IPN 416
+T+T ATLHN+ EI RK++++GDTV V R+G+VIP++ + +L RP D+ ++ I +
Sbjct: 360 VTVTNATLHNQDEIDRKDVRVGDTVSVRRAGDVIPEVVAVVLEKRPADTVAYRLLEAINH 419
Query: 417 ICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNA 476
CP+C S +I E +ARC+G C AQRK + HF+SR+A++I GLG+K++++LV+
Sbjct: 420 QCPVCGSHVIRQEDEAVARCTGGLF-CSAQRKQAVLHFASRRAIDIEGLGEKLVDQLVDG 478
Query: 477 NIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTA 536
+ T D+Y+++ L LDR++ K A NIL A+Q SK TT +RFIYALGIR+VGE TA
Sbjct: 479 AHIHTLADIYRLDLATLSSLDRMAEKSAQNILDALQASKATTLARFIYALGIRNVGEATA 538
Query: 537 KELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN 596
K+LA YF +L+ + A EQL +P +G ++ +F+++P ++ +I L+DVG++W
Sbjct: 539 KDLARYFGSLQALLAADIEQLQQVPDVGPIVAESIRQFLSEPHNQQVIQDLQDVGLHWTE 598
Query: 597 NPN--------------------------------TKGGKVVNFISKNTNYLVKGQKPGK 624
+ GGKV +SK T+++V G++ G
Sbjct: 599 SDGAGTQQGVLTGKTLVLTGTLPTMSRDQAKALIEAAGGKVAGSVSKKTDFVVAGEEAGS 658
Query: 625 KLEKAIKLNIKILDEKNFVKIVK 647
KL KA +L + ++DE + +++
Sbjct: 659 KLTKAQELGVAVIDENGLLALLE 681
>gi|53803401|ref|YP_114852.1| NAD-dependent DNA ligase [Methylococcus capsulatus str. Bath]
gi|81681278|sp|Q604U8.1|DNLJ_METCA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|53757162|gb|AAU91453.1| DNA ligase, NAD-dependent [Methylococcus capsulatus str. Bath]
Length = 673
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 279/658 (42%), Positives = 419/658 (63%), Gaps = 33/658 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L++E+ HN+ YY D+P+I+D +YD+L+ EL IE +YPEL+T DS TQ VG E
Sbjct: 14 LREEIEFHNVRYYRLDDPLITDAEYDRLMAELLAIEARYPELVTPDSPTQRVGAPPVEAF 73
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
V H M+SL+N FS+ED+ F++R+ EL +EY+AE K DG+AVNL Y+ G L
Sbjct: 74 TEVRHEVPMLSLENAFSEEDLTAFDRRVRKELS-RDTLEYVAEPKLDGLAVNLLYQDGVL 132
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
+A+TRGDG +GE++T N+ + IPL L + P+ E R EV + K+ F+ LN+
Sbjct: 133 VRAATRGDGEVGEDVTHNVRAVRAIPLRLKGEDFPDRFEARGEVFMPKRGFLALNERARR 192
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIG 260
G K F NPRNAAAG LRQL+ ++ ++ L F+A+G+G +P++ ELL Q+ G
Sbjct: 193 SGEKTFVNPRNAAAGSLRQLDARVTASRPLSFYAYGIGAFPDARLPATQHELLESLQRWG 252
Query: 261 LSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFA 320
L + EY V+ G +E+Y+ + +R +LPY+IDGVVYK++ L Q LGF SRAPR+A
Sbjct: 253 LPVSPEYRVVRGAAGCLEYYRSLGERRHDLPYDIDGVVYKVDDLKAQAGLGFVSRAPRWA 312
Query: 321 LAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQ 380
+A+KF ++EA T++ I++Q+GRTG++TPVA L+PV + G+T+T ATLHN EI RK+++
Sbjct: 313 IAHKFPAEEARTRVVGIDVQVGRTGVLTPVARLEPVFVGGVTVTNATLHNADEIRRKDVR 372
Query: 381 IGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSW 440
GDTV+V R+G+VIP+I + LR ++ F++P +CP C S + ++ARCSG
Sbjct: 373 PGDTVIVRRAGDVIPEIVRVVPELRKPGAEPFRMPEVCPECGSAVEAEPGEVLARCSGG- 431
Query: 441 IECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS 500
+ C AQ K ++HF+SR+AM+I GLG K++++LV ++ T DLY+++ L LDR+
Sbjct: 432 LYCPAQHKESIKHFASRRAMDIEGLGDKLVDQLVGRKLIATVADLYRLDLDRLAGLDRMG 491
Query: 501 NKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNI 560
K A N+L A+++SK TT +RF+YALGIR VGE TAK L+ +F +LE + +ATEE+LL +
Sbjct: 492 EKSAANLLAALERSKRTTLARFLYALGIRDVGEVTAKVLSEHFGSLEALMEATEEELLAV 551
Query: 561 PKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN-NPNTK------------------ 601
+G + F QP +R +ISQL G+ W P +
Sbjct: 552 ADVGPVVSRHIRLFFAQPHNREVISQLLACGVSWEKPAPAPRKLPLQGLVFVLTGTLASM 611
Query: 602 ------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
G K +S+NT+++V G +PG KL+KA +L + +LDEK F+ +++
Sbjct: 612 SRDEARARLEALGAKCTGSVSRNTSFVVAGSEPGSKLDKASELGVPVLDEKGFLDLLE 669
>gi|253999028|ref|YP_003051091.1| NAD-dependent DNA ligase [Methylovorus glucosetrophus SIP3-4]
gi|253985707|gb|ACT50564.1| DNA ligase, NAD-dependent [Methylovorus glucosetrophus SIP3-4]
Length = 699
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 277/680 (40%), Positives = 436/680 (64%), Gaps = 38/680 (5%)
Query: 4 HAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELL 63
+A + F+ ++ +L+++++ +N YY+ D+P + D++YD+L EL+ +E +PELL
Sbjct: 14 NAPATVTFATPEVQIRQLREQINLYNYQYYVLDDPSVPDSEYDRLFRELQALEHAHPELL 73
Query: 64 TKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAE 123
T DS TQ VG + V H M+SL+N F + ++ F+KRI + L + + +EY E
Sbjct: 74 TPDSPTQRVGASPLKAFASVQHRQAMLSLNNAFEEGELTAFDKRIRDALGIAQ-VEYAVE 132
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
KFDG+A+ L YE G Q +TRGDG GE++++N+ I IP+ L ++ PP L+EVR E
Sbjct: 133 PKFDGLAITLTYENGLFVQGATRGDGYTGEDVSSNLRTIRAIPMRLPVENPPALIEVRGE 192
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL+ K+DF KLN+ + G K F NPRNAAAG LRQL+P I + L FFA+G+G G+
Sbjct: 193 VLMLKRDFDKLNRQQAERGEKLFANPRNAAAGSLRQLDPAITATRPLMFFAYGLGIAEGV 252
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
S+H+ +++ + L + + + G+ L+++Y +I R NLP++IDGVVYK+N
Sbjct: 253 PQLSTHAAAMDYLASLRLPVSDQRDTVQGLAGLLDYYTRIGAARPNLPFDIDGVVYKVNS 312
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
++ Q +LGF SRAPR+A+A+KF ++EALT+I+AI++Q+GRTG ITPVA LKPV + G+T+
Sbjct: 313 IAQQNELGFVSRAPRWAVAHKFPAQEALTEIQAIDVQVGRTGAITPVARLKPVFVGGVTV 372
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFK----IPNICP 419
T ATLHN+ EI RK++++GDTV V R+G+VIP++ + +L RP D+ ++ I + CP
Sbjct: 373 TNATLHNQDEIDRKDVRVGDTVSVRRAGDVIPEVVAVVLEKRPADTVAYRLLEAINHQCP 432
Query: 420 ICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIV 479
+C S +I E +ARC+G C AQRK + HF+SR+A++I GLG+K++++LV+ +
Sbjct: 433 VCGSHVIRQEDEAVARCTGGLF-CSAQRKQAVLHFASRRAIDIEGLGEKLVDQLVDGAHI 491
Query: 480 VTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKEL 539
T D+Y+++ L LDR++ K A NI+ A+ SK TT +RFIYALGIR+VGE TAK+L
Sbjct: 492 HTLADIYRLDLATLSSLDRMAEKSAKNIIKALDASKATTLARFIYALGIRNVGEATAKDL 551
Query: 540 ANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPN 599
A YF +L+ + A EQL +P +G ++ +F+++P ++ +I L+DVG++W +
Sbjct: 552 ARYFGSLQALLAADIEQLQQVPDVGPIVAESIRQFLSEPHNQQVIQDLQDVGLHWTESDG 611
Query: 600 --------------------------------TKGGKVVNFISKNTNYLVKGQKPGKKLE 627
GGKV +SK T+++V G++ G KL
Sbjct: 612 AGTQQGVLTGKTLVLTGTLPTMSRDQAKALIEAAGGKVAGSVSKKTDFVVAGEEAGSKLT 671
Query: 628 KAIKLNIKILDEKNFVKIVK 647
KA +L + +LDE + +++
Sbjct: 672 KAQELGVAVLDENGLLALLE 691
>gi|406939569|gb|EKD72561.1| hypothetical protein ACD_45C00641G0003 [uncultured bacterium]
Length = 670
Score = 589 bits (1518), Expect = e-165, Method: Compositional matrix adjust.
Identities = 299/665 (44%), Positives = 421/665 (63%), Gaps = 31/665 (4%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
K+ ++ +L+++++ HN YY+ D+P +SD +YD+L EL+++E+ YP+L+T DS TQ
Sbjct: 3 DKIESKINKLRQQINEHNYRYYVLDDPSVSDAEYDRLFRELQQLEQDYPQLITPDSPTQR 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
+G + V H M+SLDN F+D + I F++R+ L ++ IEY E K DG+AV
Sbjct: 63 IGATPLKAFAKVQHAIPMLSLDNAFTDNEAIAFDERVRERLSVSHLIEYSCEPKLDGLAV 122
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
++ YE G L +A+TRGDGN+GE+IT NI I +PL L P LEVR EV + KK F
Sbjct: 123 SIHYEKGVLVRAATRGDGNVGEDITENIRTIPTVPLRLLGDEYPSALEVRGEVYMPKKGF 182
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN+ G K F NPRNAAAG LRQL+ ++ + L F +G+G L+G SHS+
Sbjct: 183 NKLNRLAQEKGEKVFVNPRNAAAGSLRQLDSRVTAARPLEIFCYGIGVLQGEKNLESHSD 242
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
+L +K GL + E V++G+ + +Y++I+ KR +LPYEIDGVVYK+N L QKKLG
Sbjct: 243 ILMHLKKWGLRVSPEQEVVNGIKGCLVYYQRIHKKRADLPYEIDGVVYKVNKLIEQKKLG 302
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F SRAPR+A+A+KF ++E LT ++++ Q+GRTG +TPVA L+PV + G+TI+ ATLHN
Sbjct: 303 FVSRAPRWAIAHKFPAEEVLTTVESVEFQVGRTGALTPVARLRPVFVSGVTISNATLHNM 362
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
E+ RK+I IGDTVV+HR+G+VIP++ S I R D+K +P CPIC+SKI +IE
Sbjct: 363 DEVRRKDIHIGDTVVIHRAGDVIPEVVSVIKEHRSQDAKKIMLPAYCPICHSKIEHIEGE 422
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
IARCSG C AQRK ++HF+SR+AMNI GLG K++E+LV+ N V T DLY +
Sbjct: 423 AIARCSGGLF-CPAQRKEAIRHFASRRAMNIDGLGDKLVEQLVDNNRVSTVADLYSLTLI 481
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
L LDR++ K A N+L A+ KSK TT RF+YALGIR VGE TAK+LAN+F +L +
Sbjct: 482 PLANLDRMAEKSAQNLLDALDKSKQTTLERFLYALGIREVGEATAKQLANHFGDLSELAT 541
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------------- 594
A E+ L +P IG K + F + +R +I +L GI W
Sbjct: 542 ANEDILQTLPDIGPVVAKHIVTFFAEKHNRDVIDKLLKAGIVWKKIVKKIALPLSGKTFV 601
Query: 595 -------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
+ + K G KV +S TNY+V G+ PG KL KA KL + +L EK
Sbjct: 602 LTGTLTAMTREDAKEKLESLGAKVAGSVSSKTNYVVVGKDPGSKLAKAEKLGVPLLKEKE 661
Query: 642 FVKIV 646
F++ +
Sbjct: 662 FIRFL 666
>gi|456063598|ref|YP_007502568.1| DNA ligase, NAD-dependent [beta proteobacterium CB]
gi|455440895|gb|AGG33833.1| DNA ligase, NAD-dependent [beta proteobacterium CB]
Length = 656
Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust.
Identities = 292/658 (44%), Positives = 420/658 (63%), Gaps = 33/658 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
++ EL R AYY+ DNPI+ D++YD+L EL +IE +PE +T DSL+Q VG +
Sbjct: 1 MQTELARLEHAYYVLDNPIVPDSEYDRLYRELIEIEVSHPEWITSDSLSQRVGGAALKEF 60
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
V H M+SL+N F D ++I F++R L + + ++Y ELKFDG+A++LRYE+G L
Sbjct: 61 DSVTHAVPMLSLNNAFEDAELIAFDRRCREGLHIDQ-VDYAGELKFDGLAISLRYEHGSL 119
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
+A+TRGDG GE++T NI I IPL L+ P++LEVR EV +Y KDF K+N+
Sbjct: 120 VRAATRGDGASGEDVTANIKTIRAIPLKLSGDNIPKVLEVRGEVFMYLKDFQKMNEQAAA 179
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHSELLNWYQKI 259
G K+F NPRNAAAG LRQL+ KI + L FFA+G+G L + +P +H ELLN Y K+
Sbjct: 180 QGEKEFANPRNAAAGSLRQLDSKITAKRPLSFFAYGLGALEPQSWLPKTHEELLNAYVKL 239
Query: 260 GLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRF 319
GL +C E VL V +++ FY ++ KR LPY+IDGVVYK+N + Q KLGF SRAPRF
Sbjct: 240 GLPVCSERRVLKSVEEILAFYNEVGAKRDELPYDIDGVVYKVNSFAEQAKLGFVSRAPRF 299
Query: 320 ALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNI 379
ALA+KF ++EALT + I++Q+GRTG ITPVA L PV + G+T+T ATLHNE E+ RK++
Sbjct: 300 ALAHKFPAQEALTTVLGIDVQVGRTGAITPVARLSPVEVGGVTVTNATLHNEDEVKRKDV 359
Query: 380 QIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGS 439
+IGDTV V R+G+VIP++ S + RP + F +P CP+C+S I + +ARCSG
Sbjct: 360 RIGDTVSVRRAGDVIPEVVSVVKERRPVGATEFVMPKNCPVCDSHIERLADEAVARCSGG 419
Query: 440 WIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRV 499
C AQRK L HF+ R+A++I GLG+K++++LV+ N+V T DLY++ F + L+R+
Sbjct: 420 LF-CGAQRKQALIHFAHRRALDIEGLGEKIVDQLVDHNLVRTPADLYRLGFTAIANLERM 478
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
K A+N++ AI +S+ TT +RFI+ALGIRHVGETTAK+LAN+++++ + A+ E LL
Sbjct: 479 GEKSADNLIAAINQSRNTTLARFIFALGIRHVGETTAKDLANHYQSMHALMDASLEDLLT 538
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------L 595
+ +G + F+ + +R +I QL G+ +
Sbjct: 539 VKDVGPVVANSITSFMEEAHNREVIEQLLASGMQLSVEEKVISAAVAGKTFVLTGTFPTM 598
Query: 596 NNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
K G KV +SK T+Y+V G G KL KA +L + ++DE V ++K
Sbjct: 599 TRDQAKDLLEKAGAKVAGSVSKKTDYVVAGADAGSKLTKAEELGVPVIDEVAMVDLLK 656
>gi|257095174|ref|YP_003168815.1| NAD-dependent DNA ligase [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257047698|gb|ACV36886.1| DNA ligase, NAD-dependent [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 675
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 275/666 (41%), Positives = 423/666 (63%), Gaps = 33/666 (4%)
Query: 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG 73
+S R+ L+ E+ R++ YY+ D P I+D YD+L EL+ +E ++PEL+++DS TQ VG
Sbjct: 3 VSERLHSLRAEIERYDHEYYVLDAPSIADADYDRLFRELQALEAEHPELVSRDSPTQRVG 62
Query: 74 LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNL 133
V H M+SL+N F+D++V F++R+ L ++Y AE KFDG+AV L
Sbjct: 63 GAPLAEFAAVTHATAMLSLNNAFADDEVAAFDRRVREGLATDGEVDYSAEPKFDGLAVGL 122
Query: 134 RYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIK 193
Y G L +TRGDG+ GEN+T N+ + +PL L P LEVR EVL+++ DF +
Sbjct: 123 SYAKGILVCGATRGDGSTGENVTANLRTLRSVPLRLRASDWPAALEVRGEVLMWRSDFER 182
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253
LN + G K+F NPRNAAAG LRQL+P+I + L FFA+G+ +P++HS L
Sbjct: 183 LNARQREKGEKEFVNPRNAAAGGLRQLDPRITAQRPLRFFAYGIASGERAGLPATHSAQL 242
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
+ ++ G + E ++G+ L+ +Y + +R +LPY+IDGVVYK++ L+ Q++LGF
Sbjct: 243 DQLERWGFPVARERRRVTGLAGLLAYYADMGSRRASLPYDIDGVVYKLDDLAAQERLGFL 302
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
SRAPRFA+A+KF ++EA+T++ I+IQ+GRTG +TPVA L PV + G+T+ ATLHNE E
Sbjct: 303 SRAPRFAVAHKFPAEEAVTELLDISIQVGRTGALTPVARLAPVFVGGVTVNNATLHNEDE 362
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
I RKN++IGD VVV R+G+VIP++ + RP ++ F +P CP+C S+++ +
Sbjct: 363 IRRKNVRIGDVVVVRRAGDVIPEVVRVVPDRRPAGAREFVMPTSCPVCGSRVVRSADEAV 422
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
ARCSG + C AQRK L HF+SR+A++I GLG K++E+LV++ IV T DLY++ L
Sbjct: 423 ARCSGG-LYCPAQRKQALLHFASRRALDIEGLGDKLVEQLVDSAIVRTPGDLYRLGLLAL 481
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
L+R+++K A N+L AI++SK TT +RFI+ALGIR+VGE TA+ELA +F +L+ + A
Sbjct: 482 ASLERMADKSAGNLLAAIERSKRTTLARFIFALGIRNVGEATARELARHFGSLDRLLAAD 541
Query: 554 EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNN---------------- 597
E+ L +P +G T ++ +F ++P + +I QLR G+ W
Sbjct: 542 EDSLRQVPDVGPTVAQSIRQFCSEPHNLEVIEQLRAAGLVWSEGEPAVPAGGVFAGQVFV 601
Query: 598 -----PN-----------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
P+ GGKV +SK T+++V G + G KLE+A++L ++++DE
Sbjct: 602 LTGTLPSLTREAAKAMIEAAGGKVSGSVSKKTSFVVAGAEAGSKLERALQLGVQVIDEGQ 661
Query: 642 FVKIVK 647
+ +++
Sbjct: 662 LLGLLE 667
>gi|421750050|ref|ZP_16187362.1| NAD-dependent DNA ligase, partial [Cupriavidus necator HPC(L)]
gi|409770970|gb|EKN53429.1| NAD-dependent DNA ligase, partial [Cupriavidus necator HPC(L)]
Length = 643
Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust.
Identities = 275/593 (46%), Positives = 382/593 (64%), Gaps = 15/593 (2%)
Query: 15 SFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGL 74
+ R L++++ HN YY+ D P I D +YD L EL+++E +PELL+ +S TQ VG
Sbjct: 45 AARADWLREQIEHHNYQYYVLDAPTIPDAEYDALFGELQELEAAHPELLSPESPTQRVGG 104
Query: 75 VGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-------------KNIEYI 121
V H M+SL+N F D+DVI F++R L T +EY
Sbjct: 105 QPLTAFATVRHRLPMLSLNNAFDDDDVIGFDRRCAQGLGRTVAAEGTADLFSAADAVEYA 164
Query: 122 AELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVR 181
ELKFDG+A++LRYE G L QA+TRGDG GE++T N+ I IPL L P ++EVR
Sbjct: 165 CELKFDGLAMSLRYENGRLVQAATRGDGETGEDVTANVRTIKAIPLKLKAGAP-AVIEVR 223
Query: 182 CEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELR 241
EV +Y++DF KLN + G K F NPRNAAAG LRQL+P+I + L FFA+G+GEL
Sbjct: 224 GEVFMYRRDFDKLNARQAEAGEKTFVNPRNAAAGSLRQLDPRITARRPLSFFAYGLGELD 283
Query: 242 GMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKI 301
G P++H LL + +GL +C E V+ G L+ FY+ + KR +LPY+IDGVVYK+
Sbjct: 284 GEPRPATHEALLKRFAALGLPVCAERDVVKGAQGLLGFYRGVGAKRDSLPYDIDGVVYKV 343
Query: 302 NCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGI 361
N + Q++LGF SRAPRFALA+KF ++E T ++ I +Q+GRTG ITPVA L PV + G+
Sbjct: 344 NAVEEQERLGFVSRAPRFALAHKFPAQEMTTVVEDIEVQVGRTGAITPVARLSPVFVGGV 403
Query: 362 TITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPIC 421
T+T ATLHNE EI RK++ IGDTV+V R+G+VIP++ + + RP D++ F +P CP+C
Sbjct: 404 TVTNATLHNEDEIRRKDVHIGDTVIVRRAGDVIPEVVAVVPERRPADARPFTMPAACPVC 463
Query: 422 NSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVT 481
S I +E IARC+G I C AQRK L HF+ R+AM+I GLG+K++++LV IV T
Sbjct: 464 GSNIERLEDEAIARCTGGLI-CAAQRKQALLHFAQRRAMDIEGLGEKVVDQLVEQGIVRT 522
Query: 482 AVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELAN 541
DLYK+ L LDR+++K A N++ AI S+ TT +RFI+ALGIRHVGE TAK+LA
Sbjct: 523 PADLYKLGVAKLAALDRMADKSAGNLVAAIDASRATTLNRFIFALGIRHVGEATAKDLAR 582
Query: 542 YFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW 594
+F L+ + A E LL + +G ++ F + + +I QLR G++W
Sbjct: 583 HFGKLDGLMAADEAALLEVNDVGPVVAQSIAHFFAEAHNVEVIEQLRAAGVHW 635
>gi|422323059|ref|ZP_16404099.1| DNA ligase [Achromobacter xylosoxidans C54]
gi|317401960|gb|EFV82562.1| DNA ligase [Achromobacter xylosoxidans C54]
Length = 699
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 289/683 (42%), Positives = 420/683 (61%), Gaps = 59/683 (8%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+ E+ +HN+ YY+YD+P ISD +YD+L+ EL+ +E +PEL+T +S TQ VG
Sbjct: 16 LRAEIEQHNVRYYVYDDPSISDAEYDRLMRELQDLEAAHPELVTPESPTQRVGAAPVSAF 75
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK------LTKNIEYIAELKFDGIAVNLR 134
V H M+SL N F +EDV+ F++R+T+ L+ + EY ELK DG+A++LR
Sbjct: 76 GSVRHAVPMLSLGNAFDEEDVVAFDRRVTDTLRGAGLLGPAQQAEYFCELKLDGLAISLR 135
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194
YE G L QA+TRGDG GE++T+NI I IPL L+ P ++LEVR EVL+ + DF KL
Sbjct: 136 YEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLSGPAP-KVLEVRGEVLMNRADFEKL 194
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM----------- 243
N + K F NPRNAAAG LRQL+P+I + L FFA+G GE+RG+
Sbjct: 195 NAAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEVRGLPGTQSGLFDEA 254
Query: 244 --------NMPS-SHSELLNWYQKIGLSICGEYS-VLSGVNKLIEFYKKINIKRFNLPYE 293
+P SH +L+W +GL + +++ +G L+ FY K+ R LPY+
Sbjct: 255 SAGAADASTLPEKSHGAMLDWLASLGLPVNVKHNHRATGAEGLMAFYAKVGALRPELPYD 314
Query: 294 IDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALL 353
IDGVVYK++ L QK LGF +RAPRFALA+KF ++EA T + I +Q+GRTG ITPVA L
Sbjct: 315 IDGVVYKVDSLPAQKLLGFVARAPRFALAHKFPAEEATTTLLDIEVQVGRTGAITPVARL 374
Query: 354 KPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFK 413
KPV + G+T+T ATLHNE EI RK+++IGDTV+V R+G+VIP++ ++L RP D++ F
Sbjct: 375 KPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVVGAVLEKRPADAREFV 434
Query: 414 IPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKL 473
+P CP+C S I +E IARC+G C AQRK L H +SRKA++I GLG+K++E+L
Sbjct: 435 MPKACPVCGSAIERLEDETIARCTGGLF-CAAQRKQTLWHAASRKALDIEGLGEKLVEQL 493
Query: 474 VNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGE 533
V++ V + DL+ + L+ LDR+ K A+N++ AI K++ R ++ALGIRHVGE
Sbjct: 494 VDSGRVKSLADLFSLRPLELVGLDRMGQKSADNLVEAIDKARAPALGRLLFALGIRHVGE 553
Query: 534 TTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIY 593
TTA+++A +F ++E + A E+ L ++P +G + +F + +R +I QL+ G++
Sbjct: 554 TTARDVARHFGSIEAIMDADEDALSSVPDVGPVVAGSIRRFFAEQHNRDVIGQLKAQGVH 613
Query: 594 WLNN-------------------PN-----------TKGGKVVNFISKNTNYLVKGQKPG 623
+ PN GGKV +SK T YLV G+ G
Sbjct: 614 AVAEAVPQDTTLAGKTFVLTGTLPNWTREEASMRIQAAGGKVSGSVSKKTAYLVAGEDAG 673
Query: 624 KKLEKAIKLNIKILDEKNFVKIV 646
KL KA +L + +LDE +++
Sbjct: 674 SKLTKAQELGVTVLDEDGLKELL 696
>gi|406915741|gb|EKD54793.1| hypothetical protein ACD_60C00044G0012 [uncultured bacterium]
Length = 671
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 287/660 (43%), Positives = 419/660 (63%), Gaps = 32/660 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ +++ HN YY D+P +SD +YD L EL ++E++YPE +T DS TQ VG+
Sbjct: 12 KINKLRDKINEHNYRYYALDDPTVSDAEYDSLFQELSELEKQYPEWITLDSPTQRVGVTP 71
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL+N F+++++ F++R+ + L ++ IEY E K DG+AV++RYE
Sbjct: 72 LKKFVEVSHEIPMLSLENAFTEDELAAFDERVRDRLGVSHLIEYSCEPKLDGLAVSIRYE 131
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+IT N+ I +PL L+ P++LEVR EV + KK F ++N+
Sbjct: 132 KGILVRAATRGDGETGEDITENVRTIQTVPLRLHGADYPKVLEVRGEVYMPKKGFDEMNR 191
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ ++ + L F +G+G + G N+PSSHSE+L
Sbjct: 192 RALEKGEKIFVNPRNAAAGSLRQLDSRMTAARPLEIFCYGIGAVEG-NIPSSHSEILAAL 250
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL I E V+ GV++ + +Y+ I+ KR LPYEIDGVVYK+N ++ Q KLGF SRA
Sbjct: 251 KKWGLRINSERKVVRGVDECLAYYQMISEKRSKLPYEIDGVVYKVNSIAEQNKLGFVSRA 310
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++A+ Q+GRTG +TPVA L PV + G+TI+ ATLHN E+ R
Sbjct: 311 PRWAIAHKFPAEEVMTVVEAVEFQVGRTGALTPVARLHPVFVGGVTISNATLHNMDEVIR 370
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K++ IGDTVV+ R+G+VIP+I ++ RP +K ++P CP+C+SKI +IE +ARC
Sbjct: 371 KDVHIGDTVVIRRAGDVIPEIVKAVKEHRPPHAKKIELPLDCPVCHSKIEHIEGEAVARC 430
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG C AQRK ++HF+SR AM+I GLG K++E+LV+ N+V T DLY +N + L L
Sbjct: 431 SGGLF-CQAQRKEAIKHFASRHAMDIEGLGDKLVEQLVDKNLVSTVADLYSLNLEELSNL 489
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR++ K A N+L A++KSK TT RF+YALGIR VGE TAK+LAN+F +L + A +
Sbjct: 490 DRMAEKSAQNLLDALEKSKKTTLPRFLYALGIREVGEATAKQLANHFGDLSALISADAGE 549
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL--------------------- 595
L + +G + + F + +R +I L GIYW
Sbjct: 550 LQTVSDVGPVVAQHIVSFFEEKHNRTVIDHLLKAGIYWQKITKKESLPFAGKTFVLTGTL 609
Query: 596 ---------NNPNTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
T G KV +S T Y+V G G KL+KA +L IKIL EK ++++
Sbjct: 610 HSMSRDVAKEKLETLGAKVSGSVSSKTTYVVAGDDAGSKLKKAKELGIKILTEKELIELL 669
>gi|423016187|ref|ZP_17006908.1| DNA ligase [Achromobacter xylosoxidans AXX-A]
gi|338780713|gb|EGP45114.1| DNA ligase [Achromobacter xylosoxidans AXX-A]
Length = 701
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 287/678 (42%), Positives = 416/678 (61%), Gaps = 61/678 (8%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+ E+ +HN+ YY+YD+P ISD +YD+++ EL+ +E +PEL+T +S TQ VG
Sbjct: 16 LRAEIEQHNVRYYVYDDPSISDAEYDRMMRELQDLEAAHPELVTPESPTQRVGAAPVSAF 75
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK------LTKNIEYIAELKFDGIAVNLR 134
V H M+SL N F +EDV+ F++R+T+ L+ + EY ELK DG+A++LR
Sbjct: 76 GSVRHAVPMLSLGNAFDEEDVVAFDRRVTDTLRGAGLLGPAQQAEYFCELKLDGLAISLR 135
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194
YE G L QA+TRGDG GE++T+NI I IPL L P ++LEVR EVL+ + DF KL
Sbjct: 136 YEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLTGPAP-KVLEVRGEVLMNRADFEKL 194
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM----------- 243
N + K F NPRNAAAG LRQL+P+I + L FFA+G GE++G+
Sbjct: 195 NAAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEVQGLPGAQSGLFDEA 254
Query: 244 ----------NMPS-SHSELLNWYQKIGLSICGEYS-VLSGVNKLIEFYKKINIKRFNLP 291
+P SH +L+W +GL + +++ +G L+ FY K+ R LP
Sbjct: 255 PAGATDAAAATLPEKSHGAMLDWLAALGLPVNVKHNHRATGAEGLMAFYAKVGALRPELP 314
Query: 292 YEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVA 351
Y+IDGVVYK++ L QK LGF +RAPRFALA+KF ++EA T + I +Q+GRTG ITPVA
Sbjct: 315 YDIDGVVYKVDSLPAQKLLGFVARAPRFALAHKFPAEEATTTLLDIEVQVGRTGAITPVA 374
Query: 352 LLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKI 411
LKPV + G+T+T ATLHNE EI RK+++IGDTV+V R+G+VIP++ ++L RP D++
Sbjct: 375 RLKPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVVGAVLDQRPADARE 434
Query: 412 FKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIE 471
F +P CP+C S I +E IARC+G C AQRK L H +SRKA++I GLG+K++E
Sbjct: 435 FVMPKACPVCGSAIERLEDETIARCTGGLF-CAAQRKQTLWHAASRKALDIEGLGEKLVE 493
Query: 472 KLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHV 531
+LV++ V + DL+ + L+ LDR+ K A+N++ AI K++ R ++ALGIRHV
Sbjct: 494 QLVDSGRVKSLADLFSLRPLELVGLDRMGQKSADNLVEAIDKARAPALGRLLFALGIRHV 553
Query: 532 GETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG 591
GETTA+++A +F ++E + A E+ L ++P +G + +F + +R +I QL+ G
Sbjct: 554 GETTARDVARHFGSIEAIMDADEDALSSVPDVGPVVAGSIRRFFAEQHNRDVIDQLKAQG 613
Query: 592 IYWLNN-------------------PN-----------TKGGKVVNFISKNTNYLVKGQK 621
++ + PN GGKV +SK T YLV G+
Sbjct: 614 VHPVAEAVPQDTTLAGKTFALTGTLPNWTREEASMRIQAAGGKVSGSVSKKTAYLVAGED 673
Query: 622 PGKKLEKAIKLNIKILDE 639
G KL KA +L + +LDE
Sbjct: 674 AGSKLTKAQELGVTVLDE 691
>gi|33594429|ref|NP_882073.1| DNA ligase [Bordetella pertussis Tohama I]
gi|384205726|ref|YP_005591465.1| DNA ligase [Bordetella pertussis CS]
gi|408416511|ref|YP_006627218.1| DNA ligase [Bordetella pertussis 18323]
gi|81424006|sp|Q7VRX7.1|DNLJ_BORPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|33564504|emb|CAE43819.1| DNA ligase [Bordetella pertussis Tohama I]
gi|332383840|gb|AEE68687.1| DNA ligase [Bordetella pertussis CS]
gi|401778681|emb|CCJ64124.1| DNA ligase [Bordetella pertussis 18323]
Length = 696
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 283/682 (41%), Positives = 418/682 (61%), Gaps = 60/682 (8%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ L+ E+ +HNI YY++D+P + D +YD L+ +L+ +E ++PEL+T DS TQ VG
Sbjct: 12 IARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELVTPDSPTQRVGAAPL 71
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK------LTKNIEYIAELKFDGIAV 131
V H M+SL N F +EDV F+KR+ + L+ L + +EY ELK DG+A+
Sbjct: 72 AEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEYFCELKLDGLAI 131
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+LRYE G L QA+TRGDG GE++T NI I +PL L+ P +LEVR EVL+ + +F
Sbjct: 132 SLRYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLHGA--PRVLEVRGEVLMNRAEF 189
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM--NMPS-- 247
+LN+ + G K F NPRNAAAG LRQL+P+I + L FFA+ GE+ G+ MP+
Sbjct: 190 ERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLPEGMPTRF 249
Query: 248 ----------------SHSELLNWYQKIGLSICGEYSVLS-GVNKLIEFYKKINIKRFNL 290
+H +L+W ++GL + ++ G + L+ FY++I R +L
Sbjct: 250 DEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYERIGKLRADL 309
Query: 291 PYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPV 350
PY+IDGVVYK++ L +Q+ LGF +RAPRFALA+KF ++EA+T++ I +Q+GRTG ITPV
Sbjct: 310 PYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQVGRTGAITPV 369
Query: 351 ALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSK 410
A L PV + G+T+T ATLHNE EI RK+++IGDTV+V R+G+VIP++ +L RP D++
Sbjct: 370 ARLAPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVVGPVLEKRPADAR 429
Query: 411 IFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMI 470
F + CPIC S I ES IARC+G C AQRK L H + RKA++I GLG+K+I
Sbjct: 430 EFVMLTACPICGSAIERPESEAIARCTGGLF-CAAQRKQTLLHAAGRKALDIEGLGEKLI 488
Query: 471 EKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRH 530
++LV+A+ V + D+Y + L L+R+ K A N++ AI +++ R ++ALGIRH
Sbjct: 489 DQLVDADRVKSLADIYSLTAFELAALERMGKKSAENLVAAIDQARRPALGRLLFALGIRH 548
Query: 531 VGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDV 590
VGETTA+++A +F ++E + A+EE LL +P +G + +F +P +R ++ QL
Sbjct: 549 VGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQ 608
Query: 591 GIY-------------------------WLNNPNTK-----GGKVVNFISKNTNYLVKGQ 620
G++ W + T+ GGKV +SK T YLV G+
Sbjct: 609 GVHPQAEAEPEGTSLAGKTFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYLVTGE 668
Query: 621 KPGKKLEKAIKLNIKILDEKNF 642
G KL KA +L + +LDE
Sbjct: 669 DAGSKLTKAQELGVPVLDEDGL 690
>gi|226941791|ref|YP_002796865.1| DnlJ [Laribacter hongkongensis HLHK9]
gi|254781355|sp|C1D4R5.1|DNLJ_LARHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|226716718|gb|ACO75856.1| DnlJ [Laribacter hongkongensis HLHK9]
Length = 692
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 279/675 (41%), Positives = 418/675 (61%), Gaps = 54/675 (8%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L+ LHR+N YY+ D P + D +YD+L EL+ +E +PEL + DS T+ VG
Sbjct: 9 RAAGLRALLHRYNHEYYVLDAPSVPDAEYDRLFRELEALEAAHPELASADSPTRRVGGAP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSD----------EDVIIFNKRITNELKLTKNIEYIAELKF 126
V H M+SL+N FSD ++ F++R+ + L L + +EY E KF
Sbjct: 69 LAAFASVTHRLPMLSLNNVFSDMQDSDPAGRHAELAAFDQRVRDGLGLDE-VEYAVEPKF 127
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVL------NIKYP---PEL 177
DG+AV+L YE+G L Q +TRGDG GEN+T N+ + IPL L ++ P P
Sbjct: 128 DGLAVSLVYEHGVLVQGATRGDGETGENVTENLRTVRSIPLRLENAPGDDLFAPAVVPAR 187
Query: 178 LEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGV 237
LEVR EVL+ K+DF +LN + GLK+F NPRNAAAG LRQL+ +I ++ L FFA+ V
Sbjct: 188 LEVRGEVLMLKRDFERLNSEQDAAGLKRFANPRNAAAGSLRQLDSRITASRRLTFFAYAV 247
Query: 238 GELRGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGV 297
E G+++P++HS ++W +GL + + SV+ G+ L Y+ + +R LP++IDGV
Sbjct: 248 AEADGVSLPATHSATMDWLAGLGLPVSRQRSVVRGLAGLTGAYEAMLAQRAGLPFDIDGV 307
Query: 298 VYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVL 357
VYK+N LS Q +LGF SRAPRFA+A+KF ++EALT ++ I +Q+GRTG ITPVA L+PV
Sbjct: 308 VYKVNRLSEQARLGFVSRAPRFAVAHKFPAEEALTVVEDITVQVGRTGAITPVARLQPVF 367
Query: 358 IDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNI 417
+ G+T+T ATLHNE E+ RK++ +GDTV+V R+G+VIP++ S + RP ++ F++P +
Sbjct: 368 VGGVTVTNATLHNEDEVRRKDVHVGDTVIVRRAGDVIPEVVSVLAERRPPQARAFEMPLV 427
Query: 418 CPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNAN 477
CP+C S I+ +ARCSG + C AQ K LQHF+SRKA+++ GLG+K++++LV+A
Sbjct: 428 CPVCGSHIVREADEAVARCSGG-LYCSAQHKQALQHFASRKALDVEGLGEKLVDQLVDAG 486
Query: 478 IVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAK 537
+V T DL+ ++ L RL+R+ +K A N++ A+ + TT +RF+YALGIR+VGE TA+
Sbjct: 487 LVHTPADLFALDQPALARLERMGDKSAENLVRALDACRHTTLARFVYALGIRNVGEATAR 546
Query: 538 ELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--- 594
+LA +F L+ + A ++ L+ P +G ++ + F + +R ++ L G+ W
Sbjct: 547 DLARHFGTLDALMAADQDMLMTAPDVGPIVARSIVDFFAEAHNREVVDALLAAGVSWPVV 606
Query: 595 ------------------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGK 624
L + K GGKV +SK T+Y+V G+ G
Sbjct: 607 ETVTSAGVAGVSGKTFVLTGTLPTLGRDDAKARIEAAGGKVTGSVSKKTHYVVAGEAAGS 666
Query: 625 KLEKAIKLNIKILDE 639
KL+KA +L I +LDE
Sbjct: 667 KLDKAHELGITVLDE 681
>gi|220935192|ref|YP_002514091.1| DNA ligase (NAD(+)) [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|254781444|sp|B8GTL0.1|DNLJ_THISH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|219996502|gb|ACL73104.1| DNA ligase (NAD(+)) [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 675
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 273/668 (40%), Positives = 409/668 (61%), Gaps = 35/668 (5%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
K+ RV L+ EL HN YY+ D+P I D YD L+ EL+ +E KYPEL+T DS TQ V
Sbjct: 7 KVRKRVASLRDELDYHNHRYYVLDDPEIPDAAYDALMRELQDLEAKYPELVTPDSPTQRV 66
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
G + + H M+SLDN F + DV+ F KRI + L IE+ E K DG+A++
Sbjct: 67 GGAPLKAFEEARHLLPMLSLDNAFEEADVLAFEKRIRDRLGEESEIEFAVEPKLDGLAIS 126
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
L YE G+L + +TRGDG GE++T N+ I IPL L + P+LLEVR EV + + F
Sbjct: 127 LLYEDGHLVRGATRGDGATGEDVTANVRTIRAIPLRLQGRGWPKLLEVRGEVYMDRAGFE 186
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
N+ G K F NPRNAAAG LRQL+ +I + L FFA+G G + G +P +H+ +
Sbjct: 187 AFNREAASRGEKVFVNPRNAAAGSLRQLDSRITAKRPLTFFAYGAGHVEGGELPDTHAAV 246
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
L+ + G +C E V++G +E+Y++I +R LPY+IDGVVYK+N Q++LGF
Sbjct: 247 LDALAEWGQRVCPERDVVTGAAGCLEYYRRIGERRDGLPYDIDGVVYKVNRFELQQRLGF 306
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
SRAPR+A+A+K+ ++E +T ++ + Q+GRTG +TPVA L+PV + G+T++ ATLHN
Sbjct: 307 VSRAPRWAIAHKYPAQEQMTLLRDVEFQVGRTGALTPVARLEPVFVGGVTVSNATLHNMD 366
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
E+ RK+++IGDTV+V R+G+VIP++ + +LS RP++++ +P CP+C S+I+ E
Sbjct: 367 EVERKDVRIGDTVIVRRAGDVIPEVAAVVLSRRPHNARHVVMPTHCPVCGSEIVRSEGEA 426
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
+ARCSG + C AQR+ ++HF+SR+AM+I GLG K++E+LV+A +V LY++ +
Sbjct: 427 VARCSGG-LYCAAQRREAIKHFASRRAMDIEGLGDKLVEQLVDAGLVDHVDGLYRLTAEQ 485
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
L L+R+ K A+N++ A++KSK T +RFI+ALGIR VGE TA+ LA +F L+ + A
Sbjct: 486 LAGLERMGEKSAHNLVDALEKSKHTQLARFIFALGIREVGEATARALAIHFGGLDALMAA 545
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
EE L+ +P +G F QP +R +I LR+ G++W +
Sbjct: 546 DEEALMQVPDVGPVVAHHVATFFQQPHNREVIDALREAGVHWEESEPAALQAEDLPLSGN 605
Query: 602 -----------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
G KV +SK T ++ G+ G KL KA KL + +L
Sbjct: 606 TYVLTGALESMTREEAGDRLMALGAKVSGSVSKKTTAVIAGEAAGSKLAKAEKLGVPVLS 665
Query: 639 EKNFVKIV 646
E F++++
Sbjct: 666 EAEFLELI 673
>gi|293603951|ref|ZP_06686365.1| NAD-dependent DNA ligase LigA [Achromobacter piechaudii ATCC 43553]
gi|292817644|gb|EFF76711.1| NAD-dependent DNA ligase LigA [Achromobacter piechaudii ATCC 43553]
Length = 700
Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust.
Identities = 289/687 (42%), Positives = 424/687 (61%), Gaps = 60/687 (8%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+ EL +HN+ YY+YD P ISD +YD L+ +L+ +E ++PEL+T +S TQ VG
Sbjct: 17 LRAELEQHNVRYYVYDEPSISDAEYDGLMRQLEALEAEHPELITPESPTQRVGAAPVSAF 76
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK------LTKNIEYIAELKFDGIAVNLR 134
V H M+SL+N F++E+V+ F++R+T+ L+ + +Y ELK DG+A++LR
Sbjct: 77 GSVSHAVPMLSLNNAFAEEEVVAFDRRVTDTLRGAGLLGPAQQADYFCELKLDGLAISLR 136
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194
YE G L QA+TRGDG GE++T+NI I IPL L P++LEVR EVL+ + DF KL
Sbjct: 137 YEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLK-GAAPKVLEVRGEVLMNRADFEKL 195
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM----------- 243
N+ + K F NPRNAAAG LRQL+P+I + L FFA+G GE++G+
Sbjct: 196 NEAQARRDEKIFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEVQGLPGKQSGLFDEA 255
Query: 244 --------NMPS-SHSELLNWYQKIGLSICGEY-SVLSGVNKLIEFYKKINIKRFNLPYE 293
+P SH +L W ++GL + ++ +G L+ FY K+ R +LPY+
Sbjct: 256 TAGAGQASQLPEKSHGAMLAWLHELGLPVNLKHNDRATGAEGLMAFYAKVGELRASLPYD 315
Query: 294 IDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALL 353
IDGVVYK++ L QK LGF +RAPRFALA+KF ++EA T + I +Q+GRTG ITPVA L
Sbjct: 316 IDGVVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEATTTLLDIEVQVGRTGAITPVARL 375
Query: 354 KPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFK 413
KPV + G+T+T ATLHNE EI RK+++ GDTV+V R+G+VIP++ +L RP+D++ F
Sbjct: 376 KPVFVGGVTVTNATLHNEDEIRRKDVRKGDTVIVRRAGDVIPEVLGPVLEKRPDDAQQFV 435
Query: 414 IPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKL 473
+P CP+C S I +E IARC+G C AQRK L H +SRKA++I GLG+K++++L
Sbjct: 436 MPTACPVCGSAIERLEDETIARCTGGLF-CAAQRKQTLWHAASRKALDIEGLGEKLVDQL 494
Query: 474 VNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGE 533
V++ V T DLY + L+ LDR+ K A+N++ AI K++ +R ++ALGIRHVGE
Sbjct: 495 VDSGRVKTLADLYSLRPLELVGLDRMGQKSADNLVAAIDKARAPALNRLLFALGIRHVGE 554
Query: 534 TTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIY 593
TTA+++A +F +++ + A EE L ++P +G + +F + +R +I QL+ G+
Sbjct: 555 TTARDVARHFGSIDAIMDADEEALSSVPDVGPVVAASIRRFFAEQHNRDVIEQLKAQGVN 614
Query: 594 WLNN-------------------PN-----------TKGGKVVNFISKNTNYLVKGQKPG 623
+ PN GGKV +SK T YLV G++ G
Sbjct: 615 PVAEAAPQGTTLAGKTFVLTGTLPNWTREEASMHIQAAGGKVTGSVSKKTAYLVAGEEAG 674
Query: 624 KKLEKAIKLNIKILDEKNFVKIVKGFS 650
KL KA +L + +LDE + +K + G S
Sbjct: 675 SKLTKAQELGVTVLDE-DALKALLGMS 700
>gi|332284990|ref|YP_004416901.1| DNA ligase [Pusillimonas sp. T7-7]
gi|330428943|gb|AEC20277.1| DNA ligase [Pusillimonas sp. T7-7]
Length = 698
Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust.
Identities = 276/680 (40%), Positives = 419/680 (61%), Gaps = 56/680 (8%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L+ E++ HN YY+ D P++SD YD+L+ EL ++E+ +PEL+T +S TQ VG
Sbjct: 14 RAETLRAEINEHNHRYYVQDAPVVSDAAYDKLMTELIELEQTHPELITPESPTQRVGAEP 73
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK------LTKNIEYIAELKFDGIA 130
+ V H M SL N F ED+ F+KR+ + L + ++Y+AELKFDG+A
Sbjct: 74 LPSFDSVRHAVPMRSLGNAFDAEDIHAFSKRVFDTLHGAGMAGAEEKVQYVAELKFDGLA 133
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+LRYE G L +A+TRGDG GE+IT+NI + +PL L YP ++LEVR EVL+ ++D
Sbjct: 134 VSLRYEEGRLVRAATRGDGQTGEDITSNIRTLRSVPLKLKGDYP-QVLEVRGEVLMNRQD 192
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELR--------- 241
F KLN+ + G K F NPRNAAAG LRQL+P+I + L F+A+G GE+R
Sbjct: 193 FEKLNQAQQARGEKVFVNPRNAAAGSLRQLDPRITAKRPLRFYAYGWGEIRIVHDGQTEL 252
Query: 242 ------GMNMPS-SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEI 294
MP +H+++L+W Q +GL + ++ G L++FY+ I R LP++I
Sbjct: 253 FRQESGSAEMPRKTHAQMLDWLQALGLPVNDSRKLVCGAQGLLDFYEHIGSTRTALPFDI 312
Query: 295 DGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLK 354
DGVVYK++ L Q+ LG+ +RAPRFA+A+KF ++E T++ +I +Q+GRTG ITPVA L+
Sbjct: 313 DGVVYKVDSLEAQEVLGYVARAPRFAIAHKFPAQEETTRLLSIEVQVGRTGAITPVARLE 372
Query: 355 PVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKI 414
PV + G+T+T ATLHNE EI RK++++GDTVVV R+G+VIP++ + +L LRP D+ +F +
Sbjct: 373 PVFVGGVTVTNATLHNEDEIRRKDVRVGDTVVVRRAGDVIPEVLAPVLDLRPPDTSLFVM 432
Query: 415 PNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLV 474
P CP+C S I E ++RC+G C AQRK L H + RKA++I GLG+K++++LV
Sbjct: 433 PRQCPVCGSAIERPEDEAVSRCTGGLF-CAAQRKQSLSHAAGRKALDIEGLGEKLVDQLV 491
Query: 475 NANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGET 534
++ V + DL+ + L +R+ K A+N++ A++K++ + R +YALGIRHVGE
Sbjct: 492 DSGRVKSLADLFTLTSDELAAYERMGRKSADNLVAALEKARTPSLERLLYALGIRHVGEA 551
Query: 535 TAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIY- 593
TA++LA +F +++ + A E LL + +G + + F +P +R +I+QL G++
Sbjct: 552 TARDLARHFGSVDAVMAADETALLQVHDVGQVVAASILNFFAEPHNRDVIAQLAAAGVHA 611
Query: 594 --------------------------WLNNPNTK-----GGKVVNFISKNTNYLVKGQKP 622
W + T+ GGKV +SK T Y+V G++
Sbjct: 612 SAPEQASGSDLRLAGKTLVLTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYVVAGEEA 671
Query: 623 GKKLEKAIKLNIKILDEKNF 642
G KL KA +L + +LDE
Sbjct: 672 GSKLTKAAELGVPVLDEDGL 691
>gi|410473845|ref|YP_006897126.1| DNA ligase [Bordetella parapertussis Bpp5]
gi|408443955|emb|CCJ50650.1| DNA ligase [Bordetella parapertussis Bpp5]
Length = 696
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 282/682 (41%), Positives = 418/682 (61%), Gaps = 60/682 (8%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ L+ E+ +HNI YY++D+P + D +YD L+ +L+ +E ++PEL+T DS TQ VG
Sbjct: 12 IARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELVTPDSPTQRVGAAPL 71
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK------LTKNIEYIAELKFDGIAV 131
V H M+SL N F +EDV F+KR+ + L+ L + +EY ELK DG+A+
Sbjct: 72 AEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEYFCELKLDGLAI 131
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+LRYE G L QA+TRGDG GE++T NI I +PL L+ P +LEVR EVL+ + +F
Sbjct: 132 SLRYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLHGA--PRVLEVRGEVLMNRAEF 189
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM--NMPS-- 247
+LN+ + G K F NPRNAAAG LRQL+P+I + L FFA+ GE+ G+ MP+
Sbjct: 190 ERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLPEGMPTRF 249
Query: 248 ----------------SHSELLNWYQKIGLSICGEYSVLS-GVNKLIEFYKKINIKRFNL 290
+H +L+W ++GL + ++ G + L+ FY++I R +L
Sbjct: 250 DEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYERIGKLRADL 309
Query: 291 PYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPV 350
PY+IDGVVYK++ L +Q+ LGF +RAPRFALA+KF ++EA+T++ I +Q+GRTG ITPV
Sbjct: 310 PYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQVGRTGAITPV 369
Query: 351 ALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSK 410
A L PV + G+T+T ATLHNE EI RK+++IGDTV+V R+G+VIP++ +L RP D++
Sbjct: 370 ARLAPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVVGPVLEKRPADAR 429
Query: 411 IFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMI 470
F + CPIC S I E IARC+G C AQRK L H + RKA++I GLG+K+I
Sbjct: 430 EFVMLTACPICGSAIERPEGEAIARCTGGLF-CAAQRKQTLLHAAGRKALDIEGLGEKLI 488
Query: 471 EKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRH 530
++LV+A+ V + D+Y + L+ L+R+ K A N++ AI +++ R ++ALGIRH
Sbjct: 489 DQLVDADRVKSLADIYSLTAFELVALERMGKKSAENLVAAIDQARRPALGRLLFALGIRH 548
Query: 531 VGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDV 590
VGETTA+++A +F ++E + A+EE LL +P +G + +F +P +R ++ QL
Sbjct: 549 VGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQ 608
Query: 591 GIY-------------------------WLNNPNTK-----GGKVVNFISKNTNYLVKGQ 620
G++ W + T+ GGKV +SK T YLV G+
Sbjct: 609 GVHPQAEAEPEGTSLAGKTFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYLVTGE 668
Query: 621 KPGKKLEKAIKLNIKILDEKNF 642
G KL KA +L + +LDE
Sbjct: 669 DAGSKLTKAQELGVPVLDEDGL 690
>gi|33602779|ref|NP_890339.1| DNA ligase [Bordetella bronchiseptica RB50]
gi|412341887|ref|YP_006970642.1| DNA ligase [Bordetella bronchiseptica 253]
gi|427815795|ref|ZP_18982859.1| DNA ligase [Bordetella bronchiseptica 1289]
gi|81429836|sp|Q7WCJ7.1|DNLJ_BORBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|33577221|emb|CAE35778.1| DNA ligase [Bordetella bronchiseptica RB50]
gi|408771721|emb|CCJ56525.1| DNA ligase [Bordetella bronchiseptica 253]
gi|410566795|emb|CCN24364.1| DNA ligase [Bordetella bronchiseptica 1289]
Length = 696
Score = 573 bits (1476), Expect = e-160, Method: Compositional matrix adjust.
Identities = 282/682 (41%), Positives = 417/682 (61%), Gaps = 60/682 (8%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ L+ E+ +HNI YY++D+P + D +YD L+ +L+ +E ++PEL+T DS TQ VG
Sbjct: 12 IARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELVTPDSPTQRVGAAPL 71
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK------LTKNIEYIAELKFDGIAV 131
V H M+SL N F +EDV F+KR+ + L+ L + +EY ELK DG+A+
Sbjct: 72 AEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEYFCELKLDGLAI 131
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+LRYE G L QA+TRGDG GE++T NI I +PL L+ P +LEVR EVL+ + +F
Sbjct: 132 SLRYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLHGA--PRVLEVRGEVLMNRAEF 189
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM--NMPS-- 247
+LN+ + G K F NPRNAAAG LRQL+P+I + L FFA+ GE+ G+ MP+
Sbjct: 190 ERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLPEGMPTRF 249
Query: 248 ----------------SHSELLNWYQKIGLSICGEYSVLS-GVNKLIEFYKKINIKRFNL 290
+H +L+W ++GL + ++ G + L+ FY++I R +L
Sbjct: 250 DEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYERIGKLRADL 309
Query: 291 PYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPV 350
PY+IDGVVYK++ L +Q+ LGF +RAPRFALA+KF ++EA+T++ I +Q+GRTG ITPV
Sbjct: 310 PYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQVGRTGAITPV 369
Query: 351 ALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSK 410
A L PV + G+T+T ATLHNE EI RK+++IGDTV+V R+G+VIP++ +L RP D++
Sbjct: 370 ARLAPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVVGPVLEKRPADAR 429
Query: 411 IFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMI 470
F + CPIC S I E IARC+G C AQRK L H + RKA++I GLG+K+I
Sbjct: 430 EFVMLTACPICGSAIERPEGEAIARCTGGLF-CAAQRKQTLLHAAGRKALDIEGLGEKLI 488
Query: 471 EKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRH 530
++LV+A+ V + D+Y + L L+R+ K A N++ AI +++ R ++ALGIRH
Sbjct: 489 DQLVDADRVKSLADIYSLTAFELAALERMGKKSAENLVAAIDQARRPALGRLLFALGIRH 548
Query: 531 VGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDV 590
VGETTA+++A +F ++E + A+EE LL +P +G + +F +P +R ++ QL
Sbjct: 549 VGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQ 608
Query: 591 GIY-------------------------WLNNPNTK-----GGKVVNFISKNTNYLVKGQ 620
G++ W + T+ GGKV +SK T YLV G+
Sbjct: 609 GVHPQAEAEPEGTSLAGKTFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYLVTGE 668
Query: 621 KPGKKLEKAIKLNIKILDEKNF 642
G KL KA +L + +LDE
Sbjct: 669 DAGSKLTKAQELGVPVLDEDGL 690
>gi|311104688|ref|YP_003977541.1| DNA ligase, NAD-dependent [Achromobacter xylosoxidans A8]
gi|310759377|gb|ADP14826.1| DNA ligase, NAD-dependent [Achromobacter xylosoxidans A8]
Length = 702
Score = 572 bits (1475), Expect = e-160, Method: Compositional matrix adjust.
Identities = 289/676 (42%), Positives = 414/676 (61%), Gaps = 59/676 (8%)
Query: 24 ELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYV 83
E+ +HN+ YY+YD P ISD +YD L+ EL+ +E ++PEL+T +S TQ VG V
Sbjct: 20 EIEQHNVRYYVYDEPSISDAEYDGLMRELQALEAEHPELVTPESPTQRVGAAPVSAFGSV 79
Query: 84 HHTFKMMSLDNGFSDEDVIIFNKRITNELK------LTKNIEYIAELKFDGIAVNLRYEY 137
H M+SL N F +EDV F++R+T+ L+ + +Y ELK DG+A++LRYE
Sbjct: 80 RHVVPMLSLGNAFDEEDVAAFDRRVTDTLRGAGLLGPAQQADYFCELKLDGLAISLRYED 139
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L QA+TRGDG GE++T+NI I IPL L +P ++LEVR EVL+ + DF KLN+
Sbjct: 140 GRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLKGTFP-KVLEVRGEVLMNRADFEKLNQA 198
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM-------------- 243
+ K F NPRNAAAG LRQL+P+I + L FFA+G GE++G+
Sbjct: 199 QAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEVQGLAGTQGGLFAEASAG 258
Query: 244 -----NMPS-SHSELLNWYQKIGLSICGEYS-VLSGVNKLIEFYKKINIKRFNLPYEIDG 296
+P SH +L+W +GL + +++ SG L+ FY K+ R LPY+IDG
Sbjct: 259 AAEASQLPEKSHGAMLDWLASLGLPVNVKHNHRASGAEGLMAFYAKVGKLRPELPYDIDG 318
Query: 297 VVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPV 356
VVYK++ L QK LGF +RAPRFALA+KF ++EA T + I +Q+GRTG ITPVA LKPV
Sbjct: 319 VVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEATTTLLDIEVQVGRTGAITPVARLKPV 378
Query: 357 LIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPN 416
+ G+T+T ATLHNE EI RK+++IGDTV+V R+G+VIP++ +L RP+D++ F +P
Sbjct: 379 FVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVLGPVLEKRPDDAREFVMPT 438
Query: 417 ICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNA 476
CPIC S I +E IARC+G C AQRK L H +SRKA++I GLG+K++++LV++
Sbjct: 439 ACPICGSAIERLEDETIARCTGGLF-CGAQRKQTLWHAASRKALDIEGLGEKLVDQLVDS 497
Query: 477 NIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTA 536
V T DLY + L+ LDR+ K A+N++ AI K++ +R +YALGIRHVGETTA
Sbjct: 498 GRVKTLADLYSLRPLELVGLDRMGQKSADNLVAAIDKARAPALNRLLYALGIRHVGETTA 557
Query: 537 KELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN 596
+++A +F +++ + A E+ L ++P +G + +F + +R +I QL+ G+ +
Sbjct: 558 RDVARHFGSIDAIMDADEDALSSVPDVGPVVAASIRRFFAEQHNRDVIEQLKAQGVNPVA 617
Query: 597 N-------------------PN-----------TKGGKVVNFISKNTNYLVKGQKPGKKL 626
PN GGKV +SK T YLV G+ G KL
Sbjct: 618 EAAPQATTLAGKTFVLTGTLPNWTREEASMRIQAAGGKVSGSVSKKTAYLVAGEDSGSKL 677
Query: 627 EKAIKLNIKILDEKNF 642
KA +L + +LDE
Sbjct: 678 AKAQELGVTVLDEDGL 693
>gi|410421254|ref|YP_006901703.1| DNA ligase [Bordetella bronchiseptica MO149]
gi|427818345|ref|ZP_18985408.1| DNA ligase [Bordetella bronchiseptica D445]
gi|427825793|ref|ZP_18992855.1| DNA ligase [Bordetella bronchiseptica Bbr77]
gi|408448549|emb|CCJ60232.1| DNA ligase [Bordetella bronchiseptica MO149]
gi|410569345|emb|CCN17444.1| DNA ligase [Bordetella bronchiseptica D445]
gi|410591058|emb|CCN06154.1| DNA ligase [Bordetella bronchiseptica Bbr77]
Length = 696
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 282/682 (41%), Positives = 416/682 (60%), Gaps = 60/682 (8%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ L+ E+ +HNI YY++D+P + D +YD L+ +L+ +E +PEL+T DS TQ VG
Sbjct: 12 IARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAAHPELVTPDSPTQRVGAAPL 71
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK------LTKNIEYIAELKFDGIAV 131
V H M+SL N F +EDV F+KR+ + L+ L + +EY ELK DG+A+
Sbjct: 72 AEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEYFCELKLDGLAI 131
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+LRYE G L QA+TRGDG GE++T NI I +PL L+ P +LEVR EVL+ + +F
Sbjct: 132 SLRYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLHGA--PRVLEVRGEVLMNRAEF 189
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM--NMPS-- 247
+LN+ + G K F NPRNAAAG LRQL+P+I + L FFA+ GE+ G+ MP+
Sbjct: 190 ERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLPEGMPTRF 249
Query: 248 ----------------SHSELLNWYQKIGLSICGEYSVLS-GVNKLIEFYKKINIKRFNL 290
+H +L+W ++GL + ++ G + L+ FY++I R +L
Sbjct: 250 DEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYERIGKLRADL 309
Query: 291 PYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPV 350
PY+IDGVVYK++ L +Q+ LGF +RAPRFALA+KF ++EA+T++ I +Q+GRTG ITPV
Sbjct: 310 PYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQVGRTGAITPV 369
Query: 351 ALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSK 410
A L PV + G+T+T ATLHNE EI RK+++IGDTV+V R+G+VIP++ +L RP D++
Sbjct: 370 ARLAPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVVGPVLEKRPADAR 429
Query: 411 IFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMI 470
F + CPIC S I E IARC+G C AQRK L H + RKA++I GLG+K+I
Sbjct: 430 EFVMLTACPICGSAIERPEGEAIARCTGGLF-CAAQRKQTLLHAAGRKALDIEGLGEKLI 488
Query: 471 EKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRH 530
++LV+A+ V + D+Y + L L+R+ K A N++ AI +++ R ++ALGIRH
Sbjct: 489 DQLVDADRVKSLADIYSLTAFELAALERMGKKSAENLVAAIDQARRPALGRLLFALGIRH 548
Query: 531 VGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDV 590
VGETTA+++A +F ++E + A+EE LL +P +G + +F +P +R ++ QL
Sbjct: 549 VGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQ 608
Query: 591 GIY-------------------------WLNNPNTK-----GGKVVNFISKNTNYLVKGQ 620
G++ W + T+ GGKV +SK T YLV G+
Sbjct: 609 GVHPQAEAEPEGTSLAGKTFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYLVTGE 668
Query: 621 KPGKKLEKAIKLNIKILDEKNF 642
G KL KA +L + +LDE
Sbjct: 669 DAGSKLTKAQELGVPVLDEDGL 690
>gi|394988434|ref|ZP_10381269.1| hypothetical protein SCD_00834 [Sulfuricella denitrificans skB26]
gi|393791813|dbj|GAB70908.1| hypothetical protein SCD_00834 [Sulfuricella denitrificans skB26]
Length = 674
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 279/658 (42%), Positives = 417/658 (63%), Gaps = 37/658 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L++EL RHN YY+ D P I D +YD+L EL+ +E + P L T DS T+ +G
Sbjct: 10 RARFLREELERHNYLYYVLDEPEIPDAEYDKLFRELEWLEAENPLLATPDSPTRRIGATP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SL+N F DE+V F++R+ L + + +EY + KFDG+A++L YE
Sbjct: 70 LAEFSQLTHRVPMLSLNNAFEDEEVAAFDRRVREGLGVER-VEYAVDTKFDGLAISLIYE 128
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L Q +TRGDG GE++TTN+ I IPL L+ P +LLEVR EVLI K DF KLN+
Sbjct: 129 NGILLQGATRGDGYTGEDVTTNLRTIKAIPLRLHTTNPSQLLEVRGEVLILKADFEKLNR 188
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ G K+F NPRNAAAG LRQL+P+I + L FFA+G+G + G+N+P S ++++
Sbjct: 189 QQRDKGEKEFANPRNAAAGSLRQLDPRITATRPLTFFAYGLGSVEGVNLPRKLSAVMDYL 248
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ + + +C E V+ GV+ L+E+Y+ I +R +LPY+IDGVVYK+N L +Q++LGF +RA
Sbjct: 249 ESLRVPVCRERKVVQGVDGLLEYYRMIGARRDSLPYDIDGVVYKVNDLDSQERLGFVARA 308
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PRFA+A+KF ++EA+T++ I +Q+GRTG +TPVA L+PV + G ++ ATLHNE EI R
Sbjct: 309 PRFAVAHKFPAQEAMTELLGITVQVGRTGALTPVARLRPVFVGGAMVSNATLHNEDEIRR 368
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPN---ICPICNSKIIYIESNLI 433
K+++IGDTV+V R+G+VIP++ + R ++ F + +CP+C S +I +
Sbjct: 369 KDVRIGDTVIVRRAGDVIPEVVGVVPGNRHAGAQEFSLLELYPVCPVCGSHVIRLPDEAA 428
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
ARCSG C AQRK + HF+SR+AM+I G+G K++++LV+ ++ T DLYK++ L
Sbjct: 429 ARCSGGLF-CPAQRKQAILHFASRRAMDIEGMGDKLVDQLVDKELIHTPADLYKLSMNTL 487
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
LDR++ K A+N L AI+ SK TT +RFI+ALGIR+VGE TAK+LA +F L+ + A
Sbjct: 488 ANLDRMAEKSASNTLAAIEASKKTTLARFIFALGIRNVGEATAKDLARHFGGLDALMAAD 547
Query: 554 EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNN---------------- 597
+ L +P +G ++ ++F +P + +I+QL G++W
Sbjct: 548 DGALQQVPDVGPVVAQSIVQFFVEPHNCEVIAQLVAAGVHWEEGAGSPVSTSPISGKTFV 607
Query: 598 -----PNTK-----------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
PN GGKV +SK T+++V G + G KL KA +L + +LDE
Sbjct: 608 LTGTLPNLTRDEAKERIEALGGKVTGSVSKKTDFVVAGAEAGSKLIKAQELGVLVLDE 665
>gi|91788454|ref|YP_549406.1| DNA ligase [Polaromonas sp. JS666]
gi|123164833|sp|Q12AD4.1|DNLJ_POLSJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|91697679|gb|ABE44508.1| DNA ligase, NAD-dependent [Polaromonas sp. JS666]
Length = 706
Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust.
Identities = 292/687 (42%), Positives = 418/687 (60%), Gaps = 53/687 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ L+ ELH H YY+ D P I D++YD+L EL+ +E YPELLT DS TQ VG
Sbjct: 22 RMAALRAELHAHAHRYYVLDEPTIPDSEYDRLFKELQDLEAAYPELLTPDSPTQRVGGKP 81
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVII--FNKRITNELKLTKN---IEYIAELKFDGIAV 131
+ V H M+S+ E F+ R+ EL LT++ +EY+AELKFDG+A+
Sbjct: 82 LDQFASVRHKVPMLSIRTETDTEATGAQNFDTRVRKELGLTESNPPVEYVAELKFDGLAM 141
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+LRYE+G L QA+TRGDG +GE +T NI I +IPL L PP +LEVR EV + + DF
Sbjct: 142 SLRYEHGVLVQAATRGDGEVGEEVTQNIRTIRQIPLKLPSDAPP-VLEVRGEVYMRRADF 200
Query: 192 IKLN-KYRYHL-----GLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL---RG 242
LN K R + G K F NPRNAAAG +RQL+P I + L FFA+GVGE+
Sbjct: 201 EALNDKQREKIAAGAKGEKTFVNPRNAAAGAVRQLDPAIAAQRPLSFFAYGVGEVVLEAE 260
Query: 243 MNMP-----SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGV 297
P ++H ELL + G + + + G ++LI F++ + +R +LPY+IDGV
Sbjct: 261 QANPKNPWVATHMELLQALKSWGFPVAAQTKIAHGASELIAFHQAMGQQRDSLPYDIDGV 320
Query: 298 VYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVL 357
VYK+N L+ QK++GF SR PR+A+A+K+ ++E LT + I +Q+GRTG +TPVA L PV
Sbjct: 321 VYKVNSLALQKQMGFVSREPRWAVAHKYPAQEQLTTVLGIEVQVGRTGKLTPVAKLAPVF 380
Query: 358 IDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNI 417
+ G+T+T ATLHNE E RK++++GDTV+V R+G+VIP++ S + R + +F +P
Sbjct: 381 VGGVTVTNATLHNEDEARRKDVRVGDTVIVRRAGDVIPEVVSVLPDKRLPGAPMFTMPRQ 440
Query: 418 CPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNAN 477
CP+C S + E RC+G C AQRK + H++ R+A+ I GLG K++E+LV+AN
Sbjct: 441 CPVCGSDAVREEGEADYRCTGGLF-CGAQRKEAILHYAHRRAVEIEGLGDKLVEQLVDAN 499
Query: 478 IVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAK 537
++ T DLYK+ L LDR++ K ANN+L A++KSK TT RF++ LGIRHVGE TAK
Sbjct: 500 VIRTLPDLYKLGLTALASLDRMAEKSANNLLKALEKSKQTTLPRFLFGLGIRHVGEATAK 559
Query: 538 ELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--- 594
ELA +F NL+ + AT+EQLL + +GS ++ F +QP +R ++ QLR G++W
Sbjct: 560 ELARHFGNLDAIMDATQEQLLAVSDVGSIVAQSIRTFFDQPHNREVVEQLRACGVHWEEG 619
Query: 595 -----------------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKK 625
L+ K GGKV +SK T+Y+V G + G K
Sbjct: 620 EPAAVAPKPLSGKTFVITGTLPTLSRDEAKDKVEAAGGKVAGSVSKKTDYVVAGTEAGSK 679
Query: 626 LEKAIKLNIKILDEKNFVKIVKGFSTE 652
L KA +L I ++DE ++++ E
Sbjct: 680 LVKAQELGIAVIDEAALMRLLASAEAE 706
>gi|94499335|ref|ZP_01305873.1| DNA ligase, NAD-dependent [Bermanella marisrubri]
gi|94428967|gb|EAT13939.1| DNA ligase, NAD-dependent [Oceanobacter sp. RED65]
Length = 694
Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust.
Identities = 285/679 (41%), Positives = 423/679 (62%), Gaps = 34/679 (5%)
Query: 8 KINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDS 67
K++ + L+ RV EL+ EL+R N AYY+ D+P I D +YD+L ELK +E K+PELLTKDS
Sbjct: 17 KVDDATLT-RVAELRDELNRANHAYYVLDDPSIPDAEYDRLFHELKGLESKHPELLTKDS 75
Query: 68 LTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFD 127
TQ VG + V H M+SLDN F D+D+ FN+RI+ L +I + E K D
Sbjct: 76 PTQRVGATPLSEFETVAHEVPMLSLDNAFDDQDMRDFNRRISERLTTKSSIRFACEPKLD 135
Query: 128 GIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIY 187
GIAV+L YE G L +A+TRGDG +GENIT NI ++ +PL L P +LEVR EV +
Sbjct: 136 GIAVSLLYENGKLVRAATRGDGAVGENITQNIRTVYSVPLTLMGNDHPPVLEVRGEVYMP 195
Query: 188 KKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPS 247
KK F N G K F NPRNAAAG LRQL+ +I ++ L F + +G + G +P+
Sbjct: 196 KKGFEAFNVKARERGEKTFVNPRNAAAGSLRQLDSRITASRPLEFCCYSMGRVDGAELPT 255
Query: 248 SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQ 307
HSE+L + + G I E +V+ GV +++Y+ + KR +LPYEIDG+VYK++ L Q
Sbjct: 256 VHSEILKKFSEWGFKINPEMAVVEGVEGCLDYYENLAAKRNDLPYEIDGIVYKVDDLKLQ 315
Query: 308 KKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRAT 367
++LGF SRAPR+A+A KF ++E +T +K I Q+GRTG ITPVA L+PV + G+T++ AT
Sbjct: 316 QRLGFVSRAPRWAIARKFPAQEEMTLLKGIEFQVGRTGAITPVARLEPVFVGGVTVSNAT 375
Query: 368 LHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIY 427
LHN E+ R + +IGDTVV+ R+G+VIP++ S + RP++S+ ++P+ CP+C+S +
Sbjct: 376 LHNMDEVERLDARIGDTVVIRRAGDVIPQVASVVKEKRPDNSQKIQLPDACPVCDSHVER 435
Query: 428 IESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYK 487
+E +ARC+G + C AQRK ++HF+SRKAM+I GLG K++E+LV+ + + VDLYK
Sbjct: 436 VEGEAVARCTGGLV-CAAQRKEAIKHFASRKAMDIDGLGDKIVEQLVDEGKIKSFVDLYK 494
Query: 488 INFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLE 547
+ +++ L+R+ +K A N+L AI+ SK T+F +F+YALGIR VG TA L +F +
Sbjct: 495 LKHEDIASLERMGDKSAQNLLKAIEASKNTSFPKFLYALGIREVGVATANNLVQHFLTIR 554
Query: 548 CMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------- 594
+ KA+ ++L+ + +G + + F +P ++ +I L ++GI W
Sbjct: 555 ALVKASFDELIEVDDVGPIVAEHILNFFAEPHNQTIIDGLLNIGITWPEVKSVSNSELPL 614
Query: 595 -------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIK 635
+ N K G KV +SK T+ LV G+K G KL KA L +
Sbjct: 615 SGETYVVTGTLSAMGRENAKAYLQQLGAKVAGSVSKKTSALVAGEKAGSKLTKAQDLEVP 674
Query: 636 ILDEKNFVKIVKGFSTETK 654
+LDE+ F+ ++ E +
Sbjct: 675 VLDEEQFLSLLAEHGIEPE 693
>gi|387129023|ref|YP_006291913.1| DNA ligase [Methylophaga sp. JAM7]
gi|386270312|gb|AFJ01226.1| DNA ligase [Methylophaga sp. JAM7]
Length = 671
Score = 570 bits (1468), Expect = e-159, Method: Compositional matrix adjust.
Identities = 275/662 (41%), Positives = 420/662 (63%), Gaps = 32/662 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+T+L++++ N YY +D+P++SD +YD+L ELK++E+++PEL+T DS TQ VG
Sbjct: 10 RITQLREQIRELNFRYYRHDDPLVSDAEYDRLFAELKQLEQQHPELITPDSPTQRVGAPP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F ++ F++RI + L +++EY+AE K DG+A+++RYE
Sbjct: 70 LDKFTQVTHALPMLSLDNVFDTVELAAFDQRIKDRLNTEQSVEYVAEPKLDGLAISIRYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG +GE++TTN+ I +PL L PE++E+R E+ + K+ F KLN+
Sbjct: 130 KGLLTQAATRGDGMVGEDVTTNVRTIRNVPLTLQGFDIPEVVEIRGEIYLPKQGFEKLNQ 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ G K F N RNAAAG LRQL+ + + L + + +GE+ GM +P SH E L
Sbjct: 190 QQLAQGKKIFVNARNAAAGSLRQLDSSVTATRPLALYCYSLGEIIGMRLPESHLEALKLI 249
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ G +IC + +L ++ + +K+ KR LPYEIDGVV+K+N L+ QK+LGF SRA
Sbjct: 250 ESWGGAICPDIELLPDLSACQRYIEKLADKRDALPYEIDGVVFKVNSLNLQKRLGFVSRA 309
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T ++AI +Q+GRTG ITPVA LKPV + G+T++ ATLHNE EI R
Sbjct: 310 PRWAIAYKFPAQEEMTLVEAIEVQVGRTGAITPVARLKPVFVGGVTVSNATLHNEDEIRR 369
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+++IGDTV+V R+G+VIP+I + + RP + +F +P CP C++K+ + IARC
Sbjct: 370 KDVRIGDTVIVRRAGDVIPEIVGVVTNKRPAQTTVFVMPENCPACDAKVERLPGEAIARC 429
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG + C AQRK L+HF+SRKAM+I GLG K++E+LV+A +V T DL+ + +L +L
Sbjct: 430 SGG-LSCPAQRKEALKHFASRKAMDIEGLGDKLVEQLVDAELVKTPADLFHLTVADLSQL 488
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ +K A N++ A+Q +K T F+RF+YALGIR VGE TA+ +A ++ +L+ + AT E
Sbjct: 489 ERMGDKSAENLIQALQAAKQTRFARFLYALGIREVGEATARSMALHYVSLDNLKVATIES 548
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNN-PN---------------- 599
LL I IG + + F QP + +I +L + GI W P+
Sbjct: 549 LLEIEDIGPVVAQHVVTFFEQPHNLEVIDKLLEQGIVWEEEKPDYADSELYGKTIVLTGT 608
Query: 600 --------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
G +V +S T+++V G+ G KL KA L + ++DE +
Sbjct: 609 LTHFSRSEAKEKLLALGARVAGSVSAKTDFVVAGRDAGTKLTKAASLGVAVVDEAQLQQW 668
Query: 646 VK 647
++
Sbjct: 669 IQ 670
>gi|359797564|ref|ZP_09300148.1| DNA ligase [Achromobacter arsenitoxydans SY8]
gi|359364675|gb|EHK66388.1| DNA ligase [Achromobacter arsenitoxydans SY8]
Length = 700
Score = 570 bits (1468), Expect = e-159, Method: Compositional matrix adjust.
Identities = 290/694 (41%), Positives = 417/694 (60%), Gaps = 68/694 (9%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
L+ E+ +HN+ YY+YD P +SD +YD L+ EL+ +E ++PEL+T +S TQ VG
Sbjct: 14 AARLRTEIEQHNVRYYVYDEPSVSDAEYDGLMRELQALEAEHPELVTPESPTQRVGAAPV 73
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK------LTKNIEYIAELKFDGIAV 131
V H M+SL+N F +E+V F++R+ + L+ + +Y ELK DG+A+
Sbjct: 74 SAFGSVRHVVPMLSLNNAFDEEEVAAFDRRVADTLRGAGMLGPAQQPDYFCELKLDGLAI 133
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+LRYE G L QA+TRGDG GE++T+NI I IPL L P +LEVR EVL+ + DF
Sbjct: 134 SLRYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLK-GAAPRVLEVRGEVLMNRADF 192
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM-------- 243
KLN+ + K F NPRNAAAG LRQL+P+I + L FFA+G GE+ G+
Sbjct: 193 EKLNEAQARRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEVHGLPGAQSGLF 252
Query: 244 -----------NMPS-SHSELLNWYQKIGLSICGEYSVL-----SGVNKLIEFYKKINIK 286
+P SH +L W +GL + +VL +G L+ FY K+
Sbjct: 253 DEASAGAEQASQLPEKSHGAMLEWLASLGLPV----NVLHNHRATGAEGLMAFYAKVGAM 308
Query: 287 RFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGI 346
R NLPY+IDGVVYK++ L QK LGF +RAPRFALA+KF ++EA T + I +Q+GRTG
Sbjct: 309 RANLPYDIDGVVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEATTTLLDIEVQVGRTGA 368
Query: 347 ITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRP 406
ITPVA LKPV + G+T+T ATLHNE EI RK+++IGDTV+V R+G+VIP++ + +L RP
Sbjct: 369 ITPVARLKPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVLAPVLEKRP 428
Query: 407 NDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLG 466
+D++ F +P CP+C S I +E IARC+G C AQRK L H +SRKA++I GLG
Sbjct: 429 SDAREFVMPTACPVCGSAIERLEDETIARCTGGLF-CGAQRKQTLWHAASRKALDIEGLG 487
Query: 467 KKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYAL 526
+K++++LV++ V T DLY + L+ LDR+ K A+N++ AI K++ +R ++AL
Sbjct: 488 EKLVDQLVDSGRVKTLADLYSLRPLELVGLDRMGQKSADNLVAAIDKARAPGLARLLFAL 547
Query: 527 GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQ 586
GIRHVGETTA+++A +F +++ + A E+ L ++P +G + F + +R +I Q
Sbjct: 548 GIRHVGETTARDVARHFGSIDAIMDADEDALSSVPDVGPVVAASIRHFFAEQHNRDVIEQ 607
Query: 587 LRDVGIYWLNN-------------------PN-----------TKGGKVVNFISKNTNYL 616
L+ G+ + PN GGKV +SK T YL
Sbjct: 608 LKAQGVNPVAEAAPQGTTLAGKTFVLTGTLPNWTREEASMHIQAAGGKVSGSVSKKTAYL 667
Query: 617 VKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGFS 650
V G+ G KL KA +L + +LDE K + G S
Sbjct: 668 VAGEDSGSKLAKAQELGVAVLDEDGL-KALLGMS 700
>gi|302878427|ref|YP_003846991.1| NAD-dependent DNA ligase [Gallionella capsiferriformans ES-2]
gi|302581216|gb|ADL55227.1| DNA ligase, NAD-dependent [Gallionella capsiferriformans ES-2]
Length = 674
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 276/671 (41%), Positives = 418/671 (62%), Gaps = 45/671 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ L+ E+ HN YY+ D P + D YD L EL+++E ++PE LT DS TQ VG
Sbjct: 9 RIKALRSEIEAHNYQYYVLDAPTVPDAGYDTLFRELQRLEAQHPEFLTSDSPTQRVGAAP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL+N FS ++VI F+ R+ + L + + +EY ELKFDG+A+NL Y
Sbjct: 69 LKYFAEVPHRTPMLSLNNAFSADEVIAFDARVRDALGIDE-VEYAVELKFDGLAINLSYR 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVL---NIKYPPELLEVRCEVLIYKKDFIK 193
G Q +TRGDG+ GE++T N+ + IPL L N + +EVR EVL++ +DF
Sbjct: 128 NGIFVQGATRGDGSTGEDVTENLRTVRSIPLRLKEANGEVLCADVEVRGEVLMFTRDFDL 187
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH---- 249
LN+ + G K+F NPRNAAAG LRQL+ + + L F+A+GVG G+N+ H
Sbjct: 188 LNEQQRLNGEKEFVNPRNAAAGSLRQLDSAVTATRHLSFYAYGVGLCDGVNLSGKHDLQM 247
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
++L +W G+ + + S + GV L+++YK++ R LP+ IDGVVYK+N ++ Q+
Sbjct: 248 AQLADW----GVPVATQRSTVQGVAGLLDYYKEMGALRAALPFAIDGVVYKVNDIAQQQM 303
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF SRAPRFA+A+KF ++EA+T + I++Q+GRTG +TPVA L PV + G+T+T ATLH
Sbjct: 304 LGFVSRAPRFAIAHKFPAEEAMTTLLDIDVQVGRTGALTPVARLTPVFVGGVTVTNATLH 363
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
NE EI RK+++IGDTV+V R+G+VIP++ +L RP+D+++F +P CP+C S ++ E
Sbjct: 364 NEDEIRRKDVRIGDTVIVRRAGDVIPEVARVVLERRPSDARVFSMPQACPVCGSHVVREE 423
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
RC+G C AQRK L HF+ R+AMNI GLG K++E+LV+A V T DLYK+
Sbjct: 424 DAAAWRCTGGLF-CPAQRKQALLHFAGRRAMNIDGLGDKLVEQLVDAQQVSTPADLYKLG 482
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L+ L+R+ K A N+L AI+ S+ TT +RF++ALGIR+VGETTA++LA +F L+ +
Sbjct: 483 MSGLVSLERMGEKSALNLLDAIEASRKTTLARFLFALGIRNVGETTARDLAQHFGALDAI 542
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
+A E+L + +G ++ + F + + +I+QLR+ G++W
Sbjct: 543 MQADAERLQQVRDVGPVVAQSMVDFFAEAHNLAVIAQLREAGVHWDEHSPAPQEDRIYTG 602
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L+ K G KV +SK T+++V G G KLE+A++L + +L
Sbjct: 603 KTFVLTGTLASLSRQQAKERLEALGAKVSGSVSKKTDFVVAGSDSGSKLERAMELGVAVL 662
Query: 638 DEKNFVKIVKG 648
E F+ +++G
Sbjct: 663 SESEFLLLIEG 673
>gi|33597876|ref|NP_885519.1| DNA ligase [Bordetella parapertussis 12822]
gi|81425567|sp|Q7W0T4.1|DNLJ_BORPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|33574305|emb|CAE38638.1| DNA ligase [Bordetella parapertussis]
Length = 696
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 281/682 (41%), Positives = 416/682 (60%), Gaps = 60/682 (8%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ L+ E+ +HNI YY++D+P + D +YD L+ +L+ +E ++PEL+T DS TQ VG
Sbjct: 12 IARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELVTPDSPTQRVGAAPL 71
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK------LTKNIEYIAELKFDGIAV 131
V H M+SL N F +EDV F+KR+ + L+ L + +EY ELK DG+A+
Sbjct: 72 AEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEYFCELKLDGLAI 131
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L QA+TRGDG GE++T NI I +PL L+ P +LEVR EVL+ + +F
Sbjct: 132 SLCYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLHGA--PRVLEVRGEVLMNRAEF 189
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM--NMPS-- 247
+LN+ + G K F NPRNAAAG LRQL+P+I + L FFA+ GE+ G+ MP+
Sbjct: 190 ERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLPEGMPTRF 249
Query: 248 ----------------SHSELLNWYQKIGLSICGEYSVLS-GVNKLIEFYKKINIKRFNL 290
+H +L+W ++GL + ++ G + L+ FY++I R +L
Sbjct: 250 DEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYERIGKLRADL 309
Query: 291 PYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPV 350
PY+IDGVVYK++ L +Q+ LGF +RAPRFALA+KF ++EA+T++ I +Q+GRTG ITPV
Sbjct: 310 PYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQVGRTGAITPV 369
Query: 351 ALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSK 410
A L PV + G+T+T ATLHNE EI RK+++IGDTV+V R+G+VIP++ +L RP D++
Sbjct: 370 ARLAPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVVGPVLEKRPADAR 429
Query: 411 IFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMI 470
F + CPIC S I E IARC+G C AQRK L H + RKA++I GLG+K+I
Sbjct: 430 EFVMLTACPICGSAIERPEGEAIARCTGGLF-CAAQRKQTLLHAAGRKALDIEGLGEKLI 488
Query: 471 EKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRH 530
++LV+A+ V + D+Y + L L+R+ K A N++ AI +++ R ++ALGIRH
Sbjct: 489 DQLVDADRVKSLADIYSLTAFELAALERMGKKSAENLVAAIDQARRPALGRLLFALGIRH 548
Query: 531 VGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDV 590
VGETTA+++A +F ++E + A+EE LL +P +G + +F +P +R ++ QL
Sbjct: 549 VGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQ 608
Query: 591 GIY-------------------------WLNNPNTK-----GGKVVNFISKNTNYLVKGQ 620
G++ W + T+ GGKV +SK T YLV G+
Sbjct: 609 GVHPQAEAEPEGTSLAGKTFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKKTAYLVTGE 668
Query: 621 KPGKKLEKAIKLNIKILDEKNF 642
G KL KA +L + +LDE
Sbjct: 669 DAGSKLTKAQELGVPVLDEDGL 690
>gi|289208742|ref|YP_003460808.1| DNA ligase, NAD-dependent [Thioalkalivibrio sp. K90mix]
gi|288944373|gb|ADC72072.1| DNA ligase, NAD-dependent [Thioalkalivibrio sp. K90mix]
Length = 697
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 263/682 (38%), Positives = 414/682 (60%), Gaps = 48/682 (7%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
++ R+ +L++++ HN YY+ D+P +SD ++D L+ EL+++E +P+L+T DS TQ
Sbjct: 16 GEVGERIEQLRRQIEHHNYRYYVLDDPEVSDAEFDALMRELEQLEADHPDLVTPDSPTQR 75
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--------KLTKNIEYIAE 123
VG V H M+SL NGF +++ F++R+ L + + + Y+AE
Sbjct: 76 VGGAPAAGFDTVRHRLPMLSLANGFESDEIRDFDRRVRERLAKQTGDPARAEQAVAYMAE 135
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKY---PPELLEV 180
K DG+A++L YE G L QA+TRGDG GE++T N+ + IPL L +Y P +LEV
Sbjct: 136 PKLDGLAISLIYENGRLVQAATRGDGETGEDVTGNVRTVRPIPLHLGDRYTDDAPGVLEV 195
Query: 181 RCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL 240
R EV + + DF +LN+ G + F NPRNAAAG LRQL+PK+ + L FFA+ VG +
Sbjct: 196 RGEVFMRRSDFERLNQGLEADGQRGFMNPRNAAAGSLRQLDPKVTARRPLSFFAYSVGHV 255
Query: 241 RGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYK 300
G +P + S L+W ++G +C E +VL GV + +Y+++ +R L YEIDG+VYK
Sbjct: 256 EGGTLPDTQSGTLDWLHRLGFPVCPERAVLDGVEGCLAYYERLAERRRELDYEIDGIVYK 315
Query: 301 INCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDG 360
++ L+ Q++LGF SRAPR+A+A+KF ++E T ++A++ ++GRTG +TPVA L+PVL+ G
Sbjct: 316 VDSLADQQQLGFVSRAPRWAIAHKFPAEEQTTTLRAVDFRVGRTGALTPVARLEPVLVGG 375
Query: 361 ITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPI 420
+T++ ATLHN EI RK+I+IGD V+V R+G+VIP++ RP D++ ++P CP
Sbjct: 376 VTVSNATLHNMDEIARKDIRIGDRVIVRRAGDVIPEVVGRAGGERPADTRAIEMPTRCPE 435
Query: 421 CNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVV 480
C+S I E +ARC+G + C AQR+ L+HF SR+AM+I G G+K+IE+L + IV
Sbjct: 436 CDSHIERPEGEAVARCTGGLV-CPAQRREALKHFVSRRAMDIEGFGEKLIEQLADGGIVQ 494
Query: 481 TAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELA 540
+ DL+ ++ + L L+RV KLA N++ A+++++ TT +RFI+ALGIR VGE TA+ LA
Sbjct: 495 SPADLFALDTERLEALERVGPKLAENLVNALEQARETTLARFIFALGIREVGEVTARNLA 554
Query: 541 NYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP-- 598
Y+ +L+ + +A E L +P +G + F +P + +I LR+ G++W + P
Sbjct: 555 TYYGDLDTLMQADAEALQEVPDVGPIVAEHIANFFAEPHNLEVIRALREAGVHWPDPPAR 614
Query: 599 ----------------------------------NTKGGKVVNFISKNTNYLVKGQKPGK 624
+G KV +SK T ++ G PG
Sbjct: 615 PAAEKGETAPLAGNTYVLTGSFDTMTREEAKAALEARGAKVTGSVSKKTTAVIAGTDPGS 674
Query: 625 KLEKAIKLNIKILDEKNFVKIV 646
K+ KA L+I IL + +++
Sbjct: 675 KVTKAESLDIPILGPDDLAQLL 696
>gi|358637809|dbj|BAL25106.1| NAD-dependent DNA ligase [Azoarcus sp. KH32C]
Length = 677
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 282/669 (42%), Positives = 409/669 (61%), Gaps = 41/669 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R +L++EL HN AYY+ D P + D +YD+L EL+ +E KYPEL T DS T+ VG
Sbjct: 10 RAAQLRRELEAHNYAYYVLDAPTVPDAEYDRLFRELEALEAKYPELATPDSPTRRVGGAP 69
Query: 77 GENSKYVHHTFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAV 131
+ V H M+S+ + S+ ++ F+ R+ N L L + +EY ELKFDG+A+
Sbjct: 70 MPELRPVRHKVPMLSIRTETDTSNGGIVAFDTRVRNALGLGETDPAVEYAGELKFDGLAI 129
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+LRYE G L +TRGDG GE++T N+ I +IPL L P ++EVR E+ + + +F
Sbjct: 130 SLRYEDGVLVSGATRGDGETGEDVTHNVRTIRQIPLRLKGDAP-AVIEVRGEIYMRRDEF 188
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN + G K F NPRNAAAG +RQL+P+I + L FFA+G+GE+ MP +H+
Sbjct: 189 DKLNARQLAAGEKVFVNPRNAAAGAVRQLDPRIAAKRPLSFFAYGLGEVGDWKMPGTHAG 248
Query: 252 LLNWYQKIGLSICGEYSVLS-GVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
LL+ G +C E VL+ GV L F+ +I R +LPY+IDGVVYK+N Q++L
Sbjct: 249 LLDALAAFGFPVC-ELRVLAQGVEGLKAFHDRIAALRDSLPYDIDGVVYKVNRFDLQREL 307
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +R PR+A+A+K+ ++E +T++ I +Q+GRTG +TPVA LKPV + G+T+T ATLHN
Sbjct: 308 GFVTREPRWAVAHKYPAQEEITELLGIEVQVGRTGALTPVARLKPVFVGGVTVTNATLHN 367
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
E EI RK I IGD V+V R+G+VIP++ ++I+ R + F +P CP+C S + E
Sbjct: 368 EEEIQRKGILIGDHVIVRRAGDVIPQVVAAIVERRTGMERAFVMPTSCPVCGSHVDKAED 427
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+G C AQRK L HF+ R+AM+I GLG K++++LV A IV T DLYK+
Sbjct: 428 EAVARCTGGLF-CPAQRKQALLHFAGRRAMDIEGLGDKLVDQLVEAGIVKTPADLYKLGV 486
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L R++ K A N+L AI+KS+ TT +RFI+ALGIR+VGE TAK+LA +F +L+ +
Sbjct: 487 LALANLQRMAEKSAANLLAAIEKSRHTTLARFIFALGIRNVGEATAKDLARHFGSLDRVM 546
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP------------ 598
A+ EQLL +P +G ++ F + +R +I QLR G+ W
Sbjct: 547 DASVEQLLEVPDVGPIVAESIAAFFAEAHNREVIEQLRAAGVTWEEGAPAARVAGGLSGK 606
Query: 599 --------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
+GGKV +SK T+Y+V G + G KL KA +L + ILD
Sbjct: 607 VFVLTGTLPTMSREDAKALIEARGGKVSGSVSKKTDYVVAGAEAGSKLAKAQELGVAILD 666
Query: 639 EKNFVKIVK 647
E +++++
Sbjct: 667 EAGLLQLIE 675
>gi|393758456|ref|ZP_10347277.1| DNA ligase [Alcaligenes faecalis subsp. faecalis NCIB 8687]
gi|393164875|gb|EJC64927.1| DNA ligase [Alcaligenes faecalis subsp. faecalis NCIB 8687]
Length = 695
Score = 566 bits (1459), Expect = e-158, Method: Compositional matrix adjust.
Identities = 284/691 (41%), Positives = 419/691 (60%), Gaps = 60/691 (8%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV +L++EL +HN AYY+ D P ISD +YD L+ EL +E +PE +T DS TQ VG
Sbjct: 5 RVQQLREELAQHNWAYYIQDAPSISDAQYDALMNELLALEAAHPEWITPDSPTQRVGAAP 64
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL------KLTKNIEYIAELKFDGIA 130
+ V H M+SL N F DE+V F+KR+ + L L + ++Y+AE KFDG+A
Sbjct: 65 LDGFATVQHAVPMLSLGNAFEDEEVQAFDKRVADTLVEAGMVGLDRRVDYLAEYKFDGLA 124
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVL--NIKYPPELLEVRCEVLIYK 188
++LRYE G L QASTRGDG GE++T+NI + IPL L + P +LEVR EVL+ +
Sbjct: 125 ISLRYEQGLLVQASTRGDGTTGEDVTSNIRTVKSIPLRLRGDAAQLPAVLEVRGEVLMNR 184
Query: 189 KDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELR------- 241
DF +LN+ + G K F NPRNAAAG LRQL+PK+ + L FFA+G GE+
Sbjct: 185 ADFERLNESQLKRGEKVFVNPRNAAAGSLRQLDPKVTAKRPLRFFAYGWGEISPLPLTNQ 244
Query: 242 ----------GMNMP-SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNL 290
G +P + S +++W + +GL + + ++ GV L++FY + +R L
Sbjct: 245 PQNTLFADVTGDGLPRDTQSGMMDWLESLGLPLSRDRKLVKGVQGLLDFYTQTQERRSGL 304
Query: 291 PYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPV 350
P+EIDGVVYK+N L+ Q+ LG+ +RAPRFA+A+KF ++E +T+++ I Q+GRTG++TPV
Sbjct: 305 PFEIDGVVYKVNSLAAQRVLGYVARAPRFAVAHKFPAQEEMTRVENIEFQVGRTGVVTPV 364
Query: 351 ALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSK 410
A LKPV + G+T+T ATLHNE E+ RK+++ GDTVVV R+G+VIP++ + +L RP DS
Sbjct: 365 ARLKPVFVGGVTVTNATLHNEDEVRRKDVRAGDTVVVRRAGDVIPEVVAVVLEQRPQDSV 424
Query: 411 IFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMI 470
F++ CP C+S + +E RC+G I C AQRK L H +SRKA++I GLG+K++
Sbjct: 425 PFEMVKECPACHSALERLEGESAWRCTGGLI-CPAQRKQTLIHAASRKALDIEGLGEKLV 483
Query: 471 EKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRH 530
++LV +V T D++K+ + L+ L+R+ K A N++ AI K + +R IYALGIRH
Sbjct: 484 DQLVETGLVHTLADIFKLKVEKLVLLERMGRKSAENLIEAINKVREPALNRLIYALGIRH 543
Query: 531 VGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDV 590
VGETTA++LA +F L+ + +A EE LL + ++G + F +P +R + L
Sbjct: 544 VGETTARDLAQHFGTLQALEQADEEALLQVNEVGPVVAASVRHFFQEPHNREALDALLAA 603
Query: 591 GI------YWLNNPN---------------------------TKGGKVVNFISKNTNYLV 617
G+ N+ N GGK +SK T +++
Sbjct: 604 GVSPQQAQARANSANLPLAGKTVVITGTLPSMSRDEATRRVLEAGGKASGSVSKKTAFVL 663
Query: 618 KGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 648
G + G KL KA +L + ILDE F+ ++ G
Sbjct: 664 AGAEAGSKLTKAQELGVTILDEAQFLALLAG 694
>gi|421482760|ref|ZP_15930340.1| DNA ligase [Achromobacter piechaudii HLE]
gi|400199071|gb|EJO32027.1| DNA ligase [Achromobacter piechaudii HLE]
Length = 700
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 288/684 (42%), Positives = 419/684 (61%), Gaps = 60/684 (8%)
Query: 24 ELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYV 83
EL +HN+ YY+YD P ISD +YD L+ +L+ +E ++PEL+T +S TQ VG V
Sbjct: 20 ELEQHNVRYYVYDEPSISDAEYDGLMRQLEALEAEHPELVTPESPTQRVGAAPVSAFGSV 79
Query: 84 HHTFKMMSLDNGFSDEDVIIFNKRITNELK------LTKNIEYIAELKFDGIAVNLRYEY 137
H M+SL+N F +E+V F++R+T+ L+ + +Y ELK DG+A++LRYE
Sbjct: 80 RHVVPMLSLNNAFDEEEVAAFDRRVTDTLRGAGLLGPAQQADYFCELKLDGLAISLRYED 139
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L QA+TRGDG GE++T+NI I IPL L P++LEVR EVL+ + DF KLN
Sbjct: 140 GRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLK-GAAPKVLEVRGEVLMNRADFEKLNVA 198
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN------------- 244
+ K F NPRNAAAG LRQL+P+I + L FFA+G GE++G+
Sbjct: 199 QAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGEVQGLPGAQNGLFDETSAG 258
Query: 245 ------MPS-SHSELLNWYQKIGLSICGEYS-VLSGVNKLIEFYKKINIKRFNLPYEIDG 296
+P SH +L W ++GL + ++ +G L+ FY K+ R LPY+IDG
Sbjct: 259 AGQASVLPEKSHGAMLAWLHELGLPVNLMHNHRATGAEGLMAFYAKVGAMRATLPYDIDG 318
Query: 297 VVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPV 356
VVYK++ L QK LGF +RAPRFALA+KF ++EA T + I +Q+GRTG ITPVA LKPV
Sbjct: 319 VVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEATTTLLDIEVQVGRTGAITPVARLKPV 378
Query: 357 LIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPN 416
+ G+T+T ATLHNE EI RK+++IGDTV+V R+G+VIP++ +L RP+D++ F +P
Sbjct: 379 FVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVLGPVLEKRPDDAREFVMPT 438
Query: 417 ICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNA 476
CP+C S I +E IARC+G C AQRK L H +SRKA++I GLG+K++++LV++
Sbjct: 439 ACPVCGSAIERLEDETIARCTGGLF-CGAQRKQTLWHAASRKALDIEGLGEKLVDQLVDS 497
Query: 477 NIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTA 536
V T DLY + L+ LDR+ K A+N++ AI+K++ R ++ALGIRHVGETTA
Sbjct: 498 GRVKTLADLYSLRPLELVGLDRMGQKSADNLVAAIEKAREPGLGRLLFALGIRHVGETTA 557
Query: 537 KELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN 596
+++A +F +++ + A E+ L ++P +G + +F + +R +I QL+ G+ +
Sbjct: 558 RDVARHFGSIDAIMDADEDALSSVPDVGPVVAASIRRFFAEQHNRDVIEQLKAQGVNPVA 617
Query: 597 N-------------------PN-----------TKGGKVVNFISKNTNYLVKGQKPGKKL 626
PN GGKV +SK T YLV G++ G KL
Sbjct: 618 EAVPQGTTLAGKTFVLTGTLPNWTREEASMHIQAAGGKVSGSVSKKTAYLVAGEEAGSKL 677
Query: 627 EKAIKLNIKILDEKNFVKIVKGFS 650
KA +L + +LDE + +K + G S
Sbjct: 678 TKAQELGVTVLDE-DALKALLGMS 700
>gi|292491548|ref|YP_003526987.1| DNA ligase, NAD-dependent [Nitrosococcus halophilus Nc4]
gi|291580143|gb|ADE14600.1| DNA ligase, NAD-dependent [Nitrosococcus halophilus Nc4]
Length = 675
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 283/658 (43%), Positives = 410/658 (62%), Gaps = 34/658 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV L+K ++ +N YY+ D+P++ D++YD+L+ EL+ +E +YPEL+ DS TQ VG
Sbjct: 10 RVETLRKLINDYNYNYYVLDSPVVPDSEYDRLMRELQNLEAQYPELVVPDSPTQRVGAEP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL+N FS+E++ F++R+ L + + +EY AE K DG+AV+L Y+
Sbjct: 70 LKALGEVKHEIPMLSLNNAFSEEELADFHRRVKERLGI-EQVEYAAEPKLDGLAVSLLYQ 128
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L Q +TRGDG GE++T N+ I + L L P LLEVR EV + K+ F +LN+
Sbjct: 129 EGILVQGATRGDGVTGEDVTHNVRTIPTVSLHLRGDKIPSLLEVRGEVYMPKEGFERLNR 188
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I ++ L F +GVG++ +P HSE+L
Sbjct: 189 EHLAKGEKTFVNPRNAAAGSLRQLDPRIAASRPLAIFCYGVGKVEQGTLPQRHSEVLARL 248
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL V++G+ E+Y+++ +R LPYEIDGVV+K++ ++ LGF +RA
Sbjct: 249 KQWGLRTPPHVEVVAGLAGCQEYYQRLLERRDGLPYEIDGVVFKVDRFDQRQALGFVARA 308
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E LT+I I +Q+GRTG +TPVA L+PV + G+T++ ATLHNE EI R
Sbjct: 309 PRWAIAYKFPAQEELTQILDIEVQVGRTGALTPVARLQPVFVGGVTVSNATLHNEDEIRR 368
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+++IGDTV V R+G+VIP++ IL RP D++ F++P CPIC S++I E IARC
Sbjct: 369 KDVRIGDTVYVRRAGDVIPEVVKVILDHRPPDARFFQMPTQCPICGSEVIKDEGGAIARC 428
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG + C AQRK ++HF+SR+AM+I GLG K++++L+ +V DLY + + L L
Sbjct: 429 SGG-LYCPAQRKEAIKHFASRRAMDINGLGDKLVDQLIERELVEDVADLYHLTAEQLAGL 487
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ AI+ SK TT RF+YALGIR VGE TA+ LA F +LE + A+EE+
Sbjct: 488 ERMGQKSAANLMHAIEASKHTTLPRFLYALGIREVGEATAQALAEEFNSLEALEGASEER 547
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------- 601
L + IG F QP +R +I +LR+ G+ W K
Sbjct: 548 LQEVTDIGPVVATHIAAFFRQPHNRQVIQRLREAGVCWPEKEGKKPIPQPLSGKTFVLTG 607
Query: 602 -----------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
GGKV + +S NT+YLV G PG KL KA L+I +LDE NF
Sbjct: 608 TLESMTREQAKERLQALGGKVTSSVSSNTDYLVVGTNPGSKLTKAKDLHITLLDEGNF 665
>gi|410693767|ref|YP_003624388.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Thiomonas sp.
3As]
gi|294340191|emb|CAZ88563.1| DNA ligase (Polydeoxyribonucleotide synthase [NAD+]) [Thiomonas sp.
3As]
Length = 686
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 280/679 (41%), Positives = 415/679 (61%), Gaps = 45/679 (6%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
F++ + R T+L+ E+ R + AYY+ D P+ D YD L EL++IE +PEL T DS TQ
Sbjct: 7 FAQPAERATQLRAEIARLDHAYYVLDAPLAPDADYDALFRELQQIEADHPELRTPDSPTQ 66
Query: 71 HVGLVGGENSKYVHHTFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELK 125
VG V H M+S+ + + E F++R+ N L L+ + + Y AELK
Sbjct: 67 RVGGAPLPEFAPVRHAVPMLSIQTETDTTPEGAAAFDQRVRNRLGLSADDPPVNYCAELK 126
Query: 126 FDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVL 185
FDG+A++LRYE+G L QA+TRGDG GE++T N+ I +PL L P +LEVR EVL
Sbjct: 127 FDGLAISLRYEHGQLVQAATRGDGETGEDVTQNVRTIRSVPLQLRGNAP-AVLEVRGEVL 185
Query: 186 IYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG-MN 244
+ + DF + N + GL NPRN AAG +RQL+P I + L F+A+G GE+ G
Sbjct: 186 MKRADFERYNARQRDKGLPTLVNPRNGAAGSIRQLDPAIAAQRPLAFYAYGWGEIAGWAQ 245
Query: 245 MPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCL 304
P +H +L+ + GL + + G LI+F+ +I R +LP++IDGVVYK++ L
Sbjct: 246 QPDTHHAMLDALETFGLPVAPQRVHGPGAQTLIDFHARIAAARDSLPFDIDGVVYKVDSL 305
Query: 305 STQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITIT 364
+ Q++LGF +R P +A+A+K+ ++E TK+ I+IQ+GRTG +TPVA L+PV + G+T+T
Sbjct: 306 ALQRELGFRNREPVWAVAHKYPAQERSTKVIGIDIQVGRTGKLTPVAKLEPVFVGGVTVT 365
Query: 365 RATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPND-SKIF----KIPNICP 419
ATLHNE E+ RK++++GDTV+V R+G+VIP++ S +LS RP D + F ++ CP
Sbjct: 366 NATLHNEDEVRRKDVRVGDTVIVRRAGDVIPEVVSVVLSARPADVGEPFDLYQRLGGQCP 425
Query: 420 ICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIV 479
+C S I+ RC+G C AQRK + H++SR+AM+I GLG+K++++LV+A IV
Sbjct: 426 VCGSAIVREAGEADWRCTGGLF-CAAQRKQAILHYASRRAMDIEGLGEKLVDQLVDAGIV 484
Query: 480 VTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKEL 539
DLY++ L LDR++ K A N+L A+Q SK TT +RF+YALGIRHVGE TAK+L
Sbjct: 485 RVLPDLYRLGLLKLAALDRMAEKSAANLLQALQASKTTTLARFLYALGIRHVGEATAKDL 544
Query: 540 ANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----- 594
A +F L+ + A EQLL +P +G ++ F +QP +R ++ QLR G++W
Sbjct: 545 ARHFGGLDAILDAPLEQLLEVPDVGPVVAQSIRTFFDQPHNREVVEQLRACGVHWSEAAP 604
Query: 595 ---------------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLE 627
L+ K GGKVV +SK T+Y+V G + G KL
Sbjct: 605 DRDAPKPLAGKTLVLTGTLPTLSREEAKARIEAAGGKVVGSVSKKTDYVVAGAEAGSKLA 664
Query: 628 KAIKLNIKILDEKNFVKIV 646
KA +L + +LDE +K++
Sbjct: 665 KAQELGVTVLDEAELLKLL 683
>gi|88810628|ref|ZP_01125885.1| DNA ligase, NAD-dependent [Nitrococcus mobilis Nb-231]
gi|88792258|gb|EAR23368.1| DNA ligase, NAD-dependent [Nitrococcus mobilis Nb-231]
Length = 672
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 273/670 (40%), Positives = 412/670 (61%), Gaps = 34/670 (5%)
Query: 8 KINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDS 67
++ + + RV L+ ++ +HN Y++ D+P +SD YD L+ EL+ +E +P+L++ DS
Sbjct: 3 RVERAAVERRVAALRDQIEQHNYRYFVLDDPQVSDADYDVLMRELQALEADHPDLVSPDS 62
Query: 68 LTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFD 127
TQ VG E H M+SLDN F ++ F++RI L + + I Y+AE K D
Sbjct: 63 PTQRVGAKPVEAFGEARHGVPMLSLDNAFDAGELGEFDRRIRERLGINR-IAYMAEPKLD 121
Query: 128 GIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIY 187
G++VNLRYE G L Q TRGDG +GE+IT NI + IPL L K PEL+EVR E++I
Sbjct: 122 GLSVNLRYEQGRLVQGGTRGDGQVGEDITANIRTLRTIPLRLRGKGWPELIEVRGEIVIR 181
Query: 188 KKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPS 247
K DF LN R G + F NPRNAAAG LRQL+P++ + L FFA G+GE R + +
Sbjct: 182 KADFKHLNTLRLEAGERLFANPRNAAAGSLRQLDPRVTARRPLTFFAFGIGESREV-IAG 240
Query: 248 SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQ 307
S++L G + V+SGV + + +Y+++ +R LP+EIDG VYK++ LS+Q
Sbjct: 241 RQSQILERLHGWGFPVYERVQVVSGVEECLAYYRRLMAQRETLPFEIDGTVYKVDDLSSQ 300
Query: 308 KKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRAT 367
++LGFT+RAPR+A+AYK ++E L+ + I +GRTG+ITPVA L+PV + G+ + AT
Sbjct: 301 QRLGFTARAPRWAVAYKLPAREGLSVVLDIEPSVGRTGVITPVARLEPVPLGGVIVRHAT 360
Query: 368 LHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIY 427
LHNE E+ RK+++IGDTV++ R+G+VIP+I RP ++ +++P CP+C+++++
Sbjct: 361 LHNEDEVRRKDVRIGDTVMLRRAGDVIPEIIGVQPEKRPQGAQPWRMPLKCPVCSAEVMR 420
Query: 428 IESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYK 487
+E RC G + C AQR + HF+SR+AM+I GLG+K++E+LV +V T DLY
Sbjct: 421 LEHQAAHRCLGG-LYCAAQRTGAILHFASRRAMDIDGLGEKLVEQLVGRGLVATVADLYS 479
Query: 488 INFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLE 547
+ L+ L+R+ + A N+L AI S+ TT +RF+YALGI VGE TAK LA ++ +L+
Sbjct: 480 LERAQLVELERMGERSAGNLLRAIDASRATTLARFLYALGIPEVGEVTAKRLAEHYGDLD 539
Query: 548 CMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL----NNPNTK-- 601
+ +ATEE L +P IG + F QP +R +I LR G++W N +T
Sbjct: 540 PLERATEEALTRLPDIGPVLAQRITHFFAQPHNREVIDALRRSGLHWSVPDGANQSTPLA 599
Query: 602 -------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
GG+V +SKNT+Y++ G+ PG K +KA++L I +
Sbjct: 600 GRVFVLTGTLKGYTREEAQERIEALGGRVTGHVSKNTDYMIVGEAPGSKRDKAVQLGITL 659
Query: 637 LDEKNFVKIV 646
LDE F +++
Sbjct: 660 LDESGFRQLI 669
>gi|253996456|ref|YP_003048520.1| NAD-dependent DNA ligase [Methylotenera mobilis JLW8]
gi|253983135|gb|ACT47993.1| DNA ligase, NAD-dependent [Methylotenera mobilis JLW8]
Length = 677
Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust.
Identities = 279/670 (41%), Positives = 415/670 (61%), Gaps = 34/670 (5%)
Query: 9 INFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSL 68
+ S RV EL+ + R++ YY+ D P + D++YD++ EL+ +E+ YP L+ DS
Sbjct: 4 LKLSSAELRVLELRGLIARYDYEYYVLDAPSVPDSEYDKIYRELQTLEQAYPSLVVADSP 63
Query: 69 TQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDG 128
TQ V + H M+SL+N F ++ F+KRI L + + +EY E KFDG
Sbjct: 64 TQRVSGTATNAFGSITHRQAMLSLNNAFEQSELEAFDKRIREALGVAQ-VEYAVEPKFDG 122
Query: 129 IAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYK 188
+A+ L YE+G Q +TRGDG GE++T N+ + IP+ LN + PP+LLEVR EVL+ K
Sbjct: 123 LAITLTYEHGVFIQGATRGDGYTGEDVTHNLRTLRAIPMRLNCENPPQLLEVRGEVLMLK 182
Query: 189 KDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSS 248
+DF KLN+ + G K F NPRNAAAG LRQL+ K+ + L FFA+G+G G+ +S
Sbjct: 183 RDFDKLNQAQLAKGEKLFANPRNAAAGSLRQLDAKVTATRPLTFFAYGLGVAEGVPALTS 242
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
H +++ + + +V+ GV L ++Y+KI +R LP++IDGVVYK+N + Q
Sbjct: 243 HGAAMDYLASLHFPVSSARAVVRGVQGLSDYYEKIGQQRQQLPFDIDGVVYKVNQFNQQN 302
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
+LGF SRAPR+A+A+KF ++EALT ++ I +Q+GRTG ITPVA LKPV + G+T+T ATL
Sbjct: 303 ELGFVSRAPRWAVAHKFPAQEALTLVEDITVQVGRTGAITPVARLKPVFVGGVTVTNATL 362
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYI 428
HNE EI RK+I IGDTV V R+G+VIP++ S ++ RP ++ F++P +CP C S I+
Sbjct: 363 HNEDEIRRKDILIGDTVSVRRAGDVIPEVVSVVVEKRPAHARRFEMPTVCPECGSHILKQ 422
Query: 429 ESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488
+ARC+G C AQRK + H++SR+AM+I GLG+K++++LV AN+V T D+Y +
Sbjct: 423 ADEAVARCTGGLF-CPAQRKQAITHYASRRAMDIEGLGEKLVDQLVEANLVHTLADVYSL 481
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
+ L L+R++ K A NIL A+ SK TT +RFIYALG+R+VGE TAK+LA +F NL
Sbjct: 482 DIHTLSNLERMAEKSAQNILDALNASKDTTLARFIYALGMRNVGEATAKDLAKHFGNLNA 541
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNN----------- 597
+ A+ E LL + +G ++ F ++ ++ +I+ L + GI+W+
Sbjct: 542 LMAASIEDLLEVNDVGPIVAESIKNFFSEEHNKSVIAALLNAGIHWVETEGKQQATGNLV 601
Query: 598 ----------PN-----------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
PN GGKV +SK T+++V G G KLEKA L + I
Sbjct: 602 GKTFVLTGTLPNLARDDAKALIEAAGGKVSGSVSKKTDFVVAGADAGSKLEKAQLLGVAI 661
Query: 637 LDEKNFVKIV 646
+DE N + ++
Sbjct: 662 IDEANLLAVL 671
>gi|153872826|ref|ZP_02001606.1| NAD-dependent DNA ligase [Beggiatoa sp. PS]
gi|152070708|gb|EDN68394.1| NAD-dependent DNA ligase [Beggiatoa sp. PS]
Length = 670
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 286/666 (42%), Positives = 415/666 (62%), Gaps = 34/666 (5%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
++ + T+L+ L++ N YY+ D P I D++YD+L+ EL +EE YP L+T DS TQ V
Sbjct: 6 QIQQQATQLRDTLNKQNYYYYVLDEPRIPDSEYDKLMRELHALEENYPALITADSPTQRV 65
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
G V HT M+SL+N F D++V F+KR+ L + +EY+AE K DG+A++
Sbjct: 66 GAKPLTAFSEVIHTIPMLSLNNAFDDKEVQDFDKRVRERLG-GEPVEYVAEPKLDGLAIS 124
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
LRYE G L +A+TRGDG+ GE++T N+ I IPL L P +LEVR EV + K DF
Sbjct: 125 LRYENGLLVKAATRGDGHQGEDVTQNVKTIKTIPLRLLGDDYPRVLEVRGEVFMSKADFE 184
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
KLN+ + G K F NPRNAAAG LRQL+ ++ + L F A+ +G + G +P H+++
Sbjct: 185 KLNQQQTLQGQKTFANPRNAAAGSLRQLDSRVTATRSLTFLAYTIGVVEGGELPHRHNKI 244
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
L QK G+ I ++ + +++Y+ + R LP+EIDGVVYK+N L Q+ LGF
Sbjct: 245 LYTLQKWGIPISIYIEMVHDIQGCLKYYQNTLLYREKLPFEIDGVVYKVNSLEQQEILGF 304
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
SRAPR+A+A+K ++E LT++ AI++Q+GRTG +TPVA L PV + G+T+T ATLHN+
Sbjct: 305 VSRAPRWAIAHKLPAQEVLTEVLAIDVQVGRTGALTPVARLAPVTVGGVTVTNATLHNQD 364
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
EI RKNI++GDTV+V R+G+VIP+I + RPN+++ F +P CPIC+S + +E
Sbjct: 365 EIDRKNIRVGDTVIVRRAGDVIPEIVGVLPEKRPNNTQPFVLPKKCPICDSDVTRVEGEA 424
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
+ARC+G + C AQRK +QHF+SR+AM+I GLG+K++E+L+N +V D+Y +N +
Sbjct: 425 VARCTGG-LYCAAQRKQAIQHFASRRAMDIDGLGEKLVEQLINNELVKNIADIYTLNHEQ 483
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
L+R+ K A NI+ A++KS+ TTF++F+YALGIR VGE+TA LA F LE + A
Sbjct: 484 WANLERMGPKSAENIIKALEKSQSTTFAKFLYALGIREVGESTAHTLAQSFGRLEKLIPA 543
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
TE L I IG K + F Q +R +I +L+ +GI+W N T
Sbjct: 544 TEADLEQIQDIGPIVAKHIVTFFQQSHNREIIQRLQQIGIHWPENEPTSTNTQPLSGQTF 603
Query: 602 ---------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
G KV +SK T +V G+K G KLEKA L IKI+DE
Sbjct: 604 VLTGTLTNITRHEAKARLEALGAKVSGSVSKKTACVVAGEKAGSKLEKARTLGIKIIDEN 663
Query: 641 NFVKIV 646
F+ ++
Sbjct: 664 AFLALL 669
>gi|30249713|ref|NP_841783.1| NAD-dependent DNA ligase [Nitrosomonas europaea ATCC 19718]
gi|75540341|sp|Q82TW6.1|DNLJ_NITEU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|30180750|emb|CAD85664.1| NAD-dependent DNA ligase [Nitrosomonas europaea ATCC 19718]
Length = 681
Score = 559 bits (1441), Expect = e-156, Method: Compositional matrix adjust.
Identities = 277/673 (41%), Positives = 415/673 (61%), Gaps = 41/673 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ L+ + H+ YY+ D P+I D +YD L L+++E++YP L+T DS TQ VG
Sbjct: 10 RLQALRAAIALHDFHYYVQDAPVIPDAEYDALFRTLQQLEQQYPHLVTPDSPTQRVGAPP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + H M+SL N FS+E+V F++RI L + + ++Y E KFDG+A++L Y
Sbjct: 70 LKVFAQLTHQTPMLSLANAFSEEEVTAFDRRIREALNIDR-VDYAVEPKFDGLAISLIYA 128
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L + +TRGDG GE+IT N+ I IPL L + +P EVR EV++ K DF +LN+
Sbjct: 129 NGILTKGATRGDGYTGEDITLNLRTIPSIPLRLQVPFPTGQFEVRGEVVMLKTDFERLNE 188
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP--SSHSELLN 254
+ G K F NPRNAAAG LRQL+ +I + L FFA+G+G + P S+HSE+L
Sbjct: 189 QQRKNGEKTFVNPRNAAAGSLRQLDSRITAMRRLTFFAYGIGAYH-EDQPIFSTHSEILA 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
+ + + S + G N L+ +Y+++N R +LPYEIDGVVYK+N L+ Q+KLG+ S
Sbjct: 248 YLATQQFLVARQSSTVMGANGLLAYYREMNAVRLSLPYEIDGVVYKVNDLAQQEKLGYVS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPRFA+A+KF ++E T++ AI IQ+GRTG +TPVA L PV + G+T+T ATLHNE E+
Sbjct: 308 RAPRFAIAHKFPAQEVSTELLAIEIQVGRTGALTPVARLAPVFVGGVTVTNATLHNEDEV 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
RK I IGDTV+V R+G+VIP++ + I+ RP ++ F +P+ CP+C SK + + +
Sbjct: 368 QRKQIMIGDTVIVRRAGDVIPEVVAVIVERRPTHAQAFVMPDHCPVCGSKAVRLPDEAVT 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+G + C AQRK + HF+SR+A++I GLG+K++++L++ +V T DLY+++ L
Sbjct: 428 RCTGG-LYCPAQRKQAILHFASRRAIDIDGLGEKLVDQLIDRELVHTPADLYRLDIDTLA 486
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
L+R++ K A N++ AI+ SK TT RFIYALGIRHVGE TAK LA++ +L+ +
Sbjct: 487 GLERMAGKSARNLVTAIEDSKKTTLPRFIYALGIRHVGEATAKALASHTGDLDRLMDMNA 546
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-----LNNPNTK-------- 601
EQL IP IG ++ F ++ +R +I QL G+ W + P+++
Sbjct: 547 EQLQQIPDIGPIVAQSIADFFSEAHNREVIEQLLSCGLQWEKPSHIAQPSSRTNLAVPGK 606
Query: 602 -----------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
GGKV +S T+Y+V G PG K +AI+L I +LD
Sbjct: 607 TFVLTGTLPTMTRDQAKNRIEQQGGKVTGSVSSATSYVVAGSDPGSKYARAIELGIPVLD 666
Query: 639 EKNFVKIVKGFST 651
E + +++ S+
Sbjct: 667 EDQLLSLLRDTSS 679
>gi|163856016|ref|YP_001630314.1| DNA ligase [Bordetella petrii DSM 12804]
gi|254781264|sp|A9II69.1|DNLJ_BORPD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|163259744|emb|CAP42045.1| DNA ligase [Bordetella petrii]
Length = 697
Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust.
Identities = 275/683 (40%), Positives = 411/683 (60%), Gaps = 59/683 (8%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV L+ E+ +HN+ YY++D+P +SD +YD L+ EL ++E +PEL+T +S TQ VG
Sbjct: 11 RVAALRNEIEQHNVRYYVHDDPSVSDAEYDALMRELIQLETDHPELVTPESPTQRVGAAP 70
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK------LTKNIEYIAELKFDGIA 130
V H M+SL N F ++V F++R+ + L+ + + EY ELK DG+A
Sbjct: 71 LAAFGSVRHAVPMLSLGNAFDPDEVQAFDRRVGDTLRGAGLLRVDQQPEYFCELKLDGLA 130
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
++LRYE G L QA+TRGDG GE++T N+ I +PL L P +LEVR EVL+ + +
Sbjct: 131 ISLRYEDGVLVQAATRGDGQTGEDVTANVRTIRAVPLRLK-GAAPRVLEVRGEVLMNRAE 189
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM------- 243
F +LN+ + K F NPRNAAAG LRQL+P+I + L FFA+ GE+ G+
Sbjct: 190 FDRLNRSQAARDEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHGLPGRQTAL 249
Query: 244 ------------NMP-SSHSELLNWYQKIGLSICGEYSVLS-GVNKLIEFYKKINIKRFN 289
+P +H +L+W ++GL + ++ + G L+ FY+++ +R
Sbjct: 250 FDEPAPGAREESTLPRDTHGAMLDWLAELGLPVNTRHNRRAVGAEGLLAFYEQVGRERPG 309
Query: 290 LPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITP 349
LPY+IDGVVYK+N L QK LGF +RAPRFALA+KF ++EA T++ I +Q+GRTG ITP
Sbjct: 310 LPYDIDGVVYKVNSLPAQKVLGFVARAPRFALAHKFPAEEATTRLLDIEVQVGRTGAITP 369
Query: 350 VALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDS 409
VA L+PV + G+T+T ATLHNE E+ RK+++IGDTV V R+G+VIP++ + RP D+
Sbjct: 370 VARLQPVFVGGVTVTNATLHNEDEVRRKDVRIGDTVTVRRAGDVIPEVVGPVPGKRPADA 429
Query: 410 KIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKM 469
+ F +P CP+C S I E IARC+G C AQRK L H + RKA++I GLG+K+
Sbjct: 430 REFVMPVSCPVCGSAIERPEDEAIARCTGGLF-CAAQRKQTLLHAAGRKALDIDGLGEKL 488
Query: 470 IEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIR 529
I++LV++ V + DLY +N L L+R+ K A+N++ AI +++ + R ++ALGIR
Sbjct: 489 IDQLVDSGRVKSLADLYSLNAFELAALERMGKKSADNLVAAIDRARTPSLGRLLFALGIR 548
Query: 530 HVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRD 589
HVGETTA+++A +F ++E + A EE L P +G + +F +P +R +I L+
Sbjct: 549 HVGETTARDVARHFGSIETIMDADEEALAGAPDVGPVVAGSIRRFFAEPHNREIIDLLKA 608
Query: 590 VGIY-------------------------WLNNPNTK-----GGKVVNFISKNTNYLVKG 619
G++ W + T+ GGKV +SK T Y+V G
Sbjct: 609 QGVHPVPEAGPQGNTLAGKTFVLTGTMPNWTRDEATRHILAAGGKVSGSVSKKTAYVVAG 668
Query: 620 QKPGKKLEKAIKLNIKILDEKNF 642
++ G KL KA +L + +LDE
Sbjct: 669 EEAGSKLAKAQELGVTVLDEDGL 691
>gi|91775756|ref|YP_545512.1| DNA ligase, NAD-dependent [Methylobacillus flagellatus KT]
gi|123254532|sp|Q1H1G6.1|DNLJ_METFK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|91709743|gb|ABE49671.1| DNA ligase, NAD-dependent [Methylobacillus flagellatus KT]
Length = 693
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 280/679 (41%), Positives = 419/679 (61%), Gaps = 46/679 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+ L+ +V L+ + R++ YY+ + P + D++YD++ ELK +E+ +PEL+T DS TQ
Sbjct: 15 AGLAEKVEALRATIRRYDYEYYVLNAPSVPDSEYDRVFRELKALEDAHPELVTPDSPTQR 74
Query: 72 VGLVGGENSKYVHHTFKMMSLDN--GFSDEDVIIFNKRITNELKLTKN---IEYIAELKF 126
VG V H M+S++ + + F+ R+ +L L IEY AELKF
Sbjct: 75 VGGAAMAELMPVRHHVPMLSIETETDTTPQGAYNFDARVRKKLGLLPEDGPIEYAAELKF 134
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+A++LRYE+G L QA+TRGDG +GE++T NI + +IPL L+ + P E+LEVR EV +
Sbjct: 135 DGLAMSLRYEHGLLVQAATRGDGEVGEDVTHNIRTMRQIPLQLHGEAP-EVLEVRGEVYM 193
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
+ DF + N + G NPRN AAG +RQL+P++ + L FFA+G+GE +G +P
Sbjct: 194 SRPDFERYNARQREHGKPTLVNPRNGAAGSIRQLDPRLAAQRPLSFFAYGLGETKGWQVP 253
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
+H+++L+ + +GL +C E +V G L F++ I+ KR LPY+IDGVVYK+N L
Sbjct: 254 LTHAQVLDALKALGLPVCNERAVGMGAEALAAFHQAISAKRDQLPYDIDGVVYKVNRLDL 313
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q++LGF SR P +A+A+KF ++E +T ++ I++Q+GRTG ITPVA LKPV + G+T+T A
Sbjct: 314 QRELGFRSREPNWAVAHKFPAQEEMTVLEHIDVQVGRTGAITPVARLKPVFVGGVTVTNA 373
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIF----KIPNICPICN 422
TLHN+ EI RK+++IGDTVVV R+G+VIP++ S I RP S+ + I +CP+C
Sbjct: 374 TLHNQDEIDRKDVRIGDTVVVRRAGDVIPEVVSVIKERRPAGSQPYILLDAIGGLCPVCG 433
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
S + + RC+G C AQRK + HF+SR+AM+I GLG+K++++LV+ N+V T
Sbjct: 434 SHAVRLPEEAAVRCTGGLF-CAAQRKQAILHFASRRAMDIEGLGEKLVDQLVDQNMVETL 492
Query: 483 VDLY---KINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKEL 539
DLY KIN + L LDR++ K A N+L A+QKSK T +RFIYALGIR+VGE TAK+L
Sbjct: 493 ADLYDPGKINLETLSGLDRMAMKSAQNLLDALQKSKQATLNRFIYALGIRNVGEATAKDL 552
Query: 540 ANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPN 599
A +F L+ + A + L +P +G ++ +F + +R +I +LRD GI+W
Sbjct: 553 ARHFGRLDALQAADVDTLQQVPDVGPVVARSIAEFFAEEHNREVIRKLRDAGIHWSETDG 612
Query: 600 --------------------------------TKGGKVVNFISKNTNYLVKGQKPGKKLE 627
GGKV +SK T+Y+V G G KL
Sbjct: 613 QPASSSKLEGKTFVLTGTLPTMSRDEAKEKIEAAGGKVSGSVSKKTSYVVAGSDAGSKLA 672
Query: 628 KAIKLNIKILDEKNFVKIV 646
KA +L + ILDE+ + ++
Sbjct: 673 KAQELGLAILDEEGLLSLL 691
>gi|296135970|ref|YP_003643212.1| NAD-dependent DNA ligase [Thiomonas intermedia K12]
gi|295796092|gb|ADG30882.1| DNA ligase, NAD-dependent [Thiomonas intermedia K12]
Length = 688
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 274/671 (40%), Positives = 410/671 (61%), Gaps = 45/671 (6%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
F++ + R +L+ E+ R + AYY+ D P+ D YD L EL++IE +PEL T DS TQ
Sbjct: 7 FAQPAERAAQLRAEIARLDHAYYVLDAPLAPDADYDALFRELQQIEADHPELRTPDSPTQ 66
Query: 71 HVGLVGGENSKYVHHTFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELK 125
VG V H M+S+ + + E + F++R+ N L L+ + + Y AELK
Sbjct: 67 RVGGAPLPEFAPVRHAVPMLSIQTETDTTPEGAVAFDQRVRNRLGLSADDPPVNYCAELK 126
Query: 126 FDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVL 185
FDG+A++LRYE+G L QA+TRGDG GE++T N+ I +PL L PP +LEVR E L
Sbjct: 127 FDGLAISLRYEHGQLVQAATRGDGETGEDVTQNVRTIRSVPLQLR-GNPPAVLEVRGEAL 185
Query: 186 IYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG-MN 244
+ + DF + N + GL NPRN AAG +RQL+P I + L F+A+G GE+
Sbjct: 186 MKRADFERYNARQRDKGLPTLVNPRNGAAGSIRQLDPAIAAQRPLAFYAYGWGEIADWAQ 245
Query: 245 MPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCL 304
P +H +L+ ++ GL + + G LI+F+ +I R +LP++IDGVVYK++ L
Sbjct: 246 QPDTHHAMLDAFETFGLPVAPQRVHGPGAQTLIDFHARIAAARDSLPFDIDGVVYKVDSL 305
Query: 305 STQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITIT 364
+ Q++LGF +R P +A+A+K+ ++E TK+ I+IQ+GRTG +TPVA L+PV + G+T+T
Sbjct: 306 ALQRELGFRNREPVWAVAHKYPAQERSTKVIGIDIQVGRTGKLTPVAKLEPVFVGGVTVT 365
Query: 365 RATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPND-SKIF----KIPNICP 419
ATLHNE E+ RK++++GDTV+V R+G+VIP++ S ++S RP D + F ++ CP
Sbjct: 366 NATLHNEDEVRRKDVRVGDTVIVRRAGDVIPEVVSVVMSARPADVGEPFDLYQRLGGQCP 425
Query: 420 ICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIV 479
+C S I+ RC+G C AQRK + H++SR+AM+I GLG+K++++LV+A IV
Sbjct: 426 VCGSAIVREAGEADWRCTGGLF-CAAQRKQAILHYASRRAMDIEGLGEKLVDQLVDAGIV 484
Query: 480 VTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKEL 539
DLY++ L LDR++ K A N+L A+Q SK TT +RF+YALGIRHVGE TAK+L
Sbjct: 485 RVLPDLYRLGLLKLAALDRMAEKSAANLLQALQASKTTTLARFLYALGIRHVGEATAKDL 544
Query: 540 ANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----- 594
A +F L+ + A+ EQLL +P +G ++ F +QP +R ++ QLR G++W
Sbjct: 545 ARHFGGLDAILDASLEQLLEVPDVGPVVAQSIRTFFDQPHNREVVEQLRACGVHWSEAAP 604
Query: 595 ---------------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLE 627
L+ K GGKV +SK T+Y+V G + G KL
Sbjct: 605 DRDAPKPLAGKTLVLTGILPTLSREEAKARIEAAGGKVAGSVSKKTDYVVAGAEAGSKLA 664
Query: 628 KAIKLNIKILD 638
KA +L + +LD
Sbjct: 665 KAQELGVTVLD 675
>gi|398806834|ref|ZP_10565733.1| DNA ligase, NAD-dependent [Polaromonas sp. CF318]
gi|398087199|gb|EJL77796.1| DNA ligase, NAD-dependent [Polaromonas sp. CF318]
Length = 701
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 284/675 (42%), Positives = 411/675 (60%), Gaps = 49/675 (7%)
Query: 24 ELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYV 83
ELH H+ YY+ D P I D +YD+L EL+++E +PELLT DS TQ VG + V
Sbjct: 29 ELHLHSHRYYVLDEPTIPDAEYDRLFRELQELEAAHPELLTPDSPTQRVGGKPLDQFASV 88
Query: 84 HHTFKMMSLDNGFSDEDVII--FNKRITNELKLTKN---IEYIAELKFDGIAVNLRYEYG 138
H M+S+ E F+ R+ EL L ++ +EY+AELKFDG+A++LRYE G
Sbjct: 89 RHKVPMLSIRTETDTEATGAQNFDTRVRKELGLAESEPPVEYVAELKFDGLAMSLRYENG 148
Query: 139 YLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN-KY 197
L QA+TRGDG +GE++T NI I++IPL L PP ++EVR EV + + DF LN K
Sbjct: 149 ILVQAATRGDGEVGEDVTQNIRTINQIPLRLPADAPP-VMEVRGEVYMRRADFEALNEKQ 207
Query: 198 RYHL-----GLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL----RGMNMPSS 248
R + G K F NPRNAAAG +RQL+P + + L FFA+G+G++ G S
Sbjct: 208 REKIAQGAKGEKTFVNPRNAAAGGVRQLDPALAAQRRLSFFAYGLGDVTPVEEGGPAFES 267
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
H ++L + G + + + G +LI F++ + +R +LPY+IDGVVYK+N L+ QK
Sbjct: 268 HFQMLLTLKSWGFPVASQTQLAQGAPELIAFHEAMGRQRDSLPYDIDGVVYKVNSLALQK 327
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
K+GF +R PR+A+A+K+ ++E LT ++AI +Q+GRTG +TPVA L PV + G+T+T ATL
Sbjct: 328 KMGFVTREPRWAVAHKYPAQEQLTTVQAIEVQVGRTGKLTPVAKLAPVFVGGVTVTNATL 387
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYI 428
HNE E RK++++GDTV+V R+G+VIP++ S +L R D+ F +P CP+C S +
Sbjct: 388 HNEDEARRKDVRVGDTVIVRRAGDVIPEVVSVLLDKRVQDAPQFSMPRKCPVCGSDAVRE 447
Query: 429 ESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488
E RC+G C AQRK + H++ R+A+ + GLG K++E+LV+ANI+ T DLYK+
Sbjct: 448 EGEADYRCTGGLF-CGAQRKEAILHYAHRRAVEVEGLGDKLVEQLVDANIIRTLPDLYKL 506
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
L LDR++ K ANN+L A++KSK TT RF++ LGIRHVGE TAKELA +F L+
Sbjct: 507 GLTALAGLDRMAEKSANNLLEALEKSKQTTLPRFLFGLGIRHVGEATAKELARHFGKLDA 566
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------- 594
+ ATEEQLL + +G ++ F Q +R ++ QLR G+ W
Sbjct: 567 IMDATEEQLLEVSDVGPIVAQSIRTFFEQSHNREVVEQLRACGVTWEEGEPAARAPQPLS 626
Query: 595 ------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
L+ K GGKV +SK T+Y+V G++ G KL KA L + +
Sbjct: 627 GKTFVITGTLPTLSRDEAKDKVEAAGGKVAGSVSKKTDYVVAGEEAGSKLVKAQTLGVPV 686
Query: 637 LDEKNFVKIVKGFST 651
+DE + ++ G S
Sbjct: 687 IDEAALLAMLAGPSA 701
>gi|71907364|ref|YP_284951.1| NAD-dependent DNA ligase [Dechloromonas aromatica RCB]
gi|123746888|sp|Q47FA0.1|DNLJ_DECAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|71846985|gb|AAZ46481.1| NAD-dependent DNA ligase [Dechloromonas aromatica RCB]
Length = 683
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 278/670 (41%), Positives = 406/670 (60%), Gaps = 41/670 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R + EL RH+ AYY+ D P I D +YD+L EL+++E++YPELLT DS T VG V
Sbjct: 10 RAAWYRSELERHSYAYYVLDAPTIPDTEYDKLFRELQELEQQYPELLTADSPTHRVGGVP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SL+N F+ E+V F+KRI + L+ ++Y E KFDG+A++L YE
Sbjct: 70 LKEFPPRQHGVPMLSLNNAFAPEEVEAFDKRIRDGLETIAAVDYAVEPKFDGLAISLTYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G +TRGDG GE +T N+ + IPL L + P L+E+R EVL++K DF +LN
Sbjct: 130 NGVFTCGATRGDGVTGEEVTPNLRTLRCIPLRLRGEGWPALIEIRGEVLMFKADFAELNA 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ G K+F NPRNAAAG LRQL+ KI + L FFA+GVG +H E++
Sbjct: 190 RQRERGDKEFANPRNAAAGSLRQLDSKITAGRPLSFFAYGVGAGADALAVKTHGEMMGLL 249
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
G + E V+ GV L+ ++ +I +KR LPY+IDGVVYK+N L Q +LGF SRA
Sbjct: 250 AAWGFPVAEERRVVQGVRGLLGYFVEIGVKRPGLPYDIDGVVYKVNRLDWQAQLGFVSRA 309
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PRFA+A+KF ++EALT++ I++Q+GRTG ITPVA LKPV + G+T+T ATLHNE E+ R
Sbjct: 310 PRFAIAHKFPAEEALTEVLGIDVQVGRTGAITPVARLKPVFVGGVTVTNATLHNEDEVRR 369
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDS--------KIFKIPNICPICNSKIIYI 428
K++++GDTV+V R+G+VIP++ + + RP F++P CP C S ++
Sbjct: 370 KDVRLGDTVIVRRAGDVIPEVVAIVPEKRPMRDLFGSEPLNPPFELPATCPECGSAVVKG 429
Query: 429 ESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488
+ IARC+G + C AQRK L HF++R+AM+I GLG K++++LV+A +V + DLY +
Sbjct: 430 DDEAIARCTGG-LYCPAQRKQALWHFAARRAMDIEGLGDKLVDQLVDAGLVHSPADLYGL 488
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
+ L L+R+ K A N++ AI KS+ TT +RFI+ LGIR+VGE TA++LA +F L+
Sbjct: 489 TVETLAGLERMGEKSAQNLVAAIDKSRQTTLARFIFGLGIRNVGEATARDLAKHFGGLDA 548
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNN----------- 597
+ A L +P +G ++ F + +R +I LR G+ W
Sbjct: 549 LLAADSAALQMVPDVGPVVAESLAAFFAEAHNREVIDGLRRAGVSWPEGEPAQAGPQLLA 608
Query: 598 ----------PNTK-----------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
P K GGKV +SK T+Y+V G++ G KLEKA +L + +
Sbjct: 609 GKTLVLTGTLPTLKRDEAKALVEAAGGKVAGSVSKKTDYVVAGEEAGSKLEKAQELGVPV 668
Query: 637 LDEKNFVKIV 646
+DE +K++
Sbjct: 669 IDEAELMKLL 678
>gi|187477571|ref|YP_785595.1| DNA ligase [Bordetella avium 197N]
gi|123752160|sp|Q2KUU5.1|DNLJ_BORA1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|115422157|emb|CAJ48681.1| DNA ligase [Bordetella avium 197N]
Length = 695
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 279/681 (40%), Positives = 411/681 (60%), Gaps = 57/681 (8%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
+ L+ E+ +HNI YY+YD P I+D YD L+ EL +E ++PEL+T DS TQ VG
Sbjct: 11 QAARLRAEIAQHNIRYYVYDEPSITDADYDALMRELMALEAQHPELVTPDSPTQRVGAAP 70
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK------LTKNIEYIAELKFDGIA 130
V H M+SL NGF DEDV+ F+KR+++ L+ + Y ELK DG+A
Sbjct: 71 LAEFGSVRHAVPMLSLGNGFEDEDVLAFDKRVSDTLREAGLLGPAEQAHYFCELKLDGLA 130
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
++LRYE G L QA+TRGDG GE++T NI I IPL L P +LEVR EVL+ + D
Sbjct: 131 ISLRYENGELVQAATRGDGQEGEDVTANIRTIRAIPLQLRAGAP-AVLEVRGEVLMNRAD 189
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM---NMPS 247
F KLN+ + G K F NPRNAAAG LRQL+P++ + L FFA+ GE++G+ + P+
Sbjct: 190 FEKLNQKQAARGEKIFVNPRNAAAGSLRQLDPRVTAQRPLRFFAYSWGEVQGLSRDDAPA 249
Query: 248 ---------------SHSELLNWYQKIGLSICGEYS-VLSGVNKLIEFYKKINIKRFNLP 291
+H +L+W +GL + ++ G L+ FY++I +R +LP
Sbjct: 250 FDEASPGLVSTLPRDTHGGMLDWLAGLGLPVNVRFNHKAQGAEGLLAFYRRIGAERGSLP 309
Query: 292 YEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVA 351
Y+IDG+VYK++ L+ Q+ LG+ +RAPR+ALA+KF ++EA T++ I +Q+GRTG ITPVA
Sbjct: 310 YDIDGLVYKVDALAAQRVLGYVARAPRWALAHKFPAEEATTELLDIEVQVGRTGAITPVA 369
Query: 352 LLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKI 411
LKPV + G+T+T ATLHNE EI RK+++IGD V+V R+G+VIP++ +L R +
Sbjct: 370 RLKPVFVGGVTVTNATLHNEDEIRRKDVRIGDRVIVRRAGDVIPEVVGPVLEKRSGELPQ 429
Query: 412 FKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIE 471
F +P CPIC S I + IARC+G C AQRK L H + RKA++I GLG+K++E
Sbjct: 430 FVMPTHCPICGSAIERLVDEAIARCTGGLF-CPAQRKQTLLHAAGRKALDIEGLGEKLVE 488
Query: 472 KLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHV 531
+LV+ + T D++++N L LDR+ K A+N++ AI +++ + R ++ALGIRHV
Sbjct: 489 QLVDNGSLKTLADVFRLNAFELAALDRMGKKSADNLVAAIDQARRPSLGRLLFALGIRHV 548
Query: 532 GETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG 591
GETTA+++A +F N++ + A E LL +P +G + +F + +R +I +L G
Sbjct: 549 GETTARDVARHFGNIDAIMDADEAALLAVPDVGPVVAGSIHRFFQEAHNREVIRELEKQG 608
Query: 592 IY-------------------------WLNNPNTK-----GGKVVNFISKNTNYLVKGQK 621
++ W + T+ GGKV +SK T Y+V G++
Sbjct: 609 VHPQAEAQLQSGDLAGKTFVLTGTMPTWSRDEATRHILAAGGKVSGSVSKKTAYVVAGEE 668
Query: 622 PGKKLEKAIKLNIKILDEKNF 642
G KL KA +L + ILDE
Sbjct: 669 AGSKLVKARELGVTILDEDGL 689
>gi|406943532|gb|EKD75508.1| hypothetical protein ACD_44C00110G0002 [uncultured bacterium]
Length = 673
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 289/664 (43%), Positives = 408/664 (61%), Gaps = 31/664 (4%)
Query: 20 ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGEN 79
EL++++ HN Y++ D P ISD +YD L +L +E +YPE +T DS TQ +G +
Sbjct: 11 ELREKIQEHNYLYHVLDAPHISDAEYDILFKKLVALENQYPEYITADSPTQRIGATPSKE 70
Query: 80 SKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGY 139
K H M+SL+N FS++DV FNKRI +L+ K + + E K DG+A+NL Y G+
Sbjct: 71 FKESKHRIPMLSLENAFSEDDVFAFNKRIHEKLQTNKQLTFCCEPKMDGLAINLLYIDGH 130
Query: 140 LKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRY 199
QA+TRGDG +GE+IT N + IPL L K P+++EVR E+ + KK F LNK
Sbjct: 131 YTQAATRGDGIVGEDITANAKTLQTIPLKLKNKDIPKVIEVRGEIYMSKKTFHDLNKQAE 190
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKI 259
G K F NPRNAAAG +RQL+P I + L FF +G+G G + S SE+L ++
Sbjct: 191 QAGEKVFANPRNAAAGSVRQLDPGITAKRKLSFFCYGIGYYEGEAVFHSQSEILQQLKRW 250
Query: 260 GLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRF 319
G + E + + + ++F++ I KR NL YEIDGVVYK++ L QK LGF SRAPRF
Sbjct: 251 GFPVNPEITTTHSIEECLQFFETIKKKRENLAYEIDGVVYKVDDLHLQKSLGFISRAPRF 310
Query: 320 ALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNI 379
ALA+KF ++E +T I+ ++ Q+GRTG +TPVA LKPV + G+ ++ ATLHN EI RK+I
Sbjct: 311 ALAHKFPAQEQITVIEEVDFQVGRTGTLTPVARLKPVNVGGVIVSNATLHNMDEIERKDI 370
Query: 380 QIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGS 439
+I D V++ R+G+VIP++ S I RP ++K K P CP+C+S + ++ RCSG
Sbjct: 371 RIHDVVIIRRAGDVIPEVVSVIKEERPKEAKKIKAPIYCPVCHSDVTRVQGEAAVRCSGG 430
Query: 440 WIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRV 499
I C AQRK ++HF+SRKAM+I GLG K+I++LVN ++ T DLY + + L +L+R+
Sbjct: 431 LI-CSAQRKEAIKHFASRKAMDIDGLGDKIIDQLVNTKLIHTVADLYDLTHEVLAKLERL 489
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
+K A N+L AIQKSK TTF RF+YALGIR VGE+TA L +F +LE + KA+ E LL
Sbjct: 490 GDKSAQNLLEAIQKSKKTTFERFLYALGIREVGESTALMLTQHFSSLEELTKASTESLLP 549
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP----------- 598
+P +G F Q ++ +I +L GI+W L N
Sbjct: 550 LPDVGPVVSTQIHTFFQQKHNKEVIEKLLKKGIHWEKPKKLSQLPLQNKTFVLTGTLSSL 609
Query: 599 ---------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGF 649
+ G KV +S+ T+Y++ G +PG KL A KLNIKILDEK F++ +K
Sbjct: 610 SREKATQVLQSLGAKVSGSVSQKTHYVIAGSEPGSKLSNAKKLNIKILDEKQFLEFIKNV 669
Query: 650 STET 653
T T
Sbjct: 670 KTST 673
>gi|217970592|ref|YP_002355826.1| DNA ligase, NAD-dependent [Thauera sp. MZ1T]
gi|217507919|gb|ACK54930.1| DNA ligase, NAD-dependent [Thauera sp. MZ1T]
Length = 693
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 271/656 (41%), Positives = 399/656 (60%), Gaps = 44/656 (6%)
Query: 28 HNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTF 87
H+ AYY+ D P I D +YD+L EL+ IE YP L + DS TQ VG V H
Sbjct: 30 HDHAYYVLDAPTIPDAEYDRLFRELQAIERAYPALRSADSPTQRVGGKALAQFATVRHRV 89
Query: 88 KMMSLDNGFSDE--DVIIFNKRITNELKLTKN---IEYIAELKFDGIAVNLRYEYGYLKQ 142
M+S+ E F+ R+ L L ++ + Y AELKFDG+A++LRYE G L Q
Sbjct: 90 PMLSISTETDTEASGAFAFDARVRRALGLDEDDAAVAYAAELKFDGLAISLRYEDGVLVQ 149
Query: 143 ASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLG 202
A+TRGDG GE++T+N+ + IPL L + PP +LEVR E+ + + DF +LN + G
Sbjct: 150 AATRGDGETGEDVTSNVRTVKAIPLRLLGEAPP-VLEVRGEIYLRRDDFERLNARQAEAG 208
Query: 203 LKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLS 262
K F NPRNAAAG +RQL+P I + L F+A+G+GE+ G +P++ +E+L+ GL
Sbjct: 209 EKIFVNPRNAAAGSIRQLDPGIAARRPLSFYAYGLGEVAGWTLPATQTEVLDALAAFGLP 268
Query: 263 ICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALA 322
+CG + + G L F+ +I R LP++IDGVVYK++ L+ Q++LGF +R PR+A+A
Sbjct: 269 VCGHRAQVRGAEGLAAFHARIGALRDTLPFDIDGVVYKVDALALQQQLGFVTREPRWAVA 328
Query: 323 YKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIG 382
+K+ ++EA+T ++ I +Q+GRTG +TPVA L+PV + G+T+T ATLHN+ EI RK+++IG
Sbjct: 329 HKYPAQEAVTLLRDIEVQVGRTGALTPVARLEPVFVGGVTVTNATLHNQDEIDRKDVRIG 388
Query: 383 DTVVVHRSGNVIPKITSSILSLRPNDSKIF----KIPNICPICNSKIIYIESNLIARCSG 438
D V+V R+G+VIP++ + IL R + F + P CP+C S ++ E +ARC+G
Sbjct: 389 DWVIVRRAGDVIPEVVAPILERRGGELPRFVLLDRFPT-CPVCGSHVVRGEDEAVARCTG 447
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
C AQRK L HF+ R+AM+I GLG K++++LV+A IV T VDLY++ L L+R
Sbjct: 448 GLF-CPAQRKQALLHFAGRRAMDIEGLGDKLVDQLVDAAIVKTPVDLYRLGVLALANLER 506
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N+L+AI+KS+ TT +RFI+ALGIR+VGE TA++LA +F L+ + A + L
Sbjct: 507 MGEKSAQNLLMAIEKSRGTTLARFIFALGIRNVGEATARDLARHFGKLDALIAADVDALQ 566
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP-------------------- 598
+P +G K +F +P +R +I QLR G++W
Sbjct: 567 QVPDVGPIVAKCIAEFFAEPHNREVIEQLRAAGVHWAEGEPQGSVAGALAGKTFVLTGTL 626
Query: 599 ------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+GGKV +SK T+Y+V G + G KL+KA L + ILDE
Sbjct: 627 PTLSRDEAKARIEARGGKVAGSVSKKTHYVVAGAEAGSKLDKAQALGLAILDEDGL 682
>gi|89900985|ref|YP_523456.1| DNA ligase [Rhodoferax ferrireducens T118]
gi|123397178|sp|Q21WC8.1|DNLJ_RHOFD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|89345722|gb|ABD69925.1| DNA ligase, NAD-dependent [Rhodoferax ferrireducens T118]
Length = 690
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 274/674 (40%), Positives = 403/674 (59%), Gaps = 43/674 (6%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
V +L++ LH H YY+ D P I D +YD++ EL+ IE ++PEL+T DS TQ VG
Sbjct: 19 VAQLRRALHEHAHHYYVEDAPTIPDAEYDRMFQELQAIEAQHPELITPDSPTQRVGGRAL 78
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVII--FNKRITNELKLTKN---IEYIAELKFDGIAVN 132
E V H M+S+ E F+ R+ EL L + + Y+AE KFDG+A+N
Sbjct: 79 EQFASVRHAVPMLSIRTETDTEASGARNFDTRVRRELGLDEAAPAVAYVAEPKFDGLAMN 138
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
LRYE G L QA+TRGDG +GE++T N+ I +IPL L P +LEVR EV + + DF
Sbjct: 139 LRYESGILVQAATRGDGEVGEDVTQNVRTIGQIPLRLPADAP-SILEVRGEVYMRRDDFE 197
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL----RGMNMPSS 248
KLN+ + G K F NPRNAAAG +RQL+P I + L FFA+G+GE+ G +
Sbjct: 198 KLNEQQRARGQKTFVNPRNAAAGAVRQLDPAIAAQRPLSFFAYGLGEVTPEQAGGPAFGT 257
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
H ELL + G + + G +L+ +Y+ I +R LP++IDGVVYK+N L+ Q+
Sbjct: 258 HYELLQALKTWGFPVSALVGLAQGATELVAYYESIARQRDALPFDIDGVVYKVNSLALQR 317
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
++GF +R PR+A+A+KF ++E T + I++Q+GRTG +TPVA L PV + G+T+T ATL
Sbjct: 318 RMGFVTREPRWAVAHKFPAQEQFTTVLDIDVQVGRTGKLTPVAKLAPVFVGGVTVTNATL 377
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYI 428
HNE E RK++++GDTV+V R+G+VIP++ S +L R + F +P CP+C S +
Sbjct: 378 HNEDEARRKDVRVGDTVIVRRAGDVIPEVVSVLLDKRQPGATEFTMPRQCPVCGSAAVRE 437
Query: 429 ESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488
E + RC+G C AQRK + HF+ R+A+ + GLG+K++++LV+ +++ DLY++
Sbjct: 438 EGEVDYRCTGGLF-CSAQRKQAILHFAQRRAVEVEGLGEKLVDQLVDGHVIRILPDLYRL 496
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
L LDR+++K A NIL A++KSK TT RF++ LGIRHVGE TAKELA +F +L+
Sbjct: 497 GLTALASLDRMADKSAQNILQALEKSKQTTLPRFLFGLGIRHVGEATAKELARHFGSLDA 556
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP---------- 598
+ A+ EQLL + IG ++ F +QP +R ++ QLR G+ W P
Sbjct: 557 VMDASLEQLLQVNDIGPIVAQSLRTFFDQPHNREVVEQLRACGVTWQEGPPAPVTPTPLS 616
Query: 599 ----------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
GGKV +SK T ++V G + G KL KA +L + +
Sbjct: 617 GKTFVITGTLPSMSRDEAKDLIEAAGGKVAGSVSKKTTFVVAGTEAGSKLTKAQELGVAV 676
Query: 637 LDEKNFVKIVKGFS 650
LDE +++ G S
Sbjct: 677 LDEAGLKELLDGHS 690
>gi|374622464|ref|ZP_09694988.1| DNA ligase (NAD(+)) [Ectothiorhodospira sp. PHS-1]
gi|373941589|gb|EHQ52134.1| DNA ligase (NAD(+)) [Ectothiorhodospira sp. PHS-1]
Length = 678
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 269/666 (40%), Positives = 393/666 (59%), Gaps = 35/666 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L+ + RH+ YY+ D+P I D YD LL EL+ +E YP L+T DS TQ VG
Sbjct: 12 RAQALRALIARHDHRYYVLDDPEIPDAAYDALLRELRDLEAGYPALVTPDSPTQRVGGTR 71
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN--IEYIAELKFDGIAVNLR 134
E H M+SLDN F + DV+ F++R+ L+ + +EY E K DG+AV+L
Sbjct: 72 LEAFPEAVHLLPMLSLDNAFEEADVLAFDRRVRERLEWDDDTPVEYAVEPKLDGLAVSLI 131
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194
YE G L + +TRGDG GE++T NI + IPL L P LEVR EV + K F L
Sbjct: 132 YEDGLLVRGATRGDGTTGEDVTVNIRTLRAIPLRLRGSGHPRRLEVRGEVYMEKARFEAL 191
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N G K F NPRNAAAG LRQL+P+I + L FFA+GVG + G MP +H + L+
Sbjct: 192 NAQARERGEKVFVNPRNAAAGSLRQLDPEITARRPLSFFAYGVGHVEGAEMPDNHGDTLD 251
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
GL +C E V++G + +Y++I R LPYEIDGVVYK+N Q+ LGF S
Sbjct: 252 RLADWGLRVCPERDVVAGGEGCLAYYRRIGELRDTLPYEIDGVVYKVNRFYLQRALGFVS 311
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+A+K+ ++E +T ++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI
Sbjct: 312 RAPRWAIAHKYPAQEQMTWLREVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNMDEI 371
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
RK++ IGD V+V R+G+VIP++ + + + RP D++ +P CP+C S I E ++
Sbjct: 372 RRKDVHIGDRVIVRRAGDVIPEVVAVVAADRPMDARPIVMPEQCPVCGSTIERPEGEAVS 431
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RCSG + C AQR+ ++HF+SR+AM+I GLG+++IE+LV +V DLY++ L
Sbjct: 432 RCSGG-LYCAAQRREAIRHFASRRAMDIEGLGERLIEQLVERGLVEHVDDLYRLQTPALA 490
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
L+R+ K A N++ A+++S+ T RFI+ALGIR VGE+TA+ LA +F L+ + +A E
Sbjct: 491 ALERMGEKSAANLVQALERSRHTRLDRFIFALGIREVGESTARALAAHFGGLDALMQADE 550
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------- 594
L+ +P +G F QP +R +I QLR+ G++W
Sbjct: 551 AALMVVPDVGPKVAAHVATFFRQPHNREVIRQLREAGVHWEEQAPRNADDLPLAGRTYVL 610
Query: 595 ------------LNNPNTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ G +V +S+ T ++ G+ G KLEKA L + +LDE
Sbjct: 611 TGTLSSLTREEAADRLRALGARVSGSVSRKTTAVIAGEAAGSKLEKARGLGVDVLDEAGL 670
Query: 643 VKIVKG 648
+ +++G
Sbjct: 671 MALLEG 676
>gi|119898292|ref|YP_933505.1| DNA ligase [Azoarcus sp. BH72]
gi|166215393|sp|A1K713.1|DNLJ_AZOSB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|119670705|emb|CAL94618.1| DNA ligase (NAD+) [Azoarcus sp. BH72]
Length = 693
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 279/665 (41%), Positives = 407/665 (61%), Gaps = 44/665 (6%)
Query: 24 ELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYV 83
E+ RHN AYY+ D P I D +YD+L EL+ IE +PELLT DS TQ VG V
Sbjct: 17 EIARHNHAYYVLDTPTIPDAEYDRLFRELQDIEAAHPELLTPDSPTQRVGGAPLPELVPV 76
Query: 84 HHTFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAVNLRYEYG 138
H M+S+ + + + V F+ R+ N L L +EY++ELKFDG+A++LRYE+G
Sbjct: 77 RHAVPMLSIRTETDTTAQGVRNFDTRVRNALGLGDGDPAVEYLSELKFDGLAISLRYEHG 136
Query: 139 YLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYR 198
L +A+TRGDG GE++T N+ I +IPL L+ P ++EVR E+ + + DF LN +
Sbjct: 137 VLVRAATRGDGETGEDVTHNVRTIQQIPLRLH-GAAPAVIEVRGEIYMRRDDFEALNNRQ 195
Query: 199 YHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQK 258
G K F NPRNAAAG +RQL+P+I + L FFA+G+GE G ++P++ +ELL
Sbjct: 196 REAGDKVFVNPRNAAAGAVRQLDPRIAARRPLSFFAYGLGEHAGFDLPATQAELLTRLAA 255
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
G+ +C V SG LI F+ +I R LPY+IDGVVYK+N + Q++LGF +R PR
Sbjct: 256 FGVPVCEHREVSSGPEGLIAFHDRIAALRNELPYDIDGVVYKVNRVDLQRELGFVTREPR 315
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+A+K+ ++E +T++ I++Q+GRTG +TPVA L+PV + G+T+T ATLHN+ EI RK+
Sbjct: 316 WAVAHKYPAQEEITRLAGIDVQVGRTGALTPVARLEPVFVGGVTVTNATLHNQDEIDRKD 375
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKI----PNICPICNSKIIYIESNLIA 434
+++GD V+V R+G+VIP++ +L R + F + P CP+C S ++ E +A
Sbjct: 376 VRVGDWVIVRRAGDVIPEVVGPVLERRVGEPPRFNLLASYPT-CPVCGSHVVRGEDEAVA 434
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RCSG C AQRK L HF+ R+AM+I GLG K++E+LV+A+IV T DLYK+ L
Sbjct: 435 RCSGGLF-CPAQRKQALLHFAGRRAMDIEGLGDKLVEQLVDASIVKTPADLYKLGILALA 493
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
L+R+ K A N+L AI+KS+ TT +RFI+ALGIR+VGE TAK+LA +F +L+ + A E
Sbjct: 494 NLERMGEKSAQNLLAAIEKSRNTTLARFIFALGIRNVGEATAKDLARHFGSLDALLAADE 553
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------- 594
L +P +G K +F + + ++ QLR G+ W
Sbjct: 554 GALQQVPDVGPVVAKCIAEFFAEAHNVEVVEQLRAAGLRWEEGAPAAPASGSVAGLTFVI 613
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ K GGKV +SK T+YLV G + G KL KA L + I+DE
Sbjct: 614 TGTLPTLSRDEAKALIEAHGGKVSGSVSKKTDYLVAGAEAGSKLAKAQDLGVDIVDEDGL 673
Query: 643 VKIVK 647
++++
Sbjct: 674 RRLLE 678
>gi|260219439|emb|CBA26284.1| DNA ligase [Curvibacter putative symbiont of Hydra magnipapillata]
Length = 696
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 277/678 (40%), Positives = 410/678 (60%), Gaps = 49/678 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ L++ELHR AYY+ D P++ D +YD+L EL+ +E ++PE +T DS TQ VG
Sbjct: 21 RLQALREELHRLGHAYYVLDAPLVPDVEYDRLFRELQDLEAQHPEWVTPDSPTQRVGGQV 80
Query: 77 GENSKYVHHTFKMMSLDNGFSDED--VIIFNKRITNELKLTKN---IEYIAELKFDGIAV 131
+ V H M+S+ E + F+ R+ EL+L + +EY+AELKFDG+A+
Sbjct: 81 LDAFTSVRHAVPMLSIRTETDTESTGALAFDTRVRKELELNEGDAPVEYVAELKFDGLAM 140
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
NLRYE G L QA+TRGDG GE++T NI I +IPL L PP +LEVR EV + + DF
Sbjct: 141 NLRYEQGVLVQAATRGDGEYGEDVTQNIRTIGQIPLRLPDGVPP-VLEVRGEVYMRRDDF 199
Query: 192 IKLN-KYRYHL-----GLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL----R 241
LN + R + G K F NPRNAAAG +RQL+P I + L FFA+G+GE+
Sbjct: 200 EALNERQRARIAAGEKGEKTFVNPRNAAAGAVRQLDPGIAAQRPLSFFAYGLGEVTPAAE 259
Query: 242 GMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKI 301
G SH +L + G + + G +LI ++++I R +LP++IDGVVYK+
Sbjct: 260 GGPDFGSHYAMLQTLKSWGFPVAAQVDTARGAPELIAYHQRIGAGRDSLPFDIDGVVYKV 319
Query: 302 NCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGI 361
N L+ Q++LGF +R PR+A+A+K+ ++E LT + AI++Q+GRTG +TPVA L PV + G+
Sbjct: 320 NSLALQQRLGFVTREPRWAVAHKYPAQEQLTTVLAIDVQVGRTGKLTPVAKLAPVFVGGV 379
Query: 362 TITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPIC 421
T+T ATLHNE E RK++++GDTV+V R+G+VIP++ S + R D+ F +P ICP+C
Sbjct: 380 TVTNATLHNEDEARRKDVRVGDTVIVRRAGDVIPEVVSVLPEKREGDAPQFTMPRICPVC 439
Query: 422 NSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVT 481
S + E RC+G C AQRK + HF+ R+A+ + GLG K++E+LV+AN++
Sbjct: 440 QSAAVREEGEADYRCTGGLF-CSAQRKQAILHFAQRRAVEVEGLGDKLVEQLVDANVIRN 498
Query: 482 AVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELAN 541
DLY++ L LDR+++K A NI+ A++KSK TT RF++ LGIRHVGE TAKELA
Sbjct: 499 LPDLYRLGLSALASLDRMADKSAQNIVDALEKSKQTTLPRFLFGLGIRHVGEATAKELAR 558
Query: 542 YFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP--- 598
+F L+ + +A EE LL + +G ++ F +Q +R ++ QLR G+ W
Sbjct: 559 HFGTLDAIMEADEEALLAVSDVGPIVAQSIRTFFDQAHNREVVEQLRACGVTWPEGAPAD 618
Query: 599 -----------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
GGKV +SK T+++V G + G KL+KA
Sbjct: 619 AGPKPLAGKTLVLTGTLPTLGRDAAKDLIEAAGGKVSGSVSKKTHFVVAGAEAGSKLDKA 678
Query: 630 IKLNIKILDEKNFVKIVK 647
+L + +LDE ++++K
Sbjct: 679 NELGVPVLDEAGLLELLK 696
>gi|212212963|ref|YP_002303899.1| NAD-dependent DNA ligase [Coxiella burnetii CbuG_Q212]
gi|254781302|sp|B6J1C6.1|DNLJ_COXB2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|212011373|gb|ACJ18754.1| NAD-dependent DNA ligase [Coxiella burnetii CbuG_Q212]
Length = 677
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 272/666 (40%), Positives = 416/666 (62%), Gaps = 31/666 (4%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+K+ R+ L++E++ HN YY+ P I D+ YD+L EL+K+E+KYPE +T S TQ
Sbjct: 8 AKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETITPSSPTQR 67
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + + VHH M+SLDN F ++ + F+KRI LKL K EY+ E K DG+A+
Sbjct: 68 VGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRLKLDKPFEYVCEPKMDGVAL 127
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L +A+TRGDG GEN+T N I +PL L PEL+E+R EVL+ ++ F
Sbjct: 128 SLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPREGF 187
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
K N+ G K F NPRNAA+G LRQL+P+I + L F+ + +G L+G + P +H +
Sbjct: 188 AKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDFPKNHCD 247
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
+L W++ G+ + E V+ G+ +++Y+ + R +P++IDG+V K+N L Q +LG
Sbjct: 248 VLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQAELG 307
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F SRAPR+A+AYKF ++E +T +KAI Q+GRTG +TPVA L+PV + G+T++ ATLHN
Sbjct: 308 FVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSNATLHNF 367
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
E+YRK++++GDTV+V R+G+VIP++ IL+ RP +K+ KIP+ CP+C++++I E
Sbjct: 368 DELYRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPSRCPVCHAEVIKPEGE 427
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC G + C AQ + ++HF+SR+A++I GLG K++E + ++ +Y++
Sbjct: 428 AVARCVGG-LYCRAQLRESIKHFASRRALDIEGLGDKLVELFIQEKLIKDITGIYQLKKS 486
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L R+ K A N+L AI+KSK TT RF+YALGIR VG+TTA+ LA +F L+ + K
Sbjct: 487 AITALPRMGEKSAENLLTAIEKSKKTTLPRFLYALGIRGVGDTTARTLARHFHELDLLMK 546
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP------------- 598
A+ E L I IG + F +Q + LI++L +G++W
Sbjct: 547 ASIETLQEIRDIGPVAAENIHAFFHQKHNAELINKLIHLGVHWPQEKAVVKSEIAGKTFV 606
Query: 599 -----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
GGK + +SKNT+Y++ G+ PG K EKA L I ++DE+
Sbjct: 607 LTGALKSLTREEAEEKIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEA 666
Query: 642 FVKIVK 647
F+K++K
Sbjct: 667 FLKLLK 672
>gi|161831535|ref|YP_001596473.1| NAD-dependent DNA ligase [Coxiella burnetii RSA 331]
gi|190359249|sp|A9NC33.1|DNLJ_COXBR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|161763402|gb|ABX79044.1| DNA ligase, NAD-dependent [Coxiella burnetii RSA 331]
Length = 670
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 273/666 (40%), Positives = 415/666 (62%), Gaps = 31/666 (4%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+K+ R+ L+ E++ HN YY+ P I D+ YD+L EL+K+E+KYPE +T S TQ
Sbjct: 5 AKIQKRIERLRHEINDHNYRYYVLSQPTIPDSVYDELFHELEKLEKKYPETITPSSPTQR 64
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + + VHH M+SLDN F ++ + F+KRI LKL K EY+ E K DG+A+
Sbjct: 65 VGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRLKLDKPFEYVCEPKMDGVAL 124
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L +A+TRGDG GEN+T N I +PL L PEL+E+R EVL+ ++ F
Sbjct: 125 SLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPREGF 184
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
K N+ G K F NPRNAA+G LRQL+P+I + L F+ + +G L+G + P +H +
Sbjct: 185 AKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDFPKNHCD 244
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
+L W++ G+ + E V+ G+ +++Y+ + R +P++IDG+V K+N L Q +LG
Sbjct: 245 VLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQAELG 304
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F SRAPR+A+AYKF ++E +T +KAI Q+GRTG +TPVA L+PV + G+T++ ATLHN
Sbjct: 305 FVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSNATLHNF 364
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
E+YRK++++GDTV+V R+G+VIP++ IL+ RP +K+ KIP+ CP+C++++I E
Sbjct: 365 DELYRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPSRCPVCHAEVIKPEGE 424
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC G + C AQ + ++HFSSR+A++I GLG K++E + ++ +Y++
Sbjct: 425 AVARCVGG-LYCRAQLRESIKHFSSRRALDIEGLGDKLVELFIQEKLIKDITGIYQLKKS 483
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L R+ K A N+L AI+KSK TT RF+YALGIR VG+TTA+ LA +F L+ + K
Sbjct: 484 AITALPRMGEKSAENLLTAIEKSKKTTLPRFLYALGIRGVGDTTARTLARHFHELDLLMK 543
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP------------- 598
A+ E L I IG + F +Q + LI++L +G++W
Sbjct: 544 ASIETLQEIRDIGPVAAENIHAFFHQKNNAELINKLIHLGVHWPQEKAVVKSEIAGKTFV 603
Query: 599 -----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
GGK + +SKNT+Y++ G+ PG K EKA L I ++DE+
Sbjct: 604 LTGALKSLTREEAEEKIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEA 663
Query: 642 FVKIVK 647
F+K++K
Sbjct: 664 FLKLLK 669
>gi|165923886|ref|ZP_02219718.1| DNA ligase, NAD-dependent [Coxiella burnetii Q321]
gi|165916671|gb|EDR35275.1| DNA ligase, NAD-dependent [Coxiella burnetii Q321]
Length = 670
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 272/666 (40%), Positives = 416/666 (62%), Gaps = 31/666 (4%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+K+ R+ L++E++ HN YY+ P I D+ YD+L EL+K+E+KYPE +T S TQ
Sbjct: 5 AKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETITPSSPTQR 64
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + + VHH M+SLDN F ++ + F+KRI LKL K EY+ E K DG+A+
Sbjct: 65 VGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRLKLDKPFEYVCEPKMDGVAL 124
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L +A+TRGDG GEN+T N I +PL L PEL+E+R EVL+ ++ F
Sbjct: 125 SLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPREGF 184
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
K N+ G K F NPRNAA+G LRQL+P+I + L F+ + +G L+G + P +H +
Sbjct: 185 AKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDFPKNHCD 244
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
+L W++ G+ + E V+ G+ +++Y+ + R +P++IDG+V K+N L Q +LG
Sbjct: 245 VLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQAELG 304
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F SRAPR+A+AYKF ++E +T +KAI Q+GRTG +TPVA L+PV + G+T++ ATLHN
Sbjct: 305 FVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSNATLHNF 364
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
E+YRK++++GDTV+V R+G+VIP++ IL+ RP +K+ KIP+ CP+C++++I E
Sbjct: 365 DELYRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPSRCPVCHAEVIKPEGE 424
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC G + C AQ + ++HF+SR+A++I GLG K++E + ++ +Y++
Sbjct: 425 AVARCMGG-LYCRAQLRESIKHFASRRALDIEGLGDKLVELFIQEKLIKDITGIYQLKKS 483
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L R+ K A N+L AI+KSK TT RF+YALGIR VG+TTA+ LA +F L+ + K
Sbjct: 484 AITALPRMGEKSAENLLTAIEKSKKTTLPRFLYALGIRGVGDTTARTLARHFHELDLLMK 543
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP------------- 598
A+ E L I IG + F +Q + LI++L +G++W
Sbjct: 544 ASIETLQEIRDIGPVVAENIHAFFHQKHNAELINKLIHLGVHWPQEKAVVKSEIAGKTFV 603
Query: 599 -----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
GGK + +SKNT+Y++ G+ PG K EKA L I ++DE+
Sbjct: 604 LTGALKSLTREEAEEKIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEA 663
Query: 642 FVKIVK 647
F+K++K
Sbjct: 664 FLKLLK 669
>gi|153207803|ref|ZP_01946403.1| DNA ligase, NAD-dependent [Coxiella burnetii 'MSU Goat Q177']
gi|120576355|gb|EAX32979.1| DNA ligase, NAD-dependent [Coxiella burnetii 'MSU Goat Q177']
Length = 670
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 272/666 (40%), Positives = 416/666 (62%), Gaps = 31/666 (4%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+K+ R+ L++E++ HN YY+ P I D+ YD+L EL+K+E+KYPE +T S TQ
Sbjct: 5 AKIQKRIERLREEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETITPSSPTQR 64
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + + VHH M+SLDN F ++ + F+KRI LKL K EY+ E K DG+A+
Sbjct: 65 VGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRLKLDKPFEYVCEPKMDGVAL 124
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L +A+TRGDG GEN+T N I +PL L PEL+E+R EVL+ ++ F
Sbjct: 125 SLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPREGF 184
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
K N+ G K F NPRNAA+G LRQL+P+I + L F+ + +G L+G + P +H +
Sbjct: 185 AKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDFPKNHCD 244
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
+L W++ G+ + E V+ G+ +++Y+ + R +P++IDG+V K+N L Q +LG
Sbjct: 245 VLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQAELG 304
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F SRAPR+A+AYKF ++E +T +KAI Q+GRTG +TPVA L+PV + G+T++ ATLHN
Sbjct: 305 FVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSNATLHNF 364
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
E+YRK++++GDTV+V R+G+VIP++ IL+ RP +K+ KIP+ CP+C++++I E
Sbjct: 365 DELYRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPSRCPVCHAEVIKPEGE 424
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC G + C AQ + ++HF+SR+A++I GLG K++E + ++ +Y++
Sbjct: 425 AVARCMGG-LYCRAQLRESIKHFASRRALDIEGLGDKLVELFIQEKLIKDITGIYQLKKS 483
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L R+ K A N+L AI+KSK TT RF+YALGIR VG+TTA+ LA +F L+ + K
Sbjct: 484 AITALPRMGEKSAENLLTAIEKSKKTTLPRFLYALGIRGVGDTTARTLARHFHELDLLMK 543
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP------------- 598
A+ E L I IG + F +Q + LI++L +G++W
Sbjct: 544 ASIETLQEIRDIGPVVAENIHAFFHQKHNAELINKLIHLGVHWPQEKAVVKSEIAGKTFV 603
Query: 599 -----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
GGK + +SKNT+Y++ G+ PG K EKA L I ++DE+
Sbjct: 604 LTGALKSLTREEAEEKIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEA 663
Query: 642 FVKIVK 647
F+K++K
Sbjct: 664 FLKLLK 669
>gi|215918993|ref|NP_819574.2| NAD-dependent DNA ligase [Coxiella burnetii RSA 493]
gi|218512010|sp|Q83DZ6.2|DNLJ_COXBU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|206583878|gb|AAO90088.2| NAD-dependent DNA ligase [Coxiella burnetii RSA 493]
Length = 673
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 274/669 (40%), Positives = 418/669 (62%), Gaps = 37/669 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+K+ R+ L++E++ HN YY+ P I D+ YD+L EL+K+E+KYPE +T S TQ
Sbjct: 8 AKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELEKLEKKYPETITPSSPTQR 67
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + + VHH M+SLDN F ++ + F+KRI LKL K EY+ E K DG+A+
Sbjct: 68 VGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRLKLDKPFEYVCEPKMDGVAL 127
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L +A+TRGDG GEN+T N I +PL L PEL+E+R EVL+ ++ F
Sbjct: 128 SLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPREGF 187
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
K N+ G K F NPRNAA+G LRQL+P+I + L F+ + +G L+G + P +H +
Sbjct: 188 AKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDFPKNHCD 247
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
+L W++ G+ + E V+ G+ +++Y+ + R +P++IDG+V K+N L Q +LG
Sbjct: 248 VLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQAELG 307
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F SRAPR+A+AYKF ++E +T +KAI Q+GRTG +TPVA L+PV + G+T++ ATLHN
Sbjct: 308 FVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSNATLHNF 367
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
E+YRK++++GDTV+V R+G+VIP++ IL+ RP +K+ KIP+ CP+C++++I E
Sbjct: 368 DELYRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPSRCPVCHAEVIKPEGE 427
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC G + C AQ + ++HF+SR+A++I GLG K++E + ++ +Y++
Sbjct: 428 AVARCVGG-LYCRAQLRESIKHFASRRALDIEGLGDKLVELFIQEKLIKDITGIYQLKKS 486
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L R+ K A N+L AI+KSK TT RF+YALGIR VG+TTA+ LA +F L+ + K
Sbjct: 487 AITALPRMGEKSAENLLTAIEKSKKTTLPRFLYALGIRGVGDTTARTLARHFHELDLLMK 546
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK---------- 601
A+ E L I IG + F +Q + LI++L +G++W P K
Sbjct: 547 ASIETLQEIRDIGPVAAENIHAFFHQKNNAELINKLIHLGVHW---PQEKAVVKSEIAGK 603
Query: 602 -----------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
GGK + +SKNT+Y++ G+ PG K EKA L I ++D
Sbjct: 604 TFVLTGALKSLTREEAEEKIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLID 663
Query: 639 EKNFVKIVK 647
E+ F+K++K
Sbjct: 664 EEAFLKLLK 672
>gi|334130488|ref|ZP_08504285.1| DNA ligase Polydeoxyribonucleotide synthase NAD+ [Methyloversatilis
universalis FAM5]
gi|333444597|gb|EGK72546.1| DNA ligase Polydeoxyribonucleotide synthase NAD+ [Methyloversatilis
universalis FAM5]
Length = 689
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 271/678 (39%), Positives = 404/678 (59%), Gaps = 49/678 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R EL+ ++ H+ YY D P I D +YD+L EL+ +E +PEL T DS T+ VG
Sbjct: 8 RAEELRAQIAHHDRLYYELDAPEIPDAEYDRLFRELQALEAGHPELATPDSPTRRVGGKP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDE--DVIIFNKRITNELKLTKN---IEYIAELKFDGIAV 131
++ V H M+S+ E + F+ R EL L ++ +EY AELKFDG+A+
Sbjct: 68 LDSFAPVRHVVAMLSIRTETDTEASGALNFDARARRELGLAEDAPPVEYAAELKFDGLAI 127
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLN----------IKYP--PELLE 179
NLRYE G L QA+TRGDG GE++T N+ I +PL L P PE+LE
Sbjct: 128 NLRYEQGVLVQAATRGDGETGEDVTQNVRTIRDVPLRLTAPPVSGQPSLFDTPGLPEVLE 187
Query: 180 VRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGE 239
VR EV + + DF N G K NPRN AAG +RQL+P I + L F+A+G+GE
Sbjct: 188 VRGEVYMRRDDFDAYNARAIAAGEKTLVNPRNGAAGSIRQLDPAIAAKRPLSFYAYGLGE 247
Query: 240 LRGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVY 299
+RG ++P++H+ +L+ GL + +V +G L F+ +I R LP++IDGVVY
Sbjct: 248 VRGWDLPATHAGVLDALAAFGLPVSEHRAVCAGGEALAAFHARIAEARPTLPFDIDGVVY 307
Query: 300 KINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLID 359
K+N L+ Q K+GF +R PR+A+A+K+ ++EALT ++ I +Q+GRTG +TPVA L PV +
Sbjct: 308 KVNSLALQAKMGFVTREPRWAVAHKYPAQEALTTVQDIEVQVGRTGKLTPVARLAPVFVG 367
Query: 360 GITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICP 419
G+T+T ATLHNESEI RK++ +GDTVV+ R+G+VIP++ S + RP D++ F +P+ CP
Sbjct: 368 GVTVTNATLHNESEIRRKDVHVGDTVVIRRAGDVIPEVVSVLSDRRPVDARAFSMPSHCP 427
Query: 420 ICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIV 479
+C S ++ E + RC+G + C AQRK + HF+ R+AM++ GLG +++E+LV+ ++
Sbjct: 428 VCGSDVVREEGEVDHRCTGG-LYCSAQRKQAVLHFAQRRAMDVEGLGDRLVEQLVDGGLI 486
Query: 480 VTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKEL 539
T DLY++ L LDR++ K A N++ +++KSK TT RF++ALGIRHVGE TAK+L
Sbjct: 487 RTLPDLYRLGVLKLAELDRMAEKSAENLVASLEKSKRTTLGRFLFALGIRHVGEATAKDL 546
Query: 540 ANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----- 594
A + +++ + A+ E+L +P +G + F QP +R ++ QLR GI W
Sbjct: 547 ARHLGSMDRIMDASVEELSQVPDVGPVVAASIHTFFAQPHNREVVEQLRACGIVWEEGEA 606
Query: 595 --LNNP------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEK 628
+ P G KV +SK T+++V G G KL K
Sbjct: 607 QVASGPLVGRTVVLTGTLPTLSRDQAKDLLEAAGAKVAGSVSKKTDFVVAGTDAGSKLTK 666
Query: 629 AIKLNIKILDEKNFVKIV 646
A +L I ILDE + ++
Sbjct: 667 AQELGINILDESGLLSLL 684
>gi|212218835|ref|YP_002305622.1| NAD-dependent DNA ligase [Coxiella burnetii CbuK_Q154]
gi|254781301|sp|B6J878.1|DNLJ_COXB1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|212013097|gb|ACJ20477.1| NAD-dependent DNA ligase [Coxiella burnetii CbuK_Q154]
Length = 673
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 274/669 (40%), Positives = 418/669 (62%), Gaps = 37/669 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+K+ R+ L++E++ HN YY+ P I D+ YD+L EL+K+E+KYPE +T S TQ
Sbjct: 8 AKIQKRIERLREEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETITPSSPTQR 67
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + + VHH M+SLDN F ++ + F+KRI LKL K EY+ E K DG+A+
Sbjct: 68 VGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRLKLDKPFEYVCEPKMDGVAL 127
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L +A+TRGDG GEN+T N I +PL L PEL+E+R EVL+ ++ F
Sbjct: 128 SLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPREGF 187
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
K N+ G K F NPRNAA+G LRQL+P+I + L F+ + +G L+G + P +H +
Sbjct: 188 AKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDFPKNHCD 247
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
+L W++ G+ + E V+ G+ +++Y+ + R +P++IDG+V K+N L Q +LG
Sbjct: 248 VLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQAELG 307
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F SRAPR+A+AYKF ++E +T +KAI Q+GRTG +TPVA L+PV + G+T++ ATLHN
Sbjct: 308 FVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSNATLHNF 367
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
E+YRK++++GDTV+V R+G+VIP++ IL+ RP +K+ KIP+ CP+C++++I E
Sbjct: 368 DELYRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPSRCPVCHAEVIKPEGE 427
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC G + C AQ + ++HF+SR+A++I GLG K++E + ++ +Y++
Sbjct: 428 AVARCMGG-LYCRAQLRESIKHFASRRALDIEGLGDKLVELFIQEKLIKDITGIYQLKKS 486
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L R+ K A N+L AI+KSK TT RF+YALGIR VG+TTA+ LA +F L+ + K
Sbjct: 487 AITALPRMGEKSAENLLTAIEKSKKTTLPRFLYALGIRGVGDTTARTLARHFHELDLLMK 546
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK---------- 601
A+ E L I IG + F +Q + LI++L +G++W P K
Sbjct: 547 ASIETLQEIRDIGPVVAENIHAFFHQKHNAELINKLIHLGVHW---PQEKAVVKSEIAGK 603
Query: 602 -----------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
GGK + +SKNT+Y++ G+ PG K EKA L I ++D
Sbjct: 604 TFVLTGALKSLTREEAEEKIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLID 663
Query: 639 EKNFVKIVK 647
E+ F+K++K
Sbjct: 664 EEAFLKLLK 672
>gi|297538570|ref|YP_003674339.1| DNA ligase, NAD-dependent [Methylotenera versatilis 301]
gi|297257917|gb|ADI29762.1| DNA ligase, NAD-dependent [Methylotenera versatilis 301]
Length = 682
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 276/668 (41%), Positives = 410/668 (61%), Gaps = 40/668 (5%)
Query: 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG 73
L+ R +L++ + +++ YY+ D P + D++YD + +L+ IE ++P L+T DS TQ V
Sbjct: 19 LALRCQQLRQLIAQYDHEYYVLDAPSVPDSEYDLVYRDLQDIERQHPNLITPDSPTQRVS 78
Query: 74 LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNL 133
+ H M+SL+N F D ++ F+KR+ L + +EY E KFDG+A+ L
Sbjct: 79 GSAANAFNSITHRQAMLSLNNAFEDSELEAFDKRVREALG-QEQVEYAVEPKFDGLAITL 137
Query: 134 RYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIK 193
YE G Q +TRGDG GE++T N+ + IP+ LN + P+LLEVR EVL++K+DF K
Sbjct: 138 TYENGIFTQGATRGDGYTGEDVTHNLRTVRSIPMRLNCENAPKLLEVRGEVLMFKRDFEK 197
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253
LN+ + G K F NPRNAAAG LRQL+ KI + L FFA+G+G G SHS +
Sbjct: 198 LNQAQLAKGEKLFANPRNAAAGSLRQLDAKITATRPLSFFAYGLGVADGAPALGSHSMAM 257
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
++ + + ++ GV L ++Y+KI R LP++IDGVVYK+N + Q +LGF
Sbjct: 258 DYLANLYFPVSEVRQLVMGVTGLRDYYQKIGQLRNELPFDIDGVVYKVNQFNQQNELGFV 317
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
SRAPR+A+A+KF ++EALT ++ IN+Q+GRTG ITPVA L PV + G+T+T ATLHNE E
Sbjct: 318 SRAPRWAIAHKFPAQEALTVVEDINVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDE 377
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
+ RK++ IGDTV V R+G+VIP++ S +L R D++ F++P CP C S I+ +
Sbjct: 378 VRRKDVHIGDTVSVRRAGDVIPEVVSVVLERRLADARRFEMPTACPECGSHILKQADEAV 437
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
ARC+G C AQRK + HF+SR+AM+I GLG+K++++LV AN+V T D+Y++N + L
Sbjct: 438 ARCTGGLF-CPAQRKQAITHFASRRAMDIEGLGEKLVDQLVEANLVHTLADIYQLNLETL 496
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
LDR++ K A NIL A+ SK+TT +RFIYALG+R+VGE TAK+LA +F NL + +A
Sbjct: 497 SNLDRMATKSAQNILDALDHSKITTLARFIYALGMRNVGEATAKDLAKHFGNLSALMQAD 556
Query: 554 EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK------------ 601
LL + +G ++ F+ + ++ +I L+ GI W P T+
Sbjct: 557 AASLLTVNDVGPVVAESISNFLGEQHNQDVIRALQHAGISW---PETEGKQLATGHLLGK 613
Query: 602 -----------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
GGKV +SK T+++V G G KL+KA +L + ILD
Sbjct: 614 SFVLTGTLPTLSRDAAKEMIEAVGGKVSGSVSKKTDFVVAGSDAGSKLDKAQELGLVILD 673
Query: 639 EKNFVKIV 646
E + ++
Sbjct: 674 EAGLLALL 681
>gi|190359248|sp|A9KCS0.1|DNLJ_COXBN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
Length = 670
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 271/666 (40%), Positives = 416/666 (62%), Gaps = 31/666 (4%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+K+ R+ L++E++ HN YY+ P I D+ YD+L EL+K+E+KYPE +T S TQ
Sbjct: 5 AKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETITPSSPTQR 64
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + + VHH M+SLDN F ++ + F+KRI LKL K EY+ E K DG+A+
Sbjct: 65 VGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRLKLDKPFEYVCEPKMDGVAL 124
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L +A+TRGDG GEN+T N I +PL L PEL+E+R EVL+ ++ F
Sbjct: 125 SLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPREGF 184
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
K N+ G K F NPRNAA+G LRQL+P+I + L F+ + +G L+G + P +H +
Sbjct: 185 AKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDFPKNHCD 244
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
+L W++ G+ + E V+ G+ +++Y+ + R +P++IDG+V K+N L Q +LG
Sbjct: 245 VLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQAELG 304
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F SRAPR+A+AYKF ++E +T +KAI Q+GRTG++TPVA L+PV + G+T++ ATLHN
Sbjct: 305 FVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGVVTPVARLEPVSVSGVTVSNATLHNF 364
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
E+YRK++++GDTV+V R+G+VIP++ IL+ RP +K+ KIP+ CP+C++++I E
Sbjct: 365 DELYRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPSRCPVCHAEVIKPEGE 424
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC G + C AQ + ++HF+SR+A++I GLG K++E + ++ +Y++
Sbjct: 425 AVARCVGG-LYCRAQLRESIKHFASRRALDIEGLGDKLVELFIQEKLIKDITGIYQLKKS 483
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L R+ K A N+L AI+KSK TT RF+YALGIR VG+T A+ LA +F L+ + K
Sbjct: 484 AITALPRMGEKSAENLLTAIEKSKKTTLPRFLYALGIRGVGDTIARTLARHFHELDLLMK 543
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP------------- 598
A+ E L I IG + F +Q + LI++L +G++W
Sbjct: 544 ASIETLQEIRDIGPVVAENIHAFFHQKHNAELINKLIHLGVHWPQEKAVVKSEIAGKTFV 603
Query: 599 -----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
GGK + +SKNT+Y++ G+ PG K EKA L I ++DE+
Sbjct: 604 LTGALKSLTREEAEEKIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEA 663
Query: 642 FVKIVK 647
F+K++K
Sbjct: 664 FLKLLK 669
>gi|209364099|ref|YP_001424866.2| NAD-dependent DNA ligase [Coxiella burnetii Dugway 5J108-111]
gi|207082032|gb|ABS76887.2| NAD-dependent DNA ligase [Coxiella burnetii Dugway 5J108-111]
Length = 673
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 273/669 (40%), Positives = 418/669 (62%), Gaps = 37/669 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+K+ R+ L++E++ HN YY+ P I D+ YD+L EL+K+E+KYPE +T S TQ
Sbjct: 8 AKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELQKLEKKYPETITPSSPTQR 67
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + + VHH M+SLDN F ++ + F+KRI LKL K EY+ E K DG+A+
Sbjct: 68 VGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRLKLDKPFEYVCEPKMDGVAL 127
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L +A+TRGDG GEN+T N I +PL L PEL+E+R EVL+ ++ F
Sbjct: 128 SLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPREGF 187
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
K N+ G K F NPRNAA+G LRQL+P+I + L F+ + +G L+G + P +H +
Sbjct: 188 AKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDFPKNHCD 247
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
+L W++ G+ + E V+ G+ +++Y+ + R +P++IDG+V K+N L Q +LG
Sbjct: 248 VLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQAELG 307
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F SRAPR+A+AYKF ++E +T +KAI Q+GRTG++TPVA L+PV + G+T++ ATLHN
Sbjct: 308 FVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGVVTPVARLEPVSVSGVTVSNATLHNF 367
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
E+YRK++++GDTV+V R+G+VIP++ IL+ RP +K+ KIP+ CP+C++++I E
Sbjct: 368 DELYRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPSRCPVCHAEVIKPEGE 427
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC G + C AQ + ++HF+SR+A++I GLG K++E + ++ +Y++
Sbjct: 428 AVARCVGG-LYCRAQLRESIKHFASRRALDIEGLGDKLVELFIQEKLIKDITGIYQLKKS 486
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L R+ K A N+L AI+KSK TT RF+YALGIR VG+T A+ LA +F L+ + K
Sbjct: 487 AITALPRMGEKSAENLLTAIEKSKKTTLPRFLYALGIRGVGDTIARTLARHFHELDLLMK 546
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK---------- 601
A+ E L I IG + F +Q + LI++L +G++W P K
Sbjct: 547 ASIETLQEIRDIGPVVAENIHAFFHQKHNAELINKLIHLGVHW---PQEKAVVKSEIAGK 603
Query: 602 -----------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
GGK + +SKNT+Y++ G+ PG K EKA L I ++D
Sbjct: 604 TFVLTGALKSLTREEAEEKIERSGGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLID 663
Query: 639 EKNFVKIVK 647
E+ F+K++K
Sbjct: 664 EEAFLKLLK 672
>gi|56479083|ref|YP_160672.1| NAD-dependent DNA ligase [Aromatoleum aromaticum EbN1]
gi|81356392|sp|Q5NYU3.1|DNLJ_AROAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|56315126|emb|CAI09771.1| NAD-dependent DNA ligase [Aromatoleum aromaticum EbN1]
Length = 681
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 274/671 (40%), Positives = 406/671 (60%), Gaps = 42/671 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R +L++EL H+ AYY+ D P + D +YD+L EL +E ++PELL DS T+ VG
Sbjct: 10 RAAQLRRELEAHDHAYYVLDAPTVPDAEYDRLFRELDALERRHPELLVPDSPTRRVGGAP 69
Query: 77 GENSKYVHHTFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAV 131
V H M+S+ + + VI F+ R+ N L+L + +EY+ ELKFDG+A+
Sbjct: 70 VPGLVPVRHAVPMLSIRTETDTTSGGVIAFDTRVRNALELGPHAPPVEYLGELKFDGLAI 129
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+LRYE G L +A+TRGDG GE++T ++ I +IPL L + PP L+EVR E+ + + F
Sbjct: 130 SLRYENGMLVRAATRGDGYTGEDVTHSVRTIRQIPLRLPGR-PPALIEVRGEIYMRRDAF 188
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELR---GMNMPSS 248
+LN + G K F NPRNAAAG +RQL+ +I + L FFA+G GE+ G NMP++
Sbjct: 189 ERLNARQSETGGKVFVNPRNAAAGAVRQLDARIAARRPLSFFAYGFGEIGESGGWNMPAT 248
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
E+L+ +G+ +C V SG + LI F+ +I R +LPY+IDGVVYK+N Q+
Sbjct: 249 QGEMLDALDALGIPVCEHRVVASGPDGLIAFHDRIAAARDSLPYDIDGVVYKVNRFDLQR 308
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
+LGF +R PR+A+A+K+ ++E +T++ I IQ+GRTG +TPVA LKPV + G+T+T ATL
Sbjct: 309 RLGFVTREPRWAVAHKYPAQEEITELVDIEIQVGRTGALTPVARLKPVFVGGVTVTNATL 368
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYI 428
HNE EI RK + IGD V+V R+G+VIP+I + ++ R + F +P CP+C S
Sbjct: 369 HNEEEIQRKGLLIGDQVIVRRAGDVIPQIVAPVVERRNGSERPFVMPQTCPVCGSHAEKQ 428
Query: 429 ESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488
+ RCSG C AQRK L HF+ R+AM+I GLG K++++LV+ IV T DLY++
Sbjct: 429 PDEAVTRCSGGLF-CPAQRKQALLHFAGRRAMDIEGLGDKLVDQLVDGGIVSTPADLYRL 487
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
L L R+++K A N+L AI+KS+ T +RFI+ALGIR+VGE TA+ELA +F +L+
Sbjct: 488 GLVKLANLPRMADKSAANLLAAIEKSRHATLARFIFALGIRNVGEATARELARHFGSLDA 547
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------LNNP-- 598
+ A E+L + +G + F + +R +I QLR G++W + P
Sbjct: 548 LMDADIERLQQVADVGPIVAHSIAGFFAEMHNREVIEQLRAAGVHWDEGVPAVAADGPAS 607
Query: 599 ----------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
+ GGKV +SK T+Y+V G + G KL KA +L + I
Sbjct: 608 GKTFVLTGALPTMSRDDAKALIESHGGKVSGSVSKKTDYVVAGAEAGSKLAKAQELGVAI 667
Query: 637 LDEKNFVKIVK 647
LDE ++++
Sbjct: 668 LDEDGLRRLLE 678
>gi|335042610|ref|ZP_08535637.1| NAD-dependent DNA ligase [Methylophaga aminisulfidivorans MP]
gi|333789224|gb|EGL55106.1| NAD-dependent DNA ligase [Methylophaga aminisulfidivorans MP]
Length = 672
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 271/660 (41%), Positives = 405/660 (61%), Gaps = 32/660 (4%)
Query: 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG 73
++ R EL++ L+ ++ YY+ DNP + D +YD+L EL+ IE +YP+LL+ DS TQ VG
Sbjct: 7 ITQRAAELRELLNHYSYQYYVLDNPEVPDAEYDRLFRELQAIESEYPQLLSADSPTQRVG 66
Query: 74 LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNL 133
+ V H M+SLDN F +++ F+KR+ + L K Y AE K DG+A+++
Sbjct: 67 GQALDKFDEVQHAIPMLSLDNVFDQQELSAFDKRVRDWLNTDKAQTYAAEPKLDGLAISI 126
Query: 134 RYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIK 193
RYE G L QA+TRGDG GE++T N+ I+ +PL L ++ P ++E+R E+ + K F K
Sbjct: 127 RYENGILVQAATRGDGTTGEDVTANVRTINSVPLKLQGEHIPAVVEIRGEIFMPKAGFEK 186
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253
LN+ + K F NPRNAAAG LRQL+ KI ++ L + +G+G + GM P+SHSE +
Sbjct: 187 LNQSQLANNKKPFVNPRNAAAGSLRQLDSKITASRPLEIYFYGIGVIEGMPRPNSHSEAM 246
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
G I E VL G+ + + ++R NL Y+IDGVV+K++ + Q++LGF
Sbjct: 247 TLIAGWGCRISPELKVLEGLEACQRYIDDLALRRDNLEYDIDGVVFKVDDTALQERLGFV 306
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
SRAPR+A+AYKF ++E +T ++ I IQ+GRTG +TPVA LKPV + G+T++ ATLHNE E
Sbjct: 307 SRAPRWAIAYKFPAQEEMTTVEDIEIQVGRTGALTPVARLKPVFVGGVTVSNATLHNEDE 366
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
I RK+++IGDTV+V R+G+VIP++ +I+S RP+D++ F +P CPIC S + E +
Sbjct: 367 IRRKDVRIGDTVIVRRAGDVIPEVVKAIISKRPDDAREFVMPTACPICGSDVEREEGEAV 426
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
+RCSG C AQRK ++HF+SRKA++I GLG K++E+LV+A + DL+ ++ +
Sbjct: 427 SRCSGGLF-CAAQRKEAIKHFASRKALDIDGLGDKLVEQLVDAGHIKDVADLFLLDVDTI 485
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
L+R+ K A N++ A+ +K T F RF+YALGIR VGE TA+ LA ++ +LE + +A+
Sbjct: 486 ASLERMGQKSAENLVNALNAAKATRFQRFLYALGIREVGEATARALALHYSSLEELMQAS 545
Query: 554 EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------- 594
E L+ I +G F Q +R +I +L VGI+W
Sbjct: 546 SESLMEIEDVGPVVAHHIETFFQQSHNREVIERLLSVGIHWPTEEKKQTNTALSGKTIVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ K G KV +SK T+Y+V G G KL KA L I+++DE
Sbjct: 606 TGTLQTLSRSEAKEKLLALGAKVAGSVSKKTDYVVAGADAGSKLTKAESLGIEVVDEATL 665
>gi|192361192|ref|YP_001982383.1| NAD-dependent DNA ligase [Cellvibrio japonicus Ueda107]
gi|254781281|sp|B3PGQ8.1|DNLJ_CELJU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|190687357|gb|ACE85035.1| DNA ligase, NAD-dependent [Cellvibrio japonicus Ueda107]
Length = 680
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 271/669 (40%), Positives = 406/669 (60%), Gaps = 33/669 (4%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
F +S + +L++++ HN YY D P I D +YD+L+ L+++E +YP +T DS TQ
Sbjct: 7 FDDVSAEIAQLREQIRYHNYRYYALDEPQIPDAEYDRLMQRLRELEAQYPASVTPDSPTQ 66
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + V H M+SLDN F + DVI FN+RI + LK T+NIEY ELK DG+A
Sbjct: 67 RVGAAPLSAFQTVEHQIPMLSLDNAFEEADVIAFNQRILDRLKSTENIEYACELKLDGLA 126
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L Y G L + +TRGDG+ GE+IT N+ I +PL L + P +LEVR EV + K
Sbjct: 127 VSLLYRDGVLVRGATRGDGSKGEDITQNLRTIASVPLKLLGEGYPAVLEVRGEVYMPKAG 186
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN+ G K F NPRNAAAG LRQL+ +I ++ L A+ VG + G +P +H+
Sbjct: 187 FNALNEKARSTGEKLFVNPRNAAAGALRQLDSRITASRPLEMCAYSVGLVEGGELPGTHT 246
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+L + G E + S + I FY+ I +R +L Y+IDG+V+K+N Q+ L
Sbjct: 247 GILAALKSWGFLTNKETATASTIADCIAFYQSIQARRDSLAYDIDGIVFKVNARELQESL 306
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF SRAPR+A+AYKF ++E +T ++ + Q+GRTG +TPVA L+PV + G+T++ ATLHN
Sbjct: 307 GFISRAPRWAIAYKFPAQEEMTVLQDVEFQVGRTGAVTPVARLQPVFVGGVTVSNATLHN 366
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R I IGDTV+V R+G+VIP+I + S RP D++ P+ CP+C S + +E
Sbjct: 367 RDEIQRLGIMIGDTVIVRRAGDVIPQIVQVVESRRPTDARPVLFPDHCPVCGSPVETLED 426
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
IARCSG + C AQRK ++HF+SRKA+++ GLG K++E+LV+ +V D+Y++
Sbjct: 427 EAIARCSGGLV-CAAQRKEAIKHFASRKALDVEGLGDKLVEQLVDTGLVSKLADIYQLTG 485
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
+ L ++R+ K A+N+L A++ SK TT ++FIYALGIR +GE TA+ LAN+F +LE +
Sbjct: 486 EQLAAMERMGEKSADNLLQALEASKHTTLAKFIYALGIREIGEATARNLANHFGSLEKLA 545
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A EE L+ + +G +F Q +R ++ LR GI+W
Sbjct: 546 EADEETLVQVNDVGPVGAHFVAEFFAQESNRQAVADLRAAGIHWQDLDVSTIEDLPLKGL 605
Query: 595 ----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
++ + K G KV +S T+Y+V G G KL+KA +LN+ ++D
Sbjct: 606 TYVLTGTLEVMSRDDAKAHLLALGAKVAGSVSAKTDYVVAGPGAGSKLQKARELNLNVMD 665
Query: 639 EKNFVKIVK 647
E+ + +++
Sbjct: 666 EEALLDLLR 674
>gi|410662662|ref|YP_006915033.1| NAD-dependent DNA ligase [Simiduia agarivorans SA1 = DSM 21679]
gi|409025019|gb|AFU97303.1| NAD-dependent DNA ligase [Simiduia agarivorans SA1 = DSM 21679]
Length = 674
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 268/656 (40%), Positives = 399/656 (60%), Gaps = 33/656 (5%)
Query: 20 ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGEN 79
ELK+ L+ H+ YY+ D+P + D++YD+L+ +L+ IE ++P+ +T DS +Q VG
Sbjct: 10 ELKQALNYHSYRYYVLDDPQLPDSEYDRLMQQLQAIEAEHPDWITADSPSQRVGAQPMAA 69
Query: 80 SKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGY 139
V H M+SLDN F++ED+ FNKR+ + LK + IE+ E K DGIAV+L YE G
Sbjct: 70 FSQVQHKLPMLSLDNAFNEEDMRDFNKRLQSLLKSAEPIEFACEPKLDGIAVSLMYENGL 129
Query: 140 LKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRY 199
L QA+TRGDG++GE+IT N+ I +PL L P LLEVR E+ + K F LN+
Sbjct: 130 LVQAATRGDGSVGEDITANVRTIGSVPLKLMGGDFPALLEVRGEIYMPKAGFEALNEKAR 189
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKI 259
G K F NPRNAAAG LRQL+ +I ++ L F + +G + G N+P H+++L Q+
Sbjct: 190 AAGEKVFVNPRNAAAGSLRQLDARITASRPLEFCCYNIGVVEGGNIPDRHTDVLQQLQRW 249
Query: 260 GLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRF 319
G I E + +SG++ + ++ ++ KR LPY+IDG+V+K+N Q +LGF +RAPR+
Sbjct: 250 GFLINREMAAVSGIDACLAYFARLGEKRAALPYDIDGIVFKVNSRQLQNQLGFVARAPRW 309
Query: 320 ALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNI 379
A+A+KF ++E +T++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R +
Sbjct: 310 AIAHKFPAQEEMTQLLEVEFQVGRTGSITPVARLQPVFVGGVTVSNATLHNRDEIERLGV 369
Query: 380 QIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGS 439
+GDTV+V R+G+VIP++ S I S RP D++ + P CP+C S + +E RC+G
Sbjct: 370 MVGDTVIVRRAGDVIPQVVSVITSKRPADARPVQFPENCPVCQSPVAQVEGEAAVRCTGG 429
Query: 440 WIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRV 499
+ C AQ K G++HF+SRKAM++ GLG K++E+LV+ ++ + DL+ + L+ L+R+
Sbjct: 430 LL-CAAQVKEGIKHFASRKAMDVDGLGDKLVEQLVDEGLISSVADLFSLTEAQLVGLERM 488
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
K A N+L A++ SK TT ++F++ LGIR VGETTA+ LA +F LE + A+E+ LL
Sbjct: 489 GEKSAQNLLAALEASKKTTLAKFLFGLGIREVGETTARTLAQHFGGLEAIMTASEDALLA 548
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL-NNPNTK----------------- 601
+P IG + + +F HR I QL VG W P +
Sbjct: 549 VPDIGPVSAASIRQFFESEKHREQIQQLIAVGFEWAETEPAARDALPLAGQTWVLTGTLE 608
Query: 602 --------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +S T+ LV G G KL KA L I +LDE+ F+
Sbjct: 609 QMTRDQAKDKLLALGAKVAGSVSAKTHCLVAGPGAGSKLTKAQGLGIPVLDEQAFL 664
>gi|451823191|ref|YP_007459465.1| DNA ligase (NAD+) [Candidatus Kinetoplastibacterium desouzaii
TCC079E]
gi|451775991|gb|AGF47032.1| DNA ligase (NAD+) [Candidatus Kinetoplastibacterium desouzaii
TCC079E]
Length = 713
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 299/699 (42%), Positives = 433/699 (61%), Gaps = 56/699 (8%)
Query: 3 FHAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPEL 62
F K I F+ + +V L+KE+ +HNIAYY+YD+P I D +YD L+ +L K+E YP L
Sbjct: 13 FLDKNDIEFNFIKNKVLSLRKEIDKHNIAYYVYDSPTIDDLEYDSLMDQLVKLESSYPSL 72
Query: 63 LTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL------KLTK 116
+ +S TQ VG + K V H+ M+SL N F D ++I F+ R+ + L +
Sbjct: 73 INNNSPTQRVGSKPSLSFKQVKHSIPMLSLSNAFQDTNIISFDNRLKSFLFNYELINMED 132
Query: 117 NIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPE 176
NI+Y +LK DG+AVNLRYE G L ASTRGDG IGE++T NI I IPL ++ P +
Sbjct: 133 NIDYFCDLKLDGLAVNLRYEKGCLVSASTRGDGYIGEDVTANIRTIKSIPLFIHDSVP-D 191
Query: 177 LLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHG 236
+LEVR E+ + KDF +LN Y+ G K F NPRNAAAG LR L+P ++ ++ L+FFA+G
Sbjct: 192 VLEVRGEIFMNHKDFQRLNDYQRLNGNKTFMNPRNAAAGSLRSLDPVLSASRKLNFFAYG 251
Query: 237 VGELRGMN---------------MPSSHSELLNWYQKIGLSICGEY-SVLSGVNKLIEFY 280
GE+ G+ S HS +LNW +G I +Y V++ VN++IE+Y
Sbjct: 252 WGEITGITDNLRKYSNSDHQTDLHSSYHSSMLNWISSLGFPINSQYHRVVNNVNEMIEYY 311
Query: 281 KKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQ 340
+INI R +LPY+IDGVVYK+N L Q +G++SRAPRFALA+KF +E++T++ INIQ
Sbjct: 312 SEINILRDSLPYDIDGVVYKVNSLYFQDLIGYSSRAPRFALAHKFSPEESVTQLTDINIQ 371
Query: 341 IGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSS 400
+GRTG ITPVA L PV++ G I+ ATLHNE+EI RK+++IGD V V R+G+VIP+I
Sbjct: 372 VGRTGAITPVACLNPVIVGGANISSATLHNENEIIRKDLRIGDFVRVRRAGDVIPEIIGP 431
Query: 401 ILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAM 460
+L LR D FK+P +CP+C SK+ I+ + RC+G + C AQ K L H RKA+
Sbjct: 432 VLELRSQDVIFFKMPTLCPVCKSKLSKIDGESVIRCTGG-LYCSAQLKQRLLHAVGRKAL 490
Query: 461 NIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFS 520
NI+GLG +I KLV++NIV + D+Y +N + LLR++ ++ K A N++ +I+KS+
Sbjct: 491 NIVGLGDVLINKLVDSNIVRSLADIYDLNIELLLRIENIAIKSATNLMESIKKSRHPKLD 550
Query: 521 RFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLH 580
+F++ALGIRHVGE TA +A F +L+ + + + L+ IP IG + F ++P +
Sbjct: 551 KFLFALGIRHVGEMTAFAIAKRFISLDSVINCSLDDLMTIPDIGHKVASSVNIFFSEPQN 610
Query: 581 RLLISQLRDVGI----YWLNNPNTK----------------------------GGKVVNF 608
LI L + G+ + + + N K GGKVVN
Sbjct: 611 IDLIRLLENRGLEPESFVVESNNLKPLDGKTFVITGKLKNLSRENIKKYIIENGGKVVNS 670
Query: 609 ISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
IS +TNYL+ G+ PG KL KA + N+ I++E + + +V+
Sbjct: 671 ISSSTNYLLSGEDPGSKLIKAKEANVTIINEDDLLSLVE 709
>gi|330445331|ref|ZP_08308983.1| DNA ligase, NAD-dependent [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328489522|dbj|GAA03480.1| DNA ligase, NAD-dependent [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 671
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 279/659 (42%), Positives = 398/659 (60%), Gaps = 34/659 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+++L H YY+ DNP I D +YD+++ +L KIE ++PE +T DS +Q VG E
Sbjct: 12 LREQLDYHGHRYYVEDNPEIPDAEYDRMMQQLLKIEAEHPEWVTVDSPSQRVGGTALEGF 71
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
V H M+SLDN F+D+D+ F KR+ + L+ + Y E K DG+AV+L YE G L
Sbjct: 72 TQVKHEIAMLSLDNAFNDDDLRAFQKRLQDRLRSGSELNYCCEPKLDGLAVSLMYENGVL 131
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
QA+TRGDG GENIT N+ I IPL L P LEVR EV + KK F LN+
Sbjct: 132 VQAATRGDGATGENITHNVRTIRAIPLKLQGTDWPARLEVRGEVFMPKKGFEALNEKALK 191
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIG 260
G K F NPRNAAAG LRQL+PKI + L F+A+ VG + G + + E L + G
Sbjct: 192 KGEKTFANPRNAAAGSLRQLDPKITATRPLSFYAYAVGVVEGRELAETQYERLCQLKAWG 251
Query: 261 LSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFA 320
L +C E + + ++I +++ I KR +L YEIDGVV K++ + TQ++LGF +RAPR+A
Sbjct: 252 LPMCPEIRKVDSIEEVIVYHQSIGEKRQSLGYEIDGVVIKVDGIDTQQQLGFVARAPRWA 311
Query: 321 LAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQ 380
+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN E+ R +
Sbjct: 312 IAYKFPAQEEMTVLNNVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEVERLGVM 371
Query: 381 IGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSW 440
IGDTV++ R+G+VIP+I S + S RP ++ P CP+C SKI IE +ARC+G
Sbjct: 372 IGDTVIIRRAGDVIPQIASVVESRRPESAQAIVFPTECPVCQSKIERIEGEAVARCTGGL 431
Query: 441 IECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS 500
C AQRK L+HF SRKA+++ G G+K+IE+LV+ +V T DL+K + + L+R+
Sbjct: 432 F-CQAQRKEALKHFVSRKALDVDGCGEKVIEQLVDREMVATPADLFKFSAGEVTVLERMG 490
Query: 501 NKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNI 560
K A ++ A++ SKLTT RFIY+LGIR VGE TA LANYF+ LE + +AT+EQL+ +
Sbjct: 491 PKSAQKLVDALKASKLTTLPRFIYSLGIREVGEATAANLANYFETLEAISQATKEQLIEV 550
Query: 561 PKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------------- 594
P +G F + + ++ L++VGI+W
Sbjct: 551 PDVGDVVAAHIFNFFREEHNMAVVKDLQEVGIHWPEIEKPEEGIELPLEGKTVVLTGSLS 610
Query: 595 -LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
L + K G KV +SK T+ LV G+ G KL KA +L+I+I DE+ V ++
Sbjct: 611 QLTRSDAKAALQKLGAKVTGSVSKKTDLLVAGEAAGSKLAKAQELDIEIWDEQKLVDLM 669
>gi|359298672|ref|ZP_09184511.1| NAD-dependent DNA ligase LigA [Haemophilus [parainfluenzae] CCUG
13788]
gi|402304465|ref|ZP_10823534.1| DNA ligase (NAD+) [Haemophilus sputorum HK 2154]
gi|400377734|gb|EJP30604.1| DNA ligase (NAD+) [Haemophilus sputorum HK 2154]
Length = 675
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 283/678 (41%), Positives = 416/678 (61%), Gaps = 39/678 (5%)
Query: 5 AKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLT 64
A KK++FS L L++ L ++ Y++ DNP++ D +YD+L+ ELK +E ++PE +T
Sbjct: 3 ASKKVDFSDLE----TLRQTLRKYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWIT 58
Query: 65 KDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAE 123
DS TQ VG E + H M+SLDN FSDE++ F +RI N + + + I + E
Sbjct: 59 PDSPTQRVGAKPLEGFAQITHELPMLSLDNAFSDEELDSFLRRIENLIAQDPEKIMFCCE 118
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
K DG+AV++ YE G L QA+TRGDG GE+IT NI I IPL LN++ PP LEVR E
Sbjct: 119 PKLDGLAVSILYENGSLVQAATRGDGTTGEDITANIRTIRNIPLKLNLENPPARLEVRGE 178
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
V + +K F LN+ G K F NPRNAAAG LRQL+PK+ + + L A+ +G
Sbjct: 179 VFMPQKGFNILNERALEKGEKTFANPRNAAAGSLRQLDPKVTRQRPLELNAYSIGIYESD 238
Query: 244 N-MPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKIN 302
+ +PS+H + L W + IG+ + GE + +G +L++FY +I KR NL Y+IDG V K+N
Sbjct: 239 DELPSTHYDRLQWLKSIGIPVNGEIRLATGREELLKFYAEIQSKRPNLGYDIDGTVLKVN 298
Query: 303 CLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGIT 362
++ Q++LGF SR+PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T
Sbjct: 299 DIALQEQLGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVT 358
Query: 363 ITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICN 422
++ ATLHN EI R + IGDTV++ R+G+VIP+I + RP ++K P CP+C
Sbjct: 359 VSNATLHNGDEIERLGVVIGDTVIIRRAGDVIPQIIGVVKERRPENAKKIHFPTACPVCQ 418
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
S +I IE +ARC+G C AQRK L+HF SRKAM+I G+G+K+IE+L+ ++ T
Sbjct: 419 SAVIRIEGEAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGEKLIEQLMARELIHTP 477
Query: 483 VDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY 542
DL+K++ +L+RL+R+ K A N L +I+KSK TT +RF+YALGIR VGE TA LAN+
Sbjct: 478 ADLFKLDLTSLMRLERMGEKSAQNALNSIEKSKSTTLARFLYALGIREVGEATALNLANH 537
Query: 543 FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------- 594
F L + +A E L+ + +G +F +P + ++ L G++W
Sbjct: 538 FGTLAAIREANLETLIQVQDVGEVVANHIFRFWQEPHNVEVVEDLIKQGVHWQDVVQVEI 597
Query: 595 LNNP------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAI 630
+NP + G KV +S T+YL+ G+K G KL KA
Sbjct: 598 ADNPLKNKNVVLTGTLTQLTRDEAKALLQSLGCKVSGSVSSKTDYLIAGEKAGSKLTKAQ 657
Query: 631 KLNIKILDEKNFVKIVKG 648
+L I +L E++FV ++K
Sbjct: 658 ELGITVLSEQDFVNLIKA 675
>gi|406979825|gb|EKE01532.1| hypothetical protein ACD_21C00107G0010 [uncultured bacterium]
Length = 665
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 290/659 (44%), Positives = 412/659 (62%), Gaps = 31/659 (4%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
+K L+ ++ +YY+ D P + D +YD+L EL+++E +PEL+T DS TQ +G E+
Sbjct: 8 IKNLLNDYSYSYYILDQPKVPDAEYDRLFRELQQLEAAHPELITPDSPTQRIGSKPSESF 67
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
K + H+ M+SLDN F+ +DVI F++RI LK+ IEY+ E K DG AV+L YE G L
Sbjct: 68 KQIRHSIPMLSLDNAFAQDDVINFDRRIHERLKIEAEIEYVCEPKIDGAAVSLVYEDGVL 127
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
+A+TRGDG +GE+I +N+ I +PLVL+ K P LE+R EV + K F K N+
Sbjct: 128 IKAATRGDGVVGEDILSNVRTIPSVPLVLHGKDFPRTLEIRGEVYMPLKGFEKFNENAEK 187
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIG 260
LG K F NPRNAAAG LRQL+P+I + L F + +GE+ +P+ HSE+L+ + G
Sbjct: 188 LGEKTFVNPRNAAAGSLRQLDPRITATRPLDIFCYALGEVTDGKLPTKHSEILSKIKAWG 247
Query: 261 LSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFA 320
L I E V+ GV+ ++YK I KR LPYEIDGVVYK+N L Q +LGF SRAPR+A
Sbjct: 248 LRINPEIKVVKGVSGCFDYYKSIGKKRDALPYEIDGVVYKVNDLQLQNQLGFVSRAPRWA 307
Query: 321 LAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQ 380
+A+KF ++E LT+I + Q+GRTG ITPVA L+PV + G T++ ATLHN E++RK+++
Sbjct: 308 IAHKFPAQEELTRILNVEFQVGRTGAITPVARLEPVFVGGATVSNATLHNIEEVWRKDVR 367
Query: 381 IGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSW 440
+GDTVV+ R+G+VIP++ S I RP +K +P CP+C S+II IE +I+RCSG
Sbjct: 368 VGDTVVIRRAGDVIPEVVSVIKERRPEGTKPVALPKHCPVCGSEIIKIEGEIISRCSGG- 426
Query: 441 IECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS 500
+ C AQRK ++HF+SR A+NI GLG +++++LV++ +V +LY + + + L+R
Sbjct: 427 LYCSAQRKETIKHFASRGALNIKGLGDRVVDQLVDSGLVNNVAELYDLTEEKVEALERKG 486
Query: 501 NKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNI 560
K A N+L AI SK TT RFIYALGIR VGE TA+ LA +F +L+ + A +L I
Sbjct: 487 EKSAKNLLQAIAASKSTTLPRFIYALGIREVGEATAQSLAQHFGDLDKIMHAEIGELEAI 546
Query: 561 PKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------LNNP---------------- 598
IG + F Q +R LI L GI+W +N P
Sbjct: 547 ADIGPVVATQIVTFFRQKHNRELIENLLKSGIHWPKVEKAVNQPLADQTFVLTGSLESLS 606
Query: 599 --------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGF 649
+ G KV +SKNT Y+V G PG KL KA KL +KI+DEK ++I++ +
Sbjct: 607 REEAKEKLHALGAKVTESVSKNTTYVVIGADPGSKLAKAEKLGVKIIDEKELLRILQTY 665
>gi|407939165|ref|YP_006854806.1| DNA ligase [Acidovorax sp. KKS102]
gi|407896959|gb|AFU46168.1| DNA ligase [Acidovorax sp. KKS102]
Length = 695
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 272/687 (39%), Positives = 410/687 (59%), Gaps = 43/687 (6%)
Query: 3 FHAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPEL 62
F A ++ ++ + ++ L+ +L++ YY+ D P + D +YD++ EL+ +E +P+L
Sbjct: 8 FSAPAPVDQAQPAIKIKALRDQLNQWAHQYYVLDEPTVPDAEYDRVFRELQALEAAHPDL 67
Query: 63 LTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDE--DVIIFNKRITNELKLTKN--- 117
++ DS TQ V E V HT M+S+ E F+ R+ EL LT
Sbjct: 68 VSPDSPTQRVIGAVMEGLAPVRHTVPMLSIHTETDTEATGAQAFDARVRRELGLTDADPA 127
Query: 118 IEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPEL 177
IEY+AE KFDG+A++LRYE G L QA+TRGDG +GE +T NI I +IPL L P +
Sbjct: 128 IEYVAEPKFDGLAMSLRYENGRLAQAATRGDGEVGEEVTHNIRTIRQIPLTLPDGVP-SV 186
Query: 178 LEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGV 237
LEVR EV + + DF LN+ + G K F NPRNAAAG +RQL+ I + L FFA+G+
Sbjct: 187 LEVRGEVYMRRADFDALNERQREQGGKTFVNPRNAAAGAVRQLDSNITAQRPLSFFAYGL 246
Query: 238 GEL----RGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYE 293
G + G + +H E+L + G + + + G +L+ F++++ R LPY+
Sbjct: 247 GAITPPAEGGPVFRTHYEMLQTLKSWGFPVAAQVQIAVGATELVAFHRQVGASRDALPYD 306
Query: 294 IDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALL 353
IDGVVYK+N L Q+ LGF +R PR+A+A+K+ ++E TKI+ I++Q+GRTG ITPVA L
Sbjct: 307 IDGVVYKVNSLQLQRDLGFKTREPRWAVAHKYPAQEMATKIEGIDVQVGRTGKITPVARL 366
Query: 354 KPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFK 413
PV + G+T+T ATLHN EI +K +++GDTV+V R+G+VIP++ + R F+
Sbjct: 367 APVFVGGVTVTNATLHNLFEIRKKGVRVGDTVIVRRAGDVIPEVVGVMPGQRLGYVPNFR 426
Query: 414 IPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKL 473
+P CP+C S ++ + RC+G C AQRK + HF++R+AM+I GLG K++++L
Sbjct: 427 MPTACPVCGSAVVREKGEANHRCTGGLF-CAAQRKEAILHFAARRAMDIEGLGDKLVDQL 485
Query: 474 VNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGE 533
V+AN++ T DLY++ +L+ L+R++ K A N+L A++KSK TT RF++ALGIRHVGE
Sbjct: 486 VDANVIRTLPDLYRLGLTSLIALERMAEKSAQNVLAALEKSKQTTLPRFLFALGIRHVGE 545
Query: 534 TTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIY 593
TAK+LA +F L+ + ATEEQLL + +G KA F QP +R ++ QLR G+
Sbjct: 546 ATAKDLARHFGVLDAIMDATEEQLLAVNDVGPIVAKAIRTFFEQPHNREVVEQLRACGVT 605
Query: 594 WLNNP--------------------------------NTKGGKVVNFISKNTNYLVKGQK 621
W P G KV +SK T+Y+V G++
Sbjct: 606 WPEGPVAERAPQILAGKTVVLTGTLPTLSRDAAKDLLEAAGAKVAGSVSKKTSYVVAGEE 665
Query: 622 PGKKLEKAIKLNIKILDEKNFVKIVKG 648
G KL KA +L + +LDE ++++ G
Sbjct: 666 AGSKLAKAQELGVPVLDEAGMLELLSG 692
>gi|82701780|ref|YP_411346.1| DNA ligase, NAD-dependent [Nitrosospira multiformis ATCC 25196]
gi|123754406|sp|Q2YBB7.1|DNLJ_NITMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|82409845|gb|ABB73954.1| DNA ligase, NAD-dependent [Nitrosospira multiformis ATCC 25196]
Length = 707
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 285/688 (41%), Positives = 409/688 (59%), Gaps = 53/688 (7%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S++S + EL+ + HNI YY D P I D +D+L EL+++E+++PEL+T DS TQ
Sbjct: 5 LSEISRHMRELRDAIELHNIRYYELDTPTIPDADFDKLFRELEELEQRHPELITPDSPTQ 64
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG+ + V H M+SL N F++ +V F++R+ L + + +EY E KFDG+A
Sbjct: 65 RVGIPPLKAFPQVVHRTPMLSLSNAFTEGEVEAFDRRVRQSLGIAQ-VEYAVEPKFDGLA 123
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI----KYPPELLEVRCEVLI 186
++L YE G L +TRGDG IGE++T N+ I IPL L P LEVR EVL+
Sbjct: 124 ISLCYENGMLVSGATRGDGYIGEDVTLNLKTIRSIPLGLRAGDGSAEVPAFLEVRGEVLM 183
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
K DF +LN+ + K F NPRNAAAG LRQL+P I N+ L FFA+G+G G N+P
Sbjct: 184 LKADFERLNRQQREKNEKTFINPRNAAAGSLRQLDPCITANRNLRFFAYGIGVCEGGNVP 243
Query: 247 -SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLS 305
+HS LL++ + + E ++GV L+E++ +IN R L Y+IDG VYK+N L
Sbjct: 244 HDTHSHLLDYLSSLRFPVMRERRTVTGVAGLLEYHHEINGLREQLSYDIDGTVYKVNELE 303
Query: 306 TQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITR 365
Q+KLGF SRAPRFALA+KF ++EA T++ I++Q+GRTG +TPVA LKPV + G T+T
Sbjct: 304 YQEKLGFVSRAPRFALAHKFPAQEATTELLGIDVQVGRTGALTPVARLKPVFVGGATVTN 363
Query: 366 ATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKI 425
ATLHNE EI RK++ IGD V V R+G+VIP++ + RP+++K F +P CP+C S+
Sbjct: 364 ATLHNEDEIRRKDVMIGDRVTVRRAGDVIPEVVAVQKESRPSNAKPFVMPEHCPVCGSRT 423
Query: 426 IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDL 485
I + + RC+G C AQRK + HF+SR+AMNI GLG K+++ LV+ I+ T DL
Sbjct: 424 IRLPGETLTRCTGGLF-CPAQRKQAILHFASRRAMNIHGLGDKLVDHLVDNAIIRTPADL 482
Query: 486 YKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN 545
YK+ L LDR+ K A NI+ I+KSK TT +RFIY+LGIR+VGE TA++LA YF
Sbjct: 483 YKLGLAALAALDRMGEKSAGNIINEIEKSKDTTLARFIYSLGIRNVGEATARDLARYFGG 542
Query: 546 LECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK---- 601
L+ + A E L + +G ++ F + +R ++ QLR GI W T+
Sbjct: 543 LDRLMDADVETLQQVSDVGPVVAQSIADFFGERHNREVVEQLRAAGIRWKEGAGTQTTDH 602
Query: 602 ------------------------------------------GGKVVNFISKNTNYLVKG 619
GGKV +SK T+Y+V G
Sbjct: 603 AAGSAHPGAAAASSKIAGRSFVLTGTLPTMSREEAREKIEAMGGKVAGSVSKKTDYVVAG 662
Query: 620 QKPGKKLEKAIKLNIKILDEKNFVKIVK 647
G K +KA++L + +LDE +++++
Sbjct: 663 ADAGSKYDKALELGVALLDEAELIRLLQ 690
>gi|407715941|ref|YP_006837221.1| NAD-dependent DNA ligase LigA [Cycloclasticus sp. P1]
gi|407256277|gb|AFT66718.1| NAD-dependent DNA ligase LigA [Cycloclasticus sp. P1]
Length = 673
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 273/665 (41%), Positives = 404/665 (60%), Gaps = 39/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV L++E+++HN YY YD P I D YD LL EL+ +E + PEL++ DS TQ VG
Sbjct: 10 RVQTLREEINQHNQNYYQYDAPKIPDADYDALLRELQLLEAENPELMSDDSPTQRVGSAP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
++ + V H M+SLDN F D++ F+KR+ ++IEY+ E K DG+A++L Y
Sbjct: 70 LDSFQQVEHAVPMLSLDNAFDDDEFEAFDKRVRERADGFEDIEYLVEPKLDGLAISLLYA 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE++T N+ I IPL L P LEVR EV + F +LN+
Sbjct: 130 DGVLVRAATRGDGKRGEDVTENVKTIGAIPLSLKGDNLPLRLEVRGEVFMPLSGFQQLNQ 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
LG K F NPRNAAAG LRQL+ KI + L F+++G+G + G +P + L
Sbjct: 190 QALALGEKPFANPRNAAAGSLRQLDSKITATRPLAFYSYGIGVVEGYELPQTQQALFQLL 249
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
GL + + + G+ + + Y+ + KR LPYEIDGVVYK+N + QK +GF SRA
Sbjct: 250 ATWGLPVSDQVTTARGMQQCHQAYQVLAQKRALLPYEIDGVVYKVNDFALQKAIGFVSRA 309
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A KF ++E +T++ I++Q+GRTG ITPVA L PV + G+T+T TLHNE E+ R
Sbjct: 310 PRWAIARKFPAQEKMTEVIGIDVQVGRTGAITPVARLAPVFVGGVTVTNVTLHNEGEMRR 369
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K++++GDTV+V R+G+VIP+I S +L R S++F++P CP+C S + E IARC
Sbjct: 370 KDVRVGDTVIVRRAGDVIPEIVSVVLEKRKPASQLFEMPVSCPVCGSTVERAEGEAIARC 429
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
C AQ K ++HF+SRKAM+I GLG K+IE+LV ++V T DLY++ + L L
Sbjct: 430 PAGLF-CRAQVKESIKHFASRKAMDIDGLGDKIIEQLVAQDLVKTPADLYRLTHEQLSSL 488
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+++K A+NI+ A++KSK+TT +F+YALGIR VGE TA L++YF L+ + AT E+
Sbjct: 489 ERMADKSASNIIAALEKSKVTTLPKFLYALGIREVGEVTAASLSSYFGQLDVIQSATVEE 548
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------- 601
L +P +G + + F +R +I+ L+++G+ W PN +
Sbjct: 549 LEKVPDVGPIVAQHIVAFFELAHNREVIASLKNLGVSW---PNVEAVPQDDQALSGKVFV 605
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G KV +SK T+Y+V G+ G KL+KA L + +L E +
Sbjct: 606 LTGTLSTMGRIEAKEALQLLGAKVTGSVSKKTDYVVAGEDAGSKLKKAQSLGVTVLSEDD 665
Query: 642 FVKIV 646
+K++
Sbjct: 666 LIKLI 670
>gi|419846348|ref|ZP_14369601.1| DNA ligase (NAD+) [Haemophilus parainfluenzae HK2019]
gi|386414088|gb|EIJ28657.1| DNA ligase (NAD+) [Haemophilus parainfluenzae HK2019]
Length = 669
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 276/667 (41%), Positives = 408/667 (61%), Gaps = 34/667 (5%)
Query: 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG 73
L ++ +L+++L R+ Y++ DNP I D +YD+L +LK +E ++PEL+T DS TQ VG
Sbjct: 3 LQQQIDKLRQDLRRYEYEYHVLDNPTIPDAEYDRLFHQLKALEAEHPELITADSPTQRVG 62
Query: 74 LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVN 132
+ H M+SLDN FSDE+ F KRI + L +L + + + E K DG+AV+
Sbjct: 63 AKPLSGFAQIRHEIPMLSLDNAFSDEEFYAFVKRIEDRLIRLPEPLTFCCEPKLDGLAVS 122
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
+ Y G L QA+TRGDG GE+IT NI I IPL L + PP LEVR EV + + F
Sbjct: 123 ILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLQLLMDNPPARLEVRGEVFMPHEGFE 182
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
+LN+ K F NPRNAAAG LRQL+PKI + L A+G+G G+++P++H +
Sbjct: 183 RLNQQALEKDEKTFANPRNAAAGSLRQLDPKITSKRPLVLNAYGIGIAEGVDLPNTHYDR 242
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
L W + IG+ + E + +G +++++FY+ I KR +L Y+IDG V KIN ++ Q+KLGF
Sbjct: 243 LQWLKSIGIPVNPEIRLCNGTDEVLDFYRDIQNKRSSLGYDIDGTVLKINDIALQEKLGF 302
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
S+APR+A+AYKF ++E LT++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 303 ISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGD 362
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
EI R +I IGDTVV+ R+G+VIP+I + RP D++ P CP+C+S I+ IE
Sbjct: 363 EIERLDIAIGDTVVIRRAGDVIPQIIGVLHDRRPADARPIVFPETCPVCDSAIVRIEGEA 422
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
+ARC+G C AQRK L+HF SRKAM+I G+G ++IE+LV+ +V T DL+K++
Sbjct: 423 VARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGRLIEQLVDRELVHTPADLFKLDLTT 481
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
L RL+R+ K A N L +++K+K TT +RFI+ALGIR VGE TA LAN+FK LE + A
Sbjct: 482 LTRLERMGTKSAENALASLEKAKNTTLARFIFALGIREVGEATALNLANHFKTLEALQNA 541
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------ 594
E L +P +G + F ++P + +++ L G++W
Sbjct: 542 DLEALQQVPDVGEVVANRILAFWHEPHNVAVVNDLIAQGVHWETVETKEVTENRFKGKTV 601
Query: 595 -LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
L T+ G KV +S T++++ G G KL KA +L + +L E+
Sbjct: 602 VLTGTLTQMGRNEAKALLQDMGAKVSGSVSAKTDFVIAGDAAGSKLTKAQELGVTVLTEE 661
Query: 641 NFVKIVK 647
F+ ++
Sbjct: 662 EFLAEIQ 668
>gi|419801451|ref|ZP_14326678.1| DNA ligase (NAD+) [Haemophilus parainfluenzae HK262]
gi|385193665|gb|EIF41022.1| DNA ligase (NAD+) [Haemophilus parainfluenzae HK262]
Length = 669
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 277/667 (41%), Positives = 406/667 (60%), Gaps = 34/667 (5%)
Query: 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG 73
L ++ L+++L R+ Y++ DNP I D +YD+L +LK +E +PEL+T DS TQ VG
Sbjct: 3 LQQQIDTLRQDLRRYEYEYHVLDNPTIPDAEYDRLFHQLKALETTHPELITADSPTQRVG 62
Query: 74 LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVN 132
+ H M+SLDN FSDE+ F KRI + L +L + + + E K DG+AV+
Sbjct: 63 AKPLSGFAQIRHEIPMLSLDNAFSDEEFYAFVKRIEDRLIRLPEPLTFCCEPKLDGLAVS 122
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
+ Y G L QA+TRGDG GE+IT NI I IPL L + PP LEVR EV + + F
Sbjct: 123 ILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLQLLMDNPPARLEVRGEVFMPQAGFE 182
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
+LN+ G K F NPRNAAAG LRQL+PKI + L A+ +G G+++P++H +
Sbjct: 183 RLNQLALEKGEKTFANPRNAAAGSLRQLDPKITSKRPLVLNAYSIGIAEGVDLPNTHYDR 242
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
L W + IG+ + E + +G +++++FY+ I KR +L Y+IDG V KIN ++ Q+KLGF
Sbjct: 243 LQWLKSIGIPVNPEIRLCNGTDEVLDFYRDIQNKRSSLGYDIDGTVLKINDIALQEKLGF 302
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
S+APR+A+AYKF ++E LT++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 303 ISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGD 362
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
EI R +I IGDTVV+ R+G+VIP+I + RP D++ P CP+C+S I+ IE
Sbjct: 363 EIERLDIAIGDTVVIRRAGDVIPQIIGVLHDRRPADARPIIFPKTCPVCDSAIVRIEGEA 422
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ +V T DL+K++
Sbjct: 423 VARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELVHTPADLFKLDLTT 481
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
L RL+R+ K A N L +++K+K TT +RFI+ALGIR VGE TA LAN+FK LE + A
Sbjct: 482 LTRLERMGTKSAENALASLEKAKNTTLARFIFALGIREVGEATALNLANHFKTLEALQNA 541
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------ 594
E L +P +G + F ++P + +++ L G++W
Sbjct: 542 DLEALQQVPDVGEVVANRILAFWHEPHNVAVVNDLIAQGVHWETVETKEVTENRFKGKTV 601
Query: 595 -LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
L T+ G KV +S T++++ G G KL KA +L + +L E+
Sbjct: 602 VLTGTLTQMGRNEAKALLQDMGAKVSGSVSAKTDFVIAGDAAGSKLTKAQELGVTVLTEE 661
Query: 641 NFVKIVK 647
F+ ++
Sbjct: 662 EFLAEIQ 668
>gi|395762161|ref|ZP_10442830.1| DNA ligase [Janthinobacterium lividum PAMC 25724]
Length = 786
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 267/595 (44%), Positives = 373/595 (62%), Gaps = 20/595 (3%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV L EL+RH AY++ DNP I D +YDQL EL+ +E +P L T DS T VG
Sbjct: 12 RVLALTAELNRHLHAYHVLDNPTIPDAEYDQLFVELQALEAAHPHLRTPDSPTLRVGAAP 71
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-KNIEYIAELKFDGIAVNLRY 135
+ V H M+SL+NGFSD+D++ F++R+ L L ++Y AE+KFDG+A+NLRY
Sbjct: 72 LPQFEQVTHAVPMLSLNNGFSDDDIVNFDRRVREGLDLDGAGVDYAAEVKFDGLAINLRY 131
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
E G QA+TRGDG GE++T NI I IPL L P +L+VR EV+++K DF +LN
Sbjct: 132 ENGLFVQAATRGDGATGEDVTANIRTIAGIPLRLQGDKIPAVLDVRGEVMMFKADFARLN 191
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
+ + G K+F NPRNAAAG LRQL+ +I + L F+A+G+G L G MP SHS LL+W
Sbjct: 192 ERQRVAGHKEFANPRNAAAGSLRQLDSRITAQRKLRFYAYGIGALDGAVMPVSHSALLDW 251
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
Y +G+ + E V+ G L+ +Y I +R LPYEIDGVVYK+N Q+ LGF SR
Sbjct: 252 YDTLGIPVSKERKVVQGAQGLLAYYADIGARRPALPYEIDGVVYKVNATQDQQALGFVSR 311
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APRFALA+KF ++EALT + I+IQ+GRTG +TPVA L PV + G+T+T ATLHN E+
Sbjct: 312 APRFALAHKFPAEEALTLVLGIDIQVGRTGAMTPVARLAPVSVGGVTVTNATLHNADEVL 371
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKI-FKIPNICPICNSKIIYIESNLIA 434
RK++++GDTVVV R+G+VIP++ S +L RP + + FK+ CP+C+S ++ E IA
Sbjct: 372 RKDVRVGDTVVVRRAGDVIPEVLSVVLDKRPEPAPLPFKMLERCPVCDSHVVREEGEAIA 431
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RCSG C AQRK +HF+ R+ M+I GLG++ I+ LV V DLY++ +LL
Sbjct: 432 RCSGGLF-CSAQRKEAFRHFAGRRMMDIEGLGERYIDTLVELEYVHGLADLYRLTLDSLL 490
Query: 495 RL-----------------DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAK 537
+ ++ K A N+L IQ SK RF++ALGIRHVGE+TAK
Sbjct: 491 EMKVRADERDASTPETVQQGKIPTKWAENLLAGIQASKHPPLERFLFALGIRHVGESTAK 550
Query: 538 ELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI 592
LA + +L+ + +A L +P IG T ++ F + ++ + L D G+
Sbjct: 551 TLAEWLGSLDYVRRAPAALLRVLPDIGGTVAESIADFFAEEKNQQALQALLDAGV 605
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 599 NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
GGKV +SK T Y+V G G KL KA +L + +LDE
Sbjct: 733 EAAGGKVSGSVSKKTAYVVAGSDAGSKLAKAEELGVAVLDE 773
>gi|74316642|ref|YP_314382.1| NAD-dependent DNA ligase [Thiobacillus denitrificans ATCC 25259]
gi|123745545|sp|Q3SL40.1|DNLJ_THIDA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|74056137|gb|AAZ96577.1| NAD-dependent DNA ligase [Thiobacillus denitrificans ATCC 25259]
Length = 686
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 266/662 (40%), Positives = 402/662 (60%), Gaps = 43/662 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L++E+ RHN AYY+ D P I D +YD+L EL+ +E +PEL+ DS T+ VG
Sbjct: 9 RAAALRREIERHNYAYYVLDAPTIPDAEYDRLYHELEALEAAHPELVAADSPTRRVGGQP 68
Query: 77 GENSKYVHHTFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAV 131
K V H M+S+ + + F+ R+ EL L +EY AELKFDG+A+
Sbjct: 69 LAGFKPVRHAVPMLSIRTETDTTAAGARAFDVRVRKELGLAPADPPVEYAAELKFDGLAI 128
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
NLRYE G L A+TRGDG GE++T N+ + IPL L+ PP +LEVR EV + + DF
Sbjct: 129 NLRYEAGVLVAAATRGDGETGEDVTQNVRTVRTIPLRLHGDAPPAVLEVRGEVFMRRDDF 188
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM-NMPSSHS 250
+ N + G NPRN AAG +RQL+P I + L F+A+G+GE+ G + P++H
Sbjct: 189 ERYNAQQRAAGKPTLVNPRNGAAGSIRQLDPAIAGQRPLSFYAYGLGEVVGWPDAPATHG 248
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
L+ Q +G+ + E V +GV+ LI F+ I +R LP++IDGVVYK+N + Q++L
Sbjct: 249 ATLDALQGLGVPVSAERCVCNGVDDLIAFHDDIAARRDQLPFDIDGVVYKVNAFALQREL 308
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +R PR+A+A+K+ ++E LT + I + +GRTG +TPVA L PV + G+T+T ATLHN
Sbjct: 309 GFLTREPRWAVAHKYPAQEQLTTVLGIGVHVGRTGALTPVARLAPVFVGGVTVTNATLHN 368
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSK----IFKIPNICPICNSKII 426
+ EI RK+ ++GDTV+V R+G+VIP+I +++L RP I + +CP C S ++
Sbjct: 369 QDEIDRKDTRVGDTVIVRRAGDVIPEIVATVLERRPQPEPPRFNILQSYPVCPECGSHVV 428
Query: 427 YIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY 486
+E +ARC+G + C AQRK L HF+SR+AM+I G+G+K++++LV+ +V T DLY
Sbjct: 429 RLEGEAVARCTGG-LYCPAQRKQALLHFASRRAMDIDGVGEKLVDQLVSRELVRTPADLY 487
Query: 487 KINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546
++ + L L+R++ K A N++ AI+ SK TT +RFIYALGIR+VGETTA++LA +F L
Sbjct: 488 RLPLETLAGLERMAEKSARNLIQAIETSKSTTLARFIYALGIRNVGETTARDLARHFGAL 547
Query: 547 ECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPN------- 599
+ + A E LL + +G ++ +F +P + ++ +LR +G++W
Sbjct: 548 DALLGANETALLGVRDVGPIVAQSIAQFFAEPHNLEVVGKLRALGVHWPETTGMQQSGGI 607
Query: 600 -------------------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNI 634
+ GGKV +SK T+Y+V G++ G KL KA +L +
Sbjct: 608 LSGKTLVLTGTLPALTRDQAKERIESAGGKVAGSVSKKTDYVVAGEEAGSKLAKARELGV 667
Query: 635 KI 636
I
Sbjct: 668 TI 669
>gi|160872442|ref|ZP_02062574.1| DNA ligase, NAD-dependent [Rickettsiella grylli]
gi|159121241|gb|EDP46579.1| DNA ligase, NAD-dependent [Rickettsiella grylli]
Length = 674
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 290/653 (44%), Positives = 398/653 (60%), Gaps = 34/653 (5%)
Query: 28 HNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTF 87
HN YY+ D P+I+D YD L EL+ IE++YPEL+T DS TQ VG K+V H
Sbjct: 22 HNYHYYILDAPLINDATYDTLFRELEAIEKRYPELITPDSPTQRVGSTPLTTFKHVQHAL 81
Query: 88 KMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRG 147
M+SL+N FS+++V+ FNKRI L+ + IEY E K DGIAV+L Y G L +A+TRG
Sbjct: 82 PMLSLENAFSEKEVLAFNKRIQERLQTQEAIEYACEPKLDGIAVSLTYHKGQLIRAATRG 141
Query: 148 DGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFT 207
DG+ GE+IT NI I IPL L ++ P LEVR EV I KK F +LN+ G K F
Sbjct: 142 DGHRGEDITLNIRTILSIPLKLQGQHYPNDLEVRGEVYIPKKKFQQLNEMLKKKGEKMFV 201
Query: 208 NPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEY 267
NPRNAAAG LRQLNPKI + L FF H +G ++ + S+H+ +LN +Q+ GL C +
Sbjct: 202 NPRNAAAGSLRQLNPKITAERPLAFFTHSIGIIKNGKLASTHTAILNQFQQWGLPRCPQT 261
Query: 268 SVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLS 327
+ + + +Y KI +R +LPYEIDGVVYK+N L+ QK+LGF SRAPR+ALAYKF +
Sbjct: 262 QLAKNITAALAYYHKIQKERASLPYEIDGVVYKVNALALQKQLGFISRAPRWALAYKFPA 321
Query: 328 KEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVV 387
+EA TKI +I Q+GRTG +TPVA L+PV + G T++ ATLHN E+ RK+I+ GDTV++
Sbjct: 322 EEASTKILSIEFQVGRTGALTPVARLQPVFVGGATLSNATLHNMDEVKRKDIREGDTVII 381
Query: 388 HRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQR 447
R+G+VIP++ I RP +++ +P CPIC S II +E+ IARCSG+ C QR
Sbjct: 382 RRAGDVIPEVVQVIKKKRPANTRPLTLPKQCPICCSAIIKVETEAIARCSGALF-CPLQR 440
Query: 448 KAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNI 507
K ++HF+SR+AMNI GLG K+ +LV+ ++ +LY + K L LD K A +
Sbjct: 441 KEAIKHFASRQAMNIEGLGTKIAYQLVDTGLIQDVSNLYHLTIKQLAALDHFGEKSAQKL 500
Query: 508 LLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTT 567
AIQ SK TT +RF+Y+LGIR VG +TA LA +F+ L+ + A L IP IG
Sbjct: 501 HRAIQASKKTTLTRFLYSLGIRDVGISTALNLAQHFQALKPIMDADSALLQTIPDIGPVV 560
Query: 568 VKAFIKFINQPLHRLLISQLRDVGIYW---------LNNPNTK----------------- 601
KF ++ + +I L GI W +P T
Sbjct: 561 ATHIKKFFSEQHNLDVIKNLLAAGITWPKPEFIPPSQTSPFTGKNVVLTGSLSTLSREQA 620
Query: 602 -------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
G KV + +SKNT+Y++ G PG KL +A L + +L EK F++++K
Sbjct: 621 TQLLQKLGTKVSSSVSKNTDYVIAGDNPGSKLTRAHALKLTVLTEKKFLELLK 673
>gi|386827008|ref|ZP_10114115.1| DNA ligase, NAD-dependent [Beggiatoa alba B18LD]
gi|386427892|gb|EIJ41720.1| DNA ligase, NAD-dependent [Beggiatoa alba B18LD]
Length = 684
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 276/684 (40%), Positives = 420/684 (61%), Gaps = 52/684 (7%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S + ++ L++EL++H+ YY+ D P I D++YD+L+ EL+ +E +YPE +T DS TQ
Sbjct: 5 STIQQQINTLRQELNKHSYNYYVLDAPTIPDSEYDRLMRELETLEAQYPETITSDSPTQR 64
Query: 72 VGLVGGENSKYVH--HTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGI 129
VG G S++ H M+SL+N FS E++ F++RI +L L +IEY AE K DG+
Sbjct: 65 VG--GQALSQFAEFVHKQPMLSLNNAFSQEELNDFDRRIREKLNL-DSIEYTAEPKIDGL 121
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
A++L YE G L A+TRGDG GE++T NI I IPL L P +LEVR EV +
Sbjct: 122 AISLHYENGILVAAATRGDGTHGEDVTQNIRTIKIIPLRLQGDDYPAILEVRGEVYMPLA 181
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F N+ + G + F NPRNAAAG LRQL+P++ ++ L +G G + G +P +
Sbjct: 182 KFNAYNQQQKQKGERVFANPRNAAAGSLRQLDPRMTASRPLSMTCYGTGIIEGGTLPDKY 241
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
S+++ ++ GL + V+ G ++Y+ ++ +R +P++IDGVVYK+N +
Sbjct: 242 SDIVACLKRWGLPTSAYFKVVQGAQGCWDYYEDLHKQRAKMPFDIDGVVYKVNSNKQRDI 301
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
+GF SRAPR+ALA+K ++E +T++ AI+IQ+GRTG +TPVA L PV + G+T+T ATLH
Sbjct: 302 MGFISRAPRWALAHKMPAQEVMTELLAIDIQVGRTGALTPVARLAPVSVGGVTVTNATLH 361
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N+ EI RK+I++GDTV++ R+G+VIP+I +S+L RP +S+ F +P CP+C S ++ ++
Sbjct: 362 NQDEIDRKDIRVGDTVIIRRAGDVIPEIVASVLEKRPANSQAFVLPTQCPVCGSAVVRLK 421
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC GS + C AQRK +QHF+SRKAMNI GLG+K+IE+LV+AN++ DLY++
Sbjct: 422 EEAVARCEGS-LNCPAQRKQAIQHFASRKAMNIEGLGEKLIEQLVDANLIHNPADLYRLT 480
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L L+R+ K A+N++ A+ S+ TT +RF+YALGIR VGE+TA+ LANYF +L +
Sbjct: 481 SDQLANLERMGKKSADNVIQALTNSRQTTLARFLYALGIREVGESTARTLANYFGDLNAI 540
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN-NPNTK------- 601
+A+E L +P +G + F ++P ++ +I +L+ G+ W NP
Sbjct: 541 QQASEIDLQKVPDVGEVVAQQIYHFFHEPHNQAIILKLQQAGVQWATINPVASNATSNNV 600
Query: 602 --------------------------------------GGKVVNFISKNTNYLVKGQKPG 623
G KV + +SK T+Y+V G+ G
Sbjct: 601 TNTTATNVNSIFTGKSVVLTGTLTQMSREDATERLLQMGAKVSSSVSKKTDYVVAGENAG 660
Query: 624 KKLEKAIKLNIKILDEKNFVKIVK 647
KLEKA L + ILDE F+ +K
Sbjct: 661 SKLEKAQTLGVTILDESQFLTHLK 684
>gi|410086935|ref|ZP_11283641.1| DNA ligase [Morganella morganii SC01]
gi|409766582|gb|EKN50674.1| DNA ligase [Morganella morganii SC01]
Length = 677
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 274/664 (41%), Positives = 399/664 (60%), Gaps = 36/664 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ +L+ L H Y++ DNP + D +YD+L+ LK +E ++PEL+T DS TQ VG
Sbjct: 14 IEQLRATLRHHEYCYHVLDNPEVPDAEYDRLMQRLKALEAEHPELITPDSPTQRVGASPL 73
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
+ V H M+SLDN F +E + F+KR+ + LK T+++ + ELK DG+AV+L YE
Sbjct: 74 SAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKDTQDLTFCCELKLDGLAVSLLYEN 133
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L QA+TRGDG GENIT N+ I IPL L + P+ +E+R EV + +K F +N+
Sbjct: 134 GSLVQAATRGDGTTGENITANVRTIRAIPLKLRGENIPQRIEIRGEVFMPQKGFEAMNEE 193
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
G K F NPRNAAAG LRQL+P + + L FF +GVG L G +P SH + L ++
Sbjct: 194 ARRTGGKVFANPRNAAAGSLRQLDPAVTAKRPLTFFCYGVGVLEGGTLPGSHYDRLQQFK 253
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
GL + +G +++FY K+ R L ++IDGVV K++ ++ Q+ LGF SRAP
Sbjct: 254 AWGLPVSDRVMRCTGSQAVLDFYHKVEESRPVLGFDIDGVVIKVDSIALQEALGFVSRAP 313
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A A+KF ++E +T ++ + Q+GRTG ITPVA L+PVL+ G+T++ ATLHN EI R
Sbjct: 314 RWATAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHNADEISRL 373
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
++IGDTVV+ R+G+VIP++ + S RP D++ + P CP+C S I +E +ARC+
Sbjct: 374 GLKIGDTVVIRRAGDVIPQVVGVVESERPADARDIEFPLSCPVCGSDIERVEGEAVARCT 433
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G I C AQRK L+HF SR+AM++ GLG K+I++LV+A V T DL+++ L LD
Sbjct: 434 GGLI-CGAQRKEALKHFVSRRAMDVDGLGDKIIDQLVDAEYVKTPADLWRLTPGKLTGLD 492
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+ K A + A+ SK TTF+RF+YALGIR VGE TA LA +F L+ + +A E L
Sbjct: 493 RMGPKSAQKLTDALAASKQTTFARFLYALGIREVGEATAANLAEHFGTLDALQQADTEAL 552
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQLR-DVGIYW----------LNNP-------- 598
+P +G K + F + +R +I+ L DVGI W L+NP
Sbjct: 553 KAVPDVGEVVAKHVVNFFREQHNREVITDLTGDVGISWPDVVAVDASALDNPFAGKVVVL 612
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ +V G+ G KL KA +L IK+++E F
Sbjct: 613 TGSLQILTRDEAKDRLTALGAKVTGSVSKKTDLVVAGEAAGSKLAKAEELGIKVINEDEF 672
Query: 643 VKIV 646
+ ++
Sbjct: 673 IALL 676
>gi|315634861|ref|ZP_07890143.1| NAD-dependent DNA ligase LigA [Aggregatibacter segnis ATCC 33393]
gi|315476413|gb|EFU67163.1| NAD-dependent DNA ligase LigA [Aggregatibacter segnis ATCC 33393]
Length = 671
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 278/665 (41%), Positives = 400/665 (60%), Gaps = 34/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+K L H Y++ D+P I D++YD+L +LK +E+++PEL+T DS TQ VG
Sbjct: 8 QIDDLRKTLRYHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELITADSPTQRVGARP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-KNIEYIAELKFDGIAVNLRY 135
+ H M+SLDN FSDE+ + F KRI + L L + + + E K DG+AV++ Y
Sbjct: 68 LSEFAQIKHELPMLSLDNAFSDEEFLAFVKRIQDRLVLVPEPLTFCCEPKLDGLAVSILY 127
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
G L QA+TRGDG GE+IT NI I IPL L PP LEVR EV + F +LN
Sbjct: 128 VNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPHDGFERLN 187
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
+ G K F NPRNAAAG LRQL+PKI + L F A+ +G +G+++P +H E L W
Sbjct: 188 ERALEQGEKTFANPRNAAAGSLRQLDPKITSQRPLVFNAYSIGVAQGIDLPPTHFERLQW 247
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ IG+ + E + GV ++ FY+ + KR +L Y+IDG V K+N + Q++LGF S+
Sbjct: 248 LKSIGVPVNSEIRLCDGVENVLNFYRTMMEKRSSLGYDIDGTVLKVNDIELQQRLGFISK 307
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI
Sbjct: 308 APRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTVSNATLHNGDEIE 367
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
R NI IGDTV++ R+G+VIP+I + RP +++ P CP+C+S I+ IE +AR
Sbjct: 368 RLNIAIGDTVIIRRAGDVIPQIIGVVHDRRPANARQIVFPTRCPVCDSLIVRIEGEAVAR 427
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ +V T DL+K++ L R
Sbjct: 428 CTGGLF-CAAQRKEALKHFVSRKAMDIDGVGAKLIEQLVDRELVHTPADLFKLDLTTLTR 486
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L+R+ K A N L +++K+K TT +RFI+ALGIR VGE TA LAN+FK LE + A E
Sbjct: 487 LERMGPKSAENALASLEKAKHTTLARFIFALGIRDVGEATALNLANHFKTLEALQNADLE 546
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--------NP--------- 598
QL +P +G F + + +++ L G++W NP
Sbjct: 547 QLQQVPDVGEVVANRIFVFWREEHNVAVVNDLIAQGVHWETVEVQDVKENPFKGKTVVLT 606
Query: 599 ---------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +S T+Y++ G+ G KL KA +L +++L E+ F+
Sbjct: 607 GTLSQMGRNDAKALLQQLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFL 666
Query: 644 KIVKG 648
V G
Sbjct: 667 AWVNG 671
>gi|325576592|ref|ZP_08147310.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC
33392]
gi|325161155|gb|EGC73270.1| NAD-dependent DNA ligase LigA [Haemophilus parainfluenzae ATCC
33392]
Length = 675
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 279/667 (41%), Positives = 402/667 (60%), Gaps = 34/667 (5%)
Query: 10 NFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLT 69
N L ++ L+ +L R+ Y++ DNP I D +YD+L +LK +E +PEL+T DS T
Sbjct: 7 NIMSLQQQIDTLRHDLRRYEYEYHVLDNPTIPDAEYDRLFHQLKALEAAHPELITADSPT 66
Query: 70 QHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDG 128
Q VG + H M+SLDN FSDE+ F KRI + L +L + + + E K DG
Sbjct: 67 QRVGAKPLSGFAQIRHEIPMLSLDNAFSDEEFYAFVKRIEDRLIRLPEPLTFCCEPKLDG 126
Query: 129 IAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYK 188
+AV++ Y G L QA+TRGDG GE+IT NI I IPL L + PP LEVR EV +
Sbjct: 127 LAVSILYVNGILTQAATRGDGATGEDITANIRTIRNIPLQLLMDNPPARLEVRGEVFMPH 186
Query: 189 KDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSS 248
F +LN+ G K F NPRNAAAG LRQL+PKI + L A+G+G G+++P++
Sbjct: 187 AGFERLNQQALEKGEKTFANPRNAAAGSLRQLDPKITSKRPLVLNAYGIGIAEGVDLPNT 246
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
H + L W + IG+ + E + +G +++++FY+ I KR L Y+IDG V KIN ++ Q+
Sbjct: 247 HYDRLQWLKSIGIPVNPEIRLCNGTDEVLDFYRDIQNKRSALGYDIDGTVLKINDIALQE 306
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
KLGF S+APR+A+AYKF ++E LT++ + Q+GRTG ITPVA L+PV + G+T++ ATL
Sbjct: 307 KLGFISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATL 366
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYI 428
HN EI R +I IGDTVV+ R+G+VIP+I + RP D++ P CP+C+S I+ I
Sbjct: 367 HNGDEIERLDIAIGDTVVIRRAGDVIPQIIGVLHDRRPADARPIVFPKTCPVCDSAIVRI 426
Query: 429 ESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488
E +ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ +V T DL+K+
Sbjct: 427 EGEAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELVHTPADLFKL 485
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
+ L RL+R+ K A N L +++K+K TT +RFI+ALGIR VGE TA LAN+FK LE
Sbjct: 486 DLTTLTRLERMGAKSAENALASLEKAKNTTLARFIFALGIREVGEATALNLANHFKTLEA 545
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------- 594
+ A E L +P +G + F ++P + +++ L G+ W
Sbjct: 546 LQNADLEALQQVPDVGEVVANRILAFWHEPHNVAVVNDLIAQGVRWETVETKEVAENRFK 605
Query: 595 -----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
L T+ G KV +S T++++ G G KL KA +L + +
Sbjct: 606 GKTVVLTGTLTQMGRNEAKALLQDMGAKVSGSVSAKTDFVIAGDAAGSKLTKAQELGVTV 665
Query: 637 LDEKNFV 643
L E+ F+
Sbjct: 666 LTEEEFL 672
>gi|395009330|ref|ZP_10392877.1| DNA ligase, NAD-dependent [Acidovorax sp. CF316]
gi|394312640|gb|EJE49770.1| DNA ligase, NAD-dependent [Acidovorax sp. CF316]
Length = 686
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 273/681 (40%), Positives = 413/681 (60%), Gaps = 53/681 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ L+ +L+R YY+ D P + D +YD++ EL+ +EE +P+L+T DS TQ V +G
Sbjct: 6 QIQALRDQLNRWAHQYYVLDEPTVPDAEYDRVFRELQALEEAHPDLITPDSPTQRV--IG 63
Query: 77 G--ENSKYVHHTFKMMSLDNGFSDE--DVIIFNKRITNELKLTKN---IEYIAELKFDGI 129
G + V H M+S+ E F+ R+ EL L ++ IEY+AE KFDG+
Sbjct: 64 GVMDGLAPVRHAVPMLSIHTETDTEATGAQAFDVRVRRELGLAESDPVIEYVAEPKFDGL 123
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
A++LRYE G L QA+TRGDG +GE++T NI I +IPL+L PP LLEVR EV + +
Sbjct: 124 AMSLRYEGGRLVQAATRGDGEVGEDVTHNIRRIRQIPLILPAGVPP-LLEVRGEVYMRRA 182
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL----RGMNM 245
DF LN+ + G K F NPRNAAAG +RQL+ I+ + L FFA+G+G G M
Sbjct: 183 DFDALNERQREQGGKTFVNPRNAAAGAVRQLDSGISAQRPLSFFAYGLGATTPANEGGRM 242
Query: 246 PSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLS 305
++H E+L ++ G + + + G +L+ F++++ R LPY+IDGVVYK+N L
Sbjct: 243 FATHYEMLQTLKEWGFPVAAQVQIAKGAAELVAFHQQVGASRDQLPYDIDGVVYKVNRLD 302
Query: 306 TQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITR 365
Q+ LGF +R PR+A+A+K+ ++E T+++ I+IQ+GRTG +TPVA L PV + G+T+T
Sbjct: 303 LQRDLGFKTREPRWAVAHKYPAQEMATRVEGIDIQVGRTGKLTPVARLAPVFVGGVTVTN 362
Query: 366 ATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKI 425
ATLHN EI +K +++GDTV+V R+G+VIP++ + RP F++P CP+C S +
Sbjct: 363 ATLHNLFEIRKKQVRVGDTVIVRRAGDVIPEVVGVMPGQRPAYVPNFRMPRQCPVCGSDV 422
Query: 426 IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDL 485
+ RC+G C AQRK + HF++R+AM+I GLG K++++LV AN++ T DL
Sbjct: 423 VREPGEANHRCTGGLF-CAAQRKEAILHFAARRAMDIEGLGDKLVDQLVEANVIRTLPDL 481
Query: 486 YKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN 545
Y++ +L+ L+R++ K A N+L A++KSK TT +RF++ LGIRHVGE+TA++LA +F
Sbjct: 482 YRLGLTSLVALERMAEKSAQNVLAALEKSKETTLARFLFGLGIRHVGESTARDLAKHFGT 541
Query: 546 LECMFKATE------EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNN-P 598
L+ M AT EQLL +P +G ++F F QP +R +I QLR G+ W P
Sbjct: 542 LDAMIGATAETAATVEQLLEVPDVGPIVAQSFHTFFQQPHNREVIEQLRACGVRWPEGAP 601
Query: 599 NTK-------------------------------GGKVVNFISKNTNYLVKGQKPGKKLE 627
K G KV +SK T+Y+V G++ G KL
Sbjct: 602 AEKVAQVLAGKTFVLTGTLPTLGRDAAKDMLEAAGAKVSGSVSKKTSYVVAGEEAGSKLA 661
Query: 628 KAIKLNIKILDEKNFVKIVKG 648
KA +L + ++DE + ++ G
Sbjct: 662 KAEELGVPVIDEAGMLALLAG 682
>gi|381159910|ref|ZP_09869142.1| DNA ligase, NAD-dependent [Thiorhodovibrio sp. 970]
gi|380877974|gb|EIC20066.1| DNA ligase, NAD-dependent [Thiorhodovibrio sp. 970]
Length = 682
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 271/672 (40%), Positives = 403/672 (59%), Gaps = 37/672 (5%)
Query: 6 KKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTK 65
K KI + R +EL+ L HN YY+ D+P I D ++D LL EL++IEE++P+L T
Sbjct: 2 KDKIPAGSSAARASELRTLLEHHNYRYYVLDDPEIPDAEFDALLRELQQIEEQHPDLRTP 61
Query: 66 DSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELK 125
DS TQ VG E H M+SL N + +D+ F++RI EL + + + Y+AE K
Sbjct: 62 DSPTQRVGASPAERFAPAEHLAPMLSLGNARTADDLRDFDQRIRRELGI-EQVHYVAEPK 120
Query: 126 FDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVL 185
DG+A++L YE G L +A+TRGDG GE++T + I +PL L P LLEVR EV
Sbjct: 121 LDGLAISLVYEDGLLTRAATRGDGRTGEDVTAQVRTIGAVPLRLRGTGWPRLLEVRGEVY 180
Query: 186 IYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM 245
+ F L + G NPRNAAAG LRQL+P I ++ L F +G G + G N+
Sbjct: 181 LPLAGFEALKQRMLDNGQTPVKNPRNAAAGSLRQLDPTITASRPLAIFCYGFGAVEGGNL 240
Query: 246 PSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLS 305
S+ S+ L + GL I E + ++G I++ + + +R L YEIDGVV+K++ L+
Sbjct: 241 GSTQSDALAHLRAFGLRISPESTCVTGAEGCIQYQEAMAARRDGLDYEIDGVVFKVDDLT 300
Query: 306 TQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITR 365
Q++LGF +R P +A+A+K+ ++E T+++A+ Q+GRTG +TPVA L+PV + G+T++
Sbjct: 301 AQRRLGFRARDPIWAIAFKYPAREEQTRVRAVEFQVGRTGAVTPVARLEPVDVAGVTVSN 360
Query: 366 ATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKI 425
ATLHN E++RK++++GDTV+V R+G+VIP++ + SLRP D++ +P CP+C S +
Sbjct: 361 ATLHNIDEVHRKDVRVGDTVIVRRAGDVIPEVVGVVASLRPPDTEPVALPAHCPVCGSDV 420
Query: 426 IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDL 485
I E +ARCSG I C AQRK L+HF+SR+A++I GLG K+IE+L+ ++V T DL
Sbjct: 421 IRAEGEAVARCSGGLI-CAAQRKEALKHFASRRALDIDGLGDKLIEQLIEQDLVKTPADL 479
Query: 486 YKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN 545
+ +N + L L R+ K A N+L A+ +S+ TT +RFI+ALGIR VGET A LA++F
Sbjct: 480 FALNTEQLANLPRMGEKSATNLLTALDQSRETTLARFIHALGIREVGETMASVLASHFGT 539
Query: 546 LECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG---IYWLNNPN--- 599
LE + +A EE L+ I +G T + F Q +R +I+QL D ++W + P
Sbjct: 540 LESLMQADEEALVAIDGVGQTVAQHIRSFFAQDHNREVIAQLIDPSGARLHWPDPPRPHD 599
Query: 600 -----------------------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAI 630
+G KV + +S NT+Y+V G+ PG K KA
Sbjct: 600 NQEQPLTGRTFVLTGTLTRPRDYIKAELIARGAKVTSSVSSNTDYVVAGENPGSKATKAA 659
Query: 631 KLNIKILDEKNF 642
+L I ILDE
Sbjct: 660 QLGIPILDETQL 671
>gi|253988889|ref|YP_003040245.1| DNA ligase [Photorhabdus asymbiotica]
gi|253780339|emb|CAQ83500.1| DNA ligase [Photorhabdus asymbiotica]
Length = 672
Score = 546 bits (1408), Expect = e-152, Method: Compositional matrix adjust.
Identities = 277/665 (41%), Positives = 407/665 (61%), Gaps = 36/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ L+K L H Y++ D P ISD +YD+L+ ELK +E ++PEL+T DS TQ VG
Sbjct: 7 QIENLRKTLRHHEYLYHVMDAPEISDAEYDRLMQELKTLEGQHPELITSDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F +E + F+KR+ + LK T+++ ELK DG+AV+L YE
Sbjct: 67 LAAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKDTQDLVVCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT+N+ I+ +PL L + P +EVR EV + + F KLN+
Sbjct: 127 NGELVRAATRGDGTTGENITSNVRTINAVPLRLIGENIPARIEVRGEVFMPQNGFEKLNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L F +GVG L G +P+SH E L +
Sbjct: 187 EARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLAFLCYGVGVLEGGELPASHYERLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + + V + N++I+FY+ I +R L ++IDGVV K+N L Q+ LGF +RA
Sbjct: 247 KKWGLPVSDKVRVCTDSNQVIDFYRNIENQRSTLGFDIDGVVIKVNSLELQETLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T ++ I Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQMTIVRDIEFQVGRTGAITPVARLEPVQVSGVTVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV++ R+G+VIP++ + RP DS P CP+C + I IE +ARC
Sbjct: 367 LGLRIGDTVIIRRAGDVIPQVVGVVEDRRPQDSDEVIFPEYCPVCGADIEKIEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK L+HF SR+AM++ G+G+K+I++LV+ V T DL+++ L L
Sbjct: 427 TGGLV-CGAQRKEALRHFVSRRAMDVDGMGEKIIDQLVDKEYVETPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF +L + A EE
Sbjct: 486 DRMGPKSAQNVVDALEKAKKTTFARFLYALGIREVGEATAANLAAYFGDLNKLRAADEEA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRD-VGIYW----------LNNPNTK---- 601
L + +G K + F N+P ++ +I L D +GI W +++P
Sbjct: 546 LKEVQDVGEVVAKHVVHFFNEPHNQKVIDDLIDNIGINWEPIAVTKAEKIDSPFAGKTIV 605
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G KV +SK T+ ++ G+ G KL KA +LNI ++DE+
Sbjct: 606 LTGSLHQLSRDEAKDKLIALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELNIAVIDEEE 665
Query: 642 FVKIV 646
++++
Sbjct: 666 MIRLL 670
>gi|322513636|ref|ZP_08066733.1| NAD-dependent DNA ligase LigA [Actinobacillus ureae ATCC 25976]
gi|322120561|gb|EFX92462.1| NAD-dependent DNA ligase LigA [Actinobacillus ureae ATCC 25976]
Length = 681
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 279/681 (40%), Positives = 415/681 (60%), Gaps = 43/681 (6%)
Query: 2 SFHAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPE 61
A+ F++L L+++L + Y++ DNP++ D +YD+L+ ELK +E ++PE
Sbjct: 6 QMQAQADTTFAQLE----ALRQKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPE 61
Query: 62 LLTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN---I 118
+T DS TQ VG + V H M+SLDN FSDED+ F +R+ E +++N +
Sbjct: 62 WITADSPTQRVGAKPLDGFAQVTHEIPMLSLDNAFSDEDLDSFLRRM--ESYISENPLSL 119
Query: 119 EYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELL 178
+ E K DG+AV++ Y G L QA+TRGDG GE+IT+NI I IPL LN+ PP L
Sbjct: 120 AFCCEPKLDGLAVSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARL 179
Query: 179 EVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG 238
EVR EV + +K F +LN+ K F NPRNAAAG LRQL+PKI + + L A+G+G
Sbjct: 180 EVRGEVFMPQKGFEELNERALEKSEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIG 239
Query: 239 ELRGMN-MPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGV 297
+ +P++H E L W + IG+ + E +++G +L+ FY I KR L Y+IDG
Sbjct: 240 VYESDDELPATHFERLQWLKSIGIPVNNEIRLVTGHEQLLAFYADIQAKRPTLGYDIDGT 299
Query: 298 VYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVL 357
V K+N + Q++LGF SR+PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV
Sbjct: 300 VLKVNDIGLQEQLGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVF 359
Query: 358 IDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNI 417
+ G+T++ ATLHN EI R I IGDTV++ R+G+VIP+I ++ RP +++ + P
Sbjct: 360 VAGVTVSNATLHNGDEIERLGIVIGDTVIIRRAGDVIPQIVGVVMERRPENAEKIEFPTA 419
Query: 418 CPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNAN 477
CP+C S ++ +E +ARC+G C AQRK L+HF SRKAM+I G+G+K+IE+L++
Sbjct: 420 CPVCESAVVRVEGEAVARCTGGLF-CGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMDRE 478
Query: 478 IVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAK 537
+V T DL+K++ L+RLDR+ K A N L +I+K+K TT +RF++ALGIR VGE TA+
Sbjct: 479 LVHTPADLFKLDHTTLMRLDRMGKKSAQNALNSIEKAKNTTLARFLFALGIRDVGEATAQ 538
Query: 538 ELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--- 594
LAN+F NLE + AT EQL + +G ++F +P + ++ L G+YW
Sbjct: 539 NLANHFHNLEAIRMATFEQLQEVQDVGEVVANRIVRFWQEPHNVAVVEDLIAQGVYWQDV 598
Query: 595 -----LNNP------------------------NTKGGKVVNFISKNTNYLVKGQKPGKK 625
+NP + G KV +S T+YL+ G+K G K
Sbjct: 599 VQVEIADNPLKGKNVVLTGTLTQLTRDQAKALLQSFGCKVSGSVSSKTDYLIAGEKAGSK 658
Query: 626 LEKAIKLNIKILDEKNFVKIV 646
L KA +L +K+L E+ V ++
Sbjct: 659 LAKAQELGVKVLTEQELVDLM 679
>gi|407691633|ref|YP_006816422.1| NAD-dependent DNA ligase LigA [Actinobacillus suis H91-0380]
gi|407387690|gb|AFU18183.1| NAD-dependent DNA ligase LigA [Actinobacillus suis H91-0380]
Length = 681
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 279/681 (40%), Positives = 414/681 (60%), Gaps = 43/681 (6%)
Query: 2 SFHAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPE 61
A+ F++L L+++L + Y++ DNP++ D +YD+L+ ELK +E ++PE
Sbjct: 6 QMQAQADTTFAQLE----ALRQKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPE 61
Query: 62 LLTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN---I 118
+T DS TQ VG + V H M+SLDN FSDED+ F +R+ E +++N +
Sbjct: 62 WITADSPTQRVGAKPLDGFAQVTHEIPMLSLDNAFSDEDLDGFLRRM--ESYISENPLSL 119
Query: 119 EYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELL 178
+ E K DG+AV++ Y G L QA+TRGDG GE+IT+NI I IPL LN+ PP L
Sbjct: 120 SFCCEPKLDGLAVSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARL 179
Query: 179 EVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG 238
EVR EV + +K F +LN+ G K F NPRNAAAG LRQL+PKI + + L A+G+G
Sbjct: 180 EVRGEVFMPQKGFEELNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIG 239
Query: 239 ELRGMN-MPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGV 297
+ +P++H E L W + IG+ + E + +G +L+ FY I KR L Y+IDG
Sbjct: 240 VYESDDELPATHFERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGT 299
Query: 298 VYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVL 357
V K+N + Q++LGF SR+PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV
Sbjct: 300 VLKVNDIGLQEQLGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVF 359
Query: 358 IDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNI 417
+ G+T++ ATLHN EI R I IGDTV++ R+G+VIP+I ++ RP ++K + P
Sbjct: 360 VAGVTVSNATLHNGDEIERLGIVIGDTVIIRRAGDVIPQIVGVVMDRRPENAKKIEFPTA 419
Query: 418 CPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNAN 477
CP+C S ++ +E +ARC+G C AQRK L+HF SRKAM+I G+G+K+IE+L+
Sbjct: 420 CPVCESAVVRVEGEAVARCTGGLF-CGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMERE 478
Query: 478 IVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAK 537
+V T DL+K++ L+RLDR+ K A N L +I+++K TT +RF++ALGIR VGE TA+
Sbjct: 479 LVHTPADLFKLDHTTLMRLDRMGEKSAQNALNSIEQAKNTTLARFLFALGIRDVGEATAQ 538
Query: 538 ELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--- 594
LAN+F NLE + AT EQL + +G ++F +P + ++ L G++W
Sbjct: 539 NLANHFHNLEAIRAATFEQLQAVQDVGEVVANRIVRFWQEPHNVAVVEDLIAQGVHWQDV 598
Query: 595 -----LNNP------------------------NTKGGKVVNFISKNTNYLVKGQKPGKK 625
+NP + G KV +S T+YL+ G+K G K
Sbjct: 599 VQVEIADNPLKGKNVVLTGTLTQLTRDQAKALLQSFGCKVSGSVSSKTDYLIAGEKAGSK 658
Query: 626 LEKAIKLNIKILDEKNFVKIV 646
L KA +L +K+L E+ V ++
Sbjct: 659 LAKAQELGVKVLTEQELVDLM 679
>gi|421494550|ref|ZP_15941896.1| LIGA [Morganella morganii subsp. morganii KT]
gi|455740019|ref|YP_007506285.1| DNA ligase [Morganella morganii subsp. morganii KT]
gi|400191171|gb|EJO24321.1| LIGA [Morganella morganii subsp. morganii KT]
gi|455421582|gb|AGG31912.1| DNA ligase [Morganella morganii subsp. morganii KT]
Length = 673
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 273/664 (41%), Positives = 399/664 (60%), Gaps = 36/664 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ +L+ L H Y++ DNP + D +YD+L+ LK +E ++PEL+T DS TQ VG
Sbjct: 10 IEQLRATLRHHEYCYHVLDNPEVPDAEYDRLMQRLKALEAEHPELITPDSPTQRVGASPL 69
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
+ V H M+SLDN F +E + F+KR+ + LK T+++ + ELK DG+AV+L YE
Sbjct: 70 SAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKDTQDLTFCCELKLDGLAVSLLYEN 129
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L QA+TRGDG GENIT N+ I IPL L + P+ +E+R EV + ++ F +N+
Sbjct: 130 GSLVQAATRGDGTTGENITANVRTIRAIPLKLRGENIPQRIEIRGEVFMPQRGFEAMNEE 189
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
G K F NPRNAAAG LRQL+P + + L FF +GVG L G +P SH + L ++
Sbjct: 190 ARRTGGKVFANPRNAAAGSLRQLDPAVTAKRPLTFFCYGVGVLEGGTLPGSHYDRLQQFK 249
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
GL + +G +++FY K+ R L ++IDGVV K++ ++ Q+ LGF SRAP
Sbjct: 250 AWGLPVSDRVMRCTGSQAVLDFYHKVEESRPVLGFDIDGVVIKVDSIALQEALGFVSRAP 309
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A A+KF ++E +T ++ + Q+GRTG ITPVA L+PVL+ G+T++ ATLHN EI R
Sbjct: 310 RWATAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHNADEISRL 369
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
++IGDTVV+ R+G+VIP++ + S RP D++ + P CP+C S I +E +ARC+
Sbjct: 370 GLKIGDTVVIRRAGDVIPQVVGVVESERPADARDIEFPLSCPVCGSDIERVEGEAVARCT 429
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G I C AQRK L+HF SR+AM++ GLG K+I++LV+A V T DL+++ L LD
Sbjct: 430 GGLI-CGAQRKEALKHFVSRRAMDVDGLGDKIIDQLVDAEYVKTPADLWRLTPGKLTGLD 488
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+ K A + A+ SK TTF+RF+YALGIR VGE TA LA +F L+ + +A E L
Sbjct: 489 RMGPKSAQKLTDALAASKQTTFARFLYALGIREVGEATAANLAEHFGTLDALQQADTEAL 548
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQLR-DVGIYW----------LNNP-------- 598
+P +G K + F + +R +I+ L DVGI W L+NP
Sbjct: 549 KAVPDVGEVVAKHVVNFFREQHNREVITDLTGDVGISWPDVVAVDASVLDNPFAGKVVVL 608
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ +V G+ G KL KA +L IK+++E F
Sbjct: 609 TGSLQILTRDEAKDRLTALGAKVTGSVSKKTDLVVAGEAAGSKLAKAEELGIKVINEDEF 668
Query: 643 VKIV 646
+ ++
Sbjct: 669 IALL 672
>gi|345429372|ref|YP_004822490.1| DNA ligase, NAD(+)-dependent [Haemophilus parainfluenzae T3T1]
gi|301155433|emb|CBW14899.1| DNA ligase, NAD(+)-dependent [Haemophilus parainfluenzae T3T1]
Length = 667
Score = 546 bits (1406), Expect = e-152, Method: Compositional matrix adjust.
Identities = 275/663 (41%), Positives = 403/663 (60%), Gaps = 34/663 (5%)
Query: 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG 73
L ++ L+++L R+ Y++ DNP I D +YD+L +LK +E +PEL+T DS TQ VG
Sbjct: 3 LQQQIDTLRQDLRRYEYEYHVLDNPTIPDAEYDRLFHQLKALEAAHPELITADSPTQRVG 62
Query: 74 LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVN 132
+ H M+SLDN FSDE+ F KRI + L +L + + E K DG+AV+
Sbjct: 63 AKPLSGFAQIRHEIPMLSLDNAFSDEEFYAFVKRIEDRLIRLPDPLTFCCEPKLDGLAVS 122
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
+ Y G L QA+TRGDG GE+IT NI I IPL L + PP LEVR EV + + F
Sbjct: 123 ILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLQLLMDNPPARLEVRGEVFMPHEGFE 182
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
+LN+ G K F NPRNAAAG LRQL+PKI + L A+G+G G+++P++H +
Sbjct: 183 RLNQQALEKGEKTFANPRNAAAGSLRQLDPKITSKRPLVLNAYGIGIAEGVDLPNTHYDR 242
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
L W + IG+ + E + +G +++++FY+ I KR +L Y+IDG V KIN ++ Q+KLGF
Sbjct: 243 LQWLKSIGIPVNPEIRLCNGTDEVLDFYRDIQNKRSSLGYDIDGTVLKINDIALQEKLGF 302
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
S+APR+A+AYKF ++E LT++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 303 ISKAPRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGD 362
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
EI R +I IGD VV+ R+G+VIP+I + RP D++ P CP+C+S I+ IE
Sbjct: 363 EIERLDIAIGDMVVIRRAGDVIPQIIGVLHDRRPADARPIVFPETCPVCDSAIVRIEGEA 422
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++
Sbjct: 423 VARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLDLTA 481
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
L RL+R+ K A N L +++K+K TT +RF++ALGIR VGE TA LAN+FK LE + A
Sbjct: 482 LTRLERMGTKSAENALASLEKAKNTTLARFVFALGIREVGEATALNLANHFKTLEALQNA 541
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------ 594
E L +P +G + F ++P + +++ L G++W
Sbjct: 542 DLEALQQVPDVGEVVANRILAFWHEPHNVAVVNDLIAQGVHWETVEAKEVIENRFKGKTV 601
Query: 595 -LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
L T+ G KV +S T++++ G G KL KA +L + +L E+
Sbjct: 602 VLTGTLTQMGRNEAKALLQDMGAKVSGSVSAKTDFVIAGDAAGSKLTKAQELGVTVLTEE 661
Query: 641 NFV 643
F+
Sbjct: 662 EFL 664
>gi|89075460|ref|ZP_01161871.1| DNA ligase [Photobacterium sp. SKA34]
gi|89048732|gb|EAR54303.1| DNA ligase [Photobacterium sp. SKA34]
Length = 670
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 276/652 (42%), Positives = 396/652 (60%), Gaps = 34/652 (5%)
Query: 28 HNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTF 87
H YY+ DNP I D +YD+++ +L KIE ++PE +T DS +Q VG E V H
Sbjct: 19 HGHRYYVEDNPEIPDAEYDRMMQQLLKIEAEHPEWVTVDSPSQRVGGAALEGFTQVKHEI 78
Query: 88 KMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRG 147
M+SLDN F+D+D+ F KR+ + L+ Y E K DG+AV+L YE G L QA+TRG
Sbjct: 79 AMLSLDNAFNDDDLRAFQKRLQDRLRSGATFSYCCEPKLDGLAVSLMYEKGVLVQAATRG 138
Query: 148 DGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFT 207
DG GENIT N+ I IPL L PE LEVR EV + KK F +LN G K F
Sbjct: 139 DGATGENITHNVRTIRAIPLKLQGDDWPERLEVRGEVFMPKKGFEELNAKALKKGDKAFA 198
Query: 208 NPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEY 267
NPRNAAAG LRQL+PKI + L F+A+ VG + G + ++ E L + GL +C E
Sbjct: 199 NPRNAAAGSLRQLDPKITATRPLSFYAYAVGVVDGRELANTQYERLCQLKAWGLPMCPEI 258
Query: 268 SVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLS 327
+ + ++I +++ I KR +L YEIDGVV K++ + TQ++LGF +RAPR+A+AYKF +
Sbjct: 259 RKVDSIEEVIAYHQNIGEKRQSLGYEIDGVVIKVDDVDTQQQLGFVARAPRWAIAYKFPA 318
Query: 328 KEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVV 387
+E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN E+ R + IGDTV++
Sbjct: 319 QEEMTTLNNVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEVARLGVMIGDTVII 378
Query: 388 HRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQR 447
R+G+VIP+I S + S RP +++ P CP+C SK+ IE +ARC+G C AQR
Sbjct: 379 RRAGDVIPQIASVVESRRPANAQAIVFPTECPVCQSKVERIEGEAVARCTGGLF-CQAQR 437
Query: 448 KAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNI 507
K L+HF SRKA+++ G G+K+IE+LV+ +V T DL+K + + L+R+ K A +
Sbjct: 438 KEALKHFVSRKALDVDGCGEKVIEQLVDREMVTTPADLFKFSAGEVTVLERMGPKSAQKL 497
Query: 508 LLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTT 567
+ A+ SKLTT RFIY+LGIR VGE TA LANYF+ LE + +AT++QL+ +P +G
Sbjct: 498 VDALNASKLTTLPRFIYSLGIREVGEATAANLANYFETLESISQATKDQLIEVPDVGGIV 557
Query: 568 VKAFIKFINQPLHRLLISQLRDVGIYW---------------------------LNNPNT 600
F + + +++++L++VGI+W L +
Sbjct: 558 AAHIFNFFREEHNMVVVNELQEVGIHWPEIEKIDEDVELPLDGKVVVLTGSLSQLTRSDA 617
Query: 601 K------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
K G KV +SK T+ LV G+ G KL KA +L I+I DE+ V ++
Sbjct: 618 KAALQKLGAKVTGSVSKKTDLLVAGEAAGSKLTKAQELGIEIWDEQKLVDLM 669
>gi|451813062|ref|YP_007449515.1| DNA ligase (NAD+) [Candidatus Kinetoplastibacterium blastocrithidii
TCC012E]
gi|451779031|gb|AGF49911.1| DNA ligase (NAD+) [Candidatus Kinetoplastibacterium blastocrithidii
TCC012E]
Length = 687
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 288/677 (42%), Positives = 435/677 (64%), Gaps = 49/677 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ L K + HN+ YY YDNPIISD++YD L+ EL +E YP L+T+ S TQ VG
Sbjct: 11 KIEHLCKTIEEHNVHYYCYDNPIISDSEYDVLMNELLNLESMYPNLITEYSPTQRVGSTP 70
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL----KLTKNIEYIAELKFDGIAVN 132
E+ + H+ M+SL N F+ EDV +FNKR+ + L L ++EY +LK DG+A+N
Sbjct: 71 LESFNKIEHSIPMLSLSNAFTSEDVELFNKRVISSLLKKIDLRDDVEYFCDLKLDGLAIN 130
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
LRYE G L STRGDG IGE++T NI +I IPL L I P++L+VR EVL+Y DF
Sbjct: 131 LRYENGILVHGSTRGDGYIGEDVTANIRVIRSIPLRL-IGDFPKILDVRGEVLMYNVDFE 189
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL-RGMNMPS---- 247
LN Y G + F NPRNAAAG LR L+ K++ + L FFA+G G++ + P+
Sbjct: 190 NLNNYNIRNGGRVFVNPRNAAAGSLRNLDSKVSSMRKLRFFAYGWGKIIDDQSAPNKLFK 249
Query: 248 ----SHSELLNWYQKIGLSICGEY-SVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKIN 302
+H +L+W+ +GL + Y V+SG++ ++++Y I R +LPY IDGVVYK+N
Sbjct: 250 CQYKTHDSVLDWFISLGLPVNKRYHKVVSGISGILDYYNSIVNDRDSLPYGIDGVVYKVN 309
Query: 303 CLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGIT 362
L Q+ LG++SRAP+FALA+KFL++EA+T+I I++Q+GRTG+ITPVA LKP+ + G+T
Sbjct: 310 SLDRQEMLGYSSRAPKFALAHKFLAEEAVTQIIGIDVQVGRTGVITPVARLKPIFVGGVT 369
Query: 363 ITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICN 422
I+ ATLHNE EI RK+I+IGD VV+ R+G+VIP++ I+ LRP ++ F + CPIC+
Sbjct: 370 ISNATLHNEHEIRRKDIRIGDFVVIRRAGDVIPEVVYPIIDLRPVNTTPFHMVVSCPICS 429
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
S I I++ + RC+G + C AQ K GL+H SRKA NI+G G+K+I+KLV+ + +
Sbjct: 430 SSIKRIDNEIAYRCTGG-LYCSAQLKQGLKHALSRKAFNIVGFGEKLIDKLVDLGYLKSL 488
Query: 483 VDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY 542
VD+++++ +L++++ V+ K A N+L AI ++ + S FI+A+GIRHVGE TA ++AN
Sbjct: 489 VDVFRLSCSDLMKVELVAEKSATNLLRAINNARKPSLSNFIFAMGIRHVGEATAIDIANN 548
Query: 543 FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK- 601
F LE + +A+ + LL++ +GS T ++ F ++ + +I+ L+ +G+Y L++ K
Sbjct: 549 FNTLESIIQASIDDLLSVKDVGSKTAESIRLFFSEEHNIGIINSLKSIGVYPLSDEYYKS 608
Query: 602 --------------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKA 629
GG+V + ISK +YL+ G+ GKKL+ A
Sbjct: 609 NNLKLLEGKLFAITGRLPDYSREDIVKHIEDNGGRVTSNISKKNHYLIAGESSGKKLDFA 668
Query: 630 IKLNIKILDEKNFVKIV 646
I IK++D+K F+K++
Sbjct: 669 IDNGIKVIDQKAFMKLI 685
>gi|387127762|ref|YP_006296367.1| DNA ligase [Methylophaga sp. JAM1]
gi|386274824|gb|AFI84722.1| DNA ligase [Methylophaga sp. JAM1]
Length = 670
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 265/665 (39%), Positives = 411/665 (61%), Gaps = 32/665 (4%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
++S R +L+ ++R+N YY D+P ++D +YD+L ELKK+E YPEL+T DS TQ V
Sbjct: 6 EISERAAQLRDLINRYNFLYYSADDPEVTDAEYDRLFAELKKLEADYPELITADSPTQRV 65
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
G + V H M+SLDN F + ++ FN+R+ + L I Y AE K DG+A++
Sbjct: 66 GSAPLDKFTQVTHAMPMLSLDNVFDEAELTAFNQRVLDRLNTDAVITYAAEPKLDGLAIS 125
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
+RYE G L QA+TRGDG +GE++T N+ I +PL L+ K P+++E+R E+ + K F
Sbjct: 126 IRYENGLLVQAATRGDGAVGEDVTENVRTIRNVPLKLHGKNVPQVVEIRGEIYMPKAGFE 185
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
KLN+ R K F NPRNAAAG LRQL+ + ++ L F +G+GEL+GM PSSH+E
Sbjct: 186 KLNQQRLANNEKLFVNPRNAAAGSLRQLDSSVTASRPLALFCYGLGELQGMERPSSHTEA 245
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
+ + G ++ + L GV++ +E+ ++ +R +L Y+IDGVV+K++ Q++LGF
Sbjct: 246 MQIISEWGGAVSPDTKQLKGVDECLEYLHQLGERRASLSYDIDGVVFKVDDSRLQERLGF 305
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
SRAPR+A+AYKF ++E T++ I +Q+GRTG +TPVA L+PV + G+T++ ATLHNE
Sbjct: 306 VSRAPRWAIAYKFPAQEESTQVVDIEVQVGRTGALTPVARLQPVFVGGVTVSNATLHNED 365
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
E+ RK+++IGDTV++ R+G+VIP++ + RP ++ F +P CP+C +++ +E
Sbjct: 366 EVRRKDVRIGDTVIIRRAGDVIPEVVQVVKDKRPANATEFVMPTHCPVCGAEVERVEGEA 425
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
+ARCSG C AQRK ++HF+SRKA++I GLG K++E+LV+A ++ DL+ +N +
Sbjct: 426 VARCSGGLF-CGAQRKEAIKHFASRKALDIDGLGDKLVEQLVDAELIKDPADLFYLNKEQ 484
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LDR+ K A N++ A++++K T F+RF+YALGIR VGE TA+ LA +F L+ + A
Sbjct: 485 FSALDRMGEKSAENLVNALEQAKNTRFARFLYALGIREVGEATARSLALHFVELDKLTVA 544
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------ 594
E++L+ I +G F Q + +I +L D G+ W
Sbjct: 545 KEDELIEIEDVGPVVAHHIYTFFQQTHNLDVIQRLLDAGVNWPEEKPVYADSALAGKTIV 604
Query: 595 -------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
L+ K G KV +S T+Y+V G+ G KL KA L I ++DE
Sbjct: 605 LTGTLENLSRSEAKEKLLALGAKVAGSVSAKTDYVVAGRDAGSKLNKAQSLGIDVVDEAT 664
Query: 642 FVKIV 646
++ +
Sbjct: 665 LIQWI 669
>gi|387121512|ref|YP_006287395.1| NAD-dependent DNA ligase [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|415754440|ref|ZP_11480656.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
D17P-3]
gi|416035194|ref|ZP_11573478.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
serotype a str. H5P1]
gi|416066319|ref|ZP_11581986.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
serotype f str. D18P1]
gi|429733427|ref|ZP_19267647.1| DNA ligase [Aggregatibacter actinomycetemcomitans Y4]
gi|444333521|ref|ZP_21149303.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
serotype a str. A160]
gi|347997493|gb|EGY38484.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
serotype a str. H5P1]
gi|348002915|gb|EGY43578.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
serotype f str. D18P1]
gi|348656223|gb|EGY71620.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
D17P-3]
gi|385876004|gb|AFI87563.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|429154904|gb|EKX97613.1| DNA ligase [Aggregatibacter actinomycetemcomitans Y4]
gi|443551604|gb|ELT59397.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
serotype a str. A160]
Length = 671
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 276/665 (41%), Positives = 397/665 (59%), Gaps = 34/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+K L H Y++ D+P I D++YD+L +LK +E+++PEL+T DS TQ VG
Sbjct: 8 QIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELVTADSPTQRVGARP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-KNIEYIAELKFDGIAVNLRY 135
+ H M+SLDN FS+E+ F KRI + L L + + + E K DG+AV++ Y
Sbjct: 68 LSEFAQIRHEIPMLSLDNAFSNEEFFAFVKRIQDRLALVPEPLTFCCEPKLDGLAVSILY 127
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
G L QA+TRGDG GE+IT NI I IPL L PP LEVR EV + F +LN
Sbjct: 128 VNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPHAGFERLN 187
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
+ G K F NPRNAAAG LRQL+PKI + L A+ +G G+ +P +H E L W
Sbjct: 188 ERALQHGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYSIGIAEGVELPPTHFERLQW 247
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ +G+ + E + G+ ++ FY+ I KR +L Y+IDG V KIN ++ Q++LGF S+
Sbjct: 248 LKSVGIPVNNEIQLCDGIENVLNFYRTIMAKRSSLGYDIDGAVLKINDIALQQRLGFISK 307
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A+AYKF ++E LT++ + Q+GRTG ITPVA LKPV + G+T++ ATLHN EI
Sbjct: 308 APRWAIAYKFPAQEELTELNEVEFQVGRTGAITPVAKLKPVFVAGVTVSNATLHNGDEIE 367
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
R NI IGDTV++ R+G+VIP+I + RP D++ P CP+C S I+ IE +AR
Sbjct: 368 RLNIAIGDTVIIRRAGDVIPQIIGVVHDRRPADARQIVFPTECPVCGSLIVRIEGEAVAR 427
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++ L R
Sbjct: 428 CTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLDLTTLSR 486
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L+R+ K A N L +++K+K TT +RFI+ALGIR VGE TA LAN+FK LE + A E
Sbjct: 487 LERMGPKSAENALTSLEKAKNTTLARFIFALGIRDVGEATALNLANHFKTLEALQNADLE 546
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--------NP--------- 598
QL +P +G F ++ + ++ L G++W NP
Sbjct: 547 QLQQVPDVGEVVANRIFVFWHEAHNVAVVEDLIAQGVHWETVDVQEVKENPFKGKTVVLT 606
Query: 599 ---------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +S T+Y++ G+ G KL KA +L +++L E+ F+
Sbjct: 607 GTLSQMGRNDAKALLQQLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFL 666
Query: 644 KIVKG 648
+ G
Sbjct: 667 GWING 671
>gi|373466843|ref|ZP_09558152.1| DNA ligase [Haemophilus sp. oral taxon 851 str. F0397]
gi|371759607|gb|EHO48319.1| DNA ligase [Haemophilus sp. oral taxon 851 str. F0397]
Length = 672
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 284/669 (42%), Positives = 404/669 (60%), Gaps = 34/669 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++ L+K L ++ Y++ DNPI+ D++YD+L +LK +E ++PE LT DS TQ
Sbjct: 1 MTNIQTQIDNLRKTLRQYEYEYHVLDNPIVPDSEYDRLFHQLKALELEHPEFLTSDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGI 129
VG + H M+SLDN FSDE+ F KRI + L L K + + E K DG+
Sbjct: 61 RVGAKPLSGFSQIRHEIPMLSLDNAFSDEEFNAFVKRIEDRLIVLPKPLTFCCEPKLDGL 120
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G L QA+TRGDG GE+IT NI I IPL L PP LEVR EV +
Sbjct: 121 AVSILYVNGILTQAATRGDGTTGEDITANIRTIRNIPLQLLTDNPPARLEVRGEVFMPHA 180
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LN+Y G K F NPRNAAAG LRQL+P I + L A+G+G G+ +PS+H
Sbjct: 181 GFERLNEYALEHGEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVELPSTH 240
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
L W + IG+ + E + +G N++++FY+ I KR +L Y+IDG V KIN ++ Q +
Sbjct: 241 YSRLQWLKSIGIPVNPEIRLCNGTNEVLDFYRDIQNKRSSLGYDIDGTVLKINDIALQNE 300
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF S+APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 301 LGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 360
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R NI IGDTVV+ R+G+VIP+I S + RP+++K P CP+C+S+II IE
Sbjct: 361 NGDEIERLNIAIGDTVVIRRAGDVIPQIISVLHERRPDNAKPIIFPTNCPVCDSQIIRIE 420
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T VDL+K++
Sbjct: 421 GEAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPVDLFKLD 479
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L RL+R+ K A N L +++K+K TT +RFI+ALGIR VGE TA LAN+FK L+ +
Sbjct: 480 LTTLTRLERMGAKSAENALNSLEKAKSTTLARFIFALGIREVGEATALNLANHFKTLDAL 539
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
A EQL +P +G F + + ++ L G++W
Sbjct: 540 KAADLEQLQQVPDVGEVVANRIFVFWREAHNVAVVDDLIAQGVHWETVEVKEASENLFKD 599
Query: 595 ----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L T+ G KV +S T++++ G G KL KA +LNI +L
Sbjct: 600 KTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVL 659
Query: 638 DEKNFVKIV 646
E+ F++ V
Sbjct: 660 TEEEFLEQV 668
>gi|121604718|ref|YP_982047.1| DNA ligase [Polaromonas naphthalenivorans CJ2]
gi|166216226|sp|A1VN98.1|DNLJ_POLNA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|120593687|gb|ABM37126.1| DNA ligase, NAD-dependent [Polaromonas naphthalenivorans CJ2]
Length = 707
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 280/683 (40%), Positives = 405/683 (59%), Gaps = 49/683 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ L+ EL H YY+ D P I D +YD+L EL+ +E +PELLT DS TQ VG
Sbjct: 23 RIAALRAELDLHAHRYYVLDEPSIPDAEYDRLFKELQALEAAHPELLTPDSPTQRVGGKP 82
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVII--FNKRITNELKLTKN---IEYIAELKFDGIAV 131
V H M+S+ E F+ R+ EL L ++ +EY+AELKFDG+A+
Sbjct: 83 LGQFASVRHRIPMLSIRTETDTEATGARNFDTRVRKELGLKESDPPVEYVAELKFDGLAM 142
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+LRYE G L QA+TRGDG +GE++T NI I +IPL L PP ++EVR EV + + +F
Sbjct: 143 SLRYENGVLVQAATRGDGEVGEDVTQNIRTIRQIPLRLPADAPP-VMEVRGEVYMRRDEF 201
Query: 192 IKLNKYRYHL------GLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL----R 241
LN+ + G K F NPRNAAAG +RQL+P + L FFA+GVGE+
Sbjct: 202 EALNERQREKIAKGAKGEKTFVNPRNAAAGGVRQLDPAFAAERRLSFFAYGVGEITPPEE 261
Query: 242 GMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKI 301
G + +H ELL + + + + G +LI F++ I +R LPY+IDGVVYK+
Sbjct: 262 GGPVFETHFELLQTLKSWCFPVAAQTRLAYGAPELIAFHEAIGRQRDQLPYDIDGVVYKV 321
Query: 302 NCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGI 361
N L+ Q+K+GF SR PR+A+A+K+ ++E LT + AI+IQ+GRTG +TPVA L PV + G+
Sbjct: 322 NSLALQRKMGFVSREPRWAVAHKYPAQEQLTTVLAIDIQVGRTGKLTPVAKLAPVFVGGV 381
Query: 362 TITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPIC 421
T+T ATLHNE E RK++++GDTV+V R+G+VIP++ S +L R D+ F +P CP+C
Sbjct: 382 TVTNATLHNEDEARRKDVRVGDTVIVRRAGDVIPEVVSVLLDKRVQDAPQFSMPRQCPVC 441
Query: 422 NSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVT 481
S + E RC+G C AQRK + H++ ++A+ I GLG K++E+LV+ ++ T
Sbjct: 442 GSDAVREEGEADYRCTGGLF-CAAQRKEAILHYAHKRAVEIEGLGDKLVEQLVDTGVIRT 500
Query: 482 AVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELAN 541
DLY++ F +L LDR++ K A+N++ A++KSK TT RF++ LGIRHVGE TAK LA
Sbjct: 501 LPDLYRLGFTSLASLDRMAEKSASNLVAALEKSKQTTLPRFVFGLGIRHVGEATAKALAR 560
Query: 542 YFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------- 594
+F L+ + A+EEQLL + +G K+ F QP +R ++ QLR G+ W
Sbjct: 561 HFGQLDSIMDASEEQLLEVADVGPIVAKSIRTFFEQPHNREVVEQLRACGVTWEEGAPAA 620
Query: 595 -------------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKA 629
L+ + K GGKV +SK T+Y+V G G KL KA
Sbjct: 621 VAPKPLSGKTFVITGTLPGLSRDDAKDRIEAAGGKVAGSVSKKTDYVVAGLDAGSKLVKA 680
Query: 630 IKLNIKILDEKNFVKIVKGFSTE 652
L + ++DE + ++ E
Sbjct: 681 EALGVAVIDEATLLALLDSPPDE 703
>gi|365091147|ref|ZP_09328654.1| DNA ligase [Acidovorax sp. NO-1]
gi|363416265|gb|EHL23385.1| DNA ligase [Acidovorax sp. NO-1]
Length = 703
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 269/689 (39%), Positives = 409/689 (59%), Gaps = 43/689 (6%)
Query: 3 FHAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPEL 62
F A ++ + + ++ L+ +L++ YY+ D P + D +YD++ EL+ +E +P+L
Sbjct: 8 FSAPAPVDIAPPAIKIKALRDQLNQWAHQYYVLDEPSVPDAEYDRVFRELQALEAVHPDL 67
Query: 63 LTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDE--DVIIFNKRITNELKLTKN--- 117
+T DS TQ V E V HT M+S+ E F+ R+ EL L+
Sbjct: 68 ITPDSPTQRVIGAVMEGLAPVRHTVPMLSIHTETDTEATGAQAFDARVRRELGLSDADPA 127
Query: 118 IEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPEL 177
IEY+AE KFDG+A++LRYE G L QA+TRGDG +GE++T NI I +IPL L PP L
Sbjct: 128 IEYVAEPKFDGLAMSLRYENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLPDGVPP-L 186
Query: 178 LEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGV 237
LEVR EV + + DF LN+ + G K F NPRNAAAG +RQL+ I + L FFA+G+
Sbjct: 187 LEVRGEVYMRRADFDALNERQREQGGKTFVNPRNAAAGAVRQLDSGITAQRPLSFFAYGL 246
Query: 238 GELR--GMNMP--SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYE 293
G + G P +H E+L + G + + + G +L+ F++++ R LPY+
Sbjct: 247 GAITPPGDGGPVFRTHYEMLQTLKSWGFPVAAQVQIAVGATELVAFHQQVGASRDALPYD 306
Query: 294 IDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALL 353
IDGVVYK+N L Q+ LGF +R PR+A+A+K+ ++E TKI+ I++Q+GRTG ITPVA L
Sbjct: 307 IDGVVYKVNSLQLQRDLGFKTREPRWAVAHKYPAQEMATKIEGIDVQVGRTGKITPVARL 366
Query: 354 KPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFK 413
PV + G+T+T ATLHN EI +K +++GDTV+V R+G+VIP++ + R F+
Sbjct: 367 APVFVGGVTVTNATLHNLFEIRKKGVRVGDTVIVRRAGDVIPEVVGVMPGKRTGYVPNFR 426
Query: 414 IPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKL 473
+P CP+C S ++ + RC+G C AQRK + HF++R+AM+I GLG K++++L
Sbjct: 427 MPTACPVCGSDVVREKGEANHRCTGGLF-CAAQRKEAILHFAARRAMDIEGLGDKLVDQL 485
Query: 474 VNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGE 533
V+AN++ T DLY++ +L+ L+R++ K A N+L A++KSK TT RF++ LG+RHVGE
Sbjct: 486 VDANVIRTLPDLYRLGLTSLIALERMAEKSAQNVLAALEKSKQTTLPRFLFGLGLRHVGE 545
Query: 534 TTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIY 593
TAK+LA +F L+ + A+ EQLL + +G ++ F QP +R ++ QLR G+
Sbjct: 546 ATAKDLARHFGTLDAIMDASVEQLLEVNDVGPVVAQSLHTFFQQPHNREVVEQLRACGVT 605
Query: 594 WLNNP--------------------------------NTKGGKVVNFISKNTNYLVKGQK 621
W P G KV +SK T+Y+V G++
Sbjct: 606 WPEGPVAERAPQILAGKTVVLTGTLPTLSRDAAKDMLEAAGAKVAGSVSKKTSYVVAGEE 665
Query: 622 PGKKLEKAIKLNIKILDEKNFVKIVKGFS 650
G KL KA +L + +LDE + ++ G +
Sbjct: 666 AGSKLAKAQELGVPVLDEAGMLALLAGHA 694
>gi|323499974|ref|ZP_08104932.1| NAD-dependent DNA ligase LigA [Vibrio sinaloensis DSM 21326]
gi|323314991|gb|EGA68044.1| NAD-dependent DNA ligase LigA [Vibrio sinaloensis DSM 21326]
Length = 669
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 275/663 (41%), Positives = 408/663 (61%), Gaps = 34/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L++ LH H + YY+ D+P I D +YD+L+ EL ++E ++P+L++ DS +Q VG
Sbjct: 8 KLNQLRETLHYHGVKYYVEDSPEIPDAEYDRLMRELMELESQHPDLMSLDSPSQRVGGAA 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V+H M+SLDN F D ++ FNKR+ + + K + E K DG+AV+L YE
Sbjct: 68 LDGFGSVNHEIPMLSLDNAFDDAELESFNKRMADRIPSAKFDVFCCEPKLDGLAVSLLYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I IPL L + PE +EVR EV + K F KLN+
Sbjct: 128 NGVLVQAATRGDGTTGENITENVRTIKAIPLKLQGQGWPERIEVRGEVFMPKAGFDKLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I + L F+A+ VG ++G + SSH E
Sbjct: 188 QALKKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVQGATLSSSHYERFLQL 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL +C E +SG++++ +Y+ I +R LPYEIDGVV K++ ++ Q++LGF +RA
Sbjct: 248 KGWGLPMCPETKRVSGLDEVKAYYQDILQRREALPYEIDGVVIKVDDIALQEQLGFVARA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 308 PRWAIAYKFPAQEELTTLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIER 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++ IGDTVV+ R+G+VIP+I S ++ RP+ ++ P +CP+C S++ IE +ARC
Sbjct: 368 LSVMIGDTVVIRRAGDVIPQIVSVVVDRRPDSAREIVFPALCPVCQSQVERIEGEAVARC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG + C AQRK L+HF SRKA+++ GLG+K+IE+LV+ +V T DL+K++ + L
Sbjct: 428 SGGLV-CQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDREMVETPADLFKLSAGVITVL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A+ +SK TT RF+Y+LGIR VGE TA LA +FK+L+ + KAT E+
Sbjct: 487 DRMGPKSAQNVVDALNQSKQTTLPRFLYSLGIREVGEATAANLAQHFKSLQAVTKATHEE 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L+ + IG F Q ++ +I QL + GI W
Sbjct: 547 LIAVSDIGEIVASHITAFFAQESNQQVIGQLLEQGINWPEIEERDESTPQPLAGKTVVLT 606
Query: 595 -----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
L+ + K G KV +SK T+ L G+ G KL KA L ++I E++ +
Sbjct: 607 GSLSQLSRSDAKAALQDLGAKVTGSVSKKTDILFAGENAGSKLAKAQDLGVEIRTEQDLI 666
Query: 644 KIV 646
++
Sbjct: 667 DLI 669
>gi|90579891|ref|ZP_01235699.1| DNA ligase [Photobacterium angustum S14]
gi|90438776|gb|EAS63959.1| DNA ligase [Photobacterium angustum S14]
Length = 670
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 276/652 (42%), Positives = 394/652 (60%), Gaps = 34/652 (5%)
Query: 28 HNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTF 87
H YY+ DNP I D +YD+++ +L KIE +PE +T DS +Q VG E V H
Sbjct: 19 HGHRYYVEDNPEIPDAEYDRMMQQLIKIEADHPEWITVDSPSQRVGGAALEGFTQVKHEI 78
Query: 88 KMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRG 147
M+SLDN F+D+D+ F KR+ + L+ + Y E K DG+AV+L YE G L QA+TRG
Sbjct: 79 AMLSLDNAFNDDDLRAFQKRLQDRLRSGATLSYCCEPKLDGLAVSLMYENGVLVQAATRG 138
Query: 148 DGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFT 207
DG GENIT N+ I IPL L PE LEVR EV + KK F LN G K F
Sbjct: 139 DGATGENITHNVRTIRAIPLKLQGDDWPERLEVRGEVFMPKKGFEALNAKALKKGDKAFA 198
Query: 208 NPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEY 267
NPRNAAAG LRQL+PKI + L F+A+ VG + G + ++ E L + GL +C E
Sbjct: 199 NPRNAAAGSLRQLDPKITATRPLSFYAYAVGVVDGRELANTQYERLCQLKAWGLPMCPEI 258
Query: 268 SVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLS 327
+ + +I +++ I KR +L YEIDGVV K++ + TQ++LGF +RAPR+A+AYKF +
Sbjct: 259 RKVDSIEDVISYHQSIGEKRQSLGYEIDGVVIKVDDVDTQQQLGFVARAPRWAIAYKFPA 318
Query: 328 KEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVV 387
+E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN E+ R + IGDTV++
Sbjct: 319 QEEMTILNNVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEVARLGVMIGDTVII 378
Query: 388 HRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQR 447
R+G+VIP+I S + S RP +++ P CP+C SK+ IE +ARC+G C AQR
Sbjct: 379 RRAGDVIPQIASVVESRRPENAQAIVFPTECPVCQSKVERIEGEAVARCTGGLF-CQAQR 437
Query: 448 KAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNI 507
K L+HF SRKA+++ G G+K+IE+LV+ +V T DL+K + + L+R+ K A +
Sbjct: 438 KEALKHFVSRKALDVDGCGEKVIEQLVDREMVTTPADLFKFSAGEVTVLERMGPKSAQKL 497
Query: 508 LLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTT 567
+ A+ SKLTT RFI++LGIR VGE TA LANYF+ LE + +AT+EQL+ +P +G
Sbjct: 498 VDALNASKLTTLPRFIHSLGIREVGEATAANLANYFETLESISQATKEQLIEVPDVGDIV 557
Query: 568 VKAFIKFINQPLHRLLISQLRDVGIYW---------------------------LNNPNT 600
F + + +++++L++VGI+W L +
Sbjct: 558 AAHIFNFFREEHNMVVVNELQEVGIHWPEIEKRDEDVELPLDGKVVVLTGSLSQLTRSDA 617
Query: 601 K------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
K G KV +SK T+ LV G+ G KL KA +L I+I DE+ V ++
Sbjct: 618 KAALQKLGAKVTGSVSKKTDLLVAGEAAGSKLTKAQELGIEIWDEQKLVDLM 669
>gi|416043822|ref|ZP_11574783.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
serotype d str. I63B]
gi|347996814|gb|EGY37866.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
serotype d str. I63B]
Length = 671
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 276/665 (41%), Positives = 397/665 (59%), Gaps = 34/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+K L H Y++ D+P I D++YD+L +LK +E+++PEL+T DS TQ VG
Sbjct: 8 QIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELVTADSPTQRVGARP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-KNIEYIAELKFDGIAVNLRY 135
+ H M+SLDN FS+E+ F KRI + L L + + + E K DG+AV++ Y
Sbjct: 68 LSEFAQIRHEIPMLSLDNAFSNEEFFAFVKRIQDRLALVPEPLTFCCEPKLDGLAVSILY 127
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
G L QA+TRGDG GE+IT NI I IPL L PP LEVR EV + F +LN
Sbjct: 128 VNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPHAGFERLN 187
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
+ G K F NPRNAAAG LRQL+PKI + L A+ +G G+ +P +H E L W
Sbjct: 188 ERALQHGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYSIGIAEGVELPPTHFERLQW 247
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ +G+ + E + G+ ++ FY+ I KR +L Y+IDG V KIN ++ Q++LGF S+
Sbjct: 248 LKSVGIPVNNEIQLCDGIENVLNFYRTIMAKRSSLGYDIDGAVLKINDIALQQRLGFISK 307
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A+AYKF ++E LT++ + Q+GRTG ITPVA LKPV + G+T++ ATLHN EI
Sbjct: 308 APRWAIAYKFPAQEELTELNEVEFQVGRTGAITPVAKLKPVFVAGVTVSNATLHNGDEIE 367
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
R NI IGDTV++ R+G+VIP+I + RP D++ P CP+C S I+ IE +AR
Sbjct: 368 RLNIAIGDTVIIRRAGDVIPQIIGVVHDRRPADARQIVFPTECPVCGSLIVRIEGEAVAR 427
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++ L R
Sbjct: 428 CTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLDLTTLSR 486
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L+R+ K A N L +++K+K TT +RFI+ALGIR VGE TA LAN+FK LE + A E
Sbjct: 487 LERMGPKSAENALTSLEKAKNTTLARFIFALGIRDVGEATALNLANHFKTLEALQNADLE 546
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--------NP--------- 598
QL +P +G F ++ + ++ L G++W NP
Sbjct: 547 QLQQVPDVGEVVANRISVFWHEAHNVAVVEDLIAQGVHWETVDVQEVKENPFKGKTVVLT 606
Query: 599 ---------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +S T+Y++ G+ G KL KA +L +++L E+ F+
Sbjct: 607 GTLSQMGRNDAKALLQQLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFL 666
Query: 644 KIVKG 648
+ G
Sbjct: 667 GWING 671
>gi|451936573|ref|YP_007460427.1| DNA ligase (NAD+) [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
gi|451777496|gb|AGF48471.1| DNA ligase (NAD+) [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
Length = 684
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 287/677 (42%), Positives = 430/677 (63%), Gaps = 46/677 (6%)
Query: 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG 73
L +++ L++ + HN+ YY YD+PIISD +YD L+ EL +E YP+L+TK S TQ VG
Sbjct: 8 LKYKIESLRRTIEEHNVHYYCYDSPIISDLEYDNLMCELLNLESTYPDLITKYSPTQRVG 67
Query: 74 LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK----LTKNIEYIAELKFDGI 129
+ + H+ M+SL N F+ EDV +FNKR+ + L+ + +IEY +LK DG+
Sbjct: 68 SSPLASFDKIEHSVPMLSLSNAFTSEDVDLFNKRVISLLRKKIEIKNDIEYFCDLKLDGL 127
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AVN+RYE G L STRGDG IGE++T+NI I IPL L + P++L++R EVL+YKK
Sbjct: 128 AVNIRYEDGVLAYGSTRGDGYIGEDVTSNIRAIKSIPLRL-VGDVPKVLDIRGEVLMYKK 186
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPS-- 247
DF LN G + F NPRNAAAG LR L+ KI+ + L FFA+G G + N P+
Sbjct: 187 DFENLNNNNIKNGERVFVNPRNAAAGSLRNLDSKISAMRKLRFFAYGWGNITDNNHPNKI 246
Query: 248 ------SHSELLNWYQKIGLSICGEY-SVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYK 300
+H +L+W+ +GL + Y V+SG++ ++++YK I R LPY IDGVVYK
Sbjct: 247 IKLNHKTHESVLDWFVSLGLPVNKRYHKVVSGIDGILDYYKSIVKNRNFLPYGIDGVVYK 306
Query: 301 INCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDG 360
+N L+ Q LG++SRAPRFALA+KFL++EA+T++ AI+IQ+GRTG ITPVA L P+ + G
Sbjct: 307 VNSLNKQNILGYSSRAPRFALAHKFLAEEAVTQLVAIDIQVGRTGAITPVARLNPIFVGG 366
Query: 361 ITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPI 420
+T++ ATLHNE+EI RK+I+IGD V++ R+G+VIP++ S++ LRP D+ F + + CP+
Sbjct: 367 VTVSNATLHNENEIRRKDIRIGDFVIIRRAGDVIPEVVSTVAELRPKDTIQFHMLDRCPV 426
Query: 421 CNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVV 480
C+S I IE+ + RC+G C AQ K GL H SRKA NIIG GKK+++KLV+ +
Sbjct: 427 CDSAIKRIENEVTYRCTGGLC-CPAQLKQGLHHALSRKAFNIIGFGKKLVDKLVDIGCIR 485
Query: 481 TAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELA 540
+ VD++++ F +L+ ++ V+ K A N+L +I ++ + S F++A+GI+HVGE TA +++
Sbjct: 486 SLVDVFRLTFSDLMNVELVAEKSATNLLKSIDSARKPSLSSFLFAMGIKHVGEATAVDIS 545
Query: 541 NYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNT 600
F+ +E + A+ E L++ IG T + F ++ + +IS L+ + +Y L T
Sbjct: 546 KRFRTIENIIFASFEDFLSVKDIGYKTAYSIRLFFSEKHNLDVISSLKSIDVYPLPEKQT 605
Query: 601 K-------------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKA 629
K GGKV N ISK NYL+ G+ GKKLE A
Sbjct: 606 KSNCKLEGKLFAITGKLPNISREEMIKYIESNGGKVTNHISKKINYLIAGESFGKKLEFA 665
Query: 630 IKLNIKILDEKNFVKIV 646
I+++D++ F+K++
Sbjct: 666 ENNGIQVIDQEAFIKLI 682
>gi|260912664|ref|ZP_05919150.1| DNA ligase [Pasteurella dagmatis ATCC 43325]
gi|260633042|gb|EEX51207.1| DNA ligase [Pasteurella dagmatis ATCC 43325]
Length = 673
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 279/663 (42%), Positives = 403/663 (60%), Gaps = 34/663 (5%)
Query: 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG 73
+ F + +L+K L R+ Y++ DNP + D +YD+L +LKK+E +YP+ +T+DS TQ VG
Sbjct: 5 IQFEMEQLRKTLRRYEYQYHVLDNPTVPDAEYDRLFHQLKKLEREYPQFITEDSPTQRVG 64
Query: 74 LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVN 132
V H M+SLDN FSD++ F KRI + L L K + + E K DG+AV+
Sbjct: 65 AKPLSGFAQVTHEIPMLSLDNVFSDDEFKAFVKRIQDRLLVLPKQLTFCCEPKLDGLAVS 124
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
+ Y G L QA+TRGDG GE+IT+NI I IPL L + PP LEVR EV + + F
Sbjct: 125 ILYVDGKLVQAATRGDGTTGEDITSNIRTIRNIPLQLLMDNPPGRLEVRGEVFMPQAGFE 184
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
LN+ G K F NPRNAAAG LRQL+PKI + L A+ +G G+ +P +H E
Sbjct: 185 ALNEQALIKGEKTFANPRNAAAGSLRQLDPKITSQRPLVLNAYSIGIAEGVELPVTHFER 244
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
L W + IG+ + E + G+ +++FY+ I KR +L Y+IDG V KIN ++ Q++LGF
Sbjct: 245 LQWLKSIGIPVNNEIQLCDGIENVLDFYRTIMKKRSDLGYDIDGTVLKINEIALQQELGF 304
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
S+APR+A+AYKF ++E LT + + Q+GRTG ITPVA L PV + G+T++ ATLHN
Sbjct: 305 ISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLAPVFVAGVTVSNATLHNGD 364
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
EI R ++ IGDTV++ R+G+VIP+I + RP D+K + P+ CP+C+S I+ IE
Sbjct: 365 EIARLDVAIGDTVIIRRAGDVIPQIIGVVHEKRPADAKKIEFPSNCPVCDSIIVRIEGEA 424
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ + T DL+K++
Sbjct: 425 VARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGAKLIEQLVDREQIHTPADLFKLDLTT 483
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
L+RL+R+ K A N L +++K+K TT +RFI+ALGIR VGE TA LANYFK L + +A
Sbjct: 484 LMRLERMGPKSAQNALDSLEKAKKTTLARFIFALGIREVGEATALNLANYFKTLTALKEA 543
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL--------NNPNTK--- 601
T EQL + +G F +P + ++ L GI+W +NP +
Sbjct: 544 TLEQLQQVQDVGEVVANRIFVFWREPHNVEVVDDLLAQGIHWDAVEITEANDNPFKEKTI 603
Query: 602 ---------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
G KV +S T+ ++ G+ G KL KA +LN++++DE+
Sbjct: 604 VLTGTLTQMGRTEAKALLQRLGAKVSGSVSAKTDLVIAGESAGSKLTKANELNVQVIDEQ 663
Query: 641 NFV 643
F+
Sbjct: 664 TFL 666
>gi|430760715|ref|YP_007216572.1| DNA ligase [Thioalkalivibrio nitratireducens DSM 14787]
gi|430010339|gb|AGA33091.1| DNA ligase [Thioalkalivibrio nitratireducens DSM 14787]
Length = 673
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 248/651 (38%), Positives = 394/651 (60%), Gaps = 33/651 (5%)
Query: 28 HNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTF 87
H+ YY+ D+P ISD +YD LL EL++IE ++PEL+ +S TQ VG V H
Sbjct: 23 HDWRYYVLDDPEISDAEYDALLAELQRIEAEHPELVVPESPTQRVGGAPASGFAPVRHRL 82
Query: 88 KMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRG 147
M+SL+NGFS++++ F++R+ L+ + Y+AE K DG+AV+L Y G L QA+TRG
Sbjct: 83 PMLSLNNGFSEDEIRSFDRRVRERLEADAAVVYMAEPKLDGLAVSLLYRDGRLVQAATRG 142
Query: 148 DGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFT 207
DG GE++T N+ + IPL L+ P LEVR EV + +DF LN++ G + F
Sbjct: 143 DGETGEDVTGNVRTVRSIPLALSGSGWPRELEVRGEVFMRHRDFEHLNRHLQEAGERGFM 202
Query: 208 NPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEY 267
NPRNAAAG LRQL+P + + L FFA+G G + +P + S +L+W++ +G+ +C E
Sbjct: 203 NPRNAAAGSLRQLDPAVTARRPLTFFAYGPGSVGDHPLPETQSGVLDWFESLGIPVCPER 262
Query: 268 SVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLS 327
+ +SGV+ + +Y+ + +R LPY+IDGVV+K++ Q+++GF +RAPR+A+AYKF +
Sbjct: 263 ARVSGVDGALTYYRAMAERRAELPYDIDGVVFKLDAREAQQRIGFVARAPRWAIAYKFPA 322
Query: 328 KEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVV 387
+E T++ A++ Q+GRTG +TPVA L+PVL+ G+ ++ ATLHN EI RK+++IG VVV
Sbjct: 323 EERTTRLVAVDFQVGRTGALTPVARLEPVLVGGVMVSNATLHNMDEIARKDVRIGGRVVV 382
Query: 388 HRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQR 447
R+G+VIP++ R ++ ++P CP C S++ + +ARC+G + C AQR
Sbjct: 383 RRAGDVIPEVVGRAGGEREPQTRTIELPAACPECGSRVEQEDGKAVARCTGGLV-CPAQR 441
Query: 448 KAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNI 507
+ L+HF SRKA++I G G+++IE+LV + V +L+ ++ L DR+ K A N+
Sbjct: 442 REALRHFVSRKALDIEGFGERLIEQLVASGTVTNPAELFALDAGRLEGFDRIGPKSAQNL 501
Query: 508 LLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTT 567
A+Q+++ TT +RF+YALGIR +GE TA+ LA +F L+ + +A+ E+L I +G
Sbjct: 502 ERALQRARETTLARFVYALGIREIGEVTARALAAHFGALDPLMEASVEELEAIRDVGPVV 561
Query: 568 VKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK-------------------------- 601
+ F +P +R +I+ LR+ G++W
Sbjct: 562 ARHVASFFAEPHNREVIAALRNAGVHWPEPEPADTDARPLEGRTYVLTGSLEGMTREQAS 621
Query: 602 ------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
G KV +S+ T ++ G PG KL +A L + +LDE ++++
Sbjct: 622 QRLQALGAKVTGNVSRQTTAVIAGASPGSKLARAEALGVPVLDEAGLLELI 672
>gi|389871794|ref|YP_006379213.1| DNA ligase [Advenella kashmirensis WT001]
gi|388537043|gb|AFK62231.1| DNA ligase [Advenella kashmirensis WT001]
Length = 690
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 255/588 (43%), Positives = 384/588 (65%), Gaps = 10/588 (1%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
+L + L+ +++ HN AY++ D P ISD ++D L+ L IE ++PE + DS +Q V
Sbjct: 8 QLQAELERLRAQINTHNHAYHVMDAPTISDTEFDGLMQRLLAIEAEHPEWVNADSPSQRV 67
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT------KNIEYIAELKF 126
G V H M+SL N FS E+V F+KR+++ L+ + +EY E+K
Sbjct: 68 GSAPLPFFDSVRHAVPMLSLGNAFSSEEVTAFDKRVSDALRAAGMLEPAEKVEYNCEVKM 127
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+A+++RYE G L +A+TRGDG GE++T NI + +PL L+ +P +LEVR EVL+
Sbjct: 128 DGLAISIRYENGRLVRAATRGDGLSGEDVTANIRTLRSVPLTLSPGFP-AVLEVRGEVLM 186
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM--N 244
++ DF KLNK + G K F NPRNAAAG LRQL+P++ + L FFA+G G+L G+
Sbjct: 187 HRSDFEKLNKQQAAAGDKTFVNPRNAAAGSLRQLDPRLTAKRPLRFFAYGWGQLDGLVAP 246
Query: 245 MPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCL 304
+P +HS +L+W +GLS+ ++G + L+ FY++I R +LP++IDGVVYK+N L
Sbjct: 247 LPETHSGMLDWLSSLGLSVGKYRKRVTGADALLAFYEEIGQTRMSLPFDIDGVVYKVNSL 306
Query: 305 STQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITIT 364
Q +LGF SRAPRFALA+KF ++EA T + I +Q+GRTG +TPVA L+PV + G+T+T
Sbjct: 307 KAQTELGFVSRAPRFALAHKFAAEEATTVLLDIEVQVGRTGALTPVARLQPVFVGGVTVT 366
Query: 365 RATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSK 424
ATLHNE EI RK+++IGDTVVV R+G+VIP++ +L +RP D+++F + CP+C S
Sbjct: 367 NATLHNEDEIRRKDVRIGDTVVVRRAGDVIPEVLRPVLEMRPADARLFAMVTQCPVCGSA 426
Query: 425 IIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVD 484
+ + RC+G C AQRK L H + RKA++I GLG+K+I++LV+ + V + D
Sbjct: 427 VERLPDEAATRCTGGLF-CAAQRKQSLLHAAGRKALDIEGLGEKLIDQLVDHDWVRSIAD 485
Query: 485 LYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFK 544
LY ++ + ++ LDR+ K A N++ AI++SK SR +YALGIRHVGETTA++LA YF
Sbjct: 486 LYSLSVEKVMGLDRMGRKSAENLIAAIEESKHVELSRIVYALGIRHVGETTARDLARYFG 545
Query: 545 NLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI 592
+L+ + A E L + +G ++ F +P + ++ LR G+
Sbjct: 546 SLDALIAADEAAFLQVNDVGPVVAESLRAFFAEPHNIAVLDALRAAGV 593
>gi|423121502|ref|ZP_17109186.1| DNA ligase [Klebsiella oxytoca 10-5246]
gi|376393881|gb|EHT06535.1| DNA ligase [Klebsiella oxytoca 10-5246]
Length = 671
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 269/664 (40%), Positives = 404/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E ++P+L+T DS TQ VG
Sbjct: 7 KLTELRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELEAQHPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F +E + FNKR+ + LK + ++ Y ELK DG+AV++ YE
Sbjct: 67 LASFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDDLIYCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE+IT N+ I IPL L P+ LEVR EV + + F K+N+
Sbjct: 127 NGVLVQAATRGDGTTGEDITANVRTIRAIPLRLRGDNIPQRLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SHS L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGALTGGELPESHSGRLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ +Y+K+ R NL ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCHTPEEVLTYYRKVEEDRPNLGFDIDGVVIKVDSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+CNS + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSDRPEETREIVFPTHCPVCNSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++KSK TTF+RF+YALGIR VGE TA LA YF +E + +AT E+
Sbjct: 486 DRMGPKSAQNVVNALEKSKATTFARFLYALGIREVGEATAAGLAAYFATIEALEQATIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I+QLR G+ W
Sbjct: 546 LQKVPDVGIVVATHVFHFFAEENNRDVIAQLRAEGVNWPAPVVVNAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQLSRDDAKARLMALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|262402686|ref|ZP_06079247.1| DNA ligase [Vibrio sp. RC586]
gi|262351468|gb|EEZ00601.1| DNA ligase [Vibrio sp. RC586]
Length = 669
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 284/674 (42%), Positives = 404/674 (59%), Gaps = 42/674 (6%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S + R+TEL++ LH H + YY+ D P I D +YD+L+ EL +IE ++PEL+T DS +
Sbjct: 1 MSNVEQRLTELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLEIEAQHPELITPDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + V H M+SLDN F D ++ F +R+T+ + + + E K DG+A
Sbjct: 61 RVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRIPAVQQSHFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGVDFPVRLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH
Sbjct: 181 FEALNARALQKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGQLTTSHY 240
Query: 251 E----LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
+ L NW GL IC E V++ + + FY+ I +R +L YEIDGVV K++
Sbjct: 241 QRFLQLKNW----GLPICPETKVVTSLADVKSFYQDILQRRQSLVYEIDGVVIKVDDTQL 296
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q++LGF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ A
Sbjct: 297 QERLGFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNA 356
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKII 426
TLHN EI R + +GDTVVV R+G+VIP+I S +L R D+K + P CP+C S+I
Sbjct: 357 TLHNADEIERLGVMVGDTVVVRRAGDVIPQIVSVVLERRQADAKPIRFPTCCPVCQSEIE 416
Query: 427 YIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY 486
+E +ARC+G I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+
Sbjct: 417 RVEGEAVARCTGGLI-CQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLF 475
Query: 487 KINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546
++ L L+R+ K A N++ A+ K+K TT RF+YALGIR VGE TA LA +F L
Sbjct: 476 RLRAGELTILERMGPKSAQNVIDALNKAKQTTLPRFLYALGIREVGEATALNLAQHFLTL 535
Query: 547 ECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------ 594
E + +A+ EQL+ +P +G F Q ++ +I++L ++GI W
Sbjct: 536 EAIAQASIEQLIEVPDVGGVVASHLHAFFAQQRNQQVIAELVELGITWPVLAAVPVAVDS 595
Query: 595 ---------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLN 633
L+ + K G KV +SKNT+ + G+ G KL KA +L
Sbjct: 596 ALAGKIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLTKAAELG 655
Query: 634 IKILDEKNFVKIVK 647
I++LDE+ ++ VK
Sbjct: 656 IQVLDEQALIEFVK 669
>gi|351728771|ref|ZP_08946462.1| DNA ligase [Acidovorax radicis N35]
Length = 695
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 269/687 (39%), Positives = 408/687 (59%), Gaps = 43/687 (6%)
Query: 3 FHAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPEL 62
F A + ++ + ++ L+ +L++ YY+ D P + D +YD++ EL+ +E +P+L
Sbjct: 8 FSAPAPADQAQPAIKIKALRDQLNQWAHQYYVLDEPTVPDAEYDRVFRELQGLEAAHPDL 67
Query: 63 LTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDE--DVIIFNKRITNELKLTKN--- 117
+T DS TQ V E V H M+S+ E F+ R+ EL LT
Sbjct: 68 VTPDSPTQRVIGAVMEGLASVRHAVPMLSIHTETDTEATGAQAFDARVRRELGLTDADPA 127
Query: 118 IEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPEL 177
IEY+AE KFDG+A++LRYE G L QA+TRGDG +GE++T NI I +IPL L PP L
Sbjct: 128 IEYVAEPKFDGLAMSLRYENGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLPDGVPP-L 186
Query: 178 LEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGV 237
LEVR EV + + DF LN+ + G K F NPRNAAAG +RQL+ I + L FFA+G+
Sbjct: 187 LEVRGEVYMRRADFDALNERQREQGGKTFVNPRNAAAGAVRQLDSGITAQRPLSFFAYGL 246
Query: 238 GELR--GMNMP--SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYE 293
G + G P +H E+L + G + + + +G +L+ F++++ R LPY+
Sbjct: 247 GAITPPGEGGPVFRTHYEMLLTLKSWGFPVAAQVQIATGATELVAFHQQVGASRDALPYD 306
Query: 294 IDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALL 353
IDGVVYK+N L Q+ LGF +R PR+A+A+K+ ++E TKI+ I++Q+GRTG ITPVA L
Sbjct: 307 IDGVVYKVNSLQLQRDLGFKTREPRWAVAHKYPAQEMATKIEGIDVQVGRTGKITPVARL 366
Query: 354 KPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFK 413
PV + G+T+T ATLHN EI +K +++GDTV+V R+G+VIP++ + R F+
Sbjct: 367 APVFVGGVTVTNATLHNLFEIRKKGVRVGDTVIVRRAGDVIPEVVGVMPGNRMGYVPNFQ 426
Query: 414 IPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKL 473
+P CP+C S ++ + RC+G C AQRK + HF++R+AM+I GLG K++++L
Sbjct: 427 MPKACPVCGSDVVREKGEANHRCTGGLF-CAAQRKEAILHFAARRAMDIEGLGDKLVDQL 485
Query: 474 VNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGE 533
V+AN++ T DLY++ +L+ L+R++ K A N+L A++KSK TT RF++ LG+RHVGE
Sbjct: 486 VDANVIRTLPDLYRLGLTSLIALERMAEKSAQNVLAALEKSKQTTLPRFLFGLGLRHVGE 545
Query: 534 TTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIY 593
TAK+LA +F L+ + A+ EQLL + +G ++ F QP +R ++ QLR G+
Sbjct: 546 ATAKDLARHFGTLDAIMDASVEQLLEVNDVGPVVAQSLHTFFQQPHNREVVEQLRACGVT 605
Query: 594 WLNNP--------------------------------NTKGGKVVNFISKNTNYLVKGQK 621
W P G KV +SK T+Y+V G++
Sbjct: 606 WPEGPVAERAPQILAGKTVVLTGTLPTLSRDAAKDMLEAAGAKVAGSVSKKTSYVVAGEE 665
Query: 622 PGKKLEKAIKLNIKILDEKNFVKIVKG 648
G KL KA +L + +LDE + ++ G
Sbjct: 666 AGSKLAKAEELGVPVLDEAGMLALLSG 692
>gi|89094416|ref|ZP_01167356.1| DNA ligase [Neptuniibacter caesariensis]
gi|89081308|gb|EAR60540.1| DNA ligase [Oceanospirillum sp. MED92]
Length = 674
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 280/662 (42%), Positives = 398/662 (60%), Gaps = 34/662 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ +L+ +L+ HN YY+ D+P + D +YD+L ELKK+E PEL+T+DS TQ VG
Sbjct: 7 LQQLRDQLNHHNYQYYVLDDPEVPDAEYDRLFRELKKLESDNPELITEDSPTQRVGSTPL 66
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
V H M+SLDN F+DED+ F++RI + L + + I Y E K DGIAV+L YE
Sbjct: 67 SAFSQVSHELPMLSLDNAFNDEDMEEFDRRIKDRLNMQETISYACEPKLDGIAVSLLYEQ 126
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L + +TRGDG+ GE+IT N+ I IPL L P+ LEVR E+ + K F LN
Sbjct: 127 GLLVRGATRGDGSTGEDITQNVRTIPTIPLKLTGDNFPDRLEVRGEIYMPKAGFDALNDK 186
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
G K F NPRNAAAG LRQL+ +I ++ L ++ VG + G + HSE+L +
Sbjct: 187 ARATGQKTFVNPRNAAAGSLRQLDSRITASRPLEMCSYSVGVVEGGALAGKHSEILAQLK 246
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
+ G + + GV +++Y++I+ R LPYEIDGVV+K++ L Q++LGF SRAP
Sbjct: 247 EWGFRLNPLLESVEGVAGCLDYYRRISELRDTLPYEIDGVVFKVDQLELQQRLGFVSRAP 306
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+A+KF ++E LT I++I Q+GRTG +TPVA L+PV + G+T++ ATLHN EI R
Sbjct: 307 RWAIAHKFPAQEELTSIRSIEFQVGRTGAVTPVARLEPVFVGGVTVSNATLHNMDEIERL 366
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
+++ GDTVV+ R+G+VIP++ + RP D++ IP+ CPIC SKI IE +ARCS
Sbjct: 367 DVRAGDTVVIRRAGDVIPQVVRVLHEKRPADTEAVIIPDACPICESKIERIEGEAVARCS 426
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G + C AQRK L+HF+SRKAM+I GLG K+IE LV+ ++V DLY + L RL+
Sbjct: 427 GG-LYCEAQRKEALKHFASRKAMDIDGLGDKLIEMLVDLDMVHNPADLYALQQTELARLE 485
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+ K A N++ AIQ S+ T RF+YALGIR VGE TA+ LA +F +L + +A+EE L
Sbjct: 486 RMGPKSAENLVNAIQASRNTELPRFLYALGIREVGEATARSLAMHFLDLPALIEASEEAL 545
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQLRD-VGIYW---------------------- 594
L +P +G K F Q + ++ LR+ G+ W
Sbjct: 546 LEVPDVGPIVAKHIKSFFQQSHNIEVLDALREKAGVSWSVLETKDEESQPISGETWVLTG 605
Query: 595 ----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
+ K G KV +S T+ +V G G KL+KA +L IK +DE +FV
Sbjct: 606 KLEQMGRSEAKNYLLELGAKVAGSVSAKTDCVVAGPGAGSKLKKATELGIKTMDEDSFVS 665
Query: 645 IV 646
+
Sbjct: 666 FL 667
>gi|113460523|ref|YP_718587.1| NAD-dependent DNA ligase LigA [Haemophilus somnus 129PT]
gi|122945214|sp|Q0I2H6.1|DNLJ_HAES1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|112822566|gb|ABI24655.1| DNA ligase (NAD+) [Haemophilus somnus 129PT]
Length = 673
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 287/663 (43%), Positives = 399/663 (60%), Gaps = 34/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ EL++ L H Y++ DNP I D++YD+L +LK +E++YPE +++S TQ VG
Sbjct: 11 QIEELRQLLRHHEYQYHVLDNPQIPDSEYDRLFHQLKALEQQYPEYASENSPTQRVGAKP 70
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVNLRY 135
N V H M+SLDN FSDED F KRI + L + ++ + E K DG+AV++ Y
Sbjct: 71 LSNFAQVKHDIPMLSLDNAFSDEDFFAFVKRIQDRLIHVHHSLTFCCEPKLDGLAVSILY 130
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
G L QA+TRGDG GE+IT NI I IPL L PP LEVR EV + + F KLN
Sbjct: 131 INGQLVQAATRGDGTTGEDITANIRTIRNIPLQLLTDNPPARLEVRGEVFMSQAGFEKLN 190
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
K G K F NPRNAAAG LRQL+PKI + L A+G+G G+ +P +H L W
Sbjct: 191 KTALAKGEKTFANPRNAAAGSLRQLDPKITGQRPLMLNAYGIGIAEGVELPDTHFARLQW 250
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ IG+ + E + G+ K+++FY+ I KR +L Y+IDG V KIN + Q++LGF S+
Sbjct: 251 LKSIGIPVNNEIQLCHGIEKVLDFYRTIKQKRSSLGYDIDGTVLKINDIDLQQQLGFISK 310
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI
Sbjct: 311 APRWAIAYKFPAQEELTILNNVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIA 370
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
R +I IGDTV+V R+G+VIP+I + RP ++K P+ CP+C+S I IE +AR
Sbjct: 371 RLDIAIGDTVIVRRAGDVIPQIIGVLHERRPENAKSIIFPSNCPVCDSVISKIEGEAVAR 430
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G I C AQRK L+HF SRKAM+I G+G K+IE+LV +V T DL+K++ L+R
Sbjct: 431 CTGGLI-CAAQRKEALKHFVSRKAMDIDGIGAKLIEQLVERELVHTPADLFKLDQVTLMR 489
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L+R+ K A N L ++ K+K TT +RFI+ALGIR VGETTA LA +FK LE AT E
Sbjct: 490 LERMGAKSAENALASLAKAKKTTLARFIFALGIREVGETTALNLATHFKTLEAFENATFE 549
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------LN 596
QL + +G K F ++P + ++ L GI+W L
Sbjct: 550 QLQKVQDVGEVVAKRIRSFWSEPHNVAVVKDLIAQGIHWDDVEVKEVRDNPLKGKTVVLT 609
Query: 597 NPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
TK G KV +S T++++ G+ G KL KA +L I IL E F+
Sbjct: 610 GTLTKMGRSEAKEYLLQLGCKVSGSVSSKTDFVIAGESAGSKLTKATELGINILSENEFL 669
Query: 644 KIV 646
++
Sbjct: 670 ALL 672
>gi|170718864|ref|YP_001784038.1| NAD-dependent DNA ligase LigA [Haemophilus somnus 2336]
gi|254781341|sp|B0USD9.1|DNLJ_HAES2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|168826993|gb|ACA32364.1| DNA ligase, NAD-dependent [Haemophilus somnus 2336]
Length = 667
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 289/663 (43%), Positives = 400/663 (60%), Gaps = 34/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ EL++ L H Y++ DNP I D++YD+L +LK +E++YPE +++S TQ VG
Sbjct: 5 QIEELRQLLRHHEYQYHVLDNPQIPDSEYDRLFHQLKALEQQYPEYASENSPTQRVGAKP 64
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVNLRY 135
N V H M+SLDN FSDED F KRI + L + ++ + E K DG+AV++ Y
Sbjct: 65 LSNFAQVKHDIPMLSLDNAFSDEDFFAFVKRIQDRLIHVHHSLTFCCEPKLDGLAVSILY 124
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
G L QA+TRGDG GE+IT NI I IPL L PP LEVR EV + + F KLN
Sbjct: 125 INGQLVQAATRGDGTTGEDITANIRTIRNIPLQLLTDNPPTRLEVRGEVFMSQAGFEKLN 184
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
K G K F NPRNAAAG LRQL+PKI + L A+G+G G+ +P +H L W
Sbjct: 185 KTALAKGEKTFANPRNAAAGSLRQLDPKITGQRPLMLNAYGIGIAEGVELPDTHFARLQW 244
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ IG+ + E + G+ K+++FY+ I KR +L Y+IDG V KIN + Q++LGF S+
Sbjct: 245 LKSIGIPVNNEIQLCHGIEKVLDFYRTIKQKRSSLGYDIDGTVLKINDIDLQQQLGFISK 304
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI
Sbjct: 305 APRWAIAYKFPAQEELTILNNVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIA 364
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
R +I IGDTV+V R+G+VIP+I + RP ++K P CP+C+S I IE +AR
Sbjct: 365 RLDIAIGDTVIVRRAGDVIPQIIGVLHERRPENAKSIIFPTNCPVCDSVISKIEGEAVAR 424
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G I C AQRK L+HF SRKAM+I G+G K+IE+LV +V T DL+K++ L+R
Sbjct: 425 CTGGLI-CAAQRKEALKHFVSRKAMDIDGIGAKLIEQLVERELVHTPADLFKLDQVTLMR 483
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L+R+ K A N L ++ K+K TT +RFI+ALGIR VGETTA LA +FK LE AT E
Sbjct: 484 LERMGAKSAENALASLAKAKKTTLARFIFALGIREVGETTALNLATHFKTLEAFENATFE 543
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--------NP--------- 598
QL + +G K F ++P + ++ L GI+W N NP
Sbjct: 544 QLQKVQDVGEVVAKRIRSFWSEPHNVAVVKDLIAQGIHWDNVEVKEVRDNPLKGKTVVLT 603
Query: 599 --NTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
TK G KV +S T++++ G+ G KL KA +L I IL E F+
Sbjct: 604 GTLTKMGRSEAKEYLLQLGCKVSGSVSSKTDFVIAGESAGSKLTKATELGINILSENEFL 663
Query: 644 KIV 646
++
Sbjct: 664 ALL 666
>gi|307248328|ref|ZP_07530352.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
gi|306855149|gb|EFM87328.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
Length = 682
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 275/662 (41%), Positives = 407/662 (61%), Gaps = 39/662 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+++L + Y++ DNP++ D +YD+L+ ELK +E ++PE +T DS TQ VG +
Sbjct: 21 LRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQRVGAKPLDGF 80
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAVNLRYEY 137
V H M+SLDN FSDE++ F +R+ E +T++ + + E K DG+AV++ Y
Sbjct: 81 AQVTHEIPMLSLDNAFSDEELDGFLRRM--ESYITEDPHTLAFCCEPKLDGLAVSILYVD 138
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L QA+TRGDG GE+IT+NI I IPL LN+ PP LEVR EV + +K F LN+
Sbjct: 139 GVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKGFEALNER 198
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHSELLNWY 256
G K F NPRNAAAG LRQL+PKI + + L A+G+G + +P++H E L W
Sbjct: 199 ALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATHFERLQWL 258
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ IG+ + E + +G +L+ FY I KR L Y+IDG V K+N + Q++LGF SR+
Sbjct: 259 KSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQLGFISRS 318
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 319 PRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIER 378
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
I IGDTV++ R+G+VIP+I ++ RP ++K + P CP+C S ++ +E +ARC
Sbjct: 379 LGIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTACPVCESAVVRVEGEAVARC 438
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SRKAM+I G+G+K+IE+L+ +V T DL+K++ L+RL
Sbjct: 439 TGGLF-CGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMECELVHTPADLFKLDHTTLMRL 497
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N L +I+K+K TT +RF++ALGIR VGE TA+ LAN+F NL+ + AT EQ
Sbjct: 498 ERMGEKSAQNALNSIEKAKNTTLARFLFALGIRDVGEATAQNLANHFHNLDAIRAATFEQ 557
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------LNNP---------- 598
L + +G ++F +P + ++ L GI+W +NP
Sbjct: 558 LQEVQDVGEVVANRIVRFWQEPHNVAVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTG 617
Query: 599 --------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
+ G KV +S T+YL+ G+K G KL KA +L +K+L E+ F+
Sbjct: 618 TLTQLTRDQAKALLQSFGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIA 677
Query: 645 IV 646
+
Sbjct: 678 LT 679
>gi|291613759|ref|YP_003523916.1| DNA ligase, NAD-dependent [Sideroxydans lithotrophicus ES-1]
gi|291583871|gb|ADE11529.1| DNA ligase, NAD-dependent [Sideroxydans lithotrophicus ES-1]
Length = 701
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 275/695 (39%), Positives = 419/695 (60%), Gaps = 61/695 (8%)
Query: 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG 73
++ R L+K++ ++ YY+ D P I D +YD+L EL+ +E ++PELL DS TQ VG
Sbjct: 6 VTRRAALLRKQIAEYDYWYYVKDMPRIPDAEYDKLFRELQALEAQHPELLASDSPTQRVG 65
Query: 74 LVGGENSKYVHHTFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDG 128
+ + V H M+S+ + SD+ I F+ R+ EL L +N IEY+ ELKFDG
Sbjct: 66 GKPLDMFQPVRHAVPMLSIRTETDISDQGAIAFDARVRRELGLNENDPPIEYVCELKFDG 125
Query: 129 IAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYK 188
+A+NLRYE G L QA+TRGDG GE++T N+ IH+IPL L P +LEVR EV + +
Sbjct: 126 LALNLRYEQGRLVQAATRGDGETGEDVTQNVRTIHQIPLSLE-GMCPGVLEVRGEVYMAR 184
Query: 189 KDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGE-LRGMNMPS 247
DF + N+ + GL NPRN AAG +RQL+P + + L FFA+G+GE + G +
Sbjct: 185 PDFERYNERQRQQGLPTLVNPRNGAAGSIRQLDPALAARRPLKFFAYGLGEKVEGWDWRE 244
Query: 248 SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQ 307
+H +L+ + G + E V+ G L+EF+++I R +LP++IDGVVYK+N ++ Q
Sbjct: 245 THKGVLDQLEAWGFPVSHECRVVHGAQGLVEFHRRIEAMRDSLPFDIDGVVYKVNSIALQ 304
Query: 308 KKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRAT 367
+KLGF SR PR+A+A+KF ++E +T++ I IQ+GRTG +TPVA L+PV + G T++ AT
Sbjct: 305 EKLGFVSREPRWAVAHKFPAEEQVTRLNGIEIQVGRTGKLTPVAKLEPVFVGGTTVSNAT 364
Query: 368 LHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLR------PNDS------------ 409
LHNE EI RK I IGD V+V R+G+VIP++ + +++ P+++
Sbjct: 365 LHNEGEIRRKGIHIGDMVIVRRAGDVIPEVVGVVPTMKVEPTIPPSNTINLELTAPSPTL 424
Query: 410 KIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKM 469
F +P CP+C S ++ E ARC+G C AQRK + HF+ R+AM+I GLG K+
Sbjct: 425 SAFMMPTSCPVCGSHVVREEGEADARCTGGLF-CAAQRKQAILHFAGRRAMDIEGLGDKL 483
Query: 470 IEKLVNANIVVTAVDLYK---INFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYAL 526
+++LV+ NI+ + DLY +N + L LDR++ K A NI+ A++KSK T +RF++AL
Sbjct: 484 VDQLVDENIIHSLSDLYDEKVLNSQTLAALDRMAEKSAQNIVDALEKSKSTALNRFLFAL 543
Query: 527 GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQ 586
GIRHVGE+TAK+LA +F LE + +A EQLL +P +G ++ + F + +R ++ Q
Sbjct: 544 GIRHVGESTAKDLARHFGKLEAIMQANVEQLLAVPDVGPVVAQSIVDFFGEAHNREVVQQ 603
Query: 587 LRDVGIYWLNNPNTK--------------------------------GGKVVNFISKNTN 614
LR +G++W + + G KV +SK T+
Sbjct: 604 LRILGVHWAEHEGSSVRELPLSGKTFVLTGTLANLSRDEAKSRLEALGAKVAGSVSKKTD 663
Query: 615 YLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGF 649
+V G + G KL+KA +LN+ + DE+ +K +
Sbjct: 664 CVVAGVEAGSKLDKARELNVPVWDEQQLFDQLKEY 698
>gi|372268503|ref|ZP_09504551.1| NAD-dependent DNA ligase [Alteromonas sp. S89]
Length = 678
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 266/667 (39%), Positives = 402/667 (60%), Gaps = 32/667 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R +L L+R N YY+ D P + D +YD+ L EL+++E+ YP+L++ DS TQ VG
Sbjct: 12 RAQQLHDILNRANYEYYVLDAPDLPDAEYDRCLRELQQLEQSYPQLISSDSPTQRVGAQP 71
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN FSDED+ F++RI L + IEY E K DGIAV+L Y
Sbjct: 72 LAAFTQIRHEMPMLSLDNAFSDEDMEDFDRRIRERLNSAQPIEYACEPKLDGIAVSLLYR 131
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L++A+TRGDG +GE+IT N+ I+ IPL L PE+LEVR E+ + K F LN+
Sbjct: 132 KGLLERAATRGDGTVGEDITQNVRTIYSIPLKLLADDVPEVLEVRGEIYMPKAGFNALNE 191
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I + L A+ VG + G +P HS++L
Sbjct: 192 KARAAGEKLFVNPRNAAAGSLRQLDSRITAQRPLEMCAYSVGLVEGGELPERHSDILAQL 251
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
G I E +V + + I++++K+ KR LPY+IDG+V+K+N + QK+LGF +RA
Sbjct: 252 NSWGFRINAEMAVAENIQQCIDYHRKLGEKRTELPYDIDGIVFKVNSIPLQKRLGFVARA 311
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A AYKF ++E +T++ + Q+GRTG +TPVA L+PV + G+T++ ATLHN EI R
Sbjct: 312 PRWATAYKFPAQEEMTQLLDVEFQVGRTGAVTPVARLQPVFVGGVTVSNATLHNRDEIER 371
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV++ R+G+VIP++ S + S RP D++ + P+ CP+C+S + +ARC
Sbjct: 372 LGVKIGDTVIIRRAGDVIPQVVSVVESRRPEDARDIEFPSHCPVCDSPVEATPGEAVARC 431
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG I C AQRK ++HF+SRKAM+I GLG K++E+LV+ ++ + LY ++ + L+ L
Sbjct: 432 SGGLI-CSAQRKQAIKHFASRKAMDIDGLGDKLVEQLVDEGLLHSVSGLYHLSLEPLMGL 490
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N+L A+++SK TT +F+YALG+R VGE TA+ LA +F +L+ + +A E
Sbjct: 491 ERMGEKSAQNLLDALERSKDTTLPKFLYALGVREVGEATARNLARHFGDLDQVMQADSEA 550
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L + +G +F Q + ++ L+ G++W
Sbjct: 551 LQQVEDVGPVVAHYVAEFFEQSHNLEEVAALQQAGVHWEAEVQESGSQPLAGQTWVLTGK 610
Query: 595 ---LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
L+ K G KV +S NT+ +V G G KL KA +LN+ +LDE+ +
Sbjct: 611 LETLSRSEAKDYLQRLGAKVAGSVSANTHTVVAGPGAGSKLNKAQELNLPVLDEEGLMAK 670
Query: 646 VKGFSTE 652
++ + E
Sbjct: 671 LREWGVE 677
>gi|46143448|ref|ZP_00135242.2| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II)
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|126208768|ref|YP_001053993.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|166215385|sp|A3N1V2.1|DNLJ_ACTP2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|126097560|gb|ABN74388.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 5b str. L20]
Length = 683
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 276/662 (41%), Positives = 408/662 (61%), Gaps = 39/662 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+++L + Y++ DNP++ D +YD+L+ ELK +E ++PE +T DS TQ VG +
Sbjct: 22 LRQKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITVDSPTQRVGAKPLDGF 81
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAVNLRYEY 137
V H M+SLDN FSDE++ F +R+ E +T++ + + E K DG+AV++ Y
Sbjct: 82 AQVTHEIPMLSLDNAFSDEELDGFLRRM--ESYITEDPHTLAFCCEPKLDGLAVSILYVD 139
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L QA+TRGDG+ GE+IT+NI I IPL LN+ PP LEVR EV + +K F +LN+
Sbjct: 140 GVLSQAATRGDGSTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKGFEELNER 199
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHSELLNWY 256
G K F NPRNAAAG LRQL+PKI + + L A+G+G + +P++H E L W
Sbjct: 200 ALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATHFERLQWL 259
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ IG+ + E + +G +L+ FY I KR L Y+IDG V K+N + Q++LGF SR+
Sbjct: 260 KSIGIPVNNEIRLATGREQLLAFYANIQAKRPTLGYDIDGTVLKVNDIGLQEQLGFISRS 319
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF S+E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 320 PRWAIAYKFPSQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIER 379
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
I IGDTV++ R+G+VIP+I ++ RP ++K + P CP+C S ++ +E +ARC
Sbjct: 380 LGIVIGDTVIIRRAGDVIPQIVGVVMDRRPENAKKIEFPTACPVCESAVVRVEGEAVARC 439
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SRKAM+I G+G+K+IE+L+ +V T DL+K++ L+RL
Sbjct: 440 TGGLF-CGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMERELVHTPADLFKLDHTTLMRL 498
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N L +I+K+K TT +RF++ALGIR VGE TA+ LAN+F NL + AT EQ
Sbjct: 499 ERMGEKSAQNALNSIEKAKNTTLARFLFALGIRDVGEATAQNLANHFHNLAAIRTATFEQ 558
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------LNNP---------- 598
L + +G ++F +P + ++ L G++W +NP
Sbjct: 559 LQAVQDVGEVVANRIVRFWQEPHNVAVVEDLISQGVHWQDVIQVEIADNPLKGKNVVLTG 618
Query: 599 --------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
+ G KV +S T+YL+ G+K G KL KA +L +KIL E+ F+
Sbjct: 619 TLTQLTRDQAKALLQSFGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILTEQEFIA 678
Query: 645 IV 646
+
Sbjct: 679 LT 680
>gi|254785950|ref|YP_003073379.1| DNA ligase, NAD-dependent [Teredinibacter turnerae T7901]
gi|237685872|gb|ACR13136.1| DNA ligase, NAD-dependent [Teredinibacter turnerae T7901]
Length = 676
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 273/677 (40%), Positives = 397/677 (58%), Gaps = 34/677 (5%)
Query: 5 AKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLT 64
A ++ + R EL + L+ HN YYL D P I D +YD+L ELK +E ++P+L T
Sbjct: 2 ADSQVPSEAVMRRCNELHQLLNHHNRQYYLLDEPEIPDAEYDRLFHELKTLEAEFPQLET 61
Query: 65 KDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAEL 124
DS TQ VG + V H M+SLDN FSDED+ F KRI + L +EY E
Sbjct: 62 ADSPTQRVGAEPLKGFSSVQHEVPMLSLDNAFSDEDMRAFEKRIQDRLASDAELEYACEP 121
Query: 125 KFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEV 184
KFDGIAV+L Y G L++ +TRGDG GE+IT N+ I +PL L+ P + EVR EV
Sbjct: 122 KFDGIAVSLLYRDGRLQRGATRGDGATGEDITQNVRTIGSVPLKLSGDNVPAVFEVRGEV 181
Query: 185 LIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN 244
++ + F KLN G + F NPRNAAAG LRQL+P I + L FFA+ VG + G
Sbjct: 182 VMPRAGFAKLNAAAQERGDRLFVNPRNAAAGALRQLDPSITAKRPLVFFAYSVGYVEG-E 240
Query: 245 MPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCL 304
+P +H L+ +K+G + GE ++ G + +Y+ + KR +L Y+IDG+V+K+N
Sbjct: 241 LPPTHFGTLDLLEKLGFVVAGERALAHGAGGCLAYYRDLGEKRADLGYDIDGIVFKVNDY 300
Query: 305 STQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITIT 364
Q +LGF SRAPR+A+A+KF ++E +T + + Q+GRTG +TPVA L+PV + G+T++
Sbjct: 301 GLQNRLGFVSRAPRWAIAHKFPAQEEMTVLNDVEFQVGRTGAVTPVARLEPVFVGGVTVS 360
Query: 365 RATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSK 424
ATLHN EI R ++IGD VVV R+G+VIP+I S +LS RP +K P CP+C S+
Sbjct: 361 NATLHNRDEIERLGVKIGDQVVVRRAGDVIPQIVSVVLSARPQHAKEIVFPANCPVCGSQ 420
Query: 425 IIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVD 484
+ +E +ARC+G + C AQRK ++HF SR AM+I GLG K++E+LV + D
Sbjct: 421 VEVLEGEAVARCTGGLV-CAAQRKEAIKHFVSRTAMDIEGLGDKLVEQLVGLGHIEHIAD 479
Query: 485 LYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFK 544
+Y++ + L ++R+ +K A N++ AI+KSK TT RF++ALGIR VG+ TA+ +A +F
Sbjct: 480 IYRLEHEVLANMERMGDKSAQNVIDAIEKSKSTTLPRFLFALGIREVGQATARNIAQHFG 539
Query: 545 NLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------- 594
L+ + A +E L+ + +G F Q +R I+ L++ G++W
Sbjct: 540 MLKNLMDADQEALVAVDDVGPIVAHHIFDFFQQQGNRAQIALLQEAGVHWPESAPVAAES 599
Query: 595 ----------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKL 632
L+ K G KV +SK T+ +V G G KL KA L
Sbjct: 600 LPLDGKTYVLTGTLETLSRDEAKEKLLALGAKVTGSVSKKTDCVVAGPGAGSKLAKAESL 659
Query: 633 NIKILDEKNFVKIVKGF 649
I++LDE FV ++ F
Sbjct: 660 GIEVLDEAAFVALLDSF 676
>gi|303250616|ref|ZP_07336813.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307252937|ref|ZP_07534825.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|302650604|gb|EFL80763.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306859575|gb|EFM91600.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
Length = 682
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 275/662 (41%), Positives = 406/662 (61%), Gaps = 39/662 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+++L + Y++ DNP++ D +YD+L+ ELK +E ++PE +T DS TQ VG +
Sbjct: 21 LRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQRVGAKPLDGF 80
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAVNLRYEY 137
V H M+SLDN FSDE++ F +R+ E +T++ + + E K DG+AV++ Y
Sbjct: 81 AQVTHEIPMLSLDNAFSDEELDGFLRRM--ESYITEDPHTLAFCCEPKLDGLAVSILYVD 138
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L QA+TRGDG GE+IT+NI I IPL LN+ PP LEVR EV + +K F LN+
Sbjct: 139 GVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKGFEALNER 198
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHSELLNWY 256
G K F NPRNAAAG LRQL+PKI + + L A+G+G + +P++H E L W
Sbjct: 199 ALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATHFERLQWL 258
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ IG+ + E + +G +L+ FY I KR L Y+IDG V K+N + Q++LGF SR+
Sbjct: 259 KSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQLGFISRS 318
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 319 PRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIER 378
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
I IGDTV++ R+G+VIP+I ++ RP ++K + P CP+C S ++ +E +ARC
Sbjct: 379 LGIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTACPVCESAVVRVEGEAVARC 438
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SRKAM+I G+G+K+IE+L+ +V T DL+K+ L+RL
Sbjct: 439 TGGLF-CGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMERELVHTPADLFKLEHTTLMRL 497
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N L +I+K+K TT +RF++ALGIR VGE TA+ LAN+F NL+ + AT EQ
Sbjct: 498 ERMGEKSAQNALNSIEKAKNTTLARFLFALGIRDVGEATAQNLANHFHNLDAIRAATFEQ 557
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------LNNP---------- 598
L + +G ++F +P + ++ L GI+W +NP
Sbjct: 558 LQEVQDVGEVVANRIVRFWQEPHNVTVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTG 617
Query: 599 --------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
+ G KV +S T+YL+ G+K G KL KA +L +K+L E+ F+
Sbjct: 618 TLTQLTRDQAKALLQSFGCKVSGSVSSKTDYLIAGEKAGSKLTKAQELGVKVLTEQEFIA 677
Query: 645 IV 646
+
Sbjct: 678 LT 679
>gi|165976722|ref|YP_001652315.1| NAD-dependent DNA ligase LigA [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|190359223|sp|B0BQN6.1|DNLJ_ACTPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|165876823|gb|ABY69871.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
Length = 682
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 274/662 (41%), Positives = 406/662 (61%), Gaps = 39/662 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+++L + Y++ DNP++ D +YD+L+ ELK +E ++PE +T DS TQ VG +
Sbjct: 21 LRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQRVGAKPLDGF 80
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAVNLRYEY 137
V H M+SLDN FSDE++ F +R+ E +T++ + + E K DG+AV++ Y
Sbjct: 81 AQVTHEIPMLSLDNAFSDEELDGFLRRM--ESYITEDPHTLAFCCEPKLDGLAVSILYVD 138
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L QA+TRGDG GE+IT+NI + IPL LN+ PP LEVR EV + +K F LN+
Sbjct: 139 GVLSQAATRGDGTTGEDITSNIRTVRNIPLKLNMDNPPARLEVRGEVFMPQKGFETLNER 198
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHSELLNWY 256
G K F NPRNAAAG LRQL+PKI + + L A+G+G + +P++H E L W
Sbjct: 199 ALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATHFERLQWL 258
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ IG+ + E + +G +L+ FY I KR L Y+IDG V K+N + Q++LGF SR+
Sbjct: 259 KSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQLGFISRS 318
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 319 PRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIER 378
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
I IGDTV++ R+G+VIP+I ++ RP ++K + P CP+C S ++ +E +ARC
Sbjct: 379 LGIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTACPVCESAVVRVEGEAVARC 438
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SRKAM+I G+G+K+IE+L+ +V T DL+K+ L+RL
Sbjct: 439 TGGLF-CGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMERELVHTPADLFKLEHTTLMRL 497
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N L +I+K+K TT +RF++ALGIR VGE TA+ LAN+F NL+ + AT EQ
Sbjct: 498 ERMGGKSAQNALNSIEKAKNTTLARFLFALGIRDVGEATAQNLANHFHNLDAIRAATFEQ 557
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------LNNP---------- 598
L + +G ++F +P + ++ L GI+W +NP
Sbjct: 558 LQEVQDVGEVVANRIVRFWQEPHNVTVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTG 617
Query: 599 --------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
+ G KV +S T+YL+ G+K G KL KA +L +K+L E+ F+
Sbjct: 618 TLTQLTRDQAKALLQSFGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIA 677
Query: 645 IV 646
+
Sbjct: 678 LT 679
>gi|385873242|gb|AFI91762.1| DNA ligase [Pectobacterium sp. SCC3193]
Length = 681
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 271/678 (39%), Positives = 408/678 (60%), Gaps = 38/678 (5%)
Query: 6 KKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTK 65
K+ + ++ RV EL++ L H Y++ D P I D++YD+L+ ELK +E PEL+T
Sbjct: 3 KEPAEVNTVALRVAELRRVLRHHEYKYHVEDAPEIPDSEYDKLMQELKALEADRPELVTS 62
Query: 66 DSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELK 125
DS TQ VG + V H M+SLDN F +E + F+KRI + LK ++ + ELK
Sbjct: 63 DSPTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDDLTFCCELK 122
Query: 126 FDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVL 185
DG+AV+L YEYG L QA+TRGDG GENIT+NI + IPL L + P +EVR EV
Sbjct: 123 LDGLAVSLLYEYGVLVQAATRGDGTTGENITSNIRTVGAIPLRLEGENIPRRVEVRGEVF 182
Query: 186 IYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM 245
+ F KLN+ G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +
Sbjct: 183 MKHGGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 242
Query: 246 PSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLS 305
P+SH E L ++ GL + + +G ++++FY+++ R L ++IDGVV K++ L+
Sbjct: 243 PASHWERLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSELGFDIDGVVVKVDSLA 302
Query: 306 TQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITR 365
Q++LGF +RAPR+A+A+KF ++E LT ++ + Q+GRTG ITPVA L+PV + G+ ++
Sbjct: 303 LQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSN 362
Query: 366 ATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKI 425
ATLHN EI R +QIGD V+V R+G+VIP+I + S RP + P CP+C S +
Sbjct: 363 ATLHNADEIERLGLQIGDRVIVRRAGDVIPQIVGIVESERPETVQPIVFPVTCPVCGSDV 422
Query: 426 IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDL 485
+E + RC+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL
Sbjct: 423 ERVEGEAVTRCTGGLI-CGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVKTPADL 481
Query: 486 YKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN 545
++++ ++ LDR+ K A N++ A++K+K TT +RF+YALGIR VGE+TA LA +F +
Sbjct: 482 FRLSAGSMTGLDRMGPKSAMNVVNALEKAKSTTLARFLYALGIRDVGESTAANLAAHFGS 541
Query: 546 LECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRD---VGIYW-------- 594
LE +F A E+ LL +P +G F+ + ++ +I +L D + I+W
Sbjct: 542 LEALFAADEDALLAVPDVGKIVAAHVRHFLEEEHNQTVIRELTDPAGINIHWPEVQVVNA 601
Query: 595 --LNNP------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEK 628
+++P G KV +SK T+ ++ G+ G KL K
Sbjct: 602 EEIDSPFAGKTVVLTGSLSILSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAK 661
Query: 629 AIKLNIKILDEKNFVKIV 646
A +L I ++DE ++++
Sbjct: 662 AQELGIAVIDEAEMIRLL 679
>gi|377576659|ref|ZP_09805643.1| DNA ligase [Escherichia hermannii NBRC 105704]
gi|377542691|dbj|GAB50808.1| DNA ligase [Escherichia hermannii NBRC 105704]
Length = 672
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 268/665 (40%), Positives = 404/665 (60%), Gaps = 36/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++T+L+ L H Y++ D P I D +YD+L+ EL+++E ++PEL+T DS TQ VG
Sbjct: 7 KLTDLRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQHPELVTPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F + + FNKR+ + LK T + + ELK DG+AV+L YE
Sbjct: 67 LTAFTQIRHEVPMLSLDNVFDESSFLAFNKRVQDRLKSTDAVTWCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+IT+ I I IPL L + P LEVR EV + + F K+N+
Sbjct: 127 NGLLVRAATRGDGTTGEDITSTIRTIRAIPLKLRGEDIPTRLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L F +GVG L G +P+SH E L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFNCYGVGLLEGGELPASHYERLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL I + ++++FY+++ R L ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 ARWGLPISHRTRICKTPEEVLDFYRQVEADRPQLGFDIDGVVIKVDSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTRDVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA+YF NL+ + +A+ E+
Sbjct: 486 DRMGPKSAQNVVDALEKAKATTFARFLYALGIREVGEATAAGLASYFGNLDALTRASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW--------------------- 594
L +P +G F + +R +I QL D+GI+W
Sbjct: 546 LQKVPDVGIVVATHVYNFFEEESNREVIRQLVEDIGIHWPEPLVIKAEEIDSHFAGKTVV 605
Query: 595 -------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
L+ + K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 LTGSLSQLSRDDAKARLTALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAE 665
Query: 642 FVKIV 646
++++
Sbjct: 666 MIRLL 670
>gi|350560853|ref|ZP_08929692.1| DNA ligase, NAD-dependent [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349780960|gb|EGZ35268.1| DNA ligase, NAD-dependent [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 673
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 246/664 (37%), Positives = 403/664 (60%), Gaps = 37/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV--GL 74
R EL++ + H+ YY+ D+P +SD +YDQL EL+++E ++PEL+ +S TQ V L
Sbjct: 12 RAAELRERIAHHDWRYYVLDDPEVSDAEYDQLFRELQRLEAEHPELVVPESPTQRVSGAL 71
Query: 75 VGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLR 134
GG + V H M+SL+N FS++++ F++R+ L ++Y+AE K DG+A++L
Sbjct: 72 TGGFTA--VRHRLPMLSLNNAFSEDEIRSFDRRVRERLDADAAVDYMAEPKLDGLAISLL 129
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194
Y G L +A+TRGDG GE++T N+ + IPL L+ P+ EVR EV + ++DF +L
Sbjct: 130 YRDGRLVRAATRGDGETGEDVTGNVRTVRAIPLALSGSQWPDEFEVRGEVFMRRRDFERL 189
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N+ G + F NPRNAAAG LRQL+P + ++ L FFA+G G + +P + S +L+
Sbjct: 190 NQRLQDAGERGFMNPRNAAAGSLRQLDPAVTASRPLSFFAYGPGAVGDYPLPETQSAVLD 249
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
W+ +G+ +C E + +SGV+ + +Y+++ +R LPY+IDGVV+K++ Q+++GF +
Sbjct: 250 WFGSLGIPVCPERARVSGVDAALAYYRELAQRRAALPYDIDGVVFKVDAREAQQRIGFVA 309
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+AYKF ++E T++ A++ Q+GRTG +TPVA L+PVL+ G+ ++ ATLHN E+
Sbjct: 310 RAPRWAIAYKFPAEERTTRLVAVDFQVGRTGALTPVARLEPVLVGGVMVSNATLHNMDEV 369
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
RK+++IGD VVV R+G+VIP++ R ++ ++P CP C S++ + +A
Sbjct: 370 ARKDVRIGDRVVVRRAGDVIPEVVGRAGGERDPQTQAIELPAACPECGSRVEQEDGKAVA 429
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+G + C AQR+ L+HF SRKA++I G G+++IE+LV + V +L+ ++ L
Sbjct: 430 RCTGGLV-CPAQRREALRHFVSRKALDIEGFGERLIEQLVASGTVANPAELFALDAGQLE 488
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
+R+ K A N+ A+Q+++ TT +RF+YALGIR VGE TA+ LA +F LE + +A+
Sbjct: 489 VFERIGPKSAQNLERALQQARETTLARFVYALGIREVGEVTARALAAHFGALEPLMQASV 548
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK------------- 601
E+L +I +G + F +P + +I+ LR G++W +
Sbjct: 549 EELESIRDVGPVVARHVASFFAEPHNCEVIAALRAAGVHWSESEPADTGVRPLEGHTYVL 608
Query: 602 -------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +S+ T ++ G PG K +A L + +LDE
Sbjct: 609 TGSLEEMTREQASERLQALGAKVTGNVSRQTTAVIAGASPGSKRARAEALGVPVLDEAAL 668
Query: 643 VKIV 646
+++
Sbjct: 669 RELI 672
>gi|417841323|ref|ZP_12487427.1| DNA ligase [Haemophilus haemolyticus M19501]
gi|341949361|gb|EGT75965.1| DNA ligase [Haemophilus haemolyticus M19501]
Length = 672
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 283/669 (42%), Positives = 402/669 (60%), Gaps = 34/669 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++ L+K L ++ Y++ DNP + D++YD+L +LK +E ++PE LT DS TQ
Sbjct: 1 MTNIQTQIDNLRKTLRQYEYEYHVLDNPTVPDSEYDRLFHQLKALELEHPEFLTSDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGI 129
VG + H M+SLDN FSDE+ F KRI + L L K + + E K DG+
Sbjct: 61 RVGAKPLSGFSQIRHEIPMLSLDNAFSDEEFNAFVKRIEDRLIVLPKPLTFCCEPKLDGL 120
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G L QA+TRGDG GE+IT NI I IPL L PPE LEVR EV +
Sbjct: 121 AVSILYVNGILTQAATRGDGTTGEDITANIRTIRNIPLQLLTDNPPERLEVRGEVFMPHV 180
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LN+Y G K F NPRNAAAG LRQL+P I + L A+G+G G+ +PS+H
Sbjct: 181 GFERLNEYALEHGEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVELPSTH 240
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
L W + IG+ + E + +G N++++FY+ I KR +L Y+IDG V KIN ++ Q +
Sbjct: 241 YARLQWLKSIGIPVNPEIRLCNGTNEVLDFYRDIQNKRRSLGYDIDGTVLKINDIALQNE 300
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF S+APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 301 LGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 360
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R NI IGDTVV+ R+G+VIP+I + RPN++K P CP+C+S+II IE
Sbjct: 361 NGDEIERLNIAIGDTVVIRRAGDVIPQIIGVLHERRPNNAKPIIFPTNCPVCDSQIIRIE 420
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++
Sbjct: 421 GEAVARCTGGLF-CAAQRKEELKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLD 479
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L RL+R+ K A N L +++K+K TT +RFI+ALGIR VGE TA LAN+FK L+ +
Sbjct: 480 LTTLTRLERMGAKSAENALNSLEKAKSTTLARFIFALGIREVGEATALNLANHFKTLDAL 539
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
A EQL +P +G F + + ++ L GI+W
Sbjct: 540 KAADLEQLQQVPDVGEVVANRIFVFWREAHNVAVVEDLIAQGIHWKTVEVKEASENLFKD 599
Query: 595 ----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L T+ G KV +S T++++ G G KL KA +L+I +L
Sbjct: 600 KTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDSAGSKLTKAQELSITVL 659
Query: 638 DEKNFVKIV 646
E+ F++ V
Sbjct: 660 TEEEFLEQV 668
>gi|307261779|ref|ZP_07543445.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
gi|306868597|gb|EFN00408.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 12 str. 1096]
Length = 676
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 275/662 (41%), Positives = 405/662 (61%), Gaps = 39/662 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+++L + Y++ DNP++ D +YD+L+ ELK +E ++PE +T DS TQ VG +
Sbjct: 15 LRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQRVGAKPLDGF 74
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAVNLRYEY 137
V H M+SLDN FSDE++ F +R+ E +T++ + + E K DG+AV++ Y
Sbjct: 75 AQVTHEIPMLSLDNAFSDEELDGFLRRM--ESYITEDPHTLAFCCEPKLDGLAVSILYVD 132
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L QA+TRGDG GE+IT+NI I IPL LN+ PP LEVR EV + +K F LN+
Sbjct: 133 GVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKGFETLNER 192
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHSELLNWY 256
G K F NPRNAAAG LRQL+PKI + + L A+G+G + +P +H E L W
Sbjct: 193 ALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTHFERLQWL 252
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ IG+ + E + +G +L+ FY I KR L Y+IDG V K+N + Q++LGF SR+
Sbjct: 253 KSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQLGFISRS 312
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 313 PRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIER 372
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
I IGDTV++ R+G+VIP+I ++ RP ++K + P CP+C S ++ +E +ARC
Sbjct: 373 LGIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTACPVCESAVVRVEGEAVARC 432
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SRKAM+I G+G+K+IE+L+ +V T DL+K+ L+RL
Sbjct: 433 TGGLF-CGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMERELVHTPADLFKLEHTTLMRL 491
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N L +I+K+K TT +RF++ALGIR VGE TA+ LAN+F NL+ + AT EQ
Sbjct: 492 ERMGEKSAQNALNSIEKAKNTTLARFLFALGIRDVGEATAQNLANHFHNLDAIRAATFEQ 551
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--------NP---------- 598
L + +G ++F +P + ++ L G++W N NP
Sbjct: 552 LQEVQDVGEVVANRIVRFWQEPHNVAVVEDLISQGVHWQNVVQVEIADNPLKGKSVVLTG 611
Query: 599 --------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
+ G KV +S T+YL+ G+K G KL KA +L +K+L E+ F+
Sbjct: 612 TLTQLTRDQAKALLQSFGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIA 671
Query: 645 IV 646
+
Sbjct: 672 LT 673
>gi|337279734|ref|YP_004619206.1| DNA ligase (NAD+) [Ramlibacter tataouinensis TTB310]
gi|334730811|gb|AEG93187.1| Candidate DNA ligase (NAD+) [Ramlibacter tataouinensis TTB310]
Length = 699
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 271/683 (39%), Positives = 416/683 (60%), Gaps = 53/683 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ L++ LH H YY+ D+P I D +YD+LL EL+ +EE++PELLT DS T+ VG
Sbjct: 10 RIDALRELLHHHAHRYYVLDDPEIPDAEYDRLLRELQALEEEHPELLTPDSPTRRVGGKP 69
Query: 77 GENSKYVHHTFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAV 131
E V H M+S+ + F+ R+ EL L + +EY+AELKFDG+AV
Sbjct: 70 LEGFAKVRHKVPMLSIRTETDIEATGARNFDARVRRELGLAEADPPVEYVAELKFDGLAV 129
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
NLRYE+G L QA+TRGDG +GE++T NI I ++PL L + P +LEVR EV + + DF
Sbjct: 130 NLRYEHGRLVQAATRGDGQVGEDVTQNIRTIGQVPLQLQGRDAPAVLEVRGEVYMRRDDF 189
Query: 192 IKLNKY------RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL----R 241
+LN+ R K F NPRNAAAG +RQL+P I + + L F+A+G GE+ +
Sbjct: 190 EELNEQQREKIARGAKNEKTFVNPRNAAAGAVRQLDPAITRQRPLSFYAYGWGEITPPEQ 249
Query: 242 GMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKI 301
G +H ++L + GL + V G ++LI +++++ R LP++IDGVVYK+
Sbjct: 250 GGPAFETHHQVLQALKAWGLPLSSRTRVAQGADELIAYHQEVGRIRDQLPFDIDGVVYKV 309
Query: 302 NCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGI 361
N L+ Q++LGF +R PR+A+A+KF ++E LT +++I++ +GRTG +TPVA L PV + G+
Sbjct: 310 NSLALQRRLGFVTREPRWAVAHKFPAQEQLTTVESIDVYVGRTGKLTPVARLAPVFVGGV 369
Query: 362 TITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPIC 421
T+T ATLHNE E RK++++GDTV+V R+G+VIP++ + ++ R + S F +P+ CP+C
Sbjct: 370 TVTNATLHNEDEARRKDVRMGDTVIVRRAGDVIPEVVAVVVDKRTHASPPFAMPSRCPVC 429
Query: 422 NSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVT 481
S+ + E + RC+G C AQRK L HF+ R+AM+I GLG+K++++LV+ ++ T
Sbjct: 430 GSEAVREEGEVDHRCTGGLF-CGAQRKQALLHFAQRRAMDIEGLGEKLVDQLVDGGVIKT 488
Query: 482 AVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELAN 541
DLY++ +L L+R+ K A N+L +++SK TT RF++ALGIRHVGE+TA++LA
Sbjct: 489 LPDLYRMGLASLTALERMGEKSAQNLLAGLERSKSTTLPRFLFALGIRHVGESTARDLAR 548
Query: 542 YFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLR-----DVGIYW-- 594
+F L + A +QLL +P +G ++ F QP +R ++ QL+ G++W
Sbjct: 549 HFGRLHAIMDAGVDQLLQVPDVGPVVAESIHTFFQQPHNREVVEQLQKPPPDGCGVHWEE 608
Query: 595 ------------------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGK 624
L K G KV +SK T+Y+V G + G
Sbjct: 609 TEPAAAAVLPLAGKTVVLTGTLPTLGREEAKELLEAAGAKVAGSVSKKTSYVVAGAEAGS 668
Query: 625 KLEKAIKLNIKILDEKNFVKIVK 647
KL+KA +L + +LDE +++
Sbjct: 669 KLDKARELGVPVLDEDGLRALLQ 691
>gi|332290231|ref|YP_004421083.1| NAD-dependent DNA ligase LigA [Gallibacterium anatis UMN179]
gi|330433127|gb|AEC18186.1| NAD-dependent DNA ligase LigA [Gallibacterium anatis UMN179]
Length = 671
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 273/669 (40%), Positives = 405/669 (60%), Gaps = 34/669 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
L + +L+ +L H Y++ DNP+I D +YD+++ +LK++E ++PEL+T DS TQ
Sbjct: 1 MDDLQQHIEQLRNDLRYHEYQYHVLDNPVIPDAEYDRMMNQLKRLEAEHPELITDDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK-LTKNIEYIAELKFDGI 129
VG + + H M+SLDN FSDE+ F +RI + L L + E K DG+
Sbjct: 61 RVGAKPANGFQQIRHELPMLSLDNAFSDEEFFAFIRRIEDRLGVLPDPFTFCCEPKLDGL 120
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G L QA+TRGDG GE+IT NI I IPL L PP LEVR EV +
Sbjct: 121 AVSILYVNGKLTQAATRGDGVTGEDITANIRTIRNIPLQLRTATPPARLEVRGEVFMPHD 180
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LN + G K F NPRNAAAG LRQL+P++ ++ L A+G+G G+ +P++H
Sbjct: 181 GFERLNNHALEHGEKTFANPRNAAAGSLRQLDPQVTYHRPLMLNAYGIGIAEGVELPNTH 240
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
+ L W + IG+ + E + +G ++++FY+ I KR +L Y+IDG V K+N + Q++
Sbjct: 241 YDRLQWLKSIGIPVNKEIRLCNGTTEVLDFYRSIAEKRSSLGYDIDGTVLKVNSIPLQEQ 300
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF SRAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 301 LGFISRAPRWAIAYKFPAQEELTILNDVEFQVGRTGAITPVAKLEPVYVAGVTVSNATLH 360
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R +I IGDTV++ R+G+VIP+I + RP D+K P CP+C+S I+ I+
Sbjct: 361 NGDEIARLDIAIGDTVIIRRAGDVIPQIIGVVHDRRPPDAKPIIFPTRCPVCDSAIVRID 420
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G + C AQRK GL+HF SRKAM+I G+G K+IE+LV+ + T VDL+ ++
Sbjct: 421 GEAVARCTGGLV-CEAQRKEGLKHFVSRKAMDIDGVGDKLIEQLVDREYLHTPVDLFTLS 479
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
+ L+ L+R+ K A L +I+K+K TT +RF++ALGIR VGE TA+ LAN+F LE +
Sbjct: 480 KETLMGLERMGEKSAEKALASIEKAKKTTLARFLFALGIREVGEATARNLANHFHTLENI 539
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------LNNPNTK 601
AT EQL + IG I F + +R ++ +L + G+ W +NP +
Sbjct: 540 KNATFEQLQQVQDIGEVVANRIILFWQEQHNRNVVEKLIEQGVTWDDVNATEIADNPLKE 599
Query: 602 ------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
G KV +S T++++ G G KL+KA L +K+L
Sbjct: 600 KTVVLTGTLTQMTRDQAKALLLQLGCKVAGSVSSKTDFVIAGDNAGSKLQKAESLGVKVL 659
Query: 638 DEKNFVKIV 646
E+ F+ ++
Sbjct: 660 TEQQFLDLI 668
>gi|307250556|ref|ZP_07532498.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306857372|gb|EFM89486.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 4 str. M62]
Length = 682
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 274/662 (41%), Positives = 405/662 (61%), Gaps = 39/662 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+++L + Y++ DNP++ D +YD+L+ ELK +E ++PE +T DS TQ VG +
Sbjct: 21 LRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQRVGAKPLDGF 80
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAVNLRYEY 137
V H M+SLDN FSDE++ F +R+ E +T++ + + E K DG+AV++ Y
Sbjct: 81 AQVTHEIPMLSLDNAFSDEELDGFLRRM--ESYITEDPHTLAFCCEPKLDGLAVSILYVD 138
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L QA+TRGDG GE+IT+NI + IPL LN+ PP LEVR EV + +K F LN+
Sbjct: 139 GVLSQAATRGDGTTGEDITSNIRTVRNIPLKLNMDNPPARLEVRGEVFMPQKGFETLNER 198
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHSELLNWY 256
G K F NPRNAAAG LRQL+PKI + + L A+G+G + +P +H E L W
Sbjct: 199 ALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTHFERLQWL 258
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ IG+ + E + +G +L+ FY I KR L Y+IDG V K+N + Q++LGF SR+
Sbjct: 259 KSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTVLKVNDIGLQEQLGFISRS 318
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 319 PRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIER 378
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
I IGDTV++ R+G+VIP+I ++ RP ++K + P CP+C S ++ +E +ARC
Sbjct: 379 LGIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTACPVCESAVVRVEGEAVARC 438
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SRKAM+I G+G+K+IE+L+ +V T DL+K+ L+RL
Sbjct: 439 TGGLF-CGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMERELVHTPADLFKLEHTTLMRL 497
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N L +I+K+K TT +RF++ALGIR VGE TA+ LAN+F NL+ + AT EQ
Sbjct: 498 ERMGEKSAQNALNSIEKAKNTTLARFLFALGIRDVGEATAQNLANHFHNLDAIRAATFEQ 557
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--------NP---------- 598
L + +G ++F +P + ++ L G++W N NP
Sbjct: 558 LQEVQDVGEVVANRIVRFWQEPHNVAVVEDLISQGVHWQNVVQVEIADNPLKGKSVVLTG 617
Query: 599 --------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
+ G KV +S T+YL+ G+K G KL KA +L +K+L E+ F+
Sbjct: 618 TLTQLTRDQAKALLQSFGCKVSGSVSSKTDYLIAGEKAGSKLTKAQELGVKVLTEQEFIA 677
Query: 645 IV 646
+
Sbjct: 678 LT 679
>gi|342903912|ref|ZP_08725714.1| DNA ligase [Haemophilus haemolyticus M21621]
gi|341953921|gb|EGT80415.1| DNA ligase [Haemophilus haemolyticus M21621]
Length = 672
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 282/669 (42%), Positives = 400/669 (59%), Gaps = 34/669 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++ ++K L ++ Y++ DNP + D++YD+L +LK +E ++PE LT DS TQ
Sbjct: 1 MTNIQTQIDNIRKTLRQYEYEYHVLDNPTVPDSEYDRLFHQLKALELEHPEFLTSDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGI 129
VG + H M+SLDN FSDE+ F KRI + L L K + + E K DG+
Sbjct: 61 RVGAKPLSGFSQIRHEIPMLSLDNAFSDEEFNAFVKRIEDRLIVLPKPLTFCCEPKLDGL 120
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G L QA+TRGDG GENIT NI I IPL L PP LEVR EV +
Sbjct: 121 AVSILYVNGILTQAATRGDGTTGENITANIRTIRNIPLQLLTDNPPARLEVRGEVFMPHA 180
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LN+Y G K F NPRNAAAG LRQL+P I + L A+G+G G+ +PS+H
Sbjct: 181 GFERLNEYALEHGEKTFANPRNAAAGSLRQLDPNITSKRPLILNAYGIGIAEGVELPSTH 240
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
L W + IG+ + E + +G N++++FY+ I KR +L Y+IDG V KIN ++ Q +
Sbjct: 241 YARLQWLKSIGIPVNPEIRLCNGTNEVLDFYRDIQNKRSSLGYDIDGTVLKINDIALQNE 300
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF S+APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 301 LGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 360
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R NI IGDTVV+ R+G+VIP+I + RP+++K P CP+C SKII IE
Sbjct: 361 NGDEIERLNIAIGDTVVIRRAGDVIPQIIGVLNERRPDNAKPIIFPTNCPVCGSKIIRIE 420
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++
Sbjct: 421 GEAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLD 479
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L RL+R+ K A N L +++K+K TT +RFI+ALGIR VGE TA LAN+FK L+ +
Sbjct: 480 LTTLTRLERMGAKSAENALNSLEKAKSTTLARFIFALGIREVGEATALNLANHFKTLDAL 539
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
A EQL +P +G F + + ++ L G++W
Sbjct: 540 KAADLEQLQQVPDVGEVVANRIFVFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKD 599
Query: 595 ----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L T+ G KV +S T++++ G G KL KA +LNI +L
Sbjct: 600 KTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLTKAQELNITVL 659
Query: 638 DEKNFVKIV 646
E+ F++ V
Sbjct: 660 TEEEFLEQV 668
>gi|332525978|ref|ZP_08402119.1| DNA ligase (NAD+) [Rubrivivax benzoatilyticus JA2]
gi|332109529|gb|EGJ10452.1| DNA ligase (NAD+) [Rubrivivax benzoatilyticus JA2]
Length = 686
Score = 540 bits (1390), Expect = e-150, Method: Compositional matrix adjust.
Identities = 274/677 (40%), Positives = 408/677 (60%), Gaps = 54/677 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV---- 72
R EL++ L H YY+ D P I D +YD+L EL+ IE ++P+LLT DS TQ +
Sbjct: 9 RAAELRRILSHHAHRYYVLDAPEIPDAEYDRLFQELQAIESEHPDLLTPDSPTQRIIGQV 68
Query: 73 --GLVGGENSKYVHHTFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELK 125
GLV V H M+S+ + + F+ R+ EL+L + +EY AELK
Sbjct: 69 LPGLV------PVRHAVAMLSIRTETDTTAAGAEAFDARVRRELELGDDAPPVEYAAELK 122
Query: 126 FDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVL 185
FDG+A+NLRY G L QA+TRGDG GE++T NI I +IPL L PP +LEVR EV
Sbjct: 123 FDGLAINLRYVAGLLVQAATRGDGETGEDVTHNIRTIGQIPLRLFGTAPP-VLEVRGEVY 181
Query: 186 IYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM 245
+ + DF +LN+ + G K F NPRN AAG +RQL+ + +K L F+A+G+GE++G
Sbjct: 182 MRRDDFERLNERQREKGAKTFINPRNTAAGAVRQLDSRSLADKRLSFYAYGLGEVQGWEQ 241
Query: 246 PSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLS 305
P +HS L+ GL + GE +V+ G + L+ F+++I R LP++IDGVVYK+N ++
Sbjct: 242 PPTHSGTLDALAAFGLPVNGERAVVQGADGLVAFHRRIAAARDALPFDIDGVVYKVNDIA 301
Query: 306 TQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITR 365
QK+LGF +R PR+A+A+K+ ++E +T++ AI IQ+GRTG +TPVA L+PV + G T++
Sbjct: 302 LQKRLGFVTREPRWAVAHKYPAQEQMTRLNAIEIQVGRTGKLTPVAKLEPVFVGGTTVSN 361
Query: 366 ATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKI 425
ATLHN E+ RK +++GD V+V R+G+VIP++ + R F++P CP+C S +
Sbjct: 362 ATLHNLFELRRKGVRVGDDVIVRRAGDVIPEVVGRVPGERAGYVPNFRMPRQCPVCGSAV 421
Query: 426 IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDL 485
+ RCSG C AQRK L HF+ R+AM+I GLG K++++LV+ ++ T +L
Sbjct: 422 ARERGGIDHRCSGGLF-CAAQRKQALLHFAGRRAMDIEGLGDKLVDQLVDGGLIRTLPEL 480
Query: 486 YKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN 545
Y + L L+R++ K A N++ A+ +SK TT +RF+YALGIR VGE TAK+LA +F
Sbjct: 481 YTLGVAKLSALERMAEKSAANLVAALDRSKQTTLARFLYALGIRQVGEATAKDLARHFGG 540
Query: 546 LECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------- 594
L+ + A+ EQLL + +G ++ F QP +R ++ QLR GI W
Sbjct: 541 LDRVMDASVEQLLEVRDVGPIVAQSIRTFFEQPHNREVVEQLRAAGIRWDEHEGAAVANA 600
Query: 595 ------------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAI 630
L+ K GGKV +SK T+Y+V G++ G KL+KA
Sbjct: 601 AALPLAGKTLVLTGTLPTLSREQAKEMIEAAGGKVAGSVSKKTHYVVAGEEAGSKLDKAR 660
Query: 631 KLNIKILDEKNFVKIVK 647
+L I++LDE ++++
Sbjct: 661 ELGIEVLDEDGLRRLLQ 677
>gi|386818257|ref|ZP_10105475.1| DNA ligase [Thiothrix nivea DSM 5205]
gi|386422833|gb|EIJ36668.1| DNA ligase [Thiothrix nivea DSM 5205]
Length = 672
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 265/664 (39%), Positives = 402/664 (60%), Gaps = 34/664 (5%)
Query: 7 KKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKD 66
K++ F++ ++ +L+++L HN YY+ D+P I D +YD+L EL+ +E ++P+L+T D
Sbjct: 2 KEVEFTEQ--QMEKLREQLRYHNHRYYVLDDPEIPDVEYDRLFRELQALEAEHPQLVTPD 59
Query: 67 SLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKF 126
S TQ VG + H M+SL N FSDE+++ F+KRI + LK IEY+AE K
Sbjct: 60 SPTQRVGAAPLNEFGEIRHAIPMLSLGNVFSDEELLAFDKRIHDRLKSDDEIEYVAEPKL 119
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+A++L YE G +A+TRGDG GE++T N+ I +PL L + P +LEVR E+ +
Sbjct: 120 DGLAISLVYENGIFTRAATRGDGETGEDVTQNVRTIEAVPLRLLGEGWPSVLEVRGEIYM 179
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
K F LN+ + G K F NPRNAAAG LR L+ +I + L F + VG++ G MP
Sbjct: 180 PKAGFNALNERLRNEGTKTFVNPRNAAAGSLRVLDSRITAQRPLTIFCYAVGQVEGGEMP 239
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
++H +L G +C E V+ G + + FY++I KR LPY+IDGVVYK+N ++
Sbjct: 240 TTHYAILRQLATWGFRVCPEIRVVQGAHGCLGFYREIGAKRDRLPYDIDGVVYKVNAIAL 299
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q+ LGF SRAPR+A A+KF ++E T ++ + Q+GRTG +TPVA LKPV + G+T++ A
Sbjct: 300 QQDLGFVSRAPRWATAHKFPAQEETTVLEDVEFQVGRTGALTPVARLKPVFVGGVTVSNA 359
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKII 426
TLHN EI RK+++IGDTV+V R+G+VIP++ I+ RP +++ ++P CP+C S +
Sbjct: 360 TLHNMDEIERKDVRIGDTVIVRRAGDVIPEVARVIVERRPQNARQIEMPTHCPVCGSDVQ 419
Query: 427 YIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY 486
+ + RC+G + C AQ K ++HF+SRKAMNI GLG K++E+ ++ DLY
Sbjct: 420 RPDGEAVFRCTGG-LYCPAQVKEAIKHFASRKAMNIDGLGDKLVEQFFEQGLIRHVDDLY 478
Query: 487 KINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546
++ + + L+R+ +K A+N++ A++KSK TT RFI+ALGIR VGE TAK LA +F +L
Sbjct: 479 RLQAEQVAALERMGDKSADNLVKALEKSKATTLERFIFALGIREVGEATAKTLARHFGSL 538
Query: 547 ECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN---------- 596
E + A EE L +P +G +F + +R I LR++G++W N
Sbjct: 539 ETLQTAKEETLKRVPDVGPVVAANIAQFFGEAHNRDTIQHLRELGVHWQNYAAQPPEALP 598
Query: 597 ---------------------NPNTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIK 635
+ G KV +SK T L+ G+ G KL+KA L +
Sbjct: 599 LTGKTYVITGTLSRSRDEIKVDLEALGAKVAGSVSKKTTALIAGENAGSKLDKAQSLGVA 658
Query: 636 ILDE 639
++ E
Sbjct: 659 VIGE 662
>gi|417846030|ref|ZP_12492045.1| DNA ligase [Haemophilus haemolyticus M21639]
gi|341953737|gb|EGT80239.1| DNA ligase [Haemophilus haemolyticus M21639]
Length = 674
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 281/667 (42%), Positives = 400/667 (59%), Gaps = 34/667 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++ L+K L ++ Y++ DNP + D++YD+L +LK +E ++PE +T DS TQ
Sbjct: 3 MTNIQTQIDNLRKTLRQYEYEYHVLDNPTVPDSEYDRLFHQLKALELEHPEFITSDSPTQ 62
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK-LTKNIEYIAELKFDGI 129
VG + H M+SLDN FSDE+ F KRI + L L K + + E K DG+
Sbjct: 63 RVGAKPLSGFSQIRHEIPMLSLDNAFSDEEFNAFVKRIEDRLIILPKPLTFCCEPKLDGL 122
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G L QA+TRGDG GE+IT NI I IPL L PP LEVR EV +
Sbjct: 123 AVSILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLQLLTDNPPARLEVRGEVFMPHA 182
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LNKY G K F NPRNAAAG LRQL+P I + L A+G+G G+ +PS+H
Sbjct: 183 GFERLNKYALEHGEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGIELPSTH 242
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
L W + IG+ + E + +G N++++FY+ I KR +L Y+IDG V KIN ++ Q +
Sbjct: 243 YARLQWLKSIGIPVNPEIRLCNGTNEVLDFYRDIQNKRSSLGYDIDGTVLKINDIALQNE 302
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF S+APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV I G+T++ ATLH
Sbjct: 303 LGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFIAGVTVSNATLH 362
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R NI IGDTVV+ R+G+VIP+I + RPN++K P CP+C+S+II IE
Sbjct: 363 NGDEIERLNIAIGDTVVIRRAGDVIPQIIGVLHERRPNNAKPIIFPTNCPVCDSQIIRIE 422
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++
Sbjct: 423 GEAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPTDLFKLD 481
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L RL+R+ K A N L +++K+K TT +RFI+ALGIR VGE TA LAN+FK L+ +
Sbjct: 482 LTTLTRLERMGAKSAENALNSLEKAKRTTLARFIFALGIREVGEATALNLANHFKTLDAL 541
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
A E+L +P +G F + + ++ L G++W
Sbjct: 542 KAADLEELQQVPDVGEVVANRIFVFWREAHNVAVVEDLIAQGVHWETVEVKEVSENLFKD 601
Query: 595 ----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L T+ G KV +S T++++ G G KL KA +LNI +L
Sbjct: 602 KTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNIPVL 661
Query: 638 DEKNFVK 644
E+ F++
Sbjct: 662 TEEEFLE 668
>gi|238756322|ref|ZP_04617636.1| DNA ligase [Yersinia ruckeri ATCC 29473]
gi|238705475|gb|EEP97878.1| DNA ligase [Yersinia ruckeri ATCC 29473]
Length = 674
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 270/664 (40%), Positives = 402/664 (60%), Gaps = 36/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P I D +YD+L+ EL+++E ++PEL+T DS TQ VG
Sbjct: 7 QINQLRASLRHHEHQYHVLDAPEIPDAEYDRLMGELRELEAQHPELITADSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SLDN F +E + F+KR+ + LK + + + ELK DG+AV+L YE
Sbjct: 67 LDAFEPVRHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAEPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT N+ IH IPL L P +EVR EV + + F +LN
Sbjct: 127 NGELIRAATRGDGTTGENITANVRTIHAIPLRLQGDNIPRRVEVRGEVFMPQAGFEQLND 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG + G +PSSH E L +
Sbjct: 187 DARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLVDGGELPSSHFERLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + +GV+++I FY ++ R +L ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 KAWGLPVSERVQRCTGVDQVIAFYHQVEQDRAHLGFDIDGVVIKVDALDLQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T+++ + Q+GRTG ITPVA L+PVL+ G+ ++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQMTQVREVEFQVGRTGAITPVARLEPVLVAGVMVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIP+I ++ RP D++ P CP+C S I IE +ARC
Sbjct: 367 LGLRIGDTVMVRRAGDVIPQIVGVVIDERPADAREIIFPEHCPVCGSDIERIEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG C AQRK L+HF SR+A+++ G+G K+IE+LV V DL+ ++ L L
Sbjct: 427 SGGLF-CAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKEYVHNPADLFNLSAGILTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F+ LE + A E
Sbjct: 486 DRMGPKSAQNLVAALEKAKQTTFARFLYALGIREVGEATAAHLAAHFRTLENLRAADVEA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G K + F+++ ++ +I QL V I W +++P
Sbjct: 546 LKAVPDVGEVVAKHVLNFLSEEHNQQVIQQLEQV-ISWPEPQLIIATEIDSPFAGKTVVL 604
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 605 TGSLTILSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIQVIDEAEM 664
Query: 643 VKIV 646
++++
Sbjct: 665 IRLL 668
>gi|307257368|ref|ZP_07539138.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
gi|306864218|gb|EFM96131.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
Length = 682
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 275/662 (41%), Positives = 405/662 (61%), Gaps = 39/662 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+++L + Y++ DNP++ D +YD+L+ ELK +E ++PE +T DS TQ VG +
Sbjct: 21 LRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQRVGAKPLDGF 80
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAVNLRYEY 137
V H M+SLDN FSDE++ F +R+ E +T++ + + E K DG+AV++ Y
Sbjct: 81 AQVTHEIPMLSLDNAFSDEELDGFLRRM--ESYITEDPHTLAFCCEPKLDGLAVSILYVD 138
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L QA+TRGDG GE+IT+NI I IPL LN+ PP LEVR EV + +K F LN+
Sbjct: 139 GVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKGFEALNER 198
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHSELLNWY 256
G K F NPRNAAAG LRQL+PKI + + L A+G+G + +P +H E L W
Sbjct: 199 ALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTHFERLQWL 258
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ IG+ + E + +G +L+ FY I KR L Y+IDG V K+N + Q++LGF SR+
Sbjct: 259 KSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGAVLKVNDIGLQEQLGFISRS 318
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 319 PRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIER 378
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
I IGDTV++ R+G+VIP+I ++ RP ++K + P CP+C S ++ +E +ARC
Sbjct: 379 LGIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTACPVCESAVVRVEGEAVARC 438
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SRKAM+I G+G+K+IE+L+ +V T DL+K+ L+RL
Sbjct: 439 TGGLF-CGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMERELVHTPADLFKLEHTTLMRL 497
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N L +I+K+K TT +RF++ALGIR VGE TA+ LAN+F NL+ + AT EQ
Sbjct: 498 ERMGGKSAQNALNSIEKAKNTTLARFLFALGIRDVGEATAQNLANHFHNLDAIRAATFEQ 557
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--------NP---------- 598
L + +G ++F +P + ++ L G++W N NP
Sbjct: 558 LQEVQDVGEVVANRIVRFWQEPHNVAVVEDLISQGVHWQNVIQVEIADNPLKGKSVVLTG 617
Query: 599 --------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
+ G KV +S T+YL+ G+K G KL KA +L +K+L E+ F+
Sbjct: 618 TLTQLTRDQAKALLQSFGCKVSGSVSSKTDYLIAGEKAGSKLVKAQELGVKVLTEQEFIA 677
Query: 645 IV 646
+
Sbjct: 678 LT 679
>gi|343494175|ref|ZP_08732448.1| NAD-dependent DNA ligase LigA [Vibrio nigripulchritudo ATCC 27043]
gi|342825503|gb|EGU59991.1| NAD-dependent DNA ligase LigA [Vibrio nigripulchritudo ATCC 27043]
Length = 671
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 275/661 (41%), Positives = 405/661 (61%), Gaps = 34/661 (5%)
Query: 19 TELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGE 78
ELK+ LH H + YY+ D+P+I D +YD+L+ +L +IEE+ P+ +T DS +Q VG +
Sbjct: 10 AELKQTLHHHAVKYYVEDSPVIPDAEYDRLMRQLLEIEEQNPDWVTVDSPSQRVGGPALD 69
Query: 79 NSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYG 138
+ V H M+SLDN F+DE++ F +R T+ T + E K DG+AV+L YE G
Sbjct: 70 SFTSVAHEIPMLSLDNAFNDEEIEGFYRRATDRATGTDIQTFSCEPKLDGLAVSLLYENG 129
Query: 139 YLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYR 198
L QA+TRGDG GENIT N+ I+ IPL+L + P +EVR EV + K F K+N+
Sbjct: 130 VLVQAATRGDGATGENITENVRTINAIPLILQGEGWPTRIEVRGEVFMPKAGFDKMNEEA 189
Query: 199 YHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQK 258
GLK F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH E +
Sbjct: 190 LKKGLKPFVNPRNAAAGSLRQLDSKITATRPLSFYAYSVGVVEGGELSNSHYERFLQLKS 249
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL +C E + G+ + E+YK I KR +LPYEIDGVV KI+ ++ Q++LGF +RAPR
Sbjct: 250 WGLPMCPETKQVQGLKDVFEYYKDILEKRDSLPYEIDGVVIKIDDIAIQEQLGFVARAPR 309
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ A+LHN EI R
Sbjct: 310 WAIAYKFPAQEEITVLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNASLHNADEIERLG 369
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
++IGD+V++ R+G+VIP++T IL RP ++ P CP+C S + +E + RC+G
Sbjct: 370 VKIGDSVIIRRAGDVIPQVTGVILERRPENAGEIVYPTACPVCESDVERLEGEAVTRCTG 429
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
I C AQRK L+HF SRKA+++ GLG+K+IE+LV+ +V T DL+K++ + LDR
Sbjct: 430 GLI-CQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDREMVETPADLFKLSAGVITVLDR 488
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N++ A+ KSK TT RF+Y+LGIR VGE TA LAN+FK LE + +A++EQL+
Sbjct: 489 MGPKSAQNVVDALNKSKQTTLPRFLYSLGIREVGEATAANLANHFKTLEAIQEASKEQLI 548
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------ 594
+ +G +F + ++++LR+ G++W
Sbjct: 549 EVNDVGEVVANHIKRFFEAESNLEVVAKLREFGVHWEDITQQSSDKPQLLEGKTVVITGS 608
Query: 595 ---LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
LN K G KV +SK T+ L G+ G KL KA L +++ DE+ ++I
Sbjct: 609 FSKLNRNEAKAMLQELGAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGVEVKDEEALIEI 668
Query: 646 V 646
+
Sbjct: 669 L 669
>gi|190150622|ref|YP_001969147.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
gi|307263969|ref|ZP_07545570.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
gi|254781246|sp|B3H275.1|DNLJ_ACTP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|189915753|gb|ACE62005.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
gi|306870658|gb|EFN02401.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 13 str. N273]
Length = 682
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 275/662 (41%), Positives = 406/662 (61%), Gaps = 39/662 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+++L + Y++ DNP++ D +YD+L+ ELK +E ++PE +T DS TQ VG +
Sbjct: 21 LRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQRVGAKPLDGF 80
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAVNLRYEY 137
V H M+SLDN FSDE++ F +R+ E +T++ + + E K DG+AV++ Y
Sbjct: 81 AQVTHEIPMLSLDNAFSDEELDGFLRRM--ESYITEDPHTLAFCCEPKLDGLAVSILYVD 138
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L QA+TRGDG+ GE+IT+NI I IPL LN+ PP LEVR EV + +K F LN+
Sbjct: 139 GVLNQAATRGDGSTGEDITSNIRTIRNIPLKLNMDNPPARLEVRGEVFMPQKGFEALNER 198
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHSELLNWY 256
G K F NPRNAAAG LRQL+PKI + + L A+G+G + +P +H E L W
Sbjct: 199 ALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTHFERLQWL 258
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ IG+ + E + +G +L+ FY I KR L Y+IDG V K+N + Q++LGF SR+
Sbjct: 259 KSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGAVLKVNDIGLQEQLGFISRS 318
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 319 PRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIER 378
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
I IGDTV++ R+G+VIP+I ++ RP ++K + P CP+C S ++ +E +ARC
Sbjct: 379 LGIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTACPVCESAVVRVEGEAVARC 438
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SRKAM+I G+G+K+IE+L+ +V T DL+K+ L+RL
Sbjct: 439 TGGLF-CGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMERELVHTPADLFKLEHTTLMRL 497
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N L +I+K+K TT +RF++ALGIR VGE TA+ LAN+F NL+ + AT EQ
Sbjct: 498 ERMGGKSAQNALNSIEKAKNTTLARFLFALGIRDVGEATAQNLANHFHNLDAIRAATFEQ 557
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------LNNP---------- 598
L + +G ++F +P + ++ L GI+W +NP
Sbjct: 558 LQEVQDVGEVVANRIVRFWQEPHNVTVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTG 617
Query: 599 --------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
+ G KV +S T+YL+ G+K G KL KA +L +K+L E+ F+
Sbjct: 618 TLTQLTRDQAKALLQSFGCKVSGSVSSKTDYLIAGEKAGSKLTKAQELGVKVLTEQEFIA 677
Query: 645 IV 646
+
Sbjct: 678 LT 679
>gi|307246220|ref|ZP_07528301.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|307255203|ref|ZP_07537019.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307259638|ref|ZP_07541362.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
gi|306852829|gb|EFM85053.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|306861831|gb|EFM93809.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306866283|gb|EFM98147.1| DNA ligase [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
Length = 682
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 274/662 (41%), Positives = 405/662 (61%), Gaps = 39/662 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+++L + Y++ DNP++ D +YD+L+ ELK +E ++PE +T DS TQ VG +
Sbjct: 21 LRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHPEWITADSPTQRVGAKPLDGF 80
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAVNLRYEY 137
V H M+SLDN FSDE++ F +R+ E +T++ + + E K DG+AV++ Y
Sbjct: 81 AQVTHEIPMLSLDNAFSDEELDGFLRRM--ESYITEDPHTLAFCCEPKLDGLAVSILYVD 138
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L QA+TRGDG GE+IT+NI + IPL LN+ PP LEVR EV + +K F LN+
Sbjct: 139 GVLSQAATRGDGTTGEDITSNIRTVRNIPLKLNMDNPPARLEVRGEVFMPQKGFEALNER 198
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHSELLNWY 256
G K F NPRNAAAG LRQL+PKI + + L A+G+G + +P +H E L W
Sbjct: 199 ALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPVTHFERLQWL 258
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ IG+ + E + +G +L+ FY I KR L Y+IDG V K+N + Q++LGF SR+
Sbjct: 259 KSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGAVLKVNDIGLQEQLGFISRS 318
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 319 PRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIER 378
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
I IGDTV++ R+G+VIP+I ++ RP ++K + P CP+C S ++ +E +ARC
Sbjct: 379 LGIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTACPVCESAVVRVEGEAVARC 438
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SRKAM+I G+G+K+IE+L+ +V T DL+K+ L+RL
Sbjct: 439 TGGLF-CGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMERELVHTPADLFKLEHTTLMRL 497
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N L +I+K+K TT +RF++ALGIR VGE TA+ LAN+F NL+ + AT EQ
Sbjct: 498 ERMGGKSAQNALNSIEKAKNTTLARFLFALGIRDVGEATAQNLANHFHNLDAIRAATFEQ 557
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------LNNP---------- 598
L + +G ++F +P + ++ L GI+W +NP
Sbjct: 558 LQEVQDVGEVVANRIVRFWQEPHNVTVVEDLISQGIHWQDVVQVEIADNPLKGKSVVLTG 617
Query: 599 --------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
+ G KV +S T+YL+ G+K G KL KA +L +K+L E+ F+
Sbjct: 618 TLTQLTRDQAKALLQSFGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLTEQEFIA 677
Query: 645 IV 646
+
Sbjct: 678 LT 679
>gi|383758267|ref|YP_005437252.1| NAD-dependent DNA ligase LigA [Rubrivivax gelatinosus IL144]
gi|381378936|dbj|BAL95753.1| NAD-dependent DNA ligase LigA [Rubrivivax gelatinosus IL144]
Length = 694
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 280/679 (41%), Positives = 413/679 (60%), Gaps = 54/679 (7%)
Query: 15 SFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV-- 72
+ R L++ L H YY+ D P I D +YD+L EL+ IE +PELLT DS TQ +
Sbjct: 7 AARAEALRRLLAHHAHRYYVLDAPEIPDAEYDRLFQELQAIEADHPELLTPDSPTQRIIG 66
Query: 73 ----GLVGGENSKYVHHTFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAE 123
GLV V H M+S+ + + F+ R+ EL+L ++ +EY AE
Sbjct: 67 QVLPGLV------PVRHVVPMLSIRTETDTTAAGAAAFDARVRRELELGEDAPPVEYAAE 120
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A+NLRY G L QA+TRGDG GE++T NI I +IPL L + PP +LEVR E
Sbjct: 121 LKFDGLAINLRYVAGLLVQAATRGDGETGEDVTHNIRTIGQIPLRLFGEAPP-VLEVRGE 179
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
V + + DF +LN+ + G + F NPRN AAG +RQL+ + +K L F+A+G+GE++G
Sbjct: 180 VYMRRDDFERLNERQREKGARTFINPRNTAAGAVRQLDSRSLADKRLSFYAYGLGEVQGW 239
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
P++HS L+ GL + GE +V+ G + L+ F+++I R LP++IDGVVYK+N
Sbjct: 240 QQPATHSATLDALAAFGLPVNGERAVVQGADGLVAFHQRIAAARDRLPFDIDGVVYKVND 299
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
++ QK+LGF +R PR+A+A+K+ ++E +T++ AI IQ+GRTG +TPVA L+PV + G T+
Sbjct: 300 IALQKRLGFVTREPRWAVAHKYPAQEQMTRLNAIEIQVGRTGKLTPVAKLEPVFVGGTTV 359
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
+ ATLHN E+ RK +++GDTVVV R+G+VIP++ + R F++P CP+C S
Sbjct: 360 SNATLHNLFELRRKGVRVGDTVVVRRAGDVIPEVVGRVPGERAGYVPNFRMPRQCPVCGS 419
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
+ + RCSG C AQRK L HF+ R+AM+I GLG K++++LV+A I+ T
Sbjct: 420 AVARERGGIDHRCSGGLF-CAAQRKQALLHFAGRRAMDIEGLGDKLVDQLVDAGIIRTLP 478
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
+LY + L LDR+++K A N++ A++KSK TT +RF+YALGIR VGE TAK+LA +F
Sbjct: 479 ELYTLGVLKLSALDRMADKSAANLVAALEKSKQTTLARFLYALGIRQVGEATAKDLARHF 538
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------- 594
+L+ + A+ EQLL + +G ++ F QP +R ++ QLR GI W
Sbjct: 539 GSLDRVMDASVEQLLEVRDVGPIVAQSIRTFFEQPHNREVVEQLRAAGIRWDEHEGAALA 598
Query: 595 --------------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEK 628
L+ K GGKV +SK T+Y+V G++ G KLEK
Sbjct: 599 NVAALPLAGKTLVLTGTLPTLSREQAKEIIEAAGGKVAGSVSKKTHYVVAGEEAGSKLEK 658
Query: 629 AIKLNIKILDEKNFVKIVK 647
A +L I +LDE +++
Sbjct: 659 ARELGITVLDEDGLKALIE 677
>gi|387769291|ref|ZP_10125555.1| DNA ligase (NAD+) [Pasteurella bettyae CCUG 2042]
gi|386906924|gb|EIJ71645.1| DNA ligase (NAD+) [Pasteurella bettyae CCUG 2042]
Length = 672
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 275/672 (40%), Positives = 404/672 (60%), Gaps = 34/672 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ ++ ++ +L+++L H Y++ DN I D++YD+L +LK +E++YPEL+T DS TQ
Sbjct: 1 MTDINQQIKQLREQLRYHEYQYHVLDNSQIPDSEYDRLFHQLKALEQQYPELVTADSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK-LTKNIEYIAELKFDGI 129
VG + H M+SLDN FSDE+ F KRI + L L + + E K DG+
Sbjct: 61 RVGAKPLSGFAQITHELPMLSLDNAFSDEEFYAFVKRIQDRLVVLPDPLTFCCEPKLDGL 120
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G L QA+TRGDG GE+IT NI I IPL L +PP LEVR EV + +
Sbjct: 121 AVSILYVNGVLTQAATRGDGTTGEDITLNIRTIRNIPLQLLTDHPPARLEVRGEVFMPQD 180
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LN+ G K F NPRNAAAG LRQL+PKI + L A+ +G G+ +P +
Sbjct: 181 GFNRLNERALEHGEKTFANPRNAAAGSLRQLDPKITSQRPLVLNAYSIGIAEGVELPPTQ 240
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
E L W + IG+ + E + GV+ ++ FY+ I R L Y+IDG V KIN ++ Q++
Sbjct: 241 YERLQWLKSIGIPVNPEIRLCHGVDDVLGFYRHIQEVRPTLGYDIDGTVLKINDIALQQQ 300
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF S+APR+A+AYKF ++E +T +K + Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 301 LGFISKAPRWAIAYKFPAQEEMTVLKDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 360
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R +I IGDTV+V R+G+VIP+I + RP D++ P+ CP+C S+I+ IE
Sbjct: 361 NGDEIARLDIAIGDTVIVRRAGDVIPQIIGVVHDRRPMDAQSIIFPSECPVCGSQIVRIE 420
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G C AQRK L+HF SR+AM+I G+G K+IE+LV+ ++ T DL+K++
Sbjct: 421 GEAVARCTGGLF-CDAQRKEALKHFVSRRAMDIDGVGAKLIEQLVDRELIHTPADLFKLD 479
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L+RL+R+ K A+N L +++++K TT SRFI+ALGIR VGE TA+ LANYFK LE +
Sbjct: 480 LFTLMRLERMGAKSADNALTSLERAKNTTLSRFIFALGIRDVGEATARSLANYFKTLEAL 539
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--------NP--- 598
A+ EQL +P +G F + + +++ L G++W NP
Sbjct: 540 QVASLEQLQEVPDVGEVVANRIYVFWREQHNLDVVNDLIQQGVHWETVEVKEVGENPFKD 599
Query: 599 ---------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
G KV +S T++++ G G KL KA + ++++
Sbjct: 600 KTVVLTGTLTQMGRNEAKELLQQLGAKVAGSVSAKTHFVIAGDNAGSKLAKAQEFGVQVM 659
Query: 638 DEKNFVKIVKGF 649
E F++IV F
Sbjct: 660 TENEFLEIVNTF 671
>gi|388257401|ref|ZP_10134580.1| DNA ligase, NAD-dependent [Cellvibrio sp. BR]
gi|387938568|gb|EIK45120.1| DNA ligase, NAD-dependent [Cellvibrio sp. BR]
Length = 680
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 270/662 (40%), Positives = 402/662 (60%), Gaps = 33/662 (4%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ +L++E++ H+ YY D+P I+D YD+L+ L+++E ++P+ +T DS TQ VG
Sbjct: 14 IQQLRQEINFHSYRYYALDDPQITDADYDRLMQRLRELELQFPDSVTPDSPTQRVGAAPL 73
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
+ V H M+SLDN FSDED++ FN+R+ + LK T +IEY ELK DGIAV+L Y
Sbjct: 74 SAFQTVIHEMPMLSLDNAFSDEDLLAFNQRVQDRLKSTGDIEYACELKLDGIAVSLLYRD 133
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L + +TRGDG GE+IT N+ I IPL L+ + P +LEVR E+ + K F LN+
Sbjct: 134 GVLVRGATRGDGTNGEDITQNVRTIKSIPLRLHGEGYPVVLEVRGEIYMPKAGFEALNEK 193
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
K F NPRNAAAG LRQL+P+I ++ L A+ VG + G +P +HS L +
Sbjct: 194 ARGASEKLFVNPRNAAAGSLRQLDPRITASRPLEMCAYSVGLVDGGQLPETHSGTLTALK 253
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
G E V + + ++FY++I ++R L Y+IDG+V+K+N Q+KLGF SRAP
Sbjct: 254 NWGFLTNRETQVAKNIQEAMDFYRRIGLRRDGLAYDIDGIVFKVNSRELQEKLGFISRAP 313
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+AYKF ++E T + + Q+GRTG +TPVA L+PV + G+T++ ATLHN EI R
Sbjct: 314 RWAIAYKFPAQEESTLLLDVEFQVGRTGAVTPVARLQPVFVGGVTVSNATLHNRDEINRL 373
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
I+IGDTV+V R+G+VIP+I + S R D++ P CP+C S + + +ARCS
Sbjct: 374 GIKIGDTVIVRRAGDVIPQIVQVVESKRTPDARDIIFPVSCPVCGSPVETVADEAVARCS 433
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G + C AQRK ++HF+SRKAMN+ GLG K++E+LV+ +V D+Y ++ + L ++
Sbjct: 434 GGLV-CAAQRKEAIKHFASRKAMNVEGLGDKLVEQLVDLGLVNNLADIYSLSREQLSAME 492
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+ K A+NIL A++ SK TT ++FIYALGIR VGE TA+ ANYF + E + A +E L
Sbjct: 493 RMGEKSADNILSALETSKKTTLAKFIYALGIREVGEATARNFANYFGSFEALAAADQETL 552
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------------------- 594
+P +G +F Q + + +S LR+ GI+W
Sbjct: 553 QKVPDVGPVVAHFVAEFFAQECNIIAVSALRNHGIHWDNIDVVSPEELPLAGLTYVLTGT 612
Query: 595 ---LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
L+ + K G KV +S T+Y+V G G KL KA +L +K++DE +++
Sbjct: 613 LESLSRDDAKAHLLALGAKVAGSVSAKTDYVVAGPGAGSKLAKAEELGLKVMDEAGLLEL 672
Query: 646 VK 647
++
Sbjct: 673 LQ 674
>gi|416051975|ref|ZP_11577950.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
serotype e str. SC1083]
gi|347992586|gb|EGY33978.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
serotype e str. SC1083]
Length = 671
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 273/660 (41%), Positives = 391/660 (59%), Gaps = 34/660 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+K L H Y++ D+P I D++YD+L +LK +E+++P L+T DS TQ VG
Sbjct: 8 QIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPALVTADSPTQRVGARP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-KNIEYIAELKFDGIAVNLRY 135
+ H M+SLDN FSDE+ F KRI + L L + + + E K DG+AV++ Y
Sbjct: 68 LSEFAQIRHEIPMLSLDNAFSDEEFFAFVKRIQDRLALVPEPLTFCCEPKLDGLAVSILY 127
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
G L QA+TRGDG GE+IT NI I IPL L PP LEVR EV + F +LN
Sbjct: 128 VNGVLSQAATRGDGTTGEDITQNIRTIRNIPLQLLADNPPARLEVRGEVFMPHAGFERLN 187
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
+ G K F NPRNAAAG LRQL+PKI + L A+ +G G+ +P +H E L W
Sbjct: 188 ERALEHGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYSIGIAEGVELPPTHFERLQW 247
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ +G+ + E + G+ ++ FY+ I KR +L Y+IDG V KIN ++ Q++LGF S+
Sbjct: 248 LKSVGIPVNNEIQLCDGIENVLNFYRTIMAKRSSLGYDIDGAVLKINDIALQQRLGFISK 307
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI
Sbjct: 308 APRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTVSNATLHNGDEIA 367
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
R I IGDTV++ R+G+VIP+I RP D++ P CP+C+S I+ IE +AR
Sbjct: 368 RLTIAIGDTVIIRRAGDVIPQIIGVAHDRRPADARQIVFPTHCPVCSSLIVRIEGEAVAR 427
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++ L R
Sbjct: 428 CTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLDLTTLTR 486
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L+R+ K A N L +++K+K TT +RFI+ALGIR VGE TA LAN+FK LE + A E
Sbjct: 487 LERMGPKSAENALTSLEKAKNTTLARFIFALGIRDVGEATALNLANHFKTLEALQNADLE 546
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--------NP--------- 598
QL +P +G F + + ++ L G++W NP
Sbjct: 547 QLQQVPDVGEVVANRIFVFWREAHNVTVVEDLIAQGVHWETVEVQEVKENPFKDKTVVLT 606
Query: 599 ---------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +S T+Y++ G+ G KL KA +L +++L E+ F+
Sbjct: 607 GTLSQMGRNDAKALLQQLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFL 666
>gi|451812335|ref|YP_007448789.1| DNA ligase (NAD+) [Candidatus Kinetoplastibacterium galatii TCC219]
gi|451778237|gb|AGF49185.1| DNA ligase (NAD+) [Candidatus Kinetoplastibacterium galatii TCC219]
Length = 684
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 291/684 (42%), Positives = 436/684 (63%), Gaps = 48/684 (7%)
Query: 7 KKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKD 66
K I+F K ++ +L++ + HNI YY YD+PIISD +YD+L+ EL +E YP L+T+
Sbjct: 3 KDIDFIK--DKIEDLRRTIEEHNIHYYCYDSPIISDLEYDRLMSELSNLESMYPNLITEY 60
Query: 67 SLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL----KLTKNIEYIA 122
S TQ VG + V H+ M+SL N F+ EDV +FNK++ + L + +IEY
Sbjct: 61 SPTQRVGSSPLMSFNKVKHSVPMLSLSNAFTSEDVNLFNKKVISSLCKKIDIKDDIEYFC 120
Query: 123 ELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRC 182
+LK DG+AVNLRYE G L STRGDG IGE++T+N+ I IPL L I P++L+VR
Sbjct: 121 DLKLDGLAVNLRYENGVLVHGSTRGDGYIGEDVTSNVRAIKSIPLRL-IGDVPKILDVRG 179
Query: 183 EVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG 242
EVL+Y KDF LN G + F NPRNAAAG LR L+ KI+ + L FFA+G G +
Sbjct: 180 EVLMYNKDFDDLNNKNIKKGERVFVNPRNAAAGSLRNLDSKISSMRKLRFFAYGWGNIND 239
Query: 243 MNMPS--------SHSELLNWYQKIGLSICGEY-SVLSGVNKLIEFYKKINIKRFNLPYE 293
N + +H +LNW+ +GL + +Y V+SG++ ++ +Y I R +LPY
Sbjct: 240 NNEINEISKFEHKTHESVLNWFVLLGLPVNKKYHKVVSGISGILSYYDSIVNNRNSLPYG 299
Query: 294 IDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALL 353
IDGVVYK+N L QK LG++SRAPRFALA+KFL++EA+T+I I++Q+GRTG ITPVA L
Sbjct: 300 IDGVVYKVNSLDKQKILGYSSRAPRFALAHKFLAEEAITQIVGIDVQVGRTGAITPVARL 359
Query: 354 KPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFK 413
KPV + G+T++ ATLHNE+EI RK+I+IGD V++ R+G+VIP++ S+++ LRPN++ F
Sbjct: 360 KPVFVGGVTVSNATLHNENEIKRKDIRIGDFVIIRRAGDVIPEVVSTVIDLRPNNTIQFI 419
Query: 414 IPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKL 473
+ + CP+CNS I I++ ++ RC+G + C AQ K L+H SRKA+NI+G G+K+IEKL
Sbjct: 420 MADRCPVCNSSIKRIDNEIVYRCTGG-LYCPAQLKQSLKHALSRKALNIVGFGEKLIEKL 478
Query: 474 VNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGE 533
V+ + + VD++++ +L+ +D V+ K A N+L +I ++ + S F++A+GIRHVGE
Sbjct: 479 VDNGYLRSLVDIFRLTISDLMNIDLVAEKSATNLLKSINSARKPSLSSFLFAMGIRHVGE 538
Query: 534 TTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIY 593
TTA ++A FK ++ + A+ ++LL++ IG T + F ++ + +I LR + +Y
Sbjct: 539 TTAADIAKKFKTIDNIIIASFDELLSVNDIGYRTANSIKLFFSEKHNLDVIYSLRSIDVY 598
Query: 594 WLNNPNTK-------------------------------GGKVVNFISKNTNYLVKGQKP 622
++ K GGKV + ISK +YL+ G+
Sbjct: 599 PISEEYEKVSEKLKGKSFAVTGKFQDYSREEIIKYIESNGGKVTSNISKKNDYLITGENS 658
Query: 623 GKKLEKAIKLNIKILDEKNFVKIV 646
GKKL A I+I+D++ F+K+V
Sbjct: 659 GKKLNFAENNGIQIIDQQEFIKLV 682
>gi|219870289|ref|YP_002474664.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis SH0165]
gi|254781340|sp|B8F314.1|DNLJ_HAEPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|219690493|gb|ACL31716.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis SH0165]
Length = 675
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 270/657 (41%), Positives = 401/657 (61%), Gaps = 35/657 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+++L + Y++ DNP++ D +YD+L+ ELK +E ++PEL+T DS TQ VG +
Sbjct: 12 LREKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELITSDSPTQRVGAKPLDGF 71
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN-IEYIAELKFDGIAVNLRYEYGY 139
+ H M+SLDN FSD+D+ F +RI + + + N IE+ E K DG+AV++ Y G
Sbjct: 72 AQITHEIPMLSLDNAFSDDDLTGFLRRIEDRIAINSNQIEFCCEPKLDGLAVSILYVDGV 131
Query: 140 LKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRY 199
L QA+TRGDG GE+IT NI I IPL L PP LEVR EV + ++ F +LN+
Sbjct: 132 LTQAATRGDGTTGEDITANIRTIRNIPLKLKTNNPPHRLEVRGEVFMPQQGFEQLNEKAL 191
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHSELLNWYQK 258
G K F NPRNAAAG LRQL+PKI + L A+ +G + +P++H + L W +
Sbjct: 192 AKGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYNIGVYESDDELPTTHFDRLQWLKT 251
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
+G+ + E ++ +G L FY+KI KR +L Y+IDG V K+N ++ Q++LGF S+APR
Sbjct: 252 LGIPVNAEITLATGSQALTAFYQKIQAKRSSLGYDIDGTVLKVNEITLQEQLGFISKAPR 311
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 312 WAIAYKFPAQEEMTILNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERLG 371
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
I IGDTV++ R+G+VIP+I + RP+++K P CP+CNS ++ +E +ARC+G
Sbjct: 372 IAIGDTVIIRRAGDVIPQIVGVVAERRPDNAKKIAFPTACPVCNSAVVRVEGEAVARCTG 431
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
C AQRK L+HF SRKAM+I G+G+K+IE+L+ ++ T DL+K++ L+RLDR
Sbjct: 432 GLF-CGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMERELIHTPADLFKLDHTTLMRLDR 490
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K ANN L +I+K+K TT +RF++ALGIR VGE+TA+ LAN+F L+ + +A + L
Sbjct: 491 MGEKSANNALQSIEKAKNTTLARFLFALGIRDVGESTAQNLANHFGTLDAIRQADLDTLK 550
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------LNNP------------ 598
+ +G +F +P + ++ L G+ W +NP
Sbjct: 551 QVQDVGEVVANRLFQFWQEPHNVEVVEDLIAQGVTWQDVVPQEIADNPLKDKTVVLTGTL 610
Query: 599 ------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +S T+YL+ G+K G KL KA +L +KIL E +
Sbjct: 611 TQLTRDQAKALLQQLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILSEDELI 667
>gi|114319842|ref|YP_741525.1| DNA ligase, NAD-dependent [Alkalilimnicola ehrlichii MLHE-1]
gi|122312282|sp|Q0AAV2.1|DNLJ_ALHEH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|114226236|gb|ABI56035.1| DNA ligase, NAD-dependent [Alkalilimnicola ehrlichii MLHE-1]
Length = 673
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 259/663 (39%), Positives = 403/663 (60%), Gaps = 36/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ L++E+ H+ YY+ D P+I+D +YD L+ EL+ +E ++PEL+T DS +Q V
Sbjct: 11 RIEALRREIREHDHRYYVLDAPVIADAEYDALMAELQALEAEHPELITPDSPSQRVAGRP 70
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E V H M+SLDN F + D+ F++R+ L L + Y+AE K DG++V++RYE
Sbjct: 71 AEGFGEVTHAEPMLSLDNAFEEADLAEFDRRVRQALGLDPVV-YVAEPKLDGLSVSIRYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A TRGDG +GE IT N+ I +PL L + P ++EVR EV+I + DF +LN+
Sbjct: 130 DGRLVRAGTRGDGRVGEAITENVRTIRSVPLRLRGEGWPPVMEVRGEVVIRRADFERLNE 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G + F NPRNAAAG LRQL+P+I + L FF GV + +SH E+L+
Sbjct: 190 QRLADGERPFANPRNAAAGSLRQLDPRITARRRLTFFTFGVAA--AGRLAASHHEVLDKL 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
G + + G++ E+Y+++ R L +EIDGVVYK++ L +++LGFT+RA
Sbjct: 248 AGWGFRVNERVERVRGLDGCREYYQRLLADRDELSFEIDGVVYKVDDLDAREELGFTARA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+K ++EA T ++ I +GRTG ITPVA L+PV + G+T++RATLHN E+ R
Sbjct: 308 PRWAIAWKLPAQEATTVVRRILPSVGRTGAITPVAELEPVGVGGVTVSRATLHNLDEVRR 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+++ GDTV+V R+G+VIP+IT+ + RP ++ + +P CP+C S+++ ++ + RC
Sbjct: 368 KDVRKGDTVMVRRAGDVIPEITAVVTEKRPEGAEPWAMPAECPVCGSEVLRLDDEAVHRC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
G + C AQR+ L HF+SRKA++I GLG+K++ +LV +V + DL+ + L L
Sbjct: 428 MGG-LYCPAQREGALLHFASRKALDIDGLGEKVVSQLVERGMVRSPADLFTLEHCQLAGL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ +K A+N++ A+ K++ TT RF+YALGI+HVGE TA+ LA +F +LE + A E
Sbjct: 487 ERMGDKSADNLVAALDKARRTTLPRFLYALGIQHVGEVTARRLAEHFGSLEAIMNADESA 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN-NPNTK-------------- 601
L P +G +A F +P +R ++ LR G+ W +P +
Sbjct: 547 LAETPDVGPVVAQAIAHFFAEPHNREVVQALRAAGVTWEEVDPAERGEQPLAGRTFVLTG 606
Query: 602 -----------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
G +V +SK T+YLV G+K G KL KA L +++LDE+
Sbjct: 607 TLSGMTRDEAKAALEALGARVSGSVSKKTDYLVAGEKAGSKLAKAESLGVEVLDEQALQA 666
Query: 645 IVK 647
+++
Sbjct: 667 LLQ 669
>gi|261822799|ref|YP_003260905.1| NAD-dependent DNA ligase LigA [Pectobacterium wasabiae WPP163]
gi|261606812|gb|ACX89298.1| DNA ligase, NAD-dependent [Pectobacterium wasabiae WPP163]
Length = 681
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 270/678 (39%), Positives = 408/678 (60%), Gaps = 38/678 (5%)
Query: 6 KKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTK 65
K+ + ++ RV EL++ L H Y++ D P I D++YD+L+ ELK +E +PEL+T
Sbjct: 3 KEPAEVNTVALRVAELRRVLRHHEYKYHVEDAPEIPDSEYDKLMQELKALEADHPELVTS 62
Query: 66 DSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELK 125
DS TQ VG + V H M+SLDN F +E + F+KRI + LK ++ + ELK
Sbjct: 63 DSPTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDDLTFCCELK 122
Query: 126 FDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVL 185
DG+AV+L YE G L QA+TRGDG GENIT+NI + IPL L + P +EVR EV
Sbjct: 123 LDGLAVSLLYEDGVLVQAATRGDGTTGENITSNIRTVGAIPLRLEGENIPRRVEVRGEVF 182
Query: 186 IYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM 245
+ F KLN+ G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +
Sbjct: 183 MKHGGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 242
Query: 246 PSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLS 305
P+SH E L ++ GL + + +G ++++FY+++ R L ++IDGVV K++ L+
Sbjct: 243 PASHWERLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSELGFDIDGVVVKVDSLA 302
Query: 306 TQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITR 365
Q++LGF +RAPR+A+A+KF ++E LT ++ + Q+GRTG ITPVA L+PV + G+ ++
Sbjct: 303 LQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSN 362
Query: 366 ATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKI 425
ATLHN EI R +QIGD V+V R+G+VIP+I + S RP + P CP+C S +
Sbjct: 363 ATLHNADEIERLGLQIGDRVIVRRAGDVIPQIVGIVESERPETVQPIVFPVACPVCGSDV 422
Query: 426 IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDL 485
+E + RC+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL
Sbjct: 423 ERVEGEAVTRCTGGLI-CGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVKTPADL 481
Query: 486 YKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN 545
++++ ++ LDR+ K A N++ A++K+K TT +RF+YALGIR VGE+TA LA +F +
Sbjct: 482 FRLSAGSMTGLDRMGPKSAMNVVNALEKAKSTTLARFLYALGIRDVGESTAANLAAHFGS 541
Query: 546 LECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRD---VGIYW-------- 594
LE +F A E+ LL +P +G F+ + ++ +I +L D + I+W
Sbjct: 542 LEALFAADEDALLAVPDVGKIVAAHVRHFLEEEHNQTVIRELTDPAGINIHWPEVQVVNA 601
Query: 595 --LNNP------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEK 628
+++P G KV +SK T+ ++ G+ G KL K
Sbjct: 602 EEIDSPFAGKTVVLTGSLSILSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAK 661
Query: 629 AIKLNIKILDEKNFVKIV 646
A +L I ++DE ++++
Sbjct: 662 AQELGIAVIDEAEMIRLL 679
>gi|383311723|ref|YP_005364533.1| NAD-dependent DNA ligase LigA [Pasteurella multocida subsp.
multocida str. HN06]
gi|386835594|ref|YP_006240913.1| NAD-dependent DNA ligase [Pasteurella multocida subsp. multocida
str. 3480]
gi|380872995|gb|AFF25362.1| NAD-dependent DNA ligase LigA [Pasteurella multocida subsp.
multocida str. HN06]
gi|385202299|gb|AFI47154.1| DNA ligase, NAD-dependent [Pasteurella multocida subsp. multocida
str. 3480]
Length = 673
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 278/671 (41%), Positives = 396/671 (59%), Gaps = 34/671 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+ + +L++ L H Y++ DNP I D +YD+L LK +E++YP+ + DS TQ
Sbjct: 3 DSIKLEIEQLRQTLRYHEYQYHVLDNPQIPDAEYDRLFHRLKTLEQQYPQWFSSDSPTQR 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-KNIEYIAELKFDGIA 130
VG V H M+SLDN FSDE++ F KRI + L + K +E+ E K DG+A
Sbjct: 63 VGAKPLSAFAQVQHEMPMLSLDNAFSDEELHAFVKRIQDRLVFSPKLLEFCCEPKLDGLA 122
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V++ Y G L QA+TRGDGN GE+IT NI + IPL L ++ PP LEVR EV + +
Sbjct: 123 VSILYVDGKLTQAATRGDGNTGEDITLNIRTVRNIPLQLLMENPPTRLEVRGEVFMSQAG 182
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN+ G K F NPRNAAAG LRQL+P+I + L A+ +G G+N+P +H
Sbjct: 183 FEALNETALARGEKTFANPRNAAAGSLRQLDPRITSQRPLLLNAYSIGVAEGINLPDTHF 242
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
E L W + IG+ + E + G ++ FY+ I KR L Y+IDG V K+N ++ Q++L
Sbjct: 243 ERLQWLKSIGIPVNNEIQLCEGTENVLNFYRAIMQKRSTLGYDIDGTVIKVNDIALQEEL 302
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF S+APR+A+AYKF ++E LT + A+ Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 303 GFISKAPRWAIAYKFPAQEELTVLNAVEFQVGRTGAITPVAKLQPVFVAGVTVSNATLHN 362
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R ++ IGDTV++ R+G+VIP+I + RP +++ P CP+C S I+ IE
Sbjct: 363 GDEIARLDVAIGDTVIIRRAGDVIPQIIGVLHEKRPANTEKIVFPTECPVCGSVIVRIEG 422
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ + T DL+K++
Sbjct: 423 EAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGAKLIEQLVDREQIHTPADLFKLDL 481
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L RL+R+ K A N L ++QK+K TT +RFI+ALGIR VGE TA LAN+FK LE +
Sbjct: 482 NTLARLERMGLKSAQNALDSLQKAKKTTLARFIFALGIREVGEATALNLANHFKTLEALK 541
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL--------NNP---- 598
+AT EQL + +G F +P + ++ L GI+W +NP
Sbjct: 542 EATLEQLQEVQDVGEVVANRIFVFWREPHNVAVVDDLIAQGIHWETVEVKDVGDNPFKEK 601
Query: 599 --------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
G KV +S T+ +V G G KL KA +L +K++D
Sbjct: 602 TVVLTGTLTQMGRTEAKALLQQLGAKVSGSVSAKTDLVVAGDSAGSKLTKANELGVKVID 661
Query: 639 EKNFVKIVKGF 649
E F+ K +
Sbjct: 662 ENTFLAWSKPY 672
>gi|354596315|ref|ZP_09014332.1| DNA ligase [Brenneria sp. EniD312]
gi|353674250|gb|EHD20283.1| DNA ligase [Brenneria sp. EniD312]
Length = 684
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 269/671 (40%), Positives = 399/671 (59%), Gaps = 38/671 (5%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
+ S R EL++ L H Y++ D P I D +YD+L+ ELK +EE YP+L+T DS TQ V
Sbjct: 13 EASSRAAELRRVLRHHEYKYHVEDAPEIPDAEYDRLMRELKSLEEAYPQLVTADSPTQRV 72
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
G + V H M+SLDN F +E + F+KRI + LK ++ + ELK DG+AV+
Sbjct: 73 GAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDDLTFCCELKLDGLAVS 132
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
L YE G L +A+TRGDG GENIT NI + IPL L P LEVR EV + F
Sbjct: 133 LLYEEGVLTRAATRGDGATGENITANIRTVGAIPLRLTGDNIPRRLEVRGEVFMKHSGFE 192
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
KLN+ G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SH
Sbjct: 193 KLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPDSHWRR 252
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
L +++ GL + + +G ++++FY+ I R L ++IDGVV K++ L+ Q +LG+
Sbjct: 253 LMQFRRWGLPVSDRIRLCTGSAEVLDFYRHIEQTRGALDFDIDGVVVKVDDLALQARLGY 312
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
+RAPR+A+A+KF ++E LT ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN
Sbjct: 313 VARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVMVSNATLHNAD 372
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
EI R ++IGD V V R+G+VIP+I + + RP +++ P++CP+C S + +E +
Sbjct: 373 EIERLGLRIGDRVTVRRAGDVIPQIVGVVETERPENARPIVFPDVCPVCGSDVERVEGEV 432
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
+ RC+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL++++
Sbjct: 433 VTRCTGGLI-CGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVKTPADLFRLSAGI 491
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
L LDR+ K A N++ A++K+K TT +RF++ALGIR VGE TA LA +F +LE +F A
Sbjct: 492 LTGLDRMGPKSAQNLVGALEKAKSTTLARFLFALGIRDVGEATAANLAAHFGSLEALFAA 551
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRD---VGIYWLNNPNTK-------- 601
EE LL +P +G F+ + +R +I +L D + I+W P K
Sbjct: 552 DEESLLEVPDVGKVVAARVRHFLEEEHNRQVIRELIDPDGINIHWPQPPAVKAQEIDSPF 611
Query: 602 --------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIK 635
G +V +SK T+ ++ G+ G KL KA +L I
Sbjct: 612 AGKTLVLTGSLSILSRDEAKDRLTALGARVSGSVSKKTDMVIAGEAAGSKLTKAQELGIP 671
Query: 636 ILDEKNFVKIV 646
++DE ++++
Sbjct: 672 VIDEAEMMRLL 682
>gi|375262142|ref|YP_005021312.1| NAD-dependent DNA ligase LigA [Klebsiella oxytoca KCTC 1686]
gi|365911620|gb|AEX07073.1| NAD-dependent DNA ligase LigA [Klebsiella oxytoca KCTC 1686]
Length = 674
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 404/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E +YPEL+T DS TQ VG
Sbjct: 7 KLTELRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELEAQYPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + H M+SLDN F +E + FNKR+ + LK T N+ Y ELK DG+AV++ YE
Sbjct: 67 LASFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNTDNLTYCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE+IT+N+ I IPL L P+ LEVR EV + + F K+N+
Sbjct: 127 NGLLVQAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPQRLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SHS L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHSARLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +++ +Y+++ R L ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KSWGLPVSERVKLCHTPEEVLTYYRQVEEDRPKLGFDIDGVVIKVDSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C+S + +E ++ RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREIVFPTHCPVCHSDVERVEGEVVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFQLTPGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++KSK TTF+RF+YALGIR VGE TA LA +F +E + +A+ +
Sbjct: 486 DRMGPKSAQNVVDALEKSKETTFARFLYALGIREVGEATAAGLAAHFGTIEALEQASIDD 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I+QLR G+ W
Sbjct: 546 LQKVPDVGIVVATHVRNFFAEESNREVIAQLRKEGVRWPAPVVVNAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEDEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|416894499|ref|ZP_11925087.1| DNA ligase [Aggregatibacter aphrophilus ATCC 33389]
gi|347813461|gb|EGY30134.1| DNA ligase [Aggregatibacter aphrophilus ATCC 33389]
Length = 671
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 274/665 (41%), Positives = 398/665 (59%), Gaps = 34/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+K L H Y++ D P I D++YD+L +LK +E+++P L+T DS TQ VG
Sbjct: 8 QIDDLRKTLRYHEYQYHVLDEPQIPDSEYDRLFHQLKALEQQHPALITTDSPTQRVGARP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-KNIEYIAELKFDGIAVNLRY 135
+ H M+SLDN FSDE+ + F KRI + L L + + + E K DG+AV++ Y
Sbjct: 68 LSEFAQIKHELPMLSLDNAFSDEEFLAFVKRIQDRLGLVPEPLTFCCEPKLDGLAVSILY 127
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
G L QA+TRGDG GE+IT NI I IPL L PP LEVR EV + F +LN
Sbjct: 128 VNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPHDGFERLN 187
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
+ G K F NPRNAAAG LRQL+PKI + L F A+ +G + +++P +H E L W
Sbjct: 188 ERALEQGEKTFANPRNAAAGSLRQLDPKITSQRPLVFNAYSIGVAQRIDLPPTHFERLQW 247
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ IG+ + E + G+ ++ FY+ + KR +L Y+IDG V K+N + Q++LGF S+
Sbjct: 248 LKSIGVPVNSEIRLCDGIENVLNFYRTMMEKRSSLGYDIDGTVLKVNDIELQQRLGFISK 307
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI
Sbjct: 308 APRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTVSNATLHNGDEIE 367
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
R NI IGDTV++ R+G+VIP+I + RP +++ P CP+C+S I+ IE +AR
Sbjct: 368 RLNIAIGDTVIIRRAGDVIPQIIGVVHDRRPANARQIVFPTHCPVCDSLIVRIEGEAVAR 427
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ +V T DL+K++ L R
Sbjct: 428 CTGGLF-CAAQRKEALKHFVSRKAMDIDGVGAKLIEQLVDRELVHTPADLFKLDLATLTR 486
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L+R+ +K A N L++++K+K TT +RFI+ALGIR VGE TA LAN+FK LE + A E
Sbjct: 487 LERMGSKSAENALVSLEKAKHTTLARFIFALGIRDVGEATALNLANHFKTLEALQNADLE 546
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--------NP--------- 598
QL + +G F + + +++ L G++W NP
Sbjct: 547 QLQQVSDVGEVVANRIFVFWREEHNVAVVNDLIAQGVHWETVEVQDVKENPFKDKTVLLT 606
Query: 599 ---------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +S T+Y++ G+ G KL KA +L +++L E+ F+
Sbjct: 607 GTLSQMGRNDAKALLQQLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFL 666
Query: 644 KIVKG 648
V G
Sbjct: 667 AWVNG 671
>gi|114563631|ref|YP_751144.1| NAD-dependent DNA ligase [Shewanella frigidimarina NCIMB 400]
gi|122299383|sp|Q080K9.1|DNLJ_SHEFN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|114334924|gb|ABI72306.1| DNA ligase, NAD-dependent [Shewanella frigidimarina NCIMB 400]
Length = 670
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 268/661 (40%), Positives = 408/661 (61%), Gaps = 38/661 (5%)
Query: 20 ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGEN 79
+L +++HNI YY+ D P I D +YD+L+ L ++E YP+ + DS TQ VG + +
Sbjct: 10 QLTHTINQHNIRYYVDDAPSIPDAEYDRLIKRLTELEGDYPQFKSVDSPTQRVGGIALQK 69
Query: 80 SKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGY 139
+ H M+SLDN F D FNKRIT+++ N++Y+ E K DG+AV++ Y +G
Sbjct: 70 FAQITHLKPMLSLDNAFEQADFAAFNKRITDKVD---NVDYVCEPKLDGLAVSITYRFGV 126
Query: 140 LKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRY 199
L++A+TRGDG++GE+IT N+ I IPL L + P+L+EVR EV + K F LN+ +
Sbjct: 127 LERAATRGDGSVGEDITANVRTIRSIPLKLRGEGFPDLVEVRGEVFMPKAAFEVLNQRQI 186
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP--SSHSELLNWYQ 257
G K F NPRNAAAG LRQL+ KI ++ L F+A+ +G + G + P +SH L Q
Sbjct: 187 SKGDKVFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEGESQPMQTSHYGQLTQLQ 246
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
+ G+ + E V + K+ +Y I +R L YEIDGVV K+N ++ Q+ LGF ++AP
Sbjct: 247 QWGVPVSSEVKVTDSLEKVYAYYADIMARRSALEYEIDGVVIKVNDIAKQQTLGFVAKAP 306
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+AYKF ++E +T +++++ Q+GRTG +TPVA LKP+ + G+T++ ATLHN EI R
Sbjct: 307 RWAIAYKFPAQEEMTLLESVDFQVGRTGAVTPVARLKPIFVGGVTVSNATLHNADEIARL 366
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
++IGDTV++ R+G+VIP+I + + RP+D++ P CP+C S + +E +ARCS
Sbjct: 367 GVKIGDTVIIRRAGDVIPQIVAIVPEKRPDDAQDIIFPQHCPVCQSIVERLEGEAVARCS 426
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G C AQRK ++HF+SRKA+NI G+G K++E+L++ +V T DL+ + ++ LD
Sbjct: 427 GGLF-CEAQRKEAIKHFASRKALNIDGMGDKIVEQLIDKELVKTPADLFSLTASSVTMLD 485
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R++ K A NI+ AI+++K TT +RF+Y+LGIR VGE TA LA +F E + A+ EQL
Sbjct: 486 RMAMKSATNIVAAIKQAKTTTLARFLYSLGIREVGEATAANLAQHFTEFERIRTASVEQL 545
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------------------- 594
L + +G K +F +QP + +I QL + GI W
Sbjct: 546 LEVADVGDIVAKHIRQFFSQPHNIEVIDQLLEAGITWPVIEQADESQLSLKGQTWVLTGT 605
Query: 595 ---LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
LN + K G KV +SKNT+ LV G+ G KL KA +L +K++DE+ + +
Sbjct: 606 LTQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAEELGVKVIDEQALMDL 665
Query: 646 V 646
+
Sbjct: 666 L 666
>gi|118594798|ref|ZP_01552145.1| DNA ligase, NAD-dependent [Methylophilales bacterium HTCC2181]
gi|118440576|gb|EAV47203.1| DNA ligase, NAD-dependent [Methylophilales bacterium HTCC2181]
Length = 671
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 281/664 (42%), Positives = 416/664 (62%), Gaps = 37/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ +LKK + HN YY+ DNP+ISD ++D++ E+K IE+ PEL+T DS TQ VG
Sbjct: 10 RLVDLKKLISEHNYHYYVLDNPLISDAEFDKIFLEIKAIEDLNPELITIDSPTQRVGGEP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
++ K + H M+SL N F ++D+ +F+KRI EL + NI Y+AE KFDG+AV + Y
Sbjct: 70 NKSFKQITHQRPMLSLGNAFDEKDLDVFDKRIREELGVA-NISYVAEPKFDGLAVTIVYV 128
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG++GE++T NI I IPL L P +E+R EV++ K DFI LNK
Sbjct: 129 DGELHLAATRGDGSVGEDVTHNIKTIKSIPLKLPSNSPAGQIEIRGEVIMLKNDFIGLNK 188
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ K F NPRNAAAG LRQL+P I ++ L F+A+ + +S E L+
Sbjct: 189 RQLEANEKVFANPRNAAAGSLRQLDPTIAASRPLSFYAYSI--FCDNKTLASQEEGLDLL 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+++ + + GV +I+FY IN R +LP++IDGVVYK+N L+ Q +LGF SRA
Sbjct: 247 KQLLIPTSNLTKRVDGVRGMIDFYNAINNARKSLPFDIDGVVYKVNSLNMQDELGFVSRA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++EA+T IK IN+Q+GRTG ITPVA L PV++ G+T+T ATLHNE E+ R
Sbjct: 307 PRWAIAHKFAAEEAMTTIKDINVQVGRTGSITPVARLMPVVVAGVTVTNATLHNEDELRR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I IGD V+V R+G+V+P++ + RPND K F++P +CP C++ ++ E + RC
Sbjct: 367 KDIHIGDFVMVRRAGDVVPEVIKVVHEKRPNDIKKFEMPTLCPECSNVLVREEGESVLRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+ + C AQRK + HF+SRKAM+I GLG+K+I++L+ +++V++ DLY + + LL+L
Sbjct: 427 NAGML-CPAQRKQSIMHFASRKAMDIDGLGEKIIDQLIESSLVLSVSDLYTVKTEKLLKL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR + K A N++ +I+KSK TT +FIYALGIR+VGE TA +LA F +++ + A++E
Sbjct: 486 DRFAKKSAENLIESIEKSKKTTLGKFIYALGIRNVGEATAYDLAKQFGSIDKIMSASKES 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
LL+I IG T + + N+ +R ++ L GI W
Sbjct: 546 LLSIHDIGPTVATSIQNYFNEDTNREQVAILLKEGIQWDSIEVGAEEISNELEGLVFVLT 605
Query: 595 -----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
L K GGKV +SK T+Y++ G G KL+KA L +K++ E +
Sbjct: 606 GTLTSLKRDEAKNLILSCGGKVSGSVSKKTDYVIAGLDAGSKLDKASALGVKVIGEDELI 665
Query: 644 KIVK 647
++ K
Sbjct: 666 QLTK 669
>gi|421082411|ref|ZP_15543294.1| DNA ligase [Pectobacterium wasabiae CFBP 3304]
gi|401702648|gb|EJS92888.1| DNA ligase [Pectobacterium wasabiae CFBP 3304]
Length = 681
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 269/678 (39%), Positives = 407/678 (60%), Gaps = 38/678 (5%)
Query: 6 KKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTK 65
K+ + ++ RV EL++ L H Y++ D P I D++YD+L+ ELK +E +PEL+T
Sbjct: 3 KEPAEVNAVALRVAELRRVLRHHEYKYHVEDAPEIPDSEYDKLMRELKALEADHPELVTS 62
Query: 66 DSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELK 125
DS TQ VG + V H M+SLDN F +E + F+KRI + LK ++ + ELK
Sbjct: 63 DSPTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDDLTFCCELK 122
Query: 126 FDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVL 185
DG+AV+L YE G L QA+TRGDG GENIT+NI + IPL L + P +EVR EV
Sbjct: 123 LDGLAVSLLYEDGVLVQAATRGDGTTGENITSNIRTVGAIPLRLEGENIPRRVEVRGEVF 182
Query: 186 IYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM 245
+ F KLN+ G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +
Sbjct: 183 MKHGGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 242
Query: 246 PSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLS 305
P+SH + L ++ GL + + +G ++++FY+++ R L ++IDGVV K++ L+
Sbjct: 243 PASHCKRLKQFKDWGLPVSDRIKLCTGSAEVLDFYRQVEQTRSELGFDIDGVVVKVDSLA 302
Query: 306 TQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITR 365
Q++LGF +RAPR+A+A+KF ++E LT ++ + Q+GRTG ITPVA L+PV + G+ ++
Sbjct: 303 LQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSN 362
Query: 366 ATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKI 425
ATLHN EI R +QIGD V+V R+G+VIP+I + S RP + P CP+C S +
Sbjct: 363 ATLHNADEIERLGLQIGDRVIVRRAGDVIPQIVGIVESERPETVQAIVFPVACPVCGSDV 422
Query: 426 IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDL 485
+E + RC+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL
Sbjct: 423 ERVEGEAVTRCTGGLI-CGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVKTPADL 481
Query: 486 YKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN 545
++++ + LDR+ K A N++ A++K+K TT +RF+YALGIR VGE+TA LA +F +
Sbjct: 482 FRLSAGIMTGLDRMGPKSATNLVNALEKAKSTTLARFLYALGIRDVGESTAANLAAHFGS 541
Query: 546 LECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRD---VGIYW-------- 594
LE +F A E+ LL +P +G F+ + ++ +I +L D + I+W
Sbjct: 542 LEALFAADEDALLAVPDVGKVVAAHVRHFLEEEHNQTVIRELTDPVGINIHWPEVQVVNA 601
Query: 595 --LNNP------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEK 628
+++P G KV +SK T+ ++ G+ G KL K
Sbjct: 602 EEIDSPFAGKTVVLTGSLSILSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAK 661
Query: 629 AIKLNIKILDEKNFVKIV 646
A +L I ++DE ++++
Sbjct: 662 AQELGIPVIDEAEMIRLL 679
>gi|417843137|ref|ZP_12489214.1| DNA ligase [Haemophilus haemolyticus M21127]
gi|341950371|gb|EGT76960.1| DNA ligase [Haemophilus haemolyticus M21127]
Length = 672
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 278/669 (41%), Positives = 400/669 (59%), Gaps = 34/669 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++ L+K L ++ Y++ DNP + D++YD+L +LK +E ++PE LT DS TQ
Sbjct: 1 MTNIQTQIDNLRKTLRQYEYEYHVLDNPTVPDSEYDRLFHQLKALELEHPEFLTSDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK-LTKNIEYIAELKFDGI 129
VG + H M+SLDN FSDE+ F KRI + L L K + + E K DG+
Sbjct: 61 RVGAKPLSGFSQIRHEIPMLSLDNAFSDEEFNAFVKRIEDRLIILPKQLTFCCEPKLDGL 120
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G L QA+TRGDG GE+IT NI I IPL L PP LEVR EV +
Sbjct: 121 AVSILYVNGVLTQAATRGDGTTGEDITANIRTIRNIPLQLLTDNPPARLEVRGEVFMPHA 180
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LN+Y G K F NPRNAAAG LRQL+P + + L A+G+G G+ +P++H
Sbjct: 181 GFERLNEYALEHGEKTFANPRNAAAGSLRQLDPNVTSKRPLVLNAYGIGIAEGVELPNTH 240
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
L W + IG+ + E + +G N +++FY+ I KR +L Y+IDG V KIN ++ Q +
Sbjct: 241 YARLQWLKSIGIPVNPEIRLCNGTNAVLDFYRDIQNKRSSLGYDIDGTVLKINDIALQNE 300
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF S+APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 301 LGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 360
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R NI IGDTVV+ R+G+VIP+I + RP+++K P CP+C+S+II IE
Sbjct: 361 NGDEIERLNIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIE 420
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++
Sbjct: 421 GEAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGIGGKLIEQLVDRELIHTPADLFKLD 479
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L RL+R+ +K A N L +++K+K TT +RFI+ALGIR VGE TA LAN+FK L+ +
Sbjct: 480 LTTLTRLERMGSKSAENALNSLEKAKSTTLARFIFALGIREVGEATALNLANHFKTLDAL 539
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
A E+L +P +G F + + ++ L G++W
Sbjct: 540 KAADLEELQQVPDVGEVVANRIFVFWREAHNVAVVEDLIAQGVHWETVEVKEVSENLFKD 599
Query: 595 ----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L T+ G KV +S T++++ G G KL KA +LNI +L
Sbjct: 600 KTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNIAVL 659
Query: 638 DEKNFVKIV 646
E+ F+ V
Sbjct: 660 TEEEFLAQV 668
>gi|398812152|ref|ZP_10570927.1| DNA ligase, NAD-dependent [Variovorax sp. CF313]
gi|398078780|gb|EJL69666.1| DNA ligase, NAD-dependent [Variovorax sp. CF313]
Length = 695
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 277/681 (40%), Positives = 416/681 (61%), Gaps = 61/681 (8%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L ++LHRH YY+ D P + D +YD+L L+ IE ++P+L T DS TQ VG +
Sbjct: 14 LSEQLHRHAHLYYVLDTPELPDAEYDRLFQRLQAIETEFPDLRTPDSPTQRVGGKVLDGF 73
Query: 81 KYVHHTFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAVNLRY 135
V H M+S+ + + F+ R+ EL L ++ + Y+ ELKFDG+A+NLRY
Sbjct: 74 VKVRHRVPMLSIRTETDITPGGASAFDARVRKELGLPEDGPQVAYVCELKFDGLAMNLRY 133
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
E G L QA+TRGDG +GE++T NI + +IPL LN PP ++EVR EV + + DF LN
Sbjct: 134 ENGVLVQAATRGDGEVGEDVTQNIRTVREIPLRLNGTAPP-VVEVRGEVYMKRADFDALN 192
Query: 196 ---KYRYHLGLKK---FTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELR-----GMN 244
+ R G K F NPRNAAAG +RQL+P I + L FFA+G+GE+ G +
Sbjct: 193 ERQRQRIADGQKNEKVFVNPRNAAAGAVRQLDPAIAAARPLSFFAYGLGEVTPAAEGGPD 252
Query: 245 MPSSHSELLNWYQKI---GLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKI 301
P+ +W Q+ G + + + +G +LI F++ I +R LPY+IDGVVYK+
Sbjct: 253 CPTQ----FDWLQQFDAWGFPVARQTARATGAIELIAFHENIGRQRDALPYDIDGVVYKV 308
Query: 302 NCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGI 361
+ + Q++LGF SR PR+A+A+K+ ++E LT++ I IQ+GRTG +TPVA L PV + G+
Sbjct: 309 DSIELQRQLGFVSREPRWAVAHKYPAQEQLTEVVGIEIQVGRTGKLTPVAKLAPVFVGGV 368
Query: 362 TITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILS--LRPNDSK--IFKIPNI 417
T+T ATLHNE E RK++++GDTV+V R+G+VIP++ RP+D + +F +P+
Sbjct: 369 TVTNATLHNEDEARRKDVRVGDTVIVRRAGDVIPEVVGVAPDSLARPDDQRGAVFTMPHK 428
Query: 418 CPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNAN 477
CP+C+S+ + E + RCSG C AQRK + HF++R+A+++ GLG K++E+LV+AN
Sbjct: 429 CPVCDSEAVREEGEVDYRCSGGLF-CAAQRKEAILHFAARRAVDVDGLGDKLVEQLVDAN 487
Query: 478 IVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAK 537
++ T DLYK+ F L LDR++ K A N++ A++ SK TT RF++ LGIRHVGETTAK
Sbjct: 488 LIRTLPDLYKLGFTTLAGLDRMAEKSAKNLVDALEASKKTTLPRFLFGLGIRHVGETTAK 547
Query: 538 ELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--- 594
+LA +F L+ + A+EEQLL + +G ++ F +QP +R ++ QLR G+ W
Sbjct: 548 DLAKHFGKLDAIMDASEEQLLEVNDVGPVVAQSLRTFFDQPHNREVVEQLRACGLSWEEG 607
Query: 595 -----------------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKK 625
L+ K G KV +SK T+YLV G++ G K
Sbjct: 608 EPAARAPKPLAGLTFVITGTLPTLSRDEAKDKLEAAGAKVSGSVSKKTHYLVAGEEAGSK 667
Query: 626 LEKAIKLNIKILDEKNFVKIV 646
L+KA + ++I+DE ++I+
Sbjct: 668 LDKARENGVEIIDEARMLEIL 688
>gi|167855687|ref|ZP_02478444.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis 29755]
gi|167853205|gb|EDS24462.1| NAD-dependent DNA ligase LigA [Haemophilus parasuis 29755]
Length = 675
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 270/657 (41%), Positives = 402/657 (61%), Gaps = 35/657 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+++L + Y++ DNP++ D +YD+L+ ELK +E ++PEL+T DS TQ VG +
Sbjct: 12 LREKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELITSDSPTQRVGAKPLDGF 71
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN-IEYIAELKFDGIAVNLRYEYGY 139
+ H M+SLDN FSD+D+I F +RI + + + N IE+ E K DG+AV++ Y G
Sbjct: 72 AQITHEIPMLSLDNAFSDDDLIGFLRRIEDRIAINSNQIEFCCEPKLDGLAVSILYVDGV 131
Query: 140 LKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRY 199
L QA+TRGDG GE+IT NI I IPL L PP LEVR EV + ++ F +LN+
Sbjct: 132 LTQAATRGDGTTGEDITANIRTIRNIPLKLKTNNPPHRLEVRGEVFMPQQGFEQLNEKAL 191
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHSELLNWYQK 258
G K F NPRNAAAG LRQL+PKI + L A+ +G + +P++H + L W +
Sbjct: 192 AKGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYNIGVYESDDELPTTHFDRLQWLKT 251
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
+G+ + E ++ +G L FY+KI KR +L Y+IDG V K+N ++ Q++LGF S+APR
Sbjct: 252 LGIPVNAEITLATGSQALTAFYQKIQAKRSSLGYDIDGTVLKVNEITLQEQLGFISKAPR 311
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 312 WAIAYKFPAQEEMTILNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERLG 371
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
I IGDTV++ R+G+VIP+I + RP+++K P CP+CNS ++ +E +ARC+G
Sbjct: 372 IAIGDTVIIRRAGDVIPQIVGVVAERRPDNAKKIAFPTACPVCNSAVVRVEGEAVARCTG 431
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
C AQRK L+HF SRKAM+I G+G+K+IE+L+ ++ T DL+K++ L+RL+R
Sbjct: 432 GLF-CGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMERELIHTPADLFKLDHTTLMRLER 490
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K ANN L +I+K+K TT +RF++ALGIR VGE+TA+ LAN+F L+ + +A + L
Sbjct: 491 MGEKSANNALQSIEKAKNTTLARFLFALGIRDVGESTAQNLANHFGTLDAIRQADLDTLK 550
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------LNNP------------ 598
+ +G +F +P + ++ L G+ W +NP
Sbjct: 551 QVQDVGEVVANRLFQFWQEPHNVEVVEDLIAQGVKWQDVVPQEIADNPLKDKTVVLTGTL 610
Query: 599 ------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +S T+YL+ G+K G KL KA +L +KIL E +
Sbjct: 611 TQLTRDQAKALLQQLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKILSEDELI 667
>gi|387772497|ref|ZP_10128416.1| DNA ligase (NAD+) [Haemophilus parahaemolyticus HK385]
gi|386906218|gb|EIJ70956.1| DNA ligase (NAD+) [Haemophilus parahaemolyticus HK385]
Length = 696
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 272/667 (40%), Positives = 406/667 (60%), Gaps = 35/667 (5%)
Query: 15 SFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGL 74
S + +L++ L ++ Y++ DNP++ D +YD+L+ ELK IE+ +PEL+T DS TQ VG
Sbjct: 31 SLELEQLRQTLRKYEYHYHVLDNPLVPDTEYDRLMNELKAIEKAHPELVTPDSPTQRVGA 90
Query: 75 VGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVNL 133
+ H M+SLDN FS E+++ F +RI ++ + + + + E K DG+AV++
Sbjct: 91 KPLSGFIQITHELPMLSLDNAFSHEELLGFLRRIEGQIHRNPETMVFCCEPKLDGLAVSI 150
Query: 134 RYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIK 193
Y G L QA+TRGDG GE+IT N+ I +PL LN+ PP LEVR EV + +K F
Sbjct: 151 LYVNGILTQAATRGDGTTGEDITANVRTIRNVPLRLNMDNPPARLEVRGEVFMPQKGFNA 210
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHSEL 252
LN+ G K F NPRNAAAG LRQL+PKI + L A+G+G +P++H +
Sbjct: 211 LNERALEHGEKTFANPRNAAAGSLRQLDPKITAQRPLTLNAYGIGIYEAEQPLPNTHFDR 270
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
L W + IG+ + E + GV +L EFY I KR L Y+IDG V K+N ++ Q++LGF
Sbjct: 271 LQWLKSIGIPVNNEIRLAKGVEQLAEFYADIQAKRPKLGYDIDGTVLKVNDIALQEQLGF 330
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
SR+PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 331 ISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGD 390
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
EI R I IGDTV++ R+G+VIP+I + RP ++K P CP+C S ++ ++
Sbjct: 391 EIERLGIAIGDTVIIRRAGDVIPQIIGVVAERRPTNAKKIVFPTTCPVCESAVVRVDGEA 450
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
+ARC+G C AQRK L+HF SRKAM+I G+G+K+IE+L+ + ++ T DL+K++
Sbjct: 451 VARCTGGLF-CEAQRKEALKHFVSRKAMDIEGVGEKLIEQLMASELIKTPADLFKLDKTI 509
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
L+RL+R+ K A N+L +++K+K TT RF++ALGIR VGE+TA LAN+F LE + A
Sbjct: 510 LMRLERMGEKSAQNVLNSLEKAKQTTLPRFLFALGIRDVGESTALNLANHFGTLEAIQVA 569
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------LNNP------ 598
T EQL + +G + F +P + ++ L+ GI+W +NP
Sbjct: 570 TFEQLQEVQDVGEVVANRIVSFWKEPHNVAVVEDLQAQGIHWQAVEKVEIADNPLKDKNV 629
Query: 599 ------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
G KV +S T+YL+ G+K G KL KA +L +K+L E+
Sbjct: 630 VLTGTLSQLTRDQAKALLQGLGCKVSGSVSSKTDYLIAGEKAGSKLVKAQELGVKVLSEQ 689
Query: 641 NFVKIVK 647
F+ ++K
Sbjct: 690 EFIDLMK 696
>gi|253689765|ref|YP_003018955.1| DNA ligase, NAD-dependent [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756343|gb|ACT14419.1| DNA ligase, NAD-dependent [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 681
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 271/678 (39%), Positives = 407/678 (60%), Gaps = 38/678 (5%)
Query: 6 KKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTK 65
K+ + ++ RV EL++ L H Y++ D P I D +YD+L+ ELK +E +PEL+T
Sbjct: 3 KEPAEVNVVALRVAELRRVLRHHEYKYHVEDAPEIPDVEYDKLMQELKALEADHPELVTS 62
Query: 66 DSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELK 125
DS TQ VG + V H M+SLDN F +E + F+KRI + LK ++ + ELK
Sbjct: 63 DSPTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDDLTFCCELK 122
Query: 126 FDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVL 185
DG+AV+L YE G L QA+TRGDG GENIT+NI + IPL L + P +EVR EV
Sbjct: 123 LDGLAVSLLYEDGVLVQAATRGDGTTGENITSNIRTVAAIPLRLEGENIPRRVEVRGEVF 182
Query: 186 IYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM 245
+ F KLN+ G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +
Sbjct: 183 MKHSGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 242
Query: 246 PSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLS 305
P+SH E L ++ GL + + + +G ++++FY+ + R +L ++IDGVV K++ L
Sbjct: 243 PASHWERLMQFKAWGLPVSDKIKLCTGPAEVLDFYRHVEQTRSSLGFDIDGVVVKVDSLE 302
Query: 306 TQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITR 365
Q++LGF +RAPR+A+A+KF ++E LT ++ + Q+GRTG ITPVA L+PV + G+ ++
Sbjct: 303 LQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSN 362
Query: 366 ATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKI 425
ATLHN EI R +QIGD V+V R+G+VIP+I + S RP + P+ CP+C S +
Sbjct: 363 ATLHNADEIERLGLQIGDRVIVRRAGDVIPQIVGIVESERPETVQPIVFPSACPVCGSDV 422
Query: 426 IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDL 485
+E + RC+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL
Sbjct: 423 ERVEGEAVTRCTGGLI-CGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVKTPADL 481
Query: 486 YKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN 545
++++ + LDR+ K A N++ A++K+K TT +RF+YALGIR VGE+TA LA +F +
Sbjct: 482 FRLSAGIMTGLDRMGPKSATNLVNALEKAKSTTLARFLYALGIRDVGESTAANLAAHFGS 541
Query: 546 LECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRD---VGIYW-------- 594
LE +F A EE LL +P +G F+ + ++ +I +L D + I+W
Sbjct: 542 LEALFAADEETLLAVPDVGKVVAAHVRHFLEEEHNQTVIRELTDPAGINIHWPEVVVVKA 601
Query: 595 --LNNP------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEK 628
+++P G KV +SK T+ ++ G+ G KL K
Sbjct: 602 EEIDSPFAGKTVVLTGSLTILSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAK 661
Query: 629 AIKLNIKILDEKNFVKIV 646
A +L I ++DE ++++
Sbjct: 662 AQELGIPVIDEAEMIRLL 679
>gi|422909594|ref|ZP_16944238.1| DNA ligase, NAD-dependent [Vibrio cholerae HE-09]
gi|341634736|gb|EGS59482.1| DNA ligase, NAD-dependent [Vibrio cholerae HE-09]
Length = 669
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 275/670 (41%), Positives = 402/670 (60%), Gaps = 34/670 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S ++ R+TEL+K LH H + YY+ D P I D +YD+L+ EL K+E +PEL++ DS +
Sbjct: 1 MSDVAQRLTELRKTLHEHGVRYYVEDAPTIPDAEYDRLMRELLKLEAAHPELMSSDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + V H M+SLDN F D ++ F +R+T+ + ++ + E K DG+A
Sbjct: 61 RVGGRPLDAFESVVHEIPMLSLDNAFDDSELESFYRRMTDRIPAVQHSAFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTCLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL IC E +++ + ++ FY+ I +R +L YEIDGVV K++ + Q++L
Sbjct: 241 QRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTVV+ R+G+VIP+I S +L RP ++K P CP+C S + +E
Sbjct: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKPIVFPTRCPVCQSDVERVEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARCSG I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 421 EAVARCSGGLI-CQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ A+ K+K TT +F+YALGIR VGE TA LA +F +LE +
Sbjct: 480 GELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQ 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+ EQ + +P +G F Q ++ +I++L + GI W
Sbjct: 540 QASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVNSAIAG 599
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L+ + K G KV +SKNT+ + G+ G KL KA +L I++
Sbjct: 600 KVVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVF 659
Query: 638 DEKNFVKIVK 647
DE+ ++ +K
Sbjct: 660 DEQALIEFLK 669
>gi|378979983|ref|YP_005228124.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|419975767|ref|ZP_14491173.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419977676|ref|ZP_14492975.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419986857|ref|ZP_14501984.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419992643|ref|ZP_14507596.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419995582|ref|ZP_14510388.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420004657|ref|ZP_14519291.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420006590|ref|ZP_14521087.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420012410|ref|ZP_14526724.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420017973|ref|ZP_14532171.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420023939|ref|ZP_14537954.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420031307|ref|ZP_14545129.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420037154|ref|ZP_14550810.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420041101|ref|ZP_14554599.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420046863|ref|ZP_14560182.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420052573|ref|ZP_14565754.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420060561|ref|ZP_14573559.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420064032|ref|ZP_14576843.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420072164|ref|ZP_14584804.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420080597|ref|ZP_14593011.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420083645|ref|ZP_14595922.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421911207|ref|ZP_16340970.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae ST258-K26BO]
gi|421917001|ref|ZP_16346565.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae ST258-K28BO]
gi|424932393|ref|ZP_18350765.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|428940775|ref|ZP_19013846.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae VA360]
gi|364519394|gb|AEW62522.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397342174|gb|EJJ35339.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397346396|gb|EJJ39511.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397354017|gb|EJJ47084.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397360361|gb|EJJ53040.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397364802|gb|EJJ57430.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397367349|gb|EJJ59961.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397382299|gb|EJJ74462.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397386253|gb|EJJ78339.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397390688|gb|EJJ82586.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397400175|gb|EJJ91821.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397400620|gb|EJJ92261.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397405817|gb|EJJ97263.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397418636|gb|EJK09794.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397419419|gb|EJK10568.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397425475|gb|EJK16354.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397433035|gb|EJK23686.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397434591|gb|EJK25226.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397439381|gb|EJK29828.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397440505|gb|EJK30909.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397450975|gb|EJK41068.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|407806580|gb|EKF77831.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|410114743|emb|CCM83595.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae ST258-K26BO]
gi|410120718|emb|CCM89190.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae ST258-K28BO]
gi|426301605|gb|EKV63838.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae VA360]
Length = 671
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 407/664 (61%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P + D +YD+L+ +L+++E ++PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T ++ Y ELK DG+AV++ YE
Sbjct: 67 LTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDHLTYCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SHS L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHSARLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ +Y+K+ +R +L ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVFPTHCPVCQSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F LE + +AT E+
Sbjct: 486 DRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALEQATIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I+QL G+ W
Sbjct: 546 LQKVPDVGIVVATHTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 MRLL 669
>gi|52425821|ref|YP_088958.1| NAD-dependent DNA ligase LigA [Mannheimia succiniciproducens
MBEL55E]
gi|81386743|sp|Q65RN7.1|DNLJ_MANSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|52307873|gb|AAU38373.1| Lig protein [Mannheimia succiniciproducens MBEL55E]
Length = 675
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 277/666 (41%), Positives = 397/666 (59%), Gaps = 34/666 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D+P I D +YD+L +LK +E+++PEL+T DS TQ VG
Sbjct: 9 QIKQLRDTLRYHEYQYHVLDDPKIPDAEYDRLFHQLKALEQQHPELITADSPTQRVGAKP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVNLRY 135
+ H M+SLDN FSDE+ F KRI + L L + + + E K DG+AV++ Y
Sbjct: 69 LAGFAQITHELPMLSLDNAFSDEEFNAFVKRIQDRLIVLPQPLTFCCEPKLDGLAVSIFY 128
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
G L QA+TRGDG GE+IT NI I IPL L PP LEVR EV + + F +LN
Sbjct: 129 VNGVLTQAATRGDGTTGEDITLNIRTIRNIPLQLLTDNPPARLEVRGEVFMPHEGFNRLN 188
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
+ G K F NPRNAAAG LRQL+PKI + L F A+ VG G+ +P++H E L W
Sbjct: 189 ERALEHGEKTFANPRNAAAGSLRQLDPKITSRRPLVFNAYSVGIAEGVELPATHYERLQW 248
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ +G+ + E + G K++EFY+ + KR L Y+IDG V KIN + Q++LGF S+
Sbjct: 249 LKSVGIPVNSEVQLCDGSEKVLEFYRSMQQKRPTLGYDIDGTVLKINDIGLQRELGFISK 308
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A+AYKF ++E LT++ + Q+GRTG ITPVA L PV + G+T++ ATLHN EI
Sbjct: 309 APRWAIAYKFPAQEELTRLNDVEFQVGRTGAITPVAKLAPVFVAGVTVSNATLHNGDEIA 368
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
R +I IGDTVV+ R+G+VIP+I + RP +++ P CP+C SKI+ IE +AR
Sbjct: 369 RLDIAIGDTVVIRRAGDVIPQIIGVLHERRPANAQAIVFPTQCPVCGSKIVRIEGEAVAR 428
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G C AQRK L+HF SR+AM+I G+G K+IE+LV+ ++ T DL+K++ L+R
Sbjct: 429 CTGGLF-CDAQRKEALKHFVSRRAMDIDGVGAKLIEQLVDKELIRTPADLFKLDLITLMR 487
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L+R+ K A N L +++K+K TT +RFI+ALGIR VGE TA LAN+FKNL+ + A+ E
Sbjct: 488 LERMGEKSAQNALDSLEKAKNTTLARFIFALGIREVGEATALNLANHFKNLDALQAASPE 547
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--------NP--------- 598
QL + +G F + + ++ L GI+W NP
Sbjct: 548 QLQEVADVGEVVANRIYVFWREQHNIDAVNDLIAQGIHWETVETKEAGENPFKGKTVVLT 607
Query: 599 ---------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
TK G K +S T++++ G G KL KA +L + ++ E F+
Sbjct: 608 GTLTQMGRNETKDLLQQLGAKAAGSVSAKTHFVIAGDNAGSKLTKAQELGVAVMSEAEFL 667
Query: 644 KIVKGF 649
IV +
Sbjct: 668 AIVNAY 673
>gi|153826197|ref|ZP_01978864.1| DNA ligase [Vibrio cholerae MZO-2]
gi|149740057|gb|EDM54226.1| DNA ligase [Vibrio cholerae MZO-2]
Length = 669
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 275/670 (41%), Positives = 403/670 (60%), Gaps = 34/670 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S ++ R+TEL+K LH H + YY+ D P I D +YD+L+ EL ++E +PEL++ DS +
Sbjct: 1 MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + V H M+SLDN F D ++ F +R+T+ + ++ + E K DG+A
Sbjct: 61 RVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL IC E +++ + ++ FY+ I +R +L YEIDGVV K++ + Q++L
Sbjct: 241 QRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF S+E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVARAPRWAIAYKFPSQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTVV+ R+G+VIP+I S +L RP ++K P CP+C S + +E
Sbjct: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARCSG I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 421 EAVARCSGGLI-CQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ A+ K+K TT +F+YALGIR VGE TA LA +F +LE +
Sbjct: 480 GELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQ 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+ EQ + +P +G + F Q ++ +I++L + GI W
Sbjct: 540 QASLEQFIEVPDVGVVVASHLLAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAG 599
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L+ + K G KV +SKNT+ + G+ G KL KA +L I++
Sbjct: 600 KIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVF 659
Query: 638 DEKNFVKIVK 647
DE+ ++ +K
Sbjct: 660 DEQALIEFLK 669
>gi|425075557|ref|ZP_18478660.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|425086193|ref|ZP_18489286.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|405594431|gb|EKB67846.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|405605726|gb|EKB78755.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
Length = 671
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 406/664 (61%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P + D +YD+L+ +L+++E ++PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T ++ Y ELK DG+AV++ YE
Sbjct: 67 LTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDHLTYCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGMLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SHS L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHSARLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ +Y+K+ +R +L ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVFPTHCPVCQSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N+ A++K+K TTF+RF+YALGIR VGE TA LA +F LE + +AT E+
Sbjct: 486 DRMGPKSAQNVANALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALEQATIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I+QL G+ W
Sbjct: 546 LQKVPDVGIVVATHTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 MRLL 669
>gi|261493319|ref|ZP_05989845.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261310963|gb|EEY12140.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 685
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 274/669 (40%), Positives = 411/669 (61%), Gaps = 35/669 (5%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
+L ++ +++ L ++ Y++ DNP + D +YD+L+ ELK +E ++PEL++ DS TQ V
Sbjct: 17 ELVEKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELISADSPTQRV 76
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN-IEYIAELKFDGIAV 131
G V H M+SLDN FSDED+ F +R+ + + + + +E+ E K DG+AV
Sbjct: 77 GAKPLAGFAQVTHEIPMLSLDNAFSDEDLDGFLRRMESYITASPSQLEFCCEPKLDGLAV 136
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
++ YE G L +A+TRGDG GE IT NI I IPL LN PP LEVR EV + + F
Sbjct: 137 SILYENGILTRAATRGDGTTGEEITANIRTIRNIPLKLNTTNPPARLEVRGEVFMPQSGF 196
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHS 250
+LN+ G K F+NPRNAAAG LRQL+PKI + + L A+G+G + +P++H
Sbjct: 197 NELNEKALAKGEKTFSNPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATHF 256
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
E L W + +G+ + E ++ G L+ +Y +I KR L Y+IDG V K+N ++ Q++L
Sbjct: 257 ERLQWLKSLGIPVNNEIRLVQGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIALQEQL 316
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF SR+ R+A+AYKF ++E +T +K ++ Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 317 GFISRSSRWAIAYKFPAQEEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNATLHN 376
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R I IGDTV++ R+G+VIP+IT +L RP ++K + P CPIC+S + +E
Sbjct: 377 GDEIERLGIVIGDTVIIRRAGDVIPQITGVVLERRPENAKKIEFPTACPICHSAVTRVEG 436
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+G C AQRK L+HF SRKAM+I G+G+K+IE+L+ ++ T DL+K++
Sbjct: 437 EAVARCTGGLF-CEAQRKEALKHFVSRKAMDIDGVGEKLIEQLMARELIETPADLFKLDH 495
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L+RL+R+ K A N L +I+K+K TT RF+++LGIR VGE TA LAN+F +LE +
Sbjct: 496 TTLMRLERMGEKSAQNALNSIEKAKNTTLPRFLFSLGIREVGEATALNLANHFGSLEAIR 555
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--------NP---- 598
+AT EQL + +G + F +P + ++ L G+ W N NP
Sbjct: 556 QATFEQLKEVQDVGEVVANRIVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDK 615
Query: 599 --------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
+ G KV +S T+YL+ G+K G KL KA +L I+IL
Sbjct: 616 NVVLTGTLTQLTRDEAKALLQSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILS 675
Query: 639 EKNFVKIVK 647
E+ F+++ +
Sbjct: 676 EQQFIELTQ 684
>gi|166216290|sp|Q0AHH6.2|DNLJ_NITEC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
Length = 683
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 280/674 (41%), Positives = 401/674 (59%), Gaps = 43/674 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ L+ + H+ YY+ D PII D YD+L L+++E++YP L+T DS TQ VG
Sbjct: 10 RLKALRSTIALHDFHYYVQDAPIIPDADYDKLFRTLQQLEQQYPHLITPDSPTQRVGAPP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + H M+SL N F++++ I F+KRI L + + + Y E KFDG+AV+L Y
Sbjct: 70 LKVFARLTHQTPMLSLTNAFTEDEAIAFDKRIREALNVDQ-VNYAVEPKFDGLAVSLVYT 128
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +TRGDG GE+IT N+ I IPL L + EVR EV++ K DF LN+
Sbjct: 129 NGILTNGATRGDGYTGEDITLNLRTIPSIPLRLQTATVTDQFEVRGEVVMLKADFEHLNE 188
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP--SSHSELLN 254
+ + G K F NPRNAAAG LRQL+ I + L FFA+ L + P S HSE+L+
Sbjct: 189 QQRNKGEKLFANPRNAAAGSLRQLDSNITAARKLTFFAYD-AVLSHKDQPFFSKHSEILD 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
+ + + + +GV L+ +Y ++ R +LPYEIDGVVYK++ L+ Q+ LG+ S
Sbjct: 248 YLKSQQFLVAQQNGTTTGVAGLLTYYHEMGALRLSLPYEIDGVVYKVDNLTQQETLGYVS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPRFA+A+KF ++EA T++ I IQ+GRTG +TPVA L PV + G+T+T ATLHNE E+
Sbjct: 308 RAPRFAIAHKFPAQEASTELLTIEIQVGRTGALTPVARLAPVFVGGVTVTNATLHNEDEV 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
RK I IGDTV+V R+G+VIP++ + I RP ++ F +P+ CP+C SK + +
Sbjct: 368 QRKQIMIGDTVIVRRAGDVIPEVVAVIPEQRPAHAQPFIMPDHCPVCGSKAARLPGEAVT 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+G + C AQRK + HF+SR+A++I GLG+K+I++L++ +V T DLYK+N L
Sbjct: 428 RCTGG-LYCPAQRKQAIWHFASRRALDIDGLGEKLIDQLIDRELVHTPADLYKLNIDTLA 486
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
L+R++ K A N++ AI+ SK TT RFIYALGIRHVGE TAK LAN +L+ +
Sbjct: 487 SLERMAEKSARNLVTAIEHSKKTTLPRFIYALGIRHVGEATAKALANQASHLDQLMTLDI 546
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPN--------------- 599
EQL IP +G ++ I F ++ +R +I QL D G+ W PN
Sbjct: 547 EQLQQIPDVGPIVAQSIIDFFSEAHNREVIRQLLDSGLQW-EIPNHGVQQSEQTNSAVSG 605
Query: 600 ----------------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
+GGKV +S T+Y+V G PG K KAI L I +L
Sbjct: 606 KTFVLTGTLPTMTRDQAKIKIEQQGGKVTGSVSSATSYVVAGSDPGSKYAKAIGLGISVL 665
Query: 638 DEKNFVKIVKGFST 651
DE + +++ ST
Sbjct: 666 DEDQLLSLLQNIST 679
>gi|365143508|ref|ZP_09348343.1| DNA ligase [Klebsiella sp. 4_1_44FAA]
gi|363649246|gb|EHL88368.1| DNA ligase [Klebsiella sp. 4_1_44FAA]
Length = 671
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 265/664 (39%), Positives = 408/664 (61%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P + D +YD+L+ +L+++E ++PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T ++ Y ELK DG+AV++ YE
Sbjct: 67 LTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDHLTYCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SHS L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHSARLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ +Y+K+ +R +L ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVFPTHCPVCQSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F LE + +A+ E+
Sbjct: 486 DRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALEQASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I+QL G+ W
Sbjct: 546 LQKVPDVGIVVATHTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G++ G KL KA +L I+++DE
Sbjct: 606 TGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEEAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 MRLL 669
>gi|423104157|ref|ZP_17091859.1| DNA ligase [Klebsiella oxytoca 10-5242]
gi|376384020|gb|EHS96746.1| DNA ligase [Klebsiella oxytoca 10-5242]
Length = 674
Score = 536 bits (1381), Expect = e-149, Method: Compositional matrix adjust.
Identities = 265/664 (39%), Positives = 404/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E ++PEL+T DS TQ VG
Sbjct: 7 KLTELRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELEAQHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + H M+SLDN F +E + FNKR+ + LK T N+ Y ELK DG+AV++ YE
Sbjct: 67 LASFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNTDNLTYCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE+IT+N+ I IPL L P+ LEVR EV + + F K+N+
Sbjct: 127 NGLLVQAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPQRLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SHS L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHSARLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +++ +Y+++ R L ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KSWGLPVSERVKLCHTPEEVLTYYRQVEEDRPKLGFDIDGVVIKVDSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C+S + +E ++ RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREIVFPTHCPVCHSDVERVEGEVVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFQLTPGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++KSK TTF+RF+YALGIR VGE TA LA +F +E + +A+ +
Sbjct: 486 DRMGPKSAQNVVDALEKSKETTFARFLYALGIREVGEATAAGLAAHFGTIEALEQASIDD 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I+QLR G+ W
Sbjct: 546 LQKVPDVGIVVATHVRNFFAEESNREVIAQLRKEGVRWPAPVVVNAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQLSRDDAKARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEDEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|261496584|ref|ZP_05992964.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261307787|gb|EEY09110.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype A2
str. OVINE]
Length = 685
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 273/669 (40%), Positives = 411/669 (61%), Gaps = 35/669 (5%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
+L ++ +++ L ++ Y++ DNP + D +YD+L+ ELK +E ++PEL++ DS TQ V
Sbjct: 17 ELVEKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELISADSPTQRV 76
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN-IEYIAELKFDGIAV 131
G V H M+SLDN FSDED+ F +R+ + + + + +E+ E K DG+AV
Sbjct: 77 GAKPLAGFAQVTHEIPMLSLDNAFSDEDLDGFLRRMESYITASPSQLEFCCEPKLDGLAV 136
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
++ YE G L +A+TRGDG GE IT NI I IPL LN PP LEVR EV + + F
Sbjct: 137 SILYENGILTRAATRGDGTTGEEITANIRTIRNIPLKLNTTNPPARLEVRGEVFMPQSGF 196
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHS 250
+LN+ G K F NPRNAAAG LRQL+PKI + + L A+G+G + +P++H
Sbjct: 197 NELNEKALAKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATHF 256
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
E L W + +G+ + E ++ G L+ +Y +I KR L Y+IDG V K+N ++ Q++L
Sbjct: 257 ERLQWLKSLGIPVNNEIRLVQGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIALQEQL 316
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF SR+ R+A+AYKF ++E +T +K ++ Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 317 GFISRSSRWAIAYKFPAQEEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNATLHN 376
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R I IGDTV++ R+G+VIP+IT +L RP ++K + P CPIC+S + +E
Sbjct: 377 GDEIERLGIVIGDTVIIRRAGDVIPQITGVVLERRPENAKKIEFPTACPICHSAVTRVEG 436
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+G C AQRK L+HF SRKAM+I G+G+K+IE+L+ ++ T DL+K++
Sbjct: 437 EAVARCTGGLF-CEAQRKEALKHFVSRKAMDIDGVGEKLIEQLMARELIETPADLFKLDH 495
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L+RL+R+ K A N L +I+K+K TT RF+++LGIR VGE TA LAN+F +LE +
Sbjct: 496 TTLMRLERMGEKSAQNALNSIEKAKNTTLPRFLFSLGIREVGEATALNLANHFGSLEAIR 555
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------LNNP---- 598
+AT EQL + +G + F +P + ++ L G+ W ++NP
Sbjct: 556 QATFEQLKEVQDVGEVVANRIVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDK 615
Query: 599 --------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
+ G KV +S T+YL+ G+K G KL KA +L I+IL
Sbjct: 616 NVVLTGTLTQLTRDEAKALLQSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILS 675
Query: 639 EKNFVKIVK 647
E+ F+++ +
Sbjct: 676 EQQFIELTQ 684
>gi|419839521|ref|ZP_14362928.1| DNA ligase (NAD+) [Haemophilus haemolyticus HK386]
gi|386909381|gb|EIJ74056.1| DNA ligase (NAD+) [Haemophilus haemolyticus HK386]
Length = 672
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 279/669 (41%), Positives = 401/669 (59%), Gaps = 34/669 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++ L+K L ++ Y++ DNP + D++YD+L +LK +E ++PE LT DS TQ
Sbjct: 1 MTNIQTQIDNLRKTLRQYEYEYHVLDNPTVPDSEYDRLFHQLKALELEHPEFLTSDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK-LTKNIEYIAELKFDGI 129
VG + H M+SLDN FSDE+ F KRI + L L K + + E K DG+
Sbjct: 61 RVGAKPLSGFSQIRHEIPMLSLDNAFSDEEFNAFVKRIEDRLIILPKPLTFCCEPKLDGL 120
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G L QA+TRGDG GE+IT NI I IPL L PP LEVR EV +
Sbjct: 121 AVSILYVNGILTQAATRGDGTTGEDITANIRTIRNIPLQLLTDNPPARLEVRGEVFMPHA 180
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LN+Y G K F NPRNAAAG LRQL+P I + L A+G+G G+ +P++H
Sbjct: 181 GFERLNEYALEHGEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGIELPNTH 240
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
L W + IG+ + E + +G N++++FY+ I KR +L Y+IDG V KIN ++ Q +
Sbjct: 241 YARLQWLKSIGIPVNPEIRLCNGTNEVLDFYRDIQNKRSSLGYDIDGTVLKINDIALQNE 300
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF S+APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 301 LGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 360
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R NI IGDTVV+ R+G+VIP+I + RP+++K P CP+C+S+II IE
Sbjct: 361 NGDEIERLNIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIE 420
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++
Sbjct: 421 GEAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLD 479
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L RL+R+ K A N L +++K+K TT +RFI+ALGIR VGE TA LAN+FK L+ +
Sbjct: 480 LTTLTRLERMGAKSAENALNSLEKAKSTTLARFIFALGIREVGEATALNLANHFKTLDAL 539
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
A E+L +P +G F + + ++ L G++W
Sbjct: 540 KAADLEELQQVPDVGEVVANRIFVFWRETHNVAVVDDLIAQGVHWETVEVKEANENLFKD 599
Query: 595 ----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L T+ G KV +S T++++ G G KL KA +LNI +L
Sbjct: 600 KTVVLTGTLTQMGRNEAKSLLQQLGAKVSGSVSSKTDFVIAGDAAGSKLTKAQELNITVL 659
Query: 638 DEKNFVKIV 646
E+ F++ V
Sbjct: 660 TEEEFLEQV 668
>gi|209764254|gb|ACI80439.1| DNA ligase [Escherichia coli]
Length = 671
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 269/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTYCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+IE+LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIEQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|262042032|ref|ZP_06015211.1| DNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
gi|259040623|gb|EEW41715.1| DNA ligase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC
13884]
Length = 671
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 265/664 (39%), Positives = 407/664 (61%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P + D +YD+L+ +L+++E ++PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T ++ Y ELK DG+AV++ YE
Sbjct: 67 LTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDHLTYCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SHS L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHSARLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ +Y+K+ +R +L ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVFPTHCPVCQSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F LE + +A+ E+
Sbjct: 486 DRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALEQASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I+QL G+ W
Sbjct: 546 LQKVPDVGIVVAAHTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 MRLL 669
>gi|152979719|ref|YP_001345348.1| NAD-dependent DNA ligase LigA [Actinobacillus succinogenes 130Z]
gi|190359224|sp|A6VR16.1|DNLJ_ACTSZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|150841442|gb|ABR75413.1| DNA ligase, NAD-dependent [Actinobacillus succinogenes 130Z]
Length = 672
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 275/667 (41%), Positives = 398/667 (59%), Gaps = 34/667 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ DNP I D++YD+L LK +E+++PEL++ DS TQ VG
Sbjct: 7 QINQLRNTLRHHEYQYHVLDNPEIPDSEYDRLFHRLKALEQQHPELISADSPTQRVGAKP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVNLRY 135
+ H M+SLDN FSDE+ F KRI L L N+E+ E K DG+AV++ Y
Sbjct: 67 LAGFAQITHELPMLSLDNVFSDEEFYAFVKRIQERLITLPDNLEFCCEPKLDGLAVSILY 126
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
E G L QA+TRGDG GE+IT NI I IPL L PP LEVR EV + ++ F +LN
Sbjct: 127 ENGRLVQAATRGDGTTGEDITLNIRTIRNIPLQLLTDNPPVRLEVRGEVFMPQEGFDRLN 186
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
+ G K F NPRNAAAG LRQL+PKI + L + A+ +G G ++P +H E L W
Sbjct: 187 EAALARGEKTFANPRNAAAGSLRQLDPKITSQRPLVWNAYSIGIAEGADLPPTHYERLQW 246
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ IG+ + GE + G +++FY+ I KR L Y+IDG V K+N ++ Q++LGF S+
Sbjct: 247 LKSIGIPVNGEIRLCRGAENVLKFYRTIQEKRPELGYDIDGTVLKVNEIALQERLGFISK 306
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI
Sbjct: 307 APRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTVSNATLHNGDEIA 366
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
R +I IGDTV+V R+G+VIP+I + RP +++ P +CP+C+S I+ IE +AR
Sbjct: 367 RLDIAIGDTVIVRRAGDVIPQIIGVVHDRRPPNAEPIIFPTLCPVCHSAIVRIEGEAVAR 426
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G C AQRK L+HF SR+AM+I G+G K+IE+LV+ ++ T DL+K++ L+R
Sbjct: 427 CTGGLF-CDAQRKESLKHFVSRRAMDIDGVGAKLIEQLVDRELIRTPADLFKLDLITLMR 485
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L+R+ K A L +++K+K TT +RFI+ALGIR VGE TA LAN+FKNL + A E
Sbjct: 486 LERMGEKSAQKALDSLEKAKKTTLARFIFALGIREVGEATALNLANFFKNLTALQTADLE 545
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--------NP--------- 598
QL + +G F + + +++ L G++W + NP
Sbjct: 546 QLQAVSDVGEVVANRIYVFWREQHNIDVVNDLIAQGVHWDDVEEKQVNENPFKEKTVVLT 605
Query: 599 ---------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +S T+ ++ G G KL KA L + ++ E F+
Sbjct: 606 GTLSQMGRNEAKALLQQMGAKVAGSVSAKTHIVIAGDSAGSKLSKAQDLGVAVMSEAEFL 665
Query: 644 KIVKGFS 650
+IV FS
Sbjct: 666 EIVNSFS 672
>gi|402845616|ref|ZP_10893952.1| DNA ligase (NAD+) [Klebsiella sp. OBRC7]
gi|402270897|gb|EJU20154.1| DNA ligase (NAD+) [Klebsiella sp. OBRC7]
Length = 674
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 265/664 (39%), Positives = 404/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E ++PEL+T DS TQ VG
Sbjct: 7 KLTELRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELEAQHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + H M+SLDN F +E + FNKR+ + LK T N+ Y ELK DG+AV++ YE
Sbjct: 67 LASFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNTDNLTYCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE+IT+N+ I IPL L P+ LEVR EV + + F K+N+
Sbjct: 127 NGLLVQAATRGDGATGEDITSNVRTIRAIPLKLRGDNIPQRLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SHS L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHSARLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +++ +Y+++ R L ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KSWGLPVSERVKLCHTPEEVLTYYRQVEEDRPKLGFDIDGVVIKVDSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C+S + +E ++ RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREIVFPTHCPVCHSDVERVEGEVVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFQLTPGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++KSK TTF+RF+YALGIR VGE TA LA +F +E + +A+ +
Sbjct: 486 DRMGPKSAQNVVDALEKSKETTFARFLYALGIREVGEATAAGLAAHFGTIEALEQASIDD 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I+QLR G+ W
Sbjct: 546 LQKVPDVGIVVATHVRNFFAEESNREVIAQLRKEGVRWPAPVVVNAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQLSRDDAKARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEDEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|329297490|ref|ZP_08254826.1| NAD-dependent DNA ligase LigA [Plautia stali symbiont]
Length = 672
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 266/671 (39%), Positives = 402/671 (59%), Gaps = 36/671 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++T L+ L H Y++ D P I D +YD+L+ EL+++E +P+L+T DS TQ
Sbjct: 1 MTSVQEQITALRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELESAHPDLITPDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + V H M+SLDN F + + FNKR+ + LK T N+ Y ELK DG+A
Sbjct: 61 RVGAAPLATFEQVRHEVPMLSLDNTFDEAGFLAFNKRMQDRLKSTDNLTYCCELKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ IH IPL L+ P +EVR EV + +
Sbjct: 121 VSLLYENGLLVRAATRGDGTTGENITANVRTIHAIPLRLHGDNIPARVEVRGEVFMTESG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F KLN+ G K F NPRNAAAG LRQL+P+I + L FF +G G L G MP+SH
Sbjct: 181 FEKLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEMPASHW 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ L ++ GL + ++ ++++ FY+++ R +L ++IDGVV K++ + Q++L
Sbjct: 241 QRLQQFKAWGLPVSDRIRLVHTADEVLAFYRQVEQDRPSLGFDIDGVVIKVDSQALQEQL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN
Sbjct: 301 GFVARAPRWAVAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R ++IGD VV+ R+G+VIP++ + + S RP D++ P+ CP+C S + +E
Sbjct: 361 ADEIARLGLRIGDKVVIRRAGDVIPQVVNVVESERPADAREIVFPSHCPVCGSDVESVEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ RC+G I C AQRK L+HF S +AM++ G+G K+I++LV V T DL+++
Sbjct: 421 EAVTRCTGGLI-CGAQRKEALKHFVSHRAMDVDGMGDKIIDQLVEKEYVKTPADLFRLTA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L LDR+ K A N++ A++K+KLTT RF+YALGIR VGE TA LAN+F LE +
Sbjct: 480 GKLTGLDRMGPKSAQNVVDALEKAKLTTLPRFLYALGIREVGEATAANLANHFGELEKVM 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRD-VGIYW--------------- 594
A + L+ + +G F+ + +R +I QL D VG++W
Sbjct: 540 NADLDALIAVQDVGKVVAAHVRNFMEEESNREVIRQLTDEVGVHWPAVVVVKAEEIDSPF 599
Query: 595 -------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIK 635
+N + K G KV +SK T+ L+ G+ G KL KA +L I+
Sbjct: 600 AGKTVVLTGSLSQMNRDDAKARLTALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIE 659
Query: 636 ILDEKNFVKIV 646
++DE ++++
Sbjct: 660 VIDEAEMIRLL 670
>gi|330013648|ref|ZP_08307732.1| DNA ligase [Klebsiella sp. MS 92-3]
gi|328533421|gb|EGF60158.1| DNA ligase [Klebsiella sp. MS 92-3]
Length = 671
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 265/664 (39%), Positives = 406/664 (61%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P + D +YD+L+ +L+++E ++PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T ++ Y ELK DG+AV++ YE
Sbjct: 67 LTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDHLTYCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SHS L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHSARLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ +Y+K+ +R +L ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLELQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVFPTHCPVCQSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLTAGELTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F LE + +A+ E+
Sbjct: 486 DRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALEQASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I+QL G+ W
Sbjct: 546 LQKVPDVGIVVATHTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 MRLL 669
>gi|114330949|ref|YP_747171.1| NAD-dependent DNA ligase [Nitrosomonas eutropha C91]
gi|114307963|gb|ABI59206.1| DNA ligase, NAD-dependent [Nitrosomonas eutropha C91]
Length = 715
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 280/674 (41%), Positives = 401/674 (59%), Gaps = 43/674 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ L+ + H+ YY+ D PII D YD+L L+++E++YP L+T DS TQ VG
Sbjct: 42 RLKALRSTIALHDFHYYVQDAPIIPDADYDKLFRTLQQLEQQYPHLITPDSPTQRVGAPP 101
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + H M+SL N F++++ I F+KRI L + + + Y E KFDG+AV+L Y
Sbjct: 102 LKVFARLTHQTPMLSLTNAFTEDEAIAFDKRIREALNVDQ-VNYAVEPKFDGLAVSLVYT 160
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +TRGDG GE+IT N+ I IPL L + EVR EV++ K DF LN+
Sbjct: 161 NGILTNGATRGDGYTGEDITLNLRTIPSIPLRLQTATVTDQFEVRGEVVMLKADFEHLNE 220
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP--SSHSELLN 254
+ + G K F NPRNAAAG LRQL+ I + L FFA+ L + P S HSE+L+
Sbjct: 221 QQRNKGEKLFANPRNAAAGSLRQLDSNITAARKLTFFAYD-AVLSHKDQPFFSKHSEILD 279
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
+ + + + +GV L+ +Y ++ R +LPYEIDGVVYK++ L+ Q+ LG+ S
Sbjct: 280 YLKSQQFLVAQQNGTTTGVAGLLTYYHEMGALRLSLPYEIDGVVYKVDNLTQQETLGYVS 339
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPRFA+A+KF ++EA T++ I IQ+GRTG +TPVA L PV + G+T+T ATLHNE E+
Sbjct: 340 RAPRFAIAHKFPAQEASTELLTIEIQVGRTGALTPVARLAPVFVGGVTVTNATLHNEDEV 399
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
RK I IGDTV+V R+G+VIP++ + I RP ++ F +P+ CP+C SK + +
Sbjct: 400 QRKQIMIGDTVIVRRAGDVIPEVVAVIPEQRPAHAQPFIMPDHCPVCGSKAARLPGEAVT 459
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+G + C AQRK + HF+SR+A++I GLG+K+I++L++ +V T DLYK+N L
Sbjct: 460 RCTGG-LYCPAQRKQAIWHFASRRALDIDGLGEKLIDQLIDRELVHTPADLYKLNIDTLA 518
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
L+R++ K A N++ AI+ SK TT RFIYALGIRHVGE TAK LAN +L+ +
Sbjct: 519 SLERMAEKSARNLVTAIEHSKKTTLPRFIYALGIRHVGEATAKALANQASHLDQLMTLDI 578
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPN--------------- 599
EQL IP +G ++ I F ++ +R +I QL D G+ W PN
Sbjct: 579 EQLQQIPDVGPIVAQSIIDFFSEAHNREVIRQLLDSGLQW-EIPNHGVQQSEQTNSAVSG 637
Query: 600 ----------------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
+GGKV +S T+Y+V G PG K KAI L I +L
Sbjct: 638 KTFVLTGTLPTMTRDQAKIKIEQQGGKVTGSVSSATSYVVAGSDPGSKYAKAIGLGISVL 697
Query: 638 DEKNFVKIVKGFST 651
DE + +++ ST
Sbjct: 698 DEDQLLSLLQNIST 711
>gi|444378073|ref|ZP_21177278.1| DNA ligase [Enterovibrio sp. AK16]
gi|443677875|gb|ELT84551.1| DNA ligase [Enterovibrio sp. AK16]
Length = 670
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 272/668 (40%), Positives = 404/668 (60%), Gaps = 35/668 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+++ ++ LK +L+ H YY+ D P + D +YD+++ EL IE ++PEL+ DS +Q
Sbjct: 3 TEIQQKLQSLKTQLNYHGHLYYVEDKPELPDAEYDRMMQELLAIEAEHPELVMADSPSQR 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + V H M+SLDN F DE++ F KR+ + L ++ + + E K DG+AV
Sbjct: 63 VGGAPLGAFEQVRHEIPMLSLDNAFDDEELEAFEKRMKDRLNISGDFIFSCEPKLDGLAV 122
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L QA+TRGDG GENIT N+ I +PL L + P+ LEVR EV + K+ F
Sbjct: 123 SLMYENGVLVQAATRGDGATGENITHNVRTIRNVPLQLQGEGWPQRLEVRGEVFMPKEGF 182
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN+ G K F NPRNAAAG LRQL+PKI + L F+A+ VG + + SH
Sbjct: 183 EKLNEKNIKKGEKAFANPRNAAAGSLRQLDPKITATRPLRFYAYSVGVMSEV-FGDSHIG 241
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
L + G+ + E + G+ + +Y+ I +R +LPYEIDGVV K++ + TQ++LG
Sbjct: 242 RLEQLKIWGIPLSPEVKKVEGIENVKAYYQDIGARRNDLPYEIDGVVIKVDAIDTQERLG 301
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+AYKF ++E +T ++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 302 FVARAPRWAIAYKFPAQEEITVLQDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNA 361
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI R ++IGDTV++ R+G+VIP+I S + S RP+D+K P+ CP+C S + +E
Sbjct: 362 DEIARLGVKIGDTVIIRRAGDVIPQIVSVVDSRRPDDAKDVVFPDACPVCQSHVERVEGE 421
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC+G I C AQRK ++HFSSRKA++I GLG K++E+L+ ++ T DL+K+
Sbjct: 422 AVARCTGGLI-CRAQRKEAIKHFSSRKALDIDGLGDKIVEQLIEKELITTPADLFKLTAG 480
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ LDR+ K A N++ A+ K+K TT +RFIY+LGIR VGE TA LAN+F + + +
Sbjct: 481 QVTMLDRMGPKSAQNLVDALAKAKETTLARFIYSLGIREVGEATAANLANHFFTFDAIRE 540
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL-------NNPNTKGGK 604
A EEQL+ + +G K + F N+ ++ +I L + GI W N P GK
Sbjct: 541 AKEEQLVEVQDVGIIVAKHVVNFFNEEHNKEVIDALLESGITWPAIEQRDENEPQPLAGK 600
Query: 605 VV--------------------------NFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
+V +S T+ L+ G+ G KL KA +L I+ILD
Sbjct: 601 IVVLTGTLSQMSRNDAKAALQALGAKVTGSVSAKTDLLIAGEAAGSKLAKAQQLGIEILD 660
Query: 639 EKNFVKIV 646
E V+++
Sbjct: 661 EDGMVRLL 668
>gi|390436028|ref|ZP_10224566.1| NAD-dependent DNA ligase LigA [Pantoea agglomerans IG1]
Length = 675
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 396/664 (59%), Gaps = 36/664 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+TEL+ L H Y++ D P + D +YD+L+ EL+++EE++P+L+T DS TQ VG
Sbjct: 8 MTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRQLEEEHPDLITPDSPTQRVGAAPL 67
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
+ V H M+SLDN F + + FNKR+ + LK + +I Y ELK DG AV+L YE
Sbjct: 68 TVFEQVRHEVPMLSLDNAFDEATFMAFNKRVQDRLKSSDDITYCCELKLDGAAVSLMYEN 127
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L QA+TRGDG GENIT N+ I IPL L P LEVR E+ + ++ F KLN+
Sbjct: 128 GLLVQAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRGEIFMTQRGFEKLNEE 187
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
K F NPRNAAAG LRQL+P+I + L FF +G G L G MP SH L ++
Sbjct: 188 ARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEMPHSHMGRLQQFK 247
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
GL + ++ + + FY+ I +R NL ++IDGVV K++ Q+KLGF +RAP
Sbjct: 248 AWGLPVSDRIKLVHNAEEALAFYRDIEQQRPNLGFDIDGVVIKVDSQELQEKLGFVARAP 307
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+A+KF ++E LT ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 308 RWAIAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIERL 367
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
++IGD VV+ R+G+VIP++ + +L+ RP ++ P CP+C S++ +E + RC+
Sbjct: 368 GLRIGDRVVIRRAGDVIPQVVNVVLAERPEQTREVLFPAHCPVCGSEVERVEGESVTRCT 427
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++ L LD
Sbjct: 428 GGLI-CGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVNTPADLFRLTAGKLTGLD 486
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+ K A N++ A++K+K TT +RF+YALGIR VGE TA LAN+F L+ + A E L
Sbjct: 487 RMGPKSAQNVVDALEKAKSTTLARFLYALGIREVGEATAANLANHFGELQKVMDADLEAL 546
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW---------------------- 594
+ +P +G F+ + +R +I QL D+GI+W
Sbjct: 547 IAVPDVGKVVAAHVRNFMEEESNREVIRQLVEDIGIHWPQVVVVRAEEIDSPFAGKTVVL 606
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+N + K G KV +SK T+ L+ G+ G KL KA +L I+++DE
Sbjct: 607 TGSLSQMNRDDAKAQLIALGAKVSGSVSKKTDLLIAGEAAGSKLAKAAELGIEVIDEAEM 666
Query: 643 VKIV 646
++++
Sbjct: 667 IRLL 670
>gi|452745820|ref|ZP_21945652.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype 6
str. H23]
gi|452085959|gb|EME02350.1| NAD-dependent DNA ligase LigA [Mannheimia haemolytica serotype 6
str. H23]
Length = 685
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 273/669 (40%), Positives = 411/669 (61%), Gaps = 35/669 (5%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
+L ++ +++ L ++ Y++ DNP + D +YD+L+ ELK +E ++PEL++ DS TQ V
Sbjct: 17 ELVEKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELISADSPTQRV 76
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN-IEYIAELKFDGIAV 131
G V H M+SLDN FSDED+ F +R+ + + + + +E+ E K DG+AV
Sbjct: 77 GAKPLAGFAQVTHEIPMLSLDNAFSDEDLDGFLRRMESYITASPSQLEFCCEPKLDGLAV 136
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
++ YE G L +A+TRGDG GE IT NI I IPL LN PP LEVR EV + + F
Sbjct: 137 SILYENGILTRAATRGDGTTGEEITANIRTIRNIPLKLNTTNPPARLEVRGEVFMPQSGF 196
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHS 250
+LN+ G K F NPRNAAAG LRQL+PKI + + L A+G+G + +P++H
Sbjct: 197 NELNEKALAKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATHF 256
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
E L W + +G+ + E ++ G L+ +Y +I KR L Y+IDG V K+N ++ Q++L
Sbjct: 257 ERLQWLKSLGIPVNNEIRLVQGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIALQEQL 316
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF SR+ R+A+AYKF ++E +T +K ++ Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 317 GFISRSSRWAIAYKFPAQEEMTILKEVDFQVGRTGAITPVAKLEPVFVAGVTVSNATLHN 376
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R I IGDTV++ R+G+VIP+IT +L RP ++K + P CPIC+S + +E
Sbjct: 377 GDEIERLGIVIGDTVIIRRAGDVIPQITGVMLERRPENAKKIEFPTACPICHSAVTRVEG 436
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+G C AQRK L+HF SRKAM+I G+G+K+IE+L+ ++ T DL+K++
Sbjct: 437 EAVARCTGGLF-CEAQRKEALKHFVSRKAMDIDGVGEKLIEQLMARELIETPADLFKLDH 495
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L+RL+R+ K A N L +I+K+K TT RF+++LGIR VGE TA LAN+F +LE +
Sbjct: 496 TTLMRLERMGEKSAQNALNSIEKAKNTTLPRFLFSLGIREVGEATALNLANHFGSLEAIR 555
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------LNNP---- 598
+AT EQL + +G + F +P + ++ L G+ W ++NP
Sbjct: 556 QATFEQLKEVQDVGEVVANRIVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDK 615
Query: 599 --------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
+ G KV +S T+YL+ G+K G KL KA +L I+IL
Sbjct: 616 NVVLTGTLTQLTRDEAKALLQSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILS 675
Query: 639 EKNFVKIVK 647
E+ F+++ +
Sbjct: 676 EQQFIELTQ 684
>gi|397164341|ref|ZP_10487796.1| DNA ligase, NAD-dependent [Enterobacter radicincitans DSM 16656]
gi|396093489|gb|EJI91044.1| DNA ligase, NAD-dependent [Enterobacter radicincitans DSM 16656]
Length = 672
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 266/665 (40%), Positives = 400/665 (60%), Gaps = 36/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P + D +YD+L+ EL+++E ++PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F +E + FNKR+ + LK T + Y ELK DG+AV++ YE
Sbjct: 67 LTAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDALTYCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLIRAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQSGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SH L +
Sbjct: 187 EARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPRSHMGRLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + ++ FY+++ R L ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 KAWGLPVSERIRLCDSPEAVLAFYRQVENDRPTLGFDIDGVVIKVDSLELQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIDR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +L+ RP +++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLAERPEETREVIFPQHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVQTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A NI+ A++ +K TTF+RF+YALGIR VGE TA LA YF L+ + A+ ++
Sbjct: 486 DRMGPKSAQNIITALENAKETTFARFLYALGIREVGEATAAGLAAYFGTLDALMAASVDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW----------LNNP------- 598
L +P +G K F N+ +R +I+QL +VGI+W +++P
Sbjct: 546 LQKVPDVGVVVAKHVNNFFNEESNREVIAQLVGEVGIHWPAPLVVNAEEIDSPFAGKTVV 605
Query: 599 -----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 LTGSLSQLSRDEAKARLTALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAE 665
Query: 642 FVKIV 646
++++
Sbjct: 666 MIRLL 670
>gi|227114832|ref|ZP_03828488.1| NAD-dependent DNA ligase LigA [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 684
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 270/678 (39%), Positives = 404/678 (59%), Gaps = 38/678 (5%)
Query: 6 KKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTK 65
K+ + + RV EL++ L H Y++ D P I D +YD+L+ ELK +E +PEL+T
Sbjct: 6 KEPAEVNAAALRVAELRRVLRHHEYKYHVEDAPEIPDIEYDKLMQELKALEADHPELVTS 65
Query: 66 DSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELK 125
DS TQ VG + V H M+SLDN F +E + F+KRI + LK ++ + ELK
Sbjct: 66 DSPTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDDLTFCCELK 125
Query: 126 FDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVL 185
DG+AV+L YE G L QA+TRGDG GENIT+NI + IPL L P +EVR EV
Sbjct: 126 LDGLAVSLLYENGVLVQAATRGDGTTGENITSNIRTVAAIPLRLEGDNIPRRVEVRGEVF 185
Query: 186 IYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM 245
+ F KLN+ G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +
Sbjct: 186 MKHSGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 245
Query: 246 PSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLS 305
P+SH E L ++ GL + + +G ++++FY+++ R +L ++IDGVV K++ L
Sbjct: 246 PASHWERLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSSLGFDIDGVVVKVDSLE 305
Query: 306 TQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITR 365
Q++LGF +RAPR+A+A+KF ++E LT ++ + Q+GRTG ITPVA L+PV + G+ ++
Sbjct: 306 LQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSN 365
Query: 366 ATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKI 425
ATLHN EI R +QIGD V+V R+G+VIP+I + S RP + P CP+C S +
Sbjct: 366 ATLHNADEIERLGLQIGDRVIVRRAGDVIPQIVGIVESERPETVRPIVFPAACPVCGSDV 425
Query: 426 IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDL 485
+E + RC+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL
Sbjct: 426 ERVEGEAVTRCTGGLI-CGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVKTPADL 484
Query: 486 YKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN 545
++++ + LDR+ K A N++ A++K+K TT +RF+YALGIR VGE+TA LA +F +
Sbjct: 485 FRLSAGIMTGLDRMGPKSATNLVNALEKAKSTTLARFLYALGIRDVGESTAANLAAHFGS 544
Query: 546 LECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRD---VGIYW-------- 594
LE +F A E+ LL +P +G F+ + ++ +I +L D + I+W
Sbjct: 545 LEALFAADEDALLEVPDVGKVVAAHVRHFLEEEHNQTVIRELTDPAGINIHWPEVQVVNA 604
Query: 595 --LNNP------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEK 628
+++P G KV +SK T+ ++ G+ G KL K
Sbjct: 605 EEIDSPFAGKTVVLTGSLSILSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAK 664
Query: 629 AIKLNIKILDEKNFVKIV 646
A +L I ++DE ++++
Sbjct: 665 AQELGIPVIDEAEMIRLL 682
>gi|398799131|ref|ZP_10558423.1| DNA ligase, NAD-dependent [Pantoea sp. GM01]
gi|398098999|gb|EJL89271.1| DNA ligase, NAD-dependent [Pantoea sp. GM01]
Length = 672
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 262/665 (39%), Positives = 401/665 (60%), Gaps = 36/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++T L+ L H Y++ D P I D +YD+L+ +L+++E +P+L+T DS TQ VG
Sbjct: 7 QITALRTTLRHHEYLYHVMDTPEIPDAEYDRLMLQLRELESAHPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F + + FNKR+ + LK T ++ Y ELK DG+AV+L YE
Sbjct: 67 LAAFEQVRHEVPMLSLDNTFDEAGFLAFNKRVQDRLKSTDDLTYCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT N+ IH IPL L+ P +EVR EV I + F KLN+
Sbjct: 127 DGLLVRAATRGDGTTGENITANVRTIHAIPLRLHGDNIPARVEVRGEVFITESGFEKLNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +G G L G MP+SH + L +
Sbjct: 187 EARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEMPASHWQRLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +++ FY+++ +R +L ++IDGVV K++ + Q++LGF +RA
Sbjct: 247 KAWGLPVTDRIRLAHSAEEVLAFYRQVEQERPSLGFDIDGVVIKVDSQALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + + S RP +++ P+ CP+C S + +E ++ RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVESERPQETREIVFPSHCPVCGSDVERVEGEVVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V+T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVLTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+KLTT RF+YALGIR VGE TA LAN+F LE + A +
Sbjct: 486 DRMGPKSAQNVVDALEKAKLTTLPRFLYALGIREVGEATAANLANHFGELEKVMNADLDA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW--------------------- 594
L+ + +G F+++ +R +I L ++G++W
Sbjct: 546 LIEVQDVGKVVATHVRNFMDEESNRAVIRDLTEEIGVHWPPVEVVNAEEIDSPFAGKTVV 605
Query: 595 -------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
+N + K G KV +SK T+ L+ G+ G KL KA +L I ++DE
Sbjct: 606 LTGSLSQMNRDDAKERLVALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIPVIDEAE 665
Query: 642 FVKIV 646
++++
Sbjct: 666 MIRLL 670
>gi|262165212|ref|ZP_06032949.1| DNA ligase [Vibrio mimicus VM223]
gi|262024928|gb|EEY43596.1| DNA ligase [Vibrio mimicus VM223]
Length = 682
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 276/679 (40%), Positives = 404/679 (59%), Gaps = 35/679 (5%)
Query: 3 FHAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPEL 62
F + ++ S + R+ EL++ LH H + YY+ D P I D +YD+L+ EL +E PEL
Sbjct: 5 FSSSERFTMSNVEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPEL 64
Query: 63 LTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIA 122
+T DS + VG + + V H M+SLDN F D ++ F +R+T+ + + +
Sbjct: 65 ITPDSPSLRVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRIPAVQQSHFCC 124
Query: 123 ELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRC 182
E K DG+AV+L YE G L +A+TRGDG GENIT N+ I+ IPL L P LEVR
Sbjct: 125 EPKLDGLAVSLLYENGVLTRAATRGDGATGENITENVRTINSIPLRLQGSDFPVRLEVRG 184
Query: 183 EVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG 242
EV + K F LN G K+F NPRNAAAG LRQL+ +I + L F+A+ VG + G
Sbjct: 185 EVFMPKAGFEALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIIDG 244
Query: 243 MNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKIN 302
+ +SH + ++ GL IC E ++ + ++ FY+ I +R +L YEIDGVV K++
Sbjct: 245 GELATSHYQRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKVD 304
Query: 303 CLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGIT 362
+ Q++LGF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T
Sbjct: 305 DIQLQERLGFVARAPRWAIAYKFPAQEELTILNDVEFQVGRTGAITPVAKLEPVFVGGVT 364
Query: 363 ITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICN 422
++ ATLHN EI R + +GDTVV+ R+G+VIP+I S +L RP D+K P CP+C
Sbjct: 365 VSNATLHNADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAKPIVFPACCPVCQ 424
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
S+I IE +ARC+G I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T
Sbjct: 425 SEIERIEGEAVARCTGGLI-CQAQRKEALKHFVSRKAMDVDGLGDKVIEQLVDREMVSTP 483
Query: 483 VDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY 542
DL+++ L L+R+ K A N++ A+ K+K TT RF+YALGIR VGE TA LA +
Sbjct: 484 ADLFRLRAGELTILERMGPKSAQNVIDALNKAKQTTLPRFLYALGIREVGEATALNLAQH 543
Query: 543 FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------- 594
F L+ + +A+ +QL+ +P +G F Q ++ +I++L ++GI W
Sbjct: 544 FLTLDAIAQASMDQLIEVPDVGGVVASHLHAFFAQSRNQQVIAELIELGITWPAMAVASS 603
Query: 595 --------------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEK 628
L+ + K G KV +SKNT+ + G+ G KL K
Sbjct: 604 IAADSALAGKVVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLSK 663
Query: 629 AIKLNIKILDEKNFVKIVK 647
A +L I++LDE+ + +K
Sbjct: 664 AAELGIQVLDEQALIDFLK 682
>gi|152971289|ref|YP_001336398.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|386035912|ref|YP_005955825.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae KCTC 2242]
gi|424831755|ref|ZP_18256483.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae subsp. pneumoniae
Ecl8]
gi|425082594|ref|ZP_18485691.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|425092677|ref|ZP_18495762.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|428936934|ref|ZP_19010291.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae JHCK1]
gi|449044831|ref|ZP_21730185.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae hvKP1]
gi|166215815|sp|A6TC47.1|DNLJ_KLEP7 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|150956138|gb|ABR78168.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|339763040|gb|AEJ99260.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae KCTC 2242]
gi|405600846|gb|EKB74011.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|405611903|gb|EKB84669.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|414709192|emb|CCN30896.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae subsp. pneumoniae
Ecl8]
gi|426297309|gb|EKV59820.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae JHCK1]
gi|448878083|gb|EMB13028.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae hvKP1]
Length = 671
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 265/664 (39%), Positives = 407/664 (61%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P + D +YD+L+ +L+++E ++PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T ++ Y ELK DG+AV++ YE
Sbjct: 67 LTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDHLTYCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SHS L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHSARLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ +Y+K+ +R +L ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVFPTHCPVCQSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F LE + +A+ E+
Sbjct: 486 DRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALEQASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I+QL G+ W
Sbjct: 546 LQKVPDVGIVVATHTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 MRLL 669
>gi|372277612|ref|ZP_09513648.1| NAD-dependent DNA ligase LigA [Pantoea sp. SL1_M5]
Length = 675
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 267/664 (40%), Positives = 396/664 (59%), Gaps = 36/664 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+TEL+ L H Y++ D P + D +YD+L+ EL+++EE++P+L+T DS TQ VG
Sbjct: 8 ITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRQLEEEHPDLITPDSPTQRVGAAPL 67
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
+ V H M+SLDN F + + FNKR+ + LK + +I Y ELK DG AV+L YE
Sbjct: 68 TVFEQVRHEVPMLSLDNAFDEATFMAFNKRVQDRLKSSDDITYCCELKLDGAAVSLMYEN 127
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L QA+TRGDG GENIT N+ I IPL L P LEVR E+ + ++ F KLN+
Sbjct: 128 GLLVQAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRGEIFMTQRGFEKLNEE 187
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
K F NPRNAAAG LRQL+P+I + L FF +G G L G MP SH L ++
Sbjct: 188 ARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEMPHSHMGRLQQFK 247
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
GL + ++ + + FY+ I +R NL ++IDGVV K++ Q+KLGF +RAP
Sbjct: 248 AWGLPVSDRIKLVHNAEEALAFYRDIEQQRPNLGFDIDGVVIKVDSQELQEKLGFVARAP 307
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+A+KF ++E LT ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 308 RWAIAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIERL 367
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
++IGD VV+ R+G+VIP++ + +++ RP ++ P CP+C S++ +E + RC+
Sbjct: 368 GLRIGDRVVIRRAGDVIPQVVNVVMAERPEQTREVLFPAHCPVCGSEVERVEGESVTRCT 427
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++ L LD
Sbjct: 428 GGLI-CGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVNTPADLFRLTAGKLTGLD 486
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+ K A N++ A++K+K TT +RF+YALGIR VGE TA LAN+F L+ + A E L
Sbjct: 487 RMGPKSAQNVVDALEKAKSTTLARFLYALGIREVGEATAANLANHFGELQKVMDADLEAL 546
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW---------------------- 594
+ +P +G F+ + +R +I QL D+GI+W
Sbjct: 547 IAVPDVGKVVAAHVRNFMEEESNREVIRQLVEDIGIHWPQVVVVRAEEIDSPFAGKTVVL 606
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+N + K G KV +SK T+ L+ G+ G KL KA +L I+++DE
Sbjct: 607 TGSLSQMNRDDAKAQLIALGAKVSGSVSKKTDLLIAGEAAGSKLAKAAELGIEVIDEAEM 666
Query: 643 VKIV 646
++++
Sbjct: 667 IRLL 670
>gi|343519713|ref|ZP_08756691.1| DNA ligase (NAD+) [Haemophilus pittmaniae HK 85]
gi|343392431|gb|EGV04998.1| DNA ligase (NAD+) [Haemophilus pittmaniae HK 85]
Length = 667
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 274/659 (41%), Positives = 390/659 (59%), Gaps = 34/659 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L++ L R+ Y++ DNP I D +YD+L +LK +E +PEL+T DS TQ VG
Sbjct: 10 LRQALRRYEYEYHVLDNPTIPDAEYDKLFHQLKALEAAHPELITADSPTQRVGAKPLSAF 69
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKL-TKNIEYIAELKFDGIAVNLRYEYGY 139
+ H M+SLDN FSDE+ F KRI + L L + + + E K DG+AV++ Y G
Sbjct: 70 AQIRHEIPMLSLDNAFSDEEFFAFVKRIEDRLGLLPQPLTFCCEPKLDGLAVSILYVNGI 129
Query: 140 LKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRY 199
L QA+TRGDG GE+IT NI I IPL L PP LEVR EV + F +LN++
Sbjct: 130 LSQAATRGDGTTGEDITANIRTIRNIPLQLLSDNPPARLEVRGEVFMPHAGFERLNEHAL 189
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKI 259
G K F NPRNAAAG LRQL+P I + L F A+ +G G +P E L W + I
Sbjct: 190 EHGEKTFANPRNAAAGSLRQLDPNITSKRPLSFNAYSIGVAEGAELPQGQYERLQWLKTI 249
Query: 260 GLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRF 319
G+ + E + GV+ +++FY+ I KR L Y+IDG V KIN + Q++LGF S+APR+
Sbjct: 250 GIPVNAEIRLCEGVDAVLDFYQDIQSKRSELGYDIDGTVLKINDIELQQRLGFISKAPRW 309
Query: 320 ALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNI 379
A+AYKF ++E LT++ + Q+GRTG +TPVA L+PV + G+T++ ATLHN EI R ++
Sbjct: 310 AIAYKFPAQEQLTRLNDVEFQVGRTGAVTPVAKLEPVFVAGVTVSNATLHNGDEIARLDL 369
Query: 380 QIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGS 439
IGDTVVV R+G+VIP+I + RP D+K P CP+C+S I+ I+ +ARC+G
Sbjct: 370 AIGDTVVVRRAGDVIPQIIGVLHERRPADAKPIIFPTHCPVCDSLIVRIDGEAVARCTGG 429
Query: 440 WIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRV 499
I C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++ L L+R+
Sbjct: 430 LI-CAAQRKEALKHFVSRKAMDIDGVGAKLIEQLVDRELIHTPADLFKLDLTTLCCLERM 488
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
+ K A N L ++QK+K TT +RFI+ALGIR VGE TA LAN+FK LE + A + L
Sbjct: 489 AEKSAQNALASLQKAKQTTLARFIFALGIREVGEATALNLANHFKTLEALQAADLDALQE 548
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL--------NNP-NTK--------- 601
+P +G F + + ++ L G++W NP N K
Sbjct: 549 VPDVGEVVANRIFVFWREAHNVAVVEDLLKQGVHWPAVEEKIVGENPFNGKTVVLTGTLS 608
Query: 602 --------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
G KV +S T++++ G G KL KA +L + +L E+ ++ ++
Sbjct: 609 QMGRSEAKARLQELGAKVSGSVSAKTDFVIAGDAAGSKLTKAQELGVTVLSEEQWLAML 667
>gi|50122504|ref|YP_051671.1| NAD-dependent DNA ligase LigA [Pectobacterium atrosepticum
SCRI1043]
gi|81644069|sp|Q6D165.1|DNLJ_ERWCT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|49613030|emb|CAG76481.1| DNA ligase [Pectobacterium atrosepticum SCRI1043]
Length = 681
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 270/673 (40%), Positives = 405/673 (60%), Gaps = 38/673 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ ++ RV EL++ L H Y++ D P I D +YD+L+ ELK +E +PEL+T DS TQ
Sbjct: 1 MNAVALRVAELRRVLRHHEYKYHVEDAPEIPDIEYDKLMQELKALEADHPELVTSDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + V H M+SLDN F +E + F+KRI + LK ++ + ELK DG+A
Sbjct: 61 RVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDDLTFCCELKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L QA+TRGDG GENIT+NI + IPL L + P +EVR EV +
Sbjct: 121 VSLLYEEGILVQAATRGDGTTGENITSNIRTVGAIPLRLEGENIPRRVEVRGEVFMKHGG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F KLN+ G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SH
Sbjct: 181 FEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPASHW 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
E L ++ GL + + +G ++++FY+++ R +L ++IDGVV K++ L+ Q++L
Sbjct: 241 ERLMQFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSSLGFDIDGVVVKVDSLALQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+A+KF ++E LT ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN
Sbjct: 301 GFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R +QIGD V+V R+G+VIP+I + S RP + P CP+C S + +E
Sbjct: 361 ADEIERLGLQIGDRVIVRRAGDVIPQIVGIVESERPETVQPIVFPAACPVCGSDVERVEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ RC+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL++++
Sbjct: 421 EAVTRCTGGLI-CGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVKTPADLFRLSA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
+ LDR+ K A N++ A++K+K TT +RF+YALGIR VGE+TA LA +F +LE +F
Sbjct: 480 GIMTGLDRMGPKSAMNLVNALEKAKSTTLARFLYALGIRDVGESTAANLAAHFGSLETLF 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRD---VGIYW----------LNN 597
A E+ LL +P +G F+ + ++ +I +L D + IYW +++
Sbjct: 540 AADEDALLEVPDVGKIVAAHVRHFLEEEHNQTVIRELTDPAGINIYWPEVKVVNAEEIDS 599
Query: 598 P------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLN 633
P G KV +SK T+ ++ G+ G KL KA +L
Sbjct: 600 PFAGKTVVLTGSLSILSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELG 659
Query: 634 IKILDEKNFVKIV 646
I ++DE ++++
Sbjct: 660 IPVIDEAEMIRLL 672
>gi|397659256|ref|YP_006499958.1| DNA ligase [Klebsiella oxytoca E718]
gi|394347459|gb|AFN33580.1| DNA ligase [Klebsiella oxytoca E718]
Length = 674
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 264/664 (39%), Positives = 405/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ +L+++E ++PEL+T DS TQ VG
Sbjct: 7 KLTELRTTLRHHEYLYHVMDTPEIPDAEYDRLMRKLRELEAQHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ ++ H M+SLDN F +E + FNKR+ + LK T N+ Y ELK DG+AV++ YE
Sbjct: 67 LASFSHIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNTDNLTYCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE+IT+N+ I IPL L P+ LEVR EV + + F K+N+
Sbjct: 127 NGLLVQAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPQRLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SHS L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHSARLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +++ +Y+++ R L ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KSWGLPVSERVKLCHTPEEVLTYYRQVEEDRPKLGFDIDGVVIKVDSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C+S + +E ++ RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREIVFPTHCPVCHSDVERVEGEVVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFQLTPGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++KSK TTF+RF+YALGIR VGE TA LA +F +E + +A+ +
Sbjct: 486 DRMGPKSAQNVVDALEKSKETTFARFLYALGIREVGEATAAGLAAHFGTIEALEQASIDD 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I+QLR G+ W
Sbjct: 546 LQKVPDVGIVVATHVRNFFAEESNREVIAQLRKEGVRWPAPVVVNAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEDEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|423115480|ref|ZP_17103171.1| DNA ligase [Klebsiella oxytoca 10-5245]
gi|376381566|gb|EHS94303.1| DNA ligase [Klebsiella oxytoca 10-5245]
Length = 674
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 405/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E ++PEL+T DS TQ VG
Sbjct: 7 KLTELRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELEAQHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + H M+SLDN F +E + FNKR+ + LK + ++ Y ELK DG+AV++ YE
Sbjct: 67 LASFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNSDDLTYCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE+IT+N+ I IPL L P+ LEVR EV + + F K+N+
Sbjct: 127 NGLLVQAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPQRLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SHS L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHSARLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +++ +Y+K+ R NL ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KFWGLPVSERVKLCHTPEEVLTYYRKVEEDRPNLGFDIDGVVIKVDSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C+S + +E ++ RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETQEIVFPTHCPVCHSDVERVEGEVVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFQLTPGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A NI+ A++KSK TTF+RF+YALGIR VGE TA LA +F +E + +A+ +
Sbjct: 486 DRMGPKSAQNIVDALEKSKETTFARFLYALGIREVGEATAAGLAAHFGTIEALEQASIDD 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I+QLR G+ W
Sbjct: 546 LQKVPDVGIVVATHVRNFFAEESNREVIAQLRKEGVRWPAPVVVNAEEIDSPFAGKTIVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQLSRDDAKAQLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEDEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|375105374|ref|ZP_09751635.1| DNA ligase, NAD-dependent [Burkholderiales bacterium JOSHI_001]
gi|374666105|gb|EHR70890.1| DNA ligase, NAD-dependent [Burkholderiales bacterium JOSHI_001]
Length = 684
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 265/675 (39%), Positives = 404/675 (59%), Gaps = 42/675 (6%)
Query: 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG 73
L R L+++L+ H YY+ D P + D +YD+L EL+ +E ++P L + DS TQ VG
Sbjct: 7 LPERAARLREQLNHHAHCYYVLDAPEVPDAEYDRLFQELQALEAEHPGLRSADSPTQRVG 66
Query: 74 LVGGENSKYVHHTFKMMSLDNGFSDE--DVIIFNKRITNELKLTKN---IEYIAELKFDG 128
+ V H M+S+ E F+ RI EL+L + + Y AELKFDG
Sbjct: 67 GAVLDGFAAVRHALPMLSIRTETDTEASGAEDFDARIRRELELDEAAPAVAYSAELKFDG 126
Query: 129 IAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYK 188
+A+NLRYE+G L QA+TRGDG GE++T NI I ++PL L P +LEVR EV + +
Sbjct: 127 LAINLRYEHGLLVQAATRGDGESGEDVTQNIRTIGQVPLRLAGCDAP-VLEVRGEVYMRR 185
Query: 189 KDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSS 248
DF +N+ + G K F NPRNAAAG +RQL+P I + L FFA+G+G+ +G P +
Sbjct: 186 DDFEAMNERQRERGDKTFVNPRNAAAGAVRQLDPAIAAQRPLSFFAYGLGDTQGWPQPPT 245
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
HS L+ +GL +C + +V +G +L+ F++ + KR LP++IDGVVYK++ ++ Q+
Sbjct: 246 HSATLDALAAMGLPVCADRTVAAGAAELVAFHRAMGAKRDALPFDIDGVVYKVDSVALQQ 305
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
+LGF SR PR+A+A+K+ ++E +T + I IQ+GRTG +TPVA L PV + G T++ ATL
Sbjct: 306 RLGFVSREPRWAVAHKYPAQEQVTVLNGIEIQVGRTGKLTPVAKLAPVFVGGTTVSNATL 365
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYI 428
HN E+ RK +++GD V+V R+G+VIP++ + RP F++P CP+C S
Sbjct: 366 HNLFEMRRKGVRVGDRVIVRRAGDVIPEVVGRLPGERPQYVPNFRMPRTCPVCGSGAARE 425
Query: 429 ESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488
+ + RC+G + C AQRK L HF+ R+AM+I GLG K++++LV+A ++ T +LY +
Sbjct: 426 KGGVDYRCTGG-LYCPAQRKQALLHFAQRRAMDIEGLGDKLVDQLVDAGLIRTLPELYTL 484
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
L L+R+ K A N++ + KS+ TT +RF++ALGIR VGETTAK+LA +F ++
Sbjct: 485 GVAKLAALERMGEKSAQNLVDGLAKSRHTTLARFLFALGIRQVGETTAKDLARHFGAMDR 544
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------- 594
+ A+ +QLL + +G ++ F +QP +R ++ QLR GI W
Sbjct: 545 LMDASLDQLLQVKDVGPIVAQSIRTFFDQPHNREVVEQLRAAGIRWDEHEGAASLDTSAL 604
Query: 595 ---------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLN 633
L+ K GGKV +SK T+Y+V G++ G KL+KA +L
Sbjct: 605 PLAGKTLVLTGTLPSLSRDEAKDLIEAAGGKVSGSVSKKTHYVVAGEEAGSKLDKARELG 664
Query: 634 IKILDEKNFVKIVKG 648
+ +LDE ++ G
Sbjct: 665 LAVLDEAGLRALLAG 679
>gi|238895883|ref|YP_002920619.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|402779617|ref|YP_006635163.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae 1084]
gi|238548201|dbj|BAH64552.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
gi|402540554|gb|AFQ64703.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae 1084]
Length = 671
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 265/664 (39%), Positives = 407/664 (61%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P + D +YD+L+ +L+++E ++PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T ++ Y ELK DG+AV++ YE
Sbjct: 67 LTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDHLTYCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SHS L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHSARLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ +Y+K+ +R +L ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVFPTHCPVCQSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F LE + +AT E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALEQATIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I+QL G+ W
Sbjct: 546 LQKVPDVGIVVATHTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQLSRDDAKERLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 MRLL 669
>gi|378775634|ref|YP_005177877.1| DNA ligase [Pasteurella multocida 36950]
gi|421264484|ref|ZP_15715464.1| NAD-dependent DNA ligase LigA [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|425066593|ref|ZP_18469713.1| DNA ligase [Pasteurella multocida subsp. gallicida P1059]
gi|356598182|gb|AET16908.1| DNA ligase [Pasteurella multocida 36950]
gi|401688174|gb|EJS83821.1| NAD-dependent DNA ligase LigA [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|404381381|gb|EJZ77858.1| DNA ligase [Pasteurella multocida subsp. gallicida P1059]
Length = 673
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 276/671 (41%), Positives = 396/671 (59%), Gaps = 34/671 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+ + +L++ L H Y++ DNP I D +YD+L LK +E++YP+ + DS TQ
Sbjct: 3 DSIKLEIEQLRQTLRYHEYQYHVLDNPQIPDAEYDRLFHRLKTLEQQYPQWFSSDSPTQR 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-KNIEYIAELKFDGIA 130
VG V H M+SLDN FSDE++ F KRI + L + K +E+ E K DG+A
Sbjct: 63 VGAKPLSAFAQVQHEMPMLSLDNAFSDEELHAFVKRIQDRLVFSPKLLEFCCEPKLDGLA 122
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V++ Y G L QA+TRGDG+ GE+IT NI + IPL L ++ PP LEVR EV + +
Sbjct: 123 VSILYVDGKLTQAATRGDGSTGEDITLNIRTVRNIPLQLLMENPPTRLEVRGEVFMSQAG 182
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN+ G K F NPRNAAAG LRQL+P+I + L A+ +G G+++P +H
Sbjct: 183 FEALNEKALARGEKTFANPRNAAAGSLRQLDPRITSQRPLLLNAYSIGVAEGIDLPDTHF 242
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
E L W + IG+ + E + G ++ FY+ I KR L Y+IDG V K+N ++ Q++L
Sbjct: 243 ERLQWLKSIGIPVNNEIQLCEGTENVLNFYRAIMQKRSTLGYDIDGTVIKVNDIALQEEL 302
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF S+APR+A+AYKF ++E LT + A+ Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 303 GFISKAPRWAIAYKFPAQEELTVLNAVEFQVGRTGAITPVAKLQPVFVAGVTVSNATLHN 362
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R ++ IGDTV++ R+G+VIP+I + RP +++ P CP+C S I+ IE
Sbjct: 363 GDEIARLDVAIGDTVIIRRAGDVIPQIIGVLHEKRPANAEKIVFPTECPVCGSVIVRIEG 422
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ + T DL+K++
Sbjct: 423 EAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGAKLIEQLVDREQIHTPADLFKLDL 481
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L RL+R+ K A N L ++QK+K TT +RFI+ALGIR VGE TA LAN+FK LE +
Sbjct: 482 NTLARLERMGLKSAQNALDSLQKAKKTTLARFIFALGIREVGEATALNLANHFKTLEALK 541
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL--------NNP---- 598
+AT EQL + +G F +P + ++ L GI+W +NP
Sbjct: 542 EATLEQLQEVQDVGEVVANRIFVFWREPHNVAVVDDLIAQGIHWETVEVKDVGDNPFKEK 601
Query: 599 --------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
G KV +S T+ +V G G KL KA +L +K++D
Sbjct: 602 TVVLTGTLTQMGRTEAKALLQQLGAKVSGSVSAKTDLVVAGDSAGSKLTKANELGVKVID 661
Query: 639 EKNFVKIVKGF 649
E F+ K +
Sbjct: 662 ENTFLAWSKPY 672
>gi|403059846|ref|YP_006648063.1| NAD-dependent DNA ligase [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402807172|gb|AFR04810.1| DNA ligase, NAD-dependent [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 684
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 270/678 (39%), Positives = 405/678 (59%), Gaps = 38/678 (5%)
Query: 6 KKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTK 65
K+ + + RV EL++ L H Y++ D P I D +YD+L+ ELK +E +PEL+T
Sbjct: 6 KEPAEVNTAALRVAELRRVLRHHEYKYHVEDAPEIPDIEYDKLMQELKALEADHPELVTS 65
Query: 66 DSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELK 125
DS TQ VG + V H M+SLDN F +E + F+KRI + LK ++ + ELK
Sbjct: 66 DSPTQRVGAAPLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDDLTFCCELK 125
Query: 126 FDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVL 185
DG+AV+L YE G L QA+TRGDG+ GENIT+NI + IPL L P +EVR EV
Sbjct: 126 LDGLAVSLLYEDGVLVQAATRGDGSTGENITSNIRTVAAIPLRLEGDNIPRRVEVRGEVF 185
Query: 186 IYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM 245
+ F KLN+ G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +
Sbjct: 186 MKHSGFEKLNEEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGEL 245
Query: 246 PSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLS 305
P+SH E L ++ GL + + +G ++++FY+++ R +L ++IDGVV K++ L
Sbjct: 246 PASHWERLMQFKAWGLPVSDRIKLCTGPVEVLDFYRQVEQTRSSLGFDIDGVVVKVDSLE 305
Query: 306 TQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITR 365
Q++LGF +RAPR+A+A+KF ++E LT ++ + Q+GRTG ITPVA L+PV + G+ ++
Sbjct: 306 LQERLGFVARAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSN 365
Query: 366 ATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKI 425
ATLHN EI R +QIGD V+V R+G+VIP+I + S RP + P CP+C S +
Sbjct: 366 ATLHNADEIERLGLQIGDRVIVRRAGDVIPQIVGIVESERPETVRPIVFPAACPVCGSDV 425
Query: 426 IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDL 485
+E + RC+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL
Sbjct: 426 ERVEGEAVTRCTGGLI-CGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVKTPADL 484
Query: 486 YKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN 545
++++ + L+R+ K A N++ A++K+K TT +RF+YALGIR VGE+TA LA +F +
Sbjct: 485 FRLSAGIMTGLERMGPKSATNLVNALEKAKSTTLARFLYALGIRDVGESTAANLAAHFGS 544
Query: 546 LECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRD---VGIYW-------- 594
LE +F A EE LL +P +G F+ + ++ +I +L D + I+W
Sbjct: 545 LEALFAADEEALLEVPDVGKVVAAHVRHFLEEEHNQTVIRELTDPAGINIHWSEVQVVNA 604
Query: 595 --LNNP------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEK 628
+++P G KV +SK T+ ++ G+ G KL K
Sbjct: 605 EEIDSPFAGKTVVLTGSLSVLSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAK 664
Query: 629 AIKLNIKILDEKNFVKIV 646
A +L I ++DE ++++
Sbjct: 665 AQELGIPVIDEAEMIRLL 682
>gi|423109596|ref|ZP_17097291.1| DNA ligase [Klebsiella oxytoca 10-5243]
gi|376382330|gb|EHS95064.1| DNA ligase [Klebsiella oxytoca 10-5243]
Length = 674
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 404/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E ++PEL+T DS TQ VG
Sbjct: 7 KLTELRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELEAQHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + H M+SLDN F +E + FNKR+ + LK + ++ Y ELK DG+AV++ YE
Sbjct: 67 LASFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNSDDLTYCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE+IT+N+ I IPL L P+ LEVR EV + + F K+N+
Sbjct: 127 NGLLVQAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPQRLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SHS L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHSARLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +++ +Y+K+ R NL ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KFWGLPVSERVKLCHTPEEVLTYYRKVEEDRPNLGFDIDGVVIKVDSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C+S + +E ++ RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREIVFPTHCPVCHSDVERVEGEVVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFQLTPGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A NI+ A+ KSK TTF+RF+YALGIR VGE TA LA +F +E + +A+ +
Sbjct: 486 DRMGPKSAQNIVDALDKSKETTFARFLYALGIREVGEATAAGLAAHFGTIEALEQASIDD 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I+QLR G+ W
Sbjct: 546 LQKVPDVGIVVATHVRNFFAEESNREVIAQLRKEGVRWPAPVVVNAEEIDSPFAGKTIVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQLSRDDAKAQLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEDEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|423125092|ref|ZP_17112771.1| DNA ligase [Klebsiella oxytoca 10-5250]
gi|376399343|gb|EHT11958.1| DNA ligase [Klebsiella oxytoca 10-5250]
Length = 674
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 265/664 (39%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E ++PEL+T DS TQ VG
Sbjct: 7 KLTELRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELEAQHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T ++ Y ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNTDDLTYCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE+IT+N+ I IPL L+ P+ LEVR EV + + F K+N+
Sbjct: 127 NGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPQRLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SHS L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPRSHSARLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +++ +Y+K+ R NL ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 KFWGLPVSERVKLCHSPEEVLTYYRKVEEDRPNLGFDIDGVVIKVDSLDLQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C+S + +E ++ RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREIVFPTHCPVCHSDVERVEGEVVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVHTPADLFQLTPGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++KSK TTF+RF+YALGIR VGE TA LA +F +E + +A+ +
Sbjct: 486 DRMGPKSAQNVVDALEKSKETTFARFLYALGIREVGEATAAGLAAHFGTIEALEQASIDD 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNPNTK----- 601
L +P +G F + +R +I+QLR G+ W +++P
Sbjct: 546 LQKVPDVGIVVATHVRNFFAEESNREVIAQLRKEGVRWPAPVVVNAEEIDSPFAGKTVVL 605
Query: 602 -------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQLSRDEAKAQLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDENEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|432576677|ref|ZP_19813135.1| DNA ligase [Escherichia coli KTE56]
gi|431114478|gb|ELE18018.1| DNA ligase [Escherichia coli KTE56]
Length = 671
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 269/664 (40%), Positives = 404/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ V +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESVEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|417854565|ref|ZP_12499855.1| NAD-dependent DNA ligase LigA [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|338217767|gb|EGP03607.1| NAD-dependent DNA ligase LigA [Pasteurella multocida subsp.
multocida str. Anand1_goat]
Length = 673
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 276/671 (41%), Positives = 396/671 (59%), Gaps = 34/671 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+ + +L++ L H Y++ DNP I D +YD+L LK +E++YP+ + DS TQ
Sbjct: 3 DSIKLEIEQLRQTLRYHEYQYHVLDNPQIPDAEYDRLFHRLKMLEQQYPQWFSSDSPTQR 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-KNIEYIAELKFDGIA 130
VG V H M+SLDN FSDE++ F KRI + L + K +E+ E K DG+A
Sbjct: 63 VGAKPLSAFAQVQHEMPMLSLDNAFSDEELHAFVKRIQDRLVFSPKLLEFCCEPKLDGLA 122
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V++ Y G L QA+TRGDG+ GE+IT NI + IPL L ++ PP LEVR EV + +
Sbjct: 123 VSILYVDGKLTQAATRGDGSAGEDITLNIRTVRNIPLQLLMENPPTRLEVRGEVFMSQAG 182
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN+ G K F NPRNAAAG LRQL+P+I + L A+ +G G+++P +H
Sbjct: 183 FESLNEKALARGEKTFANPRNAAAGSLRQLDPRITSQRPLLLNAYSIGVAEGIDLPDTHF 242
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
E L W + IG+ + E + G ++ FY+ I KR L Y+IDG V K+N ++ Q++L
Sbjct: 243 ERLQWLRSIGIPVNNEIQLCEGTENVLNFYRAIMQKRSTLGYDIDGTVIKVNDIALQEEL 302
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF S+APR+A+AYKF ++E LT + A+ Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 303 GFISKAPRWAIAYKFPAQEELTVLNAVEFQVGRTGAITPVAKLQPVFVAGVTVSNATLHN 362
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R ++ IGDTV++ R+G+VIP+I + RP +++ P CP+C S I+ IE
Sbjct: 363 GDEIARLDVAIGDTVIIRRAGDVIPQIIGVLHEKRPANAEKIVFPTECPVCGSVIVRIEG 422
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ + T DL+K++
Sbjct: 423 EAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGAKLIEQLVDREQIHTPADLFKLDL 481
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L RL+R+ K A N L ++QK+K TT +RFI+ALGIR VGE TA LAN+FK LE +
Sbjct: 482 NTLARLERMGLKSAQNALDSLQKAKKTTLARFIFALGIREVGEATALNLANHFKTLEALK 541
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL--------NNP---- 598
+AT EQL + +G F +P + ++ L GI+W +NP
Sbjct: 542 EATLEQLQEVQDVGEVVANRIFVFWREPHNVAVVDDLIAQGIHWETVEVKDVGDNPFKEK 601
Query: 599 --------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
G KV +S T+ +V G G KL KA +L +K++D
Sbjct: 602 TVVLTGTLTQMGRTEAKALLQQLGAKVSGSVSAKTDLVVAGDSAGSKLTKANELGVKVID 661
Query: 639 EKNFVKIVKGF 649
E F+ K +
Sbjct: 662 ENTFLAWSKPY 672
>gi|425306141|ref|ZP_18695843.1| DNA ligase, NAD-dependent [Escherichia coli N1]
gi|408227773|gb|EKI51342.1| DNA ligase, NAD-dependent [Escherichia coli N1]
Length = 671
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 269/664 (40%), Positives = 404/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + I + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKITWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ +R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCKSAEEVLAFYHKVEEERPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|15640987|ref|NP_230618.1| NAD-dependent DNA ligase LigA [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|153822692|ref|ZP_01975359.1| DNA ligase [Vibrio cholerae B33]
gi|229510900|ref|ZP_04400379.1| DNA ligase [Vibrio cholerae B33]
gi|229518021|ref|ZP_04407465.1| DNA ligase [Vibrio cholerae RC9]
gi|229608449|ref|YP_002879097.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MJ-1236]
gi|254291846|ref|ZP_04962629.1| DNA ligase [Vibrio cholerae AM-19226]
gi|254848101|ref|ZP_05237451.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MO10]
gi|255744753|ref|ZP_05418704.1| DNA ligase [Vibrio cholera CIRS 101]
gi|262151242|ref|ZP_06028378.1| DNA ligase [Vibrio cholerae INDRE 91/1]
gi|360034875|ref|YP_004936638.1| DNA ligase, NAD-dependent [Vibrio cholerae O1 str. 2010EL-1786]
gi|379740801|ref|YP_005332770.1| NAD-dependent DNA ligase LigA [Vibrio cholerae IEC224]
gi|417813003|ref|ZP_12459660.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-49A2]
gi|417815870|ref|ZP_12462502.1| DNA ligase, NAD-dependent [Vibrio cholerae HCUF01]
gi|418332015|ref|ZP_12942951.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-06A1]
gi|418336762|ref|ZP_12945660.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-23A1]
gi|418343272|ref|ZP_12950061.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-28A1]
gi|418348430|ref|ZP_12953164.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-43A1]
gi|418354950|ref|ZP_12957671.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-61A1]
gi|419825416|ref|ZP_14348921.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1033(6)]
gi|421316265|ref|ZP_15766836.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1032(5)]
gi|421320598|ref|ZP_15771155.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1038(11)]
gi|421324592|ref|ZP_15775118.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1041(14)]
gi|421328253|ref|ZP_15778767.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1042(15)]
gi|421331272|ref|ZP_15781752.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1046(19)]
gi|421334846|ref|ZP_15785313.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1048(21)]
gi|421338741|ref|ZP_15789176.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-20A2]
gi|421346918|ref|ZP_15797300.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-46A1]
gi|422891086|ref|ZP_16933473.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-40A1]
gi|422901963|ref|ZP_16937300.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-48A1]
gi|422906179|ref|ZP_16941013.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-70A1]
gi|422912769|ref|ZP_16947288.1| DNA ligase, NAD-dependent [Vibrio cholerae HFU-02]
gi|422925250|ref|ZP_16958275.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-38A1]
gi|423144569|ref|ZP_17132178.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-19A1]
gi|423149248|ref|ZP_17136576.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-21A1]
gi|423153065|ref|ZP_17140259.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-22A1]
gi|423155876|ref|ZP_17142980.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-32A1]
gi|423159702|ref|ZP_17146670.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-33A2]
gi|423164414|ref|ZP_17151179.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-48B2]
gi|423730538|ref|ZP_17703852.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-17A1]
gi|423751921|ref|ZP_17711871.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-50A2]
gi|423892243|ref|ZP_17725926.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-62A1]
gi|423927021|ref|ZP_17730543.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-77A1]
gi|424001564|ref|ZP_17744650.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-17A2]
gi|424005724|ref|ZP_17748704.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-37A1]
gi|424023742|ref|ZP_17763402.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-62B1]
gi|424026535|ref|ZP_17766148.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-69A1]
gi|424585862|ref|ZP_18025452.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1030(3)]
gi|424594561|ref|ZP_18033894.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1040(13)]
gi|424598427|ref|ZP_18037621.1| DNA ligase, NAD-dependent [Vibrio Cholerae CP1044(17)]
gi|424601172|ref|ZP_18040325.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1047(20)]
gi|424606156|ref|ZP_18045116.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1050(23)]
gi|424609991|ref|ZP_18048845.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-39A1]
gi|424612794|ref|ZP_18051597.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-41A1]
gi|424616612|ref|ZP_18055299.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-42A1]
gi|424621560|ref|ZP_18060083.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-47A1]
gi|424644534|ref|ZP_18082282.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-56A2]
gi|424652214|ref|ZP_18089690.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-57A2]
gi|424656117|ref|ZP_18093415.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-81A2]
gi|440709246|ref|ZP_20889903.1| DNA ligase [Vibrio cholerae 4260B]
gi|443503071|ref|ZP_21070053.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-64A1]
gi|443506979|ref|ZP_21073763.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-65A1]
gi|443511096|ref|ZP_21077753.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-67A1]
gi|443514654|ref|ZP_21081185.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-68A1]
gi|443518459|ref|ZP_21084869.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-71A1]
gi|443523346|ref|ZP_21089575.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-72A2]
gi|443530957|ref|ZP_21096972.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-7A1]
gi|443534730|ref|ZP_21100628.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-80A1]
gi|443538302|ref|ZP_21104157.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-81A1]
gi|449056524|ref|ZP_21735192.1| DNA ligase [Vibrio cholerae O1 str. Inaba G4222]
gi|81545212|sp|Q9KTD1.1|DNLJ_VIBCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|9655431|gb|AAF94133.1| DNA ligase [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|126519773|gb|EAZ76996.1| DNA ligase [Vibrio cholerae B33]
gi|150422206|gb|EDN14170.1| DNA ligase [Vibrio cholerae AM-19226]
gi|229344736|gb|EEO09710.1| DNA ligase [Vibrio cholerae RC9]
gi|229350865|gb|EEO15806.1| DNA ligase [Vibrio cholerae B33]
gi|229371104|gb|ACQ61527.1| DNA ligase [Vibrio cholerae MJ-1236]
gi|254843806|gb|EET22220.1| NAD-dependent DNA ligase LigA [Vibrio cholerae MO10]
gi|255737784|gb|EET93178.1| DNA ligase [Vibrio cholera CIRS 101]
gi|262030933|gb|EEY49561.1| DNA ligase [Vibrio cholerae INDRE 91/1]
gi|340041596|gb|EGR02562.1| DNA ligase, NAD-dependent [Vibrio cholerae HCUF01]
gi|340042307|gb|EGR03272.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-49A2]
gi|341624127|gb|EGS49637.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-70A1]
gi|341624619|gb|EGS50106.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-48A1]
gi|341625404|gb|EGS50859.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-40A1]
gi|341639953|gb|EGS64558.1| DNA ligase, NAD-dependent [Vibrio cholerae HFU-02]
gi|341647563|gb|EGS71640.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-38A1]
gi|356419427|gb|EHH72974.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-06A1]
gi|356420165|gb|EHH73693.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-21A1]
gi|356425427|gb|EHH78797.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-19A1]
gi|356431865|gb|EHH85064.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-22A1]
gi|356432340|gb|EHH85537.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-23A1]
gi|356437119|gb|EHH90227.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-28A1]
gi|356442176|gb|EHH95038.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-32A1]
gi|356447169|gb|EHH99959.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-43A1]
gi|356449300|gb|EHI02054.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-33A2]
gi|356453352|gb|EHI06015.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-61A1]
gi|356455886|gb|EHI08518.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-48B2]
gi|356646029|gb|AET26084.1| DNA ligase, NAD-dependent [Vibrio cholerae O1 str. 2010EL-1786]
gi|378794311|gb|AFC57782.1| NAD-dependent DNA ligase LigA [Vibrio cholerae IEC224]
gi|395920262|gb|EJH31084.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1041(14)]
gi|395921222|gb|EJH32042.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1032(5)]
gi|395923580|gb|EJH34391.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1038(11)]
gi|395929759|gb|EJH40508.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1042(15)]
gi|395932536|gb|EJH43279.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1046(19)]
gi|395936707|gb|EJH47430.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1048(21)]
gi|395943689|gb|EJH54363.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-20A2]
gi|395945978|gb|EJH56642.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-46A1]
gi|395961217|gb|EJH71557.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-56A2]
gi|395962667|gb|EJH72960.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-57A2]
gi|395965553|gb|EJH75720.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-42A1]
gi|395973267|gb|EJH82833.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-47A1]
gi|395976658|gb|EJH86100.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1030(3)]
gi|395978114|gb|EJH87504.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1047(20)]
gi|408008830|gb|EKG46785.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-39A1]
gi|408015415|gb|EKG53000.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-41A1]
gi|408035986|gb|EKG72437.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1040(13)]
gi|408044191|gb|EKG80136.1| DNA ligase, NAD-dependent [Vibrio Cholerae CP1044(17)]
gi|408045493|gb|EKG81314.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1050(23)]
gi|408056143|gb|EKG91038.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-81A2]
gi|408610953|gb|EKK84318.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1033(6)]
gi|408626240|gb|EKK99116.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-17A1]
gi|408639040|gb|EKL10888.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-50A2]
gi|408656932|gb|EKL28023.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-77A1]
gi|408658286|gb|EKL29356.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-62A1]
gi|408847123|gb|EKL87194.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-37A1]
gi|408848700|gb|EKL88745.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-17A2]
gi|408871957|gb|EKM11184.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-62B1]
gi|408880316|gb|EKM19241.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-69A1]
gi|439974835|gb|ELP50971.1| DNA ligase [Vibrio cholerae 4260B]
gi|443432382|gb|ELS74910.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-64A1]
gi|443436012|gb|ELS82135.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-65A1]
gi|443439800|gb|ELS89496.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-67A1]
gi|443443898|gb|ELS97180.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-68A1]
gi|443447508|gb|ELT04150.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-71A1]
gi|443450446|gb|ELT10721.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-72A2]
gi|443458040|gb|ELT25436.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-7A1]
gi|443462128|gb|ELT33181.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-80A1]
gi|443465891|gb|ELT40550.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-81A1]
gi|448264347|gb|EMB01586.1| DNA ligase [Vibrio cholerae O1 str. Inaba G4222]
Length = 669
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 274/670 (40%), Positives = 402/670 (60%), Gaps = 34/670 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S ++ R+TEL+K LH H + YY+ D P I D +YD+L+ EL ++E +PEL++ DS +
Sbjct: 1 MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + V H M+SLDN F D ++ F +R+T+ + ++ + E K DG+A
Sbjct: 61 RVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL IC E +++ + ++ FY+ I +R +L YEIDGVV K++ + Q++L
Sbjct: 241 QRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTVV+ R+G+VIP+I S +L RP ++K P CP+C S + +E
Sbjct: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARCSG I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 421 EAVARCSGGLI-CQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ A+ K+K TT +F+YALGIR VGE TA LA +F +LE +
Sbjct: 480 GELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQ 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+ EQ + +P +G F Q ++ +I++L + GI W
Sbjct: 540 QASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAG 599
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L+ + K G KV +SKNT+ + G+ G KL KA +L I++
Sbjct: 600 KIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVF 659
Query: 638 DEKNFVKIVK 647
DE+ ++ +K
Sbjct: 660 DEQALIEFLK 669
>gi|261211985|ref|ZP_05926271.1| DNA ligase [Vibrio sp. RC341]
gi|260838593|gb|EEX65244.1| DNA ligase [Vibrio sp. RC341]
Length = 670
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 274/671 (40%), Positives = 402/671 (59%), Gaps = 35/671 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S + R+TEL++ LH H I YY+ D P I D +YD+L+ EL IE ++PE +T DS +
Sbjct: 1 MSNVEQRLTELRQTLHEHGIRYYVEDAPTIPDAEYDRLMRELLDIEAQHPEWITPDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + V H M+SLDN F D ++ F +R+T+ + + + E K DG+A
Sbjct: 61 RVGGRPLDGFDSVIHEIPMLSLDNAFDDAELESFYRRMTDRIPAVQQSHFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPRRLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ +I + L F+A+ VG + G + SSH
Sbjct: 181 FDALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIIEGGMLASSHY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL IC E +++ ++++ +FY+ I +R L YEIDGVV K++ ++ Q++L
Sbjct: 241 QRFLQLKSWGLPICPETKLVASLSEVKDFYQDILQRRGALAYEIDGVVIKVDDITLQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTVV+ R+G+VIP+I S +L RP D+K P CP+C S I IE
Sbjct: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPVDAKTILFPTHCPVCQSDIERIEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+++
Sbjct: 421 EAVARCTGGLV-CQAQRKEALKHFVSRKALDVEGLGDKVIEQLVDREMVATPADLFRLRA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ A+ K+K TT +F+YALGIR VGE TA LA +F LE +
Sbjct: 480 GELTILERMGPKSAQNVIDALHKAKQTTLPKFLYALGIREVGEATALNLAQHFLTLEAIA 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+AT EQL+ + +G+ F Q ++ +I++L ++G+ W
Sbjct: 540 QATMEQLIEVSDVGNVVAGHLHAFFAQSRNQKVIAELIELGVTWPAMAAISSTEADSVLA 599
Query: 595 ------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
L+ + K G KV +SKNT+ + G+ G KL KA +L + +
Sbjct: 600 GKVVVLTGSFNQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGVAV 659
Query: 637 LDEKNFVKIVK 647
+DE+ ++++K
Sbjct: 660 MDEQALIELLK 670
>gi|239815926|ref|YP_002944836.1| DNA ligase, NAD-dependent [Variovorax paradoxus S110]
gi|239802503|gb|ACS19570.1| DNA ligase, NAD-dependent [Variovorax paradoxus S110]
Length = 694
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 272/683 (39%), Positives = 416/683 (60%), Gaps = 61/683 (8%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L ++LH+H YY+ D P + D +YD+L L+ +E +YPEL T DS TQ VG E
Sbjct: 14 LSEQLHKHAHLYYVLDAPELPDAEYDRLFQRLQALEAEYPELRTPDSPTQRVGGKVLEGF 73
Query: 81 KYVHHTFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAVNLRY 135
V H M+S+ + S F+ R+ EL L ++ +EY+ ELKFDG+A+NLRY
Sbjct: 74 VKVRHKVPMLSIRTETDISPGGASAFDARVRKELGLAEDGPQVEYVCELKFDGLAMNLRY 133
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
E G L QA+TRGDG +GE +T NI + +IPL LN K PP ++EVR E+ + + DF LN
Sbjct: 134 ENGVLVQAATRGDGEVGEEVTQNIRTVREIPLRLNGKAPP-VVEVRGEIYMKRADFEALN 192
Query: 196 -KYRYHLGL-----KKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELR-----GMN 244
+ R + K F NPRNAAAG +RQL+P I + L FFA+G+GE+ G
Sbjct: 193 ERQREKIAAGQKNEKVFVNPRNAAAGAVRQLDPAIAAARPLSFFAYGLGEVTPASEGGPE 252
Query: 245 MPSSHSELLNWYQKI---GLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKI 301
P+ +W Q+ G + + + +G +LI F++ I +R LPY+IDGVVYK+
Sbjct: 253 FPTQ----FDWLQQFHAWGFPVATQTARATGAIELIAFHENIGRQRDALPYDIDGVVYKV 308
Query: 302 NCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGI 361
+ + Q++LGF SR PR+A+A+K+ ++E +T++ I +Q+GRTG +TPVA L PV + G+
Sbjct: 309 DSIELQRRLGFVSREPRWAVAHKYPAQEQITEVLGIEVQVGRTGKLTPVAKLAPVFVGGV 368
Query: 362 TITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILS--LRPNDSK--IFKIPNI 417
T+T ATLHNE E RK++++GD V+V R+G+VIP++ + RP + +F +P+
Sbjct: 369 TVTNATLHNEDEARRKDVRVGDKVIVRRAGDVIPEVVGVVPESLARPEGERGLLFTMPHQ 428
Query: 418 CPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNAN 477
CP+C S+ + E + RC+G C AQRK + HF++R+A++I GLG K++E+LV+AN
Sbjct: 429 CPVCGSEALREEGEVDYRCTGGLF-CAAQRKEAILHFAARRAVDIDGLGDKLVEQLVDAN 487
Query: 478 IVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAK 537
++ T DLYK+ F L LDR+++K A N++ A++ SK TT RF++ LGIRHVGE+TAK
Sbjct: 488 LIRTLPDLYKLGFATLAGLDRMADKSAKNLVDALEASKKTTLPRFLFGLGIRHVGESTAK 547
Query: 538 ELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--- 594
+L+ +F L+ + A+EEQLL + +G ++ F +QP +R ++ QLR G+ W
Sbjct: 548 DLSKHFGKLDAIMDASEEQLLEVNDVGPVVAQSLRTFFDQPHNREVVEQLRACGLTWEEG 607
Query: 595 -----------------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKK 625
L+ K G KV +SK T+YLV G++ G K
Sbjct: 608 EPAARAPKPLAGLTFVITGTLPTLSRDEAKDKLEAAGAKVAGSVSKKTSYLVAGEEAGSK 667
Query: 626 LEKAIKLNIKILDEKNFVKIVKG 648
L+KA ++ ++++DE ++++ G
Sbjct: 668 LDKAREIGVEVIDEARMLELLAG 690
>gi|218700877|ref|YP_002408506.1| NAD-dependent DNA ligase LigA [Escherichia coli IAI39]
gi|254781321|sp|B7NPU7.1|DNLJ_ECO7I RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|218370863|emb|CAR18680.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI39]
Length = 671
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 269/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV KIN L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKINSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|425064436|ref|ZP_18467561.1| DNA ligase [Pasteurella multocida subsp. gallicida X73]
gi|404381186|gb|EJZ77669.1| DNA ligase [Pasteurella multocida subsp. gallicida X73]
Length = 673
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 276/671 (41%), Positives = 396/671 (59%), Gaps = 34/671 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+ + +L++ L H Y++ DNP I D +YD+L LK +E++YP+ + DS TQ
Sbjct: 3 DSIKLEIEQLRQTLRYHEYQYHVLDNPQIPDAEYDRLFHRLKTLEQQYPQWFSSDSPTQR 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-KNIEYIAELKFDGIA 130
VG V H M+SLDN FSDE++ F KRI + L + K +E+ E K DG+A
Sbjct: 63 VGAKPLSAFAQVQHEMPMLSLDNAFSDEELHAFVKRIQDRLVFSPKLLEFCCEPKLDGLA 122
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V++ Y G L QA+TRGDG+ GE+IT NI + IPL L ++ PP LEVR EV + +
Sbjct: 123 VSILYVDGKLTQAATRGDGSTGEDITLNIRTVRNIPLQLLMENPPTRLEVRGEVFMSQAG 182
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN+ G K F NPRNAAAG LRQL+P+I + L A+ +G G+++P +H
Sbjct: 183 FEALNEKALARGEKTFANPRNAAAGSLRQLDPRITSQRPLLLNAYSIGVAEGIDLPDTHF 242
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
E L W + IG+ + E + G ++ FY+ I KR L Y+IDG V K+N ++ Q++L
Sbjct: 243 ERLQWLKSIGIPVNNEIQLCEGTENVLNFYRAIMQKRSTLGYDIDGTVIKVNDIALQEEL 302
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF S+APR+A+AYKF ++E LT + A+ Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 303 GFISKAPRWAIAYKFPAQEELTVLNAVEFQVGRTGAITPVAKLQPVFVAGVTVSNATLHN 362
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R ++ IGDTV++ R+G+VIP+I + RP +++ P CP+C S I+ IE
Sbjct: 363 GDEIARLDVAIGDTVIIRRAGDVIPQIIGVLHEKRPANAEKIVFPTECPVCGSVIVRIEG 422
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ + T DL+K++
Sbjct: 423 EAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGAKLIEQLVDREQIHTPADLFKLDL 481
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L RL+R+ K A N L ++QK+K TT +RFI+ALGIR VGE TA LAN+FK LE +
Sbjct: 482 NTLARLERMGLKSAQNALDSLQKAKKTTLARFIFALGIREVGEATALNLANHFKTLEALK 541
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL--------NNP---- 598
+AT EQL + +G F +P + ++ L GI+W +NP
Sbjct: 542 EATLEQLQEVQDVGEVVANRIFVFWREPHNVAVVEDLIAQGIHWETVEVKDVGDNPFKEK 601
Query: 599 --------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
G KV +S T+ +V G G KL KA +L +K++D
Sbjct: 602 TVVLTGTLTQMGRTEAKALLQQLGAKVSGSVSAKTDLVVAGDSAGSKLTKANELGVKVID 661
Query: 639 EKNFVKIVKGF 649
E F+ K +
Sbjct: 662 ENTFLAWSKPY 672
>gi|15832537|ref|NP_311310.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. Sakai]
gi|168768500|ref|ZP_02793507.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486]
gi|168778374|ref|ZP_02803381.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076]
gi|208813694|ref|ZP_03255023.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045]
gi|208821178|ref|ZP_03261498.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042]
gi|209399429|ref|YP_002271890.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
EC4115]
gi|217326968|ref|ZP_03443051.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588]
gi|254794365|ref|YP_003079202.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
TW14359]
gi|261223146|ref|ZP_05937427.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
FRIK2000]
gi|261259301|ref|ZP_05951834.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
FRIK966]
gi|291283640|ref|YP_003500458.1| DNA ligase [Escherichia coli O55:H7 str. CB9615]
gi|387507784|ref|YP_006160040.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str.
RM12579]
gi|387883613|ref|YP_006313915.1| NAD-dependent DNA ligase LigA [Escherichia coli Xuzhou21]
gi|416311077|ref|ZP_11656812.1| DNA ligase [Escherichia coli O157:H7 str. 1044]
gi|416321571|ref|ZP_11663419.1| DNA ligase [Escherichia coli O157:H7 str. EC1212]
gi|416329843|ref|ZP_11668970.1| DNA ligase [Escherichia coli O157:H7 str. 1125]
gi|416775743|ref|ZP_11874520.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. G5101]
gi|416787367|ref|ZP_11879431.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str.
493-89]
gi|416798998|ref|ZP_11884347.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str. H
2687]
gi|416809429|ref|ZP_11889031.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str.
3256-97]
gi|416820049|ref|ZP_11893589.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. USDA
5905]
gi|416830874|ref|ZP_11898879.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
LSU-61]
gi|419046382|ref|ZP_13593319.1| DNA ligase, NAD-dependent [Escherichia coli DEC3A]
gi|419052127|ref|ZP_13598998.1| DNA ligase, NAD-dependent [Escherichia coli DEC3B]
gi|419058161|ref|ZP_13604966.1| DNA ligase, NAD-dependent [Escherichia coli DEC3C]
gi|419063629|ref|ZP_13610357.1| DNA ligase, NAD-dependent [Escherichia coli DEC3D]
gi|419070525|ref|ZP_13616146.1| DNA ligase, NAD-dependent [Escherichia coli DEC3E]
gi|419076519|ref|ZP_13622034.1| DNA ligase, NAD-dependent [Escherichia coli DEC3F]
gi|419081608|ref|ZP_13627056.1| DNA ligase, NAD-dependent [Escherichia coli DEC4A]
gi|419087462|ref|ZP_13632818.1| DNA ligase, NAD-dependent [Escherichia coli DEC4B]
gi|419093508|ref|ZP_13638793.1| DNA ligase, NAD-dependent [Escherichia coli DEC4C]
gi|419099200|ref|ZP_13644398.1| DNA ligase, NAD-dependent [Escherichia coli DEC4D]
gi|419104980|ref|ZP_13650109.1| DNA ligase, NAD-dependent [Escherichia coli DEC4E]
gi|419110439|ref|ZP_13655495.1| DNA ligase, NAD-dependent [Escherichia coli DEC4F]
gi|419115800|ref|ZP_13660816.1| DNA ligase, NAD-dependent [Escherichia coli DEC5A]
gi|419121373|ref|ZP_13666329.1| DNA ligase, NAD-dependent [Escherichia coli DEC5B]
gi|419126945|ref|ZP_13671829.1| DNA ligase, NAD-dependent [Escherichia coli DEC5C]
gi|419132430|ref|ZP_13677267.1| DNA ligase, NAD-dependent [Escherichia coli DEC5D]
gi|419137465|ref|ZP_13682260.1| DNA ligase, NAD-dependent [Escherichia coli DEC5E]
gi|420270744|ref|ZP_14773102.1| DNA ligase, NAD-dependent [Escherichia coli PA22]
gi|420276419|ref|ZP_14778703.1| DNA ligase, NAD-dependent [Escherichia coli PA40]
gi|420281726|ref|ZP_14783962.1| DNA ligase, NAD-dependent [Escherichia coli TW06591]
gi|420287888|ref|ZP_14790074.1| DNA ligase, NAD-dependent [Escherichia coli TW10246]
gi|420293448|ref|ZP_14795564.1| DNA ligase, NAD-dependent [Escherichia coli TW11039]
gi|420299239|ref|ZP_14801288.1| DNA ligase, NAD-dependent [Escherichia coli TW09109]
gi|420305144|ref|ZP_14807138.1| DNA ligase, NAD-dependent [Escherichia coli TW10119]
gi|420310694|ref|ZP_14812627.1| DNA ligase, NAD-dependent [Escherichia coli EC1738]
gi|420316386|ref|ZP_14818261.1| DNA ligase, NAD-dependent [Escherichia coli EC1734]
gi|421813405|ref|ZP_16249123.1| DNA ligase, NAD-dependent [Escherichia coli 8.0416]
gi|421819219|ref|ZP_16254715.1| DNA ligase, NAD-dependent [Escherichia coli 10.0821]
gi|421825040|ref|ZP_16260407.1| DNA ligase, NAD-dependent [Escherichia coli FRIK920]
gi|421831947|ref|ZP_16267234.1| DNA ligase, NAD-dependent [Escherichia coli PA7]
gi|423726128|ref|ZP_17700189.1| DNA ligase, NAD-dependent [Escherichia coli PA31]
gi|424078505|ref|ZP_17815496.1| DNA ligase, NAD-dependent [Escherichia coli FDA505]
gi|424084920|ref|ZP_17821423.1| DNA ligase, NAD-dependent [Escherichia coli FDA517]
gi|424091376|ref|ZP_17827321.1| DNA ligase, NAD-dependent [Escherichia coli FRIK1996]
gi|424097997|ref|ZP_17833320.1| DNA ligase, NAD-dependent [Escherichia coli FRIK1985]
gi|424104232|ref|ZP_17839013.1| DNA ligase, NAD-dependent [Escherichia coli FRIK1990]
gi|424110906|ref|ZP_17845150.1| DNA ligase, NAD-dependent [Escherichia coli 93-001]
gi|424116845|ref|ZP_17850693.1| DNA ligase, NAD-dependent [Escherichia coli PA3]
gi|424123028|ref|ZP_17856359.1| DNA ligase, NAD-dependent [Escherichia coli PA5]
gi|424129191|ref|ZP_17862107.1| DNA ligase, NAD-dependent [Escherichia coli PA9]
gi|424135465|ref|ZP_17867937.1| DNA ligase, NAD-dependent [Escherichia coli PA10]
gi|424142028|ref|ZP_17873924.1| DNA ligase, NAD-dependent [Escherichia coli PA14]
gi|424148459|ref|ZP_17879843.1| DNA ligase, NAD-dependent [Escherichia coli PA15]
gi|424154276|ref|ZP_17885241.1| DNA ligase, NAD-dependent [Escherichia coli PA24]
gi|424250389|ref|ZP_17890804.1| DNA ligase, NAD-dependent [Escherichia coli PA25]
gi|424328584|ref|ZP_17896716.1| DNA ligase, NAD-dependent [Escherichia coli PA28]
gi|424450712|ref|ZP_17902427.1| DNA ligase, NAD-dependent [Escherichia coli PA32]
gi|424456911|ref|ZP_17908057.1| DNA ligase, NAD-dependent [Escherichia coli PA33]
gi|424463345|ref|ZP_17913796.1| DNA ligase, NAD-dependent [Escherichia coli PA39]
gi|424469687|ref|ZP_17919520.1| DNA ligase, NAD-dependent [Escherichia coli PA41]
gi|424476213|ref|ZP_17925538.1| DNA ligase, NAD-dependent [Escherichia coli PA42]
gi|424481965|ref|ZP_17930955.1| DNA ligase, NAD-dependent [Escherichia coli TW07945]
gi|424488124|ref|ZP_17936701.1| DNA ligase, NAD-dependent [Escherichia coli TW09098]
gi|424494686|ref|ZP_17942425.1| DNA ligase, NAD-dependent [Escherichia coli TW09195]
gi|424501496|ref|ZP_17948402.1| DNA ligase, NAD-dependent [Escherichia coli EC4203]
gi|424507743|ref|ZP_17954148.1| DNA ligase, NAD-dependent [Escherichia coli EC4196]
gi|424515060|ref|ZP_17959756.1| DNA ligase, NAD-dependent [Escherichia coli TW14313]
gi|424521284|ref|ZP_17965421.1| DNA ligase, NAD-dependent [Escherichia coli TW14301]
gi|424527174|ref|ZP_17970899.1| DNA ligase, NAD-dependent [Escherichia coli EC4421]
gi|424533324|ref|ZP_17976683.1| DNA ligase, NAD-dependent [Escherichia coli EC4422]
gi|424539424|ref|ZP_17982376.1| DNA ligase, NAD-dependent [Escherichia coli EC4013]
gi|424545475|ref|ZP_17987890.1| DNA ligase, NAD-dependent [Escherichia coli EC4402]
gi|424551715|ref|ZP_17993583.1| DNA ligase, NAD-dependent [Escherichia coli EC4439]
gi|424557900|ref|ZP_17999326.1| DNA ligase, NAD-dependent [Escherichia coli EC4436]
gi|424564249|ref|ZP_18005259.1| DNA ligase, NAD-dependent [Escherichia coli EC4437]
gi|424570378|ref|ZP_18010941.1| DNA ligase, NAD-dependent [Escherichia coli EC4448]
gi|424576528|ref|ZP_18016612.1| DNA ligase, NAD-dependent [Escherichia coli EC1845]
gi|424582367|ref|ZP_18022021.1| DNA ligase, NAD-dependent [Escherichia coli EC1863]
gi|425099074|ref|ZP_18501813.1| DNA ligase, NAD-dependent [Escherichia coli 3.4870]
gi|425105134|ref|ZP_18507460.1| DNA ligase, NAD-dependent [Escherichia coli 5.2239]
gi|425111147|ref|ZP_18513074.1| DNA ligase, NAD-dependent [Escherichia coli 6.0172]
gi|425127073|ref|ZP_18528250.1| DNA ligase, NAD-dependent [Escherichia coli 8.0586]
gi|425132807|ref|ZP_18533664.1| DNA ligase, NAD-dependent [Escherichia coli 8.2524]
gi|425139314|ref|ZP_18539703.1| DNA ligase, NAD-dependent [Escherichia coli 10.0833]
gi|425145088|ref|ZP_18545091.1| DNA ligase, NAD-dependent [Escherichia coli 10.0869]
gi|425151217|ref|ZP_18550838.1| DNA ligase, NAD-dependent [Escherichia coli 88.0221]
gi|425157077|ref|ZP_18556350.1| DNA ligase, NAD-dependent [Escherichia coli PA34]
gi|425163438|ref|ZP_18562333.1| DNA ligase, NAD-dependent [Escherichia coli FDA506]
gi|425169175|ref|ZP_18567659.1| DNA ligase, NAD-dependent [Escherichia coli FDA507]
gi|425175240|ref|ZP_18573369.1| DNA ligase, NAD-dependent [Escherichia coli FDA504]
gi|425181269|ref|ZP_18578975.1| DNA ligase, NAD-dependent [Escherichia coli FRIK1999]
gi|425187539|ref|ZP_18584822.1| DNA ligase, NAD-dependent [Escherichia coli FRIK1997]
gi|425194311|ref|ZP_18591090.1| DNA ligase, NAD-dependent [Escherichia coli NE1487]
gi|425200786|ref|ZP_18597004.1| DNA ligase, NAD-dependent [Escherichia coli NE037]
gi|425207169|ref|ZP_18602978.1| DNA ligase, NAD-dependent [Escherichia coli FRIK2001]
gi|425212928|ref|ZP_18608338.1| DNA ligase, NAD-dependent [Escherichia coli PA4]
gi|425219047|ref|ZP_18614024.1| DNA ligase, NAD-dependent [Escherichia coli PA23]
gi|425225599|ref|ZP_18620076.1| DNA ligase, NAD-dependent [Escherichia coli PA49]
gi|425231863|ref|ZP_18625912.1| DNA ligase, NAD-dependent [Escherichia coli PA45]
gi|425237779|ref|ZP_18631508.1| DNA ligase, NAD-dependent [Escherichia coli TT12B]
gi|425243995|ref|ZP_18637313.1| DNA ligase, NAD-dependent [Escherichia coli MA6]
gi|425250160|ref|ZP_18643106.1| DNA ligase, NAD-dependent [Escherichia coli 5905]
gi|425255989|ref|ZP_18648517.1| DNA ligase, NAD-dependent [Escherichia coli CB7326]
gi|425262230|ref|ZP_18654249.1| DNA ligase, NAD-dependent [Escherichia coli EC96038]
gi|425268246|ref|ZP_18659885.1| DNA ligase, NAD-dependent [Escherichia coli 5412]
gi|425295682|ref|ZP_18685893.1| DNA ligase, NAD-dependent [Escherichia coli PA38]
gi|425312388|ref|ZP_18701581.1| DNA ligase, NAD-dependent [Escherichia coli EC1735]
gi|425318382|ref|ZP_18707180.1| DNA ligase, NAD-dependent [Escherichia coli EC1736]
gi|425324449|ref|ZP_18712828.1| DNA ligase, NAD-dependent [Escherichia coli EC1737]
gi|425330815|ref|ZP_18718680.1| DNA ligase, NAD-dependent [Escherichia coli EC1846]
gi|425336989|ref|ZP_18724371.1| DNA ligase, NAD-dependent [Escherichia coli EC1847]
gi|425343333|ref|ZP_18730232.1| DNA ligase, NAD-dependent [Escherichia coli EC1848]
gi|425349142|ref|ZP_18735619.1| DNA ligase, NAD-dependent [Escherichia coli EC1849]
gi|425355434|ref|ZP_18741509.1| DNA ligase, NAD-dependent [Escherichia coli EC1850]
gi|425361397|ref|ZP_18747054.1| DNA ligase, NAD-dependent [Escherichia coli EC1856]
gi|425367580|ref|ZP_18752750.1| DNA ligase, NAD-dependent [Escherichia coli EC1862]
gi|425373931|ref|ZP_18758581.1| DNA ligase, NAD-dependent [Escherichia coli EC1864]
gi|425386819|ref|ZP_18770385.1| DNA ligase, NAD-dependent [Escherichia coli EC1866]
gi|425393505|ref|ZP_18776620.1| DNA ligase, NAD-dependent [Escherichia coli EC1868]
gi|425399603|ref|ZP_18782317.1| DNA ligase, NAD-dependent [Escherichia coli EC1869]
gi|425405693|ref|ZP_18787924.1| DNA ligase, NAD-dependent [Escherichia coli EC1870]
gi|425412084|ref|ZP_18793855.1| DNA ligase, NAD-dependent [Escherichia coli NE098]
gi|425418404|ref|ZP_18799683.1| DNA ligase, NAD-dependent [Escherichia coli FRIK523]
gi|425429666|ref|ZP_18810286.1| DNA ligase, NAD-dependent [Escherichia coli 0.1304]
gi|428948083|ref|ZP_19020378.1| DNA ligase, NAD-dependent [Escherichia coli 88.1467]
gi|428954182|ref|ZP_19025991.1| DNA ligase, NAD-dependent [Escherichia coli 88.1042]
gi|428960147|ref|ZP_19031465.1| DNA ligase, NAD-dependent [Escherichia coli 89.0511]
gi|428972541|ref|ZP_19042892.1| DNA ligase, NAD-dependent [Escherichia coli 90.0039]
gi|428979051|ref|ZP_19048890.1| DNA ligase, NAD-dependent [Escherichia coli 90.2281]
gi|428984781|ref|ZP_19054187.1| DNA ligase, NAD-dependent [Escherichia coli 93.0055]
gi|428990896|ref|ZP_19059897.1| DNA ligase, NAD-dependent [Escherichia coli 93.0056]
gi|428996759|ref|ZP_19065368.1| DNA ligase, NAD-dependent [Escherichia coli 94.0618]
gi|429003006|ref|ZP_19071143.1| DNA ligase, NAD-dependent [Escherichia coli 95.0183]
gi|429009090|ref|ZP_19076617.1| DNA ligase, NAD-dependent [Escherichia coli 95.1288]
gi|429015621|ref|ZP_19082526.1| DNA ligase, NAD-dependent [Escherichia coli 95.0943]
gi|429021481|ref|ZP_19088016.1| DNA ligase, NAD-dependent [Escherichia coli 96.0428]
gi|429027553|ref|ZP_19093568.1| DNA ligase, NAD-dependent [Escherichia coli 96.0427]
gi|429033689|ref|ZP_19099226.1| DNA ligase, NAD-dependent [Escherichia coli 96.0939]
gi|429039795|ref|ZP_19104917.1| DNA ligase, NAD-dependent [Escherichia coli 96.0932]
gi|429045771|ref|ZP_19110497.1| DNA ligase, NAD-dependent [Escherichia coli 96.0107]
gi|429051129|ref|ZP_19115700.1| DNA ligase, NAD-dependent [Escherichia coli 97.0003]
gi|429056485|ref|ZP_19120817.1| DNA ligase, NAD-dependent [Escherichia coli 97.1742]
gi|429061999|ref|ZP_19126027.1| DNA ligase, NAD-dependent [Escherichia coli 97.0007]
gi|429068275|ref|ZP_19131753.1| DNA ligase, NAD-dependent [Escherichia coli 99.0672]
gi|429074224|ref|ZP_19137481.1| DNA ligase, NAD-dependent [Escherichia coli 99.0678]
gi|429079416|ref|ZP_19142556.1| DNA ligase, NAD-dependent [Escherichia coli 99.0713]
gi|429827430|ref|ZP_19358486.1| DNA ligase, NAD-dependent [Escherichia coli 96.0109]
gi|429833793|ref|ZP_19364156.1| DNA ligase, NAD-dependent [Escherichia coli 97.0010]
gi|444925969|ref|ZP_21245272.1| DNA ligase, NAD-dependent [Escherichia coli 09BKT078844]
gi|444931679|ref|ZP_21250724.1| DNA ligase, NAD-dependent [Escherichia coli 99.0814]
gi|444937128|ref|ZP_21255910.1| DNA ligase, NAD-dependent [Escherichia coli 99.0815]
gi|444942760|ref|ZP_21261282.1| DNA ligase, NAD-dependent [Escherichia coli 99.0816]
gi|444948237|ref|ZP_21266552.1| DNA ligase, NAD-dependent [Escherichia coli 99.0839]
gi|444953788|ref|ZP_21271888.1| DNA ligase, NAD-dependent [Escherichia coli 99.0848]
gi|444959312|ref|ZP_21277169.1| DNA ligase, NAD-dependent [Escherichia coli 99.1753]
gi|444970444|ref|ZP_21287811.1| DNA ligase, NAD-dependent [Escherichia coli 99.1793]
gi|444975729|ref|ZP_21292857.1| DNA ligase, NAD-dependent [Escherichia coli 99.1805]
gi|444981107|ref|ZP_21298024.1| DNA ligase, NAD-dependent [Escherichia coli ATCC 700728]
gi|444986510|ref|ZP_21303295.1| DNA ligase, NAD-dependent [Escherichia coli PA11]
gi|444991826|ref|ZP_21308473.1| DNA ligase, NAD-dependent [Escherichia coli PA19]
gi|444997130|ref|ZP_21313632.1| DNA ligase, NAD-dependent [Escherichia coli PA13]
gi|445002708|ref|ZP_21319101.1| DNA ligase, NAD-dependent [Escherichia coli PA2]
gi|445008146|ref|ZP_21324389.1| DNA ligase, NAD-dependent [Escherichia coli PA47]
gi|445013222|ref|ZP_21329334.1| DNA ligase, NAD-dependent [Escherichia coli PA48]
gi|445019107|ref|ZP_21335076.1| DNA ligase, NAD-dependent [Escherichia coli PA8]
gi|445024562|ref|ZP_21340390.1| DNA ligase, NAD-dependent [Escherichia coli 7.1982]
gi|445029895|ref|ZP_21345575.1| DNA ligase, NAD-dependent [Escherichia coli 99.1781]
gi|445035364|ref|ZP_21350900.1| DNA ligase, NAD-dependent [Escherichia coli 99.1762]
gi|445040989|ref|ZP_21356366.1| DNA ligase, NAD-dependent [Escherichia coli PA35]
gi|445046165|ref|ZP_21361421.1| DNA ligase, NAD-dependent [Escherichia coli 3.4880]
gi|445057502|ref|ZP_21372365.1| DNA ligase, NAD-dependent [Escherichia coli 99.0670]
gi|166215595|sp|Q8XBL5.3|DNLJ_ECO57 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|254781320|sp|B5YZV8.1|DNLJ_ECO5E RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|13362753|dbj|BAB36706.1| DNA ligase [Escherichia coli O157:H7 str. Sakai]
gi|189003243|gb|EDU72229.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076]
gi|189362250|gb|EDU80669.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486]
gi|208734971|gb|EDZ83658.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045]
gi|208741301|gb|EDZ88983.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042]
gi|209160829|gb|ACI38262.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4115]
gi|209764248|gb|ACI80436.1| DNA ligase [Escherichia coli]
gi|209764250|gb|ACI80437.1| DNA ligase [Escherichia coli]
gi|209764252|gb|ACI80438.1| DNA ligase [Escherichia coli]
gi|209764256|gb|ACI80440.1| DNA ligase [Escherichia coli]
gi|217319335|gb|EEC27760.1| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588]
gi|254593765|gb|ACT73126.1| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str.
TW14359]
gi|290763513|gb|ADD57474.1| DNA ligase [Escherichia coli O55:H7 str. CB9615]
gi|320188751|gb|EFW63410.1| DNA ligase [Escherichia coli O157:H7 str. EC1212]
gi|320640925|gb|EFX10409.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. G5101]
gi|320646206|gb|EFX15133.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str.
493-89]
gi|320651712|gb|EFX20092.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H- str. H
2687]
gi|320657097|gb|EFX24906.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|320662857|gb|EFX30185.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str. USDA
5905]
gi|320667743|gb|EFX34654.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
LSU-61]
gi|326340214|gb|EGD64018.1| DNA ligase [Escherichia coli O157:H7 str. 1125]
gi|326344216|gb|EGD67977.1| DNA ligase [Escherichia coli O157:H7 str. 1044]
gi|374359778|gb|AEZ41485.1| NAD-dependent DNA ligase LigA [Escherichia coli O55:H7 str.
RM12579]
gi|377892756|gb|EHU57196.1| DNA ligase, NAD-dependent [Escherichia coli DEC3B]
gi|377893212|gb|EHU57651.1| DNA ligase, NAD-dependent [Escherichia coli DEC3A]
gi|377904748|gb|EHU69026.1| DNA ligase, NAD-dependent [Escherichia coli DEC3C]
gi|377910104|gb|EHU74302.1| DNA ligase, NAD-dependent [Escherichia coli DEC3D]
gi|377911499|gb|EHU75668.1| DNA ligase, NAD-dependent [Escherichia coli DEC3E]
gi|377921101|gb|EHU85111.1| DNA ligase, NAD-dependent [Escherichia coli DEC3F]
gi|377926238|gb|EHU90173.1| DNA ligase, NAD-dependent [Escherichia coli DEC4A]
gi|377929717|gb|EHU93605.1| DNA ligase, NAD-dependent [Escherichia coli DEC4B]
gi|377941580|gb|EHV05318.1| DNA ligase, NAD-dependent [Escherichia coli DEC4D]
gi|377941950|gb|EHV05687.1| DNA ligase, NAD-dependent [Escherichia coli DEC4C]
gi|377947463|gb|EHV11130.1| DNA ligase, NAD-dependent [Escherichia coli DEC4E]
gi|377956695|gb|EHV20238.1| DNA ligase, NAD-dependent [Escherichia coli DEC4F]
gi|377959909|gb|EHV23400.1| DNA ligase, NAD-dependent [Escherichia coli DEC5A]
gi|377966597|gb|EHV30008.1| DNA ligase, NAD-dependent [Escherichia coli DEC5B]
gi|377974001|gb|EHV37330.1| DNA ligase, NAD-dependent [Escherichia coli DEC5C]
gi|377975393|gb|EHV38714.1| DNA ligase, NAD-dependent [Escherichia coli DEC5D]
gi|377983882|gb|EHV47123.1| DNA ligase, NAD-dependent [Escherichia coli DEC5E]
gi|386797071|gb|AFJ30105.1| NAD-dependent DNA ligase LigA [Escherichia coli Xuzhou21]
gi|390641195|gb|EIN20627.1| DNA ligase, NAD-dependent [Escherichia coli FRIK1996]
gi|390642646|gb|EIN22035.1| DNA ligase, NAD-dependent [Escherichia coli FDA517]
gi|390643484|gb|EIN22823.1| DNA ligase, NAD-dependent [Escherichia coli FDA505]
gi|390659894|gb|EIN37631.1| DNA ligase, NAD-dependent [Escherichia coli 93-001]
gi|390661622|gb|EIN39274.1| DNA ligase, NAD-dependent [Escherichia coli FRIK1985]
gi|390663048|gb|EIN40573.1| DNA ligase, NAD-dependent [Escherichia coli FRIK1990]
gi|390676811|gb|EIN52889.1| DNA ligase, NAD-dependent [Escherichia coli PA3]
gi|390680163|gb|EIN56018.1| DNA ligase, NAD-dependent [Escherichia coli PA5]
gi|390683270|gb|EIN58966.1| DNA ligase, NAD-dependent [Escherichia coli PA9]
gi|390695726|gb|EIN70237.1| DNA ligase, NAD-dependent [Escherichia coli PA10]
gi|390700251|gb|EIN74562.1| DNA ligase, NAD-dependent [Escherichia coli PA15]
gi|390700671|gb|EIN74952.1| DNA ligase, NAD-dependent [Escherichia coli PA14]
gi|390714256|gb|EIN87170.1| DNA ligase, NAD-dependent [Escherichia coli PA22]
gi|390722147|gb|EIN94836.1| DNA ligase, NAD-dependent [Escherichia coli PA25]
gi|390723734|gb|EIN96317.1| DNA ligase, NAD-dependent [Escherichia coli PA24]
gi|390726699|gb|EIN99137.1| DNA ligase, NAD-dependent [Escherichia coli PA28]
gi|390741696|gb|EIO12750.1| DNA ligase, NAD-dependent [Escherichia coli PA31]
gi|390742127|gb|EIO13143.1| DNA ligase, NAD-dependent [Escherichia coli PA32]
gi|390744773|gb|EIO15614.1| DNA ligase, NAD-dependent [Escherichia coli PA33]
gi|390757829|gb|EIO27299.1| DNA ligase, NAD-dependent [Escherichia coli PA40]
gi|390766857|gb|EIO35966.1| DNA ligase, NAD-dependent [Escherichia coli PA41]
gi|390768237|gb|EIO37276.1| DNA ligase, NAD-dependent [Escherichia coli PA39]
gi|390768585|gb|EIO37616.1| DNA ligase, NAD-dependent [Escherichia coli PA42]
gi|390781063|gb|EIO48752.1| DNA ligase, NAD-dependent [Escherichia coli TW06591]
gi|390789627|gb|EIO57076.1| DNA ligase, NAD-dependent [Escherichia coli TW10246]
gi|390790020|gb|EIO57449.1| DNA ligase, NAD-dependent [Escherichia coli TW07945]
gi|390795771|gb|EIO63048.1| DNA ligase, NAD-dependent [Escherichia coli TW11039]
gi|390805363|gb|EIO72310.1| DNA ligase, NAD-dependent [Escherichia coli TW09098]
gi|390806934|gb|EIO73836.1| DNA ligase, NAD-dependent [Escherichia coli TW09109]
gi|390815449|gb|EIO81977.1| DNA ligase, NAD-dependent [Escherichia coli TW10119]
gi|390825571|gb|EIO91490.1| DNA ligase, NAD-dependent [Escherichia coli EC4203]
gi|390830117|gb|EIO95684.1| DNA ligase, NAD-dependent [Escherichia coli TW09195]
gi|390830267|gb|EIO95814.1| DNA ligase, NAD-dependent [Escherichia coli EC4196]
gi|390845785|gb|EIP09410.1| DNA ligase, NAD-dependent [Escherichia coli TW14301]
gi|390846140|gb|EIP09752.1| DNA ligase, NAD-dependent [Escherichia coli TW14313]
gi|390850100|gb|EIP13488.1| DNA ligase, NAD-dependent [Escherichia coli EC4421]
gi|390860846|gb|EIP23128.1| DNA ligase, NAD-dependent [Escherichia coli EC4422]
gi|390864776|gb|EIP26845.1| DNA ligase, NAD-dependent [Escherichia coli EC4013]
gi|390870277|gb|EIP31827.1| DNA ligase, NAD-dependent [Escherichia coli EC4402]
gi|390878150|gb|EIP39025.1| DNA ligase, NAD-dependent [Escherichia coli EC4439]
gi|390883330|gb|EIP43772.1| DNA ligase, NAD-dependent [Escherichia coli EC4436]
gi|390892861|gb|EIP52431.1| DNA ligase, NAD-dependent [Escherichia coli EC4437]
gi|390895390|gb|EIP54855.1| DNA ligase, NAD-dependent [Escherichia coli EC4448]
gi|390899973|gb|EIP59209.1| DNA ligase, NAD-dependent [Escherichia coli EC1738]
gi|390907750|gb|EIP66603.1| DNA ligase, NAD-dependent [Escherichia coli EC1734]
gi|390918611|gb|EIP77000.1| DNA ligase, NAD-dependent [Escherichia coli EC1863]
gi|390919883|gb|EIP78203.1| DNA ligase, NAD-dependent [Escherichia coli EC1845]
gi|408064319|gb|EKG98801.1| DNA ligase, NAD-dependent [Escherichia coli PA7]
gi|408068092|gb|EKH02520.1| DNA ligase, NAD-dependent [Escherichia coli FRIK920]
gi|408069782|gb|EKH04164.1| DNA ligase, NAD-dependent [Escherichia coli PA34]
gi|408079026|gb|EKH13154.1| DNA ligase, NAD-dependent [Escherichia coli FDA506]
gi|408082489|gb|EKH16455.1| DNA ligase, NAD-dependent [Escherichia coli FDA507]
gi|408091249|gb|EKH24483.1| DNA ligase, NAD-dependent [Escherichia coli FDA504]
gi|408097294|gb|EKH30193.1| DNA ligase, NAD-dependent [Escherichia coli FRIK1999]
gi|408103593|gb|EKH35923.1| DNA ligase, NAD-dependent [Escherichia coli FRIK1997]
gi|408108171|gb|EKH40188.1| DNA ligase, NAD-dependent [Escherichia coli NE1487]
gi|408114793|gb|EKH46313.1| DNA ligase, NAD-dependent [Escherichia coli NE037]
gi|408120511|gb|EKH51487.1| DNA ligase, NAD-dependent [Escherichia coli FRIK2001]
gi|408127059|gb|EKH57563.1| DNA ligase, NAD-dependent [Escherichia coli PA4]
gi|408137410|gb|EKH67111.1| DNA ligase, NAD-dependent [Escherichia coli PA23]
gi|408139615|gb|EKH69212.1| DNA ligase, NAD-dependent [Escherichia coli PA49]
gi|408145700|gb|EKH74850.1| DNA ligase, NAD-dependent [Escherichia coli PA45]
gi|408154730|gb|EKH83060.1| DNA ligase, NAD-dependent [Escherichia coli TT12B]
gi|408159493|gb|EKH87546.1| DNA ligase, NAD-dependent [Escherichia coli MA6]
gi|408163343|gb|EKH91209.1| DNA ligase, NAD-dependent [Escherichia coli 5905]
gi|408173097|gb|EKI00143.1| DNA ligase, NAD-dependent [Escherichia coli CB7326]
gi|408179980|gb|EKI06625.1| DNA ligase, NAD-dependent [Escherichia coli EC96038]
gi|408182582|gb|EKI09084.1| DNA ligase, NAD-dependent [Escherichia coli 5412]
gi|408217149|gb|EKI41425.1| DNA ligase, NAD-dependent [Escherichia coli PA38]
gi|408226855|gb|EKI50479.1| DNA ligase, NAD-dependent [Escherichia coli EC1735]
gi|408238012|gb|EKI60847.1| DNA ligase, NAD-dependent [Escherichia coli EC1736]
gi|408242092|gb|EKI64694.1| DNA ligase, NAD-dependent [Escherichia coli EC1737]
gi|408246186|gb|EKI68484.1| DNA ligase, NAD-dependent [Escherichia coli EC1846]
gi|408255018|gb|EKI76481.1| DNA ligase, NAD-dependent [Escherichia coli EC1847]
gi|408258451|gb|EKI79711.1| DNA ligase, NAD-dependent [Escherichia coli EC1848]
gi|408264970|gb|EKI85725.1| DNA ligase, NAD-dependent [Escherichia coli EC1849]
gi|408273827|gb|EKI93867.1| DNA ligase, NAD-dependent [Escherichia coli EC1850]
gi|408276619|gb|EKI96503.1| DNA ligase, NAD-dependent [Escherichia coli EC1856]
gi|408285747|gb|EKJ04730.1| DNA ligase, NAD-dependent [Escherichia coli EC1862]
gi|408290555|gb|EKJ09259.1| DNA ligase, NAD-dependent [Escherichia coli EC1864]
gi|408307352|gb|EKJ24693.1| DNA ligase, NAD-dependent [Escherichia coli EC1868]
gi|408307562|gb|EKJ24891.1| DNA ligase, NAD-dependent [Escherichia coli EC1866]
gi|408318560|gb|EKJ34763.1| DNA ligase, NAD-dependent [Escherichia coli EC1869]
gi|408324546|gb|EKJ40472.1| DNA ligase, NAD-dependent [Escherichia coli EC1870]
gi|408325868|gb|EKJ41713.1| DNA ligase, NAD-dependent [Escherichia coli NE098]
gi|408336090|gb|EKJ50889.1| DNA ligase, NAD-dependent [Escherichia coli FRIK523]
gi|408345877|gb|EKJ60188.1| DNA ligase, NAD-dependent [Escherichia coli 0.1304]
gi|408549046|gb|EKK26408.1| DNA ligase, NAD-dependent [Escherichia coli 3.4870]
gi|408549292|gb|EKK26653.1| DNA ligase, NAD-dependent [Escherichia coli 5.2239]
gi|408550325|gb|EKK27654.1| DNA ligase, NAD-dependent [Escherichia coli 6.0172]
gi|408568682|gb|EKK44707.1| DNA ligase, NAD-dependent [Escherichia coli 8.0586]
gi|408578368|gb|EKK53886.1| DNA ligase, NAD-dependent [Escherichia coli 10.0833]
gi|408581003|gb|EKK56370.1| DNA ligase, NAD-dependent [Escherichia coli 8.2524]
gi|408591122|gb|EKK65570.1| DNA ligase, NAD-dependent [Escherichia coli 10.0869]
gi|408595966|gb|EKK70158.1| DNA ligase, NAD-dependent [Escherichia coli 88.0221]
gi|408600600|gb|EKK74433.1| DNA ligase, NAD-dependent [Escherichia coli 8.0416]
gi|408612140|gb|EKK85485.1| DNA ligase, NAD-dependent [Escherichia coli 10.0821]
gi|427204261|gb|EKV74538.1| DNA ligase, NAD-dependent [Escherichia coli 88.1042]
gi|427206314|gb|EKV76527.1| DNA ligase, NAD-dependent [Escherichia coli 89.0511]
gi|427208300|gb|EKV78433.1| DNA ligase, NAD-dependent [Escherichia coli 88.1467]
gi|427224203|gb|EKV92924.1| DNA ligase, NAD-dependent [Escherichia coli 90.2281]
gi|427227686|gb|EKV96217.1| DNA ligase, NAD-dependent [Escherichia coli 90.0039]
gi|427241387|gb|EKW08818.1| DNA ligase, NAD-dependent [Escherichia coli 93.0056]
gi|427241886|gb|EKW09305.1| DNA ligase, NAD-dependent [Escherichia coli 93.0055]
gi|427245543|gb|EKW12824.1| DNA ligase, NAD-dependent [Escherichia coli 94.0618]
gi|427260459|gb|EKW26442.1| DNA ligase, NAD-dependent [Escherichia coli 95.0183]
gi|427260965|gb|EKW26915.1| DNA ligase, NAD-dependent [Escherichia coli 95.0943]
gi|427264175|gb|EKW29865.1| DNA ligase, NAD-dependent [Escherichia coli 95.1288]
gi|427276062|gb|EKW40641.1| DNA ligase, NAD-dependent [Escherichia coli 96.0428]
gi|427278759|gb|EKW43214.1| DNA ligase, NAD-dependent [Escherichia coli 96.0427]
gi|427283065|gb|EKW47298.1| DNA ligase, NAD-dependent [Escherichia coli 96.0939]
gi|427291529|gb|EKW54926.1| DNA ligase, NAD-dependent [Escherichia coli 96.0932]
gi|427298986|gb|EKW61976.1| DNA ligase, NAD-dependent [Escherichia coli 96.0107]
gi|427300029|gb|EKW62981.1| DNA ligase, NAD-dependent [Escherichia coli 97.0003]
gi|427312473|gb|EKW74627.1| DNA ligase, NAD-dependent [Escherichia coli 97.1742]
gi|427315091|gb|EKW77102.1| DNA ligase, NAD-dependent [Escherichia coli 97.0007]
gi|427319221|gb|EKW81043.1| DNA ligase, NAD-dependent [Escherichia coli 99.0672]
gi|427327611|gb|EKW88995.1| DNA ligase, NAD-dependent [Escherichia coli 99.0678]
gi|427328748|gb|EKW90099.1| DNA ligase, NAD-dependent [Escherichia coli 99.0713]
gi|429253441|gb|EKY37927.1| DNA ligase, NAD-dependent [Escherichia coli 96.0109]
gi|429254998|gb|EKY39351.1| DNA ligase, NAD-dependent [Escherichia coli 97.0010]
gi|444537679|gb|ELV17588.1| DNA ligase, NAD-dependent [Escherichia coli 99.0814]
gi|444539240|gb|ELV19006.1| DNA ligase, NAD-dependent [Escherichia coli 09BKT078844]
gi|444547346|gb|ELV25967.1| DNA ligase, NAD-dependent [Escherichia coli 99.0815]
gi|444556938|gb|ELV34303.1| DNA ligase, NAD-dependent [Escherichia coli 99.0839]
gi|444557664|gb|ELV34989.1| DNA ligase, NAD-dependent [Escherichia coli 99.0816]
gi|444562979|gb|ELV40014.1| DNA ligase, NAD-dependent [Escherichia coli 99.0848]
gi|444572490|gb|ELV48912.1| DNA ligase, NAD-dependent [Escherichia coli 99.1753]
gi|444578877|gb|ELV54898.1| DNA ligase, NAD-dependent [Escherichia coli 99.1793]
gi|444592827|gb|ELV68065.1| DNA ligase, NAD-dependent [Escherichia coli PA11]
gi|444593262|gb|ELV68487.1| DNA ligase, NAD-dependent [Escherichia coli ATCC 700728]
gi|444594667|gb|ELV69822.1| DNA ligase, NAD-dependent [Escherichia coli 99.1805]
gi|444606269|gb|ELV80888.1| DNA ligase, NAD-dependent [Escherichia coli PA13]
gi|444606676|gb|ELV81282.1| DNA ligase, NAD-dependent [Escherichia coli PA19]
gi|444615214|gb|ELV89420.1| DNA ligase, NAD-dependent [Escherichia coli PA2]
gi|444622736|gb|ELV96680.1| DNA ligase, NAD-dependent [Escherichia coli PA47]
gi|444623981|gb|ELV97890.1| DNA ligase, NAD-dependent [Escherichia coli PA48]
gi|444629255|gb|ELW02959.1| DNA ligase, NAD-dependent [Escherichia coli PA8]
gi|444638095|gb|ELW11446.1| DNA ligase, NAD-dependent [Escherichia coli 7.1982]
gi|444640714|gb|ELW13969.1| DNA ligase, NAD-dependent [Escherichia coli 99.1781]
gi|444644779|gb|ELW17874.1| DNA ligase, NAD-dependent [Escherichia coli 99.1762]
gi|444653868|gb|ELW26563.1| DNA ligase, NAD-dependent [Escherichia coli PA35]
gi|444659500|gb|ELW31911.1| DNA ligase, NAD-dependent [Escherichia coli 3.4880]
gi|444669569|gb|ELW41545.1| DNA ligase, NAD-dependent [Escherichia coli 99.0670]
Length = 671
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTYCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|304398312|ref|ZP_07380186.1| DNA ligase, NAD-dependent [Pantoea sp. aB]
gi|440757408|ref|ZP_20936596.1| DNA ligase [Pantoea agglomerans 299R]
gi|304354178|gb|EFM18551.1| DNA ligase, NAD-dependent [Pantoea sp. aB]
gi|436428967|gb|ELP26616.1| DNA ligase [Pantoea agglomerans 299R]
Length = 672
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 399/664 (60%), Gaps = 36/664 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+TEL+ L H Y++ D P + D +YD+L+ EL+++EE++P+L+T DS TQ VG
Sbjct: 8 ITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRQLEEEHPDLITPDSPTQRVGAAPL 67
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
+ V H M+SLDN F + + FNKR+ + LK +++I Y ELK DG AV+L YE
Sbjct: 68 TVFEQVRHEVPMLSLDNAFDEATFMAFNKRVQDRLKNSEDITYCCELKLDGAAVSLMYEN 127
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L QA+TRGDG GENIT N+ I IPL L P LEVR EV + ++ F KLN+
Sbjct: 128 GLLVQAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRGEVFMTQRGFEKLNEE 187
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
K F NPRNAAAG LRQL+P+I + L FF +G G L G MP SH L ++
Sbjct: 188 ARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEMPHSHMARLQQFK 247
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
GL + + + + FY++I +R NL ++IDGVV K++ + Q++LGF +RAP
Sbjct: 248 AWGLPVSDRIKRVHNAEEALAFYREIEQQRPNLGFDIDGVVIKVDSQALQEQLGFVARAP 307
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+A+KF ++E LT ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 308 RWAIAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIERL 367
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
++IGD VV+ R+G+VIP++ + +++ RP +++ P CP+C S++ +E + RC+
Sbjct: 368 GLRIGDRVVIRRAGDVIPQVVNVVIAERPEETREVVFPAHCPVCGSEVERVEGESVTRCT 427
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++ L LD
Sbjct: 428 GGLI-CGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVSTPADLFRLTAGKLTGLD 486
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+ K A N++ A++K+K TT +RF+YALGIR VGE TA LAN+F L+ + A E L
Sbjct: 487 RMGPKSAQNVVDALEKAKSTTLARFLYALGIREVGEATAANLANHFGELQKVMDADLEAL 546
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW---------------------- 594
+ +P +G F+ + +R +I QL ++GI+W
Sbjct: 547 IAVPDVGKVVATHVRNFMEEESNREVIRQLTEEIGIHWPQVVVVKAEEIDSPFAGKTVVL 606
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+N + K G KV +SK T+ L+ G+ G KL KA +L I+++DE
Sbjct: 607 TGSLSQMNRDDAKAQLVALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEM 666
Query: 643 VKIV 646
++++
Sbjct: 667 IRLL 670
>gi|170767420|ref|ZP_02901873.1| DNA ligase, NAD-dependent [Escherichia albertii TW07627]
gi|170123754|gb|EDS92685.1| DNA ligase, NAD-dependent [Escherichia albertii TW07627]
Length = 671
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 267/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 KLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + ++ +++ FY+K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KEWGLPVSDRVTLCESAEEVLAFYRKVEEDRPTLGFDIDGVVIKVNSLAQQEELGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTYVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATATGLAAYFGTLETLEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLIELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|251793989|ref|YP_003008721.1| NAD-dependent DNA ligase LigA [Aggregatibacter aphrophilus NJ8700]
gi|422337061|ref|ZP_16418033.1| DNA ligase [Aggregatibacter aphrophilus F0387]
gi|247535388|gb|ACS98634.1| DNA ligase, NAD-dependent [Aggregatibacter aphrophilus NJ8700]
gi|353345613|gb|EHB89904.1| DNA ligase [Aggregatibacter aphrophilus F0387]
Length = 671
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 273/665 (41%), Positives = 394/665 (59%), Gaps = 34/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+K L H Y++ D P I D++YD+L +LK +E+++P L+T DS TQ VG
Sbjct: 8 QIDDLRKTLRYHEYQYHVLDEPQIPDSEYDRLFHQLKALEQQHPALITADSPTQRVGARP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-KNIEYIAELKFDGIAVNLRY 135
+ H M+SLDN FSDE+ + F KRI + L + + + E K DG+AV++ Y
Sbjct: 68 LSEFAQIKHELPMLSLDNAFSDEEFLAFVKRIQDRLVFAPEPLTFCCEPKLDGLAVSILY 127
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
G L QA+TRGDG GE+IT NI I IPL L PP LEVR EV + F +LN
Sbjct: 128 VNGVLTQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPHDGFERLN 187
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
+ G K F NPRNAAAG LRQL+PKI + L F A+ +G + +++P +H E L W
Sbjct: 188 ERALEQGEKTFANPRNAAAGSLRQLDPKITSQRPLVFNAYSIGVAQRIDLPPTHFERLQW 247
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ IG+ + E + G+ ++ FY+ + KR +L Y+IDG V K+N + Q++LGF S+
Sbjct: 248 LKSIGVPVNSEIRLCDGIENVLNFYRTMMEKRSSLGYDIDGTVLKVNDIELQQRLGFISK 307
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI
Sbjct: 308 APRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLQPVFVAGVTVSNATLHNGDEIE 367
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
R NI IGDTV++ R+G+VIP+I + RP +++ P CP+C+S I+ IE +AR
Sbjct: 368 RLNIAIGDTVIIRRAGDVIPQIIGVVHDRRPANARQIVFPTHCPVCDSLIVRIEGEAVAR 427
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G C AQRK L+HF SRKAMNI G+G K+IE+LV+ +V T DL+K++ + R
Sbjct: 428 CTGGLF-CAAQRKEALKHFVSRKAMNIDGVGAKLIEQLVDRELVHTPADLFKLDLTTITR 486
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L+R+ K A N L +++K+K TT +RFI+ALGIR VGE A LAN+FK LE + A E
Sbjct: 487 LERMGPKSAENALASLEKAKHTTLARFIFALGIRDVGEAIALNLANHFKTLEALQNADLE 546
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--------NP--------- 598
QL +P +G F + + +++ L G++W NP
Sbjct: 547 QLQQVPDVGEVVANRIFVFWREEHNVAVVNDLIAQGVHWETVEVQEVKENPFKDKTVVLT 606
Query: 599 ---------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +S T+Y++ G+ G KL KA +L +++L E+ F
Sbjct: 607 GTLSQMGRNDAKVLLQQLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFW 666
Query: 644 KIVKG 648
V G
Sbjct: 667 AWVNG 671
>gi|386625106|ref|YP_006144834.1| DNA ligase, NAD(+)-dependent [Escherichia coli O7:K1 str. CE10]
gi|349738843|gb|AEQ13549.1| DNA ligase, NAD(+)-dependent [Escherichia coli O7:K1 str. CE10]
Length = 671
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 269/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRSIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV KIN L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKINSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|366160228|ref|ZP_09460090.1| NAD-dependent DNA ligase LigA [Escherichia sp. TW09308]
gi|432373057|ref|ZP_19616096.1| DNA ligase [Escherichia coli KTE11]
gi|430895479|gb|ELC17742.1| DNA ligase [Escherichia coli KTE11]
Length = 671
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTVLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CAAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATASGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|254360665|ref|ZP_04976814.1| DNA ligase (NAD(+)) [Mannheimia haemolytica PHL213]
gi|153091205|gb|EDN73210.1| DNA ligase (NAD(+)) [Mannheimia haemolytica PHL213]
Length = 685
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 273/669 (40%), Positives = 410/669 (61%), Gaps = 35/669 (5%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
+L ++ +++ L ++ Y++ DNP + D +YD+L+ ELK +E ++PEL++ DS TQ V
Sbjct: 17 ELVEKIETIRQTLRQYEYEYHVLDNPSVPDAEYDRLMNELKNLEWQHPELISADSPTQRV 76
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN-IEYIAELKFDGIAV 131
G V H M+SLDN FSDED+ F +R+ + + + + +E+ E K DG+AV
Sbjct: 77 GAKPLAGFAQVTHEIPMLSLDNAFSDEDLDGFLRRMESYITASPSQLEFCCEPKLDGLAV 136
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
++ YE G L +A+TRGDG GE IT NI I IPL LN PP LEVR EV + + F
Sbjct: 137 SILYENGILTRAATRGDGTTGEEITANIRTIRNIPLKLNTTNPPARLEVRGEVFMPQSGF 196
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHS 250
+LN+ G K F NPRNAAAG LRQL+PKI + + L A+G+G + +P++H
Sbjct: 197 NELNEKALAKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGVYESDDELPATHF 256
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
E L W + +G+ + E ++ G L+ +Y +I KR L Y+IDG V K+N ++ Q++L
Sbjct: 257 ERLQWLKSLGIPVNNEIRLVQGKAALLAYYAEIQAKRPTLGYDIDGTVLKVNDIALQEQL 316
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF SR+ R+A+AYKF ++E +T +K + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 317 GFISRSSRWAIAYKFPAQEEMTILKEVGFQVGRTGAITPVAKLEPVFVAGVTVSNATLHN 376
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R I IGDTV++ R+G+VIP+IT +L RP ++K + P CPIC+S + +E
Sbjct: 377 GDEIERLGIVIGDTVIIRRAGDVIPQITGVMLERRPENAKKIEFPTACPICHSAVTRVEG 436
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+G C AQRK L+HF SRKAM+I G+G+K+IE+L+ ++ T DL+K++
Sbjct: 437 EAVARCTGGLF-CEAQRKEALKHFVSRKAMDIDGVGEKLIEQLMARELIETPADLFKLDH 495
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L+RL+R+ K A N L +I+K+K TT RF+++LGIR VGE TA LAN+F +LE +
Sbjct: 496 TTLMRLERMGEKSAQNALNSIEKAKNTTLPRFLFSLGIREVGEATALNLANHFGSLEAIR 555
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------LNNP---- 598
+AT EQL + +G + F +P + ++ L G+ W ++NP
Sbjct: 556 QATFEQLKEVQDVGEVVANRIVSFWQEPHNVEVVEDLIAQGVRWENVVKAEIVDNPLKDK 615
Query: 599 --------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
+ G KV +S T+YL+ G+K G KL KA +L I+IL
Sbjct: 616 NVVLTGTLTQLTRDEAKALLQSLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGIQILS 675
Query: 639 EKNFVKIVK 647
E+ F+++ +
Sbjct: 676 EQQFIELTQ 684
>gi|336246576|ref|YP_004590286.1| NAD-dependent DNA ligase LigA [Enterobacter aerogenes KCTC 2190]
gi|444350243|ref|YP_007386387.1| DNA ligase (EC 6.5.1.2) [Enterobacter aerogenes EA1509E]
gi|334732632|gb|AEG95007.1| NAD-dependent DNA ligase LigA [Enterobacter aerogenes KCTC 2190]
gi|443901073|emb|CCG28847.1| DNA ligase (EC 6.5.1.2) [Enterobacter aerogenes EA1509E]
Length = 671
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 263/664 (39%), Positives = 404/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E ++PEL+T DS TQ VG
Sbjct: 7 KLTELRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELEAQHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + H M+SLDN F +E + FNKR+ + L T ++ + ELK DG+AV++ YE
Sbjct: 67 LASFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLSDTADLTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE+IT+N+ I IPL L P LEVR EV + + F K+N+
Sbjct: 127 NGVLMQAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SHS L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHSARLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + + +++ +Y+++ R L ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KQWGLPVSDRVKLCHSPEEVLTYYRQVEEDRPKLGFDIDGVVIKVDSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T + + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVNDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP ++ P CP+C+S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEHTREIIFPTHCPVCHSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL++++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLSAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F +E + +A+ E+
Sbjct: 486 DRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTIEALEQASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I+QLR G+ W
Sbjct: 546 LQKVPDVGIVVATHTFNFFAEESNREVIAQLRAEGVRWPAPVVVKAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 MRLL 669
>gi|331653837|ref|ZP_08354838.1| DNA ligase, NAD-dependent [Escherichia coli M718]
gi|331048686|gb|EGI20762.1| DNA ligase, NAD-dependent [Escherichia coli M718]
Length = 671
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++KSK TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKSKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVYNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|331673883|ref|ZP_08374646.1| DNA ligase, NAD-dependent [Escherichia coli TA280]
gi|331069156|gb|EGI40548.1| DNA ligase, NAD-dependent [Escherichia coli TA280]
Length = 671
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPTPVVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|26248787|ref|NP_754827.1| NAD-dependent DNA ligase LigA [Escherichia coli CFT073]
gi|170680446|ref|YP_001744602.1| NAD-dependent DNA ligase LigA [Escherichia coli SMS-3-5]
gi|227887457|ref|ZP_04005262.1| NAD-dependent DNA ligase LigA [Escherichia coli 83972]
gi|300981618|ref|ZP_07175608.1| DNA ligase, NAD-dependent [Escherichia coli MS 45-1]
gi|301046300|ref|ZP_07193464.1| DNA ligase, NAD-dependent [Escherichia coli MS 185-1]
gi|386630196|ref|YP_006149916.1| NAD-dependent DNA ligase LigA [Escherichia coli str. 'clone D i2']
gi|386635116|ref|YP_006154835.1| NAD-dependent DNA ligase LigA [Escherichia coli str. 'clone D i14']
gi|386639961|ref|YP_006106759.1| DNA ligase [Escherichia coli ABU 83972]
gi|422363794|ref|ZP_16444328.1| DNA ligase, NAD-dependent [Escherichia coli MS 153-1]
gi|422780690|ref|ZP_16833475.1| DNA ligase [Escherichia coli TW10509]
gi|432432678|ref|ZP_19675105.1| DNA ligase [Escherichia coli KTE187]
gi|432437160|ref|ZP_19679548.1| DNA ligase [Escherichia coli KTE188]
gi|432457500|ref|ZP_19699682.1| DNA ligase [Escherichia coli KTE201]
gi|432496496|ref|ZP_19738292.1| DNA ligase [Escherichia coli KTE214]
gi|432505237|ref|ZP_19746960.1| DNA ligase [Escherichia coli KTE220]
gi|432524633|ref|ZP_19761760.1| DNA ligase [Escherichia coli KTE230]
gi|432569471|ref|ZP_19805981.1| DNA ligase [Escherichia coli KTE53]
gi|432593655|ref|ZP_19829970.1| DNA ligase [Escherichia coli KTE60]
gi|432608323|ref|ZP_19844507.1| DNA ligase [Escherichia coli KTE67]
gi|432651963|ref|ZP_19887716.1| DNA ligase [Escherichia coli KTE87]
gi|432784354|ref|ZP_20018533.1| DNA ligase [Escherichia coli KTE63]
gi|432845391|ref|ZP_20078191.1| DNA ligase [Escherichia coli KTE141]
gi|432895402|ref|ZP_20107122.1| DNA ligase [Escherichia coli KTE165]
gi|432974539|ref|ZP_20163376.1| DNA ligase [Escherichia coli KTE209]
gi|432996145|ref|ZP_20184731.1| DNA ligase [Escherichia coli KTE218]
gi|433000713|ref|ZP_20189237.1| DNA ligase [Escherichia coli KTE223]
gi|433058914|ref|ZP_20245957.1| DNA ligase [Escherichia coli KTE124]
gi|433088069|ref|ZP_20274440.1| DNA ligase [Escherichia coli KTE137]
gi|433116328|ref|ZP_20302117.1| DNA ligase [Escherichia coli KTE153]
gi|433125995|ref|ZP_20311551.1| DNA ligase [Escherichia coli KTE160]
gi|433140063|ref|ZP_20325317.1| DNA ligase [Escherichia coli KTE167]
gi|433149980|ref|ZP_20334999.1| DNA ligase [Escherichia coli KTE174]
gi|433208562|ref|ZP_20392236.1| DNA ligase [Escherichia coli KTE97]
gi|433213345|ref|ZP_20396935.1| DNA ligase [Escherichia coli KTE99]
gi|442608172|ref|ZP_21022932.1| DNA ligase [Escherichia coli Nissle 1917]
gi|81475373|sp|Q8FFC1.1|DNLJ_ECOL6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|254781328|sp|B1LMK5.1|DNLJ_ECOSM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|26109193|gb|AAN81395.1|AE016764_77 DNA ligase [Escherichia coli CFT073]
gi|170518164|gb|ACB16342.1| DNA ligase, NAD-dependent [Escherichia coli SMS-3-5]
gi|227835807|gb|EEJ46273.1| NAD-dependent DNA ligase LigA [Escherichia coli 83972]
gi|300301715|gb|EFJ58100.1| DNA ligase, NAD-dependent [Escherichia coli MS 185-1]
gi|300408962|gb|EFJ92500.1| DNA ligase, NAD-dependent [Escherichia coli MS 45-1]
gi|307554453|gb|ADN47228.1| DNA ligase [Escherichia coli ABU 83972]
gi|315293473|gb|EFU52825.1| DNA ligase, NAD-dependent [Escherichia coli MS 153-1]
gi|323977408|gb|EGB72494.1| DNA ligase [Escherichia coli TW10509]
gi|355421095|gb|AER85292.1| NAD-dependent DNA ligase LigA [Escherichia coli str. 'clone D i2']
gi|355426015|gb|AER90211.1| NAD-dependent DNA ligase LigA [Escherichia coli str. 'clone D i14']
gi|430952046|gb|ELC71253.1| DNA ligase [Escherichia coli KTE187]
gi|430962491|gb|ELC80348.1| DNA ligase [Escherichia coli KTE188]
gi|430981507|gb|ELC98234.1| DNA ligase [Escherichia coli KTE201]
gi|431023754|gb|ELD36949.1| DNA ligase [Escherichia coli KTE214]
gi|431037587|gb|ELD48563.1| DNA ligase [Escherichia coli KTE220]
gi|431051084|gb|ELD60759.1| DNA ligase [Escherichia coli KTE230]
gi|431098961|gb|ELE04262.1| DNA ligase [Escherichia coli KTE53]
gi|431126983|gb|ELE29298.1| DNA ligase [Escherichia coli KTE60]
gi|431137267|gb|ELE39114.1| DNA ligase [Escherichia coli KTE67]
gi|431189818|gb|ELE89235.1| DNA ligase [Escherichia coli KTE87]
gi|431328777|gb|ELG16081.1| DNA ligase [Escherichia coli KTE63]
gi|431394247|gb|ELG77783.1| DNA ligase [Escherichia coli KTE141]
gi|431421769|gb|ELH03981.1| DNA ligase [Escherichia coli KTE165]
gi|431488271|gb|ELH67906.1| DNA ligase [Escherichia coli KTE209]
gi|431505175|gb|ELH83797.1| DNA ligase [Escherichia coli KTE218]
gi|431508105|gb|ELH86379.1| DNA ligase [Escherichia coli KTE223]
gi|431568447|gb|ELI41420.1| DNA ligase [Escherichia coli KTE124]
gi|431604580|gb|ELI73989.1| DNA ligase [Escherichia coli KTE137]
gi|431633149|gb|ELJ01430.1| DNA ligase [Escherichia coli KTE153]
gi|431643849|gb|ELJ11538.1| DNA ligase [Escherichia coli KTE160]
gi|431659270|gb|ELJ26166.1| DNA ligase [Escherichia coli KTE167]
gi|431669954|gb|ELJ36314.1| DNA ligase [Escherichia coli KTE174]
gi|431729847|gb|ELJ93466.1| DNA ligase [Escherichia coli KTE97]
gi|431734370|gb|ELJ97771.1| DNA ligase [Escherichia coli KTE99]
gi|441710777|emb|CCQ08909.1| DNA ligase [Escherichia coli Nissle 1917]
Length = 671
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|416898552|ref|ZP_11928098.1| DNA ligase, NAD-dependent [Escherichia coli STEC_7v]
gi|417115330|ref|ZP_11966466.1| DNA ligase (NAD+) [Escherichia coli 1.2741]
gi|422799709|ref|ZP_16848208.1| DNA ligase [Escherichia coli M863]
gi|323967844|gb|EGB63256.1| DNA ligase [Escherichia coli M863]
gi|327252066|gb|EGE63738.1| DNA ligase, NAD-dependent [Escherichia coli STEC_7v]
gi|386140749|gb|EIG81901.1| DNA ligase (NAD+) [Escherichia coli 1.2741]
Length = 671
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|293410811|ref|ZP_06654387.1| DNA ligase [Escherichia coli B354]
gi|432603001|ref|ZP_19839245.1| DNA ligase [Escherichia coli KTE66]
gi|291471279|gb|EFF13763.1| DNA ligase [Escherichia coli B354]
gi|431141575|gb|ELE43340.1| DNA ligase [Escherichia coli KTE66]
Length = 671
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|293415682|ref|ZP_06658325.1| DNA ligase [Escherichia coli B185]
gi|417629713|ref|ZP_12279950.1| DNA ligase, NAD-dependent [Escherichia coli STEC_MHI813]
gi|422836361|ref|ZP_16884407.1| DNA ligase [Escherichia coli E101]
gi|432450548|ref|ZP_19692810.1| DNA ligase [Escherichia coli KTE193]
gi|432852024|ref|ZP_20082066.1| DNA ligase [Escherichia coli KTE144]
gi|433034242|ref|ZP_20221951.1| DNA ligase [Escherichia coli KTE112]
gi|291433330|gb|EFF06309.1| DNA ligase [Escherichia coli B185]
gi|345372460|gb|EGX04424.1| DNA ligase, NAD-dependent [Escherichia coli STEC_MHI813]
gi|371609084|gb|EHN97627.1| DNA ligase [Escherichia coli E101]
gi|430979040|gb|ELC95826.1| DNA ligase [Escherichia coli KTE193]
gi|431399280|gb|ELG82687.1| DNA ligase [Escherichia coli KTE144]
gi|431549634|gb|ELI23710.1| DNA ligase [Escherichia coli KTE112]
Length = 671
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|386390478|ref|ZP_10075267.1| DNA ligase (NAD+) [Haemophilus paraphrohaemolyticus HK411]
gi|385693203|gb|EIG23858.1| DNA ligase (NAD+) [Haemophilus paraphrohaemolyticus HK411]
Length = 699
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 273/662 (41%), Positives = 406/662 (61%), Gaps = 35/662 (5%)
Query: 20 ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGEN 79
+L++ L ++ Y++ DNP++ D +YD+L+ ELK IE+ +PE +T DS TQ VG
Sbjct: 39 QLRQTLRKYEYHYHVLDNPLVPDAEYDRLMNELKAIEKAHPEFITADSPTQRVGAKPLSG 98
Query: 80 SKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVNLRYEYG 138
+ H M+SLDN FS+++++ F +RI ++ + + IE+ E K DG+AV++ Y G
Sbjct: 99 FTQITHELPMLSLDNAFSNDELLGFLRRIEGQIHRNPETIEFCCEPKLDGLAVSILYVNG 158
Query: 139 YLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYR 198
L QA+TRGDG GE+IT N+ I +PL LN PP LEVR EV + +K F LN+
Sbjct: 159 VLTQAATRGDGTTGEDITANVRTIRNVPLRLNTDNPPARLEVRGEVFMPQKGFNALNERA 218
Query: 199 YHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHSELLNWYQ 257
G K F NPRNAAAG LRQL+PKI + L A+G+G +P++H + L W +
Sbjct: 219 LEHGEKTFANPRNAAAGSLRQLDPKITAQRPLTLNAYGIGIYEAEQPLPNTHFDRLQWLK 278
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
IG+ + E + GV +L EFY I KR NL Y+IDG V K+N ++ Q++LGF SR+P
Sbjct: 279 SIGIPVNNEICLAKGVEQLAEFYTDIQTKRPNLGYDIDGTVLKVNDIALQEQLGFISRSP 338
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 339 RWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIDRL 398
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
I IGDTV++ R+G+VIP+I + RP ++K P CP+C S ++ ++ +ARC+
Sbjct: 399 GIAIGDTVIIRRAGDVIPQIIGVVTERRPTNAKKIVFPTACPVCESAVVRVDGEAVARCT 458
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G C AQRK L+HF SRKAM+I G+G+K+IE+L+ + ++ T DL+K+N L+RL+
Sbjct: 459 GGLF-CEAQRKEALKHFVSRKAMDIEGVGEKLIEQLMASELIKTPADLFKLNKTILMRLE 517
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+ K A N+L +++K+K TT RF++ALGIR VGE+TA LAN+F LE + AT EQL
Sbjct: 518 RMGEKSAQNVLNSLEKAKQTTLPRFLFALGIRDVGESTALNLANHFGTLEAIQVATFEQL 577
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------LNNP----------- 598
+ +G + F +P + ++ L+ GI+W +NP
Sbjct: 578 QAVQDVGEVVANRIVSFWKEPHNVAVVEDLQAQGIHWQTVEKVEIADNPLKDKNVVLTGT 637
Query: 599 -------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
G KV + +S T+YL+ G+K G KL KA +L +K+L E+ F+ +
Sbjct: 638 LSQLTRDQAKALLQGLGCKVSSSVSSKTDYLIAGEKAGSKLTKAQELGVKVLSEQEFIDL 697
Query: 646 VK 647
+K
Sbjct: 698 MK 699
>gi|84393803|ref|ZP_00992550.1| DNA ligase [Vibrio splendidus 12B01]
gi|84375600|gb|EAP92500.1| DNA ligase [Vibrio splendidus 12B01]
Length = 670
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 277/669 (41%), Positives = 402/669 (60%), Gaps = 36/669 (5%)
Query: 13 KLSFRVT--ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
K S +VT +L++ LH H + YY+ D+P I D +YD+L+ +L KIEE+ PEL+T DS +Q
Sbjct: 2 KESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEEENPELVTVDSPSQ 61
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + V H M+SLDN FSDED+ FNKR+++ + + E K DG+A
Sbjct: 62 RVGGQPLDGFTQVTHEIPMLSLDNAFSDEDLDAFNKRMSDRAPMANLKTFCCEPKLDGLA 121
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L Y G L QA+TRGDG GENIT N+ I IPL L + PE +EVR EV + K
Sbjct: 122 VSLLYVNGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVFMPKAG 181
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F KLN+ G K F NPRNAAAG LRQL+ +I + L F+A+ VG ++G + +SH
Sbjct: 182 FDKLNEMALKKGDKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVQGAELSNSHY 241
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL +C E LS + + +Y+ I +R L YEIDGVV K++ ++ Q L
Sbjct: 242 QRFLQLKGWGLPMCPETKQLSSLEDVKAYYQDIMTRRDALAYEIDGVVIKVDDIAAQVTL 301
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+P+ + G+T++ ATLHN
Sbjct: 302 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHN 361
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R +++GD+V++ R+G+VIP+I + +L RP ++ P+ CP+CNS + +E
Sbjct: 362 ADEIARLGVKVGDSVIIRRAGDVIPQIVAVVLDRRPETARDIVFPDACPVCNSAVERVEG 421
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++
Sbjct: 422 EAVARCTGGLV-CQAQRKEALKHFVSRKALDVDGLGVKVIEQLVDREMVETPADLFKLSA 480
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
+ LDR+ K A N++ A+ K+K TT +RF+Y+LGIR VGE TA LA +FK LE +
Sbjct: 481 GVITVLDRMGPKSAQNVVSALNKAKDTTLARFLYSLGIREVGEATAMNLAQHFKTLELVQ 540
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
AT EQL+ + IG F +Q +R ++ QL ++G+ W
Sbjct: 541 AATHEQLVEVSDIGDIVASHLTSFFSQEKNRAVVEQLLELGVNWPTIEAVADDQELPLEG 600
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L K G KV +SK T+ L G+ G KL KA L I+I
Sbjct: 601 KVVVLTGSLSKLGRSEAKAALQALGAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIR 660
Query: 638 DEKNFVKIV 646
E++ + ++
Sbjct: 661 TEEDLIALI 669
>gi|432392906|ref|ZP_19635736.1| DNA ligase [Escherichia coli KTE21]
gi|430918062|gb|ELC39101.1| DNA ligase [Escherichia coli KTE21]
Length = 671
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLTQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIIINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|218548148|ref|YP_002381939.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ATCC 35469]
gi|331684067|ref|ZP_08384663.1| DNA ligase, NAD-dependent [Escherichia coli H299]
gi|422370022|ref|ZP_16450416.1| DNA ligase, NAD-dependent [Escherichia coli MS 16-3]
gi|432899403|ref|ZP_20110095.1| DNA ligase [Escherichia coli KTE192]
gi|433029366|ref|ZP_20217223.1| DNA ligase [Escherichia coli KTE109]
gi|450191307|ref|ZP_21891116.1| NAD-dependent DNA ligase LigA [Escherichia coli SEPT362]
gi|254781331|sp|B7LL73.1|DNLJ_ESCF3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|218355689|emb|CAQ88301.1| DNA ligase, NAD(+)-dependent [Escherichia fergusonii ATCC 35469]
gi|315298233|gb|EFU57493.1| DNA ligase, NAD-dependent [Escherichia coli MS 16-3]
gi|331079019|gb|EGI50221.1| DNA ligase, NAD-dependent [Escherichia coli H299]
gi|431427055|gb|ELH09099.1| DNA ligase [Escherichia coli KTE192]
gi|431542587|gb|ELI17752.1| DNA ligase [Escherichia coli KTE109]
gi|449319454|gb|EMD09503.1| NAD-dependent DNA ligase LigA [Escherichia coli SEPT362]
Length = 671
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|183179445|ref|ZP_02957656.1| DNA ligase [Vibrio cholerae MZO-3]
gi|417820395|ref|ZP_12467009.1| DNA ligase, NAD-dependent [Vibrio cholerae HE39]
gi|417824076|ref|ZP_12470667.1| DNA ligase, NAD-dependent [Vibrio cholerae HE48]
gi|421350751|ref|ZP_15801116.1| DNA ligase, NAD-dependent [Vibrio cholerae HE-25]
gi|423951853|ref|ZP_17733871.1| DNA ligase, NAD-dependent [Vibrio cholerae HE-40]
gi|423979123|ref|ZP_17737420.1| DNA ligase, NAD-dependent [Vibrio cholerae HE-46]
gi|183012856|gb|EDT88156.1| DNA ligase [Vibrio cholerae MZO-3]
gi|340038026|gb|EGQ99000.1| DNA ligase, NAD-dependent [Vibrio cholerae HE39]
gi|340047761|gb|EGR08684.1| DNA ligase, NAD-dependent [Vibrio cholerae HE48]
gi|395951196|gb|EJH61810.1| DNA ligase, NAD-dependent [Vibrio cholerae HE-25]
gi|408660623|gb|EKL31633.1| DNA ligase, NAD-dependent [Vibrio cholerae HE-40]
gi|408665728|gb|EKL36538.1| DNA ligase, NAD-dependent [Vibrio cholerae HE-46]
Length = 669
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 274/670 (40%), Positives = 402/670 (60%), Gaps = 34/670 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S ++ R+TEL+K LH H + YY+ D P I D +YD+L+ EL ++E +PEL++ DS +
Sbjct: 1 MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + V H M+SLDN F D ++ F +R+T+ + ++ + E K DG+A
Sbjct: 61 RVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL IC E +++ + ++ FY+ I +R +L YEIDGVV K++ + Q++L
Sbjct: 241 QRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTVV+ R+G+VIP+I S +L RP ++K P CP+C S + +E
Sbjct: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARCSG I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 421 EAVARCSGGLI-CQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ A+ K+K TT +F+YALGIR VGE TA LA +F +LE +
Sbjct: 480 GELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQ 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+ EQ + +P +G F Q ++ +I++L + GI W
Sbjct: 540 QASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAG 599
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L+ + K G KV +SKNT+ + G+ G KL KA +L I++
Sbjct: 600 KIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVF 659
Query: 638 DEKNFVKIVK 647
DE+ ++ +K
Sbjct: 660 DEQALIEFLK 669
>gi|417603067|ref|ZP_12253637.1| DNA ligase, NAD-dependent [Escherichia coli STEC_94C]
gi|345350733|gb|EGW83008.1| DNA ligase, NAD-dependent [Escherichia coli STEC_94C]
Length = 671
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG+ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGVITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|331648073|ref|ZP_08349163.1| DNA ligase, NAD-dependent [Escherichia coli M605]
gi|331042933|gb|EGI15073.1| DNA ligase, NAD-dependent [Escherichia coli M605]
Length = 671
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIIINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|290476106|ref|YP_003469005.1| DNA ligase [Xenorhabdus bovienii SS-2004]
gi|289175438|emb|CBJ82241.1| DNA ligase [Xenorhabdus bovienii SS-2004]
Length = 672
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 272/665 (40%), Positives = 399/665 (60%), Gaps = 36/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P I D +YD+LL ELK +EE++PEL+T DS TQ VG
Sbjct: 7 KINKLRATLRHHEYLYHVMDAPEIPDAEYDRLLRELKVLEEQHPELITADSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F +E + F+KR+ + LK ++++ + ELK DG+AV+L YE
Sbjct: 67 LTAFGQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKDSRDLVFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ IH IPL L P +E+R EV + + F KLN
Sbjct: 127 DGELVQAATRGDGTTGENITVNVRTIHAIPLRLKGNNIPARVEIRGEVFMKQGGFEKLND 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L F+ +GVG L G +P+SH E L +
Sbjct: 187 EARRKGNKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGVLEGGELPASHYERLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + + G ++I+FY I +R L ++IDG+V K++ L Q+ LGF ++A
Sbjct: 247 KQWGLPVSDNVKLCQGTQQVIDFYHNIEQQRPILGFDIDGIVIKVDSLELQETLGFVAKA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T ++ + Q+GRTG ITPVA LKPV + G+ ++ ATLHN EI R
Sbjct: 307 PRWATAFKFAAQEQMTIVRDVEFQVGRTGAITPVARLKPVQVAGVIVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTVV+ R+G+VIPK+ + RP +S+ P CP+C S I +E +ARC
Sbjct: 367 LGLRIGDTVVIRRAGDVIPKVVGVVQDKRPAESQEVIFPEYCPVCRSDIERVEGESVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SR+AM++ G+G+K+IE+LV+ V T DL++++ L L
Sbjct: 427 TGGLF-CGAQRKEALKHFVSRRAMDVDGMGEKIIEQLVDKEYVKTPADLFRLSAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N + A++KSK TTF+RFIY+LGIR VGE TA L +F LE + A E
Sbjct: 486 ERMGPKSAQNTIDALEKSKKTTFARFIYSLGIREVGEATAANLVAHFVTLEKLRAADTEA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRD-VGIYW--------------------- 594
L+ + +G + F N+P ++ +I L D +GIYW
Sbjct: 546 LIAVQDVGGVVASHVVNFFNEPHNQTVIDDLIDNIGIYWESVETLQSDTVGNSFAGKTVV 605
Query: 595 -------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
L+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE+
Sbjct: 606 LTGSLNRLSRDEAKDKLTALGAKVTGSVSKKTDLVIAGEAAGSKLAKATELGIEVIDEEE 665
Query: 642 FVKIV 646
++++
Sbjct: 666 MLRLL 670
>gi|424590212|ref|ZP_18029650.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1037(10)]
gi|408035163|gb|EKG71640.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1037(10)]
Length = 669
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 274/670 (40%), Positives = 403/670 (60%), Gaps = 34/670 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S ++ R+TEL+K LH H + YY+ D P I D +YD+L+ EL ++E +PEL++ DS +
Sbjct: 1 MSDVAQRLTELRKTLHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + V H M+SLDN F D ++ F +R+T+ ++ ++ + E K DG+A
Sbjct: 61 RVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIQAVQHSAFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYENGVLTRAATRGDGMTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL IC E +++ + ++ FY+ I +R L YEIDGVV K++ + Q++L
Sbjct: 241 QRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQFLAYEIDGVVIKVDDIQLQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTVV+ R+G+VIP+I S +L RP ++K P CP+C S + +E
Sbjct: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARCSG I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 421 EAVARCSGGLI-CQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ A+ K+K TT +F+YALGIR VGE TA LA +F +LE +
Sbjct: 480 GELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQ 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+ EQ + +P +G + F Q ++ +I++L + GI W
Sbjct: 540 QASLEQFIEVPDVGVVVASHLLAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAG 599
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L+ + K G KV +SKNT+ + G+ G KL KA +L I++
Sbjct: 600 KIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVF 659
Query: 638 DEKNFVKIVK 647
DE+ ++ +K
Sbjct: 660 DEQALIEFLK 669
>gi|301648064|ref|ZP_07247828.1| DNA ligase, NAD-dependent [Escherichia coli MS 146-1]
gi|331643032|ref|ZP_08344167.1| DNA ligase, NAD-dependent [Escherichia coli H736]
gi|432637638|ref|ZP_19873507.1| DNA ligase [Escherichia coli KTE81]
gi|432705192|ref|ZP_19940291.1| DNA ligase [Escherichia coli KTE171]
gi|301073835|gb|EFK88641.1| DNA ligase, NAD-dependent [Escherichia coli MS 146-1]
gi|331039830|gb|EGI12050.1| DNA ligase, NAD-dependent [Escherichia coli H736]
gi|431170378|gb|ELE70571.1| DNA ligase [Escherichia coli KTE81]
gi|431242074|gb|ELF36495.1| DNA ligase [Escherichia coli KTE171]
Length = 671
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 404/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F+NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFSNPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|417708443|ref|ZP_12357476.1| DNA ligase, NAD-dependent [Shigella flexneri VA-6]
gi|417713464|ref|ZP_12362429.1| DNA ligase, NAD-dependent [Shigella flexneri K-272]
gi|417718306|ref|ZP_12367203.1| DNA ligase, NAD-dependent [Shigella flexneri K-227]
gi|420321303|ref|ZP_14823131.1| DNA ligase, NAD-dependent [Shigella flexneri 2850-71]
gi|420332371|ref|ZP_14834026.1| DNA ligase, NAD-dependent [Shigella flexneri K-1770]
gi|333001543|gb|EGK21111.1| DNA ligase, NAD-dependent [Shigella flexneri VA-6]
gi|333002206|gb|EGK21770.1| DNA ligase, NAD-dependent [Shigella flexneri K-272]
gi|333016032|gb|EGK35364.1| DNA ligase, NAD-dependent [Shigella flexneri K-227]
gi|391247374|gb|EIQ06623.1| DNA ligase, NAD-dependent [Shigella flexneri 2850-71]
gi|391250412|gb|EIQ09634.1| DNA ligase, NAD-dependent [Shigella flexneri K-1770]
Length = 671
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 269/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ KLA N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKLAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|432675538|ref|ZP_19910994.1| DNA ligase [Escherichia coli KTE142]
gi|431213345|gb|ELF11219.1| DNA ligase [Escherichia coli KTE142]
Length = 671
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|440231841|ref|YP_007345634.1| DNA ligase, NAD-dependent [Serratia marcescens FGI94]
gi|440053546|gb|AGB83449.1| DNA ligase, NAD-dependent [Serratia marcescens FGI94]
Length = 673
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 267/665 (40%), Positives = 398/665 (59%), Gaps = 37/665 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ +L+ +L H Y++ D P I D +YD+L+ EL+ +EE +PEL+T DS TQ VG
Sbjct: 8 INQLRTQLRHHEYQYHVLDAPEIPDAEYDRLMRELRALEEAHPELITADSPTQRVGAAPL 67
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
V H M+SLDN F DE + F KR+ + LK ++ + + ELK DG+AV+L YE
Sbjct: 68 AAFDQVRHEVPMLSLDNVFDDESFLAFYKRVQDRLKSSEALTFCCELKLDGLAVSLLYED 127
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + + F K+N+
Sbjct: 128 GELVRAATRGDGTTGENITANVRTIRAIPLRLTGDNIPRRLEVRGEVFMPQAGFEKMNEE 187
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SH + L ++
Sbjct: 188 ARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHWQRLMQFK 247
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
GL + + SG ++++ FY+++ R L ++IDGVV KI+ + Q++LGF +RAP
Sbjct: 248 AWGLPVSDRARLCSGSDEVLAFYRQVEQDRGGLGFDIDGVVVKIDDIDLQEQLGFVARAP 307
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A A+KF ++E +T+++ + Q+GRTG ITPVA L+PVL+ G+T++ ATLHN EI R
Sbjct: 308 RWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHNADEIERL 367
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
++IGDTV+V R+G+VIP++ + RP D++ P CP+C S + +E +ARC+
Sbjct: 368 GLRIGDTVIVRRAGDVIPQVVGVVEERRPLDAREVVFPQHCPVCGSDVERVEGEAVARCT 427
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G I C AQRK L+HF SR+A+++ G+G K+IE+LV V DL+ ++ L LD
Sbjct: 428 GGLI-CAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKEYVKDPADLFGLSAGLLTGLD 486
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+ K A N++ A++KSK TTF+RF+YALGIR VGE TA LA +F +L+ + A E L
Sbjct: 487 RMGPKSAQNLVNALEKSKQTTFARFLYALGIREVGEATAANLAAHFGSLDALRAADVEAL 546
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQL--RDVGIYW----------LNNP------- 598
+P +G K + F + L++ +I +L ++GI W +++P
Sbjct: 547 KLVPDVGEVVAKHVVNFFAEALNQQVIDKLVSAEIGISWPAPVVVAAEEIDSPFAGKTVV 606
Query: 599 -----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 607 LTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAE 666
Query: 642 FVKIV 646
++++
Sbjct: 667 MIRLL 671
>gi|15603581|ref|NP_246655.1| NAD-dependent DNA ligase LigA [Pasteurella multocida subsp.
multocida str. Pm70]
gi|81636517|sp|Q9CKA9.1|DNLJ_PASMU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|12722128|gb|AAK03800.1| Lig [Pasteurella multocida subsp. multocida str. Pm70]
Length = 673
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 276/671 (41%), Positives = 396/671 (59%), Gaps = 34/671 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+ + +L++ L H Y++ DNP I D +YD+L LK +E++YP+ + DS TQ
Sbjct: 3 DSIKLEIEQLRQTLRYHEYQYHVLDNPQIPDAEYDRLFHRLKTLEQQYPQWFSPDSPTQR 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-KNIEYIAELKFDGIA 130
VG V H M+SLDN FSDE++ F KRI + L + K +E+ E K DG+A
Sbjct: 63 VGAKPLSAFAQVQHEMPMLSLDNAFSDEELHAFVKRIQDRLVFSPKLLEFCCEPKLDGLA 122
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V++ Y G L QA+TRGDG+ GE+IT NI + IPL L ++ PP LEVR EV + +
Sbjct: 123 VSILYVDGKLTQAATRGDGSTGEDITLNIRTVRNIPLQLLMENPPTRLEVRGEVFMSQAG 182
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN+ G K F NPRNAAAG LRQL+P+I + L A+ +G G+++P +H
Sbjct: 183 FEVLNEKALARGEKTFANPRNAAAGSLRQLDPRITSQRPLLLNAYSIGVAEGIDLPDTHF 242
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
E L W + IG+ + E + G ++ FY+ I KR L Y+IDG V K+N ++ Q++L
Sbjct: 243 ERLQWLKSIGIPVNNEIQLCEGTENVLNFYRAIMQKRSTLGYDIDGTVIKVNDIALQEEL 302
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF S+APR+A+AYKF ++E LT + A+ Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 303 GFISKAPRWAIAYKFPAQEELTVLNAVEFQVGRTGAITPVAKLQPVFVAGVTVSNATLHN 362
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R ++ IGDTV++ R+G+VIP+I + RP +++ P CP+C S I+ IE
Sbjct: 363 GDEIARLDVAIGDTVIIRRAGDVIPQIIGVLHEKRPANAEKIVFPTECPVCGSVIVRIEG 422
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ + T DL+K++
Sbjct: 423 EAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGAKLIEQLVDREQIHTPADLFKLDL 481
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L RL+R+ K A N L ++QK+K TT +RFI+ALGIR VGE TA LAN+FK LE +
Sbjct: 482 NTLARLERMGLKSAQNALDSLQKAKKTTLARFIFALGIREVGEATALNLANHFKTLEALK 541
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL--------NNP---- 598
+AT EQL + +G F +P + ++ L GI+W +NP
Sbjct: 542 EATLEQLQEVQDVGEVVANRIFVFWREPHNVAVVEDLIAQGIHWETVEVKDVGDNPFKEK 601
Query: 599 --------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
G KV +S T+ +V G G KL KA +L +K++D
Sbjct: 602 TVVLTGTLTQMGRTEAKALLQQLGAKVSGSVSAKTDLVVAGDSAGSKLTKANELGVKVID 661
Query: 639 EKNFVKIVKGF 649
E F+ K +
Sbjct: 662 ENTFLAWSKPY 672
>gi|432441891|ref|ZP_19684231.1| DNA ligase [Escherichia coli KTE189]
gi|432446997|ref|ZP_19689296.1| DNA ligase [Escherichia coli KTE191]
gi|433014707|ref|ZP_20203049.1| DNA ligase [Escherichia coli KTE104]
gi|433024279|ref|ZP_20212260.1| DNA ligase [Escherichia coli KTE106]
gi|433323861|ref|ZP_20401192.1| NAD-dependent DNA ligase LigA [Escherichia coli J96]
gi|430966345|gb|ELC83753.1| DNA ligase [Escherichia coli KTE189]
gi|430973270|gb|ELC90238.1| DNA ligase [Escherichia coli KTE191]
gi|431529693|gb|ELI06388.1| DNA ligase [Escherichia coli KTE104]
gi|431534340|gb|ELI10823.1| DNA ligase [Escherichia coli KTE106]
gi|432347959|gb|ELL42416.1| NAD-dependent DNA ligase LigA [Escherichia coli J96]
Length = 671
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 267/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALG+R VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGVREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|146615|gb|AAA24071.1| lig peptide [Escherichia coli]
Length = 671
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LARFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|229843861|ref|ZP_04464002.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 6P18H1]
gi|229812855|gb|EEP48543.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 6P18H1]
Length = 670
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 278/666 (41%), Positives = 400/666 (60%), Gaps = 34/666 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++ L+K L ++ Y++ DNP + D++YD+L +LK +E ++PE LT DS TQ
Sbjct: 1 MTNIQTKINNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGI 129
VG +HH M+SLDN FSD + F KRI + L L K + + E K DG+
Sbjct: 61 RVGAKPLSGFSQIHHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLPKPLTFCCEPKLDGL 120
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G L QA+TRGDG IGE+IT NI I IPL L PP LEVR EV +
Sbjct: 121 AVSILYINGVLTQAATRGDGTIGEDITANIRTIRNIPLQLLTDNPPARLEVRGEVFMPHA 180
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LNKY K F NPRNAAAG LRQL+P I + L A+G+G G+++P++H
Sbjct: 181 GFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDLPTTH 240
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
L W + IG+ + E + +G ++++ FY+ I KR +L Y+IDG V KIN ++ Q +
Sbjct: 241 YARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIALQNE 300
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF S+APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 301 LGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 360
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R NI IGDTVV+ R+G+VIP+I + RP+++K P CP+C+S+II IE
Sbjct: 361 NGDEIERLNIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIE 420
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++
Sbjct: 421 GEAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLD 479
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L RL+R+ K A N L +++K+K TT +RFI+ALGIR VGE TA LAN+FK L+ +
Sbjct: 480 LTTLTRLERMGVKSAENALNSLEKAKSTTLARFIFALGIREVGEATALNLANHFKTLDAL 539
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
+A +QL +P +G F + + ++ L G++W
Sbjct: 540 KEADLDQLQQVPDVGEVVANRIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKD 599
Query: 595 ----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L T+ G KV +S T++++ G G KL KA +LNI +L
Sbjct: 600 KTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLVKAQELNITVL 659
Query: 638 DEKNFV 643
E+ F+
Sbjct: 660 TEEEFL 665
>gi|388456827|ref|ZP_10139122.1| DNA ligase [Fluoribacter dumoffii Tex-KL]
Length = 673
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 269/673 (39%), Positives = 407/673 (60%), Gaps = 35/673 (5%)
Query: 9 INFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSL 68
++ ++ + ELK+++ +++ YY+ D PI+ D +YD+ L+ +E KYPELLT DS
Sbjct: 1 MSIDEIKGTIAELKEKIRQYDYHYYVLDEPIVPDVEYDRCFRALQDLEAKYPELLTADSP 60
Query: 69 TQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFD 127
TQ V + V H M+SL N F++E++ F KR+T +L + + + + E K D
Sbjct: 61 TQRVSGTPADAFMPVTHRQPMLSLSNVFTEEELKAFIKRVTEKLDEPVQQLVFTCEPKLD 120
Query: 128 GIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIY 187
G+AVNL YE G L A+TRGDG+ GENIT NI I IPLVL +K PP +E+R EV +
Sbjct: 121 GLAVNLTYEGGLLVTAATRGDGSTGENITANIKTIPAIPLVLRVKTPPRFIEIRGEVYMP 180
Query: 188 KKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPS 247
K F + NK G K F NPRNAAAG LRQLNP + ++ L + +G+G G +P
Sbjct: 181 KAGFEEYNKKAKESGEKTFANPRNAAAGSLRQLNPSVTASRPLAIYCYGIGACDGYTLPE 240
Query: 248 SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQ 307
+H E L +K+G + + G+ + +Y ++ KR LP+E+DGVVYK++ + Q
Sbjct: 241 THWEQLQLLKKLGFRVSSDIQRQEGMQGCLNYYHEMLAKRDQLPFEVDGVVYKVDSIPLQ 300
Query: 308 KKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRAT 367
K+LG+ SRAPRFA A+KF + E +T++ A++ Q+GRTG +TPVA L PV + G+T++ AT
Sbjct: 301 KQLGYISRAPRFACAHKFPATEEMTELLAVDFQVGRTGALTPVARLAPVNVAGVTVSNAT 360
Query: 368 LHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIY 427
LHN EI RK+I+IGD V++ R+G+VIP++ S + RP ++ +P CP+C S ++
Sbjct: 361 LHNMDEIARKDIRIGDKVIIRRAGDVIPEVVSVVQEQRPPHTREIHLPETCPVCGSDVVR 420
Query: 428 IESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYK 487
E +ARC G C AQ K + HF+SRKAM I GLG +IE+LV+ ++ DLY
Sbjct: 421 EEGEAVARCVGGLF-CKAQLKRMMWHFASRKAMYIEGLGSVLIEQLVDEGLIHHLPDLYT 479
Query: 488 INFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLE 547
++ L L R+ K A N++ A+++SK TTFSRF+YALGI +GET+A+ LA +F ++E
Sbjct: 480 LDVPTLASLPRMGEKSAKNLVYALEQSKNTTFSRFLYALGIPEIGETSARMLAEHFGDIE 539
Query: 548 CMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------- 594
+ +ATEE+L+++ +G + F QP +R +I +L +G++W
Sbjct: 540 GISQATEEELMSLQDMGPVGAFNVVHFFAQPHNREVIERLLALGVHWQKVEKKQVSREHP 599
Query: 595 -----------LN---------NPNTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNI 634
LN N G KV +S T+Y+V G + G KL+KA L I
Sbjct: 600 LFGKTVVLTGTLNTMGREEAKANLLAAGAKVTGSVSAKTDYVVAGSEAGSKLDKANDLGI 659
Query: 635 KILDEKNFVKIVK 647
+LDE+ F+++++
Sbjct: 660 TVLDEEQFLQLLR 672
>gi|417662986|ref|ZP_12312567.1| DNA ligase [Escherichia coli AA86]
gi|330912204|gb|EGH40714.1| DNA ligase [Escherichia coli AA86]
Length = 671
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIIINVEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|254226208|ref|ZP_04919802.1| DNA ligase [Vibrio cholerae V51]
gi|125621244|gb|EAZ49584.1| DNA ligase [Vibrio cholerae V51]
Length = 669
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 274/670 (40%), Positives = 402/670 (60%), Gaps = 34/670 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S ++ R+TEL+K LH H + YY+ D P I D +YD+L+ EL ++E +PEL++ DS +
Sbjct: 1 MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + V H M+SLDN F D ++ F +R+T+ + ++ + E K DG+A
Sbjct: 61 RVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL IC E +++ + ++ FY+ I +R +L YEIDGVV K++ + Q++L
Sbjct: 241 QRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTVV+ R+G+VIP+I S +L RP ++K P CP+C S + +E
Sbjct: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTHCPVCQSDVERVEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARCSG I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 421 EAVARCSGGLI-CQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ A+ K+K TT +F+YALGIR VGE TA LA +F +LE +
Sbjct: 480 GELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQ 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+ EQ + +P +G F Q ++ +I++L + GI W
Sbjct: 540 QASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAG 599
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L+ + K G KV +SKNT+ + G+ G KL KA +L I++
Sbjct: 600 KIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVF 659
Query: 638 DEKNFVKIVK 647
DE+ ++ +K
Sbjct: 660 DEQALIEFLK 669
>gi|432863156|ref|ZP_20087321.1| DNA ligase [Escherichia coli KTE146]
gi|431404347|gb|ELG87600.1| DNA ligase [Escherichia coli KTE146]
Length = 671
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKFNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLTQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|241764431|ref|ZP_04762455.1| DNA ligase, NAD-dependent [Acidovorax delafieldii 2AN]
gi|241366173|gb|EER60750.1| DNA ligase, NAD-dependent [Acidovorax delafieldii 2AN]
Length = 697
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 266/663 (40%), Positives = 397/663 (59%), Gaps = 49/663 (7%)
Query: 32 YYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMS 91
YY+ D P + D +YD + EL+ +E +P+L+T DS TQ V + V H M+S
Sbjct: 30 YYVMDEPTVPDAEYDSVFRELQALETAHPDLITPDSPTQRVIGAVMDGLPPVRHVVPMLS 89
Query: 92 LDNGFSDE--DVIIFNKRITNELKLTKN---IEYIAELKFDGIAVNLRYEYGYLKQASTR 146
+ E F+ R+ +EL L + +EY+AE KFDG+A++LRYE G L QA+TR
Sbjct: 90 IHTETDTEATGAQAFDARVRHELGLAPSDPPVEYVAEPKFDGLAMSLRYENGRLVQAATR 149
Query: 147 GDGNIGENITTNIHIIHKIPLVLNIKYP-------PELLEVRCEVLIYKKDFIKLNKYRY 199
GDG +GE++T NI I +IPLVL P P LLEVR EV + + DF LN+ +
Sbjct: 150 GDGEVGEDVTHNIRTIRQIPLVLPFDTPVSGGNNVPPLLEVRGEVYMRRADFDALNERQR 209
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELR--GMNMPS--SHSELLNW 255
G K F NPRNAAAG +RQL+ I + L FFA+G+G + G P+ +H E+L
Sbjct: 210 EHGGKTFVNPRNAAAGAVRQLDSGIAAQRPLSFFAYGLGAITPVGEGGPAFRTHYEVLQT 269
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ G + + + G +L+ +++++ R LPY+IDGVVYK+N L Q+ LGF +R
Sbjct: 270 LKSWGFPVAAQVQITQGATELVAYHQRVGASRDALPYDIDGVVYKVNSLLLQRDLGFKTR 329
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
PR+A+A+K+ ++E TKI+ I++Q+GRTG ITPVA L PV + G+T+T ATLHN EI
Sbjct: 330 EPRWAVAHKYPAQEMATKIEGIDVQVGRTGKITPVARLAPVFVGGVTVTNATLHNLFEIR 389
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
+K +++GDTV+V R+G+VIP++ + R F++PN CP+C S ++ + R
Sbjct: 390 KKGVRVGDTVIVRRAGDVIPEVVGVMPGNRVGYVPNFRMPNACPVCGSDVVREKGEANHR 449
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G C AQRK + HF++R+AM+I GLG K++++LV+AN++ T DLY++ +L+
Sbjct: 450 CTGGLF-CAAQRKEAILHFAARRAMDIEGLGDKLVDQLVDANVIRTLPDLYRLGLTSLIA 508
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L+R++ K A N+L A++KSK TT RF++ALGIRHVGE TAK+LA +F L+ + ATEE
Sbjct: 509 LERMAEKSAQNVLAALEKSKQTTLPRFLFALGIRHVGEATAKDLARHFGVLDAIMDATEE 568
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK-------------- 601
QLL + +G KA F QP +R ++ QLR G+ W +
Sbjct: 569 QLLAVNDVGPVVAKAIHTFFGQPHNREVVEQLRACGVTWPEGAPAERAPQVLAGMTVVLT 628
Query: 602 ------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +SK T+Y+V G++ G KL +A +L + +LDE +
Sbjct: 629 GTLPTLSRDAAKDLLEAAGAKVAGSVSKKTHYVVAGEEAGSKLARAQELGVPVLDEAGML 688
Query: 644 KIV 646
++
Sbjct: 689 ALL 691
>gi|445497590|ref|ZP_21464445.1| DNA ligase LigA [Janthinobacterium sp. HH01]
gi|444787585|gb|ELX09133.1| DNA ligase LigA [Janthinobacterium sp. HH01]
Length = 778
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/594 (44%), Positives = 371/594 (62%), Gaps = 19/594 (3%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ L EL++H AY++ D P I D +YD+L EL+K+EE +P+ DS T+ VG
Sbjct: 9 RIESLSAELNKHLHAYHVEDAPTIPDAEYDKLFVELQKLEEAHPQFALPDSPTKRVGAAP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V HT M+SL+NGFSDED+ F++R+ L +EY AE+K+DG+A+NLRYE
Sbjct: 69 LPQFDQVTHTVPMLSLNNGFSDEDIENFDRRVREGLDAAAAVEYAAEVKYDGLAINLRYE 128
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE++T NI I IPL L PP +L+VR EVL++K DF +N
Sbjct: 129 NGLLVQAATRGDGYTGEDVTANIRTIRTIPLRLLTPTPPAVLDVRGEVLMFKSDFEAMNA 188
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ G K+F NPRNAAAG LRQL+ +I ++ L FFA+GVG L G MP SHS LL WY
Sbjct: 189 RQREAGQKEFVNPRNAAAGSLRQLDSRITASRNLSFFAYGVGALEGAEMPLSHSALLEWY 248
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ +GL + E V+SG + L+ +YK+I R +PYEIDGVVYK N L Q+ LGF SRA
Sbjct: 249 RTMGLPVAKEGKVVSGYDGLMAYYKQIGEARPTMPYEIDGVVYKANLLQDQRTLGFVSRA 308
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PRFALA+KF ++EALT + AI +Q+GRTG ITPVA L V + G+ +T ATLHNE E+ R
Sbjct: 309 PRFALAHKFPAEEALTTVLAIEVQVGRTGAITPVARLASVFVGGVNVTNATLHNEDEVRR 368
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLR-PNDSKIFKIPNICPICNSKIIYIESNLIAR 435
K+++IGDTV+V R+G+VIP++ S +L R + + + +P CP+C S ++ E IAR
Sbjct: 369 KDVRIGDTVIVRRAGDVIPEVLSVVLERRLSPEPEAYVLPKTCPVCGSHVVREEGEAIAR 428
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
CSG C AQRK ++HF+ R+ M+I GLG + I+ LV V DLY + ++LL
Sbjct: 429 CSGGLF-CSAQRKEAIRHFAGRRMMDIEGLGDRYIDNLVEHGQVQRVADLYSLKLEDLLE 487
Query: 496 LDRVSN-----------------KLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKE 538
+ R+++ K A+N+L AI SK R ++ALGIRHVGE+TAK
Sbjct: 488 MKRLADEREGTTPETVAQGKIATKWADNLLEAIAASKNPPLERMLFALGIRHVGESTAKT 547
Query: 539 LANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI 592
LA + + + + L +P IG ++ F +P ++ I L G+
Sbjct: 548 LAEWLGRFDLIRRVPAALLRVLPDIGGIVAESIADFFAEPKNQEAIDALLAAGV 601
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 36/168 (21%)
Query: 513 KSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFI 572
+ KL T + + ALGI + E +K+L LE + + +P + +A
Sbjct: 614 REKLDTV-KLMAALGIPKLTEPRSKQLVEQEVTLEVLAHLPVFTVFGLP---AGVAEALE 669
Query: 573 KFINQPLHR---LLISQLRDVGIYWLNN------------------PN-----------T 600
++ +P HR + + QLR + L PN
Sbjct: 670 TWMAEPGHREQLIALDQLRKDLLAQLPEQAAEGPLTGKTFVLTGTLPNLSRDQAGAMIEA 729
Query: 601 KGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 648
+GGKV +SK T+YLV G G KL KA +L + ILDE + +++
Sbjct: 730 RGGKVSGSVSKKTHYLVAGADAGSKLAKAQELEVTILDEAGLLALLEA 777
>gi|424815514|ref|ZP_18240665.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ECD227]
gi|325496534|gb|EGC94393.1| NAD-dependent DNA ligase LigA [Escherichia fergusonii ECD227]
Length = 671
Score = 533 bits (1374), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRSGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|432544003|ref|ZP_19780846.1| DNA ligase [Escherichia coli KTE236]
gi|432549495|ref|ZP_19786261.1| DNA ligase [Escherichia coli KTE237]
gi|432622649|ref|ZP_19858677.1| DNA ligase [Escherichia coli KTE76]
gi|432816145|ref|ZP_20049928.1| DNA ligase [Escherichia coli KTE115]
gi|431074413|gb|ELD81977.1| DNA ligase [Escherichia coli KTE236]
gi|431079127|gb|ELD86097.1| DNA ligase [Escherichia coli KTE237]
gi|431158309|gb|ELE58908.1| DNA ligase [Escherichia coli KTE76]
gi|431363560|gb|ELG50113.1| DNA ligase [Escherichia coli KTE115]
Length = 671
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 404/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P++H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPNTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLTQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|301022290|ref|ZP_07186186.1| DNA ligase, NAD-dependent [Escherichia coli MS 69-1]
gi|419920443|ref|ZP_14438561.1| NAD-dependent DNA ligase LigA [Escherichia coli KD2]
gi|300397609|gb|EFJ81147.1| DNA ligase, NAD-dependent [Escherichia coli MS 69-1]
gi|388384975|gb|EIL46681.1| NAD-dependent DNA ligase LigA [Escherichia coli KD2]
Length = 671
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|452971802|ref|ZP_21970029.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
EC4009]
Length = 671
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 401/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTYCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFFYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|82777805|ref|YP_404154.1| NAD-dependent DNA ligase LigA [Shigella dysenteriae Sd197]
gi|309784866|ref|ZP_07679499.1| DNA ligase, NAD-dependent [Shigella dysenteriae 1617]
gi|123728534|sp|Q32DE2.1|DNLJ_SHIDS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|81241953|gb|ABB62663.1| DNA ligase [Shigella dysenteriae Sd197]
gi|308927236|gb|EFP72710.1| DNA ligase, NAD-dependent [Shigella dysenteriae 1617]
Length = 671
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 269/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTILAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGSELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLVFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP DS+ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDSREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|432948265|ref|ZP_20143421.1| DNA ligase [Escherichia coli KTE196]
gi|433043970|ref|ZP_20231464.1| DNA ligase [Escherichia coli KTE117]
gi|431458243|gb|ELH38580.1| DNA ligase [Escherichia coli KTE196]
gi|431555276|gb|ELI29118.1| DNA ligase [Escherichia coli KTE117]
Length = 671
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 401/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLATYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|422306516|ref|ZP_16393692.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1035(8)]
gi|408626251|gb|EKK99126.1| DNA ligase, NAD-dependent [Vibrio cholerae CP1035(8)]
Length = 669
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 274/670 (40%), Positives = 403/670 (60%), Gaps = 34/670 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S ++ R+TEL+K LH H + YY+ D P I D +YD+L+ EL ++E +PEL++ DS +
Sbjct: 1 MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + V H M+SLDN F D ++ F +R+T+ + ++ + E K DG+A
Sbjct: 61 RVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSVFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL IC E +++ + ++ FY++I +R +L YEIDGVV K++ + Q++L
Sbjct: 241 QRFLQLKGWGLPICPETKLVTSLAEVKAFYQEILQRRQSLAYEIDGVVIKVDDIQLQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTVV+ R+G+VIP+I S +L RP ++K P CP+C S + +E
Sbjct: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARCSG I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 421 EAVARCSGGLI-CQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ A+ K+K TT +F+YALGIR VGE TA LA +F +LE +
Sbjct: 480 GELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQ 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+ EQ + +P +G F Q ++ +I++L + GI W
Sbjct: 540 QASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTTAPVAVDSALAG 599
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L+ + K G KV +SKNT+ + G+ G KL KA +L I++
Sbjct: 600 KIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVF 659
Query: 638 DEKNFVKIVK 647
DE+ ++ +K
Sbjct: 660 DEQALIEFLK 669
>gi|308187689|ref|YP_003931820.1| DNA ligase [Pantoea vagans C9-1]
gi|308058199|gb|ADO10371.1| DNA ligase [Pantoea vagans C9-1]
Length = 672
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 266/666 (39%), Positives = 398/666 (59%), Gaps = 36/666 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+TEL+ L H Y++ D P + D +YD+L+ EL+++EE++P+L+T DS TQ VG
Sbjct: 8 ITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRQLEEEHPDLITPDSPTQRVGAAPL 67
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
+ V H M+SLDN F + + FNKR+ + LK + +I Y ELK DG AV+L YE
Sbjct: 68 TVFEQVRHEVPMLSLDNAFDEATFMAFNKRVQDRLKSSDDITYCCELKLDGAAVSLMYEN 127
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L +A+TRGDG GENIT N+ I IPL L P LEVR E+ + ++ F KLN+
Sbjct: 128 GLLVRAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRGEIFMTQRGFEKLNEE 187
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
K F NPRNAAAG LRQL+P+I + L FF +G G L G MP SH L ++
Sbjct: 188 ARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEMPHSHMGRLQQFK 247
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
GL + ++ + + FY+ I +R NL ++IDGVV K++ + Q++LGF +RAP
Sbjct: 248 AWGLPVSDRIKLVHNAEEALAFYRDIEQQRPNLGFDIDGVVIKVDSQALQEQLGFVARAP 307
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+A+KF ++E LT ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 308 RWAIAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIERL 367
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
++IGD VV+ R+G+VIP++ + +++ RP +++ P CP+C S++ +E + RC+
Sbjct: 368 GLRIGDRVVIRRAGDVIPQVVNVVIAERPEETREVVFPAHCPVCGSEVERVEGESVTRCT 427
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++ L LD
Sbjct: 428 GGLI-CGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVDTPADLFRLTAGKLTGLD 486
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+ K A NI+ A++K+K TT +RF+YALGIR VGE TA LAN+F L+ + A E L
Sbjct: 487 RMGPKSAQNIVDALEKAKSTTLARFLYALGIREVGEATAANLANHFGELQKVMDADLEAL 546
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW---------------------- 594
+ +P +G F+ + +R +I QL D+GI+W
Sbjct: 547 IAVPDVGKVVAAHVRNFMEEESNREVIRQLTDDIGIHWPQVVVVKAEEIDSPFAGKTVVL 606
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+N + K G KV +SK T+ L+ G+ G KL KA +L I+++DE
Sbjct: 607 TGSLSQMNRDDAKAQLIALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEM 666
Query: 643 VKIVKG 648
++++
Sbjct: 667 IRLLDA 672
>gi|240948595|ref|ZP_04752968.1| NAD-dependent DNA ligase LigA [Actinobacillus minor NM305]
gi|240297103|gb|EER47674.1| NAD-dependent DNA ligase LigA [Actinobacillus minor NM305]
Length = 679
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 276/660 (41%), Positives = 400/660 (60%), Gaps = 35/660 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+ +L + Y++ DNP++ D +YD+L+ ELK +E ++PEL+T DS TQ VG +
Sbjct: 19 LRNKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELITPDSPTQRVGAKPLDGF 78
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-KNIEYIAELKFDGIAVNLRYEYGY 139
V H M+SLDN FSDED+ F +R+ + + +T ++++ E K DG+AV++ Y G
Sbjct: 79 SQVTHELPMLSLDNAFSDEDLDGFLRRMESYISVTPSSLDFCCEPKLDGLAVSILYVNGV 138
Query: 140 LKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRY 199
L QA+TRGDG GE+IT NI I IPL L PP LEVR EV + +K F LN+
Sbjct: 139 LTQAATRGDGTTGEDITANIRTIRNIPLRLKTDNPPLRLEVRGEVFMPQKGFEALNQKAL 198
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHSELLNWYQK 258
G K F NPRNAAAG LRQL+PKI + L A+ +G + +P++H E L W +
Sbjct: 199 EKGEKTFANPRNAAAGSLRQLDPKITAQRPLMLNAYSIGIYDSDDELPNTHFERLQWLKS 258
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
+G+ + E + G L++FY I KR L Y+IDG V K+N ++ Q++LGF SR+PR
Sbjct: 259 LGIPVNNEIRLEKGRENLLKFYADIQTKRPTLGYDIDGTVLKVNDIALQEQLGFISRSPR 318
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 319 WAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERLG 378
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
I IGDTV++ R+G+VIP+I + RP ++K P CPIC S ++ +E +ARC+G
Sbjct: 379 IAIGDTVIIRRAGDVIPQIIGIVAERRPENAKKITFPTACPICGSAVVRVEGEAVARCTG 438
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
C AQRK L+HF SRKAM+I G+G+K+IE+L+ +V T DL+K++ L+RL+R
Sbjct: 439 GLF-CEAQRKEALKHFVSRKAMDIDGVGEKLIEQLMERELVHTPADLFKLDQVTLMRLER 497
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N L +I+K+K TT RF++ALGIR VGE TA LAN+F +LE + AT EQL
Sbjct: 498 MGEKSAQNALNSIEKAKNTTLPRFLFALGIRDVGEATALNLANHFGSLEAIRTATFEQLQ 557
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--------NP------------ 598
+ +G ++F +P + ++ L G+ W N NP
Sbjct: 558 EVQDVGEVVANRIVRFWQEPHNVEVVEDLIQQGVVWQNIEQVEIADNPLKDKNVVLTGTL 617
Query: 599 ------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
G KV +S T+YL+ G+K G KL KA +L +K+L E++F++IV
Sbjct: 618 SVLTRDQAKALLQGLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLSEQDFLEIV 677
>gi|206579402|ref|YP_002237241.1| NAD-dependent DNA ligase LigA [Klebsiella pneumoniae 342]
gi|288934177|ref|YP_003438236.1| DNA ligase, NAD-dependent [Klebsiella variicola At-22]
gi|254781350|sp|B5XVT4.1|DNLJ_KLEP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|206568460|gb|ACI10236.1| DNA ligase, NAD-dependent [Klebsiella pneumoniae 342]
gi|288888906|gb|ADC57224.1| DNA ligase, NAD-dependent [Klebsiella variicola At-22]
Length = 671
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 408/664 (61%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P + D +YD+L+ EL+++E ++PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T ++ Y ELK DG+AV++ YE
Sbjct: 67 LTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDDLTYCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLMQAATRGDGTTGEDITSNVRTIRTIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SHS L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHSARLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ +Y+K+ R +L ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCHTPEEVLTYYRKVEEDRPHLGFDIDGVVIKVDSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVFPTHCPVCQSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL++++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLSAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F LE + +A+ E+
Sbjct: 486 DRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAALAAHFGTLEALEQASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I+QL G++W
Sbjct: 546 LQKVPDVGIVVATHTFNFFAEESNRDVIAQLLAEGVHWPAPVVVKAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 MRLL 669
>gi|432466600|ref|ZP_19708688.1| DNA ligase [Escherichia coli KTE205]
gi|432584643|ref|ZP_19821036.1| DNA ligase [Escherichia coli KTE57]
gi|433073640|ref|ZP_20260292.1| DNA ligase [Escherichia coli KTE129]
gi|433120987|ref|ZP_20306658.1| DNA ligase [Escherichia coli KTE157]
gi|433184115|ref|ZP_20368361.1| DNA ligase [Escherichia coli KTE85]
gi|430993406|gb|ELD09760.1| DNA ligase [Escherichia coli KTE205]
gi|431115639|gb|ELE19137.1| DNA ligase [Escherichia coli KTE57]
gi|431587286|gb|ELI58664.1| DNA ligase [Escherichia coli KTE129]
gi|431641978|gb|ELJ09705.1| DNA ligase [Escherichia coli KTE157]
gi|431705414|gb|ELJ70008.1| DNA ligase [Escherichia coli KTE85]
Length = 671
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + + +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTFCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|419278931|ref|ZP_13821177.1| DNA ligase, NAD-dependent [Escherichia coli DEC10E]
gi|419376340|ref|ZP_13917364.1| DNA ligase, NAD-dependent [Escherichia coli DEC14B]
gi|419381680|ref|ZP_13922630.1| DNA ligase, NAD-dependent [Escherichia coli DEC14C]
gi|419387026|ref|ZP_13927904.1| DNA ligase, NAD-dependent [Escherichia coli DEC14D]
gi|378127632|gb|EHW89020.1| DNA ligase, NAD-dependent [Escherichia coli DEC10E]
gi|378219063|gb|EHX79332.1| DNA ligase, NAD-dependent [Escherichia coli DEC14B]
gi|378227323|gb|EHX87495.1| DNA ligase, NAD-dependent [Escherichia coli DEC14C]
gi|378231553|gb|EHX91664.1| DNA ligase, NAD-dependent [Escherichia coli DEC14D]
Length = 671
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEDIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|422806385|ref|ZP_16854817.1| DNA ligase [Escherichia fergusonii B253]
gi|324112923|gb|EGC06899.1| DNA ligase [Escherichia fergusonii B253]
Length = 671
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRSGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHAHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|432412600|ref|ZP_19655263.1| DNA ligase [Escherichia coli KTE39]
gi|430935007|gb|ELC55354.1| DNA ligase [Escherichia coli KTE39]
Length = 671
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAVYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|429886698|ref|ZP_19368243.1| DNA ligase [Vibrio cholerae PS15]
gi|429226383|gb|EKY32506.1| DNA ligase [Vibrio cholerae PS15]
Length = 669
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 274/670 (40%), Positives = 401/670 (59%), Gaps = 34/670 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S ++ R+TEL+K LH H + YY+ D P I D +YD+L+ EL ++E +PEL++ DS +
Sbjct: 1 MSDVAQRLTELRKTLHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + V H M+SLDN F D ++ F +R+T+ + ++ + E K DG+A
Sbjct: 61 RVGGRPLDAFESVVHEIPMLSLDNAFDDSELDSFYRRMTDRIPAVQHSAFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH
Sbjct: 181 FEALNTRSLKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL IC E +++ + ++ FY+ I +R L YEIDGVV K++ + Q++L
Sbjct: 241 QRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQFLAYEIDGVVIKVDDIQLQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTVV+ R+G+VIP+I S +L RP ++K P CP+C S + +E
Sbjct: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARCSG I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 421 EAVARCSGGLI-CQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ A+ K+K TT +F+YALGIR VGE TA LA +F +LE +
Sbjct: 480 GELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQ 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+ EQ + +P +G F Q ++ +I++L + GI W
Sbjct: 540 QASLEQFIEVPDVGVVVANHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAG 599
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L+ + K G KV +SKNT+ + G+ G KL KA +L I++
Sbjct: 600 KIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVF 659
Query: 638 DEKNFVKIVK 647
DE+ ++ +K
Sbjct: 660 DEQALIEFLK 669
>gi|432719512|ref|ZP_19954480.1| DNA ligase [Escherichia coli KTE9]
gi|431261705|gb|ELF53728.1| DNA ligase [Escherichia coli KTE9]
Length = 671
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVIFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|428966771|ref|ZP_19037500.1| DNA ligase, NAD-dependent [Escherichia coli 90.0091]
gi|427220401|gb|EKV89321.1| DNA ligase, NAD-dependent [Escherichia coli 90.0091]
Length = 671
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K G+ + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTYCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|300923365|ref|ZP_07139409.1| DNA ligase, NAD-dependent [Escherichia coli MS 182-1]
gi|300420362|gb|EFK03673.1| DNA ligase, NAD-dependent [Escherichia coli MS 182-1]
Length = 671
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKGFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|300940348|ref|ZP_07154941.1| DNA ligase, NAD-dependent [Escherichia coli MS 21-1]
gi|432681015|ref|ZP_19916388.1| DNA ligase [Escherichia coli KTE143]
gi|300454839|gb|EFK18332.1| DNA ligase, NAD-dependent [Escherichia coli MS 21-1]
gi|431219745|gb|ELF17134.1| DNA ligase [Escherichia coli KTE143]
Length = 671
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISALLAEGVHWPEPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|16130337|ref|NP_416906.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
MG1655]
gi|170019306|ref|YP_001724260.1| NAD-dependent DNA ligase LigA [Escherichia coli ATCC 8739]
gi|170082020|ref|YP_001731340.1| NAD-dependent DNA ligase LigA [Escherichia coli str. K-12 substr.
DH10B]
gi|188495579|ref|ZP_03002849.1| DNA ligase, NAD-dependent [Escherichia coli 53638]
gi|238901574|ref|YP_002927370.1| NAD-dependent DNA ligase LigA [Escherichia coli BW2952]
gi|300951893|ref|ZP_07165701.1| DNA ligase, NAD-dependent [Escherichia coli MS 116-1]
gi|300957240|ref|ZP_07169472.1| DNA ligase, NAD-dependent [Escherichia coli MS 175-1]
gi|301023745|ref|ZP_07187485.1| DNA ligase, NAD-dependent [Escherichia coli MS 196-1]
gi|312973347|ref|ZP_07787519.1| DNA ligase, NAD-dependent [Escherichia coli 1827-70]
gi|386281487|ref|ZP_10059149.1| DNA ligase [Escherichia sp. 4_1_40B]
gi|386594813|ref|YP_006091213.1| NAD-dependent DNA ligase [Escherichia coli DH1]
gi|386705688|ref|YP_006169535.1| DNA ligase [Escherichia coli P12b]
gi|387612963|ref|YP_006116079.1| DNA ligase [Escherichia coli ETEC H10407]
gi|387622118|ref|YP_006129746.1| NAD-dependent DNA ligase LigA [Escherichia coli DH1]
gi|388478455|ref|YP_490647.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
W3110]
gi|404375743|ref|ZP_10980924.1| DNA ligase [Escherichia sp. 1_1_43]
gi|415778459|ref|ZP_11489505.1| DNA ligase, NAD-dependent [Escherichia coli 3431]
gi|417262040|ref|ZP_12049528.1| DNA ligase (NAD+) [Escherichia coli 2.3916]
gi|417272233|ref|ZP_12059582.1| DNA ligase (NAD+) [Escherichia coli 2.4168]
gi|417277538|ref|ZP_12064861.1| DNA ligase (NAD+) [Escherichia coli 3.2303]
gi|417292603|ref|ZP_12079884.1| DNA ligase (NAD+) [Escherichia coli B41]
gi|417613880|ref|ZP_12264338.1| DNA ligase, NAD-dependent [Escherichia coli STEC_EH250]
gi|417618998|ref|ZP_12269412.1| DNA ligase, NAD-dependent [Escherichia coli G58-1]
gi|417635334|ref|ZP_12285547.1| DNA ligase, NAD-dependent [Escherichia coli STEC_S1191]
gi|417943788|ref|ZP_12587035.1| NAD-dependent DNA ligase LigA [Escherichia coli XH140A]
gi|417975705|ref|ZP_12616502.1| NAD-dependent DNA ligase LigA [Escherichia coli XH001]
gi|418303862|ref|ZP_12915656.1| DNA ligase, NAD-dependent [Escherichia coli UMNF18]
gi|418957214|ref|ZP_13509138.1| DNA ligase, NAD-dependent [Escherichia coli J53]
gi|419143346|ref|ZP_13688084.1| DNA ligase, NAD-dependent [Escherichia coli DEC6A]
gi|419149470|ref|ZP_13694123.1| DNA ligase, NAD-dependent [Escherichia coli DEC6B]
gi|419154805|ref|ZP_13699368.1| DNA ligase, NAD-dependent [Escherichia coli DEC6C]
gi|419160097|ref|ZP_13704602.1| DNA ligase, NAD-dependent [Escherichia coli DEC6D]
gi|419165219|ref|ZP_13709675.1| DNA ligase, NAD-dependent [Escherichia coli DEC6E]
gi|419175917|ref|ZP_13719733.1| DNA ligase, NAD-dependent [Escherichia coli DEC7B]
gi|419810125|ref|ZP_14335007.1| NAD-dependent DNA ligase LigA [Escherichia coli O32:H37 str. P4]
gi|419939054|ref|ZP_14455855.1| NAD-dependent DNA ligase LigA [Escherichia coli 75]
gi|421774583|ref|ZP_16211195.1| DNA ligase, NAD-dependent [Escherichia coli AD30]
gi|422767063|ref|ZP_16820790.1| DNA ligase [Escherichia coli E1520]
gi|422771702|ref|ZP_16825391.1| DNA ligase [Escherichia coli E482]
gi|422819431|ref|ZP_16867642.1| DNA ligase [Escherichia coli M919]
gi|423704227|ref|ZP_17678652.1| DNA ligase [Escherichia coli H730]
gi|425115872|ref|ZP_18517671.1| DNA ligase, NAD-dependent [Escherichia coli 8.0566]
gi|425120638|ref|ZP_18522334.1| DNA ligase, NAD-dependent [Escherichia coli 8.0569]
gi|425273565|ref|ZP_18664976.1| DNA ligase, NAD-dependent [Escherichia coli TW15901]
gi|425284110|ref|ZP_18675148.1| DNA ligase, NAD-dependent [Escherichia coli TW00353]
gi|432417907|ref|ZP_19660506.1| DNA ligase [Escherichia coli KTE44]
gi|432564653|ref|ZP_19801233.1| DNA ligase [Escherichia coli KTE51]
gi|432628041|ref|ZP_19864017.1| DNA ligase [Escherichia coli KTE77]
gi|432686242|ref|ZP_19921538.1| DNA ligase [Escherichia coli KTE156]
gi|432692365|ref|ZP_19927592.1| DNA ligase [Escherichia coli KTE161]
gi|432737908|ref|ZP_19972665.1| DNA ligase [Escherichia coli KTE42]
gi|432876148|ref|ZP_20094188.1| DNA ligase [Escherichia coli KTE154]
gi|432955971|ref|ZP_20147790.1| DNA ligase [Escherichia coli KTE197]
gi|433048778|ref|ZP_20236127.1| DNA ligase [Escherichia coli KTE120]
gi|442591999|ref|ZP_21009979.1| DNA ligase [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|450246370|ref|ZP_21900906.1| NAD-dependent DNA ligase LigA [Escherichia coli S17]
gi|2506362|sp|P15042.2|DNLJ_ECOLI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|254781324|sp|B1XA82.1|DNLJ_ECODH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|254781325|sp|B1IX60.1|DNLJ_ECOLC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|149242732|pdb|2OWO|A Chain A, Last Stop On The Road To Repair: Structure Of E.Coli Dna
Ligase Bound To Nicked Dna-Adenylate
gi|146613|gb|AAA24070.1| DNA ligase (EC 6.5.1.2) [Escherichia coli]
gi|1788750|gb|AAC75464.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
MG1655]
gi|85675396|dbj|BAA16282.2| DNA ligase, NAD(+)-dependent [Escherichia coli str. K12 substr.
W3110]
gi|169754234|gb|ACA76933.1| DNA ligase, NAD-dependent [Escherichia coli ATCC 8739]
gi|169889855|gb|ACB03562.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
DH10B]
gi|188490778|gb|EDU65881.1| DNA ligase, NAD-dependent [Escherichia coli 53638]
gi|238860822|gb|ACR62820.1| DNA ligase, NAD(+)-dependent [Escherichia coli BW2952]
gi|260448502|gb|ACX38924.1| DNA ligase, NAD-dependent [Escherichia coli DH1]
gi|299880716|gb|EFI88927.1| DNA ligase, NAD-dependent [Escherichia coli MS 196-1]
gi|300315993|gb|EFJ65777.1| DNA ligase, NAD-dependent [Escherichia coli MS 175-1]
gi|300448878|gb|EFK12498.1| DNA ligase, NAD-dependent [Escherichia coli MS 116-1]
gi|309702699|emb|CBJ02028.1| DNA ligase [Escherichia coli ETEC H10407]
gi|310331942|gb|EFP99177.1| DNA ligase, NAD-dependent [Escherichia coli 1827-70]
gi|315137042|dbj|BAJ44201.1| NAD-dependent DNA ligase LigA [Escherichia coli DH1]
gi|315615662|gb|EFU96294.1| DNA ligase, NAD-dependent [Escherichia coli 3431]
gi|323936436|gb|EGB32725.1| DNA ligase [Escherichia coli E1520]
gi|323941344|gb|EGB37529.1| DNA ligase [Escherichia coli E482]
gi|339415960|gb|AEJ57632.1| DNA ligase, NAD-dependent [Escherichia coli UMNF18]
gi|342364650|gb|EGU28750.1| NAD-dependent DNA ligase LigA [Escherichia coli XH140A]
gi|344194474|gb|EGV48547.1| NAD-dependent DNA ligase LigA [Escherichia coli XH001]
gi|345362074|gb|EGW94231.1| DNA ligase, NAD-dependent [Escherichia coli STEC_EH250]
gi|345375712|gb|EGX07659.1| DNA ligase, NAD-dependent [Escherichia coli G58-1]
gi|345387617|gb|EGX17439.1| DNA ligase, NAD-dependent [Escherichia coli STEC_S1191]
gi|359332728|dbj|BAL39175.1| DNA ligase, NAD(+)-dependent [Escherichia coli str. K-12 substr.
MDS42]
gi|377992592|gb|EHV55739.1| DNA ligase, NAD-dependent [Escherichia coli DEC6B]
gi|377993859|gb|EHV56990.1| DNA ligase, NAD-dependent [Escherichia coli DEC6A]
gi|377997387|gb|EHV60494.1| DNA ligase, NAD-dependent [Escherichia coli DEC6C]
gi|378007441|gb|EHV70410.1| DNA ligase, NAD-dependent [Escherichia coli DEC6D]
gi|378009671|gb|EHV72625.1| DNA ligase, NAD-dependent [Escherichia coli DEC6E]
gi|378031889|gb|EHV94471.1| DNA ligase, NAD-dependent [Escherichia coli DEC7B]
gi|383103856|gb|AFG41365.1| DNA ligase [Escherichia coli P12b]
gi|384379861|gb|EIE37728.1| DNA ligase, NAD-dependent [Escherichia coli J53]
gi|385156847|gb|EIF18841.1| NAD-dependent DNA ligase LigA [Escherichia coli O32:H37 str. P4]
gi|385537210|gb|EIF84093.1| DNA ligase [Escherichia coli M919]
gi|385707343|gb|EIG44375.1| DNA ligase [Escherichia coli H730]
gi|386121626|gb|EIG70241.1| DNA ligase [Escherichia sp. 4_1_40B]
gi|386225167|gb|EII47502.1| DNA ligase (NAD+) [Escherichia coli 2.3916]
gi|386235933|gb|EII67909.1| DNA ligase (NAD+) [Escherichia coli 2.4168]
gi|386239606|gb|EII76533.1| DNA ligase (NAD+) [Escherichia coli 3.2303]
gi|386254925|gb|EIJ04615.1| DNA ligase (NAD+) [Escherichia coli B41]
gi|388408545|gb|EIL68886.1| NAD-dependent DNA ligase LigA [Escherichia coli 75]
gi|404290665|gb|EJZ47570.1| DNA ligase [Escherichia sp. 1_1_43]
gi|408192842|gb|EKI18401.1| DNA ligase, NAD-dependent [Escherichia coli TW15901]
gi|408201287|gb|EKI26442.1| DNA ligase, NAD-dependent [Escherichia coli TW00353]
gi|408460331|gb|EKJ84110.1| DNA ligase, NAD-dependent [Escherichia coli AD30]
gi|408567584|gb|EKK43638.1| DNA ligase, NAD-dependent [Escherichia coli 8.0566]
gi|408568388|gb|EKK44419.1| DNA ligase, NAD-dependent [Escherichia coli 8.0569]
gi|430938629|gb|ELC58868.1| DNA ligase [Escherichia coli KTE44]
gi|431092624|gb|ELD98305.1| DNA ligase [Escherichia coli KTE51]
gi|431162652|gb|ELE63093.1| DNA ligase [Escherichia coli KTE77]
gi|431221636|gb|ELF18952.1| DNA ligase [Escherichia coli KTE156]
gi|431226295|gb|ELF23460.1| DNA ligase [Escherichia coli KTE161]
gi|431281697|gb|ELF72596.1| DNA ligase [Escherichia coli KTE42]
gi|431419670|gb|ELH02010.1| DNA ligase [Escherichia coli KTE154]
gi|431466822|gb|ELH46838.1| DNA ligase [Escherichia coli KTE197]
gi|431564047|gb|ELI37231.1| DNA ligase [Escherichia coli KTE120]
gi|441608152|emb|CCP99005.1| DNA ligase [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|449319340|gb|EMD09392.1| NAD-dependent DNA ligase LigA [Escherichia coli S17]
Length = 671
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|432490131|ref|ZP_19732001.1| DNA ligase [Escherichia coli KTE213]
gi|432840155|ref|ZP_20073621.1| DNA ligase [Escherichia coli KTE140]
gi|433204030|ref|ZP_20387799.1| DNA ligase [Escherichia coli KTE95]
gi|431019816|gb|ELD33208.1| DNA ligase [Escherichia coli KTE213]
gi|431388427|gb|ELG72158.1| DNA ligase [Escherichia coli KTE140]
gi|431720467|gb|ELJ84495.1| DNA ligase [Escherichia coli KTE95]
Length = 671
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/664 (40%), Positives = 401/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVIFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNPNTK----- 601
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIIINAEEIDSPFAGKTVVL 605
Query: 602 -------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDYAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|422830940|ref|ZP_16879092.1| DNA ligase [Escherichia coli B093]
gi|371603217|gb|EHN91889.1| DNA ligase [Escherichia coli B093]
Length = 671
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISALLAEGVHWPEPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|419829554|ref|ZP_14353040.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-1A2]
gi|419832525|ref|ZP_14355987.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-61A2]
gi|422916738|ref|ZP_16951066.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-02A1]
gi|423819406|ref|ZP_17715664.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-55C2]
gi|423852018|ref|ZP_17719457.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-59A1]
gi|423880166|ref|ZP_17723062.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-60A1]
gi|423997152|ref|ZP_17740411.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-02C1]
gi|424015860|ref|ZP_17755701.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-55B2]
gi|424018796|ref|ZP_17758592.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-59B1]
gi|424624340|ref|ZP_18062812.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-50A1]
gi|424628838|ref|ZP_18067136.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-51A1]
gi|424632871|ref|ZP_18070981.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-52A1]
gi|424635961|ref|ZP_18073976.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-55A1]
gi|424639901|ref|ZP_18077791.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-56A1]
gi|424647935|ref|ZP_18085605.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-57A1]
gi|443526758|ref|ZP_21092826.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-78A1]
gi|341639011|gb|EGS63644.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-02A1]
gi|408014707|gb|EKG52331.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-50A1]
gi|408020257|gb|EKG57596.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-52A1]
gi|408025587|gb|EKG62639.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-56A1]
gi|408026194|gb|EKG63215.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-55A1]
gi|408035781|gb|EKG72237.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-57A1]
gi|408058036|gb|EKG92859.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-51A1]
gi|408621139|gb|EKK94142.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-1A2]
gi|408636051|gb|EKL08218.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-55C2]
gi|408642503|gb|EKL14247.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-60A1]
gi|408643883|gb|EKL15596.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-59A1]
gi|408651169|gb|EKL22425.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-61A2]
gi|408853859|gb|EKL93638.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-02C1]
gi|408861461|gb|EKM01051.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-55B2]
gi|408869103|gb|EKM08407.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-59B1]
gi|443454905|gb|ELT18704.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-78A1]
Length = 669
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 274/670 (40%), Positives = 402/670 (60%), Gaps = 34/670 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S ++ R+TEL+K LH H + YY+ D P I D +YD+L+ EL ++E +PEL++ DS +
Sbjct: 1 MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + V H M+SLDN F D ++ F +R+T+ + ++ + E K DG+A
Sbjct: 61 RVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL IC E +++ + ++ FY+ I +R +L YEIDGVV K++ + Q++L
Sbjct: 241 QRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLVYEIDGVVIKVDDIQLQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTVV+ R+G+VIP+I S +L RP ++K P CP+C S + +E
Sbjct: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARCSG I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 421 EAVARCSGGLI-CQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ A+ K+K TT +F+YALGIR VGE TA LA +F +LE +
Sbjct: 480 GELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQ 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+ EQ + +P +G F Q ++ +I++L + GI W
Sbjct: 540 QASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAG 599
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L+ + K G KV +SKNT+ + G+ G KL KA +L I++
Sbjct: 600 KIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVF 659
Query: 638 DEKNFVKIVK 647
DE+ ++ +K
Sbjct: 660 DEQALIEFLK 669
>gi|395235160|ref|ZP_10413375.1| NAD-dependent DNA ligase LigA [Enterobacter sp. Ag1]
gi|394730056|gb|EJF29948.1| NAD-dependent DNA ligase LigA [Enterobacter sp. Ag1]
Length = 672
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 265/661 (40%), Positives = 393/661 (59%), Gaps = 36/661 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+ L H Y++ DNP I D +YD+L+ EL+ +EE +PEL+T+DS TQ VG
Sbjct: 11 LRTTLRHHEYLYHVQDNPEIPDAEYDRLMRELRALEEAHPELITQDSPTQRVGAAPLSEF 70
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
V H M+SLDN F + + FNKR+ + LK + + + ELK DG+AV+L YE G L
Sbjct: 71 TQVRHEVPMLSLDNVFDEASYLAFNKRVLDRLKSSDALTFCCELKLDGLAVSLLYEDGVL 130
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
+A+TRGDG GENIT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 131 VRAATRGDGTTGENITSNVRTIRAIPLKLHGDNIPRRLEVRGEVFLPQAGFEKINEEARR 190
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIG 260
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SH L ++ G
Sbjct: 191 TGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPGSHMARLQQFKAWG 250
Query: 261 LSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFA 320
L + + S +++ FY ++ R L ++IDGVV K++ L+ Q+ LGF +RAPR+A
Sbjct: 251 LPVSDRIRLCSTPEEVLAFYHQVEADRPTLGFDIDGVVIKVDSLALQETLGFVARAPRWA 310
Query: 321 LAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQ 380
+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R ++
Sbjct: 311 VAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIERLGLR 370
Query: 381 IGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSW 440
IGD VV+ R+G+VIP++ + S RP D++ P CP+C S + +E +ARC+G
Sbjct: 371 IGDRVVIRRAGDVIPQVVGVVESERPEDTQAIVFPTQCPVCGSDVERVEGEAVARCTGGL 430
Query: 441 IECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS 500
I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L LDR+
Sbjct: 431 I-CGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLDRMG 489
Query: 501 NKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNI 560
K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F L+ + A+ E+L +
Sbjct: 490 PKSAQNVVDALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLDALISASIEELQKV 549
Query: 561 PKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW----------LNNP----------- 598
P +G F + +R +I QL + G++W +++P
Sbjct: 550 PDVGIVVATHTFNFFAEESNRDVIRQLTEEAGVHWPAPVVVKAEEIDSPFAGKTVVLTGS 609
Query: 599 -------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
G KV +SK T+ ++ G+ G KL KA +L I+++DE +++
Sbjct: 610 LSILSRDEAKDRLTALGAKVAGSVSKKTDLVIAGEAAGSKLVKAQELGIQVIDEAEMIRL 669
Query: 646 V 646
+
Sbjct: 670 L 670
>gi|157161876|ref|YP_001459194.1| NAD-dependent DNA ligase LigA [Escherichia coli HS]
gi|251785745|ref|YP_003000049.1| DNA ligase [Escherichia coli BL21(DE3)]
gi|253772690|ref|YP_003035521.1| NAD-dependent DNA ligase LigA [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162394|ref|YP_003045502.1| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606]
gi|254289155|ref|YP_003054903.1| NAD-dependent DNA ligase LigA [Escherichia coli BL21(DE3)]
gi|297517308|ref|ZP_06935694.1| NAD-dependent DNA ligase LigA [Escherichia coli OP50]
gi|300928569|ref|ZP_07144093.1| DNA ligase, NAD-dependent [Escherichia coli MS 187-1]
gi|386615068|ref|YP_006134734.1| DNA ligase, NAD-dependent LigA [Escherichia coli UMNK88]
gi|422787013|ref|ZP_16839752.1| DNA ligase [Escherichia coli H489]
gi|422792554|ref|ZP_16845254.1| DNA ligase [Escherichia coli TA007]
gi|442596541|ref|ZP_21014348.1| DNA ligase [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|190359254|sp|A8A2Q7.1|DNLJ_ECOHS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|157067556|gb|ABV06811.1| DNA ligase, NAD-dependent [Escherichia coli HS]
gi|242378018|emb|CAQ32789.1| DNA ligase [Escherichia coli BL21(DE3)]
gi|253323734|gb|ACT28336.1| DNA ligase, NAD-dependent [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253974295|gb|ACT39966.1| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606]
gi|253978462|gb|ACT44132.1| NAD-dependent DNA ligase LigA [Escherichia coli BL21(DE3)]
gi|300463441|gb|EFK26934.1| DNA ligase, NAD-dependent [Escherichia coli MS 187-1]
gi|323961212|gb|EGB56824.1| DNA ligase [Escherichia coli H489]
gi|323970900|gb|EGB66151.1| DNA ligase [Escherichia coli TA007]
gi|332344237|gb|AEE57571.1| DNA ligase, NAD-dependent LigA [Escherichia coli UMNK88]
gi|441654960|emb|CCQ00261.1| DNA ligase [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
Length = 671
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|157156100|ref|YP_001463741.1| NAD-dependent DNA ligase LigA [Escherichia coli E24377A]
gi|193066723|ref|ZP_03047750.1| DNA ligase, NAD-dependent [Escherichia coli E22]
gi|194430461|ref|ZP_03062941.1| DNA ligase, NAD-dependent [Escherichia coli B171]
gi|209919893|ref|YP_002293977.1| NAD-dependent DNA ligase LigA [Escherichia coli SE11]
gi|218554944|ref|YP_002387857.1| NAD-dependent DNA ligase LigA [Escherichia coli IAI1]
gi|218696047|ref|YP_002403714.1| NAD-dependent DNA ligase LigA [Escherichia coli 55989]
gi|260845052|ref|YP_003222830.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O103:H2 str.
12009]
gi|260856513|ref|YP_003230404.1| NAD-dependent DNA ligase LigA [Escherichia coli O26:H11 str. 11368]
gi|260869108|ref|YP_003235510.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O111:H- str.
11128]
gi|293446772|ref|ZP_06663194.1| DNA ligase [Escherichia coli B088]
gi|300817349|ref|ZP_07097566.1| DNA ligase, NAD-dependent [Escherichia coli MS 107-1]
gi|300820921|ref|ZP_07101071.1| DNA ligase, NAD-dependent [Escherichia coli MS 119-7]
gi|300903139|ref|ZP_07121073.1| DNA ligase, NAD-dependent [Escherichia coli MS 84-1]
gi|300921341|ref|ZP_07137704.1| DNA ligase, NAD-dependent [Escherichia coli MS 115-1]
gi|301306250|ref|ZP_07212323.1| DNA ligase, NAD-dependent [Escherichia coli MS 124-1]
gi|301328910|ref|ZP_07221944.1| DNA ligase, NAD-dependent [Escherichia coli MS 78-1]
gi|307312589|ref|ZP_07592222.1| DNA ligase, NAD-dependent [Escherichia coli W]
gi|309794543|ref|ZP_07688966.1| DNA ligase, NAD-dependent [Escherichia coli MS 145-7]
gi|331669152|ref|ZP_08370000.1| DNA ligase, NAD-dependent [Escherichia coli TA271]
gi|331678399|ref|ZP_08379074.1| DNA ligase, NAD-dependent [Escherichia coli H591]
gi|332278439|ref|ZP_08390852.1| NAD-dependent DNA ligase LigA [Shigella sp. D9]
gi|378712122|ref|YP_005277015.1| NAD-dependent DNA ligase [Escherichia coli KO11FL]
gi|386609819|ref|YP_006125305.1| DNA ligase, NAD(+)-dependent [Escherichia coli W]
gi|386700639|ref|YP_006164476.1| NAD-dependent DNA ligase LigA [Escherichia coli KO11FL]
gi|386710308|ref|YP_006174029.1| NAD-dependent DNA ligase LigA [Escherichia coli W]
gi|407470310|ref|YP_006783247.1| NAD-dependent DNA ligase LigA [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407481028|ref|YP_006778177.1| NAD-dependent DNA ligase LigA [Escherichia coli O104:H4 str.
2011C-3493]
gi|410481595|ref|YP_006769141.1| NAD-dependent DNA ligase LigA [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415784366|ref|ZP_11492236.1| DNA ligase, NAD-dependent [Escherichia coli EPECa14]
gi|415803532|ref|ZP_11500577.1| DNA ligase, NAD-dependent [Escherichia coli E128010]
gi|415822530|ref|ZP_11511158.1| DNA ligase, NAD-dependent [Escherichia coli OK1180]
gi|415828863|ref|ZP_11515295.1| DNA ligase, NAD-dependent [Escherichia coli OK1357]
gi|415862355|ref|ZP_11535821.1| DNA ligase, NAD-dependent [Escherichia coli MS 85-1]
gi|415873930|ref|ZP_11541072.1| DNA ligase, NAD-dependent [Escherichia coli MS 79-10]
gi|416343942|ref|ZP_11677842.1| DNA ligase [Escherichia coli EC4100B]
gi|417134639|ref|ZP_11979424.1| DNA ligase (NAD+) [Escherichia coli 5.0588]
gi|417146309|ref|ZP_11987267.1| DNA ligase (NAD+) [Escherichia coli 1.2264]
gi|417155786|ref|ZP_11993915.1| DNA ligase (NAD+) [Escherichia coli 96.0497]
gi|417163761|ref|ZP_11998949.1| DNA ligase (NAD+) [Escherichia coli 99.0741]
gi|417173391|ref|ZP_12003187.1| DNA ligase (NAD+) [Escherichia coli 3.2608]
gi|417185157|ref|ZP_12010653.1| DNA ligase (NAD+) [Escherichia coli 93.0624]
gi|417189078|ref|ZP_12012636.1| DNA ligase (NAD+) [Escherichia coli 4.0522]
gi|417207842|ref|ZP_12020063.1| DNA ligase (NAD+) [Escherichia coli JB1-95]
gi|417220839|ref|ZP_12024279.1| DNA ligase (NAD+) [Escherichia coli 96.154]
gi|417231950|ref|ZP_12033348.1| DNA ligase (NAD+) [Escherichia coli 5.0959]
gi|417251867|ref|ZP_12043632.1| DNA ligase (NAD+) [Escherichia coli 4.0967]
gi|417269612|ref|ZP_12056972.1| DNA ligase (NAD+) [Escherichia coli 3.3884]
gi|417299667|ref|ZP_12086894.1| DNA ligase (NAD+) [Escherichia coli 900105 (10e)]
gi|417581915|ref|ZP_12232717.1| DNA ligase, NAD-dependent [Escherichia coli STEC_B2F1]
gi|417592748|ref|ZP_12243443.1| DNA ligase, NAD-dependent [Escherichia coli 2534-86]
gi|417609036|ref|ZP_12259539.1| DNA ligase, NAD-dependent [Escherichia coli STEC_DG131-3]
gi|417624361|ref|ZP_12274660.1| DNA ligase, NAD-dependent [Escherichia coli STEC_H.1.8]
gi|417640151|ref|ZP_12290292.1| DNA ligase, NAD-dependent [Escherichia coli TX1999]
gi|417667811|ref|ZP_12317356.1| DNA ligase, NAD-dependent [Escherichia coli STEC_O31]
gi|417805964|ref|ZP_12452910.1| NAD-dependent DNA ligase LigA [Escherichia coli O104:H4 str.
LB226692]
gi|417833708|ref|ZP_12480155.1| NAD-dependent DNA ligase LigA [Escherichia coli O104:H4 str.
01-09591]
gi|417863248|ref|ZP_12508296.1| hypothetical protein C22711_0181 [Escherichia coli O104:H4 str.
C227-11]
gi|418041697|ref|ZP_12679915.1| DNA ligase, NAD-dependent [Escherichia coli W26]
gi|418941729|ref|ZP_13495045.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H43 str. T22]
gi|419171077|ref|ZP_13714963.1| DNA ligase, NAD-dependent [Escherichia coli DEC7A]
gi|419181709|ref|ZP_13725322.1| DNA ligase, NAD-dependent [Escherichia coli DEC7C]
gi|419187155|ref|ZP_13730669.1| DNA ligase, NAD-dependent [Escherichia coli DEC7D]
gi|419192447|ref|ZP_13735900.1| DNA ligase, NAD-dependent [Escherichia coli DEC7E]
gi|419197911|ref|ZP_13741297.1| DNA ligase, NAD-dependent [Escherichia coli DEC8A]
gi|419204517|ref|ZP_13747697.1| DNA ligase, NAD-dependent [Escherichia coli DEC8B]
gi|419210636|ref|ZP_13753713.1| DNA ligase, NAD-dependent [Escherichia coli DEC8C]
gi|419216504|ref|ZP_13759503.1| DNA ligase, NAD-dependent [Escherichia coli DEC8D]
gi|419222421|ref|ZP_13765342.1| DNA ligase, NAD-dependent [Escherichia coli DEC8E]
gi|419227749|ref|ZP_13770600.1| DNA ligase, NAD-dependent [Escherichia coli DEC9A]
gi|419233445|ref|ZP_13776220.1| DNA ligase, NAD-dependent [Escherichia coli DEC9B]
gi|419238762|ref|ZP_13781477.1| DNA ligase, NAD-dependent [Escherichia coli DEC9C]
gi|419244241|ref|ZP_13786879.1| DNA ligase, NAD-dependent [Escherichia coli DEC9D]
gi|419250067|ref|ZP_13792646.1| DNA ligase, NAD-dependent [Escherichia coli DEC9E]
gi|419255891|ref|ZP_13798404.1| DNA ligase, NAD-dependent [Escherichia coli DEC10A]
gi|419262146|ref|ZP_13804561.1| DNA ligase, NAD-dependent [Escherichia coli DEC10B]
gi|419267952|ref|ZP_13810304.1| DNA ligase, NAD-dependent [Escherichia coli DEC10C]
gi|419273641|ref|ZP_13815936.1| DNA ligase, NAD-dependent [Escherichia coli DEC10D]
gi|419285111|ref|ZP_13827282.1| DNA ligase, NAD-dependent [Escherichia coli DEC10F]
gi|419290336|ref|ZP_13832428.1| DNA ligase, NAD-dependent [Escherichia coli DEC11A]
gi|419295667|ref|ZP_13837712.1| DNA ligase, NAD-dependent [Escherichia coli DEC11B]
gi|419301126|ref|ZP_13843125.1| DNA ligase, NAD-dependent [Escherichia coli DEC11C]
gi|419307257|ref|ZP_13849156.1| DNA ligase, NAD-dependent [Escherichia coli DEC11D]
gi|419312264|ref|ZP_13854126.1| DNA ligase, NAD-dependent [Escherichia coli DEC11E]
gi|419317698|ref|ZP_13859500.1| DNA ligase, NAD-dependent [Escherichia coli DEC12A]
gi|419323853|ref|ZP_13865546.1| DNA ligase, NAD-dependent [Escherichia coli DEC12B]
gi|419329826|ref|ZP_13871430.1| DNA ligase, NAD-dependent [Escherichia coli DEC12C]
gi|419335467|ref|ZP_13876993.1| DNA ligase, NAD-dependent [Escherichia coli DEC12D]
gi|419346058|ref|ZP_13887432.1| DNA ligase, NAD-dependent [Escherichia coli DEC13A]
gi|419350519|ref|ZP_13891856.1| DNA ligase, NAD-dependent [Escherichia coli DEC13B]
gi|419355943|ref|ZP_13897200.1| DNA ligase, NAD-dependent [Escherichia coli DEC13C]
gi|419361035|ref|ZP_13902252.1| DNA ligase, NAD-dependent [Escherichia coli DEC13D]
gi|419366033|ref|ZP_13907194.1| DNA ligase, NAD-dependent [Escherichia coli DEC13E]
gi|419370896|ref|ZP_13912015.1| DNA ligase, NAD-dependent [Escherichia coli DEC14A]
gi|419392531|ref|ZP_13933338.1| DNA ligase, NAD-dependent [Escherichia coli DEC15A]
gi|419397518|ref|ZP_13938286.1| DNA ligase, NAD-dependent [Escherichia coli DEC15B]
gi|419402859|ref|ZP_13943583.1| DNA ligase, NAD-dependent [Escherichia coli DEC15C]
gi|419407979|ref|ZP_13948668.1| DNA ligase, NAD-dependent [Escherichia coli DEC15D]
gi|419413568|ref|ZP_13954220.1| DNA ligase, NAD-dependent [Escherichia coli DEC15E]
gi|419807712|ref|ZP_14332742.1| DNA ligase, NAD-dependent [Escherichia coli AI27]
gi|419866085|ref|ZP_14388456.1| NAD-dependent DNA ligase LigA [Escherichia coli O103:H25 str.
CVM9340]
gi|419878932|ref|ZP_14400387.1| NAD-dependent DNA ligase LigA [Escherichia coli O111:H11 str.
CVM9534]
gi|419879827|ref|ZP_14401250.1| NAD-dependent DNA ligase LigA [Escherichia coli O111:H11 str.
CVM9545]
gi|419890698|ref|ZP_14410906.1| NAD-dependent DNA ligase LigA [Escherichia coli O111:H8 str.
CVM9570]
gi|419897003|ref|ZP_14416610.1| NAD-dependent DNA ligase LigA [Escherichia coli O111:H8 str.
CVM9574]
gi|419898803|ref|ZP_14418340.1| NAD-dependent DNA ligase LigA [Escherichia coli O26:H11 str.
CVM9942]
gi|419911251|ref|ZP_14429745.1| NAD-dependent DNA ligase [Escherichia coli O26:H11 str. CVM10026]
gi|419922947|ref|ZP_14440924.1| NAD-dependent DNA ligase LigA [Escherichia coli 541-15]
gi|419931089|ref|ZP_14448678.1| NAD-dependent DNA ligase LigA [Escherichia coli 541-1]
gi|419950753|ref|ZP_14466961.1| NAD-dependent DNA ligase LigA [Escherichia coli CUMT8]
gi|420087321|ref|ZP_14599291.1| NAD-dependent DNA ligase LigA [Escherichia coli O111:H8 str.
CVM9602]
gi|420096047|ref|ZP_14607493.1| NAD-dependent DNA ligase LigA [Escherichia coli O111:H8 str.
CVM9634]
gi|420104417|ref|ZP_14615109.1| NAD-dependent DNA ligase LigA [Escherichia coli O111:H11 str.
CVM9455]
gi|420106153|ref|ZP_14616574.1| NAD-dependent DNA ligase LigA [Escherichia coli O111:H11 str.
CVM9553]
gi|420112772|ref|ZP_14622559.1| NAD-dependent DNA ligase LigA [Escherichia coli O26:H11 str.
CVM10021]
gi|420119114|ref|ZP_14628412.1| NAD-dependent DNA ligase LigA [Escherichia coli O26:H11 str.
CVM10030]
gi|420124725|ref|ZP_14633572.1| NAD-dependent DNA ligase LigA [Escherichia coli O26:H11 str.
CVM10224]
gi|420134618|ref|ZP_14642723.1| NAD-dependent DNA ligase LigA [Escherichia coli O26:H11 str.
CVM9952]
gi|420337109|ref|ZP_14838677.1| DNA ligase, NAD-dependent [Shigella flexneri K-315]
gi|420353790|ref|ZP_14854895.1| DNA ligase, NAD-dependent [Shigella boydii 4444-74]
gi|420386461|ref|ZP_14885810.1| DNA ligase, NAD-dependent [Escherichia coli EPECa12]
gi|420392153|ref|ZP_14891404.1| DNA ligase, NAD-dependent [Escherichia coli EPEC C342-62]
gi|421683483|ref|ZP_16123277.1| DNA ligase, NAD-dependent [Shigella flexneri 1485-80]
gi|422351791|ref|ZP_16432596.1| DNA ligase, NAD-dependent [Escherichia coli MS 117-3]
gi|422762052|ref|ZP_16815809.1| DNA ligase [Escherichia coli E1167]
gi|422777671|ref|ZP_16831323.1| DNA ligase [Escherichia coli H120]
gi|422956210|ref|ZP_16968684.1| DNA ligase [Escherichia coli H494]
gi|422988541|ref|ZP_16979314.1| DNA ligase [Escherichia coli O104:H4 str. C227-11]
gi|422995433|ref|ZP_16986197.1| DNA ligase [Escherichia coli O104:H4 str. C236-11]
gi|423000578|ref|ZP_16991332.1| DNA ligase [Escherichia coli O104:H4 str. 09-7901]
gi|423004250|ref|ZP_16994996.1| DNA ligase [Escherichia coli O104:H4 str. 04-8351]
gi|423010750|ref|ZP_17001484.1| DNA ligase [Escherichia coli O104:H4 str. 11-3677]
gi|423019977|ref|ZP_17010686.1| DNA ligase [Escherichia coli O104:H4 str. 11-4404]
gi|423025144|ref|ZP_17015841.1| DNA ligase [Escherichia coli O104:H4 str. 11-4522]
gi|423030964|ref|ZP_17021652.1| DNA ligase [Escherichia coli O104:H4 str. 11-4623]
gi|423038790|ref|ZP_17029464.1| DNA ligase [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423043910|ref|ZP_17034577.1| DNA ligase [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423045638|ref|ZP_17036298.1| DNA ligase [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423054177|ref|ZP_17042984.1| DNA ligase [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423061152|ref|ZP_17049948.1| DNA ligase [Escherichia coli O104:H4 str. 11-4632 C5]
gi|423706485|ref|ZP_17680868.1| DNA ligase [Escherichia coli B799]
gi|424754353|ref|ZP_18182267.1| NAD-dependent DNA ligase LigA [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424762271|ref|ZP_18189790.1| NAD-dependent DNA ligase LigA [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424772160|ref|ZP_18199275.1| NAD-dependent DNA ligase LigA [Escherichia coli O111:H8 str.
CFSAN001632]
gi|425289551|ref|ZP_18680391.1| DNA ligase, NAD-dependent [Escherichia coli 3006]
gi|425380532|ref|ZP_18764550.1| DNA ligase, NAD-dependent [Escherichia coli EC1865]
gi|425423259|ref|ZP_18804427.1| DNA ligase, NAD-dependent [Escherichia coli 0.1288]
gi|427805594|ref|ZP_18972661.1| DNA ligase [Escherichia coli chi7122]
gi|427810090|ref|ZP_18977155.1| DNA ligase [Escherichia coli]
gi|429720005|ref|ZP_19254934.1| DNA ligase [Escherichia coli O104:H4 str. Ec11-9450]
gi|429771906|ref|ZP_19303927.1| DNA ligase [Escherichia coli O104:H4 str. 11-02030]
gi|429776851|ref|ZP_19308827.1| DNA ligase [Escherichia coli O104:H4 str. 11-02033-1]
gi|429785578|ref|ZP_19317474.1| DNA ligase [Escherichia coli O104:H4 str. 11-02092]
gi|429791468|ref|ZP_19323323.1| DNA ligase [Escherichia coli O104:H4 str. 11-02093]
gi|429792316|ref|ZP_19324166.1| DNA ligase [Escherichia coli O104:H4 str. 11-02281]
gi|429798892|ref|ZP_19330691.1| DNA ligase [Escherichia coli O104:H4 str. 11-02318]
gi|429807405|ref|ZP_19339130.1| DNA ligase [Escherichia coli O104:H4 str. 11-02913]
gi|429812305|ref|ZP_19343989.1| DNA ligase [Escherichia coli O104:H4 str. 11-03439]
gi|429817826|ref|ZP_19349465.1| DNA ligase [Escherichia coli O104:H4 str. 11-04080]
gi|429823038|ref|ZP_19354633.1| DNA ligase [Escherichia coli O104:H4 str. 11-03943]
gi|429904412|ref|ZP_19370391.1| DNA ligase [Escherichia coli O104:H4 str. Ec11-9990]
gi|429908551|ref|ZP_19374515.1| DNA ligase [Escherichia coli O104:H4 str. Ec11-9941]
gi|429914422|ref|ZP_19380370.1| DNA ligase [Escherichia coli O104:H4 str. Ec11-4984]
gi|429919452|ref|ZP_19385384.1| DNA ligase [Escherichia coli O104:H4 str. Ec11-5604]
gi|429925272|ref|ZP_19391186.1| DNA ligase [Escherichia coli O104:H4 str. Ec11-4986]
gi|429929209|ref|ZP_19395111.1| DNA ligase [Escherichia coli O104:H4 str. Ec11-4987]
gi|429935748|ref|ZP_19401634.1| DNA ligase [Escherichia coli O104:H4 str. Ec11-4988]
gi|429941428|ref|ZP_19407302.1| DNA ligase [Escherichia coli O104:H4 str. Ec11-5603]
gi|429944108|ref|ZP_19409971.1| DNA ligase [Escherichia coli O104:H4 str. Ec11-6006]
gi|429951667|ref|ZP_19417513.1| DNA ligase [Escherichia coli O104:H4 str. Ec12-0465]
gi|429955016|ref|ZP_19420848.1| DNA ligase [Escherichia coli O104:H4 str. Ec12-0466]
gi|432370637|ref|ZP_19613722.1| DNA ligase [Escherichia coli KTE10]
gi|432377624|ref|ZP_19620613.1| DNA ligase [Escherichia coli KTE12]
gi|432481765|ref|ZP_19723720.1| DNA ligase [Escherichia coli KTE210]
gi|432486197|ref|ZP_19728112.1| DNA ligase [Escherichia coli KTE212]
gi|432527178|ref|ZP_19764270.1| DNA ligase [Escherichia coli KTE233]
gi|432661624|ref|ZP_19897265.1| DNA ligase [Escherichia coli KTE111]
gi|432671519|ref|ZP_19907047.1| DNA ligase [Escherichia coli KTE119]
gi|432750860|ref|ZP_19985463.1| DNA ligase [Escherichia coli KTE29]
gi|432765773|ref|ZP_20000211.1| DNA ligase [Escherichia coli KTE48]
gi|432810081|ref|ZP_20043974.1| DNA ligase [Escherichia coli KTE101]
gi|432832472|ref|ZP_20066044.1| DNA ligase [Escherichia coli KTE135]
gi|432835368|ref|ZP_20068906.1| DNA ligase [Escherichia coli KTE136]
gi|432968493|ref|ZP_20157407.1| DNA ligase [Escherichia coli KTE203]
gi|433092771|ref|ZP_20279036.1| DNA ligase [Escherichia coli KTE138]
gi|433130955|ref|ZP_20316390.1| DNA ligase [Escherichia coli KTE163]
gi|433135623|ref|ZP_20320964.1| DNA ligase [Escherichia coli KTE166]
gi|433174317|ref|ZP_20358839.1| DNA ligase [Escherichia coli KTE232]
gi|443618467|ref|YP_007382323.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O78]
gi|450219260|ref|ZP_21896098.1| NAD-dependent DNA ligase LigA [Escherichia coli O08]
gi|190359253|sp|A7ZPL2.1|DNLJ_ECO24 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|254781319|sp|B7LCF6.1|DNLJ_ECO55 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|254781323|sp|B7M6S1.1|DNLJ_ECO8A RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|254781327|sp|B6I4Y8.1|DNLJ_ECOSE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|157078130|gb|ABV17838.1| DNA ligase, NAD-dependent [Escherichia coli E24377A]
gi|192925627|gb|EDV80294.1| DNA ligase, NAD-dependent [Escherichia coli E22]
gi|194411494|gb|EDX27836.1| DNA ligase, NAD-dependent [Escherichia coli B171]
gi|209913152|dbj|BAG78226.1| DNA ligase [Escherichia coli SE11]
gi|218352779|emb|CAU98567.1| DNA ligase, NAD(+)-dependent [Escherichia coli 55989]
gi|218361712|emb|CAQ99309.1| DNA ligase, NAD(+)-dependent [Escherichia coli IAI1]
gi|257755162|dbj|BAI26664.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O26:H11 str.
11368]
gi|257760199|dbj|BAI31696.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O103:H2 str.
12009]
gi|257765464|dbj|BAI36959.1| DNA ligase LigA, NAD(+)-dependent [Escherichia coli O111:H- str.
11128]
gi|291323602|gb|EFE63030.1| DNA ligase [Escherichia coli B088]
gi|300404835|gb|EFJ88373.1| DNA ligase, NAD-dependent [Escherichia coli MS 84-1]
gi|300411729|gb|EFJ95039.1| DNA ligase, NAD-dependent [Escherichia coli MS 115-1]
gi|300526674|gb|EFK47743.1| DNA ligase, NAD-dependent [Escherichia coli MS 119-7]
gi|300529975|gb|EFK51037.1| DNA ligase, NAD-dependent [Escherichia coli MS 107-1]
gi|300838493|gb|EFK66253.1| DNA ligase, NAD-dependent [Escherichia coli MS 124-1]
gi|300844712|gb|EFK72472.1| DNA ligase, NAD-dependent [Escherichia coli MS 78-1]
gi|306907512|gb|EFN38016.1| DNA ligase, NAD-dependent [Escherichia coli W]
gi|308121999|gb|EFO59261.1| DNA ligase, NAD-dependent [Escherichia coli MS 145-7]
gi|315061736|gb|ADT76063.1| DNA ligase, NAD(+)-dependent [Escherichia coli W]
gi|315256427|gb|EFU36395.1| DNA ligase, NAD-dependent [Escherichia coli MS 85-1]
gi|320199974|gb|EFW74563.1| DNA ligase [Escherichia coli EC4100B]
gi|323156318|gb|EFZ42476.1| DNA ligase, NAD-dependent [Escherichia coli EPECa14]
gi|323159458|gb|EFZ45441.1| DNA ligase, NAD-dependent [Escherichia coli E128010]
gi|323177463|gb|EFZ63051.1| DNA ligase, NAD-dependent [Escherichia coli OK1180]
gi|323184284|gb|EFZ69660.1| DNA ligase, NAD-dependent [Escherichia coli OK1357]
gi|323377683|gb|ADX49951.1| DNA ligase, NAD-dependent [Escherichia coli KO11FL]
gi|323944634|gb|EGB40701.1| DNA ligase [Escherichia coli H120]
gi|324020175|gb|EGB89394.1| DNA ligase, NAD-dependent [Escherichia coli MS 117-3]
gi|324118125|gb|EGC12023.1| DNA ligase [Escherichia coli E1167]
gi|331064346|gb|EGI36257.1| DNA ligase, NAD-dependent [Escherichia coli TA271]
gi|331074859|gb|EGI46179.1| DNA ligase, NAD-dependent [Escherichia coli H591]
gi|332100791|gb|EGJ04137.1| NAD-dependent DNA ligase LigA [Shigella sp. D9]
gi|340733352|gb|EGR62483.1| NAD-dependent DNA ligase LigA [Escherichia coli O104:H4 str.
01-09591]
gi|340739259|gb|EGR73494.1| NAD-dependent DNA ligase LigA [Escherichia coli O104:H4 str.
LB226692]
gi|341916537|gb|EGT66154.1| hypothetical protein C22711_0181 [Escherichia coli O104:H4 str.
C227-11]
gi|342930378|gb|EGU99100.1| DNA ligase, NAD-dependent [Escherichia coli MS 79-10]
gi|345336923|gb|EGW69356.1| DNA ligase, NAD-dependent [Escherichia coli 2534-86]
gi|345337686|gb|EGW70118.1| DNA ligase, NAD-dependent [Escherichia coli STEC_B2F1]
gi|345358245|gb|EGW90433.1| DNA ligase, NAD-dependent [Escherichia coli STEC_DG131-3]
gi|345377322|gb|EGX09254.1| DNA ligase, NAD-dependent [Escherichia coli STEC_H.1.8]
gi|345393153|gb|EGX22931.1| DNA ligase, NAD-dependent [Escherichia coli TX1999]
gi|354862268|gb|EHF22706.1| DNA ligase [Escherichia coli O104:H4 str. C236-11]
gi|354867552|gb|EHF27974.1| DNA ligase [Escherichia coli O104:H4 str. C227-11]
gi|354868653|gb|EHF29066.1| DNA ligase [Escherichia coli O104:H4 str. 04-8351]
gi|354873549|gb|EHF33926.1| DNA ligase [Escherichia coli O104:H4 str. 09-7901]
gi|354880233|gb|EHF40569.1| DNA ligase [Escherichia coli O104:H4 str. 11-3677]
gi|354889657|gb|EHF49906.1| DNA ligase [Escherichia coli O104:H4 str. 11-4404]
gi|354893252|gb|EHF53456.1| DNA ligase [Escherichia coli O104:H4 str. 11-4522]
gi|354894203|gb|EHF54399.1| DNA ligase [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354896995|gb|EHF57156.1| DNA ligase [Escherichia coli O104:H4 str. 11-4623]
gi|354898359|gb|EHF58513.1| DNA ligase [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354912127|gb|EHF72128.1| DNA ligase [Escherichia coli O104:H4 str. 11-4632 C5]
gi|354915083|gb|EHF75063.1| DNA ligase [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354917317|gb|EHF77283.1| DNA ligase [Escherichia coli O104:H4 str. 11-4632 C4]
gi|371600242|gb|EHN89018.1| DNA ligase [Escherichia coli H494]
gi|375322955|gb|EHS68684.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H43 str. T22]
gi|378015121|gb|EHV78018.1| DNA ligase, NAD-dependent [Escherichia coli DEC7A]
gi|378023342|gb|EHV86019.1| DNA ligase, NAD-dependent [Escherichia coli DEC7C]
gi|378029147|gb|EHV91763.1| DNA ligase, NAD-dependent [Escherichia coli DEC7D]
gi|378038511|gb|EHW01026.1| DNA ligase, NAD-dependent [Escherichia coli DEC7E]
gi|378046468|gb|EHW08847.1| DNA ligase, NAD-dependent [Escherichia coli DEC8A]
gi|378047638|gb|EHW10000.1| DNA ligase, NAD-dependent [Escherichia coli DEC8B]
gi|378053332|gb|EHW15632.1| DNA ligase, NAD-dependent [Escherichia coli DEC8C]
gi|378060695|gb|EHW22883.1| DNA ligase, NAD-dependent [Escherichia coli DEC8D]
gi|378064996|gb|EHW27146.1| DNA ligase, NAD-dependent [Escherichia coli DEC8E]
gi|378073147|gb|EHW35200.1| DNA ligase, NAD-dependent [Escherichia coli DEC9A]
gi|378076504|gb|EHW38508.1| DNA ligase, NAD-dependent [Escherichia coli DEC9B]
gi|378083801|gb|EHW45732.1| DNA ligase, NAD-dependent [Escherichia coli DEC9C]
gi|378090177|gb|EHW52017.1| DNA ligase, NAD-dependent [Escherichia coli DEC9D]
gi|378094042|gb|EHW55844.1| DNA ligase, NAD-dependent [Escherichia coli DEC9E]
gi|378099357|gb|EHW61063.1| DNA ligase, NAD-dependent [Escherichia coli DEC10A]
gi|378105366|gb|EHW67012.1| DNA ligase, NAD-dependent [Escherichia coli DEC10B]
gi|378110603|gb|EHW72197.1| DNA ligase, NAD-dependent [Escherichia coli DEC10C]
gi|378116128|gb|EHW77661.1| DNA ligase, NAD-dependent [Escherichia coli DEC10D]
gi|378130137|gb|EHW91507.1| DNA ligase, NAD-dependent [Escherichia coli DEC11A]
gi|378130455|gb|EHW91819.1| DNA ligase, NAD-dependent [Escherichia coli DEC10F]
gi|378141509|gb|EHX02725.1| DNA ligase, NAD-dependent [Escherichia coli DEC11B]
gi|378148240|gb|EHX09380.1| DNA ligase, NAD-dependent [Escherichia coli DEC11D]
gi|378150742|gb|EHX11857.1| DNA ligase, NAD-dependent [Escherichia coli DEC11C]
gi|378157892|gb|EHX18923.1| DNA ligase, NAD-dependent [Escherichia coli DEC11E]
gi|378164929|gb|EHX25870.1| DNA ligase, NAD-dependent [Escherichia coli DEC12B]
gi|378168391|gb|EHX29295.1| DNA ligase, NAD-dependent [Escherichia coli DEC12A]
gi|378170142|gb|EHX31028.1| DNA ligase, NAD-dependent [Escherichia coli DEC12C]
gi|378181346|gb|EHX42018.1| DNA ligase, NAD-dependent [Escherichia coli DEC12D]
gi|378185506|gb|EHX46131.1| DNA ligase, NAD-dependent [Escherichia coli DEC13A]
gi|378199780|gb|EHX60239.1| DNA ligase, NAD-dependent [Escherichia coli DEC13B]
gi|378200205|gb|EHX60661.1| DNA ligase, NAD-dependent [Escherichia coli DEC13C]
gi|378202682|gb|EHX63109.1| DNA ligase, NAD-dependent [Escherichia coli DEC13D]
gi|378212342|gb|EHX72665.1| DNA ligase, NAD-dependent [Escherichia coli DEC13E]
gi|378217490|gb|EHX77769.1| DNA ligase, NAD-dependent [Escherichia coli DEC14A]
gi|378236725|gb|EHX96764.1| DNA ligase, NAD-dependent [Escherichia coli DEC15A]
gi|378243639|gb|EHY03585.1| DNA ligase, NAD-dependent [Escherichia coli DEC15B]
gi|378247393|gb|EHY07312.1| DNA ligase, NAD-dependent [Escherichia coli DEC15C]
gi|378254358|gb|EHY14222.1| DNA ligase, NAD-dependent [Escherichia coli DEC15D]
gi|378259000|gb|EHY18816.1| DNA ligase, NAD-dependent [Escherichia coli DEC15E]
gi|383392166|gb|AFH17124.1| NAD-dependent DNA ligase LigA [Escherichia coli KO11FL]
gi|383406000|gb|AFH12243.1| NAD-dependent DNA ligase LigA [Escherichia coli W]
gi|383475391|gb|EID67352.1| DNA ligase, NAD-dependent [Escherichia coli W26]
gi|384469283|gb|EIE53464.1| DNA ligase, NAD-dependent [Escherichia coli AI27]
gi|385711450|gb|EIG48408.1| DNA ligase [Escherichia coli B799]
gi|386152493|gb|EIH03782.1| DNA ligase (NAD+) [Escherichia coli 5.0588]
gi|386163761|gb|EIH25556.1| DNA ligase (NAD+) [Escherichia coli 1.2264]
gi|386168875|gb|EIH35391.1| DNA ligase (NAD+) [Escherichia coli 96.0497]
gi|386172986|gb|EIH45000.1| DNA ligase (NAD+) [Escherichia coli 99.0741]
gi|386176083|gb|EIH53562.1| DNA ligase (NAD+) [Escherichia coli 3.2608]
gi|386183219|gb|EIH65970.1| DNA ligase (NAD+) [Escherichia coli 93.0624]
gi|386192623|gb|EIH81347.1| DNA ligase (NAD+) [Escherichia coli 4.0522]
gi|386197156|gb|EIH91364.1| DNA ligase (NAD+) [Escherichia coli JB1-95]
gi|386200641|gb|EIH99631.1| DNA ligase (NAD+) [Escherichia coli 96.154]
gi|386204949|gb|EII09460.1| DNA ligase (NAD+) [Escherichia coli 5.0959]
gi|386218716|gb|EII35199.1| DNA ligase (NAD+) [Escherichia coli 4.0967]
gi|386228417|gb|EII55773.1| DNA ligase (NAD+) [Escherichia coli 3.3884]
gi|386256502|gb|EIJ11996.1| DNA ligase (NAD+) [Escherichia coli 900105 (10e)]
gi|388333596|gb|EIL00222.1| NAD-dependent DNA ligase LigA [Escherichia coli O111:H11 str.
CVM9534]
gi|388336266|gb|EIL02813.1| NAD-dependent DNA ligase LigA [Escherichia coli O103:H25 str.
CVM9340]
gi|388352849|gb|EIL17933.1| NAD-dependent DNA ligase LigA [Escherichia coli O111:H8 str.
CVM9570]
gi|388356184|gb|EIL20965.1| NAD-dependent DNA ligase LigA [Escherichia coli O111:H8 str.
CVM9574]
gi|388369805|gb|EIL33376.1| NAD-dependent DNA ligase [Escherichia coli O26:H11 str. CVM10026]
gi|388370594|gb|EIL34114.1| NAD-dependent DNA ligase LigA [Escherichia coli O111:H11 str.
CVM9545]
gi|388381096|gb|EIL43673.1| NAD-dependent DNA ligase LigA [Escherichia coli O26:H11 str.
CVM9942]
gi|388394972|gb|EIL56209.1| NAD-dependent DNA ligase LigA [Escherichia coli 541-15]
gi|388399030|gb|EIL59839.1| NAD-dependent DNA ligase LigA [Escherichia coli 541-1]
gi|388416150|gb|EIL76047.1| NAD-dependent DNA ligase LigA [Escherichia coli CUMT8]
gi|391260316|gb|EIQ19375.1| DNA ligase, NAD-dependent [Shigella flexneri K-315]
gi|391277713|gb|EIQ36445.1| DNA ligase, NAD-dependent [Shigella boydii 4444-74]
gi|391304748|gb|EIQ62550.1| DNA ligase, NAD-dependent [Escherichia coli EPECa12]
gi|391311920|gb|EIQ69543.1| DNA ligase, NAD-dependent [Escherichia coli EPEC C342-62]
gi|394390652|gb|EJE67622.1| NAD-dependent DNA ligase LigA [Escherichia coli O111:H8 str.
CVM9634]
gi|394393192|gb|EJE69881.1| NAD-dependent DNA ligase LigA [Escherichia coli O111:H8 str.
CVM9602]
gi|394396801|gb|EJE73133.1| NAD-dependent DNA ligase LigA [Escherichia coli O26:H11 str.
CVM10224]
gi|394404001|gb|EJE79485.1| NAD-dependent DNA ligase LigA [Escherichia coli O111:H11 str.
CVM9455]
gi|394413896|gb|EJE87890.1| NAD-dependent DNA ligase LigA [Escherichia coli O26:H11 str.
CVM10021]
gi|394416902|gb|EJE90663.1| NAD-dependent DNA ligase LigA [Escherichia coli O111:H11 str.
CVM9553]
gi|394421388|gb|EJE94864.1| NAD-dependent DNA ligase LigA [Escherichia coli O26:H11 str.
CVM9952]
gi|394431924|gb|EJF04060.1| NAD-dependent DNA ligase LigA [Escherichia coli O26:H11 str.
CVM10030]
gi|397784957|gb|EJK95810.1| DNA ligase, NAD-dependent [Escherichia coli STEC_O31]
gi|404338566|gb|EJZ65012.1| DNA ligase, NAD-dependent [Shigella flexneri 1485-80]
gi|406776757|gb|AFS56181.1| NAD-dependent DNA ligase LigA [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407053325|gb|AFS73376.1| NAD-dependent DNA ligase LigA [Escherichia coli O104:H4 str.
2011C-3493]
gi|407066345|gb|AFS87392.1| NAD-dependent DNA ligase LigA [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408212926|gb|EKI37430.1| DNA ligase, NAD-dependent [Escherichia coli 3006]
gi|408295703|gb|EKJ13999.1| DNA ligase, NAD-dependent [Escherichia coli EC1865]
gi|408343151|gb|EKJ57555.1| DNA ligase, NAD-dependent [Escherichia coli 0.1288]
gi|412963776|emb|CCK47701.1| DNA ligase [Escherichia coli chi7122]
gi|412970269|emb|CCJ44914.1| DNA ligase [Escherichia coli]
gi|421933000|gb|EKT90794.1| NAD-dependent DNA ligase LigA [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421939148|gb|EKT96679.1| NAD-dependent DNA ligase LigA [Escherichia coli O111:H8 str.
CFSAN001632]
gi|421941397|gb|EKT98799.1| NAD-dependent DNA ligase LigA [Escherichia coli O111:H11 str.
CFSAN001630]
gi|429348156|gb|EKY84926.1| DNA ligase [Escherichia coli O104:H4 str. 11-02092]
gi|429358902|gb|EKY95568.1| DNA ligase [Escherichia coli O104:H4 str. 11-02030]
gi|429361233|gb|EKY97888.1| DNA ligase [Escherichia coli O104:H4 str. 11-02093]
gi|429361540|gb|EKY98193.1| DNA ligase [Escherichia coli O104:H4 str. 11-02033-1]
gi|429364180|gb|EKZ00800.1| DNA ligase [Escherichia coli O104:H4 str. 11-02318]
gi|429375029|gb|EKZ11567.1| DNA ligase [Escherichia coli O104:H4 str. 11-02913]
gi|429376186|gb|EKZ12715.1| DNA ligase [Escherichia coli O104:H4 str. 11-02281]
gi|429378495|gb|EKZ15003.1| DNA ligase [Escherichia coli O104:H4 str. 11-03439]
gi|429379359|gb|EKZ15859.1| DNA ligase [Escherichia coli O104:H4 str. 11-03943]
gi|429391062|gb|EKZ27467.1| DNA ligase [Escherichia coli O104:H4 str. 11-04080]
gi|429405426|gb|EKZ41692.1| DNA ligase [Escherichia coli O104:H4 str. Ec11-4984]
gi|429406495|gb|EKZ42753.1| DNA ligase [Escherichia coli O104:H4 str. Ec11-9990]
gi|429409867|gb|EKZ46092.1| DNA ligase [Escherichia coli O104:H4 str. Ec11-9450]
gi|429413779|gb|EKZ49959.1| DNA ligase [Escherichia coli O104:H4 str. Ec11-4987]
gi|429420557|gb|EKZ56682.1| DNA ligase [Escherichia coli O104:H4 str. Ec11-4986]
gi|429428729|gb|EKZ64804.1| DNA ligase [Escherichia coli O104:H4 str. Ec11-5604]
gi|429432282|gb|EKZ68322.1| DNA ligase [Escherichia coli O104:H4 str. Ec11-4988]
gi|429436488|gb|EKZ72504.1| DNA ligase [Escherichia coli O104:H4 str. Ec11-5603]
gi|429438693|gb|EKZ74686.1| DNA ligase [Escherichia coli O104:H4 str. Ec11-6006]
gi|429447062|gb|EKZ82986.1| DNA ligase [Escherichia coli O104:H4 str. Ec12-0465]
gi|429451315|gb|EKZ87206.1| DNA ligase [Escherichia coli O104:H4 str. Ec11-9941]
gi|429457973|gb|EKZ93811.1| DNA ligase [Escherichia coli O104:H4 str. Ec12-0466]
gi|430884441|gb|ELC07380.1| DNA ligase [Escherichia coli KTE10]
gi|430897644|gb|ELC19838.1| DNA ligase [Escherichia coli KTE12]
gi|431006287|gb|ELD21293.1| DNA ligase [Escherichia coli KTE210]
gi|431015406|gb|ELD28961.1| DNA ligase [Escherichia coli KTE212]
gi|431062998|gb|ELD72255.1| DNA ligase [Escherichia coli KTE233]
gi|431199091|gb|ELE97856.1| DNA ligase [Escherichia coli KTE111]
gi|431209801|gb|ELF07868.1| DNA ligase [Escherichia coli KTE119]
gi|431296133|gb|ELF85859.1| DNA ligase [Escherichia coli KTE29]
gi|431309948|gb|ELF98141.1| DNA ligase [Escherichia coli KTE48]
gi|431362849|gb|ELG49427.1| DNA ligase [Escherichia coli KTE101]
gi|431374750|gb|ELG60095.1| DNA ligase [Escherichia coli KTE135]
gi|431384532|gb|ELG68578.1| DNA ligase [Escherichia coli KTE136]
gi|431469909|gb|ELH49833.1| DNA ligase [Escherichia coli KTE203]
gi|431609681|gb|ELI78994.1| DNA ligase [Escherichia coli KTE138]
gi|431645752|gb|ELJ13296.1| DNA ligase [Escherichia coli KTE163]
gi|431655551|gb|ELJ22582.1| DNA ligase [Escherichia coli KTE166]
gi|431691529|gb|ELJ56987.1| DNA ligase [Escherichia coli KTE232]
gi|443422975|gb|AGC87879.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O78]
gi|449317210|gb|EMD07303.1| NAD-dependent DNA ligase LigA [Escherichia coli O08]
Length = 671
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|432869756|ref|ZP_20090349.1| DNA ligase [Escherichia coli KTE147]
gi|431410342|gb|ELG93504.1| DNA ligase [Escherichia coli KTE147]
Length = 671
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 404/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P++H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPNTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLTQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPVVINVEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|422973006|ref|ZP_16975618.1| DNA ligase [Escherichia coli TA124]
gi|371597316|gb|EHN86139.1| DNA ligase [Escherichia coli TA124]
Length = 671
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF SRA
Sbjct: 247 KAWGLPVSERVTLCETAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVSRA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|262276434|ref|ZP_06054243.1| DNA ligase [Grimontia hollisae CIP 101886]
gi|262220242|gb|EEY71558.1| DNA ligase [Grimontia hollisae CIP 101886]
Length = 670
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 272/663 (41%), Positives = 399/663 (60%), Gaps = 35/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ LK +L+ H YY+ D P + D +YD+++ EL IE K+PEL+T DS +Q VG
Sbjct: 8 KLQSLKTQLNYHGHLYYVEDKPELPDAEYDRMMQELLAIEAKHPELVTADSPSQRVGGAP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F D ++ F KR+ + L T+ + E K DG+AV+L YE
Sbjct: 68 LGAFEQVRHEIPMLSLDNAFDDGELEAFEKRLRDRLNTTERFVFSCEPKLDGLAVSLMYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG +GENIT N+ I +PL+L + P LEVR EV + K F LN+
Sbjct: 128 NGVLVQAATRGDGTVGENITHNVRTIRNVPLLLQGEGWPVRLEVRGEVFMPKDGFEALNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+PKI + L F+A+ VG + SH L
Sbjct: 188 KNIKKGEKTFANPRNAAAGSLRQLDPKITATRPLRFYAYSVG-VMSEAFGDSHVGRLEQL 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ G+ + E + G+ + +Y+ I +R +LPYEIDGVV K++ + TQ++LGF +RA
Sbjct: 247 KQWGIPLSPEVKKVDGLENVKAYYQDIAARRNDLPYEIDGVVIKVDNIDTQERLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T ++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 307 PRWAIAYKFPAQEEITVLQDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV++ R+G+VIP+I S + S RP+D+K P+ CP+C S++ +E +ARC
Sbjct: 367 LGVKIGDTVIIRRAGDVIPQIVSVVESRRPDDAKEVVFPHECPVCQSQVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK ++HFSSRKA++I GLG K++E+L+ ++ T DL+K+ + L
Sbjct: 427 TGGLI-CRAQRKEAIKHFSSRKALDIDGLGDKIVEQLIEKELIKTPADLFKLTAGQVTML 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A+ K+K TT RFIY+LGIR VGE TA LAN+F E + +ATEEQ
Sbjct: 486 DRMGPKSAQNLVDALSKAKETTLPRFIYSLGIREVGEATAANLANHFFTFEAIREATEEQ 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNPNTK------------- 601
L+ + +G K + F N+ ++ +I L GI W + P+
Sbjct: 546 LIEVQDVGVIVAKHVVNFFNEEHNKTVIDALLACGITWPAIEQPDENKPQPLAGKTVVLT 605
Query: 602 ------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +S T+ L+ G+ G KL KA +L I+I+DE +
Sbjct: 606 GTLSQMSRNDAKAALQALGAKVTGSVSAKTDLLIAGEAAGSKLTKAQQLGIEIVDEDGMM 665
Query: 644 KIV 646
+++
Sbjct: 666 RLL 668
>gi|110642595|ref|YP_670325.1| NAD-dependent DNA ligase LigA [Escherichia coli 536]
gi|191174600|ref|ZP_03036093.1| DNA ligase, NAD-dependent [Escherichia coli F11]
gi|222157137|ref|YP_002557276.1| DNA ligase [Escherichia coli LF82]
gi|300997757|ref|ZP_07181842.1| DNA ligase, NAD-dependent [Escherichia coli MS 200-1]
gi|306814500|ref|ZP_07448662.1| NAD-dependent DNA ligase LigA [Escherichia coli NC101]
gi|387617746|ref|YP_006120768.1| NAD-dependent DNA ligase LigA [Escherichia coli O83:H1 str. NRG
857C]
gi|422377575|ref|ZP_16457814.1| DNA ligase, NAD-dependent [Escherichia coli MS 60-1]
gi|432382124|ref|ZP_19625067.1| DNA ligase [Escherichia coli KTE15]
gi|432387938|ref|ZP_19630825.1| DNA ligase [Escherichia coli KTE16]
gi|432471756|ref|ZP_19713800.1| DNA ligase [Escherichia coli KTE206]
gi|432514688|ref|ZP_19751910.1| DNA ligase [Escherichia coli KTE224]
gi|432612244|ref|ZP_19848406.1| DNA ligase [Escherichia coli KTE72]
gi|432646957|ref|ZP_19882746.1| DNA ligase [Escherichia coli KTE86]
gi|432656539|ref|ZP_19892242.1| DNA ligase [Escherichia coli KTE93]
gi|432699816|ref|ZP_19934969.1| DNA ligase [Escherichia coli KTE169]
gi|432714168|ref|ZP_19949206.1| DNA ligase [Escherichia coli KTE8]
gi|432746428|ref|ZP_19981093.1| DNA ligase [Escherichia coli KTE43]
gi|432905710|ref|ZP_20114510.1| DNA ligase [Escherichia coli KTE194]
gi|432938771|ref|ZP_20137014.1| DNA ligase [Escherichia coli KTE183]
gi|432972588|ref|ZP_20161454.1| DNA ligase [Escherichia coli KTE207]
gi|432986145|ref|ZP_20174866.1| DNA ligase [Escherichia coli KTE215]
gi|433039384|ref|ZP_20226983.1| DNA ligase [Escherichia coli KTE113]
gi|433078609|ref|ZP_20265137.1| DNA ligase [Escherichia coli KTE131]
gi|433083343|ref|ZP_20269799.1| DNA ligase [Escherichia coli KTE133]
gi|433101969|ref|ZP_20288049.1| DNA ligase [Escherichia coli KTE145]
gi|433144983|ref|ZP_20330125.1| DNA ligase [Escherichia coli KTE168]
gi|433189168|ref|ZP_20373266.1| DNA ligase [Escherichia coli KTE88]
gi|122958158|sp|Q0TF55.1|DNLJ_ECOL5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|110344187|gb|ABG70424.1| DNA ligase [Escherichia coli 536]
gi|190905126|gb|EDV64772.1| DNA ligase, NAD-dependent [Escherichia coli F11]
gi|222034142|emb|CAP76883.1| DNA ligase [Escherichia coli LF82]
gi|300304141|gb|EFJ58661.1| DNA ligase, NAD-dependent [Escherichia coli MS 200-1]
gi|305851894|gb|EFM52346.1| NAD-dependent DNA ligase LigA [Escherichia coli NC101]
gi|312947007|gb|ADR27834.1| NAD-dependent DNA ligase LigA [Escherichia coli O83:H1 str. NRG
857C]
gi|324011127|gb|EGB80346.1| DNA ligase, NAD-dependent [Escherichia coli MS 60-1]
gi|430905441|gb|ELC27050.1| DNA ligase [Escherichia coli KTE16]
gi|430907599|gb|ELC29097.1| DNA ligase [Escherichia coli KTE15]
gi|430997498|gb|ELD13759.1| DNA ligase [Escherichia coli KTE206]
gi|431041074|gb|ELD51605.1| DNA ligase [Escherichia coli KTE224]
gi|431148418|gb|ELE49709.1| DNA ligase [Escherichia coli KTE72]
gi|431179612|gb|ELE79504.1| DNA ligase [Escherichia coli KTE86]
gi|431190405|gb|ELE89804.1| DNA ligase [Escherichia coli KTE93]
gi|431242792|gb|ELF37182.1| DNA ligase [Escherichia coli KTE169]
gi|431256137|gb|ELF49212.1| DNA ligase [Escherichia coli KTE8]
gi|431290966|gb|ELF81489.1| DNA ligase [Escherichia coli KTE43]
gi|431431781|gb|ELH13555.1| DNA ligase [Escherichia coli KTE194]
gi|431462757|gb|ELH42964.1| DNA ligase [Escherichia coli KTE183]
gi|431480726|gb|ELH60442.1| DNA ligase [Escherichia coli KTE207]
gi|431499039|gb|ELH78220.1| DNA ligase [Escherichia coli KTE215]
gi|431551484|gb|ELI25470.1| DNA ligase [Escherichia coli KTE113]
gi|431595733|gb|ELI65720.1| DNA ligase [Escherichia coli KTE131]
gi|431601467|gb|ELI70983.1| DNA ligase [Escherichia coli KTE133]
gi|431618248|gb|ELI87222.1| DNA ligase [Escherichia coli KTE145]
gi|431660960|gb|ELJ27817.1| DNA ligase [Escherichia coli KTE168]
gi|431705874|gb|ELJ70464.1| DNA ligase [Escherichia coli KTE88]
Length = 671
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEM 665
Query: 643 VKIV 646
+ ++
Sbjct: 666 LHLL 669
>gi|183599716|ref|ZP_02961209.1| hypothetical protein PROSTU_03219 [Providencia stuartii ATCC 25827]
gi|386741966|ref|YP_006215145.1| NAD-dependent DNA ligase LigA [Providencia stuartii MRSN 2154]
gi|188021975|gb|EDU60015.1| DNA ligase (NAD+) [Providencia stuartii ATCC 25827]
gi|384478659|gb|AFH92454.1| NAD-dependent DNA ligase LigA [Providencia stuartii MRSN 2154]
Length = 671
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 274/663 (41%), Positives = 395/663 (59%), Gaps = 36/663 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
LK++L H Y++ D P I D +YD+L+ ELK IE ++PE +T DS TQ VG
Sbjct: 10 LKQQLRHHEYQYHVLDAPEIPDAEYDKLMEELKAIEAEHPEWITSDSPTQRVGAAPLAAF 69
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
V H M+SLDN F +E + F+KR+ + LK + + ELK DG+AV+L YE G L
Sbjct: 70 DTVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKDQQEQTFCCELKLDGLAVSLLYENGEL 129
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
QA+TRGDG +GENIT+N+ I IPL L + P +E+R EV + +K F LN+
Sbjct: 130 VQAATRGDGTVGENITSNVRTIRAIPLRLTGENIPARVEIRGEVFMPQKGFEALNEEARR 189
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIG 260
G K F NPRNAAAG LRQL+P+I + L F+ +GVG + G +P +H E L ++K G
Sbjct: 190 TGGKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGETLPDTHYERLMQFKKWG 249
Query: 261 LSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFA 320
L + + +G +++FY +I R L ++IDGVV KIN ++TQ++LGF SRAPR+A
Sbjct: 250 LPVSEYVQLRTGAQAVLDFYHEIEKARPTLGFDIDGVVIKINDIATQEELGFVSRAPRWA 309
Query: 321 LAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQ 380
A+KF ++E +T +K + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R +
Sbjct: 310 TAFKFPAQEQMTLLKDVEFQVGRTGAITPVARLEPVQVAGVTVSNATLHNADEIERLGVH 369
Query: 381 IGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSW 440
IGDTVV+ R+G+VIP+I S + S RP DS+ P CP+C S + +E +ARC+G
Sbjct: 370 IGDTVVIRRAGDVIPQIVSVVESERPADSREIVFPTHCPVCGSDVERVEGEAVARCTGGL 429
Query: 441 IECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS 500
I C AQRK L+HF SR+AM++ G+G K+I++LV V DLY+++ L LDR+
Sbjct: 430 I-CGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVKNPADLYQLSAGILTGLDRMG 488
Query: 501 NKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNI 560
K A N++ A+ KSK TT +RFIYALGIR VGE TA LA ++ LE + A EE L +
Sbjct: 489 PKSAQNLVEALNKSKSTTLARFIYALGIREVGEATAANLAAHYGTLEALMAADEESLKTV 548
Query: 561 PKIGSTTVKAFIKFINQPLHRLLISQLRD-VGIYW----------LNNPNTK-------- 601
+G K + F + ++ +I L D I+W +++P
Sbjct: 549 QDVGHVVAKHVVNFFREEHNQTVIQALIDKANIHWPEAVAVDVSTIDSPFAGKTVVLTGS 608
Query: 602 ----------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
G KV +SK T+ ++ G+ G KL KA +L I ++DE +++
Sbjct: 609 LSQLTRDEAKDKLVALGAKVSGSVSKKTHLVIAGEAAGSKLAKANELGIPVIDENELIRL 668
Query: 646 VKG 648
++
Sbjct: 669 LEA 671
>gi|417140765|ref|ZP_11983876.1| DNA ligase (NAD+) [Escherichia coli 97.0259]
gi|417308858|ref|ZP_12095699.1| DNA ligase [Escherichia coli PCN033]
gi|338769486|gb|EGP24265.1| DNA ligase [Escherichia coli PCN033]
gi|386156098|gb|EIH12445.1| DNA ligase (NAD+) [Escherichia coli 97.0259]
Length = 671
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLTQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|24113756|ref|NP_708266.1| NAD-dependent DNA ligase LigA [Shigella flexneri 2a str. 301]
gi|30063805|ref|NP_837976.1| NAD-dependent DNA ligase LigA [Shigella flexneri 2a str. 2457T]
gi|110806352|ref|YP_689872.1| NAD-dependent DNA ligase LigA [Shigella flexneri 5 str. 8401]
gi|384544042|ref|YP_005728105.1| NAD-dependent DNA ligase [Shigella flexneri 2002017]
gi|415853620|ref|ZP_11529550.1| DNA ligase, NAD-dependent [Shigella flexneri 2a str. 2457T]
gi|417703204|ref|ZP_12352315.1| DNA ligase, NAD-dependent [Shigella flexneri K-218]
gi|417729328|ref|ZP_12378026.1| DNA ligase, NAD-dependent [Shigella flexneri K-671]
gi|417734189|ref|ZP_12382840.1| DNA ligase, NAD-dependent [Shigella flexneri 2747-71]
gi|424838749|ref|ZP_18263386.1| NAD-dependent DNA ligase LigA [Shigella flexneri 5a str. M90T]
gi|81723177|sp|Q83K81.1|DNLJ_SHIFL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|122366427|sp|Q0T298.1|DNLJ_SHIF8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|24052834|gb|AAN43973.1| DNA ligase [Shigella flexneri 2a str. 301]
gi|30042060|gb|AAP17786.1| DNA ligase [Shigella flexneri 2a str. 2457T]
gi|110615900|gb|ABF04567.1| DNA ligase [Shigella flexneri 5 str. 8401]
gi|281601828|gb|ADA74812.1| DNA ligase, NAD-dependent [Shigella flexneri 2002017]
gi|313650866|gb|EFS15266.1| DNA ligase, NAD-dependent [Shigella flexneri 2a str. 2457T]
gi|332755453|gb|EGJ85817.1| DNA ligase, NAD-dependent [Shigella flexneri K-671]
gi|332756263|gb|EGJ86614.1| DNA ligase, NAD-dependent [Shigella flexneri 2747-71]
gi|333002064|gb|EGK21630.1| DNA ligase, NAD-dependent [Shigella flexneri K-218]
gi|383467801|gb|EID62822.1| NAD-dependent DNA ligase LigA [Shigella flexneri 5a str. M90T]
Length = 671
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K G+ + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ KLA N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKLAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|432398338|ref|ZP_19641117.1| DNA ligase [Escherichia coli KTE25]
gi|432723904|ref|ZP_19958822.1| DNA ligase [Escherichia coli KTE17]
gi|432728486|ref|ZP_19963364.1| DNA ligase [Escherichia coli KTE18]
gi|432742122|ref|ZP_19976841.1| DNA ligase [Escherichia coli KTE23]
gi|432991489|ref|ZP_20180153.1| DNA ligase [Escherichia coli KTE217]
gi|433111648|ref|ZP_20297511.1| DNA ligase [Escherichia coli KTE150]
gi|430914586|gb|ELC35681.1| DNA ligase [Escherichia coli KTE25]
gi|431264912|gb|ELF56613.1| DNA ligase [Escherichia coli KTE17]
gi|431273038|gb|ELF64136.1| DNA ligase [Escherichia coli KTE18]
gi|431283813|gb|ELF74672.1| DNA ligase [Escherichia coli KTE23]
gi|431495571|gb|ELH75157.1| DNA ligase [Escherichia coli KTE217]
gi|431627663|gb|ELI96056.1| DNA ligase [Escherichia coli KTE150]
Length = 671
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMCELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCESAEEVLAFYHKVEKDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALG+R VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGVREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|290508381|ref|ZP_06547752.1| DNA ligase, NAD-dependent [Klebsiella sp. 1_1_55]
gi|289777775|gb|EFD85772.1| DNA ligase, NAD-dependent [Klebsiella sp. 1_1_55]
Length = 671
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 408/664 (61%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P + D +YD+L+ EL+++E ++PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T ++ Y ELK DG+AV++ YE
Sbjct: 67 LTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDDLTYCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLMQAATRGDGTTGEDITSNVRTIRTIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SHS L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHSARLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ +Y+K+ R +L ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCHTPEEVLTYYRKVEEDRPHLGFDIDGVVIKVDSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQITFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVFPTHCPVCQSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL++++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLSAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F LE + +A+ E+
Sbjct: 486 DRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAALAAHFGTLEALEQASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I+QL G++W
Sbjct: 546 LQKVPDVGIVVATHTFNFFAEESNRDVIAQLLAEGVHWPAPVVVKAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 MRLL 669
>gi|386620017|ref|YP_006139597.1| DNA ligase [Escherichia coli NA114]
gi|387830328|ref|YP_003350265.1| DNA ligase [Escherichia coli SE15]
gi|432422732|ref|ZP_19665276.1| DNA ligase [Escherichia coli KTE178]
gi|432500921|ref|ZP_19742678.1| DNA ligase [Escherichia coli KTE216]
gi|432559644|ref|ZP_19796313.1| DNA ligase [Escherichia coli KTE49]
gi|432695248|ref|ZP_19930446.1| DNA ligase [Escherichia coli KTE162]
gi|432711449|ref|ZP_19946507.1| DNA ligase [Escherichia coli KTE6]
gi|432920405|ref|ZP_20124040.1| DNA ligase [Escherichia coli KTE173]
gi|432928002|ref|ZP_20129255.1| DNA ligase [Escherichia coli KTE175]
gi|432981808|ref|ZP_20170583.1| DNA ligase [Escherichia coli KTE211]
gi|433097250|ref|ZP_20283433.1| DNA ligase [Escherichia coli KTE139]
gi|433106694|ref|ZP_20292666.1| DNA ligase [Escherichia coli KTE148]
gi|281179485|dbj|BAI55815.1| DNA ligase [Escherichia coli SE15]
gi|333970518|gb|AEG37323.1| DNA ligase [Escherichia coli NA114]
gi|430943468|gb|ELC63575.1| DNA ligase [Escherichia coli KTE178]
gi|431028498|gb|ELD41542.1| DNA ligase [Escherichia coli KTE216]
gi|431090864|gb|ELD96615.1| DNA ligase [Escherichia coli KTE49]
gi|431233336|gb|ELF28927.1| DNA ligase [Escherichia coli KTE162]
gi|431248401|gb|ELF42595.1| DNA ligase [Escherichia coli KTE6]
gi|431441607|gb|ELH22715.1| DNA ligase [Escherichia coli KTE173]
gi|431442967|gb|ELH24045.1| DNA ligase [Escherichia coli KTE175]
gi|431491117|gb|ELH70724.1| DNA ligase [Escherichia coli KTE211]
gi|431614831|gb|ELI83965.1| DNA ligase [Escherichia coli KTE139]
gi|431626402|gb|ELI94951.1| DNA ligase [Escherichia coli KTE148]
Length = 671
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCESAEEVLAFYHKVEKDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|417597713|ref|ZP_12248352.1| DNA ligase, NAD-dependent [Escherichia coli 3030-1]
gi|345352942|gb|EGW85180.1| DNA ligase, NAD-dependent [Escherichia coli 3030-1]
Length = 671
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHIHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|227328979|ref|ZP_03833003.1| NAD-dependent DNA ligase LigA [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 684
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/669 (40%), Positives = 400/669 (59%), Gaps = 38/669 (5%)
Query: 15 SFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGL 74
+ RV EL++ L H Y++ D P I D +YD+L+ ELK +E +PEL+T DS TQ VG
Sbjct: 15 ALRVAELRRVLRHHEYKYHVEDAPEIPDVEYDKLMQELKSLEAAHPELVTSDSPTQRVGA 74
Query: 75 VGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLR 134
+ V H M+SLDN F +E + F+KRI + LK ++ + ELK DG+AV+L
Sbjct: 75 APLAAFEQVRHEVPMLSLDNVFDEESYLAFSKRIGDRLKNGDDLTFCCELKLDGLAVSLL 134
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194
YE G L QA+TRGDG GENIT+NI + IPL L P +EVR EV + F KL
Sbjct: 135 YEEGVLVQAATRGDGTTGENITSNIRTVAAIPLRLEGDNIPRRVEVRGEVFMKHSGFEKL 194
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N+ G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SH E L
Sbjct: 195 NEEARRTGSKVFANPRNAAAGSLRQLDPRITATRPLTFFCYGVGLLEGGVLPASHWERLM 254
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
++ GL + + +G ++++FY+++ R +L ++IDGVV K++ L Q++LGF +
Sbjct: 255 QFKAWGLPVSDRIKLCTGPAEVLDFYRQVEQTRSSLGFDIDGVVVKVDSLELQERLGFVA 314
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+A+KF ++E LT ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI
Sbjct: 315 RAPRWAVAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVAVAGVIVSNATLHNADEI 374
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
R +QIGD V+V R+G+VIP+I + S RP + P CP+C S + +E +
Sbjct: 375 ERLGLQIGDRVIVRRAGDVIPQIVGIVESERPETVRPILFPAACPVCGSDVERVEGEAVT 434
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+ I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL++++ +
Sbjct: 435 RCTAGLI-CGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVKTPADLFRLSAGIMT 493
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
LDR+ K A N++ A++K+K TT +RF+YALGIR VGE+TA LA +F +LE +F A E
Sbjct: 494 GLDRMGPKSATNLVNALEKAKSTTLARFLYALGIRDVGESTAANLAAHFGSLEALFAADE 553
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRD---VGIYW----------LNNP--- 598
+ LL +P +G F+ + ++ +I +L D + I+W +++P
Sbjct: 554 DALLEVPDVGKVVAAHVRHFLEEEHNQTVIRELTDPAGINIHWPEVQVVNVEEIDSPFAG 613
Query: 599 ---------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
G KV +SK T+ ++ G+ G KL KA +L I ++
Sbjct: 614 KTVVLTGSLSILSRDEAKDRLTALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVI 673
Query: 638 DEKNFVKIV 646
DE ++++
Sbjct: 674 DEAEMIRLL 682
>gi|331663971|ref|ZP_08364881.1| DNA ligase, NAD-dependent [Escherichia coli TA143]
gi|331059770|gb|EGI31747.1| DNA ligase, NAD-dependent [Escherichia coli TA143]
Length = 671
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQERLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|432793606|ref|ZP_20027690.1| DNA ligase [Escherichia coli KTE78]
gi|432799565|ref|ZP_20033586.1| DNA ligase [Escherichia coli KTE79]
gi|431339269|gb|ELG26331.1| DNA ligase [Escherichia coli KTE78]
gi|431342673|gb|ELG29644.1| DNA ligase [Escherichia coli KTE79]
Length = 671
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQVGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|121587330|ref|ZP_01677101.1| DNA ligase [Vibrio cholerae 2740-80]
gi|121730035|ref|ZP_01682446.1| DNA ligase [Vibrio cholerae V52]
gi|147675693|ref|YP_001216443.1| NAD-dependent DNA ligase LigA [Vibrio cholerae O395]
gi|153818602|ref|ZP_01971269.1| DNA ligase [Vibrio cholerae NCTC 8457]
gi|227081145|ref|YP_002809696.1| NAD-dependent DNA ligase LigA [Vibrio cholerae M66-2]
gi|227117338|ref|YP_002819234.1| DNA ligase [Vibrio cholerae O395]
gi|229505430|ref|ZP_04394940.1| DNA ligase [Vibrio cholerae BX 330286]
gi|262167192|ref|ZP_06034905.1| DNA ligase [Vibrio cholerae RC27]
gi|298498912|ref|ZP_07008719.1| DNA ligase, NAD-dependent [Vibrio cholerae MAK 757]
gi|190359299|sp|A5F2W3.1|DNLJ_VIBC3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|254781449|sp|C3LTL9.1|DNLJ_VIBCM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|121548413|gb|EAX58473.1| DNA ligase [Vibrio cholerae 2740-80]
gi|121628224|gb|EAX60744.1| DNA ligase [Vibrio cholerae V52]
gi|126510828|gb|EAZ73422.1| DNA ligase [Vibrio cholerae NCTC 8457]
gi|146317576|gb|ABQ22115.1| DNA ligase [Vibrio cholerae O395]
gi|227009033|gb|ACP05245.1| DNA ligase [Vibrio cholerae M66-2]
gi|227012788|gb|ACP08998.1| DNA ligase [Vibrio cholerae O395]
gi|229357653|gb|EEO22570.1| DNA ligase [Vibrio cholerae BX 330286]
gi|262024413|gb|EEY43101.1| DNA ligase [Vibrio cholerae RC27]
gi|297543245|gb|EFH79295.1| DNA ligase, NAD-dependent [Vibrio cholerae MAK 757]
Length = 669
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 273/670 (40%), Positives = 403/670 (60%), Gaps = 34/670 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S ++ R+TEL+K LH H + YY+ D P I D +YD+L+ EL ++E +PEL++ DS +
Sbjct: 1 MSDVAQRLTELRKTLHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + V H M+SLDN F D ++ F +R+T+ ++ ++ + E K DG+A
Sbjct: 61 RVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIQAVQHSAFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYENGVLTRAATRGDGMTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL IC E +++ + ++ FY+ I +R L YEIDGVV K++ + Q++L
Sbjct: 241 QRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQFLAYEIDGVVIKVDDIQLQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTVV+ R+G+VIP+I S +L RP ++K P CP+C S + +E
Sbjct: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARCSG I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 421 EAVARCSGGLI-CQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ A+ K+K TT +F+YALGIR VG+ TA LA +F +LE +
Sbjct: 480 GELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGDATALNLAQHFLSLEAIQ 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+ EQ + +P +G + F Q ++ +I++L + GI W
Sbjct: 540 QASLEQFIEVPDVGVVVASHLLAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAG 599
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L+ + K G KV +SKNT+ + G+ G KL KA +L I++
Sbjct: 600 KIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVF 659
Query: 638 DEKNFVKIVK 647
DE+ ++ +K
Sbjct: 660 DEQALIEFLK 669
>gi|218705919|ref|YP_002413438.1| NAD-dependent DNA ligase LigA [Escherichia coli UMN026]
gi|293405854|ref|ZP_06649846.1| DNA ligase [Escherichia coli FVEC1412]
gi|298381604|ref|ZP_06991203.1| DNA ligase [Escherichia coli FVEC1302]
gi|387608066|ref|YP_006096922.1| DNA ligase [Escherichia coli 042]
gi|417587412|ref|ZP_12238181.1| DNA ligase, NAD-dependent [Escherichia coli STEC_C165-02]
gi|419933049|ref|ZP_14450320.1| NAD-dependent DNA ligase LigA [Escherichia coli 576-1]
gi|422333433|ref|ZP_16414443.1| DNA ligase [Escherichia coli 4_1_47FAA]
gi|432354329|ref|ZP_19597601.1| DNA ligase [Escherichia coli KTE2]
gi|432402679|ref|ZP_19645431.1| DNA ligase [Escherichia coli KTE26]
gi|432426944|ref|ZP_19669444.1| DNA ligase [Escherichia coli KTE181]
gi|432461410|ref|ZP_19703558.1| DNA ligase [Escherichia coli KTE204]
gi|432476634|ref|ZP_19718632.1| DNA ligase [Escherichia coli KTE208]
gi|432518459|ref|ZP_19755646.1| DNA ligase [Escherichia coli KTE228]
gi|432538581|ref|ZP_19775482.1| DNA ligase [Escherichia coli KTE235]
gi|432632175|ref|ZP_19868100.1| DNA ligase [Escherichia coli KTE80]
gi|432641890|ref|ZP_19877723.1| DNA ligase [Escherichia coli KTE83]
gi|432666785|ref|ZP_19902365.1| DNA ligase [Escherichia coli KTE116]
gi|432771367|ref|ZP_20005692.1| DNA ligase [Escherichia coli KTE50]
gi|432775481|ref|ZP_20009751.1| DNA ligase [Escherichia coli KTE54]
gi|432887370|ref|ZP_20101444.1| DNA ligase [Escherichia coli KTE158]
gi|432913594|ref|ZP_20119264.1| DNA ligase [Escherichia coli KTE190]
gi|432962653|ref|ZP_20152212.1| DNA ligase [Escherichia coli KTE202]
gi|433019468|ref|ZP_20207677.1| DNA ligase [Escherichia coli KTE105]
gi|433053998|ref|ZP_20241175.1| DNA ligase [Escherichia coli KTE122]
gi|433063854|ref|ZP_20250774.1| DNA ligase [Escherichia coli KTE125]
gi|433068701|ref|ZP_20255489.1| DNA ligase [Escherichia coli KTE128]
gi|433159433|ref|ZP_20344269.1| DNA ligase [Escherichia coli KTE177]
gi|433179246|ref|ZP_20363643.1| DNA ligase [Escherichia coli KTE82]
gi|254781326|sp|B7N602.1|DNLJ_ECOLU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|218433016|emb|CAR13911.1| DNA ligase, NAD(+)-dependent [Escherichia coli UMN026]
gi|284922366|emb|CBG35453.1| DNA ligase [Escherichia coli 042]
gi|291428062|gb|EFF01089.1| DNA ligase [Escherichia coli FVEC1412]
gi|298279046|gb|EFI20560.1| DNA ligase [Escherichia coli FVEC1302]
gi|345335442|gb|EGW67880.1| DNA ligase, NAD-dependent [Escherichia coli STEC_C165-02]
gi|373245530|gb|EHP64997.1| DNA ligase [Escherichia coli 4_1_47FAA]
gi|388414542|gb|EIL74497.1| NAD-dependent DNA ligase LigA [Escherichia coli 576-1]
gi|430874967|gb|ELB98516.1| DNA ligase [Escherichia coli KTE2]
gi|430925150|gb|ELC45823.1| DNA ligase [Escherichia coli KTE26]
gi|430955197|gb|ELC73989.1| DNA ligase [Escherichia coli KTE181]
gi|430988594|gb|ELD05082.1| DNA ligase [Escherichia coli KTE204]
gi|431005250|gb|ELD20458.1| DNA ligase [Escherichia coli KTE208]
gi|431050491|gb|ELD60238.1| DNA ligase [Escherichia coli KTE228]
gi|431069004|gb|ELD77342.1| DNA ligase [Escherichia coli KTE235]
gi|431169753|gb|ELE69968.1| DNA ligase [Escherichia coli KTE80]
gi|431181345|gb|ELE81212.1| DNA ligase [Escherichia coli KTE83]
gi|431200562|gb|ELE99286.1| DNA ligase [Escherichia coli KTE116]
gi|431313833|gb|ELG01788.1| DNA ligase [Escherichia coli KTE50]
gi|431317828|gb|ELG05603.1| DNA ligase [Escherichia coli KTE54]
gi|431416368|gb|ELG98855.1| DNA ligase [Escherichia coli KTE158]
gi|431439179|gb|ELH20517.1| DNA ligase [Escherichia coli KTE190]
gi|431472785|gb|ELH52620.1| DNA ligase [Escherichia coli KTE202]
gi|431530358|gb|ELI07038.1| DNA ligase [Escherichia coli KTE105]
gi|431569855|gb|ELI42789.1| DNA ligase [Escherichia coli KTE122]
gi|431580938|gb|ELI53395.1| DNA ligase [Escherichia coli KTE125]
gi|431583353|gb|ELI55359.1| DNA ligase [Escherichia coli KTE128]
gi|431677222|gb|ELJ43300.1| DNA ligase [Escherichia coli KTE177]
gi|431700651|gb|ELJ65626.1| DNA ligase [Escherichia coli KTE82]
Length = 671
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQERLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|417122156|ref|ZP_11971414.1| DNA ligase (NAD+) [Escherichia coli 97.0246]
gi|386147436|gb|EIG93876.1| DNA ligase (NAD+) [Escherichia coli 97.0246]
Length = 671
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPTRLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|418257393|ref|ZP_12881061.1| DNA ligase, NAD-dependent [Shigella flexneri 6603-63]
gi|420374220|ref|ZP_14874247.1| DNA ligase, NAD-dependent [Shigella flexneri 1235-66]
gi|391316473|gb|EIQ73894.1| DNA ligase, NAD-dependent [Shigella flexneri 1235-66]
gi|397897015|gb|EJL13426.1| DNA ligase, NAD-dependent [Shigella flexneri 6603-63]
Length = 671
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K G+ + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ KLA N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKLAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFVGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|365971534|ref|YP_004953095.1| DNA ligase [Enterobacter cloacae EcWSU1]
gi|365750447|gb|AEW74674.1| DNA ligase [Enterobacter cloacae EcWSU1]
Length = 671
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/664 (40%), Positives = 397/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P + D +YD+L+ EL+++E ++PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQRVGAEP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F +E + FNKR+ + LK + ++ + ELK DG+AV+L YE
Sbjct: 67 LGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDSLTWCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+ITTN+ I IPL L P LEVR EV + + F K+N+
Sbjct: 127 NGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLQGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + ++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + + S RP+D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVESERPDDTRAIVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C+AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CVAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A+ +K TTF+RF+YALGIR VGE TA LA YF LE + KA+ ++
Sbjct: 486 DRMGPKSAQNVVNALDAAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEKASIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I +L + GI W
Sbjct: 546 LQRVPDVGIVVATHVFNFFAEESNREVIGKLLEEGIRWPAPVVVNADEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 MRLL 669
>gi|296046585|gb|ADG86434.1| NAD-dependent DNA ligase [Francisella novicida]
Length = 670
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/670 (39%), Positives = 409/670 (61%), Gaps = 38/670 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + + +L +++HNI YY+ D P I D +YD+L+ L ++E YP+ + DS TQ
Sbjct: 1 MTPIQTEMDQLTHTINQHNIRYYVDDAPSIPDAEYDRLIKRLTELERDYPQFKSVDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + + H M+SLDN F D FNKRIT+++ +++Y+ E K DG+A
Sbjct: 61 RVGGIALQKFAQITHLKPMLSLDNAFEQADFAAFNKRITDKVD---SVDYVCEPKLDGLA 117
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V++ Y +G L++A+TRGDG++GE+IT N+ I IPL L + P+L+EVR EV + K
Sbjct: 118 VSITYRFGVLERAATRGDGSVGEDITANVRTIRSIPLKLRGEGFPDLVEVRGEVFMPKAA 177
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP--SS 248
F LN+ + G K F NPRNAAAG LRQL+ KI ++ L F+A+ +G + G + P +S
Sbjct: 178 FEALNQRQISKGDKVFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEGESQPMQTS 237
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
H L Q+ G+ + E V + K+ +Y I +R L YEIDGVV K+N ++ Q+
Sbjct: 238 HYGQLTQLQQWGIPVSSEVKVTDLLEKVYAYYADIMARRSALEYEIDGVVIKVNDIAKQQ 297
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
LGF ++APR+A+AYKF ++E +T +++++ Q+GRTG +TPVA LKP+ + G+T++ ATL
Sbjct: 298 TLGFVAKAPRWAIAYKFPAQEEMTLLESVDFQVGRTGAVTPVARLKPIFVGGVTVSNATL 357
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYI 428
HN EI R ++IGDTV++ R+G+VIP+I + + RP+D++ P CP+C S + +
Sbjct: 358 HNADEIARLGVKIGDTVIIRRAGDVIPQIVAIVPEKRPDDAQDIIFPLHCPVCQSIVERL 417
Query: 429 ESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488
E +ARCSG C AQRK ++HF+SRKA+NI G+G K++E+L++ +V T DL+ +
Sbjct: 418 EGEAVARCSGGLF-CEAQRKEAIKHFASRKALNIDGMGDKIVEQLIDKELVKTPADLFSL 476
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
++ LDR++ K A NI+ AI+ +K TT +RF+Y+LGIR VGE TA LA +F E
Sbjct: 477 TASSITMLDRMAMKSATNIVAAIKHAKATTLARFLYSLGIREVGEATAANLAQHFAEFER 536
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------- 594
+ A+ EQLL + +G K +F QP + +I QL + GI W
Sbjct: 537 IRTASVEQLLEVADVGDIVAKHIRQFFAQPHNIEVIEQLLEAGITWPVIEQADESQLSLK 596
Query: 595 ------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
LN + K G KV +SKNT+ LV G+ G KL KA +L +K+
Sbjct: 597 GQTWVLTGTLTQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAEELGVKV 656
Query: 637 LDEKNFVKIV 646
+DE+ + ++
Sbjct: 657 IDEQALMDLL 666
>gi|410636848|ref|ZP_11347439.1| DNA ligase [Glaciecola lipolytica E3]
gi|410143654|dbj|GAC14644.1| DNA ligase [Glaciecola lipolytica E3]
Length = 675
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 272/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +++ +++ +N YY+ D+P + D +YD+L+ EL K+E+++PEL+T DS +Q VG
Sbjct: 10 QLNDIRTQINEYNYQYYVLDDPSVPDAEYDRLMQELIKLEKQHPELMTPDSPSQKVGGAP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F+DE++ FNKRI + LK +EY E K DG+AV++ YE
Sbjct: 70 LSAFTQVEHEVPMLSLDNAFNDEELTAFNKRIVDRLKQDITLEYSCEPKLDGLAVSILYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG +GENITTN+ I +PL L P LEVR EV + K F KLN+
Sbjct: 130 NGVLVRAATRGDGKVGENITTNVKTIKNVPLTLRGNQYPARLEVRGEVFMPKLGFEKLNQ 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM--NMPSSHSELLN 254
+ K F NPRNAAAG LRQL+PKI ++ L F+A+ VG + G N+ + HS+ L
Sbjct: 190 TQREADKKVFANPRNAAAGSLRQLDPKITASRPLLFYAYSVGLVEGEVENLANKHSQRLA 249
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
GL +C E V G + ++ KI R L YEIDGVV+K+N + Q++LGF S
Sbjct: 250 QLVSWGLPVCNEIDVAVGDEECHAYFAKIGQMRDALSYEIDGVVFKVNDIDLQQQLGFVS 309
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+A KF ++E +TK+ + Q+GRTG ITPVA L+PV + G+T++ ATLHN+ EI
Sbjct: 310 RAPRWAIAQKFPAQEQMTKLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNQDEI 369
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
R ++ GDTV++ R+G+VIP++ S + +RP+D+ P+ CPIC+S I IE +A
Sbjct: 370 QRLGVKKGDTVIIRRAGDVIPQVVSVVSKMRPDDASEITFPSNCPICDSAIEKIEGEAVA 429
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RCSG C AQRK ++HF+SRKA++I GLG K+IE+LV+ +V + D +K++ L
Sbjct: 430 RCSGGLF-CAAQRKEAMKHFASRKALDIDGLGDKLIEQLVDIGLVKSPADFFKLDISQLS 488
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
++R+ +K N++ A+ +K TTF +F+YALGIR VGE TA LAN+F NLE + A +
Sbjct: 489 NMERMGDKSVANLINALLDAKQTTFPKFLYALGIREVGEATAANLANHFCNLEALKAADQ 548
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------- 594
E L + +G F+ + + +I +L +VG+ W
Sbjct: 549 ESLQAVSDVGVIVAAHVYHFLREQHNIEVIDELLNVGLTWPEIIQKSADELPLKDKTFVL 608
Query: 595 --------LNNPNTK----GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
N+ + G KV +S T+YLV G+K G KL KA L + +L E+
Sbjct: 609 TGTLESMGRNDAKAQLQALGAKVSGSVSAKTDYLVAGEKAGSKLTKAQDLGVAVLTEQEL 668
Query: 643 VKIV 646
+ ++
Sbjct: 669 IALL 672
>gi|375264757|ref|YP_005022200.1| NAD-dependent DNA ligase LigA [Vibrio sp. EJY3]
gi|369840081|gb|AEX21225.1| NAD-dependent DNA ligase LigA [Vibrio sp. EJY3]
Length = 670
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 278/663 (41%), Positives = 398/663 (60%), Gaps = 34/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ ELK+ LH H + YY+ DNP I D +YD+L+ EL IE ++P+L+T DS +Q VG
Sbjct: 8 RLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAQHPDLVTVDSPSQRVGGKP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F D ++ F+KR + + +Y E K DG+AV+L YE
Sbjct: 68 LSEFSEVKHEVPMLSLDNAFDDSELDSFHKRAQDRVGNQSVKQYCCEPKLDGLAVSLLYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I+ IPL L PE LEVR EV + K F KLN+
Sbjct: 128 NGVLVQAATRGDGTTGENITENVRTINAIPLKLRGNDWPERLEVRGEVFMPKAGFEKLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ ++ ++ L F+A+ VG ++G + SSH E
Sbjct: 188 LARQKGDKVFVNPRNAAAGSLRQLDSRVTASRPLSFYAYSVGVVQGAELASSHYERFLQI 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL +C E + + + +Y+ I +R LPYEIDGVV KI+ ++ Q++LGF +RA
Sbjct: 248 KSWGLPMCPETKRVDSLADVKAYYQDILQRRDALPYEIDGVVIKIDDIAIQERLGFVARA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 308 PRWAIAYKFPAQEEITTLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIER 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ S I RP +++ P++CP+C+S + IE + RC
Sbjct: 368 LQVKIGDQVVIRRAGDVIPQVVSVIRERRPENAREIVFPSLCPVCDSHVERIEGEAVTRC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++ L L
Sbjct: 428 TGGLV-CQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDREMVETPADLFKLSAGILTVL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A NI+ A+ KSKLTT RF+Y+LGIR VGE TA LA +FK LE + ATEEQ
Sbjct: 487 ERMGPKSAQNIVNALDKSKLTTLPRFLYSLGIREVGEATAANLAQHFKTLEAIQVATEEQ 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNPNTK------------- 601
L+ + IG K F + ++ ++ L + GI+W ++ P
Sbjct: 547 LIEVQDIGVIVAKHITTFFGEEQNQAVVKDLLEQGIHWPEISAPEQGVELPLEGKTVVLT 606
Query: 602 ------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +SK T+ L G+ G KL KA L I+I E++ +
Sbjct: 607 GTLSQLGRSEAKEALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQDLGIEIKTEQDLL 666
Query: 644 KIV 646
++
Sbjct: 667 DLM 669
>gi|417085770|ref|ZP_11953138.1| NAD-dependent DNA ligase LigA [Escherichia coli cloneA_i1]
gi|355351034|gb|EHG00228.1| NAD-dependent DNA ligase LigA [Escherichia coli cloneA_i1]
Length = 674
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 266/672 (39%), Positives = 405/672 (60%), Gaps = 35/672 (5%)
Query: 9 INFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSL 68
+ + + ++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS
Sbjct: 2 VRYGIIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSP 61
Query: 69 TQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDG 128
TQ VG + H M+SLDN F +E + FNKR+ + LK + + + ELK DG
Sbjct: 62 TQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDG 121
Query: 129 IAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYK 188
+AV++ YE G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + +
Sbjct: 122 LAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQ 181
Query: 189 KDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSS 248
F K+N+ G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +
Sbjct: 182 AGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDT 241
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
H L ++ GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q+
Sbjct: 242 HLGRLMQFKAWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQE 301
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
+LGF +RAPR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATL
Sbjct: 302 QLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATL 361
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYI 428
HN EI R ++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +
Sbjct: 362 HNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERV 421
Query: 429 ESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488
E +ARC+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+
Sbjct: 422 EGEAVARCTGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKL 480
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
L L+R+ K A N++ A++K+K TTF+RF+YALG+R VGE TA LA YF LE
Sbjct: 481 TAGKLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGVREVGEATAAGLAAYFGTLEA 540
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP 598
+ A+ E+L +P +G F + +R +IS+L G++W +++P
Sbjct: 541 LEAASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSP 600
Query: 599 ------------------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNI 634
+ K G KV +SK T+ ++ G+ G KL KA +L I
Sbjct: 601 FAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGI 660
Query: 635 KILDEKNFVKIV 646
+++DE ++++
Sbjct: 661 EVIDETEMLRLL 672
>gi|254468809|ref|ZP_05082215.1| DNA ligase, NAD-dependent [beta proteobacterium KB13]
gi|207087619|gb|EDZ64902.1| DNA ligase, NAD-dependent [beta proteobacterium KB13]
Length = 669
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 266/662 (40%), Positives = 413/662 (62%), Gaps = 34/662 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
+++ LK + H+ YY+ D+P ISD++YD LL ELK IE+ PEL+T DS TQ VG
Sbjct: 8 KISYLKSVIQEHDHCYYVLDDPQISDHEYDSLLRELKNIEDSNPELITPDSPTQRVGGSP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SL N F ++ FNKRI + L + ++E+ AELKFDG+AV + YE
Sbjct: 68 ISEFNQIQHNKPMLSLGNAFGINELEAFNKRINDTLDVN-DVEFNAELKFDGLAVTILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G +K A+TRGDGN+GE++T NI I IPL L P EVR EVL+ K DF +LN+
Sbjct: 127 NGLMKYAATRGDGNVGEDVTHNIKTIKTIPLKLYGDNHPRTFEVRGEVLMDKNDFKELNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
Y+ LG K F NPRNAAAG LRQL+PKI + L F+A+ +G++ ++H+++L +
Sbjct: 187 YQISLGQKTFANPRNAAAGSLRQLDPKITAKRKLKFYAYSLGQVDQDLELTNHTDILKYI 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
G+ I + G+N++ FY+ I KR +LP++IDG+VYK+N + Q+ LG+ S+A
Sbjct: 247 HNSGIPISSYSQRVVGINQMQHFYEDILKKRNDLPFDIDGIVYKVNSIKNQENLGYVSKA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++EA T + IN+Q+GRTG+ITPVA L+PV + G+T+T ATLHNE E+ R
Sbjct: 307 PRWAIAYKFPAEEAETVVNDINVQVGRTGVITPVARLQPVFVSGVTVTNATLHNEDEMLR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD+V+V R+G+V+P+I I RP+++K+F++P CPICNS++I I+ RC
Sbjct: 367 KDIRIGDSVIVRRAGDVVPEIVRVIKEKRPSNAKVFEMPQYCPICNSQVIRIDGEAAQRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G ++C AQ K + H+ SRKAMNI GLG K+I+ ++ D+Y ++++ + ++
Sbjct: 427 TGQ-LKCEAQAKQAISHYVSRKAMNIEGLGAKIIDHFFEKGLIKNISDIYHLDYEEIQKM 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+ + A N+ AI+ SK TT ++FIYALGIR+VGE T+K++ L+ + KA+ +
Sbjct: 486 EGFGERSAENLKEAIESSKKTTLAKFIYALGIRNVGEATSKDIVKKLGTLDNVMKASIDD 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPN----------------- 599
L I +G ++ +F + ++ +I+ + + G+ W +
Sbjct: 546 FLEINDVGPVVAQSLHQFFQEDENKAIINNIVEFGVKWEDQAQNVSNDQKLNQQTFVVTG 605
Query: 600 ---------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
GGKV +SK T+Y++ G PG K +KA +L +K+++EK ++
Sbjct: 606 TLENFSRDEIKELIENNGGKVSGSVSKKTSYVIIGDNPGSKADKAAELGVKVINEKQLME 665
Query: 645 IV 646
++
Sbjct: 666 LL 667
>gi|91211748|ref|YP_541734.1| NAD-dependent DNA ligase LigA [Escherichia coli UTI89]
gi|117624619|ref|YP_853532.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O1]
gi|218559359|ref|YP_002392272.1| NAD-dependent DNA ligase LigA [Escherichia coli S88]
gi|237704934|ref|ZP_04535415.1| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA]
gi|331658566|ref|ZP_08359510.1| DNA ligase, NAD-dependent [Escherichia coli TA206]
gi|386600360|ref|YP_006101866.1| NAD-dependent DNA ligase [Escherichia coli IHE3034]
gi|386603532|ref|YP_006109832.1| NAD-dependent DNA ligase LigA [Escherichia coli UM146]
gi|419947396|ref|ZP_14463747.1| NAD-dependent DNA ligase LigA [Escherichia coli HM605]
gi|422358039|ref|ZP_16438700.1| DNA ligase, NAD-dependent [Escherichia coli MS 110-3]
gi|422751857|ref|ZP_16805764.1| DNA ligase [Escherichia coli H252]
gi|422755809|ref|ZP_16809633.1| DNA ligase [Escherichia coli H263]
gi|422837500|ref|ZP_16885473.1| DNA ligase [Escherichia coli H397]
gi|432358768|ref|ZP_19601989.1| DNA ligase [Escherichia coli KTE4]
gi|432363527|ref|ZP_19606691.1| DNA ligase [Escherichia coli KTE5]
gi|432574529|ref|ZP_19811007.1| DNA ligase [Escherichia coli KTE55]
gi|432588711|ref|ZP_19825067.1| DNA ligase [Escherichia coli KTE58]
gi|432598435|ref|ZP_19834709.1| DNA ligase [Escherichia coli KTE62]
gi|432755263|ref|ZP_19989811.1| DNA ligase [Escherichia coli KTE22]
gi|432779333|ref|ZP_20013566.1| DNA ligase [Escherichia coli KTE59]
gi|432788334|ref|ZP_20022464.1| DNA ligase [Escherichia coli KTE65]
gi|432821781|ref|ZP_20055472.1| DNA ligase [Escherichia coli KTE118]
gi|432827919|ref|ZP_20061568.1| DNA ligase [Escherichia coli KTE123]
gi|433005842|ref|ZP_20194270.1| DNA ligase [Escherichia coli KTE227]
gi|433008488|ref|ZP_20196904.1| DNA ligase [Escherichia coli KTE229]
gi|433154508|ref|ZP_20339447.1| DNA ligase [Escherichia coli KTE176]
gi|433164323|ref|ZP_20349058.1| DNA ligase [Escherichia coli KTE179]
gi|433169370|ref|ZP_20353996.1| DNA ligase [Escherichia coli KTE180]
gi|123084405|sp|Q1R8W1.1|DNLJ_ECOUT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|166215402|sp|A1ADS8.1|DNLJ_ECOK1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|254781318|sp|B7MHR5.1|DNLJ_ECO45 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|91073322|gb|ABE08203.1| DNA ligase [Escherichia coli UTI89]
gi|115513743|gb|ABJ01818.1| NAD-dependent DNA ligase LigA [Escherichia coli APEC O1]
gi|218366128|emb|CAR03873.1| DNA ligase, NAD(+)-dependent [Escherichia coli S88]
gi|226901300|gb|EEH87559.1| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA]
gi|294491726|gb|ADE90482.1| DNA ligase, NAD-dependent [Escherichia coli IHE3034]
gi|307626016|gb|ADN70320.1| NAD-dependent DNA ligase LigA [Escherichia coli UM146]
gi|315288164|gb|EFU47564.1| DNA ligase, NAD-dependent [Escherichia coli MS 110-3]
gi|323949546|gb|EGB45434.1| DNA ligase [Escherichia coli H252]
gi|323955668|gb|EGB51426.1| DNA ligase [Escherichia coli H263]
gi|331054231|gb|EGI26258.1| DNA ligase, NAD-dependent [Escherichia coli TA206]
gi|371615316|gb|EHO03744.1| DNA ligase [Escherichia coli H397]
gi|388410686|gb|EIL70895.1| NAD-dependent DNA ligase LigA [Escherichia coli HM605]
gi|430876408|gb|ELB99922.1| DNA ligase [Escherichia coli KTE4]
gi|430885732|gb|ELC08602.1| DNA ligase [Escherichia coli KTE5]
gi|431106976|gb|ELE11164.1| DNA ligase [Escherichia coli KTE55]
gi|431121044|gb|ELE24042.1| DNA ligase [Escherichia coli KTE58]
gi|431129948|gb|ELE32057.1| DNA ligase [Escherichia coli KTE62]
gi|431301693|gb|ELF90894.1| DNA ligase [Escherichia coli KTE22]
gi|431326149|gb|ELG13511.1| DNA ligase [Escherichia coli KTE59]
gi|431336529|gb|ELG23637.1| DNA ligase [Escherichia coli KTE65]
gi|431367433|gb|ELG53910.1| DNA ligase [Escherichia coli KTE118]
gi|431371407|gb|ELG57116.1| DNA ligase [Escherichia coli KTE123]
gi|431513540|gb|ELH91622.1| DNA ligase [Escherichia coli KTE227]
gi|431523103|gb|ELI00247.1| DNA ligase [Escherichia coli KTE229]
gi|431673329|gb|ELJ39555.1| DNA ligase [Escherichia coli KTE176]
gi|431686598|gb|ELJ52158.1| DNA ligase [Escherichia coli KTE179]
gi|431687087|gb|ELJ52639.1| DNA ligase [Escherichia coli KTE180]
Length = 671
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALG+R VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGVREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|417948635|ref|ZP_12591778.1| NAD-dependent DNA ligase LigA [Vibrio splendidus ATCC 33789]
gi|342809246|gb|EGU44367.1| NAD-dependent DNA ligase LigA [Vibrio splendidus ATCC 33789]
Length = 670
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 276/669 (41%), Positives = 403/669 (60%), Gaps = 36/669 (5%)
Query: 13 KLSFRVT--ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
K S +VT +L++ LH H + YY+ D+P I D +YD+L+ +L KIEE+ PEL+T DS +Q
Sbjct: 2 KESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEEENPELVTVDSPSQ 61
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + V H M+SLDN FSDED+ FNKR+++ + E K DG+A
Sbjct: 62 RVGGQPLDGFTQVTHEIPMLSLDNAFSDEDLDAFNKRMSDRAPTANLKTFCCEPKLDGLA 121
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L Y G L QA+TRGDG GENIT N+ I IPL L + PE +EVR EV + K
Sbjct: 122 VSLLYVNGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVFMPKAG 181
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F KLN+ G K F NPRNAAAG LRQL+ +I + L F+A+ VG + G + SSH
Sbjct: 182 FDKLNEMALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVEGAELSSSHY 241
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL +C E LS + + +Y+ I +R L YEIDGVV K++ ++ Q+ L
Sbjct: 242 QRFLQLKGWGLPMCPETKQLSSLEDVKAYYQDIMTRRDALAYEIDGVVIKVDDIAAQEVL 301
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E +T + + Q+GRTG ITPVA L+P+ + G+T++ ATLHN
Sbjct: 302 GFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHN 361
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R +++GD+V++ R+G+VIP+I + + RP+ +K P+ CP+CNS + +E
Sbjct: 362 ADEIARLGVKVGDSVIIRRAGDVIPQIVAVVQDRRPDTAKDIVFPDACPVCNSAVERVEG 421
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++
Sbjct: 422 EAVARCTGGLV-CQAQRKEALKHFVSRKALDVDGLGVKVIEQLVDREMVETPADLFKLSA 480
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
+ LDR+ K A N++ A+ K+K TT +RF+Y+LGIR VGE TA LA +FK LE +
Sbjct: 481 GVITVLDRMGPKSAQNVVSALNKAKDTTLARFLYSLGIREVGEATAMNLAQHFKTLELVQ 540
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL---NNPNTK------ 601
AT EQL+ + IG F +Q +R ++ QL ++G+ W + P+ +
Sbjct: 541 AATHEQLVEVSDIGDIVASHITAFFSQEKNRAVVEQLIELGVNWPVIEDAPDDQELPLEG 600
Query: 602 ------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
G KV +SK T+ L G+ G KL KA L I+I
Sbjct: 601 KVVVLTGSLSQLGRSEAKAALQALGAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIR 660
Query: 638 DEKNFVKIV 646
E++ + ++
Sbjct: 661 TEEDLIALL 669
>gi|74312947|ref|YP_311366.1| NAD-dependent DNA ligase LigA [Shigella sonnei Ss046]
gi|383179425|ref|YP_005457430.1| NAD-dependent DNA ligase LigA [Shigella sonnei 53G]
gi|414577133|ref|ZP_11434313.1| DNA ligase, NAD-dependent [Shigella sonnei 3233-85]
gi|415844192|ref|ZP_11523996.1| DNA ligase, NAD-dependent [Shigella sonnei 53G]
gi|418266906|ref|ZP_12886349.1| DNA ligase, NAD-dependent [Shigella sonnei str. Moseley]
gi|420359612|ref|ZP_14860582.1| DNA ligase, NAD-dependent [Shigella sonnei 3226-85]
gi|420363988|ref|ZP_14864871.1| DNA ligase, NAD-dependent [Shigella sonnei 4822-66]
gi|123732314|sp|Q3YZD1.1|DNLJ_SHISS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|73856424|gb|AAZ89131.1| DNA ligase [Shigella sonnei Ss046]
gi|323169148|gb|EFZ54825.1| DNA ligase, NAD-dependent [Shigella sonnei 53G]
gi|391281182|gb|EIQ39834.1| DNA ligase, NAD-dependent [Shigella sonnei 3226-85]
gi|391284092|gb|EIQ42695.1| DNA ligase, NAD-dependent [Shigella sonnei 3233-85]
gi|391293651|gb|EIQ51910.1| DNA ligase, NAD-dependent [Shigella sonnei 4822-66]
gi|397899023|gb|EJL15399.1| DNA ligase, NAD-dependent [Shigella sonnei str. Moseley]
Length = 671
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEVLEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|386016630|ref|YP_005934920.1| DNA ligase LigA [Pantoea ananatis AJ13355]
gi|386078487|ref|YP_005992012.1| DNA ligase LigA [Pantoea ananatis PA13]
gi|327394702|dbj|BAK12124.1| DNA ligase LigA [Pantoea ananatis AJ13355]
gi|354987668|gb|AER31792.1| DNA ligase LigA [Pantoea ananatis PA13]
Length = 672
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 265/664 (39%), Positives = 401/664 (60%), Gaps = 36/664 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+TEL+ L H Y++ D P + D +YD+L+ EL+++EE++P+L+T DS TQ VG
Sbjct: 8 ITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEEQHPDLITPDSPTQRVGAAPL 67
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
+ V H M+SLDN F + FNKR+ + LK + ++ Y ELK DG+AV+L YE
Sbjct: 68 MVFEQVRHEVPMLSLDNAFDEASFRAFNKRVQDRLKSSDDLVYCCELKLDGLAVSLLYED 127
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L +A+TRGDG GENIT+N+ I IPL L + P +EVR EV + + F KLN
Sbjct: 128 GLLTRAATRGDGTTGENITSNVRTIRAIPLRLKGENIPARVEVRGEVFMTQNGFEKLNAE 187
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
K F NPRNAAAG LRQL+P+I + L FF +G+G L G MP SH L ++
Sbjct: 188 ARRTEGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGLLEGGEMPRSHMARLQQFK 247
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
GL + ++ V++ + FY +++ +R L ++IDGVV K++ Q+KLGF +RAP
Sbjct: 248 AWGLPVSDRIRLVHNVDEALAFYHEVDAQRAELGFDIDGVVIKVDSQDLQEKLGFVARAP 307
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 308 RWAVAFKFAAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVMVSNATLHNADEIERL 367
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
++IGD VV+ R+G+VIP++ + ++S RP D++ P+ CP+C S + +E + RC+
Sbjct: 368 GLRIGDKVVIRRAGDVIPQVVNVVVSERPEDAREILFPSHCPVCGSDVERVEGEAVTRCT 427
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ + L LD
Sbjct: 428 GGLI-CGAQRKEALKHFVSRRAMDVEGMGDKIIDQLVEKEYVKTPADLFRLTRETLTGLD 486
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+ K A N++ A++K+K TT +RF+YALGIR VGE TA LAN+F L+ + A + L
Sbjct: 487 RMGAKSAQNVVDALEKAKSTTLARFLYALGIREVGEATAANLANHFGELQKVMDADLDAL 546
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW---------------------- 594
+ + +G+ K F+ + +R +I QL D+GI W
Sbjct: 547 IAVQDVGTVVAKHVRHFMEEESNRDVIRQLVEDIGINWPQVMVVKAEEIDSPFAGKTVVL 606
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+N + K G KV +SK T+ L+ G+ G KL KA +L I+++DE
Sbjct: 607 TGSLSQMNRDDAKARLTELGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEM 666
Query: 643 VKIV 646
++++
Sbjct: 667 IRLL 670
>gi|449143510|ref|ZP_21774335.1| NAD-dependent DNA ligase LigA [Vibrio mimicus CAIM 602]
gi|449080843|gb|EMB51752.1| NAD-dependent DNA ligase LigA [Vibrio mimicus CAIM 602]
Length = 670
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 275/671 (40%), Positives = 399/671 (59%), Gaps = 35/671 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S + R+ EL++ LH H + YY+ D P I D +YD+L+ EL +E PEL+T DS +
Sbjct: 1 MSNVEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELITPDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + V H M+SLDN F D ++ F +R+T+ + + + E K DG+A
Sbjct: 61 RVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRIPAVQQSHFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGSDFPVRLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ +I + L F+A+ VG + G + +SH
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIIDGGELATSHY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ ++ GL IC E ++ + ++ FY+ I +R +L YEIDGVV K++ + Q++L
Sbjct: 241 QRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTVV+ R+G+VIP+I S +L RP D+K P CP+C S+I IE
Sbjct: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAKPIVFPACCPVCQSEIERIEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+G I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 421 EAVARCTGGLI-CQAQRKEALKHFVSRKAMDVDGLGDKVIEQLVDREMVSTPADLFRLRA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ A+ K+K TT RF+YALGIR VGE TA LA +F L+ +
Sbjct: 480 GELTILERMGPKSAQNVIDALNKAKQTTLPRFLYALGIREVGEATALNLAQHFLTLDAIA 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+ +QL+ +P +G F Q ++ +I++L ++GI W
Sbjct: 540 QASMDQLIEVPDVGGVVASHLHAFFAQSRNQQVIAELIELGITWPAMAVASSIAADSALA 599
Query: 595 ------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
L+ + K G KV +SKNT+ + G+ G KL KA +L I++
Sbjct: 600 GKVVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQV 659
Query: 637 LDEKNFVKIVK 647
LDE+ + +K
Sbjct: 660 LDEQALIDFLK 670
>gi|160899029|ref|YP_001564611.1| NAD-dependent DNA ligase [Delftia acidovorans SPH-1]
gi|254781308|sp|A9BZW4.1|DNLJ_DELAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|160364613|gb|ABX36226.1| DNA ligase, NAD-dependent [Delftia acidovorans SPH-1]
Length = 703
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 273/681 (40%), Positives = 408/681 (59%), Gaps = 47/681 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
K+ +V L+ +L++ YY+ D P + D +YD++ +L+ +E YPEL+T DS TQ
Sbjct: 23 DKVLAKVQALRAQLNQWAHEYYVLDTPTVPDGEYDRVFQQLQALEGAYPELVTPDSPTQR 82
Query: 72 VGLVGG--ENSKYVHHTFKMMSLDNGFSDE--DVIIFNKRITNELKLTKN---IEYIAEL 124
V +G + V H M+S+ +E F+ RI EL+L + +EY+AE
Sbjct: 83 V--IGAVLDGLMPVRHAVPMLSIRTETDNEATGAEAFDARIRKELELAEGAPPVEYVAEP 140
Query: 125 KFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVL-NIKYPPELLEVRCE 183
KFDG+A+NLRYE G L QA+TRGDG +GE++T NI I KIPL L K P ++EVR E
Sbjct: 141 KFDGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRKIPLSLPEGKGVPPVVEVRGE 200
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL--R 241
V + + DF+KLN+ + G K F NPRNAAAG +RQL+ I + L FFA+G+GE+
Sbjct: 201 VYMGRADFVKLNERQQAAGGKSFANPRNAAAGSVRQLDSGIAAQRPLSFFAYGLGEITPA 260
Query: 242 GMNMPS--SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVY 299
P +H +L + G + + + G +L+ F++++ +R LPYEIDGVVY
Sbjct: 261 AQGGPDFVTHYAMLQTLRDWGFPVAPQVCIAKGAAELVAFHQRMGAERATLPYEIDGVVY 320
Query: 300 KINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLID 359
K+N L+ Q++LGF SR PR+A+A+K+ ++E T+++ I+IQ+GRTG +TPVA L PV +
Sbjct: 321 KVNSLAQQRQLGFVSREPRWAVAHKYPAEEMPTRMEGIDIQVGRTGKLTPVARLAPVAVG 380
Query: 360 GITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICP 419
G+ +T ATLHN EI +K ++ GDTVVV R+G+VIP++ + RP F++P CP
Sbjct: 381 GVIVTNATLHNLFEIRKKRVRTGDTVVVRRAGDVIPEVVGRVPGDRPAYVPNFRMPAACP 440
Query: 420 ICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIV 479
IC S + + RC+G C AQRK + HF++R+AM+I GLG K++++LV+ ++V
Sbjct: 441 ICGSAVARPKGEANHRCTGGLF-CPAQRKEAILHFAARRAMDIEGLGDKLVDQLVDGHVV 499
Query: 480 VTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKEL 539
T DLY++ L LDR++ K A N+L A++KSK TT SRF++ LGIR VGE+TAK+L
Sbjct: 500 RTLPDLYRLGLVALASLDRMAEKSAQNVLDALEKSKKTTLSRFLFGLGIRQVGESTAKDL 559
Query: 540 ANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----- 594
A +F L+ + A+ EQLL + +G ++ F QP +R ++ QLR G++W
Sbjct: 560 ARHFGQLDAIMDASVEQLLQVRDVGPIVAESIHTFFAQPHNREVVEQLRACGVHWEEGAA 619
Query: 595 ---------------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLE 627
L K G KV +SK T+Y+V G + G KL
Sbjct: 620 REQTAQPLAGMTVVLTGTLPTLGRDQAKEMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLA 679
Query: 628 KAIKLNIKILDEKNFVKIVKG 648
KA +L + +LDE + ++ G
Sbjct: 680 KAEELGVTVLDEAGMLALLAG 700
>gi|416335577|ref|ZP_11672270.1| DNA ligase [Escherichia coli WV_060327]
gi|320196260|gb|EFW70884.1| DNA ligase [Escherichia coli WV_060327]
Length = 671
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAVKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|300114089|ref|YP_003760664.1| NAD-dependent DNA ligase [Nitrosococcus watsonii C-113]
gi|299540026|gb|ADJ28343.1| DNA ligase, NAD-dependent [Nitrosococcus watsonii C-113]
Length = 675
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 278/662 (41%), Positives = 412/662 (62%), Gaps = 34/662 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ LK+ ++ ++ AYY+ DNP+I D++YD+L+ EL+ +EE YPEL+T DS TQ VG
Sbjct: 10 RIQALKELINNYDYAYYVMDNPLIPDSEYDRLIRELRVLEENYPELITLDSPTQRVGAKP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL+N F + +++ F++R+ L + + ++Y AE K DG+AV+L Y+
Sbjct: 70 IKFLGEVKHEVPMLSLNNAFHEGELVDFHRRVKARLGIER-VDYAAEPKLDGLAVSLLYQ 128
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L Q +TRGDG GE++T NI I + L L + P LLEVR EV + +K F +LN+
Sbjct: 129 DGVLVQGATRGDGVTGEDVTHNIRTIPTVSLCLRDEKAPSLLEVRGEVYMPRKGFERLNR 188
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ G K F NPRNAAAG LRQL+ +I ++ L F +G+G++ +P HSE+L
Sbjct: 189 EQIVKGEKPFVNPRNAAAGSLRQLDSRIAASRPLAIFCYGIGQVEQGILPDRHSEVLCQL 248
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL I V+ G+ ++Y+ + R LPYEIDGVV+K++ L+ Q+ LG +RA
Sbjct: 249 KQWGLRILPHLQVVEGLAGCKKYYQHMLDMRDKLPYEIDGVVFKVDYLNQQQTLGSLARA 308
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+ALAYKF ++E LT+I I +Q+GRTG +TPVA L+P+ + G+T+++ATLHNE EI R
Sbjct: 309 PRWALAYKFPAQEELTQILDIEVQVGRTGALTPVAWLQPIFVGGVTVSKATLHNEGEIRR 368
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGDTV V R+G+VIP+I +L R S++F++P CP+C+S+I+ E IARC
Sbjct: 369 KDIRIGDTVYVRRAGDVIPEIVKVVLEERLPGSRLFQMPRQCPVCDSEIVKEEGRAIARC 428
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG + C AQRK ++HF++R+AM+I GLG K++E+LV ++ DLY + + L+ L
Sbjct: 429 SGG-LYCPAQRKEAVKHFAARRAMDINGLGDKLVEQLVKRGLIKDVADLYDLTKEQLVGL 487
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ AIQ+SK TT RF+YALGIR VGE TA+ L F +L + A+EE+
Sbjct: 488 ERMGQKSAANLINAIQQSKHTTLPRFLYALGIREVGEATAQVLTKEFGSLAALASASEER 547
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L + IG F Q + +I L++ G+ W
Sbjct: 548 LQQVVDIGPVVAAHIAAFFRQLHNCQVIQSLQEAGVCWPELEHKAPIVRPLSGRTFVLTG 607
Query: 595 ----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
+ K GGKV +S +T+YL+ G KPG KL KA L I ILDE NF+
Sbjct: 608 TLESMTREQAKERLQALGGKVSGSVSPHTDYLIIGAKPGSKLIKARNLEITILDETNFLN 667
Query: 645 IV 646
++
Sbjct: 668 LL 669
>gi|420348311|ref|ZP_14849698.1| DNA ligase, NAD-dependent [Shigella boydii 965-58]
gi|391268998|gb|EIQ27914.1| DNA ligase, NAD-dependent [Shigella boydii 965-58]
Length = 671
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPSITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWSAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|229529935|ref|ZP_04419325.1| DNA ligase [Vibrio cholerae 12129(1)]
gi|384424140|ref|YP_005633498.1| DNA ligase [Vibrio cholerae LMA3984-4]
gi|229333709|gb|EEN99195.1| DNA ligase [Vibrio cholerae 12129(1)]
gi|327483693|gb|AEA78100.1| DNA ligase [Vibrio cholerae LMA3984-4]
Length = 669
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 274/670 (40%), Positives = 402/670 (60%), Gaps = 34/670 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S ++ R+TEL+K LH H + YY+ D P I D +YD+L+ EL ++E +PEL++ DS +
Sbjct: 1 MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + V H M+SLDN F D ++ F +R+T+ ++ ++ + E K DG+A
Sbjct: 61 RVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIQAVQHSAFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYENGVLTRAATRGDGMTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL IC E +++ + ++ FY+ I +R L YEIDGVV K++ + Q++L
Sbjct: 241 QRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQFLAYEIDGVVIKVDDIQLQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTVV+ R+G+VIP+I S +L RP ++K P CP+C S + +E
Sbjct: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARCSG I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 421 EAVARCSGGLI-CQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ A+ K+K TT +F+YALGIR VGE TA LA +F +LE +
Sbjct: 480 GELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQ 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+ EQ + +P +G F Q ++ +I++L + GI W
Sbjct: 540 QASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAG 599
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L+ + K G KV +SKNT+ + G+ G KL KA +L I++
Sbjct: 600 KIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVF 659
Query: 638 DEKNFVKIVK 647
DE+ ++ +K
Sbjct: 660 DEQALIEFLK 669
>gi|229523238|ref|ZP_04412645.1| DNA ligase [Vibrio cholerae TM 11079-80]
gi|419835833|ref|ZP_14359277.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-46B1]
gi|421342525|ref|ZP_15792931.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-43B1]
gi|421353749|ref|ZP_15804081.1| DNA ligase, NAD-dependent [Vibrio cholerae HE-45]
gi|423734194|ref|ZP_17707408.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-41B1]
gi|424008478|ref|ZP_17751427.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-44C1]
gi|229339601|gb|EEO04616.1| DNA ligase [Vibrio cholerae TM 11079-80]
gi|395945276|gb|EJH55946.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-43B1]
gi|395952874|gb|EJH63487.1| DNA ligase, NAD-dependent [Vibrio cholerae HE-45]
gi|408631314|gb|EKL03865.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-41B1]
gi|408858587|gb|EKL98261.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-46B1]
gi|408865662|gb|EKM05057.1| DNA ligase, NAD-dependent [Vibrio cholerae HC-44C1]
Length = 669
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 273/670 (40%), Positives = 402/670 (60%), Gaps = 34/670 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S ++ R+TEL+K LH H + YY+ D P I D +YD+L+ EL ++E +PEL++ DS +
Sbjct: 1 MSDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + V H M+SLDN F D ++ F +R+T+ + ++ + E K DG+A
Sbjct: 61 RVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L Y+ G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYQNGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL IC E +++ + ++ FY+ I +R +L YEIDGVV K++ + Q++L
Sbjct: 241 QRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLVYEIDGVVIKVDDIQLQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTVV+ R+G+VIP+I S +L RP ++K P CP+C S + +E
Sbjct: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARCSG I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 421 EAVARCSGGLI-CQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ A+ K+K TT +F+YALGIR VGE TA LA +F +LE +
Sbjct: 480 GELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQ 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+ EQ + +P +G F Q ++ +I++L + GI W
Sbjct: 540 QASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAG 599
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L+ + K G KV +SKNT+ + G+ G KL KA +L I++
Sbjct: 600 KIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVF 659
Query: 638 DEKNFVKIVK 647
DE+ ++ +K
Sbjct: 660 DEQALIEFLK 669
>gi|291618312|ref|YP_003521054.1| LigA [Pantoea ananatis LMG 20103]
gi|291153342|gb|ADD77926.1| LigA [Pantoea ananatis LMG 20103]
Length = 672
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 265/664 (39%), Positives = 401/664 (60%), Gaps = 36/664 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+TEL+ L H Y++ D P + D +YD+L+ EL+++EE++P+L+T DS TQ VG
Sbjct: 8 ITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEEQHPDLITPDSPTQRVGAAPL 67
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
+ V H M+SLDN F + FNKR+ + LK + ++ Y ELK DG+AV+L YE
Sbjct: 68 MVFEQVRHEVPMLSLDNAFDEASFRAFNKRVQDRLKSSDDLVYCCELKLDGLAVSLLYED 127
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L +A+TRGDG GENIT+N+ I IPL L + P +EVR EV + + F KLN
Sbjct: 128 GLLTRAATRGDGTTGENITSNVRTIRAIPLRLKGENIPARVEVRGEVFMTQNGFEKLNAE 187
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
K F NPRNAAAG LRQL+P+I + L FF +G+G L G MP SH L ++
Sbjct: 188 ARRTEGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGLLEGGEMPRSHMARLQQFK 247
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
GL + ++ V++ + FY +++ +R L ++IDGVV K++ Q+KLGF +RAP
Sbjct: 248 AWGLPVSDRIRLVHNVDEALAFYHEVDAQRAELGFDIDGVVIKVDSQDLQEKLGFVARAP 307
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 308 RWAVAFKFAAQEQMTIVRDVEFQVGRTGAITPVARLEPVQVAGVMVSNATLHNADEIERL 367
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
++IGD VV+ R+G+VIP++ + ++S RP D++ P+ CP+C S + +E + RC+
Sbjct: 368 GLRIGDKVVIRRAGDVIPQVVNVVVSERPEDAREILFPSHCPVCGSDVERVEGEAVTRCT 427
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ + L LD
Sbjct: 428 GGLI-CGAQRKEALKHFVSRRAMDVEGMGDKIIDQLVEKEYVKTPADLFRLTRETLTGLD 486
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+ K A N++ A++K+K TT +RF+YALGIR VGE TA LAN+F L+ + A + L
Sbjct: 487 RMGAKSAQNVVDALEKAKSTTLARFLYALGIREVGEATAANLANHFGELQKVMDADLDAL 546
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW---------------------- 594
+ + +G+ K F+ + +R +I QL D+GI W
Sbjct: 547 IAVQDVGTVVAKHVRHFMEEESNRDVIRQLVEDIGINWPQVMVVKAEEIDSPFAGKTVVL 606
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+N + K G KV +SK T+ L+ G+ G KL KA +L I+++DE
Sbjct: 607 TGSLSQMNRDDAKARLTELGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEM 666
Query: 643 VKIV 646
++++
Sbjct: 667 IRLL 670
>gi|82544871|ref|YP_408818.1| NAD-dependent DNA ligase LigA [Shigella boydii Sb227]
gi|123741957|sp|Q31Y68.1|DNLJ_SHIBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|81246282|gb|ABB66990.1| DNA ligase [Shigella boydii Sb227]
Length = 671
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL ++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K G+ + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ KLA N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKLAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|308050127|ref|YP_003913693.1| NAD-dependent DNA ligase [Ferrimonas balearica DSM 9799]
gi|307632317|gb|ADN76619.1| DNA ligase, NAD-dependent [Ferrimonas balearica DSM 9799]
Length = 685
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/679 (39%), Positives = 401/679 (59%), Gaps = 39/679 (5%)
Query: 8 KINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDS 67
K + S+ R+ +L + L+ +N YY+ DNP + D +YD+L+ EL+ +E ++P L DS
Sbjct: 7 KNDMSQAKDRIEQLSQLLNDYNHQYYVLDNPSVPDAEYDRLMRELQALEAEHPALRQPDS 66
Query: 68 LTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFD 127
TQ VG + V H M+SLDN ++E+ F++R+ + L + +I+Y AE K D
Sbjct: 67 PTQRVGGAPAGQFQSVAHLKPMLSLDNAMNEEEFSAFHQRLADRLG-SGDIQYCAEPKLD 125
Query: 128 GIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIY 187
GIAV+L Y G L++A+TRGDG GE ITTN+ I +PL L+ K P LLEVR E +
Sbjct: 126 GIAVSLIYRDGLLERAATRGDGTTGEEITTNVRTIKSVPLRLSGKGYPALLEVRGEAFMP 185
Query: 188 KKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN--M 245
K F +N G K F NPRNAAAG LRQL+ +I N+ L F+A+ VG + G++ M
Sbjct: 186 KAGFEAMNAKAMAAGEKTFVNPRNAAAGSLRQLDSRITANRPLAFYAYAVGVVEGIDTAM 245
Query: 246 PSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLS 305
SHS L + GL + +G ++++++I +R +LPYEIDGVV K++ L+
Sbjct: 246 ADSHSGQLAQLAQWGLPVSPIVETAAGEAAALDYFRRIGQQRPDLPYEIDGVVIKVDSLA 305
Query: 306 TQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITR 365
Q++LGF +RAPR+A+A KF ++E +T +K + Q+GRTG +TPVA L+PV + G+T++
Sbjct: 306 QQEQLGFVARAPRWAIACKFPAQEEMTLLKDVEFQVGRTGAVTPVARLEPVFVGGVTVSN 365
Query: 366 ATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKI 425
ATLHN EI R ++IGDTV++ R+G+VIP+I S + RP+D++ + P+ CP+C SK+
Sbjct: 366 ATLHNADEIARLGVKIGDTVIIRRAGDVIPQIVSVVAERRPDDARDIEFPSACPVCASKV 425
Query: 426 IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDL 485
E +ARCSG C AQRK ++HF+SRKA+++ GLG K++E +V+ +V T DL
Sbjct: 426 ERFEGEAVARCSGGLF-CEAQRKEAIKHFASRKALDVDGLGDKLVELMVDRELVATPADL 484
Query: 486 YKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN 545
+ ++ L L R+ K A N++ A+ +++ TT RF+YALGIR VGE TA LA +F+
Sbjct: 485 FTLSASRLTMLPRMGTKSAQNLVAALDQARTTTLPRFLYALGIREVGEATAANLARHFQT 544
Query: 546 LECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRD---VGIYW-------- 594
LE + A + L+ + +G K F QP + +I L D ++W
Sbjct: 545 LEALMAADTDALIEVDDVGEVVAKHVYYFFRQPHNLEVIQALTDTEGANVHWPAIEAVAE 604
Query: 595 ------------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAI 630
+ K G KV +SKNT+ LV G+K G KL KA
Sbjct: 605 EAQPLKGQTWVLTGTLSQMGRSEAKAALEALGAKVSGSVSKNTDTLVAGEKAGSKLTKAT 664
Query: 631 KLNIKILDEKNFVKIVKGF 649
L + +LDE V ++ +
Sbjct: 665 DLGVPVLDEDGLVALLAQY 683
>gi|378766258|ref|YP_005194719.1| NAD-dependent DNA ligase LigA [Pantoea ananatis LMG 5342]
gi|365185732|emb|CCF08682.1| NAD-dependent DNA ligase LigA [Pantoea ananatis LMG 5342]
Length = 672
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 401/664 (60%), Gaps = 36/664 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+TEL+ L H Y++ D P I D +YD+L+ EL+++EE++P+L+T DS TQ VG
Sbjct: 8 ITELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEEQHPDLITPDSPTQRVGAAPL 67
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
+ V H M+SLDN F + FNKR+ + LK + ++ Y ELK DG+AV+L YE
Sbjct: 68 MVFEQVRHEVPMLSLDNAFDEASFRAFNKRVQDRLKSSDDLVYCCELKLDGLAVSLLYED 127
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L +A+TRGDG GENIT+N+ I IPL L + P +EVR EV + + F KLN
Sbjct: 128 GLLTRAATRGDGTTGENITSNVRTIRAIPLRLKGENIPARVEVRGEVFMTQNGFEKLNAE 187
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
K F NPRNAAAG LRQL+P+I + L FF +G+G L G MP SH L ++
Sbjct: 188 ARRTEGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGLLEGGEMPRSHMARLQQFK 247
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
GL + ++ V++ + FY +++ +R L ++IDGVV K++ Q+KLGF +RAP
Sbjct: 248 AWGLPVSDRIRLVHNVDEALAFYHEVDAQRAELGFDIDGVVIKVDSQDLQEKLGFVARAP 307
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 308 RWAVAFKFAAQEQMTIVRDVEFQVGRTGAITPVARLEPVQVAGVMVSNATLHNADEIERL 367
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
++IGD VV+ R+G+VIP++ + ++S RP D++ P+ CP+C S + +E + RC+
Sbjct: 368 GLRIGDKVVIRRAGDVIPQVVNVVVSERPEDAREILFPSHCPVCGSDVERVEGEAVTRCT 427
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ + L LD
Sbjct: 428 GGLI-CGAQRKEALKHFVSRRAMDVEGMGDKIIDQLVEKEYVKTPADLFRLTRETLTGLD 486
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+ K A N++ A++K+K TT +RF+YALGIR VGE TA LAN+F L+ + A + L
Sbjct: 487 RMGAKSAQNVVDALEKAKSTTLARFLYALGIREVGEATAANLANHFGELQKVMDADLDAL 546
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW---------------------- 594
+ + +G+ K F+ + +R +I QL D+GI W
Sbjct: 547 IAVQDVGTVVAKHVRHFMEEESNRDVIRQLVEDIGINWPQVMVVKAEEIDSPFAGKTVVL 606
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+N + K G KV +SK T+ L+ G+ G KL KA +L I+++DE
Sbjct: 607 TGSLSQMNRDDAKARLTELGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEM 666
Query: 643 VKIV 646
++++
Sbjct: 667 IRLL 670
>gi|416299093|ref|ZP_11652174.1| DNA ligase [Shigella flexneri CDC 796-83]
gi|420326552|ref|ZP_14828303.1| DNA ligase, NAD-dependent [Shigella flexneri CCH060]
gi|320185101|gb|EFW59881.1| DNA ligase [Shigella flexneri CDC 796-83]
gi|391250069|gb|EIQ09292.1| DNA ligase, NAD-dependent [Shigella flexneri CCH060]
Length = 671
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIVGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|417724223|ref|ZP_12373027.1| DNA ligase, NAD-dependent [Shigella flexneri K-304]
gi|333016518|gb|EGK35849.1| DNA ligase, NAD-dependent [Shigella flexneri K-304]
Length = 671
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARCTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K G+ + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ KLA N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKLAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|417286341|ref|ZP_12073630.1| DNA ligase (NAD+) [Escherichia coli TW07793]
gi|419701222|ref|ZP_14228823.1| NAD-dependent DNA ligase LigA [Escherichia coli SCI-07]
gi|422379155|ref|ZP_16459358.1| DNA ligase, NAD-dependent [Escherichia coli MS 57-2]
gi|432554475|ref|ZP_19791197.1| DNA ligase [Escherichia coli KTE47]
gi|432733122|ref|ZP_19967952.1| DNA ligase [Escherichia coli KTE45]
gi|432760205|ref|ZP_19994699.1| DNA ligase [Escherichia coli KTE46]
gi|324009590|gb|EGB78809.1| DNA ligase, NAD-dependent [Escherichia coli MS 57-2]
gi|380347423|gb|EIA35710.1| NAD-dependent DNA ligase LigA [Escherichia coli SCI-07]
gi|386249800|gb|EII95969.1| DNA ligase (NAD+) [Escherichia coli TW07793]
gi|431083521|gb|ELD89697.1| DNA ligase [Escherichia coli KTE47]
gi|431274548|gb|ELF65603.1| DNA ligase [Escherichia coli KTE45]
gi|431307859|gb|ELF96149.1| DNA ligase [Escherichia coli KTE46]
Length = 671
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ FY ++ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|262172020|ref|ZP_06039698.1| DNA ligase [Vibrio mimicus MB-451]
gi|261893096|gb|EEY39082.1| DNA ligase [Vibrio mimicus MB-451]
Length = 670
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 275/671 (40%), Positives = 399/671 (59%), Gaps = 35/671 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S + R+ EL++ LH H + YY+ D P I D +YD+L+ EL +E PEL+T DS +
Sbjct: 1 MSNVEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELITPDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + V H M+SLDN F D ++ F +R+T+ + + + E K DG+A
Sbjct: 61 RVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRIPAVQQSHFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPVRLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ +I + L F+A+ VG + G + +SH
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIIDGGELATSHY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ ++ GL IC E ++ + ++ FY+ I +R +L YEIDGVV K++ + Q++L
Sbjct: 241 QRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTVV+ R+G+VIP+I S +L RP D+K P CP+C S+I IE
Sbjct: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAKPIVFPACCPVCQSEIERIEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+G I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 421 EAVARCTGGLI-CQAQRKEALKHFVSRKAMDVDGLGDKVIEQLVDREMVSTPADLFRLRA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ A+ K+K TT RF+YALGIR VGE TA LA +F L+ +
Sbjct: 480 GELTILERMGPKSAQNVIDALNKAKQTTLPRFLYALGIREVGEATALNLAQHFLTLDAIA 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+ +QL+ +P +G F Q ++ +I++L ++GI W
Sbjct: 540 QASMDQLIEVPDVGGVVASHLHAFFAQSRNQQVIAELIELGITWPAMAVASSIAADSALA 599
Query: 595 ------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
L+ + K G KV +SKNT+ + G+ G KL KA +L I++
Sbjct: 600 GKVVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQV 659
Query: 637 LDEKNFVKIVK 647
LDE+ + +K
Sbjct: 660 LDEQALIDFLK 670
>gi|432806591|ref|ZP_20040519.1| DNA ligase [Escherichia coli KTE91]
gi|432935308|ref|ZP_20134662.1| DNA ligase [Escherichia coli KTE184]
gi|433194468|ref|ZP_20378454.1| DNA ligase [Escherichia coli KTE90]
gi|431354733|gb|ELG41459.1| DNA ligase [Escherichia coli KTE91]
gi|431452091|gb|ELH32540.1| DNA ligase [Escherichia coli KTE184]
gi|431714968|gb|ELJ79137.1| DNA ligase [Escherichia coli KTE90]
Length = 671
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 401/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLTRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|317049042|ref|YP_004116690.1| NAD-dependent DNA ligase [Pantoea sp. At-9b]
gi|316950659|gb|ADU70134.1| DNA ligase, NAD-dependent [Pantoea sp. At-9b]
Length = 672
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 260/665 (39%), Positives = 399/665 (60%), Gaps = 36/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++T L+ L H Y++ D P + D +YD+L+ +L+++E +PEL+T DS TQ VG
Sbjct: 7 QITALRTTLRHHEYLYHVMDTPEVPDAEYDRLMAQLRELESAHPELVTPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F + + FNKR+ + LK + ++ Y ELK DG+AV+L YE
Sbjct: 67 LAAFEQVRHEVPMLSLDNTFDEAGFLAFNKRVQDRLKSSDDLTYCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GENIT N+ IH IPL L+ P +EVR EV + + F KLN+
Sbjct: 127 DGLLVSAATRGDGTTGENITANVRTIHAIPLRLHGDNIPARVEVRGEVFMTESGFEKLNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +G+G L G MP+SH L +
Sbjct: 187 DARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEMPASHLGRLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + + + ++ FY+++ R L ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRIRLANNADDVLAFYREVEEARPTLGFDIDGVVIKVDSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLHNADEIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + + S RP D++ P+ CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVESERPEDTREIVFPSHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVKTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TT RF+YALGIR VGE TA LAN+F LE + A +
Sbjct: 486 DRMGPKSAQNVVDALEKAKFTTLPRFLYALGIREVGEATAANLANHFGELEKVMDADLDA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW--------------------- 594
L+ + +G F+++ +R +I +L +++G++W
Sbjct: 546 LIAVQDVGQVVASHVRNFMDEESNREVIRELTQEMGVHWPQVEVVNAAEIDSPFAGKTVV 605
Query: 595 -------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
+N + K G KV +SK T+ L+ G+ G KL KA +L I ++DE
Sbjct: 606 LTGSLSQMNRDDAKARLTALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIAVIDEAE 665
Query: 642 FVKIV 646
++++
Sbjct: 666 MIRLL 670
>gi|433199031|ref|ZP_20382930.1| DNA ligase [Escherichia coli KTE94]
gi|431720762|gb|ELJ84782.1| DNA ligase [Escherichia coli KTE94]
Length = 671
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 NARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ FY ++ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|441504580|ref|ZP_20986573.1| DNA ligase [Photobacterium sp. AK15]
gi|441427679|gb|ELR65148.1| DNA ligase [Photobacterium sp. AK15]
Length = 671
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 276/659 (41%), Positives = 399/659 (60%), Gaps = 34/659 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+ +L H YY+ DNP I D +YD+++ +L +E + P L+T DS +Q VG +
Sbjct: 12 LRDQLAYHGHRYYVEDNPEIPDAEYDRMMQQLLALEAENPALITPDSPSQRVGGKPLDGF 71
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
V H M+SLDN F+D+++ F KR+ + L + ++ Y E K DG+AV+L YE G L
Sbjct: 72 TQVTHELPMLSLDNAFNDDELRAFEKRMQDRLIPSLSLSYCCEPKLDGLAVSLMYENGIL 131
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
QA+TRGDG GENITTN+ I IPL L + PE LEVR EV + K+ F +LN
Sbjct: 132 VQAATRGDGTTGENITTNVRTIRSIPLKLQGEGWPERLEVRGEVFMPKQGFDELNARAQK 191
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIG 260
G K F NPRNAAAG LRQL+ KI + L FFA+ VG + GM++ +S E L + G
Sbjct: 192 KGEKTFANPRNAAAGSLRQLDSKITATRPLSFFAYSVGVVEGMDLAASQYERLVQLKSWG 251
Query: 261 LSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFA 320
+ +C E L+ ++ +I +Y+ I KR +LPYEIDGVV K++ + TQ +LGF +RAPR+A
Sbjct: 252 IPMCPEIRQLNSLDDVIAYYQDIAEKRPSLPYEIDGVVIKVDDVETQDQLGFVARAPRWA 311
Query: 321 LAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQ 380
+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN E+ R +
Sbjct: 312 IAYKFPAQEEMTLLNNVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEVERLGVM 371
Query: 381 IGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSW 440
IGDTV++ R+G+VIP+I S + S RP ++ P CPIC SK+ +E +ARCSG
Sbjct: 372 IGDTVIIRRAGDVIPQIVSVVESRRPENATPIIFPEACPICESKVERVEGEAVARCSGGL 431
Query: 441 IECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS 500
C AQR L+HF SRKA+++ G G+K+IE+LV+ +V T DL+K++ L L+R+
Sbjct: 432 F-CQAQRIEALKHFVSRKALDVDGCGEKVIEQLVDREMVSTPADLFKLSAGVLTVLERMG 490
Query: 501 NKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNI 560
K A ++ A++KSKLTT RF+Y+LGIR VGE TA LA +F+ L+ + A++EQL+ +
Sbjct: 491 PKSAQKLVDALEKSKLTTLPRFLYSLGIREVGEATAANLALHFETLDAINAASKEQLIKV 550
Query: 561 PKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------------- 594
P +G + F + + +I++L + GI W
Sbjct: 551 PDVGDIVAEHVYNFFREEHNLKVINELLEEGINWPAIEKREEGVELPLDGKIVVLTGSLS 610
Query: 595 -LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
L K G KV +SK T+ LV G+ G KL KA L+I+I DE++ V +
Sbjct: 611 QLTRSEAKAALQDLGAKVTGSVSKKTDLLVAGEAAGSKLTKAQDLDIEIWDEQDLVDFM 669
>gi|432617569|ref|ZP_19853682.1| DNA ligase [Escherichia coli KTE75]
gi|431153557|gb|ELE54461.1| DNA ligase [Escherichia coli KTE75]
Length = 671
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ FY ++ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAVKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|432534727|ref|ZP_19771700.1| DNA ligase [Escherichia coli KTE234]
gi|431059670|gb|ELD69020.1| DNA ligase [Escherichia coli KTE234]
Length = 671
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLLHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|384413954|ref|YP_005623316.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|320014458|gb|ADV98029.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 670
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 262/664 (39%), Positives = 404/664 (60%), Gaps = 36/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P I D +YD+++ +L+ +E ++PEL+T DS TQ VG
Sbjct: 7 QINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SLDN F +E + F+KR+ + LK + + + ELK DG+AV+L YE
Sbjct: 67 LDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAEPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT N+ I IPL L+ P +EVR EV + + F +LN+
Sbjct: 127 NGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVFMPQAGFEQLNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SH + L +
Sbjct: 187 EARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGELPRSHIQCLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +G +++I FY++I R L ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T+++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIP++ ++ RP+D+K P+ CP+C+S I +E +ARC
Sbjct: 367 LGLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITFPSQCPVCSSDIERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SR+A+++ G+G K+IE+LV V DL+++ L L
Sbjct: 427 TGGLF-CAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFQLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F+ L+ + A E
Sbjct: 486 DRMGPKSAQNLIAALEKAKQTTFARFLYALGIREVGEATAANLAAHFRTLDNLRAADIET 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L ++P +G K + F+++ ++ +I +L V + W
Sbjct: 546 LKSVPDVGEVVAKHVMNFLSEEHNQKVIEELEKV-VSWPEPQQIVVEESDSPFAGKTVVL 604
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ K G KV +SK T+ ++ G+ G KL KA +L IK++DE
Sbjct: 605 TGSLTILSRDEAKDRLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEM 664
Query: 643 VKIV 646
++++
Sbjct: 665 IRLL 668
>gi|260892973|ref|YP_003239070.1| NAD-dependent DNA ligase [Ammonifex degensii KC4]
gi|260865114|gb|ACX52220.1| DNA ligase, NAD-dependent [Ammonifex degensii KC4]
Length = 672
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 262/671 (39%), Positives = 412/671 (61%), Gaps = 36/671 (5%)
Query: 7 KKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKD 66
++++ + R+ EL++E+ H+ YY+ D+P+ISD +YD+L+ EL +EE +PE +T +
Sbjct: 3 RRLSKEEAKRRIEELRREIAYHDYRYYVLDSPVISDAEYDRLVLELMALEEAFPEFITPN 62
Query: 67 SLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKF 126
S TQ VG E V H M+SL N F ED+ F++R+ L K +EY+ E K
Sbjct: 63 SPTQRVGGAPREGFPTVRHLVPMLSLANAFEPEDLRDFDRRVREALPGEK-VEYVVEPKI 121
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+AV+L Y G Q +TRGDG +GE++T N+ I IPL +K P L+EVR E +
Sbjct: 122 DGLAVSLLYRDGEFVQGATRGDGEVGEDVTPNLRTIRSIPLRF-LKDAPPLIEVRGEAFM 180
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
K+ F+KLN+ R G F NPRNAAAG +RQL+P++ + L FFA+G+G G++
Sbjct: 181 PKEAFVKLNERREEAGEPPFANPRNAAAGSIRQLDPRVTAGRKLDFFAYGIGHYEGISF- 239
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
S+H E+L+W + G + + S ++++I++ KRF+LPY IDG+V K+N L +
Sbjct: 240 STHWEVLDWLAEQGFRVNEHRRLFSSIDEVIDYVLSWQSKRFDLPYVIDGMVVKVNSLES 299
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q +LG T ++PR+A+A+KF +EA+TK++ I I +GRTG++TPVA+ PV I G T++RA
Sbjct: 300 QARLGATMKSPRWAVAFKFPPEEAVTKLRRIEISVGRTGVLTPVAVFDPVQIAGTTVSRA 359
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKII 426
TLHNE I K+I++GD +VVH++G+VIP++ S+ R + +IF++P+ CP C +K I
Sbjct: 360 TLHNEDLIREKDIRVGDYIVVHKAGDVIPEVVRSLPERRTGNEQIFRMPDHCPACGAKTI 419
Query: 427 YIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY 486
E + RC I C A+ K + HF+SR AM+I GLGK ++E+LV+ +V D+Y
Sbjct: 420 REEGEVAVRCPN--ISCPARLKESIFHFASRNAMDIRGLGKVLVEQLVDRGLVKNVADIY 477
Query: 487 KINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546
+ ++LLRL+R+ K N+L I++SK +R I+ LGIRHVGE AK LA +F ++
Sbjct: 478 FLRREDLLRLERMGPKSTANLLREIEESKSRGLNRLIFGLGIRHVGERAAKLLAEHFGSI 537
Query: 547 ECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----- 601
+ + +ATEE+L IP+IG + F +P + +I +LR+ G+ +
Sbjct: 538 DRLAQATEEELTEIPEIGPKIAASVRAFFAEPRNLEVIERLREAGVRLETTKEVREEGPL 597
Query: 602 --------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIK 635
GG+V + +S+ T+Y+V G+ PG K ++A +L IK
Sbjct: 598 KGKVFVFTGALKSFTREEAKALIERLGGRVASSVSRRTDYVVVGENPGSKYDRARELGIK 657
Query: 636 ILDEKNFVKIV 646
+L+E+ F +++
Sbjct: 658 MLNEEEFKRLL 668
>gi|77165170|ref|YP_343695.1| DNA ligase [Nitrosococcus oceani ATCC 19707]
gi|254433594|ref|ZP_05047102.1| DNA ligase, NAD-dependent [Nitrosococcus oceani AFC27]
gi|123730661|sp|Q3JAI1.1|DNLJ_NITOC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|76883484|gb|ABA58165.1| DNA ligase (NAD+) [Nitrosococcus oceani ATCC 19707]
gi|207089927|gb|EDZ67198.1| DNA ligase, NAD-dependent [Nitrosococcus oceani AFC27]
Length = 675
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 278/658 (42%), Positives = 404/658 (61%), Gaps = 34/658 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ LK+ ++ ++ AYY+ +NP++ D++YD+L+ EL+ +EE YPEL+T DS TQ VG
Sbjct: 10 RIQALKELINNYDYAYYVVNNPLVPDSEYDRLIRELQALEENYPELITLDSPTQRVGAKP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
++ + H M+SL+N F + ++ F++R+ L + + ++Y AE K DG+AV+L Y+
Sbjct: 70 VKSLGEIKHEIPMLSLNNAFHEGELADFHRRVKTRLGIER-VDYAAEPKLDGLAVSLLYQ 128
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L Q +TRGDG GE+IT NI I + L L + P LLEVR EV + ++ F + N+
Sbjct: 129 DGVLVQGATRGDGITGEDITHNIRTIPTVSLRLRGEKIPSLLEVRGEVYMPRQGFEQFNR 188
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ G K F NPRNAAAG LRQL+P+I N+ L F +GVG++ G +P HSE+L
Sbjct: 189 EQIAKGEKPFVNPRNAAAGSLRQLDPRITANRPLALFCYGVGQVEGGILPDRHSEILFQL 248
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL I V+ + ++Y+ + R LPYEIDGVV+K++ L Q+ LG +RA
Sbjct: 249 KQWGLRILPYSEVVEELAGCEKYYQHLLDLRDKLPYEIDGVVFKVDYLDQQQILGSLARA 308
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+ALAYKF ++E LT+I I +Q+GRTG +TPVA L+PV + G+T+++ATLHNE EI R
Sbjct: 309 PRWALAYKFPAQEELTQILDIEVQVGRTGALTPVARLQPVFVGGVTVSKATLHNEGEIQR 368
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGDTV V R+G+VIP+I I+ R DS+ F++P CP+C S+I+ E +ARC
Sbjct: 369 KDIRIGDTVYVRRAGDVIPEIVKVIMERRLPDSRPFQMPRQCPVCGSEIVKEEGGAVARC 428
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG + C AQRK ++HF+ R+AM+I GLG K++E+L ++ DLY + + L L
Sbjct: 429 SGG-LYCPAQRKEAIKHFAGRRAMDINGLGDKLVEQLTKQGLLKDVADLYGLTKEQLAGL 487
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ AIQ+SK TT RF+YALGIR VGE TA+ LA F +LE + +EE+
Sbjct: 488 ERMGQKSATNLINAIQQSKHTTLPRFLYALGIREVGEATAQVLAKEFGSLEALASVSEER 547
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L + IG F QP +R +I L+ G+ W
Sbjct: 548 LQQVTDIGPIVAAHIAAFFRQPHNRQIIQGLQKAGVCWPEVEDKVQIVQPLLGRTFVLTG 607
Query: 595 ----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K GGKV +S +T+YL+ G PG KL KA L I ILDE F
Sbjct: 608 TLESMTREQAKERLQALGGKVNGSVSPHTDYLIIGANPGSKLVKARNLGITILDETYF 665
>gi|432407510|ref|ZP_19650218.1| DNA ligase [Escherichia coli KTE28]
gi|430928984|gb|ELC49505.1| DNA ligase [Escherichia coli KTE28]
Length = 671
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ FY ++ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIIINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|218710253|ref|YP_002417874.1| NAD-dependent DNA ligase LigA [Vibrio splendidus LGP32]
gi|254782307|sp|B7VIK3.1|DNLJ_VIBSL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|218323272|emb|CAV19449.1| DNA ligase [Vibrio splendidus LGP32]
Length = 670
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 277/670 (41%), Positives = 405/670 (60%), Gaps = 38/670 (5%)
Query: 13 KLSFRVT--ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
K S +VT +L++ LH H + YY+ D+P I D +YD+L+ +L KIE++ PEL+T DS +Q
Sbjct: 2 KESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEDENPELVTVDSPSQ 61
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIE-YIAELKFDGI 129
VG + V H M+SLDN FSD+D+ FNKR+++ T N+E + E K DG+
Sbjct: 62 RVGGQPLDGFTQVTHEIPMLSLDNAFSDDDLDAFNKRMSDRAP-TANLETFCCEPKLDGL 120
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV+L Y G L QA+TRGDG GENIT N+ I IPL L + PE +EVR EV + K
Sbjct: 121 AVSLLYVNGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVFMPKA 180
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F KLN+ G K F NPRNAAAG LRQL+ +I + L F+A+ VG ++G + +SH
Sbjct: 181 GFDKLNEMALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVQGAELSNSH 240
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
+ + GL +C E LS + + +Y+ I +R L YEIDGVV K++ ++ Q+
Sbjct: 241 YQRFLQLKAWGLPMCPETKQLSSLEDVKAYYQDIMTRRDTLAYEIDGVVIKVDDIAAQET 300
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF +RAPR+A+AYKF ++E +T + + Q+GRTG ITPVA L+P+ + G+T++ ATLH
Sbjct: 301 LGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLH 360
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R +++GD+V++ R+G+VIP+I + + RP +K P+ CP+CNS + +E
Sbjct: 361 NADEIARLGVKVGDSVIIRRAGDVIPQIVAVVQDRRPETAKDIVFPDACPVCNSAVERVE 420
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++
Sbjct: 421 GEAVARCTGGLV-CQAQRKEALKHFVSRKALDVDGLGVKVIEQLVDREMVETPADLFKLS 479
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
+ LDR+ K A N++ A+ K+K TT +RF+Y+LGIR VGE TA LA +FK LE +
Sbjct: 480 AGVITVLDRMGPKSAQNVVSALNKAKDTTLARFLYSLGIREVGEATAMNLAQHFKTLELV 539
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
AT EQL+ + IG F +Q +R ++ QL ++G+ W
Sbjct: 540 QAATHEQLVEVSDIGDIVASHLTSFFSQEKNRAVVDQLIELGVNWPAIEAVADDQELPLE 599
Query: 595 ------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
L K G KV +SK T+ L G+ G KL KA L I+I
Sbjct: 600 GKVVVLTGSLSKLGRSEAKAALQALGAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEI 659
Query: 637 LDEKNFVKIV 646
E++ + ++
Sbjct: 660 RTEEDLIALI 669
>gi|333914831|ref|YP_004488563.1| DNA ligase [Delftia sp. Cs1-4]
gi|333745031|gb|AEF90208.1| DNA ligase [Delftia sp. Cs1-4]
Length = 703
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 273/681 (40%), Positives = 408/681 (59%), Gaps = 47/681 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
K+ +V L+ +L++ YY+ D P + D +YD++ +L+ +E YPEL+T DS TQ
Sbjct: 23 DKVLAKVQALRAQLNQWAHEYYVLDTPTVPDGEYDRVFQQLQALEGAYPELVTPDSPTQR 82
Query: 72 VGLVGG--ENSKYVHHTFKMMSLDNGFSDE--DVIIFNKRITNELKLTKN---IEYIAEL 124
V +G + V H M+S+ +E F+ RI EL+L + +EY+AE
Sbjct: 83 V--IGAVLDGLMPVRHAVPMLSIRTETDNEATGAEAFDARIRKELELAEGAPPVEYVAEP 140
Query: 125 KFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVL-NIKYPPELLEVRCE 183
KFDG+A+NLRYE G L QA+TRGDG +GE++T NI I KIPL L K P ++EVR E
Sbjct: 141 KFDGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRKIPLSLPEGKGVPPVVEVRGE 200
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL--R 241
V + + DF+KLN+ + G K F NPRNAAAG +RQL+ I + L FFA+G+GE+
Sbjct: 201 VYMGRADFVKLNERQQAAGGKSFANPRNAAAGSVRQLDSGIAAQRPLSFFAYGLGEITPA 260
Query: 242 GMNMPS--SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVY 299
P +H +L + G + + + G +L+ F++++ +R LPYEIDGVVY
Sbjct: 261 AQGGPDFVTHYAMLQTLRDWGFPVAPQVCIAKGAAELVAFHQRMGAERATLPYEIDGVVY 320
Query: 300 KINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLID 359
K+N L+ Q++LGF SR PR+A+A+K+ ++E T+++ I+IQ+GRTG +TPVA L PV +
Sbjct: 321 KVNSLAQQRQLGFVSREPRWAVAHKYPAEEMPTRMEGIDIQVGRTGKLTPVARLAPVAVG 380
Query: 360 GITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICP 419
G+ +T ATLHN EI +K ++ GDTVVV R+G+VIP++ + RP F++P CP
Sbjct: 381 GVIVTNATLHNLFEIRKKRVRTGDTVVVRRAGDVIPEVVGRVPGDRPAYVPNFRMPAACP 440
Query: 420 ICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIV 479
IC S + + RC+G C AQRK + HF++R+AM+I GLG K++++LV+ ++V
Sbjct: 441 ICGSAVSRPKGEANHRCTGGLF-CPAQRKEAILHFAARRAMDIEGLGDKLVDQLVDGHVV 499
Query: 480 VTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKEL 539
T DLY++ L LDR++ K A N+L A++KSK TT SRF++ LGIR VGE+TAK+L
Sbjct: 500 RTLPDLYRLGLVALASLDRMAEKSAQNVLDALEKSKKTTLSRFLFGLGIRQVGESTAKDL 559
Query: 540 ANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----- 594
A +F L+ + A+ EQLL + +G ++ F QP +R ++ QLR G++W
Sbjct: 560 ARHFGQLDAIMDASVEQLLQVRDVGPIVAESIHTFFAQPHNREVVEQLRACGVHWEEGAA 619
Query: 595 ---------------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLE 627
L K G KV +SK T+Y+V G + G KL
Sbjct: 620 REQTAQPLAGMTVVLTGTLPTLGRDQAKEMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLA 679
Query: 628 KAIKLNIKILDEKNFVKIVKG 648
KA +L + +LDE + ++ G
Sbjct: 680 KAEELGVTVLDEAGMLALLAG 700
>gi|319762938|ref|YP_004126875.1| DNA ligase, nad-dependent [Alicycliphilus denitrificans BC]
gi|330825018|ref|YP_004388321.1| DNA ligase [Alicycliphilus denitrificans K601]
gi|317117499|gb|ADU99987.1| DNA ligase, NAD-dependent [Alicycliphilus denitrificans BC]
gi|329310390|gb|AEB84805.1| DNA ligase, NAD-dependent [Alicycliphilus denitrificans K601]
Length = 717
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 269/709 (37%), Positives = 408/709 (57%), Gaps = 64/709 (9%)
Query: 3 FHAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPEL 62
F A + ++ +V L+ +L++ YY+ D P + D +YD++ +L+ +E YP L
Sbjct: 8 FSAPAPAVPALVASKVEALRAQLNQWAHEYYVLDEPSVPDAEYDRVFQQLQALEGAYPAL 67
Query: 63 LTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDE--DVIIFNKRITNELKLTKN--- 117
+T DS TQ V V H M+S+ E F+ RI ELKL
Sbjct: 68 VTPDSPTQRVIGAVMNGLAPVRHRVAMLSIRTETDTEASGAEAFDARIRRELKLAPEDPP 127
Query: 118 IEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYP--- 174
+EY+AE KFDG+A++LRYE+G L QA+TRGDG +GE++T NI I +IPL L + P
Sbjct: 128 VEYVAEPKFDGLAMSLRYEHGRLVQAATRGDGEVGEDVTHNIRTIRQIPLTLQLSAPTLG 187
Query: 175 -----------------------PELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRN 211
P +LEVR EV + + DF +LN+ + G K F NPRN
Sbjct: 188 ADASSLPPEGARFALGRPGGETAPPVLEVRGEVYMRRADFEQLNERQREKGDKTFVNPRN 247
Query: 212 AAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVLS 271
AAAG +RQL+ I + L FFA+G+GE+ G ++H LL + G + + +
Sbjct: 248 AAAGAVRQLDSGIAAQRPLSFFAYGLGEVEGGPEFATHYALLQRLKAWGFPVAAQVRIAL 307
Query: 272 GVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEAL 331
G LI F+++I +R LPY+IDGVVYK+N L+ Q++LGF +R PR+A+A+K+ ++E +
Sbjct: 308 GAPGLIAFHQQIGAERDQLPYDIDGVVYKVNSLALQRQLGFVTREPRWAVAHKYPAQEMM 367
Query: 332 TKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSG 391
T+++ I++Q+GRTG +TPVA L PV + G+T+T ATLHN E+ RK +++GD V+V R+G
Sbjct: 368 TRVEGIDVQVGRTGKLTPVARLAPVFVGGVTVTNATLHNLFELRRKRVRVGDQVIVRRAG 427
Query: 392 NVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGL 451
+VIP++ + + R + F++P CPIC S ++ + RCSG C AQRK +
Sbjct: 428 DVIPEVVGVVPAPRASYVPNFRMPRQCPICASTVVREPGEVNHRCSGGLF-CPAQRKQAV 486
Query: 452 QHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAI 511
HF+ R+AM+I GLG+K++++LV+ +++ T DL++++ L LDR++ K A N+L A+
Sbjct: 487 LHFAQRRAMDIEGLGEKLVDQLVDGHVIRTLPDLFRLDLPTLAGLDRMAEKSAQNVLDAL 546
Query: 512 QKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAF 571
QKSK TT RF++ LGIRHVGE TAK+LA +F L+ + A +QLL + +G ++
Sbjct: 547 QKSKQTTLPRFLFGLGIRHVGEATAKDLARHFGALDAIMDAGVDQLLQVNDVGPVVAESI 606
Query: 572 IKFINQPLHRLLISQLRDVGIYWLNNPNT------------------------------- 600
F QP +R ++ QLR+ G+ W T
Sbjct: 607 HTFFAQPHNREVVGQLRECGVAWEEGEPTAGATLPLAGKTIVLTGTLPTLSRDEAKDMLE 666
Query: 601 -KGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 648
G KV +SK T+Y+V G + G KLEKA L I +LDE +++G
Sbjct: 667 AAGAKVAGSVSKKTHYVVAGAEAGSKLEKAQALGIPVLDEDGLRALLRG 715
>gi|424659794|ref|ZP_18097043.1| DNA ligase, NAD-dependent [Vibrio cholerae HE-16]
gi|408051362|gb|EKG86453.1| DNA ligase, NAD-dependent [Vibrio cholerae HE-16]
Length = 669
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 273/670 (40%), Positives = 400/670 (59%), Gaps = 34/670 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S + ++TEL++ LH H + YY+ D P I D +YD+L+ EL ++E +PEL++ DS +
Sbjct: 1 MSNVEQKLTELRQILHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + V H M+SLDN F D ++ F +R+T+ L ++ + E K DG+A
Sbjct: 61 RVGGHPLDAFESVVHEIPMLSLDNAFDDSELESFYRRMTDRLPAVQHSAFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGRELATSHY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL IC E ++ + ++ FY+ I +R +L YEIDGVV K++ + Q++L
Sbjct: 241 QRFLQLKGWGLPICPETKPVTSLTEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTVV+ R+G+VIP+I S +L RP ++K P CP+C S + +E
Sbjct: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKPIVFPTRCPVCQSDVERVEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARCSG I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 421 EAVARCSGGLI-CQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ A+ K+K TT +F+YALGIR VGE TA LA +F +LE +
Sbjct: 480 GELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQ 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+ EQ + +P +G F Q ++ +I++L + GI W
Sbjct: 540 QASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAG 599
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L+ + K G KV +SKNT+ + G+ G KL KA +L I++
Sbjct: 600 KIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKAAELGIQVF 659
Query: 638 DEKNFVKIVK 647
DE+ ++ +K
Sbjct: 660 DEQALIEFLK 669
>gi|149192011|ref|ZP_01870239.1| NAD-dependent DNA ligase LigA [Vibrio shilonii AK1]
gi|148834147|gb|EDL51156.1| NAD-dependent DNA ligase LigA [Vibrio shilonii AK1]
Length = 667
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 275/663 (41%), Positives = 404/663 (60%), Gaps = 34/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ ELK++LH H + YY+ D+P I D +YD+L+ EL IE ++P+ +T DS +Q VG +
Sbjct: 5 RLNELKEQLHYHGVKYYVEDSPEIPDVEYDRLMQELLAIEAEHPDWVTVDSPSQRVGGLP 64
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
++ V H M+SLDN FSDED+ FNKRI + + T Y E+K DG+AV+L YE
Sbjct: 65 LDSFTQVKHEIPMLSLDNAFSDEDLDSFNKRICDRVNRTDIGAYCCEVKLDGLAVSLLYE 124
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I IPL L P +EVR EV + K F KLN+
Sbjct: 125 SGVLVQAATRGDGTTGENITENVRTISAIPLKLQGDDIPARIEVRGEVFMPKAGFAKLNE 184
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I + L F+A+ +G + G +P+SH +
Sbjct: 185 LAERKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSLGIVEGTELPASHFDRFLKL 244
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ +G + E ++ + ++ ++K I KR L YEIDGVV K++ ++ Q++LGF +RA
Sbjct: 245 KSLGFPMGPETKRVNSIEEVKAYHKAIQEKRDELEYEIDGVVIKVDDIALQEQLGFVARA 304
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + ++ Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 305 PRWAIAYKFPAQEEITVLNSVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIER 364
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
+++GD+V++ R+G+VIP+I S + RP D+K P+ CP+C S I IE +ARC
Sbjct: 365 LGVKVGDSVIIRRAGDVIPQIVSYVPERRPADAKEIVFPSECPVCASLIERIEGEAVARC 424
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK L+HF SRKA+++ GLG+K+IE+LV+ +V T DL+K++ L L
Sbjct: 425 TGGLV-CQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDKEMVETPADLFKLSVGQLTIL 483
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A+ SK TT +RF+Y+LGIR VGE TA L+ +F+ LE + AT +Q
Sbjct: 484 ERMGPKSAQNVVNALNVSKETTLARFLYSLGIREVGEATAANLSTHFETLENVMNATHDQ 543
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L+ +P +G K F ++ +I L GI+W
Sbjct: 544 LIEVPDVGEIVAKHIRFFFAAESNQKVIEALIAAGIHWAAVEAPAEDTPQPLAGKTVVLT 603
Query: 595 -----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
LN + K G KV +SK T+ L G+ G KL KA +LNI+I E + +
Sbjct: 604 GSLSQLNRNDAKAALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELNIEIRTEDDLI 663
Query: 644 KIV 646
+++
Sbjct: 664 ELI 666
>gi|258621988|ref|ZP_05717017.1| DNA ligase [Vibrio mimicus VM573]
gi|424808115|ref|ZP_18233517.1| DNA ligase [Vibrio mimicus SX-4]
gi|258585741|gb|EEW10461.1| DNA ligase [Vibrio mimicus VM573]
gi|342324652|gb|EGU20433.1| DNA ligase [Vibrio mimicus SX-4]
Length = 670
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 275/671 (40%), Positives = 399/671 (59%), Gaps = 35/671 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S + R+ EL++ LH H + YY+ D P I D +YD+L+ EL +E PEL+T DS +
Sbjct: 1 MSNVEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELITPDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + V H M+SLDN F D ++ F +R+T+ + + + E K DG+A
Sbjct: 61 RVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRIPAVQQSHFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPVRLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ +I + L F+A+ VG + G + +SH
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIIDGGELATSHY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ ++ GL IC E ++ + ++ FY+ I +R +L YEIDGVV K++ + Q++L
Sbjct: 241 QRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKVDDIRLQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTVV+ R+G+VIP+I S +L RP D+K P CP+C S+I IE
Sbjct: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAKPIVFPACCPVCQSEIERIEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+G I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 421 EAVARCTGGLI-CQAQRKEALKHFVSRKAMDVDGLGDKVIEQLVDREMVSTPADLFRLRA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ A+ K+K TT RF+YALGIR VGE TA LA +F L+ +
Sbjct: 480 GELTILERMGPKSAQNVIDALNKAKQTTLPRFLYALGIREVGEATALNLAQHFLTLDAIA 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+ +QL+ +P +G F Q ++ +I++L ++GI W
Sbjct: 540 QASMDQLIEVPDVGGVVASHLHAFFAQSRNQQVIAELIELGITWPAMAVASSIAADSALA 599
Query: 595 ------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
L+ + K G KV +SKNT+ + G+ G KL KA +L I++
Sbjct: 600 GKVVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQV 659
Query: 637 LDEKNFVKIVK 647
LDE+ + +K
Sbjct: 660 LDEQALIDFLK 670
>gi|22125389|ref|NP_668812.1| NAD-dependent DNA ligase LigA [Yersinia pestis KIM10+]
gi|45442391|ref|NP_993930.1| NAD-dependent DNA ligase LigA [Yersinia pestis biovar Microtus str.
91001]
gi|108808172|ref|YP_652088.1| NAD-dependent DNA ligase LigA [Yersinia pestis Antiqua]
gi|108811556|ref|YP_647323.1| NAD-dependent DNA ligase LigA [Yersinia pestis Nepal516]
gi|145599373|ref|YP_001163449.1| NAD-dependent DNA ligase LigA [Yersinia pestis Pestoides F]
gi|149365146|ref|ZP_01887181.1| DNA ligase [Yersinia pestis CA88-4125]
gi|162420672|ref|YP_001607138.1| NAD-dependent DNA ligase LigA [Yersinia pestis Angola]
gi|165926903|ref|ZP_02222735.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165940356|ref|ZP_02228875.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
IP275]
gi|166011271|ref|ZP_02232169.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166212520|ref|ZP_02238555.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167398917|ref|ZP_02304441.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167421338|ref|ZP_02313091.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167424444|ref|ZP_02316197.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|167470665|ref|ZP_02335369.1| DNA ligase, NAD-dependent [Yersinia pestis FV-1]
gi|218930038|ref|YP_002347913.1| NAD-dependent DNA ligase LigA [Yersinia pestis CO92]
gi|229838581|ref|ZP_04458740.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229895648|ref|ZP_04510819.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Pestoides A]
gi|229899147|ref|ZP_04514290.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
str. India 195]
gi|229901826|ref|ZP_04516947.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Nepal516]
gi|270490015|ref|ZP_06207089.1| DNA ligase (NAD(+)) [Yersinia pestis KIM D27]
gi|384139165|ref|YP_005521867.1| NAD-dependent DNA ligase LigA [Yersinia pestis A1122]
gi|420548040|ref|ZP_15045879.1| DNA ligase, NAD-dependent [Yersinia pestis PY-01]
gi|420558932|ref|ZP_15055502.1| DNA ligase, NAD-dependent [Yersinia pestis PY-03]
gi|420564370|ref|ZP_15060354.1| DNA ligase, NAD-dependent [Yersinia pestis PY-04]
gi|420569403|ref|ZP_15064927.1| DNA ligase, NAD-dependent [Yersinia pestis PY-05]
gi|420575070|ref|ZP_15070051.1| DNA ligase, NAD-dependent [Yersinia pestis PY-06]
gi|420580392|ref|ZP_15074887.1| DNA ligase, NAD-dependent [Yersinia pestis PY-07]
gi|420585735|ref|ZP_15079732.1| DNA ligase, NAD-dependent [Yersinia pestis PY-08]
gi|420596241|ref|ZP_15089182.1| DNA ligase, NAD-dependent [Yersinia pestis PY-10]
gi|420601899|ref|ZP_15094217.1| DNA ligase, NAD-dependent [Yersinia pestis PY-11]
gi|420607338|ref|ZP_15099126.1| DNA ligase, NAD-dependent [Yersinia pestis PY-12]
gi|420612726|ref|ZP_15103963.1| DNA ligase, NAD-dependent [Yersinia pestis PY-13]
gi|420618095|ref|ZP_15108656.1| DNA ligase, NAD-dependent [Yersinia pestis PY-14]
gi|420623397|ref|ZP_15113419.1| DNA ligase, NAD-dependent [Yersinia pestis PY-15]
gi|420628475|ref|ZP_15118026.1| DNA ligase, NAD-dependent [Yersinia pestis PY-16]
gi|420633602|ref|ZP_15122627.1| DNA ligase, NAD-dependent [Yersinia pestis PY-19]
gi|420644300|ref|ZP_15132312.1| DNA ligase, NAD-dependent [Yersinia pestis PY-29]
gi|420649561|ref|ZP_15137074.1| DNA ligase, NAD-dependent [Yersinia pestis PY-32]
gi|420655204|ref|ZP_15142149.1| DNA ligase, NAD-dependent [Yersinia pestis PY-34]
gi|420660687|ref|ZP_15147066.1| DNA ligase, NAD-dependent [Yersinia pestis PY-36]
gi|420665995|ref|ZP_15151830.1| DNA ligase, NAD-dependent [Yersinia pestis PY-42]
gi|420676218|ref|ZP_15161131.1| DNA ligase, NAD-dependent [Yersinia pestis PY-46]
gi|420687146|ref|ZP_15170937.1| DNA ligase, NAD-dependent [Yersinia pestis PY-48]
gi|420703910|ref|ZP_15185222.1| DNA ligase, NAD-dependent [Yersinia pestis PY-54]
gi|420709344|ref|ZP_15189992.1| DNA ligase, NAD-dependent [Yersinia pestis PY-55]
gi|420720292|ref|ZP_15199579.1| DNA ligase, NAD-dependent [Yersinia pestis PY-58]
gi|420725775|ref|ZP_15204388.1| DNA ligase, NAD-dependent [Yersinia pestis PY-59]
gi|420731374|ref|ZP_15209409.1| DNA ligase, NAD-dependent [Yersinia pestis PY-60]
gi|420736426|ref|ZP_15213975.1| DNA ligase, NAD-dependent [Yersinia pestis PY-61]
gi|420741869|ref|ZP_15218867.1| DNA ligase, NAD-dependent [Yersinia pestis PY-63]
gi|420753029|ref|ZP_15228555.1| DNA ligase, NAD-dependent [Yersinia pestis PY-65]
gi|420769297|ref|ZP_15242519.1| DNA ligase, NAD-dependent [Yersinia pestis PY-72]
gi|420774281|ref|ZP_15247029.1| DNA ligase, NAD-dependent [Yersinia pestis PY-76]
gi|420779895|ref|ZP_15251977.1| DNA ligase, NAD-dependent [Yersinia pestis PY-88]
gi|420785477|ref|ZP_15256862.1| DNA ligase, NAD-dependent [Yersinia pestis PY-89]
gi|420790640|ref|ZP_15261493.1| DNA ligase, NAD-dependent [Yersinia pestis PY-90]
gi|420806585|ref|ZP_15275853.1| DNA ligase, NAD-dependent [Yersinia pestis PY-93]
gi|420811924|ref|ZP_15280656.1| DNA ligase, NAD-dependent [Yersinia pestis PY-94]
gi|420817459|ref|ZP_15285649.1| DNA ligase, NAD-dependent [Yersinia pestis PY-95]
gi|420822763|ref|ZP_15290411.1| DNA ligase, NAD-dependent [Yersinia pestis PY-96]
gi|420827848|ref|ZP_15294979.1| DNA ligase, NAD-dependent [Yersinia pestis PY-98]
gi|420833535|ref|ZP_15300119.1| DNA ligase, NAD-dependent [Yersinia pestis PY-99]
gi|420838404|ref|ZP_15304518.1| DNA ligase, NAD-dependent [Yersinia pestis PY-100]
gi|420843593|ref|ZP_15309224.1| DNA ligase, NAD-dependent [Yersinia pestis PY-101]
gi|420849252|ref|ZP_15314310.1| DNA ligase, NAD-dependent [Yersinia pestis PY-102]
gi|420860109|ref|ZP_15323683.1| DNA ligase, NAD-dependent [Yersinia pestis PY-113]
gi|421764493|ref|ZP_16201282.1| NAD-dependent DNA ligase LigA [Yersinia pestis INS]
gi|122980211|sp|Q1CJV7.1|DNLJ_YERPN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|123372308|sp|Q1C5X9.1|DNLJ_YERPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|123776939|sp|Q7CJF3.1|DNLJ_YERPE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|166216255|sp|A4TMG4.1|DNLJ_YERPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|254781914|sp|A9QZH0.1|DNLJ_YERPG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|21958274|gb|AAM85063.1|AE013752_4 DNA ligase [Yersinia pestis KIM10+]
gi|45437255|gb|AAS62807.1| DNA ligase [Yersinia pestis biovar Microtus str. 91001]
gi|108775204|gb|ABG17723.1| DNA ligase [Yersinia pestis Nepal516]
gi|108780085|gb|ABG14143.1| DNA ligase [Yersinia pestis Antiqua]
gi|115348649|emb|CAL21593.1| DNA ligase [Yersinia pestis CO92]
gi|145211069|gb|ABP40476.1| DNA ligase [Yersinia pestis Pestoides F]
gi|149291559|gb|EDM41633.1| DNA ligase [Yersinia pestis CA88-4125]
gi|162353487|gb|ABX87435.1| DNA ligase, NAD-dependent [Yersinia pestis Angola]
gi|165911711|gb|EDR30369.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
IP275]
gi|165921254|gb|EDR38478.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165989949|gb|EDR42250.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166206451|gb|EDR50931.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166960827|gb|EDR56848.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167051421|gb|EDR62829.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167056326|gb|EDR66095.1| DNA ligase, NAD-dependent [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|229680722|gb|EEO76817.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Nepal516]
gi|229687549|gb|EEO79622.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
str. India 195]
gi|229694947|gb|EEO84994.1| DNA ligase, NAD(+)-dependent [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229701454|gb|EEO89482.1| DNA ligase, NAD(+)-dependent [Yersinia pestis Pestoides A]
gi|270338519|gb|EFA49296.1| DNA ligase (NAD(+)) [Yersinia pestis KIM D27]
gi|342854294|gb|AEL72847.1| NAD-dependent DNA ligase LigA [Yersinia pestis A1122]
gi|391423879|gb|EIQ86319.1| DNA ligase, NAD-dependent [Yersinia pestis PY-01]
gi|391425062|gb|EIQ87376.1| DNA ligase, NAD-dependent [Yersinia pestis PY-03]
gi|391438852|gb|EIQ99562.1| DNA ligase, NAD-dependent [Yersinia pestis PY-04]
gi|391439997|gb|EIR00603.1| DNA ligase, NAD-dependent [Yersinia pestis PY-05]
gi|391443785|gb|EIR04072.1| DNA ligase, NAD-dependent [Yersinia pestis PY-06]
gi|391455706|gb|EIR14803.1| DNA ligase, NAD-dependent [Yersinia pestis PY-07]
gi|391456670|gb|EIR15677.1| DNA ligase, NAD-dependent [Yersinia pestis PY-08]
gi|391471772|gb|EIR29302.1| DNA ligase, NAD-dependent [Yersinia pestis PY-10]
gi|391473293|gb|EIR30683.1| DNA ligase, NAD-dependent [Yersinia pestis PY-11]
gi|391473920|gb|EIR31257.1| DNA ligase, NAD-dependent [Yersinia pestis PY-12]
gi|391487669|gb|EIR43576.1| DNA ligase, NAD-dependent [Yersinia pestis PY-13]
gi|391489291|gb|EIR45058.1| DNA ligase, NAD-dependent [Yersinia pestis PY-15]
gi|391489946|gb|EIR45638.1| DNA ligase, NAD-dependent [Yersinia pestis PY-14]
gi|391503698|gb|EIR57868.1| DNA ligase, NAD-dependent [Yersinia pestis PY-16]
gi|391503950|gb|EIR58090.1| DNA ligase, NAD-dependent [Yersinia pestis PY-19]
gi|391519536|gb|EIR72164.1| DNA ligase, NAD-dependent [Yersinia pestis PY-29]
gi|391521449|gb|EIR73914.1| DNA ligase, NAD-dependent [Yersinia pestis PY-34]
gi|391522387|gb|EIR74778.1| DNA ligase, NAD-dependent [Yersinia pestis PY-32]
gi|391534531|gb|EIR85700.1| DNA ligase, NAD-dependent [Yersinia pestis PY-36]
gi|391537284|gb|EIR88195.1| DNA ligase, NAD-dependent [Yersinia pestis PY-42]
gi|391552587|gb|EIS02000.1| DNA ligase, NAD-dependent [Yersinia pestis PY-46]
gi|391553649|gb|EIS02959.1| DNA ligase, NAD-dependent [Yersinia pestis PY-48]
gi|391573876|gb|EIS20855.1| DNA ligase, NAD-dependent [Yersinia pestis PY-54]
gi|391581790|gb|EIS27637.1| DNA ligase, NAD-dependent [Yersinia pestis PY-55]
gi|391594686|gb|EIS38811.1| DNA ligase, NAD-dependent [Yersinia pestis PY-58]
gi|391597547|gb|EIS41361.1| DNA ligase, NAD-dependent [Yersinia pestis PY-60]
gi|391598948|gb|EIS42617.1| DNA ligase, NAD-dependent [Yersinia pestis PY-59]
gi|391611913|gb|EIS54042.1| DNA ligase, NAD-dependent [Yersinia pestis PY-61]
gi|391612540|gb|EIS54600.1| DNA ligase, NAD-dependent [Yersinia pestis PY-63]
gi|391624959|gb|EIS65526.1| DNA ligase, NAD-dependent [Yersinia pestis PY-65]
gi|391637895|gb|EIS76763.1| DNA ligase, NAD-dependent [Yersinia pestis PY-72]
gi|391647763|gb|EIS85359.1| DNA ligase, NAD-dependent [Yersinia pestis PY-76]
gi|391651511|gb|EIS88674.1| DNA ligase, NAD-dependent [Yersinia pestis PY-88]
gi|391656292|gb|EIS92945.1| DNA ligase, NAD-dependent [Yersinia pestis PY-89]
gi|391660838|gb|EIS96950.1| DNA ligase, NAD-dependent [Yersinia pestis PY-90]
gi|391677779|gb|EIT12055.1| DNA ligase, NAD-dependent [Yersinia pestis PY-93]
gi|391679488|gb|EIT13616.1| DNA ligase, NAD-dependent [Yersinia pestis PY-94]
gi|391691756|gb|EIT24656.1| DNA ligase, NAD-dependent [Yersinia pestis PY-95]
gi|391694731|gb|EIT27364.1| DNA ligase, NAD-dependent [Yersinia pestis PY-96]
gi|391696448|gb|EIT28935.1| DNA ligase, NAD-dependent [Yersinia pestis PY-98]
gi|391708294|gb|EIT39565.1| DNA ligase, NAD-dependent [Yersinia pestis PY-99]
gi|391712122|gb|EIT43028.1| DNA ligase, NAD-dependent [Yersinia pestis PY-100]
gi|391712829|gb|EIT43669.1| DNA ligase, NAD-dependent [Yersinia pestis PY-101]
gi|391724602|gb|EIT54165.1| DNA ligase, NAD-dependent [Yersinia pestis PY-102]
gi|391728385|gb|EIT57502.1| DNA ligase, NAD-dependent [Yersinia pestis PY-113]
gi|411174604|gb|EKS44635.1| NAD-dependent DNA ligase LigA [Yersinia pestis INS]
Length = 670
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 262/664 (39%), Positives = 403/664 (60%), Gaps = 36/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P I D +YD+++ +L+ +E ++PEL+T DS TQ VG
Sbjct: 7 QINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SLDN F +E + F+KR+ + LK + + + ELK DG+AV+L YE
Sbjct: 67 LDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAEPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT N+ I IPL L+ P +EVR EV + + F +LN+
Sbjct: 127 NGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVFMPQAGFEQLNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SH + L +
Sbjct: 187 EARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGELPRSHIQCLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +G +++I FY++I R L ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T+++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIP++ ++ RP+D+K P+ CP+C S I +E +ARC
Sbjct: 367 LGLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITFPSQCPVCGSDIERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SR+A+++ G+G K+IE+LV V DL+++ L L
Sbjct: 427 TGGLF-CAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFQLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F+ L+ + A E
Sbjct: 486 DRMGPKSAQNLIAALEKAKQTTFARFLYALGIREVGEATAANLAAHFRTLDNLRAADIET 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L ++P +G K + F+++ ++ +I +L V + W
Sbjct: 546 LKSVPDVGEVVAKHVMNFLSEEHNQKVIEELEKV-VSWPEPQQIVVEESDSPFAGKTVVL 604
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ K G KV +SK T+ ++ G+ G KL KA +L IK++DE
Sbjct: 605 TGSLTILSRDEAKDRLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEM 664
Query: 643 VKIV 646
++++
Sbjct: 665 IRLL 668
>gi|417238018|ref|ZP_12035749.1| DNA ligase (NAD+) [Escherichia coli 9.0111]
gi|386213796|gb|EII24221.1| DNA ligase (NAD+) [Escherichia coli 9.0111]
Length = 671
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 401/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPLAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|416283391|ref|ZP_11646733.1| DNA ligase [Shigella boydii ATCC 9905]
gi|320180401|gb|EFW55332.1| DNA ligase [Shigella boydii ATCC 9905]
Length = 671
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL ++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWSAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|15802944|ref|NP_288973.1| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str.
EDL933]
gi|12516784|gb|AAG57530.1|AE005471_7 DNA ligase [Escherichia coli O157:H7 str. EDL933]
Length = 671
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/664 (40%), Positives = 400/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYXXXEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTYCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWXAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|420381331|ref|ZP_14880781.1| DNA ligase, NAD-dependent [Shigella dysenteriae 225-75]
gi|391300171|gb|EIQ58095.1| DNA ligase, NAD-dependent [Shigella dysenteriae 225-75]
Length = 671
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF L+ + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLKALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|419340848|ref|ZP_13882312.1| DNA ligase, NAD-dependent [Escherichia coli DEC12E]
gi|378187759|gb|EHX48370.1| DNA ligase, NAD-dependent [Escherichia coli DEC12E]
Length = 671
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/664 (40%), Positives = 401/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA L YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLVAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|419914653|ref|ZP_14433044.1| NAD-dependent DNA ligase LigA [Escherichia coli KD1]
gi|388385977|gb|EIL47639.1| NAD-dependent DNA ligase LigA [Escherichia coli KD1]
Length = 671
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 401/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ FY ++ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D + P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDPREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|218690549|ref|YP_002398761.1| NAD-dependent DNA ligase LigA [Escherichia coli ED1a]
gi|254781322|sp|B7MY64.1|DNLJ_ECO81 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|218428113|emb|CAR09030.2| DNA ligase, NAD(+)-dependent [Escherichia coli ED1a]
Length = 671
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ FY ++ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGLKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|260774893|ref|ZP_05883794.1| DNA ligase [Vibrio coralliilyticus ATCC BAA-450]
gi|260609148|gb|EEX35306.1| DNA ligase [Vibrio coralliilyticus ATCC BAA-450]
Length = 669
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 271/663 (40%), Positives = 407/663 (61%), Gaps = 34/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ +L++ LH H + YY+ DNP + D +YD+L+ EL ++E ++P+L++ DS +Q VG
Sbjct: 8 RLNQLRETLHYHGVKYYVEDNPEVPDAEYDRLMRELLELEAEHPDLVSIDSPSQRVGGQP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SLDN F DE++ F+KR+++ + + + E K DG+AV+L YE
Sbjct: 68 LDGFQSVTHEIPMLSLDNAFDDEELESFHKRMSDRIPTAEFNVFCCEPKLDGLAVSLLYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I IPL L+ + P+ +EVR EV + K+ F KLN+
Sbjct: 128 NGILVQAATRGDGTTGENITENVRTIKSIPLKLSGQGWPQRIEVRGEVFMPKEGFDKLNQ 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I + L F+A+ VG + G+ + SH E
Sbjct: 188 QAQKKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVEGIALSESHYERFLQL 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL +C E ++ + ++ +Y+ I +R LPYEIDGVV K++ ++ Q++LGF +RA
Sbjct: 248 KGWGLPMCPETRRVANLTEVKAYYQDILERREALPYEIDGVVIKVDDIALQEQLGFVARA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 308 PRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIER 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
+++GD+V++ R+G+VIP+I S I RP +++ P CP+C+S++ IE +ARC
Sbjct: 368 LGVKVGDSVIIRRAGDVIPQIVSVIEERRPGNARDIVFPERCPVCSSEVERIEGEAVARC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG + C AQRK L+HF SRKA+++ GLG+K+IE+LV+ +V T DL+K++ + L
Sbjct: 428 SGGLV-CQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDREMVETPADLFKLSAGVITVL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A+ ++KLTT RF+Y+LGIR VGE TA LA YFK L+ + A EQ
Sbjct: 487 DRMGPKSAQNVVDALNQAKLTTLPRFLYSLGIREVGEATAANLAQYFKTLDAVKAANHEQ 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L+ + IG I F Q ++ +I L D GI W
Sbjct: 547 LIEVSDIGDIVASHVIAFFAQDKNQQVIQDLLDQGIEWPEIEEQSEDTPQPLAGKTVVLT 606
Query: 595 -----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
L+ + K G KV +SK T+ L G+ G KL KA +L I+I E++ V
Sbjct: 607 GSLSQLSRNDAKSALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLV 666
Query: 644 KIV 646
++
Sbjct: 667 DLI 669
>gi|300897228|ref|ZP_07115672.1| DNA ligase, NAD-dependent [Escherichia coli MS 198-1]
gi|300358986|gb|EFJ74856.1| DNA ligase, NAD-dependent [Escherichia coli MS 198-1]
Length = 671
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 403/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQERLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + ++GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFKVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|375131665|ref|YP_004993765.1| DNA ligase [Vibrio furnissii NCTC 11218]
gi|315180839|gb|ADT87753.1| DNA ligase [Vibrio furnissii NCTC 11218]
Length = 669
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 272/664 (40%), Positives = 401/664 (60%), Gaps = 34/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+TELK LH H I YY+ D+P I D +YD+L+ EL +E ++PEL+T DS +Q VG
Sbjct: 7 RLTELKDTLHYHAIRYYVEDDPTIPDAEYDRLMRELLDLEARHPELVTPDSPSQRVGGAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F D+++ F++R+ + + K ++ E K DG+AV+L Y
Sbjct: 67 LAGFEQVTHEIPMLSLDNAFDDDELNSFHRRMGDRVLAAKTAKFCCEPKLDGLAVSLLYV 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I IPL L P +EVR EV + K F K+N
Sbjct: 127 DGVLVQAATRGDGTTGENITENVRTIKSIPLRLQGTGWPTRIEVRGEVFMPKAGFEKMNA 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I + L F+A+ VG ++G + SH E
Sbjct: 187 EALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVIQGGTLVDSHYERFLQL 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + E ++ ++++ +Y+ I +R LPYEIDGVV K++ ++ Q++LGF +RA
Sbjct: 247 KGWGLPMSPETKRVASLDEVKVYYQDIMTRRSELPYEIDGVVIKVDDIALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 307 PRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTVV+ R+G+VIP+I S + LRP ++ P CP+C S + IE +ARC
Sbjct: 367 LGVKIGDTVVIRRAGDVIPQIVSVVNELRPETAREILFPAQCPVCQSDVERIEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+++ L L
Sbjct: 427 SGGLV-CQAQRKEALKHFVSRKALDVDGLGDKVIEQLVDKEMVSTPADLFRLRAGELTVL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A NI+ A+ +K TT RF+Y+LGIR VGE TA LA++F L+ + +AT EQ
Sbjct: 486 ERMGPKSAQNIVNALNTAKATTLPRFLYSLGIREVGEATAMNLAHHFLTLDAIREATIEQ 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L+ +P +G+ F Q ++ ++ +L +GI+W
Sbjct: 546 LIEVPDVGTIVASHVHAFFAQERNQKVVEELIALGIHWQAIAPKTDDEPQPLAGKVVVLT 605
Query: 595 -----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
L+ + K G KV +SKNT+ L G+ G KL KA +L I+I DE++ +
Sbjct: 606 GTLSQLSRSDAKAALQALGAKVTGSVSKNTDILFAGEAAGSKLAKAQELGIEICDEEDLI 665
Query: 644 KIVK 647
+++
Sbjct: 666 AMIR 669
>gi|421447035|ref|ZP_15896439.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|396075297|gb|EJI83570.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
Length = 671
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 263/664 (39%), Positives = 398/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L++EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMWELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY+ + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQTATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|417690532|ref|ZP_12339753.1| DNA ligase, NAD-dependent [Shigella boydii 5216-82]
gi|332088205|gb|EGI93327.1| DNA ligase, NAD-dependent [Shigella boydii 5216-82]
Length = 671
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
R+ K A N++ +++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 KRMGPKSAQNVVNSLEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWSAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|256822391|ref|YP_003146354.1| NAD-dependent DNA ligase [Kangiella koreensis DSM 16069]
gi|256795930|gb|ACV26586.1| DNA ligase, NAD-dependent [Kangiella koreensis DSM 16069]
Length = 667
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 267/662 (40%), Positives = 403/662 (60%), Gaps = 34/662 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S+L RV EL+ L +N YY+ D+P + D +YD+LL EL++IE ++PEL++ DS TQ
Sbjct: 1 MSELEKRVAELRVTLDNYNHQYYVLDDPSVPDAEYDRLLRELQQIESEHPELISSDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + V H M+SLDN SD++++ FNKR+ + L T+NIEY+ E K DG+A
Sbjct: 61 RVGAKPDNGFQEVTHELPMLSLDNAMSDDELVSFNKRVQDRLNTTENIEYVCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L + +TRGDG GENIT N+ I IPL L PE +E+R EV + K
Sbjct: 121 VSLLYENGQLVRGATRGDGTTGENITLNVRTIRAIPLKLRGTETPERIEIRGEVFMPKAV 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELR-GMNMPSSH 249
F LN+ G K F NPRNAAAG LRQL+P I + L F+A+ +G + + ++H
Sbjct: 181 FESLNEEAREQGAKSFANPRNAAAGSLRQLDPSITAKRQLSFYAYSMGLVSDDFKLANTH 240
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
+ L + GL + E ++ G + +++ I+ KR +L YEIDGVV K+N + Q++
Sbjct: 241 FDRLEQIKTFGLPVSSEIKLVKGAEGCLAYHQSISEKRDSLGYEIDGVVNKVNSIELQEE 300
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF +RAPR+A+A+KF ++E +T++ ++ Q+GRTG +TPVA L+PV + G+T++ ATLH
Sbjct: 301 LGFVARAPRWAIAHKFPAQEEMTQLIGVDFQVGRTGALTPVARLEPVSVGGVTVSNATLH 360
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R + +IGDTV++ R+G+VIP++ S IL RP++++I P CP+CNS + E
Sbjct: 361 NMDEIKRLDARIGDTVIIRRAGDVIPQVVSIILEKRPSNAEIILTPEQCPVCNSPVERTE 420
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
RC+G I C AQRK ++HF+SRKAM+I GLG K++E +V + DLY+I
Sbjct: 421 GEAAIRCTGGLI-CSAQRKEAIKHFASRKAMDIDGLGDKLVEIFAEKGMVQSISDLYRIK 479
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
++ LDR+ K A N++ A++ SK TT +F+Y+LGIR VGE TAK +A++F L+ +
Sbjct: 480 AGDIAALDRMGEKSAENLIGALEHSKNTTLPKFLYSLGIREVGEVTAKNIAHHFLTLDGI 539
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
KA++E+L ++P +G F + + I +L+D+G+ W
Sbjct: 540 IKASQEELESVPDVGPIVAHHIRAFFDNVENLEQIEELKDLGVNWPDIKKKSDDELPLKG 599
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
++ P K G KV +S T L+ G G KL+KA +L +++L
Sbjct: 600 KTYVITGTLEGISRPEAKAKLEALGAKVSGSVSSKTTALIAGASAGSKLKKAQELGVEVL 659
Query: 638 DE 639
D+
Sbjct: 660 DQ 661
>gi|433657066|ref|YP_007274445.1| DNA ligase [Vibrio parahaemolyticus BB22OP]
gi|432507754|gb|AGB09271.1| DNA ligase [Vibrio parahaemolyticus BB22OP]
Length = 670
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 277/663 (41%), Positives = 399/663 (60%), Gaps = 34/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ ELK+ LH H + YY+ DNP I D +YD+L+ EL +IE ++P+L+T DS +Q VG
Sbjct: 8 RLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIESQHPDLVTVDSPSQRVGGKP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F D ++ F+KR + + +Y E K DG+AV+L YE
Sbjct: 68 LSEFSQVTHEVPMLSLDNAFDDSELDSFHKRAQDRIGGESIKQYCCEPKLDGLAVSLLYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I+ IPL L P LEVR EV + K F KLN+
Sbjct: 128 NGILVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGEVFMPKAGFEKLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I ++ L F+A+ VG ++G ++ +SH E
Sbjct: 188 LARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGADLAASHYERFLQI 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL +C E + + + +Y+ I +R LPYEIDGVV KI+ ++ Q++LGF +RA
Sbjct: 248 KSWGLPMCPETKRVDSLADVKTYYQDILQRRDALPYEIDGVVIKIDDIAVQERLGFVARA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 308 PRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIER 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ S I RP ++ P CP+C S + IE + RC
Sbjct: 368 LQVKIGDQVVIRRAGDVIPQVVSVIKERRPETARDIIFPTQCPVCGSHVERIEGEAVTRC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++ L L
Sbjct: 428 TGGLV-CQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDREMVETPADLFKLSAGVLTVL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A NI+ A++KSKLTT RF+Y+LGIR VGE TA LA +FK+LE + ATEEQ
Sbjct: 487 ERMGPKSAQNIVNALEKSKLTTLPRFLYSLGIREVGEATAANLAQHFKSLEAIQAATEEQ 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNP---------------- 598
L+ + IG K F + ++ ++ L GI+W ++ P
Sbjct: 547 LIAVQDIGVVVAKHITTFFEEEKNQAVVQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLT 606
Query: 599 ---------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
+ G KV +SK T+ L G+ G KL KA +L I+I E++ +
Sbjct: 607 GTLSQLGRTEAKEALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLL 666
Query: 644 KIV 646
+++
Sbjct: 667 ELI 669
>gi|254489942|ref|ZP_05103137.1| DNA ligase, NAD-dependent [Methylophaga thiooxidans DMS010]
gi|224465027|gb|EEF81281.1| DNA ligase, NAD-dependent [Methylophaga thiooxydans DMS010]
Length = 673
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 264/667 (39%), Positives = 401/667 (60%), Gaps = 32/667 (4%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+++ R L++ ++ +N YY+ DNP + D +YD+L EL+++E+ +PELLT DS TQ
Sbjct: 5 TEVQQRAATLRELINHYNYLYYVTDNPEVPDAEYDRLFSELQQLEQTHPELLTADSPTQR 64
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + + H M+SLDN F E + F+KR+ + L + Y AE K DG+A+
Sbjct: 65 VGGEVLDKFAEIEHAMPMLSLDNVFDQEALTAFDKRVRDWLNTDQPQIYAAEPKLDGLAI 124
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
++RYE G L QA+TRGDGN GE++T N+ I +PL L+ P ++EVR E+ + K F
Sbjct: 125 SIRYEQGVLVQAATRGDGNYGEDVTANVRTIKSVPLKLSGDNIPAIVEVRGEIFMPKDGF 184
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
+LN+ + K F NPRNAAAG LRQL+ KI + L + +G+G + G P+SH+E
Sbjct: 185 ERLNQSQLDNNKKVFVNPRNAAAGSLRQLDSKITATRPLEIYCYGIGYIEGAARPASHTE 244
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
++ G I E L G+ + +++ +R +L Y+IDGVV K++ + Q++LG
Sbjct: 245 AMSMIANWGCRISPELKKLEGLEACHRYIEQLGERRDSLAYDIDGVVLKVDNTALQERLG 304
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F SRAPR+A+AYKF ++E +T I+ I IQ+GRTG +TPVA LKPV + G+T++ ATLHNE
Sbjct: 305 FVSRAPRWAIAYKFPAQEEMTTIEDIEIQVGRTGALTPVARLKPVFVGGVTVSNATLHNE 364
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI RK+++IGD V+V R+G+VIP++ ILS R + + F +P CP+C S +
Sbjct: 365 DEIRRKDVRIGDQVIVRRAGDVIPEVVKVILSKRTDTVREFVMPTQCPVCGSDVEREAGE 424
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
++RCSG C AQRK ++HF+SRKA+++ GLG K++E++V+A ++ A DL+ + +
Sbjct: 425 AVSRCSGGLF-CPAQRKEAIKHFASRKALDVDGLGDKLVEQMVDAELIKDAADLFVLTVE 483
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
L L+R+ K A+N++ AI+ SK T F RF+YALGIR VGE TA+ LA +F +L+ +
Sbjct: 484 QLAGLERMGQKSADNLVRAIKASKQTRFPRFLYALGIREVGEATARSLAMHFADLDALKA 543
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK---------- 601
A E L+ I +G F QP + +I++L DVG+ W +
Sbjct: 544 ADSEALVEIEDVGPIVAHHIETFFQQPHNLEVINRLIDVGVSWPQEEKSHSDSALSGKTI 603
Query: 602 ---------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
G KV +SK T+Y+V G G KL KA L+I ++DE
Sbjct: 604 VLTGTLVQMSRSEAKEKLLALGAKVAGSVSKKTDYVVAGADAGSKLTKAASLDISVVDEA 663
Query: 641 NFVKIVK 647
++ +K
Sbjct: 664 MLLEWLK 670
>gi|421380957|ref|ZP_15831013.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|421397275|ref|ZP_15847193.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|421407172|ref|ZP_15856981.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396002051|gb|EJI11056.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|396031735|gb|EJI40461.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396034464|gb|EJI43159.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
Length = 671
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 264/664 (39%), Positives = 397/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY+ + R L ++IDGVV K+N L+ QK+LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLALQKQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQTATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|319779225|ref|YP_004130138.1| DNA ligase [Taylorella equigenitalis MCE9]
gi|397661465|ref|YP_006502165.1| DNA ligase [Taylorella equigenitalis ATCC 35865]
gi|317109249|gb|ADU91995.1| DNA ligase [Taylorella equigenitalis MCE9]
gi|394349644|gb|AFN35558.1| DNA ligase [Taylorella equigenitalis ATCC 35865]
Length = 681
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 279/671 (41%), Positives = 417/671 (62%), Gaps = 47/671 (7%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
LK + H+ AYY+ DNP ISD +YD L+ +L E+ +PE +T DS +Q VG V +
Sbjct: 12 LKSLISVHDKAYYIDDNPQISDEEYDGLMRKLLDYEQAHPEWVTSDSPSQRVGGVALKIF 71
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
V H M+SL N F+ E++ F R+ + + + E+ E KFDG+A+++RYE G L
Sbjct: 72 NSVRHAVPMLSLGNVFNPEELTAFYNRMVEAVG-SDDFEFNCEPKFDGLAISIRYENGVL 130
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNI---KYPPELLEVRCEVLIYKKDFIKLNKY 197
K ASTRGDG GE++T + I +PL LN+ + P+++EVR E L+ + DF L K
Sbjct: 131 KTASTRGDGLTGEDVTAQVSTIRTVPLKLNVPSKEALPKIIEVRGEALMLRSDFDNLVKR 190
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELR--GMNMPSSHSELLNW 255
+ GL+ F NPRNAAAG LRQL+PKI + L F+A+G+GE + G P S S+LL++
Sbjct: 191 QEEEGLQTFANPRNAAAGSLRQLDPKITAKRKLRFYAYGLGEFKSLGSEEPKSQSQLLDY 250
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
++G ++ SV G++ L+ F++ I KR LP++IDGVVYK++ Q+K+GF S+
Sbjct: 251 LSELGFAVTEYRSVKKGLDGLLNFFEHIKAKRDTLPFDIDGVVYKVDSFELQQKIGFVSK 310
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APRFA+A+KF +++ TK+ I +Q+GRTG +TPVA L+PV + G+T+ +ATLHNE EI
Sbjct: 311 APRFAIAHKFAAEQMQTKLLDIEVQVGRTGALTPVARLEPVFVGGVTVRKATLHNEDEIE 370
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
RKN+ IGDTV+V R+G+VIP++ S++ LRP D+ F +P ICP+C S + E +AR
Sbjct: 371 RKNLMIGDTVIVRRAGDVIPEVLESVIDLRPEDAVKFVMPTICPVCGSAVEKPEGEAVAR 430
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G + C AQ G+ H SRKA+NI GLG K I+KLV+ + DL+K+ +L
Sbjct: 431 CTGGLV-CGAQITQGIIHAVSRKALNIEGLGDKHIQKLVSTEKIKRLDDLFKLTVDDLNI 489
Query: 496 LDRVSNK-----LANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L R + LA + IQ SK TT SRF++ALGIRHVGETTA++LA YF +L +
Sbjct: 490 LGRNAEDSKLEVLAPTLHARIQASKSTTLSRFLFALGIRHVGETTARDLAKYFGDLYSIM 549
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--------NPN--- 599
+A+ E+L+++P +G + F N+P +R +IS L ++G + LN NP
Sbjct: 550 QASTEELVSVPNVGEVMATSIHTFFNEPHNREVISNLLELG-FVLNAEEEAIQINPAIAG 608
Query: 600 ----------------------TKGGKVVNFISKNTNYLVKGQKPG-KKLEKAIKLNIKI 636
+ GG++ + +SK T+YL+ G +PG K++KA ++ KI
Sbjct: 609 HSFVVTGTLENWKRDEISQVIISSGGRINSSVSKKTDYLLMGAEPGDSKVKKAQEVGTKI 668
Query: 637 LDEKNFVKIVK 647
L E F+++++
Sbjct: 669 LSEAEFIQMLE 679
>gi|398794613|ref|ZP_10554651.1| DNA ligase, NAD-dependent [Pantoea sp. YR343]
gi|398208389|gb|EJM95117.1| DNA ligase, NAD-dependent [Pantoea sp. YR343]
Length = 672
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 260/665 (39%), Positives = 401/665 (60%), Gaps = 36/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++T L+ L H Y++ D P I D +YD+L+ +L+++E +P+L+T DS TQ VG
Sbjct: 7 QITALRTTLRHHEYLYHVMDTPEIPDAEYDRLMVQLRELESAHPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F + + FNKR+ + LK T + Y ELK DG+AV+L YE
Sbjct: 67 LAAFEQVRHEVPMLSLDNTFDEAGFLAFNKRVQDRLKSTDELTYCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT N+ IH IPL L+ P +EVR EV I + F KLN+
Sbjct: 127 DGLLVRAATRGDGTTGENITANVRTIHAIPLRLHGDNIPARVEVRGEVFITESGFEKLNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +G G L G MP+SH + L +
Sbjct: 187 EARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEMPASHWQRLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + ++++ FY+++ +R +L ++IDGVV K++ + Q++LGF +RA
Sbjct: 247 KAWGLPVTDRIRLAHSADEVLAFYRQVEQERPSLGFDIDGVVIKVDSQALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLHNADEIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + + S P +++ P+ CP+C S + +E ++ RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVESECPQETREIVFPSHCPVCGSDVERVEGEVVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V+T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVLTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TT +RF+YALGIR VGE TA LAN+F LE + A +
Sbjct: 486 DRMGPKSAQNVVDALEKAKSTTLARFLYALGIREVGEATAANLANHFGELEKVMNADLDA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW--------------------- 594
L+ + +G F+++ +R++I L ++G++W
Sbjct: 546 LIEVQDVGKVVATHVRNFMDEESNRVVIRDLTEEIGVHWPKVEVVNVEEIDSPFAGKTVV 605
Query: 595 -------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
+N + K G KV +SK T+ L+ G+ G KL KA +L I ++DE
Sbjct: 606 LTGSLSQMNRDDAKERLVALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIPVIDEAE 665
Query: 642 FVKIV 646
++++
Sbjct: 666 MIRLL 670
>gi|153838362|ref|ZP_01991029.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus AQ3810]
gi|149748221|gb|EDM59080.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus AQ3810]
Length = 670
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 277/663 (41%), Positives = 399/663 (60%), Gaps = 34/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ ELK+ LH H + YY+ DNP I D +YD+L+ EL +IE ++P+L+T DS +Q VG
Sbjct: 8 RLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTVDSPSQRVGGKP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F D ++ F+KR + + +Y E K DG+AV+L YE
Sbjct: 68 LSEFSQVTHEVPMLSLDNAFDDSELDSFHKRAQDRIGGESIKQYCCEPKLDGLAVSLLYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I+ IPL L P LEVR EV + K F KLN+
Sbjct: 128 NGILVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGEVFMPKAGFEKLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I ++ L F+A+ VG ++G ++ +SH E
Sbjct: 188 LARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGADLAASHYERFLQI 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL +C E + + + +Y+ I +R LPYEIDGVV KI+ ++ Q++LGF +RA
Sbjct: 248 KSWGLPMCPETKRVDSLADVKTYYQDILQRRDALPYEIDGVVIKIDDIAVQERLGFVARA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 308 PRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIER 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ S I RP ++ P CP+C S + IE + RC
Sbjct: 368 LQVKIGDQVVIRRAGDVIPQVVSVIKERRPETARDIIFPTQCPVCGSHVERIEGEAVTRC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++ L L
Sbjct: 428 TGGLV-CQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDREMVETPADLFKLSAGVLTVL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A NI+ A++KSKLTT RF+Y+LGIR VGE TA LA +FK+LE + ATEEQ
Sbjct: 487 ERMGPKSAQNIVNALEKSKLTTLPRFLYSLGIREVGEATAANLAQHFKSLEAIQAATEEQ 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNP---------------- 598
L+ + IG K F + ++ ++ L GI+W ++ P
Sbjct: 547 LIAVQDIGVVVAKHITTFFEEEKNQAVVQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLT 606
Query: 599 ---------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
+ G KV +SK T+ L G+ G KL KA +L I+I E++ +
Sbjct: 607 GTLSQLGRTEAKEALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLL 666
Query: 644 KIV 646
+++
Sbjct: 667 ELI 669
>gi|86148411|ref|ZP_01066703.1| DNA ligase [Vibrio sp. MED222]
gi|85833825|gb|EAQ51991.1| DNA ligase [Vibrio sp. MED222]
Length = 670
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 274/669 (40%), Positives = 401/669 (59%), Gaps = 36/669 (5%)
Query: 13 KLSFRVT--ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
K S +VT +L++ LH H + YY+ D+P I D +YD+L+ +L K+EE+ PEL+T DS +Q
Sbjct: 2 KESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKLEEENPELVTVDSPSQ 61
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + V H M+SLDN FSD+D+ FNKR+++ + E K DG+A
Sbjct: 62 RVGGQPLDGFTQVTHEIPMLSLDNAFSDDDLDAFNKRMSDRAPTANLKTFCCEPKLDGLA 121
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L Y G L QA+TRGDG GENIT N+ I IPL L + PE +EVR EV + K
Sbjct: 122 VSLLYVKGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVFMPKAG 181
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F KLN+ G K F NPRNAAAG LRQL+ +I + L F+A+ VG ++G + +SH
Sbjct: 182 FDKLNEMALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVQGAELSNSHY 241
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL +C E LS + + +Y+ I +R L YEIDGVV K++ ++ Q+ L
Sbjct: 242 QRFLQLKAWGLPMCPETKQLSSLEDVKAYYQDIMTRRDTLAYEIDGVVIKVDDIAAQETL 301
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E +T + + Q+GRTG ITPVA L+P+ + G+T++ ATLHN
Sbjct: 302 GFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHN 361
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R +++GD+V++ R+G+VIP+I + + RP +K P+ CP+CNS + +E
Sbjct: 362 ADEIARLGVKVGDSVIIRRAGDVIPQIVAVVQDRRPETAKDIVFPDACPVCNSAVERVEG 421
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++
Sbjct: 422 EAVARCTGGLV-CQAQRKEALKHFVSRKALDVDGLGVKVIEQLVDREMVETPADLFKLSA 480
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
+ LDR+ K A N++ A+ K+K TT +RF+Y+LGIR VGE TA LA +FK LE +
Sbjct: 481 GVITVLDRMGPKSAQNVVSALNKAKDTTLARFLYSLGIREVGEATAMNLAQHFKTLELVQ 540
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
AT EQL+ + IG F +Q +R ++ QL ++G+ W
Sbjct: 541 AATHEQLVEVSDIGDIVASHLTSFFSQEKNRAVVDQLIELGVNWPAIEAVADDQELPLEG 600
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L K G KV +SK T+ L G+ G KL KA L I+I
Sbjct: 601 KVVVLTGSLSKLGRSEAKAALQALGAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIR 660
Query: 638 DEKNFVKIV 646
E++ + ++
Sbjct: 661 TEEDLIALI 669
>gi|28897574|ref|NP_797179.1| NAD-dependent DNA ligase LigA [Vibrio parahaemolyticus RIMD
2210633]
gi|260878266|ref|ZP_05890621.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AN-5034]
gi|260895418|ref|ZP_05903914.1| DNA ligase (NAD+) [Vibrio parahaemolyticus Peru-466]
gi|260903353|ref|ZP_05911748.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AQ4037]
gi|81728289|sp|Q87RJ4.1|DNLJ_VIBPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|28805786|dbj|BAC59063.1| DNA ligase [Vibrio parahaemolyticus RIMD 2210633]
gi|308088617|gb|EFO38312.1| DNA ligase (NAD+) [Vibrio parahaemolyticus Peru-466]
gi|308090169|gb|EFO39864.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AN-5034]
gi|308107994|gb|EFO45534.1| DNA ligase (NAD+) [Vibrio parahaemolyticus AQ4037]
Length = 670
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 277/663 (41%), Positives = 399/663 (60%), Gaps = 34/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ ELK+ LH H + YY+ DNP I D +YD+L+ EL +IE ++P+L+T DS +Q VG
Sbjct: 8 RLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTVDSPSQRVGGKP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F D ++ F+KR + + +Y E K DG+AV+L YE
Sbjct: 68 LSEFSQVTHEVPMLSLDNAFDDSELDSFHKRAQDRIGGESIKQYCCEPKLDGLAVSLLYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I+ IPL L P LEVR EV + K F KLN+
Sbjct: 128 NGILVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGEVFMPKAGFEKLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I ++ L F+A+ VG ++G ++ +SH E
Sbjct: 188 LARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGADLAASHYERFLQI 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL +C E + + + +Y+ I +R LPYEIDGVV KI+ ++ Q++LGF +RA
Sbjct: 248 KSWGLPMCPETKRVDSLADVKTYYQHILQRRDALPYEIDGVVIKIDDIAVQERLGFVARA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 308 PRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIER 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ S I RP ++ P CP+C S + IE + RC
Sbjct: 368 LQVKIGDQVVIRRAGDVIPQVVSVIKERRPETARDIIFPTQCPVCGSHVERIEGEAVTRC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++ L L
Sbjct: 428 TGGLV-CQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDREMVETPADLFKLSAGVLTVL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A NI+ A++KSKLTT RF+Y+LGIR VGE TA LA +FK+LE + ATEEQ
Sbjct: 487 ERMGPKSAQNIVNALEKSKLTTLPRFLYSLGIREVGEATAANLAQHFKSLEAIQAATEEQ 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNP---------------- 598
L+ + IG K F + ++ ++ L GI+W ++ P
Sbjct: 547 LIAVQDIGVVVAKHITTFFEEEQNQAVVQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLT 606
Query: 599 ---------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
+ G KV +SK T+ L G+ G KL KA +L I+I E++ +
Sbjct: 607 GTLSQLGRTEAKEALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLL 666
Query: 644 KIV 646
+++
Sbjct: 667 ELI 669
>gi|417673345|ref|ZP_12322800.1| DNA ligase, NAD-dependent [Shigella dysenteriae 155-74]
gi|332089820|gb|EGI94921.1| DNA ligase, NAD-dependent [Shigella dysenteriae 155-74]
Length = 671
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPSITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + ++ +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVKGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWSAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|297578580|ref|ZP_06940508.1| DNA ligase [Vibrio cholerae RC385]
gi|297536174|gb|EFH75007.1| DNA ligase [Vibrio cholerae RC385]
Length = 669
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 272/670 (40%), Positives = 401/670 (59%), Gaps = 34/670 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S + ++TEL++ LH H + YY+ D P I D +YD+L+ EL ++E +PEL++ DS +
Sbjct: 1 MSNVEQKLTELRQILHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + V H M+SLDN F D ++ F +R+T+ + ++ + E K DG+A
Sbjct: 61 RVGGRPLDAFESVVHEIPMLSLDNAFDDSELDSFYRRMTDRIPAVQHSAFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL IC E +++ + ++ FY+ I +R +L YEIDGVV K++ + Q++L
Sbjct: 241 QRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTVV+ R+G+VIP+I S +L RP ++K P CP+C S + +E
Sbjct: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARCSG I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 421 EAVARCSGGLI-CQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ A+ K+K TT +F+YALGIR VGE TA LA +F +LE +
Sbjct: 480 GELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQ 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+ EQ + +P +G F Q ++ +I++L + GI W
Sbjct: 540 QASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAG 599
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L+ + K G KV +SKNT+ + G+ G KL KA +L I++
Sbjct: 600 KIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVF 659
Query: 638 DEKNFVKIVK 647
DE+ ++ +K
Sbjct: 660 DEQALIEFLK 669
>gi|260598800|ref|YP_003211371.1| NAD-dependent DNA ligase LigA [Cronobacter turicensis z3032]
gi|260217977|emb|CBA32625.1| DNA ligase [Cronobacter turicensis z3032]
Length = 672
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/665 (39%), Positives = 394/665 (59%), Gaps = 36/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++T+L+ L H Y++ D P + D +YD+L+ EL+ +EE +PEL+T DS TQ VG
Sbjct: 7 KLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELVTPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F + + FNKR+ + LK T + Y ELK DG+AV+L YE
Sbjct: 67 LTAFSQVRHEVPMLSLDNVFDEASFLAFNKRVQDRLKNTDALVYCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+IT N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 DGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQTGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P++ + L FF +GVG L G +P SH L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGELPRSHMARLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ ++ FY+++ R L ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 KAWGLPVSDRIRLVKTPEDVLAFYRQVEADRPTLGFDIDGVVIKVDSLELQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E LT ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQLTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVVFPTQCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F LE + A+ +
Sbjct: 486 DRMGPKSAQNLVTALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALINASIDD 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW----------LNNP------- 598
L +P +G F + +R +I L +VGI+W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFEEESNRAVIRDLTEEVGIHWPAPQVVKAEEIDSPFAGKTVV 605
Query: 599 -----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G KV +SK T+ L+ G+ G KL KA +L I+++DE
Sbjct: 606 LTGSLSQMSRDDAKARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAE 665
Query: 642 FVKIV 646
++++
Sbjct: 666 MLRLL 670
>gi|417320473|ref|ZP_12107019.1| NAD-dependent DNA ligase LigA [Vibrio parahaemolyticus 10329]
gi|328473436|gb|EGF44284.1| NAD-dependent DNA ligase LigA [Vibrio parahaemolyticus 10329]
Length = 670
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 277/663 (41%), Positives = 398/663 (60%), Gaps = 34/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ ELK+ LH H + YY+ DNP I D +YD+L+ EL +IE ++P+L+T DS +Q VG
Sbjct: 8 RLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTVDSPSQRVGGKP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F D ++ F+KR + + +Y E K DG+AV+L YE
Sbjct: 68 LSEFSQVTHEVPMLSLDNAFDDSELDSFHKRAQDRIGGESIKQYCCEPKLDGLAVSLLYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I+ IPL L P LEVR EV + K F KLN+
Sbjct: 128 NGILVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGEVFMPKAGFEKLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I ++ L F+A+ VG ++G ++ +SH E
Sbjct: 188 LARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGADLAASHYERFLQI 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL +C E + + + +Y+ I +R LPYEIDGVV KI+ ++ Q +LGF +RA
Sbjct: 248 KSWGLPMCQETKRVDSLADVKTYYQDILQRRDALPYEIDGVVIKIDDIAVQDRLGFVARA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 308 PRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIER 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ S I RP ++ P CP+C S + IE + RC
Sbjct: 368 LQVKIGDQVVIRRAGDVIPQVVSVIKERRPETARDIIFPTQCPVCGSHVERIEGEAVTRC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++ L L
Sbjct: 428 TGGLV-CQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDREMVETPADLFKLSAGVLTVL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A NI+ A++KSKLTT RF+Y+LGIR VGE TA LA +FK+LE + ATEEQ
Sbjct: 487 ERMGPKSAQNIVNALEKSKLTTLPRFLYSLGIREVGEATAANLAQHFKSLEAIQAATEEQ 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNP---------------- 598
L+ + IG K F + ++ ++ L GI+W ++ P
Sbjct: 547 LIAVQDIGVVVAKHITTFFEEEQNQAVVQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLT 606
Query: 599 ---------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
+ G KV +SK T+ L G+ G KL KA +L I+I E++ +
Sbjct: 607 GTLSQLGRTEAKEALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLL 666
Query: 644 KIV 646
+++
Sbjct: 667 ELI 669
>gi|223041748|ref|ZP_03611941.1| DNA ligase [Actinobacillus minor 202]
gi|223017432|gb|EEF15850.1| DNA ligase [Actinobacillus minor 202]
Length = 680
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 275/660 (41%), Positives = 397/660 (60%), Gaps = 35/660 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+ +L + Y++ DNP++ D +YD+L+ ELK +E ++PEL+T DS TQ VG +
Sbjct: 19 LRNKLREYEYHYHVLDNPLVPDAEYDRLMNELKNLEWQHPELITPDSPTQRVGAKPLDGF 78
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-KNIEYIAELKFDGIAVNLRYEYGY 139
V H M+SLDN FSDED+ F +R+ + + + ++ + E K DG+AV++ Y G
Sbjct: 79 SQVTHELPMLSLDNAFSDEDLDGFLRRMESYISVAPSSLAFCCEPKLDGLAVSILYVNGV 138
Query: 140 LKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRY 199
L QA+TRGDG GE+IT NI I IPL L PP LEVR EV + +K F LN+
Sbjct: 139 LTQAATRGDGTTGEDITANIRTIRNIPLKLKTDNPPLRLEVRGEVFMPQKGFEALNQKAL 198
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHSELLNWYQK 258
G K F NPRNAAAG LRQL+PKI + L A+ +G + +PS+H E L W +
Sbjct: 199 EKGEKTFANPRNAAAGSLRQLDPKITAQRPLMLNAYSIGIYDSDDELPSTHFERLQWLKS 258
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
+G+ + E + G L++FY I KR L Y+IDG V K+N ++ Q++LGF SR+PR
Sbjct: 259 LGIPVNNEIRLEKGRENLLKFYADIQTKRPTLGYDIDGTVLKVNDIALQEQLGFISRSPR 318
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 319 WAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERLG 378
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
I IGDTV++ R+G+VIP+I + RP ++K P CPIC S ++ +E +ARC+G
Sbjct: 379 IAIGDTVIIRRAGDVIPQIIGIVAERRPKNAKKITFPTACPICGSAVVRVEGEAVARCTG 438
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
C AQRK L+HF SRKAM+I G+G+K+IE+L+ +V T DL+K++ L+RL+R
Sbjct: 439 GLF-CEAQRKEALKHFVSRKAMDIDGVGEKLIEQLMERELVHTPADLFKLDQVTLMRLER 497
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N L +I+K+K TT RF++ALGIR VGE TA LAN+F +L+ + AT EQL
Sbjct: 498 MGEKSAQNALNSIEKAKNTTLPRFLFALGIRDVGEATALNLANHFGSLDAIRAATFEQLQ 557
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--------NP------------ 598
+ +G ++F +P + ++ L G+ W N NP
Sbjct: 558 EVQDVGEVVANRIVRFWQEPHNVEVVEDLIQQGVVWQNIEQVEIADNPLKDKNVVLTGTL 617
Query: 599 ------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
G KV +S T+YL+ G+K G KL KA +L +K+L E++F+ IV
Sbjct: 618 SVLTRDQAKALLQGLGCKVSGSVSSKTDYLIAGEKAGSKLAKAQELGVKVLSEQDFLAIV 677
>gi|437841487|ref|ZP_20846670.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|435296607|gb|ELO72981.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
Length = 685
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/665 (39%), Positives = 400/665 (60%), Gaps = 35/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY+ + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIAFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIVK 647
+++++
Sbjct: 666 IRLLE 670
>gi|156933031|ref|YP_001436947.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii ATCC BAA-894]
gi|166215403|sp|A7MKW4.1|DNLJ_CROS8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|156531285|gb|ABU76111.1| hypothetical protein ESA_00834 [Cronobacter sakazakii ATCC BAA-894]
Length = 672
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/665 (39%), Positives = 394/665 (59%), Gaps = 36/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++T+L+ L H Y++ D P + D +YD+L+ EL+ +EE +PEL+T DS TQ VG
Sbjct: 7 KLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELVTPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F + + FNKR+ + LK T + Y ELK DG+AV+L YE
Sbjct: 67 LTEFSQVRHEVPMLSLDNVFDEASFLAFNKRVQDRLKSTDALVYCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+IT N+ I IPL L P LEVR EV + + F K+N+
Sbjct: 127 NGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLRGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P++ + L FF +GVG L G +P SH E L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGELPRSHMERLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ FY ++ R L ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 KAWGLPVSDRIRLVKTPEEVLAFYHQVEADRPTLGFDIDGVVIKVDSLELQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVVFPAQCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F LE + A+ +
Sbjct: 486 DRMGPKSAQNLVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALINASIDD 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW----------LNNP------- 598
L +P +G F + +R +I L +VGI+W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFEEESNRAVIRDLTEEVGIHWPAPQVVKAEEIDSPFAGKTVV 605
Query: 599 -----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G KV +SK T+ L+ G+ G KL KA +L I+++DE
Sbjct: 606 LTGTLSQMSRDDAKARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAE 665
Query: 642 FVKIV 646
++++
Sbjct: 666 MLRLL 670
>gi|415840370|ref|ZP_11521836.1| DNA ligase, NAD-dependent [Escherichia coli RN587/1]
gi|417281454|ref|ZP_12068754.1| DNA ligase (NAD+) [Escherichia coli 3003]
gi|425278771|ref|ZP_18670012.1| DNA ligase, NAD-dependent [Escherichia coli ARS4.2123]
gi|323188282|gb|EFZ73575.1| DNA ligase, NAD-dependent [Escherichia coli RN587/1]
gi|386245783|gb|EII87513.1| DNA ligase (NAD+) [Escherichia coli 3003]
gi|408201259|gb|EKI26420.1| DNA ligase, NAD-dependent [Escherichia coli ARS4.2123]
Length = 671
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 266/661 (40%), Positives = 399/661 (60%), Gaps = 35/661 (5%)
Query: 20 ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGEN 79
EL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 10 ELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAPLAA 69
Query: 80 SKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGY 139
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE G
Sbjct: 70 FSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYENGV 129
Query: 140 LKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRY 199
L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 130 LVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINEDAR 189
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKI 259
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L ++
Sbjct: 190 RTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLMQFKAW 249
Query: 260 GLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRF 319
GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RAPR+
Sbjct: 250 GLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRW 309
Query: 320 ALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNI 379
A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R +
Sbjct: 310 AVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGL 369
Query: 380 QIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGS 439
+IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC+G
Sbjct: 370 RIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARCTGG 429
Query: 440 WIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRV 499
I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L+R+
Sbjct: 430 LI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERM 488
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+L
Sbjct: 489 GPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQK 548
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP----------- 598
+P +G F + +R +IS+L G++W +++P
Sbjct: 549 VPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGS 608
Query: 599 -------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE +++
Sbjct: 609 LSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRL 668
Query: 646 V 646
+
Sbjct: 669 L 669
>gi|415815289|ref|ZP_11506809.1| DNA ligase, NAD-dependent [Escherichia coli LT-68]
gi|323170330|gb|EFZ55983.1| DNA ligase, NAD-dependent [Escherichia coli LT-68]
Length = 671
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 402/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K G+ + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ +++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNSLEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|153948204|ref|YP_001400300.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis IP
31758]
gi|170023674|ref|YP_001720179.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis YPIII]
gi|190359300|sp|A7FGC2.1|DNLJ_YERP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|254781915|sp|B1JFZ0.1|DNLJ_YERPY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|152959699|gb|ABS47160.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis IP 31758]
gi|169750208|gb|ACA67726.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis YPIII]
Length = 670
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 261/664 (39%), Positives = 403/664 (60%), Gaps = 36/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P I D +YD+++ +L+ +E ++PEL+T DS TQ VG
Sbjct: 7 QINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SLDN F +E + F+KR+ + LK + + + ELK DG+AV+L YE
Sbjct: 67 LDAFEQVEHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAEPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT N+ I IPL L+ P +EVR EV + + F +LN+
Sbjct: 127 NGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVFMPQAGFEQLNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SH + L +
Sbjct: 187 EARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGELPRSHIQCLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +G +++I FY++I R L ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 KAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLVLQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T+++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIP++ ++ RP+D+K P+ CP+C S I +E +ARC
Sbjct: 367 LGLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITFPSQCPVCGSDIERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SR+A+++ G+G K+IE+LV V DL+++ L L
Sbjct: 427 TGGLF-CAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFQLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F+ L+ + A E
Sbjct: 486 DRMGPKSAQNLIAALEKAKQTTFARFLYALGIREVGEATAANLAAHFRTLDNLRAADIET 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L ++P +G K + F+++ ++ +I +L V + W +++P
Sbjct: 546 LKSVPDVGEVVAKHVMNFLSEEHNQKVIEELEKV-VSWPEPQQIVVEEIDSPFAGKTVVL 604
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L IK++DE
Sbjct: 605 TGSLTILSRDEAKDRLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEM 664
Query: 643 VKIV 646
++++
Sbjct: 665 IRLL 668
>gi|260581847|ref|ZP_05849643.1| DNA ligase, NAD-dependent [Haemophilus influenzae NT127]
gi|260095040|gb|EEW78932.1| DNA ligase, NAD-dependent [Haemophilus influenzae NT127]
Length = 679
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 275/666 (41%), Positives = 398/666 (59%), Gaps = 34/666 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++ L+K L ++ Y++ DNP + D++YD+L +LK +E ++PE LT DS TQ
Sbjct: 10 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQ 69
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGI 129
VG + H M+SLDN FSD + F KRI + L L K + + E K DG+
Sbjct: 70 RVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLPKPLTFCCEPKLDGL 129
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G L QA+TRGDG GE+IT NI I +PL L PP LEVR EV +
Sbjct: 130 AVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHA 189
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LNKY K F NPRNAAAG LRQL+P I + L A+G+G G+++P++H
Sbjct: 190 GFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDLPTTH 249
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
L W + IG+ + E + +G +++++FY+ I KR +L Y+IDG V KIN ++ Q +
Sbjct: 250 YACLQWLKSIGIPVNPEIRLCNGADEVLDFYRDIQNKRSSLGYDIDGTVLKINDIALQNE 309
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF S+APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 310 LGFISKAPRWAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 369
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R NI IGDTVV+ R+G+VIP+I + RP+++K P CP+C+S+II IE
Sbjct: 370 NGDEIERLNIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIE 429
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++
Sbjct: 430 GEAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLD 488
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L RL+R+ K A N L +++K+K TT +RFI+ALGIR VGE TA LAN+FK L+ +
Sbjct: 489 LTTLTRLERMGVKSAENALNSLEKAKSTTLARFIFALGIREVGEATALNLANHFKTLDAL 548
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
A +QL +P +G F + + ++ L G++W
Sbjct: 549 KAADLDQLQQVPDVGEVVANRIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKD 608
Query: 595 ----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L T+ G KV +S T++++ G G KL KA +LNI +L
Sbjct: 609 KTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSNKTDFVIAGDAAGSKLAKAQELNIAVL 668
Query: 638 DEKNFV 643
E+ F+
Sbjct: 669 TEEEFL 674
>gi|319793880|ref|YP_004155520.1| DNA ligase, NAD-dependent [Variovorax paradoxus EPS]
gi|315596343|gb|ADU37409.1| DNA ligase, NAD-dependent [Variovorax paradoxus EPS]
Length = 694
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 270/687 (39%), Positives = 416/687 (60%), Gaps = 61/687 (8%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L ++LH+H YY+ D P + D +YD+L L+ +E ++PEL T DS TQ VG +
Sbjct: 14 LSEQLHKHAHLYYVLDAPELPDAEYDKLFQRLQALETEFPELRTPDSPTQRVGGKVLDGF 73
Query: 81 KYVHHTFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAVNLRY 135
V H M+S+ + + F+ R+ EL L ++ + Y+ ELKFDG+A+NLRY
Sbjct: 74 TKVRHKVPMLSIRTETDITPGGASAFDARVRKELGLAEDGPQVSYVCELKFDGLAMNLRY 133
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
E G L QA+TRGDG +GE++T NI + +IPL L+ K PP ++EVR EV + + DF LN
Sbjct: 134 EDGVLVQAATRGDGEVGEDVTQNIRTVREIPLRLSGKAPP-VVEVRGEVYMKRADFDALN 192
Query: 196 KYRYH---LGLKK---FTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELR-----GMN 244
+ + G K F NPRNAAAG +RQL+P I + L FFA+G+GE+ G +
Sbjct: 193 ERQREKIAAGQKNEKIFVNPRNAAAGAVRQLDPAIAAARPLSFFAYGLGEVTPAAEGGPD 252
Query: 245 MPSSHSELLNWYQKI---GLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKI 301
P+ +W Q+ G + + + +G +LI F++ I +R LPY+IDGVVYK+
Sbjct: 253 CPTQ----FDWLQQFHAWGFPVATQTARATGAIELIAFHENIGRQRDALPYDIDGVVYKV 308
Query: 302 NCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGI 361
+ + Q++LGF SR PR+A+A+K+ ++E LT + I IQ+GRTG +TPVA L PV + G+
Sbjct: 309 DSIELQRQLGFVSREPRWAVAHKYPAQEQLTDVLGIEIQVGRTGKLTPVAKLAPVFVGGV 368
Query: 362 TITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILS--LRPNDSK--IFKIPNI 417
T+T ATLHNE E RK++++GDTV+V R+G+VIP++ + +P + +F +P+
Sbjct: 369 TVTNATLHNEDEARRKDVRVGDTVIVRRAGDVIPEVVGVVPESLAKPEGERGPVFTMPHK 428
Query: 418 CPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNAN 477
CP+C S+ + E + RC+G C AQRK + HF++R+A+++ GLG +++E+LV+AN
Sbjct: 429 CPVCGSEAVREEEEVDYRCTGGLF-CAAQRKEAILHFAARRAVDVDGLGDRLVEQLVDAN 487
Query: 478 IVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAK 537
++ T DLYK+ F L LDR++ K A N++ A++ SK TT RF++ LGIRHVGE+TAK
Sbjct: 488 LIRTLPDLYKLGFTTLAGLDRMAEKSAKNLVDALEASKKTTLPRFLFGLGIRHVGESTAK 547
Query: 538 ELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-LN 596
+LA +F L+ + ATE+QLL + +G ++ F +QP +R ++ QLR G+ W
Sbjct: 548 DLAKHFGKLDAIMDATEQQLLEVNDVGPVVAQSLRTFFDQPHNREVVEQLRACGLTWEEG 607
Query: 597 NPNTK-------------------------------GGKVVNFISKNTNYLVKGQKPGKK 625
P + G KV +SK T+YLV G++ G K
Sbjct: 608 EPAARAPKPLAGLTFVITGTLPTLGRDEAKDKLEAAGAKVAGSVSKKTHYLVAGEEAGSK 667
Query: 626 LEKAIKLNIKILDEKNFVKIVKGFSTE 652
L+KA ++ + ++DE ++I++ TE
Sbjct: 668 LDKAREIGVAVIDEARMLEILENGITE 694
>gi|381403759|ref|ZP_09928443.1| NAD-dependent DNA ligase LigA [Pantoea sp. Sc1]
gi|380736958|gb|EIB98021.1| NAD-dependent DNA ligase LigA [Pantoea sp. Sc1]
Length = 672
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 263/664 (39%), Positives = 395/664 (59%), Gaps = 36/664 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+TEL+ L H Y++ D P + D +YD+L+ EL+++E +P+L+T DS TQ VG
Sbjct: 8 ITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRQLEADHPDLITPDSPTQRVGAAPL 67
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
+ V H M+SLDN F + + FNKR+ + LK ++ I Y ELK DG+AV+L YE
Sbjct: 68 TVFEQVRHEVPMLSLDNAFDEATFMAFNKRVRDRLKSSEEITYCCELKLDGLAVSLMYEN 127
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L QA+TRGDG GENIT N+ I IPL L P LEVR EV + ++ F KLN+
Sbjct: 128 GLLVQAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRGEVFMTQRGFEKLNEE 187
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
K F NPRNAAAG LRQL+P+I + L FF +G G L G MP SH L ++
Sbjct: 188 ARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEMPHSHMARLQQFK 247
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
GL + ++ + + FY + +R +L ++IDGVV K++ + Q++LGF +RAP
Sbjct: 248 AWGLPVSDRIKLVHNAEEALAFYHDVEQQRPSLGFDIDGVVIKVDSQAQQEQLGFVARAP 307
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+A+KF ++E LT ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 308 RWAIAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIARL 367
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
++IGD VV+ R+G+VIP++ + + + RP +++ P CP+C S++ +E + RC+
Sbjct: 368 GLRIGDRVVIRRAGDVIPQVVNVVTAERPEETREVVFPAHCPVCGSEVERVEGESVTRCT 427
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++ L LD
Sbjct: 428 GGLI-CGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVSTPADLFRLTAGKLTGLD 486
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+ K A N++ A++K+K TT +RF+YALGIR VGE TA LAN+F L+ + A E L
Sbjct: 487 RMGPKSAQNVVDALEKAKSTTLARFLYALGIREVGEATAANLANHFGELQKVMDADLEAL 546
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW---------------------- 594
+ +P +G F+ + +R +I QL D+G++W
Sbjct: 547 IAVPDVGKVVAAHVRNFMEEESNREVIRQLTDDIGVHWPAVVVVKAEEIDSPFAGKTVVL 606
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+N + K G KV +SK T+ L+ G+ G KL KA +L I+++DE
Sbjct: 607 TGSLSQMNRDDAKAQLIALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAEM 666
Query: 643 VKIV 646
++++
Sbjct: 667 IRLL 670
>gi|258544861|ref|ZP_05705095.1| DNA ligase, NAD-dependent [Cardiobacterium hominis ATCC 15826]
gi|258519884|gb|EEV88743.1| DNA ligase, NAD-dependent [Cardiobacterium hominis ATCC 15826]
Length = 668
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 273/660 (41%), Positives = 391/660 (59%), Gaps = 35/660 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ L++E+ H+ AYY+ DNP+I+D +YD LL EL+ +E E + DS +Q VG
Sbjct: 6 RLAALREEIRAHDHAYYVLDNPLIADAEYDALLRELRALEAASGEPVPADSPSQRVGGKA 65
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN FS+E+ F KR+ L + AE KFDG+A++LRYE
Sbjct: 66 DGAFAPVAHAVPMLSLDNVFSEEEFAAFVKRLQERLD-HDELLLSAEPKFDGLAISLRYE 124
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE++T N+ I IPL L PP ++E+R E+ + K F LN
Sbjct: 125 NGVLTRAATRGDGATGEDVTANVRTIRAIPLRLLDATPPAVIEIRGEIYMPKAAFAALNA 184
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P I ++ L F+A+G+G G +P+++S LL Y
Sbjct: 185 AAERDGGKTFANPRNAAAGSLRQLDPAITASRHLSFYAYGLGAHDGYALPATYSALLAQY 244
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ G+ +C LS + + + KR +LPYEIDGVVYK + + Q+ GF SRA
Sbjct: 245 RDWGVPVCPLQESLSSAAAAVAYMDALGKKRHDLPYEIDGVVYKADRYADQQAAGFVSRA 304
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF + E T ++AI++Q+GRTG +TPVA L+PV + G+T+T ATLHN E+ R
Sbjct: 305 PRWAIAWKFPAVEKTTVVEAIDVQVGRTGAVTPVARLRPVEVGGVTVTNATLHNADEVAR 364
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K++++GDTV V R+G+VIP+I ++L RP DS+ F +P CP+C S+II E +ARC
Sbjct: 365 KDVRVGDTVFVRRAGDVIPEIVKTVLEARPADSQPFAMPTHCPVCESEIIRPEGEAVARC 424
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG + C AQR L HF+SRKA++I GLG K+IE+LV V + DL+ + + L
Sbjct: 425 SGG-LHCRAQRVQALIHFASRKALDIQGLGDKLIEQLVQDGRVHSPADLFALTLADWAAL 483
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
R++ K A NIL A++ +K TT RFIYALGIR VG +A+ LA +++ L + A+E+
Sbjct: 484 PRMAEKSAQNILAALEAAKATTLPRFIYALGIREVGNVSAELLARHYRELPALLAASEDD 543
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------LNNPNTK------ 601
L I IG + F +R +I+ L+ GI+W ++P
Sbjct: 544 LQAIDGIGPVMAQYIRHFFLDDANRAVIAALQAAGIHWPVVEAPVIAADSPLAGKTVVIT 603
Query: 602 ------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
GGK + +SK T+YL+ G K G KLEKA L + I+DE +
Sbjct: 604 GTLPTMTRDEAAAHIARLGGKTASAVSKKTDYLLAGDKAGSKLEKAQSLGVAIIDEAQLL 663
>gi|296104078|ref|YP_003614224.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295058537|gb|ADF63275.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 671
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 397/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P + D +YD+L+ EL+ +E ++PEL+T DS TQ VG
Sbjct: 7 QITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRDLEAQHPELITPDSPTQRVGAEP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDALTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+ITTN+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + ++ FY+K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSNRVQLCDSPEAVLAFYRKVEEDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIDR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + + S RP+D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVQSERPDDTRAIVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++ +K TTF+RF+YALGIR VGE TA LA YF L+ + KA+ E+
Sbjct: 486 DRMGPKSAQNVVNALEAAKETTFARFLYALGIREVGEATAAGLAAYFGTLDALEKASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I +L + GI W
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGKLLEQGIKWPAPVVVNAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 MRLL 669
>gi|258627076|ref|ZP_05721872.1| DNA ligase [Vibrio mimicus VM603]
gi|258580594|gb|EEW05547.1| DNA ligase [Vibrio mimicus VM603]
Length = 670
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 275/671 (40%), Positives = 398/671 (59%), Gaps = 35/671 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S + R+ EL++ LH H + YY+ D P I D +YD+L+ EL +E PEL+T DS +
Sbjct: 1 MSNVEQRLIELRQTLHEHGVRYYVEDAPTIPDAEYDRLMRELLDLEAANPELITPDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + V H M+SLDN F D ++ F +R+T+ + + + E K DG+A
Sbjct: 61 RVGGRPLDGFESVIHEIPMLSLDNAFDDAELDSFYRRMTDRIPAVQQSHFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYENGVLTRAATRGDGATGENITENVRTIKSIPLRLQGSDFPVRLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ +I + L F+A+ VG + G + +SH
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLDSRITAQRPLAFYAYSVGIIDGGELATSHY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ ++ GL IC E ++ + ++ FY+ I +R +L YEIDGVV K++ + Q++L
Sbjct: 241 QRFLQLKRWGLPICPETKPVTSLIEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTVV+ R+G+VIP+I S +L RP D+K P CP+C S+I IE
Sbjct: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPIDAKPIVFPACCPVCQSEIERIEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+G I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 421 EAVARCTGGLI-CQAQRKEALKHFVSRKAMDVDGLGDKVIEQLVDREMVSTPADLFRLRT 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ A+ K+K TT RF+YALGIR VGE TA LA +F L+ +
Sbjct: 480 GELTILERMGPKSAQNVIDALNKAKQTTLPRFLYALGIREVGEATALNLAQHFLTLDAIA 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+ +QL+ +P +G F Q ++ +I++L ++GI W
Sbjct: 540 QASMDQLIEVPDVGGVVASHLHAFFAQSRNQQVIAELIELGITWPAMAVASSIAADSALA 599
Query: 595 ------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
L+ + K G KV +SKNT+ + G+ G KL KA +L I++
Sbjct: 600 GKVVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLSKAAELGIQV 659
Query: 637 LDEKNFVKIVK 647
LDE + +K
Sbjct: 660 LDEHALIDFLK 670
>gi|392980128|ref|YP_006478716.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392326061|gb|AFM61014.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 671
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 397/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P + D +YD+L+ EL+ +E ++PEL+T DS TQ VG
Sbjct: 7 QITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRDLETQHPELITPDSPTQRVGAEP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDALTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+ITTN+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGALPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + ++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + + S RP+D++ + P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVQSERPDDTRAIEFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++ +K TTF+RF+YALGIR VGE TA LA YF L+ + KA+ E+
Sbjct: 486 DRMGPKSAQNVVNALEAAKETTFARFLYALGIREVGEATAAGLAAYFGTLDALEKASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I +L + GI W
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGKLLEQGIKWPAPVVVNAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|207857840|ref|YP_002244491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|436793534|ref|ZP_20521740.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|437323064|ref|ZP_20739133.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|437343278|ref|ZP_20745735.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|445337070|ref|ZP_21415884.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|254781409|sp|B5R3V4.1|DNLJ_SALEP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|206709643|emb|CAR33993.1| DNA ligase [Salmonella enterica subsp. enterica serovar Enteritidis
str. P125109]
gi|434963433|gb|ELL56538.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|435192214|gb|ELN76758.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|435195166|gb|ELN79571.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|444873713|gb|ELX98000.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
Length = 671
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 263/664 (39%), Positives = 397/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY+ + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQTATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEVDSPFAGKTVVL 605
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|437245387|ref|ZP_20714689.1| NAD-dependent DNA ligase LigA, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|435174997|gb|ELN60429.1| NAD-dependent DNA ligase LigA, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
Length = 667
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 263/664 (39%), Positives = 397/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 3 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 62
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 63 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 122
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 123 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 182
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 183 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 242
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY+ + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 243 KAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 302
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 303 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 362
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 363 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 422
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 423 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 481
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 482 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQTATIDE 541
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 542 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 601
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 602 TGSLSQMSRDDAKARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 661
Query: 643 VKIV 646
++++
Sbjct: 662 IRLL 665
>gi|54308062|ref|YP_129082.1| NAD-dependent DNA ligase LigA [Photobacterium profundum SS9]
gi|81615410|sp|Q6LTU5.1|DNLJ_PHOPR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|46912488|emb|CAG19280.1| putative NAD-dependent DNA ligase [Photobacterium profundum SS9]
Length = 676
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 270/659 (40%), Positives = 397/659 (60%), Gaps = 34/659 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+++L H YY+ DNP I D +YD+++ +L +E ++PEL++ DS +Q VG ++
Sbjct: 17 LREQLAYHGHRYYVEDNPEIPDAEYDRMMQQLLALEAEHPELMSVDSPSQRVGGTPLDSF 76
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
V H M+SLDN F+DE++ F KR+ + L ++ Y E K DG+AV+L YE G L
Sbjct: 77 TQVKHELPMLSLDNAFNDEELNAFEKRLLDRLITAGHVSYCCEPKLDGLAVSLMYENGVL 136
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
QA++RGDG GENITTN+ I IPL L + P LEVR EV + KK F +LN
Sbjct: 137 VQAASRGDGATGENITTNVRTIRSIPLKLQGEGWPVRLEVRGEVFMPKKGFDELNARALK 196
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIG 260
G K F NPRNAAAG LRQL+ KI + L F+A+ VG + GM++ S E L + G
Sbjct: 197 KGDKAFANPRNAAAGSLRQLDSKIAATRPLSFYAYSVGVVEGMDLAESQYERLVQLKGWG 256
Query: 261 LSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFA 320
+ +C E L +N +I +Y+ I +R +L YEIDGVV K++ + TQ++LGF +RAPR+A
Sbjct: 257 IPMCPEIRQLKTINDVIAYYQDIGERRQSLAYEIDGVVIKVDDVETQEQLGFVARAPRWA 316
Query: 321 LAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQ 380
+AYKF ++E +T + + Q+GRTG ITPVA L+P+ + G+T++ ATLHN E+ R +
Sbjct: 317 IAYKFPAQEEMTLLNNVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHNADEVARLGVM 376
Query: 381 IGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSW 440
IGDTV++ R+G+VIP+I S + S RP++++ P CP+C S + +E +ARC+G
Sbjct: 377 IGDTVIIRRAGDVIPQIVSVVESRRPDNAQAITFPITCPVCESNVERVEGEAVARCTGGL 436
Query: 441 IECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS 500
C AQRK L+HF SRKA+++ G G+K+IE+LV+ +V T L+K++ + LDR+
Sbjct: 437 F-CQAQRKEALKHFVSRKALDVDGCGEKVIEQLVDREMVTTPAGLFKLSAGIVTVLDRMG 495
Query: 501 NKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNI 560
K A ++ ++ SK TT RFIY+LGIR VGE TA LAN+F+ LE + A++EQLL +
Sbjct: 496 PKSAQKLVDSLANSKETTLPRFIYSLGIREVGEATAANLANHFETLEAITAASKEQLLVV 555
Query: 561 PKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------------- 594
P +G + F + + ++ L VGI+W
Sbjct: 556 PDVGEVVANNLLNFFREAHNMDVVEDLIAVGIHWPAIDKPEEGVELPLDGKVVVLTGSLS 615
Query: 595 -LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
L + K G KV +S T+ LV G+ G KL KA +L+I+I DE+ V +
Sbjct: 616 QLTRSDAKAALQALGAKVTGSVSSKTDLLVAGEAAGSKLTKAQELDIEIWDEQALVDFM 674
>gi|417683040|ref|ZP_12332391.1| DNA ligase, NAD-dependent [Shigella boydii 3594-74]
gi|332092973|gb|EGI98039.1| DNA ligase, NAD-dependent [Shigella boydii 3594-74]
Length = 671
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 267/664 (40%), Positives = 401/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL ++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELCELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K G+ + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGVPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|168243193|ref|ZP_02668125.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194449589|ref|YP_002046491.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|378954229|ref|YP_005211716.1| DNA ligase [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|386592241|ref|YP_006088641.1| DNA ligase [Salmonella enterica subsp. enterica serovar Heidelberg
str. B182]
gi|419729283|ref|ZP_14256242.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|419732931|ref|ZP_14259834.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|419737110|ref|ZP_14263933.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|419743079|ref|ZP_14269746.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|419747801|ref|ZP_14274303.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|421357364|ref|ZP_15807675.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|421361285|ref|ZP_15811549.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|421369276|ref|ZP_15819455.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|421371248|ref|ZP_15821407.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|421375641|ref|ZP_15825753.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|421386399|ref|ZP_15836412.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|421388154|ref|ZP_15838149.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|421393211|ref|ZP_15843157.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|421404451|ref|ZP_15854293.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|421413544|ref|ZP_15863297.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|421415385|ref|ZP_15865111.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|421423511|ref|ZP_15873169.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|421426969|ref|ZP_15876595.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|421431482|ref|ZP_15881066.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|421433898|ref|ZP_15883451.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|421439516|ref|ZP_15889006.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|421445192|ref|ZP_15894620.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|421570593|ref|ZP_16016280.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421573283|ref|ZP_16018922.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421581049|ref|ZP_16026596.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|421584276|ref|ZP_16029785.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|436642273|ref|ZP_20516426.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|436810912|ref|ZP_20529929.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|436817242|ref|ZP_20534324.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|436830801|ref|ZP_20535543.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|436852024|ref|ZP_20542442.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|436860250|ref|ZP_20547864.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|436867231|ref|ZP_20552571.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|436872422|ref|ZP_20555444.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|436879899|ref|ZP_20559733.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|436889282|ref|ZP_20565203.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|436897130|ref|ZP_20569777.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|436901043|ref|ZP_20571967.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|436909501|ref|ZP_20576225.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|436917251|ref|ZP_20580785.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|436929275|ref|ZP_20588401.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|436933781|ref|ZP_20589936.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|436945011|ref|ZP_20597380.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|436953707|ref|ZP_20601905.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|436960663|ref|ZP_20604300.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|436971992|ref|ZP_20610127.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|436976048|ref|ZP_20611700.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|436991034|ref|ZP_20617213.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|437004056|ref|ZP_20621785.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|437016560|ref|ZP_20625976.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|437025133|ref|ZP_20629645.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|437045260|ref|ZP_20637695.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|437048110|ref|ZP_20639291.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|437060767|ref|ZP_20646594.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|437066309|ref|ZP_20649387.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|437076808|ref|ZP_20655056.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|437079769|ref|ZP_20656755.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|437087717|ref|ZP_20661255.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|437111554|ref|ZP_20668196.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|437119696|ref|ZP_20670975.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|437128457|ref|ZP_20675201.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|437135430|ref|ZP_20679300.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|437146520|ref|ZP_20686270.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|437149885|ref|ZP_20688395.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|437161254|ref|ZP_20695304.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|437164843|ref|ZP_20697266.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|437173620|ref|ZP_20701827.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|437182778|ref|ZP_20707277.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|437261745|ref|ZP_20718614.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|437270475|ref|ZP_20723271.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|437275256|ref|ZP_20725802.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|437285780|ref|ZP_20729840.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|437305994|ref|ZP_20734273.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|437367495|ref|ZP_20748896.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|437412086|ref|ZP_20753258.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|437455171|ref|ZP_20760122.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|437461225|ref|ZP_20762174.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|437479018|ref|ZP_20767892.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|437493894|ref|ZP_20772268.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|437507331|ref|ZP_20776050.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|437545250|ref|ZP_20782999.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|437564752|ref|ZP_20787014.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|437575982|ref|ZP_20790404.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|437588640|ref|ZP_20794028.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|437599564|ref|ZP_20796944.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|437619771|ref|ZP_20803827.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|437651487|ref|ZP_20809885.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|437660556|ref|ZP_20812628.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|437669096|ref|ZP_20815422.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|437691050|ref|ZP_20820583.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|437707336|ref|ZP_20825613.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|437723031|ref|ZP_20829228.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|437765204|ref|ZP_20835067.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|437810946|ref|ZP_20841051.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|437880138|ref|ZP_20848856.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|437972928|ref|ZP_20852883.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|438093941|ref|ZP_20861624.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|438106089|ref|ZP_20866531.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|438111750|ref|ZP_20868551.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|438143225|ref|ZP_20875326.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|445174703|ref|ZP_21397115.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|445180249|ref|ZP_21398134.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|445229633|ref|ZP_21405126.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|445345349|ref|ZP_21418135.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|445360435|ref|ZP_21423512.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|254781411|sp|B4TCF6.1|DNLJ_SALHS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|194407893|gb|ACF68112.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|205337689|gb|EDZ24453.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|357204840|gb|AET52886.1| DNA ligase [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|381297201|gb|EIC38296.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|381301926|gb|EIC42976.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|381306680|gb|EIC47552.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381312402|gb|EIC53203.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|381316181|gb|EIC56934.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|383799285|gb|AFH46367.1| DNA ligase [Salmonella enterica subsp. enterica serovar Heidelberg
str. B182]
gi|395982245|gb|EJH91454.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|395991426|gb|EJI00550.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|395993288|gb|EJI02383.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|396003925|gb|EJI12909.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|396004556|gb|EJI13538.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|396012843|gb|EJI21734.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|396018854|gb|EJI27715.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|396021061|gb|EJI29893.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|396026287|gb|EJI35059.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|396036993|gb|EJI45647.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|396039001|gb|EJI47631.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|396047622|gb|EJI56193.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|396053152|gb|EJI61652.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|396053170|gb|EJI61669.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|396061325|gb|EJI69756.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|396065942|gb|EJI74309.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|396069884|gb|EJI78214.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|402518198|gb|EJW25583.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|402523589|gb|EJW30901.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402528481|gb|EJW35733.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402531339|gb|EJW38551.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|434939416|gb|ELL46233.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|434956019|gb|ELL49798.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|434964734|gb|ELL57718.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|434971691|gb|ELL64194.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|434983543|gb|ELL75339.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|434985124|gb|ELL76813.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|434986040|gb|ELL77704.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|434993511|gb|ELL84930.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|435000341|gb|ELL91489.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|435006203|gb|ELL97104.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|435008308|gb|ELL99134.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|435014257|gb|ELM04834.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|435021624|gb|ELM11992.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|435028925|gb|ELM18985.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|435031699|gb|ELM21654.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|435033258|gb|ELM23162.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|435037662|gb|ELM27464.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|435042009|gb|ELM31741.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|435047596|gb|ELM37172.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|435052474|gb|ELM41965.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|435056182|gb|ELM45580.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|435068744|gb|ELM57754.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|435072704|gb|ELM61610.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|435072798|gb|ELM61703.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|435080488|gb|ELM69169.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|435082542|gb|ELM71154.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|435087268|gb|ELM75776.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|435090047|gb|ELM78451.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|435098205|gb|ELM86448.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|435099011|gb|ELM87229.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|435104177|gb|ELM92238.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|435114336|gb|ELN02142.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|435117909|gb|ELN05604.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|435118446|gb|ELN06111.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|435128392|gb|ELN15731.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|435129092|gb|ELN16412.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|435135744|gb|ELN22847.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|435138083|gb|ELN25111.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|435145941|gb|ELN32749.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|435147069|gb|ELN33848.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|435154629|gb|ELN41202.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|435158546|gb|ELN44940.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|435162679|gb|ELN48847.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|435164317|gb|ELN50414.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|435171206|gb|ELN56849.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|435175179|gb|ELN60607.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|435185004|gb|ELN69906.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|435187180|gb|ELN71967.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|435203434|gb|ELN87182.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|435207552|gb|ELN91007.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|435207764|gb|ELN91200.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|435220122|gb|ELO02431.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|435220283|gb|ELO02580.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|435227749|gb|ELO09209.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|435233857|gb|ELO14782.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|435233896|gb|ELO14799.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|435236332|gb|ELO17075.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|435244305|gb|ELO24535.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|435257607|gb|ELO36888.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|435258108|gb|ELO37376.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|435263426|gb|ELO42479.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|435267063|gb|ELO45776.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435269123|gb|ELO47676.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|435281059|gb|ELO58738.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|435282838|gb|ELO60446.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|435291090|gb|ELO67967.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|435293954|gb|ELO70608.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|435298344|gb|ELO74574.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|435307998|gb|ELO83020.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|435314818|gb|ELO88187.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|435321148|gb|ELO93584.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|435330986|gb|ELP02227.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|435333710|gb|ELP04480.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|435339338|gb|ELP08309.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-5646]
gi|444858913|gb|ELX83882.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|444864941|gb|ELX89722.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|444872088|gb|ELX96453.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 20037]
gi|444879292|gb|ELY03396.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|444885074|gb|ELY08880.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
Length = 671
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 263/664 (39%), Positives = 397/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY+ + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQTATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|229525582|ref|ZP_04414987.1| DNA ligase [Vibrio cholerae bv. albensis VL426]
gi|229339163|gb|EEO04180.1| DNA ligase [Vibrio cholerae bv. albensis VL426]
Length = 669
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 272/670 (40%), Positives = 401/670 (59%), Gaps = 34/670 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S + ++TEL++ LH H + YY+ D P I D +YD+L+ EL ++E +PEL++ DS +
Sbjct: 1 MSNVEQKLTELRQILHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + V H M+SLDN F D ++ F +R+T+ + ++ + E K DG+A
Sbjct: 61 RVGGRPLDAFESVVHEIPMLSLDNAFDDSELDSFYRRMTDRIPAVQHSAFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL IC E +++ + ++ FY+ I +R +L YEIDGVV K++ + Q++L
Sbjct: 241 QRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTVV+ R+G+VIP+I S +L RP ++K P CP+C S + +E
Sbjct: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARCSG I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 421 EAVARCSGGLI-CQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ A+ K+K TT +F+YALGIR VGE TA LA +F +LE +
Sbjct: 480 GELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATAFNLAQHFLSLEAIQ 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+ EQ + +P +G F Q ++ +I++L + GI W
Sbjct: 540 QASLEQFIEVPDVGVIVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAG 599
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L+ + K G KV +SKNT+ + G+ G KL KA +L I++
Sbjct: 600 KIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVF 659
Query: 638 DEKNFVKIVK 647
DE+ ++ +K
Sbjct: 660 DEQALIEFLK 669
>gi|424033697|ref|ZP_17773110.1| DNA ligase, NAD-dependent [Vibrio cholerae HENC-01]
gi|408874356|gb|EKM13530.1| DNA ligase, NAD-dependent [Vibrio cholerae HENC-01]
Length = 670
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 277/664 (41%), Positives = 397/664 (59%), Gaps = 34/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ ELK+ LH H + YY+ DNP I D +YD+++ EL IE ++PEL+T DS +Q VG
Sbjct: 8 RLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPELVTVDSPSQRVGGQP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F D ++ F+KR + + +Y E K DG+AV+L YE
Sbjct: 68 LSEFSQVTHEVPMLSLDNAFDDAELDGFHKRAQDRVVGHTIKQYCCEPKLDGLAVSLLYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I IPL L K P LEVR EV + K F KLN+
Sbjct: 128 DGVLVQAATRGDGTTGENITENVRTISAIPLKLQGKDWPTRLEVRGEVFMPKAGFDKLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I ++ L F+A+ VG + G + +SH E
Sbjct: 188 IARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVEGATLANSHYERFLQI 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL +C E + + ++ +Y+ I +R L YEIDGVV K++ ++ Q++LGF +RA
Sbjct: 248 KSWGLPMCPETKRVDNLEEVKAYYQDILNRREALAYEIDGVVIKVDDIAIQERLGFVARA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 308 PRWAIAYKFPAQEEITTLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIER 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
+ +GD VV+ R+G+VIP++ S I RP ++ PN CP+C S + IE + RC
Sbjct: 368 LQVMVGDQVVIRRAGDVIPQVVSVIKERRPETAREILFPNACPVCGSHVERIEGEAVTRC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK L+HF SRKA+++ GLG+K+IE+LV+ +V T DL+K++ L L
Sbjct: 428 TGGLV-CQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDREMVETPADLFKLSAGVLTVL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++KSKLTT RF+Y+LGIR VGE TA LA +FKNLE + +ATEEQ
Sbjct: 487 ERMGPKSATNVVNALEKSKLTTLPRFLYSLGIREVGEATAANLAQHFKNLETIEQATEEQ 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNPNTK------------- 601
L+ + IG K F ++ ++ ++ L GI+W + P
Sbjct: 547 LVEVQDIGVVVAKHITTFFSEEKNQAVVQDLLAQGIHWPEIATPQEGVELPLEGKTVVLT 606
Query: 602 ------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +SK T+ L G+ G KL KA +L I+I E++ +
Sbjct: 607 GTLSQLARSEAKEALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQTEQDLL 666
Query: 644 KIVK 647
++K
Sbjct: 667 NLMK 670
>gi|283786048|ref|YP_003365913.1| DNA ligase [Citrobacter rodentium ICC168]
gi|282949502|emb|CBG89116.1| DNA ligase [Citrobacter rodentium ICC168]
Length = 671
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 260/664 (39%), Positives = 401/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P + D +YD+L+ EL+++E ++PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LTSFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDKLTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+IT N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVRAATRGDGTTGEDITANVRTIRAIPLRLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +G+G L G +P +H L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGILEGGELPDTHLGRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LG+ +RA
Sbjct: 247 KAWGLPVSNRVTLCDSPEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQLGYVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTSVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPAETRPVVFPAQCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CAAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F LE + A+ E+
Sbjct: 486 DRMGPKSAQNVVDALEKAKETTFARFLYALGIREVGEATAAGLAAFFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIRQLLAEGVHWPAPVAIKAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|260769097|ref|ZP_05878031.1| DNA ligase [Vibrio furnissii CIP 102972]
gi|260617127|gb|EEX42312.1| DNA ligase [Vibrio furnissii CIP 102972]
Length = 669
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 271/664 (40%), Positives = 400/664 (60%), Gaps = 34/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+TELK LH H I YY+ D+P I D +YD+L+ EL +E ++PEL+T DS +Q VG
Sbjct: 7 RLTELKDTLHYHAIRYYVEDDPTIPDAEYDRLMRELLDLEAQHPELVTPDSPSQRVGGAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F D+++ F++R+ + + K ++ E K DG+AV+L Y
Sbjct: 67 LAGFEQVTHEIPMLSLDNAFDDDELNSFHRRMGDRVLAAKTAKFCCEPKLDGLAVSLLYV 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I IPL L P +EVR EV + K F K+N
Sbjct: 127 DGVLVQAATRGDGTTGENITENVRTIKSIPLRLQGTGWPTRIEVRGEVFMPKAGFEKMNA 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I + L F+A+ VG ++G + SH E
Sbjct: 187 EALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVIQGGTLVDSHYERFLQL 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + E + ++++ +Y+ I +R LPYEIDGVV K++ ++ Q++LGF +RA
Sbjct: 247 KGWGLPMSPETKRVESLDEVKAYYQDIMTRRSELPYEIDGVVIKVDDIALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 307 PRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTVV+ R+G+VIP+I S + LRP ++ P CP+C S + +E +ARC
Sbjct: 367 LGVKIGDTVVIRRAGDVIPQIVSVVNELRPETAREILFPAQCPVCQSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+++ L L
Sbjct: 427 SGGLV-CQAQRKEALKHFVSRKALDVDGLGDKVIEQLVDKEMVSTPADLFRLRAGELTIL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A NI+ A+ +K TT RF+Y+LGIR VGE TA LA++F L+ + +AT EQ
Sbjct: 486 ERMGPKSAQNIVNALNTAKATTLPRFLYSLGIREVGEATAMNLAHHFLTLDAIREATIEQ 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L+ +P +G+ F Q ++ ++ +L +GI+W
Sbjct: 546 LIEVPDVGTIVASHVHAFFTQERNQKVVEELIALGIHWQAIAPKTDDEPQPLAGKVVVLT 605
Query: 595 -----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
L+ + K G KV +SKNT+ L G+ G KL KA +L I+I DE++ +
Sbjct: 606 GTLSQLSRSDAKAALQALGAKVTGSVSKNTDILFAGEAAGSKLAKAQELGIEIRDEQDLI 665
Query: 644 KIVK 647
+++
Sbjct: 666 AMIR 669
>gi|401764659|ref|YP_006579666.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|400176193|gb|AFP71042.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae
ENHKU01]
Length = 671
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 396/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++T+L+ L H Y++ D P + D +YD+L+ EL+++E ++PEL+T DS TQ VG
Sbjct: 7 QLTDLRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQRVGAEP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV+L YE
Sbjct: 67 LGAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDALTWCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+ITTN+ I IPL L P LEVR EV + + F K+N+
Sbjct: 127 NGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLQGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + ++ FY+K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSNRVQLCDSPEAVLAFYQKVEADRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VVV R+G+VIP++ + + S RP+D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVVRRAGDVIPQVVNVVESERPDDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++ +K TTF+RF+YALGIR VGE TA LA YF LE + KA+ ++
Sbjct: 486 DRMGPKSAQNVVNALEAAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEKASIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I +L GI W
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNREVIGKLLAEGIKWPAPVVVNAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 MRLL 669
>gi|284006788|emb|CBA72055.1| DNA ligase [Arsenophonus nasoniae]
Length = 670
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 274/662 (41%), Positives = 394/662 (59%), Gaps = 33/662 (4%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ LK++L H Y++ D P I D +YD+L+ ELKK+E ++PE +T DS TQ VG
Sbjct: 8 LARLKQQLRHHEYLYHVLDTPEIPDAEYDRLMQELKKLEAEHPEWITADSPTQRVGAAPL 67
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
+ V H M+SLDN F +E + F+KR+ + LK + + ELK DG+AV+L YE
Sbjct: 68 TAFEQVRHEIPMLSLDNVFDEESYLAFDKRVHDRLKNNSQLTFCCELKLDGLAVSLLYEQ 127
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L QA+TRGDG GENIT NI I IPL L PE +E+R EV + + F KLN+
Sbjct: 128 GELVQAATRGDGTTGENITANIRTIRAIPLRLTGDNIPERIEIRGEVFMTHRGFEKLNEE 187
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
K F NPRNAAAG LRQL+P+I + L FF +G G L G +P+SH + L ++
Sbjct: 188 ARRNDGKIFANPRNAAAGSLRQLDPRITAKRPLAFFCYGFGLLAGGQLPASHYQCLMQFK 247
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
K GL + + ++ +++ +Y +I R L ++IDGVV K++ L Q++LGF +RAP
Sbjct: 248 KWGLPVSDKIALCQNSQQVLAYYHQIEHARLGLGFDIDGVVIKVDPLQLQEELGFVARAP 307
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A A+KF ++E +T + + Q+GRTG ITPVA L PVL+ G+ ++ ATLHN EI R
Sbjct: 308 RWATAFKFPAQEQITLLHDVEFQVGRTGAITPVARLAPVLVAGVIVSNATLHNADEIERL 367
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
++IGDTVV+ R+G+VIP+I + + RP DS+ + P CP+C S I IE + RC+
Sbjct: 368 GVRIGDTVVIRRAGDVIPQIVNVLTDRRPIDSREIRFPIHCPVCGSAIERIEGEAVIRCT 427
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G I C AQRK L+HF SR+AM+I G+G K+I++LV V TA DLY++N L RL+
Sbjct: 428 GGLI-CAAQRKGALKHFVSRRAMDIDGMGDKIIDQLVAKEYVTTAADLYRLNLDILARLE 486
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+ K A N++ A+ KSK TT +RFIYALGIR VGE TA LA ++ L + A E L
Sbjct: 487 RMGPKSAQNLINALDKSKQTTLARFIYALGIREVGEATASNLAAHYTTLTSLMAADIESL 546
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYWLNNPNTK--------------- 601
+ +G K + F ++ +R +++QL ++GI W P K
Sbjct: 547 KKVQDVGEIVAKHIVNFFHEQHNRDVVNQLVNEIGISWPRMPAKKTDSPFTGKTIVLTGT 606
Query: 602 ----------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
G KV +SK T+ ++ G+ G KL KA +L IKI++E + +
Sbjct: 607 LNRLTRDELKDKLILLGAKVTGSVSKKTDLVIAGEAAGSKLTKANELGIKIINEDELIAL 666
Query: 646 VK 647
++
Sbjct: 667 LE 668
>gi|238912842|ref|ZP_04656679.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
Length = 671
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 265/664 (39%), Positives = 399/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H E L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLERLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGINVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|83647417|ref|YP_435852.1| NAD-dependent DNA ligase [Hahella chejuensis KCTC 2396]
gi|123767368|sp|Q2SD47.1|DNLJ_HAHCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|83635460|gb|ABC31427.1| DNA ligase, NAD-dependent [Hahella chejuensis KCTC 2396]
Length = 683
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 266/661 (40%), Positives = 395/661 (59%), Gaps = 36/661 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L++ ++ HN YY D+P I D +YD+L+ L++IE ++P+ +T DS TQ VG E
Sbjct: 15 LRETINDHNYRYYTLDDPSIPDAEYDRLMRRLREIEAEFPQTITPDSPTQRVGAAPAEGF 74
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN--IEYIAELKFDGIAVNLRYEYG 138
+ V H M+SLDN F ++D++ F++R+ LK ++ I+Y E K DGIA++L Y G
Sbjct: 75 ETVSHRLPMLSLDNAFEEQDLLDFDRRVRERLKEAEDARIDYCCEPKLDGIAISLLYRDG 134
Query: 139 YLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYR 198
YL + TRGDG+ GE+IT N+ + IPL L + P LEVR E+ + K F +NK
Sbjct: 135 YLVRGVTRGDGSAGEDITANVKTVKNIPLKLRGEGYPAELEVRGEIYLPKAAFDAINKDA 194
Query: 199 YHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQK 258
G K F NPRNAAAG LRQL+P+I + L + VG G +P + ++L Q+
Sbjct: 195 AAKGEKTFVNPRNAAAGSLRQLDPRITAKRALEMCCYSVGYFEG-ELPGTQHDILTQLQQ 253
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL I + + SG + +++Y+ I R LPYEIDGVV+K+N + Q++LGF SRAPR
Sbjct: 254 WGLKINSQMKLASGAQECLDYYRHIMSVRDQLPYEIDGVVFKVNRIDLQQELGFVSRAPR 313
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+A+KF + E +T++ A++ Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R +
Sbjct: 314 WAIAHKFPAHEEMTELLAVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNMDEIRRLD 373
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
+ IGDTV++ R+G+VIP++ S + RP ++ P CP+C S ++ +E +ARCSG
Sbjct: 374 VHIGDTVIIRRAGDVIPQVVSVVQDRRPENAVPVDRPEHCPVCGSDVLQLEGEAVARCSG 433
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
+ C AQRK ++HF+SRKAM+I GLG +++E LV ++ + LY + ++ L+R
Sbjct: 434 G-LYCSAQRKEAIKHFASRKAMDIDGLGDRLVELLVEKELIDSPASLYSLKAPDVAGLER 492
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N++ AI+ SK TTF+RFIYALGIR VGE TAK LA +F L+ + +ATEE L+
Sbjct: 493 MGEKSAQNLINAIEASKQTTFARFIYALGIREVGEATAKVLAQHFPTLDLLKQATEEDLV 552
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------ 594
P IG + F Q + I L + G+ W
Sbjct: 553 EAPDIGPISAGHIRSFFQQEHNLETIDALLNQGVSWPEVVVRSTETLPLSGQTAVVTGVL 612
Query: 595 --LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
+ K G KV +S T ++V G+K G KL KA L +K+LDE F +++
Sbjct: 613 ADYSRDEAKDLLTRLGAKVSGSVSAKTGFVVAGEKAGSKLTKAQDLGVKVLDEDAFKQLL 672
Query: 647 K 647
+
Sbjct: 673 E 673
>gi|51597030|ref|YP_071221.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis IP
32953]
gi|186896113|ref|YP_001873225.1| NAD-dependent DNA ligase LigA [Yersinia pseudotuberculosis PB1/+]
gi|81638946|sp|Q668M6.1|DNLJ_YERPS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|254781913|sp|B2K917.1|DNLJ_YERPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|51590312|emb|CAH21949.1| DNA ligase [Yersinia pseudotuberculosis IP 32953]
gi|186699139|gb|ACC89768.1| DNA ligase, NAD-dependent [Yersinia pseudotuberculosis PB1/+]
Length = 670
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 261/664 (39%), Positives = 403/664 (60%), Gaps = 36/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P I D +YD+++ +L+ +E ++PEL+T DS TQ VG
Sbjct: 7 QINQLRTSLRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SLDN F +E + F+KR+ + LK + + + ELK DG+AV+L YE
Sbjct: 67 LDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAEPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT N+ I IPL L+ P +EVR EV + + F +LN+
Sbjct: 127 NGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVFMPQAGFEQLNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SH + L +
Sbjct: 187 EARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGELPRSHIQCLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +G +++I FY++I R L ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 KAWGLPVSERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLVLQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T+++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIP++ ++ RP+D+K P+ CP+C S I +E +ARC
Sbjct: 367 LGLRIGDTVIVRRAGDVIPQVVGVVMEQRPDDTKEITFPSQCPVCGSDIERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SR+A+++ G+G K+IE+LV V DL+++ L L
Sbjct: 427 TGGLF-CAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFQLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F+ L+ + A E
Sbjct: 486 DRMGPKSAQNLIAALEKAKQTTFARFLYALGIREVGEATAANLAAHFRTLDNLRAADIET 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L ++P +G K + F+++ ++ +I +L V + W +++P
Sbjct: 546 LKSVPDVGEVVAKHVMNFLSEEHNQKVIEELEKV-VSWPEPQQIVVEEIDSPFAGKTVVL 604
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L IK++DE
Sbjct: 605 TGSLTILSRDEAKDRLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEM 664
Query: 643 VKIV 646
++++
Sbjct: 665 IRLL 668
>gi|145630192|ref|ZP_01785974.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
gi|144984473|gb|EDJ91896.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae R3021]
Length = 670
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 274/666 (41%), Positives = 398/666 (59%), Gaps = 34/666 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++ L+K L ++ Y++ DNP + D++YD+L +LK +E ++PE LT DS TQ
Sbjct: 1 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGI 129
VG + H M+SLDN FSD + F KRI + L L K + + E K DG+
Sbjct: 61 RVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLPKPLTFCCEPKLDGL 120
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G L QA+TRGDG GE+IT NI I +PL L PP LEVR EV +
Sbjct: 121 AVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHA 180
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LNKY K F NPRNAAAG LRQL+P I + L A+G+G G+++P++H
Sbjct: 181 GFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDLPTTH 240
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
+ L W + IG+ + E + +G ++++ FY+ I KR +L Y+IDG V KIN ++ Q +
Sbjct: 241 YDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIALQNE 300
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF S+APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 301 LGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 360
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R NI IGDTVV+ R+G+VIP+I + RP+++K P CP+C+S+II IE
Sbjct: 361 NGDEIERLNIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIE 420
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++
Sbjct: 421 GEAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLD 479
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L RL+R+ K A N L +++ +K TT +RFI+ALGIR VGE TA LAN+FK L+ +
Sbjct: 480 LTTLTRLERMGAKSAENALNSLENAKSTTLARFIFALGIREVGEATALNLANHFKTLDTL 539
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
A E+L +P +G F + + ++ L + G++W
Sbjct: 540 KDANLEELQQVPDVGEVVANRIFIFWREAHNVAVVEDLIEQGVHWETVEVKEASENLFKD 599
Query: 595 ----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L T+ G KV +S T++++ G G KL KA +LNI +L
Sbjct: 600 KTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVL 659
Query: 638 DEKNFV 643
E+ F+
Sbjct: 660 TEEEFL 665
>gi|427402204|ref|ZP_18893276.1| DNA ligase, NAD-dependent [Massilia timonae CCUG 45783]
gi|425718977|gb|EKU81918.1| DNA ligase, NAD-dependent [Massilia timonae CCUG 45783]
Length = 788
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 256/594 (43%), Positives = 391/594 (65%), Gaps = 20/594 (3%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ L EL+R + Y++ D P I D +YD+L EL +E +P+ + DS T+ VG
Sbjct: 16 RMRWLVAELNRASYNYHVLDAPTIPDAEYDKLYHELLALETSHPDAVDPDSPTRRVGDAP 75
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SL+NGF+D+D+ F+++ L++ + + Y AELKFDG+A++LRYE
Sbjct: 76 IPEFGQVTHAVPMLSLNNGFNDDDIDNFDRKAREGLEV-RQVVYNAELKFDGLAISLRYE 134
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE++T NI + IP+ L+ P +LEVR EVL++K+DF LN+
Sbjct: 135 DGRLVQAATRGDGYTGEDVTANIRTVRVIPMRLHGGDVPAVLEVRGEVLMFKRDFEALNE 194
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ G K+F NPRNAAAG LRQL+ +I + L FFA+GVG++ G ++P +HS LL+W+
Sbjct: 195 RQRASGQKEFANPRNAAAGSLRQLDARITNERRLRFFAYGVGQVEGADLPDTHSGLLDWF 254
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ +GL + E V++G + L++FY+ + +R +LPYEIDGVVYK++ + Q+ LGF SRA
Sbjct: 255 EALGLPVAKERKVVAGRDGLLDFYRDVGERRKSLPYEIDGVVYKVDRIEDQRALGFVSRA 314
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PRFALA+KF ++EALT ++AI +Q+GRTG ITPVA L PV + G+T+T ATLHNE E+ R
Sbjct: 315 PRFALAHKFPAEEALTTVQAIEVQVGRTGAITPVARLVPVSVGGVTVTNATLHNEDEVRR 374
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPN-DSKIFKIPNICPICNSKIIYIESNLIAR 435
K++++GDTV+V R+G+VIP++ + +L RP+ + ++++P CP+C S ++ +AR
Sbjct: 375 KDVRVGDTVIVRRAGDVIPEVLAVVLERRPSPEPAVYELPKQCPVCGSHVVREADEAVAR 434
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
CSG + C AQRK ++HF+ R+ M+I GLG + I+ LV AN+V DLYK+ +LL+
Sbjct: 435 CSGG-LTCAAQRKEAIRHFAGRRMMDIEGLGDRYIDSLVEANLVKGVADLYKLTLDDLLK 493
Query: 496 LDR-----------------VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKE 538
+ R V+ K A+N+L AI S+ R ++ALGIRHVGE+TAK
Sbjct: 494 MKRLADERDGTTPETVKQGKVATKWADNLLAAIAASRQPPLERLLFALGIRHVGESTAKT 553
Query: 539 LANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI 592
LA++ +L + +A L +P IG T ++ +F + +++ ++ L D G+
Sbjct: 554 LADWLGSLALVRRAPAALLRVLPDIGGTVAESIAEFFAEEKNQIALNALLDAGV 607
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
GGKV +SK T+Y+V G + G KL KA +L + ILDE
Sbjct: 741 GGKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVTILDE 778
>gi|168261543|ref|ZP_02683516.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|417519648|ref|ZP_12181742.1| DNA ligase [Salmonella enterica subsp. enterica serovar Uganda str.
R8-3404]
gi|205349337|gb|EDZ35968.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|353646104|gb|EHC89621.1| DNA ligase [Salmonella enterica subsp. enterica serovar Uganda str.
R8-3404]
Length = 671
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/664 (39%), Positives = 399/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY+ + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|37525354|ref|NP_928698.1| NAD-dependent DNA ligase LigA [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|81416713|sp|Q7MBH2.1|DNLJ_PHOLL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|36784781|emb|CAE13691.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 672
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 269/665 (40%), Positives = 404/665 (60%), Gaps = 36/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P I D +YD+L+ EL+ +EE+YPEL+T DS TQ +G
Sbjct: 7 QIEKLRTTLRHHEYLYHVMDAPEIPDAEYDRLMQELQDLEEQYPELITSDSPTQRIGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F +E + F+KR+ + LK T+++ ELK DG+AV+L YE
Sbjct: 67 LAAFEQVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKETQDLVVCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT+NI I IPL L + P +E+R EV + +K F KLN+
Sbjct: 127 NGELVRAATRGDGTTGENITSNIRTIGAIPLRLFGENIPARIEIRGEVFMPQKGFEKLNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SH E L +
Sbjct: 187 EARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLAFFCYGVGILEGGELPASHYERLIQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + + V + ++I+FY I +R L ++IDGVV KIN L Q+ LGF +RA
Sbjct: 247 KKWGLPVSDKVKVCTDSQQVIDFYHDIVNQRSALGFDIDGVVVKINSLELQEILGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQMTIVRDVEFQVGRTGAITPVARLEPVQVSGVIVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV++ R+G+VIP++ + RP DS + P CP+C + I IE +ARC
Sbjct: 367 LGLRIGDTVIIRRAGDVIPQVVGVLEERRPQDSNVVVFPEHCPVCGADIERIEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK L+HF SR+AM++ G+G+K+I++LV+ V T DL+++ L L
Sbjct: 427 TGGLV-CGAQRKEALRHFVSRRAMDVDGMGEKIIDQLVDKEYVKTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F L+ + A EE
Sbjct: 486 DRMGPKSAQNVVDALEKAKKTTFARFLYALGIREVGEATAANLAAHFGELDKLRSADEEA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHR----------------LLISQLRDV---------- 590
L + +G K + F +P ++ +++++ +
Sbjct: 546 LKEVQDVGEVVAKHVVNFFIEPHNQTVIDDLIDDIGINWEPVVVTRAEKIDSPFSGKTVV 605
Query: 591 ---GIYWLNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
++ L+ K G KV +SK T+ ++ G+ G KL KA +LNI ++DE+
Sbjct: 606 LTGSLHQLSRDEAKAKLVALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELNIPVIDEEE 665
Query: 642 FVKIV 646
++++
Sbjct: 666 MIRLL 670
>gi|299529801|ref|ZP_07043234.1| DNA ligase, NAD-dependent [Comamonas testosteroni S44]
gi|298722215|gb|EFI63139.1| DNA ligase, NAD-dependent [Comamonas testosteroni S44]
Length = 708
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 267/679 (39%), Positives = 411/679 (60%), Gaps = 47/679 (6%)
Query: 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG 73
++ +V L+ +LH+ YY+ D P + D +YD++ +L+ +E YP L+T DS TQ V
Sbjct: 29 VTSKVAALRAQLHQWAHEYYVLDTPTVPDGEYDRVYQQLEALEGAYPALVTPDSPTQRV- 87
Query: 74 LVGG--ENSKYVHHTFKMMSLDNGFSDE--DVIIFNKRITNELKLTKN---IEYIAELKF 126
+G + V H M+S+ +E I F++R+ EL L ++ IEY+AE KF
Sbjct: 88 -IGAVLDGLTPVRHAVPMLSIQTETDNEATGAIAFDQRVRKELGLDESAAAIEYVAEPKF 146
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-KYPPELLEVRCEVL 185
DG+A+NLRYE G L QA+TRGDG +GE++T NI I +IPL L+ + P ++EVR EV
Sbjct: 147 DGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRQIPLTLSAGRDVPPVVEVRGEVH 206
Query: 186 IYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL----R 241
+ K D KLN + G K F NPRNAAAG +RQL+ I + L FFA+G+GE+ +
Sbjct: 207 MAKADLDKLNARQQAAGAKTFANPRNAAAGSVRQLDSNIAAQRPLSFFAYGLGEITPPEQ 266
Query: 242 GMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKI 301
G +H +L + G + + S+ G ++L+ F+++I +R NLPYEIDGVVYK+
Sbjct: 267 GGPDFGTHYAMLQTLKSWGFPVAPQVSIALGASELVAFHERIGAERANLPYEIDGVVYKV 326
Query: 302 NCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGI 361
N L+ Q++LGF SR PR+A+A+K+ ++E T ++AI++Q+GRTG +TPVA L PV + G+
Sbjct: 327 NSLALQRQLGFKSREPRWAVAHKYPAQEMPTLMEAIDVQVGRTGKLTPVARLAPVQVGGV 386
Query: 362 TITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPIC 421
+T ATL N +I +K +++GD V+V R+G+VIP++ + RP F++P CPIC
Sbjct: 387 VVTNATLSNLFDIRKKGVRVGDQVIVRRAGDVIPEVVGRVPGERPAYVPNFRMPKTCPIC 446
Query: 422 NSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVT 481
S+++ + RC+G C AQRK + HF+ R+AM+I GLG K++++LV+A +V
Sbjct: 447 GSEVVREKGEANHRCTGGLF-CGAQRKEAILHFAHRRAMDIEGLGDKLVDQLVDAQVVRV 505
Query: 482 AVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELAN 541
DLY++ +L LDR++ K A N+L A++KSK TT RF++ LGIR+VGE+TA++LA
Sbjct: 506 LPDLYRLGLSSLAALDRMAEKSAQNVLAALEKSKSTTLQRFLFGLGIRNVGESTARDLAK 565
Query: 542 YFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-LNNPNT 600
+F L+ + A+ E+LL + +G + F QP +R ++ QLR G++W P
Sbjct: 566 HFGKLDAIMDASVEELLQVKDVGPVVADSIHTFFAQPHNREVVEQLRACGVHWEEGEPAE 625
Query: 601 K-------------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKA 629
K G KV +SK T+Y+V G + G KL KA
Sbjct: 626 KAPQILAGLTVVLTGTLPTLGRDAAKDMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLAKA 685
Query: 630 IKLNIKILDEKNFVKIVKG 648
+L + +LDE + +++G
Sbjct: 686 EELGVPVLDEAGMLALLRG 704
>gi|268593162|ref|ZP_06127383.1| DNA ligase, NAD-dependent [Providencia rettgeri DSM 1131]
gi|291311208|gb|EFE51661.1| DNA ligase, NAD-dependent [Providencia rettgeri DSM 1131]
Length = 671
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 272/664 (40%), Positives = 396/664 (59%), Gaps = 36/664 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ ELKK+L H Y++ D P I D +YD+L+ LK+IE ++PEL+T DS TQ VG
Sbjct: 7 IDELKKQLRHHEYQYHVLDAPEIPDVEYDKLMQRLKEIEAQHPELVTSDSPTQRVGAAPL 66
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
V H M+SLDN F +E + F+KR+ + LK + + + ELK DG+AV+L YE
Sbjct: 67 AAFDTVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKNHQELTFCCELKLDGLAVSLLYEN 126
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L QA+TRGDG +GENIT N+ I IPL L P+ +E+R EV + +K F LN+
Sbjct: 127 GELVQAATRGDGTVGENITANVRTIRAIPLRLRGSNIPDRVEIRGEVFMPQKGFEALNEQ 186
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
K F NPRNAAAG LRQL+P+I + L F+ +GVG + G ++P +H + L ++
Sbjct: 187 ARKTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGGSLPDTHYDRLMQFK 246
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
GL + + G +++FY +I R +L ++IDGVV K+N ++ Q++LGF SRAP
Sbjct: 247 AWGLPVSDYVQLRVGHQAVLDFYHEIEQVRPDLGFDIDGVVIKVNSIAIQEELGFVSRAP 306
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A A+KF ++E +T +K + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 RWATAFKFPAQEQVTLLKDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLHNADEIERL 366
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
+ IGDTV++ R+G+VIP+I S ++ RP DS+ P CP+C S I +E +ARC+
Sbjct: 367 GVHIGDTVIIRRAGDVIPQIVSVVVDKRPTDSREIVFPTHCPVCGSDIERVEGEAVARCT 426
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DLY+++ L LD
Sbjct: 427 GGLI-CGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVKTPADLYQLSAGILTGLD 485
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+ K A N++ A+ KSK TT +RFIYALGIR VGE TA LA ++ LE + A EE L
Sbjct: 486 RMGPKSAQNLVDALNKSKQTTLARFIYALGIREVGEATAANLAAHYTTLEAVMTADEESL 545
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQ-LRDVGIYW----------LNNPNTK----- 601
+ IG K + F +P ++ +I L I+W +++P
Sbjct: 546 KTVQDIGHVVAKHVVNFFREPHNQAVIEDLLTKANIHWPEVKVVNSAEIDSPFAGKTVVL 605
Query: 602 -------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSMSVLTRDEAKDKLVALGAKVSGSVSKKTDLVIAGEAAGSKLAKANELGIRVIDENEL 665
Query: 643 VKIV 646
V+++
Sbjct: 666 VRLL 669
>gi|148826285|ref|YP_001291038.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittEE]
gi|166215778|sp|A5UD04.1|DNLJ_HAEIE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|148716445|gb|ABQ98655.1| DNA ligase [Haemophilus influenzae PittEE]
Length = 670
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 275/666 (41%), Positives = 396/666 (59%), Gaps = 34/666 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++ L+K L ++ Y++ DNP + D++YD+L +LK +E ++PE LT DS TQ
Sbjct: 1 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGI 129
VG + H M+SLDN FSD + F KRI + L L K + + E K DG+
Sbjct: 61 RVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLPKQLTFCCEPKLDGL 120
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G L QA+TRGDG IGE+IT NI I +PL L PP LEVR EV +
Sbjct: 121 AVSILYVNGVLTQAATRGDGTIGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHA 180
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LNKY K F NPRNAAAG LRQL+P I + L A+G+G G+++P++H
Sbjct: 181 GFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDLPTTH 240
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
L W + IG+ + E + +G ++++ FY+ I KR +L Y+IDG V KIN ++ Q +
Sbjct: 241 YARLQWLKSIGIPVNPEIRLCNGADEVLGFYQDIQNKRSSLGYDIDGTVLKINDIALQNE 300
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF S+APR+A AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 301 LGFISKAPRWATAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 360
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R NI IGDTVV+ R+G+VIP+I + RP+++K P CP+C+S+II IE
Sbjct: 361 NGDEIERLNIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIE 420
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++
Sbjct: 421 GEAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLD 479
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L RL+R+ K A N L +++ +K TT +RFI+ALGIR VGE TA LAN+FK L+ +
Sbjct: 480 LTTLTRLERMGTKSAENALNSLENAKSTTLARFIFALGIREVGEATALNLANHFKTLDAL 539
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
A E+L +P +G F + + ++ L G++W
Sbjct: 540 KDANLEELQQVPDVGEVVANRIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKD 599
Query: 595 ----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L T+ G KV +S T++++ G G KL KA +LNI +L
Sbjct: 600 KTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVL 659
Query: 638 DEKNFV 643
E+ F+
Sbjct: 660 TEEEFL 665
>gi|453063694|gb|EMF04672.1| NAD-dependent DNA ligase LigA [Serratia marcescens VGH107]
Length = 673
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 266/666 (39%), Positives = 399/666 (59%), Gaps = 37/666 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P + D +YD+L+ EL+++E +PEL+T DS TQ VG
Sbjct: 7 QINQLRATLRHHEYQYHVLDAPEVPDAEYDRLMRELRELESAHPELITADSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F +E + F KR+ + LK + + + ELK DG+AV+L YE
Sbjct: 67 LAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKSSDPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENITTN+ I IPL L P LEVR EV + + F ++N+
Sbjct: 127 DGELVRAATRGDGTTGENITTNVRTIRAIPLRLTGDNIPRRLEVRGEVFMPQAGFEQMNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SH E L +
Sbjct: 187 EARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHFERLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + +G +++ FY+++ R L ++IDGVV KI+ + Q+ LGF +RA
Sbjct: 247 KAWGLPVSDRAQRRTGSEEVLAFYRQVEQDRAQLGFDIDGVVIKIDDIDLQETLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T ++ + Q+GRTG ITPVA L+PVL+ G+T++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIP++ + RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDTVIVRRAGDVIPQVVGVLEDRRPQDAREVVFPLHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+IE+LV+ V DL++++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRALDVEGMGDKIIEQLVDKEYVKNPADLFRLSAGILTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++KSK TTF+RF+YALGIR VGE TA LA +F +LE +F A E
Sbjct: 486 DRMGPKSAQNLVNALEKSKQTTFARFLYALGIREVGEATAANLAAHFGSLEKLFAADIEA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL--RDVGIYW----------LNNP------ 598
L +P +G K F+++ L++ +I++L ++GI W +++P
Sbjct: 546 LKEVPDVGEVVAKHTRNFLDEALNQQVINELVGAEIGIRWPAPVVVVAEEIDSPFAGKTV 605
Query: 599 ------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 VLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEA 665
Query: 641 NFVKIV 646
++++
Sbjct: 666 EMIRLL 671
>gi|197247622|ref|YP_002147380.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|440761481|ref|ZP_20940555.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|440767044|ref|ZP_20946030.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|440773747|ref|ZP_20952638.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|254781407|sp|B5F0F5.1|DNLJ_SALA4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|197211325|gb|ACH48722.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|436414722|gb|ELP12648.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|436421543|gb|ELP19388.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|436424703|gb|ELP22468.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
Length = 671
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/664 (39%), Positives = 399/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY+ + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|416571291|ref|ZP_11766623.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|363574348|gb|EHL58217.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
Length = 671
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 265/664 (39%), Positives = 398/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+K+E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRKLEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|417792852|ref|ZP_12440163.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii E899]
gi|449307347|ref|YP_007439703.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii SP291]
gi|333953042|gb|EGL71033.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii E899]
gi|449097380|gb|AGE85414.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii SP291]
Length = 672
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/665 (39%), Positives = 393/665 (59%), Gaps = 36/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++T+L+ L H Y++ D P + D +YD+L+ EL+ +EE +PEL+T DS TQ VG
Sbjct: 7 KLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRTLEEAHPELVTPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F + + FNKR+ + LK T + Y ELK DG+AV+L YE
Sbjct: 67 LTEFSQVRHEVPMLSLDNVFDEASFLAFNKRVQDRLKSTDALVYCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+IT N+ I IPL L P LEVR EV + + F K+N+
Sbjct: 127 NGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLRGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P++ + L FF +GVG L G +P SH E L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGELPRSHMERLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ FY ++ R L ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 KAWGLPVSERIRLVKTPEEVLAFYHQVEADRPTLGFDIDGVVIKVDSLELQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP ++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETSPVVFPAQCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F LE + A+ +
Sbjct: 486 DRMGPKSAQNLVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALINASIDD 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW----------LNNP------- 598
L +P +G F + +R +I L +VGI+W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFEEESNRAVIRDLTEEVGIHWPAPQVVKAEEIDSPFAGKTVV 605
Query: 599 -----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G KV +SK T+ L+ G+ G KL KA +L I+++DE
Sbjct: 606 LTGTLSQMSRDDAKARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAE 665
Query: 642 FVKIV 646
++++
Sbjct: 666 MLRLL 670
>gi|204929538|ref|ZP_03220612.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|416506806|ref|ZP_11734948.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|416514176|ref|ZP_11738251.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|416561007|ref|ZP_11761562.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|452123748|ref|YP_007473996.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
gi|204321257|gb|EDZ06457.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|363554349|gb|EHL38585.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|363566597|gb|EHL50612.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
gi|363574536|gb|EHL58404.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|451912752|gb|AGF84558.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
Length = 671
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/664 (39%), Positives = 399/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY+ + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|264678823|ref|YP_003278730.1| DNA ligase, NAD-dependent [Comamonas testosteroni CNB-2]
gi|262209336|gb|ACY33434.1| DNA ligase, NAD-dependent [Comamonas testosteroni CNB-2]
Length = 708
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 267/679 (39%), Positives = 411/679 (60%), Gaps = 47/679 (6%)
Query: 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG 73
++ +V L+ +LH+ YY+ D P + D +YD++ +L+ +E YP L+T DS TQ V
Sbjct: 29 VTSKVAALRAQLHQWAHEYYVLDTPTVPDGEYDRVYQQLEALEGAYPALVTPDSPTQRV- 87
Query: 74 LVGG--ENSKYVHHTFKMMSLDNGFSDE--DVIIFNKRITNELKLTKN---IEYIAELKF 126
+G + V H M+S+ +E I F++R+ EL L ++ IEY+AE KF
Sbjct: 88 -IGAVLDGLTPVRHAVPMLSIQTETDNEATGAIAFDQRVRKELGLDESAAAIEYVAEPKF 146
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-KYPPELLEVRCEVL 185
DG+A+NLRYE G L QA+TRGDG +GE++T NI I +IPL L+ + P ++EVR EV
Sbjct: 147 DGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRQIPLTLSAGRDVPPVVEVRGEVH 206
Query: 186 IYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL----R 241
+ K D KLN + G K F NPRNAAAG +RQL+ I + L FFA+G+GE+ +
Sbjct: 207 MAKADLDKLNARQQAAGAKTFANPRNAAAGSVRQLDSNIAAQRPLSFFAYGLGEITPPQQ 266
Query: 242 GMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKI 301
G +H +L + G + + S+ G ++L+ F+++I +R NLPYEIDGVVYK+
Sbjct: 267 GGPDFGTHYAMLQTLKSWGFPVAPQVSIALGASELVAFHERIGAERANLPYEIDGVVYKV 326
Query: 302 NCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGI 361
N L+ Q++LGF SR PR+A+A+K+ ++E T ++AI++Q+GRTG +TPVA L PV + G+
Sbjct: 327 NSLALQRQLGFKSREPRWAVAHKYPAQEMPTLMEAIDVQVGRTGKLTPVARLAPVQVGGV 386
Query: 362 TITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPIC 421
+T ATL N +I +K +++GD V+V R+G+VIP++ + RP F++P CPIC
Sbjct: 387 VVTNATLSNLFDIRKKGVRVGDQVIVRRAGDVIPEVVGRVPGERPAYVPNFRMPKTCPIC 446
Query: 422 NSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVT 481
S+++ + RC+G C AQRK + HF+ R+AM+I GLG K++++LV+A +V
Sbjct: 447 GSEVVREKGEANHRCTGGLF-CGAQRKEAILHFAHRRAMDIEGLGDKLVDQLVDAQVVRV 505
Query: 482 AVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELAN 541
DLY++ +L LDR++ K A N+L A++KSK TT RF++ LGIR+VGE+TA++LA
Sbjct: 506 LPDLYRLGLSSLAALDRMAEKSAQNVLAALEKSKSTTLQRFLFGLGIRNVGESTARDLAK 565
Query: 542 YFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-LNNPNT 600
+F L+ + A+ E+LL + +G + F QP +R ++ QLR G++W P
Sbjct: 566 HFGKLDAIMDASVEELLQVKDVGPVVADSIHTFFAQPHNREVVEQLRACGVHWEEGEPAE 625
Query: 601 K-------------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKA 629
K G KV +SK T+Y+V G + G KL KA
Sbjct: 626 KAPQILAGLTVVLTGTLPTLGRDAAKDMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLAKA 685
Query: 630 IKLNIKILDEKNFVKIVKG 648
+L + +LDE + +++G
Sbjct: 686 EELGVPVLDEAGMLALLRG 704
>gi|168231967|ref|ZP_02657025.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|194471791|ref|ZP_03077775.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194458155|gb|EDX46994.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|205333574|gb|EDZ20338.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
Length = 671
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/664 (39%), Positives = 399/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY+ + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|62180995|ref|YP_217412.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|375115330|ref|ZP_09760500.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|75481868|sp|Q57LT1.1|DNLJ_SALCH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|62128628|gb|AAX66331.1| DNA ligase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|322715476|gb|EFZ07047.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
Length = 671
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/664 (39%), Positives = 400/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY+ + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA+ LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAEGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|422023254|ref|ZP_16369759.1| NAD-dependent DNA ligase LigA [Providencia sneebia DSM 19967]
gi|414094022|gb|EKT55692.1| NAD-dependent DNA ligase LigA [Providencia sneebia DSM 19967]
Length = 671
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 273/661 (41%), Positives = 401/661 (60%), Gaps = 36/661 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
LK++L H Y++ D P I D +YD+L+ ELK+IE ++PE +T DS TQ VG
Sbjct: 10 LKQQLRHHEYQYHVLDAPEIPDAQYDKLMQELKQIEAEHPEWVTNDSPTQRVGAAPLAAF 69
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
V H M+SLDN F +E + F+KR+ + LK + + ELK DG+AV+L YE G L
Sbjct: 70 DTVRHEIPMLSLDNVFDEESYLAFDKRVGDRLKNREPQTFCCELKLDGLAVSLLYENGEL 129
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
QA+TRGDG +GENIT+N+ I IPL L P +E+R EV + +K F +N+
Sbjct: 130 VQAATRGDGTLGENITSNVRTIRAIPLRLIGDNIPVRIEIRGEVFMPQKGFEAINEEARR 189
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIG 260
G K F NPRNAAAG LRQL+P+I + L F+ +GVG + G +P +H E L ++ G
Sbjct: 190 SGGKIFANPRNAAAGSLRQLDPRITAKRPLMFYCYGVGIIEGGVLPDTHYERLMQFKSWG 249
Query: 261 LSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFA 320
L + + +G +++++FY KI +R NL ++IDGVV KIN ++TQ+ LGF SRAPR+A
Sbjct: 250 LPVSDYVQLCTGSSEVLDFYHKIEEERPNLGFDIDGVVIKINSIATQEDLGFVSRAPRWA 309
Query: 321 LAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQ 380
A+KF ++E +T +K + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R ++
Sbjct: 310 TAFKFPAQEQITVLKDVEFQVGRTGAITPVARLEPVQVAGVMVSNATLHNADEIERLGVR 369
Query: 381 IGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSW 440
IGDTV+V R+G+VIP+I S + S RP DS+ P CP+C+S + IE +ARC+G
Sbjct: 370 IGDTVIVRRAGDVIPQIVSVMESERPEDSREIIFPTHCPVCHSDVERIEGEAVARCTGGL 429
Query: 441 IECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS 500
I C AQRK L+HF SR+AM++ G+G K+I++LV V T DLY+++ L L+R+
Sbjct: 430 I-CGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEREYVRTPADLYQLSAGILTGLERMG 488
Query: 501 NKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNI 560
K A N++ A++KSK TT +RFIYALGIR VGE TA LA+++ L+ + A EE L +
Sbjct: 489 PKSAQNLVDALEKSKSTTLARFIYALGIREVGEATAANLASHYNTLQAVMAADEESLKTV 548
Query: 561 PKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW----------LNNP----------- 598
IG K + F + ++ +I+ L I+W +++P
Sbjct: 549 QDIGHIVAKHVVNFFREEHNQAVINDLIHKANIHWPEAVAINIEEIDSPFAGKTVVLTGS 608
Query: 599 -------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
G KV +SK T+ ++ G+ G KL KA++L I+++DE + +
Sbjct: 609 MNRLTRDEAKDKLTALGAKVAGSVSKKTDMVIAGEAAGSKLAKAVELGIQVIDEDELINL 668
Query: 646 V 646
+
Sbjct: 669 L 669
>gi|229846132|ref|ZP_04466244.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 7P49H1]
gi|229811136|gb|EEP46853.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae 7P49H1]
Length = 670
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 275/666 (41%), Positives = 396/666 (59%), Gaps = 34/666 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++ L+K L ++ Y++ DNP + D++YD+L +LK +E ++PE LT DS TQ
Sbjct: 1 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGI 129
VG + H M+SLDN FSD + F KRI + L L K + + E K DG+
Sbjct: 61 RVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLPKQLTFCCEPKLDGL 120
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G L QA+TRGDG IGE+IT NI I +PL L PP LEVR EV +
Sbjct: 121 AVSILYVNGVLTQAATRGDGTIGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHA 180
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LNKY K F NPRNAAAG LRQL+P I + L A+G+G G+++P++H
Sbjct: 181 GFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDLPTTH 240
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
L W + IG+ + E + +G ++++ FY+ I KR +L Y+IDG V KIN ++ Q +
Sbjct: 241 YARLQWLKSIGIPVNPEIRLCNGADEVLGFYQDIQNKRSSLGYDIDGTVLKINDIALQNE 300
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF S+APR+A AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 301 LGFISKAPRWATAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 360
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R NI IGDTVV+ R+G+VIP+I + RP+++K P CP+C+S+II IE
Sbjct: 361 NGDEIERLNIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIE 420
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++
Sbjct: 421 GEAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLD 479
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L RL+R+ K A N L +++ +K TT +RFI+ALGIR VGE TA LAN+FK L+ +
Sbjct: 480 LTTLTRLERMGTKSAENALNSLENAKSTTLARFIFALGIREVGEATALNLANHFKTLDAL 539
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
A E+L +P +G F + + ++ L G++W
Sbjct: 540 KDANLEELQQVPDVGEVVANRIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKD 599
Query: 595 ----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L T+ G KV +S T++++ G G KL KA +LNI +L
Sbjct: 600 KTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGNAAGSKLAKAQELNITVL 659
Query: 638 DEKNFV 643
E+ F+
Sbjct: 660 TEEEFL 665
>gi|334125019|ref|ZP_08499013.1| NAD-dependent DNA ligase LigA [Enterobacter hormaechei ATCC 49162]
gi|333387589|gb|EGK58783.1| NAD-dependent DNA ligase LigA [Enterobacter hormaechei ATCC 49162]
Length = 671
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 265/664 (39%), Positives = 397/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P + D +YD+L+ EL+++E ++PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQRVGAEP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F +E + FNKR+ + LK N+ + ELK DG+AV++ YE
Sbjct: 67 LGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSVDNLSWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G + +A+TRGDG GE+ITTN+ I IPL L P LEVR EV + + F K+N+
Sbjct: 127 NGVMVRAATRGDGTTGEDITTNVRTIRAIPLKLRGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G ++P +H L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGDLPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + + ++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KEWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + + S RP D++ + P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVESERPADTRAIEFPAHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+ + L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFTLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A NI+ A++ +K TTF+RF+YALGIR VGE TA LA YF L+ + KAT ++
Sbjct: 486 DRMGPKSAQNIVNALEAAKNTTFARFLYALGIREVGEATAAGLAAYFGTLDALEKATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I +L + GI+W
Sbjct: 546 LQKVPDVGIVVATHVYNFFAEESNREVIGKLLEQGIHWPAPVVVNAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 MRLL 669
>gi|194444893|ref|YP_002041687.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|418805386|ref|ZP_13360974.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|418814114|ref|ZP_13369634.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|418818810|ref|ZP_13374274.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|418819318|ref|ZP_13374771.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|418826936|ref|ZP_13382109.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|418829699|ref|ZP_13384668.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|418835026|ref|ZP_13389924.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|418841844|ref|ZP_13396658.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|418844123|ref|ZP_13398916.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|418850423|ref|ZP_13405140.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|418856346|ref|ZP_13410993.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|418860616|ref|ZP_13415192.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|418861647|ref|ZP_13416199.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|418867111|ref|ZP_13421571.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|421883303|ref|ZP_16314538.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|254781412|sp|B4SZU5.1|DNLJ_SALNS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|194403556|gb|ACF63778.1| DNA ligase [Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|379987119|emb|CCF86811.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|392772448|gb|EJA29149.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|392784429|gb|EJA41027.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|392785087|gb|EJA41668.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|392795240|gb|EJA51621.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|392802843|gb|EJA59045.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|392803435|gb|EJA59629.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|392804173|gb|EJA60342.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|392807594|gb|EJA63662.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|392815480|gb|EJA71420.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392819036|gb|EJA74915.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|392820147|gb|EJA76002.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|392826404|gb|EJA82132.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|392837872|gb|EJA93439.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|392839531|gb|EJA95070.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
Length = 671
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/664 (39%), Positives = 399/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY+ + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|407070755|ref|ZP_11101593.1| NAD-dependent DNA ligase LigA [Vibrio cyclitrophicus ZF14]
Length = 670
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 275/669 (41%), Positives = 401/669 (59%), Gaps = 36/669 (5%)
Query: 13 KLSFRVT--ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
K S +VT +L++ LH H + YY+ D+P I D +YD+L+ +L KIEE+ PEL+T DS +Q
Sbjct: 2 KESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEEENPELVTVDSPSQ 61
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG E V H M+SLDN FSDED+ FNKR+++ + E K DG+A
Sbjct: 62 RVGGQPLEGFTQVTHEIPMLSLDNAFSDEDLDAFNKRMSDRAPTANLKTFCCEPKLDGLA 121
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L Y G L QA+TRGDG GENIT N+ I IPL L + PE +EVR EV + K
Sbjct: 122 VSLLYVNGSLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVFMPKAG 181
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F KLN+ G K F NPRNAAAG LRQL+ +I + L F+A+ VG ++G + +SH
Sbjct: 182 FNKLNELALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVQGAELSTSHY 241
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL +C E L+ ++ + +Y+ I +R L YEIDGVV K++ ++ Q+ L
Sbjct: 242 QRFIQLKGWGLPMCPETKQLTSLDDVKAYYQDIMSRRDALAYEIDGVVIKVDDIAAQETL 301
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E +T + + Q+GRTG ITPVA L+P+ + G+T++ ATLHN
Sbjct: 302 GFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHN 361
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R +++GD+V++ R+G+VIP+I + + RP+ + P+ CP+CNS + +E
Sbjct: 362 ADEIARLGVKVGDSVIIRRAGDVIPQIVAVVQDRRPDTATDIVFPDTCPVCNSTVERVEG 421
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++
Sbjct: 422 EAVARCTGGLV-CQAQRKEALKHFVSRKALDVDGLGVKVIEQLVDREMVETPADLFKLSA 480
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
+ LDR+ K A N++ A+ K+K TT +RF+Y+LGIR VGE TA LA +FK L+ +
Sbjct: 481 GVITVLDRMGPKSAQNVVSALNKAKDTTLARFLYSLGIREVGEATAMNLAQHFKTLDLVQ 540
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
AT EQL+ + IG F +Q +R +I QL ++G+ W
Sbjct: 541 TATHEQLVEVSDIGDIVASHITSFFSQEKNRAVIEQLLELGVNWPAIEAVADDQDLPLEG 600
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L K G KV +SK T+ L G+ G KL KA L I+I
Sbjct: 601 KVVVLTGSLSQLGRSEAKAALQALGAKVTGSVSKKTDILFAGEAAGSKLTKAQDLGIEIR 660
Query: 638 DEKNFVKIV 646
E + + ++
Sbjct: 661 TEDDLIALI 669
>gi|167549563|ref|ZP_02343322.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205325268|gb|EDZ13107.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
Length = 671
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/664 (39%), Positives = 399/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY+ + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLETLQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|378578256|ref|ZP_09826931.1| DNA ligase, NAD(+)-dependent [Pantoea stewartii subsp. stewartii
DC283]
gi|377818536|gb|EHU01617.1| DNA ligase, NAD(+)-dependent [Pantoea stewartii subsp. stewartii
DC283]
Length = 672
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/662 (39%), Positives = 396/662 (59%), Gaps = 36/662 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+TEL+ L H Y++ D P + D +YD+L+ EL+ +E ++P+L+T DS TQ VG
Sbjct: 8 ITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRDLEAQHPDLITPDSPTQRVGAAPL 67
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
+ V H M+SLDN F + FNKR+ + LK T ++ Y ELK DG+AV+L YE
Sbjct: 68 MVFEQVRHEVPMLSLDNAFDEASFRAFNKRVQDRLKSTDDLTYCCELKLDGLAVSLLYED 127
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L +A+TRGDG GENITTN+ I IPL L P +EVR EV + + F KLN
Sbjct: 128 GLLTRAATRGDGTTGENITTNVRTIRAIPLRLKGDNIPARVEVRGEVFMTQSGFEKLNAE 187
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
K F NPRNAAAG LRQL+P+I + L FF +G+G L G MP SH L ++
Sbjct: 188 ARRTEGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEMPRSHMARLQQFK 247
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
GL + ++ ++ + FY ++ +R L ++IDGVV K++ Q+KLGF +RAP
Sbjct: 248 AWGLPVSDRIRLVQNADEALAFYHEVESERATLGFDIDGVVIKVDSQELQEKLGFVARAP 307
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+A+KF ++E +T + + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 308 RWAVAFKFPAQEQMTIVCDVEFQVGRTGAITPVARLEPVQVAGVMVSNATLHNADEIERL 367
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
++IGD VV+ R+G+VIP++ + + S RP++++ P+ CP+C S + +E + RC+
Sbjct: 368 GLRIGDKVVIRRAGDVIPQVVNVVTSERPDNAREIVFPSQCPVCGSDVERVEGEAVTRCT 427
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL++++ + L LD
Sbjct: 428 GGLI-CGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVKTPADLFRLSRETLTGLD 486
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+ K A N++ A++K+K TT +RF+YALGIR VGE TA LA++F +L+ + A + L
Sbjct: 487 RMGAKSAQNVVDALEKAKSTTLARFLYALGIREVGEATAANLASHFGDLQKVMDADLDAL 546
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW---------------------- 594
+ + +G+ K F+ + +R +I QL D+GI+W
Sbjct: 547 IAVQDVGTVVAKHVRHFMEEESNREVIRQLVEDIGIHWPQVVAVNPGEIDSPFAGKTVVL 606
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+N + K G KV +SK T+ L+ G+ G KL KA +L I+I+DE
Sbjct: 607 TGSLSQMNRDDAKARLIELGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEIIDEAEM 666
Query: 643 VK 644
++
Sbjct: 667 IR 668
>gi|416530819|ref|ZP_11745233.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|416539015|ref|ZP_11749724.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|416552041|ref|ZP_11756770.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|417468931|ref|ZP_12165403.1| DNA ligase [Salmonella enterica subsp. enterica serovar Montevideo
str. S5-403]
gi|353628886|gb|EHC76822.1| DNA ligase [Salmonella enterica subsp. enterica serovar Montevideo
str. S5-403]
gi|363549821|gb|EHL34152.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|363560773|gb|EHL44904.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|363564949|gb|EHL48987.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
Length = 671
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/664 (39%), Positives = 398/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+K+E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRKLEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FN+R+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNRRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVAVGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|224583040|ref|YP_002636838.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|254781413|sp|C0PZB4.1|DNLJ_SALPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|224467567|gb|ACN45397.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi C
strain RKS4594]
Length = 671
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/664 (39%), Positives = 399/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY+ + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|148982028|ref|ZP_01816589.1| NAD-dependent DNA ligase LigA [Vibrionales bacterium SWAT-3]
gi|145960667|gb|EDK26012.1| NAD-dependent DNA ligase LigA [Vibrionales bacterium SWAT-3]
Length = 670
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 275/669 (41%), Positives = 402/669 (60%), Gaps = 36/669 (5%)
Query: 13 KLSFRVT--ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
K S +VT +L++ LH H + YY+ D+P I D +YD+L+ +L KIEE+ PEL+T DS +Q
Sbjct: 2 KESIQVTLEQLRETLHYHAVRYYVEDSPEIPDVEYDRLMQQLLKIEEENPELVTVDSPSQ 61
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + V H M+SLDN FSDED+ FNKR+++ + E K DG+A
Sbjct: 62 RVGGQPLDGFTQVTHEIPMLSLDNAFSDEDLDAFNKRMSDRAPTANLKTFCCEPKLDGLA 121
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L Y G L QA+TRGDG GENIT N+ I IPL L + PE +EVR EV + K
Sbjct: 122 VSLLYVNGTLVQAATRGDGATGENITENVRTISSIPLKLQGEGWPERIEVRGEVFMPKAG 181
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F KLN+ G K F NPRNAAAG LRQL+ +I + L F+A+ VG + G + +SH
Sbjct: 182 FDKLNEMALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVEGAELSTSHY 241
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL +C E LS + + +Y+ I +R L YEIDGVV K++ ++ Q+ L
Sbjct: 242 QRFLQLKGWGLPMCPETKQLSSLEDVKAYYQDIMTRRDALAYEIDGVVIKVDDIAAQEVL 301
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E +T + + Q+GRTG ITPVA L+P+ + G+T++ ATLHN
Sbjct: 302 GFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHN 361
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R +++GD+V++ R+G+VIP+I + + RP +K P+ CP+CNS + +E
Sbjct: 362 ADEIARLGVKVGDSVIIRRAGDVIPQIVAVVQDRRPETAKDIVFPDACPVCNSSVERVEG 421
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++
Sbjct: 422 EAVARCTGGLV-CQAQRKEALKHFVSRKALDVDGLGVKVIEQLVDREMVETPADLFKLSA 480
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
+ LDR+ K A N++ A+ K+K TT +RF+Y+LGIR VGE TA LA +FK LE +
Sbjct: 481 GVITVLDRMGPKSAQNVVSALNKAKDTTLARFLYSLGIREVGEATAMNLAQHFKTLELVQ 540
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL---NNPNTK------ 601
AT EQL+ + IG F +Q +R ++ QL ++G+ W + P+ +
Sbjct: 541 AATHEQLVEVSDIGDIVASHITAFFSQEKNRAVVEQLIELGVNWPVIEDVPDDQELPLEG 600
Query: 602 ------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
G KV +SK T+ L G+ G KL KA L I+I
Sbjct: 601 KVVVLTGSLSQLGRSEAKAALQALGAKVTGSVSKKTDILFAGEAAGSKLIKAQDLGIEIR 660
Query: 638 DEKNFVKIV 646
E++ + ++
Sbjct: 661 TEEDLIALL 669
>gi|215487666|ref|YP_002330097.1| NAD-dependent DNA ligase LigA [Escherichia coli O127:H6 str.
E2348/69]
gi|312967700|ref|ZP_07781915.1| DNA ligase, NAD-dependent [Escherichia coli 2362-75]
gi|417756658|ref|ZP_12404733.1| DNA ligase, NAD-dependent [Escherichia coli DEC2B]
gi|418997829|ref|ZP_13545423.1| DNA ligase, NAD-dependent [Escherichia coli DEC1A]
gi|419002953|ref|ZP_13550478.1| DNA ligase, NAD-dependent [Escherichia coli DEC1B]
gi|419008641|ref|ZP_13556072.1| DNA ligase, NAD-dependent [Escherichia coli DEC1C]
gi|419014331|ref|ZP_13561679.1| DNA ligase, NAD-dependent [Escherichia coli DEC1D]
gi|419019325|ref|ZP_13566632.1| DNA ligase, NAD-dependent [Escherichia coli DEC1E]
gi|419024827|ref|ZP_13572053.1| DNA ligase, NAD-dependent [Escherichia coli DEC2A]
gi|419029866|ref|ZP_13577029.1| DNA ligase, NAD-dependent [Escherichia coli DEC2C]
gi|419035367|ref|ZP_13582453.1| DNA ligase, NAD-dependent [Escherichia coli DEC2D]
gi|419040554|ref|ZP_13587582.1| DNA ligase, NAD-dependent [Escherichia coli DEC2E]
gi|254781317|sp|B7UGB2.1|DNLJ_ECO27 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|215265738|emb|CAS10145.1| DNA ligase, NAD(+)-dependent [Escherichia coli O127:H6 str.
E2348/69]
gi|312287897|gb|EFR15802.1| DNA ligase, NAD-dependent [Escherichia coli 2362-75]
gi|377843656|gb|EHU08696.1| DNA ligase, NAD-dependent [Escherichia coli DEC1A]
gi|377844159|gb|EHU09196.1| DNA ligase, NAD-dependent [Escherichia coli DEC1C]
gi|377847029|gb|EHU12033.1| DNA ligase, NAD-dependent [Escherichia coli DEC1B]
gi|377856299|gb|EHU21159.1| DNA ligase, NAD-dependent [Escherichia coli DEC1D]
gi|377860379|gb|EHU25205.1| DNA ligase, NAD-dependent [Escherichia coli DEC1E]
gi|377863611|gb|EHU28416.1| DNA ligase, NAD-dependent [Escherichia coli DEC2A]
gi|377874074|gb|EHU38705.1| DNA ligase, NAD-dependent [Escherichia coli DEC2B]
gi|377878048|gb|EHU42637.1| DNA ligase, NAD-dependent [Escherichia coli DEC2C]
gi|377879723|gb|EHU44295.1| DNA ligase, NAD-dependent [Escherichia coli DEC2D]
gi|377890594|gb|EHU55051.1| DNA ligase, NAD-dependent [Escherichia coli DEC2E]
Length = 671
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 265/661 (40%), Positives = 399/661 (60%), Gaps = 35/661 (5%)
Query: 20 ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGEN 79
EL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 10 ELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAPLAA 69
Query: 80 SKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGY 139
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE G
Sbjct: 70 FSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYENGV 129
Query: 140 LKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRY 199
L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 130 LVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINEDAR 189
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKI 259
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L ++
Sbjct: 190 RTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLMQFKAW 249
Query: 260 GLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRF 319
GL + ++ +++ FY ++ R L ++IDGVV K+N L+ Q++LGF +RAPR+
Sbjct: 250 GLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRW 309
Query: 320 ALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNI 379
A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R +
Sbjct: 310 AVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGL 369
Query: 380 QIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGS 439
+IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC+G
Sbjct: 370 RIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARCTGG 429
Query: 440 WIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRV 499
I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L+R+
Sbjct: 430 LI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAVKLTGLERM 488
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+L
Sbjct: 489 GPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQK 548
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP----------- 598
+P +G F + +R +IS+L G++W +++P
Sbjct: 549 VPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGS 608
Query: 599 -------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE +++
Sbjct: 609 LSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDETEMLRL 668
Query: 646 V 646
+
Sbjct: 669 L 669
>gi|323495433|ref|ZP_08100510.1| NAD-dependent DNA ligase LigA [Vibrio brasiliensis LMG 20546]
gi|323310356|gb|EGA63543.1| NAD-dependent DNA ligase LigA [Vibrio brasiliensis LMG 20546]
Length = 669
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 269/667 (40%), Positives = 401/667 (60%), Gaps = 34/667 (5%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
++ ++ +L++ LH H + YY+ D+P I D +YD+L+ EL +IE ++PEL++ DS +Q V
Sbjct: 4 QIQEKLNQLRESLHYHGVKYYVEDSPEIPDAEYDRLMRELMEIEAQHPELVSLDSPSQRV 63
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
G + V H M+SLDN F D ++ F+KR+++ L TK + E K DG+AV+
Sbjct: 64 GGAPLDGFDSVRHEIPMLSLDNAFDDSELDAFHKRMSDRLSGTKLDVFCCEPKLDGLAVS 123
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
L Y G QA+TRGDG GENIT N+ I IPL L + PE LEVR EV + K+ F
Sbjct: 124 LLYVNGVFVQAATRGDGATGENITENVRTIKAIPLKLQGEGWPERLEVRGEVFMPKEGFD 183
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
KLN+ G K F NPRNAAAG LRQL+ +I + L F+A+ VG + G + SH E
Sbjct: 184 KLNEQALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLSFYAYSVGVVEGATLSESHYER 243
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
+ GL +C E +++ + ++ +Y+ I +R LPYEIDGVV K++ ++ Q++LGF
Sbjct: 244 FLQLKGWGLPMCPETRLVANLEEVKAYYQDILTRRDALPYEIDGVVIKVDSIAAQEQLGF 303
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
+RAPR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 304 VARAPRWAIAYKFPAQEEITTLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNAD 363
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
EI R + +GD VV+ R+G+VIP+I S + RP +++ P CP+CNS + +E
Sbjct: 364 EIERLGVMVGDCVVIRRAGDVIPQIVSIVSDRRPENAREIVFPTNCPVCNSAVERVEGEA 423
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
+ARCSG + C AQRK L+HF SRKA+++ GLG+K+IE+LV+ +V T DL+K++
Sbjct: 424 VARCSGGLV-CQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDREMVETPADLFKLSAGV 482
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
+ LDR+ K A N++ A+ K+K TT RF+Y+LGIR VGE TA LA +FK LE + A
Sbjct: 483 ITVLDRMGPKSAQNVVDALVKAKETTLPRFLYSLGIREVGEATAANLAKHFKTLEAVQAA 542
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------ 594
+ + L+ + IG+ F Q ++++I LR G++W
Sbjct: 543 SHDDLIEVQDIGAIVASHITAFFAQDKNQMVIDDLRVQGVHWPDIEEKDQDAPQPLAGKV 602
Query: 595 ---------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
L + K G KV +SK T+ L G+ G KL KA L I+I E
Sbjct: 603 VVLTGSLSQLTRSDAKAALEGLGAKVTGSVSKKTDILFAGENAGSKLAKAQDLGIEIRTE 662
Query: 640 KNFVKIV 646
++ + ++
Sbjct: 663 EDLIALM 669
>gi|148828262|ref|YP_001293015.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittGG]
gi|166215779|sp|A5UIM6.1|DNLJ_HAEIG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|148719504|gb|ABR00632.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittGG]
Length = 670
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 274/666 (41%), Positives = 398/666 (59%), Gaps = 34/666 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++ L+K L ++ Y++ DNP + D++YD+L +LK +E ++PE LT DS TQ
Sbjct: 1 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGI 129
VG + H M+SLDN FSD + F KRI + L L K + + E K DG+
Sbjct: 61 RVGAKPLSGFSQIRHEIPMLSLDNAFSDTEFNAFVKRIEDRLILLPKPLTFCCEPKLDGL 120
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G L QA+TRGDG+ GE+IT NI I +PL L PP LEVR EV +
Sbjct: 121 AVSILYVNGVLTQAATRGDGSTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHA 180
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LNKY K F NPRNAAAG LRQL+P I + L A+G+G G+++P++H
Sbjct: 181 GFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDLPTTH 240
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
+ L W + IG+ + E + +G ++++ FY+ I KR +L Y+IDG V KIN ++ Q +
Sbjct: 241 YDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIALQNE 300
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF S+APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 301 LGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 360
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R NI IGDTVV+ R+G+VIP+I + RP+++K P CP+C+S+II IE
Sbjct: 361 NGDEIERLNIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIE 420
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++
Sbjct: 421 GEAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLD 479
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L RL+R+ K A N L +++ +K TT +RFI+ALGIR VGE TA LAN+FK L+ +
Sbjct: 480 LTTLTRLERMGAKSAENALNSLENAKSTTLARFIFALGIREVGEATALNLANHFKTLDAL 539
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
A E+L +P +G F + + ++ L G++W
Sbjct: 540 KDANLEELQQVPDVGEVVANRIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKD 599
Query: 595 ----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L T+ G KV +S T++++ G G KL KA +LNI +L
Sbjct: 600 KTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVL 659
Query: 638 DEKNFV 643
E+ F+
Sbjct: 660 TEEEFL 665
>gi|448243311|ref|YP_007407364.1| DNA ligase, NAD(+)-dependent [Serratia marcescens WW4]
gi|445213675|gb|AGE19345.1| DNA ligase, NAD(+)-dependent [Serratia marcescens WW4]
Length = 673
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 265/666 (39%), Positives = 401/666 (60%), Gaps = 37/666 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P + D +YD+L+ EL+++E +PEL+T DS TQ VG
Sbjct: 7 QINQLRATLRHHEYQYHVLDAPEVPDAEYDRLMRELRELESAHPELITADSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F +E + F KR+ + LK + + + ELK DG+AV+L YE
Sbjct: 67 LAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKSSDPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT+N+ I IPL L P LEVR EV + + F ++N+
Sbjct: 127 DGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGDNIPRRLEVRGEVFMPQAGFEQMNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SH E L +
Sbjct: 187 EARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHFERLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + +G +++ FY+++ R L ++IDGVV KI+ + Q+ LGF +RA
Sbjct: 247 KAWGLPVSDRAQRRTGSEEVLAFYRQVERDRAQLGFDIDGVVIKIDDIDLQETLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T ++ + Q+GRTG ITPVA L+PVL+ G+T++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIP++ + RP+D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDTVIVRRAGDVIPQVVGVLEDRRPHDAREVVFPLHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+IE+LV+ V DL++++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRALDVEGMGDKIIEQLVDKEYVKNPADLFRLSAGILTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++KSK TTF+RF+YALGIR VGE TA LA +F +LE +F A E
Sbjct: 486 DRMGPKSAQNLVNALEKSKQTTFARFLYALGIREVGEATAANLAAHFGSLEKLFAADIEA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL--RDVGIYW----------LNNP------ 598
L +P +G K F+++ L++ +I++L ++GI+W +++P
Sbjct: 546 LKEVPDVGEVVAKHTRNFLDEALNQQVINELVGAEIGIHWPAPVVVVAEEIDSPFAGKTV 605
Query: 599 ------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 VLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEA 665
Query: 641 NFVKIV 646
++++
Sbjct: 666 EMIRLL 671
>gi|432802610|ref|ZP_20036588.1| DNA ligase [Escherichia coli KTE84]
gi|431348088|gb|ELG34957.1| DNA ligase [Escherichia coli KTE84]
Length = 671
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 265/664 (39%), Positives = 400/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ EL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 KLIELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ FY ++ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|200388789|ref|ZP_03215401.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|199605887|gb|EDZ04432.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
Length = 671
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/666 (39%), Positives = 399/666 (59%), Gaps = 35/666 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY+ + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAVKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIVKG 648
++++
Sbjct: 666 IRLLDA 671
>gi|416426151|ref|ZP_11692770.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|416434492|ref|ZP_11697616.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|416438056|ref|ZP_11699265.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|416444077|ref|ZP_11703477.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|416450645|ref|ZP_11707671.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|416460774|ref|ZP_11715034.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|416470588|ref|ZP_11718977.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|416481134|ref|ZP_11723118.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|416498459|ref|ZP_11730308.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|416546219|ref|ZP_11753774.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|416577358|ref|ZP_11769744.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|416584768|ref|ZP_11774406.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|416591458|ref|ZP_11778462.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|416599710|ref|ZP_11783869.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|416603837|ref|ZP_11785698.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|416613726|ref|ZP_11792177.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|416624190|ref|ZP_11797890.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|416634208|ref|ZP_11802440.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|416643529|ref|ZP_11806064.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|416649046|ref|ZP_11809582.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|416656451|ref|ZP_11813204.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|416666927|ref|ZP_11817897.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|416683381|ref|ZP_11824332.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|416707673|ref|ZP_11832713.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|416711519|ref|ZP_11835299.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|416720487|ref|ZP_11842121.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|416721743|ref|ZP_11842876.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|416729821|ref|ZP_11848293.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|416737908|ref|ZP_11853006.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|416749313|ref|ZP_11859188.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|416756787|ref|ZP_11862726.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|416762762|ref|ZP_11866700.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|416770715|ref|ZP_11872045.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|418482682|ref|ZP_13051697.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|418492788|ref|ZP_13059265.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|418494393|ref|ZP_13060846.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|418498364|ref|ZP_13064779.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|418505043|ref|ZP_13071395.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|418506690|ref|ZP_13073020.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|418526051|ref|ZP_13092030.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|322613832|gb|EFY10771.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322617441|gb|EFY14340.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322624929|gb|EFY21758.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322629628|gb|EFY26404.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322633942|gb|EFY30679.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322635621|gb|EFY32332.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322639981|gb|EFY36651.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322644326|gb|EFY40867.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322655311|gb|EFY51620.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322658357|gb|EFY54623.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322664357|gb|EFY60554.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322668412|gb|EFY64568.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322673252|gb|EFY69358.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322676644|gb|EFY72712.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322683394|gb|EFY79408.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322685720|gb|EFY81713.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323192602|gb|EFZ77831.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323196835|gb|EFZ81978.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323202141|gb|EFZ87199.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323212850|gb|EFZ97659.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323217119|gb|EGA01841.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323219619|gb|EGA04102.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323229192|gb|EGA13316.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323235493|gb|EGA19577.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323237321|gb|EGA21384.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323245552|gb|EGA29550.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323248968|gb|EGA32891.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323253065|gb|EGA36897.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323255865|gb|EGA39610.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323261411|gb|EGA44996.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323266454|gb|EGA49942.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323269716|gb|EGA53166.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|340761445|gb|AEK67909.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|340761447|gb|AEK67910.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|340761449|gb|AEK67911.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|340761451|gb|AEK67912.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|340761453|gb|AEK67913.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|340761455|gb|AEK67914.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|340761457|gb|AEK67915.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|340761459|gb|AEK67916.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|340761461|gb|AEK67917.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|340761463|gb|AEK67918.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|340761465|gb|AEK67919.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|340761467|gb|AEK67920.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|340761469|gb|AEK67921.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|340761471|gb|AEK67922.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|340761473|gb|AEK67923.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|340761475|gb|AEK67924.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|340761477|gb|AEK67925.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|340761479|gb|AEK67926.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|340761481|gb|AEK67927.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|340761483|gb|AEK67928.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|340761485|gb|AEK67929.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|340761487|gb|AEK67930.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|340761489|gb|AEK67931.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|340761491|gb|AEK67932.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|340761493|gb|AEK67933.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|340761495|gb|AEK67934.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|340761497|gb|AEK67935.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|340761501|gb|AEK67937.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|340761503|gb|AEK67938.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|340761505|gb|AEK67939.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|340761507|gb|AEK67940.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|340761509|gb|AEK67941.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|340761513|gb|AEK67943.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|366054746|gb|EHN19091.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366061967|gb|EHN26207.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|366063155|gb|EHN27376.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|366069429|gb|EHN33553.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|366074141|gb|EHN38205.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|366082749|gb|EHN46680.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|366829225|gb|EHN56103.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|372206038|gb|EHP19543.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
Length = 671
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/664 (39%), Positives = 398/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEIPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVAVGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|425301273|ref|ZP_18691166.1| DNA ligase, NAD-dependent [Escherichia coli 07798]
gi|408212910|gb|EKI37415.1| DNA ligase, NAD-dependent [Escherichia coli 07798]
Length = 671
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 265/661 (40%), Positives = 398/661 (60%), Gaps = 35/661 (5%)
Query: 20 ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGEN 79
EL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 10 ELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAPLAA 69
Query: 80 SKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGY 139
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE G
Sbjct: 70 FSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLAVSILYENGV 129
Query: 140 LKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRY 199
L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 130 LVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINEDAR 189
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKI 259
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L ++
Sbjct: 190 RTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLMQFKAW 249
Query: 260 GLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRF 319
GL + ++ +++ FY ++ R L ++IDGVV K+N L+ Q++LGF +RAPR+
Sbjct: 250 GLPVSDRVTLCESAEEVLAFYHEVEKDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRW 309
Query: 320 ALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNI 379
A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R +
Sbjct: 310 AVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGL 369
Query: 380 QIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGS 439
+IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC+G
Sbjct: 370 RIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARCTGG 429
Query: 440 WIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRV 499
I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L+R+
Sbjct: 430 LI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERM 488
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+L
Sbjct: 489 GPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQK 548
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP----------- 598
+P +G F + +R +IS+L G++W +++P
Sbjct: 549 VPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPEPIVINAEEIDSPFAGKTVVLTGS 608
Query: 599 -------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE +++
Sbjct: 609 LSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEMLRL 668
Query: 646 V 646
+
Sbjct: 669 L 669
>gi|399114608|emb|CCG17402.1| DNA ligase [Taylorella equigenitalis 14/56]
Length = 681
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 277/671 (41%), Positives = 417/671 (62%), Gaps = 47/671 (7%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
LK + H+ AYY+ DNP ISD +YD L+ +L E+ +PE +T DS +Q VG V +
Sbjct: 12 LKSLISVHDKAYYIDDNPQISDEEYDGLMRKLLDYEQAHPEWVTSDSPSQRVGGVALKIF 71
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
V H M+SL N F+ E++ F R+ + + + E+ E KFDG+A+++RYE G L
Sbjct: 72 NSVRHAVPMLSLGNVFNPEELTAFYNRMVEAVG-SDDFEFNCEPKFDGLAISIRYENGVL 130
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNI---KYPPELLEVRCEVLIYKKDFIKLNKY 197
K ASTRGDG GE++T + I +PL LN+ + P+++EVR E L+ + DF L K
Sbjct: 131 KTASTRGDGLTGEDVTAQVSTIRTVPLKLNVPSKEALPKIIEVRGEALMLRSDFDNLVKR 190
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELR--GMNMPSSHSELLNW 255
+ GL+ F NPRNAAAG LRQL+PKI + L F+A+G+GE + G P S S+LL++
Sbjct: 191 QEEEGLQTFANPRNAAAGSLRQLDPKITAKRKLRFYAYGLGEFKSLGSEEPKSQSQLLDY 250
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
++G ++ +V G++ L+ F++ I KR LP++IDGVVYK++ Q+K+GF S+
Sbjct: 251 LSELGFAVTEYRAVKKGLDGLLNFFEHIKAKRDTLPFDIDGVVYKVDSFELQQKIGFVSK 310
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APRFA+A+KF +++ TK+ I +Q+GRTG +TPVA L+PV + G+T+ +ATLHNE EI
Sbjct: 311 APRFAIAHKFAAEQMQTKLLDIEVQVGRTGALTPVARLEPVFVGGVTVRKATLHNEDEIE 370
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
RKN+ IGDTV+V R+G+VIP++ +++ LRP D+ F +P ICP+C S + E +AR
Sbjct: 371 RKNLMIGDTVIVRRAGDVIPEVLEAVIDLRPEDAVKFVMPTICPVCGSAVEKPEGEAVAR 430
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G + C AQ G+ H SRKA+NI GLG K I+KLV+ + DL+K+ +L
Sbjct: 431 CTGGLV-CGAQITQGIIHAVSRKALNIEGLGDKHIQKLVSTEKIKRLDDLFKLTVDDLNI 489
Query: 496 LDRVSNK-----LANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L R + LA + IQ SK TT SRF++ALGIRHVGETTA++LA YF +L +
Sbjct: 490 LGRNAEDSKLEVLAPTLHARIQASKSTTLSRFLFALGIRHVGETTARDLAKYFGDLYSIM 549
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--------NPN--- 599
+A+ E+L+++P +G + F N+P +R +IS L ++G + LN NP
Sbjct: 550 QASTEELVSVPNVGEVMATSIHTFFNEPHNREVISNLLELG-FVLNAEEEAIQINPAIAG 608
Query: 600 ----------------------TKGGKVVNFISKNTNYLVKGQKPG-KKLEKAIKLNIKI 636
+ GG++ + +SK T+YL+ G +PG K++KA ++ KI
Sbjct: 609 HSFVVTGTLENWKRDEISQVIISSGGRINSSVSKKTDYLLMGAEPGDSKVKKAQEVGTKI 668
Query: 637 LDEKNFVKIVK 647
L E F+++++
Sbjct: 669 LSEAEFIQMLE 679
>gi|161612830|ref|YP_001586795.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|190359282|sp|A9N362.1|DNLJ_SALPB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|161362194|gb|ABX65962.1| hypothetical protein SPAB_00529 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 671
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/664 (39%), Positives = 398/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CSAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|145636448|ref|ZP_01792116.1| DNA ligase [Haemophilus influenzae PittHH]
gi|145270273|gb|EDK10208.1| DNA ligase [Haemophilus influenzae PittHH]
Length = 670
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 274/656 (41%), Positives = 392/656 (59%), Gaps = 34/656 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+K L ++ Y++ DNP + D++YD+L +LK +E ++PE LT DS TQ VG
Sbjct: 11 LRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVGAKPLSGF 70
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVNLRYEYGY 139
+ H M+SLDN FSD + F KRI + L L K + + E K DG+AV++ Y G
Sbjct: 71 SQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLPKPLTFCCEPKLDGLAVSILYVNGE 130
Query: 140 LKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRY 199
L QA+TRGDG GE+IT NI I +PL L PP LEVR EV + F +LNKY
Sbjct: 131 LTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMSHAGFERLNKYAL 190
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKI 259
K F NPRNAAAG LRQL+P I + L A+G+G G+++P++H L W + I
Sbjct: 191 EHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDLPTTHYARLQWLKSI 250
Query: 260 GLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRF 319
G+ + E + +G ++++ FY+ I KR +L Y+IDG V KIN ++ Q +LGF S+APR+
Sbjct: 251 GIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIALQNELGFISKAPRW 310
Query: 320 ALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNI 379
A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R NI
Sbjct: 311 AIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLHNGDEIERLNI 370
Query: 380 QIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGS 439
IGDTVV+ R+G+VIP+I + RP+++K P CP+C+S+II IE +ARC+G
Sbjct: 371 AIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIEGEAVARCTGG 430
Query: 440 WIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRV 499
C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++ L RLDR+
Sbjct: 431 LF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLDLTTLTRLDRM 489
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
K A N L +++ +K TT +RFI++LGIR VGE TA LAN+FK L+ + A E+L
Sbjct: 490 GTKSAENALNSLENAKSTTLARFIFSLGIREVGEATALNLANHFKTLDALKDANLEELQQ 549
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------LNNPNT 600
+P +G F + + ++ L G++W L T
Sbjct: 550 VPDVGEVVANRIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLT 609
Query: 601 K-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
+ G KV +S T++++ G G KL KA +LNI +L E+ F+
Sbjct: 610 QMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFL 665
>gi|422922223|ref|ZP_16955415.1| DNA ligase, NAD-dependent [Vibrio cholerae BJG-01]
gi|341646747|gb|EGS70854.1| DNA ligase, NAD-dependent [Vibrio cholerae BJG-01]
Length = 669
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 272/670 (40%), Positives = 400/670 (59%), Gaps = 34/670 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S + ++TEL++ LH H + YY+ D P I D +YD+L+ EL ++E +PEL++ DS +
Sbjct: 1 MSNVEQKLTELRQILHEHGVRYYVEDAPTIPDAEYDRLMRELLELEAAHPELMSSDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + V H M+SLDN F D ++ F +R+T+ + ++ + E K DG+A
Sbjct: 61 RVGGRPLDAFESVVHEIPMLSLDNAFDDSELDSFYRRMTDRIPAVQHSAFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKAIPLRLQGADFPTRLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH
Sbjct: 181 FEALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL IC E +++ + ++ FY+ I +R L YEIDGVV K++ + Q++L
Sbjct: 241 QRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQFLAYEIDGVVIKVDDIQLQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTVV+ R+G+VIP+I S +L RP ++K P CP+C S + +E
Sbjct: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARCSG I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 421 EAVARCSGGLI-CQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ A+ K+K TT +F+YALGIR VGE TA LA +F +LE +
Sbjct: 480 GELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQ 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+ EQ + +P +G F Q ++ +I++L + GI W
Sbjct: 540 QASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAG 599
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L+ + K G KV +SKNT+ + G+ G KL KA +L I++
Sbjct: 600 KIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDIVFAGEAAGSKLAKATELGIQVF 659
Query: 638 DEKNFVKIVK 647
DE+ ++ +K
Sbjct: 660 DEQALIEFLK 669
>gi|417359801|ref|ZP_12134088.1| DNA ligase [Salmonella enterica subsp. enterica serovar Give str.
S5-487]
gi|353588528|gb|EHC47548.1| DNA ligase [Salmonella enterica subsp. enterica serovar Give str.
S5-487]
Length = 671
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/664 (39%), Positives = 398/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVAVGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|417384664|ref|ZP_12149973.1| DNA ligase [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|418512788|ref|ZP_13079024.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|353608186|gb|EHC61839.1| DNA ligase [Salmonella enterica subsp. enterica serovar
Johannesburg str. S5-703]
gi|366083000|gb|EHN46928.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
Length = 671
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/664 (39%), Positives = 399/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY+ + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|227356188|ref|ZP_03840577.1| DNA ligase [Proteus mirabilis ATCC 29906]
gi|227163652|gb|EEI48568.1| DNA ligase [Proteus mirabilis ATCC 29906]
Length = 675
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 276/666 (41%), Positives = 398/666 (59%), Gaps = 36/666 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ EL+ L H Y++ D P I D +YD+L+ +LK +E ++PEL+T DS TQ VG +
Sbjct: 8 QIDELRVTLRHHEYLYHVMDAPEIPDAEYDRLMNKLKALEAEHPELITPDSPTQRVGALP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F + + F+KR+ LK + I + ELK DG+AV+L YE
Sbjct: 68 LTAFEQVRHEIPMLSLDNAFDETTYLAFDKRLRERLKNNEEITFCCELKLDGLAVSLLYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I IPL L P +E+R EV + +K F LN+
Sbjct: 128 NGRLVQAATRGDGTTGENITENVRTIKAIPLRLYGDNIPARIEIRGEVFMTEKGFEHLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SH L +
Sbjct: 188 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPTSHYARLQQF 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + + +G +++FY + R NL ++IDGVV K++ ++ Q++LGF SRA
Sbjct: 248 KKWGLPVSDAIKLCTGTKAVLDFYHHVAEIRPNLGFDIDGVVIKVDDIALQEELGFVSRA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T IK + Q+GRTG ITPVA L PV + G+ ++ ATLHN EI R
Sbjct: 308 PRWAIAYKFQAQEQMTVIKDVEFQVGRTGAITPVARLDPVQVAGVIVSNATLHNADEIER 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTVV+ R+G+VIP++ S I RP +++ P CPIC S I IE +ARC
Sbjct: 368 LGLRIGDTVVIRRAGDVIPQVVSVIEEKRPENAQEIVFPTQCPICQSDIERIEGEAVARC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL++++ K L L
Sbjct: 428 TGGLI-CAAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVKTPADLFRLDEKILSGL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A +L A++K+K TTF+RFIYALGIR VGE TA L +F +LE + +A E
Sbjct: 487 ERMGEKSAKKLLNALEKAKSTTFARFIYALGIREVGEATANGLTAHFVSLEALREANIEA 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYWL----------NNPNTK---- 601
L +P +G K + F + ++ +I QL D+GI W +NP
Sbjct: 547 LKAVPDVGDIVAKHVVNFFQEEHNKNVIDQLVNDIGITWPAPVVATHEAGDNPFAGKTVV 606
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 607 LTGSLSQLTRDEAKDRLVALGAKVSGSVSKKTDMVIAGEAAGSKLAKANELGITVIDEDE 666
Query: 642 FVKIVK 647
+++++
Sbjct: 667 MIRLLE 672
>gi|145634259|ref|ZP_01789970.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittAA]
gi|145268703|gb|EDK08696.1| NAD-dependent DNA ligase LigA [Haemophilus influenzae PittAA]
Length = 670
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 275/666 (41%), Positives = 395/666 (59%), Gaps = 34/666 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++ L+K L ++ Y++ DNP + D++YD+L +LK +E ++PE LT DS TQ
Sbjct: 1 MTNIQTQLDNLRKTLRQYEFEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGI 129
VG + H M+SLDN FSD + F KRI + L L K + + E K DG+
Sbjct: 61 RVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLPKPLTFCCEPKLDGL 120
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G L QA+TRGDG GE+IT NI I +PL L PP LEVR EV +
Sbjct: 121 AVSILYVNGVLTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHA 180
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LNKY K F NPRNAAAG LRQL+P I + L A+ +G G+N+P++H
Sbjct: 181 GFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYSIGIAEGVNLPTTH 240
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
L W + IG+ + E + +G ++++ FY+ I KR +L Y+IDG V KIN ++ Q +
Sbjct: 241 YARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIALQNE 300
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF S+APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 301 LGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 360
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R NI IGDTVV+ R+G+VIP+I + RP+++K P CP+C+S+II IE
Sbjct: 361 NGDEIERLNIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIE 420
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LVN ++ T DL+K++
Sbjct: 421 GEAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVNRELIHTPADLFKLD 479
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L RL+R+ K A N L +++ +K TT +RFI+ALGIR VGE TA LAN+FK L+ +
Sbjct: 480 LTTLTRLERMGAKSAENALNSLENAKSTTLARFIFALGIREVGEATALNLANHFKTLDAL 539
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
A E+L +P +G F + + ++ L G++W
Sbjct: 540 KDANLEELQQVPDVGEVVANRIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKD 599
Query: 595 ----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L T+ G KV +S T++++ G G KL KA +LNI +L
Sbjct: 600 KTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVL 659
Query: 638 DEKNFV 643
E+ F+
Sbjct: 660 TEEEFL 665
>gi|288941063|ref|YP_003443303.1| DNA ligase, NAD-dependent [Allochromatium vinosum DSM 180]
gi|288896435|gb|ADC62271.1| DNA ligase, NAD-dependent [Allochromatium vinosum DSM 180]
Length = 696
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 265/675 (39%), Positives = 402/675 (59%), Gaps = 40/675 (5%)
Query: 9 INFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSL 68
+ S ++ R+ L+ E+ HN YY+ D+P I D +YD+L EL+++E ++P L+T DS
Sbjct: 1 MTSSAITQRIEALRAEIRYHNHRYYVLDDPEIPDAEYDRLFAELQQLEAEHPALITPDSP 60
Query: 69 TQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDG 128
TQ VG V H M+SLDN SDE ++ F++R+T L + Y AE KFDG
Sbjct: 61 TQRVGAEPRPELGEVRHAVPMISLDNAMSDERLVEFHRRLTVALPEFDPVLYTAEPKFDG 120
Query: 129 IAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYK 188
+A+ LRYE G L A+TRGDG GE++T N I +PL L + PE+LEVR EV + +
Sbjct: 121 LAITLRYESGVLVLAATRGDGTRGEDVTHNARTIPNVPLRLLGEDWPEVLEVRGEVYMPR 180
Query: 189 KDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSS 248
F +LN G + F NPRNAAAG LRQL+P++ + L F A+G GE+ G S
Sbjct: 181 AGFDRLNARLEERGERPFANPRNAAAGSLRQLDPRVTARRPLRFCAYGWGEIAG-EPGES 239
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
E+L GL I E ++G++ ++++ + +R L Y+IDGVV+K++ LS Q
Sbjct: 240 QFEMLQRLAGWGLPISPELRQVAGLDGCRDYFEALGRRRATLDYDIDGVVFKLDRLSAQT 299
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
LG T+ PR+A+A KF ++EALT+++A+ Q+GRTG +TPVA L+PV + G+T+++ATL
Sbjct: 300 ALGATAHHPRWAIARKFPAQEALTEVEAVEFQVGRTGAVTPVARLRPVQVGGVTVSKATL 359
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYI 428
HN E+ RK+++IGD+V + R+G+VIP+I ++ RP+ +++ ++P CP+C S +I
Sbjct: 360 HNLDEVRRKDVRIGDSVYIRRAGDVIPEIVRVLVERRPDGARLVELPTQCPVCGSDVIRP 419
Query: 429 ESNLIARCSGS-WIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYK 487
E +ARCSG W C AQRK ++HF++R+A++I GLG+K+IE+LV+ V DLY+
Sbjct: 420 EGEAVARCSGGLW--CPAQRKEAIRHFAARRALDIEGLGEKLIEQLVDLEWVREPADLYR 477
Query: 488 INFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLE 547
+ L L+R+ K A N++ A++ SK TT +RF++ALGIR VGETTA+ LA + +E
Sbjct: 478 LTADRLALLERMGEKSAANLIAALEHSKRTTLARFVFALGIREVGETTAQLLAEHVGGIE 537
Query: 548 CMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------- 594
+ A+ E L+ I IG + F+ Q +R I+ L GI+W
Sbjct: 538 ALMAASVEDLVAIKGIGPVVAAHIVGFMAQAHNREAIAHLLAAGIHWPEVERSDSMPAEP 597
Query: 595 ---------------LNNPNTK--------GGKVVNFISKNTNYLVKGQKPGKKLEKAIK 631
L+ P + G KV +SK T+YL+ G + G KL KA
Sbjct: 598 SAAPLTGKTFVITGTLSRPREEFAARLQGLGAKVTGSVSKKTDYLLAGAEAGSKLAKAEA 657
Query: 632 LNIKILDEKNFVKIV 646
L + ++DE ++
Sbjct: 658 LGVVVIDEAGLESLI 672
>gi|365850580|ref|ZP_09391042.1| DNA ligase [Yokenella regensburgei ATCC 43003]
gi|364566781|gb|EHM44459.1| DNA ligase [Yokenella regensburgei ATCC 43003]
Length = 671
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 265/664 (39%), Positives = 399/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E ++PEL+T+DS TQ VG
Sbjct: 7 QLTELRTTLRHHEHLYHVMDAPEIPDAEYDRLMRELRELEAQHPELITRDSPTQRVGAEP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNSDKLTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE+IT+N+ I IPL L P LEVR EV + + F K+N
Sbjct: 127 NGELVQAATRGDGTTGEDITSNVRTIRAIPLKLRGANIPARLEVRGEVFLPQAGFEKIND 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + ++ +++ FY K+ R +L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KEWGLPVSDRVTLCESPEEVLAFYHKVEEDRPHLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C+S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETQEIVFPTHCPVCHSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+ + L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFTLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+Y LGIR VGE TA LA YF +LE + A+ E+
Sbjct: 486 DRMGPKSAQNVVNALEKAKQTTFARFLYGLGIREVGEATAAGLAGYFGSLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G+ W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEASNREVIQQLLKEGVSWPAPVVVNAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSLMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|419959258|ref|ZP_14475313.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae
GS1]
gi|388605769|gb|EIM34984.1| NAD-dependent DNA ligase LigA [Enterobacter cloacae subsp. cloacae
GS1]
Length = 671
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/664 (39%), Positives = 397/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P + D +YD+L+ EL+++E ++PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQRVGAEP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F +E + FNKR+ + LK N+ + ELK DG+AV++ YE
Sbjct: 67 LGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSVDNLSWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G + +A+TRGDG GE+ITTN+ I IPL L P LEVR EV + + F K+N+
Sbjct: 127 NGVMVRAATRGDGTTGEDITTNVRTIRAIPLKLRGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G ++P +H L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGDLPDTHLGRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + + ++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KEWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + + S RP D++ + P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVESERPADTRAIEFPAHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+ + L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFTLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A NI+ A++ +K TTF+RF+YALGIR VGE TA LA YF L+ + KAT ++
Sbjct: 486 ERMGPKSAQNIVNALEAAKNTTFARFLYALGIREVGEATAAGLAAYFGTLDALEKATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I +L + GI+W
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNREVIGKLLEQGIHWPAPVVVNAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 MRLL 669
>gi|205353534|ref|YP_002227335.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|375124379|ref|ZP_09769543.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|445134123|ref|ZP_21382806.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|254781410|sp|B5RCP9.1|DNLJ_SALG2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|205273315|emb|CAR38285.1| DNA ligase [Salmonella enterica subsp. enterica serovar Gallinarum
str. 287/91]
gi|326628629|gb|EGE34972.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|444847052|gb|ELX72203.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
Length = 671
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 262/664 (39%), Positives = 397/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY+ + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI +
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIEQ 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQTATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|429083632|ref|ZP_19146667.1| DNA ligase [Cronobacter condimenti 1330]
gi|426547471|emb|CCJ72708.1| DNA ligase [Cronobacter condimenti 1330]
Length = 672
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 261/665 (39%), Positives = 395/665 (59%), Gaps = 36/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++T+L+ L H Y++ D P + D +YD+L+ EL+ +EE +PEL+T DS TQ VG
Sbjct: 7 KLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELVTPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F + + FNKR+ + LK T + Y ELK DG+AV+L YE
Sbjct: 67 LTAFSQVRHEVPMLSLDNVFDETSFLAFNKRVQDRLKSTDALVYCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+IT N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P++ + L FF +GVG L G +P SH L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGELPRSHMGRLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ FY ++ R L ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 KAWGLPVSDRIRLVETPEEVLAFYHQVEADRPTLGFDIDGVVIKVDSLELQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +L+ RP +++ + P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLTERPEETRAIEFPAQCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F LE + KA+ +
Sbjct: 486 ERMGPKSAQNLVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALIKASIDD 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW----------LNNP------- 598
L +P +G F + +R +I L +VGI+W +++P
Sbjct: 546 LQKVPDVGVVVATHVFNFFEEESNRTVIRDLTEEVGIHWPAPVLIKAEEIDSPFAGKTIV 605
Query: 599 -----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G KV +SK T+ L+ G+ G KL KA +L + ++DE
Sbjct: 606 LTGTLNQMSRDDAKARLTALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGVDVIDEAE 665
Query: 642 FVKIV 646
++++
Sbjct: 666 MLRLL 670
>gi|261340751|ref|ZP_05968609.1| DNA ligase, NAD-dependent [Enterobacter cancerogenus ATCC 35316]
gi|288317173|gb|EFC56111.1| DNA ligase, NAD-dependent [Enterobacter cancerogenus ATCC 35316]
Length = 671
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 265/664 (39%), Positives = 397/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P + D +YD+L+ EL+++E ++PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQRVGAEP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDALTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+ITTN+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + ++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + + S RP+D++ + P+ CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVESERPDDTRAIEFPSHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++ +K TTF+RF+YALGIR VGE TA LA YF LE + KA+ ++
Sbjct: 486 DRMGPKSAQNVVNALETAKKTTFARFLYALGIREVGEATAAGLAAYFGTLEALEKASIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I +L GI W
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNREVIGKLLAEGISWPAPVVVNAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|78485583|ref|YP_391508.1| NAD-dependent DNA ligase [Thiomicrospira crunogena XCL-2]
gi|123741582|sp|Q31G89.1|DNLJ_THICR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|78363869|gb|ABB41834.1| DNA ligase, NAD-dependent [Thiomicrospira crunogena XCL-2]
Length = 672
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 266/660 (40%), Positives = 406/660 (61%), Gaps = 35/660 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L + L++H+ YY+ D+PIISD +YD L +L +IE+++P+ + +S +Q +G +
Sbjct: 10 LVESLNQHSYQYYVLDDPIISDPQYDVLYQKLLRIEDEHPDWILPESPSQRIGDEPLKEF 69
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
V H M SLDN F D+++ F KRI +L K++ + AE K DG+A+N+RYE G L
Sbjct: 70 HTVRHAVPMYSLDNAFEDDELKSFLKRIEEKLPDQKSLAFSAEPKMDGLAINIRYENGQL 129
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
QA+TRGDG +GE++T NI I+ +PL L PE++EVR EV + K F +LN+++
Sbjct: 130 VQATTRGDGQVGEDVTHNIRPIYSVPLKLFGNNWPEVVEVRGEVFMSKSAFEQLNEHQQE 189
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG-MNMPSSHSELLNWYQKI 259
+G K F NPRNAAAG LRQL+ K+ + L FF +G GEL +P +SE++ +
Sbjct: 190 IGGKIFANPRNAAAGSLRQLDSKVAAKRHLSFFLYGWGELSDDWQLPQYYSEMIEQLVEW 249
Query: 260 GLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRF 319
GL + ++SG+ + +Y+KI KR LPYEIDG+VYK+N + Q++LGFT+RAPR+
Sbjct: 250 GLPANPQSEIISGLEGMFAYYEKIQAKRSELPYEIDGIVYKLNDIKLQQQLGFTARAPRW 309
Query: 320 ALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNI 379
A+A KF ++E TK+ I +Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI RK++
Sbjct: 310 AIARKFPAEEVWTKLLDIEVQVGRTGAITPVARLQPVSVGGVIVSNATLHNMDEIKRKDV 369
Query: 380 QIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGS 439
+IGDTV+V R+G+VIP++ IL+ RP ++++F++P CP C S ++ + RC+G
Sbjct: 370 RIGDTVIVRRAGDVIPEVVGPILTQRPENTQLFEMPQHCPECGSDVVKELDKAVFRCTGG 429
Query: 440 WIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRV 499
+ C AQRK L HF SRKAM+I GLG K+I++LV+ V D Y + + L L+R+
Sbjct: 430 LV-CPAQRKRALHHFVSRKAMDIQGLGDKLIDQLVDKGWVKHPDDFYHLTVEKLATLERM 488
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
+ K A N++ IQ S TT ++FIY+LGI VGE TAK LAN+FK+L + +A E+L+
Sbjct: 489 AEKSAQNVITGIQASLETTLAKFIYSLGIPEVGEVTAKNLANHFKDLNAIKQAEFEELIT 548
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------- 594
+ +G + + F +P + +I L D G++W
Sbjct: 549 LNDVGEVVAEHIVNFFKEPHNESVIQGLLDAGMHWPTPETTLVNEDSPFANKVVVLTGTL 608
Query: 595 --LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
++ P K G K+ +S T+Y++ G+K G KL KA L + +L E ++ ++
Sbjct: 609 SEMSRPEAKVLLEAQGAKITGSVSAKTDYVIAGEKAGSKLTKAESLGVAVLSEAEWLAMM 668
>gi|229512467|ref|ZP_04401940.1| DNA ligase [Vibrio cholerae TMA 21]
gi|229350548|gb|EEO15495.1| DNA ligase [Vibrio cholerae TMA 21]
Length = 669
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 272/670 (40%), Positives = 401/670 (59%), Gaps = 34/670 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S + ++TEL++ LH H + YY+ D P I D +YD+L+ EL ++E +PEL++ DS +
Sbjct: 1 MSNVEQKLTELRQILHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSL 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + V H M+SLDN F D ++ F +R+T+ + ++ + E K DG+A
Sbjct: 61 RVGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L P LEVR EV + K
Sbjct: 121 VSLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F LN G K+F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH
Sbjct: 181 FEVLNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+ + GL IC E +++ + ++ FY+ I +R +L YEIDGVV K++ + Q++L
Sbjct: 241 QRFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTVV+ R+G+VIP+I S +L RP ++K P CP+C S + +E
Sbjct: 361 ADEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARCSG I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 421 EAVARCSGGLI-CQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ A+ K+K TT +F+YALGIR VGE TA LA +F +LE +
Sbjct: 480 GELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQ 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+ EQ + +P +G F Q ++ +I++L + GI W
Sbjct: 540 QASLEQFIEVPDVGVIVASHLQAFFAQDRNQQVINELLEQGITWPALTAAPVAVDSALAG 599
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L+ + K G KV +SKNT+ + G+ G KL KA +L I++
Sbjct: 600 KIVVLTGSFTQLSRNDAKAALQALGAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVF 659
Query: 638 DEKNFVKIVK 647
DE+ ++ +K
Sbjct: 660 DEQALIEFLK 669
>gi|354724584|ref|ZP_09038799.1| NAD-dependent DNA ligase LigA [Enterobacter mori LMG 25706]
Length = 671
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 265/664 (39%), Positives = 398/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P + D +YD+L+ EL+++E ++PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELETQHPELITPDSPTQRVGAEP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F +E + FNKR+ + LK + ++ + ELK DG+AV++ YE
Sbjct: 67 LGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDSLSWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+ITTN+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSNRVQLCDSPEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + + S RP +++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVESERPAETRAIVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++ +K TTF+RF+YALGIR VGE TA LA YF LE + KA+ ++
Sbjct: 486 DRMGPKSAQNVVNALEAAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALGKASIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I +L + GI W
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNREVIGKLLEEGIKWPAPVVVNAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 MRLL 669
>gi|389840101|ref|YP_006342185.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii ES15]
gi|387850577|gb|AFJ98674.1| NAD-dependent DNA ligase LigA [Cronobacter sakazakii ES15]
Length = 672
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/665 (39%), Positives = 392/665 (58%), Gaps = 36/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++T+L+ L H Y++ D P + D +YD+L+ EL+ +EE +PEL+T DS TQ VG
Sbjct: 7 KLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELVTPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F + + FNKR+ + LK T + Y ELK DG+AV+L YE
Sbjct: 67 LTEFSQVRHEVPMLSLDNVFDEASFLAFNKRVQDRLKSTDALVYCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+IT N+ I IPL L P LEVR EV + + F K+N+
Sbjct: 127 NGLLIRAATRGDGTTGEDITLNVRTIRAIPLKLRGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P++ + L FF +GVG L G +P SH E L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGELPRSHMERLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ FY ++ R L ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 KAWGLPVSERIRLVKTPEEVLAFYHQVEADRPTLGFDIDGVVIKVDSLELQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP ++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETSPVVFPAHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F LE + A+ +
Sbjct: 486 DRMGPKSAQNLVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALINASIDD 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW----------LNNP------- 598
L +P +G F + +R +I L +VGI+W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFEEESNRAVIRDLTEEVGIHWPAPQVVKAEEIDSPFAGKTVV 605
Query: 599 -----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G KV +SK T+ L+ G+ G KL KA +L I ++DE
Sbjct: 606 LTGTLSQMSRDDAKARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIDVIDEAE 665
Query: 642 FVKIV 646
++++
Sbjct: 666 MLRLL 670
>gi|198243638|ref|YP_002216496.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|375119983|ref|ZP_09765150.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|445147187|ref|ZP_21387943.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|445156528|ref|ZP_21392709.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|254781408|sp|B5FQB9.1|DNLJ_SALDC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|197938154|gb|ACH75487.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|326624250|gb|EGE30595.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|444844730|gb|ELX69956.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|444847657|gb|ELX72801.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
Length = 671
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 263/664 (39%), Positives = 396/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY+ + R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLVLQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQTATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|168238909|ref|ZP_02663967.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194734182|ref|YP_002115493.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|254781415|sp|B4TQF8.1|DNLJ_SALSV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|194709684|gb|ACF88905.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197288317|gb|EDY27698.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
Length = 671
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/664 (39%), Positives = 398/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|424034930|ref|ZP_17774283.1| DNA ligase, NAD-dependent, partial [Vibrio cholerae HENC-02]
gi|408901109|gb|EKM33846.1| DNA ligase, NAD-dependent, partial [Vibrio cholerae HENC-02]
Length = 664
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 277/660 (41%), Positives = 394/660 (59%), Gaps = 34/660 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ ELK+ LH H + YY+ DNP I D +YD+++ EL IE ++PEL+T DS +Q VG
Sbjct: 6 RLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPELVTVDSPSQRVGGQP 65
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F D ++ F+KR + + +Y E K DG+AV+L YE
Sbjct: 66 LSEFSQVTHEVPMLSLDNAFDDAELDGFHKRAQDRVVGHTIKQYCCEPKLDGLAVSLLYE 125
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I IPL L K P LEVR EV + K F KLN+
Sbjct: 126 DGVLVQAATRGDGTTGENITENVRTISAIPLKLQGKDWPTRLEVRGEVFMPKAGFDKLNE 185
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I ++ L F+A+ VG + G + +SH E
Sbjct: 186 IARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVEGATLANSHYERFLQI 245
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL +C E + + ++ +Y+ I +R L YEIDGVV K++ ++ Q++LGF +RA
Sbjct: 246 KSWGLPMCPETKRVDNLEEVKAYYQDILNRREALAYEIDGVVIKVDDIAIQERLGFVARA 305
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 306 PRWAIAYKFPAQEEITTLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIER 365
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
+ +GD VV+ R+G+VIP++ S I RP ++ PN CP+C S + IE + RC
Sbjct: 366 LQVMVGDQVVIRRAGDVIPQVVSVIKERRPETARELLFPNACPVCGSHVERIEGEAVTRC 425
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK L+HF SRKA+++ GLG+K+IE+LV+ +V T DL+K++ L L
Sbjct: 426 TGGLV-CQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDREMVETPADLFKLSAGVLTVL 484
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++KSKLTT RF+Y+LGIR VGE TA LA +FKNLE + +ATEEQ
Sbjct: 485 ERMGPKSATNVVNALEKSKLTTLPRFLYSLGIREVGEATAANLAQHFKNLETIEQATEEQ 544
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L+ + IG K F ++ ++ ++ L GI+W
Sbjct: 545 LVEVQDIGVIVAKHITTFFSEEKNQAVVQDLLAQGIHWPEIATPQEGVELPLEGKTVVLT 604
Query: 595 -----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
L K G KV +SK T+ L G+ G KL KA +L I+I E++ +
Sbjct: 605 GTLSQLGRSEAKEALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQTEQDLL 664
>gi|320157090|ref|YP_004189469.1| DNA ligase [Vibrio vulnificus MO6-24/O]
gi|319932402|gb|ADV87266.1| DNA ligase [Vibrio vulnificus MO6-24/O]
Length = 669
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 275/660 (41%), Positives = 395/660 (59%), Gaps = 34/660 (5%)
Query: 20 ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGEN 79
ELK++LH H + YY+ DNP I D +YD+++ EL IE ++PE ++ DS +Q VG V ++
Sbjct: 11 ELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWISVDSPSQRVGGVALDS 70
Query: 80 SKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGY 139
+ V H M+SLDN FSDE++ F KR + + + E K DG+AV+L YE G
Sbjct: 71 FRQVTHEIPMLSLDNAFSDEELESFLKRAQDRMPSAHIDAFCCEPKLDGLAVSLLYENGV 130
Query: 140 LKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRY 199
L QA+TRGDG GENIT N+ I +PL L + P +EVR EV + K F KLN
Sbjct: 131 LVQAATRGDGTTGENITENVRTIASVPLKLQGEGWPSRIEVRGEVFMPKAGFEKLNDIAR 190
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKI 259
G K F NPRNAAAG LRQL+ KI + L F+A+ VG + G+++ SSH + ++
Sbjct: 191 KKGEKVFVNPRNAAAGSLRQLDSKITATRPLAFYAYSVGVVEGISLSSSHYQRFLQLKQW 250
Query: 260 GLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRF 319
GL +C E +++G+ + FY I +R LPYEIDGVV KI+ + Q+KLGF +RAPR+
Sbjct: 251 GLPMCPETKLVNGLESVKAFYADILNRRDALPYEIDGVVIKIDDIVIQEKLGFVARAPRW 310
Query: 320 ALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNI 379
A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R +
Sbjct: 311 AIAYKFPAQEELTMLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIERLGV 370
Query: 380 QIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGS 439
+GDTVV+ R+G+VIP+I S + R D K P CP+C+S + IE + RCSG
Sbjct: 371 MVGDTVVIRRAGDVIPQIVSVVKDRRKGDEKNIIFPTACPVCHSHVERIEGEAVTRCSGG 430
Query: 440 WIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRV 499
+ C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+ ++ L L+R+
Sbjct: 431 LV-CQAQRKEALKHFVSRKALDVDGLGDKVIEQLVDKEMVETPADLFTLSAGVLTVLERM 489
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
K A NI+ A+ +K TT +RF+Y+LGIR VGE TA LA +FK LE + AT EQL+
Sbjct: 490 GPKSAQNIVNALNVAKETTLARFLYSLGIREVGEATAANLARHFKTLEAIQTATHEQLIE 549
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------- 594
+P IG + F + ++ ++ L + GI W
Sbjct: 550 VPDIGEVVARHITAFFAEEKNQRVVQALIEQGIVWPAVEELGSEIPQPLAGKVVVLTGTL 609
Query: 595 --LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
L+ + K G KV +SK T+ + G+ G KL KA +L ++I E++ + ++
Sbjct: 610 TQLSRGDAKAALERLGAKVTGSVSKKTDIVFAGEAAGSKLTKAQELGVEIQTEQDLLALL 669
>gi|385331276|ref|YP_005885227.1| NAD-dependent DNA ligase [Marinobacter adhaerens HP15]
gi|311694426|gb|ADP97299.1| NAD-dependent DNA ligase [Marinobacter adhaerens HP15]
Length = 678
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/662 (39%), Positives = 383/662 (57%), Gaps = 32/662 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV EL+ + HN YY+ D+P + D +YD+L EL+ +E YPEL + S T+ VG
Sbjct: 11 RVEELRSAIDDHNYRYYVLDDPRVPDAEYDRLFRELQGLETDYPELASDTSPTRRVGSAA 70
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SLDN FS++++ F++R+ + L +T+++EY+ E K DG+AV+L YE
Sbjct: 71 ETSFEEVVHRLPMLSLDNAFSEDELRDFDRRVKDRLGITEDVEYVCEPKLDGLAVSLHYE 130
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT NI I +PL L P+L+EVR EV + K F +LN+
Sbjct: 131 NGALTTAATRGDGYSGEDITANIRTIPSVPLKLRGDDVPDLVEVRGEVYMPKDGFEQLNR 190
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQ + + L A+ V +P + E L
Sbjct: 191 RLAERGEKTFVNPRNAAAGSLRQKKSTVTARRPLEMCAYSVAVTDESLLPDTQWEGLKRV 250
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
Q G I E G + +E Y ++ KR LPYEIDG+V+K+N L QK LGF SRA
Sbjct: 251 QSWGFRINPEMRKARGAEECLEAYSELMDKRDGLPYEIDGIVFKVNRLDQQKALGFVSRA 310
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A KF ++E LT I+ + Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R
Sbjct: 311 PRWAIAQKFPAQEELTVIEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNMDEIRR 370
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++ IGDTV + R+G+VIP++ + RP+ ++ ++P CP+C+S +I IE +ARC
Sbjct: 371 LDVHIGDTVFIRRAGDVIPQVVKVVAEKRPSGAREVELPRQCPVCDSDVIQIEGEAVARC 430
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG C AQRK ++H++SRKA++I GLG K I+ +V+ +V T DLY++ +L++L
Sbjct: 431 SGGLF-CPAQRKEAIRHYASRKALDIEGLGDKWIDIMVDQGMVETVADLYRLTTDDLVKL 489
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ AI +++ RF+YALGIR VGE TAK LA +F LE + A EE
Sbjct: 490 ERMGEKSAANLVAAIDRARNPVLWRFLYALGIREVGEATAKALAGHFGTLEAIAAADEES 549
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP------------------ 598
L +P +G F Q +R + LR+ G+ W
Sbjct: 550 LQTVPDVGPIVAGHIRSFFEQTHNRETLDALREAGVRWQEEEVREGEKPLKGQTWVLTGT 609
Query: 599 -------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
+ G KV +SK T +V G+ G KL KA +L + +LDE V +
Sbjct: 610 LSGMTRDEAKEKLESLGAKVAGSVSKKTACVVAGEAAGSKLAKAEQLEVPVLDEAGLVAL 669
Query: 646 VK 647
++
Sbjct: 670 LE 671
>gi|387888428|ref|YP_006318726.1| DNA ligase [Escherichia blattae DSM 4481]
gi|414593853|ref|ZP_11443494.1| DNA ligase [Escherichia blattae NBRC 105725]
gi|386923261|gb|AFJ46215.1| DNA ligase [Escherichia blattae DSM 4481]
gi|403195110|dbj|GAB81146.1| DNA ligase [Escherichia blattae NBRC 105725]
Length = 672
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/665 (39%), Positives = 395/665 (59%), Gaps = 36/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ L+ L H Y++ D P I D +YD+L+ EL+ +EE +P+L+T DS TQ VG
Sbjct: 7 QLAHLRATLRHHEYLYHVQDAPEIPDAEYDRLMRELRALEEAHPQLITADSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F +E F KR+ + L+ T+ I + ELK DG+AV+L YE
Sbjct: 67 LSEFTQVSHEVPMLSLDNVFDEESFRAFYKRVQDRLRNTEEITFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +ASTRGDG GENIT N+ I IPL L + P +EVR EV + + F K+N+
Sbjct: 127 DGLLVRASTRGDGTTGENITANVRTIRAIPLRLQGENIPARVEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L F+ +G G L G +P +H L +
Sbjct: 187 EARRSGGKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGFGLLEGGTLPDTHMGCLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +G +++FY ++ R L ++IDGVV K+N + Q++LGF +RA
Sbjct: 247 KTWGLPVSDRVRLCTGAQAVLDFYHQVETDRPGLGFDIDGVVIKVNDRALQEELGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIDR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTVVV R+G+VIP++ ++S RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDTVVVRRAGDVIPQVVGVVMSERPEDTREIVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G+K+I++LV+ V T DL+ + L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRALDVDGMGEKIIDQLVDKEYVHTPADLFGLTAGVLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K++ TTF+RF+YALGIR VGE TA LA YF LE + A+ ++
Sbjct: 486 DRMGPKSATNLVSALEKARQTTFARFLYALGIREVGEATAAGLAAYFGTLEALASASVDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW----------LNNP------- 598
L +P +G F + +R +I QL D GI+W +++P
Sbjct: 546 LQKVPDVGVVVANHVCHFFREESNREVIRQLVEDRGIHWEAPVVIRAEEIDSPFAGKTVV 605
Query: 599 -----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 LTGSLSIMSRDDAKARLVALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAE 665
Query: 642 FVKIV 646
++++
Sbjct: 666 MIRLL 670
>gi|197285679|ref|YP_002151551.1| NAD-dependent DNA ligase LigA [Proteus mirabilis HI4320]
gi|425068616|ref|ZP_18471732.1| DNA ligase [Proteus mirabilis WGLW6]
gi|425071918|ref|ZP_18475024.1| DNA ligase [Proteus mirabilis WGLW4]
gi|254781393|sp|B4EZR2.1|DNLJ_PROMH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|194683166|emb|CAR43788.1| DNA ligase [Proteus mirabilis HI4320]
gi|404598287|gb|EKA98773.1| DNA ligase [Proteus mirabilis WGLW4]
gi|404598995|gb|EKA99457.1| DNA ligase [Proteus mirabilis WGLW6]
Length = 675
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 276/665 (41%), Positives = 397/665 (59%), Gaps = 36/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ EL+ L H Y++ D P I D +YD+L+ +LK +E ++PEL+T DS TQ VG +
Sbjct: 8 QIDELRVTLRHHEYLYHVMDAPEIPDAEYDRLMNKLKALEAEHPELITPDSPTQRVGALP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F + + F+KR+ LK + I + ELK DG+AV+L YE
Sbjct: 68 LTAFEQVRHEIPMLSLDNAFDETTYLAFDKRLRERLKNNEEITFCCELKLDGLAVSLLYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I IPL L P +E+R EV + +K F LN+
Sbjct: 128 NGRLVQAATRGDGTTGENITENVRTIKAIPLRLYGDNIPARIEIRGEVFMTEKGFEHLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SH L +
Sbjct: 188 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPTSHYARLQQF 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + + +G +++FY + R NL ++IDGVV K++ ++ Q++LGF SRA
Sbjct: 248 KKWGLPVSDAIKLCTGTKAVLDFYHHVAEIRPNLGFDIDGVVIKVDDIALQEELGFVSRA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T IK + Q+GRTG ITPVA L PV + G+ ++ ATLHN EI R
Sbjct: 308 PRWAIAYKFQAQEQMTVIKDVEFQVGRTGAITPVARLDPVQVAGVIVSNATLHNADEIER 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTVV+ R+G+VIP++ S I RP +++ P CPIC S I IE +ARC
Sbjct: 368 LGLRIGDTVVIRRAGDVIPQVVSVIEEKRPENAQEIVFPTQCPICQSDIERIEGEAVARC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL++++ K L L
Sbjct: 428 TGGLI-CAAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVKTPADLFRLDEKILSGL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A +L A++K+K TTF+RFIYALGIR VGE TA L +F +LE + +A E
Sbjct: 487 ERMGEKSAKKLLNALEKAKSTTFARFIYALGIREVGEATANGLTAHFVSLEALREANIEA 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYWL----------NNPNTK---- 601
L +P +G K + F + ++ +I QL D+GI W +NP
Sbjct: 547 LKAVPDVGDIVAKHVVNFFQEEHNKNVIDQLVNDIGITWPAPVVATHEAGDNPFAGKTVV 606
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 607 LTGSLSQLTRDEAKDRLVALGAKVSGSVSKKTDMVIAGEAAGSKLAKANELGITVIDEDE 666
Query: 642 FVKIV 646
++++
Sbjct: 667 MIRLL 671
>gi|332162521|ref|YP_004299098.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386307521|ref|YP_006003577.1| DNA ligase [Yersinia enterocolitica subsp. palearctica Y11]
gi|418242995|ref|ZP_12869492.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|433548517|ref|ZP_20504567.1| DNA ligase [Yersinia enterocolitica IP 10393]
gi|318606605|emb|CBY28103.1| DNA ligase [Yersinia enterocolitica subsp. palearctica Y11]
gi|325666751|gb|ADZ43395.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330860741|emb|CBX71032.1| DNA ligase [Yersinia enterocolitica W22703]
gi|351777544|gb|EHB19750.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|431791077|emb|CCO67607.1| DNA ligase [Yersinia enterocolitica IP 10393]
Length = 672
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 263/664 (39%), Positives = 395/664 (59%), Gaps = 36/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P I D +YD+L+ +L+++E ++PEL+T DS TQ VG
Sbjct: 7 QINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITNDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SLDN F +E + F+KR+ + LK + + ELK DG+AV+L YE
Sbjct: 67 LDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRADPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT N+ I IPL L P +EVR EV + F +LN
Sbjct: 127 DGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVFMPLAGFEQLNN 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SH + L +
Sbjct: 187 EARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHIQRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +G ++I FY+++ R L ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 RAWGLPVSDRVKLCTGSEQVIAFYRQVEQDRGGLGFDIDGVVIKVDSLDLQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T+++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIP++ ++ RP D+K P CP+C S I +E +ARC
Sbjct: 367 LGLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEITFPEHCPVCGSDIERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SR+A+++ G+G K+IE+LV V DL+ + L L
Sbjct: 427 TGGLF-CAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFTLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N+++A++K+K TTF+RF+YALGIR VGE TA LA +F+NLE + A E
Sbjct: 486 DRMGPKSAQNLIVALEKAKQTTFARFLYALGIREVGEATAANLAAHFRNLENLRAADIEA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L ++P +G K + F+ + ++ +I L V I W +++P
Sbjct: 546 LKSVPDVGEVVAKHVVNFLGEEHNQKVIEALEKV-ITWPEPQQIIAEEIDSPFAGKTVVL 604
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 605 TGSLTILSRDEAKDRLAALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 664
Query: 643 VKIV 646
++++
Sbjct: 665 IRLL 668
>gi|322831833|ref|YP_004211860.1| NAD-dependent DNA ligase [Rahnella sp. Y9602]
gi|321167034|gb|ADW72733.1| DNA ligase, NAD-dependent [Rahnella sp. Y9602]
Length = 673
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 260/672 (38%), Positives = 401/672 (59%), Gaps = 37/672 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++++L+ +L H Y++ D P + D +YD+L+ EL+++E +PEL+T DS TQ
Sbjct: 1 MATIEEQISQLRTQLRHHEYQYHVLDAPEVPDAEYDRLMRELRELETAHPELVTADSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + V H M+SLDN F +E + F KR+ + LK + + + ELK DG+A
Sbjct: 61 RVGAAPLSAFEQVRHRVPMLSLDNVFDEESYLAFYKRVQDRLKTAEALTFCCELKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L QA+TRGDG GENIT N+ I IPL L+ PE LEVR EV + +
Sbjct: 121 VSLLYENGELVQAATRGDGTTGENITANVRTIRAIPLRLHGDNIPERLEVRGEVFMPQAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F +N G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SH
Sbjct: 181 FEAMNDEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHF 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
L ++ GL + + +G +++ FY+++ R +L ++IDGVV KI+ L Q+ L
Sbjct: 241 ARLQQFKAWGLPVSDRVRLCTGSEEVLAFYRQVEADRPSLGFDIDGVVVKIDSLDIQETL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A A+KF ++E +T +K + Q+GRTG ITPVA L+PVL+ G+ ++ ATLHN
Sbjct: 301 GFVARAPRWATAFKFPAQEQITLVKDVEFQVGRTGAITPVARLEPVLVAGVMVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R ++IGDTV+V R+G+VIP++ +L RP D++ P CP+C+S + +E
Sbjct: 361 ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVLDERPEDAREVVFPTHCPVCHSDVERVEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+ I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++
Sbjct: 421 EAVARCTAGLI-CGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVKTPADLFRLTA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L LDR+ K A N++ A++K+K TT +RF+YALGIR VGE TA LA ++ ++E +
Sbjct: 480 GKLTGLDRMGPKSAQNVVRALEKAKETTLARFLYALGIREVGEATAANLAAHYGSVEALK 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQL--RDVGIYW----------LNNP 598
A E L + +G K + F+++ ++ +I +L ++ I+W +++P
Sbjct: 540 AADIESLKGVQDVGDVVAKHVVNFLSEEHNQQVIDELLSPEINIHWPEVQVIVPEEIDSP 599
Query: 599 ------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNI 634
G KV +SK T+ ++ G+ G KL KA +L I
Sbjct: 600 FAGKTVVLTGSLSILSRDDAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGI 659
Query: 635 KILDEKNFVKIV 646
+++DE ++++
Sbjct: 660 EVIDEAEMIRLL 671
>gi|375002258|ref|ZP_09726598.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|353076946|gb|EHB42706.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
Length = 671
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/664 (39%), Positives = 398/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|261854791|ref|YP_003262074.1| DNA ligase, NAD-dependent [Halothiobacillus neapolitanus c2]
gi|261835260|gb|ACX95027.1| DNA ligase, NAD-dependent [Halothiobacillus neapolitanus c2]
Length = 685
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 269/666 (40%), Positives = 396/666 (59%), Gaps = 37/666 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG--L 74
R+ L+ E+ RHN YY+ D+P ISD +D+L+ EL++IE +PE +T DS TQ VG
Sbjct: 20 RLLALRDEIERHNFRYYVLDDPEISDAAFDRLMRELQQIESAHPEWITPDSPTQRVGSPT 79
Query: 75 VGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLR 134
+ HH M+SLDN FS E+ F +RI + LK + + AE KFDG+A+NL
Sbjct: 80 FTTRFAPVTHHQ-AMLSLDNVFSVEEWDAFTQRIQDRLKRDAPLVFAAEPKFDGLAINLI 138
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVL-NIKYPPELLEVRCEVLIYKKDFIK 193
Y G L QA+TRGDG GE++T N+ I IP L + +LLEVR E+++ K F
Sbjct: 139 YRQGQLVQAATRGDGQTGEDVTLNVRTIAAIPQQLPDSLLSCDLLEVRGEIVMSHKAFAA 198
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253
LN G K+F NPRNAAAG LRQ +P+I + L FFA+GVG + G ++P S LL
Sbjct: 199 LNAAADARGDKRFVNPRNAAAGSLRQKDPRITAKRQLQFFAYGVGAVDGADLPDSQLGLL 258
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
+W +G ++ G ++++ + ++++ +R L Y+IDGVV+KIN S Q LGF
Sbjct: 259 DWLADLGFTVSEWRRRCEGRDEVLAYQQEMSARRSQLDYDIDGVVFKINAQSEQDALGFV 318
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
++APR+A+A+KF ++EA +++ A++ Q+GRTG +TPVA + PV + G+T++ TLHN E
Sbjct: 319 AKAPRWAIAFKFPAEEATSRVHAVDFQVGRTGALTPVARIDPVFVGGVTVSNITLHNIDE 378
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
I RK+I+IGDTVVV R+G+VIP++ + LRP D+++ +P CP+C S+++ E I
Sbjct: 379 ITRKDIRIGDTVVVRRAGDVIPEVVRVLPELRPADARLVALPATCPVCGSEVVRAEGEAI 438
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
ARCSG C AQR+ ++HF+SRKAMNI GLG+K IE L+ +V DL+ + +
Sbjct: 439 ARCSGGLF-CPAQRREAIKHFASRKAMNIDGLGEKWIELLLEHKLVEHVDDLFHLTVPQV 497
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
L L R+ K A N++ A+ +K TT RF+YALGIR VGE TA LA +F+NL+ + AT
Sbjct: 498 LTLPRMGEKSAQNLVDALSAAKQTTLPRFLYALGIREVGEVTAAGLAAHFRNLDALNAAT 557
Query: 554 EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK------------ 601
E L +P +G + F+ QP ++ +I L D G++W T
Sbjct: 558 LEDLQAVPDVGPVVAQHVFTFLRQPHNQEVIRNLIDAGVHWPAIVATDANALPLAGRTYV 617
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G KV +S T ++ G + G KL KA L + +LDE +
Sbjct: 618 LTGTLVGMSREEAGERLKALGAKVSGSVSSKTTAVIAGSEAGSKLTKANDLGVPVLDETD 677
Query: 642 FVKIVK 647
K+++
Sbjct: 678 LQKLLR 683
>gi|237732406|ref|ZP_04562887.1| NAD-dependent DNA ligase LigA [Citrobacter sp. 30_2]
gi|226907945|gb|EEH93863.1| NAD-dependent DNA ligase LigA [Citrobacter sp. 30_2]
Length = 671
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 263/664 (39%), Positives = 397/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E ++PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMCELRELEAQHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDKLTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPTRLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 EARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGVLPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + ++ +++ +Y K+ R L ++IDGVV K+N + Q++LGF +RA
Sbjct: 247 KEWGLPVSDRVTLCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSMVLQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP+D++ + P CP+CNS + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPDDTREIEFPTHCPVCNSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+ + L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFTLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F LE + A+ E+
Sbjct: 486 DRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL GI+W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNREVIVQLLAQGIHWPAPVVINAEEIDSPFAGKTVVL 605
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSLMSRDDAKARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|168466836|ref|ZP_02700690.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|418763942|ref|ZP_13320047.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|418765569|ref|ZP_13321652.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|418769972|ref|ZP_13325997.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|418775814|ref|ZP_13331766.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|418781657|ref|ZP_13337533.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|418782944|ref|ZP_13338799.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|418804279|ref|ZP_13359887.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|419789249|ref|ZP_14314931.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|419795334|ref|ZP_14320933.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|195630762|gb|EDX49354.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|392612768|gb|EIW95235.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392615753|gb|EIW98189.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392731087|gb|EIZ88318.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|392738175|gb|EIZ95321.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|392740082|gb|EIZ97208.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|392745894|gb|EJA02913.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|392747376|gb|EJA04375.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|392758488|gb|EJA15355.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|392771574|gb|EJA28293.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
Length = 671
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 264/664 (39%), Positives = 398/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAVKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|238790828|ref|ZP_04634584.1| DNA ligase [Yersinia frederiksenii ATCC 33641]
gi|238721075|gb|EEQ12759.1| DNA ligase [Yersinia frederiksenii ATCC 33641]
Length = 670
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 261/664 (39%), Positives = 400/664 (60%), Gaps = 36/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P I D +YD+L+ +L+ +E ++PEL+T DS TQ VG
Sbjct: 7 QINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITNDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F +E + F+KR+ + LK + + + ELK DG+AV+L YE
Sbjct: 67 LDAFDQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAEPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT N+ I IPL L+ P +EVR EV + + F +LN+
Sbjct: 127 EGELVRAATRGDGTTGENITVNVRTIRAIPLRLHGDNIPRRVEVRGEVFMPQAGFEQLNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SH + L +
Sbjct: 187 EARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGELPRSHIQRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +G +++I FY+++ R +L ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 KAWGLPVSNRVKLCTGSDQVIAFYRQVEQDRASLGFDIDGVVIKVDSLDLQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T+++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIP++ ++ RP D+K P+ CP+C S I +E +ARC
Sbjct: 367 LGLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEITFPDHCPVCGSDIERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SR+A+++ G+G K+IE+LV V DL+ + L L
Sbjct: 427 TGGLF-CAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFTLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N+++A++K+K TTF+RF+YALGIR VGE TA LA +F+ L+ + A E
Sbjct: 486 DRMGPKSAQNLIVALEKAKQTTFARFLYALGIREVGEATAANLAAHFRTLDNLRAADIEA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L ++P +G K + F+++ ++ +I L V I W +++P
Sbjct: 546 LKSVPDVGEVVAKHVLNFLSEEHNQKVIETLEKV-ISWPEPQQIIAEEIDSPFAGKTVVL 604
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 605 TGSLTILSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEM 664
Query: 643 VKIV 646
++++
Sbjct: 665 IRLL 668
>gi|384256950|ref|YP_005400884.1| NAD-dependent DNA ligase LigA [Rahnella aquatilis HX2]
gi|380752926|gb|AFE57317.1| NAD-dependent DNA ligase LigA [Rahnella aquatilis HX2]
Length = 673
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 260/672 (38%), Positives = 401/672 (59%), Gaps = 37/672 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++++L+ +L H Y++ D P + D +YD+L+ EL+++E +PEL+T DS TQ
Sbjct: 1 MATIEEQISQLRTQLRHHEYQYHVLDAPEVPDAEYDRLMRELRELETAHPELVTADSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + V H M+SLDN F +E + F KR+ + LK + + + ELK DG+A
Sbjct: 61 RVGAAPLSAFEQVRHRVPMLSLDNVFDEESYLAFYKRVQDRLKTAEALTFCCELKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L QA+TRGDG GENIT N+ I IPL L+ PE LEVR EV + +
Sbjct: 121 VSLLYENGELVQAATRGDGTTGENITANVRTIRAIPLRLHGDNIPERLEVRGEVFMPQAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F +N G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SH
Sbjct: 181 FEAMNDEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHF 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
L ++ GL + + +G +++ FY+++ R +L ++IDGVV KI+ L Q+ L
Sbjct: 241 ARLQQFKAWGLPVSDRVRLCTGSEEVLAFYRQVEADRPSLGFDIDGVVVKIDSLDIQETL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A A+KF ++E +T +K + Q+GRTG ITPVA L+PVL+ G+ ++ ATLHN
Sbjct: 301 GFVARAPRWATAFKFPAQEQITLVKDVEFQVGRTGAITPVARLEPVLVAGVMVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R ++IGDTV+V R+G+VIP++ +L RP D++ P CP+C+S + +E
Sbjct: 361 ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVLDERPEDAREVVFPTHCPVCHSDVERVEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+ I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++
Sbjct: 421 EAVARCTAGLI-CGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVKTPADLFRLTA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L LDR+ K A N++ A++K+K TT +RF+YALGIR VGE TA LA ++ ++E +
Sbjct: 480 GKLTGLDRMGPKSAQNVVSALEKAKETTLARFLYALGIREVGEATAANLAAHYGSVEALK 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQL--RDVGIYW----------LNNP 598
A E L + +G K + F+++ ++ +I +L ++ I+W +++P
Sbjct: 540 AADIESLKGVQDVGDVVAKHVVNFLSEEHNQQVIDELLSPEINIHWPEVQVIVPEEIDSP 599
Query: 599 ------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNI 634
G KV +SK T+ ++ G+ G KL KA +L I
Sbjct: 600 FAGKTVVLTGSLSILSRDDAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGI 659
Query: 635 KILDEKNFVKIV 646
+++DE ++++
Sbjct: 660 EVIDEAEMIRLL 671
>gi|161761269|ref|YP_248767.2| NAD-dependent DNA ligase LigA [Haemophilus influenzae 86-028NP]
gi|386266193|ref|YP_005829685.1| NAD-dependent DNA ligase [Haemophilus influenzae R2846]
gi|166215835|sp|Q4QLJ0.2|DNLJ_HAEI8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|309973429|gb|ADO96630.1| NAD-dependent DNA ligase [Haemophilus influenzae R2846]
Length = 670
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 274/666 (41%), Positives = 396/666 (59%), Gaps = 34/666 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++ L+K L ++ Y++ DNP + D++YD+L +LK +E ++PE LT DS TQ
Sbjct: 1 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGI 129
VG + H M+SLDN FSD + F KRI + L L K + + E K DG+
Sbjct: 61 RVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLPKPLTFCCEPKLDGL 120
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G L QA+TRGDG GE+IT NI I +PL L PP LEVR EV +
Sbjct: 121 AVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHA 180
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LNKY K F NPRNAAAG LRQL+P I + L A+G+G G+++P++H
Sbjct: 181 GFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGIDLPTTH 240
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
+ L W + IG+ + E + +G ++++ FY+ I KR +L Y+IDG V KIN ++ Q +
Sbjct: 241 YDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIALQNE 300
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF S+APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 301 LGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 360
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R NI IGDTVV+ R+G+VIP+I + RP+++K P CP+C+S+II IE
Sbjct: 361 NGDEIERLNIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIE 420
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++
Sbjct: 421 GEAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLD 479
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L RL+R+ K A N L +++ +K TT RFI+ALGIR VGE TA LAN+FK L+ +
Sbjct: 480 LTTLTRLERMGAKSAENALNSLENAKSTTLDRFIFALGIREVGEATALNLANHFKTLDAL 539
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
A E+L +P +G F + + ++ L G++W
Sbjct: 540 KDANLEELQQVPDVGEVVANRIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKD 599
Query: 595 ----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L T+ G KV +S T++++ G G KL KA +LNI +L
Sbjct: 600 KTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDGAGSKLAKAQELNITVL 659
Query: 638 DEKNFV 643
E+ F+
Sbjct: 660 TEEEFL 665
>gi|311278661|ref|YP_003940892.1| NAD-dependent DNA ligase [Enterobacter cloacae SCF1]
gi|308747856|gb|ADO47608.1| DNA ligase, NAD-dependent [Enterobacter cloacae SCF1]
Length = 671
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 259/664 (39%), Positives = 399/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++T L+ L H Y++ D P + D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTALRATLRHHEYLYHVMDAPELPDAEYDRLMRELRELEAKHPELITPDSPTQRVGAEP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LGAFSQVRHEIPMLSLDNVFDEESFLAFNKRVQDRLKSSDKLTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+IT N+ I IPL L P +EVR EV + + F K+N
Sbjct: 127 NGLLVRAATRGDGTTGEDITANVRTIRAIPLKLRGDDVPARVEVRGEVFLPQAGFEKIND 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SH L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHLGRLRQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ + +++ +Y+K+ R L ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 KSWGLPVSSRVTLCNSPEEVLAYYRKVEEDRPTLGFDIDGVVIKVDSLELQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP+D++ + P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPDDTREIEFPAHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V+T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRALDVEGMGDKIIDQLVEKEYVLTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K T+F+RF+YALGIR VGE TA LA ++ +LE + A+ +
Sbjct: 486 DRMGPKSAQNVVNALEKAKETSFARFLYALGIREVGEATAAGLAAHYGSLEALIAASIDD 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL GI+W +++P
Sbjct: 546 LQTVPDVGIVVATHVFNFFAEESNREVIQQLLAEGIHWPAPVVVKAEEIDSPFAGKTVVL 605
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSLMSRDDAKARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|168817829|ref|ZP_02829829.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|409251089|ref|YP_006886893.1| DNA ligase [Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|205345161|gb|EDZ31925.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|320086917|emb|CBY96687.1| DNA ligase [Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
Length = 671
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 264/666 (39%), Positives = 398/666 (59%), Gaps = 35/666 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLNQMSRDDAKERLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEM 665
Query: 643 VKIVKG 648
++++
Sbjct: 666 IRLLDA 671
>gi|358450456|ref|ZP_09160919.1| DNA ligase, NAD-dependent [Marinobacter manganoxydans MnI7-9]
gi|357225387|gb|EHJ03889.1| DNA ligase, NAD-dependent [Marinobacter manganoxydans MnI7-9]
Length = 678
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 264/662 (39%), Positives = 383/662 (57%), Gaps = 32/662 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV EL+ + HN YY+ D+P + D +YD+L EL+ +E YPEL + S T+ VG
Sbjct: 11 RVEELRSAIDDHNYRYYVLDDPRVPDAEYDRLFRELQGLETDYPELASDTSPTRRVGSAA 70
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SLDN FS++++ F++R+ + L +T+++EY+ E K DG+AV+L YE
Sbjct: 71 ETSFEEVVHRLPMLSLDNAFSEDELRDFDRRVKDRLGITEDVEYVCEPKLDGLAVSLHYE 130
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT NI I +PL L P+L+EVR EV + K F +LN+
Sbjct: 131 NGALTTAATRGDGYSGEDITANIRTIPSVPLKLRGDDVPDLVEVRGEVYMPKDGFEQLNR 190
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQ + + L A+ V +P + E L
Sbjct: 191 RLAERGEKTFVNPRNAAAGSLRQKKSTVTARRPLEMCAYSVAVTDESLLPDTQWEGLKRV 250
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
Q G I E G + +E Y ++ KR LPYEIDG+V+K+N L QK LGF SRA
Sbjct: 251 QSWGFRINPEMRKAKGAEECLEAYSELMDKRDGLPYEIDGIVFKVNRLDQQKALGFVSRA 310
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A KF ++E LT I+ + Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R
Sbjct: 311 PRWAIAQKFPAQEELTVIEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNMDEIRR 370
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++ IGDTV + R+G+VIP++ + RP+ ++ ++P CP+C+S +I IE +ARC
Sbjct: 371 LDVHIGDTVFIRRAGDVIPQVVKVVAEKRPSGAREVELPRQCPVCDSDVIQIEGEAVARC 430
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG C AQRK ++H++SRKA++I GLG K I+ +V+ +V T DLY++ +L++L
Sbjct: 431 SGGLF-CPAQRKEAIRHYASRKALDIEGLGDKWIDIMVDQGMVETVADLYRLTTDDLVKL 489
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ AI +++ RF+YALGIR VGE TAK LA +F LE + A EE
Sbjct: 490 ERMGEKSAANLVAAIDRARNPVLWRFLYALGIREVGEATAKGLAGHFGTLEAIAAADEES 549
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP------------------ 598
L +P +G F Q +R + LR+ G+ W
Sbjct: 550 LQTVPDVGPIVAGHIRSFFEQTHNRETLDALREAGVRWQEEEVREGEKPLKGQTWVLTGT 609
Query: 599 -------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
+ G KV +SK T +V G+ G KL KA +L + +LDE V +
Sbjct: 610 LSGMTRDEAKERLESLGAKVAGSVSKKTACVVAGEAAGSKLAKAEQLEVPVLDEAGLVAL 669
Query: 646 VK 647
++
Sbjct: 670 LE 671
>gi|294504743|ref|YP_003568805.1| DNA ligase [Yersinia pestis Z176003]
gi|384123209|ref|YP_005505829.1| DNA ligase [Yersinia pestis D106004]
gi|384127065|ref|YP_005509679.1| DNA ligase [Yersinia pestis D182038]
gi|420553360|ref|ZP_15050635.1| DNA ligase, NAD-dependent [Yersinia pestis PY-02]
gi|420590852|ref|ZP_15084333.1| DNA ligase, NAD-dependent [Yersinia pestis PY-09]
gi|420638807|ref|ZP_15127311.1| DNA ligase, NAD-dependent [Yersinia pestis PY-25]
gi|420670873|ref|ZP_15156268.1| DNA ligase, NAD-dependent [Yersinia pestis PY-45]
gi|420681830|ref|ZP_15166207.1| DNA ligase, NAD-dependent [Yersinia pestis PY-47]
gi|420698133|ref|ZP_15180594.1| DNA ligase, NAD-dependent [Yersinia pestis PY-53]
gi|420714792|ref|ZP_15194847.1| DNA ligase, NAD-dependent [Yersinia pestis PY-56]
gi|420747555|ref|ZP_15223693.1| DNA ligase, NAD-dependent [Yersinia pestis PY-64]
gi|420758742|ref|ZP_15233196.1| DNA ligase, NAD-dependent [Yersinia pestis PY-66]
gi|420764071|ref|ZP_15237829.1| DNA ligase, NAD-dependent [Yersinia pestis PY-71]
gi|420796162|ref|ZP_15266453.1| DNA ligase, NAD-dependent [Yersinia pestis PY-91]
gi|420801214|ref|ZP_15270993.1| DNA ligase, NAD-dependent [Yersinia pestis PY-92]
gi|420854888|ref|ZP_15319104.1| DNA ligase, NAD-dependent [Yersinia pestis PY-103]
gi|262362805|gb|ACY59526.1| DNA ligase [Yersinia pestis D106004]
gi|262366729|gb|ACY63286.1| DNA ligase [Yersinia pestis D182038]
gi|294355202|gb|ADE65543.1| DNA ligase [Yersinia pestis Z176003]
gi|391424663|gb|EIQ87016.1| DNA ligase, NAD-dependent [Yersinia pestis PY-02]
gi|391458799|gb|EIR17634.1| DNA ligase, NAD-dependent [Yersinia pestis PY-09]
gi|391509005|gb|EIR62676.1| DNA ligase, NAD-dependent [Yersinia pestis PY-25]
gi|391539551|gb|EIR90263.1| DNA ligase, NAD-dependent [Yersinia pestis PY-45]
gi|391552981|gb|EIS02358.1| DNA ligase, NAD-dependent [Yersinia pestis PY-47]
gi|391568788|gb|EIS16468.1| DNA ligase, NAD-dependent [Yersinia pestis PY-53]
gi|391584255|gb|EIS29812.1| DNA ligase, NAD-dependent [Yersinia pestis PY-56]
gi|391616027|gb|EIS57733.1| DNA ligase, NAD-dependent [Yersinia pestis PY-64]
gi|391630480|gb|EIS70236.1| DNA ligase, NAD-dependent [Yersinia pestis PY-66]
gi|391635792|gb|EIS74909.1| DNA ligase, NAD-dependent [Yersinia pestis PY-71]
gi|391668438|gb|EIT03672.1| DNA ligase, NAD-dependent [Yersinia pestis PY-91]
gi|391678711|gb|EIT12900.1| DNA ligase, NAD-dependent [Yersinia pestis PY-92]
gi|391725677|gb|EIT55115.1| DNA ligase, NAD-dependent [Yersinia pestis PY-103]
Length = 656
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 260/656 (39%), Positives = 398/656 (60%), Gaps = 36/656 (5%)
Query: 25 LHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVH 84
+ H Y++ D P I D +YD+++ +L+ +E ++PEL+T DS TQ VG + + V
Sbjct: 1 MRHHEHQYHVLDAPEIPDAEYDRMMQQLRDLEAQHPELVTNDSPTQRVGAAPLDAFEQVK 60
Query: 85 HTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQAS 144
H M+SLDN F +E + F+KR+ + LK + + + ELK DG+AV+L YE G L +A+
Sbjct: 61 HEVPMLSLDNVFDEESYLAFDKRVHDRLKTAEPLTFCCELKLDGLAVSLLYENGELVRAA 120
Query: 145 TRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLK 204
TRGDG GENIT N+ I IPL L+ P +EVR EV + + F +LN+ G K
Sbjct: 121 TRGDGTTGENITANVRTIRAIPLRLHGDNVPRRVEVRGEVFMPQAGFEQLNEEARRKGGK 180
Query: 205 KFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSIC 264
F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SH + L ++ GL +
Sbjct: 181 VFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLDGGELPRSHIQCLMQFKAWGLPVS 240
Query: 265 GEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYK 324
+ +G +++I FY++I R L ++IDGVV K++ L+ Q++LGF +RAPR+A A+K
Sbjct: 241 ERVKLCTGSDQVIAFYRQIEQDRAGLGFDIDGVVIKVDDLALQEQLGFVARAPRWATAFK 300
Query: 325 FLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDT 384
F ++E +T+++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R ++IGDT
Sbjct: 301 FPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIERLGLRIGDT 360
Query: 385 VVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECI 444
V+V R+G+VIP++ ++ RP+D+K P+ CP+C S I +E +ARC+G C
Sbjct: 361 VIVRRAGDVIPQVVGVVMEQRPDDTKEITFPSQCPVCGSDIERVEGEAVARCTGGLF-CA 419
Query: 445 AQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLA 504
AQRK L+HF SR+A+++ G+G K+IE+LV V DL+++ L LDR+ K A
Sbjct: 420 AQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFQLTAGKLTGLDRMGPKSA 479
Query: 505 NNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIG 564
N++ A++K+K TTF+RF+YALGIR VGE TA LA +F+ L+ + A E L ++P +G
Sbjct: 480 QNLIAALEKAKQTTFARFLYALGIREVGEATAANLAAHFRTLDNLRAADIETLKSVPDVG 539
Query: 565 STTVKAFIKFINQPLHRLLISQLRDVGIYW----------------------------LN 596
K + F+++ ++ +I +L V + W L+
Sbjct: 540 EVVAKHVMNFLSEEHNQKVIEELEKV-VSWPEPQQIVVEESDSPFAGKTVVLTGSLTILS 598
Query: 597 NPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
K G KV +SK T+ ++ G+ G KL KA +L IK++DE ++++
Sbjct: 599 RDEAKDRLTALGAKVSGSVSKKTHLVIAGEAAGSKLAKAQELGIKVIDEAEMIRLL 654
>gi|90410985|ref|ZP_01218999.1| DNA ligase [Photobacterium profundum 3TCK]
gi|90328198|gb|EAS44509.1| DNA ligase [Photobacterium profundum 3TCK]
Length = 697
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 271/659 (41%), Positives = 395/659 (59%), Gaps = 34/659 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+++L H YY+ DNP I D +YD+++ +L +E +PEL++ DS +Q VG + ++
Sbjct: 38 LREQLAYHGHRYYVEDNPEIPDAEYDRMMQQLLALEADHPELMSVDSPSQRVGGMPLDSF 97
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
V H M+SLDN F+DE++ F KR+ + L + Y E K DG+AV+L YE G L
Sbjct: 98 TQVKHELPMLSLDNAFNDEELHAFEKRLLDRLITAGQVSYCCEPKLDGLAVSLMYENGVL 157
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
QA+TRGDG GENITTN+ I IPL L + P LEVR EV + KK F +LN
Sbjct: 158 VQAATRGDGATGENITTNVRTIRSIPLKLQGEGWPLRLEVRGEVFMPKKGFDELNARALK 217
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIG 260
G K F NPRNAAAG LRQL+ KI + L F+A+ VG + GM++ S + L + G
Sbjct: 218 KGDKAFANPRNAAAGSLRQLDSKIAATRPLSFYAYSVGVVEGMDLADSQYDRLVQLKGWG 277
Query: 261 LSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFA 320
+ +C E L + +I +Y+ I +R +L YEIDGVV K++ + TQ++LGF +RAPR+A
Sbjct: 278 IPMCPEIRQLKTIKDVIAYYQDIGERRQSLSYEIDGVVIKVDDVETQEQLGFVARAPRWA 337
Query: 321 LAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQ 380
+AYKF ++E +T + + Q+GRTG ITPVA L+P+ + G+T++ ATLHN E+ R +
Sbjct: 338 IAYKFPAQEEMTLLNNVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHNADEVARLGVM 397
Query: 381 IGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSW 440
IGDTV++ R+G+VIP+I S + S RP ++ P CP+C S + +E +ARCSG
Sbjct: 398 IGDTVIIRRAGDVIPQIVSVVESRRPANALSIIFPETCPVCKSNVERVEGEAVARCSGGL 457
Query: 441 IECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS 500
C AQRK L+HF SRKA+++ G G+K+IE+LV+ +V T L+K++ + LDR+
Sbjct: 458 F-CQAQRKEALKHFVSRKALDVDGCGEKVIEQLVDREMVTTPAGLFKLSAGVVTVLDRMG 516
Query: 501 NKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNI 560
K A ++ ++ SK TT RFIY+LGIR VGE TA LAN+F+ LE + A++EQLL +
Sbjct: 517 PKSAQKLVDSLANSKETTLPRFIYSLGIREVGEATAANLANHFETLEAITAASKEQLLVV 576
Query: 561 PKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------------- 594
P +G + F + + ++ L VGI+W
Sbjct: 577 PDVGEVVANNLLNFFREAHNMDVVEDLIAVGIHWPAIEKPEEGVELPLDGKVVVLTGSLS 636
Query: 595 -LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
L + K G KV +SK T+ LV G+ G KL KA +L+I+I DE+ V ++
Sbjct: 637 QLTRSDAKAALQALGAKVTGSVSKKTDLLVAGEAAGSKLTKAQELDIEIWDEQALVDLM 695
>gi|16765747|ref|NP_461362.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|167991721|ref|ZP_02572820.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|197262860|ref|ZP_03162934.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|374982056|ref|ZP_09723378.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
str. TN061786]
gi|378445848|ref|YP_005233480.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
str. D23580]
gi|378451151|ref|YP_005238510.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|378700331|ref|YP_005182288.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
str. SL1344]
gi|378984986|ref|YP_005248141.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378989808|ref|YP_005252972.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|379701657|ref|YP_005243385.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|422026715|ref|ZP_16373094.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|422031743|ref|ZP_16377896.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|427552135|ref|ZP_18928389.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|427568518|ref|ZP_18933107.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|427588893|ref|ZP_18937903.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|427612269|ref|ZP_18942764.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|427636201|ref|ZP_18947661.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|427656742|ref|ZP_18952426.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|427661986|ref|ZP_18957334.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|427672118|ref|ZP_18962151.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|427799477|ref|ZP_18967425.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|81522316|sp|Q8ZN89.1|DNLJ_SALTY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|16420966|gb|AAL21321.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|197241115|gb|EDY23735.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|205329843|gb|EDZ16607.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|261247627|emb|CBG25454.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
str. D23580]
gi|267994529|gb|ACY89414.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301158979|emb|CBW18492.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
str. SL1344]
gi|312913414|dbj|BAJ37388.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321222873|gb|EFX47944.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhimurium
str. TN061786]
gi|323130756|gb|ADX18186.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|332989355|gb|AEF08338.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|414017133|gb|EKT00877.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|414017865|gb|EKT01555.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|414019006|gb|EKT02633.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|414031543|gb|EKT14598.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|414032763|gb|EKT15754.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|414036013|gb|EKT18858.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|414046066|gb|EKT28418.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|414046983|gb|EKT29287.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|414051874|gb|EKT33953.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|414058759|gb|EKT40397.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|414064356|gb|EKT45309.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
Length = 671
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 265/664 (39%), Positives = 397/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY + R L ++IDGVV K+N L+ Q+ LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQELLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++KSK TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKSKTTTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|319776649|ref|YP_004139137.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3047]
gi|329124164|ref|ZP_08252711.1| NAD-dependent DNA ligase LigA [Haemophilus aegyptius ATCC 11116]
gi|317451240|emb|CBY87473.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3047]
gi|327467589|gb|EGF13087.1| NAD-dependent DNA ligase LigA [Haemophilus aegyptius ATCC 11116]
Length = 670
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 274/656 (41%), Positives = 392/656 (59%), Gaps = 34/656 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+K L ++ Y++ DNP + D++YD+L +LK +E ++PE LT DS TQ VG
Sbjct: 11 LRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVGAKPLSGF 70
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVNLRYEYGY 139
+ H M+SLDN FSD + F KRI + L L K + + E K DG+AV++ Y G
Sbjct: 71 SQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLPKPLTFCCEPKLDGLAVSILYVNGE 130
Query: 140 LKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRY 199
L QA+TRGDG GE+IT NI I +PL L PP LEVR EV + F +LNKY
Sbjct: 131 LTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHAGFERLNKYAL 190
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKI 259
K F NPRNAAAG LRQL+P I + L A+G+G G+++P++H L W + I
Sbjct: 191 EHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDLPTTHYARLQWLKSI 250
Query: 260 GLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRF 319
G+ + E + +G ++++ FY+ I KR +L Y+IDG V KIN ++ Q +LGF S+APR+
Sbjct: 251 GIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIALQNELGFISKAPRW 310
Query: 320 ALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNI 379
A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R NI
Sbjct: 311 AIAYKFPAQEELTLLNDVEFQVGRTGTITPVAKLEPVFVAGVTVSNATLHNGDEIERLNI 370
Query: 380 QIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGS 439
IGDTVV+ R+G+VIP+I + RP+++K P CP+C+S+II IE +ARC+G
Sbjct: 371 AIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIEGEAVARCTGG 430
Query: 440 WIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRV 499
C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++ L RL+R+
Sbjct: 431 LF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLDLTTLTRLERM 489
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
K A N L +++ +K TT +RFI+ALGIR VGE TA LAN+FK L+ + A E+L
Sbjct: 490 GAKSAENALNSLENAKSTTLARFIFALGIREVGEATALNLANHFKTLDALKDANLEELQQ 549
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------LNNPNT 600
+P +G F + + ++ L G++W L T
Sbjct: 550 VPDVGEVVANRIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKDKTVVLTGTLT 609
Query: 601 K-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
+ G KV +S T++++ G G KL KA +LNI +L E+ F+
Sbjct: 610 QMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVLTEEEFL 665
>gi|56412686|ref|YP_149761.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197361620|ref|YP_002141256.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|81362021|sp|Q5PNE2.1|DNLJ_SALPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|254781414|sp|B5BB72.1|DNLJ_SALPK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|56126943|gb|AAV76449.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A
str. ATCC 9150]
gi|197093096|emb|CAR58535.1| DNA ligase [Salmonella enterica subsp. enterica serovar Paratyphi A
str. AKU_12601]
Length = 671
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 264/664 (39%), Positives = 398/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|29140957|ref|NP_804299.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213160907|ref|ZP_03346617.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213424270|ref|ZP_03357114.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213583650|ref|ZP_03365476.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213650852|ref|ZP_03380905.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|378958576|ref|YP_005216062.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi str.
P-stx-12]
gi|29136582|gb|AAO68148.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi str.
Ty2]
gi|374352448|gb|AEZ44209.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi str.
P-stx-12]
Length = 671
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 264/664 (39%), Positives = 398/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|331005395|ref|ZP_08328777.1| DNA ligase [gamma proteobacterium IMCC1989]
gi|330420789|gb|EGG95073.1| DNA ligase [gamma proteobacterium IMCC1989]
Length = 707
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 268/683 (39%), Positives = 412/683 (60%), Gaps = 39/683 (5%)
Query: 5 AKKKINFS---KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPE 61
A ++FS +L ++ EL++++H ++ YY DNP I D +YD+L EL+ +E++ P
Sbjct: 22 AAHSLDFSSITQLDQQLNELREKIHHYSYQYYALDNPTIPDAEYDRLFLELQTLEKENPS 81
Query: 62 LLTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITN---ELKLTKN- 117
+T DS TQ VG V H M+SLDN FS ED+ F++R+T L +T N
Sbjct: 82 YVTSDSPTQRVGAQPLSVFSQVTHRLPMLSLDNAFSAEDLREFHRRVTERLASLDITVNE 141
Query: 118 IEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPEL 177
IEY E K DGIAV+L Y+ G L Q +TRGDG GE+IT N+ I IPL L P+
Sbjct: 142 IEYACEPKLDGIAVSLVYQKGILVQGATRGDGKTGEDITQNVRTIASIPLRLQGDNYPDD 201
Query: 178 LEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGV 237
LEVR E+ + K F KLNK K+F NPRNAAAG LRQL+ +I + L A+ V
Sbjct: 202 LEVRGEIYLPKAGFEKLNKIADAREEKRFANPRNAAAGSLRQLDSRITAQRPLEMCAYSV 261
Query: 238 GELRGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGV 297
G + G +P+ HS++L G I E + + G+ +++ +++ KR LPY+IDG+
Sbjct: 262 GVVDGGQVPTKHSDILYALSAWGFRINQEMASVKGIEACCDYFDQLSKKRNALPYDIDGI 321
Query: 298 VYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVL 357
V+K++ + QK+LGF SRAPR+A+A KF ++E LT++ + Q+GRTG ITPVA LKPV
Sbjct: 322 VFKVDSIELQKQLGFVSRAPRWAIAQKFPAQEELTELLDVEFQVGRTGAITPVARLKPVF 381
Query: 358 IDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNI 417
+ G+T++ ATLHN E+ R ++IGD V++ R+G+VIP+I S+++ RP+ ++ P+
Sbjct: 382 VGGVTVSNATLHNSDEVERLGVKIGDRVIIRRAGDVIPQIVSAVIDQRPDHARDIIFPSS 441
Query: 418 CPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNAN 477
CP+C S + +E RCSG + C AQ K ++H+ SRKAM++ GLG K++E+LV
Sbjct: 442 CPVCTSPTVRVEGEATIRCSGGLV-CPAQIKQAIKHYVSRKAMDVDGLGDKLVEQLVELG 500
Query: 478 IVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAK 537
+ + DLY + + L ++R+ K A+N++ A+++SK TTF+RFIYALG+R VGE TA+
Sbjct: 501 HITSVADLYDLQVEQLANMERMGEKSASNVIHALEQSKNTTFARFIYALGVREVGEATAR 560
Query: 538 ELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--- 594
LA YF ++ + ATEE L + +G + + F++Q ++ +I++L++ G++W
Sbjct: 561 NLAQYFGDISRLLTATEEDLQRVNDVGPVVAQFIVAFLSQQKNKEVIAKLQEKGVHWEVI 620
Query: 595 --LNNPN----------------TK----------GGKVVNFISKNTNYLVKGQKPGKKL 626
+NP T+ G V +SK T++LV G+ G KL
Sbjct: 621 EQQDNPQPLLDTVYVLTGTLEQLTRDEAKAHLQQLGATVTGSVSKKTHFLVAGENAGSKL 680
Query: 627 EKAIKLNIKILDEKNFVKIVKGF 649
KA L + IL E++ + ++ +
Sbjct: 681 TKAESLGVNILGEQDLINLLNEY 703
>gi|149374973|ref|ZP_01892746.1| DNA ligase, NAD-dependent [Marinobacter algicola DG893]
gi|149360862|gb|EDM49313.1| DNA ligase, NAD-dependent [Marinobacter algicola DG893]
Length = 676
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 267/658 (40%), Positives = 390/658 (59%), Gaps = 32/658 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R EL+ + HN YY+ D+P + D +YD+L EL+ +E +YP+++T D+ T+ VG
Sbjct: 11 RAGELRDIITEHNYQYYVLDDPRVPDAEYDRLFRELQDLETQYPDIVTPDTPTRRVGGSV 70
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN FSDE++ F++R+ + LK +IEY+ E K DG+AV+L YE
Sbjct: 71 ETTFEEVVHRIPMLSLDNAFSDEELRDFDRRVKDRLKTGDDIEYVCEPKLDGLAVSLHYE 130
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+IT NI I +PL L PEL+EVR EV + ++ F LN+
Sbjct: 131 SGVLTRAATRGDGYTGEDITANIRTIPSVPLRLRGDKVPELVEVRGEVYMPREGFEALNR 190
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ G K F NPRNAAAG LRQ P + + L A+ V +P++H E L
Sbjct: 191 RLANKGEKTFVNPRNAAAGSLRQKKPTVTARRPLELCAYSVALEDESLLPATHWEGLQQV 250
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
G I E +G ++ Y ++ KR +LPYEIDG+V+K+N L+ Q++LGF SRA
Sbjct: 251 SAWGFRINPEMRRATGAEDCLQAYNELMGKRASLPYEIDGIVFKVNSLALQQQLGFVSRA 310
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A KF ++E LT I+ + Q+GRTG ITPVA LKPV + G+T++ ATLHN EI R
Sbjct: 311 PRWAIAQKFPAQEELTVIEDVEFQVGRTGAITPVARLKPVFVGGVTVSNATLHNMDEIRR 370
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
+ +IGDTV V R+G+VIP++ + RP +++ ++P+ CP+C S I+ IE ++ARC
Sbjct: 371 LDARIGDTVFVRRAGDVIPQVVKVVAERRPANAREVELPDACPVCQSDIVQIEGEVVARC 430
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG C AQRK ++H++SRKA++I GLG K I+ LV+ +V T DLY + +L L
Sbjct: 431 SGGLF-CPAQRKEAIRHYASRKALDIEGLGDKWIDILVDRELVNTVADLYLLKKADLTGL 489
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ AI +S+ +F+YALGIR VGE TAK LA+YF LE + +A E+
Sbjct: 490 ERMGEKSAGNLIDAIDRSRKPVLWKFLYALGIREVGEATAKGLASYFGTLESISEADEDA 549
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L ++P +G F +Q ++ I L+D G+ W
Sbjct: 550 LQSVPDVGPIVAGHIRSFFDQTHNQETIQALKDAGVQWQAEEITASQKPLKGETWVLTGS 609
Query: 595 ---LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
+ + K G KV +S T+ +V G+ G KL KA L + ++DE FV
Sbjct: 610 LSGMTRDDAKSKLESLGAKVAGSVSGKTSCVVAGEAAGSKLTKAENLGVPVMDESAFV 667
>gi|30995424|ref|NP_439257.2| NAD-dependent DNA ligase LigA [Haemophilus influenzae Rd KW20]
gi|145638086|ref|ZP_01793696.1| DNA ligase [Haemophilus influenzae PittII]
gi|166214918|sp|P43813.2|DNLJ_HAEIN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|145272415|gb|EDK12322.1| DNA ligase [Haemophilus influenzae PittII]
gi|309751252|gb|ADO81236.1| NAD-dependent DNA ligase [Haemophilus influenzae R2866]
Length = 670
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 274/666 (41%), Positives = 396/666 (59%), Gaps = 34/666 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++ L+K L ++ Y++ DNP + D++YD+L +LK +E ++PE LT DS TQ
Sbjct: 1 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGI 129
VG + H M+SLDN FSD + F KRI + L L K + + E K DG+
Sbjct: 61 RVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLPKPLTFCCEPKLDGL 120
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G L QA+TRGDG GE+IT NI I +PL L PP LEVR EV +
Sbjct: 121 AVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHA 180
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LNKY K F NPRNAAAG LRQL+P I + L A+G+G G+++P++H
Sbjct: 181 GFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDLPTTH 240
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
L W + IG+ + E + +G ++++ FY+ I KR +L Y+IDG V KIN ++ Q +
Sbjct: 241 YARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIALQNE 300
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF S+APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 301 LGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 360
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R NI IGDTVV+ R+G+VIP+I + RP+++K P CP+C+S+II IE
Sbjct: 361 NGDEIERLNIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIE 420
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++
Sbjct: 421 GEAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLD 479
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L RL+R+ K A N L +++ +K TT +RFI+ALGIR VGE TA LAN+FK L+ +
Sbjct: 480 LTTLTRLERMGAKSAENALNSLENAKSTTLARFIFALGIREVGEATALNLANHFKTLDAL 539
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
A E+L +P +G F + + ++ L G++W
Sbjct: 540 KDANLEELQQVPDVGEVVANRIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKD 599
Query: 595 ----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L T+ G KV +S T++++ G G KL KA +LNI +L
Sbjct: 600 KTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVL 659
Query: 638 DEKNFV 643
E+ F+
Sbjct: 660 TEEEFL 665
>gi|163802586|ref|ZP_02196478.1| NAD-dependent DNA ligase LigA [Vibrio sp. AND4]
gi|159173669|gb|EDP58488.1| NAD-dependent DNA ligase LigA [Vibrio sp. AND4]
Length = 670
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 276/665 (41%), Positives = 400/665 (60%), Gaps = 36/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ ELK+ LH H + YY+ DNP I D +YD+++ EL IE ++P+L+T DS +Q VG
Sbjct: 8 QLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPDLVTVDSPSQRVGGQP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNI-EYIAELKFDGIAVNLRY 135
V H M+SLDN F D ++ F+KR + + + NI +Y E K DG+AV+L Y
Sbjct: 68 LSEFSQVTHEVPMLSLDNAFDDAELDGFHKRAQDRV-VAHNIKQYCCEPKLDGLAVSLLY 126
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
E G L QA+TRGDG GENIT N+ I IPL L + P LEVR EV + K F KLN
Sbjct: 127 ENGVLVQAATRGDGTTGENITENVRTISAIPLKLQGENWPTRLEVRGEVFMPKAGFDKLN 186
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
+ G K F NPRNAAAG LRQL+ +I ++ L F+A+ VG + G + +SH E
Sbjct: 187 ELARKKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVEGAVLANSHYERFLQ 246
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ GL +C E + + ++ +Y+ I ++R L YEIDGVV K++ + Q++LGF +R
Sbjct: 247 IKSWGLPMCPETRCVDNLEEVKAYYRDILVRREALAYEIDGVVIKVDDIVIQERLGFVAR 306
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A+AYKF ++E +T + + Q+GRTG ITPVA L+P+ + G+T++ ATLHN EI
Sbjct: 307 APRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHNADEIE 366
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
R + +GD VV+ R+G+VIP++ S I RP ++ PN CP+C S + IE + R
Sbjct: 367 RLQVMVGDQVVIRRAGDVIPQVVSVIKERRPETAREIIFPNACPVCGSHVERIEGEAVTR 426
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++ L
Sbjct: 427 CTGGLV-CQAQRKEALKHFVSRKALDVDGLGDKVIEQLVDREMVETPADLFKLSAGVLTV 485
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
LDR+ K A N++ A++KSKLTT RF+Y+LGIR VGE TA LA YFKNL+ + +ATEE
Sbjct: 486 LDRMGPKSATNVVNALEKSKLTTLPRFLYSLGIREVGEATAANLAQYFKNLDAIQQATEE 545
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNPNTK------------ 601
QL+++ IG K F ++ ++ ++ L GI W + +P
Sbjct: 546 QLVDVQDIGVVVAKHITTFFSEEKNQAVVQDLLAQGINWPDIASPQEGAERPLEGKTVVL 605
Query: 602 -------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ L G+ G KL KA +L I+I E++
Sbjct: 606 TGTLSQLGRSEAKEALQNLGAKVTGSVSKKTDILFAGENAGSKLTKAQELGIEIQTEQDL 665
Query: 643 VKIVK 647
+ ++K
Sbjct: 666 LNLMK 670
>gi|68057854|gb|AAX88107.1| DNA ligase [Haemophilus influenzae 86-028NP]
Length = 679
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 274/666 (41%), Positives = 396/666 (59%), Gaps = 34/666 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++ L+K L ++ Y++ DNP + D++YD+L +LK +E ++PE LT DS TQ
Sbjct: 10 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQ 69
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGI 129
VG + H M+SLDN FSD + F KRI + L L K + + E K DG+
Sbjct: 70 RVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLPKPLTFCCEPKLDGL 129
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G L QA+TRGDG GE+IT NI I +PL L PP LEVR EV +
Sbjct: 130 AVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHA 189
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LNKY K F NPRNAAAG LRQL+P I + L A+G+G G+++P++H
Sbjct: 190 GFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGIDLPTTH 249
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
+ L W + IG+ + E + +G ++++ FY+ I KR +L Y+IDG V KIN ++ Q +
Sbjct: 250 YDRLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIALQNE 309
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF S+APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 310 LGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 369
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R NI IGDTVV+ R+G+VIP+I + RP+++K P CP+C+S+II IE
Sbjct: 370 NGDEIERLNIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIE 429
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++
Sbjct: 430 GEAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLD 488
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L RL+R+ K A N L +++ +K TT RFI+ALGIR VGE TA LAN+FK L+ +
Sbjct: 489 LTTLTRLERMGAKSAENALNSLENAKSTTLDRFIFALGIREVGEATALNLANHFKTLDAL 548
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
A E+L +P +G F + + ++ L G++W
Sbjct: 549 KDANLEELQQVPDVGEVVANRIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKD 608
Query: 595 ----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L T+ G KV +S T++++ G G KL KA +LNI +L
Sbjct: 609 KTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDGAGSKLAKAQELNITVL 668
Query: 638 DEKNFV 643
E+ F+
Sbjct: 669 TEEEFL 674
>gi|260580185|ref|ZP_05848015.1| DNA ligase, NAD-dependent [Haemophilus influenzae RdAW]
gi|1574651|gb|AAC22753.1| DNA ligase (lig) [Haemophilus influenzae Rd KW20]
gi|260093469|gb|EEW77402.1| DNA ligase, NAD-dependent [Haemophilus influenzae RdAW]
Length = 679
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 274/666 (41%), Positives = 396/666 (59%), Gaps = 34/666 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++ L+K L ++ Y++ DNP + D++YD+L +LK +E ++PE LT DS TQ
Sbjct: 10 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQ 69
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGI 129
VG + H M+SLDN FSD + F KRI + L L K + + E K DG+
Sbjct: 70 RVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLPKPLTFCCEPKLDGL 129
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G L QA+TRGDG GE+IT NI I +PL L PP LEVR EV +
Sbjct: 130 AVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHA 189
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LNKY K F NPRNAAAG LRQL+P I + L A+G+G G+++P++H
Sbjct: 190 GFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDLPTTH 249
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
L W + IG+ + E + +G ++++ FY+ I KR +L Y+IDG V KIN ++ Q +
Sbjct: 250 YARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIALQNE 309
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF S+APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 310 LGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 369
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R NI IGDTVV+ R+G+VIP+I + RP+++K P CP+C+S+II IE
Sbjct: 370 NGDEIERLNIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIE 429
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++
Sbjct: 430 GEAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLD 488
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L RL+R+ K A N L +++ +K TT +RFI+ALGIR VGE TA LAN+FK L+ +
Sbjct: 489 LTTLTRLERMGAKSAENALNSLENAKSTTLARFIFALGIREVGEATALNLANHFKTLDAL 548
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
A E+L +P +G F + + ++ L G++W
Sbjct: 549 KDANLEELQQVPDVGEVVANRIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKD 608
Query: 595 ----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L T+ G KV +S T++++ G G KL KA +LNI +L
Sbjct: 609 KTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVL 668
Query: 638 DEKNFV 643
E+ F+
Sbjct: 669 TEEEFL 674
>gi|418530264|ref|ZP_13096190.1| DNA ligase, NAD-dependent [Comamonas testosteroni ATCC 11996]
gi|371452817|gb|EHN65843.1| DNA ligase, NAD-dependent [Comamonas testosteroni ATCC 11996]
Length = 708
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 266/676 (39%), Positives = 408/676 (60%), Gaps = 47/676 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
+ L+ +LH+ YY+ D P + D +YD++ +L+ +E YP L+T DS TQ V VG
Sbjct: 32 KAAALRGQLHQWAHEYYVLDAPTVPDGEYDRVYQQLEALEGAYPALVTPDSPTQRV--VG 89
Query: 77 G--ENSKYVHHTFKMMSLDNGFSDE--DVIIFNKRITNELKLTKN---IEYIAELKFDGI 129
+ V H M+S+ +E I F++R+ EL L ++ IEY+AE KFDG+
Sbjct: 90 AVLDGLTPVRHAVPMLSIQTETDNEATGAIAFDQRVRKELGLDESAAAIEYVAEPKFDGL 149
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-KYPPELLEVRCEVLIYK 188
A+NLRYE G L QA+TRGDG +GE++T NI I +IPL L+ + P ++EVR EV + K
Sbjct: 150 AMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRQIPLSLSAGRDVPPVVEVRGEVHMAK 209
Query: 189 KDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL----RGMN 244
D +LN + G K F NPRNAAAG +RQL+ I + L FFA+G+GE+ +G
Sbjct: 210 ADLDRLNARQQAAGAKTFANPRNAAAGSVRQLDSSIAAQRPLSFFAYGLGEITPPQQGGP 269
Query: 245 MPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCL 304
+H +L + G + + S+ G ++L+ F+++I +R NLPYEIDGVVYK+N L
Sbjct: 270 DFGTHYAMLQTLKSWGFPVAPQVSIARGASELVAFHERIGAERANLPYEIDGVVYKVNSL 329
Query: 305 STQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITIT 364
+ Q++LGF SR PR+A+A+K+ ++E T ++AI++Q+GRTG +TPVA L PV + G+ +T
Sbjct: 330 ALQRQLGFKSREPRWAVAHKYPAQEMPTLMEAIDVQVGRTGKLTPVARLAPVQVGGVVVT 389
Query: 365 RATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSK 424
ATL N +I +K +++GD V+V R+G+VIP++ + RP F++P CPIC S+
Sbjct: 390 NATLSNLFDIRKKGVRVGDQVIVRRAGDVIPEVVGRVPGERPAYVPNFRMPKSCPICGSE 449
Query: 425 IIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVD 484
++ + RC+G C AQRK + HF+ R+AM+I GLG K++++LV+A +V D
Sbjct: 450 VVREKGEANHRCTGGLF-CGAQRKEAILHFAHRRAMDIEGLGDKLVDQLVDAQVVRVLPD 508
Query: 485 LYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFK 544
LY++ +L LDR++ K A N+L A++KSK TT RF++ LGIR+VGE+TA++LA +F
Sbjct: 509 LYRLGLSSLAALDRMAEKSAQNVLAALEKSKSTTLQRFLFGLGIRNVGESTARDLAKHFG 568
Query: 545 NLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-LNNPNTK-- 601
L+ + A+ E+LL + +G + F QP +R ++ QLR G++W P K
Sbjct: 569 KLDAIMDASVEELLQVKDVGPVVADSIHTFFAQPHNREVVEQLRACGVHWDEGEPAEKAP 628
Query: 602 -----------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKL 632
G KV +SK T+Y+V G + G KL KA +L
Sbjct: 629 QILAGMTVVLTGTLPTLGRDAAKDMLEAAGAKVSGSVSKKTSYVVAGAEAGSKLAKAEEL 688
Query: 633 NIKILDEKNFVKIVKG 648
+ +LDE + +++G
Sbjct: 689 GVPVLDEAGMLALLRG 704
>gi|123441550|ref|YP_001005536.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|420259381|ref|ZP_14762090.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|166216254|sp|A1JLA4.1|DNLJ_YERE8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|122088511|emb|CAL11304.1| DNA ligase [Yersinia enterocolitica subsp. enterocolitica 8081]
gi|404513100|gb|EKA26926.1| NAD-dependent DNA ligase LigA [Yersinia enterocolitica subsp.
enterocolitica WA-314]
Length = 672
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 263/664 (39%), Positives = 395/664 (59%), Gaps = 36/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P I D +YD+L+ +L+++E ++PEL+T DS TQ VG
Sbjct: 7 QINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELITNDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SLDN F +E + F+KR+ + LK + + ELK DG+AV+L YE
Sbjct: 67 LDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRADPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT N+ I IPL L P +EVR EV + F +LN
Sbjct: 127 DGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVFMPLAGFEQLND 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SH + L +
Sbjct: 187 EARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHIQRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +G ++I FY+++ R L ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 KAWGLPVSERVKLCTGSEQVIAFYRQVEQDRGGLGFDIDGVVIKVDSLDLQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T+++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIP++ ++ RP D+K P CP+C S I +E +ARC
Sbjct: 367 LGLRIGDTVIVRRAGDVIPQVVGVVMDQRPQDAKEITFPEHCPVCGSDIERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SR+A+++ G+G K+IE+LV V DL+ + L L
Sbjct: 427 TGGLF-CAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFTLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N+++A++K+K TTF+RF+YALGIR VGE TA LA +F+NLE + A E
Sbjct: 486 DRMGPKSAQNLIVALEKAKQTTFARFLYALGIREVGEATAANLAAHFRNLENLRAADIEA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L ++P +G K + F+ + ++ +I L V I W +++P
Sbjct: 546 LKSVPDVGEVVAKHVVNFLGEEHNQKVIEALEKV-ITWPEPQQIIAEEIDSPFAGKTVVL 604
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 605 TGSLTILSRDEAKDRLAALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEM 664
Query: 643 VKIV 646
++++
Sbjct: 665 IRLL 668
>gi|238785571|ref|ZP_04629551.1| DNA ligase [Yersinia bercovieri ATCC 43970]
gi|238713506|gb|EEQ05538.1| DNA ligase [Yersinia bercovieri ATCC 43970]
Length = 670
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 259/664 (39%), Positives = 399/664 (60%), Gaps = 36/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P I D +YD+L+ +L+ +E ++PEL+T DS TQ VG
Sbjct: 7 QINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLESQHPELITSDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SLDN F +E + F+KR+ + LK T+ + + ELK DG+AV+L YE
Sbjct: 67 LDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRTEPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT N+ I IPL L+ P +EVR EV + + F +LN
Sbjct: 127 DGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNIPRRVEVRGEVFMPQAGFEQLND 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SH + L +
Sbjct: 187 EARRKGGKVFANPRNAAAGSLRQLDPRITAKRRLAFFCYGVGLLDGGELPRSHIQRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +G ++I FY+++ R L ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 KAWGLPVSNRVQLCTGSEQVIAFYRQVEQDRAGLGFDIDGVVIKVDDLDLQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T+++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIP++ ++ RP D+K P CP+C S I +E +ARC
Sbjct: 367 LGLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAKEITFPEHCPVCGSDIERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SR+A+++ G+G K+IE+LV V DL+++ L L
Sbjct: 427 TGGLF-CAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFELTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N+++A++++K TTF+RF+YALGIR VGE TA LA +F+N+ + A ++
Sbjct: 486 DRMGPKSAQNLIVALERAKQTTFARFLYALGIREVGEATAANLAAHFRNMANLRAADIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L ++P +G K + F+ + ++ +I L V I W +++P
Sbjct: 546 LKSVPDVGEVVAKHVLNFLGEEHNQRVIEALEKV-ISWPEPQQIIAEEIDSPFAGKTVVL 604
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +S+ T+ ++ G+ G KL KA +L I ++DE
Sbjct: 605 TGSLTILSRDEAKDRLTALGAKVSGSVSRKTDLVIAGEAAGSKLVKAQELGITVIDEAEM 664
Query: 643 VKIV 646
++++
Sbjct: 665 IRLL 668
>gi|27363688|ref|NP_759216.1| NAD-dependent DNA ligase LigA [Vibrio vulnificus CMCP6]
gi|81449211|sp|Q8DFK5.1|DNLJ_VIBVU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|27359804|gb|AAO08743.1| DNA ligase, NAD-dependent [Vibrio vulnificus CMCP6]
Length = 669
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 275/660 (41%), Positives = 395/660 (59%), Gaps = 34/660 (5%)
Query: 20 ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGEN 79
ELK++LH H + YY+ DNP I D +YD+++ EL IE ++PE ++ DS +Q VG V ++
Sbjct: 11 ELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWISVDSPSQRVGGVALDS 70
Query: 80 SKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGY 139
+ V H M+SLDN FSDE++ F KR + + + E K DG+AV+L YE G
Sbjct: 71 FRQVTHEIPMLSLDNAFSDEELESFLKRAQDRMPSAHIDAFCCEPKLDGLAVSLLYENGV 130
Query: 140 LKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRY 199
L QA+TRGDG GENIT N+ I +PL L + P +EVR EV + K F KLN
Sbjct: 131 LVQAATRGDGTTGENITENVRTIASVPLKLQGEGWPSRIEVRGEVFMPKAGFEKLNDIAR 190
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKI 259
G K F NPRNAAAG LRQL+ KI + L F+A+ VG + G+++ SSH + ++
Sbjct: 191 KKGEKVFVNPRNAAAGSLRQLDSKITATRPLAFYAYSVGVVEGISLSSSHYQRFLQLKQW 250
Query: 260 GLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRF 319
GL +C E +++G+ + FY I +R LPYEIDGVV KI+ + Q+KLGF +RAPR+
Sbjct: 251 GLPMCPETKLVNGLESVKAFYADILNRRDALPYEIDGVVIKIDDIVIQEKLGFVARAPRW 310
Query: 320 ALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNI 379
A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R +
Sbjct: 311 AIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIERLGV 370
Query: 380 QIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGS 439
+GDTVV+ R+G+VIP+I S + R D K P CP+C+S + IE + RCSG
Sbjct: 371 MVGDTVVIRRAGDVIPQIVSVVKDRRKGDEKNIIFPTACPVCHSHVERIEGEAVTRCSGG 430
Query: 440 WIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRV 499
+ C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+ ++ L L+R+
Sbjct: 431 LV-CQAQRKEALKHFVSRKALDVDGLGDKVIEQLVDKEMVETPADLFTLSAGVLTVLERM 489
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
K A NI+ A+ +K TT +RF+Y+LGIR VGE TA LA +FK LE + AT EQL+
Sbjct: 490 GPKSAQNIVNALNVAKETTLARFLYSLGIREVGEATAANLARHFKTLEAIQTATHEQLIE 549
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------- 594
+P IG + F + ++ ++ L + GI W
Sbjct: 550 VPDIGEVVARHITAFFAEEKNQRVVQALIEQGIVWPAVEELGSEIPQPLAGKVVVLTGTL 609
Query: 595 --LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
L+ + K G KV +SK T+ + G+ G KL KA +L ++I E++ + ++
Sbjct: 610 TQLSRGDAKAALERLGAKVTGSVSKKTDIVFAGEAAGSKLTKAQELGVEIQTEQDLLALL 669
>gi|16761347|ref|NP_456964.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|81513487|sp|Q8Z4W4.1|DNLJ_SALTI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|25294013|pir||AI0809 DNA ligase (NAD) (EC 6.5.1.2) - Salmonella enterica subsp. enterica
serovar Typhi (strain CT18)
gi|16503646|emb|CAD07659.1| DNA ligase [Salmonella enterica subsp. enterica serovar Typhi]
Length = 671
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 264/664 (39%), Positives = 398/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEILDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQTGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|388598359|ref|ZP_10156755.1| NAD-dependent DNA ligase LigA [Vibrio campbellii DS40M4]
Length = 670
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 276/664 (41%), Positives = 394/664 (59%), Gaps = 34/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ ELK+ LH H + YY+ DNP I D +YD+++ EL IE ++PEL+T DS +Q VG
Sbjct: 8 RLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPELVTVDSPSQRVGGQP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F D ++ F+KR + + +Y E K DG+AV+L YE
Sbjct: 68 LSEFSQVTHEVPMLSLDNAFDDAELDGFHKRAQDRVVGHTIKQYCCEPKLDGLAVSLLYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I IPL L K P LEVR EV + K F KLN+
Sbjct: 128 NGVLVQAATRGDGTTGENITENVRTISAIPLKLQGKDWPTRLEVRGEVFMPKAGFDKLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I ++ L F+A+ VG + G + +SH E
Sbjct: 188 NARKKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVEGATLANSHYERFLQI 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL +C E + + ++ +Y+ I +R L YEIDGVV K++ ++ Q++LGF +RA
Sbjct: 248 KSWGLPMCPETKRVDSLEEVKAYYQDILTRREALAYEIDGVVIKVDDIAIQERLGFVARA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+P+ + G+T++ ATLHN EI R
Sbjct: 308 PRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHNADEIER 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
+ +GD VV+ R+G+VIP++ S I RP ++ P+ CP+C S + IE + RC
Sbjct: 368 LQVMVGDQVVIRRAGDVIPQVVSVIKERRPETAREILFPDACPVCGSHVERIEGEAVTRC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++ L L
Sbjct: 428 TGGLV-CQAQRKEALKHFVSRKALDVDGLGDKVIEQLVDREMVETPADLFKLSAGVLTVL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++KSKLTT RF+Y+LGIR VGE TA LA YFKNL+ + +ATEEQ
Sbjct: 487 ERMGPKSATNVVNALEKSKLTTLPRFLYSLGIREVGEATAANLAQYFKNLDAIQQATEEQ 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L+ + IG K F + ++ ++ L GI W
Sbjct: 547 LIEVQDIGVIVAKHITTFFGEEKNQAVVQDLLTQGINWPEIAAPQEGVELPLEGKTVVLT 606
Query: 595 -----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
L K G KV +SK T+ L G+ G KL KA +L I+I E++ +
Sbjct: 607 GTLSQLGRSEAKEALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQTEQDLL 666
Query: 644 KIVK 647
++K
Sbjct: 667 NLMK 670
>gi|383816759|ref|ZP_09972150.1| NAD-dependent DNA ligase LigA [Serratia sp. M24T3]
gi|383294378|gb|EIC82721.1| NAD-dependent DNA ligase LigA [Serratia sp. M24T3]
Length = 674
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 259/664 (39%), Positives = 398/664 (59%), Gaps = 36/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ +L H Y++ D P + D +YD+L+ +L+++EEK P+L+T DS TQ VG
Sbjct: 7 QIDDLRTKLRHHEYQYHVLDAPEVPDAEYDRLMRDLRELEEKNPDLVTPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F +E + F KR+ + LK++ + + ELK DG+AV+L YE
Sbjct: 67 LSAFDQVRHQVPMLSLDNVFDEESFLAFYKRVKDRLKVSTELTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I IPL L P LEVR EV + + F LN+
Sbjct: 127 NGELVQAATRGDGTTGENITMNVRTIRAIPLRLTGDNIPARLEVRGEVFMPQPGFEALNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SH + L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGALEGGTLPASHFQRLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + V +G ++++ FY+++ R +L ++IDGVV KI+ L TQ+ LGF +RA
Sbjct: 247 KAWGLPVSERVKVCTGSSEVLAFYRQVEQDRVHLGFDIDGVVVKIDSLETQETLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T +K + Q+GRTG ITPVA L+PVL+ G+ ++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQITLVKDVEFQVGRTGAITPVARLEPVLVAGVMVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIP++ I RP D++ P CP+C+S + +E +ARC
Sbjct: 367 LGLRIGDTVIVRRAGDVIPQVVGVIEDQRPEDAREVVFPTQCPVCHSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SR+A+++ G+G K+I++LV V DL+++ + L
Sbjct: 427 TGGLF-CGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVKNPADLFRLTAGIMTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N+ A++KS+ TTF+RF+YALGIR VGE TA LA +++ ++ + +A E
Sbjct: 486 DRMGPKSAQNLAAALEKSRDTTFARFLYALGIREVGEATAANLAAHYRTIDALREADVES 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L + +G K + F+ + ++ +I L + + W +++P
Sbjct: 546 LKKVQDVGDVVAKHVVNFLGEDHNKEVIDDLLNF-VRWPAPQVIVAEEIDSPFAGKVLVL 604
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA++L I ++DE+
Sbjct: 605 TGSLSILSRDEAKDRLTALGAKVTGSVSKKTDMVIAGEAAGSKLAKALELGIPVIDEEEM 664
Query: 643 VKIV 646
++++
Sbjct: 665 IRLL 668
>gi|350530575|ref|ZP_08909516.1| NAD-dependent DNA ligase LigA [Vibrio rotiferianus DAT722]
Length = 670
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 275/664 (41%), Positives = 395/664 (59%), Gaps = 34/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ ELK+ LH H + YY+ DNP I D +YD+++ EL IE ++P L+T DS +Q VG
Sbjct: 8 RLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPGLVTVDSPSQRVGGQP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F D ++ F+KR + + +Y E K DG+AV+L YE
Sbjct: 68 LSEFSQVAHEVPMLSLDNAFDDAELDGFHKRAQDRVVGHSIKQYCCEPKLDGLAVSLLYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I IPL L P LEVR EV + K F KLN+
Sbjct: 128 NGVLVQAATRGDGTTGENITENVRTISAIPLRLQGNDWPARLEVRGEVFMPKAGFDKLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I ++ L F+A+ VG + G + +SH E
Sbjct: 188 IARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVEGATLANSHYERFLQI 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL +C E + + ++ +Y+ I +R L YEIDGVV K++ ++ Q++LGF +RA
Sbjct: 248 KSWGLPMCPETKRVDNLEEVKAYYQDILTRREALAYEIDGVVIKVDDIAIQEQLGFVARA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 308 PRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIER 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
+ +GD VV+ R+G+VIP++ S I RP ++ PN CP+C S + IE + RC
Sbjct: 368 LQVMVGDQVVIRRAGDVIPQVVSVIKERRPETAREIIFPNACPVCGSHVERIEGEAVTRC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++ L L
Sbjct: 428 TGGLV-CQAQRKEALKHFVSRKALDVDGLGDKVIEQLVDREMVETPADLFKLSAGVLTVL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A+++SKLTT RF+Y+LGIR VGE TA LA YFKNL+ + +ATEEQ
Sbjct: 487 ERMGPKSATNVVNALERSKLTTLPRFLYSLGIREVGEATAANLAQYFKNLDAIQQATEEQ 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L+ + IG K F ++ +++++ L GI+W
Sbjct: 547 LIEVQDIGVIVAKHITTFFSEEKNQVVVQDLLAQGIHWPEIAAPQEGVELPLEGKTVVLT 606
Query: 595 -----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
L K G KV +SK T+ L G+ G KL KA +L I+I E++ +
Sbjct: 607 GTLSQLGRSEAKEALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQTEQDLL 666
Query: 644 KIVK 647
++K
Sbjct: 667 NLMK 670
>gi|320540519|ref|ZP_08040169.1| DNA ligase, NAD(+)-dependent [Serratia symbiotica str. Tucson]
gi|320029450|gb|EFW11479.1| DNA ligase, NAD(+)-dependent [Serratia symbiotica str. Tucson]
Length = 685
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 265/667 (39%), Positives = 400/667 (59%), Gaps = 37/667 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P + D +YD+L+ EL+++E +PEL+T DS TQ VG
Sbjct: 7 QINQLRASLRHHEYQYHVLDAPEVPDAEYDRLMCELRELESAHPELITADSPTQRVGAAL 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F +E + F KR+ LK++ + + ELK DG+AV+L YE
Sbjct: 67 LAAFDQVRHELLMLSLDNVFDEESFLAFYKRVQERLKISDPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT+N+ I IPL L P LEVR EV + + F ++N
Sbjct: 127 DGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGANIPRRLEVRGEVFMPQAGFEQMNT 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
K F NPRNAAAG +RQL+P+I N+ L FF +GVG L G +P SH E L +
Sbjct: 187 EARRKNGKIFANPRNAAAGSIRQLDPRITANRPLTFFCYGVGLLEGGELPRSHFERLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + +G ++++ FY ++ R L ++IDGVV KI+ + Q+KLGF +RA
Sbjct: 247 RAWGLPVNDGARCCTGSDEVLAFYHQVEQDRAQLGFDIDGVVVKIDDIDLQEKLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T ++ I Q+GRTG ITPVA L+PVL+ G+T++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQITLVREIEFQVGRTGAITPVARLEPVLVAGVTVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIPK+ + RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDTVIVRRAGDVIPKVVGVLEDRRPQDTRAVVFPQHCPVCGSDVERLEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+IE+LV V DL++++ L L
Sbjct: 427 TGGLI-CAAQRKEALKHFVSRRAMDVDGMGDKIIEQLVEKEYVKNPADLFRLSANMLSGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++KS+ TTF+RF+YALGIR VGE TA LA +F +LE ++ A
Sbjct: 486 DRMGPKSAQNLVNALEKSRQTTFARFLYALGIREVGEATAANLAAHFGSLEKLYAADIAA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL--RDVGIYW-------------------- 594
L +P +G + F+++ L++ +I++L ++GI W
Sbjct: 546 LKEVPDVGEVVAQHTRHFLDEALNQKVIAELVSVEIGINWPVPVVVATEEIDSPFAGKTV 605
Query: 595 --------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
L+ + K G K+ +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 VLTGSLSQLSRDDAKDRLKVLGAKISGSVSKKTDLVIAGEAAGSKLVKAQELGIEVIDEA 665
Query: 641 NFVKIVK 647
+++++
Sbjct: 666 ELLRLIE 672
>gi|33151983|ref|NP_873336.1| NAD-dependent DNA ligase LigA [Haemophilus ducreyi 35000HP]
gi|81423646|sp|Q7VMX7.1|DNLJ_HAEDU RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|33148205|gb|AAP95725.1| DNA ligase [Haemophilus ducreyi 35000HP]
Length = 686
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 275/667 (41%), Positives = 401/667 (60%), Gaps = 36/667 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+ +L + Y++ +NP++ D +YD+L+ +LK IE++YPEL+T DS TQ VG
Sbjct: 21 LRDQLREYEYHYHVLNNPLVPDAEYDRLINQLKNIEQQYPELITPDSPTQRVGAKPLAGF 80
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN-IEYIAELKFDGIAVNLRYEYGY 139
V H M+SLDN FS+ D+ F +RI N L L N + + E K DG+AV++ Y G
Sbjct: 81 AQVAHEMPMLSLDNAFSETDLDNFLRRIENYLSLDANQLTFCCEPKLDGLAVSILYIDGV 140
Query: 140 LKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRY 199
L+ A+TRGDG GENIT N+ I IPL L + PP LE+R E+ + K F LN+
Sbjct: 141 LQLAATRGDGTTGENITANVRTIRNIPLKLKMANPPHRLEIRGEIFMPLKGFNALNQRAL 200
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPSSHSELLNWYQ 257
G K F NPRNAAAG LRQL+P+I + + L A+G+G E +P+SH L W +
Sbjct: 201 AKGEKSFANPRNAAAGSLRQLDPQITRQRPLMLNAYGIGVYESNYQRLPTSHYARLEWLK 260
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
IG+ + E + G +L+ FY I KR +L Y+IDG V K++ ++ Q+ LGF SR+P
Sbjct: 261 SIGIPVNAEIRLARGYPQLLAFYADIQAKRADLGYDIDGTVLKVDDITIQETLGFISRSP 320
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+AYKF ++E +T +K + Q+GRTG ITPVA L+P L+ G+T++ ATLHN EI R
Sbjct: 321 RWAIAYKFPAQEEMTILKDVEFQVGRTGAITPVAKLEPTLVAGVTVSNATLHNGDEIERL 380
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
+ IGDTV++ R+G+VIP+I + RP ++K P CP+C+S +I I +ARC+
Sbjct: 381 GVAIGDTVIIRRAGDVIPQIIGIVADRRPANAKKIVFPTACPVCHSAVIRIAGEAVARCT 440
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G C AQRK L+HF SRKAMNI G+G+K+IE+L+ ++ T DL+K++ +L+RL+
Sbjct: 441 GGLF-CPAQRKEALKHFVSRKAMNIDGVGEKLIEQLMARELIHTPADLFKLDPLSLMRLE 499
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+ K A N L +I+K+K TT +RF+++LGIR VGETTA LAN+F +LE + A EQL
Sbjct: 500 RMGEKSAQNALNSIEKAKHTTLARFLFSLGIRDVGETTALNLANHFGSLENIRTANVEQL 559
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--------NP----------- 598
+ +G + F + + ++ +L G++W N NP
Sbjct: 560 KEVQDVGEVVANRLVCFWQEQHNVAVVEELIAQGVHWDNIVQLEIADNPLKDKNVVLTGT 619
Query: 599 -------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
G KV + +S T++L+ G+K G KL KA +L I+ILDE F +
Sbjct: 620 LTQFSRDQARKLLQQLGCKVSSAVSTKTDFLIAGEKAGTKLTKAEQLGIRILDEHAFADL 679
Query: 646 VKGFSTE 652
+K E
Sbjct: 680 IKQLEYE 686
>gi|416273211|ref|ZP_11643348.1| DNA ligase [Shigella dysenteriae CDC 74-1112]
gi|320173862|gb|EFW49042.1| DNA ligase [Shigella dysenteriae CDC 74-1112]
Length = 671
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 401/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+ EL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHLELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF L+ + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLKALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +IS+L G++W +++P
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|418790958|ref|ZP_13346727.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|418793289|ref|ZP_13349022.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|418799952|ref|ZP_13355616.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|392756994|gb|EJA13888.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|392762582|gb|EJA19396.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|392765160|gb|EJA21949.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
Length = 671
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 263/664 (39%), Positives = 395/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY + R L ++IDGVV K+N L+ Q+ LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQELLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQTATIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVL 605
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLAALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|452124100|ref|ZP_21936684.1| DNA ligase [Bordetella holmesii F627]
gi|452127485|ref|ZP_21940066.1| DNA ligase [Bordetella holmesii H558]
gi|451923330|gb|EMD73471.1| DNA ligase [Bordetella holmesii F627]
gi|451926765|gb|EMD76895.1| DNA ligase [Bordetella holmesii H558]
Length = 694
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 279/675 (41%), Positives = 400/675 (59%), Gaps = 59/675 (8%)
Query: 25 LHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVH 84
+ +HN+ YY+YD P ISD +YD L+ EL +E +PEL+T DS TQ VG V
Sbjct: 16 IAQHNVRYYVYDEPAISDAEYDALMRELTALETAHPELITPDSPTQRVGAAPLAEFGSVQ 75
Query: 85 HTFKMMSLDNGFSDEDVIIFNKRITNELK---LTKNIE---YIAELKFDGIAVNLRYEYG 138
H M+SL NGF DEDV F+KR+ + L+ L E Y ELK DG+A++LRYE G
Sbjct: 76 HAMPMLSLGNGFEDEDVHAFDKRVCDTLRGAGLLGQAEPAGYFCELKLDGLAISLRYENG 135
Query: 139 YLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYR 198
L QA+TRGDG GE++T NI I+ IPL L + P +LEVR EVL+ + +F KLN+ +
Sbjct: 136 ELVQAATRGDGQTGEDVTANIRTINAIPLKLKGQVP-AVLEVRGEVLMNRAEFEKLNQKQ 194
Query: 199 YHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM--------------- 243
G K F NPRNAAAG LRQL+P++ + L FFA+ GE++G+
Sbjct: 195 AARGEKVFVNPRNAAAGSLRQLDPRVTAQRPLRFFAYSWGEVQGLPTGVSDAFDETAPGT 254
Query: 244 ----NMP-SSHSELLNWYQKIGLSICGEYS-VLSGVNKLIEFYKKINIKRFNLPYEIDGV 297
+P +H +L W +GL + ++ G + L+ FY++I +R LPY+IDGV
Sbjct: 255 GVASTLPRDTHGGMLEWLADLGLPVNVRFNHKAQGADGLLAFYRRIGSERAGLPYDIDGV 314
Query: 298 VYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVL 357
VYK++ L Q+ LGF +RAPR+ALA+KF ++EA T + I +Q+GRTG ITPVA LKPV
Sbjct: 315 VYKVDALPAQRVLGFVARAPRWALAHKFPAEEASTDLLGIEVQVGRTGAITPVARLKPVF 374
Query: 358 IDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNI 417
+ G+T+T ATLHNE EI RK++++GD VVV R+G+VIP++ +L R + +F +P
Sbjct: 375 VGGVTVTNATLHNEDEIRRKDVRVGDVVVVRRAGDVIPEVVGPVLEKRSAELPLFVMPTH 434
Query: 418 CPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNAN 477
CPIC S + +E IARC+G C AQRK L H + RKA++I GLG K++E+LV+
Sbjct: 435 CPICGSAVERLEDETIARCTGGLF-CPAQRKQTLVHAAGRKALDIEGLGDKLVEQLVDNG 493
Query: 478 IVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAK 537
+ T D++ ++ L LDR+ K A N++ AI +++ + R ++ALGIRHVGETTA+
Sbjct: 494 RLKTLADVFTLDAFELAALDRMGKKSAENLVAAIDQARRPSLGRLLFALGIRHVGETTAR 553
Query: 538 ELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIY---- 593
++A +F N+ + A EE LL +P +G + +F +P +R ++ QL G+
Sbjct: 554 DVARHFGNISRIMDADEEALLAVPDVGPVVAGSIHRFFREPHNREVVHQLEQRGVQPQAE 613
Query: 594 ---------------------WLNNPNTK-----GGKVVNFISKNTNYLVKGQKPGKKLE 627
W + + GGKV +SK T Y+V G+ G KL
Sbjct: 614 AQAQGGSLTGKTFVLTGTMPTWSRDEAARHILAAGGKVSGSVSKKTAYVVAGEDAGSKLV 673
Query: 628 KAIKLNIKILDEKNF 642
KA +L + IL E
Sbjct: 674 KAQELGLTILGEDGL 688
>gi|254448715|ref|ZP_05062173.1| DNA ligase, NAD-dependent [gamma proteobacterium HTCC5015]
gi|198261723|gb|EDY86010.1| DNA ligase, NAD-dependent [gamma proteobacterium HTCC5015]
Length = 673
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 260/663 (39%), Positives = 396/663 (59%), Gaps = 35/663 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ L+++LH+H AYY+ D P I D +YD+L EL+ +E +YPE + DS TQ VG
Sbjct: 11 IDSLREQLHQHAHAYYVLDEPSIPDAEYDRLFRELQSLEAQYPESHSDDSPTQRVGAAPL 70
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
+ V H M+SL N FSD++++ F++R+ L +EY AE K DG+A++L YE
Sbjct: 71 DAFVSVEHEVPMLSLGNVFSDDELVAFDQRLRERLDYPSELEYAAEPKLDGLAISLLYED 130
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYP-PELLEVRCEVLIYKKDFIKLNK 196
G L + +TRGDG++GE++T NI IH IPL L + P+ LEVR EV + K F +N
Sbjct: 131 GVLVRGATRGDGSVGEDVTQNIKTIHSIPLRLPKRGDWPKRLEVRGEVYMPKAGFEAMNA 190
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I ++ L + + VG G +P++HSE L
Sbjct: 191 KAREQGDKVFANPRNAAAGSLRQLDSRIAASRPLDMYCYSVGVFEG-ELPATHSETLAML 249
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ G IC E +V++G + E+Y++I R LPYEIDGVVYK+N L Q LGF +RA
Sbjct: 250 GRWGFRICPESAVVTGASGCAEYYQQIGRARDTLPYEIDGVVYKVNSLKLQGDLGFVARA 309
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF E LT ++ + Q+GRTG +TPVA L+PV + G+ ++ ATLHN E+ R
Sbjct: 310 PRWATAHKFPPSEELTVLQDVEFQVGRTGALTPVARLEPVNVAGVVVSNATLHNMDEVKR 369
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+++IGDTV+V R+G+VIP++ S+L RP ++ +P+ CP+C S +I E +ARC
Sbjct: 370 KDVRIGDTVIVRRAGDVIPEVVKSVLERRPKEAPAIVMPSHCPVCGSDVIRPEGEAVARC 429
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG + C AQR+ ++HF+SRKA++I G+G K+I++LV+ ++ DL+ + + L L
Sbjct: 430 SGG-LYCSAQRREAIKHFASRKALDIDGVGDKLIDQLVDGELIDHVDDLFHLTVEQLASL 488
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A + A++ +K TT +F++ALGIR VGE TA+ LA +F +LE + +A+E+
Sbjct: 489 ERMGEKSATKAIEALENAKRTTLPKFLFALGIREVGEVTARNLAMHFGDLEPIMQASEDD 548
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
LL + +G F QP + +I +L + G W
Sbjct: 549 LLAVADVGPIVAAHVKSFFEQPHNIEVIDKLLEAGFVWEPIEVAEQKEAVLDGHTYVLTG 608
Query: 595 ----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
+ K G KV +SK T + G PG K++KA +L + + E++ ++
Sbjct: 609 TFTAMKRDEAKQQLLALGAKVSGSVSKKTTAVFAGDSPGSKVDKAAELEVPVKTEEDLLE 668
Query: 645 IVK 647
++K
Sbjct: 669 LLK 671
>gi|429097287|ref|ZP_19159393.1| DNA ligase [Cronobacter dublinensis 582]
gi|426283627|emb|CCJ85506.1| DNA ligase [Cronobacter dublinensis 582]
Length = 672
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 263/665 (39%), Positives = 391/665 (58%), Gaps = 36/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++T+L+ L H Y++ D P + D +YD+L+ EL+ +EE +PEL+T DS TQ VG
Sbjct: 7 KLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELVTPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F + + FNKR+ + LK T + Y ELK DG+AV+L YE
Sbjct: 67 LTEFSQVRHEVPMLSLDNVFDEASFLAFNKRVKDRLKSTDALVYCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+IT N+ I IPL L P LEVR EV + + F K+N
Sbjct: 127 NGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLRGDNIPARLEVRGEVFLPQAGFEKIND 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P++ + L FF +GVG L G +P SH L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGELPRSHMGRLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ ++ FY ++ R L ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 KDWGLPVSDRIRLVETPEDVLAFYHQVEADRPTLGFDIDGVVIKVDSLELQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVVFPAQCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++ +K TTF+RF+YALGIR VGE TA LA +F LE + A+ +
Sbjct: 486 DRMGPKSAQNVVNALENAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALINASIDD 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW----------LNNP------- 598
L N+P +G F + +R +I L +VGI+W +++P
Sbjct: 546 LQNVPDVGIVVATHVFNFFEEESNRAVIRDLTENVGIHWPAPQVVKAEEIDSPFAGKTVV 605
Query: 599 -----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G KV +SK T+ L+ G+ G KL KA +L I+++DE
Sbjct: 606 LTGTLSQMSRDDAKARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAE 665
Query: 642 FVKIV 646
++++
Sbjct: 666 MLRLL 670
>gi|383189083|ref|YP_005199211.1| NAD-dependent DNA ligase [Rahnella aquatilis CIP 78.65 = ATCC
33071]
gi|371587341|gb|AEX51071.1| DNA ligase, NAD-dependent [Rahnella aquatilis CIP 78.65 = ATCC
33071]
Length = 673
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 259/672 (38%), Positives = 401/672 (59%), Gaps = 37/672 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++ +L+ +L H Y++ D P + D +YD+L+ EL+++E +PEL+T DS TQ
Sbjct: 1 MATIEEQINQLRTQLRHHEYQYHVLDAPEVPDAEYDRLMRELRELETTHPELVTADSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + V H M+SLDN F +E + F KR+ + LK + + + ELK DG+A
Sbjct: 61 RVGAAPLSAFEQVRHRVPMLSLDNVFDEESYLAFYKRVQDRLKTAEPLTFCCELKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L QA+TRGDG GENIT N+ I IPL L+ P LEVR EV + +
Sbjct: 121 VSLLYENGELVQAATRGDGTTGENITANVRTIRAIPLRLHGDNIPARLEVRGEVFMPQPG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F +N G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SH
Sbjct: 181 FEAMNAEARRTGGKVFANPRNAAAGSLRQLDPRITARRPLTFFCYGVGLLEGGELPRSHL 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
L ++ GL + + +G +++ FY+++ R +L ++IDGVV KI+ L Q+ L
Sbjct: 241 GRLQQFKAWGLPVSDRVRLCTGSEEVLAFYRQVEADRSSLGFDIDGVVVKIDSLDIQETL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A A+KF ++E +T++K + Q+GRTG ITPVA L+PVL+ G+ ++ ATLHN
Sbjct: 301 GFVARAPRWATAFKFPAQEQITRVKDVEFQVGRTGAITPVARLEPVLVAGVMVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R ++IGDTV+V R+G+VIP++ +L RP D++ P CP+C+S + +E
Sbjct: 361 ADEIERLGLRIGDTVIVRRAGDVIPQVVGVVLDERPQDAREVVFPTHCPVCHSDVERVEG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+ I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++
Sbjct: 421 EAVARCTAGLI-CGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVKTPADLFRLTA 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L LDR+ K A N++ A++K+K TT +RF+YALGIR VGE TA LA ++ ++E +
Sbjct: 480 GKLTGLDRMGPKSAQNVVSALEKAKETTLARFLYALGIREVGEATAANLAAHYGSVEALK 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQL--RDVGIYW----------LNNP 598
A E L ++ +G K + F+++ ++ +I +L ++ I+W +++P
Sbjct: 540 AADIESLKSVQDVGDVVAKHVVNFLSEEHNQQVIDELLSPEINIHWPQVQVIVPEEIDSP 599
Query: 599 ------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNI 634
G KV +SK T+ ++ G+ G KL KA +L I
Sbjct: 600 FAGKTVVLTGSLTILSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGI 659
Query: 635 KILDEKNFVKIV 646
+++DE ++++
Sbjct: 660 EVIDEAEMIRLL 671
>gi|392548965|ref|ZP_10296102.1| NAD-dependent DNA ligase [Pseudoalteromonas rubra ATCC 29570]
Length = 673
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 260/665 (39%), Positives = 400/665 (60%), Gaps = 33/665 (4%)
Query: 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG 73
+S ++ EL+++L +N YY+ D P + D +YD+++ L ++E ++P+ +T DS +Q VG
Sbjct: 5 ISKQIKELRQQLEVYNYQYYVLDQPTVPDAEYDRVMRALIELETQHPDYVTPDSPSQKVG 64
Query: 74 LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNL 133
+ V H M+SLDN F + + FN+RI L +++ E K DG+AV++
Sbjct: 65 GAALSKFEQVTHQVPMLSLDNAFDEAEFTAFNRRIKERLLHNAELDFCCEPKLDGLAVSI 124
Query: 134 RYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIK 193
Y G L QA+TRGDG +GENIT N+ I IPL L P LEVR EV + K F +
Sbjct: 125 LYRNGVLVQAATRGDGQVGENITENVKTIRNIPLRLRGDDIPAELEVRGEVFMDKAGFAR 184
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253
LN+ K F NPRNAAAG LRQL+PKI + L F+A+ +G ++G + +H L
Sbjct: 185 LNETAAQRDEKTFANPRNAAAGSLRQLDPKITAKRPLMFYAYSMGVVQGAELADTHYAQL 244
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
++ GL +C + ++G + ++Y+ I +R LPYEIDGVV K++ Q++LGF
Sbjct: 245 QQLKEWGLPMCPQTKRVTGASAAYQYYEAIMTERDALPYEIDGVVIKVDHKPFQEQLGFV 304
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
+RAPR+A+A+KF ++E LT++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN E
Sbjct: 305 ARAPRWAIAFKFPAQEELTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNRDE 364
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
I R +++GDTV++ R+G+VIP+IT +L RP D++ P CP+C+S + +E +
Sbjct: 365 IERLGVKVGDTVIIRRAGDVIPQITQVVLDKRPADAREITFPATCPVCDSHVERVEGEAV 424
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
ARC+G + C AQRK ++HFSSRKA++I GLG K++E+LV ++ T +L+ + +
Sbjct: 425 ARCTGGLV-CRAQRKEAIKHFSSRKALDIDGLGDKIVEQLVERELITTPAELFTLRQGHF 483
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
L+R+ K A N++ A+Q +K TT ++F+YALGIR VGE TA+ LAN++ LE + A+
Sbjct: 484 ESLERMGPKSAKNLVAALQAAKQTTLAKFMYALGIREVGEATAQNLANHYLTLENVMNAS 543
Query: 554 EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------- 594
E L + +G + F ++P ++ ++S L + G++W
Sbjct: 544 IESLQEVSDVGVVVAQHIHAFFSEPHNQKVVSDLLEQGLHWPEIAAKEESEQPLAGLTYV 603
Query: 595 -------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
LN + K G KV +SKNT+ LV G+K G KL KA L I ILDE
Sbjct: 604 LTGTLSQLNRNDAKARLQALGAKVSGSVSKNTHALVAGEKAGSKLTKAQDLGIDILDEAA 663
Query: 642 FVKIV 646
+ ++
Sbjct: 664 LIALL 668
>gi|423141062|ref|ZP_17128700.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. houtenae str.
ATCC BAA-1581]
gi|379053616|gb|EHY71507.1| DNA ligase, NAD-dependent [Salmonella enterica subsp. houtenae str.
ATCC BAA-1581]
Length = 671
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 263/664 (39%), Positives = 397/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDNVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYHNVEEDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAASIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|429093254|ref|ZP_19155855.1| DNA ligase [Cronobacter dublinensis 1210]
gi|426741887|emb|CCJ81968.1| DNA ligase [Cronobacter dublinensis 1210]
Length = 672
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 263/665 (39%), Positives = 391/665 (58%), Gaps = 36/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++T+L+ L H Y++ D P + D +YD+L+ EL+ +EE +PEL+T DS TQ VG
Sbjct: 7 KLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRALEEAHPELVTPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F + + FNKR+ + LK T + Y ELK DG+AV+L YE
Sbjct: 67 LTEFSQVRHEVPMLSLDNVFDEASFLAFNKRVKDRLKSTDALVYCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+IT N+ I IPL L P LEVR EV + + F K+N
Sbjct: 127 NGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLRGDNIPARLEVRGEVFLPQAGFEKIND 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P++ + L FF +GVG L G +P SH L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGELPRSHMGRLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ ++ FY ++ R L ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 KDWGLPVSDRIRLVETPEDVLAFYHQVEADRPTLGFDIDGVVIKVDSLELQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEISR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVVFPAQCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++ +K TTF+RF+YALGIR VGE TA LA +F LE + A+ +
Sbjct: 486 DRMGPKSAQNVVNALENAKETTFARFLYALGIREVGEATASGLAAHFGTLEALINASIDD 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW----------LNNP------- 598
L N+P +G F + +R +I L +VGI+W +++P
Sbjct: 546 LQNVPDVGIVVATHVFNFFEEESNRAVIRDLTENVGIHWPAPQVVKAEEIDSPFAGKTVV 605
Query: 599 -----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G KV +SK T+ L+ G+ G KL KA +L I+++DE
Sbjct: 606 LTGTLSQMSRDDAKARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAE 665
Query: 642 FVKIV 646
++++
Sbjct: 666 MLRLL 670
>gi|293395040|ref|ZP_06639327.1| DNA ligase [Serratia odorifera DSM 4582]
gi|291422447|gb|EFE95689.1| DNA ligase [Serratia odorifera DSM 4582]
Length = 673
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 263/666 (39%), Positives = 396/666 (59%), Gaps = 37/666 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P I D +YD+L+ EL+ +EE +PEL+T DS TQ VG
Sbjct: 7 KINQLRTSLRHHEYLYHVLDAPEIPDAEYDRLMRELRTLEEAHPELITADSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F ++ + F KR+ + LK ++ + + ELK DG+AV+L YE
Sbjct: 67 LTAFDQVRHEVPMLSLDNVFDEDSYLAFYKRVQDRLKSSEPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT N+ I IPL L P +EVR EV + + F K+N
Sbjct: 127 DGELVRAATRGDGTTGENITANVRTIRAIPLRLIGDNIPRRVEVRGEVFMPQAGFEKMND 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SH + L +
Sbjct: 187 EARRKDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHYQRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +G ++++ FY+++ R L ++IDGVV KI+ + Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVRLCTGSDQVLAFYRQVEQDRSQLGFDIDGVVVKIDDIDLQERLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T ++ + Q+GRTG ITPVA L+PVL+ G+T++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIP++ + RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDTVIVRRAGDVIPQVVGVVEDRRPPDAREVVFPQHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+IE+LV V L+++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRAMDVDGMGDKIIEQLVEKEYVKNPAGLFRLTAGMLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N+ A++K+K TTF+RF+YALGIR VGE+TA LA +F +L+ + A E
Sbjct: 486 DRMGPKSAQNLASALEKAKQTTFARFLYALGIREVGESTAANLAAHFGSLDKLRAADVEA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL--RDVGIYW----------LNNP------ 598
L +P +G K + F + L++ +I +L D+GI+W +++P
Sbjct: 546 LKQVPDVGEVVAKHVVNFFAEALNQQVIDELVSDDIGIHWPAPVVVAVEEIDSPFAGKTV 605
Query: 599 ------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 VLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIAVIDEA 665
Query: 641 NFVKIV 646
++++
Sbjct: 666 EMIRLL 671
>gi|157144662|ref|YP_001451981.1| NAD-dependent DNA ligase LigA [Citrobacter koseri ATCC BAA-895]
gi|166215574|sp|A8ADI2.1|DNLJ_CITK8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|157081867|gb|ABV11545.1| hypothetical protein CKO_00382 [Citrobacter koseri ATCC BAA-895]
Length = 671
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 262/664 (39%), Positives = 398/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E ++P+L+T DS +Q VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQHPDLITPDSPSQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSGDKLTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L P LEVR EV + + F K+N+
Sbjct: 127 NGVLISAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 EARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY K+ R L ++IDGVV K+N ++ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPEAVLDFYHKVEEDRPTLGFDIDGVVIKVNSMALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ + P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVEFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL GI+W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGIHWPAPIVVNADEIDSPFAGKTIVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSLMSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|388565828|ref|ZP_10152310.1| DNA ligase [Hydrogenophaga sp. PBC]
gi|388266991|gb|EIK92499.1| DNA ligase [Hydrogenophaga sp. PBC]
Length = 718
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 271/707 (38%), Positives = 413/707 (58%), Gaps = 75/707 (10%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+ ++ R EL+ +LH H YY D P I D +YD+L EL+ IE ++PEL+T DS TQ
Sbjct: 13 ASVAERAAELRAQLHHHAHLYYTLDAPKIPDAEYDRLFQELQAIEAQHPELMTPDSPTQR 72
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDE--DVIIFNKRITNELKLTKN---IEYIAELKF 126
VG + V H M+S+ E F+ R+ EL L + +EY+AELKF
Sbjct: 73 VGGAILKALAPVRHAVPMLSIRTETDTEASGAAAFDARVRRELGLAEADPPVEYLAELKF 132
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+A++LRYE G L +A+TRGDG GE++T N+ I +IPL L P E+LEVR EV +
Sbjct: 133 DGLAMSLRYEQGVLVRAATRGDGETGEDVTHNVRTIGQIPLRLPNDVP-EVLEVRGEVYM 191
Query: 187 YKKDFIKLNKYRYHL------GLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL 240
+ F LN+ + G K F NPRNAAAG +RQL+ +I + + L FFA+ GE+
Sbjct: 192 RRDQFEALNERQREKIAQGAKGEKTFVNPRNAAAGAVRQLDSRIARERPLSFFAYSWGEV 251
Query: 241 RGMNMPSSHSELLNWYQKI---GLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGV 297
G P + +W ++ G + + +V G ++L+ F+++I +R LPY+IDGV
Sbjct: 252 VGDESPPATQ--YDWLMRLKAWGFPVAEQTAVCRGADELVAFHRRIGEQRDALPYDIDGV 309
Query: 298 VYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVL 357
VYK+N L TQK+LGF +R PR+A+A+K+ ++E LT ++AI++Q+GRTG +TPVA L PV
Sbjct: 310 VYKVNSLDTQKRLGFVTREPRWAVAHKYPAQEQLTTVQAIDVQVGRTGKLTPVAKLAPVF 369
Query: 358 IDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSIL--------------S 403
+ G+T+T ATLHNE E RK++++GDTV+V R+G+VIP++ S +L
Sbjct: 370 VGGVTVTNATLHNELEARRKDVRVGDTVIVRRAGDVIPEVVSVVLPSVQPEPVEGASREG 429
Query: 404 LRPND-----------SKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQ 452
LRP D + F +P CP+C S + E RC+G C AQRK +
Sbjct: 430 LRPFDKLRTGQAQPERGEPFTMPAHCPVCGSDAVREEGEADHRCTGGLF-CAAQRKQAIL 488
Query: 453 HFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQ 512
H++ R+A++I GLG K++E+LV++ ++ T DLYK+ L L+R++ K A N+L A+Q
Sbjct: 489 HYAQRRAVDIEGLGDKLVEQLVDSGLIKTLPDLYKLGLTALAGLERMAEKSAQNVLDALQ 548
Query: 513 KSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFI 572
K + TT R ++ LGIRHVGE TAK+L+ +F +L+ + A+ ++LL + +G ++
Sbjct: 549 KRRETTLPRLLFGLGIRHVGEATAKDLSRHFGSLDRIMDASVDELLQVNDVGPVVAQSIR 608
Query: 573 KFINQPLHRLLISQLRDVGIYWLNN---------------------PNTK---------- 601
F Q +R ++ QLR G++W N P K
Sbjct: 609 TFFEQEHNREVVEQLRAAGVHWPENEGEHNTPQPLLGKTFVLTGTFPTLKREDAKAMLEA 668
Query: 602 -GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
G KV +SK T+Y+V G++ G KL+KA +L + ++DE + +++
Sbjct: 669 AGAKVAGSVSKKTDYVVAGEEAGSKLDKARELGVAVIDEAAMLALLQ 715
>gi|300724062|ref|YP_003713378.1| DNA ligase [Xenorhabdus nematophila ATCC 19061]
gi|297630595|emb|CBJ91260.1| DNA ligase [Xenorhabdus nematophila ATCC 19061]
Length = 658
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 262/658 (39%), Positives = 397/658 (60%), Gaps = 36/658 (5%)
Query: 25 LHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVH 84
+ H Y++ D P I D +YD+L+ ELK +EE++PE +T DS TQ +G + V
Sbjct: 1 MRHHEYLYHVMDAPEIPDAEYDRLMRELKALEEQHPEWVTADSPTQRIGATPLSAFEQVR 60
Query: 85 HTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQAS 144
H M+SLDN F +E + F+KR+ + LK +++ + ELK DG+AV+L YE G L QA+
Sbjct: 61 HEIPMLSLDNVFDEESYLAFDKRVRDRLKDSQDWVFCCELKLDGLAVSLLYENGELVQAA 120
Query: 145 TRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLK 204
TRGDG GENIT N+ IH IPL L + P +E+R EV I + F KLN+ G K
Sbjct: 121 TRGDGTTGENITANVRTIHAIPLRLKGENIPARVEIRGEVFIKQTGFEKLNEEARRTGNK 180
Query: 205 KFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSIC 264
F NPRNAAAG LRQL+P+I + L F+ +G+G G +P+SH L +++ GL +
Sbjct: 181 VFANPRNAAAGSLRQLDPRITAKRPLTFYCYGIGVQEGGALPASHYARLMQFKEWGLPVS 240
Query: 265 GEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYK 324
+ + G ++I+FY+ I +R L ++IDGVV K++ L Q++LGF ++APR+A A+K
Sbjct: 241 DKVKLCLGTQQVIDFYQDIEQQRPTLGFDIDGVVVKVDSLELQERLGFVAKAPRWATAFK 300
Query: 325 FLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDT 384
F ++E +T ++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R ++IGDT
Sbjct: 301 FPAQEQMTVVRDVEFQVGRTGAITPVARLEPVSVAGVTVSNATLHNADEIERLGLRIGDT 360
Query: 385 VVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECI 444
V++ R+G+VIP++ I RP +S P CP+C S I +E +ARC+G C
Sbjct: 361 VIIRRAGDVIPQVVGVIHERRPAESLEVIFPQHCPVCGSDIERVEGEAVARCTGGLF-CG 419
Query: 445 AQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLA 504
AQRK L+HF SR+AM++ G+G+K+IE+LV+ V T DL+++ L L+R+ K A
Sbjct: 420 AQRKEALRHFVSRRAMDVDGMGEKIIEQLVDKEYVKTPADLFRLTAGKLTGLERMGPKSA 479
Query: 505 NNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIG 564
N++ A++K++ TTF+RFIY+LGIR VGETTA L ++F LE + A E L+ + +G
Sbjct: 480 QNVINALEKARKTTFARFIYSLGIREVGETTAANLVSHFGTLEKLQAADTEALIAVQDVG 539
Query: 565 STTVKAFIKFINQPLHRLLISQL-RDVGIYW--LNNPN---------------------- 599
+ F N+P ++ +I L ++GI+W +PN
Sbjct: 540 GIVASHVVNFFNEPHNQAVIDDLVNNIGIHWESAESPNLGEIDGPFAGKTVVLTGSLNRL 599
Query: 600 ----------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
G KV +SK T+ ++ G+ G KL KA +L I ++DE +++++
Sbjct: 600 SRDEAKDKLAALGAKVTGSVSKKTDLVIAGEAAGSKLAKANELGIPVIDEDEMIRLLR 657
>gi|444427961|ref|ZP_21223322.1| NAD-dependent DNA ligase LigA [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444238807|gb|ELU50396.1| NAD-dependent DNA ligase LigA [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 670
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 276/664 (41%), Positives = 394/664 (59%), Gaps = 34/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ ELK+ LH H + YY+ DNP I D +YD+++ EL IE ++PEL+T DS +Q VG
Sbjct: 8 RLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPELVTVDSPSQRVGGQP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F D ++ F+KR + + +Y E K DG+AV+L YE
Sbjct: 68 LSEFSQVTHEVPMLSLDNAFDDAELDGFHKRAQDRVVGHTIKQYCCEPKLDGLAVSLLYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I IPL L K P LEVR EV + K F KLN+
Sbjct: 128 NGVLVQAATRGDGTTGENITENVRTISAIPLKLQGKDWPTRLEVRGEVFMPKAGFDKLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I ++ L F+A+ VG + G + +SH E
Sbjct: 188 NARKKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVEGATLANSHYERFLQI 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL +C E + + ++ +Y+ I +R L YEIDGVV K++ ++ Q++LGF +RA
Sbjct: 248 KSWGLPMCPETKRVDSLEEVKAYYQDILTRREALAYEIDGVVIKVDDIAIQERLGFVARA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+P+ + G+T++ ATLHN EI R
Sbjct: 308 PRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHNADEIER 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
+ +GD VV+ R+G+VIP++ S I RP ++ P+ CP+C S + IE + RC
Sbjct: 368 LQVMVGDQVVIRRAGDVIPQVVSVIKERRPETAREILFPDACPVCGSHVERIEGEAVTRC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++ L L
Sbjct: 428 TGGLV-CQAQRKEALKHFVSRKALDVDGLGDKVIEQLVDREMVETPADLFKLSAGVLTVL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++KSKLTT RF+Y+LGIR VGE TA LA YFKNL+ + +ATEEQ
Sbjct: 487 ERMGPKSATNVVNALEKSKLTTLPRFLYSLGIREVGEATAANLAQYFKNLDAIQQATEEQ 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L+ + IG K F + ++ ++ L GI W
Sbjct: 547 LIEVQDIGVIVAKHITTFFGEEKNQAVVQDLLAQGINWPEIAAPQEGVELPLEGKTVVLT 606
Query: 595 -----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
L K G KV +SK T+ L G+ G KL KA +L I+I E++ +
Sbjct: 607 GTLSQLGRSEAKEALQNLGAKVTGSVSKKTDILFVGENAGSKLAKAQELGIEIQTEQDLL 666
Query: 644 KIVK 647
++K
Sbjct: 667 NLMK 670
>gi|365108617|ref|ZP_09336476.1| DNA ligase [Citrobacter freundii 4_7_47CFAA]
gi|363640511|gb|EHL79982.1| DNA ligase [Citrobacter freundii 4_7_47CFAA]
Length = 671
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 263/664 (39%), Positives = 396/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E ++PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDKLTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPTRLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 EARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGVLPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + ++ +++ +Y K+ R L ++IDGVV K+N + Q++LGF +RA
Sbjct: 247 KEWGLPVSDRVTLCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSMVLQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIDR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP+D++ + P CP+CNS + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPDDTREIEFPTHCPVCNSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+ + L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFTLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF RF+YALGIR VGE TA LA +F LE + A+ E+
Sbjct: 486 DRMGPKSAQNVVNALEKAKETTFVRFLYALGIREVGEATAAGLAAHFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL GI+W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNREVIVQLLAQGIHWPAPVVINAEEIDSPFAGKTVVL 605
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSLMSRDDAKARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|238752012|ref|ZP_04613496.1| DNA ligase [Yersinia rohdei ATCC 43380]
gi|238709712|gb|EEQ01946.1| DNA ligase [Yersinia rohdei ATCC 43380]
Length = 670
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 262/661 (39%), Positives = 399/661 (60%), Gaps = 36/661 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +LK L H YY+ D P I D +YD+++ +L+++E ++PEL+T DS TQ VG
Sbjct: 7 QINQLKTSLRHHEHQYYVLDAPEIPDAEYDRMMQQLRELEAQHPELITNDSPTQRVGGAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SLDN F +E + F+KR+ + LK + + + ELK DG+AV+L YE
Sbjct: 67 LDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKTAEPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT N+ I IPL L+ P +EVR EV + + F +LN+
Sbjct: 127 NGELVRAATRGDGTTGENITVNVRTIRAIPLRLHGDNIPRRVEVRGEVFMPQAGFEQLNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG + G +P SH + L +
Sbjct: 187 EARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLVDGGELPRSHIQRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +G +++I FY+++ R L ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KDWGLPVSDRVKLCTGSDQVIAFYRQVEQDRAELGFDIDGVVIKVDSLNLQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T+++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIP++ ++ RP D+K P+ CP+C S I +E +ARC
Sbjct: 367 LGLRIGDTVIVRRAGDVIPQVVGVVMEQRPPDAKEILFPDHCPVCGSDIERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SR+A+++ G+G K+IE+LV V DL+ + L L
Sbjct: 427 TGGLF-CAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFTLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N+++A++K+K TTF+RF+YALGIR VGE TA LA +F+ L + A +
Sbjct: 486 DRMGPKSAQNLIVALEKAKQTTFARFLYALGIREVGEATAANLAAHFRTLANLRAADIDA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L ++P +G K + F+N+ ++ +I L V I W +++P
Sbjct: 546 LKSVPDVGEVVAKHVLNFLNEEHNQKVIEALEQV-ITWPEPQRIITEEIDSPFAGKTVVL 604
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L IK++DE
Sbjct: 605 TGSLTVLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLIKAQELGIKVIDEAEM 664
Query: 643 V 643
+
Sbjct: 665 I 665
>gi|146312580|ref|YP_001177654.1| NAD-dependent DNA ligase LigA [Enterobacter sp. 638]
gi|190359255|sp|A4WD23.1|DNLJ_ENT38 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|145319456|gb|ABP61603.1| DNA ligase, NAD-dependent [Enterobacter sp. 638]
Length = 671
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 263/663 (39%), Positives = 399/663 (60%), Gaps = 35/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++T+L+ L H Y++ D P + D +YD+L+ EL+++E ++PEL+T DS TQ VG
Sbjct: 7 QLTQLRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELVTPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F +E + FNKR+ + LK + + ELK DG+AV++ YE
Sbjct: 67 LASFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSADTLTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+IT N+ I IPL L P LEVR EV + +K F K+N
Sbjct: 127 NGLLVRAATRGDGTTGEDITANVRTIRAIPLTLRGDNIPARLEVRGEVFLPQKGFEKIND 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 EARRTGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGVLPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + + ++ FY K+ R +L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KEWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPSLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + + S RP+D++ P CP+C S + +E ++ RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVESERPDDTREIVFPAHCPVCGSDVERVEGEVVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL++++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLSAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F LE + KAT +
Sbjct: 486 DRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEQLEKATIDD 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I +L + GI+W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGKLLEEGIHWPAPVVINVEEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVAIGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEM 665
Query: 643 VKI 645
+++
Sbjct: 666 LRL 668
>gi|451971661|ref|ZP_21924878.1| DNA ligase [Vibrio alginolyticus E0666]
gi|451932391|gb|EMD80068.1| DNA ligase [Vibrio alginolyticus E0666]
Length = 685
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 277/663 (41%), Positives = 392/663 (59%), Gaps = 34/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ ELK+ LH H + YY+ DNP I D +YD+L+ EL IE + P+L+T DS +Q VG
Sbjct: 23 RLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITVDSPSQRVGGQP 82
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F D ++ F+KR + EY E K DG+AV+L YE
Sbjct: 83 LSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQERVGSQSVKEYCCEPKLDGLAVSLLYE 142
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I IPL L P LEVR EV + K F KLN+
Sbjct: 143 NGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRGEVFMPKAGFEKLNE 202
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I ++ L F+A+ VG ++G + +SH E
Sbjct: 203 LARKKGEKIFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGAELAASHYERFLQI 262
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL +C E + + + +Y+ I +R LPYEIDGVV KI+ ++ Q++LGF +RA
Sbjct: 263 KSWGLPMCPETKRVESLADVKAYYQDILQRRDALPYEIDGVVIKIDDIAVQERLGFVARA 322
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+ALAYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 323 PRWALAYKFPAQEEMTTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIER 382
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ S I RP ++ P CP+C S + IE + RC
Sbjct: 383 LQVKIGDHVVIRRAGDVIPQVVSVIKERRPETARDIIFPTQCPVCGSHVERIEGEAVTRC 442
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++ L L
Sbjct: 443 TGGLV-CQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDREMVKTPADLFKLSAGILTVL 501
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A NI+ A++KSK TT RF+Y+LGIR VGE TA LA +FK LE + A EEQ
Sbjct: 502 DRMGPKSAQNIVNALEKSKETTLPRFLYSLGIREVGEATAANLAMHFKTLEAIQNANEEQ 561
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------- 601
L+ + IG+ + F ++ ++ ++ L + GI+W T+
Sbjct: 562 LIEVQDIGAVVAQHITTFFSEEQNQAVVKDLLEQGIHWPEINTTEQVGELPLEGKTVVLT 621
Query: 602 ------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +SK T+ L G+ G KL KA +L I+I E++ +
Sbjct: 622 GTLSQLGRTEAKEALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLL 681
Query: 644 KIV 646
+++
Sbjct: 682 ELM 684
>gi|417359021|ref|YP_002932692.2| DNA ligase, NAD-dependent, putative [Edwardsiella ictaluri 93-146]
gi|409033189|gb|ACR68457.2| DNA ligase, NAD-dependent, putative [Edwardsiella ictaluri 93-146]
Length = 675
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 255/667 (38%), Positives = 400/667 (59%), Gaps = 38/667 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H YY+ D+P I+D +YD+L+ +LK++E +P L+T DS +Q VG
Sbjct: 8 QLEQLRDALRHHEYQYYVLDDPQITDAEYDRLMMQLKQLEAVHPALVTVDSPSQRVGGAP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
VHH M+SLDN F +E F+KR+ LK + + + E K DG+AV+L YE
Sbjct: 68 LAAFGQVHHEVPMLSLDNVFDEESYQAFDKRLHERLKSDEPLTFCCEPKLDGLAVSLLYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+IT+N+ I IPL L + P +EVR EV + + F +N+
Sbjct: 128 QGVLVRAATRGDGTTGEDITSNVKTIRAIPLRLQGEAIPARIEVRGEVFMPQDGFEAMNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L F+ +G G+L G +P SH + L +
Sbjct: 188 EARRRGAKIFANPRNAAAGSLRQLDPRITAQRPLTFYCYGTGQLEGGALPDSHYQCLQRF 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + G +++ +Y++I R L ++IDGVV K++ ++ Q++LGF +RA
Sbjct: 248 KSWGLPVSERVRLCCGSAEVLAYYRQIGQARPTLGFDIDGVVIKVDDIAIQERLGFVARA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T++ + Q+GRTG ITPVA L+PVL+ G+T++ ATLHN EI R
Sbjct: 308 PRWATAFKFPAQEQMTRLNGVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHNADEIER 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
+++IGDTV+V R+G+VIP++ + ++RP D+ P CP+C S++ E +ARC
Sbjct: 368 LDLRIGDTVIVRRAGDVIPQVVGVVEAMRPRDAHEIGFPTHCPVCGSEVERTEGEAVARC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG I C AQRK L+HF SR+AM++ G+G K+IE+LV+ V T DLY+++ L L
Sbjct: 428 SGGLI-CAAQRKESLKHFVSRRAMDVEGMGDKVIEQLVDKEYVATPADLYRLSAGKLTGL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A ++ A+ +S+ TT +RF++ALGIR VGE TA LA++F +L+ + A E
Sbjct: 487 ERMGPKSATKLIAALDRSRETTLARFLFALGIREVGEATAANLASHFGSLQALRAADLES 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL--RDVGIYW-----------LNNP----- 598
L +P++G + F+++ +R +I +L +VGI W +++P
Sbjct: 547 LKRVPEVGEVVASHIVHFLSEEHNRQVIDELISDEVGIRWPEGAPAQSAPAVDSPFAGKT 606
Query: 599 -------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
G +V +SK T+ ++ G G KL KA L I+++DE
Sbjct: 607 VVLTGSLSVLSRDEAKDRLTALGARVSGSVSKKTDLVIAGDAAGSKLAKANILGIEVIDE 666
Query: 640 KNFVKIV 646
++++
Sbjct: 667 AQMLRML 673
>gi|238765534|ref|ZP_04626449.1| DNA ligase [Yersinia kristensenii ATCC 33638]
gi|238696249|gb|EEP89051.1| DNA ligase [Yersinia kristensenii ATCC 33638]
Length = 670
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 262/664 (39%), Positives = 394/664 (59%), Gaps = 36/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P I D +YD+L+ +L+ +E ++PEL+T DS TQ VG
Sbjct: 7 QINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITNDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SLDN F +E + F+KR+ + LK + + + ELK DG+AV+L YE
Sbjct: 67 LDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKSAEPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT N+ I IPL L P +EVR EV + + F +LN
Sbjct: 127 EGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVFMPQAGFEQLND 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SH + L +
Sbjct: 187 EARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHIQRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +G ++I FY+++ R L ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 KHWGLPVSNRVKLCTGSEQVITFYRQVEQDRAGLGFDIDGVVIKVDSLDLQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T+++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIP++ ++ RP D+K P CP+C S I +E +ARC
Sbjct: 367 LGLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAKEITFPEHCPVCGSDIERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SR+A+++ G+G K+IE+LV V DL+ + L L
Sbjct: 427 TGGLF-CAAQRKEALKHFVSRRALDVEGMGDKIIEQLVEKQYVENPADLFTLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F+NL + A E
Sbjct: 486 DRMGPKSAQNLIAALEKAKQTTFARFLYALGIREVGEATAANLAAHFRNLTNLRAADIEA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L ++P +G K + F+ + ++ +I L V I W +++P
Sbjct: 546 LKSVPDVGEIVAKHVLNFLGEEHNQKVIEALEKV-ISWPEPQQIIAEEIDSPFAGKTVVL 604
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 605 TGSLTILSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEM 664
Query: 643 VKIV 646
++++
Sbjct: 665 IRLL 668
>gi|271501855|ref|YP_003334881.1| DNA ligase [Dickeya dadantii Ech586]
gi|270345410|gb|ACZ78175.1| DNA ligase, NAD-dependent [Dickeya dadantii Ech586]
Length = 683
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 274/681 (40%), Positives = 402/681 (59%), Gaps = 41/681 (6%)
Query: 4 HAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELL 63
+K + + ++ +V L+ +L H Y++ D P I D +YD L+ LK +E+ +PEL+
Sbjct: 5 ESKTADDIAAVAAQVEALRAQLRYHEYKYHVEDAPEIPDAEYDTLMNTLKVLEQAHPELV 64
Query: 64 TKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAE 123
T DS TQ VG + V H M+SLDN F + + F KRI + LK + + E
Sbjct: 65 TPDSPTQRVGAAPLDAFDTVAHDVPMLSLDNVFDEASFLAFCKRINDRLKNDAELTFCCE 124
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LK DG+AV+L YE G L +A+TRGDG GENIT NI I IPL L+ P LEVR E
Sbjct: 125 LKLDGLAVSLLYEQGVLVRAATRGDGTTGENITANIRTIGAIPLRLHGDNIPTRLEVRGE 184
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
V + K F LN+ G K F NPRNAAAG LRQL+P+I + L F +GVG + G
Sbjct: 185 VFMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITATRPLTFLCYGVGLVEGG 244
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
+P +H + L ++ GL + + +G ++ FY+++ +R L ++IDGVV K+N
Sbjct: 245 TLPDTHWQRLMQFRDWGLPVSDRIRLCTGSEAVLNFYRQVEQERETLGFDIDGVVIKVNE 304
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
L+ Q++LGF +RAPR+A+A+KF ++E LT ++ + Q+GRTG ITPVA L+PV + G+ +
Sbjct: 305 LALQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVARLEPVAVAGVVV 364
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
+ ATLHN EI R IQIGD V V R+G+VIP+I S +LS RP+D++ P CP+C S
Sbjct: 365 SNATLHNADEIERLGIQIGDRVAVRRAGDVIPQIVSVVLSERPSDARPIVFPEHCPVCGS 424
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
++ +E + RC+G C AQRK L+HF SR+A+++ G+G K+I++LV V T
Sbjct: 425 ELERVEGEAVTRCTGGLF-CAAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVKTPA 483
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL +++ L RLDR+ K A N++ A+ K+K TTF+RF+YALGIR VGE TA LA++F
Sbjct: 484 DLLRLDIGILTRLDRMGPKSAQNLVSALDKAKSTTFARFLYALGIRDVGEATAANLASHF 543
Query: 544 KNLECMFKATEEQLLNIPKIG---STTVKAFIKFI-NQPLHRLLISQLRDVGIYW----- 594
L+ + A E L +P +G +T V+ F+ NQ + + LIS +VGI+W
Sbjct: 544 GTLDALQAADLEALQQVPDVGIVVATHVRHFLDEAHNQQVIQALISD--EVGIHWPDPVR 601
Query: 595 -----------------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKK 625
L+ K G KV +SK T+ ++ G+ G K
Sbjct: 602 VDVEASTSPFAGKTVVLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSK 661
Query: 626 LEKAIKLNIKILDEKNFVKIV 646
L KA +L I ++DE ++++
Sbjct: 662 LAKAQELGIAVIDEAEMMRLL 682
>gi|428150592|ref|ZP_18998361.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae ST512-K30BO]
gi|427539457|emb|CCM94499.1| DNA ligase [Klebsiella pneumoniae subsp. pneumoniae ST512-K30BO]
Length = 647
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 260/645 (40%), Positives = 396/645 (61%), Gaps = 35/645 (5%)
Query: 36 DNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNG 95
D P + D +YD+L+ +L+++E ++PEL+T DS TQ VG + H M+SLDN
Sbjct: 2 DAPEVPDAEYDRLMRKLRELESQHPELITPDSPTQRVGAAPLTAFSQIRHEVPMLSLDNV 61
Query: 96 FSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENI 155
F +E + FNKR+ + LK T ++ Y ELK DG+AV++ YE G L QA+TRGDG GE+I
Sbjct: 62 FDEESFLAFNKRVQDRLKSTDHLTYCCELKLDGLAVSILYENGVLVQAATRGDGTTGEDI 121
Query: 156 TTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAG 215
T+N+ I IPL L+ + P LEVR EV + + F K+N+ G K F NPRNAAAG
Sbjct: 122 TSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINEEARRTGGKVFANPRNAAAG 181
Query: 216 ILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNK 275
LRQL+P+I + L FF +GVG L G +P+SHS L ++ GL + ++ +
Sbjct: 182 SLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHSARLLQFKAWGLPVSDRVTLCHTPEE 241
Query: 276 LIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIK 335
++ +Y+K+ +R +L ++IDGVV K++ L+ Q++LGF +RAPR+A+A+KF ++E +T ++
Sbjct: 242 VLTYYRKVEEERPHLGFDIDGVVIKVDSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVR 301
Query: 336 AINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIP 395
+ Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R ++IGD VV+ R+G+VIP
Sbjct: 302 DVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGLKIGDKVVIRRAGDVIP 361
Query: 396 KITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFS 455
++ + +LS RP D++ P CP+C S + +E +ARC+G I C AQRK L+HF
Sbjct: 362 QVVNVVLSERPADARDVVFPTHCPVCQSDVERVEGEAVARCTGGLI-CGAQRKESLKHFV 420
Query: 456 SRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSK 515
SR+A+++ G+G K+I++LV V T DL+++ L LDR+ K A N++ A++K+K
Sbjct: 421 SRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLTAGKLTGLDRMGPKSAQNVVNALEKAK 480
Query: 516 LTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575
TTF+RF+YALGIR VGE TA LA +F LE + +AT E+L +P +G F
Sbjct: 481 ETTFARFLYALGIREVGEATAAGLAAHFGTLEALEQATIEELQKVPDVGIVVATHTFNFF 540
Query: 576 NQPLHRLLISQLRDVGIYW----------------------------LNNPNTK------ 601
+ +R +I+QL G+ W L+ + K
Sbjct: 541 AEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAGKTVVLTGSLSQLSRDDAKARLVAL 600
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
G KV +SK T+ ++ G+ G KL KA +L I+++DE ++++
Sbjct: 601 GAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLL 645
>gi|429120115|ref|ZP_19180800.1| DNA ligase [Cronobacter sakazakii 680]
gi|426325361|emb|CCK11537.1| DNA ligase [Cronobacter sakazakii 680]
Length = 672
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 262/665 (39%), Positives = 391/665 (58%), Gaps = 36/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++T+L+ L H Y++ D P + D +YD+L+ EL+ +EE +PEL+T DS TQ VG
Sbjct: 7 KLTQLRTTLRHHEFLYHVMDAPEVPDAEYDRLMRELRTLEEAHPELVTPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F + + FNKR+ + LK T + Y ELK DG+AV+L YE
Sbjct: 67 LTEFSQVRHEVPMLSLDNVFDEASFLAFNKRVQDRLKSTDALVYCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+IT N+ I IPL L P LEVR EV ++N+
Sbjct: 127 NGLLVRAATRGDGTTGEDITLNVRTIRAIPLKLRGDNIPARLEVRGEVFSAAGGLKRINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P++ + L FF +GVG L G +P SH E L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGVGLLEGGELPRSHMERLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ FY ++ R L ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 KAWGLPVSERIRLVKTPEEVLAFYHQVEADRPTLGFDIDGVVIKVDSLELQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPVVFPAQCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F LE + A+ +
Sbjct: 486 DRMGPKSAQNLVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALINASIDD 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW----------LNNP------- 598
L +P +G F + +R +I L +VGI+W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFEEESNRAVIHDLTEEVGIHWPAPQVVKAEEIDSPFAGKTVV 605
Query: 599 -----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G KV +SK T+ L+ G+ G KL KA +L I+++DE
Sbjct: 606 LTGTLSQMSRDDAKARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEVIDEAE 665
Query: 642 FVKIV 646
++++
Sbjct: 666 MLRLL 670
>gi|407804012|ref|ZP_11150842.1| NAD-dependent DNA ligase LigA [Alcanivorax sp. W11-5]
gi|407022105|gb|EKE33862.1| NAD-dependent DNA ligase LigA [Alcanivorax sp. W11-5]
Length = 775
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 255/596 (42%), Positives = 376/596 (63%), Gaps = 6/596 (1%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
L+ L+ + YY+ D+P + D +YD+L +L+ +EE +PEL++ DS TQ VG
Sbjct: 12 AARLRARLNDWSYRYYVLDDPAVPDAEYDRLFRQLQALEEAHPELISADSPTQRVGDRPL 71
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
E + V H M+SL N F D D++ F++RI L L ++EY+AE K DG+AV+L YE
Sbjct: 72 EGFEEVRHEVPMLSLGNAFDDADLMDFDRRIRERLDLDGDVEYVAEPKLDGLAVSLVYEN 131
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L + +TRGDG GENIT+NI + +PL L P L+E+R EV++ + F +LN+
Sbjct: 132 GQLVRGATRGDGQTGENITSNIRTLRSVPLTLRGDAP-ALVEIRGEVMMTHEGFAELNER 190
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
+ GLK F NPRNAAAG LRQL+ K+ + L FFA+ V L G + P+ HSELL +
Sbjct: 191 QLAAGLKTFANPRNAAAGSLRQLDMKLTAQRPLEFFAYSVARLEGQDWPARHSELLEKVR 250
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
GL + E +GV L FY I +R L Y+IDGVVYK++ L Q LGF SRAP
Sbjct: 251 DWGLRVNREVRTCAGVQALRAFYDDILKRRDRLGYDIDGVVYKVDRLDWQNDLGFVSRAP 310
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 311 RWAVAHKFPAQEEITVLREVEFQVGRTGAITPVARLEPVQVGGVTVSNATLHNMDEITRL 370
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
+++IGDTVV++R+G+VIPK+ S + RP D++ +P CP+C S+I E IARC+
Sbjct: 371 DLRIGDTVVIYRAGDVIPKVVSVVTERRPADARPISLPAHCPVCGSEIFTPEGEAIARCT 430
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G I C AQRK L+HF+SR+AM+I GLG+K+++ LV +V T DLY++ + + L+
Sbjct: 431 GGLI-CSAQRKEALRHFASRRAMDIEGLGEKLVDALVEQGLVHTLADLYRLEAEPVAALE 489
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+ K A N++ A++KSK SRF++ALGI +GE TAK LA+ F L + +A E L
Sbjct: 490 RMGEKSATNLIAALEKSKQMPLSRFLFALGILQIGEETAKALASSFGELPAIRQADEILL 549
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGGKVVNFISKNT 613
L +P +G ++ F ++ ++ +I +L +G+ N G F+++ T
Sbjct: 550 LAVPDVGGKVAQSVAAFFHEAHNQEVIDELLALGLTARGN----GAPAPEFVARLT 601
>gi|440286681|ref|YP_007339446.1| DNA ligase, NAD-dependent [Enterobacteriaceae bacterium strain FGI
57]
gi|440046203|gb|AGB77261.1| DNA ligase, NAD-dependent [Enterobacteriaceae bacterium strain FGI
57]
Length = 671
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 263/664 (39%), Positives = 397/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ EL+ L H Y++ D P + D +YD+L+ EL+++E ++PEL+T DS TQ VG
Sbjct: 7 QLNELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQRVGASP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F +E + FNKR+ + LK + + Y ELK DG+AV++ YE
Sbjct: 67 LAAFTQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDALVYCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G + QA+TRGDG GE+IT N+ I IPL L P LEVR EV + + F K+N
Sbjct: 127 NGVMVQAATRGDGTTGEDITANVRTIRAIPLKLRGDNIPARLEVRGEVFLPQAGFEKIND 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P+SH L +
Sbjct: 187 DARRTGGKLFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPASHMGRLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + + +++ +Y K+ R L ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVKLCNSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVDSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP++++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPDETQEIVFPTHCPVCQSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+ + L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFTLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 DRMGPKSAQNVVNALEKAKNTTFARFLYALGIREVGEATAAGLAGYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G+ W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIQQLLKEGVNWPAAVMIKAEDIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|345863920|ref|ZP_08816127.1| DNA ligase [endosymbiont of Tevnia jerichonana (vent Tica)]
gi|345125030|gb|EGW54903.1| DNA ligase [endosymbiont of Tevnia jerichonana (vent Tica)]
Length = 758
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 247/597 (41%), Positives = 389/597 (65%), Gaps = 11/597 (1%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S+ ++ L++++ HN YY+YD P I D +YD+L+ +L+ +E ++PELL+ DS TQ
Sbjct: 5 SEAEAQIEALREQIRFHNRQYYVYDAPQIPDAEYDRLMRQLQVLEAEHPELLSDDSPTQR 64
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIE--YIAELKFDGI 129
VG + VHH M+SLDN F+ + + F++R+ ++L L + Y AE K DG+
Sbjct: 65 VGGEPLQGFAEVHHRVAMLSLDNAFNAQKINEFDRRVRDQLGLAADASLIYAAEPKLDGL 124
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
A++LRYE G L QA+TRGDG+ GE++++N+ I IPL L P +LEVR E+ + K
Sbjct: 125 AISLRYEQGRLVQAATRGDGSCGEDVSSNVRTIKAIPLRLIGDDVPPVLEVRGEIFMPKA 184
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LN+ G K+F NPRNAAAG LRQL+P+I + L FF +G GE+ G + S
Sbjct: 185 GFARLNEAARQQGEKEFVNPRNAAAGSLRQLDPRITAQRPLAFFCYGFGEIAGGPLEQSQ 244
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
S+ + + GL + + GV+ ++++Y++I +R +L YEIDGVV+K++ Q++
Sbjct: 245 SQSILRLRDWGLPVSPLLEQVDGVDGIVDYYQRIEAQREHLNYEIDGVVFKVDLFEQQQQ 304
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF +RAPR+A+AYKF ++E LT+++A+ Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 305 LGFIARAPRWAIAYKFPAQEELTRVEAVEFQVGRTGAITPVARLQPVFVGGVTVSNATLH 364
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N E+ RK+++ GDTV V R+G+VIP++ + RP+DSK ++P +CP+C S+++ E
Sbjct: 365 NMDEVLRKDVRPGDTVYVRRAGDVIPEVVRVLPERRPSDSKPVELPKLCPVCGSEVVRPE 424
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARCSG + C AQRK ++HF+SRKA++I GLG K++E+LV +V DL+ ++
Sbjct: 425 GEAVARCSGG-LYCPAQRKEAIKHFASRKALDIEGLGDKLVEQLVEQGLVKDPADLFTLS 483
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
+ L L+R++ K A N+L A+++SK T+ +RF++ALGIR VG+ TA LA +F++L+ +
Sbjct: 484 LEELAGLERMAEKSAQNLLDALERSKQTSLARFLFALGIREVGDATAAALARHFRDLQPL 543
Query: 550 FKATEEQLLN---IPKIGSTTVKAFIKFINQPL-HRLLISQLRDVGIYWLNNPNTKG 602
A + ++ I +G++T +A + PL L L D WL N +G
Sbjct: 544 MTAERDDFIHDSGIKGVGASTAQAICDTLAGPLPAEPLAGGLAD----WLAGMNVRG 596
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 37/172 (21%)
Query: 519 FSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN-----IPKIGSTTVKAFIK 573
+ ++ + +R + A+ L+ F +LE + +AT E L + +G +
Sbjct: 585 LADWLAGMNVRGLNRAVAERLSERFGSLEALRQATPELLRREQRSLVEGVGPIVADHIVT 644
Query: 574 FINQPLHRLLISQLRDVGIYW------------------------LNNPNTK-------- 601
F QP ++ +I +LR VG+ W L+ P +
Sbjct: 645 FFRQPHNQEVIEKLRQVGVNWEEEAPPETPAESPLLGKTVVLTGTLSRPRSAIKAELQAL 704
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGFSTET 653
G KV +SKNT+YL+ G + G KL KA +L ++ILDE +++ G S ++
Sbjct: 705 GAKVTGSVSKNTDYLIAGAEAGSKLSKAQQLGVEILDEAGLARLLGGVSEQS 756
>gi|261345310|ref|ZP_05972954.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541]
gi|282566645|gb|EFB72180.1| DNA ligase, NAD-dependent [Providencia rustigianii DSM 4541]
Length = 678
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 270/668 (40%), Positives = 399/668 (59%), Gaps = 36/668 (5%)
Query: 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG 73
L ++ LK++L H Y++ D P I D +YD+L+ ELK +E + PEL+T DS TQ VG
Sbjct: 10 LKQKIDSLKQQLRHHEYLYHVLDAPEIPDVEYDKLMQELKGLEAENPELITTDSPTQRVG 69
Query: 74 LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNL 133
V H M+SLDN F +E + F+KR+ + L + + ELK DG+AV+L
Sbjct: 70 AAPLTAFGTVRHEVPMLSLDNVFDEESYLAFDKRVKDRLNNHTELTFCCELKLDGLAVSL 129
Query: 134 RYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIK 193
YE G L QA+TRGDG++GENIT N+ I IPL L P +E+R EV + +K F
Sbjct: 130 LYENGELVQAATRGDGSVGENITVNVRTIKAIPLRLRGDNIPARVEIRGEVFMPQKGFEA 189
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253
+N+ K F NPRNAAAG LRQL+P+I + L F+ +GVG + G +P +H E L
Sbjct: 190 MNEEARRTDGKIFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGNTLPDTHYERL 249
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
++ GL + + G ++++FY + R L ++IDGVV K+N ++TQ+KLGF
Sbjct: 250 MQFKAWGLPVSEHVQLRVGCQQVLDFYHHVEKIRPTLGFDIDGVVIKVNDIATQEKLGFV 309
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
SRAPR+A A+KF ++E LT +K + Q+GRTG ITPVA L+PV + G+ ++ ATLHN E
Sbjct: 310 SRAPRWATAFKFPAQEQLTLLKDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLHNADE 369
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
I R ++IGDTVV+ R+G+VIP+I S ++ RP DS+ P CP+C+S I +E +
Sbjct: 370 IERLGVRIGDTVVIRRAGDVIPQIVSVVMDKRPADSREITFPTQCPVCHSDIERVEGEAV 429
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
ARC+G + C AQ K L+HF SR+AM++ G+G K+IE+LV+A V A LY+++ L
Sbjct: 430 ARCTGG-LTCGAQLKESLKHFVSRRAMDVDGMGDKIIEQLVDAEYVKNAAQLYQLSAGKL 488
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
L+R+ K A ++ A++KSK TT +RFIYALGIR VGE TA LA+++ +L+ + A
Sbjct: 489 TGLERMGPKSAQKLIDALEKSKQTTLARFIYALGIREVGEATAANLASHYASLDAVMAAD 548
Query: 554 EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYW----------LNNPNTK- 601
EE L + IG K + F ++ +R +I L + I+W +++P
Sbjct: 549 EESLKAVQDIGEVVAKHVVNFFHEEHNRQVIHDLLTIANIHWPEVKVVNSDEIDSPFAGK 608
Query: 602 -----------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
G KV +SK T+ ++ G+ G KL KAI+L +K++D
Sbjct: 609 TVVLTGSMSRLTRDEAKDQLVALGAKVAGSVSKKTDMVIAGEAAGSKLAKAIELGVKVID 668
Query: 639 EKNFVKIV 646
E V+++
Sbjct: 669 EDELVRLL 676
>gi|161502427|ref|YP_001569539.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:- str. RSK2980]
gi|190359281|sp|A9MIG0.1|DNLJ_SALAR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|160863774|gb|ABX20397.1| hypothetical protein SARI_00461 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 671
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 262/664 (39%), Positives = 395/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+ +E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRALEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+IT+N+ I IPL L P LEVR EV + + F K+N+
Sbjct: 127 NGVLVRAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 EARRSGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ ++ FY + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLAFYHNVEEDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIDR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K T F+RF+YALGIR VGE TA LA YF LE + A+ ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATIFARFLYALGIREVGEATAAGLAAYFGTLEALQAASIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNREVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|424047185|ref|ZP_17784746.1| DNA ligase, NAD-dependent [Vibrio cholerae HENC-03]
gi|408884483|gb|EKM23227.1| DNA ligase, NAD-dependent [Vibrio cholerae HENC-03]
Length = 670
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 275/663 (41%), Positives = 394/663 (59%), Gaps = 34/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ ELK+ LH H + YY+ DNP I D +YD+++ EL IE ++PEL+T DS +Q VG
Sbjct: 8 RLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPELVTVDSPSQRVGGQP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F D ++ F+KR + + +Y E K DG+AV+L YE
Sbjct: 68 LSEFSQVTHEVPMLSLDNAFDDAELDGFHKRAQDRVVGHTIKQYCCEPKLDGLAVSLLYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I IPL L K P LEVR EV + K F KLN+
Sbjct: 128 NGVLVQAATRGDGTTGENITENVRTISAIPLKLQGKDWPTRLEVRGEVFMPKAGFDKLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I ++ L F+A+ VG + G + +SH E
Sbjct: 188 NARKKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVEGATLANSHYERFLQI 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL +C E + + ++ +Y+ I +R L YEIDGVV K++ ++ Q++LGF +RA
Sbjct: 248 KSWGLPMCPETKRVDSLEEVKAYYQDILTRREALAYEIDGVVIKVDDITIQERLGFVARA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 308 PRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIER 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
+ +GD VV+ R+G+VIP++ S I RP ++ P+ CP+C S + IE + RC
Sbjct: 368 LQVMVGDQVVIRRAGDVIPQVVSVIKERRPETAREILFPDACPVCGSHVERIEGEAVTRC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++ L L
Sbjct: 428 TGGLV-CQAQRKEALKHFVSRKALDVDGLGDKVIEQLVDREMVETPADLFKLSAGVLTVL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++KSKLTT RF+Y+LGIR VGE TA LA +FKNL+ + +ATEEQ
Sbjct: 487 ERMGPKSATNVVNALEKSKLTTLPRFLYSLGIREVGEATAANLAQHFKNLDAIQQATEEQ 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L+ + IG K F + ++ ++ L + GI W
Sbjct: 547 LIEVQDIGVIVAKHITTFFGEEKNQAVVRDLLEQGINWPEIAAPQEGVELPLEGKTVVLT 606
Query: 595 -----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
L K G KV +SK T+ L G+ G KL KA +L I+I E++ +
Sbjct: 607 GTLSQLGRSEAKEALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQTEQDLL 666
Query: 644 KIV 646
++
Sbjct: 667 NLM 669
>gi|340000167|ref|YP_004731051.1| DNA ligase [Salmonella bongori NCTC 12419]
gi|339513529|emb|CCC31283.1| DNA ligase [Salmonella bongori NCTC 12419]
Length = 671
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 262/664 (39%), Positives = 396/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITADSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LTAFRQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSKEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+IT N+ I IPL L+ P LEVR EV + + F K+N
Sbjct: 127 NGVLVRAATRGDGTTGEDITANVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKIND 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYHKVEADRPTLGFDIDGVVIKVNSLVLQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVREVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP+ ++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPDATRPVVFPAHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALQAASIDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL G++W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINAQEIDSPFAGKTVVL 605
Query: 599 ----------NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|336124694|ref|YP_004566742.1| NAD-dependent DNA ligase [Vibrio anguillarum 775]
gi|335342417|gb|AEH33700.1| NAD-dependent DNA ligase [Vibrio anguillarum 775]
Length = 671
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 272/667 (40%), Positives = 405/667 (60%), Gaps = 34/667 (5%)
Query: 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG 73
+ ++++L++ LH H + YY+ DNP I D +YD+L+ EL ++E +YPEL+T DS + VG
Sbjct: 5 IEHKLSQLRETLHYHAVRYYVEDNPEIPDAEYDRLMRELLELESQYPELVTADSPSLRVG 64
Query: 74 LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNL 133
E V H M+SLDN F + ++ F+KR+ + + + E K DG+AV+L
Sbjct: 65 GKPLEGFAQVTHEIPMLSLDNVFDENELDAFHKRMQDRIPSAHFNAFCCEPKLDGLAVSL 124
Query: 134 RYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIK 193
YE G L QA+TRGDG +GENIT N+ I IPL L K P LEVR EV + K F +
Sbjct: 125 LYENGVLVQAATRGDGAVGENITENVRTISAIPLKLQGKGWPVRLEVRGEVFMPKAGFER 184
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253
LN+ G K F NPRNAAAG LRQL+ KI + L+F+A+ VG + G + SSH +
Sbjct: 185 LNQQALKKGEKTFVNPRNAAAGSLRQLDSKITAQRPLNFYAYSVGVIEGAELASSHYQRF 244
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
+ GL +C E ++S ++++ E+Y+ I +R L YEIDGVV K++ + Q+KLGF
Sbjct: 245 LQLKGWGLPMCPETRLVSSMDEVKEYYQSILTRRAQLAYEIDGVVIKVDDIELQQKLGFV 304
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
+RAPR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN E
Sbjct: 305 ARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADE 364
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
I R ++IGD+V++ R+G+VIP+I S +L R + P CP+CNS I +E +
Sbjct: 365 IERLGVKIGDSVIIRRAGDVIPQIVSVLLDRRSDTVVDIVFPQYCPVCNSDIERVEGEAV 424
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
ARC+G + C AQRK L+HF SRKA+++ GLG+K+IE+LV+ +V T DL+++ L
Sbjct: 425 ARCTGGLV-CQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDKEMVSTPADLFRLKAGQL 483
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
L+R+ K A NI+ A+ +K+TT RF+Y+LGIR VGE TA LA +F +L+ + +AT
Sbjct: 484 TVLERMGPKSAQNIVNALNAAKMTTLPRFLYSLGIREVGEATAANLALHFGSLDKIRQAT 543
Query: 554 EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--NPNTK---------- 601
E+LL + +G F Q ++ +I++L ++GI W N P+
Sbjct: 544 HEELLEVQDVGVIVASHITSFFEQDKNQRVINELIELGIQWPNIEKPSQDAILPLLGKVV 603
Query: 602 ---------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
G KV +SKNT+ L G+ G KL KA +L I+I E+
Sbjct: 604 VLTGSLSKLSRSDAKAALQELGAKVTGSVSKNTDILFAGEAAGSKLVKAQELGIEIRSEQ 663
Query: 641 NFVKIVK 647
+ ++++K
Sbjct: 664 DLLELMK 670
>gi|269960659|ref|ZP_06175031.1| DNA ligase [Vibrio harveyi 1DA3]
gi|269834736|gb|EEZ88823.1| DNA ligase [Vibrio harveyi 1DA3]
Length = 670
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 275/663 (41%), Positives = 394/663 (59%), Gaps = 34/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ ELK+ LH H + YY+ DNP I D +YD+++ EL IE ++PEL+T DS +Q VG
Sbjct: 8 RLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPELVTVDSPSQRVGGQP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F D ++ F+KR + + +Y E K DG+AV+L YE
Sbjct: 68 LSEFSQVTHEVPMLSLDNAFDDAELDGFHKRAQDRVVGHTIKQYCCEPKLDGLAVSLLYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I IPL L K P LEVR EV + K F KLN+
Sbjct: 128 NGVLVQAATRGDGTTGENITENVRTISAIPLKLQGKDWPTRLEVRGEVFMPKAGFDKLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I ++ L F+A+ VG + G + +SH E
Sbjct: 188 NARKKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVEGATLANSHYERFLQI 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL +C E + + ++ +Y+ I +R L YEIDGVV K++ ++ Q++LGF +RA
Sbjct: 248 KSWGLPMCPETKRVDSLEEVKAYYQDILTRREALAYEIDGVVIKVDDIAIQERLGFVARA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 308 PRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIER 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
+ +GD VV+ R+G+VIP++ S I RP ++ P+ CP+C S + IE + RC
Sbjct: 368 LQVMVGDQVVIRRAGDVIPQVVSVIKERRPETAREILFPDACPVCGSHVERIEGEAVTRC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++ L L
Sbjct: 428 TGGLV-CQAQRKEALKHFVSRKALDVDGLGDKVIEQLVDREMVETPADLFKLSAGVLTVL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++KSKLTT RF+Y+LGIR VGE TA LA +FKNL+ + +ATEEQ
Sbjct: 487 ERMGPKSATNVVNALEKSKLTTLPRFLYSLGIREVGEATAANLAQHFKNLDAIQQATEEQ 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L+ + IG K F ++ ++ ++ L GI W
Sbjct: 547 LIEVQDIGVIVAKHITTFFDEEKNQAVVRDLLGQGINWPDIAAPQEGVELPLEGKTVVLT 606
Query: 595 -----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
L K G KV +SK T+ L G+ G KL KA +L I+I E++ +
Sbjct: 607 GTLSQLGRSEAKEALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQTEQDLL 666
Query: 644 KIV 646
++
Sbjct: 667 NLM 669
>gi|37679166|ref|NP_933775.1| NAD-dependent DNA ligase LigA [Vibrio vulnificus YJ016]
gi|81758078|sp|Q7MMT5.1|DNLJ_VIBVY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|37197908|dbj|BAC93746.1| NAD-dependent DNA ligase [Vibrio vulnificus YJ016]
Length = 669
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 274/660 (41%), Positives = 394/660 (59%), Gaps = 34/660 (5%)
Query: 20 ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGEN 79
ELK++LH H + YY+ DNP I D +YD+++ EL IE ++PE ++ DS +Q VG V ++
Sbjct: 11 ELKQQLHYHAVRYYVEDNPEIPDAEYDRMMRELMAIEAEHPEWISVDSPSQRVGGVALDS 70
Query: 80 SKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGY 139
+ V H M+SLDN FSDE++ F KR + + + E K DG+AV+L YE G
Sbjct: 71 FRQVTHEIPMLSLDNAFSDEELESFLKRAQDRMPSAHIDAFCCEPKLDGLAVSLLYENGV 130
Query: 140 LKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRY 199
L QA+TRGDG GENIT N+ I +PL L + P +EVR EV + K F KLN
Sbjct: 131 LVQAATRGDGTTGENITENVRTIASVPLKLQGEGWPSRIEVRGEVFMPKVGFEKLNDIAR 190
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKI 259
G K F NPRNAAAG LRQL+ KI + L F+A+ VG + G+++ SSH + ++
Sbjct: 191 KKGEKVFVNPRNAAAGSLRQLDSKITATRPLAFYAYSVGVVEGISLSSSHYQRFLQLKQW 250
Query: 260 GLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRF 319
GL +C E +++G+ + FY I +R LPYEIDGVV KI+ + Q+KLGF +RAPR+
Sbjct: 251 GLPMCPETKLVNGLESVKAFYADILNRRDALPYEIDGVVIKIDDIVIQEKLGFVARAPRW 310
Query: 320 ALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNI 379
A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R +
Sbjct: 311 AIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIERLGV 370
Query: 380 QIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGS 439
+GDTVV+ R+G+VIP+I S + R D P CP+C+S + IE + RCSG
Sbjct: 371 MVGDTVVIRRAGDVIPQIVSVVKERRKGDENPIVFPTSCPVCHSHVERIEGEAVTRCSGG 430
Query: 440 WIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRV 499
+ C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+ ++ L L+R+
Sbjct: 431 LV-CQAQRKEALKHFVSRKALDVDGLGDKVIEQLVDKEMVETPADLFTLSAGVLTVLERM 489
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
K A NI+ A+ +K TT +RF+Y+LGIR VGE TA LA +FK LE + AT EQL+
Sbjct: 490 GPKSAQNIVNALNVAKETTLARFLYSLGIREVGEATAANLARHFKTLEAIQTATHEQLIE 549
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------- 594
+P IG + F + ++ ++ L + GI W
Sbjct: 550 VPDIGEVVARHITAFFAEEKNQRVVQALIEQGIVWPPVEELGSEIPQPLAGKVVVLTGTL 609
Query: 595 --LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
L+ + K G KV +SK T+ + G+ G KL KA +L ++I E++ + ++
Sbjct: 610 TQLSRGDAKAALERLGAKVTGSVSKKTDIVFAGEAAGSKLTKAQELGVEIQTEQDLLALL 669
>gi|238792031|ref|ZP_04635667.1| DNA ligase [Yersinia intermedia ATCC 29909]
gi|238728662|gb|EEQ20180.1| DNA ligase [Yersinia intermedia ATCC 29909]
Length = 670
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 259/664 (39%), Positives = 403/664 (60%), Gaps = 36/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P I D +YD+L+ +L+ +E ++PEL+T DS TQ VG
Sbjct: 7 QINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRSLEAQHPELITHDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SLDN F ++ + F+KR+ + LK + + + ELK DG+AV+L YE
Sbjct: 67 LDAFEQVRHEVPMLSLDNVFDEDSYLAFDKRVHDRLKSAEPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT N+ I IPL L+ + P+ +EVR EV + + F +LN+
Sbjct: 127 NGELVRAATRGDGTTGENITANVRTIRAIPLRLHGENIPQRVEVRGEVFMPQAGFEQLNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G ++P SH + L +
Sbjct: 187 EARRKGGKIFANPRNAAAGSLRQLDPRITAKRPLMFFCYGVGLLDGGDLPRSHIQRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +G +++I FY+++ R +L ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 KAWGLPVSNRVKLCTGSDEVIAFYRQVEQDRTSLGFDIDGVVIKVDSLDLQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T+++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWATAFKFQAQEQITQVRDVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
I+IGDTV++ R+G+VIP++ ++ RP D+K P CP+C S I +E +ARC
Sbjct: 367 LGIRIGDTVIIRRAGDVIPQVVGVVMEQRPQDTKEIVFPQHCPVCGSDIERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SR+A+++ G+G K+IE+LV V DL+++ L L
Sbjct: 427 TGGLF-CAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFELTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA +F NL+ + A +
Sbjct: 486 DRMGPKSAQNLIAALEKAKQTTFARFLYALGIREVGEATAANLAAHFCNLDNLRAADIDA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L ++P +G + F+++ ++ +I+ L V I W +++P
Sbjct: 546 LKSVPDVGEVVARHVRNFLSEEHNQKVIAALEKV-ISWPEPQQIIAEEIDSPFAGKTVVL 604
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 605 TGSLTILSRDEAKDRLAALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 664
Query: 643 VKIV 646
++++
Sbjct: 665 IRLL 668
>gi|333979118|ref|YP_004517063.1| DNA ligase [Desulfotomaculum kuznetsovii DSM 6115]
gi|333822599|gb|AEG15262.1| DNA ligase [Desulfotomaculum kuznetsovii DSM 6115]
Length = 668
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 263/663 (39%), Positives = 408/663 (61%), Gaps = 38/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV EL++E+ HN YY+ D+P+ISD +YD L+ EL K+E KYP L+T DS +Q VG
Sbjct: 11 RVEELRREIEYHNYRYYVLDDPVISDERYDALMRELIKLESKYPSLVTPDSPSQRVGGQP 70
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E V H M+SL N F + ++ F++R+ + L + +EY+ ELK DG+AV+LRYE
Sbjct: 71 REGFATVRHRIPMLSLANAFDEGELRDFDRRVRSALP-GEPVEYVVELKIDGLAVSLRYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +TRGDG GE+IT N+ I +PL ++ P LLEVR EV + K+ F++LN+
Sbjct: 130 NGLLITGATRGDGETGEDITANLKTIRAVPL--RLRRPVPLLEVRGEVYMSKEAFMRLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G F NPRNAAAG LRQL+P + ++ L F +G GE+ G+++ ++H+E L
Sbjct: 188 TREEAGEPLFANPRNAAAGSLRQLDPAVTASRQLSIFVYGTGEIEGVSV-NTHAETLALL 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+++G + + +L + +I++ K +RFNLPY IDG+V K+N L Q +LG T ++
Sbjct: 247 KELGFPVNPHHRLLPDIQAVIDYCNKWQEERFNLPYVIDGLVIKVNSLDQQARLGATMKS 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF +++A T+++ I +++GRTG++TP A+L+PV + G T++RATLHNE I
Sbjct: 307 PRWAIAFKFPAEQARTRVRDIILRVGRTGVLTPTAILEPVRLAGTTVSRATLHNEDIIKE 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGDTV+V ++G+VIP++ + I R D K F +P CP C ++ + RC
Sbjct: 367 KDIRIGDTVIVQKAGDVIPEVVAVIPEERTGDEKPFVMPRRCPECGAEAVRPPGEAGTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+ I C A+ + GL HF+SR AM+I GLG +I +L+ A +V DLY + ++L+ L
Sbjct: 427 TN--IACPARLREGLIHFASRNAMDIAGLGPAVIGQLLAAGLVRDPADLYTLRLEDLVPL 484
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N+L AI++SK R I+ALGIRHVGE A+ LA F +L+ + +AT E+
Sbjct: 485 ERLGKKSAQNLLEAIERSKSNPLYRLIFALGIRHVGERAARILAQRFGSLDRLSRATYEE 544
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------- 601
L+ IP+IG ++ I F Q +R ++ +L G+ P +
Sbjct: 545 LVTIPEIGPKIAESVITFFAQEQNRRVLEKLAAAGVNTRQEPEEEPGDKPLAGKVFVLTG 604
Query: 602 -----------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
GG+V + +S+ T+Y+V G+ PG K ++A+ L I IL E++F +
Sbjct: 605 SLSHFTRQEAQELIERLGGRVSSSVSRKTDYVVVGENPGSKYDRALALGIPILREEDFRR 664
Query: 645 IVK 647
+V+
Sbjct: 665 LVQ 667
>gi|145633173|ref|ZP_01788905.1| DNA ligase [Haemophilus influenzae 3655]
gi|144986399|gb|EDJ92978.1| DNA ligase [Haemophilus influenzae 3655]
Length = 670
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 273/666 (40%), Positives = 394/666 (59%), Gaps = 34/666 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++ L+K L ++ Y++ DNP + D++YD+L +LK +E ++PE LT DS TQ
Sbjct: 1 MTNIQTQLDNLRKTLRQYEYEYHVLDNPTVPDSEYDRLFHQLKALELEHPEFLTSDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGI 129
VG + H M+SLDN FSD + F KRI + L L K + + E K DG+
Sbjct: 61 RVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVKRIEDRLILLPKPLTFCCEPKLDGL 120
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G L QA+TRGDG GE+IT NI I +PL L PP LEVR EV +
Sbjct: 121 AVSILYVNGVLTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHA 180
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LNKY K F NPRNAAAG LRQL+P I + L A+ +G G+N+P++H
Sbjct: 181 GFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYSIGIAEGVNLPTTH 240
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
L W + IG+ + E + +G ++++ FY+ I KR +L Y+IDG V KIN ++ Q +
Sbjct: 241 YARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIALQNE 300
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF S+APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 301 LGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 360
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R NI IGDTVV+ R+G+VIP+I + RP+++K P CP+C+S+II IE
Sbjct: 361 NGDEIERLNIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIE 420
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++
Sbjct: 421 GEAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLD 479
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L RL+R+ K A N L +++ +K TT +RFI+ALGIR VGE TA LAN+FK L+ +
Sbjct: 480 LTTLTRLERMGAKSAENALNSLENAKSTTLARFIFALGIREVGEATALNLANHFKTLDAL 539
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
A E+L + +G F + + ++ L G++W
Sbjct: 540 KDANLEELQQVSDVGEVVANRIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKD 599
Query: 595 ----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L T+ G KV +S T++++ G G KL KA +LNI +L
Sbjct: 600 KTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVL 659
Query: 638 DEKNFV 643
E+ F+
Sbjct: 660 TEEEFL 665
>gi|418464185|ref|ZP_13035126.1| NAD-dependent DNA ligase LigA [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359757365|gb|EHK91520.1| NAD-dependent DNA ligase LigA [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 670
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 269/660 (40%), Positives = 389/660 (58%), Gaps = 35/660 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+K L H Y++ D+P I D++YD+L +LK +E+++PEL+T DS TQ VG
Sbjct: 8 QIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELVTADSPTQRVGARP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-KNIEYIAELKFDGIAVNLRY 135
+ H M+SLDN FSDE+ F KRI + L L + + + E K DG+AV++ Y
Sbjct: 68 LSEFAQIRHEIPMLSLDNAFSDEEFFAFVKRIQDRLALVPEPLTFCCEPKLDGLAVSILY 127
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
G L QA+TRGDG GE+IT NI I IPL L PP LEVR EV + F +LN
Sbjct: 128 VNGVLSQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPHAGFERLN 187
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
+ G K F NPRNAAAG LRQL+PKI + L A+ +G G+++P +H E L W
Sbjct: 188 ERALEHGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYSIGIAEGVDLPPTHFERLQW 247
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ +G+ + E + G+ ++ FY+ I KR +L Y+IDG V KIN ++ Q++LGF S+
Sbjct: 248 LKSVGIPVNNEIRLCDGIENVLNFYRSIMAKRSSLGYDIDGTVLKINDIALQQRLGFISK 307
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A+AYKF ++E T++ + QIGRTG +TPVA L+PV + G+T+ ATLHN EI
Sbjct: 308 APRWAIAYKFPAEEVRTRLLDVEFQIGRTGAVTPVAKLEPVSVGGVTVCNATLHNNDEIK 367
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
R I IGD V++ R+G+VIP++ + + + I P CP+C+S II IE +AR
Sbjct: 368 RLGISIGDIVLIRRAGDVIPQVIKLVHKAKKGNKPIV-FPTHCPVCDSLIIRIEGEAVAR 426
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++ L R
Sbjct: 427 CTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLDLTTLTR 485
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L+R+ K A N L +++K+K T +RFI+ALGIR VGE TA LAN+FK LE + A E
Sbjct: 486 LERMGPKSAENALTSLEKAKNATLARFIFALGIRDVGEATALNLANHFKTLEALQNADLE 545
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--------NP--------- 598
QL +P +G F + + ++ L G++W NP
Sbjct: 546 QLQQVPDVGEVVANRIFVFWREAHNVAVVEDLIAQGVHWETVEVQEVKENPFKDKTVVLT 605
Query: 599 ---------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +S T+Y++ G+ G KL KA +L +++L E+ F+
Sbjct: 606 GTLSQMGRNDAKALLQQLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFL 665
>gi|405354298|ref|ZP_11023678.1| DNA ligase [Chondromyces apiculatus DSM 436]
gi|397092541|gb|EJJ23299.1| DNA ligase [Myxococcus sp. (contaminant ex DSM 436)]
Length = 672
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 275/675 (40%), Positives = 399/675 (59%), Gaps = 43/675 (6%)
Query: 10 NFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLT 69
+F K + R EL +EL HN YY+ D+P +SD +YD+L+ EL+ +E K+P+L T DS T
Sbjct: 3 DFQKAAARARELHRELAHHNYRYYVLDSPEVSDAQYDKLMRELQDLEAKHPDLQTPDSPT 62
Query: 70 QHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGI 129
Q VG E V H M+SL N F D+ +I F++RI +L I Y+ E K DG+
Sbjct: 63 QRVGGAAAEEFGEVVHRAPMLSLANLFEDQGLIEFDERI-RKLVGQPAITYVCEPKLDGL 121
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYP------PELLEVRCE 183
A+ LRYE G Q +TRGDG GE++TTN+ I +P+ L +P PE+LEVR E
Sbjct: 122 AIALRYEKGAFVQGATRGDGTTGEDVTTNLRTIRSLPMTL---FPQDGVKVPEVLEVRGE 178
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
V I KKDF KLN+ R G F NPRNAAAG LRQL+PK + L F + G+
Sbjct: 179 VFIRKKDFQKLNEKREEEGEPLFANPRNAAAGSLRQLDPKETATRPLSVFLYECVPTEGV 238
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
+H E L + + +GL +Y + G+ + Y R LP+E+DG+V K++
Sbjct: 239 PAFKTHVEKLEYLKTLGLP-TNQYRLAEGLEGVRGAYDASLKGRHELPFEVDGMVVKVDD 297
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
+K+LG S++PR+A+AYKF +E T+++ I IQ+GRTG +TPVA LKPV + G+T+
Sbjct: 298 EDQRKRLGQVSKSPRWAVAYKFPPEEESTEVQDIGIQVGRTGALTPVAHLKPVKVGGVTV 357
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
RATLHNE E+ RK+++ GDTV V R+G+VIP+I S +LS RP DS F+ P CP+CN+
Sbjct: 358 ARATLHNEDELRRKDVRKGDTVFVRRAGDVIPEIVSVVLSKRPADSAPFEFPKHCPVCNA 417
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
E I RC+G+ C AQ ++HF+SR AM+I GLG K+ +LV V T
Sbjct: 418 VATKDEDGAIIRCTGA--SCPAQLVEKIRHFASRLAMDIEGLGDKLAAQLVATGRVKTFA 475
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DLY ++ + LL L+R+ +K A+N++ A+++SK TT RF+YALGIRHVG+ TAK LA F
Sbjct: 476 DLYALDREKLLSLERMGDKSADNLVTALERSKQTTQRRFLYALGIRHVGDATAKALAEAF 535
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI------YWLNN 597
E +FKA+ E + + +G + F +P ++ I +L G+
Sbjct: 536 PEAELLFKASLEDVSRVKDVGPIMAQVIHTFFQEPQNQAAIRELLAAGVKPAAPQVATGG 595
Query: 598 P------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLN 633
P +GGKV +S+ T+++V G+ G KL+KA +L
Sbjct: 596 PFVGKSVVLTGAMTGMTREQAKEEVERRGGKVAGSVSRKTDFVVAGEDAGSKLKKAQELG 655
Query: 634 IKILDEKNFVKIVKG 648
++ILDE+ F+++++G
Sbjct: 656 VRILDEQAFLQMLQG 670
>gi|422013676|ref|ZP_16360295.1| NAD-dependent DNA ligase LigA [Providencia burhodogranariea DSM
19968]
gi|414102714|gb|EKT64305.1| NAD-dependent DNA ligase LigA [Providencia burhodogranariea DSM
19968]
Length = 671
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 272/661 (41%), Positives = 392/661 (59%), Gaps = 36/661 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
LK++L H Y++ D P I D +YD+L+ ELK IE +PE +T DS TQ VG
Sbjct: 10 LKQQLRHHEYQYHVLDAPEIPDAQYDKLMQELKSIEADHPEWITNDSPTQRVGAAPLAAF 69
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
V H M+SLDN F +E + F+KR+ + LK + + ELK DG+AV+L YE G L
Sbjct: 70 DTVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKNHQEQTFCCELKLDGLAVSLLYENGEL 129
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
QA+TRGDG +GENIT+N+ I IPL L P +E+R EV + +K F LN
Sbjct: 130 VQAATRGDGTVGENITSNVRTIRAIPLRLKGGNIPARVEIRGEVFMPQKGFEALNDEARR 189
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIG 260
+G K F NPRNAAAG LRQL+P+I + L F+ +GVG + G +P +H E L ++ G
Sbjct: 190 IGGKIFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGETLPDTHYERLMQFKAWG 249
Query: 261 LSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFA 320
L + + G +++FY +I R L ++IDGVV KIN ++TQ+ LGF SRAPR+A
Sbjct: 250 LPVSDYVQLRKGHQAVLDFYHEIEKIRPTLGFDIDGVVIKINDIATQEALGFVSRAPRWA 309
Query: 321 LAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQ 380
A+KF ++E +T +K + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R +
Sbjct: 310 TAFKFPAQEQMTLLKDVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIERLGVH 369
Query: 381 IGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSW 440
IGDTV++ R+G+VIP+I S + S RP DS+ P CP+C S + +E +ARC+G
Sbjct: 370 IGDTVIIRRAGDVIPQIVSVVESERPADSREIIFPTHCPVCGSDVERVEGEAVARCTGGL 429
Query: 441 IECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS 500
I C AQRK L+HF SR+AM++ G+G K+I++LV V T +LY+++ L LDR+
Sbjct: 430 I-CGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPAELYQLSAGILTGLDRMG 488
Query: 501 NKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNI 560
K A N++ A++KSK TT +RFIYALGIR VGE TA LA ++ LE + A EE L ++
Sbjct: 489 PKSAQNLVDALEKSKSTTLARFIYALGIREVGEATASNLAAHYGTLEAVMAADEESLKSV 548
Query: 561 PKIGSTTVKAFIKFINQPLHRLLISQLRD-VGIYW----------LNNPNTK-------- 601
IG K + F + ++ +I L D I+W +++P
Sbjct: 549 QDIGHVVAKHVVNFFREEHNQTVIKDLVDKANIHWPQAIAVQISEIDSPFAGKTVVLTGS 608
Query: 602 ----------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
G KV +SK T+ ++ G+ G KL KA +L I+++DE +++
Sbjct: 609 MSQLTRDEAKDKLVALGAKVSGSVSKKTDVVIAGEAAGSKLAKANELGIQVIDENELIRL 668
Query: 646 V 646
+
Sbjct: 669 L 669
>gi|156973609|ref|YP_001444516.1| NAD-dependent DNA ligase LigA [Vibrio harveyi ATCC BAA-1116]
gi|166216277|sp|A7MT54.1|DNLJ_VIBHB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|156525203|gb|ABU70289.1| hypothetical protein VIBHAR_01312 [Vibrio harveyi ATCC BAA-1116]
Length = 670
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 275/664 (41%), Positives = 393/664 (59%), Gaps = 34/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ ELK+ LH H + YY+ DNP I D +YD+++ EL IE ++PEL+T DS + VG
Sbjct: 8 RLEELKESLHYHAVRYYVEDNPEIPDAEYDRMMRELLDIEAEHPELVTVDSPSLRVGGQP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F D ++ F+KR + + +Y E K DG+AV+L YE
Sbjct: 68 LSEFSQVTHEVPMLSLDNAFDDAELDGFHKRAQDRVVGHTIKQYCCEPKLDGLAVSLLYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I IPL L K P LEVR EV + K F KLN+
Sbjct: 128 NGVLVQAATRGDGTTGENITENVRTISAIPLKLQGKGWPTRLEVRGEVFMPKAGFDKLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I ++ L F+A+ VG + G + +SH E
Sbjct: 188 NARKKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVEGATLANSHYERFLQI 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL +C E + + ++ +Y+ I +R L YEIDGVV K++ ++ Q++LGF +RA
Sbjct: 248 KSWGLPMCPETKRVDSLEEVKAYYQDILTRREALAYEIDGVVIKVDDIAIQERLGFVARA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+P+ + G+T++ ATLHN EI R
Sbjct: 308 PRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHNADEIER 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
+ +GD VV+ R+G+VIP++ S I RP ++ P+ CP+C S + IE + RC
Sbjct: 368 LQVMVGDQVVIRRAGDVIPQVVSVIKERRPETAREILFPDACPVCGSHVERIEGEAVTRC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++ L L
Sbjct: 428 TGGLV-CQAQRKEALKHFVSRKALDVDGLGDKVIEQLVDREMVETPADLFKLSAGVLTVL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++KSKLTT RF+Y+LGIR VGE TA LA YFKNL+ + +ATEEQ
Sbjct: 487 ERMGPKSATNVVNALEKSKLTTLPRFLYSLGIREVGEATAANLAQYFKNLDAIQQATEEQ 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L+ + IG K F + ++ ++ L GI W
Sbjct: 547 LIEVQDIGVIVAKHITTFFGEEKNQAVVQDLLAQGINWPEIAAPQEGVELPLEGKTVVLT 606
Query: 595 -----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
L K G KV +SK T+ L G+ G KL KA +L I+I E++ +
Sbjct: 607 GTLSQLGRSEAKEALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIQTEQDLL 666
Query: 644 KIVK 647
++K
Sbjct: 667 NLMK 670
>gi|392536236|ref|ZP_10283373.1| NAD-dependent DNA ligase [Pseudoalteromonas arctica A 37-1-2]
Length = 672
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 268/667 (40%), Positives = 396/667 (59%), Gaps = 34/667 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S +S +V L+ L +HN YY+ D P I D++YD+LL EL +E ++PE LT DS TQ
Sbjct: 3 SSISEQVNHLRTTLEQHNYNYYVLDTPSIPDSEYDRLLRELSALETEHPEFLTADSPTQK 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + V H M+SLDN FS+E+ FN+RI L T + + E K DG+AV
Sbjct: 63 VGGAALSKFEQVAHQVPMLSLDNAFSEEEFTAFNRRIKERLMSTDELTFCCEPKLDGLAV 122
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
++ Y G L QA+TRGDG GENIT N+ I +PL L YP EL EVR EV + F
Sbjct: 123 SIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKEL-EVRGEVFMDSAGF 181
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN G K F NPRNAAAG LRQL+ KI + L F+A+ G + ++P H +
Sbjct: 182 EKLNTEAQKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIPEDHYQ 241
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
L GL +C E ++ G +E+Y I +R L YEIDGVV KIN + Q++LG
Sbjct: 242 QLEKLTDWGLPLCPETKLVEGPKAALEYYSDILTRRGELKYEIDGVVIKINKKTLQERLG 301
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+AYKF ++E +T++ ++ Q+GRTG ITPVA LKPV + G+T++ ATLHN
Sbjct: 302 FVARAPRWAIAYKFPAQEEITQLLDVDFQVGRTGAITPVARLKPVFVGGVTVSNATLHNS 361
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
E+ R +++GDTV++ R+G+VIP+IT +L RP+D++ + P CPIC+S + +E
Sbjct: 362 DEVARLGVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFPTTCPICDSHVEKVEGE 421
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC+G + C AQRK ++HF+SRKA++I GLG K++++LV+ ++ T DL+ +
Sbjct: 422 AVARCTGGLV-CPAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPADLFILKQG 480
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L+R+ K A N++ A++++K TT ++F+Y+LGIR GE TA+ LAN+F LE +
Sbjct: 481 HFESLERMGPKSAKNLVTALEEAKGTTLAKFLYSLGIREAGEATAQNLANHFLTLENVIN 540
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNPNTK-------- 601
A+ + L + +G F ++ + +++ L D G+ W L+ P+ +
Sbjct: 541 ASIDSLTQVSDVGEIVAAHVRGFFDEEHNLAVVNALIDQGVNWPALSAPSEEEQPLAGLT 600
Query: 602 ----------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
G KV +S T+ LV G+K G KL KA L I IL E
Sbjct: 601 YVLTGTLNTLNRNDAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDILTE 660
Query: 640 KNFVKIV 646
++++
Sbjct: 661 DELIELL 667
>gi|345300295|ref|YP_004829653.1| DNA ligase [Enterobacter asburiae LF7a]
gi|345094232|gb|AEN65868.1| DNA ligase [Enterobacter asburiae LF7a]
Length = 671
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 265/664 (39%), Positives = 395/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++T+L+ L H Y++ D P I D +YD+L+ EL+++E ++PE +T DS TQ VG
Sbjct: 7 QLTQLRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQHPERITPDSPTQRVGAEP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDTLSWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+ITTN+ I IPL L + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVRAATRGDGTTGEDITTNVRTIRAIPLKLRGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I + L FF +GVG L G +P +H L +
Sbjct: 187 EARRTGGKVFANPRNAAAGSLRQLDSRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + + ++ FY K+ R L ++IDGVV K+N L Q++LGF +RA
Sbjct: 247 REWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLELQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + + S R +D++ + P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVESERLDDTRAIEFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + KAT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEKATLDE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F + +R +I +L + GI W
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNREVIGKLLEEGIKWPAPVVVNAEEIDSPFAGKTVVL 605
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ + K G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 LRLL 669
>gi|262394922|ref|YP_003286776.1| DNA ligase [Vibrio sp. Ex25]
gi|262338516|gb|ACY52311.1| DNA ligase [Vibrio sp. Ex25]
Length = 690
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 276/663 (41%), Positives = 392/663 (59%), Gaps = 34/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ ELK+ LH H + YY+ DNP I D +YD+L+ EL IE + P+L+T DS +Q VG
Sbjct: 28 RLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITVDSPSQRVGGQP 87
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F D ++ F+KR + EY E K DG+AV+L YE
Sbjct: 88 LSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQERVGSQSVKEYCCEPKLDGLAVSLLYE 147
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I IPL L P LEVR EV + K F KLN+
Sbjct: 148 NGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRGEVFMPKAGFEKLNE 207
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I ++ L F+A+ VG ++G + +SH E
Sbjct: 208 LARKKGEKIFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGAELAASHYERFLQI 267
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL +C E + + + +Y+ I +R LPYEIDGVV KI+ ++ Q++LGF +RA
Sbjct: 268 KSWGLPMCPETKRVESLADVKAYYQDILQRRDALPYEIDGVVIKIDDIAVQERLGFVARA 327
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 328 PRWAIAYKFPAQEEMTTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIER 387
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ S I RP ++ P CP+C S + IE + RC
Sbjct: 388 LQVKIGDHVVIRRAGDVIPQVVSVIKERRPETARDIIFPTQCPVCGSHVERIEGEAVTRC 447
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++ L L
Sbjct: 448 TGGLV-CQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDREMVKTPADLFKLSAGILTVL 506
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A NI+ A++KSK TT RF+Y+LGIR VGE TA LA +FK LE + A EEQ
Sbjct: 507 DRMGPKSAQNIVNALEKSKETTLPRFLYSLGIREVGEATAANLAMHFKTLEAIQNANEEQ 566
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------- 601
L+ + IG+ + F ++ ++ ++ L + GI+W T+
Sbjct: 567 LIEVQDIGAVVAQHITTFFSEEQNQAVVKDLLEQGIHWPEINTTEQVGELPLEGKTVVLT 626
Query: 602 ------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +SK T+ L G+ G KL KA +L I+I E++ +
Sbjct: 627 GTLSQLGRTEAKEALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLL 686
Query: 644 KIV 646
+++
Sbjct: 687 ELM 689
>gi|422009322|ref|ZP_16356305.1| NAD-dependent DNA ligase LigA [Providencia rettgeri Dmel1]
gi|414093140|gb|EKT54812.1| NAD-dependent DNA ligase LigA [Providencia rettgeri Dmel1]
Length = 672
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 270/664 (40%), Positives = 395/664 (59%), Gaps = 36/664 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ ELKK+L H Y++ D P I D +YD+L+ LK+IE ++PEL+T DS TQ VG
Sbjct: 7 IDELKKQLRHHEYQYHVLDAPEIPDVEYDKLMQRLKEIEAQHPELVTSDSPTQRVGAAPL 66
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
V H M+SLDN F +E + F+KR+ + LK + + + ELK DG+AV+L YE
Sbjct: 67 AAFDTVRHEIPMLSLDNVFDEESYLAFDKRVRDRLKNHQELTFCCELKLDGLAVSLLYEN 126
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L QA+TRGDG +GENIT N+ I IPL L P+ +E+R EV + +K F LN+
Sbjct: 127 GELVQAATRGDGTVGENITANVRTIRAIPLRLTGSNIPDRVEIRGEVFMPQKGFEALNEQ 186
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
K F NPRNAAAG LRQL+P+I + L F+ +GVG + G ++P +H + L ++
Sbjct: 187 ARKTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGGSLPDTHYDRLMQFK 246
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
GL + + G +++FY +I R +L ++IDGVV K+N ++ Q++LGF SRAP
Sbjct: 247 AWGLPVSDYVQLRVGHQAVLDFYHEIEQVRPDLGFDIDGVVIKVNSIAIQEELGFVSRAP 306
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A A+KF ++E +T +K + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 RWATAFKFPAQEQVTLLKDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLHNADEIERL 366
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
+ IGDTV++ R+G+VIP+I S ++ RP DS+ P CP+C S I IE +ARC+
Sbjct: 367 GVHIGDTVIIRRAGDVIPQIVSVVVDNRPADSREIVFPTHCPVCGSDIERIEGEAVARCT 426
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DLY+++ L LD
Sbjct: 427 GGLI-CGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVKTPADLYQLSAGILTGLD 485
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+ K A N++ A+ KSK TT +RFIYALGIR VGE TA LA ++ L+ + A E L
Sbjct: 486 RMGPKSAQNLVDALNKSKQTTLARFIYALGIREVGEATAANLAAHYTTLDAVMAADEVSL 545
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQ-LRDVGIYW----------LNNPNTK----- 601
+ IG K + F +P ++ +I L I+W +++P
Sbjct: 546 KTVQDIGHVVAKHVVNFFREPHNQAVIEDLLTKANIHWPEVKVVNSAEIDSPFAGKTVVL 605
Query: 602 -------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSMSILTRDEAKDKLVALGAKVSGSVSKKTDLVIAGEAAGSKLAKANELGIRVIDENEL 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|166215832|sp|Q5ZWX6.2|DNLJ_LEGPH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
Length = 673
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 269/663 (40%), Positives = 404/663 (60%), Gaps = 35/663 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ LK+++ +++ YY+ D P++ D +YD+ L++ EE+YP+ L+ DS TQ V
Sbjct: 10 IETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSPTQRVSGTPS 69
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ +++ F KR +L + + + + E K DG+AVN+ YE
Sbjct: 70 DAFMPVAHKQPMLSLSNVFTTDELKAFIKRAIEKLDEPNQQLVFACEPKLDGLAVNMTYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG +GENIT NI I +PL L + PP+L+EVR EV I K DF N
Sbjct: 130 GGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIPKADFEAYNA 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
LG K F NPRNAAAG LRQLNP+I+ ++ L + +G+G +P+SH E LN
Sbjct: 190 RARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDYKLPNSHLEQLNLL 249
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ G + E GV +++Y+ + KR LP+EIDGVVYKI+ +S Q++LG+ SRA
Sbjct: 250 KEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQQQLGYVSRA 309
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PRFA A+KF + E +T++ A++ Q+GRTG +TPVA L+PV + G+T++ ATLHN EI R
Sbjct: 310 PRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNATLHNFDEITR 369
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGDTV++ R+G+VIP++ S IL RP ++++ ++P CP+C S+++ IARC
Sbjct: 370 KDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMIELPKNCPVCGSEVVREADEAIARC 429
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
G + C AQ K + HF+SRKAM I GLG +I++LV+ IV DLY+++ + L L
Sbjct: 430 VGG-LYCKAQLKRMMWHFASRKAMYIEGLGSVLIDQLVDEGIVHHLADLYELDLQTLANL 488
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
R+ K A N+L A++KSK TTF+RF+YALGIR +GE A+ LA ++ ++E + AT E+
Sbjct: 489 PRMGEKSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVESLKAATIEE 548
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------LNNPN---------- 599
L+ + IG + F Q + +I +L ++GI+W +N N
Sbjct: 549 LMTLNDIGPVAASHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLT 608
Query: 600 ----------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +S T+Y+V G + G KL KA +L + I++E F+
Sbjct: 609 GTLSTMGREEAKAKLLALGAKVSGSVSSKTDYVVAGSEAGSKLIKATELGVAIIEEDEFL 668
Query: 644 KIV 646
K V
Sbjct: 669 KWV 671
>gi|52841193|ref|YP_094992.1| DNA ligase [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|378776911|ref|YP_005185348.1| DNA ligase [Legionella pneumophila subsp. pneumophila ATCC 43290]
gi|52628304|gb|AAU27045.1| DNA ligase [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|364507725|gb|AEW51249.1| DNA ligase [Legionella pneumophila subsp. pneumophila ATCC 43290]
Length = 683
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 271/678 (39%), Positives = 408/678 (60%), Gaps = 35/678 (5%)
Query: 3 FHAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPEL 62
F +N + + LK+++ +++ YY+ D P++ D +YD+ L++ EE+YP+
Sbjct: 5 FWESSLMNDQGIKESIETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQF 64
Query: 63 LTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYI 121
L+ DS TQ V + V H M+SL N F+ +++ F KR +L + + + +
Sbjct: 65 LSPDSPTQRVSGTPSDAFMPVAHKQPMLSLSNVFTTDELKAFIKRAIEKLDEPNQQLVFA 124
Query: 122 AELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVR 181
E K DG+AVN+ YE G L A+TRGDG +GENIT NI I +PL L + PP+L+EVR
Sbjct: 125 CEPKLDGLAVNMTYEGGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVR 184
Query: 182 CEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELR 241
EV I K DF N LG K F NPRNAAAG LRQLNP+I+ ++ L + +G+G
Sbjct: 185 GEVYIPKADFEAYNARARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACE 244
Query: 242 GMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKI 301
+P+SH E LN ++ G + E GV +++Y+ + KR LP+EIDGVVYKI
Sbjct: 245 DYKLPNSHLEQLNLLKEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKI 304
Query: 302 NCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGI 361
+ +S Q++LG+ SRAPRFA A+KF + E +T++ A++ Q+GRTG +TPVA L+PV + G+
Sbjct: 305 DSISLQQQLGYVSRAPRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGV 364
Query: 362 TITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPIC 421
T++ ATLHN EI RK+I+IGDTV++ R+G+VIP++ S IL RP ++++ ++P CP+C
Sbjct: 365 TVSNATLHNFDEITRKDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMIELPKNCPVC 424
Query: 422 NSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVT 481
S+++ IARC G + C AQ K + HF+SRKAM I GLG +I++LV+ IV
Sbjct: 425 GSEVVREADEAIARCVGG-LYCKAQLKRMMWHFASRKAMYIEGLGSVLIDQLVDEGIVHH 483
Query: 482 AVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELAN 541
DLY+++ + L L R+ K A N+L A++KSK TTF+RF+YALGIR +GE A+ LA
Sbjct: 484 LADLYELDLQTLANLPRMGEKSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAE 543
Query: 542 YFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------- 594
++ ++E + AT E+L+ + IG + F Q + +I +L ++GI+W
Sbjct: 544 HYCDVESLKAATIEELMTLNDIGPVAASHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQ 603
Query: 595 LNNPN--------------------------TKGGKVVNFISKNTNYLVKGQKPGKKLEK 628
+N N G KV +S T+Y+V G + G KL K
Sbjct: 604 VNQQNPFFGKTVVLTGTLSTMGREEAKAKLLALGAKVSGSVSSKTDYVVAGSEAGSKLIK 663
Query: 629 AIKLNIKILDEKNFVKIV 646
A +L + I++E F+K V
Sbjct: 664 ATELGVAIIEEDEFLKWV 681
>gi|378697325|ref|YP_005179283.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae 10810]
gi|301169841|emb|CBW29445.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae 10810]
Length = 670
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 272/666 (40%), Positives = 395/666 (59%), Gaps = 34/666 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++ L+K L ++ Y++ D+P + D++YD+L +LK +E ++PE LT DS TQ
Sbjct: 1 MTNIQTQLDNLRKTLRQYEYEYHVLDHPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGI 129
VG + H M+SLDN FSD + F RI + L L K + + E K DG+
Sbjct: 61 RVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVNRIEDRLILLPKPLTFCCEPKLDGL 120
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G L QA+TRGDG GE+IT NI I +PL L PP LEVR EV +
Sbjct: 121 AVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHA 180
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LNKY K F NPRNAAAG LRQL+P I + L A+G+G G+++P++H
Sbjct: 181 GFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDLPTTH 240
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
L W + IG+ + E + +G ++++ FY+ I KR +L Y+IDG V KIN ++ Q +
Sbjct: 241 YARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIALQNE 300
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF S+APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 301 LGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 360
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R NI IGDTVV+ R+G+VIP+I + RP+++K P CP+C+S+II IE
Sbjct: 361 NGDEIERLNIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIE 420
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++
Sbjct: 421 GEAVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLD 479
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L RL+R+ K A N L +++ +K TT +RFI+ALGIR VGE TA LAN+FK L+ +
Sbjct: 480 LTTLTRLERMGAKSAENALNSLENAKSTTLARFIFALGIREVGEATALNLANHFKTLDTL 539
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
A E+L +P +G F + + ++ L G++W
Sbjct: 540 KDANLEELQQVPDVGEVVANRIFIFWREAHNVAVVEDLIAQGVHWETVEVKEASENLFKD 599
Query: 595 ----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L T+ G KV +S T++++ G G KL KA +LNI +L
Sbjct: 600 KTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGSKLAKAQELNITVL 659
Query: 638 DEKNFV 643
E+ F+
Sbjct: 660 TEEEFL 665
>gi|375111281|ref|ZP_09757492.1| NAD-dependent DNA ligase [Alishewanella jeotgali KCTC 22429]
gi|374568823|gb|EHR39995.1| NAD-dependent DNA ligase [Alishewanella jeotgali KCTC 22429]
Length = 684
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 267/673 (39%), Positives = 401/673 (59%), Gaps = 47/673 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+++L ++N YY+ D P + D +YD+L EL+++E+++PEL+T DS TQ VG G
Sbjct: 13 QIAQLRRQLEQYNYQYYVLDAPSVPDAEYDRLYRELQQLEQQHPELITADSPTQRVG--G 70
Query: 77 GENSKY--VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLR 134
+K+ V H M+SLDN F D D F KR+ + L + + AE K DG+AV++R
Sbjct: 71 APLAKFSQVSHQVPMLSLDNAFDDSDFQAFVKRMQDRLDFAGDFSFCAEPKLDGLAVSIR 130
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194
YE+G L QA+TRGDG+ GE+IT NI I IPL L + PP +LEVR EV + F +L
Sbjct: 131 YEHGVLVQAATRGDGSTGEDITANIRTIRAIPLRLTGEVPP-VLEVRGEVFMPLSGFERL 189
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSS------ 248
N G K F NPRNAAAG LRQL+P + + L F+A+ VG++ + P S
Sbjct: 190 NNDAKARGEKVFANPRNAAAGSLRQLDPAVTAKRPLMFYAYAVGQV---DDPESRLNNRC 246
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
H + L + GL +C E ++ G + +Y++I KR LPYEIDGVV K++ L+ Q+
Sbjct: 247 HYQRLQQLKDWGLPVCPEIRLVEGTAAALSYYQQILAKRAALPYEIDGVVIKVSNLAQQQ 306
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
LGF +RAPR+A+A+KF ++E LT + ++ Q+GRTG ITPVA L+PV + G+ ++ ATL
Sbjct: 307 ALGFVARAPRWAIAFKFPAQEMLTTLLDVDFQVGRTGAITPVARLEPVNVGGVMVSNATL 366
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYI 428
HN+ EI R +QIGD V+V R+G+VIP+I + + RP +K P CP+C S + +
Sbjct: 367 HNQDEINRLGVQIGDKVIVRRAGDVIPQIVAVVTEQRPAQTKPVIFPEACPVCGSAVERV 426
Query: 429 ESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488
+ARCSG + C AQ K L+HF SRKA++I GLG K++E+LV +V T ++ +
Sbjct: 427 SGEAVARCSGG-LYCAAQLKESLKHFVSRKALDIEGLGDKLVEQLVEQQLVKTPDAIFDL 485
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
+ +L+ L+R+ K A +L AI+ +K TT RFIYALGIR VGE TA LAN+F +L+
Sbjct: 486 DMPSLVGLERMGEKSALKLLNAIKAAKSTTLPRFIYALGIREVGEATALNLANHFASLDA 545
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------- 594
+ A+ EQLL + +G+ + F +P ++ ++S L G++W
Sbjct: 546 LMAASIEQLLEVSDVGTVVAEHLYHFFREPHNQQVVSALLAQGLHWPAIAQQQVTEQPLS 605
Query: 595 ------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
+ K G KV +S T+ ++ G+ G KL KA +L + +
Sbjct: 606 GQTIVLTGTLSSMGRDEAKALLQRLGAKVSGSVSAKTHAVIAGENAGSKLAKASELQVPV 665
Query: 637 LDEKNFVKIVKGF 649
DE+ + + K +
Sbjct: 666 WDEQQMLDLFKQY 678
>gi|157371681|ref|YP_001479670.1| NAD-dependent DNA ligase LigA [Serratia proteamaculans 568]
gi|190359284|sp|A8GHF2.1|DNLJ_SERP5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|157323445|gb|ABV42542.1| DNA ligase, NAD-dependent [Serratia proteamaculans 568]
Length = 673
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 261/666 (39%), Positives = 397/666 (59%), Gaps = 37/666 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P + D +YD+L+ EL+ +E +PEL+T DS TQ VG
Sbjct: 7 QINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMGELRALESAHPELITADSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F +E + F KR+ + LK + + + ELK DG+AV+L YE
Sbjct: 67 LAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKSSDPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT+N+ I IPL L P LEVR EV + + F ++N+
Sbjct: 127 DGELVRAATRGDGTTGENITSNVRTIRAIPLRLTGDNIPRRLEVRGEVFMPQAGFEQMNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
K F NPRNAAAG +RQL+P+I + L FF +GVG L G +P SH + L +
Sbjct: 187 EARRKDGKIFANPRNAAAGSIRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHWQRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + +G ++++ FY+++ R L ++IDGVV KI+ + Q+ LGF +RA
Sbjct: 247 KDWGLPVSDRAKRCTGSDEVLAFYRQVEQDRTQLGFDIDGVVVKIDDIDLQETLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T+++ + Q+GRTG ITPVA L+PVL+ G+ ++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVLVAGVIVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIP++ I RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDTVIVRRAGDVIPQVVGVIAERRPADAREILFPQHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+IE+LV V DL++++ L L
Sbjct: 427 TGGLI-CAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKEYVKNPADLFRLSAGILTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++KSK TTF+RF+YALGIR VGE TA LA +F L+ + A E
Sbjct: 486 DRMGPKSAQNLVNALEKSKQTTFARFLYALGIREVGEATAANLAAHFGTLDKLLAADIEA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL--RDVGIYW----------LNNP------ 598
L +P++G K F+++ L++ +I +L ++GI W +++P
Sbjct: 546 LKEVPEVGEIVAKHTRHFLDEELNQQVIQELVSDEIGINWPAPVVIVAEEIDSPFAGKTV 605
Query: 599 ------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 VLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIEVIDEA 665
Query: 641 NFVKIV 646
++++
Sbjct: 666 EMIRLL 671
>gi|409203474|ref|ZP_11231677.1| NAD-dependent DNA ligase [Pseudoalteromonas flavipulchra JG1]
Length = 672
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 255/662 (38%), Positives = 403/662 (60%), Gaps = 33/662 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
+V L+++L +N YY+ DNP + D +YD+++ +L +E+++PEL + DS +Q VG
Sbjct: 8 QVAALRQQLEDYNYQYYVLDNPSVPDAEYDRVMRQLMTLEQQHPELQSPDSPSQKVGGEA 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F + + FN+R+ L +K++ + E K DG+AV++ Y
Sbjct: 68 LSKFEQVTHRVPMLSLDNAFDESEFTAFNRRLKERLLTSKDVTFCCEPKLDGLAVSILYR 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG +GENIT N+ I IPL L ++ P +EVR EV + FIKLN+
Sbjct: 128 DGVLVQAATRGDGQVGENITENVKTIRNIPLKLRGEHIPHEVEVRGEVFMDTAGFIKLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ KI + L F+A+ +G + G + + H L
Sbjct: 188 TAQAKGDKTFANPRNAAAGSLRQLDSKITAKRPLMFYAYSMGLVEGGELANEHYAQLQQL 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
Q GL + E ++ + + +Y+ I +R LPYEIDGVV K+N + Q++LGF +RA
Sbjct: 248 QGWGLPMSPETKLVDNAQQALAYYQDIMTRRAELPYEIDGVVIKVNDKAQQEQLGFVARA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 308 PRWAIAFKFPAQEEITQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNGDEIAR 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIP++T +L RP+D+K + P+ CP+C+S + +E +ARC
Sbjct: 368 LGVKIGDTVIVRRAGDVIPQVTQVVLDRRPDDAKEIEFPDTCPVCDSHVERVEGEAVARC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK ++HF+SRKA++I GLG K++E+LV ++ T DL+ + + L
Sbjct: 428 TGGLV-CRAQRKEAIKHFASRKALDIDGLGDKIVEQLVERELIKTPADLFILRQGHFESL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++++K TT ++F+Y+LGIR VGE TA+ LAN+F LE + A+ +
Sbjct: 487 ERMGPKSAKNLVAALEEAKQTTLAKFLYSLGIREVGEATAQNLANHFLTLEKVMAASIDT 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L + +G + F + ++ +++ L +VG+ W
Sbjct: 547 LQQVSDVGVVVAQHIHSFFAEQHNQEVVTALIEVGVTWQDVAAPSEDTQPLAGLTYVLTG 606
Query: 595 ----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
LN + K G KV +SKNT+ + G+K G KL KA +L +++ DE+ +
Sbjct: 607 TLGQLNRNDAKARLQALGAKVAGSVSKNTDAVYAGEKAGSKLTKAQELGVEVFDEEALIA 666
Query: 645 IV 646
++
Sbjct: 667 LL 668
>gi|148360390|ref|YP_001251597.1| DNA ligase [Legionella pneumophila str. Corby]
gi|166215817|sp|A5IFV1.1|DNLJ_LEGPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|148282163|gb|ABQ56251.1| DNA ligase [Legionella pneumophila str. Corby]
Length = 673
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 270/663 (40%), Positives = 402/663 (60%), Gaps = 35/663 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ LK+++ +++ YY+ D P++ D +YD+ L++ EE+YP+ L+ DS TQ V
Sbjct: 10 IETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSPTQRVSGTPS 69
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ +++ F KR +L + + + + E K DG+AVN+ YE
Sbjct: 70 DAFMPVAHKQAMLSLSNVFTTDELKAFIKRAIEKLDEPNQQLVFACEPKLDGLAVNMTYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG +GENIT NI I +PL L + PP+L+EVR EV I K DF N
Sbjct: 130 GGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIPKADFEAYNA 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
LG K F NPRNAAAG LRQLNP+I+ ++ L + +G+G +P+SH E LN
Sbjct: 190 RARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDYKLPNSHLEQLNLL 249
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ G + E GV +++Y+ + KR LP+EIDGVVYKI+ +S Q++LG+ SRA
Sbjct: 250 KEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQQQLGYVSRA 309
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PRFA A+KF + E +T++ A++ Q+GRTG +TPVA L+PV + G+T++ ATLHN EI R
Sbjct: 310 PRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNATLHNFDEITR 369
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I IGDTV++ R+G+VIP++ S IL RP +++ ++P CP+C S+++ IARC
Sbjct: 370 KDIHIGDTVIIRRAGDVIPEVVSVILEKRPANARKIELPKNCPVCGSEVVREADEAIARC 429
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
G + C AQ K + HF+SRKAM I GLG +I++LV+ IV DLY+++ + L L
Sbjct: 430 VGG-LYCKAQLKRMMWHFASRKAMYIEGLGSVLIDQLVDEGIVHHLADLYELDLQTLANL 488
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
R+ K A N+L A++KSK TTF+RF+YALGIR +GE A+ LA ++ ++E + AT E+
Sbjct: 489 PRMGEKSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVESLKAATIEE 548
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------LNNPN---------- 599
L+ + IG + F Q + +I +L ++GI+W +N N
Sbjct: 549 LMTLNDIGPVAASHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLT 608
Query: 600 ----------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +S T+YLV G + G KL KA +L + I++E F+
Sbjct: 609 GTLSTMGREEAKAKLLALGAKVSGSVSSKTDYLVAGSEAGSKLVKATELGVAIIEEDEFL 668
Query: 644 KIV 646
K V
Sbjct: 669 KWV 671
>gi|238799224|ref|ZP_04642672.1| DNA ligase [Yersinia mollaretii ATCC 43969]
gi|238716921|gb|EEQ08789.1| DNA ligase [Yersinia mollaretii ATCC 43969]
Length = 670
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 259/664 (39%), Positives = 397/664 (59%), Gaps = 36/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P I D +YD+L+ +L+ +E ++PEL+T DS TQ VG
Sbjct: 7 QINQLRTSLRHHEHQYHVLDAPEIPDAEYDRLMQQLRDLEAQHPELITSDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SLDN F +E + F+KR+ + LK + + + ELK DG+AV+L YE
Sbjct: 67 LDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKRAEPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT N+ I IPL L P +EVR EV + + F +LN
Sbjct: 127 EGELVRAATRGDGTTGENITANVRTIRAIPLRLQGDNIPRRVEVRGEVFMPQAGFEQLND 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SH + L +
Sbjct: 187 EARRKGGKVFANPRNAAAGSLRQLDPRITAKRRLAFFCYGVGLLDGGELPRSHIQRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +G ++I FY+++ R +L ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 KAWGLPVSHRVKLCTGSEQVIAFYRQVEQDRASLGFDIDGVVIKVDDLDLQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T+++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIP++ ++ RP D++ P CP+C S I +E +ARC
Sbjct: 367 LGLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDAQEILFPEHCPVCGSDIERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SR+A+++ G+G K+IE+LV V DL+++ L L
Sbjct: 427 TGGLF-CAAQRKEALKHFVSRRALDVEGMGDKIIEQLVEKQYVENPADLFELTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N+++A+ K+K TTF+RF+YALGIR VGE TA LA +F+N+ + A +
Sbjct: 486 DRMGPKSAQNLIVALDKAKQTTFARFLYALGIREVGEATAANLAAHFRNMANLRAADIDA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L ++P +G K + F+++ ++ +I L V I W +++P
Sbjct: 546 LKSVPDVGEVVAKHVLNFLSEEHNQKVIEALEKV-ISWPEPQQIIAEEIDSPFAGKTVVL 604
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 605 TGSLTILSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEM 664
Query: 643 VKIV 646
++++
Sbjct: 665 IRLL 668
>gi|357039994|ref|ZP_09101785.1| DNA ligase [Desulfotomaculum gibsoniae DSM 7213]
gi|355357357|gb|EHG05133.1| DNA ligase [Desulfotomaculum gibsoniae DSM 7213]
Length = 674
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 267/665 (40%), Positives = 404/665 (60%), Gaps = 40/665 (6%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ +L++E+ +HN YY+ D P I+D +YD+L+ +L+++E +YP L+T DS TQ VG
Sbjct: 12 IDKLRREIEQHNYRYYVLDAPTITDTQYDRLMADLQQMEREYPFLVTPDSPTQRVGGKPR 71
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
E V HT M+SL N F D ++I F++R+ L ++ +Y+ ELK DG+AV+L Y+
Sbjct: 72 EGFATVQHTIAMLSLANAFGDAELIEFDRRVRGTLG-NESYDYVVELKIDGLAVSLTYQD 130
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L + +TRGDG GE+IT N+ I IPL L+ P +LLEVR EV + KK FI+LN+
Sbjct: 131 GILVRGATRGDGATGEDITVNLKTIRSIPLRLH--KPVDLLEVRGEVYMPKKSFIELNRR 188
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPSSHSELLNW 255
R G F NPRNAAAG LRQL+P + + L F +G+G EL G +P SHSE L W
Sbjct: 189 REERGEPLFANPRNAAAGSLRQLDPAVTAGRNLSIFVYGIGAAELPGEGLPESHSESLKW 248
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ +GL + + + + ++I + + K+ LPY+IDG+V K+N L Q LG T +
Sbjct: 249 LESLGLRVNTHHQLCRDIGEVISYCRIWQDKKAALPYQIDGMVIKVNSLDQQSALGATMK 308
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
+PR+A+A+KF ++A T ++ I + +GRTG+ITP ALL PV + G T++RATLHNE I
Sbjct: 309 SPRWAIAFKFPPEQAQTIVRDIIVSVGRTGVITPTALLDPVSVAGSTVSRATLHNEDIIR 368
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
K+I+IGD V++H++G+VIP++ + R K+F +P CP C ++++ + R
Sbjct: 369 EKDIRIGDRVIIHKAGDVIPEVVEVLKDHRTGGEKMFSMPVECPACGAEVVRLSGEAAHR 428
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G+ C AQ GL HF+SR AM+I GLG ++ +LV A +V DLY + + LLR
Sbjct: 429 CTGA--ACPAQLLEGLIHFASRGAMDIAGLGPAVVTQLVEAGLVGDVSDLYNLTVEQLLR 486
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L+R ++K A N++ AI+ SK R I+ALGIRHVGE A+ LA +F +L + A E
Sbjct: 487 LERFADKSAENLVRAIEASKENPLHRLIFALGIRHVGERAARVLAEHFGDLRRLMDADCE 546
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI----------------------- 592
+L+ I +IG ++ I F+ +P +R LI +L + G+
Sbjct: 547 ELIAIMEIGPKIAESVINFMREPQNRALIERLIEHGVNVVAEAAPAAGSGGPLIGKTLVL 606
Query: 593 ----YWLNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L K GGKV + +SK T+Y+V G+ PG K EKA+KL ++++ E++
Sbjct: 607 TGTLAALKRDEAKELIEKVGGKVSSSVSKKTDYVVAGENPGSKYEKAVKLGVQVIGEEDL 666
Query: 643 VKIVK 647
+ +VK
Sbjct: 667 LDLVK 671
>gi|90021526|ref|YP_527353.1| DNA ligase [Saccharophagus degradans 2-40]
gi|123090491|sp|Q21JI8.1|DNLJ_SACD2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|89951126|gb|ABD81141.1| DNA ligase, NAD-dependent [Saccharophagus degradans 2-40]
Length = 674
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 266/662 (40%), Positives = 396/662 (59%), Gaps = 32/662 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ LK +++ HN YY+ D P + D +YD+L EL+ IE+++PEL+T+DS TQ VG
Sbjct: 10 KLESLKNQINYHNKLYYVLDAPELPDAEYDKLFQELQAIEQQFPELVTEDSPTQRVGAAP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
++ + H M+SLDN F+ E++ F+KRI + + ++EY E KFDGIA +L YE
Sbjct: 70 LDSFASIEHKRPMLSLDNVFNVEELFAFDKRIRDRINADASLEYSCEPKFDGIAASLLYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G LK A+TRGDG +GE+IT N+ I +PL L P +LEVR EV + K F+++N+
Sbjct: 130 NGRLKTAATRGDGTVGEDITQNMRTIGSVPLKLEGNNIPAVLEVRGEVYMPKAGFLRINE 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
K F NPRNAAAG LRQLNP+I + L F A+ VG + G +P++H E L
Sbjct: 190 EALAKNEKTFVNPRNAAAGSLRQLNPQITAKRPLVFCAYNVGVVEGGELPATHYETLTQL 249
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ G + E + G+ + +Y + KR +L Y+IDG+V+K+N Q++LGF SRA
Sbjct: 250 FEWGFLVSEERRIAKGIEECEAYYHYLEAKRESLAYDIDGIVFKVNAFDLQERLGFVSRA 309
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++EALT + + Q+GRTG ITPVA L+P+ + G+T++ ATLHN+ EI R
Sbjct: 310 PRWAIAHKFPAQEALTVLHDVEFQVGRTGAITPVAKLQPIFVGGVTVSNATLHNKDEIER 369
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
I++GDTV+V R+G+VIP+I S + S RP D++ K P CP+C S + +E RC
Sbjct: 370 LGIRVGDTVIVRRAGDVIPQIVSIVESKRPQDAREIKFPTACPVCGSDVESVEGEAAIRC 429
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK ++HF+SR+AM+I GLG K++++LV+ +V DLY ++ L L
Sbjct: 430 TGGLV-CEAQRKESIKHFASRQAMDIDGLGDKIVDQLVDNKLVNDVADLYTLDIPTLAGL 488
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ AI+ SK T+ + +YALGIR VG TA+ LAN+F L + AT+EQ
Sbjct: 489 ERLGAKSAANLVAAIEASKQTSLDKILYALGIREVGRATARNLANHFCTLNKVMDATQEQ 548
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L+ + +G + F Q +R +I +L G+ W
Sbjct: 549 LIEVTDVGPVVAHYVVDFFAQANNREVIEKLIAAGVNWPDIEKVDGVKPLEGTTYVLTGS 608
Query: 595 ---LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
L+ K G KV +S T +V G G KL KA KL + ILDE + +
Sbjct: 609 LESLSRDEAKDKLQALGAKVSGSVSAKTTCVVAGPGAGSKLAKAEKLGLAILDEVGLLAL 668
Query: 646 VK 647
++
Sbjct: 669 LE 670
>gi|212710592|ref|ZP_03318720.1| hypothetical protein PROVALCAL_01658 [Providencia alcalifaciens DSM
30120]
gi|422017514|ref|ZP_16364079.1| NAD-dependent DNA ligase LigA [Providencia alcalifaciens Dmel2]
gi|212686673|gb|EEB46201.1| hypothetical protein PROVALCAL_01658 [Providencia alcalifaciens DSM
30120]
gi|414105664|gb|EKT67221.1| NAD-dependent DNA ligase LigA [Providencia alcalifaciens Dmel2]
Length = 678
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 269/674 (39%), Positives = 399/674 (59%), Gaps = 36/674 (5%)
Query: 8 KINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDS 67
K N L+ ++ LK++L H Y++ D P I D +YD+L+ ELK +E ++PEL+T DS
Sbjct: 4 KKNPDALTQKIDALKQQLRHHEYLYHVMDAPEIPDVEYDKLMQELKALEAEHPELITTDS 63
Query: 68 LTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFD 127
TQ VG V H M+SLDN F +E + F+KR+ + L + + ELK D
Sbjct: 64 PTQRVGAAPLAAFDTVRHEIPMLSLDNVFDEESYLAFDKRVKDRLHNHTELTFCCELKLD 123
Query: 128 GIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIY 187
G+AV+L YE G L QA+TRGDG +GENIT N+ I IPL L P +E+R EV +
Sbjct: 124 GLAVSLLYENGELVQAATRGDGTVGENITANVRTIKAIPLRLRGDNIPARVEIRGEVFMP 183
Query: 188 KKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPS 247
+K F +N+ K F NPRNAAAG LRQL+P+I + L F+ +GVG + G +P
Sbjct: 184 QKGFEAMNEEARKTDGKIFANPRNAAAGSLRQLDPRITAKRPLTFYCYGVGLVEGKTLPD 243
Query: 248 SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQ 307
+H E L ++ GL + + G ++++FY + R L ++IDGVV K+N ++ Q
Sbjct: 244 THYERLMQFKAWGLPVSEHVQLRVGCQQVLDFYHHVEKIRPTLGFDIDGVVIKVNDIAIQ 303
Query: 308 KKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRAT 367
++LGF SRAPR+A A+KF ++E +T +K + Q+GRTG ITPVA L+PV + G+ ++ AT
Sbjct: 304 EELGFVSRAPRWATAFKFPAQEQITLLKDVEFQVGRTGAITPVARLEPVQVAGVVVSNAT 363
Query: 368 LHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIY 427
LHN EI R ++IGDTVV+ R+G+VIP+I S ++ RP DS+ P CP+CNS I
Sbjct: 364 LHNADEIDRLGVRIGDTVVIRRAGDVIPQIVSVVMDKRPADSREIIFPTHCPVCNSDIER 423
Query: 428 IESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYK 487
+E +ARC+G + C AQ K L+HF SR+AM++ G+G K+IE+LV+A V A LY+
Sbjct: 424 VEGEAVARCTGG-LTCGAQLKESLKHFVSRRAMDVDGMGDKIIEQLVDAEYVANAAQLYQ 482
Query: 488 INFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLE 547
++ L L+R+ K A ++ A++KSK TT +RFIYALGIR VGE TA LA ++ +L+
Sbjct: 483 LSAGKLTGLERMGPKSAQKLIDALEKSKQTTLARFIYALGIREVGEATAANLAAHYASLD 542
Query: 548 CMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-IYW------------ 594
+ A E+ L + IG K + F + +R +I L + I+W
Sbjct: 543 AVMAADEDSLKTVQDIGEVVAKHVVHFFREEHNRQVIHDLLTIANIHWPEVKVINSAEID 602
Query: 595 ----------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKL 632
L+ + K G KV +SK T+ ++ G+ G KL KA +L
Sbjct: 603 SPFAGKTVVLTGSMSTLSRDDAKDKLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKATEL 662
Query: 633 NIKILDEKNFVKIV 646
IK++DE+ ++++
Sbjct: 663 GIKVIDEEELIRLL 676
>gi|397169974|ref|ZP_10493401.1| NAD-dependent DNA ligase [Alishewanella aestuarii B11]
gi|396088502|gb|EJI86085.1| NAD-dependent DNA ligase [Alishewanella aestuarii B11]
Length = 678
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 267/673 (39%), Positives = 398/673 (59%), Gaps = 47/673 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+++L N YY+ D P + D +YD+L EL+++E+++PEL+T DS TQ VG G
Sbjct: 7 QIAQLRRQLEHFNYQYYVLDAPSVPDAEYDRLYRELQQLEQQHPELITADSPTQRVG--G 64
Query: 77 GENSKY--VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLR 134
+K+ V H M+SLDN F D D + F KR+ + L + + AE K DG+AV++R
Sbjct: 65 APLAKFSQVSHQVPMLSLDNAFDDSDFLSFVKRMQDRLDFAGDFSFCAEPKLDGLAVSIR 124
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194
YE+G L QA+TRGDG+ GE+IT NI I IPL L+ + PP +LEVR EV + F +L
Sbjct: 125 YEHGVLVQAATRGDGSTGEDITANIRTIRAIPLRLSGEVPP-VLEVRGEVFMPLSGFERL 183
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSS------ 248
N G K F NPRNAAAG LRQL+P + + L F+A+ VG+L + P +
Sbjct: 184 NNDAKARGEKVFANPRNAAAGSLRQLDPAVTAKRPLMFYAYAVGQL---DDPQTLLNNRC 240
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
H + L + GL +C E ++ G + +Y++I KR LPYEIDGVV K + L+ Q+
Sbjct: 241 HYQRLQQLKDWGLPVCPEIRLVEGTAAALSYYQQILAKRAALPYEIDGVVIKASNLAQQQ 300
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
LGF +RAPR+A+A+KF ++E LT + ++ Q+GRTG ITPVA L+PV + G+ ++ ATL
Sbjct: 301 ALGFVARAPRWAIAFKFPAQEMLTTLLDVDFQVGRTGAITPVARLEPVNVGGVMVSNATL 360
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYI 428
HN+ EI R +QIGD V+V R+G+VIP+I + + RP +K P CP+C S + +
Sbjct: 361 HNQDEINRLGVQIGDKVIVRRAGDVIPQIVAVVTEQRPAQTKPVIFPEACPVCGSAVERV 420
Query: 429 ESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488
+ARCSG + C AQ K L+HF SRKA++I GLG K++E+LV +V T ++ +
Sbjct: 421 SGEAVARCSGG-LYCAAQLKESLKHFVSRKALDIEGLGDKLVEQLVEQQLVTTPDAIFDL 479
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
+ +L+ L+R+ K A +L AI+ +K TT RFIYALGIR VGE TA LAN+F L+
Sbjct: 480 DMPSLVGLERMGEKSALKLLNAIKAAKSTTLPRFIYALGIREVGEATALNLANHFATLDA 539
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------- 594
+ A EQLL + +G+ + F +P ++ ++S L G++W
Sbjct: 540 LMAAEMEQLLAVSDVGTVVAEHLYHFFREPHNQQVVSALLAQGLHWPAIALQQVTEQPLS 599
Query: 595 ------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
+ K G KV +S T+ ++ G+ G KL KA +L + +
Sbjct: 600 GQTIVLTGTLSSMGRDEAKALLQRLGAKVSGSVSAKTHAVIAGENAGSKLAKASELQVPV 659
Query: 637 LDEKNFVKIVKGF 649
DE+ + + K +
Sbjct: 660 WDEQQMLDLFKQY 672
>gi|417828827|ref|ZP_12475378.1| DNA ligase, NAD-dependent [Shigella flexneri J1713]
gi|335574682|gb|EGM61000.1| DNA ligase, NAD-dependent [Shigella flexneri J1713]
Length = 647
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 263/645 (40%), Positives = 392/645 (60%), Gaps = 35/645 (5%)
Query: 36 DNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNG 95
D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG + H M+SLDN
Sbjct: 2 DAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAPLAAFSQIRHEVPMLSLDNV 61
Query: 96 FSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENI 155
F +E + FNKR+ + LK + + + ELK DG+AV++ YE G L A+TRGDG GE+I
Sbjct: 62 FDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDI 121
Query: 156 TTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAG 215
T+N+ I IPL L+ + P LEVR EV + + F K+N+ G K F NPRNAAAG
Sbjct: 122 TSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAG 181
Query: 216 ILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNK 275
LRQL+P+I + L FF +GVG L G +P +H L ++K GL + ++ +
Sbjct: 182 SLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQFKKWGLPVSDRVTLCESAEE 241
Query: 276 LIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIK 335
++ FY K+ R L ++IDGVV K+N L Q++LGF +RAPR+A+A+KF ++E +T ++
Sbjct: 242 VLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARAPRWAVAFKFPAQEQMTFVR 301
Query: 336 AINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIP 395
+ Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R ++IGD VV+ R+G+VIP
Sbjct: 302 DVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIP 361
Query: 396 KITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFS 455
++ + +LS RP D++ P CP+C S + +E +ARC+G I C AQRK L+HF
Sbjct: 362 QVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARCTGGLI-CGAQRKESLKHFV 420
Query: 456 SRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSK 515
SR+AM++ G+G K+I++LV V T DL+K+ L L+R+ KLA N++ A++K+K
Sbjct: 421 SRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKLAQNVVNALEKAK 480
Query: 516 LTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575
TTF+RF+YALGIR VGE TA LA YF LE + A+ E+L +P +G F
Sbjct: 481 ETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFF 540
Query: 576 NQPLHRLLISQLRDVGIYW----------LNNP------------------NTK------ 601
+ +R +IS+L G++W +++P + K
Sbjct: 541 AEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVEL 600
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
G KV +SK T+ ++ G+ G KL KA +L I+++DE ++++
Sbjct: 601 GAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 645
>gi|260363295|ref|ZP_05776162.1| DNA ligase (NAD+) [Vibrio parahaemolyticus K5030]
gi|308113593|gb|EFO51133.1| DNA ligase (NAD+) [Vibrio parahaemolyticus K5030]
Length = 655
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 272/655 (41%), Positives = 393/655 (60%), Gaps = 34/655 (5%)
Query: 25 LHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVH 84
+H H + YY+ DNP I D +YD+L+ EL +IE ++P+L+T DS +Q VG V
Sbjct: 1 MHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTVDSPSQRVGGKPLSEFSQVT 60
Query: 85 HTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQAS 144
H M+SLDN F D ++ F+KR + + +Y E K DG+AV+L YE G L QA+
Sbjct: 61 HEVPMLSLDNAFDDSELDSFHKRAQDRIGGESIKQYCCEPKLDGLAVSLLYENGILVQAA 120
Query: 145 TRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLK 204
TRGDG GENIT N+ I+ IPL L P LEVR EV + K F KLN+ G K
Sbjct: 121 TRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGEVFMPKAGFEKLNELARQKGEK 180
Query: 205 KFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSIC 264
F NPRNAAAG LRQL+ +I ++ L F+A+ VG ++G ++ +SH E + GL +C
Sbjct: 181 VFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGADLAASHYERFLQIKSWGLPMC 240
Query: 265 GEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYK 324
E + + + +Y+ I +R LPYEIDGVV KI+ ++ Q++LGF +RAPR+A+AYK
Sbjct: 241 PETKRVDSLADVKTYYQHILQRRDALPYEIDGVVIKIDDIAVQERLGFVARAPRWAIAYK 300
Query: 325 FLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDT 384
F ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R ++IGD
Sbjct: 301 FPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIERLQVKIGDQ 360
Query: 385 VVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECI 444
VV+ R+G+VIP++ S I RP ++ P CP+C S + IE + RC+G + C
Sbjct: 361 VVIRRAGDVIPQVVSVIKERRPETARDIIFPTQCPVCGSHVERIEGEAVTRCTGGLV-CQ 419
Query: 445 AQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLA 504
AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++ L L+R+ K A
Sbjct: 420 AQRKQALKHFVSRKALDVDGLGDKVIEQLVDREMVETPADLFKLSAGVLTVLERMGPKSA 479
Query: 505 NNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIG 564
NI+ A++KSKLTT RF+Y+LGIR VGE TA LA +FK+LE + ATEEQL+ + IG
Sbjct: 480 QNIVNALEKSKLTTLPRFLYSLGIREVGEATAANLAQHFKSLEAIQAATEEQLIAVQDIG 539
Query: 565 STTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNP------------------------ 598
K F + ++ ++ L GI+W ++ P
Sbjct: 540 VVVAKHITTFFEEEQNQAVVQDLLVQGIHWPEVSAPEQGAELPLEGKTVVLTGTLSQLGR 599
Query: 599 -------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
+ G KV +SK T+ L G+ G KL KA +L I+I E++ ++++
Sbjct: 600 TEAKEALQSLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLLELI 654
>gi|397663517|ref|YP_006505055.1| DNA ligase, NAD(+)-dependent [Legionella pneumophila subsp.
pneumophila]
gi|395126928|emb|CCD05111.1| DNA ligase, NAD(+)-dependent [Legionella pneumophila subsp.
pneumophila]
Length = 673
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 269/663 (40%), Positives = 404/663 (60%), Gaps = 35/663 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ LK+++ +++ YY+ D P++ D +YD+ L++ EE+YP+ L+ DS TQ V
Sbjct: 10 IETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSPTQRVSGTPS 69
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ +++ F KR +L + + + + E K DG+AVN+ YE
Sbjct: 70 DAFMPVAHKQPMLSLSNVFTTDELKAFIKRAIEKLDEPNQQLVFACEPKLDGLAVNMTYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG +GENIT NI I +PL L + PP+L+EVR EV I K DF N
Sbjct: 130 GGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIPKADFEAYNA 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
LG K F NPRNAAAG LRQLNP+I+ ++ L + +G+G +P+SH E LN
Sbjct: 190 RARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDYKLPNSHLEQLNLL 249
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ G + E GV +++Y+ + KR LP+EIDGVVYKI+ +S Q++LG+ SRA
Sbjct: 250 KEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQQQLGYVSRA 309
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PRFA A+KF + E +T++ A++ Q+GRTG +TPVA L+PV + G+T++ ATLHN EI R
Sbjct: 310 PRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNATLHNFDEITR 369
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGDTV++ R+G+VIP++ S IL RP ++++ ++P CP+C S+++ IARC
Sbjct: 370 KDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMIELPKNCPVCGSEVVREADEAIARC 429
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
G + C AQ K + HF+SRKAM I GLG +I++LV+ IV DLY+++ + L L
Sbjct: 430 IGG-LYCKAQLKRMMWHFASRKAMYIEGLGSVLIDQLVDEGIVHHLADLYELDLQTLANL 488
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
R+ K A N+L A++KSK TTF+RF+YALGIR +GE A+ LA ++ ++E + AT E+
Sbjct: 489 PRMGEKSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVEGLKAATIEE 548
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------LNNPN---------- 599
L+ + IG + F Q + +I +L ++GI+W +N N
Sbjct: 549 LMTLNDIGPVAASHVVHFFAQAHNLEVIDRLLELGIHWPKSEKIQVNQQNPFFGKTVVLT 608
Query: 600 ----------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +S T+Y+V G + G KL KA +L + I++E F+
Sbjct: 609 GTLSTMGREEAKAKLLALGAKVSGSVSSKTDYVVAGSEAGSKLIKATELGVAIIEEDEFL 668
Query: 644 KIV 646
K V
Sbjct: 669 KWV 671
>gi|54293931|ref|YP_126346.1| DNA ligase [Legionella pneumophila str. Lens]
gi|81368949|sp|Q5WXV3.1|DNLJ_LEGPL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|53753763|emb|CAH15221.1| DNA ligase [Legionella pneumophila str. Lens]
Length = 673
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 268/663 (40%), Positives = 404/663 (60%), Gaps = 35/663 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ LK+++ +++ YY+ D P++ D +YD+ L++ EE+YP+ L+ DS TQ V
Sbjct: 10 IETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSPTQRVSGTPS 69
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ +++ F KR +L + + + + E K DG+AVN+ YE
Sbjct: 70 DAFMPVAHKQPMLSLSNVFTTDELKAFIKRAIEKLDEPNQQLVFACEPKLDGLAVNMTYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG +GENIT NI I +PL L + PP+L+EVR EV I K DF N
Sbjct: 130 GGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIPKADFEAYNA 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
LG K F NPRNAAAG LRQLNP+I+ ++ L + +G+G +P+SH E LN
Sbjct: 190 RARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDYKLPNSHLEQLNLL 249
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ G + E G+ +++Y+ + KR LP+EIDGVVYKI+ +S Q++LG+ SRA
Sbjct: 250 KEFGFRVSPETRRAVGIEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQQQLGYVSRA 309
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PRFA A+KF + E +T++ A++ Q+GRTG +TPVA L+PV + G+T++ ATLHN EI R
Sbjct: 310 PRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNATLHNFDEITR 369
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGDTV++ R+G+VIP++ S IL RP ++++ ++P CP+C S+++ IARC
Sbjct: 370 KDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMIELPKNCPVCGSEVVREADEAIARC 429
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
G + C AQ K + HF+SRKAM I GLG +I++LV+ IV DLY+++ + L L
Sbjct: 430 VGG-LYCKAQLKRMMWHFASRKAMYIEGLGSVLIDQLVDEGIVHHLADLYELDLQTLASL 488
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
R+ K A N+L A++KSK TTF+RF+YALGIR +GE A+ LA ++ ++E + AT E+
Sbjct: 489 PRMGEKSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVEGLKAATIEE 548
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------LNNPN---------- 599
L+ + IG + F Q + +I +L ++GI+W +N N
Sbjct: 549 LMTLNDIGPVAASHVVHFFAQAHNLEVIDRLLELGIHWPKSEKIQVNQQNPFFGKTVVLT 608
Query: 600 ----------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +S T+Y+V G + G KL KA +L + I++E F+
Sbjct: 609 GTLSTMGREEAKAKLLALGAKVSGSVSSKTDYVVAGSEAGSKLIKATELGVAIIEEDEFL 668
Query: 644 KIV 646
K V
Sbjct: 669 KWV 671
>gi|359442086|ref|ZP_09231966.1| DNA ligase [Pseudoalteromonas sp. BSi20429]
gi|358036098|dbj|GAA68215.1| DNA ligase [Pseudoalteromonas sp. BSi20429]
Length = 672
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 267/667 (40%), Positives = 396/667 (59%), Gaps = 34/667 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S +S +V L+ L +HN YY+ D P I D++YD+LL EL +E ++PE LT DS TQ
Sbjct: 3 SSISEQVNHLRTTLEQHNYNYYVLDTPSIPDSEYDRLLRELSALETEHPEFLTADSPTQK 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + V H M+SLDN FS+E+ FN+RI L T + + E K DG+AV
Sbjct: 63 VGGAALSKFEQVAHQVPMLSLDNAFSEEEFTAFNRRIKERLMSTDELTFCCEPKLDGLAV 122
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
++ Y G L QA+TRGDG GENIT N+ I +PL L YP EL EVR EV + F
Sbjct: 123 SIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKEL-EVRGEVFMDSAGF 181
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN G K F NPRNAAAG LRQL+ KI + L F+A+ G + ++P H +
Sbjct: 182 DKLNTEAEKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIPEDHYQ 241
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
L GL +C E ++ G +++Y I +R L YEIDGVV KIN + Q++LG
Sbjct: 242 QLEKLTDWGLPLCPETKLVEGPKAALDYYSDILTRRGELKYEIDGVVIKINKKTLQERLG 301
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+AYKF ++E +T++ ++ Q+GRTG ITPVA LKPV + G+T++ ATLHN
Sbjct: 302 FVARAPRWAIAYKFPAQEEITQLLDVDFQVGRTGAITPVARLKPVFVGGVTVSNATLHNS 361
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
E+ R +++GDTV++ R+G+VIP+IT +L RP+D++ + P CPIC+S + +E
Sbjct: 362 DEVARLGVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFPTTCPICDSHVEKVEGE 421
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC+G + C AQRK ++HF+SRKA++I GLG K++++LV+ ++ T DL+ +
Sbjct: 422 AVARCTGGLV-CPAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPADLFILKQG 480
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L+R+ K A N++ A++++K TT ++F+Y+LGIR GE TA+ LAN+F LE +
Sbjct: 481 HFESLERMGPKSAKNLVTALEEAKGTTLAKFLYSLGIREAGEATAQNLANHFLTLENVIN 540
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNPNTK-------- 601
A+ + L + +G F ++ + +++ L D G+ W L+ P+ +
Sbjct: 541 ASIDSLTQVSDVGEIVAAHVRGFFDEEHNLAVVNALIDQGVNWPALSAPSEEEQPLAGLT 600
Query: 602 ----------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
G KV +S T+ LV G+K G KL KA L I IL E
Sbjct: 601 YVLTGTLNTLNRNDAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDILTE 660
Query: 640 KNFVKIV 646
++++
Sbjct: 661 DELIELL 667
>gi|408373415|ref|ZP_11171112.1| NAD-dependent DNA ligase LigA [Alcanivorax hongdengensis A-11-3]
gi|407766872|gb|EKF75312.1| NAD-dependent DNA ligase LigA [Alcanivorax hongdengensis A-11-3]
Length = 777
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 257/609 (42%), Positives = 380/609 (62%), Gaps = 6/609 (0%)
Query: 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG 73
LS +V L+ +L+ + YY+ D+P + D +YD+L ELK +EE +PEL+T DS TQ VG
Sbjct: 7 LSQKVQSLRDQLNNWSYRYYVLDDPAVPDAEYDRLYRELKALEEAHPELVTADSPTQRVG 66
Query: 74 LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNL 133
V + V H M+SLDN F D+D+ F+ RI L ++ I Y+AE K DG+A++L
Sbjct: 67 DVPLDAFDQVQHEVPMLSLDNAFDDDDLRAFDNRIRERLDVSDTIAYVAEPKLDGLAISL 126
Query: 134 RYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIK 193
YE G L +A+TRGDG GENIT N I +PL L PP LEVR EV++ F +
Sbjct: 127 LYENGELVRAATRGDGQTGENITVNARTIRSVPLKLRGDNPPARLEVRGEVVMPHGGFAE 186
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253
LN + G K F NPRNAAAG LRQL+ +I + L F+A+ + +L G P++HS +L
Sbjct: 187 LNARQEAAGQKVFANPRNAAAGSLRQLDSRITAERPLEFYAYSLAQLEGQPWPATHSAIL 246
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
+ + GL + E V GV L+ FY I KR L Y+IDGVVYK++ L Q+ LGF
Sbjct: 247 DALKHWGLRVNPEIRVCEGVEALLAFYHGILDKRDKLDYDIDGVVYKVDRLDWQRDLGFV 306
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
SRAPR+A+A+KF ++E LT + ++ Q+GRTG +TPVA L+PV + G+T++ ATLHN E
Sbjct: 307 SRAPRWAIAHKFPAQEELTVLNGVDWQVGRTGALTPVARLEPVQVGGVTVSNATLHNIDE 366
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
I R +I++GDTVVV+R+G+VIPK+ I RP D++ +P+ CP+C S I+ + ++
Sbjct: 367 IRRLDIRVGDTVVVYRAGDVIPKVVRPIPERRPADAQTISLPSNCPVCGSDILRGDGEVV 426
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
ARC+G I C AQ++ ++HF+SR+AM+I GLG K+++ LV+ ++ T DLY++ +
Sbjct: 427 ARCTGGLI-CGAQQREAIKHFASRRAMDIDGLGDKLVDALVDEGLIATVADLYRLEAARV 485
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
L+R+ K A+N++ A++ SK RF++ALGI +GE TAK LA+ F +L+ + A+
Sbjct: 486 AGLERMGEKSADNLIAALETSKKVGLGRFLFALGILQIGEETAKNLADCFGDLDGIRHAS 545
Query: 554 EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGGKVVNFISKNT 613
LL +P +G +A F + + +I L G+ P + G F+S T
Sbjct: 546 LLLLLAVPDVGLEVARAIGAFFAEADNEAVIDGLLAAGV----TPQSSGQPSAAFVSSLT 601
Query: 614 -NYLVKGQK 621
+L+K K
Sbjct: 602 LAHLLKSAK 610
>gi|319897423|ref|YP_004135620.1| DNA ligase, nad(+)-dependent [Haemophilus influenzae F3031]
gi|317432929|emb|CBY81295.1| DNA ligase, NAD(+)-dependent [Haemophilus influenzae F3031]
Length = 679
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 272/666 (40%), Positives = 394/666 (59%), Gaps = 34/666 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+ + ++ L+K L ++ Y++ DNP + D++YD+L +LK +E ++PE LT DS TQ
Sbjct: 10 MTNIQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQ 69
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGI 129
VG + H M+SLDN FSD + F RI + L L K + + E K DG+
Sbjct: 70 RVGAKPLSGFSQIRHEIPMLSLDNAFSDAEFNAFVNRIEDRLILLPKPLTFCCEPKLDGL 129
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G L QA+TRG+G GE+IT NI I +PL L PP LEVR EV +
Sbjct: 130 AVSILYVNGELTQAATRGNGTAGEDITANIRTIRNVPLQLLTDNPPARLEVRGEVFMPHA 189
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LNKY K F NPRNAAAG LRQL+P I + L A+G+G G+++P++H
Sbjct: 190 GFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDLPTTH 249
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
L W + IG+ + E + +G ++++ FY+ I KR +L Y+IDG V KIN + Q +
Sbjct: 250 YARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIGLQNE 309
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF S+APR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 310 LGFISKAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVAGVTVSNATLH 369
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R NI IGDTVV+ R+G+VIP+I + RP+++K P CP+C+S+II IE
Sbjct: 370 NGDEIERLNIAIGDTVVIRRAGDVIPQIIGVLHERRPDNAKPIIFPTNCPVCDSQIIRIE 429
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARC+G C AQRK L+HF SRKAM+I G+G K+IE+LV+ ++ T DL+K++
Sbjct: 430 GETVARCTGGLF-CAAQRKEALKHFVSRKAMDIDGVGGKLIEQLVDRELIHTPADLFKLD 488
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L RL+R+ K A N L +++ +K TT +RFI+ALGIR VGE TA LAN+FK L+ +
Sbjct: 489 LTTLTRLERMGAKSAENALNSLENAKSTTLARFIFALGIREVGEATALNLANHFKTLDAL 548
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------- 594
A E+L +P +G F + + ++ L G++W
Sbjct: 549 KDANLEELQQVPDVGEVVANRIFIFWREAHNVAVVEDLITQGVHWETVEVKEASENLFKD 608
Query: 595 ----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L T+ G KV +S T++++ G G KL KA +LNI +L
Sbjct: 609 KTVVLTGTLTQMGRNEAKALLQQLGAKVSGSVSSKTDFVIAGDAAGAKLAKAQELNITVL 668
Query: 638 DEKNFV 643
E+ F+
Sbjct: 669 TEEEFL 674
>gi|5733399|gb|AAD49562.1|AF126866_1 NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis]
Length = 672
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 268/667 (40%), Positives = 396/667 (59%), Gaps = 34/667 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S +S +V L+ L +HN YY+ D P I D++YD+LL EL +E ++PE LT DS TQ
Sbjct: 3 SSISEQVNHLRIILEQHNYNYYVLDTPSIPDSEYDRLLRELSALETEHPEFLTADSPTQK 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + V H M+SLDN FS+E+ FN+RI L T + + E K DG+AV
Sbjct: 63 VGGAALSKFEQVAHQVPMLSLDNAFSEEEFTAFNRRIKERLMSTDELTFCCEPKLDGLAV 122
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
++ Y G L QA+TRGDG GENIT N+ I +PL L YP EL EVR EV + F
Sbjct: 123 SIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKEL-EVRGEVFMDSAGF 181
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN G K F NPRNAAAG LRQL+ KI + L F+A+ G + N+P H +
Sbjct: 182 DKLNTEAEKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGNIPEDHYQ 241
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
L GL +C E ++ G + +Y+ I +R L YEIDGVV KIN + Q++LG
Sbjct: 242 QLEKLTDWGLPLCPETKLVEGPKAALAYYRDILTRRSELKYEIDGVVIKINQKTLQERLG 301
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+AYKF ++E +T++ ++ Q+GRTG ITPVA LKPV + G+T++ ATLHN
Sbjct: 302 FVARAPRWAIAYKFPAQEEITQLLDVDFQVGRTGAITPVARLKPVFVGGVTVSNATLHNS 361
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
E+ R +++GDTV++ R+G+VIP+IT +L RP+D++ + P CPIC+S + +E
Sbjct: 362 DEVARLGVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFPTTCPICDSHVEKVEGE 421
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC+G + C AQRK ++HF+SRKA++I GLG K++++LV+ ++ T DL+ +
Sbjct: 422 AVARCTGGLV-CPAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPADLFILKQG 480
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L+R+ K A N++ A++++K TT ++F+Y+LGIR GE TA+ LAN+F LE +
Sbjct: 481 HFESLERMGPKSAKNLVTALEEAKGTTLAKFLYSLGIREAGEATAQNLANHFLTLENVIN 540
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNPNTK-------- 601
A+ + L + +G F ++ + +++ L D G+ W L+ P+ +
Sbjct: 541 ASIDSLTQVSDVGEIVAAHVRGFFDEEHNLAVVNALIDQGVNWPALSAPSEEEQPLAGLT 600
Query: 602 ----------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
G KV +S T+ LV G+K G KL KA L I IL E
Sbjct: 601 YVLTGTLNTLNRNDAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDILTE 660
Query: 640 KNFVKIV 646
++++
Sbjct: 661 DELIELL 667
>gi|397666638|ref|YP_006508175.1| DNA ligase, NAD(+)-dependent [Legionella pneumophila subsp.
pneumophila]
gi|395130049|emb|CCD08282.1| DNA ligase, NAD(+)-dependent [Legionella pneumophila subsp.
pneumophila]
Length = 673
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 269/663 (40%), Positives = 403/663 (60%), Gaps = 35/663 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ LK+++ +++ YY+ D P++ D +YD+ L++ EE+YP+ L+ DS TQ V
Sbjct: 10 IETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSPTQRVSGTPS 69
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ +++ F KR +L + + + + E K DG+AVN+ YE
Sbjct: 70 DAFMPVAHKQPMLSLSNVFTTDELKAFIKRAIEKLDEPNQQLVFACEPKLDGLAVNMTYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG +GENIT NI I +PL L + PP+L+EVR EV I K DF N
Sbjct: 130 GGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIPKADFEAYNA 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
LG K F NPRNAAAG LRQLNP+I+ N+ L + +G+G +P+SH E LN
Sbjct: 190 RARELGEKTFANPRNAAAGSLRQLNPEISANRPLAIYCYGIGACEDYKLPNSHLEQLNLL 249
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ G + E GV +++Y+ + KR LP+EIDGVVYKI+ +S Q++LG+ SRA
Sbjct: 250 KEFGFRVSPETRRAIGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQQQLGYVSRA 309
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PRFA A+KF + E +T++ A++ Q+GRTG +TPVA L+PV + G+T++ ATLHN EI R
Sbjct: 310 PRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNATLHNFDEITR 369
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGDTV++ R+G+VIP++ S IL RP +++ ++P CP+C S+++ IARC
Sbjct: 370 KDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARKIELPKNCPVCGSEVVREADEAIARC 429
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
G + C AQ K + HF+SRKAM I GLG +I++LV+ IV DLY+++ + L L
Sbjct: 430 VGG-LYCKAQLKRMMWHFASRKAMYIEGLGSVLIDQLVDEGIVHHLADLYELDLQTLANL 488
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
R+ K A N+L A++KSK TTF+RF+YALGIR +GE A+ LA ++ ++E + AT E+
Sbjct: 489 PRMGEKSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVESLKSATIEE 548
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------LNNPN---------- 599
L+ + IG + F Q + +I +L ++GI+W +N N
Sbjct: 549 LMTLNDIGPVAASHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLT 608
Query: 600 ----------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +S T+Y++ G + G KL KA +L + I++E F+
Sbjct: 609 GTLSTMGREEAKAKLLALGAKVSGSVSSKTDYVIAGSEAGSKLIKATELGVAIIEEDEFL 668
Query: 644 KIV 646
K V
Sbjct: 669 KWV 671
>gi|296106543|ref|YP_003618243.1| DNA ligase (NAD ) [Legionella pneumophila 2300/99 Alcoy]
gi|295648444|gb|ADG24291.1| DNA ligase (NAD ) [Legionella pneumophila 2300/99 Alcoy]
Length = 673
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 270/663 (40%), Positives = 402/663 (60%), Gaps = 35/663 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ LK+++ +++ YY+ D P++ D +YD+ L++ EE+YP+ L+ DS TQ V
Sbjct: 10 IETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSPTQRVSGTPS 69
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ +++ F KR +L + + + + E K DG+AVN+ YE
Sbjct: 70 DAFMPVAHKQAMLSLSNVFTTDELKAFIKRAIEKLDEPNQQLVFACEPKLDGLAVNMTYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG +GENIT NI I +PL L + PP+L+EVR EV I K DF N
Sbjct: 130 GGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIPKADFEAYNA 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
LG K F NPRNAAAG LRQLNP+I+ ++ L + +G+G +P+SH E LN
Sbjct: 190 RARELGEKIFANPRNAAAGSLRQLNPEISASRPLAIYCYGIGACEDYKLPNSHLEQLNLL 249
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ G + E GV +++Y+ + KR LP+EIDGVVYKI+ +S Q++LG+ SRA
Sbjct: 250 KEFGFRVSPETRRAVGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQQQLGYVSRA 309
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PRFA A+KF + E +T++ A++ Q+GRTG +TPVA L+PV + G+T++ ATLHN EI R
Sbjct: 310 PRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNATLHNFDEITR 369
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I IGDTV++ R+G+VIP++ S IL RP +++ ++P CP+C S+++ IARC
Sbjct: 370 KDIHIGDTVIIRRAGDVIPEVVSVILEKRPANARKIELPKNCPVCGSEVVREADEAIARC 429
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
G + C AQ K + HF+SRKAM I GLG +I++LV+ IV DLY+++ + L L
Sbjct: 430 VGG-LYCKAQLKRMMWHFASRKAMYIEGLGSVLIDQLVDEGIVHHLADLYELDLQTLANL 488
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
R+ K A N+L A++KSK TTF+RF+YALGIR +GE A+ LA ++ ++E + AT E+
Sbjct: 489 PRMGEKSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVESLKAATIEE 548
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------LNNPN---------- 599
L+ + IG + F Q + +I +L ++GI+W +N N
Sbjct: 549 LMTLNDIGPVAASHIVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLT 608
Query: 600 ----------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +S T+YLV G + G KL KA +L + I++E F+
Sbjct: 609 GTLSTMGREEAKAKLLALGAKVSGSVSSKTDYLVAGSEAGSKLVKATELGVAIIEEDEFL 668
Query: 644 KIV 646
K V
Sbjct: 669 KWV 671
>gi|91225892|ref|ZP_01260861.1| DNA ligase [Vibrio alginolyticus 12G01]
gi|91189542|gb|EAS75818.1| DNA ligase [Vibrio alginolyticus 12G01]
Length = 670
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 276/663 (41%), Positives = 391/663 (58%), Gaps = 34/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ ELK+ LH H + YY+ DNP I D +YD+L+ EL IE + P+L+T DS +Q VG
Sbjct: 8 RLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITVDSPSQRVGGQP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F D ++ F+KR + EY E K DG+AV+L YE
Sbjct: 68 LSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQERVGSLSVKEYCCEPKLDGLAVSLLYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I IPL L P LEVR EV + K F KLN+
Sbjct: 128 NGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRGEVFMPKAGFEKLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I ++ L F+A+ VG ++G + +SH E
Sbjct: 188 LARKKGEKIFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGAELAASHYERFLQI 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL +C E + + + +Y+ I +R LPYEIDGVV KI+ ++ Q++LGF +RA
Sbjct: 248 KSWGLPMCPETKRVESLADVKAYYQDILQRRDALPYEIDGVVIKIDDIAVQERLGFVARA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 308 PRWAIAYKFPAQEEMTTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIER 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ S I RP ++ P CP+C S + IE + RC
Sbjct: 368 LQVKIGDHVVIRRAGDVIPQVVSVIKERRPETARDIVFPTQCPVCGSHVERIEGEAVTRC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++ L L
Sbjct: 428 MGGLV-CQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDREMVKTPADLFKLSAGILTVL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A NI+ A++KSK TT RF+Y+LGIR VGE TA LA +FK L + ATEEQ
Sbjct: 487 DRMGPKSAQNIVNALEKSKETTLPRFLYSLGIREVGEATAANLAMHFKTLGAIQNATEEQ 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------- 601
L+ + IG+ + F ++ ++ ++ L + GI+W T+
Sbjct: 547 LIEVQDIGAVVAQHITTFFSEEQNQAVVKDLLEQGIHWPEINTTEQVGELPLEGKTVVLT 606
Query: 602 ------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +SK T+ L G+ G KL KA +L I+I E++ +
Sbjct: 607 GTLSQLGRTEAKEALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLL 666
Query: 644 KIV 646
+++
Sbjct: 667 ELM 669
>gi|329897281|ref|ZP_08272019.1| DNA ligase [gamma proteobacterium IMCC3088]
gi|328921277|gb|EGG28673.1| DNA ligase [gamma proteobacterium IMCC3088]
Length = 674
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 270/661 (40%), Positives = 392/661 (59%), Gaps = 35/661 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL + R++ YY +D P ISD +YDQL EL+ +E + P+ +DS TQ VG
Sbjct: 8 RIAELIALIERYSQEYYEHDAPSISDAEYDQLFRELQTLEVQNPQYARRDSPTQRVGGKP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKL--TKNIEYIAELKFDGIAVNLR 134
E V H M+SLDN FS+++++ F++R L L T I+Y+ E K DGIAV +R
Sbjct: 68 VEGFAPVMHVIPMLSLDNAFSNDELLDFDRRARERLGLLETATIDYVCEPKLDGIAVAIR 127
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194
YE G L QA+TRGDG GE+IT N+ + IPL L+ + LEVR E+ + K+ F +L
Sbjct: 128 YERGMLVQAATRGDGQTGEDITHNVKTVKNIPLQLHGAESIDALEVRGEIFMPKRGFTRL 187
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N+ G K F NPRNAAAG LRQL+P I + L F+ +GVG +G+++P S LL
Sbjct: 188 NQRAEAQGEKTFANPRNAAAGSLRQLDPAITAKRPLAFYCYGVGVTQGVDIPDSQYGLLR 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
WY+ +GL + E +SG+ I++Y++++ +R L Y+IDG+VYK+N L+ Q LGF S
Sbjct: 248 WYESLGLPVNDEVQAVSGIQACIDYYEQLSRRRSGLDYDIDGIVYKVNSLAEQADLGFVS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+A KF ++EALT + + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI
Sbjct: 308 RAPRWAIARKFPAEEALTHLLDVEFQVGRTGAITPVARLEPVSVGGVVVSNATLHNADEI 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
R ++IGD VVV R+G+VIP++ ++ R + + P+ CP+C S I+ E +
Sbjct: 368 DRLQVKIGDLVVVRRAGDVIPQVARALPEERRGELRKIVFPSHCPVCGSAIVREEGEAVQ 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RCSG+ + C AQRK + HF SRKAM+I G G+K++E+LV+ + D+Y + F L
Sbjct: 428 RCSGA-LTCSAQRKGAIIHFVSRKAMDIEGFGEKLVEQLVDIERLKDPSDIYGLTFNELA 486
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
L R+ K A N++ AI +SK TTF+RF+YALGIR VG TTA+ LA+YF ++E + A+
Sbjct: 487 ALPRMGAKSAQNLIDAIDRSKRTTFARFLYALGIREVGVTTAERLADYFGDIESLIAASV 546
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL--------NNP-------- 598
+ LL +P +G F+N H +IS L G+ W N P
Sbjct: 547 DDLLAVPDVGPIVANHIRSFLNSSTHLEVISTLVQAGLSWPEVAPIDVDNAPLVGQTWVV 606
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+ G V +S T L+ G G KL KA L +++++E F
Sbjct: 607 TGKLETFSREEATELLKSLGASVAGSVSNKTTVLLAGPGAGSKLAKAQALGVEVINEDEF 666
Query: 643 V 643
+
Sbjct: 667 L 667
>gi|294635487|ref|ZP_06713972.1| DNA ligase, NAD-dependent [Edwardsiella tarda ATCC 23685]
gi|451966857|ref|ZP_21920105.1| DNA ligase [Edwardsiella tarda NBRC 105688]
gi|291091145|gb|EFE23706.1| DNA ligase, NAD-dependent [Edwardsiella tarda ATCC 23685]
gi|451314241|dbj|GAC65467.1| DNA ligase [Edwardsiella tarda NBRC 105688]
Length = 675
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 258/672 (38%), Positives = 399/672 (59%), Gaps = 38/672 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S + ++ +L+ L H YY+ D P ++D +YD+L+ +LK +E YP+L+T DS +Q
Sbjct: 3 STIEQQLEQLRAALRHHEYQYYVLDEPQVTDAEYDRLMMQLKALESDYPQLVTADSPSQR 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG VHH M+SLDN F +E F+KR+ LK + + ELK DG+AV
Sbjct: 63 VGGAPLAAFGQVHHEVPMLSLDNVFDEESYRAFDKRLHERLKSDAALTFCCELKLDGLAV 122
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L +A+TRGDG+ GE+IT+N+ I IPL L + P+ +EVR EV + + F
Sbjct: 123 SLLYEQGVLVRAATRGDGSTGEDITSNVKTIRAIPLRLQGEDIPDRIEVRGEVFMPQAGF 182
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
+N+ G K F NPRNAAAG LRQL+P+I + L F+ +G G L G +P SH +
Sbjct: 183 EAMNEEARRRGGKIFANPRNAAAGSLRQLDPRITARRPLTFYCYGAGLLEGGTLPGSHYQ 242
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
L ++ GL + G ++++ +Y++ R L ++IDGVV K++ ++TQ+ LG
Sbjct: 243 CLQRFKSWGLPVSERVKRCHGSDEVLAYYRQTEQDRPTLGFDIDGVVIKVDDIATQEALG 302
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A A+KF ++E +T++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 303 FVARAPRWATAFKFPAQEQMTQLNGVEFQVGRTGAITPVARLEPVQVAGVTVSNATLHNA 362
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI R ++IGDTV+V R+G+VIP++ + S RP D+ P CP+C S++ IE
Sbjct: 363 DEIERLGLRIGDTVIVRRAGDVIPQVVGVVESQRPADATEILFPTHCPVCGSEVERIEGE 422
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARCSG I C AQRK L+HF SR+AM++ G+G K+IE+LV V T DLY+++
Sbjct: 423 AVARCSGGLI-CAAQRKESLKHFVSRRAMDVEGMGDKVIEQLVEREYVTTPADLYRLSAG 481
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
L L+R+ K AN ++ A+ +S+ TT +RF++ALGIR VGE TA LA++F +L +
Sbjct: 482 KLTGLERMGPKSANKLIAALDRSRSTTLARFLFALGIREVGEATAANLASHFGSLSALRG 541
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQL--RDVGIYW-----------LNNP 598
A E L ++P++G + F+++ + +I +L ++GI+W +++P
Sbjct: 542 ADLESLKSVPEVGEVVARHIRHFLSEAHNCQVIDELISAEIGIHWPDVTPALQAAEIDSP 601
Query: 599 NTK------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNI 634
G KV +SK T+ ++ G+ G KL KA L I
Sbjct: 602 FAGKTVVLTGSLSVLSRDEAKDRLVALGAKVSGSVSKKTDLVIAGEAAGSKLVKANTLGI 661
Query: 635 KILDEKNFVKIV 646
++DE ++++
Sbjct: 662 TVIDEAQLLQML 673
>gi|312882689|ref|ZP_07742426.1| NAD-dependent DNA ligase LigA [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369650|gb|EFP97165.1| NAD-dependent DNA ligase LigA [Vibrio caribbenthicus ATCC BAA-2122]
Length = 670
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 277/669 (41%), Positives = 403/669 (60%), Gaps = 36/669 (5%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
++ ++ L++ LH H I YY+ DNP I D++YD+L+ EL ++E ++PEL++ DS TQ V
Sbjct: 4 EIETKLNHLRQLLHSHGIKYYVEDNPQIPDSEYDRLMRELLELESQHPELVSLDSPTQRV 63
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIE-YIAELKFDGIAV 131
G + + V H M+SLDN F D+++ F KR+ + L +NI + E K DG+AV
Sbjct: 64 GGKPLDGFESVQHEIPMLSLDNAFDDQELDAFQKRMQDRLG-DENIGLFCCEPKLDGLAV 122
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L QA+TRGDG GENIT N+ I IPL L P +EVR EV + K F
Sbjct: 123 SLLYENGVLIQAATRGDGATGENITENVRTIKSIPLQLQGSNWPARIEVRGEVFMPKAGF 182
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN+ G K F NPRNAAAG LRQL+ KI ++ L F+A+ VG + + SSH E
Sbjct: 183 DKLNQQALKKGEKVFVNPRNAAAGSLRQLDSKITASRPLSFYAYSVGVVEEGELSSSHYE 242
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
+ GL +C E + G++ + +FY+ I +R +L YEIDGVV K++ ++ Q++LG
Sbjct: 243 RFIQLTRWGLPMCPETLQVDGLSAVKDFYQDILNRRDDLAYEIDGVVIKVDNVAVQERLG 302
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+AYKF ++E +T + + Q+GRTG ITPVA LKPV + G+T++ ATLHN
Sbjct: 303 FVARAPRWAIAYKFPAQEEITVLNDVEFQVGRTGAITPVAKLKPVFVGGVTVSNATLHNA 362
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI R + IGD VV+ R+G+VIP+I S +L R + +K P CP+C+S+I ++
Sbjct: 363 DEIERLGVMIGDEVVIRRAGDVIPQIVSVVLERRSDTTKPITFPICCPVCHSEIERLDGE 422
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC+G ++ C AQRK L+HF SRKA+++ GLG+K+IE+LV+ +V T DL+K++
Sbjct: 423 AVARCTGGFV-CQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDRELVSTPADLFKLSPH 481
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
L L+R+ K A N++ A++ SK TT SRF+Y+LGIR VGE TA LA +FK L +
Sbjct: 482 QLSVLERMGPKSAKNVVDALEHSKSTTLSRFLYSLGIREVGEATATNLAKHFKTLANITA 541
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------------- 594
A + L+ + IG K F +Q ++ +I L GI W
Sbjct: 542 APHDALIEVQDIGDIVAKHITAFFSQQQNQTVIDDLLSQGIEWSDIEDNHANTPQVLQGK 601
Query: 595 ----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
LN + K G KV +SK T+ L G+ G KL KA L I+I
Sbjct: 602 VVVLTGSLSQLNRSDAKEALESLGAKVTGSVSKKTDILFAGENAGSKLAKAQDLGIEIRT 661
Query: 639 EKNFVKIVK 647
E++ V +++
Sbjct: 662 EQDLVALIR 670
>gi|336317468|ref|ZP_08572320.1| DNA ligase, NAD-dependent [Rheinheimera sp. A13L]
gi|335878090|gb|EGM76037.1| DNA ligase, NAD-dependent [Rheinheimera sp. A13L]
Length = 676
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 273/669 (40%), Positives = 398/669 (59%), Gaps = 43/669 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ +LK +L HN YY+ DNP I D YD L EL++IE++ PEL+T DS TQ VG
Sbjct: 8 RLQQLKDQLAFHNHQYYVLDNPSIPDADYDLLFQELQQIEQQNPELVTADSPTQRVGAAP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +D F KR+ + + +++ E+ AE K DG+AV++RYE
Sbjct: 68 LSKFGQISHQVAMLSLDNAFDADDFAAFYKRMADRIDASRDFEFCAEPKLDGLAVSIRYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE+IT+N+ I +PL L + P +LEVR EV + F +N
Sbjct: 128 QGLLVQAATRGDGFTGEDITSNVKTIRAVPLKLQGEVP-AVLEVRGEVFMPLAGFEAMND 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPS------SHS 250
G K F NPRNAAAG LRQL+PKI ++ L F+A+ VG M P+ SH
Sbjct: 187 KARAAGDKVFANPRNAAAGSLRQLDPKITASRPLMFYAYAVG---AMEDPAQQLNSKSHY 243
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
L + GL +C E ++G+ +++ + I KR LPYEIDGVV K++ L+ Q+ L
Sbjct: 244 ARLQQLKGWGLPVCPEIRHVTGLQAALDYQQSILTKRSALPYEIDGVVLKVDDLAQQQAL 303
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+A+KF ++E T + + Q+GRTG ITPVA L+PV++ G+T++ ATLHN
Sbjct: 304 GFVARAPRWAIAFKFPAQEKTTTLVDVEFQVGRTGSITPVARLEPVIVGGVTVSNATLHN 363
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
+ EI R +++GDTV+V R+G+VIP+I S +L RP D++ P +CP+C S I +E
Sbjct: 364 QDEINRLGVKVGDTVIVRRAGDVIPQIVSVVLEQRPLDARDILFPTLCPVCQSSIERVEG 423
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARC+G C AQRK L+HF SRKAM+I GLG K+IE+LV+ +V T D+++++
Sbjct: 424 EAVARCTGGLF-CAAQRKEALKHFVSRKAMDIEGLGDKIIEQLVDQQLVKTPADIFRLDM 482
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L+ L+R+ KLA +L +I SK TT RFIY+LGIR VGE TA LA++F L+ +
Sbjct: 483 PALVGLERMGEKLALKLLKSIADSKQTTLPRFIYSLGIREVGEATALNLASHFAALDAVQ 542
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
KA+ EQLL + +G+ + F+ + + +I QL D GI+W
Sbjct: 543 KASLEQLLEVQDVGTVVADNILHFMAEEHNAAVIQQLIDAGIHWPVIEKQQQGEQPLAGL 602
Query: 595 ----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
+ + K G KV +S T ++ G G KL KA +L++ +
Sbjct: 603 TVVLTGTLTSMGRDDAKEKLQRLGAKVSGSVSAKTYAVIAGDNAGSKLAKATELSVPVWT 662
Query: 639 EKNFVKIVK 647
E+ + + +
Sbjct: 663 EQQMLDLFQ 671
>gi|283832193|ref|ZP_06351934.1| DNA ligase, NAD-dependent [Citrobacter youngae ATCC 29220]
gi|291071830|gb|EFE09939.1| DNA ligase, NAD-dependent [Citrobacter youngae ATCC 29220]
Length = 671
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 263/664 (39%), Positives = 394/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD L+ +L+ +E +PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDVEYDLLMHKLQWLEALHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T + + ELK DG+AV++ YE
Sbjct: 67 LTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDKLTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGENIPTRLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 EARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGALPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++ +Y K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVALCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+CNS + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREIVFPQHCPVCNSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+ + L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFTLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF L+ + A+ E+
Sbjct: 486 DRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLDALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL GI+W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNREVIGQLLAQGIHWPAPVVINAEEIDSPFAGKTVVL 605
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 TGSLSLMSRDDAKARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|269968476|ref|ZP_06182487.1| DNA ligase [Vibrio alginolyticus 40B]
gi|269826910|gb|EEZ81233.1| DNA ligase [Vibrio alginolyticus 40B]
Length = 690
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 276/663 (41%), Positives = 391/663 (58%), Gaps = 34/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ ELK+ LH H + YY+ DNP I D +YD+L+ EL IE + P+L+T DS +Q VG
Sbjct: 28 RLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLDIEAENPDLITVDSPSQRVGGQP 87
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F D ++ F+KR + EY E K DG+AV+L YE
Sbjct: 88 LSAFSQVTHEVPMLSLDNAFDDSELDSFHKRAQERVGSQSVKEYCCEPKLDGLAVSLLYE 147
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I IPL L P LEVR EV + K F KLN+
Sbjct: 148 NGVLVQAATRGDGTTGENITENVRTIKAIPLKLRGNDWPNRLEVRGEVFMPKAGFEKLNE 207
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I ++ L F+A+ VG ++G + +SH E
Sbjct: 208 LARKKGEKIFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGAELAASHYERFLQI 267
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL +C E + + + +Y+ I +R LPYEIDGVV KI+ ++ Q++LGF +RA
Sbjct: 268 KSWGLPMCPETKRVESLADVKAYYQDILQRRDALPYEIDGVVIKIDDIAVQERLGFVARA 327
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 328 PRWAIAYKFPAQEEMTTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIER 387
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ S I RP ++ P CP+C S + IE + RC
Sbjct: 388 LQVKIGDHVVIRRAGDVIPQVVSVIKERRPETARDIVFPTQCPVCGSHVERIEGEAVTRC 447
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
G + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++ L L
Sbjct: 448 MGGLV-CQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDREMVKTPADLFKLSAGILTVL 506
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A NI+ A++KSK TT RF+Y+LGIR VGE TA LA +FK L + ATEEQ
Sbjct: 507 DRMGPKSAQNIVNALEKSKETTLPRFLYSLGIREVGEATAANLAMHFKTLGAIQNATEEQ 566
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------- 601
L+ + IG+ + F ++ ++ ++ L + GI+W T+
Sbjct: 567 LIEVQDIGAVVAQHITTFFSEEQNQAVVKDLLEQGIHWPEINTTEQVGELPLEGKTVVLT 626
Query: 602 ------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +SK T+ L G+ G KL KA +L I+I E++ +
Sbjct: 627 GTLSQLGRTEAKEALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIKTEQDLL 686
Query: 644 KIV 646
+++
Sbjct: 687 ELM 689
>gi|261868202|ref|YP_003256124.1| NAD-dependent DNA ligase LigA [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|365967993|ref|YP_004949555.1| NAD-dependent DNA ligase LigA [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|415770845|ref|ZP_11485091.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
D17P-2]
gi|416077255|ref|ZP_11585799.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
serotype b str. SCC1398]
gi|416102669|ref|ZP_11588851.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
serotype c str. SCC2302]
gi|444338468|ref|ZP_21152303.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
serotype b str. SCC4092]
gi|444345858|ref|ZP_21153862.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
serotype c str. AAS4A]
gi|444347693|ref|ZP_21155524.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
serotype b str. S23A]
gi|261413534|gb|ACX82905.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|348004052|gb|EGY44583.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
serotype b str. SCC1398]
gi|348008518|gb|EGY48784.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
serotype c str. SCC2302]
gi|348656626|gb|EGY74236.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
D17P-2]
gi|365746906|gb|AEW77811.1| NAD-dependent DNA ligase LigA [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|443542399|gb|ELT52736.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
serotype c str. AAS4A]
gi|443545026|gb|ELT54896.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
serotype b str. SCC4092]
gi|443548337|gb|ELT57609.1| DNA ligase, NAD-dependent [Aggregatibacter actinomycetemcomitans
serotype b str. S23A]
Length = 670
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 269/665 (40%), Positives = 391/665 (58%), Gaps = 35/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+K L H Y++ D+P I D++YD+L +LK +E+++PEL+T DS TQ VG
Sbjct: 8 QIDDLRKTLRHHEYQYHVLDDPQIPDSEYDRLFHQLKALEQQHPELVTADSPTQRVGARP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-KNIEYIAELKFDGIAVNLRY 135
+ H M+SLDN FS+E+ F KRI + L L + + + E K DG+AV++ Y
Sbjct: 68 LSEFAQIRHEIPMLSLDNAFSNEEFFSFVKRIQDRLALVPEPLTFCCEPKLDGLAVSILY 127
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
G L QA+TRGDG GE+IT NI I IPL L PP LEVR EV + F +LN
Sbjct: 128 VNGVLSQAATRGDGTTGEDITQNIRTIRNIPLQLLTDNPPARLEVRGEVFMPHAGFERLN 187
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
+ G K F NPRNAAAG LRQL+PKI + L A+ +G G+ +P +H E L W
Sbjct: 188 ERALEHGEKTFANPRNAAAGSLRQLDPKITSQRPLMLNAYSIGIAEGVELPPTHFERLQW 247
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ +G+ + E + G+ ++ FY+ I KR +L Y+IDG V KIN ++ Q++LGF S+
Sbjct: 248 LKSVGIPVNNEIQLCDGIENVLNFYRTIMAKRSSLGYDIDGAVLKINDIALQQRLGFISK 307
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A+AYKF ++E T++ + QIGRTG +TPVA L+PV + G+T++ ATLHN EI
Sbjct: 308 APRWAIAYKFPAEEVRTRLLDVEFQIGRTGAVTPVAKLEPVSVGGVTVSNATLHNNDEIK 367
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
R I IGD V++ R+G+VIP++ + + + I P CP+C+S II IE +AR
Sbjct: 368 RLGISIGDIVLIRRAGDVIPQVIKLVHKAKKGNKPIV-FPTHCPVCDSLIIRIEGEAVAR 426
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G C AQRK L+HF SRKAM+I +G K+IE+LV+ ++ T DL+K++ L R
Sbjct: 427 CTGGLF-CAAQRKEALKHFVSRKAMDIDSVGGKLIEQLVDRELIHTPADLFKLDLTTLTR 485
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L+R+ K A N L +++K+K TT +RFI+ALGIR VGE TA LAN+FK LE + A E
Sbjct: 486 LERMGPKSAENALASLEKAKNTTLARFIFALGIRDVGEATALNLANHFKTLEALQNADLE 545
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--------NP--------- 598
QL +P +G F + + ++ L G++W NP
Sbjct: 546 QLQQVPDVGEVVANRIFVFWREAHNVAVVEDLIAQGVHWETVDVQEVKENPFKGKTVVLT 605
Query: 599 ---------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +S T+Y++ G+ G KL KA +L +++L E+ F+
Sbjct: 606 GTLSQMGRNDAKALLQQLGAKVSGSVSAKTDYVIAGEAAGSKLSKAAELGVQVLSEEEFL 665
Query: 644 KIVKG 648
+ G
Sbjct: 666 GWING 670
>gi|417744278|ref|ZP_12392804.1| DNA ligase, NAD-dependent [Shigella flexneri 2930-71]
gi|332766219|gb|EGJ96429.1| DNA ligase, NAD-dependent [Shigella flexneri 2930-71]
Length = 647
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 262/645 (40%), Positives = 392/645 (60%), Gaps = 35/645 (5%)
Query: 36 DNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNG 95
D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG + H M+SLDN
Sbjct: 2 DAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAPLAAFSQIRHEVPMLSLDNV 61
Query: 96 FSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENI 155
F +E + FNKR+ + LK + + + ELK DG+AV++ YE G L A+TRGDG GE+I
Sbjct: 62 FDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDI 121
Query: 156 TTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAG 215
T+N+ I IPL L+ + P LEVR EV + + F K+N+ G K F NPRNAAAG
Sbjct: 122 TSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAG 181
Query: 216 ILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNK 275
LRQL+P+I + L FF +GVG L G +P +H L ++K G+ + ++ +
Sbjct: 182 SLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQFKKWGVPVSDRVTLCESAEE 241
Query: 276 LIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIK 335
++ FY K+ R L ++IDGVV K+N L Q++LGF +RAPR+A+A+KF ++E +T ++
Sbjct: 242 VLAFYHKVEEDRPTLGFDIDGVVIKVNSLEQQEQLGFVARAPRWAVAFKFPAQEQMTFVR 301
Query: 336 AINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIP 395
+ Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R ++IGD VV+ R+G+VIP
Sbjct: 302 DVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIP 361
Query: 396 KITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFS 455
++ + +LS RP D++ P CP+C S + +E +ARC+G I C AQRK L+HF
Sbjct: 362 QVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARCTGGLI-CGAQRKESLKHFV 420
Query: 456 SRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSK 515
SR+AM++ G+G K+I++LV V T DL+K+ L L+R+ KLA N++ A++K+K
Sbjct: 421 SRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKLAQNVVNALEKAK 480
Query: 516 LTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575
TTF+RF+YALGIR VGE TA LA YF LE + A+ E+L +P +G F
Sbjct: 481 ETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFF 540
Query: 576 NQPLHRLLISQLRDVGIYW----------LNNP------------------NTK------ 601
+ +R +IS+L G++W +++P + K
Sbjct: 541 AEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVEL 600
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
G KV +SK T+ ++ G+ G KL KA +L I+++DE ++++
Sbjct: 601 GAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 645
>gi|289165264|ref|YP_003455402.1| DNA ligase [Legionella longbeachae NSW150]
gi|288858437|emb|CBJ12315.1| DNA ligase [Legionella longbeachae NSW150]
Length = 671
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 269/664 (40%), Positives = 397/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
+ LK ++ +++ YY+ D P++ D +YD+ L+ +E ++PELLT DS TQ VG
Sbjct: 9 QAARLKDKIRQYDYHYYVLDEPLVPDVEYDRCFRALQNLEAQHPELLTADSPTQRVGGTP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVNLRY 135
+ V H M+SL N FS+E++ F KR+T +L + + + + E K DG+AVN+ Y
Sbjct: 69 ADAFAPVTHRQPMLSLSNVFSEEELQAFVKRVTEKLDEPAQQLVFTCEPKLDGLAVNITY 128
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
E G L A+TRGDG GENIT NI I IPLVL PP +E+R EV + K F + N
Sbjct: 129 ENGVLVYAATRGDGTTGENITANIKTIAAIPLVLRSNKPPRFIEIRGEVYMPKSGFEQYN 188
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
K LG K F NPRNAAAG LRQLNP + N+ L + +G+G +P++H E L
Sbjct: 189 KKAKELGEKTFANPRNAAAGSLRQLNPAVTANRPLAIYCYGIGACEDYRLPNTHWEQLQL 248
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+++G + E G+ +++Y + +R LP+EIDGVVYK++ ++ Q++LGF SR
Sbjct: 249 LKELGFKVSSESKREVGIKGCLDYYCNMLARRDQLPFEIDGVVYKVDSIALQQQLGFISR 308
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APRFA A+KF + E +T+I A++ Q+GRTG +TPVA L PV + G+T++ ATLHN EI
Sbjct: 309 APRFACAHKFPATEEITEILAVDFQVGRTGALTPVARLAPVNVAGVTVSNATLHNMDEIT 368
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
RK+I+IGD V++ R+G+VIP++ S +L RP D+K +P CP+C+S ++ E +AR
Sbjct: 369 RKDIRIGDKVIIRRAGDVIPEVVSVVLEQRPADTKEICLPLKCPVCDSDVVREEGEAVAR 428
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C G C AQ K + HF+SRKAM+I GLG +IE+LV+ IV DLY+++ L
Sbjct: 429 CIGGLF-CKAQLKRMMWHFASRKAMHIEGLGSVLIEQLVDEGIVRHLPDLYRLDVSTLAN 487
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L R+ K A N+L A++ SK TT SRF+YALGIR +GE +A+ LA +F ++E + ATE
Sbjct: 488 LPRMGEKSAKNLLQALEHSKKTTLSRFLYALGIREIGEASARVLAEHFGDIEAISNATEA 547
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------------- 594
L+++ +G + F Q + +I L ++GI+W
Sbjct: 548 DLMSLEDMGPVGAANIVHFFAQTHNLQVIQHLLELGIHWPKIEKKQQNKEHPLFGKTVVL 607
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ K G KV +S T+Y++ G + G KL+KA L I ILDE+ F
Sbjct: 608 TGTLNTLSREEAKAKLLILGAKVSGSVSAKTDYVIAGIEAGTKLDKANNLGISILDEEQF 667
Query: 643 VKIV 646
+ ++
Sbjct: 668 LHML 671
>gi|269138493|ref|YP_003295193.1| NAD-dependent DNA ligase [Edwardsiella tarda EIB202]
gi|387867204|ref|YP_005698673.1| DNA ligase [Edwardsiella tarda FL6-60]
gi|267984153|gb|ACY83982.1| NAD-dependent DNA ligase [Edwardsiella tarda EIB202]
gi|304558517|gb|ADM41181.1| DNA ligase [Edwardsiella tarda FL6-60]
Length = 675
Score = 520 bits (1339), Expect = e-144, Method: Compositional matrix adjust.
Identities = 253/667 (37%), Positives = 398/667 (59%), Gaps = 38/667 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H YY+ D P ++D +YD+L+ +LK++E ++P L+T DS +Q VG
Sbjct: 8 QLEQLRDALRHHEYQYYVLDEPQVTDAEYDRLMAQLKQLEAEHPALVTADSPSQRVGGAP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
VHH M+SLDN F +E F+KR+ LK + + + E K DG+AV+L YE
Sbjct: 68 LAAFGQVHHEVPMLSLDNVFDEESYQAFDKRLHERLKSGEPLTFCCEPKLDGLAVSLLYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG+ GE+IT N+ I IPL L P +EVR EV + + F +N+
Sbjct: 128 QGMLVRAATRGDGSTGEDITANVKTIRAIPLRLQGVAIPARIEVRGEVFMPQDGFEAMNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L F+ +G G L G +P SH + L +
Sbjct: 188 EARRRGAKIFANPRNAAAGSLRQLDPRITAQRPLTFYCYGSGLLEGGTLPDSHYQCLQRF 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + G +++ +Y++ R L ++IDGVV K++ ++ Q++LGF +RA
Sbjct: 248 KSWGLPVSERVKLCCGSAEVLAYYRQTEQDRPGLGFDIDGVVIKVDDIAIQERLGFVARA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 308 PRWATAFKFPAQEQMTRLNGVEFQVGRTGAITPVARLEPVQVAGVTVSNATLHNADEIER 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
+++IGDTV+V R+G+VIP++ + ++RP D+ P CP+C S++ E +ARC
Sbjct: 368 LDLRIGDTVIVRRAGDVIPQVVGVVEAMRPRDALEIGFPTHCPVCGSEVERTEGEAVARC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG I C AQRK L+HF SR+AM++ G+G K+IE+LV+ V T DLY+++ L L
Sbjct: 428 SGGLI-CAAQRKESLKHFVSRRAMDVEGMGDKVIEQLVDKEYVATPADLYRLSAGKLTGL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A ++ A+++S+ TT +RF++ALGIR VGE TA LA++F +L+ + A E
Sbjct: 487 ERMGPKSATKLIAALERSRETTLARFLFALGIREVGEATAANLASHFGSLQALRAADLES 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL--RDVGIYW-----------LNNP----- 598
L +P++G + F+++ +R +I +L +VGI W +++P
Sbjct: 547 LKRVPEVGEVVASHIVHFLSEAHNRQVIDELISDEVGIRWPEGAPAQSAPAIDSPFAGKT 606
Query: 599 -------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
G KV +SK T+ ++ G+ G KL KA L I+++DE
Sbjct: 607 VVLTGSLSVLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKANALGIEVIDE 666
Query: 640 KNFVKIV 646
++++
Sbjct: 667 AQMLRML 673
>gi|167624496|ref|YP_001674790.1| NAD-dependent DNA ligase [Shewanella halifaxensis HAW-EB4]
gi|190359286|sp|B0TKB2.1|DNLJ_SHEHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|167354518|gb|ABZ77131.1| DNA ligase, NAD-dependent [Shewanella halifaxensis HAW-EB4]
Length = 667
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 262/663 (39%), Positives = 398/663 (60%), Gaps = 38/663 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ +L EL++HN YY+ D+P I D++YD+LL LK +E ++P+ DS TQ VG
Sbjct: 8 IAQLTAELNQHNYRYYVDDSPSIPDSEYDRLLNRLKALETEHPQFCLADSPTQRVGGEAL 67
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
+ + H M+SLDN F +++ FN+RIT++ T +I Y E K DG+AV++ Y
Sbjct: 68 AKFEQIQHLKPMLSLDNVFDEQEFTAFNQRITDK---TGSISYCCEPKLDGLAVSITYRD 124
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G ++A+TRGDG GENIT N+ I IPL L P L+EVR EV++ K F LN+
Sbjct: 125 GVFERAATRGDGQTGENITENVRTIKSIPLRLRGDNFPLLVEVRGEVIMPHKAFDALNER 184
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPSSHSELLNW 255
G K F NPRNAAAG LRQL+ KI ++ L F+A+ +G E + SH L
Sbjct: 185 ARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPESWELADSHYGQLEQ 244
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ G+ + E V V ++IE+Y I +R +L +EIDGVV K+N ++ Q LGF ++
Sbjct: 245 LRSWGVPVSQEVKVCDSVAQVIEYYNDIQQRRSSLEFEIDGVVIKVNQIAHQLSLGFVAK 304
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A A+KF ++E +T ++ ++ Q+GRTG +TPVA LKPV + G+T++ ATLHN EI
Sbjct: 305 APRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIA 364
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
R +++GDT+++ R+G+VIP+I + + RP+D+K P CP+C+S++ +E +AR
Sbjct: 365 RLGVKVGDTIIIRRAGDVIPQIVAVVAEKRPDDAKEISFPARCPVCDSEVERVEGEAVAR 424
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+K+ +
Sbjct: 425 CTGGLF-CEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVQSPADLFKLTASAMTM 483
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L+R+ K A ++ AI +K TTF+RF+YALGIR VGE TA LA YFK L+ + A EE
Sbjct: 484 LERMGMKSATKLVAAIDVAKQTTFARFLYALGIREVGEATAANLAAYFKTLDALKAANEE 543
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------------- 594
+ + +G+ F+ QP + +I +L + G++W
Sbjct: 544 TFIKVDDVGTIVAAHLAHFLAQPHNLEVIDKLIEAGVHWPAIEEVAEEDLSLKGQTWVLT 603
Query: 595 -----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
LN + K G KV +SKNT+ LV G G KL KA +L +K++DE+ +
Sbjct: 604 GTLTQLNRNDAKAKLQLLGAKVAGSVSKNTDCLVAGAAAGSKLAKAQELGVKVIDEEALI 663
Query: 644 KIV 646
I+
Sbjct: 664 AIL 666
>gi|407700008|ref|YP_006824795.1| NAD-dependent DNA ligase [Alteromonas macleodii str. 'Black Sea
11']
gi|407249155|gb|AFT78340.1| NAD-dependent DNA ligase [Alteromonas macleodii str. 'Black Sea
11']
Length = 678
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 256/661 (38%), Positives = 401/661 (60%), Gaps = 35/661 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
+V EL+ L+ +N YY+ D+P + D YD+ + L +E++YP L + +S +Q VG
Sbjct: 11 QVAELRNTLNEYNYQYYVLDDPSVPDAVYDRDMQALIALEKQYPTLQSPNSPSQKVGGKA 70
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F +E ++ F KR+ + LK + +++ E K DG+AV++ YE
Sbjct: 71 LTAFEQVTHDVPMLSLDNAFDEESLLAFEKRLKDRLKDSATLDFSCEPKLDGLAVSILYE 130
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG +GENIT N+ I +PL L ++ PE +EVR EV + ++ F KLN+
Sbjct: 131 NGELVRAATRGDGQVGENITANVRTISNVPLTLRGEHYPERVEVRGEVFMPREGFAKLNE 190
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPSSHSELLN 254
++ G K F NPRNAAAG LRQL+ KI + L F+A+ +G + +P++HSE L
Sbjct: 191 HQKETGGKVFANPRNAAAGSLRQLDSKITAKRPLMFYAYSLGVVQPESFELPTTHSERLK 250
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
GL +C + G + +Y I KR NLPY+IDGVV+K+N + Q LGF +
Sbjct: 251 QLGNWGLPLCPDIDTAEGGKGCLAYYNHILEKRDNLPYDIDGVVFKVNRIDLQNALGFVA 310
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+A KF ++E +TK+ + Q+GRTG ITPVA L+PV + G+T++ ATLHN+ EI
Sbjct: 311 RAPRWAIAQKFPAQEEVTKLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNQDEI 370
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
R +++GDTVV+ R+G+VIP++ S + + R P+ CP+C+S++ +E +A
Sbjct: 371 SRLGVKVGDTVVIRRAGDVIPQVVSVVEADRTGSETDITFPSQCPVCDSQVEKLEDEAVA 430
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+G I C AQRK L+HF+SRKA +I GLG K++++LV+A++V + D + ++ +++
Sbjct: 431 RCTGGLI-CAAQRKQALKHFASRKAFDIDGLGDKLVDQLVDADLVHSPADFFTLSLGDVV 489
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
L+R++ K A+ +L +++ SK TT ++F+YALGIR VGE TA LA +F+ LE + A+
Sbjct: 490 GLERMAEKSASKLLASLESSKQTTLAKFLYALGIREVGEATAANLAAHFETLEAIRDASL 549
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNPNTK----------- 601
E L+ + +G F N+ + +I L G+ W + P++
Sbjct: 550 EALVEVQDVGEVVATHIFNFFNESHNTDVIDALLREGVNWPAIEKPDSDNLPLEGKTCVI 609
Query: 602 -------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SKNT++LV G+K G KL KA +L++++ DE
Sbjct: 610 TGTLSEMGRSDAKARLQLLGAKVAGSVSKNTDFLVAGEKAGSKLTKAQELDVEVWDEAAL 669
Query: 643 V 643
+
Sbjct: 670 I 670
>gi|410861666|ref|YP_006976900.1| NAD-dependent DNA ligase [Alteromonas macleodii AltDE1]
gi|410818928|gb|AFV85545.1| NAD-dependent DNA ligase [Alteromonas macleodii AltDE1]
Length = 678
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 259/661 (39%), Positives = 403/661 (60%), Gaps = 35/661 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
+V EL+ L+ +N YY+ D+P I D YD+ + L +E++YP L + +S +Q VG
Sbjct: 11 KVAELRNTLNEYNYQYYVLDDPSIPDAVYDRDMQSLIALEKQYPSLQSPNSPSQKVGGEA 70
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F +E ++ F KR+ + LK T ++ + E K DG+AV++ YE
Sbjct: 71 LSAFEQVTHDVPMLSLDNAFDEESLLAFEKRLKDRLKDTSSLHFSCEPKLDGLAVSILYE 130
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG +GENIT N+ I +PL L P+ +EVR EV + ++ F KLN+
Sbjct: 131 NGELVRAATRGDGQVGENITANVRTISNVPLRLRGDAHPDRVEVRGEVFMPREGFAKLNE 190
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN--MPSSHSELLN 254
++ + G K F NPRNAAAG LRQL+ KI + L F+A+ +G ++ N +P++HSE L+
Sbjct: 191 HQKNAGGKVFANPRNAAAGSLRQLDSKITAKRPLMFYAYSLGVVQPDNFTLPTTHSERLS 250
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
K GL +C + G +++Y I KR NLPY+IDGVV+K+N + Q LGF +
Sbjct: 251 QLGKWGLPLCPDIDTAEGGRGCLDYYHHILEKRDNLPYDIDGVVFKVNRIDLQAALGFVA 310
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+A KF ++E +TK+ + Q+GRTG ITPVA L+PV + G+T++ ATLHN+ EI
Sbjct: 311 RAPRWAIAQKFPAQEEVTKLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNQDEI 370
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
R +++GDTVV+ R+G+VIP++ S + + R P+ CP+C S++ +E +A
Sbjct: 371 TRLGVKVGDTVVIRRAGDVIPQVVSVVDTKRTGSENDIAFPSQCPVCGSQVEKLEDEAVA 430
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+G I C AQRK L+HF+SRKA +I GLG K++++LV+A++V + D + ++ +++
Sbjct: 431 RCTGGLI-CAAQRKQALKHFASRKAFDIDGLGDKLVDQLVDADLVHSPADFFTLSLGDVV 489
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
L+R++ K A+ +L +++ SK TT ++F+YALGIR VGE TA LA +F+ L+ + A+
Sbjct: 490 GLERMAEKSASKLLSSLEASKQTTLAKFLYALGIREVGEATAANLAAHFETLDAIRDASI 549
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNPNTK----------- 601
E L+ + +G F N+ + +I L GI W + P+
Sbjct: 550 EALVEVQDVGEIVATHIFNFFNESHNTDVIDALLKEGINWPAIEKPDADNLPLEGKTCVI 609
Query: 602 -------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SKNT++LV G+K G KL KA +L++++ DE
Sbjct: 610 TGTLSEMGRSDAKARLQLLGAKVAGSVSKNTDFLVAGEKAGSKLTKAQELDVEVWDEAKL 669
Query: 643 V 643
+
Sbjct: 670 I 670
>gi|392307402|ref|ZP_10269936.1| NAD-dependent DNA ligase [Pseudoalteromonas citrea NCIMB 1889]
Length = 672
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 263/662 (39%), Positives = 395/662 (59%), Gaps = 33/662 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ LK++L HN YY+ DNP I D +YD+L+ EL +E PE LT DS +Q VG
Sbjct: 8 QIQSLKQQLEEHNYQYYVMDNPSIPDAEYDRLMRELMALELANPEYLTVDSPSQKVGGEA 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F + + FN+RI L K +++ E K DG+AV++ Y
Sbjct: 68 LGKFEQVKHQVPMLSLDNAFDEVEFTAFNRRIKERLLENKELDFCCEPKLDGLAVSILYR 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG +GENIT N+ I +PL L K P+ +EVR EV I F +LN+
Sbjct: 128 DGVLVQAATRGDGQVGENITENVKTIRNVPLRLRGKNIPQEVEVRGEVFIDNAGFARLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
K F NPRNAAAG LRQL+ KI + L +A+ +G + G ++P +H L
Sbjct: 188 TAAAKDEKTFANPRNAAAGSLRQLDSKITAKRPLMMYAYSMGVVTGADLPDTHFGQLEQL 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL +C E +++G + +Y+ I +R L YEIDGVV K+N + Q++LGF +RA
Sbjct: 248 KEWGLPMCPETKLVTGAQAALAYYQDIMQRRSELAYEIDGVVIKVNNKAYQQQLGFVARA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T++ + Q+GRTG ITPVA L PV + G+T++ ATLHN EI R
Sbjct: 308 PRWAIAFKFPAQEEITQLLDVEFQVGRTGAITPVARLNPVFVGGVTVSNATLHNRDEIER 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
+++GDTV+V R+G+VIP++T +L RP+ + P+ CP+C+S + +E RC
Sbjct: 368 LGVKVGDTVIVRRAGDVIPQVTQVVLERRPDTVRDITFPDTCPVCDSHVERVEGEATTRC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK ++HFSSRKA++I GLG K++E+LV+ ++ T DL+ + + L
Sbjct: 428 TGGLV-CQAQRKQAIKHFSSRKALDIDGLGDKIVEQLVDRELIHTPADLFILKQGHFESL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++ +K T+ ++F+YALGIR VGE TA+ LAN++ LE + A+ +
Sbjct: 487 ERMGPKSAKNLVAALEDAKTTSLAKFLYALGIREVGEATAQNLANHYLTLEKVSTASIDS 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L + +G + F +P ++ ++S L +VG+ W
Sbjct: 547 LQEVSDVGVIVAQHLHAFFQEPHNQTVVSALLEVGVNWPELADKSTQSQPLDGLTYVLTG 606
Query: 595 ----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
LN + K G KV +SKNT+ LV G+K G KL KA L I ILDE +K
Sbjct: 607 TLTQLNRNDAKARLQALGAKVSGSVSKNTHALVAGEKAGSKLTKAQDLGIDILDENALIK 666
Query: 645 IV 646
++
Sbjct: 667 LL 668
>gi|270159993|ref|ZP_06188649.1| DNA ligase [Legionella longbeachae D-4968]
gi|269988332|gb|EEZ94587.1| DNA ligase [Legionella longbeachae D-4968]
Length = 671
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 269/664 (40%), Positives = 396/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
+ LK ++ +++ YY+ D P++ D +YD+ L+ +E ++PELLT DS TQ VG
Sbjct: 9 QAARLKDKIRQYDYHYYVLDEPLVPDVEYDRCFRALQNLEAQHPELLTADSPTQRVGGTP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVNLRY 135
+ V H M+SL N FS+E++ F KR+T +L + + + + E K DG+AVN+ Y
Sbjct: 69 ADAFAPVTHRQPMLSLSNVFSEEELQAFVKRVTEKLDEPAQQLVFTCEPKLDGLAVNITY 128
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
E G L A+TRGDG GENIT NI I IPLVL PP +E+R EV + K F + N
Sbjct: 129 ENGVLVYAATRGDGTTGENITANIKTIAAIPLVLRSNKPPRFIEIRGEVYMPKSGFEQYN 188
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
K LG K F NPRNAAAG LRQLNP + N+ L + +G+G +P++H E L
Sbjct: 189 KKAKELGEKTFANPRNAAAGSLRQLNPAVTANRPLAIYCYGIGACEDYRLPNTHWEQLQL 248
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+++G + E G+ + +Y + +R LP+EIDGVVYK++ ++ Q++LGF SR
Sbjct: 249 LKELGFKVSSESKREVGIKGCLXYYCNMLARRDQLPFEIDGVVYKVDSIALQQQLGFISR 308
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APRFA A+KF + E +T+I A++ Q+GRTG +TPVA L PV + G+T++ ATLHN EI
Sbjct: 309 APRFACAHKFPATEEITEILAVDFQVGRTGALTPVARLAPVNVAGVTVSNATLHNMDEIT 368
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
RK+I+IGD V++ R+G+VIP++ S +L RP D+K +P CP+C+S ++ E +AR
Sbjct: 369 RKDIRIGDKVIIRRAGDVIPEVVSVVLEQRPADTKEICLPLKCPVCDSDVVREEGEAVAR 428
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C G C AQ K + HF+SRKAM+I GLG +IE+LV+ IV DLY+++ L
Sbjct: 429 CIGGLF-CKAQLKRMMWHFASRKAMHIEGLGSVLIEQLVDEGIVRHLPDLYRLDVSTLAN 487
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L R+ K A N+L A++ SK TT SRF+YALGIR +GE +A+ LA +F ++E + ATE
Sbjct: 488 LPRMGEKSAKNLLQALEHSKKTTLSRFLYALGIREIGEASARVLAEHFGDIEAISNATEA 547
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------------- 594
L+++ +G + F Q + +I L ++GI+W
Sbjct: 548 DLMSLEDMGPVGAANIVHFFAQTHNLQVIQHLLELGIHWPKIEKKQQNKEHPLFGKTVVL 607
Query: 595 ------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
L+ K G KV +S T+Y++ G + G KL+KA L I ILDE+ F
Sbjct: 608 TGTLNTLSREEAKAKLLILGAKVSGSVSAKTDYVIAGIEAGTKLDKANNLGISILDEEQF 667
Query: 643 VKIV 646
+ ++
Sbjct: 668 LHML 671
>gi|307132386|ref|YP_003884402.1| DNA ligase, NAD(+)-dependent [Dickeya dadantii 3937]
gi|306529915|gb|ADM99845.1| DNA ligase, NAD(+)-dependent [Dickeya dadantii 3937]
Length = 683
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 265/679 (39%), Positives = 402/679 (59%), Gaps = 37/679 (5%)
Query: 4 HAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELL 63
+K + S +S ++ L+ +L H Y++ D P I D +YD+L+ LK +E+ +PEL+
Sbjct: 5 ESKPADDISTVSVQIEALRAQLRYHEYKYHVEDAPEIPDAEYDKLMNALKTLEQAHPELV 64
Query: 64 TKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAE 123
T DS TQ VG + + H M+SLDN F + + F+KRI + LK + + E
Sbjct: 65 TPDSPTQRVGATPLDAFDTIAHEVPMLSLDNVFDETSFLAFSKRINDRLKNDGELTFCCE 124
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LK DG+AV+L YE G L +A+TRGDG GENIT NI + IPL L P+ LEVR E
Sbjct: 125 LKLDGLAVSLLYENGLLVRAATRGDGTTGENITANIRTVGAIPLRLRGDNIPQRLEVRGE 184
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
V + K F LN+ G K F NPRNAAAG LRQL+P+I + L F +GVG + G
Sbjct: 185 VFMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITATRPLTFLCYGVGLVEGG 244
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
+P +H + L ++ GL + + +G + +++FY+++ +R L ++IDGVV K+N
Sbjct: 245 ALPDTHWQRLMQFRDWGLPVSDRIRLCTGSDAVLDFYRQVEQERETLGFDIDGVVIKVNE 304
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
L+ Q++LGF +RAPR+A+A+KF ++E LT ++ + Q+GRTG ITPVA L+PV + G+ +
Sbjct: 305 LTLQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVARLEPVAVAGVVV 364
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
+ ATLHN EI R IQIGD V V R+G+VIP+I S +LS RP D++ P CP+C S
Sbjct: 365 SNATLHNADEIERLGIQIGDRVAVRRAGDVIPQIVSVVLSERPADARPVVFPEQCPVCGS 424
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
++ ++ + RC+G C AQRK L+HF SR+A+++ G+G K+I++LV V T
Sbjct: 425 ELERVDGEAVTRCTGGLF-CGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVKTPA 483
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL++++ L LDR+ K A N++ A+ K+K TTF+RF+YALGIR VGE TA LA++F
Sbjct: 484 DLFRLSAGILTGLDRMGPKSAQNLVNALNKAKSTTFARFLYALGIRDVGEATAASLASHF 543
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQL--RDVGIYW------- 594
LE + A E L + +G F+++ ++ +I +L ++GI+W
Sbjct: 544 GTLEALQSADLEALQQVQDVGIVVATHVRNFLDEAHNQQVIQELISENIGIHWPAPVVVD 603
Query: 595 ---------------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLE 627
L+ K G KV +SK T+ ++ G+ G KL
Sbjct: 604 VEASDSPFAGKTVVLTGSLTLLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLT 663
Query: 628 KAIKLNIKILDEKNFVKIV 646
KA +L I+++DE ++++
Sbjct: 664 KAQELGIEVIDEAEMMRLL 682
>gi|90416525|ref|ZP_01224456.1| DNA ligase, NAD-dependent [gamma proteobacterium HTCC2207]
gi|90331724|gb|EAS46952.1| DNA ligase, NAD-dependent [gamma proteobacterium HTCC2207]
Length = 677
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 259/663 (39%), Positives = 394/663 (59%), Gaps = 35/663 (5%)
Query: 20 ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGEN 79
+LK EL++HN YY+ D P I D++YD+ + L+ IE+++PELL+ DS +Q VG +
Sbjct: 14 QLKDELNQHNHRYYVLDEPTIPDSEYDRSMRRLQDIEQQHPELLSDDSPSQRVGGAALPS 73
Query: 80 SKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--KLTKNIEYIAELKFDGIAVNLRYEY 137
V H M+SLDN FS+E++ F++RI++ L K + I+Y+ E K DG+AV+L Y
Sbjct: 74 FSQVSHAVPMLSLDNAFSEEELEAFDRRISDRLNYKDDQQIDYVCEPKLDGVAVSLLYNQ 133
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L + +TRGDG +GE+IT N+ I+ IPL LN PELLEVR E+ + + F K+N
Sbjct: 134 GLLVRGATRGDGKVGEDITANVRTINSIPLRLNGDGIPELLEVRGEIYLPRGGFDKINAA 193
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
G K F NPRNAAAG LRQL+ KI ++ L A+ VG+ +G P SH +L
Sbjct: 194 AIAKGDKPFVNPRNAAAGSLRQLDSKITASRPLEMCAYSVGQFQGGETPDSHLNMLKALG 253
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
G I + G+ +Y+++ +R LPY+IDG+VYK+N L Q++LGF ++AP
Sbjct: 254 SWGFKINTYVEAVQGIAACEAYYERMQKRRDQLPYDIDGIVYKVNDLGLQQRLGFVAKAP 313
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+A KF ++E +T++ + Q+GRTG +TPVA L PV + G+T++ ATLHN EI R
Sbjct: 314 RWAIARKFPAQEEMTQLVDVEFQVGRTGALTPVARLAPVFVGGVTVSNATLHNGDEIARL 373
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
+ IGDTV++ R+G+VIPK+ + +L RP +++ P CP+C S + +E +ARCS
Sbjct: 374 GLCIGDTVIIRRAGDVIPKVAAVVLDRRPENAQPIVFPENCPVCQSSVRRVEGEAVARCS 433
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G C AQ K ++HF+SRKAM+I GLG K++E LV+ ++ + DLY+++ + L+
Sbjct: 434 GGLF-CGAQSKEAIKHFASRKAMDIDGLGDKLVELLVDRGLIYSPADLYELSATKIADLE 492
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+ K A N++ +I S+ TT ++F++ALGIR VGE T + LA F +LE + +A ++ L
Sbjct: 493 RMGEKSAQNLIDSIAVSRQTTLAKFLFALGIREVGEATGQTLARNFGSLEAIIEAEQDAL 552
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------------------- 594
L + IG F P + +I+ LR+ G+ W
Sbjct: 553 LEVDDIGPVVAYYIRDFFRNPDNLSIINALRESGVSWDDIDITAQDSQPLKGQTWVLTGG 612
Query: 595 ---LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
++ K G KV +S T+ +V G G KL KA L+I + DE+ F+
Sbjct: 613 MEIMSRAEAKDRLQELGAKVAGSVSAKTSQVVAGPGAGSKLTKAQSLDIPVFDEEQFLAF 672
Query: 646 VKG 648
++G
Sbjct: 673 LEG 675
>gi|404497578|ref|YP_006721684.1| NAD-dependent DNA ligase [Geobacter metallireducens GS-15]
gi|418065080|ref|ZP_12702455.1| DNA ligase, NAD-dependent [Geobacter metallireducens RCH3]
gi|123756373|sp|Q39S28.1|DNLJ_GEOMG RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|78195179|gb|ABB32946.1| DNA ligase, NAD-dependent [Geobacter metallireducens GS-15]
gi|373562712|gb|EHP88919.1| DNA ligase, NAD-dependent [Geobacter metallireducens RCH3]
Length = 671
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 394/664 (59%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL+ E+ RH+ YY+ D P ++D +YD L EL K+EE++PEL+T DS ++ VG
Sbjct: 9 RIAELRAEIRRHDHLYYVLDRPELTDAEYDALYRELLKLEEEHPELVTPDSPSRRVGGAP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT--KNIEYIAELKFDGIAVNLR 134
E K V H M+SL+N F+D D+ F+ R+ L L + I Y+ E K DG+AV L
Sbjct: 69 LEKFKQVTHRIPMLSLENAFTDGDIAEFDARVKRALALPAGEEIAYVCEPKLDGLAVELV 128
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194
YEYG L STRGDG +GEN+T N+ + IPL L + PPELLEVR EV + F +L
Sbjct: 129 YEYGTLTVGSTRGDGVVGENVTQNLKTVKSIPLRLEGENPPELLEVRGEVFLPLAAFQRL 188
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N R G F NPRNAAAG LRQL+ +I + L F + GE+RG + S E L+
Sbjct: 189 NAQREEEGEPPFANPRNAAAGSLRQLDSRITARRPLTMFCYAPGEIRGADF-GSQGEFLS 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
++ GL + ++GV ++ +Y+++ KR LPYEIDGVV K++ Q++LG S
Sbjct: 248 ALRQRGLPVTSLARQVTGVAGVLAYYREMTEKRDTLPYEIDGVVVKVDSFPLQRELGEKS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R+PR+A+A KF ++A+T I+ I +GRTG+ITP A L+PV + G+T++RATLHN E+
Sbjct: 308 RSPRWAVAVKFPPRQAVTVIEDIVPSVGRTGVITPTANLRPVEVSGVTVSRATLHNWEEM 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
RK+I+IGDTVV+ R+G+VIP + + R + IP CP C S+++ I +
Sbjct: 368 ERKDIRIGDTVVIERAGDVIPAVVKVLTEKRSGSERFLPIPAACPECGSEVVKIPDEVAV 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC G + C AQ + + HF+SR AM++ GLG+K IE+L+ +V DLY + + +
Sbjct: 428 RCMG--LSCPAQIRESIIHFASRNAMDMEGLGEKYIEQLLRLGLVGNVADLYTLTRDDFM 485
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
+ DR+ KLA N+L AI+ SK SRFI+ALGIRHVGE TAK LA F +++ + +ATE
Sbjct: 486 KFDRMGEKLAENLLNAIEASKKRELSRFIFALGIRHVGEHTAKLLATAFGSIDNLARATE 545
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP---------------- 598
+LL+I +IG ++ F + +R I ++ + G+
Sbjct: 546 AELLSIREIGPQVAQSITTFFHNEGNRETIRRMVEAGVEPTVEEKKVGGKFTGKTFVFTG 605
Query: 599 --------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
++GG +SK T+Y+V G + G KL+KA +L + +L E F++
Sbjct: 606 TLIRFSRSEAQKMVESEGGHAAGSVSKKTDYVVAGDEAGSKLDKARQLGVTVLAEDEFLQ 665
Query: 645 IVKG 648
+++G
Sbjct: 666 MLEG 669
>gi|392544392|ref|ZP_10291529.1| NAD-dependent DNA ligase [Pseudoalteromonas piscicida JCM 20779]
Length = 672
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 254/662 (38%), Positives = 402/662 (60%), Gaps = 33/662 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
+V L+++L +N YY+ DNP + D +YD+++ +L +E+++PEL + DS +Q VG
Sbjct: 8 QVAALRQQLEDYNYQYYVLDNPSVPDAEYDRVMRQLMALEQQHPELQSPDSPSQKVGGEA 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F + + FN+R+ L +K++ + E K DG+AV++ Y
Sbjct: 68 LSKFEQVTHRVPMLSLDNAFDESEFTAFNRRLKERLLTSKDVTFCCEPKLDGLAVSILYR 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
L QA+TRGDG +GENIT N+ I IPL L ++ P +EVR EV + FIKLN+
Sbjct: 128 DSVLVQAATRGDGQVGENITENVKTIRNIPLKLRGEHIPHEVEVRGEVFMDTAGFIKLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ KI + L F+A+ +G + G + + H L
Sbjct: 188 TAQAKGDKTFANPRNAAAGSLRQLDSKITAKRPLMFYAYSMGLVEGGELANEHYAQLQQL 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
Q GL + E ++ + + +Y+ I +R LPYEIDGVV K+N + Q++LGF +RA
Sbjct: 248 QGWGLPMSPETKLVDNAQQALAYYQDIMTRRAELPYEIDGVVIKVNDKAQQEQLGFVARA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 308 PRWAIAFKFPAQEEITQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNGDEIAR 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIP++T +L RP+D+K + P+ CP+C+S + +E +ARC
Sbjct: 368 LGVKIGDTVIVRRAGDVIPQVTQVVLDRRPDDAKEIEFPDTCPVCDSHVERVEGEAVARC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK ++HF+SRKA++I GLG K++E+LV ++ T DL+ + + L
Sbjct: 428 TGGLV-CRAQRKEAIKHFASRKALDIDGLGDKIVEQLVERELIKTPADLFILRQGHFESL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++++K TT ++F+Y+LGIR VGE TA+ LAN+F LE + A+ +
Sbjct: 487 ERMGPKSAKNLVAALEEAKQTTLAKFLYSLGIREVGEATAQNLANHFLTLEKVMVASIDT 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L + +G + F + ++ +++ L +VG+ W
Sbjct: 547 LQQVSDVGVVVAQHIHSFFAEQHNQEVVTALIEVGVTWQDVAAPSEDAQPLAGLTYVLTG 606
Query: 595 ----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
LN + K G KV +SKNT+ + G+K G KL KA +L +++ DE+ +
Sbjct: 607 TLSQLNRNDAKARLQALGAKVAGSVSKNTDAVYAGEKAGSKLTKAQELGVEVFDEEALIA 666
Query: 645 IV 646
++
Sbjct: 667 LL 668
>gi|359455456|ref|ZP_09244675.1| DNA ligase [Pseudoalteromonas sp. BSi20495]
gi|358047453|dbj|GAA80924.1| DNA ligase [Pseudoalteromonas sp. BSi20495]
Length = 672
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 269/668 (40%), Positives = 394/668 (58%), Gaps = 34/668 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S +S +V L+ L +HN YY+ D P I D++YD+LL EL +E +PE LT DS TQ
Sbjct: 3 SSISEQVNHLRTTLEQHNYNYYVLDTPSIPDSEYDRLLRELSALETDHPEFLTADSPTQK 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + V H M+SLDN FS+E+ FN+RI L T + + E K DG+AV
Sbjct: 63 VGGAALSKFEQVAHQVPMLSLDNAFSEEEFTAFNRRIKERLMSTDELTFCCEPKLDGLAV 122
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
++ Y G L QA+TRGDG GENIT N+ I +PL L YP EL EVR EV + F
Sbjct: 123 SIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKEL-EVRGEVFMNSAGF 181
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN G K F NPRNAAAG LRQL+ KI + L F+A+ G + ++P H +
Sbjct: 182 DKLNSEAQKRGDKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIPEDHYQ 241
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
L GL +C E ++ G +E+Y I +R L YEIDGVV KIN + Q++LG
Sbjct: 242 QLEKLTDWGLPLCPETKLVEGPKAALEYYSDILTRRSELKYEIDGVVIKINQKALQERLG 301
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+AYKF ++E +T++ ++ Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 302 FVARAPRWAIAYKFPAQEEITQLLDVDFQVGRTGAITPVARLEPVFVGGVTVSNATLHNS 361
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI R +++GDTV++ R+G+VIP+IT +L RP+D++ + P CPIC+S I +E
Sbjct: 362 DEIARLGVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFPVTCPICDSHIEKVEGE 421
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC+G + C AQRK ++HF+SRKA++I GLG K++++LV+ ++ T DL+ +
Sbjct: 422 AVARCTGGLV-CPAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPADLFVLKQG 480
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L+R+ K A N++ A+ ++K TT ++F+Y+LGIR GE TA+ LAN+F LE +
Sbjct: 481 HFESLERMGPKSAKNLVTALDEAKGTTLAKFLYSLGIREAGEATAQNLANHFLTLENVIN 540
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNPNTK-------- 601
A+ + L + +G F + + +++ L + G+ W L+ P+ +
Sbjct: 541 ASIDSLTQVSDVGEIVAAHVRGFFAEEHNLAVVNALIEQGVNWPALSAPSEEEQPLAGLT 600
Query: 602 ----------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
G KV +S T+ LV G+K G KL KA L I IL E
Sbjct: 601 YVLTGTLNTLNRNDAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDILTE 660
Query: 640 KNFVKIVK 647
++++K
Sbjct: 661 DELIELLK 668
>gi|359435089|ref|ZP_09225318.1| DNA ligase [Pseudoalteromonas sp. BSi20652]
gi|357918226|dbj|GAA61567.1| DNA ligase [Pseudoalteromonas sp. BSi20652]
Length = 672
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 267/667 (40%), Positives = 396/667 (59%), Gaps = 34/667 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S +S +V L+ L +HN YY+ D P I D++YD+LL EL +E ++PE LT DS TQ
Sbjct: 3 SSISEQVNHLRTTLEQHNYNYYVLDTPSIPDSEYDRLLRELSALEMQHPEFLTADSPTQK 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + V H M+SLDN FS+E+ FN+RI L T + + E K DG+AV
Sbjct: 63 VGGAALSKFEQVAHQVPMLSLDNAFSEEEFTAFNRRIKERLMSTDELTFCCEPKLDGLAV 122
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
++ Y G L QA+TRGDG GENIT N+ I +PL L YP EL EVR EV + F
Sbjct: 123 SIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKEL-EVRGEVFMDSAGF 181
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN G K F NPRNAAAG LRQL+ KI + L F+A+ G + ++P H +
Sbjct: 182 DKLNTEAQKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIPEDHYQ 241
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
L GL +C E ++ G +E+Y I +R L YEIDGVV KIN + Q++LG
Sbjct: 242 QLEKLTDWGLPLCPETKLVEGPKAALEYYSDILTRRGELKYEIDGVVIKINKKTLQERLG 301
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+AYKF ++E +T++ ++ Q+GRTG ITPVA LKPV + G+T++ ATLHN
Sbjct: 302 FVARAPRWAIAYKFPAQEEITQLLDVDFQVGRTGAITPVARLKPVFVGGVTVSNATLHNS 361
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
E+ R +++GDTV++ R+G+VIP+IT +L RP+D++ + P CPIC+S + +E
Sbjct: 362 DEVARLGVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFPVTCPICDSHVEKVEGE 421
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC+G + C AQRK ++HF+SRKA++I GLG K++++LV+ ++ T DL+ +
Sbjct: 422 AVARCTGGLV-CPAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPADLFILKQG 480
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L+R+ K A N++ A++++K T+ ++F+Y+LGIR GE TA+ LAN+F LE +
Sbjct: 481 HFESLERMGPKSAKNLVTALEEAKGTSLAKFLYSLGIREAGEATAQNLANHFLTLENVIN 540
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNPNTK-------- 601
A+ + L + +G F ++ + +++ L + GI W L+ P+ +
Sbjct: 541 ASIDSLTQVSDVGEIVATHVRGFFDEEHNLAVVNALIEQGINWPALSAPSEEEQPLAGLT 600
Query: 602 ----------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
G KV +S T+ LV G+K G KL KA L I IL E
Sbjct: 601 YVLTGTLNTLNRNDAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDILTE 660
Query: 640 KNFVKIV 646
++++
Sbjct: 661 DELIELL 667
>gi|410622030|ref|ZP_11332869.1| DNA ligase [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410158428|dbj|GAC28243.1| DNA ligase [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 675
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 268/662 (40%), Positives = 406/662 (61%), Gaps = 39/662 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ LK +L HN YY+ D P I D +YD+L+ EL +E+K+PEL+ DS +Q VG G
Sbjct: 11 IDTLKSQLEEHNYQYYVMDAPSIPDAQYDRLMTELIALEKKHPELVNPDSPSQKVG--GQ 68
Query: 78 ENSKY--VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRY 135
SK+ V H M+SLDNGF++ D+I F KR+ + L +I++ E K DG+A ++ Y
Sbjct: 69 PLSKFDTVVHEVAMLSLDNGFAEADLIAFEKRLQDRLLSFTDIQFSCEPKLDGLAASILY 128
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
E G L +A+TRGDG +GE+IT N+ I +P+ L + P +EVR EV + K F +LN
Sbjct: 129 ENGVLTRAATRGDGQVGEDITQNVKTIANVPIKLRGENIPSRVEVRGEVFMPKAGFEQLN 188
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSS--HSELL 253
+ + G K F NPRNAAAG LRQL+ +I + L F+A+ +G + G ++ H++ L
Sbjct: 189 EMQKKAGSKVFVNPRNAAAGSLRQLDSRITAKRPLLFYAYSMGVIEGDSLTELPLHTQRL 248
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
K G+ +C E SV +G ++ I ++ KI R +L Y+IDGVV+K+N ++ Q++LGF
Sbjct: 249 AALGKWGIPLCKESSVANGADECIAYFAKIGEMRNSLSYDIDGVVFKVNDINLQQRLGFV 308
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
S+APR+A+A KF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN+ E
Sbjct: 309 SKAPRWAIAQKFPAQEELTTLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNQDE 368
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
I R ++IGD VV+ R+G+VIP+I S +L RP+D + P CP C+S I ES
Sbjct: 369 IARLGVKIGDKVVIRRAGDVIPQIVSVVLEQRPDDVRDIVFPTHCPECHSHIERTESEAK 428
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
ARC+G + C AQRK ++HF+SRKA +I GLG K++E+LV+ ++ DL+++N L
Sbjct: 429 ARCTGGLV-CGAQRKEAIKHFASRKAFDIDGLGDKIVEQLVDTALIENPADLFRLNMPKL 487
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
+ L+R+ +K A N+L A+ KS+ TT S+F+YALGIR VGE+TA+ LA ++ LE + +A
Sbjct: 488 ISLERMGDKSAVNLLNALDKSRATTLSKFLYALGIREVGESTARNLALHYMTLEEIMQAD 547
Query: 554 EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------- 594
+ L + +G+ + F+ +PL+ +I+ L ++GI+W
Sbjct: 548 IDSLKEVQDVGAIVAEHLFHFMREPLNLAIINDLIELGIHWPKIQQASEDEQPFAGKTVV 607
Query: 595 -------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
+ K G KV +S T+ L+ G+K G KL KA LN+++ DE
Sbjct: 608 LTGTLSQMGRSEAKAKLQELGAKVSGSVSAKTDLLIAGEKAGSKLSKAESLNVEVWDEAK 667
Query: 642 FV 643
V
Sbjct: 668 MV 669
>gi|414071891|ref|ZP_11407849.1| DNA ligase [Pseudoalteromonas sp. Bsw20308]
gi|410805654|gb|EKS11662.1| DNA ligase [Pseudoalteromonas sp. Bsw20308]
Length = 672
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 269/668 (40%), Positives = 395/668 (59%), Gaps = 34/668 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S +S +V L+ L +HN YY+ D P I D++YD+LL EL +E ++PE LT DS TQ
Sbjct: 3 SSISEQVNHLRTTLEQHNYNYYVLDTPSIPDSEYDRLLRELSALETEHPESLTADSPTQK 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + V H M+SLDN FS+E+ FN+RI L T + + E K DG+AV
Sbjct: 63 VGGAALSKFEQVAHQVPMLSLDNAFSEEEFTAFNRRIKERLMSTDELTFCCEPKLDGLAV 122
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
++ Y G L QA+TRGDG GENIT N+ I +PL L YP EL EVR EV + F
Sbjct: 123 SIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKEL-EVRGEVFMNSAGF 181
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN G K F NPRNAAAG LRQL+ KI + L F+A+ G + ++P H +
Sbjct: 182 DKLNSEAQKRGDKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIPEDHYQ 241
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
L GL +C E ++ G +E+Y I +R L YEIDGVV KIN + Q++LG
Sbjct: 242 QLEKLTDWGLPLCPETKLVEGPKAALEYYSDILTRRSELKYEIDGVVIKINQKALQERLG 301
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+AYKF ++E +T++ ++ Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 302 FVARAPRWAIAYKFPAQEEITQLLDVDFQVGRTGAITPVARLEPVFVGGVTVSNATLHNS 361
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI R +++GDTV++ R+G+VIP+IT +L RP+D++ + P CPIC+S I +E
Sbjct: 362 DEIARLGVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFPVTCPICDSHIEKVEGE 421
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC+G + C AQRK ++HF+SRKA++I GLG K++++LV+ ++ T DL+ +
Sbjct: 422 AVARCTGGLV-CPAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPADLFVLKQG 480
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L+R+ K A N++ A+ ++K TT ++F+Y+LGIR GE TA+ LAN+F LE +
Sbjct: 481 HFESLERMGPKSAKNLVSALDEAKGTTLAKFLYSLGIREAGEATAQNLANHFLTLENVIN 540
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNPNTK-------- 601
A+ + L + +G F + + +++ L + G+ W L+ P+ +
Sbjct: 541 ASIDSLTQVSDVGEIVAAHVRGFFAEEHNLAVVNALIEQGVNWPALSAPSEEEQPLAGLT 600
Query: 602 ----------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
G KV +S T+ LV G+K G KL KA L I IL E
Sbjct: 601 YVLTGTLNTLNRNDAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDILTE 660
Query: 640 KNFVKIVK 647
++++K
Sbjct: 661 DELIELLK 668
>gi|343509399|ref|ZP_08746676.1| NAD-dependent DNA ligase LigA [Vibrio scophthalmi LMG 19158]
gi|342804716|gb|EGU40018.1| NAD-dependent DNA ligase LigA [Vibrio scophthalmi LMG 19158]
Length = 669
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 266/672 (39%), Positives = 404/672 (60%), Gaps = 42/672 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+++ ++ +L++ LH H + YY+ D+P I D +YD+L+ EL IE ++PEL+T DS +Q
Sbjct: 3 TEIQQKLEQLRETLHYHAVRYYVEDSPEIPDAEYDRLMRELLDIEAQHPELVTIDSPSQR 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + + V H M+SLDN F D ++ F+KR+ + L + + E K DG+A+
Sbjct: 63 VGGKPLDGFESVAHEIPMLSLDNAFDDAELESFHKRMADRLPAARFDLFCCEPKLDGLAI 122
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L Y G L QA+TRGDG GEN+T N+ I IPL L + P +EVR EV + K F
Sbjct: 123 SLLYVDGVLVQAATRGDGTTGENVTENVRTISAIPLKLRGEGWPNRIEVRGEVFMPKAGF 182
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN+ G K F NPRNAAAG LRQL+ +I + L F+A+ VG + G + SH +
Sbjct: 183 DKLNQNALKKGEKPFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVEGEPLSLSHYQ 242
Query: 252 ----LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQ 307
L NW GL +C E ++ + + +Y I +R LPYEIDGVV K++ ++ Q
Sbjct: 243 RFLQLKNW----GLPMCPETKLVDSLEDVKAYYHDILTRRDALPYEIDGVVIKVDDVTLQ 298
Query: 308 KKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRAT 367
++LGF +RAPR+A+AYKF ++E +T + + Q+GRTG ITPVA L+P+ + G+T++ AT
Sbjct: 299 ERLGFVARAPRWAIAYKFPAQEEITTLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNAT 358
Query: 368 LHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIY 427
LHN EI R ++IGD+V++ R+G+VIP++ S +L RP+ ++ P CP+C+S +
Sbjct: 359 LHNADEIARLAVKIGDSVIIRRAGDVIPQVVSVVLDRRPDSAREIVFPAQCPVCHSAVER 418
Query: 428 IESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYK 487
+E +ARC+G + C AQRK L+HF SRKA+++ GLG+K+IE+LV+ +V T DL+K
Sbjct: 419 VEGEAVARCTGGLV-CQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDKEMVATPADLFK 477
Query: 488 INFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLE 547
++ + LDR+ K A N++ A+ KSK TT RF+Y+LGIR VGE TA LA +FK+LE
Sbjct: 478 LSAGVITVLDRMGPKSAQNVVDALVKSKQTTLPRFLYSLGIREVGEATAANLAMHFKSLE 537
Query: 548 CMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------- 594
+ AT EQL+ + +G F Q ++ +I++L+ GI W
Sbjct: 538 AVMAATHEQLIEVQDVGVIVASHVTAFFAQEKNQQVITELQQQGIDWPAIEARDESVPQP 597
Query: 595 --------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNI 634
L+ + K G KV +SK T+ L G+ G KL KA +L I
Sbjct: 598 LAGKTVVLTGSLSQLSRSDAKAALQNLGAKVAGSVSKKTDILFVGENAGSKLAKAQELGI 657
Query: 635 KILDEKNFVKIV 646
++ E++ + ++
Sbjct: 658 EVQTEQDLINLM 669
>gi|238759468|ref|ZP_04620632.1| DNA ligase [Yersinia aldovae ATCC 35236]
gi|238702365|gb|EEP94918.1| DNA ligase [Yersinia aldovae ATCC 35236]
Length = 670
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 261/664 (39%), Positives = 395/664 (59%), Gaps = 36/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P I D +YD+L+ +L+++E ++PEL+T DS TQ VG
Sbjct: 7 QINQLRTSLRHHEHLYHVLDAPEIPDAEYDRLMQQLRELEAQHPELVTNDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SLDN F +E + F+KR+ + LK + + + ELK DG+AV+L YE
Sbjct: 67 LDAFEQVKHEVPMLSLDNVFDEESYLAFDKRVHDRLKSVEPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT N+ I IPL L+ P +EVR EV + F +LN
Sbjct: 127 EGELVRAATRGDGTTGENITANVRTIRAIPLRLHGDNIPRRVEVRGEVFMPLAGFEQLND 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P SH L +
Sbjct: 187 EARRKGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHIARLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +G ++I FY+++ R L ++IDGVV K++ L Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVKLCTGSEQVIAFYRQVEQDRAGLGFDIDGVVIKVDDLDLQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T+++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQITQVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIP++ ++ RP D++ P CP+C S I IE +ARC
Sbjct: 367 LGLRIGDTVIVRRAGDVIPQVVGVVMEQRPQDTQEIVFPEHCPVCGSDIERIEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G C AQRK L+HF SR+A+++ G+G K+IE+LV V DL+ + L L
Sbjct: 427 TGGLF-CAAQRKEALKHFVSRRALDVDGMGDKIIEQLVEKQYVENPADLFTLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N+++A++K+K TTF+RF+YALGIR VGE TA LA +F+NL + A +
Sbjct: 486 DRMGPKSAQNLIVALEKAKQTTFARFLYALGIREVGEATAANLAAHFRNLANLRAADIDA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L ++ +G K + F+N+ ++ +I L V I W +++P
Sbjct: 546 LKSVQDVGEVVAKHVMNFLNEEHNQKVIEALEQV-ISWPEPQQIVVEEIDSPFAGKTVVL 604
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 605 TGSLTMLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGITVIDEAEM 664
Query: 643 VKIV 646
++++
Sbjct: 665 IRLL 668
>gi|312173113|emb|CBX81368.1| DNA ligase [Erwinia amylovora ATCC BAA-2158]
Length = 670
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 260/671 (38%), Positives = 396/671 (59%), Gaps = 38/671 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
L ++T L+ L + Y++ D P + D +YD+L+ EL+++E +YPELLT DS TQ
Sbjct: 1 MESLQDKITHLRTLLRHYEHQYHVLDAPTVPDAEYDRLMGELRELETQYPELLTSDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG V H M+SLDN F +E + FNKR+ + LK T +I + ELK DG+A
Sbjct: 61 RVGAAPLSAFGQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDDITFCCELKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GE+IT N+ I IPL L+ PE LEVR EV +
Sbjct: 121 VSLLYEKGQLVRAATRGDGTTGEDITANVRTIRAIPLRLSGDSIPERLEVRGEVFMPLAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F ++N+ G K F NPRNAAAG LRQL+P++ + L FF +G+G L G MP SH
Sbjct: 181 FEQMNQQARSCGQKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGLGLLEGGEMPRSHM 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
L ++ GL + + ++++FY ++ R L ++IDGVV K++ L Q++L
Sbjct: 241 ARLQQFKAWGLPVSDRVRLSHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDSLELQEQL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+A+KF ++E +T ++ + Q+GRTG +TPVA L+PVL+ G+ ++ ATLHN
Sbjct: 301 GFVARAPRWAIAFKFPAQEQITTVRDVEFQVGRTGAMTPVARLEPVLVAGVMVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R ++IGD VV+ R+G+VIP++ S + + +D++ P CPIC S I +E
Sbjct: 361 ADEIERLGLKIGDRVVIRRAGDVIPQVMSVVET--GDDAREIAFPTHCPICGSDIERVEG 418
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
++ARC+G I C AQRK L+HF SR+A++I G+G+K+I++LV+ V +L+++
Sbjct: 419 EVVARCTGGLI-CGAQRKGALKHFVSRRALDIDGMGEKIIDQLVDKEYVKNPAELFELTA 477
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L LDR+ K A N++ A+ K+K TTF+RF+YALGI VGE TA LA +F LE +
Sbjct: 478 GKLTGLDRMGPKSAQNVVNALAKAKQTTFARFLYALGISEVGEATAANLAAHFGTLEALM 537
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRD-VGIYW----------LNNP- 598
A + L+ + +G F+++ +R +I L D G+ W +++P
Sbjct: 538 TADLDALMAVQDVGKVVASHVRNFLDEESNREIIRLLVDKAGVNWPQVVVVKAGEIDSPF 597
Query: 599 -----------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIK 635
G KV +SK T+ ++ G+ G KL KA +L I
Sbjct: 598 AGKTVVLTGSLSILSRDEAKDRLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGID 657
Query: 636 ILDEKNFVKIV 646
++DE+ ++++
Sbjct: 658 VIDEQEMIRLL 668
>gi|401677058|ref|ZP_10809037.1| LigA Protein [Enterobacter sp. SST3]
gi|400215664|gb|EJO46571.1| LigA Protein [Enterobacter sp. SST3]
Length = 647
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 262/645 (40%), Positives = 384/645 (59%), Gaps = 35/645 (5%)
Query: 36 DNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNG 95
D P + D +YD+L+ EL+++E ++PEL+T DS TQ VG V H M+SLDN
Sbjct: 2 DAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQRVGAEPLGAFSQVRHEVPMLSLDNV 61
Query: 96 FSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENI 155
F +E + FNKR+ + LK + + + ELK DG+AV+L YE G L +A+TRGDG GE+I
Sbjct: 62 FDEESFLAFNKRVQDRLKSSDALTWCCELKLDGLAVSLLYENGVLVRAATRGDGTTGEDI 121
Query: 156 TTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAG 215
TTN+ I IPL L P LEVR EV + + F K+N+ G K F NPRNAAAG
Sbjct: 122 TTNVRTIRAIPLKLQGDNIPARLEVRGEVFLPQAGFEKINEEARRTGGKVFANPRNAAAG 181
Query: 216 ILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNK 275
LRQL+P+I + L FF +GVG L G +P +H L ++ GL + +
Sbjct: 182 SLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQFKAWGLPVSNRVQLCDSPEA 241
Query: 276 LIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIK 335
++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RAPR+A+A+KF ++E +T ++
Sbjct: 242 VLAFYHKVEADRPTLGFDIDGVVIKVNSLALQEQLGFVARAPRWAVAFKFPAQEQMTFVR 301
Query: 336 AINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIP 395
+ Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R ++IGD VV+ R+G+VIP
Sbjct: 302 DVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIP 361
Query: 396 KITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFS 455
++ + + S RP+D++ P CP+C S + +E +ARC+G I C AQRK L+HF
Sbjct: 362 QVVNVVESERPDDTREVVFPTHCPVCGSDVERVEGEAVARCTGGLI-CGAQRKESLKHFV 420
Query: 456 SRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSK 515
SR+AM++ G+G K+I++LV V T DL+++ L LDR+ K A N++ A++ +K
Sbjct: 421 SRRAMDVDGMGDKIIDQLVEKEYVHTPADLFRLTAGKLTGLDRMGPKSAQNVVNALEAAK 480
Query: 516 LTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575
TTF+RF+YALGIR VGE TA LA YF LE + KA+ E+L +P +G F
Sbjct: 481 ETTFARFLYALGIREVGEATAAGLAVYFGTLEALEKASIEELQKVPDVGIVVATHVFNFF 540
Query: 576 NQPLHRLLISQLRDVGIYW----------------------------LNNPNTK------ 601
+ +R +I QL GI W L+ + K
Sbjct: 541 AEESNREVIGQLLAEGIKWPAPVVVNAEEIDSPFAGKTVVLTGSLSQLSRDDAKARLVAL 600
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
G KV +SK T+ ++ G+ G KL KA +L I+++DE ++++
Sbjct: 601 GAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMMRLL 645
>gi|407687686|ref|YP_006802859.1| NAD-dependent DNA ligase [Alteromonas macleodii str. 'Balearic Sea
AD45']
gi|407291066|gb|AFT95378.1| NAD-dependent DNA ligase [Alteromonas macleodii str. 'Balearic Sea
AD45']
Length = 678
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 255/657 (38%), Positives = 399/657 (60%), Gaps = 35/657 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+ L+ +N YY+ D+P + D YD+ + L +E++YP L + +S +Q VG
Sbjct: 15 LRNTLNEYNYQYYVMDDPSVPDAVYDRDMQALIALEKQYPTLQSPNSPSQKVGGAALSAF 74
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ V H M+SLDN F +E ++ F KR+ + LK + +++ E K DG+AV++ YE G L
Sbjct: 75 EQVTHDVPMLSLDNAFDEESLLAFEKRLKDRLKDSATLDFSCEPKLDGLAVSILYENGEL 134
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
+A+TRGDG +GENIT N+ I +PL L ++ PE +EVR EV + ++ F KLN+++
Sbjct: 135 VRAATRGDGQVGENITANVRTISNVPLTLRGEHYPERVEVRGEVFMPREGFAKLNEHQKE 194
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPSSHSELLNWYQK 258
G K F NPRNAAAG LRQL+ KI + L F+A+ +G + +P++HSE L
Sbjct: 195 TGGKVFANPRNAAAGSLRQLDSKITAKRPLMFYAYSLGVVQPESFELPTTHSERLKQLGN 254
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL +C + G + +Y I KR NLPY+IDGVV+K+N + Q LGF +RAPR
Sbjct: 255 WGLPLCPDIDTAEGGKGCLAYYNHILEKRDNLPYDIDGVVFKVNRIDLQNALGFVARAPR 314
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+A KF ++E +TK+ + Q+GRTG ITPVA L+PV + G+T++ ATLHN+ EI R
Sbjct: 315 WAIAQKFPAQEEVTKLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNQDEISRLG 374
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
+++GDTVV+ R+G+VIP++ S + + R P+ CP+C+S++ +E +ARC+G
Sbjct: 375 VKVGDTVVIRRAGDVIPQVVSVVEANRTGSETNITFPSQCPVCDSQVEKLEDEAVARCTG 434
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
I C AQRK L+HF+SRKA +I GLG K++++LV+A++V + D + ++ +++ L+R
Sbjct: 435 GLI-CAAQRKQALKHFASRKAFDIDGLGDKLVDQLVDADLVHSPADFFTLSLGDVVGLER 493
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
++ K A+ +L +++ SK TT ++F+YALGIR VGE TA LA +F+ LE + +A+ E L+
Sbjct: 494 MAEKSASKLLASLEASKQTTLAKFLYALGIREVGEATAANLAAHFETLEAISEASLEALV 553
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNPNTK--------------- 601
+ +G F N+ + +I L GI W + P++
Sbjct: 554 EVQDVGEVVATHIFNFFNESHNTDVIDALLKEGINWPAIEKPDSDNLPLEGKTCVITGTL 613
Query: 602 ---------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +SKNT++LV G+K G KL KA +L++++ DE +
Sbjct: 614 SEMGRSDAKARLQLLGAKVAGSVSKNTDFLVAGEKAGSKLTKAQELDVEVWDEAALI 670
>gi|166216286|sp|A0KVI4.2|DNLJ_SHESA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
Length = 689
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 262/664 (39%), Positives = 395/664 (59%), Gaps = 38/664 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L + L+ HNI YY+ D P I+D++YD+L+ LK++E +YP+ + DS TQ VG +
Sbjct: 30 LCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAADSPTQRVGGMALAKF 89
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ + H M+SLDN F + D F+KR+++ + + + E K DG+AV++ Y G L
Sbjct: 90 EQITHLKPMLSLDNAFDEADFSAFHKRVSDRVG---EVSFCCEPKLDGLAVSILYRNGVL 146
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
++A+TRGDG +GE+IT N+ I IPL L PEL+EVR E + K F LN+
Sbjct: 147 ERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVRGEAFMPKAAFEALNERARL 206
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPSSHSELLNWYQK 258
K F NPRNAAAG LRQL+ KI ++ L F+A+ +G E + +H E L +
Sbjct: 207 KDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPTSHELAKTHYEQLQQLKS 266
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL + E V ++++ +Y+ I +R +LP+EIDGVV K+N ++ Q+ LGF +++PR
Sbjct: 267 WGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVVMKVNDIAQQQTLGFVAKSPR 326
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E +T ++ ++ Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R
Sbjct: 327 WAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIARLG 386
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
+ +GDTV++ R+G+VIP+I + + RP D+K P CP+C S + +E +ARCSG
Sbjct: 387 VMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKAIAFPQHCPVCGSLVERLEGEAVARCSG 446
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+K+ + LDR
Sbjct: 447 GLF-CEAQRKEAIKHFASRKALDIDGMGDKIVEQLIDKELVQSPADLFKLTASMMTMLDR 505
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N+ LAI+ +K TT RF+YALGIR VGETTA LA +F +LE + AT EQL+
Sbjct: 506 MGIKSATNLALAIEAAKTTTLPRFLYALGIREVGETTAANLATHFGSLEALRVATIEQLI 565
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------ 594
+ IG + F QP + +I L G+ W
Sbjct: 566 QVEDIGEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPAIAAPSADEQPLKGQTWVLTGTL 625
Query: 595 --LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
LN + K G KV +SKNT+ LV G+ G KL KA +L +K++ E + ++
Sbjct: 626 NQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 685
Query: 647 KGFS 650
S
Sbjct: 686 AANS 689
>gi|381394378|ref|ZP_09920095.1| DNA ligase [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379329980|dbj|GAB55228.1| DNA ligase [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 680
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 268/663 (40%), Positives = 394/663 (59%), Gaps = 35/663 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
+K + +N YY+ D+P I D +YD+L+ +L IE +P L T DS +Q VG
Sbjct: 18 IKTTIEDYNHQYYVLDDPSIPDVEYDRLMQDLLAIEGSFPSLRTPDSPSQKVGGAALTKF 77
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ H M+SLDNGF D+D+ F +RI + L + IE+ E K DG+AV++ YE G L
Sbjct: 78 DQIEHEIAMLSLDNGFKDDDLRAFEQRIKDRLNTEETIEFACEPKLDGLAVSILYENGIL 137
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
QA+TRGDG +GENIT N+ I +PL L P+ LEVR EV + K+ F LN+ +
Sbjct: 138 TQAATRGDGQVGENITANVKTIANVPLKLRGDNLPQRLEVRGEVFMPKQGFENLNELQKK 197
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG--MNMPSSHSELLNWYQK 258
G K F NPRNAAAG LRQL+ KI ++ L +A+ VG L+G ++ SH++ L +
Sbjct: 198 AGNKIFVNPRNAAAGSLRQLDSKITASRPLRLYAYSVGILQGGDISQAQSHTQRLTCLEA 257
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
+GL +C E V+ G +E++ KI R +L Y+IDGVV+K+N ++ Q +LGF S+APR
Sbjct: 258 LGLPLCKETQVVRGFTACLEYFVKIGQVRNSLSYDIDGVVFKVNRITLQNRLGFVSKAPR 317
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+A KF ++E LT +K + Q+GRTG ITPVA L+PV + G+T++ ATLHN+ EI R
Sbjct: 318 WAMAQKFPAQEELTILKEVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNQDEINRLG 377
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
++IGDTVV+ R+G+VIP+I S +L RP S P+ CP+C S + IE+ + RC+G
Sbjct: 378 VRIGDTVVIRRAGDVIPQIVSVVLDRRPAHSTEISFPSECPVCQSHVERIENEAVMRCTG 437
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
+ C AQ K ++HF+SRKA +I GLG K++++LV+ ++ D++ + L+ L+R
Sbjct: 438 GLV-CAAQTKQAIKHFASRKAFDIEGLGDKIVDQLVDQKLIQNPTDIFALQLSELVSLER 496
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
K A N+L AI SK TT ++FIY+LGIR VGE+TA+ LA +F L+ + A + L
Sbjct: 497 FGTKSAVNLLRAIDASKQTTLAKFIYSLGIREVGESTARNLALHFNTLDAIISANLDALK 556
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNPNTK--------------- 601
+ +G +F+ +PL+ ++++L VGI W + P+ +
Sbjct: 557 EVQDVGEIVASHLYEFLREPLNIDVLNKLVSVGITWPVIAPPSQEKQPLLGKTLVLTGML 616
Query: 602 ---------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
G KV IS T+ L+ G+K G KL KA L I+I DE VK
Sbjct: 617 TQMGRTEAKSKLQELGAKVSGSISAKTDLLIAGEKAGSKLTKAQNLGIEIWDENALVKYF 676
Query: 647 KGF 649
G
Sbjct: 677 SGL 679
>gi|117920017|ref|YP_869209.1| NAD-dependent DNA ligase [Shewanella sp. ANA-3]
gi|117612349|gb|ABK47803.1| DNA ligase, NAD-dependent [Shewanella sp. ANA-3]
Length = 691
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 262/664 (39%), Positives = 395/664 (59%), Gaps = 38/664 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L + L+ HNI YY+ D P I+D++YD+L+ LK++E +YP+ + DS TQ VG +
Sbjct: 32 LCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAADSPTQRVGGMALAKF 91
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ + H M+SLDN F + D F+KR+++ + + + E K DG+AV++ Y G L
Sbjct: 92 EQITHLKPMLSLDNAFDEADFSAFHKRVSDRVG---EVSFCCEPKLDGLAVSILYRNGVL 148
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
++A+TRGDG +GE+IT N+ I IPL L PEL+EVR E + K F LN+
Sbjct: 149 ERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVRGEAFMPKAAFEALNERARL 208
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPSSHSELLNWYQK 258
K F NPRNAAAG LRQL+ KI ++ L F+A+ +G E + +H E L +
Sbjct: 209 KDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPTSHELAKTHYEQLQQLKS 268
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL + E V ++++ +Y+ I +R +LP+EIDGVV K+N ++ Q+ LGF +++PR
Sbjct: 269 WGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVVMKVNDIAQQQTLGFVAKSPR 328
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E +T ++ ++ Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R
Sbjct: 329 WAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIARLG 388
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
+ +GDTV++ R+G+VIP+I + + RP D+K P CP+C S + +E +ARCSG
Sbjct: 389 VMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKAIAFPQHCPVCGSLVERLEGEAVARCSG 448
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+K+ + LDR
Sbjct: 449 GLF-CEAQRKEAIKHFASRKALDIDGMGDKIVEQLIDKELVQSPADLFKLTASMMTMLDR 507
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N+ LAI+ +K TT RF+YALGIR VGETTA LA +F +LE + AT EQL+
Sbjct: 508 MGIKSATNLALAIEAAKTTTLPRFLYALGIREVGETTAANLATHFGSLEALRVATIEQLI 567
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------ 594
+ IG + F QP + +I L G+ W
Sbjct: 568 QVEDIGEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPAIAAPSADEQPLKGQTWVLTGTL 627
Query: 595 --LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
LN + K G KV +SKNT+ LV G+ G KL KA +L +K++ E + ++
Sbjct: 628 NQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 687
Query: 647 KGFS 650
S
Sbjct: 688 AANS 691
>gi|127513305|ref|YP_001094502.1| NAD-dependent DNA ligase [Shewanella loihica PV-4]
gi|166216242|sp|A3QFJ5.1|DNLJ_SHELP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|126638600|gb|ABO24243.1| DNA ligase, NAD-dependent [Shewanella loihica PV-4]
Length = 669
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 262/665 (39%), Positives = 400/665 (60%), Gaps = 41/665 (6%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ +L EL++HN YY+ D P I D +YD+L+ L+++E ++PEL DS TQ VG G
Sbjct: 8 IKQLTDELNQHNYRYYVDDAPSIPDAEYDRLMRRLQELEAEHPELALADSPTQRVG--GE 65
Query: 78 ENSKY--VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRY 135
SK+ V H M+SLDN FS+E+ F KR+ + KL + E K DG+AV++ Y
Sbjct: 66 ALSKFNQVTHLKPMLSLDNVFSEEEFNAFYKRVGD--KLPDTPAFCCEPKLDGLAVSILY 123
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
G ++A+TRGDG +GE+IT N+ I +PL L P LLEVR EV + K F +N
Sbjct: 124 RDGVFERAATRGDGTVGEDITENVRTIKSVPLRLRGSGFPPLLEVRGEVFMPKAAFEAVN 183
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP--SSHSELL 253
G K F NPRNAAAG LRQL+ KI ++ L F+A+ +G + P +SH E L
Sbjct: 184 DKARAKGEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPETWPLAASHFEQL 243
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
++ G + E V + + ++ +Y+ I +R L YEIDGVV K+N ++ Q+ LGF
Sbjct: 244 VQLKEWGCPVSSEVKVCADIPSVLAYYQDILTRRSELAYEIDGVVLKVNDIAQQQTLGFV 303
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
++APR+A AYKF ++E +T+++ ++ Q+GRTG +TPVA L+PV + G+T++ ATLHN E
Sbjct: 304 AKAPRWATAYKFPAQEEITQLEGVDFQVGRTGAVTPVARLQPVFVGGVTVSNATLHNADE 363
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
I R + IGD+V++ R+G+VIP++ + + RP+D++ + P CP+C S + +E +
Sbjct: 364 IARLGVMIGDSVIIRRAGDVIPQVVAVVPEKRPSDAQAIQFPPQCPVCGSDVERVEGEAV 423
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
ARC+G + C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+K+ +
Sbjct: 424 ARCTGGLV-CEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVASPADLFKLTASAI 482
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
LDR+ K A N++ A++ +K TTF+RF+Y+LGIR VGE TA LANYFK LE + +A
Sbjct: 483 TMLDRMGMKSATNLVNALEAAKQTTFARFLYSLGIREVGEATAANLANYFKTLEHLKQAD 542
Query: 554 EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------- 594
E + + +G + + F QP + +I L G++W
Sbjct: 543 AETFMKVDDVGVIVAQHLVHFFEQPHNLEVIDGLLQAGVHWPDIEEVAEEALSLKGQTWV 602
Query: 595 -------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
LN + K G KV +SKNT+ LV G+ G KL KA +L +K++DE
Sbjct: 603 LTGTLTQLNRNDAKAKLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQELGVKVIDEAE 662
Query: 642 FVKIV 646
+ I+
Sbjct: 663 LLAIL 667
>gi|406596752|ref|YP_006747882.1| NAD-dependent DNA ligase [Alteromonas macleodii ATCC 27126]
gi|406374073|gb|AFS37328.1| NAD-dependent DNA ligase [Alteromonas macleodii ATCC 27126]
Length = 678
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 254/661 (38%), Positives = 401/661 (60%), Gaps = 35/661 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ L+ L+ +N YY+ D+P + D YD+ + L +E++YP L + +S +Q VG
Sbjct: 11 QIETLRNTLNEYNYQYYVMDDPSVPDAVYDRDMQALIALEKQYPTLQSPNSPSQKVGGAA 70
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F +E ++ F KR+ + LK + +++ E K DG+AV++ YE
Sbjct: 71 LSAFEQVTHDVPMLSLDNAFDEESLLAFEKRLKDRLKDSATLDFSCEPKLDGLAVSILYE 130
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG +GENIT N+ I +PL L ++ PE +EVR EV + ++ F KLN+
Sbjct: 131 NGELVRAATRGDGQVGENITANVRTISNVPLTLRGEHYPERVEVRGEVFMPREGFAKLNE 190
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPSSHSELLN 254
++ G K F NPRNAAAG LRQL+ KI + L F+A+ +G + +P++HSE L
Sbjct: 191 HQKETGGKVFANPRNAAAGSLRQLDSKITAKRPLMFYAYSLGVVQPESFELPTTHSERLK 250
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
GL +C + G + +Y I KR +LPY+IDGVV+K+N + Q LGF +
Sbjct: 251 QLGNWGLPLCPDIDTAEGGKGCLAYYNHILEKRDSLPYDIDGVVFKVNRIDLQDALGFVA 310
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+A KF ++E +TK+ + Q+GRTG ITPVA L+PV + G+T++ ATLHN+ EI
Sbjct: 311 RAPRWAIAQKFPAQEEVTKLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNQDEI 370
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
R +++GDTVV+ R+G+VIP++ S + + R P+ CP+C+S++ +E +A
Sbjct: 371 SRLGVKVGDTVVIRRAGDVIPQVVSVVEANRTGSETDITFPSQCPVCDSQVEKLEDEAVA 430
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+G I C AQRK L+HF+SRKA +I GLG K++++LV+A++V + D + ++ +++
Sbjct: 431 RCTGGLI-CAAQRKQALKHFASRKAFDIDGLGDKLVDQLVDADLVHSPADFFTLSLGDVV 489
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
L+R++ K A+ +L +++ SK TT ++F+YALGIR VGE TA LA +F+ LE + +A+
Sbjct: 490 GLERMAEKSASKLLASLEASKQTTLAKFLYALGIREVGEATAANLAAHFETLEAIREASL 549
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNPNTK----------- 601
E L+ + +G F N+ + +I L GI W + P++
Sbjct: 550 EALVEVQDVGEVVATHIFNFFNESHNTDVIDALLKEGINWPAIEKPDSDNLPLEGKTCVI 609
Query: 602 -------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SKNT++LV G+K G KL KA +L++++ DE
Sbjct: 610 TGTLSEMGRSDAKARLQLLGAKVAGSVSKNTDFLVAGEKAGSKLTKAQELDVEVWDEAAL 669
Query: 643 V 643
+
Sbjct: 670 I 670
>gi|332532506|ref|ZP_08408384.1| DNA ligase [Pseudoalteromonas haloplanktis ANT/505]
gi|332038149|gb|EGI74596.1| DNA ligase [Pseudoalteromonas haloplanktis ANT/505]
Length = 672
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 266/668 (39%), Positives = 397/668 (59%), Gaps = 34/668 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S +S ++ L+ L +HN YY+ D P I D++YD+LL EL +E ++PE LT DS TQ
Sbjct: 3 SSISEQINHLRTTLEQHNYNYYVLDTPSIPDSEYDRLLRELSALEMQHPEFLTADSPTQK 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + V H M+SLDN FS+E+ FN+RI + L T + + E K DG+AV
Sbjct: 63 VGGAALSKFEQVAHQVPMLSLDNAFSEEEFTAFNRRIKDRLMSTDELTFCCEPKLDGLAV 122
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
++ Y G L QA+TRGDG GENIT N+ I +PL L YP EL EVR EV + F
Sbjct: 123 SIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKEL-EVRGEVFMDSAGF 181
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN G K F NPRNAAAG LRQL+ KI + L F+A+ G + ++P H +
Sbjct: 182 DKLNTEAQKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIPEDHYQ 241
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
L GL +C E ++ G +E+Y I +R L YEIDGVV KIN + Q++LG
Sbjct: 242 QLEKLTDWGLPLCPETKLVEGPKAALEYYSDILTRRGELKYEIDGVVIKINQKALQERLG 301
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+AYKF ++E +T++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 302 FVARAPRWAIAYKFPAQEEITQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNG 361
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI R +++GDTV++ R+G+VIP+IT +L RP+D++ + P CPIC+S + +E
Sbjct: 362 DEIARLGVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFPVTCPICDSHVEKVEGE 421
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC+G + C AQRK ++HF+SRKA++I GLG K++++LV+ ++ T DL+ +
Sbjct: 422 AVARCTGGLV-CPAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPADLFILKQG 480
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L+R+ K A N++ A++++K TT ++F+Y+LGIR GE TA+ LAN+F LE +
Sbjct: 481 HFESLERMGPKSAKNLVTALEEAKGTTLAKFLYSLGIREAGEATAQNLANHFLTLENIIN 540
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNPNTK-------- 601
A+ + L + +G F ++ + +++ L + G+ W L+ P+ +
Sbjct: 541 ASIDSLTQVSDVGEIVATHVRGFFDEEHNLEVVNALIEQGVNWPALSAPSEEEQPLAGLT 600
Query: 602 ----------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
G KV +S T+ LV G+K G KL KA L I IL E
Sbjct: 601 YVLTGTLNTLNRNDAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDILTE 660
Query: 640 KNFVKIVK 647
+++++
Sbjct: 661 DELIELLQ 668
>gi|221066629|ref|ZP_03542734.1| DNA ligase, NAD-dependent [Comamonas testosteroni KF-1]
gi|220711652|gb|EED67020.1| DNA ligase, NAD-dependent [Comamonas testosteroni KF-1]
Length = 708
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 264/691 (38%), Positives = 408/691 (59%), Gaps = 50/691 (7%)
Query: 5 AKKKINFS---KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPE 61
A+ IN ++ +V L+ +L + YY+ D P + D +YD++ +L+ +E YP
Sbjct: 17 AQDAINAGVPGSVTSKVAALRAQLWQWAHEYYVLDAPTVPDGEYDRVYQQLEALEGAYPA 76
Query: 62 LLTKDSLTQHVGLVGG--ENSKYVHHTFKMMSLDNGFSDE--DVIIFNKRITNELKLTKN 117
L+T DS TQ V +G + V H M+S+ +E + F++R+ EL L +
Sbjct: 77 LVTPDSPTQRV--IGAVLDGLTPVRHAVPMLSIQTETDNEATGAMAFDQRVRKELGLDAS 134
Query: 118 ---IEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-KY 173
IEY+AE KFDG+A+NLRYE G L QA+TRGDG +GE++T NI I +IPL L +
Sbjct: 135 AAAIEYVAEPKFDGLAMNLRYENGRLVQATTRGDGEVGEDVTHNIRTIRQIPLSLPADRN 194
Query: 174 PPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFF 233
P ++EVR EV + K D KLN + G K F NPRNAAAG +RQL+ I + L FF
Sbjct: 195 VPPVVEVRGEVHMAKADLEKLNARQQAAGAKTFANPRNAAAGSVRQLDSSIAAQRPLSFF 254
Query: 234 AHGVGEL----RGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFN 289
A+G+GE+ +G +H +L + G + + ++ G ++L+ F+++I +R N
Sbjct: 255 AYGLGEITPPEQGGPDFGTHYAMLQTLRSWGFPVAPQVALARGASELVAFHQRIGAERAN 314
Query: 290 LPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITP 349
LPYEIDGVVYK+N L+ Q++LGF SR PR+A+A+K+ ++E T ++AI++Q+GRTG +TP
Sbjct: 315 LPYEIDGVVYKVNSLALQRRLGFKSREPRWAVAHKYPAQEMPTLMEAIDVQVGRTGKLTP 374
Query: 350 VALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDS 409
VA L PV + G+ +T ATL N +I +K +++GD V+V R+G+VIP++ + RP
Sbjct: 375 VARLAPVQVGGVVVTNATLSNLFDIRKKGVRVGDQVIVRRAGDVIPEVVGRVPGERPVYV 434
Query: 410 KIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKM 469
F++P CPIC S ++ + RC+G C AQRK + HF+ R+AM+I GLG K+
Sbjct: 435 PNFRMPRTCPICASAVVREKGEANHRCTGGLF-CGAQRKEAILHFAHRRAMDIEGLGDKL 493
Query: 470 IEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIR 529
+++LV+ +V DLY++ +L LDR++ K A N+L A++KSK TT RF++ LGIR
Sbjct: 494 VDQLVDGQVVRVLPDLYRLGLSSLAALDRMAEKSAQNVLAALEKSKSTTLQRFLFGLGIR 553
Query: 530 HVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRD 589
+VGE+TA++LA +F L+ + A+ E+LL + +G + F QP +R ++ QLR
Sbjct: 554 NVGESTARDLAKHFGKLDAIMDASVEELLQVKDVGPVVADSIHTFFAQPHNREVVEQLRA 613
Query: 590 VGIYWLNNP--------------------------------NTKGGKVVNFISKNTNYLV 617
G++W G KV +SK T+Y+V
Sbjct: 614 CGVHWEEGEPVEKAPQILAGLTVVLTGTLPTLGRDVAKDMLEAAGAKVSGSVSKKTSYVV 673
Query: 618 KGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 648
G + G KL KA +L + +LDE + +++G
Sbjct: 674 AGAEAGSKLAKAEELGVPVLDEAGMLALLRG 704
>gi|421845521|ref|ZP_16278675.1| NAD-dependent DNA ligase LigA [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|411773424|gb|EKS56983.1| NAD-dependent DNA ligase LigA [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|455641498|gb|EMF20669.1| NAD-dependent DNA ligase LigA [Citrobacter freundii GTC 09479]
Length = 671
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 263/664 (39%), Positives = 401/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+LL EL+++E ++P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLLRELRELEAQHPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T + + ELK DG+AV++ YE
Sbjct: 67 LTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDKLTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPTRLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 EARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGVLPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + ++ +++ +Y K+ R L ++IDGVV K+N ++ Q++LGF +RA
Sbjct: 247 KEWGLPVSDRVALCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSMALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + ++S RP+D++ + P CP+CNS + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVISERPDDTREIEFPTHCPVCNSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+ + L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFTLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF L+ + A+ E+
Sbjct: 486 DRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLDALEAASVEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL + GI+W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNREVIVQLLEQGIHWPAPVVINAEEIDSPFAGKTVVL 605
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSLMSRDDAKARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|407683760|ref|YP_006798934.1| NAD-dependent DNA ligase [Alteromonas macleodii str. 'English
Channel 673']
gi|407245371|gb|AFT74557.1| NAD-dependent DNA ligase [Alteromonas macleodii str. 'English
Channel 673']
Length = 678
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 255/661 (38%), Positives = 400/661 (60%), Gaps = 35/661 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ L+ L+ +N YY+ D+P + D YD+ + L +E++YP L + +S +Q VG
Sbjct: 11 QIATLRNTLNEYNYQYYVMDDPSVPDAVYDRDMQALIALEKQYPTLQSPNSPSQKVGGAA 70
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F +E ++ F KR+ + LK + +++ E K DG+AV++ YE
Sbjct: 71 LLAFEQVTHDVPMLSLDNAFDEESLLAFEKRLKDRLKDSATLDFSCEPKLDGLAVSILYE 130
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG +GENIT N+ I +PL L ++ PE +EVR EV + + F KLN+
Sbjct: 131 NGELVRAATRGDGQVGENITANVRTIANVPLTLRGEHYPERVEVRGEVFMPRDGFAKLNE 190
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPSSHSELLN 254
++ G K F NPRNAAAG LRQL+ KI + L F+A+ +G + +P++HSE L
Sbjct: 191 HQKEAGGKVFANPRNAAAGSLRQLDSKITAKRPLMFYAYSLGVVQPESFELPTTHSERLK 250
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
GL +C + G + +Y I KR NLPY+IDGVV+K+N + Q LGF +
Sbjct: 251 QLGNWGLPLCPDIDTAEGGKGCLAYYNHILEKRDNLPYDIDGVVFKVNRIDLQNALGFVA 310
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+A KF ++E +TK+ + Q+GRTG ITPVA L+PV + G+T++ ATLHN+ EI
Sbjct: 311 RAPRWAIAQKFPAQEEVTKLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNQDEI 370
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
R +++GDTVV+ R+G+VIP++ S + + R P+ CP+C+S++ +E +A
Sbjct: 371 SRLGVKVGDTVVIRRAGDVIPQVVSVVEANRTGSETDITFPSQCPVCDSQVEKLEDEAVA 430
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+G I C AQRK L+HF+SRKA +I GLG K++++LV+A++V + D + ++ +++
Sbjct: 431 RCTGGLI-CAAQRKQALKHFASRKAFDIDGLGDKLVDQLVDADLVHSPADFFTLSLGDVV 489
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
L+R++ K A+ +L +++ SK TT ++F+YALGIR VGE TA LA +F+ LE + +A+
Sbjct: 490 GLERMAEKSASKLLASLEASKQTTLAKFLYALGIREVGEATAANLAAHFETLEAIREASL 549
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNPNTK----------- 601
E L+ + +G F N+ + +I L GI W + P++
Sbjct: 550 EALVEVQDVGEVVATHIFNFFNESHNTDVIDALLKEGINWPAIEKPDSDNLPLEGKTCVI 609
Query: 602 -------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SKNT++LV G+K G KL KA +L++++ DE
Sbjct: 610 TGTLSEMGRSDAKARLQLLGAKVAGSVSKNTDFLVAGEKAGSKLTKAQELDVEVWDEAAL 669
Query: 643 V 643
+
Sbjct: 670 I 670
>gi|119774653|ref|YP_927393.1| DNA ligase (NAD(+)) [Shewanella amazonensis SB2B]
gi|166216239|sp|A1S5R7.1|DNLJ_SHEAM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|119767153|gb|ABL99723.1| DNA ligase (NAD(+)) [Shewanella amazonensis SB2B]
Length = 681
Score = 517 bits (1331), Expect = e-143, Method: Compositional matrix adjust.
Identities = 263/683 (38%), Positives = 404/683 (59%), Gaps = 41/683 (6%)
Query: 1 MSFHAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYP 60
MS A + ++ + L E++RHNIAYY+ D P I D +YD+L+ +LK +E +YP
Sbjct: 1 MSGPAHFQGTIMQVKAEIQRLTAEINRHNIAYYVQDAPSIPDAEYDRLMNQLKALEAEYP 60
Query: 61 ELLTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEY 120
+ DS TQ VG + V H M+SLDN F++ED + F+KR+T+ K+ + Y
Sbjct: 61 QFAEPDSPTQRVGGAALNKFEQVSHLKPMLSLDNAFNEEDFVAFDKRLTD--KVGSQV-Y 117
Query: 121 IAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEV 180
AE K DG+AV+L Y G L++A+TRGDG +GE+I+ N+ I +PL L P L+EV
Sbjct: 118 CAEPKLDGLAVSLIYRNGVLERAATRGDGAVGEDISVNMRTIKSVPLRLQGDDIPALVEV 177
Query: 181 RCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL 240
R EV + + F LN G K F NPRNAAAG LRQL+ KI + L F+A+ +G +
Sbjct: 178 RGEVFMPRAAFEALNDRARAKGDKLFVNPRNAAAGSLRQLDSKITAERSLAFYAYALGVV 237
Query: 241 RGMN-----MPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEID 295
+ N + +H L GL + E + G+ +++ +Y I +R L +EID
Sbjct: 238 QDDNGADLVLAPTHKGQLERLTAFGLPVSKEVKLCEGLAEVMAYYADILKRRDELAFEID 297
Query: 296 GVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKP 355
GVV K+N + Q++LGF +RAPR+A+A+KF ++E +T ++ ++ Q+GRTG +TPVA LKP
Sbjct: 298 GVVIKVNDIEAQQQLGFVARAPRWAIAFKFPAQEEMTVLEGVDFQVGRTGAVTPVARLKP 357
Query: 356 VLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIP 415
V + G+T++ ATLHN EI R ++IGDTV++ R+G+VIP+I + + RP++++ P
Sbjct: 358 VFVGGVTVSNATLHNGDEIARLGVKIGDTVIIRRAGDVIPQIVAVVPERRPDEAQDILFP 417
Query: 416 NICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVN 475
+ CP+C S + IE +ARCSG C AQR+ ++HF+SRKAM I G+G K++E+L++
Sbjct: 418 DNCPVCGSLVERIEGEAVARCSGGLF-CEAQRREAIKHFASRKAMYIDGMGDKVVEQLID 476
Query: 476 ANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETT 535
+V + DL+K+N L L+R+ K A N++ AI+++K TT +F+YALGIR VGE T
Sbjct: 477 KELVESPADLFKLNVSKLTMLERMGTKSATNLVAAIEEAKTTTLPKFLYALGIREVGEAT 536
Query: 536 AKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW- 594
A LA +F++LE + A + L+ + +G+ + F QP + +I L G+ W
Sbjct: 537 AANLAKHFRSLEAIRDADVDALIQVEDVGTVVAQHVAHFFAQPHNLEVIDALIAAGVNWP 596
Query: 595 -LNNPNTK------------------------------GGKVVNFISKNTNYLVKGQKPG 623
+ P+ G KV +SKNT+ +V G+ G
Sbjct: 597 AIEKPSADAQPLLGQTWVLTGTLTSLGRTEAKAKLEALGAKVAGSVSKNTHCVVAGEAAG 656
Query: 624 KKLEKAIKLNIKILDEKNFVKIV 646
KL KA +L I +LDE ++++
Sbjct: 657 SKLAKAQELGIPVLDEAGLIELI 679
>gi|327399096|ref|YP_004339965.1| DNA ligase [Hippea maritima DSM 10411]
gi|327181725|gb|AEA33906.1| DNA ligase [Hippea maritima DSM 10411]
Length = 667
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 276/663 (41%), Positives = 413/663 (62%), Gaps = 35/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ +L+K+LH HN YY+ D+PIISD++YD +L ELK++EE YP+ ++S T VG
Sbjct: 9 RIEQLRKKLHYHNYRYYVLDDPIISDSEYDMMLKELKELEESYPQFYDENSPTVRVGGAP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKL--TKNIEYIAELKFDGIAVNLR 134
+ V H M+SL++GF D D+ F++++ LKL K I Y E KFDG++++L
Sbjct: 69 LNKFEKVEHKIPMLSLEDGFDDNDIREFDRKVKRFLKLPEDKKIAYSVEPKFDGLSIDLI 128
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194
YE G L ASTRGDG +GEN+T NI I +PLVL I PP L+V+ EVL+ K++F ++
Sbjct: 129 YENGKLTVASTRGDGYVGENVTQNIKTIRNVPLVLPIDTPPMYLDVQGEVLLTKEEFERI 188
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP-SSHSELL 253
N+ R GL F NPRNAAAG +RQL+PK + L + + ++ G S + L
Sbjct: 189 NQERLKNGLNVFANPRNAAAGSVRQLDPKETAKRNLIMIMYYIRQIEGYKRKILSQHDAL 248
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
+++G ++ G+ + IE+ K++ IKR LPYE+DG+V K++ Q+ LG T
Sbjct: 249 EALKEMGFPTSSLNRLVVGIEEAIEYKKELEIKRETLPYELDGIVIKVDDFELQESLGAT 308
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
+++PR+A+A+KF +++A TKIK I + +GRTGI+TPVA+L+PV I G+ ++RA+LH E
Sbjct: 309 TKSPRWAIAFKFPAQQATTKIKDIEVNVGRTGILTPVAILEPVNIGGVVVSRASLHTMDE 368
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
I +K+I+IGD V V R+G+VIP++ + LR K F +P CP+C S++ ++
Sbjct: 369 IEKKDIRIGDVVFVQRAGDVIPEVVKPVKDLRDGSEKKFVMPEKCPVCGSRV--VKDGAY 426
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
RCS I C K ++HF SRKAMNI G G K+IE+LV+ IV D+Y+++ + L
Sbjct: 427 YRCSN--INCPKVLKESIKHFVSRKAMNIDGFGDKLIEQLVDKGIVKNIADIYELDKETL 484
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
+ LDRV KLA N++ +IQ+SK TTF++FIYALGIRHVGE AK LA FKNLE + KAT
Sbjct: 485 MGLDRVGEKLAENLISSIQRSKGTTFAKFIYALGIRHVGEFVAKLLAERFKNLENLKKAT 544
Query: 554 EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------- 594
+++LL I IG + + F ++P + I +L GI++
Sbjct: 545 KDELLAIDGIGEEIADSVVSFFSEPKNLQTIDKLLYYGIHFEDKTKEHSRIAGKSFVFTG 604
Query: 595 -LNNP--------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
L+ P +GG V N +SKN +YLV G+ PG KL+KA + + ++ E+ ++
Sbjct: 605 TLSKPREYFKELIEERGGIVRNSVSKNLDYLVVGENPGSKLKKAKQNGVSVISEEELYRL 664
Query: 646 VKG 648
++G
Sbjct: 665 LEG 667
>gi|414155026|ref|ZP_11411342.1| DNA ligase [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
gi|411453339|emb|CCO09246.1| DNA ligase [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
Length = 669
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 258/667 (38%), Positives = 399/667 (59%), Gaps = 38/667 (5%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
++ R L++E+ HN YY+ D P+I+D++YD+L+ EL ++E +YP L+T DS TQ V
Sbjct: 5 EIKARAEALRREIEHHNYLYYVLDRPVITDDQYDRLMQELIRLEAEYPSLVTPDSPTQRV 64
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
G + + V H M+SL N FS+ D+ F++R+ L + +EY+ ELK DG+A++
Sbjct: 65 GGQVQQGFQSVPHRVPMLSLANAFSEADLREFDRRVCGNLP-GEPVEYVVELKIDGLAIS 123
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
L YE G L + +TRGDG GE+IT N+ I IPL L P LEVR E + K F
Sbjct: 124 LTYENGLLVRGATRGDGAQGEDITANLRTIKAIPLRLKEAVP--FLEVRGEAYMPKDSFS 181
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
+LN+ R G F NPRNAAAG LRQL+P + + L + + +G L G + SSH+
Sbjct: 182 RLNEARQEAGEPLFANPRNAAAGSLRQLDPAVTAARQLSIYMYAIGHLEGRQI-SSHAAG 240
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
L W +++GL + Y V + ++I++ K KRF LPY IDG+V K+N L Q++LG
Sbjct: 241 LTWLRQLGLRVNEHYRVCRDIEQVIDYCAKWQEKRFQLPYAIDGLVIKVNSLDQQQRLGA 300
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
T ++PR+A+AYKF +++A++ IK I +++GRTG++TP A+L+PV + G T+++ATLHNE
Sbjct: 301 TLKSPRWAIAYKFPAEQAVSTIKDIIVRVGRTGVLTPTAVLEPVQLAGTTVSKATLHNED 360
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
I +K+I+IGD +V ++G++IP++ R K+F +P CP C + +
Sbjct: 361 VIRQKDIRIGDKALVQKAGDIIPEVVQVFPEQRNGKEKVFTMPATCPACGAPVTRAAGEA 420
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
RC+ + IA + G+ HF SR AM+I GLG+ ++ +L+ A +V A DLY + +++
Sbjct: 421 AHRCTNRYCPAIA--REGIIHFVSRGAMDIAGLGESIVTQLIKAGLVRDAADLYSLRYED 478
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
L++L+R+ + ++N+L AI+ SK + +R ++ALGIRHVGE AK LA +F +L + A
Sbjct: 479 LIKLERMGARSSHNLLQAIEASKSNSLARLLFALGIRHVGERAAKVLAQHFGSLTAIMNA 538
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI--YWLNNPNTK--------- 601
T E L IP+IG ++ + + +P HR L+ +L + G+ PN
Sbjct: 539 TFEDLTVIPEIGPKIAESVVDYFARPDHRRLVERLAEAGVNMQEAGQPNPAELPLAGKTF 598
Query: 602 ---------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
GGKV +SK T+YLV G+ PG K EKA +L I IL+E
Sbjct: 599 VVTGTLAAFSRQAAQAAIEQLGGKVAGSVSKKTDYLVVGENPGSKYEKARQLGIAILNEA 658
Query: 641 NFVKIVK 647
F+ ++K
Sbjct: 659 EFIALLK 665
>gi|410616776|ref|ZP_11327761.1| DNA ligase [Glaciecola polaris LMG 21857]
gi|410163617|dbj|GAC31899.1| DNA ligase [Glaciecola polaris LMG 21857]
Length = 677
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 259/663 (39%), Positives = 395/663 (59%), Gaps = 35/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+T+L ++ +N YY+ DNP + D +YD+L+ EL IE+ YP+L + DS +Q VG
Sbjct: 10 RLTQLINTINEYNYQYYVLDNPTVPDAEYDRLMRELLDIEQTYPDLRSSDSPSQKVGGTA 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F ++D++ F KRI + LK T I + E K DG+AV++ YE
Sbjct: 70 LSAFEQVEHEVPMLSLDNAFDEQDMVAFEKRIKDRLKNTDKIGFSCEPKLDGLAVSILYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG +GENITTN+ I +PL L P LEVR EV++ + F+ LN+
Sbjct: 130 NGKLVRAATRGDGRVGENITTNVRTIANVPLSLRGDSYPSRLEVRGEVIMTRAGFVTLNE 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP--SSHSELLN 254
+ + G K F NPRNAAAG LRQL+P+I + L F+ + +G + P ++HS L
Sbjct: 190 AQINKGKKPFVNPRNAAAGSLRQLDPRITAGRPLLFYCYSLGLVENEQQPLDTTHSSRLK 249
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
+ GL + E +G + +E++ KI R L Y+IDGVV+K++ + Q+ LGF +
Sbjct: 250 QLSEWGLPLSKELETATGAQECLEYFHKIGELRSQLSYDIDGVVFKVDDIEMQQALGFVA 309
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+A+KF ++E ++ + + Q+GRTG ITPVA L P + G+T++ ATLHN+ EI
Sbjct: 310 RAPRWAIAHKFPAQEEISSLLDVEFQVGRTGAITPVARLVPTFVGGVTVSNATLHNQDEI 369
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
R I IGDTV++ R+G+VIP+I + + RP D++ P CP+C+S I +E +A
Sbjct: 370 NRLGIMIGDTVIIRRAGDVIPQIVAIVTEKRPADAREITFPTACPMCDSAIEKLEGEAVA 429
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+G + C AQRK ++HF+SRKA+++ GLG K+IE+LV+ ++V + D + ++ L
Sbjct: 430 RCTGG-LYCKAQRKEAMKHFASRKALDVDGLGDKLIEQLVDGDMVKSPADFFSLDIAPLS 488
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
++R+ K A N++ A++ SK TT ++F+YALGIR VGE TA+ LA +F LE + +A
Sbjct: 489 SMERMGEKSAVNLVNALEHSKKTTLAKFLYALGIREVGEATAQNLALHFLTLEAIEQADI 548
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------- 594
E L +P +G + F + + +I LRD G++W
Sbjct: 549 ESLQTVPDVGVIVAQHVFNFFREAHNLEVIKALRDAGVHWPTIEKIALDQLPLAGQVYVL 608
Query: 595 --------LNNPNTK----GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
N K G KV +S T+ LV G+K G KL KA L +K+++E
Sbjct: 609 TGTLNVMDRNQAKAKLQALGAKVSGSVSAKTDCLVAGEKAGSKLTKAQDLGVKVINEDGM 668
Query: 643 VKI 645
+ +
Sbjct: 669 LAM 671
>gi|254508455|ref|ZP_05120575.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus 16]
gi|219548665|gb|EED25670.1| DNA ligase, NAD-dependent [Vibrio parahaemolyticus 16]
Length = 669
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 268/667 (40%), Positives = 399/667 (59%), Gaps = 34/667 (5%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
++ ++ +L++ LH H I YY+ D P I D +YD+L+ EL ++E + P L++ DS +Q V
Sbjct: 4 QIQEKLNQLRESLHYHGIKYYVEDAPEIPDAEYDRLMRELIELEAQNPNLISVDSPSQRV 63
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
G + V H M+SLDN F D+++ F+KR+ + + + + E K DG+AV+
Sbjct: 64 GGAPLDGFTPVAHEIPMLSLDNAFDDDELNAFHKRMLDRVAGSSVEAFCCEPKLDGLAVS 123
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
L YE G L QA+TRGDG GENIT N+ I IPL L + P +EVR EV + K F
Sbjct: 124 LLYENGVLVQAATRGDGATGENITENVRTIKAIPLKLCGEGWPARIEVRGEVFMPKAGFE 183
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
KLN++ G K F NPRNAAAG LRQL+ +I + L F+A+ VG + G + SH E
Sbjct: 184 KLNEHALKKGEKVFVNPRNAAAGSLRQLDSRITAKRPLSFYAYSVGVVEGAALSESHYER 243
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
+ GL +C E + ++ + +YK I +R L YEIDGVV K++ + Q++LGF
Sbjct: 244 FLQLKSWGLPMCPETRQVESLDDVKAYYKDILQRRDQLAYEIDGVVIKVDSIELQERLGF 303
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
+RAPR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 304 VARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNAD 363
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
EI R ++IGD+VV+ R+G+VIP+I S + RP+D++ P+ CP+CNS++ +E
Sbjct: 364 EIARLGVKIGDSVVIRRAGDVIPQIVSVVAERRPDDAREIVFPSQCPVCNSQVERVEGEA 423
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
+ARCSG + C AQRK L+HF SRKA+++ GLG K+IE+LV+ +V T DL+K++
Sbjct: 424 VARCSGGLV-CQAQRKEALKHFVSRKALDVDGLGVKVIEQLVDREMVETPADLFKLSAGI 482
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
+ LDR+ K A N++ A+ K+K TT +RF+Y+LGIR VGE TA LA +FK L+ + A
Sbjct: 483 ITVLDRMGPKSAQNVVDALAKAKQTTLARFLYSLGIREVGEATAANLALHFKTLDAIKAA 542
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------ 594
+ EQL+ +P IG F Q ++ +I L GI W
Sbjct: 543 SHEQLIAVPDIGDIVASHITAFFAQDNNQSVIDDLIAQGICWPDIEEKGEDVPQPLAGKT 602
Query: 595 ---------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
L+ + K G KV +SK T+ L G+ G KL KA +L ++I E
Sbjct: 603 VVLTGSLSQLSRNDAKAALQNLGAKVTGSVSKKTDILFAGENAGSKLSKAQELGVEIRTE 662
Query: 640 KNFVKIV 646
++ + ++
Sbjct: 663 QDLIDLL 669
>gi|120554094|ref|YP_958445.1| NAD-dependent DNA ligase [Marinobacter aquaeolei VT8]
gi|166215819|sp|A1TZT9.1|DNLJ_MARAV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|120323943|gb|ABM18258.1| DNA ligase, NAD-dependent [Marinobacter aquaeolei VT8]
Length = 678
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 266/668 (39%), Positives = 391/668 (58%), Gaps = 33/668 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV L+ L HN YY+ D+P I D +YD+L EL+K+E ++PEL T+DS T+ VG
Sbjct: 11 RVDSLRATLEDHNYYYYVQDDPRIPDAEYDRLFRELQKLEAEHPELATEDSPTRRVGSSA 70
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SLDN FS++++ F++R+ + L IEY+ E K DG+AV+L YE
Sbjct: 71 ETSFEEVIHRLPMLSLDNAFSEDELRDFDRRVRDRLGADGAIEYVCEPKLDGLAVSLHYE 130
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+IT NI I +PL L P+L+EVR EV + + F KLN+
Sbjct: 131 NGTLTRAATRGDGYTGEDITANIRTIPSVPLKLRGSGYPDLVEVRGEVYMPRAGFEKLNE 190
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQ + + L A+ + +P +H + L
Sbjct: 191 RLAEQGEKTFVNPRNAAAGSLRQKKSTVTARRPLELCAYSMAVTDESVLPETHWDSLQLV 250
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ G I E GV ++ Y ++ KR +LPYEIDG+V+K+N L Q++LGF SRA
Sbjct: 251 RDWGFRINPEMRKAEGVEACLDAYNELMAKRDSLPYEIDGIVFKVNRLDLQQELGFVSRA 310
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E LT I+ + Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R
Sbjct: 311 PRWAIAHKFPAQEELTIIEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNMDEIRR 370
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++ IGDTV + R+G+VIP++ + RP ++ + ++P CP+C S I+ IE +ARC
Sbjct: 371 LDVHIGDTVFIRRAGDVIPQVVKVVPEKRPAEAPMVEMPEHCPVCGSDIVQIEGEAVARC 430
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG + C AQRK ++H++SRKAM+I GLG ++IE LV+ +V T DLY++ + L
Sbjct: 431 SGG-LYCPAQRKEAIRHYASRKAMDIEGLGDRLIEVLVDEGMVSTVADLYRLTKFQIASL 489
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ +K A N++ AI +S+ RF+YALGIR VGE TAK LA +F LE + A EE
Sbjct: 490 ERMGDKSAANLIAAIDRSREPVLWRFLYALGIREVGEATAKGLAAHFGTLEAISAADEET 549
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F +QP ++ ++ L++ G+ W
Sbjct: 550 LQTVPDVGPIVAGHIRSFFDQPHNQETLAALKEAGVTWQEEQVLSADEQPLNGQTWVLTG 609
Query: 595 ----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
+ K G KV +SK T +V G+ G KL KA +L + +LDE+
Sbjct: 610 TLSGMTRDQAKEKLEQLGAKVAGSVSKKTACVVAGEAAGSKLAKAEQLGVPVLDEEGLAN 669
Query: 645 IVKGFSTE 652
+++ E
Sbjct: 670 LLREHGIE 677
>gi|292488952|ref|YP_003531839.1| DNA ligase [Erwinia amylovora CFBP1430]
gi|292900089|ref|YP_003539458.1| DNA ligase [Erwinia amylovora ATCC 49946]
gi|428785903|ref|ZP_19003392.1| DNA ligase [Erwinia amylovora ACW56400]
gi|291199937|emb|CBJ47061.1| DNA ligase [Erwinia amylovora ATCC 49946]
gi|291554386|emb|CBA21816.1| DNA ligase [Erwinia amylovora CFBP1430]
gi|426275767|gb|EKV53496.1| DNA ligase [Erwinia amylovora ACW56400]
Length = 670
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 260/671 (38%), Positives = 395/671 (58%), Gaps = 38/671 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
L ++T L+ L + Y++ D P + D +YD+L+ EL+++E +YPELLT DS TQ
Sbjct: 1 MESLQDKITHLRTLLRHYEHQYHVLDAPTVPDAEYDRLMGELRELETQYPELLTSDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG V H M+SLDN F +E + FNKR+ + LK T +I + ELK DG+A
Sbjct: 61 RVGAAPLSAFGQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDDITFCCELKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GE+IT N+ I IPL L+ PE LEVR EV +
Sbjct: 121 VSLLYEKGQLVRAATRGDGTTGEDITANVRTIRAIPLRLSGDSIPERLEVRGEVFMPLAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F ++N+ G K F NPRNAAAG LRQL+P++ + L FF +G+G L G MP SH
Sbjct: 181 FEQMNQQARSCGQKVFANPRNAAAGSLRQLDPRVTAKRPLTFFCYGLGLLEGGEMPRSHM 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
L ++ GL + + ++++FY ++ R L ++IDGVV K++ L Q++L
Sbjct: 241 ARLQQFKAWGLPVSDRVRLSHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDSLELQEQL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+A+KF ++E +T ++ + Q+GRTG +TPVA L+PVL+ G+ ++ ATLHN
Sbjct: 301 GFVARAPRWAIAFKFPAQEQITTVRDVEFQVGRTGAMTPVARLEPVLVAGVMVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R ++IGD VV+ R+G+VIP++ S + + +D+ P CPIC S I +E
Sbjct: 361 ADEIERLGLKIGDRVVIRRAGDVIPQVMSVVET--GDDALEIAFPTHCPICGSDIERVEG 418
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
++ARC+G I C AQRK L+HF SR+A++I G+G+K+I++LV+ V +L+++
Sbjct: 419 EVVARCTGGLI-CGAQRKGALKHFVSRRALDIDGMGEKIIDQLVDKEYVKNPAELFELTA 477
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L LDR+ K A N++ A+ K+K TTF+RF+YALGI VGE TA LA +F LE +
Sbjct: 478 GKLTGLDRMGPKSAQNVVNALAKAKQTTFARFLYALGISEVGEATAANLAAHFGTLEALM 537
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRD-VGIYW----------LNNP- 598
A + L+ + +G F+++ +R +I L D G+ W +++P
Sbjct: 538 TADLDALMAVQDVGKVVASHVRNFLDEESNREIIRLLVDKAGVNWPQVVVVKAGEIDSPF 597
Query: 599 -----------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIK 635
G KV +SK T+ ++ G+ G KL KA +L I
Sbjct: 598 AGKTVVLTGSLSILSRDEAKDRLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGID 657
Query: 636 ILDEKNFVKIV 646
++DE+ ++++
Sbjct: 658 VIDEQEMIRLL 668
>gi|270262950|ref|ZP_06191221.1| DNA ligase, NAD-dependent [Serratia odorifera 4Rx13]
gi|270043634|gb|EFA16727.1| DNA ligase, NAD-dependent [Serratia odorifera 4Rx13]
Length = 673
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 260/666 (39%), Positives = 395/666 (59%), Gaps = 37/666 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P + D +YD+L+ EL+++E +PEL+T DS TQ VG
Sbjct: 7 QINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMNELRELENAHPELITADSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F +E + F KR+ + LK ++ + + ELK DG+AV+L YE
Sbjct: 67 LAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKSSEPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT+N+ I IPL L+ P LEVR EV + + F ++N+
Sbjct: 127 DGELVRAATRGDGTTGENITSNVRTIRAIPLRLSGDNIPRRLEVRGEVFMPQAGFEQMNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
K F NPRNAAAG +RQL+P+I + L FF +GVG L G +P SH + L +
Sbjct: 187 EARRKDGKIFANPRNAAAGSIRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHWQRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + +G ++++ FY+++ R L ++IDGVV KI+ + Q+ LGF +RA
Sbjct: 247 KNWGLPVSDRAKCCTGSDEVLAFYRQVEQDRAQLGFDIDGVVVKIDDIDLQETLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIPK+ I RP D++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDTVIVRRAGDVIPKVVGVIEDRRPQDAREIVFPLHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+IE+LV V DL++++ L L
Sbjct: 427 TGGLI-CAAQRKEALKHFVSRRAMDVDGMGDKIIEQLVEKEYVKNPADLFRLSAGILTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++KSK TTF+RF+YALGIR VGE TA LA +F L ++ A +
Sbjct: 486 DRMGPKSAQNLVNALEKSKRTTFARFLYALGIREVGEATAANLAAHFGELPKLYAADIDA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL--RDVGIYW----------LNNP------ 598
L +P +G K F+++ L++ +I +L ++GI W +++P
Sbjct: 546 LKQVPDVGEVVAKHVRHFLDEELNQKVIDELIGAEIGINWPEVVVVAAEEIDSPFAGKTV 605
Query: 599 ------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 VLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIAVIDEA 665
Query: 641 NFVKIV 646
++++
Sbjct: 666 EMIRLL 671
>gi|307546309|ref|YP_003898788.1| NAD-dependent DNA ligase [Halomonas elongata DSM 2581]
gi|307218333|emb|CBV43603.1| DNA ligase, NAD-dependent [Halomonas elongata DSM 2581]
Length = 700
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 257/661 (38%), Positives = 382/661 (57%), Gaps = 33/661 (4%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+ EL N YY+ D P ++D YD+ L L++IE +YPEL+ DS TQ VG +
Sbjct: 33 LRAELDDANHRYYVLDEPRMTDADYDRKLRRLQEIETEYPELVRPDSPTQRVGAAPADGF 92
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-KNIEYIAELKFDGIAVNLRYEYGY 139
+ H M+SLDN F ++++ F KR+ + L++ ++I + E K DG AV+L YE G
Sbjct: 93 PEIEHAVPMLSLDNAFDEDELAAFVKRVADRLEIDGESIAFCCEPKLDGAAVSLVYERGE 152
Query: 140 LKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRY 199
L TRGDG GE IT+N+ + IPL L ++ P++LEVR EV + DF +N
Sbjct: 153 LTAGVTRGDGRTGEGITSNLRTLKSIPLKLRGRHWPDVLEVRGEVTMRHADFEAMNDKAR 212
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKI 259
G K F NPRNAAAG LRQL+P+I + L F A+ + +SHS L+ +
Sbjct: 213 EEGGKVFANPRNAAAGSLRQLDPRITDQRPLEFSAYQAARIEPDAGDASHSALMARLSEF 272
Query: 260 GLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRF 319
G E V+ G +IE+ + + KR L Y+IDGVV K++ L Q++LGF +RAPR+
Sbjct: 273 GFRTSAELRVVRGTEGVIEYCRALGEKRDALGYDIDGVVIKVDDLRLQRELGFVARAPRW 332
Query: 320 ALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNI 379
A+A+KF ++E +T++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R +
Sbjct: 333 AIAFKFPAQEQVTRLNDVEFQVGRTGAITPVARLEPVSVAGVTVSNATLHNADEIARLGV 392
Query: 380 QIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGS 439
IGDTV + R+G+VIP++ RP+D++ P CP+C+S+I +E +ARCSG
Sbjct: 393 MIGDTVAIRRAGDVIPQVVRVQEEDRPDDAREIVFPERCPVCDSQIERLEDEAVARCSGG 452
Query: 440 WIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRV 499
+ C AQRK L+HF+SR+A++I GLG+K+I++LV + V T DL+ + + L L R+
Sbjct: 453 -LYCAAQRKEALKHFASRRALDIEGLGEKLIDQLVELDWVQTPADLFALEAERLATLPRM 511
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
K + N++ A++K+K TT RFI+ALGIR VGE TA LA +F LE + A + L
Sbjct: 512 GEKSSQNLVTALEKAKATTLPRFIFALGIREVGEATAANLARHFGTLEALMDAERDALEQ 571
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------- 594
+ +G F QP +R I+ LR G++W
Sbjct: 572 VDDVGPIVAAHVHTFFRQPHNRDTIAALRQAGVHWEEAEVEIGPTLLEGQSWVLTGTMES 631
Query: 595 LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 648
+ K G KV +SK T LV G+ G KL KA +L ++++DE F++ ++
Sbjct: 632 MTRDEGKARLQALGAKVAGSVSKKTACLVAGEAAGSKLTKAEQLGVEVIDEATFLERLEA 691
Query: 649 F 649
+
Sbjct: 692 W 692
>gi|348589846|ref|YP_004874308.1| DNA ligase [Taylorella asinigenitalis MCE3]
gi|347973750|gb|AEP36285.1| DNA ligase [Taylorella asinigenitalis MCE3]
Length = 682
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 276/674 (40%), Positives = 411/674 (60%), Gaps = 52/674 (7%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
LK ++ H+ AYY+ DNP ISD +YD L+ L + E +PE +T DS +Q VG GE
Sbjct: 12 LKTQIAEHDRAYYIEDNPKISDAEYDGLMRRLLEYESLHPEWVTPDSPSQRVG---GEAL 68
Query: 81 K---YVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
K V HT M+SL N F+ E++ F R+ E T++IE+ E KFDG+A+ LRYE
Sbjct: 69 KIFNSVRHTVPMLSLGNVFNTEELTAFYNRMV-EACGTRDIEFNCEPKFDGLAITLRYEQ 127
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYP---PELLEVRCEVLIYKKDFIKL 194
G LK A+TRGDG GE++T + I +P+ LN PE++EVR E L++K+DF KL
Sbjct: 128 GLLKYAATRGDGQTGEDVTAQVKTIRTVPIKLNRPNEGTLPEVIEVRGEALMFKRDFEKL 187
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPS---SHSE 251
K++ G++ F NPRNAAAG LRQL+PK+ + L F+A+G+GE + N + SE
Sbjct: 188 VKFQKEQGVQTFANPRNAAAGSLRQLDPKVTSKRNLRFYAYGLGEFKSSNSKGIFKNQSE 247
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
LL+++ +G ++ V+ G+ L+ F++ + KR LP++IDGVVYK+N S Q+K+G
Sbjct: 248 LLDYFLSLGFNVTEHREVVYGMEGLLGFFETMKEKREALPFDIDGVVYKVNDFSLQEKIG 307
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
+ S+APRFA+A+KF +++ TK+ I +Q+GRTG +TPVA L+PV + G+T+ +ATLHNE
Sbjct: 308 YISKAPRFAIAHKFAAEQMQTKLLDIEVQVGRTGALTPVAKLEPVFVGGVTVQKATLHNE 367
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI RKN+ IGDTV+V R+G+VIP++ S+ LRP D++ F +P CP+C S + E
Sbjct: 368 DEIARKNLMIGDTVIVRRAGDVIPEVMESLPELRPADARKFIMPTSCPVCGSAVEKPEGE 427
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC+G C AQ + H SRKA+NI GLG K I+KLV++ + DLY+++
Sbjct: 428 AVARCTGGLF-CAAQVTQSIIHAVSRKALNIDGLGDKHIQKLVSSGKINHLDDLYRLSVS 486
Query: 492 NLLRLDRVSNK-----LANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546
+L L R + + LA + IQ SK TT SRF++ALGIRHVGETTA++LA +F +L
Sbjct: 487 DLNVLGRNAEESKLEVLAPTLHARIQSSKSTTLSRFLFALGIRHVGETTARDLAKHFGDL 546
Query: 547 ECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI-------------- 592
+ + A +L+ +P +G + F +P +R +I L +G
Sbjct: 547 QSIMTADTSKLIEVPNVGEVMADSIHNFFKEPHNREVIENLLTLGFELKAEEENISINPA 606
Query: 593 -------------YWLNNPNTK-----GGKVVNFISKNTNYLVKGQKPG-KKLEKAIKLN 633
W + ++ GG++ + +SK T+YL+ G +PG KL+KA +L
Sbjct: 607 IAGHSFVVTGTLESWKRDEISQVIISAGGRISSSVSKKTDYLLIGSEPGDSKLKKAQELG 666
Query: 634 IKILDEKNFVKIVK 647
KIL E F +++
Sbjct: 667 TKILTESEFKALLQ 680
>gi|124267002|ref|YP_001021006.1| DNA ligase (NAD+) [Methylibium petroleiphilum PM1]
gi|166215820|sp|A2SGT2.1|DNLJ_METPP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|124259777|gb|ABM94771.1| DNA ligase (NAD+) [Methylibium petroleiphilum PM1]
Length = 677
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 263/666 (39%), Positives = 401/666 (60%), Gaps = 46/666 (6%)
Query: 15 SFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGL 74
+ R +L+++L H YY+ D P I D +YD+L EL+ +E +P L T DS TQ V
Sbjct: 9 AARAAQLREQLEYHAHRYYVLDAPEIPDAEYDRLFTELQALEAAHPGLRTPDSPTQRV-- 66
Query: 75 VGG--ENSKYVHHTFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFD 127
+G E V H M+S+ + + + F+ + N LKL + + Y AELKFD
Sbjct: 67 IGAVLEGLSAVRHAVPMLSIKTETDTTPTGALKFDAAVRNALKLPPDAPPLRYAAELKFD 126
Query: 128 GIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVL-NIKYPPELLEVRCEVLI 186
G+A+NLRY+ G L QA+TRGDG GE++T + I +P L I P +LEVR EV +
Sbjct: 127 GLAINLRYQAGRLVQAATRGDGETGEDVTHTVGTIESVPKQLRGITAP--VLEVRGEVFM 184
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
+ DF LN+ + GLK F NPRNAAAGI+RQL+ I + + L FFA+G+G+++G ++P
Sbjct: 185 RRDDFEALNERQREAGLKTFVNPRNAAAGIVRQLDASIARQRPLSFFAYGLGDVQGWDVP 244
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
+H+ LL+ +GL + +V+ G L F+ I +R LP++IDGVVYK++ +
Sbjct: 245 PTHAGLLDALAALGLPVDAHRTVVEGGEALAAFHAGIAAERDALPFDIDGVVYKVDERAL 304
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q++LGF SR PR+A+A+K+ ++E T++ I IQ+GRTG +TPVA L+PV + G T++ A
Sbjct: 305 QQQLGFKSREPRWAVAHKYPAQEQSTQLAGIEIQVGRTGKLTPVAKLQPVFVGGTTVSNA 364
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKII 426
TLHN E+ RK I+IGDTV+V R+G+VIP++ + R F++P CP+C S+ +
Sbjct: 365 TLHNRFELRRKGIRIGDTVIVRRAGDVIPEVVGRVPVPRTAYIPNFRMPRACPVCGSQAL 424
Query: 427 YIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY 486
++ RCSG C AQRK L HF+ R+ M+I GLG K++E+LV+ I+ T +LY
Sbjct: 425 RERGSVDYRCSGGLF-CAAQRKQALLHFAGRRMMDIEGLGDKLVEQLVDGGIIRTLPELY 483
Query: 487 KINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546
++ L+ L+R+ +K A N++ A++ SK TT +RF+++LGIRH+GE TAK+LA +F L
Sbjct: 484 RLGVAKLVALERMGDKSAANLVAALEASKATTLARFLFSLGIRHIGEATAKDLARHFGAL 543
Query: 547 ECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPN------- 599
+ + A+ EQLL + +G ++ F +QP +R ++ QLR G++W +
Sbjct: 544 DRVMDASVEQLLEVNDVGPVVAQSLRTFFDQPHNREVVEQLRAAGVHWDEHSGEADLTPR 603
Query: 600 --------------------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLN 633
GGKV +SK T+Y+V G++ G KLEKA L
Sbjct: 604 PLAGKTFVLTGTLPSLGREAAKELIEAAGGKVAGSVSKKTDYVVAGEEAGSKLEKAQALG 663
Query: 634 IKILDE 639
+ ++DE
Sbjct: 664 VAVIDE 669
>gi|251788438|ref|YP_003003159.1| NAD-dependent DNA ligase LigA [Dickeya zeae Ech1591]
gi|247537059|gb|ACT05680.1| DNA ligase, NAD-dependent [Dickeya zeae Ech1591]
Length = 682
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 268/682 (39%), Positives = 403/682 (59%), Gaps = 37/682 (5%)
Query: 1 MSFHAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYP 60
MS + N R+ EL+ + H+I Y+ D+P I D++YD L EL ++E ++P
Sbjct: 1 MSVKRANQQNVDTARRRIKELRILIRHHDIKYHSEDDPEILDSEYDLLKRELSELEIQHP 60
Query: 61 ELLTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEY 120
L+T DS TQ VG + H M+SLDN F+++ F+KR++ LK K + +
Sbjct: 61 FLVTSDSPTQRVGAEPLVAFGTIKHEVPMLSLDNVFNEDGFKAFSKRVSERLKNDKELIF 120
Query: 121 IAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEV 180
ELK DG+AV+L YE G L++ASTRGDG GENIT+N+ I IPL L P+ LEV
Sbjct: 121 CCELKLDGLAVSLLYENGILERASTRGDGTTGENITSNVRTIRAIPLRLEGDNIPQRLEV 180
Query: 181 RCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL 240
R EV + K F LN+ G K F NPRNAAAG LRQL+P++ + L F +GVG +
Sbjct: 181 RGEVFMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRVTATRPLTFLCYGVGLV 240
Query: 241 RGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYK 300
G +P +H + L ++ GL + + +G + +++FY+++ +R L ++IDGVV K
Sbjct: 241 EGGALPDTHWQRLMQFRDWGLPVSDRIRLCTGSDAVLDFYRQVEQERGALGFDIDGVVIK 300
Query: 301 INCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDG 360
+N L+ Q++LGF +RAPR+A+A+KF ++E LT ++ + Q+GRTG ITPVA L+PV + G
Sbjct: 301 VNELTLQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVARLEPVAVAG 360
Query: 361 ITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPI 420
+ ++ ATLHN EI R +QIGD V V R+G+VIP+I S +LS RP D++ P CP+
Sbjct: 361 VVVSNATLHNADEIERLGVQIGDRVAVRRAGDVIPQIVSVVLSERPADARPVVFPTHCPV 420
Query: 421 CNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVV 480
C S + +E +ARC+G C AQRK L+HF SR+A+++ G+G K+I++LV+ V
Sbjct: 421 CGSDVERVEGEAVARCTGGLF-CAAQRKEALKHFVSRRALDVEGMGDKIIDQLVDKEYVK 479
Query: 481 TAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELA 540
T DL +++ L RLDR+ K A N++ A+ K+K TTF+RF+YALGIR VGE TA LA
Sbjct: 480 TPADLLRLDIGILTRLDRMGPKSAQNLVNALNKAKSTTFARFLYALGIRDVGEATAANLA 539
Query: 541 NYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQL--RDVGIYW---- 594
+F LE + A + L + +G F+++ ++ +I +L DVG++W
Sbjct: 540 AHFGTLEALQAADLDALQQVQDVGIVVATHVRNFLDEAHNQQVIQELIGDDVGLHWPDPV 599
Query: 595 ------------------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGK 624
L+ K G KV +SK T+ ++ G+ G
Sbjct: 600 VVDVEASTSPFAGKTVVLTGSLSLLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGS 659
Query: 625 KLEKAIKLNIKILDEKNFVKIV 646
KL KA +L I ++DE ++++
Sbjct: 660 KLTKAQELGIDVIDEAEMMRLL 681
>gi|333928474|ref|YP_004502053.1| DNA ligase [Serratia sp. AS12]
gi|333933427|ref|YP_004507005.1| DNA ligase [Serratia plymuthica AS9]
gi|386330297|ref|YP_006026467.1| DNA ligase [Serratia sp. AS13]
gi|333475034|gb|AEF46744.1| DNA ligase [Serratia plymuthica AS9]
gi|333492534|gb|AEF51696.1| DNA ligase [Serratia sp. AS12]
gi|333962630|gb|AEG29403.1| DNA ligase [Serratia sp. AS13]
Length = 673
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 260/666 (39%), Positives = 393/666 (59%), Gaps = 37/666 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P + D +YD+L+ EL+++E +PEL+T DS TQ VG
Sbjct: 7 QINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMHELRELENAHPELITADSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F +E + F KR+ + LK + + + ELK DG+AV+L YE
Sbjct: 67 LAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKSSDPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT+N+ I IPL L+ P LEVR EV + + F ++N
Sbjct: 127 DGELVRAATRGDGTTGENITSNVRTIRAIPLRLSGDNIPRRLEVRGEVFMPQAGFEQMND 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
K F NPRNAAAG +RQL+P+I + L FF +GVG L G +P SH + L +
Sbjct: 187 EARRKDGKIFANPRNAAAGSIRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHWQRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + +G ++++ FY+++ R L ++IDGVV KI+ + Q+ LGF +RA
Sbjct: 247 KNWGLPVSDRAKCCTGSDEVLAFYRQVEQDRAQLGFDIDGVVVKIDDIDLQETLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIPK+ I RP D++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDTVIVRRAGDVIPKVVGVIEDRRPQDAREIVFPLHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+IE+LV V DL+ ++ L L
Sbjct: 427 TGGLI-CAAQRKEALKHFVSRRAMDVDGMGDKIIEQLVEKEYVKNPADLFHLSAGILTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++KSK TTF+RF+YALGIR VGE TA LA +F L+ ++ A +
Sbjct: 486 DRMGPKSAQNLVNALEKSKRTTFARFLYALGIREVGEATAANLAAHFGELQKLYDADIDA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL--RDVGIYW----------LNNP------ 598
L +P +G K F+++ L++ +I +L ++GI W +++P
Sbjct: 546 LKQVPDVGEVVAKHVRHFLDEELNQKVIDELIGAEIGINWPEVVVVAAEEIDSPFAGKTV 605
Query: 599 ------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 VLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIAVIDEA 665
Query: 641 NFVKIV 646
++++
Sbjct: 666 EMIRLL 671
>gi|300717845|ref|YP_003742648.1| DNA ligase [Erwinia billingiae Eb661]
gi|299063681|emb|CAX60801.1| DNA ligase [Erwinia billingiae Eb661]
Length = 672
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 256/665 (38%), Positives = 393/665 (59%), Gaps = 36/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++T L+ L H Y++ D+P + D +YD+L+ EL+++E+ +PEL+T DS TQ VG
Sbjct: 7 KITALQTTLRHHEYQYHVMDDPEVPDAEYDRLMRELRELEQAHPELVTADSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F +E + F KR+ + LK T +I + ELK DG+AV+L YE
Sbjct: 67 LGAFEQVRHEVPMLSLDNAFDEESYLAFYKRVQDRLKNTDDITFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT N+ I IPL L+ + P +EVR EV + F LN
Sbjct: 127 DGLLVRAATRGDGTTGENITANVRTIRAIPLRLHGENIPSRVEVRGEVFMPLAGFEALNN 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +G G L G MP SH L +
Sbjct: 187 EARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEMPRSHMARLQQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + +++ FY+++ R L ++IDGVV K++ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRIKLCHTAEEVLAFYRQVEQDRPTLGFDIDGVVIKVDSQDLQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD V++ R+G+VIP++ I S RP+D++ P CP+C S + +E ++ARC
Sbjct: 367 LGLRIGDRVIIRRAGDVIPQVVGVIESERPDDAREVVFPTHCPVCGSDVERVEGEVVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKGALKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ +++K+K TT +RF+Y+LGI VGE TA LA +F +LE + A +
Sbjct: 486 DRMGPKSAQNVVNSLEKAKTTTLARFLYSLGISEVGEATAANLAAHFGSLEKIMAADLDA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW----------LNNP------- 598
L+ + +G+ F+++ +R +I QL + GI W +++P
Sbjct: 546 LIAVQDVGTVVASHLRNFMDEESNREVIRQLVEEAGINWPAVEVVNAAEIDSPFAGKTVV 605
Query: 599 -----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 LTGSLTILSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVIDEAE 665
Query: 642 FVKIV 646
++++
Sbjct: 666 MIRLL 670
>gi|421784819|ref|ZP_16221255.1| DNA ligase, NAD-dependent [Serratia plymuthica A30]
gi|407753003|gb|EKF63150.1| DNA ligase, NAD-dependent [Serratia plymuthica A30]
Length = 673
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 260/666 (39%), Positives = 395/666 (59%), Gaps = 37/666 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P + D +YD+L+ EL+++E +PEL+T DS TQ VG
Sbjct: 7 QINQLRTSLRHHEYQYHVLDAPEVPDAEYDRLMNELRELENAHPELITADSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN F +E + F KR+ + LK ++ + + ELK DG+AV+L YE
Sbjct: 67 LAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKSSEPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT+N+ I IPL L+ P LEVR EV + + F ++N+
Sbjct: 127 DGELVRAATRGDGTTGENITSNVRTIRAIPLRLSGDNIPRRLEVRGEVFMPQAGFEQMNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
K F NPRNAAAG +RQL+P+I + L FF +GVG L G +P SH + L +
Sbjct: 187 EARRKDGKIFANPRNAAAGSIRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHWQRLMQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + +G ++++ FY+++ R L ++IDGVV KI+ + Q+ LGF +RA
Sbjct: 247 KNWGLPVSDRAKCCTGSDEVLAFYRQVEQDRAQLGFDIDGVVVKIDDIDLQETLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHNADEIDR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV+V R+G+VIPK+ I RP D++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDTVIVRRAGDVIPKVVGVIEDRRPQDAREIVFPLHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+IE+LV V DL++++ L L
Sbjct: 427 TGGLI-CAAQRKEALKHFVSRRAMDVDGMGDKIIEQLVEKEYVKNPADLFRLSAGILTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++KSK TTF+RF+YALGIR VGE TA LA +F L ++ A +
Sbjct: 486 DRMGPKSAQNLVNALEKSKRTTFARFLYALGIREVGEATAANLAAHFGELPKLYAADIDA 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL--RDVGIYW----------LNNP------ 598
L +P +G K F+++ L++ +I +L ++GI W +++P
Sbjct: 546 LKQVPDVGEVVAKHVRHFLDEELNQKVIDELIGAEIGINWPEVVVVAAEEIDSPFAGKTV 605
Query: 599 ------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
G KV +SK T+ ++ G+ G KL KA +L I ++DE
Sbjct: 606 VLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIAVIDEA 665
Query: 641 NFVKIV 646
++++
Sbjct: 666 EMIRLL 671
>gi|24374425|ref|NP_718468.1| DNA ligase NAD-dependent LigA [Shewanella oneidensis MR-1]
gi|81460839|sp|Q8ED70.1|DNLJ_SHEON RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|24348997|gb|AAN55912.1| DNA ligase NAD-dependent LigA [Shewanella oneidensis MR-1]
Length = 689
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 260/662 (39%), Positives = 394/662 (59%), Gaps = 38/662 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L + L+ HNI YY+ D P I+D++YD+L+ +LKK+E +YP+ + DS TQ VG +
Sbjct: 30 LSQSLNEHNIRYYVDDAPSITDSEYDRLMQQLKKLEAEYPQFVLADSPTQRVGGLALAKF 89
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ + H M+SLDN F + D F+KR+++ + + + E K DG+AV++ Y G L
Sbjct: 90 EQITHLKPMLSLDNAFDEADFTAFHKRVSDRVG---QVSFCCEPKLDGLAVSILYRNGVL 146
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
++A+TRGDG +GE+IT N+ I IPL L PEL+EVR E + K F LN+
Sbjct: 147 ERAATRGDGTVGEDITENVKTIKSIPLRLRGNNYPELVEVRGEAFMPKAAFEALNERARL 206
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPSSHSELLNWYQK 258
K+F NPRNAAAG LRQL+ KI ++ L F+A+ +G E + +H E L +
Sbjct: 207 KDDKQFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPSSHELAKTHYEQLQQLKS 266
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL + E V +N++ +YK I +R +LP+EIDGVV K+N ++ Q+ LGF +++PR
Sbjct: 267 WGLPVSSEIKVCDELNQVFAYYKDILTRRSDLPFEIDGVVMKVNDIAQQQTLGFVAKSPR 326
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E +T ++ ++ Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R
Sbjct: 327 WAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIERLG 386
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
+ +GDTV++ R+G+VIP+I + + R D++ P CP+C S + +E +ARCSG
Sbjct: 387 VMVGDTVIIRRAGDVIPQIVAIVPERRSEDAQAIVFPQHCPVCGSLVERLEGEAVARCSG 446
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+K+ + LDR
Sbjct: 447 GLF-CEAQRKEAIKHFASRKALDIDGMGDKIVEQLIDKELVQSPADLFKLTASMMTMLDR 505
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N+ LAI+ +K TT RF+YALGIR VGE TA LA +F +L+ + AT EQL+
Sbjct: 506 MGMKSATNLALAIEAAKTTTLPRFLYALGIREVGEATAANLAAHFGSLDALRIATIEQLI 565
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------ 594
+ IG + F QP + +I L G+ W
Sbjct: 566 EVEDIGEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPAIEAPSADEQPLKGQTWVLTGTL 625
Query: 595 --LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
LN + K G KV +SKNT+ LV G+ G KL KA +L +K++ E + ++
Sbjct: 626 NQLNRNDAKAQLQVLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 685
Query: 647 KG 648
Sbjct: 686 AA 687
>gi|417342777|ref|ZP_12123504.1| DNA ligase [Salmonella enterica subsp. enterica serovar Baildon
str. R6-199]
gi|357956215|gb|EHJ81733.1| DNA ligase [Salmonella enterica subsp. enterica serovar Baildon
str. R6-199]
Length = 648
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 258/647 (39%), Positives = 388/647 (59%), Gaps = 35/647 (5%)
Query: 34 LYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMSLD 93
+ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG + H M+SLD
Sbjct: 1 MMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAPLTAFNQIRHEVPMLSLD 60
Query: 94 NGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGE 153
N F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE G L A+TRGDG GE
Sbjct: 61 NVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYENGVLVSAATRGDGTTGE 120
Query: 154 NITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAA 213
+IT+N+ I IPL L+ P LEVR EV + + F K+N+ G K F NPRNAA
Sbjct: 121 DITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAA 180
Query: 214 AGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVLSGV 273
AG LRQL+P+I + L FF +GVG L G +P +H L ++ GL + ++
Sbjct: 181 AGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQFKAWGLPVSDRVTLCDSP 240
Query: 274 NKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTK 333
+++FY + R L ++IDGVV K+N L+ Q++LGF +RAPR+A+A+KF ++E +T
Sbjct: 241 QAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARAPRWAVAFKFPAQEQMTF 300
Query: 334 IKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNV 393
++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R ++IGD VV+ R+G+V
Sbjct: 301 VRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDV 360
Query: 394 IPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQH 453
IP++ + +LS RP +++ P CP+C S + +E + RC+G I C AQRK L+H
Sbjct: 361 IPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRCTGGLI-CGAQRKESLKH 419
Query: 454 FSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513
F SR+AM++ G+G K+I++LV V T DL+++ L LDR+ K A N++ A++K
Sbjct: 420 FVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGLDRMGPKSAQNVVNALEK 479
Query: 514 SKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIK 573
+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++L +P +G
Sbjct: 480 AKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQTATIDELQKVPDVGIVVATHVFN 539
Query: 574 FINQPLHRLLISQLRDVGIYW----------LNNP------------------NTK---- 601
F + +R +I QL G++W +++P + K
Sbjct: 540 FFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAKARLV 599
Query: 602 --GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
G KV +SK T+ ++ G+ G KL KA +L I ++DE ++++
Sbjct: 600 ALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 646
>gi|395227242|ref|ZP_10405570.1| NAD-dependent DNA ligase LigA [Citrobacter sp. A1]
gi|424731783|ref|ZP_18160365.1| nad-dependent dna ligase [Citrobacter sp. L17]
gi|394719425|gb|EJF25030.1| NAD-dependent DNA ligase LigA [Citrobacter sp. A1]
gi|422893921|gb|EKU33737.1| nad-dependent dna ligase [Citrobacter sp. L17]
Length = 671
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 263/664 (39%), Positives = 400/664 (60%), Gaps = 35/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+LL EL+++E ++P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLLRELRELEAQHPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T + + ELK DG+AV++ YE
Sbjct: 67 LTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDKLTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPTRLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 EARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGVLPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + ++ +++ +Y K+ R L ++IDGVV K+N ++ Q++LGF +RA
Sbjct: 247 KEWGLPVSDRVALCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSMALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP++++ + P CP+CNS + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPDNTREIEFPTHCPVCNSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A+++ G+G K+I++LV V T DL+ + L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFTLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 DRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASVEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------- 598
L +P +G F + +R +I QL + GI+W +++P
Sbjct: 546 LQKVPDVGIVVATHVFNFFAEESNREVIVQLLEQGIHWPAPVVINAEEIDSPFAGKTVVL 605
Query: 599 ----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ ++ G+ G KL KA +L I+++DE
Sbjct: 606 TGSLSLMSRDDAKARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEM 665
Query: 643 VKIV 646
++++
Sbjct: 666 IRLL 669
>gi|343501698|ref|ZP_08739568.1| NAD-dependent DNA ligase LigA [Vibrio tubiashii ATCC 19109]
gi|418477239|ref|ZP_13046372.1| NAD-dependent DNA ligase LigA [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342816994|gb|EGU51883.1| NAD-dependent DNA ligase LigA [Vibrio tubiashii ATCC 19109]
gi|384574979|gb|EIF05433.1| NAD-dependent DNA ligase LigA [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 669
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 266/668 (39%), Positives = 401/668 (60%), Gaps = 34/668 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+++ ++ +L+K LH H + YY+ DNP I D +YD+L+ EL ++E + P+L+T DS +Q
Sbjct: 3 TEIQEKLNQLRKTLHYHGVKYYVEDNPEIPDAEYDRLMRELMELESQNPKLITIDSPSQR 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + V H M+SLDN F D ++ F+KR+ + + K + E K DG+AV
Sbjct: 63 VGGAPLDGFDSVTHEIPMLSLDNAFDDGELESFHKRMGDRIPSAKFDVFCCEPKLDGLAV 122
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L QA+TRGDG GENIT N+ I IPL L + P +EVR EV + K F
Sbjct: 123 SLLYENGVLVQAATRGDGATGENITENVRTIKAIPLKLQGEGWPARIEVRGEVFMPKAGF 182
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN+ G K F NPRNAAAG LRQL+ +I + L F+A+ VG + G+ + SSH +
Sbjct: 183 DKLNEQALKKGEKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVEGVELSSSHYQ 242
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
+ GL +C E ++ ++++ +Y+ I +R +L YEIDGVV K++ ++ Q++LG
Sbjct: 243 RFIQLKGWGLPMCPETKRVNNLDEVKAYYQDILERRESLAYEIDGVVIKVDQITLQEQLG 302
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 303 FVARAPRWAIAYKFPAQEEITTLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNA 362
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI R + +GDTVV+ R+G+VIP+I S + RP ++ P CP+C S++ +E
Sbjct: 363 DEIERLGVMVGDTVVIRRAGDVIPQIVSVVTDRRPESAREIVFPENCPVCKSQVERVEGE 422
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARCSG + C AQRK L+HF SRKA+++ GLG+K+IE+LV+ +V T DL+K++
Sbjct: 423 AVARCSGGLV-CQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDREMVETPADLFKLSAG 481
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ LDR+ K A N++ A+ K+K TT +RF+Y+LGIR VGE TA LA +FK L+ +
Sbjct: 482 VITVLDRMGPKSAQNVVDALNKAKQTTLARFLYSLGIREVGEATAANLAQHFKTLDLVKA 541
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------------- 594
A E+L+ + IG F Q ++ +I +L + G+ W
Sbjct: 542 ANHEKLVEVQDIGDIVASHITAFFTQDKNQSVIDELIEQGVSWPDIEEKDEDAPQPLEGK 601
Query: 595 ----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
L + K G KV +SK T+ L G+ G KL KA +L I+I
Sbjct: 602 TVVLTGSLSQLTRSDAKAALQALGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIRT 661
Query: 639 EKNFVKIV 646
E++ + ++
Sbjct: 662 EEDLISLM 669
>gi|417422119|ref|ZP_12160153.1| DNA ligase [Salmonella enterica subsp. enterica serovar Mississippi
str. A4-633]
gi|353618721|gb|EHC69323.1| DNA ligase [Salmonella enterica subsp. enterica serovar Mississippi
str. A4-633]
Length = 648
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 257/647 (39%), Positives = 386/647 (59%), Gaps = 35/647 (5%)
Query: 34 LYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMSLD 93
+ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG + H M+SLD
Sbjct: 1 MMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAPLTAFNQIRHEVPMLSLD 60
Query: 94 NGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGE 153
N F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE G L A+TRGDG GE
Sbjct: 61 NVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYENGVLVSAATRGDGTTGE 120
Query: 154 NITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAA 213
+IT+N+ I IPL L+ P LEVR EV + + F K+N+ G K F NPRNAA
Sbjct: 121 DITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAA 180
Query: 214 AGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVLSGV 273
AG LRQL+P+I + L FF +GVG L G +P +H L ++ GL + ++
Sbjct: 181 AGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQFKAWGLPVSDRVTLCDSP 240
Query: 274 NKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTK 333
+++FY + R L ++IDGVV K+N L+ Q++LGF +RAPR+A+A+KF ++E +T
Sbjct: 241 QAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARAPRWAVAFKFPAQEQMTF 300
Query: 334 IKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNV 393
++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R ++IGD VV+ R+G+V
Sbjct: 301 VRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDV 360
Query: 394 IPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQH 453
IP++ + +LS RP +++ P CP+C S + +E + RC+G I C AQRK L+H
Sbjct: 361 IPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRCTGGLI-CGAQRKESLKH 419
Query: 454 FSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513
F SR+AM++ G+G K+I++LV V T DL+++ L LDR+ K A N++ A++K
Sbjct: 420 FVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGLDRMGPKSAQNVVNALEK 479
Query: 514 SKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIK 573
+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++L +P +G
Sbjct: 480 AKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQTATIDELQKVPDVGIVVATHVFN 539
Query: 574 FINQPLHRLLISQLRDVGIYW----------LNNP------------------------N 599
F + +R +I QL G++W +++P
Sbjct: 540 FFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAKARLA 599
Query: 600 TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
G KV +SK T+ ++ G+ G KL KA +L I ++DE ++++
Sbjct: 600 ALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 646
>gi|315127017|ref|YP_004069020.1| NAD-dependent DNA ligase [Pseudoalteromonas sp. SM9913]
gi|315015531|gb|ADT68869.1| NAD-dependent DNA ligase [Pseudoalteromonas sp. SM9913]
Length = 673
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 266/668 (39%), Positives = 394/668 (58%), Gaps = 33/668 (4%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S +S ++ L+ L +HN +YY+ D P I D +YD+LL L ++E ++PE LT DS TQ
Sbjct: 3 SSISEQINHLRTTLEQHNYSYYVLDTPSIPDAEYDRLLRTLSELETQHPEFLTADSPTQK 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + V H M+SLDN F +++ FN+RI L T+ + + E K DG+AV
Sbjct: 63 VGGAALAKFEQVAHQVPMLSLDNAFGEDEFSGFNRRIKERLMSTEELTFCCEPKLDGLAV 122
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
++ Y G L QA+TRGDG GENIT N+ I +PL L P LEVR EV + F
Sbjct: 123 SIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDDYPRELEVRGEVFMDSAGF 182
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN G K F NPRNAAAG LRQL+ KI + L F+A+ G + +P H +
Sbjct: 183 EKLNAEAEKRGDKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGTLPEDHYQ 242
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
L GL +C E ++ G + +Y I +R L YEIDGVV K+N + Q++LG
Sbjct: 243 QLAKLTDWGLPLCPETKLVEGPKAALAYYNDILTRRSELKYEIDGVVIKVNKKALQERLG 302
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+AYKF ++E +T++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 303 FVARAPRWAIAYKFPAQEEITQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNA 362
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI R +++GDTV++ R+G+VIP+IT +L RP+D+K P +CPIC+S I +E
Sbjct: 363 DEIARLGVKVGDTVIIRRAGDVIPQITQVVLEQRPSDAKEIVFPTMCPICDSHIERVEGE 422
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC+G + C AQRK ++HF+SRKA++I GLG K++++LV+ ++ T DL+ +
Sbjct: 423 AVARCTGGLV-CQAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPADLFILKQG 481
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L+R+ K A N++ A+ +K TT ++F+Y+LGIR VGE TA+ LAN+F LE +
Sbjct: 482 HFESLERMGPKSAKNLVAALDDAKTTTLAKFLYSLGIREVGEATAQNLANHFLTLENVID 541
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--LNNPNTK-------- 601
A+ EQL+ + +G K F + + ++++L GI W L P+ +
Sbjct: 542 ASIEQLIEVSDVGEIVAKHVRGFFTEEHNLTVVNELIAQGINWPQLTAPSEQEQPLAGLT 601
Query: 602 ----------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
G KV +S T+ LV G+K G KL KA +L I+IL E
Sbjct: 602 YVLTGTLNTLNRNDAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQELGIEILTE 661
Query: 640 KNFVKIVK 647
+ + +++
Sbjct: 662 DDLITLLE 669
>gi|188533249|ref|YP_001907046.1| NAD-dependent DNA ligase LigA [Erwinia tasmaniensis Et1/99]
gi|254781330|sp|B2VE40.1|DNLJ_ERWT9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|188028291|emb|CAO96149.1| DNA ligase [Erwinia tasmaniensis Et1/99]
Length = 670
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 261/671 (38%), Positives = 394/671 (58%), Gaps = 38/671 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
L ++T L+ L + Y++ D P + D +YD+L+ EL+++E +PELLT DS TQ
Sbjct: 1 MESLQDKITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRELEAAHPELLTTDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + V H M+SLDN F +E FNKR+ + LK + ++ + ELK DG+A
Sbjct: 61 RVGAAPLSAFEQVRHEVPMLSLDNAFDEESYRAFNKRVQDRLKSSDDLTFCCELKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G L +A+TRGDG GENIT N+ I IPL L+ PE LEVR EV +
Sbjct: 121 VSLLYEQGELVRAATRGDGTTGENITANVRTIRAIPLRLSGDNIPERLEVRGEVFMPLAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F K+N+ G K F NPRNAAAG LRQL+P+I + L FF +G+G L G MP SH
Sbjct: 181 FEKMNEQARRGGQKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEMPRSHM 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
L ++ GL + + + +++FY ++ R L ++IDGVV K++ L Q++L
Sbjct: 241 ARLQQFKAWGLPVSDRVRLCHSPSDVLDFYHQVEADRPALGFDIDGVVIKVDSLEQQEQL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PVL+ G+ ++ ATLHN
Sbjct: 301 GFVARAPRWAVAFKFPAQEQITTVRDVEFQVGRTGAITPVARLEPVLVAGVMVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R ++IGD VV+ R+G+VIP++ S + S IF P CP+C S + +E
Sbjct: 361 ADEIERLGLRIGDRVVIRRAGDVIPQVMSVVESAEGARDVIF--PTHCPVCGSDVERVEG 418
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
++ARC+G I C AQRK L+HF SR+A++I G+G+K+I++LV+ V +L+++
Sbjct: 419 EVVARCTGGLI-CGAQRKGALKHFVSRRALDIDGMGEKIIDQLVDKEYVKNPAELFELTA 477
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L LDR+ K A N++ A+ K+K TTF+RF+YALGI VGE TA LA +F LE +
Sbjct: 478 GKLTGLDRMGPKSAQNVVDALAKAKQTTFARFLYALGISEVGEATAANLAAHFGTLEALM 537
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRD-VGIYW----------LNNP- 598
A + L+ +P +G F+++ +R +I L + G+ W +++P
Sbjct: 538 AADIDTLITVPDVGKVVASHVRNFLDEESNREIIRLLVEKAGVNWPDVVVVKAEEIDSPF 597
Query: 599 -----------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIK 635
G KV +SK T+ ++ G+ G KL KA +L I
Sbjct: 598 AGKTVVLTGSLSILSRDDAKERLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGID 657
Query: 636 ILDEKNFVKIV 646
++DE+ ++++
Sbjct: 658 VIDEQEMMRLL 668
>gi|423686670|ref|ZP_17661478.1| NAD-dependent DNA ligase LigA [Vibrio fischeri SR5]
gi|371494738|gb|EHN70336.1| NAD-dependent DNA ligase LigA [Vibrio fischeri SR5]
Length = 668
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 398/664 (59%), Gaps = 42/664 (6%)
Query: 20 ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGEN 79
ELK++L+ H YY+ D+P + D +YD+++ +L IE ++PEL+T DS +Q VG +
Sbjct: 9 ELKQQLNYHAYRYYVEDSPELPDAEYDRMMQQLLSIESEHPELVTVDSPSQRVGGEALDG 68
Query: 80 SKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIE-YIAELKFDGIAVNLRYEYG 138
+ H M+SLDN FSDE++ F KR+ + L ++K + + E K DG+AV+L Y G
Sbjct: 69 FTQIQHEISMLSLDNAFSDEELEAFEKRMNDRL-ISKPVSLFCCEPKLDGLAVSLLYVDG 127
Query: 139 YLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYR 198
L QA TRGDG GENIT N+ I IPL+L + P LEVR EV + K F LN+
Sbjct: 128 KLVQAGTRGDGTTGENITENVRTIRCIPLILQGEGWPTRLEVRGEVFMPKAGFEALNERA 187
Query: 199 YHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQK 258
G K F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH + +
Sbjct: 188 LKRGEKPFANPRNAAAGSLRQLDSKITATRPLSFYAYSVGVIEGGELETSHYQRFVQLKS 247
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL +C E ++++ +YK I +R L YEIDGVV K++ ++ Q++LGF +RAPR
Sbjct: 248 WGLPMCEETKQCHSLSEVKAYYKDILERRDALKYEIDGVVIKVDDIALQEQLGFVARAPR 307
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 308 WAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIARLG 367
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
+ IGDTV++ R+G+VIP+I S + + RP DSK P CP+C S + +E + RC G
Sbjct: 368 VHIGDTVIIRRAGDVIPQIVSVVEARRPTDSKAIVYPTHCPVCGSNLERVEGEAVTRC-G 426
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
+ + C AQRK L+HF SRKA+++ GLG K++E+LV+ +V T DL+K++ L L+R
Sbjct: 427 AGLVCQAQRKEALKHFVSRKALDVDGLGDKVVEQLVDKEMVETPADLFKLSAGVLTVLER 486
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N++ A+ K+K TT RF+Y+LGIR VGE TA LA +F LE + AT EQL+
Sbjct: 487 MGPKSAQNVVDALNKAKATTLPRFLYSLGIREVGEATAANLAAHFYTLEAIQVATFEQLI 546
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------------- 601
+ +G K + F +P ++ +I L+++GI+W P K
Sbjct: 547 EVSDVGDIVAKHVLNFFAEPHNKTVIEDLQEMGIHW---PEIKALDESVPQPLAGKVVVL 603
Query: 602 -------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ L G+ G KL KA +L +++++E+
Sbjct: 604 TGTLHKLKRNEAKAALQELGAKVTGSVSKKTDILFAGEAAGSKLAKAEELGVEVMNEEQL 663
Query: 643 VKIV 646
++++
Sbjct: 664 IELL 667
>gi|384081933|ref|ZP_09993108.1| NAD-dependent DNA ligase [gamma proteobacterium HIMB30]
Length = 687
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 269/679 (39%), Positives = 402/679 (59%), Gaps = 40/679 (5%)
Query: 5 AKKKINF--SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPEL 62
+ K I F ++ R+ EL E+ +H+ Y++ D P I D++YDQL+ ELK++E ++P+L
Sbjct: 11 SSKPIAFMIDSIAHRIRELITEIRQHDYNYHVLDAPTIGDSQYDQLMRELKQLELEHPDL 70
Query: 63 LTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIA 122
+ +S TQ VG + V H M+SLDN F ++ F +RI + L T + A
Sbjct: 71 VDPNSPTQRVGAKPDSGFEEVTHRVPMLSLDNLFDLDEFRQFVERIKDRLSQTDTPQMTA 130
Query: 123 ELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRC 182
E K DG+A+++RYE G+L A+TRGDG GEN+T N+ I IPL L + PE+LEVR
Sbjct: 131 EPKLDGLALSIRYEQGHLVLATTRGDGQTGENVTQNVRTIRSIPLTLKGSHYPEVLEVRG 190
Query: 183 EVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG 242
EV++ K DF +N+ K F NPRNAAAG LRQL+P I + L F+A+G+GE+
Sbjct: 191 EVIMKKADFAAMNQRLSEASEKVFVNPRNAAAGSLRQLDPSIVSTRPLSFYAYGLGEV-S 249
Query: 243 MNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIE-FYKKINIKRFNLPYEIDGVVYKI 301
+ +H+E+++ +++G+ + +++G + IE Y + +R LPYEIDG+V K+
Sbjct: 250 EPLGDTHTEVMDALKQLGIPV--NPGLVTGEAEAIETAYHSLIAERDALPYEIDGMVVKV 307
Query: 302 NCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGI 361
+ ++ Q LGF +RAPRFA A+KF ++EA T++ AI++Q+GRTG ITPVA L+P+ + G+
Sbjct: 308 DSIALQNALGFVARAPRFASAWKFPAQEASTRLLAIDLQVGRTGAITPVARLEPIFVGGV 367
Query: 362 TITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPIC 421
T++ ATLHN E+ R +++ GD V+V R+G+VIP+I I RP+ +K IP CP+C
Sbjct: 368 TVSNATLHNFDEVSRLDVRPGDQVMVRRAGDVIPQIIKVIAEERPDIAKPIAIPTACPVC 427
Query: 422 NSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVT 481
S + + + RCSG I C AQR L+HF SRKAM+I G+G++++E L+ V+T
Sbjct: 428 QSPVERADGEAVIRCSGGLI-CQAQRLEHLKHFVSRKAMDIDGVGERLLEILIEKEWVIT 486
Query: 482 AVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELAN 541
DLY++ +L LDR+ K A N++ AI SK TTF+RF+YALGIR VGE TA+ LA
Sbjct: 487 PADLYRLTADSLEGLDRMGVKSAQNVIDAITTSKQTTFARFLYALGIRDVGEATARTLAA 546
Query: 542 YFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------- 594
F +L+ + +A+ E L+ + +G F HR +I +L D+GI W
Sbjct: 547 TFGSLDRLIQASHEDLMEVDDVGPVVASHIRSFFEIDRHRSVIQELIDLGIQWPDGAVSA 606
Query: 595 -LNNPNTK-------------------------GGKVVNFISKNTNYLVKGQKPGKKLEK 628
N P+ G KV +S TN LV G G KL K
Sbjct: 607 LQNGPDLSGQTWVLTGTLESMTRDEASEQLRALGAKVSGSVSAKTNVLVAGPGAGSKLTK 666
Query: 629 AIKLNIKILDEKNFVKIVK 647
A L + I+DE + ++
Sbjct: 667 AESLGVDIIDEAALIALLS 685
>gi|242238286|ref|YP_002986467.1| NAD-dependent DNA ligase LigA [Dickeya dadantii Ech703]
gi|242130343|gb|ACS84645.1| DNA ligase, NAD-dependent [Dickeya dadantii Ech703]
Length = 684
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 267/676 (39%), Positives = 400/676 (59%), Gaps = 43/676 (6%)
Query: 10 NFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLT 69
+ S + ++ L+ +L H Y++ D P I D +YD+L+ LK +E+ +PE +T DS T
Sbjct: 11 DTSAAAVQIDALRAQLRYHEYKYHVEDAPEIPDAEYDKLMNALKLLEQAHPEWVTSDSPT 70
Query: 70 QHVG---LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKF 126
Q VG L G +N V H M+SLDN F E F KRI + LK + + + ELK
Sbjct: 71 QRVGATPLAGFDN---VQHEVPMLSLDNVFDAESFQAFVKRIGDRLKSDEALRFCCELKL 127
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+AV+L YE G L +A+TRGDG+ GENIT+NI I IPL L P LEVR EV +
Sbjct: 128 DGLAVSLLYEDGVLVRAATRGDGSTGENITSNIRTIGAIPLRLRGDNIPRRLEVRGEVFM 187
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
K F LN+ G K F NPRNAAAG LRQL+P+I + L FF +GVG + G ++P
Sbjct: 188 KHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLMEGGSLP 247
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
SH + L +++ GL + + +G ++++ FY+ + R L ++IDGVV K++ L+
Sbjct: 248 DSHWQRLMQFREWGLPVSDRIRLCTGGDEVLAFYQHVEAVRDTLGFDIDGVVIKVDDLAL 307
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q++LGF +RAPR+A+A+KF ++E LT ++ + Q+GRTG ITPVA L+PV + G+ ++ A
Sbjct: 308 QERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVARLEPVAVAGVIVSNA 367
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKII 426
TLHN EI R IQIGD V V R+G+VIP+I S +L RP D++ P CP+C S +
Sbjct: 368 TLHNADEIDRLGIQIGDRVAVRRAGDVIPQIVSVVLPDRPADARPVVFPTQCPVCGSDVE 427
Query: 427 YIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY 486
++ ++ RC+G C AQRK L+HF SR+A+++ G+G K+I++LV V T +L+
Sbjct: 428 RVDGEVVTRCTGGLF-CAAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVKTPAELF 486
Query: 487 KINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546
+++ L RL+R+ K A N++ A+ K+K TTF+RF+YALGIR VGE TA LA +F L
Sbjct: 487 RLDIGILTRLERMGPKSAQNLVNALDKAKSTTFARFLYALGIRDVGEATAAGLAAHFGTL 546
Query: 547 ECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQL--RDVGIYW---------- 594
+ + A + L +P +G F+++ ++ +I +L +VG+ W
Sbjct: 547 DALMTADVDTLQQVPDVGIVVATHVRHFLDEEHNQQIIRELIGPEVGLRWPDPVVVDAGA 606
Query: 595 LNNP------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAI 630
L+NP G KV +SK T+ ++ G+ G KL KA
Sbjct: 607 LDNPFAGKTVVLTGSLSLLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQ 666
Query: 631 KLNIKILDEKNFVKIV 646
L I ++DE ++++
Sbjct: 667 ALGIDVIDEVEMMRLL 682
>gi|171059186|ref|YP_001791535.1| NAD-dependent DNA ligase [Leptothrix cholodnii SP-6]
gi|254781357|sp|B1Y6D4.1|DNLJ_LEPCP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|170776631|gb|ACB34770.1| DNA ligase, NAD-dependent [Leptothrix cholodnii SP-6]
Length = 768
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 277/720 (38%), Positives = 411/720 (57%), Gaps = 86/720 (11%)
Query: 10 NFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLT 69
+ + R L+ L H YY+ D P + D +YD+L EL+ IE YP L T DS T
Sbjct: 30 DLQTAAARAAWLRSTLQHHAHLYYVLDAPELPDAEYDRLFQELQAIEAMYPALRTADSPT 89
Query: 70 QHVGLVGGENSKYV--HHTFKMMSLDNGFSDE--DVIIFNKRITNELKLTKN---IEYIA 122
Q V +G +V H M+S+ E + F+ R+ EL+L + I Y
Sbjct: 90 QRV--LGQVRDGFVVVRHAVPMLSIRTETDTEASGAVAFDARVRRELELPDDAPPISYAT 147
Query: 123 ELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI---------KY 173
ELKFDG+A+NLRYE+G L QA+TRGDG GE++T NI I +IPL L
Sbjct: 148 ELKFDGLAINLRYEHGVLVQAATRGDGESGEDVTQNIRTIGQIPLRLRWAPTLGADAHSL 207
Query: 174 PPE---------------------LLEVRCEVLIYKKDFIKLNK------YRYHLGLKKF 206
PPE +LEVR EV + + DF LN+ R G K F
Sbjct: 208 PPEGARFALGRPGGETGAPDLAPAVLEVRGEVYMRRDDFEALNERQRERIARGDKGEKTF 267
Query: 207 TNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGE 266
NPRNAAAG +RQL+P I + L FFA+G+GE++G +P +H+ LL+ GL +C E
Sbjct: 268 VNPRNAAAGAVRQLDPAIAAQRPLSFFAYGLGEVQGWALPHTHAGLLDALAAAGLPVCAE 327
Query: 267 YSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFL 326
+V+ G + L+ F+++I R +L ++IDGVVYK++ L+ Q++LGF +R PR+A+A+K+
Sbjct: 328 RAVVQGADGLVAFHQRIGALRDSLAFDIDGVVYKVDSLALQQRLGFVTREPRWAVAHKYP 387
Query: 327 SKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVV 386
++E +T++ I IQ+GRTG +TPVA L+PV + G T++ ATLHNE E RK++++GDTV+
Sbjct: 388 AQEQMTRLLGIEIQVGRTGKLTPVARLEPVFVGGTTVSNATLHNEDEARRKDVRVGDTVI 447
Query: 387 VHRSGNVIPKITSSILSLRPND-SKIF----KIPNICPICNSKIIYIESNLIARCSGSWI 441
V R+G+VIP++ +L RP+D + F ++ CP+C S I E RC+G
Sbjct: 448 VRRAGDVIPQVVGVVLEQRPDDVGEPFDLYQRLGGRCPVCGSAIARPEGEADWRCTGGLF 507
Query: 442 ECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSN 501
C AQRK + HF+SR+ M+I GLG K++++LV+A ++ T +LYK+ L L+R+
Sbjct: 508 -CAAQRKQAILHFASRRMMDIEGLGDKLVDQLVDAGVIRTLPELYKLGVAKLTALERMGE 566
Query: 502 KLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIP 561
K A N++ A++KSK TT +RF+++LGIR VGE TAK LA +F L+ + A+ +QL +P
Sbjct: 567 KSAVNLVAALEKSKQTTLARFLFSLGIRQVGEATAKALARHFGALDRVMDASVDQLQAVP 626
Query: 562 KIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------------------- 594
+G + F +QP +R ++ QLR GI+W
Sbjct: 627 DVGPIVALSIRTFFDQPHNREVVEQLRAAGIHWAEHEASAAADAAELPLAGKTLVLTGTL 686
Query: 595 --LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
L K GGKV +SK T+++V G + G KL+KA +L + ILDE + ++
Sbjct: 687 PTLGRDAAKDLIEAAGGKVSGSVSKKTHFVVAGAEAGSKLDKARELGLVILDEAGLLALL 746
>gi|399116529|emb|CCG19336.1| DNA ligase [Taylorella asinigenitalis 14/45]
Length = 682
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 276/674 (40%), Positives = 410/674 (60%), Gaps = 52/674 (7%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
LK ++ H+ AYY+ DNP ISD +YD L+ L + E +PE +T DS +Q VG GE
Sbjct: 12 LKTQIAEHDRAYYIEDNPKISDAEYDGLMRRLLEYESLHPEWVTPDSPSQRVG---GEAL 68
Query: 81 K---YVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
K V HT M+SL N F+ E++ F R+ E T++IE+ E KFDG+A+ LRYE
Sbjct: 69 KIFNSVRHTVPMLSLGNVFNTEELTAFYNRMV-EACGTRDIEFNCEPKFDGLAITLRYEQ 127
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYP---PELLEVRCEVLIYKKDFIKL 194
G LK A+TRGDG GE++T + I +P+ LN PE++EVR E L++K+DF KL
Sbjct: 128 GLLKYAATRGDGQTGEDVTAQVKTIRTVPIKLNRPNEGTLPEVIEVRGEALMFKRDFEKL 187
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPS---SHSE 251
K++ G++ F NPRNAAAG LRQL+PK+ + L F+A+G+GE + N + SE
Sbjct: 188 VKFQQEQGVQTFANPRNAAAGSLRQLDPKVTSKRNLRFYAYGLGEFKSSNSKGIFKNQSE 247
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
LL+++ +G ++ V+ G+ L+ F++ + KR LP++IDGVVYK+N S QKK+G
Sbjct: 248 LLDYFLSLGFNVTEHREVVYGMEGLLGFFETMKEKREALPFDIDGVVYKVNDFSLQKKIG 307
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
+ S+APRFA+A+KF +++ TK+ I +Q+GRTG +TPVA L+PV + G+T+ +ATLHNE
Sbjct: 308 YISKAPRFAIAHKFAAEQMQTKLLDIEVQVGRTGALTPVAKLEPVFVGGVTVQKATLHNE 367
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI RKN+ IGDTV+V R+G+VIP++ S+ LRP D++ F +P CP+C S + E
Sbjct: 368 DEIARKNLMIGDTVIVRRAGDVIPEVMESLPELRPADARKFIMPTSCPVCGSAVEKPEGE 427
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC+G C AQ + H SRKA+NI GLG K I+KLV++ + DLY+++
Sbjct: 428 AVARCTGGLF-CAAQVTQSIIHAVSRKALNIDGLGDKHIQKLVSSGKINHLDDLYRLSVS 486
Query: 492 NLLRLDRVSNK-----LANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546
+L L R + + LA + IQ SK TT SRF++ALGIRHVGETTA++LA +F +L
Sbjct: 487 DLNVLGRNAEESKLEVLAPTLHARIQSSKSTTLSRFLFALGIRHVGETTARDLAKHFGDL 546
Query: 547 ECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI-------------- 592
+ + A +L +P +G + F +P +R +I L +G
Sbjct: 547 QSIMTADTSKLSQVPNVGEVMADSIHNFFKEPHNREVIENLLTLGFELKAEEENISINPA 606
Query: 593 -------------YWLNNPNTK-----GGKVVNFISKNTNYLVKGQKPG-KKLEKAIKLN 633
W + ++ GG++ + +SK T+YL+ G +PG KL+KA +L
Sbjct: 607 IAGHSFVVTGTLESWKRDEISQVIISAGGRISSSVSKKTDYLLIGSEPGDSKLKKAQELG 666
Query: 634 IKILDEKNFVKIVK 647
+IL E F +++
Sbjct: 667 TEILTESEFKALLQ 680
>gi|408536055|pdb|4GLX|A Chain A, Dna Ligase A In Complex With Inhibitor
Length = 586
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 250/578 (43%), Positives = 368/578 (63%), Gaps = 1/578 (0%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW 594
L +P +G F + +R +IS+L G++W
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHW 583
>gi|296132371|ref|YP_003639618.1| NAD-dependent DNA ligase [Thermincola potens JR]
gi|296030949|gb|ADG81717.1| DNA ligase, NAD-dependent [Thermincola potens JR]
Length = 665
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 261/662 (39%), Positives = 402/662 (60%), Gaps = 36/662 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL+K++ HN YY+ D P I+D +YD+L+ EL ++E++YP+L+T DS TQ VG
Sbjct: 9 RINELRKQIEEHNYYYYVLDRPRITDAEYDRLMRELTELEQQYPDLVTPDSPTQRVGGAP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SL N FS D++ F+KR+ N L + +EY+ ELK DG+AV+L YE
Sbjct: 69 AQGFQSVRHLAPMLSLSNAFSAADLLDFDKRVRNGLAGAR-VEYVVELKIDGLAVSLLYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G + +TRGDG +GE+IT N+ I IPL L ELLEVR E + KK+F ++N+
Sbjct: 128 NGRFVRGATRGDGEVGEDITQNLKTIKSIPLRLRQDL--ELLEVRGEAYMPKKEFARVNE 185
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G F NPRNAAAG LRQL+P + + L F + +G ++G +H E L+
Sbjct: 186 AREEAGEPLFANPRNAAAGSLRQLDPAVTAERSLDIFLYALGAVQGQAPVKTHLEGLHLL 245
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ +G I +L +N++I++ + KR +LPYEIDG+V K+N L+ Q LGFTS++
Sbjct: 246 KDLGFRINPNIVLLPNINEVIDYCQNWTEKRHDLPYEIDGMVIKVNSLAQQAALGFTSKS 305
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF +++A+TK+K I +++GRTG++TP A L+PV + G TI+ ATLHNE I
Sbjct: 306 PRWAIAYKFPAEQAVTKVKRIYVRVGRTGVLTPTAELEPVRVAGSTISSATLHNEDIIRE 365
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGDTV++H++G+VIP+I + R + F +P CP+C+ + + RC
Sbjct: 366 KDIRIGDTVIIHKAGDVIPEIIEVVKEKRTGQEQEFFMPAECPVCHGPVRKPAGEVAVRC 425
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+C + + GL HF SR AM+I GLG +I++L+ A +V A DLY +N ++L++L
Sbjct: 426 VNK--DCPGRGREGLIHFVSRDAMDIEGLGPAVIDQLLTAGLVKDAADLYYLNAEDLIKL 483
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K N+L AI++SK + I+ALGIRHVG K LA +F +++ + +A +E+
Sbjct: 484 ERMGKKSVENLLNAIERSKQKDLASLIFALGIRHVGARAGKILAAHFGSMDRLKEARQEE 543
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------- 601
L IP+IG ++ + + P H LI +LR G+ + +
Sbjct: 544 LTAIPEIGPKMAESIVAYFRDPAHLRLIERLRGAGVKMTQDIPERGERPLEGKTFVLTGA 603
Query: 602 ----------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
GGKV + +SK T+Y++ G PG KLEKA +L I ++ E +F ++
Sbjct: 604 LEKYSRKEAQELIEKLGGKVSSSVSKKTDYVLAGADPGSKLEKARQLGITVISEDDFERM 663
Query: 646 VK 647
+K
Sbjct: 664 IK 665
>gi|348029471|ref|YP_004872157.1| NAD-dependent DNA ligase [Glaciecola nitratireducens FR1064]
gi|347946814|gb|AEP30164.1| DNA ligase, NAD-dependent [Glaciecola nitratireducens FR1064]
Length = 675
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 267/669 (39%), Positives = 409/669 (61%), Gaps = 39/669 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+K+ + LK +L HN YY+ D P I D +YD+L+ EL +E++ P L++ DS +Q
Sbjct: 4 LNKVKAHIDALKSQLEEHNYQYYVMDAPSIPDAEYDRLMRELITLEKQNPALISADSPSQ 63
Query: 71 HVGLVGGENSKY--VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDG 128
VG G SK+ V H M+SLDNGF D+ F KR+ + L +I++ E K DG
Sbjct: 64 KVG--GTPLSKFDTVVHEVPMLSLDNGFEASDLTAFEKRLQDRLLSFSDIQFSCEPKLDG 121
Query: 129 IAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYK 188
+A ++ YE G L +A+TRGDG +GE+IT N+ I +P+ L + P +EVR EV + K
Sbjct: 122 LAASILYENGILTRAATRGDGQVGEDITKNVKTIANVPIKLRGENIPSKVEVRGEVFMPK 181
Query: 189 KDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSS 248
F KLN+ + G K F NPRNAAAG LRQL+ +I + L F+A+ +G + G ++
Sbjct: 182 AGFEKLNETQKKAGNKLFANPRNAAAGSLRQLDSRITAKRPLLFYAYSMGVIEGESLTDL 241
Query: 249 --HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
H+E L K G+ +C E ++ +G + I ++ KI R +LPY+IDGVV+K+N ++
Sbjct: 242 PLHTERLAALGKWGIPLCKESAIANGAEECIAYFTKIGQMRNSLPYDIDGVVFKVNDINL 301
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q++LGF S+APR+A+A KF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ A
Sbjct: 302 QQRLGFVSKAPRWAIAQKFPAQEELTTLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNA 361
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKII 426
TLHN+ EI R ++IGD VV+ R+G+VIP++ S +L R +D + P CP+C+S I
Sbjct: 362 TLHNQDEIARLGVKIGDKVVIRRAGDVIPQVVSVVLEKRTDDVRDIVFPTHCPVCHSHIE 421
Query: 427 YIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY 486
ES +ARC+G + C AQRK ++HF+SRKA++I GLG K++E+LV+AN++ DL+
Sbjct: 422 RTESEAVARCTGGLV-CAAQRKESIKHFASRKALDIDGLGDKIVEQLVDANMIKNPADLF 480
Query: 487 KINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546
++N LL ++R+ +K A N+L AI+KSK TT +F+Y+LGIR VGE+TA+ LA ++ L
Sbjct: 481 RLNMPKLLSVERMGDKSAVNLLNAIEKSKQTTLPKFLYSLGIREVGESTARNLALHYLTL 540
Query: 547 ECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------ 594
E + +A E L+ + +G+ + F+ +P + +I+ L ++GI+W
Sbjct: 541 ERIMQADIESLVEVQDVGAIVAQHVFHFMREPHNVDIINDLFELGIHWPEIQPASLDEQP 600
Query: 595 --------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNI 634
+ K G KV +S T+ L+ G+K G KL KA LNI
Sbjct: 601 FAGKTIVLTGTLSQMGRSEAKAKLQELGAKVSGSVSAKTDLLIAGEKAGSKLSKAESLNI 660
Query: 635 KILDEKNFV 643
++ +E V
Sbjct: 661 EVWNEAQMV 669
>gi|197336238|ref|YP_002156719.1| NAD-dependent DNA ligase LigA [Vibrio fischeri MJ11]
gi|254781450|sp|B5FGU7.1|DNLJ_VIBFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|197317728|gb|ACH67175.1| DNA ligase, NAD-dependent [Vibrio fischeri MJ11]
Length = 668
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 269/664 (40%), Positives = 396/664 (59%), Gaps = 42/664 (6%)
Query: 20 ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGEN 79
ELK++L+ H YY+ D+P + D +YD+++ EL IE ++PEL+T DS +Q VG +
Sbjct: 9 ELKQQLNYHAYRYYVEDSPELPDAEYDRMMQELLSIESEHPELVTVDSPSQRVGGEALDG 68
Query: 80 SKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIE-YIAELKFDGIAVNLRYEYG 138
+ H M+SLDN FSDE++ F KR+ + L ++K + + E K DG+AV+L Y G
Sbjct: 69 FTQIQHEIPMLSLDNAFSDEELEAFEKRMNDRL-ISKPVSLFCCEPKLDGLAVSLLYVNG 127
Query: 139 YLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYR 198
L QA TRGDG GENIT N+ I IPL L + P LEVR EV + K F LN+
Sbjct: 128 KLVQAGTRGDGTTGENITENVRTIRCIPLTLQGEGWPTRLEVRGEVFMPKAGFEALNERA 187
Query: 199 YHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQK 258
G K F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH + +
Sbjct: 188 LKRGEKPFANPRNAAAGSLRQLDSKITATRPLSFYAYSVGVIEGGELETSHYQRFVQLKS 247
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL +C E + ++ +YK I +R L YEIDGVV K++ ++ Q++LGF +RAPR
Sbjct: 248 WGLPMCEETKQCYSLTEVKAYYKDILKRRDALKYEIDGVVIKVDDIALQEQLGFVARAPR 307
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 308 WAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIARLG 367
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
+ IGDTV++ R+G+VIP+I S + + RP DSK P CP+C S + +E + RC G
Sbjct: 368 VHIGDTVIIRRAGDVIPQIVSVVEARRPTDSKAIVYPTHCPVCGSNLERVEGEAVTRC-G 426
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
+ + C AQRK L+HF SRKA+++ GLG K++E+LV+ +V T DL+K++ L L+R
Sbjct: 427 AGLVCQAQRKEALKHFVSRKALDVDGLGDKVVEQLVDKEMVETPADLFKLSAGVLTVLER 486
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N++ A+ K+K TT RF+Y+LGIR VGE TA LA +F LE + AT EQL+
Sbjct: 487 MGPKSAQNVVDALNKAKATTLPRFLYSLGIREVGEATAANLAAHFYTLEAIQVATFEQLI 546
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------------- 601
+ +G K + F +P ++ +I L+++GI+W P K
Sbjct: 547 EVSDVGDIVAKHVLNFFAEPHNKTVIDDLQEMGIHW---PEIKALDESVPQPLAGKVVVL 603
Query: 602 -------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ L G+ G KL KA +L +++++E+
Sbjct: 604 TGTLHKLKRNEAKAALQELGAKVTGSVSKKTDILFAGEAAGSKLAKAEELGVEVMNEEQL 663
Query: 643 VKIV 646
++++
Sbjct: 664 IELL 667
>gi|317491275|ref|ZP_07949711.1| DNA ligase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920822|gb|EFV42145.1| DNA ligase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 678
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 258/661 (39%), Positives = 391/661 (59%), Gaps = 37/661 (5%)
Query: 22 KKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSK 81
+ L H Y++ D P I D +YD+L+ EL+ +EE++PEL+T DS TQ VG
Sbjct: 17 RTALRHHEYQYHVLDAPEIPDAEYDRLMRELRALEEQHPELITPDSPTQRVGAAPLSAFS 76
Query: 82 YVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLK 141
V H M+SLDN F DE + F+KR+ + LK + + + ELK DG+AV+L YE G L
Sbjct: 77 QVRHEVPMLSLDNVFDDESYLAFDKRVHDRLKTAEPLTFCCELKLDGLAVSLLYEDGVLV 136
Query: 142 QASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHL 201
+ +TRGDG GE+IT N+ I IPL L P +EVR EV + F +N+
Sbjct: 137 RGATRGDGTTGEDITANVKTIRAIPLRLQGDNIPRRVEVRGEVFMPLAGFEAMNEEARRK 196
Query: 202 GLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGL 261
K F NPRNAAAG LRQL+P+I + L FF +GVG + G +P+SH L ++ GL
Sbjct: 197 DGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLMDGGELPASHYARLQQFKAWGL 256
Query: 262 SICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFAL 321
+ +G +++++FY+++ +R L ++IDGVV K++ + Q++LGF +RAPR+A
Sbjct: 257 PVSDRVKRCTGSDEVLKFYRQVEQERPTLGFDIDGVVIKVDSIEIQEQLGFVARAPRWAT 316
Query: 322 AYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQI 381
A+KF ++E +T + + Q+GRTG ITPVA L+PVL+ G+ ++ ATLHN EI R ++I
Sbjct: 317 AFKFPAQEQMTVVNGVEFQVGRTGAITPVARLEPVLVAGVIVSNATLHNADEIDRLGLRI 376
Query: 382 GDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWI 441
GDTV+V R+G+VIP++ + + RP +++ P CP+C S + +E +ARC+G I
Sbjct: 377 GDTVIVRRAGDVIPQVVGVVEAQRPENAQEIVFPQHCPVCGSDVERVEGEAVARCTGGLI 436
Query: 442 ECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSN 501
C AQRK L+HF SR+AM++ G+G K+IE+LV V T DLY++ L LDR+
Sbjct: 437 -CGAQRKESLKHFVSRRAMDVDGMGDKIIEQLVEKEYVKTPADLYRLTAGILTGLDRMGP 495
Query: 502 KLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIP 561
K A N++ A+ KSK TT +RF+YALGIR VGE TA LA +F +LE + +A E L ++
Sbjct: 496 KSATNLVNALAKSKETTLARFLYALGIREVGEATAANLAAHFGSLEALREADVEALKSVQ 555
Query: 562 KIGSTTVKAFIKFINQPLHRLLISQL--RDVGIYW----------LNNP----------- 598
+G K F+ + ++ +I +L ++GI+W +++P
Sbjct: 556 DVGEVVAKHVRHFLGEEHNQKVIDELISDEIGIHWPAPQVIVAEEIDSPFAGKTVVLTGS 615
Query: 599 -------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
G KV +SK T+ ++ G+ G KL KA +L I ++DE +++
Sbjct: 616 LSLMPRDEAKDRLAALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRL 675
Query: 646 V 646
+
Sbjct: 676 L 676
>gi|325267489|ref|ZP_08134142.1| NAD-dependent DNA ligase LigA [Kingella denitrificans ATCC 33394]
gi|324981014|gb|EGC16673.1| NAD-dependent DNA ligase LigA [Kingella denitrificans ATCC 33394]
Length = 804
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 259/611 (42%), Positives = 376/611 (61%), Gaps = 29/611 (4%)
Query: 4 HAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELL 63
H + S R+ L + L+R+ YY D P + D +YD+L EL+ +E +YP+
Sbjct: 18 HFQAACTMSTPQHRIRTLVQTLNRYAHEYYTLDAPSVPDAEYDRLYRELETLEAEYPQFR 77
Query: 64 TKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDED----------VIIFNKRITNELK 113
+S TQ VG + + V H M+SL+N FS D + F++R+ EL
Sbjct: 78 LPESPTQRVGGAVLDGFETVVHAVPMLSLNNAFSPRDDETGAFGHAEFLAFDERVCKELG 137
Query: 114 LTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKY 173
+ + +EY AE KFDG+AV+L Y+ G L QA+TRGDG GEN+T NI + IPL L+ +
Sbjct: 138 VAQ-VEYAAEPKFDGLAVSLLYQNGILVQAATRGDGTTGENVTENIKTVRNIPLKLHGEK 196
Query: 174 PPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFF 233
P LLEVR EVL+ K DF LN+ + G K F NPRNAAAG LRQL+ KI + LHFF
Sbjct: 197 QPALLEVRGEVLMLKADFAALNQRQLEAGQKPFANPRNAAAGSLRQLDSKITAQRKLHFF 256
Query: 234 AHGVGELRGMN-MPSSHSELLNWYQKIGLSIC-GEYSVLSGVNKLIEFYKKINIKRFNLP 291
A+G+ +L G+ +P SH E L ++G S+ G + +G ++ Y+++ R LP
Sbjct: 257 AYGIAQLSGVERLPESHMEELALLHELGFSLPEGYFGTHTGAAAVLREYERLAEHRPRLP 316
Query: 292 YEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVA 351
YEIDG+V K+N L+ Q++LGF SRAPR+A+A+KF ++EALT ++AI++Q+GRTG ITPVA
Sbjct: 317 YEIDGMVVKVNSLAEQQQLGFVSRAPRWAIAHKFPAEEALTTVEAIDVQVGRTGAITPVA 376
Query: 352 LLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDS-- 409
L PV + G+T+T ATLHN+ E+ RK++++GDTVVV R+G+VIP++ +L RP
Sbjct: 377 RLAPVFVGGVTVTNATLHNQDEVARKDVRVGDTVVVRRAGDVIPEVVRVLLERRPMQPVD 436
Query: 410 ----------KIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKA 459
+ F++P CP+C S + +ARC+G + C AQR GL HF+SRKA
Sbjct: 437 LLGEQMEAKYEPFRLPETCPVCGSAVEREAGEAVARCTGGML-CQAQRAQGLIHFASRKA 495
Query: 460 MNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL---DRVSNKLANNILLAIQKSKL 516
M+I GLG K IE LV A+++ + D+Y+++ L + + K A NIL +I +S+
Sbjct: 496 MDIAGLGDKQIEALVAADVLHSFADIYRLDIAQLQTIKDSKSAATKWAQNILDSIAQSRT 555
Query: 517 TTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576
+RF++ALGIRHVGE+TAK+LA F NL+ + +A E L +P IGS A +
Sbjct: 556 PPLARFLFALGIRHVGESTAKQLAAAFGNLDTVRRAPEPILACLPDIGSIVAHAIAHYFK 615
Query: 577 QPLHRLLISQL 587
QP + ++ L
Sbjct: 616 QPAQQKMLDDL 626
>gi|417327792|ref|ZP_12113115.1| DNA ligase [Salmonella enterica subsp. enterica serovar Adelaide
str. A4-669]
gi|353569651|gb|EHC34153.1| DNA ligase [Salmonella enterica subsp. enterica serovar Adelaide
str. A4-669]
Length = 648
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 258/647 (39%), Positives = 388/647 (59%), Gaps = 35/647 (5%)
Query: 34 LYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMSLD 93
+ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG + H M+SLD
Sbjct: 1 MMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAPLTAFNQIRHEVPMLSLD 60
Query: 94 NGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGE 153
N F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE G L A+TRGDG GE
Sbjct: 61 NVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYENGVLVSAATRGDGTTGE 120
Query: 154 NITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAA 213
+IT+N+ I IPL L+ P LEVR EV + + F K+N+ G K F NPRNAA
Sbjct: 121 DITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAA 180
Query: 214 AGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVLSGV 273
AG LRQL+P+I + L FF +GVG L G +P +H L ++ GL + ++
Sbjct: 181 AGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQFKAWGLPVSDRVTLCDSP 240
Query: 274 NKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTK 333
+++FY + R L ++IDGVV K+N L+ Q++LGF +RAPR+A+A+KF ++E +T
Sbjct: 241 QAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARAPRWAVAFKFPAQEQMTF 300
Query: 334 IKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNV 393
++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R ++IGD VV+ R+G+V
Sbjct: 301 VRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDV 360
Query: 394 IPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQH 453
IP++ + +LS RP +++ P CP+C S + +E + RC+G I C AQRK L+H
Sbjct: 361 IPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRCTGGLI-CGAQRKESLKH 419
Query: 454 FSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513
F SR+AM++ G+G K+I++LV V T DL+++ L LDR+ K A N++ A++K
Sbjct: 420 FVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGLDRMGPKSAQNVVNALEK 479
Query: 514 SKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIK 573
+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++L +P +G
Sbjct: 480 AKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFN 539
Query: 574 FINQPLHRLLISQLRDVGIYW----------LNNP------------------NTK---- 601
F + +R +I QL G++W +++P + K
Sbjct: 540 FFAEESNRDVIVQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAKARLV 599
Query: 602 --GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
G KV +SK T+ ++ G+ G KL KA +L I ++DE ++++
Sbjct: 600 ALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 646
>gi|54296979|ref|YP_123348.1| DNA ligase [Legionella pneumophila str. Paris]
gi|81370862|sp|Q5X6E6.1|DNLJ_LEGPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|53750764|emb|CAH12171.1| DNA ligase [Legionella pneumophila str. Paris]
Length = 673
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 267/663 (40%), Positives = 402/663 (60%), Gaps = 35/663 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ LK+++ +++ YY+ D P++ D +YD+ L++ EE+YP+ L+ DS TQ V
Sbjct: 10 IETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSPTQRVSGTPS 69
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ +++ F KR +L + + + + E K DG+AVN+ YE
Sbjct: 70 DAFMPVAHKQPMLSLSNVFTIDELKAFIKRAIEKLDEPNQQLVFACEPKLDGLAVNMTYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG +GENIT NI I +PL L + PP+L+EVR EV I K DF N
Sbjct: 130 GGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIPKADFEAYNA 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
LG K F NPRNAAAG LRQLNP+I+ ++ L + + +G +P+SH E LN
Sbjct: 190 RARELGEKTFANPRNAAAGSLRQLNPEISASRPLAIYCYSIGACEDYKLPNSHLEQLNLL 249
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ G + E GV +++Y+ + KR LP+EIDGVVYKI+ +S Q++LG+ SRA
Sbjct: 250 KEFGFRVSPETRRAIGVEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQQQLGYVSRA 309
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PRFA A+KF + E +T++ A++ Q+GRTG +TPVA L+PV + G+T++ ATLHN EI R
Sbjct: 310 PRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNATLHNFDEITR 369
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGDTV++ R+G+VIP++ S IL RP +++ ++P CP+C S+++ IARC
Sbjct: 370 KDIRIGDTVIIRRAGDVIPEVVSVILEKRPINARKIELPKNCPVCGSEVVREADEAIARC 429
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
G + C AQ K + HF+SRKAM I GLG +I++LV+ IV DLY+++ + L L
Sbjct: 430 IGG-LYCKAQLKRMMWHFASRKAMYIEGLGSVLIDQLVDEGIVHHLADLYELDLQTLANL 488
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
R+ K A N+L A++KSK TTF+RF+YALGIR +GE A+ LA ++ ++E + AT E+
Sbjct: 489 PRMGEKSAKNLLSALEKSKKTTFNRFLYALGIREIGEAGARVLAEHYCDVESLKSATIEE 548
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------LNNPN---------- 599
L+ + IG + F Q + +I +L ++GI+W +N N
Sbjct: 549 LMTLNDIGPVAASHVVHFFAQAHNLEVIDRLLELGIHWPKPEKIQVNQQNPFFGKTVVLT 608
Query: 600 ----------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +S T+Y++ G + G KL KA +L + I++E F+
Sbjct: 609 GTLSAMGREEAKAKLLALGAKVSGSVSSKTDYVIAGSEAGSKLIKATELGVAIIEEDEFL 668
Query: 644 KIV 646
K V
Sbjct: 669 KWV 671
>gi|365838051|ref|ZP_09379406.1| DNA ligase [Hafnia alvei ATCC 51873]
gi|364560609|gb|EHM38537.1| DNA ligase [Hafnia alvei ATCC 51873]
Length = 678
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 258/661 (39%), Positives = 390/661 (59%), Gaps = 37/661 (5%)
Query: 22 KKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSK 81
+ L H Y++ D P I D +YD+L+ EL+ +EE++PEL+T DS TQ VG
Sbjct: 17 RTALRHHEYQYHVLDAPEIPDAEYDRLMRELRALEEQHPELITPDSPTQRVGAAPLSAFS 76
Query: 82 YVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLK 141
V H M+SLDN F DE + F+KR+ + LK + + + ELK DG+AV+L YE G L
Sbjct: 77 QVRHEVPMLSLDNVFDDESYLAFDKRVHDRLKTAEPLTFCCELKLDGLAVSLLYEDGVLV 136
Query: 142 QASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHL 201
+ +TRGDG GE+IT N+ I IPL L P +EVR EV + F +N+
Sbjct: 137 RGATRGDGTTGEDITANVKTIRAIPLRLQGDNIPRRVEVRGEVFMPLAGFEAMNEEARRK 196
Query: 202 GLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGL 261
K F NPRNAAAG LRQL+P+I + L FF +GVG + G +P+SH L ++ GL
Sbjct: 197 DGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLMDGGELPASHYARLQQFKAWGL 256
Query: 262 SICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFAL 321
+ +G +++++FY+++ R L ++IDGVV K++ + Q++LGF +RAPR+A
Sbjct: 257 PVSDRVKRCTGSDEVLKFYRQVEQDRPTLGFDIDGVVIKVDSIEIQEQLGFVARAPRWAT 316
Query: 322 AYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQI 381
A+KF ++E +T + + Q+GRTG ITPVA L+PVL+ G+ ++ ATLHN EI R ++I
Sbjct: 317 AFKFPAQEQMTVVNGVEFQVGRTGAITPVARLEPVLVAGVIVSNATLHNADEIDRLGLRI 376
Query: 382 GDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWI 441
GDTV+V R+G+VIP++ + + RP +++ P CP+C S + +E +ARC+G I
Sbjct: 377 GDTVIVRRAGDVIPQVVGVVEAQRPENTQEIVFPQHCPVCGSDVERVEGEAVARCTGGLI 436
Query: 442 ECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSN 501
C AQRK L+HF SR+AM++ G+G K+IE+LV V T DLY++ L LDR+
Sbjct: 437 -CGAQRKESLKHFVSRRAMDVDGMGDKIIEQLVEKEYVKTPADLYRLTAGILTGLDRMGP 495
Query: 502 KLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIP 561
K A N++ A+ KSK TT +RF+YALGIR VGE TA LA +F +LE + +A E L ++
Sbjct: 496 KSATNLVNALAKSKETTLARFLYALGIREVGEATAANLAAHFGSLEALREADVEALKSVQ 555
Query: 562 KIGSTTVKAFIKFINQPLHRLLISQL--RDVGIYW----------LNNP----------- 598
+G K F+ + ++ +I +L ++GI+W +++P
Sbjct: 556 DVGEVVAKHVRHFLGEEHNQKVIDELISDEIGIHWPAPQVIVAEEIDSPFAGKTVVLTGS 615
Query: 599 -------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
G KV +SK T+ ++ G+ G KL KA +L I ++DE +++
Sbjct: 616 LSLMPRDEAKDRLAALGAKVSGSVSKKTDMVIAGEAAGSKLAKAQELGIPVIDEAEMIRL 675
Query: 646 V 646
+
Sbjct: 676 L 676
>gi|393762484|ref|ZP_10351111.1| NAD-dependent DNA ligase LigA [Alishewanella agri BL06]
gi|392606719|gb|EIW89603.1| NAD-dependent DNA ligase LigA [Alishewanella agri BL06]
Length = 682
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 262/670 (39%), Positives = 398/670 (59%), Gaps = 41/670 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+++L +N YY+ D P + D +YD+L EL+++E+++P L++ DS TQ VG G
Sbjct: 11 QIAQLRRQLEHYNYQYYVLDAPSVPDAEYDRLYRELQQLEQQHPSLISSDSPTQRVG--G 68
Query: 77 GENSKY--VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLR 134
+K+ V H M+SLDN F D D + F KR+ + L + + AE K DG+AV++R
Sbjct: 69 APLAKFSQVSHQVPMLSLDNAFDDSDFLAFVKRMQDRLDFAGDFSFCAEPKLDGLAVSIR 128
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194
YE G L QA+TRGDG+ GE+IT NI I IPL L + PP +LEVR EV + F +L
Sbjct: 129 YEQGVLVQAATRGDGSTGEDITANIRTIRAIPLRLTGEVPP-VLEVRGEVFMPLSGFERL 187
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL---RGMNMPSSHSE 251
N G K F NPRNAAAG LRQL+P + + L F+A+ VG+L + + H +
Sbjct: 188 NNDAKARGEKVFANPRNAAAGSLRQLDPAVTAKRPLMFYAYAVGQLDDPKALLNNRCHYQ 247
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
L + GL +C E ++ G + +Y++I KR L YEIDGVV K++ L+ Q+ LG
Sbjct: 248 RLQQLKDWGLPVCPEIRLVEGTAAALSYYQQILAKRAALSYEIDGVVIKVSNLAQQQALG 307
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+A+KF ++E LT + ++ Q+GRTG ITPVA L+PV + G+ ++ ATLHN+
Sbjct: 308 FVARAPRWAIAFKFPAQEMLTTLLDVDFQVGRTGAITPVARLEPVNVGGVMVSNATLHNQ 367
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI R ++IGD V+V R+G+VIP+I + + RP +K P CP+C S + +
Sbjct: 368 DEINRLGVEIGDKVIVRRAGDVIPQIVAVVTEQRPAQTKPVIFPEACPVCGSAVERVSGE 427
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARCSG + C AQ K L+HF SRKA++I GLG K++E+LV +V T +++++
Sbjct: 428 AVARCSGG-LYCAAQLKESLKHFVSRKALDIEGLGDKLVEQLVEQQLVKTPDAIFELDMP 486
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+L+ L+R+ K A +L AI+ +K TT RFIYALGIR VGE TA LAN+F +L+ +
Sbjct: 487 SLVGLERMGEKSALKLLNAIKAAKSTTLPRFIYALGIREVGEATALNLANHFASLDALMA 546
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------------- 594
A+ EQLL + +G+ + F +P ++ ++S L G++W
Sbjct: 547 ASIEQLLAVSDVGTVVAEHLYHFFREPHNQQVVSALLAQGLHWPTIALQQVTEQPLSGQT 606
Query: 595 ---------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
+ K G KV +S T+ ++ G+ G KL KA +L + + DE
Sbjct: 607 IVLTGTLSSMGRDEAKALLQRLGAKVSGSVSAKTHAVIAGENAGSKLAKASELQVPVWDE 666
Query: 640 KNFVKIVKGF 649
+ + + K +
Sbjct: 667 QQMLDLFKQY 676
>gi|392554314|ref|ZP_10301451.1| NAD-dependent DNA ligase [Pseudoalteromonas undina NCIMB 2128]
Length = 673
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 266/668 (39%), Positives = 393/668 (58%), Gaps = 33/668 (4%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S +S ++ L+ L +HN +YY+ D P I D +YD+LL L ++E ++PE LT DS TQ
Sbjct: 3 SSISEQINHLRTTLEQHNYSYYVLDTPSIPDAEYDRLLRTLSELETQHPEFLTADSPTQK 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + V H M+SLDN F +++ FN+RI L T+ + + E K DG+AV
Sbjct: 63 VGGAALAKFEQVAHQVPMLSLDNAFGEDEFNGFNRRIKERLMSTEELTFCCEPKLDGLAV 122
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
++ Y G L QA+TRGDG GENIT N+ I +PL L P LEVR EV + F
Sbjct: 123 SIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDDYPRELEVRGEVFMDSAGF 182
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN G K F NPRNAAAG LRQL+ KI + L F+A+ G + +P H +
Sbjct: 183 EKLNAEAEKRGDKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGTLPEDHYQ 242
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
L GL +C E ++ G + +Y I +R L YEIDGVV K+N + Q++LG
Sbjct: 243 QLAKLTDWGLPLCPETKLVEGPKAALAYYNDILTRRSELKYEIDGVVIKVNKKALQERLG 302
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 303 FVARAPRWAIAYKFPAQEEITHLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNA 362
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI R +++GDTV++ R+G+VIP+IT +L RP+D+K P +CPIC+S + +E
Sbjct: 363 DEIARLGVKVGDTVIIRRAGDVIPQITQVVLEQRPSDAKAIVFPTMCPICDSHVERVEGE 422
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC+G + C AQRK ++HF+SRKA++I GLG K++++LV+ ++ T DL+ +
Sbjct: 423 AVARCTGGLV-CQAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPADLFILKQG 481
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L+R+ K A N++ A+ +K TT ++F+Y+LGIR VGE TA+ LAN+F LE +
Sbjct: 482 HFESLERMGPKSAKNLVAALDDAKTTTLAKFLYSLGIREVGEATAQNLANHFLTLENVID 541
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------------- 594
A+ EQL+ + +G K F + + ++++L G+ W
Sbjct: 542 ASIEQLIEVSDVGEIVAKHVRGFFAEEHNLTVVNELIAQGVNWPQLTAPSEQEQPLEGLT 601
Query: 595 ---------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
LN + K G KV IS T+ LV G+K G KL KA +L I+IL E
Sbjct: 602 YVLTGTLNTLNRNDAKARLQQLGAKVSGSISAKTDALVAGEKAGSKLTKAQELGIEILTE 661
Query: 640 KNFVKIVK 647
+ + +++
Sbjct: 662 DDLITLLE 669
>gi|343504944|ref|ZP_08742602.1| NAD-dependent DNA ligase LigA [Vibrio ichthyoenteri ATCC 700023]
gi|342809742|gb|EGU44847.1| NAD-dependent DNA ligase LigA [Vibrio ichthyoenteri ATCC 700023]
Length = 669
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 263/672 (39%), Positives = 404/672 (60%), Gaps = 42/672 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+++ ++ +L++ LH H + YY+ D+P I D +YD+L+ EL +E +YP+L+T DS +Q
Sbjct: 3 TEIQPKLEQLRETLHYHAVRYYVEDSPEIPDAEYDRLMRELLDLEAQYPDLVTIDSPSQR 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + + V H M+SLDN F D ++ F+KR+++ L + + E K DG+A+
Sbjct: 63 VGGKPLDGFESVAHEIPMLSLDNAFDDSELESFHKRMSDRLPAAQFDLFCCEPKLDGLAI 122
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L Y G L QA+TRGDG GEN+T N+ I IPL L + P +EVR EV + K F
Sbjct: 123 SLLYVDGVLVQAATRGDGTTGENVTENVRTISAIPLKLRGEGWPNRIEVRGEVFMPKAGF 182
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN+ G K F NPRNAAAG LRQL+ +I + L F+A+ VG + G + SH E
Sbjct: 183 DKLNQIALKKGEKPFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVEGEPLSLSHYE 242
Query: 252 ----LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQ 307
L NW GL +C E ++ ++++ +Y I +R L YEIDGVV K++ ++ Q
Sbjct: 243 RFLQLKNW----GLPMCPETKLVKSLDEVKAYYHDILERRDALAYEIDGVVIKVDDVTLQ 298
Query: 308 KKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRAT 367
++LGF +RAPR+A+AYKF ++E +T + + Q+GRTG ITPVA L+P+ + G+T++ AT
Sbjct: 299 ERLGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNAT 358
Query: 368 LHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIY 427
LHN EI R ++IGD+V++ R+G+VIP++ S +L RP ++ P CP+CNS +
Sbjct: 359 LHNADEIARLAVKIGDSVIIRRAGDVIPQVVSVVLDRRPESARDIVFPTQCPVCNSAVER 418
Query: 428 IESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYK 487
+E +ARC+G + C AQRK L+HF SRKA+++ GLG+K+IE+LV+ +V T DL+K
Sbjct: 419 VEGEAVARCTGGLV-CQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDKEMVATPADLFK 477
Query: 488 INFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLE 547
++ + L+R+ K A N++ A+ K+K TT RF+Y+LGIR VGE TA LA YFK L+
Sbjct: 478 LSAGVITVLERMGPKSAQNVVDALVKAKQTTLPRFLYSLGIREVGEATAANLAMYFKTLD 537
Query: 548 CMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------- 594
+ A+ EQL+ + +G F Q ++ +I++L+ GI W
Sbjct: 538 AVMAASHEQLIEVQDVGVIVASHVTAFFAQEKNQQVIAELQQQGIDWPAIAERDDSVPQP 597
Query: 595 --------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNI 634
L+ + K G KV +SK T+ L G+ G KL KA +L I
Sbjct: 598 LAGKTVVLTGSLSQLSRSDAKAALQNLGAKVAGSVSKKTDILFVGENAGSKLAKAQELGI 657
Query: 635 KILDEKNFVKIV 646
++ E++ + ++
Sbjct: 658 EVQTEQDLINLM 669
>gi|350553202|ref|ZP_08922385.1| DNA ligase [Thiorhodospira sibirica ATCC 700588]
gi|349791538|gb|EGZ45419.1| DNA ligase [Thiorhodospira sibirica ATCC 700588]
Length = 685
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 260/663 (39%), Positives = 385/663 (58%), Gaps = 41/663 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV +L+ +++ HN Y++ D P+ISD ++D LL EL+ +E +PELLT DS TQ G
Sbjct: 8 RVQQLRTQINEHNYRYHVLDAPLISDAQFDALLRELQALETAHPELLTPDSPTQTAGFAP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK----LTKNIEYIAELKFDGIAVN 132
+ H M+SL+N FS+ + F++R+ L+ T Y E K DG+AV+
Sbjct: 68 LKAFAPAVHRVPMLSLENAFSEAEAEAFDRRVHERLRKHGEATLRAGYAVEPKLDGLAVS 127
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
L Y +G L +A+TRGDG GE +T NI I IP L+ P LEVR EV + K F
Sbjct: 128 LLYAHGELVRAATRGDGQTGEEVTQNIRTIRVIPWRLSGAQHPAHLEVRGEVYMEKAAFA 187
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
+ N G + F N RNAAAG LRQL+ ++ + L FFA+GVG +P +HS +
Sbjct: 188 QFNAQAAAQGERVFVNARNAAAGSLRQLDARLTARRPLSFFAYGVGACEPALLPDTHSAI 247
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
L + GL +C E + + + + +Y+ I +R LPYEIDGVVYK+N L Q++LG
Sbjct: 248 LEQLAQWGLPVCPERATAADLAGCLAYYQAIGARRDALPYEIDGVVYKVNQLDQQQQLGS 307
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
SRAPR+A+A+K+ ++E T + + Q+GRTG +TPVA L PV + G T++ ATLHN
Sbjct: 308 ASRAPRWAIAHKYAAQEQTTTLLDVQFQVGRTGALTPVARLAPVFVGGATVSNATLHNMD 367
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
E+ RK+++IGDTV V R+G VIP++ +L RP ++ +P CP C +++I +
Sbjct: 368 ELRRKDVRIGDTVWVRRAGEVIPEVVGVVLEQRPPHAQTISLPTQCPECQAEVITLPGEA 427
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
+ARCSG + C AQR+ ++HF++R+AM+I GLG K++E+L+ +V T +LY+++
Sbjct: 428 VARCSGG-LYCPAQRREAIKHFAARRAMDIEGLGDKLVEQLLEQGLVRTVDELYQLHLAP 486
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
L L R+ K A N+L A+ +SK TT +RF++ALGIR VGE TA+ LA ++ +L+ + +A
Sbjct: 487 LSALARMGPKSAQNLLDALDRSKHTTLARFLFALGIREVGEATARLLAQHYPDLDTLMQA 546
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP-------------- 598
+ E+L IP IG + +F QP H +I +LR GI+W P
Sbjct: 547 SVEELQQIPDIGPVVAQHIHQFFRQPHHLQIIERLRQAGIHWDQAPAAPALAAANALPLQ 606
Query: 599 ----------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
+G V N +SK T+ ++ G+ G KL KA L I I
Sbjct: 607 GQSYVLTGTLQSMTREQAGEALRQRGATVSNSVSKKTHAVIAGEAAGSKLSKAEALGIPI 666
Query: 637 LDE 639
LDE
Sbjct: 667 LDE 669
>gi|359451768|ref|ZP_09241157.1| DNA ligase [Pseudoalteromonas sp. BSi20480]
gi|358042394|dbj|GAA77406.1| DNA ligase [Pseudoalteromonas sp. BSi20480]
Length = 672
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 264/668 (39%), Positives = 393/668 (58%), Gaps = 34/668 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S +S ++ L+ L +HN YY+ D P I D +YD+LL EL +E + PE L+ DS TQ
Sbjct: 3 SSISEQINHLRTLLEQHNYNYYVLDTPSIPDAEYDRLLRELSALETQNPEFLSADSPTQK 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + V H M+SLDN FS+++ FN+RI L T + + E K DG+AV
Sbjct: 63 VGGAALSKFEQVAHQVPMLSLDNAFSEDEFTGFNRRIKERLMSTDELTFCCEPKLDGLAV 122
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
++ Y G L QA+TRGDG GENIT N+ I +PL L YP EL EVR EV + F
Sbjct: 123 SIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKEL-EVRGEVFMDSAGF 181
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN G K F NPRNAAAG LRQL+ KI + L F+A+ G + ++P H +
Sbjct: 182 EKLNNEAQKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIPEDHFQ 241
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
L GL +C E ++ G +++Y I +R L YEIDGVV K+N + Q++LG
Sbjct: 242 QLEKLTDWGLPLCPETKLVEGPQAALDYYDDILTRRSELKYEIDGVVIKVNKKALQERLG 301
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+AYKF ++E +T++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 302 FVARAPRWAIAYKFPAQEEVTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNG 361
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI R +++GDTV++ R+G+VIP+IT +L RP D++ P+ CPIC+S + +E
Sbjct: 362 DEIARLGVKVGDTVIIRRAGDVIPQITQVVLERRPTDARDIVFPSACPICDSHVEKVEGE 421
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC+G + C AQRK ++HF+SRKA++I GLG K++++LV+ ++ T DL+ +
Sbjct: 422 AVARCTGGLV-CPAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPADLFILKQG 480
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L+R+ K A N++ A+ ++K TT ++F+Y+LGIR GE TA+ LAN+F LE +
Sbjct: 481 HFESLERMGPKSAKNLVTALNEAKATTLAKFLYSLGIREAGEATAQNLANHFLTLENIIS 540
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------------- 594
A+ E L + +G F ++ + +++ L + G++W
Sbjct: 541 ASVESLTQVSDVGDIVASHVRGFFDEEHNLAVVNALIEQGVHWPALSAPSEDEQPLAGLT 600
Query: 595 ---------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
LN + K G KV +S T+ LV G+K G KL KA L I +L E
Sbjct: 601 YVLTGTLNTLNRNDAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDVLTE 660
Query: 640 KNFVKIVK 647
+ ++++K
Sbjct: 661 DDLIELLK 668
>gi|385788997|ref|YP_005820106.1| NAD-dependent DNA ligase LigA [Erwinia sp. Ejp617]
gi|310768269|gb|ADP13219.1| NAD-dependent DNA ligase LigA [Erwinia sp. Ejp617]
Length = 670
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 257/665 (38%), Positives = 397/665 (59%), Gaps = 38/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++T L+ L + Y++ D P + D +YD+L+ EL+++E ++PELLT DS TQ VG
Sbjct: 7 KITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRELEAQHPELLTSDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F +E + FNKR+ + LK T +I + ELK DG+AV+L YE
Sbjct: 67 LSVFEQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDDITFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT N+ I IPL L+ PE LEVR EV + F ++N+
Sbjct: 127 KGELVRAATRGDGTTGENITANVRTIRAIPLRLSGDNIPERLEVRGEVFMPLVGFEQMNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +G+G L G MP SH L +
Sbjct: 187 QARSSGQKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEMPRSHRARLQRF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + ++++FY ++ R L ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVRLCHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PVL+ G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVLVAGVMVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ S + + ++++ P CP+C S + +E ++ARC
Sbjct: 367 LGLKIGDRVVIRRAGDVIPQVMSVVET--GDNAREIAFPTRCPVCGSDVERVEGEVVARC 424
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A++I G+G+K+I++LV+ V +L+++ L L
Sbjct: 425 TGGLI-CGAQRKGALKHFVSRRALDIDGMGEKIIDQLVDKEYVKNPAELFELTAGKLTGL 483
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A+ K+K TTF+RF+YALGI VGE TA LA +F L+ + A +
Sbjct: 484 DRMGPKSAQNVVNALVKAKQTTFARFLYALGISEVGEATAANLAAHFGTLDALMAADLDA 543
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRD-VGIYW----------LNNP------- 598
L+ + +G F+++ +R +I L D G+ W +++P
Sbjct: 544 LMAVQDVGKVVASHVRNFLDEESNREIIRLLVDKAGVNWPQVMVVKAEEIDSPFAGKTVV 603
Query: 599 -----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G KV +SK T+ ++ G+ G KL KA +L I ++DE+
Sbjct: 604 LTGSLSILSRDEAKDRLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKARELGIDVIDEQE 663
Query: 642 FVKIV 646
++++
Sbjct: 664 MIRLL 668
>gi|387814523|ref|YP_005430009.1| DNA ligase, NAD(+)-dependent [Marinobacter hydrocarbonoclasticus
ATCC 49840]
gi|381339539|emb|CCG95586.1| DNA ligase, NAD(+)-dependent [Marinobacter hydrocarbonoclasticus
ATCC 49840]
Length = 678
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 265/663 (39%), Positives = 387/663 (58%), Gaps = 33/663 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV L+ L HN YY+ D+P I D +YD+L EL+K+E ++PEL T+DS T+ VG
Sbjct: 11 RVDSLRATLEDHNYYYYVQDDPRIPDAEYDRLFRELQKLEAEHPELATEDSPTRRVGSSA 70
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SLDN FS++++ F++R+ + L IEY+ E K DG+AV+L YE
Sbjct: 71 ETSFEEVTHRLPMLSLDNAFSEDELRDFDRRVRDRLGEDGAIEYVCEPKLDGLAVSLHYE 130
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+IT NI I +PL L P+L+EVR EV + + F KLN+
Sbjct: 131 NGTLTRAATRGDGYTGEDITANIRTIPSVPLKLRGSGYPDLVEVRGEVYMPRAGFEKLNE 190
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQ + + L A+ + +P +H + L
Sbjct: 191 RLAEQGEKTFVNPRNAAAGSLRQKKSTVTARRPLELCAYSMAVTDESVLPETHWDSLQLV 250
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ G I E GV ++ Y ++ KR +LPYEIDG+V+K+N L Q++LGF SRA
Sbjct: 251 RDWGFRINPEMRKAEGVEACLDAYNELMAKRDSLPYEIDGIVFKVNRLDLQQELGFVSRA 310
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E LT I+ + Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R
Sbjct: 311 PRWAIAHKFPAQEELTIIEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNMDEIRR 370
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++ IGDTV + R+G+VIP++ + RP + + ++P CP+C S I+ IE +ARC
Sbjct: 371 LDVHIGDTVFIRRAGDVIPQVVKVVPEKRPAMAPMVEMPEHCPVCGSDIVQIEGEAVARC 430
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG + C AQRK ++H++SRKAM+I GLG ++IE LV+ +V T DLY++ + L
Sbjct: 431 SGG-LYCPAQRKEAIRHYASRKAMDIEGLGDRLIEMLVDEGMVSTVADLYRLTKFQIASL 489
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ +K A N+ AI +S+ RF+YALGIR VGE TAK LA +F LE + +A EE
Sbjct: 490 ERMGDKSAANLTAAIDRSREPVLWRFLYALGIREVGEATAKGLAAHFGTLEAISEADEES 549
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L +P +G F +QP ++ ++ L+ G+ W
Sbjct: 550 LQTVPDVGPIVAGHIRSFFDQPHNQETLAALKKAGVTWQEEHVLSVDEQPLSGQTWVLTG 609
Query: 595 ----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
+ K G KV +SK T +V G+ G KL KA +L + +LDE
Sbjct: 610 TLSGMTRDQAKEKLEQLGAKVAGSVSKKTACVVAGEAAGSKLAKAEQLGVPVLDEAGLAD 669
Query: 645 IVK 647
+++
Sbjct: 670 LLR 672
>gi|120598462|ref|YP_963036.1| NAD-dependent DNA ligase [Shewanella sp. W3-18-1]
gi|166216244|sp|A1RII7.1|DNLJ_SHESW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|120558555|gb|ABM24482.1| DNA ligase, NAD-dependent [Shewanella sp. W3-18-1]
Length = 685
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 259/659 (39%), Positives = 397/659 (60%), Gaps = 38/659 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L + L+ HNI YY+ D P I+D++YD+L+ L K+E ++P+ + DS TQ VG +
Sbjct: 26 LSQSLNEHNIRYYVDDAPTITDSEYDRLMQCLIKLEAQFPQFIVADSPTQRVGGLALAKF 85
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ H M+SLDN F + D F+KR+T+++ + + E K DG+AV++ Y +G L
Sbjct: 86 DQITHLKPMLSLDNAFGEADFSAFHKRVTDKVG---EVSFCCEPKLDGLAVSILYRHGVL 142
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
++A+TRGDG +GE+IT N+ I IPL L PE++EVR E + K F LN+
Sbjct: 143 ERAATRGDGTVGEDITENVKTIKSIPLKLRGNDFPEVVEVRGEAFMPKAAFEALNERARA 202
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPSSHSELLNWYQK 258
K F NPRNAAAG LRQL+ KI ++ L F+A+ +G E ++ +H E L +
Sbjct: 203 KDEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPDSYSLGKTHYEQLQQLKS 262
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL + E V ++++ ++YK I +R +LP+EIDGVV K+N ++ Q++LGF +++PR
Sbjct: 263 WGLPVSNEIKVCEELDQVFDYYKDILTRRSDLPFEIDGVVMKVNDIAQQQRLGFVAKSPR 322
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E +T ++ ++ Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R
Sbjct: 323 WAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIERLG 382
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
I+IGDTV++ R+G+VIP+I + + RP + P+ CP+C S + +E +ARCSG
Sbjct: 383 IKIGDTVIIRRAGDVIPQIVAIVPERRPETATDIVFPHNCPVCGSLVERLEGEAVARCSG 442
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+K+ + LDR
Sbjct: 443 GLF-CEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVQSPADLFKLTASMMTMLDR 501
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N+ AI+ +K TT +RF+YALGIR VGE TA LA +F +L+ + AT EQL
Sbjct: 502 MGMKSATNLAAAIEAAKTTTLARFLYALGIREVGEATAANLAAHFASLDALRVATVEQLT 561
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-----------------------L 595
+ +G + F QP + +I L G++W L
Sbjct: 562 AVEDVGVVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSADAQPLKGQTWVLTGTL 621
Query: 596 NNPN---------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
N N T G KV +SKNT+ LV G+ G KL KA +L +K++DE+ + +
Sbjct: 622 NQLNRNDAKAQLQTLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIDEEALLAL 680
>gi|337285532|ref|YP_004625005.1| DNA ligase, NAD-dependent [Thermodesulfatator indicus DSM 15286]
gi|335358360|gb|AEH44041.1| DNA ligase, NAD-dependent [Thermodesulfatator indicus DSM 15286]
Length = 693
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 273/669 (40%), Positives = 401/669 (59%), Gaps = 42/669 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV +L++E+ HN YY+ D+P+ISD +YD L+ ELK++E KYPEL+T DS TQ VG
Sbjct: 23 RVKKLREEIEYHNYRYYVLDSPVISDAEYDALMRELKELEAKYPELVTPDSPTQRVGYPP 82
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN--IEYIAELKFDGIAVNLR 134
+ + V H M+SLD+ ++E+V F++RI L L ++ IEY E K DG+AV L
Sbjct: 83 AKEFRQVPHAEPMLSLDDAMTEEEVYEFDRRIKRLLNLPEDAQIEYTVEPKLDGLAVELV 142
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVL-----NIKYPPELLEVRCEVLIYKK 189
YE G STRGDG +GE++T N+ I IPL L + P+ L+ R EV + K+
Sbjct: 143 YENGVFTVGSTRGDGYVGEDVTNNLKTIKSIPLRLRPLTDDAPPVPKRLDARGEVFMEKE 202
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LN+ R G F NPRNAAAG LRQL+P I + L F +GVG++ G +
Sbjct: 203 KFKQLNEERIKKGEPPFANPRNAAAGSLRQLDPNITAQRPLDIFFYGVGKVEGHKF-KTQ 261
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
E+L K GL ++ G+ + I ++ ++ KR LPYEIDGVV K+N LS +K
Sbjct: 262 WEVLTTLPKWGLKTNPLCRLIKGIKEAIAYHHELEKKRDELPYEIDGVVIKVNDLSLWEK 321
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LG +R+PR+ALAYKF + T++ I +Q+GRTG +TPVA+LKPV + G+ ++RATLH
Sbjct: 322 LGTKARSPRYALAYKFEPTQVTTQVLDIVVQVGRTGAVTPVAILKPVKVGGVIVSRATLH 381
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
NE E+ RK+I+IGD V+V R+G+VIP++ I R K F++P CP+C SK++
Sbjct: 382 NEDEVRRKDIRIGDWVLVQRAGDVIPEVVMPIKERRTGKEKPFEMPKTCPVCGSKLVRKP 441
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ RC C AQ LQHF+SR AM+I GLG+++ + LV+ +V DLY ++
Sbjct: 442 GEAVWRCPNK--NCYAQLVRHLQHFASRNAMDIEGLGEQVAKALVDMGLVRDVGDLYYLS 499
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
++ L+L + K A N+ AIQKSK TT RF+YALGIRHVGE A+ LA +FK+L+ +
Sbjct: 500 VEDFLQLPGFALKKAQNLYNAIQKSKKTTLPRFLYALGIRHVGEVAAQTLAEHFKSLDKI 559
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN----NPNTK---- 601
A+ +L+ IP +G ++ +++ P +R +I +L GI + + P K
Sbjct: 560 MNASMAELMAIPGVGPEMARSIVEYFRNPHNREVIEKLLKAGIEFEDLKEEKPEEKSLKG 619
Query: 602 ------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
GGKV + +S+N +Y+V G+KPG K +A +L +KI+
Sbjct: 620 LTFVFTGALKTMTRDEAKKKVQALGGKVASDVSRNVDYVVVGEKPGSKFTRAQRLGLKII 679
Query: 638 DEKNFVKIV 646
E F+K++
Sbjct: 680 GEDEFLKMI 688
>gi|166216288|sp|Q0HWD2.2|DNLJ_SHESR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
Length = 688
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 258/660 (39%), Positives = 391/660 (59%), Gaps = 38/660 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L + L+ HNI YY+ D P I+D++YD+L+ LK++E +YP+ + DS TQ VG +
Sbjct: 30 LCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAADSPTQRVGGMALAKF 89
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ + H M+SLDN F + D F+KR+++ + + + E K DG+AV++ Y G L
Sbjct: 90 EQITHLKPMLSLDNAFDEADFSAFHKRVSDRVG---EVSFCCEPKLDGLAVSILYRNGVL 146
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
++A+TRGDG +GE+IT N+ I IPL L PEL+EVR E + K F LN+
Sbjct: 147 ERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVRGEAFMPKAAFEALNERARL 206
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPSSHSELLNWYQK 258
K F NPRNAAAG LRQL+ KI ++ L F+A+ +G E + +H E L +
Sbjct: 207 KDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPTSHELAKTHYEQLQQLKS 266
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL + E V ++++ +Y+ I +R +LP+EIDGVV K+N ++ Q+ LGF +++PR
Sbjct: 267 WGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVVMKVNDIAQQQTLGFVAKSPR 326
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E +T ++ ++ Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R
Sbjct: 327 WAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIERLG 386
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
+ +GDTV++ R+G+VIP+I + + RP D+K P CP+C S + +E + RCSG
Sbjct: 387 VMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKAIAFPQHCPVCGSLVERLEGEAVTRCSG 446
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+K+ + LDR
Sbjct: 447 GLF-CEAQRKEAIKHFASRKALDIDGMGDKIVEQLIDKELVQSPADLFKLTASMMTMLDR 505
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N+ AI+ +K TT RF+YALGIR VGE TA LA +F +LE + AT EQL+
Sbjct: 506 MGMKSATNLAQAIEAAKTTTLPRFLYALGIREVGEATAANLATHFGSLEALRVATIEQLI 565
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------ 594
+ IG + F QP + +I L G+ W
Sbjct: 566 QVEDIGEVVAQHVAHFFAQPHNLEVIDALITAGVNWPTIAAPSADEQPLKGQTWVLTGTL 625
Query: 595 --LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
LN + K G KV +SKNT+ LV G+ G KL KA +L +K++ E + ++
Sbjct: 626 NQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 685
>gi|114047080|ref|YP_737630.1| DNA ligase, NAD-dependent [Shewanella sp. MR-7]
gi|113888522|gb|ABI42573.1| DNA ligase, NAD-dependent [Shewanella sp. MR-7]
Length = 690
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 258/660 (39%), Positives = 391/660 (59%), Gaps = 38/660 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L + L+ HNI YY+ D P I+D++YD+L+ LK++E +YP+ + DS TQ VG +
Sbjct: 32 LCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAADSPTQRVGGMALAKF 91
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ + H M+SLDN F + D F+KR+++ + + + E K DG+AV++ Y G L
Sbjct: 92 EQITHLKPMLSLDNAFDEADFSAFHKRVSDRVG---EVSFCCEPKLDGLAVSILYRNGVL 148
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
++A+TRGDG +GE+IT N+ I IPL L PEL+EVR E + K F LN+
Sbjct: 149 ERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVRGEAFMPKAAFEALNERARL 208
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPSSHSELLNWYQK 258
K F NPRNAAAG LRQL+ KI ++ L F+A+ +G E + +H E L +
Sbjct: 209 KDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPTSHELAKTHYEQLQQLKS 268
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL + E V ++++ +Y+ I +R +LP+EIDGVV K+N ++ Q+ LGF +++PR
Sbjct: 269 WGLPVSSEIKVCDELSQVFAYYQDILTRRADLPFEIDGVVMKVNDIAQQQTLGFVAKSPR 328
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E +T ++ ++ Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R
Sbjct: 329 WAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIERLG 388
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
+ +GDTV++ R+G+VIP+I + + RP D+K P CP+C S + +E + RCSG
Sbjct: 389 VMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKAIAFPQHCPVCGSLVERLEGEAVTRCSG 448
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+K+ + LDR
Sbjct: 449 GLF-CEAQRKEAIKHFASRKALDIDGMGDKIVEQLIDKELVQSPADLFKLTASMMTMLDR 507
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N+ AI+ +K TT RF+YALGIR VGE TA LA +F +LE + AT EQL+
Sbjct: 508 MGMKSATNLAQAIEAAKTTTLPRFLYALGIREVGEATAANLATHFGSLEALRVATIEQLI 567
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------ 594
+ IG + F QP + +I L G+ W
Sbjct: 568 QVEDIGEVVAQHVAHFFAQPHNLEVIDALITAGVNWPTIAAPSADEQPLKGQTWVLTGTL 627
Query: 595 --LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
LN + K G KV +SKNT+ LV G+ G KL KA +L +K++ E + ++
Sbjct: 628 NQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 687
>gi|146293460|ref|YP_001183884.1| NAD-dependent DNA ligase [Shewanella putrefaciens CN-32]
gi|166216243|sp|A4Y802.1|DNLJ_SHEPC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|145565150|gb|ABP76085.1| DNA ligase, NAD-dependent [Shewanella putrefaciens CN-32]
Length = 685
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 259/659 (39%), Positives = 397/659 (60%), Gaps = 38/659 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L + L+ HNI YY+ D P I+D++YD+L+ L K+E ++P+ + DS TQ VG +
Sbjct: 26 LSQSLNEHNIRYYVDDAPTITDSEYDRLMQCLIKLEAQFPQFIVADSPTQRVGGLALAKF 85
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ H M+SLDN F + D F+KR+T+++ + + E K DG+AV++ Y +G L
Sbjct: 86 DQITHLKPMLSLDNAFGEADFSAFHKRVTDKVG---EVSFCCEPKLDGLAVSILYRHGVL 142
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
++A+TRGDG +GE+IT N+ I IPL L PE++EVR E + K F LN+
Sbjct: 143 ERAATRGDGTVGEDITENVKTIKSIPLKLRGNDFPEVVEVRGEAFMPKAAFEALNERARA 202
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPSSHSELLNWYQK 258
K F NPRNAAAG LRQL+ KI ++ L F+A+ +G E ++ +H E L +
Sbjct: 203 KDEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPDSYSLGKTHYEQLQQLKS 262
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL + E V ++++ ++YK I +R +LP+EIDGVV K+N ++ Q++LGF +++PR
Sbjct: 263 WGLPVSNEIKVCDELDQVFDYYKDILTRRSDLPFEIDGVVMKVNDIAQQQRLGFVAKSPR 322
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E +T ++ ++ Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R
Sbjct: 323 WAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIERLG 382
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
I+IGDTV++ R+G+VIP+I + + RP + P+ CP+C S + +E +ARCSG
Sbjct: 383 IKIGDTVIIRRAGDVIPQIVAIVPERRPETATNIVFPHNCPVCGSLVERLEGEAVARCSG 442
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+K+ + LDR
Sbjct: 443 GLF-CEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVQSPADLFKLTASMMTMLDR 501
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N+ AI+ +K TT +RF+YALGIR VGE TA LA +F +L+ + AT EQL
Sbjct: 502 MGMKSATNLAAAIEAAKTTTLARFLYALGIREVGEATAANLAAHFASLDALRVATVEQLT 561
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-----------------------L 595
+ +G + F QP + +I L G++W L
Sbjct: 562 AVEDVGVVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSADAQPLKGQTWVLTGTL 621
Query: 596 NNPN---------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
N N T G KV +SKNT+ LV G+ G KL KA +L +K++DE+ + +
Sbjct: 622 NQLNRNDAKAQLQTLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIDEEALLAL 680
>gi|160875869|ref|YP_001555185.1| NAD-dependent DNA ligase [Shewanella baltica OS195]
gi|378709071|ref|YP_005273965.1| NAD-dependent DNA ligase [Shewanella baltica OS678]
gi|418023665|ref|ZP_12662649.1| DNA ligase [Shewanella baltica OS625]
gi|190359285|sp|A9L5Z1.1|DNLJ_SHEB9 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|160861391|gb|ABX49925.1| DNA ligase, NAD-dependent [Shewanella baltica OS195]
gi|315268060|gb|ADT94913.1| DNA ligase, NAD-dependent [Shewanella baltica OS678]
gi|353536538|gb|EHC06096.1| DNA ligase [Shewanella baltica OS625]
Length = 685
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 260/653 (39%), Positives = 393/653 (60%), Gaps = 38/653 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L + L+ HNI YY+ D P I+D++YD+L+ L K+E YP L+ DS TQ VG +
Sbjct: 26 LSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVADSPTQRVGGLALAKF 85
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ H M+SLDN F + D F+KR+T+++ + + E K DG+AV++ Y +G L
Sbjct: 86 DQITHLKPMLSLDNAFDEADFSAFHKRVTDKVG---EVSFCCEPKLDGLAVSILYRHGVL 142
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
++A+TRGDG++GE+IT N+ I IPL L PEL+EVR E + K F LN
Sbjct: 143 ERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVRGEAFMPKAAFEALNDRARA 202
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP--SSHSELLNWYQK 258
K F NPRNAAAG LRQL+ KI + L F+A+ +G + + P +H E L +
Sbjct: 203 KDEKLFVNPRNAAAGSLRQLDSKITAARSLAFYAYALGVVEPDSHPLAKTHFEQLQQLKS 262
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL I E V + ++++ ++YK I +R +L +EIDGVV K+N ++ Q++LGF +++PR
Sbjct: 263 WGLPISSEIKVCAELSQVYDYYKDILTRRSDLAFEIDGVVMKVNDIAQQQRLGFVAKSPR 322
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E +T ++ ++ Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R
Sbjct: 323 WAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIARLG 382
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
I++GDTV++ R+G+VIP+I + + RP + P+ CP+C S + +E +ARCSG
Sbjct: 383 IKVGDTVIIRRAGDVIPQIVAIVPERRPETATDIVFPHNCPVCGSLVERLEGEAVARCSG 442
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+K+ + LDR
Sbjct: 443 GLF-CEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVQSPADLFKLTASMMTMLDR 501
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N+ AI+ +K TT +RF+YALGIR VGE TA LA +F +L+ + AT EQL
Sbjct: 502 MGMKSATNLAAAIEAAKTTTLARFLYALGIREVGEATAANLAAHFASLDALRVATVEQLT 561
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------ 594
+ +G+ + F QP + +I L G++W
Sbjct: 562 EVEDVGAVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSADAQPLKGQTWVLTGTL 621
Query: 595 --LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
LN + K G KV +SKNT+ LV G+ G KL KA +L +K++DE
Sbjct: 622 NQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDE 674
>gi|429462636|ref|YP_007184099.1| DNA ligase [Candidatus Kinetoplastibacterium crithidii (ex
Angomonas deanei ATCC 30255)]
gi|429338150|gb|AFZ82573.1| DNA ligase [Candidatus Kinetoplastibacterium crithidii (ex
Angomonas deanei ATCC 30255)]
Length = 694
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 272/680 (40%), Positives = 419/680 (61%), Gaps = 56/680 (8%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ L+KE+ HNI Y+ YD+P+ISD +YD L+ +L K+E +P+L+ +S TQ VG
Sbjct: 19 ILSLRKEIDFHNINYHCYDDPLISDAQYDALVDKLVKLELLHPDLIDPNSPTQRVGSSPL 78
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRI------TNELKLTKNIEYIAELKFDGIAV 131
+ H M+SL N F D+DV+ F+ R+ N + +++ Y +LKFDG+A+
Sbjct: 79 PYFNQIEHEVPMLSLSNAFKDDDVVSFDARVKKLLYDNNLVSPKEDVCYFCDLKFDGLAI 138
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
N+RYE G L ASTRGDGN+GE++T+NI I +PL+L+ P++LEVR EV + DF
Sbjct: 139 NIRYEKGLLVSASTRGDGNVGEDVTSNIRTIKSVPLILH-GVVPDILEVRGEVFMRHDDF 197
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSS--- 248
+LN ++ G K F N RNAAAG LR L+P++ ++ L FFA+G G ++ + +
Sbjct: 198 ERLNNHQRMNGDKLFMNTRNAAAGSLRNLDPRVTASRNLKFFAYGCGNIQNIFQEENFII 257
Query: 249 ---HSELLNWYQKIGLSICGEYS-VLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCL 304
HS ++NW IG + Y +++ + ++ FY+KIN R +LPY+IDGVVYK+N L
Sbjct: 258 SNYHSSVINWLSSIGFPVNKTYQEIVNSCSGMLNFYEKINNIRNSLPYDIDGVVYKVNSL 317
Query: 305 STQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITIT 364
QK LG++SRAPRFALA+KF +EA+TK+ +I++Q+GRTG ITPVA L PVLI G I+
Sbjct: 318 VFQKTLGYSSRAPRFALAHKFSPEEAVTKLLSIDVQVGRTGAITPVARLDPVLISGANIS 377
Query: 365 RATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSK 424
ATLHNE+EI RK+++IGD V + R+G+VIP++ + LR N IF +P+ CPICNS
Sbjct: 378 SATLHNENEIIRKDLRIGDFVRIRRAGDVIPEVIEVVKELRSNVVSIFNMPHYCPICNSL 437
Query: 425 IIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVD 484
+ I+ + RC+G C AQ K L H RKA+NIIG G+ +I KLV++N + + D
Sbjct: 438 LRRIDGESVTRCTGGLF-CSAQLKQRLLHAVGRKALNIIGFGESLIYKLVDSNRIKSLAD 496
Query: 485 LYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFK 544
+Y +N ++LL ++++ K ANNI+ +I +S+ RF+++LGIRHVG++TA +A+ F
Sbjct: 497 IYSLNIEDLLDIEKIGPKSANNIMESIDRSRSPKLDRFLFSLGIRHVGDSTANTIASKFI 556
Query: 545 NLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNT---- 600
+L+ + ++E + +P IG + F ++ + L+ +++ G+ NP +
Sbjct: 557 SLDRIMNCSKEDFMELPDIGPKIASSIAIFFSEQQNIDLLDKMKKNGL----NPESFEVN 612
Query: 601 --------------------------------KGGKVVNFISKNTNYLVKGQKPGKKLEK 628
GGKV+N IS N NYL+ G +PG K+ K
Sbjct: 613 TEVLPSLEGKTFVLTGKLKRFSRDEIRDYITKNGGKVLNTISSNVNYLLVGDEPGSKVAK 672
Query: 629 AIKL-NIKILDEKNFVKIVK 647
A + N+ I++E++F+ +V+
Sbjct: 673 AQQFPNLIIINEEDFMYLVE 692
>gi|392537179|ref|ZP_10284316.1| NAD-dependent DNA ligase [Pseudoalteromonas marina mano4]
Length = 672
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 264/668 (39%), Positives = 393/668 (58%), Gaps = 34/668 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S +S ++ L+ L +HN YY+ D P I D +YD+LL EL +E + PE L+ DS TQ
Sbjct: 3 SSISEQINHLRTLLEQHNYNYYVLDTPSIPDAEYDRLLRELSALETQNPEFLSADSPTQK 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + V H M+SLDN FS+++ FN+RI L T + + E K DG+AV
Sbjct: 63 VGGAALSKFEQVAHQVPMLSLDNAFSEDEFTGFNRRIKERLMSTDVLTFCCEPKLDGLAV 122
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
++ Y G L QA+TRGDG GENIT N+ I +PL L YP EL EVR EV + F
Sbjct: 123 SIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKEL-EVRGEVFMDSAGF 181
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN G K F NPRNAAAG LRQL+ KI + L F+A+ G + ++P H +
Sbjct: 182 EKLNNEAQKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIPEDHFQ 241
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
L GL +C E ++ G +++Y I +R L YEIDGVV K+N + Q++LG
Sbjct: 242 QLEKLTDWGLPLCPETKLVEGPQAALDYYDDILTRRSELKYEIDGVVIKVNKKALQERLG 301
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+AYKF ++E +T++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 302 FVARAPRWAIAYKFPAQEEVTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNG 361
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI R +++GDTV++ R+G+VIP+IT +L RP D++ P+ CPIC+S + +E
Sbjct: 362 DEIARLGVKVGDTVIIRRAGDVIPQITQVVLERRPTDARDIVFPSACPICDSHVEKVEGE 421
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC+G + C AQRK ++HF+SRKA++I GLG K++++LV+ ++ T DL+ +
Sbjct: 422 AVARCTGGLV-CPAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPADLFILKQG 480
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L+R+ K A N++ A+ ++K TT ++F+Y+LGIR GE TA+ LAN+F LE +
Sbjct: 481 HFESLERMGPKSAKNLVTALNEAKATTLAKFLYSLGIREAGEATAQNLANHFLTLENIIS 540
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------------- 594
A+ E L + +G F ++ + +++ L + G++W
Sbjct: 541 ASVESLTQVSDVGDIVASHVRGFFDEEHNLAVVNALIEQGVHWPALSAPSEDEQPLAGLT 600
Query: 595 ---------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
LN + K G KV +S T+ LV G+K G KL KA L I +L E
Sbjct: 601 YVLTGTLNTLNRNDAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDVLTE 660
Query: 640 KNFVKIVK 647
+ ++++K
Sbjct: 661 DDLIELLK 668
>gi|384085094|ref|ZP_09996269.1| DNA ligase, NAD-dependent [Acidithiobacillus thiooxidans ATCC
19377]
Length = 677
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 268/663 (40%), Positives = 394/663 (59%), Gaps = 37/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ +L+ +L N AYY D P +SD +YD LL EL+ +E +YP+ + DS +Q VG
Sbjct: 11 RIMQLRAQLSEANAAYYQKDAPTLSDPEYDVLLRELQALENRYPQWHSADSPSQRVGAAP 70
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ +H+ M SLDN F D + R+ L + + AE KFDG++VN+RYE
Sbjct: 71 LNHFAEIHYRVPMTSLDNVFDDAGFADWLVRVYKGLG-HEQVSMSAEPKFDGLSVNIRYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA TRGDG+ GE++T+N+ I +PL L K P +LEVR EV+I F +LN
Sbjct: 130 NGRLLQAGTRGDGSTGEDVTSNVRSIRNVPLQLKGKNWPNILEVRGEVVIPVAAFERLND 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP--SSHSELLN 254
R F NPRNAAAG LRQL+ ++ + L FF G GE+ N P +H E+L
Sbjct: 190 ERLRNHENPFANPRNAAAGSLRQLDSQVTAQRPLAFFPWGWGEV---NAPLAETHLEVLQ 246
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
G + S + ++ E+Y K+ R +P+EIDG+V+K+N L +++LGFT+
Sbjct: 247 QLAGWGFEVTSYLSKIDHLDDCREYYLKMQNLREQMPFEIDGLVFKVNDLHERERLGFTA 306
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+AYKF + E T ++ I +GRTG+ITPVA L+PV + G+T++RA+LHN+ E+
Sbjct: 307 RAPRWAIAYKFPAHEEKTVVEDILASVGRTGVITPVAQLRPVQVGGVTVSRASLHNQDEV 366
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
RK+I++GDTV+V R+G+VIP++ IL RP ++ ++IP+ CPIC S+++ + +
Sbjct: 367 DRKDIRVGDTVLVRRAGDVIPEVVMVILEARPEHTQPWQIPDHCPICGSEVLRLSNEAAH 426
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC G I C AQR + HF+SRKAM+I GLG+K+I +LV+ +V T D+Y +N L
Sbjct: 427 RCMGG-IYCPAQRVGAISHFASRKAMDIRGLGEKLITQLVDRELVKTVADIYSLNEDVLC 485
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
L+R++ K A N+L I S+ T RF+YALGIR VGETTAK LA +F +L+ + A E
Sbjct: 486 GLERMARKSAQNLLAEIAASRQTQLWRFLYALGIRQVGETTAKSLAEHFGDLDPLMAADE 545
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------- 594
QL NIP +G ++ F Q +R +I+ LR G++W
Sbjct: 546 AQLQNIPDVGPIVAESVQHFFAQSHNREVITALRTAGLHWEKVAPKSSGHLAGRIFVLTG 605
Query: 595 ----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
++ K G KV + +S T+Y+V G G K EKA KL I ++DE ++
Sbjct: 606 TLPQMSREEAKAAIEATGAKVSSSVSAKTDYVVLGADAGSKAEKAAKLGITVVDEAQLLE 665
Query: 645 IVK 647
++K
Sbjct: 666 LLK 668
>gi|359439432|ref|ZP_09229403.1| DNA ligase [Pseudoalteromonas sp. BSi20311]
gi|359446976|ref|ZP_09236603.1| DNA ligase [Pseudoalteromonas sp. BSi20439]
gi|358025908|dbj|GAA65652.1| DNA ligase [Pseudoalteromonas sp. BSi20311]
gi|358039113|dbj|GAA72852.1| DNA ligase [Pseudoalteromonas sp. BSi20439]
Length = 679
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 265/668 (39%), Positives = 391/668 (58%), Gaps = 33/668 (4%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S +S ++ L+ L +HN +YY+ D P I D +YD+LL L ++E +PE LT DS TQ
Sbjct: 9 SSISEQINHLRTTLEQHNYSYYVLDTPSIPDAEYDRLLRTLSELETHHPEFLTADSPTQK 68
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + V H M+SLDN F +++ FN+RI L T + + E K DG+AV
Sbjct: 69 VGGAALAKFEQVAHQVPMLSLDNAFGEDEFSGFNRRIKERLMSTDELTFCCEPKLDGLAV 128
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
++ Y G L QA+TRGDG GENIT N+ I +PL L P LEVR EV + F
Sbjct: 129 SIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDDYPRELEVRGEVFMDSAGF 188
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN G K F NPRNAAAG LRQL+ KI + L F+A+ G + +P H +
Sbjct: 189 DKLNAEAEKRGDKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGTLPEDHYQ 248
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
L GL +C E ++ G + +Y I +R L YEIDGVV K+N + Q++LG
Sbjct: 249 QLAKLTDWGLPLCPETKLVEGPKAALAYYNDILTRRSELKYEIDGVVIKVNKKALQERLG 308
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 309 FVARAPRWAIAYKFPAQEEITHLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNA 368
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI R +++GDTV++ R+G+VIP+IT +L RP+D+K P +CPIC+S + +E
Sbjct: 369 DEIARLGVKVGDTVIIRRAGDVIPQITQVVLEQRPSDAKEIVFPTMCPICDSHVERVEGE 428
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC+G + C AQRK ++HF+SRKA++I GLG K++++LV+ ++ T DL+ +
Sbjct: 429 AVARCTGGLV-CQAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPADLFILKQG 487
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L+R+ K A N++ A+ +K TT ++F+Y+LGIR VGE TA+ LAN+F LE +
Sbjct: 488 HFESLERMGPKSAKNLVAALDDAKTTTLAKFLYSLGIREVGEATAQNLANHFLTLENVID 547
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------------- 594
A+ EQL+ + +G K F + + ++++L G+ W
Sbjct: 548 ASIEQLIEVSDVGEIVAKHVRGFFTEEHNLTVVNELIAQGVNWPQLTAPSEQEQPLAGLT 607
Query: 595 ---------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
LN + K G KV +S T+ LV G+K G KL KA +L I+IL E
Sbjct: 608 YVLTGTLNTLNRNDAKARLQKLGAKVSGSVSAKTDALVAGEKAGSKLTKAQELGIEILTE 667
Query: 640 KNFVKIVK 647
+ + +++
Sbjct: 668 DDLITLLE 675
>gi|59712497|ref|YP_205273.1| NAD-dependent DNA ligase LigA [Vibrio fischeri ES114]
gi|75353581|sp|Q5E3L1.1|DNLJ_VIBF1 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|59480598|gb|AAW86385.1| DNA ligase, NAD(+)-dependent [Vibrio fischeri ES114]
Length = 668
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 268/664 (40%), Positives = 396/664 (59%), Gaps = 42/664 (6%)
Query: 20 ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGEN 79
ELK++L+ H YY+ D+P + D +YD+++ +L IE ++PEL+T DS +Q VG +
Sbjct: 9 ELKQQLNYHAYRYYVEDSPELPDAEYDRMMQQLLSIESEHPELVTVDSPSQRVGGEALDG 68
Query: 80 SKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIE-YIAELKFDGIAVNLRYEYG 138
+ H M+SLDN FSDE++ F KR+ + L ++K + + E K DG+AV+L Y G
Sbjct: 69 FTQIQHEIPMLSLDNAFSDEELEAFEKRMNDRL-ISKPVSLFCCEPKLDGLAVSLLYVDG 127
Query: 139 YLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYR 198
L QA TRGDG GENIT N+ I IPL L + P LEVR EV + K F LN+
Sbjct: 128 KLVQAGTRGDGTTGENITENVRTIRCIPLTLQGEGWPTRLEVRGEVFMPKAGFEALNERA 187
Query: 199 YHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQK 258
G K F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH + +
Sbjct: 188 LKRGEKPFANPRNAAAGSLRQLDSKITATRPLSFYAYSVGVIEGGELETSHYQRFVQLKS 247
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL +C E + ++ +YK I +R L YEIDGVV K++ ++ Q++LGF +RAPR
Sbjct: 248 WGLPMCEETKQCHSLTEVKAYYKDILERRDALKYEIDGVVIKVDDIALQEQLGFVARAPR 307
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 308 WAIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNADEIARLG 367
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
+ IGDTV++ R+G+VIP+I S + + RP DSK P CP+C S + +E + RC G
Sbjct: 368 VHIGDTVIIRRAGDVIPQIVSVVEARRPTDSKAIVYPIHCPVCGSNLERVEGEAVTRC-G 426
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
+ + C AQRK L+HF SRKA+++ GLG K++E+LV+ +V T DL+K++ L L+R
Sbjct: 427 AGLVCQAQRKEALKHFVSRKALDVDGLGDKVVEQLVDKEMVETPADLFKLSAGLLTVLER 486
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N++ A+ K+K TT RF+Y+LGIR VGE TA LA +F LE + AT EQL+
Sbjct: 487 MGPKSAQNVVDALNKAKATTLPRFLYSLGIREVGEATAANLAAHFYTLEAIQVATFEQLI 546
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------------- 601
+ +G K + F +P ++ +I L+++GI+W P K
Sbjct: 547 EVSDVGDIVAKHVLNFFAEPHNKTVIEDLQEMGIHW---PEIKALDESVPQPLAGKVVVL 603
Query: 602 -------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +SK T+ L G+ G KL KA +L +++++E+
Sbjct: 604 TGTLHKLKRNEAKAALQELGAKVTGSVSKKTDILFAGEAAGSKLAKAEELGVEVMNEEQL 663
Query: 643 VKIV 646
++++
Sbjct: 664 IELL 667
>gi|304312656|ref|YP_003812254.1| NAD-dependent DNA ligase [gamma proteobacterium HdN1]
gi|301798389|emb|CBL46613.1| DNA ligase, NAD-dependent [gamma proteobacterium HdN1]
Length = 677
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 256/673 (38%), Positives = 393/673 (58%), Gaps = 35/673 (5%)
Query: 9 INFSKLSFR--VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKD 66
+N S S R L+ +L HN YY+ D+P + D++YD+L L +E+ +P+L+T+D
Sbjct: 1 MNHSSASDREEAQALRAQLQEHNYRYYVLDDPSVPDSEYDRLFQRLLALEQAHPDLITQD 60
Query: 67 SLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKF 126
S TQ VG K V H M+SLDN F+ +++ F KRI + LK ++++ E K
Sbjct: 61 SPTQRVGAAPLAAFKQVQHRVPMLSLDNVFNAAELLAFEKRIHDRLKSEVPVDFVCEPKL 120
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+AV+L Y G Q +TRGDG GE+IT N+ + +PL L + P LEVR EV +
Sbjct: 121 DGLAVSLLYRDGLFVQGATRGDGETGEDITQNLRTLSTVPLRLMGEGFPSELEVRGEVYM 180
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
K +LN+ + G K F NPRNAAAG LRQL+P+I + L + +G+G + G +P
Sbjct: 181 PKAGLAELNQRQTSAGDKTFANPRNAAAGSLRQLDPRITAKRPLELYCYGIGHVAGGTLP 240
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
+ HS +L K G + E + + +Y + +R L Y+IDGVVYK++ L+
Sbjct: 241 ARHSAILAALGKWGFRVNPEIRSAANAAECQRYYDALLARRDALAYDIDGVVYKVDELAL 300
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q++LGF SRAPR+A+A+KF ++E +T++ + Q+GRTG +TPVA L+PV + G+T++ A
Sbjct: 301 QQRLGFVSRAPRWAIAHKFPAQEEITRLLDVEFQVGRTGAVTPVARLEPVYVGGVTVSNA 360
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKII 426
TLHN E+ R +I +GDTVVV R+G+VIP+I + RP + + +P CP+C S I
Sbjct: 361 TLHNMDEVARLDIHVGDTVVVLRAGDVIPRIVRVLPERRPPYAPVVMLPAACPVCGSAIT 420
Query: 427 YIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY 486
E +ARCSG C AQ K ++HFS+R+AM+I GLG K++++LV+ +V + DLY
Sbjct: 421 REEGEAVARCSGGLF-CPAQTKEAIKHFSARRAMDIDGLGDKIVDQLVDTGLVASVADLY 479
Query: 487 KINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546
+ +L L+R+ K A+ ++ AI KS+ TTF RF++ALGIR VGE TA+ LA +++ L
Sbjct: 480 SLASASLAALERMGEKSADKLVAAIAKSRNTTFQRFLFALGIREVGEATAQTLARHYETL 539
Query: 547 ECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL----------- 595
+ + +A E LL +P IG + + ++F QP +R ++ +L I+W
Sbjct: 540 DALLRADEASLLEVPDIGPVSARNIVQFFAQPHNREVLDRLLAAEIHWPAPVKADVSALP 599
Query: 596 ---------------------NNPNTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNI 634
++ G KV +SKNT + G+K G KL +A L I
Sbjct: 600 LSDQTLVLTGSLSQLSRDEAGDHLRALGAKVSGSVSKNTTAVYAGEKAGSKLARAESLGI 659
Query: 635 KILDEKNFVKIVK 647
+ E + +++
Sbjct: 660 PVYTEDELMSLLR 672
>gi|153001196|ref|YP_001366877.1| NAD-dependent DNA ligase [Shewanella baltica OS185]
gi|166216241|sp|A6WPS5.1|DNLJ_SHEB8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|151365814|gb|ABS08814.1| DNA ligase, NAD-dependent [Shewanella baltica OS185]
Length = 685
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 260/653 (39%), Positives = 393/653 (60%), Gaps = 38/653 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L + L+ HNI YY+ D P I+D++YD+L+ L K+E YP L+ DS TQ VG +
Sbjct: 26 LSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVADSPTQRVGGLALAKF 85
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ H M+SLDN F + D F+KR+T+++ + + E K DG+AV++ Y +G L
Sbjct: 86 DQITHLKPMLSLDNAFDEADFSAFHKRVTDKVG---EVSFCCEPKLDGLAVSILYRHGVL 142
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
++A+TRGDG++GE+IT N+ I IPL L PEL+EVR E + K F LN
Sbjct: 143 ERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVRGEAFMPKAAFEALNDRARA 202
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP--SSHSELLNWYQK 258
K F NPRNAAAG LRQL+ KI + L F+A+ +G + + P +H E L +
Sbjct: 203 KDEKLFVNPRNAAAGSLRQLDSKITAARSLAFYAYALGVVEPDSHPLAKTHFEQLQQLKS 262
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL I E V + ++++ ++YK I +R +L +EIDGVV K+N ++ Q++LGF +++PR
Sbjct: 263 WGLPISSEIKVCAELSQVYDYYKNILTRRSDLAFEIDGVVMKVNDIAQQQRLGFVAKSPR 322
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E +T ++ ++ Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R
Sbjct: 323 WAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIARLG 382
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
I++GDTV++ R+G+VIP+I + + RP + P+ CP+C S + +E +ARCSG
Sbjct: 383 IKVGDTVIIRRAGDVIPQIVAIVPERRPETATDIVFPHNCPVCGSLVERLEGEAVARCSG 442
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+K+ + LDR
Sbjct: 443 GLF-CEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVQSPADLFKLTASMMTMLDR 501
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N+ AI+ +K TT +RF+YALGIR VGE TA LA +F +L+ + AT EQL
Sbjct: 502 MGMKSATNLAAAIEAAKTTTLARFLYALGIREVGEATAANLAAHFASLDALRVATVEQLT 561
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------ 594
+ +G+ + F QP + +I L G++W
Sbjct: 562 EVEDVGAVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSADAQPLKGQTWVLTGTL 621
Query: 595 --LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
LN + K G KV +SKNT+ LV G+ G KL KA +L +K++DE
Sbjct: 622 NQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDE 674
>gi|451811608|ref|YP_007448063.1| DNA ligase (NAD+) [Candidatus Kinetoplastibacterium crithidii
TCC036E]
gi|451776766|gb|AGF47765.1| DNA ligase (NAD+) [Candidatus Kinetoplastibacterium crithidii
TCC036E]
Length = 702
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 272/680 (40%), Positives = 419/680 (61%), Gaps = 56/680 (8%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ L+KE+ HNI Y+ YD+P+ISD +YD L+ +L K+E +P+L+ +S TQ VG
Sbjct: 27 ILSLRKEIDFHNINYHCYDDPLISDAQYDALVDKLVKLELLHPDLIDPNSPTQRVGSSPL 86
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRI------TNELKLTKNIEYIAELKFDGIAV 131
+ H M+SL N F D+DV+ F+ R+ N + +++ Y +LKFDG+A+
Sbjct: 87 PYFNQIEHEVPMLSLSNAFKDDDVVSFDARVKKLLYDNNLVSPKEDVCYFCDLKFDGLAI 146
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
N+RYE G L ASTRGDGN+GE++T+NI I +PL+L+ P++LEVR EV + DF
Sbjct: 147 NIRYEKGLLVSASTRGDGNVGEDVTSNIRTIKSVPLILH-GVVPDILEVRGEVFMRHDDF 205
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSS--- 248
+LN ++ G K F N RNAAAG LR L+P++ ++ L FFA+G G ++ + +
Sbjct: 206 ERLNNHQRMNGDKLFMNTRNAAAGSLRNLDPRVTASRNLKFFAYGCGNIQNIFQEENFII 265
Query: 249 ---HSELLNWYQKIGLSICGEYS-VLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCL 304
HS ++NW IG + Y +++ + ++ FY+KIN R +LPY+IDGVVYK+N L
Sbjct: 266 SNYHSSVINWLSSIGFPVNKTYQEIVNSCSGMLNFYEKINNIRNSLPYDIDGVVYKVNSL 325
Query: 305 STQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITIT 364
QK LG++SRAPRFALA+KF +EA+TK+ +I++Q+GRTG ITPVA L PVLI G I+
Sbjct: 326 VFQKTLGYSSRAPRFALAHKFSPEEAVTKLLSIDVQVGRTGAITPVARLDPVLISGANIS 385
Query: 365 RATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSK 424
ATLHNE+EI RK+++IGD V + R+G+VIP++ + LR N IF +P+ CPICNS
Sbjct: 386 SATLHNENEIIRKDLRIGDFVRIRRAGDVIPEVIEVVKELRSNVVSIFNMPHYCPICNSL 445
Query: 425 IIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVD 484
+ I+ + RC+G C AQ K L H RKA+NIIG G+ +I KLV++N + + D
Sbjct: 446 LRRIDGESVTRCTGGLF-CSAQLKQRLLHAVGRKALNIIGFGESLIYKLVDSNRIKSLAD 504
Query: 485 LYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFK 544
+Y +N ++LL ++++ K ANNI+ +I +S+ RF+++LGIRHVG++TA +A+ F
Sbjct: 505 IYSLNIEDLLDIEKIGPKSANNIMESIDRSRSPKLDRFLFSLGIRHVGDSTANTIASKFI 564
Query: 545 NLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNT---- 600
+L+ + ++E + +P IG + F ++ + L+ +++ G+ NP +
Sbjct: 565 SLDRIMNCSKEDFMELPDIGPKIASSIAIFFSEQQNIDLLDKMKKNGL----NPESFEVN 620
Query: 601 --------------------------------KGGKVVNFISKNTNYLVKGQKPGKKLEK 628
GGKV+N IS N NYL+ G +PG K+ K
Sbjct: 621 TEVLPSLEGKTFVLTGKLKRFSRDEIRDYITKNGGKVLNTISSNVNYLLVGDEPGSKVAK 680
Query: 629 AIKL-NIKILDEKNFVKIVK 647
A + N+ I++E++F+ +V+
Sbjct: 681 AQQFPNLIIINEEDFMYLVE 700
>gi|338536758|ref|YP_004670092.1| NAD-dependent DNA ligase [Myxococcus fulvus HW-1]
gi|337262854|gb|AEI69014.1| NAD-dependent DNA ligase [Myxococcus fulvus HW-1]
Length = 672
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 271/674 (40%), Positives = 395/674 (58%), Gaps = 43/674 (6%)
Query: 10 NFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLT 69
+F + R EL +EL HN YY+ D+P +SD +YD+L+ EL+ +E ++P L T DS T
Sbjct: 3 DFQNAAARARELHRELAHHNYRYYVLDSPEVSDAQYDKLMRELQDLEARHPSLQTPDSPT 62
Query: 70 QHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGI 129
Q VG E V H M+SL N F D+ +I F++RI L L I Y+ E K DG+
Sbjct: 63 QRVGGAAAEAFGEVVHRAPMLSLANLFEDQGLIEFDERIRKLLGLPA-ISYVCEPKLDGL 121
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYP------PELLEVRCE 183
A+ LRYE G Q +TRGDG GE++T N+ I +P+ L +P PE+LEVR E
Sbjct: 122 AIALRYEKGAFVQGATRGDGTTGEDVTANLRTIRSLPMSL---FPQDGVKVPEVLEVRGE 178
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
V I KKDF KLN+ R G F NPRNAAAG LRQL+P++ + L F + G+
Sbjct: 179 VFIRKKDFQKLNEKREEEGEPLFANPRNAAAGSLRQLDPRMTAARPLSVFLYECVPGEGV 238
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
+H E L + + +GL I +Y G+ + E Y R LP+E+DG+V K++
Sbjct: 239 PAFKTHIEKLEYLKTLGLPI-NQYRRAEGLEGVREAYDASLKGRHELPFEVDGMVVKVDD 297
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
+K+LG S++PR+A+AYKF +E T++ I IQ+GRTG +TPVA LKPV + G+T+
Sbjct: 298 EDQRKRLGQVSKSPRWAVAYKFPPEEESTEVLDIGIQVGRTGALTPVAHLKPVKVGGVTV 357
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
RATLHNE E+ RK+++ GDTV V R+G+VIP+I S +LS RP+DS F+ P CP+C++
Sbjct: 358 ARATLHNEDELRRKDVRKGDTVFVRRAGDVIPEIVSVVLSRRPSDSAPFEFPRHCPVCHA 417
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
E I RC+G+ C AQ ++HF+SR AM+I GLG K+ +LV+ V T
Sbjct: 418 VATKDEDGAIIRCTGA--SCPAQLVEKIRHFASRLAMDIEGLGDKLATQLVSTGSVKTFA 475
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DLY + + LL L+R+ +K A+N++ A+++SK TT RF+YALGIRHVG+ TAK LA F
Sbjct: 476 DLYALTKEKLLTLERMGDKSADNLVAALERSKQTTQRRFLYALGIRHVGDATAKALAEAF 535
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIY------WLNN 597
E +F A+ E + + +G + F +P ++ I L G+
Sbjct: 536 PQAEKLFGASLEDISRVKDVGPIMAQVIHTFFQEPQNQEAIRALLAAGVQPAAPQVATGG 595
Query: 598 P------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLN 633
P +GGKV +S+ T+++V G+ G KL+KA +L
Sbjct: 596 PFVGKSVVLTGAMTGMTREQAKEEVERRGGKVAGSVSRKTDFVVAGEDAGSKLKKAQELG 655
Query: 634 IKILDEKNFVKIVK 647
++ILDE+ F+++++
Sbjct: 656 VRILDEQAFLQMLQ 669
>gi|373950015|ref|ZP_09609976.1| DNA ligase [Shewanella baltica OS183]
gi|386324152|ref|YP_006020269.1| DNA ligase [Shewanella baltica BA175]
gi|333818297|gb|AEG10963.1| DNA ligase [Shewanella baltica BA175]
gi|373886615|gb|EHQ15507.1| DNA ligase [Shewanella baltica OS183]
Length = 685
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 259/653 (39%), Positives = 393/653 (60%), Gaps = 38/653 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L + L+ HNI YY+ D P I+D++YD+L+ L K+E YP L+ DS TQ VG +
Sbjct: 26 LSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVADSPTQRVGGLALAKF 85
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ H M+SLDN F + D F+KR+T+++ + + E K DG+AV++ Y +G L
Sbjct: 86 DQITHPKPMLSLDNAFDEADFSAFHKRVTDKVG---EVSFCCEPKLDGLAVSILYRHGVL 142
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
++A+TRGDG++GE+IT N+ I IPL L PEL+EVR E + K F LN
Sbjct: 143 ERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVRGEAFMPKAAFEALNDRARA 202
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP--SSHSELLNWYQK 258
K F NPRNAAAG LRQL+ KI + L F+A+ +G + + P +H E L +
Sbjct: 203 KDEKLFVNPRNAAAGSLRQLDSKITAARSLAFYAYALGVVEPDSHPLAKTHFEQLQQLKS 262
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL + E V + ++++ ++YK I +R +L +EIDGVV K+N + Q++LGF +++PR
Sbjct: 263 WGLPVSSEIKVCAELSQVYDYYKDILTRRGDLAFEIDGVVMKVNDIDQQQRLGFVAKSPR 322
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E +T ++ ++ Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R
Sbjct: 323 WAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIARLG 382
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
I++GDTV++ R+G+VIP+I + + RP + P+ CP+C S + +E ++ARCSG
Sbjct: 383 IKVGDTVIIRRAGDVIPQIVAIVPERRPETATDIVFPHNCPVCGSLVERLEGEVVARCSG 442
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+K+ + LDR
Sbjct: 443 GLF-CEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVQSPADLFKLTASMMTMLDR 501
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N+ AI+ +K TT +RF+YALGIR VGE TA LA +F +L+ + AT EQL
Sbjct: 502 MGMKSATNLAAAIEAAKTTTLARFLYALGIREVGEATAANLAAHFASLDALRVATVEQLT 561
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------ 594
+ +G+ + F QP + +I L G++W
Sbjct: 562 EVEDVGTVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSAEAQPLKGQTWVLTGTL 621
Query: 595 --LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
LN + K G KV +SKNT+ LV G+ G KL KA +L +K++DE
Sbjct: 622 NQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDE 674
>gi|225025741|ref|ZP_03714933.1| hypothetical protein EIKCOROL_02645 [Eikenella corrodens ATCC
23834]
gi|224941522|gb|EEG22731.1| hypothetical protein EIKCOROL_02645 [Eikenella corrodens ATCC
23834]
Length = 778
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 256/598 (42%), Positives = 373/598 (62%), Gaps = 29/598 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ L + L+R+ YY D P + D +YD+L EL+ +E ++P+ +S TQ VG
Sbjct: 7 RIRTLVQTLNRYAHEYYTLDAPSVPDAEYDRLYRELEALEAEHPQFRLPESPTQRVGGAV 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDED----------VIIFNKRITNELKLTKNIEYIAELKF 126
+ + V H M+SL+N FS D + F++R+ EL + + +EY AE KF
Sbjct: 67 LDGFETVVHAVPMLSLNNAFSPRDDETGAFDHAEFLAFDERVCKELGVAQ-VEYAAEPKF 125
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+AV+L Y+ G L QA+TRGDG GEN+T NI + IPL L+ + P LLEVR EVL+
Sbjct: 126 DGLAVSLLYQNGILVQAATRGDGTTGENVTENIKTVRNIPLRLHGEKQPALLEVRGEVLM 185
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-M 245
K DF LN+ + G K F NPRNAAAG LRQL+ KI + LHFFA+G+ +L G+ +
Sbjct: 186 LKADFAALNQRQLEAGQKPFANPRNAAAGSLRQLDSKITAQRKLHFFAYGIAQLSGVERL 245
Query: 246 PSSHSELLNWYQKIGLSIC-GEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCL 304
P SH E L +IG S+ G + +G ++ Y+++ R LPYEIDG+V K+N L
Sbjct: 246 PESHMEELALLHEIGFSLPKGYFGAYTGAAAVLREYERLAEHRPRLPYEIDGMVVKVNSL 305
Query: 305 STQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITIT 364
+ Q++LGF SRAPR+A+A+KF ++EALT ++AI++Q+GRTG +TPVA L PV + G+T+T
Sbjct: 306 AEQQQLGFVSRAPRWAIAHKFPAEEALTTVEAIDVQVGRTGAVTPVARLAPVFVGGVTVT 365
Query: 365 RATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDS------------KIF 412
ATLHN+ E+ RK++++GDTVVV R+G+VIP++ +L RP + F
Sbjct: 366 NATLHNQDEVARKDVRVGDTVVVRRAGDVIPEVVRVLLERRPMQPVDLLGEQMEPLHEPF 425
Query: 413 KIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEK 472
++P CP+C S + +ARC+G + C AQR GL HF+SRKAM+I GLG K IE
Sbjct: 426 RLPETCPVCGSAVEREAGEAVARCTGGML-CQAQRAQGLIHFASRKAMDIAGLGDKQIEA 484
Query: 473 LVNANIVVTAVDLYKINFKNLLRL---DRVSNKLANNILLAIQKSKLTTFSRFIYALGIR 529
LV A+++ + D+Y+++ L + + K A NIL +I +S+ +RF++ALGIR
Sbjct: 485 LVAADVLHSFADIYRLDIAKLQTIKDGKSAATKWAQNILDSIAQSRTPPLARFLFALGIR 544
Query: 530 HVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQL 587
HVGE+TAK+LA F NL+ + +A E L +P IGS A + QP + ++ L
Sbjct: 545 HVGESTAKQLAAAFGNLDTVRRAPEPILACLPDIGSVVAHAIAHYFRQPAQQKMLDDL 602
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 599 NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
GGKV +SK T+++V G+ G KLEKA L + +L E+ + ++
Sbjct: 729 EAAGGKVSGSVSKKTDFVVAGEAAGSKLEKAQALGVAVLSEEELLGML 776
>gi|85059656|ref|YP_455358.1| NAD-dependent DNA ligase LigA [Sodalis glossinidius str.
'morsitans']
gi|123766419|sp|Q2NSC2.1|DNLJ_SODGM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|84780176|dbj|BAE74953.1| DNA ligase [Sodalis glossinidius str. 'morsitans']
Length = 678
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 257/663 (38%), Positives = 391/663 (58%), Gaps = 38/663 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+K+L YY+ P + D++YD+ + EL+ +E + P+LLT DS +Q VG +
Sbjct: 11 LRKQLRHWEYLYYVEAAPEVPDSEYDRFMAELRTLEAERPDLLTADSPSQRVGGQAQSSF 70
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
V H M+SLDN F + + F+KR+ + LK ++ Y ELK DG+AV+L YE G L
Sbjct: 71 GQVRHEVPMLSLDNVFEEPGFLAFDKRVRDRLKRDDDMTYCCELKLDGLAVSLLYENGEL 130
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVL-NIKYPPELLEVRCEVLIYKKDFIKLNKYRY 199
+A+TRGDG GE+IT N+ I IPL L + P LLE+R EV + + F++LN+
Sbjct: 131 VRAATRGDGATGEDITANVRTIRTIPLRLQDHDNLPRLLEIRGEVFMSEAGFLRLNETAK 190
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKI 259
G K F NPRNAAAG LRQL+P I + L F+ +GVG L +P SH E L ++
Sbjct: 191 REGSKVFANPRNAAAGSLRQLDPSITARRPLTFYCYGVGLLEDGELPESHWERLQQFKAW 250
Query: 260 GLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRF 319
G+ + +G +++FY++++ R +L ++IDGVV K++ L+ Q++LGF +RAPR+
Sbjct: 251 GVPVSDRVRRCTGSAAVLDFYRQVHEARLSLGFDIDGVVIKVDSLALQQRLGFVARAPRW 310
Query: 320 ALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNI 379
A+AYKF ++E LT+++ + Q+GRTG ITPVA L+PVL+ G ++ ATLHN E+ R +
Sbjct: 311 AIAYKFPAQEQLTRVRDVEFQVGRTGAITPVARLEPVLVSGAMVSNATLHNADEVERLGL 370
Query: 380 QIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGS 439
IGDTV+V R+G+VIP+I + S RP + + P CP+C+S + +E + RC+
Sbjct: 371 MIGDTVIVRRAGDVIPQIVGVVTSERPAEVRPVAFPTQCPVCSSDVERVEGEAVLRCTAG 430
Query: 440 WIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRV 499
+ C AQRK L+HF SR+AM+I G+G K+I++LV +V T DL+++N + L RLDR+
Sbjct: 431 LV-CAAQRKEALKHFVSRRAMDIDGMGDKIIDQLVERELVKTPADLFRLNKEILTRLDRM 489
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
+K A N+L A++K++ TTF+RF+YALGIR VGE TA LA + L+ + A + L
Sbjct: 490 GSKSAQNLLEALEKARQTTFARFLYALGIREVGEATAVNLAAAYGTLDALIAADIDSLTG 549
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRD--VGIYW----------LNNPNTK------ 601
+ IG+ F + + +I L +GI W +NP
Sbjct: 550 VQDIGNIVATHVRHFFEETHNIEVIQDLLSPAIGIRWPEPVAAPVAASDNPFAGKTIVLT 609
Query: 602 ------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G +V +S T+ L+ G+ G KL KA +LNI ++DE +
Sbjct: 610 GSLSSLSRDEAKDHLVALGARVSGSVSAKTDLLIAGEAAGSKLSKAQQLNIPVMDEAEMM 669
Query: 644 KIV 646
+++
Sbjct: 670 RLL 672
>gi|386314137|ref|YP_006010302.1| NAD-dependent DNA ligase [Shewanella putrefaciens 200]
gi|319426762|gb|ADV54836.1| DNA ligase, NAD-dependent [Shewanella putrefaciens 200]
Length = 685
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 259/659 (39%), Positives = 397/659 (60%), Gaps = 38/659 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L + L+ HNI YY+ D P I+D++YD+L+ L K+E ++P+ + DS TQ VG +
Sbjct: 26 LSQSLNEHNIRYYVDDAPSITDSEYDRLMQCLIKLEAQFPQFIVADSPTQRVGGLALVKF 85
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ H M+SLDN F + D F+KR+T+++ + + E K DG+AV++ Y +G L
Sbjct: 86 DQITHLKPMLSLDNAFGEADFSAFHKRVTDKVG---EVSFCCEPKLDGLAVSILYRHGVL 142
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
++A+TRGDG +GE+IT N+ I IPL L PE++EVR E + K F LN+
Sbjct: 143 ERAATRGDGTVGEDITENVKTIKSIPLKLRGNDFPEVVEVRGEAFMPKAAFEALNERARA 202
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPSSHSELLNWYQK 258
K F NPRNAAAG LRQL+ KI ++ L F+A+ +G E ++ +H E L +
Sbjct: 203 KDEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPDSYSLGKTHYEQLQQLKS 262
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL + E V ++++ ++YK I +R +LP+EIDGVV K+N ++ Q++LGF +++PR
Sbjct: 263 WGLPVSNEIKVCEELDQVFDYYKDILTRRSDLPFEIDGVVMKVNDIAQQQRLGFVAKSPR 322
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E +T ++ ++ Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R
Sbjct: 323 WAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIERLG 382
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
I+IGDTV++ R+G+VIP+I + + RP + P+ CP+C S + +E +ARCSG
Sbjct: 383 IKIGDTVIIRRAGDVIPQIVAIVPERRPETATDIVFPHNCPVCGSLVERLEGEAVARCSG 442
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+K+ + LDR
Sbjct: 443 GLF-CEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVQSPADLFKLTASMMTMLDR 501
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N+ AI+ +K TT +RF+YALGIR VGE TA LA +F +L+ + AT EQL
Sbjct: 502 MGMKSATNLAAAIEAAKTTTLARFLYALGIREVGEATAANLAAHFASLDALRVATVEQLT 561
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-----------------------L 595
+ +G + F QP + +I L G++W L
Sbjct: 562 AVEDVGVVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSADAQPLKGQTWVLTGTL 621
Query: 596 NNPN---------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
N N T G KV +SKNT+ LV G+ G KL KA +L +K++DE+ + +
Sbjct: 622 NQLNRNDAKAQLQTLGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIDEEALLAL 680
>gi|310823543|ref|YP_003955901.1| DNA ligase [Stigmatella aurantiaca DW4/3-1]
gi|309396615|gb|ADO74074.1| DNA ligase [Stigmatella aurantiaca DW4/3-1]
Length = 673
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 263/674 (39%), Positives = 397/674 (58%), Gaps = 39/674 (5%)
Query: 9 INFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSL 68
++ R +L++EL HN YY+ D+P +SD +YD+L+ EL+ +E ++P L T DS
Sbjct: 1 MDLKTAETRARDLRRELAHHNHRYYVLDSPEVSDAEYDRLMRELQGLEAQFPALATPDSP 60
Query: 69 TQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDG 128
TQ VG E V H M+SL N F+DE+ F++RI ++ ++ Y+ E K DG
Sbjct: 61 TQRVGGEAAEKFAKVVHRAPMLSLANVFNDEEFTEFDERI-RKVVGPADVTYVCEPKLDG 119
Query: 129 IAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVL----NIKYPPELLEVRCEV 184
+A+ LRYE G Q +TRGDG GE++T N+ + +PL L + PP +LEVR EV
Sbjct: 120 LAITLRYENGRFLQGATRGDGTTGEDVTGNLRTVRPLPLELLPEAGMAVPP-VLEVRGEV 178
Query: 185 LIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN 244
I K+DF KLN+ R G F NPRNAAAG LRQL+PKI ++ L + + G+
Sbjct: 179 FIRKEDFKKLNEKREEEGEALFANPRNAAAGSLRQLDPKITASRPLSVSLYEIVPTEGVP 238
Query: 245 MPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCL 304
+H+ L + QK+GL + + G+ + Y+ R L +E+DG+V K++
Sbjct: 239 AFDTHTAKLEYLQKLGLPV-NHHERAQGLEGVRAAYQAALKGRHALKFEVDGMVVKVDSE 297
Query: 305 STQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITIT 364
+++LG S++PR+A+AYKF +E T+++AI +Q+GRTG +TPVA LKPV + G+T++
Sbjct: 298 DQRRRLGQVSKSPRWAVAYKFPPEEESTRVEAIEVQVGRTGALTPVAHLKPVKVGGVTVS 357
Query: 365 RATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSK 424
RATLHNE E+ RK+++ GDTV V R+G+VIP+I S + + RP DSK ++ P CP+C ++
Sbjct: 358 RATLHNEDELRRKDVRQGDTVFVRRAGDVIPEIVSVVPNQRPADSKPYEFPQHCPVCGAQ 417
Query: 425 IIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVD 484
+ E I RC+G+ C AQ ++HF+SR AM+I G+G K+ +LV + V T D
Sbjct: 418 AVKDEEGAIIRCTGA--SCPAQLVEKVRHFASRPAMDIDGVGDKLAAQLVASGRVKTFAD 475
Query: 485 LYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFK 544
LY + + LL L+R+ K A+N+L AI++SK TT RF+YALGIRHVGE TAK LA F
Sbjct: 476 LYALTREQLLSLERMGEKSADNLLAAIERSKQTTQRRFLYALGIRHVGEATAKALAEAFP 535
Query: 545 NLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL------NNP 598
++ A E L + +G T + F +P +R I L G+ P
Sbjct: 536 EAPLLYTADMEALTRVKDVGPTMAQVLHAFFQEPQNRAAIDALLAAGVTPAPPQVNTGGP 595
Query: 599 ------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNI 634
+GGKV +S+ T+++V G+ G KL+KA +L +
Sbjct: 596 FAGKTVVLTGGMTGMSRDQAKEEIERRGGKVSGSVSRKTDFVVAGEDAGSKLKKAQELGV 655
Query: 635 KILDEKNFVKIVKG 648
++LDE+ F+K+++G
Sbjct: 656 RVLDEQAFLKLLQG 669
>gi|261253653|ref|ZP_05946226.1| DNA ligase [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|417954253|ref|ZP_12597291.1| NAD-dependent DNA ligase LigA [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260937044|gb|EEX93033.1| DNA ligase [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342815741|gb|EGU50652.1| NAD-dependent DNA ligase LigA [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 669
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 266/668 (39%), Positives = 397/668 (59%), Gaps = 34/668 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+++ ++ +L++ LH H + YY+ DNP I D +YD+L+ +L ++E ++PEL++ DS +Q
Sbjct: 3 TEIQEKLNQLRETLHYHGVKYYVEDNPEIPDAEYDRLMRDLMELESQHPELMSIDSPSQR 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + V H M+SLDN F D ++ F+KR+ + + + E K DG+AV
Sbjct: 63 VGGAPLDGFGSVKHEIPMLSLDNAFDDGELESFHKRMKDRIPSATFDVFCCEPKLDGLAV 122
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L QA+TRGDG GENIT N+ I IPL L + P +EVR EV + K F
Sbjct: 123 SLLYENGVLVQAATRGDGATGENITENVRTIKAIPLKLQGEGWPARIEVRGEVFMPKAGF 182
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN+ G K F NPRNAAAG LRQL+ +I + L F+A+ VG + G + SSH +
Sbjct: 183 DKLNELALKKGDKVFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVEGAELSSSHYQ 242
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
+ GL +C E +S ++ + +Y+ I +R +L YEIDGVV K++ ++ Q++LG
Sbjct: 243 RFLQLKGWGLPMCPETKQVSSLDDVKAYYQDILERRESLTYEIDGVVIKVDNIALQEQLG 302
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+AYKF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 303 FVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNA 362
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI R + +GDTVV+ R+G+VIP+I S + RP +++ P CP+C S++ +E
Sbjct: 363 DEIERLGVMVGDTVVIRRAGDVIPQIVSVVSERRPENAREIVFPENCPVCKSQVERVEGE 422
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARCSG + C AQRK L+HF SRKA+++ GLG+K+IE+LV+ +V T DL+K++
Sbjct: 423 AVARCSGGLV-CQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDREMVETPADLFKLSAG 481
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ LDR+ K A N++ A+ KSK TT RF+Y+LGIR VGE TA LA +FK L+ +
Sbjct: 482 VITVLDRMGPKSAQNVVDALNKSKETTLPRFLYSLGIREVGEATAANLAQHFKTLDAVKI 541
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------------- 594
A E L+ + IG I F Q + +I L G++W
Sbjct: 542 ANHEALVEVQDIGEIVASHIIAFFAQDKNLTVIDDLILQGVHWSDVEEKDESTPQPLAGK 601
Query: 595 ----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
L + K G KV +SK T+ L G+ G KL KA +L I+I
Sbjct: 602 TVVLTGSLSQLTRSDAKAALQNLGAKVTGSVSKKTDILFAGENAGSKLAKAQELGIEIRT 661
Query: 639 EKNFVKIV 646
E++ + ++
Sbjct: 662 EEDLISLM 669
>gi|217972882|ref|YP_002357633.1| NAD-dependent DNA ligase [Shewanella baltica OS223]
gi|254781416|sp|B8EEK5.1|DNLJ_SHEB2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|217498017|gb|ACK46210.1| DNA ligase, NAD-dependent [Shewanella baltica OS223]
Length = 685
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 259/653 (39%), Positives = 393/653 (60%), Gaps = 38/653 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L + L+ HNI YY+ D P I+D++YD+L+ L K+E YP L+ DS TQ VG +
Sbjct: 26 LSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEALYPHLIVADSPTQRVGGLALAKF 85
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ H M+SLDN F + D F+KR+T+++ + + E K DG+AV++ Y +G L
Sbjct: 86 DQITHLKPMLSLDNAFDEADFSAFHKRVTDKVG---EVSFCCEPKLDGLAVSILYRHGVL 142
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
++A+TRGDG++GE+IT N+ I IPL L PEL+EVR E + K F LN
Sbjct: 143 ERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELVEVRGEAFMPKAAFEALNDRARA 202
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP--SSHSELLNWYQK 258
K F NPRNAAAG LRQL+ KI + L F+A+ +G + + P +H E L +
Sbjct: 203 KDEKLFVNPRNAAAGSLRQLDSKITAARSLAFYAYALGVVEPDSHPLAKTHFEQLQQLKS 262
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL + E V + ++++ ++YK I +R +L +EIDGVV K+N + Q++LGF +++PR
Sbjct: 263 WGLPVSSEIKVCAELSQVYDYYKDILTRRSDLAFEIDGVVMKVNDIDQQQRLGFVAKSPR 322
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E +T ++ ++ Q+GRTG +TPVA LKPV + G+T++ ATLHN +EI R
Sbjct: 323 WAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNANEIARLG 382
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
I++GDTV++ R+G+VIP+I + + RP + P+ CP+C S + +E +ARCSG
Sbjct: 383 IKVGDTVIIRRAGDVIPQIVAIVPERRPETATDIVFPHNCPVCGSLVERLEGEAVARCSG 442
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+K+ + LDR
Sbjct: 443 GLF-CEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVQSPADLFKLTASMMTMLDR 501
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N+ AI+ +K TT +RF+YALGIR VGE TA LA +F +L+ + AT EQL
Sbjct: 502 MGMKSATNLAAAIEAAKTTTLARFLYALGIREVGEATAANLAAHFASLDALRVATVEQLT 561
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------ 594
+ +G+ + F QP + +I L G++W
Sbjct: 562 EVEDVGAVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSAEAQPLKGQTWVLTGTL 621
Query: 595 --LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
LN + K G KV +SKNT+ LV G+ G KL KA +L +K++DE
Sbjct: 622 NQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVMDE 674
>gi|254427631|ref|ZP_05041338.1| DNA ligase, NAD-dependent [Alcanivorax sp. DG881]
gi|196193800|gb|EDX88759.1| DNA ligase, NAD-dependent [Alcanivorax sp. DG881]
Length = 776
Score = 510 bits (1313), Expect = e-141, Method: Compositional matrix adjust.
Identities = 253/631 (40%), Positives = 392/631 (62%), Gaps = 11/631 (1%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+ +L+ + YY+ D+P + D +YD+ ELK +E +YP+L+T DS TQ VG V +
Sbjct: 13 LRDQLNDWSYRYYVQDDPAVPDAEYDRAFRELKDLEAQYPDLITADSPTQRVGDVPLDAF 72
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ V H M+SLDN F D+D+ F+KRI L + + ++Y+AE K DG+A++L Y G L
Sbjct: 73 EQVQHEVPMLSLDNAFDDDDLRAFDKRIRERLGVDETVDYVAEPKLDGLAISLLYLDGQL 132
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
+A+TRGDG GENIT N I +PL L P LEVR EV++ F LN +
Sbjct: 133 VRAATRGDGQTGENITVNARTIRSVPLTLRGSQVPSRLEVRGEVVMPHAGFAALNARQEA 192
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIG 260
K F NPRNAAAG LRQL+ +I ++ L F+A+ + +L G+ P++H+++L + G
Sbjct: 193 AEQKVFANPRNAAAGSLRQLDSRITASRPLEFYAYSMAQLEGVPEPATHADMLEALRSWG 252
Query: 261 LSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFA 320
L + E V +GV+ L+ FY+ I KR +L Y+IDGVVYK++ Q+ LGF SRAPR+A
Sbjct: 253 LRVNPEVRVCAGVDALLAFYQGILEKRDHLDYDIDGVVYKVDRFDWQQDLGFVSRAPRWA 312
Query: 321 LAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQ 380
+A+KF ++E LT + ++ Q+GRTG +TPVA L+PV + G+ ++ ATLHN EI R +I+
Sbjct: 313 IAHKFPAQEELTVLNGVDWQVGRTGALTPVARLEPVHVGGVIVSNATLHNIDEIQRLDIR 372
Query: 381 IGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSW 440
IGDTVVV+R+G+VIPK+ ++ RP D++ +P CP+C S I+ + ++ARC+G
Sbjct: 373 IGDTVVVYRAGDVIPKVVRALPERRPADARDIALPPSCPVCGSDILRGDDQVVARCTGGL 432
Query: 441 IECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS 500
I C AQ++ ++HF+SR+AM+I GLG K+++ LV+ ++ T DLY++ + + L+R+
Sbjct: 433 I-CGAQQREAIKHFASRRAMDIDGLGDKLVDALVDQELIATVADLYRLKAEQVAGLERMG 491
Query: 501 NKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNI 560
K A+N++ A++ SK RF++ALGI +GE TAK LA+ F +LE + +A LL +
Sbjct: 492 EKSADNLIAALETSKTVGLGRFLFALGILQIGEETAKNLADCFGDLEGIRRAPLLLLLAV 551
Query: 561 PKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGGKVVNFISKNTNYLVKGQ 620
P +G KA F + + ++I L G+ NP G F+ N+ L +
Sbjct: 552 PDVGMEVAKAIGAFFAEADNEVVIDGLLAEGV----NPQASGVPSAAFV--NSLTLAQLL 605
Query: 621 KPGKKLEKAIKLNIKILDEKNFVKIVKGFST 651
K K+L +N++ + +K+ + F T
Sbjct: 606 KSAKRL----GMNLEGIGDKSLETLGGHFRT 632
>gi|343516772|ref|ZP_08753799.1| NAD-dependent DNA ligase LigA [Vibrio sp. N418]
gi|342795420|gb|EGU31144.1| NAD-dependent DNA ligase LigA [Vibrio sp. N418]
Length = 669
Score = 510 bits (1313), Expect = e-141, Method: Compositional matrix adjust.
Identities = 263/672 (39%), Positives = 404/672 (60%), Gaps = 42/672 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+++ ++ +L++ LH H + YY+ D+P I D +YD+L+ EL IE ++P+L+T DS +Q
Sbjct: 3 TEIQQKLEQLRETLHYHAVRYYVEDSPEIPDAEYDRLMRELLDIEAQHPDLVTIDSPSQR 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + + V H M+SLDN F D ++ F+KR+ + L + + E K DG+A+
Sbjct: 63 VGGKPLDGFESVAHEIPMLSLDNAFDDGELESFHKRMADRLPAARFDLFCCEPKLDGLAI 122
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L Y G L QA+TRGDG GEN+T N+ I IPL L + P +EVR EV + K F
Sbjct: 123 SLLYVDGVLVQAATRGDGATGENVTENVRTISAIPLKLRGEGWPNRIEVRGEVFMPKAGF 182
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN+ G K F NPRNAAAG LRQL+ +I + L F+A+ VG + G + SH +
Sbjct: 183 DKLNQNALKKGEKPFVNPRNAAAGSLRQLDSRITATRPLSFYAYSVGVVEGEPLSLSHYQ 242
Query: 252 ----LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQ 307
L NW GL +C E +++ + + +Y I +R L YEIDGVV K++ ++ Q
Sbjct: 243 RFLQLKNW----GLPMCPETKLVNSLEDVKAYYHDILTRRDALAYEIDGVVIKVDDVTLQ 298
Query: 308 KKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRAT 367
++LGF +RAPR+A+AYKF ++E +T + + Q+GRTG ITPVA L+P+ + G+T++ AT
Sbjct: 299 ERLGFVARAPRWAIAYKFPAQEEITTLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNAT 358
Query: 368 LHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIY 427
LHN EI R ++IGD+V++ R+G+VIP++ S +L RP+ ++ P CP+C+S +
Sbjct: 359 LHNADEIARLAVKIGDSVIIRRAGDVIPQVVSVVLDRRPDSAREIVFPAQCPVCHSAVER 418
Query: 428 IESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYK 487
+E +ARC+G + C AQRK L+HF SRKA+++ GLG+K+IE+LV+ +V T DL+K
Sbjct: 419 VEGEAVARCTGGLV-CQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDKEMVATPADLFK 477
Query: 488 INFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLE 547
++ + LDR+ K A N++ A+ KSK TT RF+Y+LGIR VGE TA LA +FK+L+
Sbjct: 478 LSAGVITVLDRMGPKSAQNVVDALVKSKQTTLPRFLYSLGIREVGEATAANLAMHFKSLD 537
Query: 548 CMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------- 594
+ AT EQL+ + +G F Q ++ +I++L+ GI W
Sbjct: 538 AVMAATHEQLIEVQDVGVIVASHVTAFFAQENNQQVITELQQQGIDWPAIEERDESVPQP 597
Query: 595 --------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNI 634
L+ + K G KV +SK T+ L G+ G KL KA +L I
Sbjct: 598 LAGKTVVLTGSLSQLSRSDAKAALQNLGAKVAGSVSKKTDILFVGENAGSKLAKAQELGI 657
Query: 635 KILDEKNFVKIV 646
++ E++ + ++
Sbjct: 658 EVQTEQDLINLM 669
>gi|365920333|ref|ZP_09444675.1| DNA ligase [Cardiobacterium valvarum F0432]
gi|364578319|gb|EHM55532.1| DNA ligase [Cardiobacterium valvarum F0432]
Length = 673
Score = 510 bits (1313), Expect = e-141, Method: Compositional matrix adjust.
Identities = 264/659 (40%), Positives = 383/659 (58%), Gaps = 34/659 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ EL+ + H+ AYY+ DNP I+D +YD L+ EL+ +E + DS T+ VG
Sbjct: 5 IEELRNTIRAHDHAYYVLDNPTIADAEYDALMQELRALEAASGAPVPDDSPTRRVGGKAD 64
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
+ H M+SLDN F+ +D F +R+ L + AE KFDG+A++LRYE
Sbjct: 65 GAFAPITHAVPMLSLDNVFNADDFAAFYRRLQERLGSDALLHLSAEPKFDGLAISLRYEN 124
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L +A+TRGDG GE++T N+ + IPL L PP ++EVR E+ + K F LN
Sbjct: 125 GVLTRAATRGDGATGEDVTANVRAVRTIPLRLLSDTPPAVIEVRGEIYMPKAAFAALNAQ 184
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
G K F NPRNAAAG LRQL+P I + L FFA+G G G +P++++ELL Y+
Sbjct: 185 ALLDGGKTFANPRNAAAGSLRQLDPAITAARQLSFFAYGYGAHDGFILPATYTELLAQYR 244
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
GL +C L+G + + + R +LPYEIDG+VYK + + Q+ GF SRAP
Sbjct: 245 AWGLPVCPLQRALTGADAAAAYMADMAAHRHDLPYEIDGIVYKADRFAEQQTAGFVSRAP 304
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+A+KF + E T ++AIN+Q+GRTG +TPVA L+ V + G+T+T ATLHN E+ RK
Sbjct: 305 RWAVAWKFPAVEKTTIVEAINVQVGRTGAVTPVARLQAVEVGGVTVTNATLHNADEVARK 364
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
++++GDTV V R+G+VIP+I +L RP DS+ F +P CPIC S++I E +ARCS
Sbjct: 365 DVRVGDTVFVRRAGDVIPEIVKVVLEKRPADSQPFTMPTHCPICTSEVIRPEGEAVARCS 424
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G + C AQR L HF+SRKA++I GLG K+IE++V V + DL+++ + L
Sbjct: 425 GG-LHCQAQRVQALIHFASRKALDIQGLGDKLIEQVVANGSVQSPADLFRLTLDDWSALP 483
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+++K A N+L A+ +K TT SRFIYALGIR VG +A+ LA +++ L + A EE L
Sbjct: 484 RMASKSAQNVLDALNAAKETTLSRFIYALGIREVGNVSAELLARHYRELPALLAADEEDL 543
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------LNNP---------- 598
I IG + F +R +I+ L+ G++W ++P
Sbjct: 544 QAIDGIGPVMAQYIRHFFLDDANRAVIADLQAAGVHWPAVEAPVVNADSPLAGKTVVITG 603
Query: 599 --------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
GGK + +SK T+Y++ G K G KL KA +L I I+ E +
Sbjct: 604 TLPTMSRDTAAAHVAALGGKTGSAVSKKTDYVLAGDKAGSKLTKAQELGIAIIGEAQLL 662
>gi|121533514|ref|ZP_01665342.1| DNA ligase, NAD-dependent [Thermosinus carboxydivorans Nor1]
gi|121308073|gb|EAX48987.1| DNA ligase, NAD-dependent [Thermosinus carboxydivorans Nor1]
Length = 673
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 259/677 (38%), Positives = 394/677 (58%), Gaps = 35/677 (5%)
Query: 3 FHAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPEL 62
A + + +L++++H HN YY+ D P ISD ++D L+ L IEE YP L
Sbjct: 1 MQAAIPATLEQAAREAEQLRRQIHYHNHRYYVLDAPEISDAEFDALMRRLIAIEEAYPSL 60
Query: 63 LTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIA 122
+T DS TQ VG E H M+SL N FS ED+ F+ R+ + L + K EY+
Sbjct: 61 ITPDSPTQRVGGAPAEGFDRTLHLTPMLSLANAFSAEDLRAFDNRVRSGLGVDK-AEYVV 119
Query: 123 ELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRC 182
ELK DG+AVNL YE G L + +TRGDG GE++T N+ I +PLVL + PP LLEVR
Sbjct: 120 ELKIDGLAVNLVYEAGRLVRGATRGDGQYGEDVTANVRTIRSVPLVLPVNDPPALLEVRG 179
Query: 183 EVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG 242
EV + +++F +LN+ R G F NPRNAAAG LRQL+P++ + L F + G G
Sbjct: 180 EVYMPRREFDRLNEERQAAGEALFANPRNAAAGSLRQLDPRVTAQRALDIFVYATGRREG 239
Query: 243 MNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKIN 302
+NM +H++ L +G + Y V + ++I++ N +R +LPY+IDG+V K+N
Sbjct: 240 LNM-ETHAQTLETLAALGFKVNPHYRVFGSIEEVIDYCYSWNERRVDLPYDIDGLVIKLN 298
Query: 303 CLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGIT 362
L+ Q +LG T++ PR+A+A+KF +++A T ++ I +++GRTG++TP A L+PV + G T
Sbjct: 299 SLAGQARLGATAKDPRWAIAFKFPAEQATTIVEDIFVRVGRTGVLTPTAQLRPVRLAGST 358
Query: 363 ITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICN 422
++RATLHNE I K+I+IGDTV++H++G VIP++ + + S R + F +P+ CP C
Sbjct: 359 VSRATLHNEDYIRDKDIRIGDTVIIHKAGEVIPEVVAVVASRRNGSERPFVMPDRCPECG 418
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
S ++ +C S C A + GL HF SR AMNI GLG +I L++A +V A
Sbjct: 419 SPVVREPGEAAHKCVNSA--CPAMLREGLIHFVSRDAMNIEGLGPAVIGSLLDAGLVRDA 476
Query: 483 VDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY 542
DLY + F +L +LDR+ K A N+L AI+ SK +R ++ALGIR VG A LA +
Sbjct: 477 ADLYALRFDDLTKLDRMGPKSAQNLLQAIEASKEAGLARLLFALGIRFVGAKAAGTLARH 536
Query: 543 FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI---------- 592
F ++ + +AT E+L+ + +IG ++ + P + L+ +L G+
Sbjct: 537 FGSIHALERATVEELMALEEIGPKIAESVANYFADPQNIALVRKLEAAGVKVTEERPAAK 596
Query: 593 --------YWLNNP-------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIK 631
+ L ++GGKV + +SK TNY+V G++ G KL+KA +
Sbjct: 597 RQTLAGITFVLTGTLATMTRAEATELIESRGGKVSSSVSKKTNYVVAGEEAGSKLDKARE 656
Query: 632 LNIKILDEKNFVKIVKG 648
L I +L E F K+++
Sbjct: 657 LGIPVLTEGEFKKLLEA 673
>gi|259907817|ref|YP_002648173.1| NAD-dependent DNA ligase LigA [Erwinia pyrifoliae Ep1/96]
gi|387870604|ref|YP_005801975.1| DNA ligase [Erwinia pyrifoliae DSM 12163]
gi|224963439|emb|CAX54927.1| DNA ligase [Erwinia pyrifoliae Ep1/96]
gi|283477688|emb|CAY73604.1| DNA ligase [Erwinia pyrifoliae DSM 12163]
Length = 678
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 257/665 (38%), Positives = 395/665 (59%), Gaps = 38/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++T L+ L + Y++ D P + D +YD+L+ EL+ +E ++PELLT DS TQ VG
Sbjct: 7 KITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRDLEAQHPELLTSDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F +E + FNKR+ + LK T +I + ELK DG+AV+L YE
Sbjct: 67 LSVFEQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSTDDITFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GENIT N+ I IPL L+ PE LEVR EV + F ++N+
Sbjct: 127 KGELVRAATRGDGTTGENITANVRTIRAIPLRLSGDNIPERLEVRGEVFMPLVGFEQMNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +G+G L G MP SH L +
Sbjct: 187 QARSSGQKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEMPRSHRARLQRF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + + ++++FY ++ R L ++IDGVV K++ L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVRLCHSPAEVLDFYHQVEAARPTLGFDIDGVVIKVDSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PVL+ G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVLVAGVMVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ S + + ++++ P CP+C S + +E ++ARC
Sbjct: 367 LGLKIGDRVVIRRAGDVIPQVMSVVET--GDNAREIAFPTRCPVCGSDVERVEGEVVARC 424
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+A++I G+G+K+I++LV+ V +L+++ L L
Sbjct: 425 TGGLI-CGAQRKGALKHFVSRRALDIDGMGEKIIDQLVDKEYVKNPAELFELTAGKLTGL 483
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A+ K+K TTF+RF+YALGI VGE TA LA +F L+ + A +
Sbjct: 484 DRMGPKSAQNVVNALVKAKQTTFARFLYALGISEVGEATAANLAAHFGTLDALMAADLDA 543
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRD-VGIYW----------LNNP------- 598
L+ + +G F+++ + +I L D G+ W +++P
Sbjct: 544 LMAVQDVGKVVASHVRNFLDEESNLEIIRLLVDKAGVNWPQVMVVKAEEIDSPFAGKTVV 603
Query: 599 -----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G KV +SK T+ +V G+ G KL KA +L I ++DE+
Sbjct: 604 LTGSLSILSRDEAKDRLQALGAKVSGSVSKKTDLVVAGEAAGSKLAKARELGIDVIDEQE 663
Query: 642 FVKIV 646
++++
Sbjct: 664 MIRLL 668
>gi|374336508|ref|YP_005093195.1| NAD-dependent DNA ligase [Oceanimonas sp. GK1]
gi|372986195|gb|AEY02445.1| DNA ligase, NAD-dependent [Oceanimonas sp. GK1]
Length = 679
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 263/668 (39%), Positives = 385/668 (57%), Gaps = 39/668 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ L+++L+ N YYL D P + D +YD+ + EL +E ++PE +S +Q VG
Sbjct: 7 RLLALREQLNTWNDQYYLEDAPTVPDAEYDRCMRELLALEAEHPEWQDANSPSQRVGGAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN FS++++ F KRI + L ++ + + E K DG+AV+L YE
Sbjct: 67 VSAFPEVQHALPMLSLDNVFSEDELAAFEKRILDRLGRSEPLTFCCEPKLDGLAVSLVYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG+ GE IT N+ I +PL L PE LEVR EV + + F ++N+
Sbjct: 127 QGRLVQAATRGDGSTGEGITENVRTIRAVPLRLRGAGWPERLEVRGEVYMPRAGFERMNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+ +I ++ L F+ +GVG + G + H ++L
Sbjct: 187 RARLEGGKVFANPRNAAAGSLRQLDSRITASRPLAFYCYGVGLVEGAPLGERHFDVLQTL 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + E +SG ++ I +R LPYEIDGVVYK++ L+ Q +LGF +RA
Sbjct: 247 KGWGLPVSPEVKRVSGREGCQAYHDDILARRDQLPYEIDGVVYKVDELALQAELGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E LT++ + Q+GRTG ITPVA LKPV + G+T++ ATLHN EI R
Sbjct: 307 PRWATAHKFPAQEELTELLNVEFQVGRTGAITPVAKLKPVAVAGVTVSNATLHNADEIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
+ IGDTV+V R+G+VIP++ +L RP ++ P CP+C+S I IE +ARC
Sbjct: 367 LGVMIGDTVIVRRAGDVIPQVVGVVLERRPEHARAVAFPERCPVCDSDIERIEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF+SRKA++I GLG K++E+LV+ ++V T DL+ ++ L+ L
Sbjct: 427 TGGLI-CAAQRKEALRHFASRKALDIEGLGTKLVEQLVDHDLVKTPADLFHLDQPTLMGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A +L A K++ TT RF+YALGIR VGE TA LA +F L+ + A E
Sbjct: 486 ERMGEKSAVKLLAAFDKARHTTLPRFLYALGIREVGEATANNLARHFLELDAVMNAEVET 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL------RDVGIYW--LNNPNTK------- 601
L+ +P +G K F QP +R ++ L G+ W + P
Sbjct: 546 LIAVPDVGEIVAKHIYYFFRQPHNREVVEALVQPRNEGGCGLTWPAMEAPKADAQPLAGQ 605
Query: 602 -----------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
G KV + +S T+ LV G+ G KL KA +L + I+D
Sbjct: 606 TFVLTGTLSRMPRNEAKAALQALGAKVASSVSAKTSVLVAGEAAGSKLTKAQELGVAIMD 665
Query: 639 EKNFVKIV 646
E + ++
Sbjct: 666 EDGLIALL 673
>gi|410643464|ref|ZP_11353960.1| DNA ligase [Glaciecola chathamensis S18K6]
gi|410136874|dbj|GAC12147.1| DNA ligase [Glaciecola chathamensis S18K6]
Length = 677
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 256/663 (38%), Positives = 400/663 (60%), Gaps = 35/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+T+L ++ +N YY+ DNP + D +YD+L+ EL IE+ +P+L + DS +Q VG
Sbjct: 10 RLTQLINTINEYNYQYYVQDNPSVPDAEYDRLMRELLDIEKAHPDLRSPDSPSQKVGGAA 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F ++D+ F KRI + LK+T I + E K DG+AV++ YE
Sbjct: 70 LSAFEQVEHEVPMLSLDNAFDEDDMFAFEKRIKDRLKITSEISFSCEPKLDGLAVSILYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG +GENITTN+ I +PL L + P+ LEVR EV++ + F LN+
Sbjct: 130 DGKLVRAATRGDGRVGENITTNVRTIANVPLSLRGEDFPQRLEVRGEVIMTRAGFDILNE 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP--SSHSELLN 254
+ G K F NPRNAAAG LRQL+PKI + L F+++ +G + P ++HS L
Sbjct: 190 AQIKKGKKPFVNPRNAAAGSLRQLDPKITAARPLLFYSYSLGLVENEQQPLGTTHSARLK 249
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
GL + E V G + + ++ KI R L Y+IDGVV+K++ ++ Q+ LGF +
Sbjct: 250 QLSDWGLPLSKELEVAQGAKECLTYFHKIGELRSQLSYDIDGVVFKVDDIAMQQTLGFVA 309
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+A+KF ++E ++ + + Q+GRTG ITPVA L P + G+T++ ATLHN+ EI
Sbjct: 310 RAPRWAIAHKFAAQEEMSTLLDVEFQVGRTGAITPVARLAPTFVGGVTVSNATLHNQDEI 369
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
R I+IGD+V++ R+G+VIP+I + + RP+D+K P CP+C+S + +E +A
Sbjct: 370 NRLGIKIGDSVIIRRAGDVIPQIVAIVADKRPDDAKDILFPESCPVCSSAVEKLEGEAVA 429
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+G + C AQRK ++HF+SRKA++I GLG K+IE+LV+A++V + D + ++ L
Sbjct: 430 RCTGG-LYCKAQRKEAMKHFASRKALDIDGLGDKLIEQLVDADMVKSPADFFALDIAPLS 488
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
++R+ K A N++ +++KSK TT ++F+Y+LGIR VGE TA+ LA +F L+ + +A
Sbjct: 489 SMERMGEKSAVNLVNSLEKSKKTTLAKFLYSLGIREVGEATAQNLALHFLTLDAIEQADL 548
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------- 594
E L + +G + + F + + +IS L++ G++W
Sbjct: 549 EALQAVSDVGIIVAQHVVNFFKEEHNLEVISALQEAGVHWPKIEKVAVDELPLAGQVYVL 608
Query: 595 --------LNNPNTK----GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
N K G KV +S T+ LV G+K G KL KA L +K+++E
Sbjct: 609 TGTLNVMDRNQAKAKLQSLGAKVSGSVSAKTDCLVAGEKAGSKLTKAQDLGVKVMNEDEM 668
Query: 643 VKI 645
+ +
Sbjct: 669 LAM 671
>gi|109898096|ref|YP_661351.1| NAD-dependent DNA ligase [Pseudoalteromonas atlantica T6c]
gi|122972028|sp|Q15UZ1.1|DNLJ_PSEA6 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|109700377|gb|ABG40297.1| DNA ligase, NAD-dependent [Pseudoalteromonas atlantica T6c]
Length = 677
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 255/663 (38%), Positives = 400/663 (60%), Gaps = 35/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+T++ ++ +N YY+ DNP + D +YD+L+ EL IE +P+L + DS +Q VG
Sbjct: 10 RLTQIINTINEYNYQYYVQDNPSVPDAEYDRLMRELLDIENNHPDLRSPDSPSQKVGGAA 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F ++D+ F KRI + LK++ I + E K DG+AV++ YE
Sbjct: 70 LSAFEQVEHEVPMLSLDNAFDEDDMQAFEKRIKDRLKISSEISFSCEPKLDGLAVSILYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG +GENITTN+ I +PL L + P LEVR EV++ + F+ LN+
Sbjct: 130 NGQLVRAATRGDGRVGENITTNVRTIANVPLRLRGENFPSRLEVRGEVIMTRAGFVTLNE 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP--SSHSELLN 254
+ G K F NPRNAAAG LRQL+PKI + L F+++ +G + P +HS L
Sbjct: 190 AQIKKGKKPFVNPRNAAAGSLRQLDPKITAARPLLFYSYSLGLVENEQQPLGETHSSRLA 249
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
+ GL + E V G + + ++ KI R L Y+IDGVV+K++ ++ Q++LGF +
Sbjct: 250 QLSEWGLPLSKELEVTQGATQCLTYFHKIGELRSQLSYDIDGVVFKVDNIAMQQELGFVA 309
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+A+KF ++E ++ + + Q+GRTG ITPVA L+P + G+T++ ATLHN+ EI
Sbjct: 310 RAPRWAIAHKFPAQEEMSTLLDVEFQVGRTGAITPVARLEPTFVGGVTVSNATLHNQDEI 369
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
R I+IGD+V++ R+G+VIP+I + + RP+D+K P CP+C+S I +E +A
Sbjct: 370 NRLGIKIGDSVIIRRAGDVIPQIVAIVADKRPDDAKDIVFPESCPVCDSAIEKLEGEAVA 429
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+G + C AQRK ++HF+SRKA+++ GLG K+IE+LV+A +V + D + ++ L
Sbjct: 430 RCTGG-LYCKAQRKEAMKHFASRKALDVDGLGDKLIEQLVDAEMVKSPADFFALDIAPLS 488
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
++R+ K A N++ A++KSK TT ++F+Y+LGIR VGE TA+ LA +F LE + +A
Sbjct: 489 SMERMGEKSAVNLVNALEKSKKTTLAKFLYSLGIREVGEATAQNLAQHFLTLEAIEQADL 548
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------- 594
+ L + +G + F + + +IS L + G++W
Sbjct: 549 DALQAVSDVGVIVAQHVFNFFKEEHNLEVISALLEAGVHWPKIEKLALDELPLAGQVYVL 608
Query: 595 --------LNNPNTK----GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
N+ K G KV +S T+ LV G+K G KL KA L +K+++E +
Sbjct: 609 TGTLNVMDRNSAKAKLQSLGAKVSGSVSAKTDCLVAGEKAGSKLTKAQDLGVKVMNEDDM 668
Query: 643 VKI 645
+ +
Sbjct: 669 LAM 671
>gi|166216287|sp|Q0HK31.2|DNLJ_SHESM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
Length = 688
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 258/660 (39%), Positives = 390/660 (59%), Gaps = 38/660 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L + L+ HNI YY+ D P I+D++YD+L+ LK++E +YP+ + DS TQ VG +
Sbjct: 30 LCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAADSPTQRVGGMALAKF 89
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ + H M+SLDN F + D F+KR+++ + + + E K DG+AV++ Y G L
Sbjct: 90 EQITHLKPMLSLDNAFDEADFSAFHKRVSDRVG---EVSFCCEPKLDGLAVSILYRNGVL 146
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
++A+TRGDG +GE+IT N+ I IPL L PEL+EVR E + K F LN+
Sbjct: 147 ERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVRGEAFMPKAAFEALNERARL 206
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPSSHSELLNWYQK 258
K F NPRNAAAG LRQL+ KI ++ L F+A+ +G E + +H E L +
Sbjct: 207 KDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPTSHELAKTHYEQLQQLKS 266
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL + E V ++++ +Y+ I +R LP+EIDGVV K+N ++ Q+ LGF +++PR
Sbjct: 267 WGLPVSSEIKVCDELSQVFAYYQDILTRRSYLPFEIDGVVMKVNDIAQQQTLGFVAKSPR 326
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E +T ++ ++ Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R
Sbjct: 327 WAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIERLG 386
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
+ +GDTV++ R+G+VIP+I + + RP D+K P CP+C S + +E + RCSG
Sbjct: 387 VMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKAIAFPQHCPVCGSLVERLEGEAVTRCSG 446
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+K+ + LDR
Sbjct: 447 GLF-CEAQRKEAIKHFASRKALDIDGMGDKIVEQLIDKELVQSPADLFKLPASMMTMLDR 505
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N+ AI+ +K TT RF+YALGIR VGE TA LA +F +LE + AT EQL+
Sbjct: 506 MGMKSATNLAQAIEAAKTTTLPRFLYALGIREVGEATASNLATHFGSLEALRVATIEQLI 565
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------ 594
+ IG + F QP + +I L G+ W
Sbjct: 566 QVEDIGEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPTIAAPSADEQPLKGQTWVLTGTL 625
Query: 595 --LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
LN + K G KV +SKNT+ LV G+ G KL KA +L +K++ E + ++
Sbjct: 626 NQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 685
>gi|438000130|ref|YP_007183863.1| DNA ligase [Candidatus Kinetoplastibacterium blastocrithidii (ex
Strigomonas culicis)]
gi|429339364|gb|AFZ83786.1| DNA ligase [Candidatus Kinetoplastibacterium blastocrithidii (ex
Strigomonas culicis)]
Length = 645
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 271/643 (42%), Positives = 411/643 (63%), Gaps = 49/643 (7%)
Query: 51 ELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITN 110
EL +E YP L+T+ S TQ VG E+ + H+ M+SL N F+ EDV +FNKR+ +
Sbjct: 3 ELLNLESMYPNLITEYSPTQRVGSTPLESFNKIEHSIPMLSLSNAFTSEDVELFNKRVIS 62
Query: 111 EL----KLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIP 166
L L ++EY +LK DG+A+NLRYE G L STRGDG IGE++T NI +I IP
Sbjct: 63 SLLKKIDLRDDVEYFCDLKLDGLAINLRYENGILVHGSTRGDGYIGEDVTANIRVIRSIP 122
Query: 167 LVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINK 226
L L I P++L+VR EVL+Y DF LN Y G + F NPRNAAAG LR L+ K++
Sbjct: 123 LRL-IGDFPKILDVRGEVLMYNVDFENLNNYNIRNGGRVFVNPRNAAAGSLRNLDSKVSS 181
Query: 227 NKILHFFAHGVGEL-RGMNMPS--------SHSELLNWYQKIGLSICGEY-SVLSGVNKL 276
+ L FFA+G G++ + P+ +H +L+W+ +GL + Y V+SG++ +
Sbjct: 182 MRKLRFFAYGWGKIIDDQSAPNKLFKCQYKTHDSVLDWFISLGLPVNKRYHKVVSGISGI 241
Query: 277 IEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKA 336
+++Y I R +LPY IDGVVYK+N L Q+ LG++SRAP+FALA+KFL++EA+T+I
Sbjct: 242 LDYYNSIVNDRDSLPYGIDGVVYKVNSLDRQEMLGYSSRAPKFALAHKFLAEEAVTQIIG 301
Query: 337 INIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPK 396
I++Q+GRTG+ITPVA LKP+ + G+TI+ ATLHNE EI RK+I+IGD VV+ R+G+VIP+
Sbjct: 302 IDVQVGRTGVITPVARLKPIFVGGVTISNATLHNEHEIRRKDIRIGDFVVIRRAGDVIPE 361
Query: 397 ITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSS 456
+ I+ LRP ++ F + CPIC+S I I++ + RC+G + C AQ K GL+H S
Sbjct: 362 VVYPIIDLRPVNTTPFHMVVSCPICSSSIKRIDNEIAYRCTGG-LYCSAQLKQGLKHALS 420
Query: 457 RKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKL 516
RKA NI+G G+K+I+KLV+ + + VD+++++ +L++++ V+ K A N+L AI ++
Sbjct: 421 RKAFNIVGFGEKLIDKLVDLGYLKSLVDVFRLSCSDLMKVELVAEKSATNLLRAINNARK 480
Query: 517 TTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576
+ S FI+A+GIRHVGE TA ++AN F LE + +A+ + LL++ +GS T ++ F +
Sbjct: 481 PSLSNFIFAMGIRHVGEATAIDIANNFNTLESIIQASIDDLLSVKDVGSKTAESIRLFFS 540
Query: 577 QPLHRLLISQLRDVGIYWLNNPNTK---------------------------------GG 603
+ + +I+ L+ +G+Y L++ K GG
Sbjct: 541 EEHNIGIINSLKSIGVYPLSDEYYKSNNLKLLEGKLFAITGRLPDYSREDIVKHIEDNGG 600
Query: 604 KVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
+V + ISK +YL+ G+ GKKL+ AI IK++D+K F+K++
Sbjct: 601 RVTSNISKKNHYLIAGESSGKKLDFAIDNGIKVIDQKAFMKLI 643
>gi|399544763|ref|YP_006558071.1| DNA ligase [Marinobacter sp. BSs20148]
gi|399160095|gb|AFP30658.1| DNA ligase [Marinobacter sp. BSs20148]
Length = 698
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 264/688 (38%), Positives = 389/688 (56%), Gaps = 53/688 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV +L+ + HN YY+ D+P + D +YD+L EL+ E +YPEL T S TQ VG
Sbjct: 11 RVDQLRTTITDHNHHYYVLDDPQVPDAEYDRLFRELQAREAEYPELATATSPTQRVGSAV 70
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL---------------------KLT 115
N V H M+SLDN FS +++ F++R+ L K
Sbjct: 71 ETNFAQVIHRIPMLSLDNAFSADELRDFDRRVRERLNRGKTAGESSTKEHSTEEEGSKEE 130
Query: 116 KNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPP 175
+ IEY+ E K DG+AV+L Y+ G L +A+TRGDG GE+IT NI I +PL L P
Sbjct: 131 RTIEYVCEPKLDGLAVSLHYQNGELVRAATRGDGYTGEDITANIRTIASVPLTLRGGDFP 190
Query: 176 ELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAH 235
+ +EVR EV + + F +LN+ G K F NPRNAAAG LRQ + + L A+
Sbjct: 191 QTVEVRGEVYMPRAGFDRLNQRLAGRGEKTFVNPRNAAAGSLRQKKSSVTARRPLEMCAY 250
Query: 236 GVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEID 295
V +P +H + L + G I E S+ +G ++ +E Y+ + KR LPYEID
Sbjct: 251 SVAVSDDSALPPTHWKGLQQVSEWGFRINPEMSLANGADQCLEAYEALMAKRDRLPYEID 310
Query: 296 GVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKP 355
G+V+K+N L Q++LGF SRAPR+A+A KF ++E LT ++++ Q+GRTG ITPVA LKP
Sbjct: 311 GIVFKVNRLDLQQQLGFVSRAPRWAIAQKFPAEEELTVVESVEFQVGRTGAITPVARLKP 370
Query: 356 VLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIP 415
V + G+T++ ATLHN E+ R ++ IGDTV + R+G+VIPK+ + RP D+ + ++P
Sbjct: 371 VFVGGVTVSNATLHNMDEVRRLDLHIGDTVFIRRAGDVIPKVVKVVQDKRPVDAWVIELP 430
Query: 416 NICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVN 475
CP C S ++ IE +IARCSG C AQRK ++H++SRKA++I GLG K ++ LV+
Sbjct: 431 AQCPACGSDVVQIEGEVIARCSGGLF-CPAQRKEAIRHYASRKALDIEGLGDKWVDILVD 489
Query: 476 ANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETT 535
+ V T DLY++ +L+ L+R+ +K A+N++ AI S+ RF+YALGIR VGE T
Sbjct: 490 SEKVETIADLYRLRKADLIGLERMGDKSASNLIAAIDASRQPLLWRFLYALGIREVGEAT 549
Query: 536 AKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL 595
AK LA YF +LE + +A E L + +G F QP ++ ++ L+ G+ W
Sbjct: 550 AKGLAGYFGSLEAIAEADENALQAVSDVGPIVAGHLRSFFEQPHNQEILQSLKQAGVIWQ 609
Query: 596 NNPNTK-------------------------------GGKVVNFISKNTNYLVKGQKPGK 624
T G KV +SK T+ +V G+ G
Sbjct: 610 TQEITAASMPLHGQTWVLTGTMEQMTRDQAKQKLEGLGAKVAGSVSKKTSCVVAGEAAGS 669
Query: 625 KLEKAIKLNIKILDEKNFVKIVKGFSTE 652
KL KA +L +++L E+ + +++G E
Sbjct: 670 KLTKAQQLGVEVLSEQGLLDLLRGHDVE 697
>gi|410613749|ref|ZP_11324803.1| DNA ligase [Glaciecola psychrophila 170]
gi|410166664|dbj|GAC38692.1| DNA ligase [Glaciecola psychrophila 170]
Length = 679
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 262/659 (39%), Positives = 391/659 (59%), Gaps = 35/659 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
LK + N YY+ DNP + D +YD+ + L+ IE+KYPELLT DS +Q VG +
Sbjct: 14 LKTSIAECNYQYYVLDNPSVPDAEYDRQMQALQIIEQKYPELLTDDSPSQKVGDMPLPEF 73
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ V H M+SLDN F + + F KR+ + LK I Y E K DG+AV+L YE G L
Sbjct: 74 EQVAHEVPMLSLDNAFDKDSFLAFEKRMQDRLKDDAEISYSCEPKLDGLAVSLLYENGKL 133
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
+ +TRGDG +GENIT+N+ I IPL L PE LEVR EV++ + F +LNK +
Sbjct: 134 VRGATRGDGRVGENITSNVRTIRNIPLTLRGDNYPERLEVRGEVIMTRDGFARLNKTQVE 193
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP--SSHSELLNWYQK 258
K F NPRNAAAG LRQL+ +I + L FF++ +G + P SHS L
Sbjct: 194 HDKKAFANPRNAAAGSLRQLDSRITAKRPLLFFSYSLGLVENEQYPLADSHSARLKQLSD 253
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL + E V G +++Y+ + R L Y+IDGVV+K + + Q++LGF +RAPR
Sbjct: 254 WGLPLSKELQVAQGAEACLDYYQHLGNIRDALNYDIDGVVFKADNIELQQQLGFVARAPR 313
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN+ EI R
Sbjct: 314 WAIAHKFPAQEEMTVVQDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNQDEIQRLG 373
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
++IGDTV++ R+G+VIP++ S I+ RP++++ P CPIC+S I +E ++ARC+G
Sbjct: 374 LKIGDTVIIRRAGDVIPQVVSVIVDKRPDNARDIVFPETCPICDSAIEKLEDEVVARCTG 433
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
+ C AQ K ++HF+SRKA +I GLG K+IE+LV+ +V T D +K+ F + LDR
Sbjct: 434 G-LYCAAQLKESMKHFASRKAFDIDGLGDKIIEQLVDQKLVKTPADFFKLEFMQISNLDR 492
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N++ +++K K TT ++F+Y+LGIR VGE TA LA YF +LE + KA E L
Sbjct: 493 MGEKSAANLIQSLEKCKQTTLAKFMYSLGIREVGEATATNLAAYFCDLETIKKADLESLQ 552
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------ 594
+ +G+ + + F + + +I +L GI+W
Sbjct: 553 EVSDVGAIVAQHVVNFFAEEHNVQVIDELLVAGIHWPKIDKIEVDSLPLAGQTFVLTGTL 612
Query: 595 --LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
++ K G KV +S T+ +V G+K G KL KA +L +K+L+E+ + +
Sbjct: 613 EQMDRNAAKAMLQSLGAKVAGSVSAKTSCVVAGEKAGSKLAKAEELGVKVLNEQQMLDM 671
>gi|333923916|ref|YP_004497496.1| DNA ligase [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333749477|gb|AEF94584.1| DNA ligase [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 669
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 260/672 (38%), Positives = 404/672 (60%), Gaps = 47/672 (6%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
++ RV EL++E++ HN YY+ DNP I+D +YDQL+ EL ++E YPEL+T DS TQ V
Sbjct: 7 EIKARVEELRREINYHNHQYYVLDNPTITDGQYDQLVQELLRLENAYPELVTPDSPTQRV 66
Query: 73 GLVGGENSK---YVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGI 129
G GE K V H M+SL N FS+ D+ F++R+ + L + +EY+ ELK DG+
Sbjct: 67 G---GEIQKGFTAVQHRVPMLSLSNAFSENDLREFDRRVRSNLP-GEEVEYVLELKIDGL 122
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
A++L YE G + +TRGDG +GE+IT N+ I IPL + P LEVR E + K+
Sbjct: 123 AISLWYEQGVFVRGATRGDGELGEDITANLRTIKAIPLRIKESIP--FLEVRGEAYMPKE 180
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F++LN+ R G F NPRNAAAG LRQL+P++ ++ L F + +G L G N P +H
Sbjct: 181 SFVRLNEAREEAGEPLFANPRNAAAGSLRQLDPRVTASRNLSVFMYAIGHLEGAN-PGTH 239
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
+ LL W + +G + Y + + ++I K +RF LPY IDG+V K+N L Q++
Sbjct: 240 ARLLGWLKDLGFRVNQHYKLCKDIEEVIRQIDKWQEQRFELPYAIDGLVIKVNSLDQQQR 299
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LG T ++PR+A+AYKF +++A++ IK I I++GRTG++TP A+L+PV + G T+++ATLH
Sbjct: 300 LGATLKSPRWAIAYKFPAEQAVSTIKDIIIRVGRTGVLTPTAILEPVQLAGTTVSKATLH 359
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
NE I +K+I+IGD +V ++G++IP++ R K F +P+ CP CN+ ++ +
Sbjct: 360 NEDIIRQKDIRIGDQALVQKAGDIIPEVVLVFPERRTGQEKPFTMPSTCPECNAPVVRLP 419
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
RC+ C A + G+ HF SR AM+I+GLG+ ++ +L+ A +V DLY +
Sbjct: 420 GEAAHRCTNK--NCPAISREGIIHFVSRGAMDIMGLGESIVNQLIMAGLVQDPADLYDLK 477
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
+++L++LDR+ + + N+L AI SK + ++ + ALGIRHVGE AK LA +F ++ +
Sbjct: 478 YEDLIKLDRMGARSSRNLLNAIAASKHNSLAQLLVALGIRHVGERAAKILARHFGSMSAL 537
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK-------- 601
AT E L IP+IG ++ + + +P ++ LI +L G+ + N +
Sbjct: 538 MAATVEDLTVIPEIGPKIAESIVDYFARPENKTLIQRLDRAGVN-MEEANQQAEPGQQPL 596
Query: 602 --------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIK 635
GGKV +SK T+Y+V G+ PG K +KA +L I
Sbjct: 597 AGKTFVITGTLEGFSRQEAQRAIEELGGKVSGSVSKKTDYVVVGENPGSKYDKAQQLGIP 656
Query: 636 ILDEKNFVKIVK 647
IL+E+ FV ++K
Sbjct: 657 ILNEQEFVALLK 668
>gi|113969850|ref|YP_733643.1| DNA ligase, NAD-dependent [Shewanella sp. MR-4]
gi|113884534|gb|ABI38586.1| DNA ligase, NAD-dependent [Shewanella sp. MR-4]
Length = 690
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 258/660 (39%), Positives = 390/660 (59%), Gaps = 38/660 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L + L+ HNI YY+ D P I+D++YD+L+ LK++E +YP+ + DS TQ VG +
Sbjct: 32 LCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYPQFVAADSPTQRVGGMALAKF 91
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ + H M+SLDN F + D F+KR+++ + + + E K DG+AV++ Y G L
Sbjct: 92 EQITHLKPMLSLDNAFDEADFSAFHKRVSDRVG---EVSFCCEPKLDGLAVSILYRNGVL 148
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
++A+TRGDG +GE+IT N+ I IPL L PEL+EVR E + K F LN+
Sbjct: 149 ERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELVEVRGEAFMPKAAFEALNERARL 208
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPSSHSELLNWYQK 258
K F NPRNAAAG LRQL+ KI ++ L F+A+ +G E + +H E L +
Sbjct: 209 KDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPTSHELAKTHYEQLQQLKS 268
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL + E V ++++ +Y+ I +R LP+EIDGVV K+N ++ Q+ LGF +++PR
Sbjct: 269 WGLPVSSEIKVCDELSQVFAYYQDILTRRSYLPFEIDGVVMKVNDIAQQQTLGFVAKSPR 328
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E +T ++ ++ Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R
Sbjct: 329 WAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIERLG 388
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
+ +GDTV++ R+G+VIP+I + + RP D+K P CP+C S + +E + RCSG
Sbjct: 389 VMVGDTVIIRRAGDVIPQIVAIVPERRPEDAKAIAFPQHCPVCGSLVERLEGEAVTRCSG 448
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+K+ + LDR
Sbjct: 449 GLF-CEAQRKEAIKHFASRKALDIDGMGDKIVEQLIDKELVQSPADLFKLPASMMTMLDR 507
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N+ AI+ +K TT RF+YALGIR VGE TA LA +F +LE + AT EQL+
Sbjct: 508 MGMKSATNLAQAIEAAKTTTLPRFLYALGIREVGEATASNLATHFGSLEALRVATIEQLI 567
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------ 594
+ IG + F QP + +I L G+ W
Sbjct: 568 QVEDIGEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPTIAAPSADEQPLKGQTWVLTGTL 627
Query: 595 --LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
LN + K G KV +SKNT+ LV G+ G KL KA +L +K++ E + ++
Sbjct: 628 NQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 687
>gi|254514186|ref|ZP_05126247.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3]
gi|219676429|gb|EED32794.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR5-3]
Length = 675
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 252/659 (38%), Positives = 381/659 (57%), Gaps = 33/659 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV L+++L R N YY+ D P + D YD L EL+K+E ++PEL S TQ VG
Sbjct: 10 RVVALREQLERWNHQYYVLDEPTVPDQDYDAALRELQKLETEHPELQDPSSPTQRVGAAP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN FSDE++ F +R+ + L + E +AE K DGIAV+L Y
Sbjct: 70 LSAFESVAHPMPMLSLDNAFSDEELGAFLQRVMDRLDVESLPELVAEPKLDGIAVSLIYR 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG GE+IT N+ I +PL L P+++E+R E+ + + F N+
Sbjct: 130 DGVLARAATRGDGTHGEDITLNVRTIGSVPLRLGGDACPDVVEIRGEIFMPRAGFEAFNE 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
Y G K F NPRNAAAG LRQL+ +I + L F A+ G+ P SH E+L +
Sbjct: 190 YARRNGEKPFVNPRNAAAGSLRQLDSQITARRPLEFCAYASGQHPESQWPKSHWEVLQLF 249
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
G+ I LS + + +++Y+++ +R +L ++IDG+VYK+N Q KLGF +RA
Sbjct: 250 ASWGVPISRYAERLSSLEECVDYYQRLGDQRDSLSFDIDGIVYKVNDFEAQSKLGFVARA 309
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+++A KF ++EA+TK+ + Q+GRTG ITPVA L+PV + G+T++ ATLHN E+ R
Sbjct: 310 PRWSIARKFPAQEAVTKVTGVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNMDEVGR 369
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
+ GDTVVV R+G+VIP++ S I R D+ + P+ CP+C S + + RC
Sbjct: 370 LELHDGDTVVVRRAGDVIPQVVSVIEERRLPDAALIAAPSACPVCASAVQRVAGEATLRC 429
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG + C AQ KA ++HF+SR+AM+I GLG+K++E++V+ +V DL+++ ++LL L
Sbjct: 430 SGGLV-CPAQLKAAVRHFASRRAMDIDGLGEKLVEQMVDTGLVRDVADLFRLEQRSLLTL 488
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A +L AI+ S+ TT +RFI+ALGIR VGE TA LA YF ++E + A +
Sbjct: 489 ERMGEKSATKLLAAIESSRRTTLARFIFALGIREVGEATALALATYFGSIEAIRAADLDS 548
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------LNNP---------- 598
LL +P +G + F + ++ ++ +L G+ W P
Sbjct: 549 LLEVPDVGPVVAQHLRAFFSAQANQQVLERLLAAGVVWPAVSPAQNAQGPLEGQTWVVSG 608
Query: 599 --------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G + +S T+ L+ G G KL KA L ++I+DE+ F+
Sbjct: 609 KLESQSRDEAEEALRALGARTSKSVSGKTSVLLAGPGAGSKLAKAESLGVEIVDEQEFL 667
>gi|119472555|ref|ZP_01614603.1| NAD-dependent DNA ligase [Alteromonadales bacterium TW-7]
gi|119444879|gb|EAW26179.1| NAD-dependent DNA ligase [Alteromonadales bacterium TW-7]
Length = 672
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 262/668 (39%), Positives = 391/668 (58%), Gaps = 34/668 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S +S ++ L+ L +HN YY+ D P I D +YD+LL EL +E + PE L+ DS TQ
Sbjct: 3 SSISEQINHLRTLLEQHNYNYYVLDTPSIPDAEYDRLLRELSALETQNPEFLSADSPTQK 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + V H M+SLDN FS+++ FN+RI L + + E K DG+AV
Sbjct: 63 VGGAALSKFEQVAHQVPMLSLDNAFSEDEFTGFNRRIKERLMSIDELTFCCEPKLDGLAV 122
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
++ Y G L QA+TRGDG GENIT N+ I +PL L YP EL EVR EV + F
Sbjct: 123 SIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKEL-EVRGEVFMDSAGF 181
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
KLN G K F NPRNAAAG LRQL+ KI + L F+A+ G + ++P H +
Sbjct: 182 EKLNNEAQKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIPEDHFQ 241
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
L GL +C E ++ G +++Y I +R L YEIDGVV K+N + Q++LG
Sbjct: 242 QLEKLTDWGLPLCPETKLVEGPQAALDYYDDILTRRSELKYEIDGVVIKVNKKALQERLG 301
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+AYKF ++E +T++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 302 FVARAPRWAIAYKFPAQEEVTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNG 361
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI R +++GDTV++ R+G+VIP+IT +L RP D++ P+ CPIC+S + +E
Sbjct: 362 DEIARLGVKVGDTVIIRRAGDVIPQITQVVLERRPTDARDIVFPSACPICDSHVEKVEGE 421
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC+G + C AQRK ++HF+SRKA++I GLG K++++LV+ ++ T DL+ +
Sbjct: 422 AVARCTGGLV-CPAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPADLFILKQG 480
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L+R+ K A N++ A+ ++K TT ++F+Y+LGIR GE TA+ LAN+F LE +
Sbjct: 481 HFESLERMGPKSAKNLVTALNEAKATTLAKFLYSLGIREAGEATAQNLANHFLTLENIIS 540
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------------- 594
A+ E L + +G F ++ + +++ L + G++W
Sbjct: 541 ASVESLTQVSDVGDIVASHVRGFFDEEHNLAVVNALIEQGVHWPALSAPSEDEQPLAGLT 600
Query: 595 ---------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
LN + K G KV +S T+ LV G+K G KL KA L I +L E
Sbjct: 601 YVLTGTLNTLNRNDAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDVLTE 660
Query: 640 KNFVKIVK 647
+++++
Sbjct: 661 DGLIELLE 668
>gi|410626776|ref|ZP_11337528.1| DNA ligase [Glaciecola mesophila KMM 241]
gi|410153696|dbj|GAC24297.1| DNA ligase [Glaciecola mesophila KMM 241]
Length = 677
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 258/663 (38%), Positives = 399/663 (60%), Gaps = 35/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+T++ ++ +N YY+ DNP + D +YD+L+ EL IE +P+L + DS +Q VG
Sbjct: 10 RLTQIINTINEYNYQYYVQDNPSVPDAEYDRLMRELLDIENDHPDLRSPDSPSQKVGGAA 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F + D+ F KRI + LK++ I + E K DG+AV++ YE
Sbjct: 70 LSAFEQVEHEVPMLSLDNAFDEGDMQAFEKRIKDRLKISTEISFSCEPKLDGLAVSILYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG +GENITTN+ I +PL L + P LEVR EV++ + F+ LN+
Sbjct: 130 NGQLVRAATRGDGRVGENITTNVRTIANVPLRLRGENFPSRLEVRGEVIMTRAGFVTLNE 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP--SSHSELLN 254
+ G K F NPRNAAAG LRQL+PKI + L F+++ +G + P +HS L
Sbjct: 190 AQIKKGKKPFVNPRNAAAGSLRQLDPKITAARPLLFYSYSLGLVENEQQPLGETHSSRLA 249
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
+ GL + E V G + + ++ KI R L Y+IDGVV+K++ ++ Q++LGF +
Sbjct: 250 QLSEWGLPLSKELEVAQGATQCLTYFHKIGELRSQLSYDIDGVVFKVDNIAMQQELGFVA 309
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+A+KF ++E ++ + + Q+GRTG ITPVA L+P + G+T++ ATLHN+ EI
Sbjct: 310 RAPRWAIAHKFPAQEEMSTLLDVEFQVGRTGAITPVARLEPTFVGGVTVSNATLHNQDEI 369
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
R I+IGD+V++ R+G+VIP+I + + RP+D+K P CP+C+S I +E +A
Sbjct: 370 NRLGIKIGDSVIIRRAGDVIPQIVAIVADKRPDDAKDILFPESCPVCDSAIEKLEGEAVA 429
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+G + C AQRK ++HF+SRKA+++ GLG K+IE+LV+A +V + D + ++ L
Sbjct: 430 RCTGG-LYCKAQRKEAMKHFASRKALDVDGLGDKLIEQLVDAEMVKSPADFFALDIAPLS 488
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
++R+ K A N++ +++KSK TT ++F+Y+LGIR VGE TA+ LA +F LE + +A
Sbjct: 489 SMERMGEKSAVNLVNSLEKSKKTTLAKFLYSLGIREVGEATAQNLAQHFLTLEAIEQADL 548
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------- 594
E L + +G + F + + +IS L D G++W
Sbjct: 549 EALQAVSDVGVIVAQHVFNFFKEEHNLEVISALLDAGVHWPKIEKLALDELPLAGQVYVL 608
Query: 595 ---LN--NPNTK-------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
LN + NT G KV +S T+ LV G+K G KL KA L +K++ E
Sbjct: 609 TGTLNVMDRNTAKAKLQSLGAKVSGSVSAKTDCLVAGEKAGSKLTKAQDLGVKVMSEDEM 668
Query: 643 VKI 645
+ +
Sbjct: 669 LAM 671
>gi|410645102|ref|ZP_11355570.1| DNA ligase [Glaciecola agarilytica NO2]
gi|410135335|dbj|GAC03969.1| DNA ligase [Glaciecola agarilytica NO2]
Length = 677
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 255/663 (38%), Positives = 400/663 (60%), Gaps = 35/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+T+L ++ +N YY+ DNP + D +YD+L+ EL IE+ +P+L + DS +Q VG
Sbjct: 10 RLTQLINTINEYNYQYYVQDNPSVPDAEYDRLMRELLDIEKAHPDLRSPDSPSQKVGGAA 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F ++D+ F KRI + LK+T I + E K DG+AV++ YE
Sbjct: 70 LSAFEQVEHEVPMLSLDNAFDEDDMFAFEKRIKDRLKITSEISFSCEPKLDGLAVSILYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG +GENITTN+ I +PL L + P+ LEVR EV++ + F LN+
Sbjct: 130 DGKLVRAATRGDGRVGENITTNVRTIANVPLSLRGEDFPQRLEVRGEVIMTRAGFDILNE 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP--SSHSELLN 254
+ G K F NPRNAAAG LRQL+PKI + L F+++ +G + P ++HS L
Sbjct: 190 AQIKKGKKPFVNPRNAAAGSLRQLDPKITAARPLLFYSYSLGLVENEQQPLGTTHSARLK 249
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
GL + E V G + + ++ KI R L Y+IDGVV+K++ ++ Q+ LGF +
Sbjct: 250 QLSDWGLPLSKELEVAQGAKECLTYFHKIGELRSQLSYDIDGVVFKVDDIAMQQTLGFVA 309
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+A+KF ++E ++ + + Q+GRTG ITPVA L P + G+T++ ATLHN+ EI
Sbjct: 310 RAPRWAIAHKFAAQEEMSTLLDVEFQVGRTGAITPVARLAPTFVGGVTVSNATLHNQDEI 369
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
R I+IGD+V++ R+G+VIP+I + + RP+D+K P CP+C+S + +E +A
Sbjct: 370 NRLGIKIGDSVIIRRAGDVIPQIVAIVADKRPDDAKDILFPESCPVCSSAVEKLEGEAVA 429
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+G + C AQRK ++HF+SRKA++I GLG K+IE+LV+A++V + D + ++ L
Sbjct: 430 RCTGG-LYCKAQRKEAMKHFASRKALDIDGLGDKLIEQLVDADMVKSPADFFALDIAPLS 488
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
++R+ K A N++ +++KSK TT ++F+Y+LGIR VGE TA+ LA +F L+ + +A
Sbjct: 489 SMERMGEKSAVNLVNSLEKSKKTTLAKFLYSLGIREVGEATAQNLAFHFLTLDAIEQADL 548
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------- 594
+ L + +G + + F + + +IS L++ G++W
Sbjct: 549 DALQAVSDVGIIVAQHVVNFFKEEHNLEVISALQEAGVHWPKIEKVAVDELPLAGQVYVL 608
Query: 595 --------LNNPNTK----GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
N K G KV +S T+ LV G+K G KL KA L +K+++E
Sbjct: 609 TGTLNVMDRNQAKAKLQSLGAKVSGSVSAKTDCLVAGEKAGSKLTKAQDLGVKVMNEDEM 668
Query: 643 VKI 645
+ +
Sbjct: 669 LAM 671
>gi|333907235|ref|YP_004480821.1| DNA ligase [Marinomonas posidonica IVIA-Po-181]
gi|333477241|gb|AEF53902.1| DNA ligase [Marinomonas posidonica IVIA-Po-181]
Length = 679
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 255/665 (38%), Positives = 386/665 (58%), Gaps = 35/665 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L ++L+ ++ AY++ D P++ D +YD+ L+ +E + P+ + DS TQ VG
Sbjct: 15 LIEQLNDYSYAYHVKDVPMVPDAEYDRQYRLLQAVEAERPDWVQADSPTQRVGEKPDNGF 74
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
V HT M+SLDN F DE + F++R+T L + I Y E K DG+A+++RYE G L
Sbjct: 75 ANVAHTVPMLSLDNAFDDESLQDFDQRVTKLLDTEQEIGYCCEPKLDGLAISIRYEDGRL 134
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
+ TRGDG GE+IT+NI ++ +PL L + PP +LEVR E+ + K F KLN+
Sbjct: 135 VRGVTRGDGLSGEDITSNIKTLYSVPLKLRTETPPAVLEVRGEIYMPKDGFDKLNQQAAE 194
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIG 260
G K F NPRNAAAG LRQL+PK+ ++ L A+ +G + G P SH E L + G
Sbjct: 195 QGEKTFVNPRNAAAGSLRQLDPKVTASRPLVMCAYAIGYVEGWQQPDSHYEGLLQLSEWG 254
Query: 261 LSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFA 320
+ + G IE+Y ++ KR L Y+IDG+VYK++ + Q +LGF +RAPR+A
Sbjct: 255 FRTNDLMTRVEGAQGCIEYYDMLSEKRAGLSYDIDGIVYKVDDIGLQNQLGFIARAPRWA 314
Query: 321 LAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQ 380
+A KF ++E +T++ I+ Q+GRTG ITPVA L+PV + G+T++ ATLHN+ EI R +Q
Sbjct: 315 IARKFPAQEEMTQVLGIDFQVGRTGAITPVARLEPVFVGGVTVSNATLHNKDEIARLGVQ 374
Query: 381 IGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSW 440
+ D VV+ R+G+VIP++ + RP DS P+ CP+C S + +E + RC+G
Sbjct: 375 VKDYVVIRRAGDVIPQVVQVLQEKRPEDSASVVFPSACPVCGSDVEQVEGEAVVRCTGGL 434
Query: 441 IECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK--NLLRLDR 498
+ C AQ K L+HF SRKAM+I GLG K+IE+LV+ +V T VD++++ + +LL ++R
Sbjct: 435 V-CGAQLKESLKHFVSRKAMDIDGLGDKLIEQLVDQELVKTPVDIFRLADQKTSLLAMER 493
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K +N+L +I+ +K T F+RFIYALGIR VGE TA+ L NYF LE + A +E L+
Sbjct: 494 MGQKSVDNLLASIEAAKQTQFNRFIYALGIREVGEATARALTNYFTELETLMNADQEALV 553
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------------- 601
+ +G + F +Q ++R I L + G+ W
Sbjct: 554 EVEDVGPIVAQHVRLFFDQEVNRTTIQGLLEAGVVWQTKQAVDQGELPLVGKTYVVTGSL 613
Query: 602 ---------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
G KV +S T+ LV G+K G KL KA L++ ++DE + +
Sbjct: 614 SQFSRDQVKEKLQALGAKVSGSVSAKTDCLVAGEKAGSKLTKAQSLDVPVIDEAGVIALF 673
Query: 647 KGFST 651
+ +
Sbjct: 674 EEYGA 678
>gi|209695779|ref|YP_002263709.1| NAD-dependent DNA ligase LigA [Aliivibrio salmonicida LFI1238]
gi|254781250|sp|B6EJQ6.1|DNLJ_ALISL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|208009732|emb|CAQ80037.1| NAD-dependent DNA ligase [Aliivibrio salmonicida LFI1238]
Length = 669
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 269/663 (40%), Positives = 389/663 (58%), Gaps = 40/663 (6%)
Query: 20 ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGEN 79
ELKK+L+ H YY+ D+P + D +YD+++ +L IE+++PE +T DS +Q VG
Sbjct: 9 ELKKQLNYHAYRYYVEDSPELPDAEYDRMMQQLLLIEKEHPEFMTVDSPSQRVGGEALGG 68
Query: 80 SKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGY 139
V H M+SLDN F+D ++ F KRI + L + E K DG+AV+L Y G
Sbjct: 69 FTQVQHEIPMLSLDNAFNDNELDSFEKRINDRLISDSVSLFCCEPKLDGLAVSLLYVDGL 128
Query: 140 LKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRY 199
L QA TRGDG GENIT N+ I IPL L + P LEVR EV + K F LN+
Sbjct: 129 LVQAGTRGDGATGENITENVRTIRCIPLTLQGEGWPTRLEVRGEVFMPKAGFDALNERAL 188
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKI 259
K F NPRNAAAG LRQL+ KI + L F+A+ VG + G + SH + +
Sbjct: 189 KRAEKPFANPRNAAAGSLRQLDSKITATRPLSFYAYSVGIIEGGELEGSHYQRFVQLKNW 248
Query: 260 GLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRF 319
GL +C E + + +YK I +R L YEIDGVV K++ +S Q++LGF +RAPR+
Sbjct: 249 GLPMCEETKQCHSLTDVKAYYKDILERRDALKYEIDGVVIKVDSISLQEQLGFVARAPRW 308
Query: 320 ALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNI 379
A+AYKF ++E LT + + Q+GRTG ITPVA L+P+ + G+T++ ATLHN EI R +
Sbjct: 309 AIAYKFPAQEELTVLNDVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHNADEIARLGV 368
Query: 380 QIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGS 439
IGDTV++ R+G+VIP+I S + + RP DSK P CP C+S++ IE ++ RC
Sbjct: 369 HIGDTVIIRRAGDVIPQIVSVVEARRPEDSKAIIYPTTCPACDSQLERIEGEVVTRCVAG 428
Query: 440 WIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRV 499
+ C AQRK L+HF SRKA+++ GLG K++E+LV+ +V T DL+K++ L LDR+
Sbjct: 429 LV-CPAQRKEALKHFVSRKALDVDGLGDKVVEQLVDKEMVETPADLFKLSAGVLTVLDRM 487
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
K A N++ A+ K+K TT SRF+Y+LGIR VGE TA LA +F+ L + AT EQL+
Sbjct: 488 GPKSAQNVVNALNKAKETTLSRFLYSLGIREVGEATAANLALHFQTLNAISSATFEQLIE 547
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK------------------ 601
+ +G K + F ++P ++ +I L+ +G+ W P+ K
Sbjct: 548 VSDVGDIVAKHILGFFSEPHNQAVIENLQLMGVNW---PDIKALDESVPQPLADKVVVLT 604
Query: 602 ------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV +SKNT+ L G+ G KL KA +L ++I++E+ +
Sbjct: 605 GTLYKLKRNEAKAALQELGAKVAGSVSKNTDILFAGEAAGSKLAKAEELGVEIMNEEQLI 664
Query: 644 KIV 646
+I+
Sbjct: 665 EIL 667
>gi|255021565|ref|ZP_05293608.1| DNA ligase [Acidithiobacillus caldus ATCC 51756]
gi|254968953|gb|EET26472.1| DNA ligase [Acidithiobacillus caldus ATCC 51756]
Length = 659
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 258/652 (39%), Positives = 391/652 (59%), Gaps = 32/652 (4%)
Query: 25 LHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVH 84
L N AYY D P++SD +YD LL EL+ +E+ +PEL DS TQ VG VH
Sbjct: 3 LEAANRAYYRDDAPVMSDAEYDALLRELRALEDAHPELRVADSPTQRVGAAPVSAFGAVH 62
Query: 85 HTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQAS 144
+ M SLDN FS+E+ + +R+ L N E KFDG++VNLRYE G L +A
Sbjct: 63 YRIPMTSLDNVFSEEEFRDWWERLRRALPEVSNPVLSGEPKFDGLSVNLRYEGGRLVRAG 122
Query: 145 TRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLK 204
TRGDG GE++T N+ IH +PL L PEL+E+R EV++ F +LN+ R G
Sbjct: 123 TRGDGVEGEDVTHNVRTIHNVPLQLQGSGWPELIELRGEVVLPVAAFRRLNRERERRGEA 182
Query: 205 KFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSIC 264
F NPRNAAAG LRQL+P+I + L FF G GE + SH +L + G S+
Sbjct: 183 PFANPRNAAAGSLRQLDPRITARRPLAFFPWGFGEC-SEPLGDSHVHILQRFATWGFSVT 241
Query: 265 GEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYK 324
+ G+++ + ++ + +R ++P+EIDG+V+K++ L+ +++LGFT+RAPR+A+A+K
Sbjct: 242 EFLRPIHGLDEALAYHADLAARRESMPFEIDGLVFKVDDLALRERLGFTARAPRWAIAWK 301
Query: 325 FLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDT 384
F + EA T ++ I +GRTG++TPVA L+PV + G+ ++RA+LHNE E+ RK++++GDT
Sbjct: 302 FPAHEASTLVEDIVASVGRTGVVTPVAQLQPVSVAGVMVSRASLHNEDEVRRKDVRVGDT 361
Query: 385 VVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECI 444
V+V R+G+VIP+I + + RP S+ +++P CP+C S+I+ + + + RC+G + C
Sbjct: 362 VLVRRAGDVIPEIVTVLRDRRPAASQPWRMPTRCPVCGSEILRLPNEVAHRCTGG-LYCP 420
Query: 445 AQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLA 504
AQR + HF+SR+AM+I GLG+K++ +LV +V T DLY ++ LL L R+ ++ A
Sbjct: 421 AQRMGAILHFASRRAMDIRGLGEKLVAQLVAQGLVKTVADLYHLDRDTLLALPRMGDRSA 480
Query: 505 NNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIG 564
+L I S+ T F+RF+YALGI VGE+TAK LA +F +LE + + E L +P +G
Sbjct: 481 QKLLDEIAGSRQTEFARFLYALGIHQVGESTAKALAQHFGDLETLMAVSAEDLQEVPDVG 540
Query: 565 STTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------LNNPNT 600
+A + F Q +R +I L G++W L+
Sbjct: 541 PVVAEAILHFFAQTHNREVIQALLAAGVHWPKVRKREGGVLQGKRLVLTGSLPHLSREAA 600
Query: 601 K------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
K GGKVV+ +S +Y++ G+ PG KL KA L I LDE F+ ++
Sbjct: 601 KEKIEAAGGKVVSAVSAQVDYVIVGEAPGSKLAKAQALGIPQLDEAAFLALL 652
>gi|157961514|ref|YP_001501548.1| NAD-dependent DNA ligase [Shewanella pealeana ATCC 700345]
gi|190359287|sp|A8H376.1|DNLJ_SHEPA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|157846514|gb|ABV87013.1| DNA ligase, NAD-dependent [Shewanella pealeana ATCC 700345]
Length = 668
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 257/663 (38%), Positives = 395/663 (59%), Gaps = 37/663 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ +L EL++HN YY+ D+P I D +YD+LL LK +E ++PE DS TQ VG
Sbjct: 8 IAQLTAELNQHNYRYYVDDSPSIPDAEYDRLLNRLKALETEHPEFCRPDSPTQRVGGEAL 67
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
+ + H M+SLDN F +++ FN+RI + K K++ Y E K DG+AV++ Y
Sbjct: 68 AKFEQIKHLKPMLSLDNVFDEQEFTAFNQRIVD--KTGKDLSYCCEPKLDGLAVSIVYRD 125
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G ++A+TRGDG GE+IT N+ I IPL L P L+EVR EV++ K F LN+
Sbjct: 126 GVFERAATRGDGQTGEDITENVRTIKSIPLTLRGDNFPPLVEVRGEVIMPHKAFDALNER 185
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPSSHSELLNW 255
G K F NPRNAAAG LRQL+ KI ++ L F+A+ +G E + SH L
Sbjct: 186 ARVKGDKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPETWELADSHYGQLEQ 245
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ G+ + E V +++ +Y I +R +L +EIDGVV K+N ++ Q LGF ++
Sbjct: 246 LRSWGVPVSQEVRGCETVAEVMAYYYDIQQRRSSLEFEIDGVVVKVNQIAHQLSLGFVAK 305
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A A+KF ++E +T ++ ++ Q+GRTG +TPVA LKPV + G+T++ ATLHN EI
Sbjct: 306 APRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIA 365
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
R +++GDT+++ R+G+VIP+I + + RP+D+K P CP+C+S++ +E + R
Sbjct: 366 RLGVKVGDTIIIRRAGDVIPQIVAVVAEKRPDDAKDIVFPAHCPVCDSEVERVEGEAVTR 425
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+++ +
Sbjct: 426 CTGGLF-CEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVESPADLFRLTASAMTM 484
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L+R+ K A ++ AI+ +K TTF+RF+YALGIR VGE TA LA YFK LE + A+ E
Sbjct: 485 LERMGMKSATKLVAAIEVAKQTTFARFLYALGIREVGEATAANLAAYFKTLEALKAASAE 544
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------------- 594
+ + + +G+ F+ QP + +I +L + GI+W
Sbjct: 545 EFIKVDDVGTIVAAHLAHFLAQPHNLEVIDKLVEAGIHWPAVEEVAEEDLSLKGQTWVLT 604
Query: 595 -----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
LN + K G KV +SKNT+ LV G G KL KA +L +K++DE+ +
Sbjct: 605 GTLTQLNRNDAKAKLQALGAKVAGSVSKNTDCLVAGAAAGSKLTKAQELGVKVIDEEALI 664
Query: 644 KIV 646
I+
Sbjct: 665 AIL 667
>gi|383458093|ref|YP_005372082.1| DNA ligase [Corallococcus coralloides DSM 2259]
gi|380733214|gb|AFE09216.1| DNA ligase [Corallococcus coralloides DSM 2259]
Length = 674
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 267/675 (39%), Positives = 401/675 (59%), Gaps = 43/675 (6%)
Query: 10 NFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLT 69
F K R L++EL HN YY+ D P ISD++YD+L+ EL+ +EE+YP+L+T DS T
Sbjct: 3 TFPKAEARARALRQELAHHNHRYYVLDAPEISDSQYDKLMRELQGLEEQYPQLVTPDSPT 62
Query: 70 QHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGI 129
Q VG E+ V HT +M+SL N F D + F++RI L++ + Y+ E K DG+
Sbjct: 63 QRVGGAAVEDFGQVVHTTQMLSLANIFDDAGLTEFDERIRKLTGLSQ-VGYVCEPKLDGL 121
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYP------PELLEVRCE 183
A++LR+E G Q +TRGDG GE++T N+ I +PL L +P P LEVR E
Sbjct: 122 AISLRFEDGRFVQGATRGDGTTGEDVTGNLRTIKSLPLEL---FPQDGVKVPRRLEVRGE 178
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
V I K+DF KLN+ R G F NPRNAAAG LRQL+P+ + L + + G+
Sbjct: 179 VFIRKEDFRKLNEKREEAGEALFANPRNAAAGSLRQLDPRETAARPLSVYLYECVPGDGV 238
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
+H+E L + + + L I Y G + + + Y + R LP+E+DG+V K++
Sbjct: 239 PAFKTHTEKLEYLRTLTLPI-NRYQHADGADGVRQRYDESLKGRHALPFEVDGMVVKVDD 297
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
+++LG S++PR+A+AYKF +E T ++ I IQ+GRTG +TPVA LKPV + G+T+
Sbjct: 298 EDLRRRLGQVSKSPRWAVAYKFPPEEESTTVEDIGIQVGRTGALTPVAHLKPVKVGGVTV 357
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
+RATLHNE E+ RKN++ GDTV V R+G+VIP+I S +LS RP DS+ F P CP+C +
Sbjct: 358 SRATLHNEDELRRKNVRKGDTVFVRRAGDVIPEIVSVVLSKRPEDSQPFTFPTHCPVCGA 417
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
E I RC+G+ C AQ ++HF+SR AM+I GLG K+ +LV + V T
Sbjct: 418 VAAKDEDGAIIRCTGA--SCPAQLVEKVRHFASRIAMDIEGLGDKLAMQLVTSGQVKTFA 475
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DL+ + +LL+L+R+ K A+N+L +I+ SK TT RF+Y+LGIRHVG++TA+ LA F
Sbjct: 476 DLFALTRDSLLKLERMGEKSADNLLASIEGSKATTQRRFLYSLGIRHVGDSTARALAEAF 535
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIY------WLNN 597
+++ +F A+ E + + +G + F +P ++ I L D G++
Sbjct: 536 PDVKSLFTASLEDISRVKDVGPVMAQVIHTFFQEPQNQAAIQALLDAGVHPAPPAVATGG 595
Query: 598 P------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLN 633
P +GGKV +S+ T+++V G+ G KL+KA +L
Sbjct: 596 PFVGKTVVLTGTMERLAREQAKEEIERRGGKVSGSVSRKTDFVVAGEDAGTKLKKAQELG 655
Query: 634 IKILDEKNFVKIVKG 648
++ILDE+ F+K+++G
Sbjct: 656 VRILDEQAFLKLLEG 670
>gi|91793866|ref|YP_563517.1| DNA ligase, NAD-dependent [Shewanella denitrificans OS217]
gi|123165936|sp|Q12L82.1|DNLJ_SHEDO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|91715868|gb|ABE55794.1| DNA ligase, NAD-dependent [Shewanella denitrificans OS217]
Length = 670
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 263/667 (39%), Positives = 393/667 (58%), Gaps = 38/667 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S + ++ L EL++HNI YY+ D P ++D YD+L+ +L +E ++PEL+ DS ++
Sbjct: 1 MSAIQLQIANLVNELNQHNIKYYVDDAPSVTDAYYDKLMQQLLALEAEHPELIQSDSPSR 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + V H M+SLDN F D FNKRIT+++ ++Y+ E K DG+A
Sbjct: 61 RVGGHALDKFSQVTHLKPMLSLDNAFEQADFEAFNKRITDKVG---TVDYVCEPKLDGLA 117
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V++ Y G ++A+TRGDG +GE+IT N+ I IP+ L PEL+EVR EV + K
Sbjct: 118 VSITYRNGQFERAATRGDGTVGEDITENVRTIKSIPMGLRGDGYPELVEVRGEVFMPKAA 177
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP--SS 248
F LN + G K F NPRNAAAG LRQL+ KI ++ L F+A+ +G + G P S
Sbjct: 178 FDALNARQQAKGDKTFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEGEVQPMEPS 237
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
H L ++ GL + E + + K+ +Y I +R L YEIDGVV K+N + Q
Sbjct: 238 HFGQLAQLKRWGLPVSQEVKLCDSLEKVYAYYDDILNRRGQLSYEIDGVVIKVNAIPKQL 297
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
LGF ++APR+A+AYKF ++E +T +++++ Q+GRTG +TPVA L+ V + G+T++ ATL
Sbjct: 298 SLGFVAKAPRWAIAYKFPAQEEMTLLESVDFQVGRTGAVTPVARLQAVFVGGVTVSNATL 357
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYI 428
HN EI R ++IGDTV++ R+G+VIP+I + + RP D++ P CP+C S + +
Sbjct: 358 HNADEIARLGVKIGDTVIIRRAGDVIPQIVAIVPEKRPQDAQNIVFPTHCPVCQSLVERL 417
Query: 429 ESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488
E +ARCSG C AQRK ++HF+SRKA+NI G+G K++E+L++ +V + DL+ +
Sbjct: 418 EGEAVARCSGGLF-CEAQRKEAIKHFASRKALNIDGMGDKIVEQLIDKELVQSPADLFGL 476
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
+ L+R++ K A ++ AI +K TT +RFIY+LGIR VGE TA LAN+FK+L
Sbjct: 477 TASMMTMLERMAMKSATKLVAAIDAAKTTTLARFIYSLGIREVGEATAANLANHFKSLAA 536
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------- 594
+ +A EQLL + +G K F +Q + ++ +L GI W
Sbjct: 537 VREAGVEQLLEVADVGEIVAKHIRHFFDQAHNLEVVDKLLAAGINWPEITAVAEDELRLK 596
Query: 595 ------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
LN K G KV ISKNT+ LV G+ G KL KA +L +K+
Sbjct: 597 GQTWVLTGTLTQLNRNEAKAQLQALGAKVAGSISKNTDCLVAGEAAGSKLAKAQELGVKV 656
Query: 637 LDEKNFV 643
+DE +
Sbjct: 657 IDETELL 663
>gi|392551248|ref|ZP_10298385.1| NAD-dependent DNA ligase [Pseudoalteromonas spongiae UST010723-006]
Length = 670
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 257/659 (38%), Positives = 387/659 (58%), Gaps = 33/659 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +LK ++ +N YY+ DNP + D +YD+L+ EL +EE P L + DS +Q VG +
Sbjct: 6 QINQLKAQIENYNYQYYVLDNPTVPDAEYDRLMRELIALEEANPALKSADSPSQKVGGMA 65
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V+H M+SLDN F + + F+KR+ + LK ++ + E K DG+AV++ YE
Sbjct: 66 LAAFEKVNHEVPMLSLDNAFDESEFYAFDKRMKDRLKDASDLAFCCEPKLDGLAVSILYE 125
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG +GENIT N+ I +PL L P LEVR EV I K F KLN+
Sbjct: 126 NGVLVRAATRGDGQVGENITENVKTIRNVPLRLRGDSIPARLEVRGEVFIDDKGFAKLNQ 185
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ G K F NPRNAAAG LRQL+PKI ++ L +A+ G + G + ++H E L
Sbjct: 186 TQQEKGDKTFANPRNAAAGSLRQLDPKITASRPLMLYAYSTGVVEGFELAATHYEQLMQL 245
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL +C E +Y I +R L YEIDGVV K+N + Q+ LGF +RA
Sbjct: 246 KEWGLPVCPEIRTADNAKDAFAYYSDILARRAALGYEIDGVVIKVNDKAIQQTLGFVARA 305
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A KF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 306 PRWAIACKFPAQEELTTLLDVEFQVGRTGAITPVARLEPVYVGGVTVSNATLHNADEIER 365
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
+ IGDTV++ R+G+VIP++ S +L RP +SK P CP+C S + I+ +ARC
Sbjct: 366 LGVHIGDTVIIRRAGDVIPQVASVVLDRRPENSKEIVFPIACPVCESHVERIDGEAVARC 425
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG + C AQRK ++HF+SRKA+++ GLG K++E+LV+ ++ T DL+ ++ ++ L
Sbjct: 426 SGGLV-CEAQRKEAIKHFASRKALDVDGLGDKVVEQLVDRKLIQTPADLFSLSQGHIESL 484
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TT ++F+Y+LGIR VGE TA+ LAN++K L+ + A+ E
Sbjct: 485 ERMGPKSAENLVAALEKAKQTTLAKFLYSLGIREVGEATAQNLANHYKTLDALQNASIEG 544
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L ++ +G K F + ++ +I L G+ W
Sbjct: 545 LQDVSDVGEIVAKHVYYFFKEEHNQEVIDALIAAGLQWPDIEEKSQDEMPLDGLTYVLTG 604
Query: 595 ----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
+ K G KV +S T+ LV G+K G KL KA L + +L E + +
Sbjct: 605 TLNQMGRSEAKAKLQALGAKVSGSVSAKTHALVAGEKAGSKLTKAQDLGVDVLTEDDML 663
>gi|110833810|ref|YP_692669.1| NAD-dependent DNA ligase LigA [Alcanivorax borkumensis SK2]
gi|123345666|sp|Q0VR01.1|DNLJ_ALCBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|110646921|emb|CAL16397.1| DNA ligase (NAD+) [Alcanivorax borkumensis SK2]
Length = 777
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 258/641 (40%), Positives = 395/641 (61%), Gaps = 11/641 (1%)
Query: 15 SFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGL 74
S + L+ +L+ + YY+ D+P + D +YD++ LK +E +YP+L+T DS TQ VG
Sbjct: 8 SLQAQSLRDQLNDWSYRYYVQDDPAVPDAEYDRVFRALKDLEAQYPDLVTADSPTQRVGD 67
Query: 75 VGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLR 134
V + + V H M+SLDN F DE++ F+KRI L +++ I+Y+AE K DG+AV+L
Sbjct: 68 VPLDAFEQVQHEVPMLSLDNAFDDEELWAFDKRIRERLDVSEIIDYVAEPKLDGLAVSLL 127
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194
YE G L +A+TRGDG GENIT N I +PL L P+ LEVR EV++ F +L
Sbjct: 128 YENGELVRAATRGDGQTGENITVNARTIRSVPLKLRGNDVPKRLEVRGEVVMPHAGFEEL 187
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N + GLK F NPRNAAAG LRQL+ +I ++ L F+A+ + +L G P +HS +L+
Sbjct: 188 NARQQEAGLKLFANPRNAAAGSLRQLDSRITASRPLEFYAYSMAQLEGWEHPPTHSAMLD 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
+ GL + E V GV L+ FY+ I KR +L Y+IDGVVYK+N Q LGF S
Sbjct: 248 ALRDWGLRVNPEIRVCHGVEALLRFYQGILEKREHLDYDIDGVVYKVNRFDWQDDLGFVS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+A+KF ++E LT + ++ Q+GRTG +TPVA L+PV + G+ ++ ATLHN EI
Sbjct: 308 RAPRWAIAHKFPAQEELTVLNGVDWQVGRTGALTPVARLEPVHVGGVIVSNATLHNIDEI 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
R +I+IGDTVVV+R+G+VIPK+ ++ RP +++ +P+ CP+C S+I+ ++A
Sbjct: 368 QRLDIRIGDTVVVYRAGDVIPKVVRALPERRPANAQGIALPSSCPVCGSEILRGHDQVVA 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+G I C QR+ ++HF+SR+AM+I GLG K+++ LV+ ++ T DLY++ + +
Sbjct: 428 RCTGGLI-CGDQRREAIKHFASRRAMDIDGLGDKLVDALVDQELITTVADLYRLKAEQVA 486
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
L+R+ K A+N++ A++ SK RF++ALGI +GE TAK LA+ F +L+ + A
Sbjct: 487 GLERMGEKSADNLIAALEASKTVGLGRFLFALGILQIGEETAKNLADCFGDLDSIRHAPL 546
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGGKVVNFISKNTN 614
LL +P +G KA F + + +I L G+ +P G F+ T
Sbjct: 547 LLLLAVPDVGLEVAKAIGAFFAESDNEAVIDGLLAQGV----SPQASGVPSAAFVKSLT- 601
Query: 615 YLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGFSTETKI 655
L + K K+L +N++ + +K+ + F T T++
Sbjct: 602 -LAQLLKSAKRL----GMNLEGIGDKSLDILGSHFRTVTEL 637
>gi|332306125|ref|YP_004433976.1| NAD-dependent DNA ligase [Glaciecola sp. 4H-3-7+YE-5]
gi|332173454|gb|AEE22708.1| DNA ligase, NAD-dependent [Glaciecola sp. 4H-3-7+YE-5]
Length = 677
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 255/663 (38%), Positives = 399/663 (60%), Gaps = 35/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+T+L ++ +N YY+ DNP + D +YD+L+ EL IE+ +P+L + DS +Q VG
Sbjct: 10 RLTQLINTINEYNYQYYVQDNPSVPDAEYDRLMRELLDIEKAHPDLRSPDSPSQKVGGAA 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F ++D+ F KRI + LK+T I + E K DG+AV++ YE
Sbjct: 70 LSAFEQVEHEVPMLSLDNAFDEDDMFAFEKRIKDRLKITSEISFSCEPKLDGLAVSILYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A+TRGDG +GENITTN+ I +PL L + P+ LEVR EV++ + F LN+
Sbjct: 130 DGKLVRAATRGDGRVGENITTNVRTIANVPLSLRGEDFPQRLEVRGEVIMTRAGFDILNE 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP--SSHSELLN 254
+ G K F NPRNAAAG LRQL+PKI + L F+++ +G + P ++HS L
Sbjct: 190 AQIKKGKKPFVNPRNAAAGSLRQLDPKITAARPLLFYSYSLGLVENEQQPLGTTHSARLK 249
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
GL + E V G + + ++ KI R L Y+IDGVV+K++ ++ Q+ LGF +
Sbjct: 250 QLSDWGLPLSKELEVAQGAKECLTYFHKIGELRSQLSYDIDGVVFKVDDIAMQQTLGFVA 309
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+A+KF ++E ++ + + Q+GRTG ITPVA L P + G+T++ ATLHN+ EI
Sbjct: 310 RAPRWAIAHKFAAQEEMSTLLDVEFQVGRTGAITPVARLAPTFVGGVTVSNATLHNQDEI 369
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
R I+IGD+V++ R+G+VIP+I + + RP+D+K P CP+C+S + +E +A
Sbjct: 370 NRLGIKIGDSVIIRRAGDVIPQIVAIVADKRPDDAKDILFPESCPVCSSAVEKLEGEAVA 429
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+G + C AQRK ++HF+SRKA++I GLG K+IE+LV+A++V + D + ++ L
Sbjct: 430 RCTGG-LYCKAQRKEAMKHFASRKALDIDGLGDKLIEQLVDADMVKSPADFFALDIAPLS 488
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
++R+ K A N++ ++ KSK TT ++F+Y+LGIR VGE TA+ LA +F L+ + +A
Sbjct: 489 SMERMGEKSAVNLVNSLGKSKKTTLAKFLYSLGIREVGEATAQNLALHFLTLDAIEQADL 548
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------- 594
+ L + +G + + F + + +IS L++ G++W
Sbjct: 549 DALQAVSDVGIIVAQHVVNFFKEEHNLEVISALQEAGVHWPKIEKIAVDELPLAGQVYVL 608
Query: 595 --------LNNPNTK----GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
N K G KV +S T+ LV G+K G KL KA L +K+++E
Sbjct: 609 TGTLNVMDRNQAKAKLQSLGAKVSGSVSAKTDCLVAGEKAGSKLTKAQDLGVKVMNEDEM 668
Query: 643 VKI 645
+ +
Sbjct: 669 LAM 671
>gi|108759370|ref|YP_633776.1| NAD-dependent DNA ligase [Myxococcus xanthus DK 1622]
gi|123074067|sp|Q1D0P7.1|DNLJ_MYXXD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|108463250|gb|ABF88435.1| DNA ligase, NAD-dependent [Myxococcus xanthus DK 1622]
Length = 672
Score = 507 bits (1305), Expect = e-140, Method: Compositional matrix adjust.
Identities = 266/672 (39%), Positives = 398/672 (59%), Gaps = 39/672 (5%)
Query: 10 NFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLT 69
+F K + R EL +EL HN YY+ D+P +SD +YD+L+ EL+ +E K+P L T DS T
Sbjct: 3 DFQKAAARARELHRELAHHNYRYYVLDSPEVSDAQYDKLMRELQDLEAKHPSLQTPDSPT 62
Query: 70 QHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGI 129
Q VG E V H M+SL N F D+ + F++RI + L I Y+ E K DG+
Sbjct: 63 QRVGGAAAEEFGEVVHRAPMISLANIFEDQGLTEFDERIRKLVGLP-GIAYVCEPKLDGL 121
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVL----NIKYPPELLEVRCEVL 185
A+ LRYE G Q +TRGDG GE++T+N+ I +P+ L ++K P ++LEVR EV
Sbjct: 122 AIALRYEKGAFVQGATRGDGTTGEDVTSNLRTIRSLPMSLFPQDDVKVP-DVLEVRGEVF 180
Query: 186 IYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM 245
I KKDF KLN+ R G F NPRNAAAG LRQL+P++ + L F + G+ +
Sbjct: 181 IRKKDFQKLNEKREEEGEPLFANPRNAAAGSLRQLDPRMTAARPLSVFLYECVPGEGVPV 240
Query: 246 PSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLS 305
+H E L + + +GL I +Y G+ + + Y R LP+E+DG+V K++
Sbjct: 241 FKTHIEKLEYLKTLGLPI-NQYRRAEGLEGVRQAYDASLKGRHELPFEVDGMVVKVDDED 299
Query: 306 TQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITR 365
+K+LG S++PR+A+AYKF +E T++ I IQ+GRTG +TPVA LKPV + G+T+ R
Sbjct: 300 QRKRLGQVSKSPRWAVAYKFPPEEESTEVMDIGIQVGRTGALTPVAHLKPVKVGGVTVAR 359
Query: 366 ATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKI 425
ATLHNE E+ RK+++ GDTV V R+G+VIP+I S +LS RP DS F+ P CP+C++
Sbjct: 360 ATLHNEDELRRKDVRKGDTVFVRRAGDVIPEIVSVVLSKRPADSAPFEFPKHCPVCDAVA 419
Query: 426 IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDL 485
E I RC+G+ C AQ ++HF+SR AM+I GLG K+ +LV+ V DL
Sbjct: 420 TKDEDGAIIRCTGA--SCPAQLVEKIRHFASRLAMDIEGLGDKLAAQLVSTGRVKAFADL 477
Query: 486 YKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN 545
Y + ++LL L+R+ +K A+N++ ++++SK TT RF+Y+LGIRHVG+ TAK LA F
Sbjct: 478 YALTKEDLLTLERMGDKSADNLIASLERSKQTTQRRFLYSLGIRHVGDATAKALAEAFPR 537
Query: 546 LECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIY------WLNNP- 598
E +F+A+ E + + +G + F +P ++ I L G+ P
Sbjct: 538 SEMLFEASLEDISRVKDVGPIMAQVIHTFFQEPQNQEAIRALLAAGVQPAAPQVATGGPF 597
Query: 599 -----------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIK 635
+GGKV +S+ T+++V G+ G KL+KA +L ++
Sbjct: 598 VGKSVVLTGAMTGMTREQAKEEVERRGGKVAGSVSRKTDFVVAGEDAGSKLKKAQELGVR 657
Query: 636 ILDEKNFVKIVK 647
ILDE+ F+++++
Sbjct: 658 ILDEQAFLQMLQ 669
>gi|309782142|ref|ZP_07676872.1| DNA ligase, NAD-dependent [Ralstonia sp. 5_7_47FAA]
gi|404377836|ref|ZP_10982936.1| DNA ligase [Ralstonia sp. 5_2_56FAA]
gi|308919208|gb|EFP64875.1| DNA ligase, NAD-dependent [Ralstonia sp. 5_7_47FAA]
gi|348612980|gb|EGY62583.1| DNA ligase [Ralstonia sp. 5_2_56FAA]
Length = 813
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 259/627 (41%), Positives = 379/627 (60%), Gaps = 43/627 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L+ EL+R+ YY+ D P + D +YD+L EL+ +E ++PEL T DS T VG
Sbjct: 16 RAAWLRAELNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPELKTPDSPTLRVGGAV 75
Query: 77 GENSKYVHHTFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAV 131
V H M+S+ + + F+ + EL L +EY AELKFDG+A+
Sbjct: 76 LPEFAAVRHVIPMLSIRTETDTTPNGARAFDASVRRELGLDDTDPPVEYAAELKFDGLAI 135
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI--KYPPELLEVRCEVLIYKK 189
LRYE GYL QA+TRGDG GE++T NI I +IPL L+ + P++LEVR EV + +
Sbjct: 136 GLRYERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGLSPVDGHVPDVLEVRGEVYMRRD 195
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM-NMPSS 248
DF KLN + G K F NPRN AAG +RQL+PK+ + L FFA+G+GE+ G MP +
Sbjct: 196 DFEKLNVRQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEVVGWKGMPGT 255
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
HS +L+ Q G + E + + G + L+EF+ I KR +LP++IDGVVYK+N L+ Q+
Sbjct: 256 HSGMLDALQAFGFPVSAERAAVKGGDGLVEFHDAIGAKRDSLPFDIDGVVYKVNSLALQR 315
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
+LGF SR PR+A+A+K+ ++EALT +++I++Q+GRTG ITPVA L PV + G+T+T ATL
Sbjct: 316 ELGFRSREPRWAVAHKYPAQEALTTVESIDVQVGRTGAITPVARLVPVFVGGVTVTNATL 375
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDS---------------KIFK 413
HNE E+ RK++++GDTVVV R+G+VIP++ S +L RP D F+
Sbjct: 376 HNEDEVRRKDVRVGDTVVVRRAGDVIPEVVSVVLDRRPLDDVPGSDLFNPRQQPKYPPFE 435
Query: 414 IPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKL 473
+P CP+C S ++ E +ARCSG C AQRK ++HF+ R+ M+I GLG++ I+ L
Sbjct: 436 LPKTCPVCGSHVVREEGEAVARCSGGLF-CSAQRKEAIRHFAGRRMMDIEGLGERYIDNL 494
Query: 474 VNANIVVTAVDLYKINFKNLLRLDR-----------------VSNKLANNILLAIQKSKL 516
V + V DLYK+ ++ L + R ++ K A N+L IQ SK
Sbjct: 495 VELDYVHGIADLYKLTLEDFLEMKRRADERDGVKPETVSAGKIATKWAENLLEGIQASKT 554
Query: 517 TTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576
+RF++ALGIRHVGE+TAK LA++ +L + +A LL +P +G+T +A F
Sbjct: 555 PPLARFLFALGIRHVGESTAKTLADWLGSLAMIRRAPAPLLLALPDVGATVAEAIADFFA 614
Query: 577 QPLHRLLISQLRDVGIYWLNN--PNTK 601
+P ++ + L + G+ PN K
Sbjct: 615 EPKNQQALDALLEAGVAPQGEHAPNAK 641
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 599 NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
G KV +SK T+Y+V G+ G KL KA +LN+K+LDE + ++K
Sbjct: 758 EAAGAKVSGSVSKKTDYVVAGEDAGSKLAKAEELNVKVLDEAGMLALLK 806
>gi|39995996|ref|NP_951947.1| NAD-dependent DNA ligase [Geobacter sulfurreducens PCA]
gi|409911441|ref|YP_006889906.1| NAD-dependent DNA ligase [Geobacter sulfurreducens KN400]
gi|81702997|sp|Q74ER9.1|DNLJ_GEOSL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|39982761|gb|AAR34220.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens PCA]
gi|298505011|gb|ADI83734.1| DNA ligase, NAD-dependent [Geobacter sulfurreducens KN400]
Length = 670
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 261/663 (39%), Positives = 392/663 (59%), Gaps = 35/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV L+ EL RHN YY D P I+D +YD L EL +E ++P+L DS TQ VG
Sbjct: 9 RVAALRTELERHNRLYYAEDRPEITDAEYDLLFRELVDLETRFPDLAAPDSPTQRVGGAP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIE--YIAELKFDGIAVNLR 134
+ + V H M+SL+N F+D ++ F+ R+ L L ++E Y+ E K DG+AV L
Sbjct: 69 LDKFEQVTHRIPMLSLENAFTDVEIADFDDRVKRFLGLHGDVEIDYVCEPKMDGLAVELV 128
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194
YE G L STRGDG +GEN+T N+ + IPL L + PPELLEVR EV + F +L
Sbjct: 129 YERGILTVGSTRGDGVVGENVTHNLKTVRGIPLRLRCEQPPELLEVRGEVYLPLAAFQRL 188
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N R G F NPRNAAAG +RQL+ +I + L F + GE+RG + ++ +E L+
Sbjct: 189 NAQREEEGEPPFANPRNAAAGSIRQLDSRITARRPLAIFCYAPGEVRGASF-AAQTEFLD 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
+ GL + + GV +++ +Y+++ +R +LPYEIDGVV K++ + Q++LG S
Sbjct: 248 RIGEWGLPVNPLIRPVKGVAEILAYYREMTERRDSLPYEIDGVVVKVDSFALQRELGEKS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R+PR+A+A KF ++A+T ++ I +GRTG+ITP A L+PV + G+T++RATLHN E+
Sbjct: 308 RSPRWAVAVKFPPRQAVTVVEDIVPSVGRTGVITPTANLRPVEVSGVTVSRATLHNWEEM 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
RK+I+IGDTVV+ R+G+VIP + + R + IP +CP C S+++ I +
Sbjct: 368 ERKDIRIGDTVVIERAGDVIPAVVKVLTEKRSGSERPLPIPAVCPECGSEVVKIPDEVAV 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC G + C AQ + + HF+SR AM++ GLG+K IE+L+ +V DLY + +
Sbjct: 428 RCMG--LSCPAQIRESIIHFASRDAMDMEGLGEKYIEQLLRLGLVKNVADLYTLTKDQFM 485
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
+ DR+ +KLA N+L AI+ SK SRFI+ALGIRHVGE TAK LA F ++E + +ATE
Sbjct: 486 QFDRMGDKLAENLLNAIEASKQRELSRFIFALGIRHVGEHTAKLLAGAFGSIENLERATE 545
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIY--------------------- 593
E+LL+I ++G ++ I F +R I ++ G+
Sbjct: 546 EELLSIREVGPQVARSIITFFRNEGNRETIRRMFKAGVRPTAEEKKVGGRFTGKTFVFTG 605
Query: 594 ---WLNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
+ P + GG +SK T+Y+V G + G KL+KA +L +++L E F+
Sbjct: 606 ALTRFSRPEAQKMVEKEGGHAAGSVSKKTDYVVAGAEAGSKLDKARQLGVRVLTEDEFLA 665
Query: 645 IVK 647
+++
Sbjct: 666 MLE 668
>gi|323702801|ref|ZP_08114460.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574]
gi|323532189|gb|EGB22069.1| DNA ligase, NAD-dependent [Desulfotomaculum nigrificans DSM 574]
Length = 669
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 258/672 (38%), Positives = 404/672 (60%), Gaps = 47/672 (6%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
++ RV EL++E++ HN YY+ DNP I+D +YDQL+ EL ++E YPEL++ DS TQ V
Sbjct: 7 EIKARVEELRREINYHNHQYYVLDNPTITDGQYDQLVQELLRLENAYPELVSPDSPTQRV 66
Query: 73 GLVGGENSK---YVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGI 129
G GE K V H M+SL N FS+ D+ F++R+ + L + +EY+ ELK DG+
Sbjct: 67 G---GEIQKGFTAVQHRVPMLSLSNAFSENDLREFDRRVRSNLP-GEEVEYVLELKIDGL 122
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
A++L YE G + +TRGDG +GE+IT N+ I IPL + P LEVR E + K+
Sbjct: 123 AISLWYEQGVFVRGATRGDGELGEDITANLRTIKAIPLRIKESIP--FLEVRGEAYMPKE 180
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F++LN+ R G F NPRNAAAG LRQL+P++ ++ L F + +G L G N P +H
Sbjct: 181 SFVRLNEAREEAGEPLFANPRNAAAGSLRQLDPRVTASRNLSVFMYAIGHLEGAN-PGTH 239
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
+ LL W + +G + Y + + ++I K +RF LPY IDG+V K+N L Q++
Sbjct: 240 ARLLGWLKDLGFRVNQHYKLCKDIEEVIRQIDKWQEQRFELPYAIDGLVIKVNSLDQQQR 299
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LG T ++PR+A+AYKF +++A++ IK I I++GRTG++TP A+L+PV + G T+++ATLH
Sbjct: 300 LGATLKSPRWAIAYKFPAEQAVSTIKDIIIRVGRTGVLTPTAILEPVQLAGTTVSKATLH 359
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
NE I +K+I+IGD +V ++G++IP++ R K F +P+ CP CN+ ++ +
Sbjct: 360 NEDIIRQKDIRIGDQALVQKAGDIIPEVVLVFPERRTGQEKPFTMPSTCPECNAPVVRLP 419
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
RC+ C A + G+ HF SR AM+I+GLG+ ++ +L+ A +V DLY +
Sbjct: 420 GEAAHRCTNK--NCPAISREGIIHFVSRGAMDIMGLGESIVNQLIMAGLVQDPADLYDLK 477
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
+++L++L+R+ + + N+L AI SK + ++ + ALGIRHVGE AK LA +F ++ +
Sbjct: 478 YEDLIKLERMGARSSQNLLNAIAASKHNSLAQLLVALGIRHVGERAAKILARHFGSMSAL 537
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK-------- 601
AT E L IP+IG ++ + + +P ++ LI +L G+ + N +
Sbjct: 538 MAATVEDLTVIPEIGPKIAESIVDYFARPENKTLIQRLDRAGVN-MEEANQQAEPGQQPL 596
Query: 602 --------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIK 635
GGKV +SK T+Y+V G+ PG K +KA +L I
Sbjct: 597 AGKTFVITGTLEGFSRQEAQRAIEELGGKVSGSVSKKTDYVVVGENPGSKYDKAQQLGIP 656
Query: 636 ILDEKNFVKIVK 647
IL+E+ FV ++K
Sbjct: 657 ILNEQEFVALLK 668
>gi|241662937|ref|YP_002981297.1| DNA ligase [Ralstonia pickettii 12D]
gi|240864964|gb|ACS62625.1| DNA ligase, NAD-dependent [Ralstonia pickettii 12D]
Length = 813
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 257/627 (40%), Positives = 380/627 (60%), Gaps = 43/627 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L+ EL+R+ YY+ D P + D +YD+L EL+ +E ++PEL T DS T VG
Sbjct: 16 RAAWLRAELNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPELKTPDSPTLRVGGAV 75
Query: 77 GENSKYVHHTFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAV 131
V H M+S+ + + F+ + EL L +EY AELKFDG+A+
Sbjct: 76 LPEFAAVRHVIPMLSIRTETDTTPNGARAFDASVRRELGLDDTDPPVEYAAELKFDGLAI 135
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI--KYPPELLEVRCEVLIYKK 189
+LRYE GYL QA+TRGDG GE++T NI I +IPL L+ + P++LEVR EV + +
Sbjct: 136 SLRYERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGLSPVDGHVPDVLEVRGEVYMRRD 195
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM-NMPSS 248
DF KLN + G K F NPRN AAG +RQL+PK+ + L FFA+G+GE+ G MP +
Sbjct: 196 DFEKLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEVAGWKGMPGT 255
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
HS +L+ Q G + E + ++G L+ F++ I KR +LP++IDGVVYK+N L+ Q+
Sbjct: 256 HSSMLDVLQAFGFPVSNERAAVAGGEGLVRFHEAIRAKRDSLPFDIDGVVYKVNSLALQR 315
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
+LGF SR PR+A+A+K+ ++EALT +++I++Q+GRTG ITPVA L PV + G+T+T ATL
Sbjct: 316 ELGFRSREPRWAVAHKYPAQEALTTVESIDVQVGRTGAITPVARLVPVFVGGVTVTNATL 375
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDS---------------KIFK 413
HNE E+ RK++++GDTV+V R+G+VIP++ S +L RP D F+
Sbjct: 376 HNEDEVRRKDVRVGDTVIVRRAGDVIPEVVSVVLDRRPMDDVPGSDLFNPQQQPKYPPFE 435
Query: 414 IPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKL 473
+P CP+C S ++ E +ARCSG C AQRK ++HF+ R+ M+I GLG++ I+ L
Sbjct: 436 LPKTCPVCGSHVVREEGEAVARCSGGLF-CSAQRKEAIRHFAGRRMMDIEGLGERYIDNL 494
Query: 474 VNANIVVTAVDLYKINFKNLLRLDR-----------------VSNKLANNILLAIQKSKL 516
V + V DLYK+ ++ L + R ++ K A N+L IQ SK
Sbjct: 495 VELDYVHGIADLYKLTLEDFLEMKRRADERDGVTPETVSAGKIATKWAENLLEGIQASKT 554
Query: 517 TTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576
+RF++ALGIRHVGE+TAK LA++ +L + +A LL +P +G+T +A F
Sbjct: 555 PPLARFLFALGIRHVGESTAKTLADWLGSLAMIRRAPAPLLLALPDVGATVAEAIADFFA 614
Query: 577 QPLHRLLISQLRDVGIYWLNN--PNTK 601
+P ++ + L + G+ PN K
Sbjct: 615 EPKNQQALDALLEAGVAPQGEHAPNAK 641
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 599 NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
G KV +SK T+Y+V G+ G KL KA +LN+K+LDE + ++K
Sbjct: 758 EAAGAKVSGSVSKKTDYVVAGEDAGSKLAKAEELNVKVLDEAGMLALLK 806
>gi|374853516|dbj|BAL56422.1| NAD-dependent DNA ligase [uncultured candidate division OP1
bacterium]
gi|374856651|dbj|BAL59504.1| NAD-dependent DNA ligase [uncultured candidate division OP1
bacterium]
Length = 689
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 270/681 (39%), Positives = 412/681 (60%), Gaps = 44/681 (6%)
Query: 8 KINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDS 67
K++ + R+ +L++E+ +HN Y++ + P ISD +YD+LL EL+++EE++P+ + S
Sbjct: 2 KLSPEEARRRIEQLREEIEQHNYNYFVLNQPTISDAEYDRLLRELQRLEEQFPQFKSPTS 61
Query: 68 LTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFD 127
TQ VG K V H+ M+SL N FSD++V F+ R+ +L T IEY+AE KFD
Sbjct: 62 PTQRVGAPPQTEFKTVRHSLPMLSLANAFSDDEVREFDARV-KKLAETDRIEYVAEPKFD 120
Query: 128 GIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYP-----PELLEVRC 182
G+AV L YE G STRGDG GE++T N+ I IPL L + P P+ LEVR
Sbjct: 121 GLAVELVYEDGIFVLGSTRGDGETGEDVTANLKTIKSIPLKL--RQPKGLPMPKKLEVRG 178
Query: 183 EVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG 242
EV + DF KLN+ R G F NPRNAAAG LRQL+PKI + LH F + VG+ G
Sbjct: 179 EVYMEIADFRKLNEEREEKGEPLFANPRNAAAGSLRQLDPKITAQRRLHMFCYDVGQTIG 238
Query: 243 MNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKIN 302
+ + ELL + GL +C Y V +++ +EFY+++ +R LPYE DGVV K+N
Sbjct: 239 IEF-HTQEELLKTLPRYGLRVCPIYKVCKNIDEALEFYREMQGRRDELPYEADGVVIKVN 297
Query: 303 CLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGIT 362
++ +G SR PR+A+AYKF K+A T++K I +Q+GRTG +TPVA+L+PV + G+T
Sbjct: 298 DFRIREIVGEVSRNPRWAIAYKFPPKQATTRVKDIIVQVGRTGKLTPVAVLEPVPLGGVT 357
Query: 363 ITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICN 422
+ ATLHN+ EI +K+I+IGD V++ R+G+VIP++ I++ R K F +P CP+C
Sbjct: 358 VQHATLHNQDEIEKKDIRIGDWVLIQRAGDVIPEVVQPIIARRTGAEKKFTMPERCPVCG 417
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
+++ + + + RC I C A+ K + H++S+ A +I GLG++ +E L+NA +V
Sbjct: 418 DRVVRLPNEVDYRCVN--ISCPARLKESILHYASKGAADIEGLGERWVEALMNAGLVKEI 475
Query: 483 VDLYKINFK--NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELA 540
DLYK+ + L+RL+R+ KLA N+L AI+KSK + +RFIY LGIRHVGE A+ LA
Sbjct: 476 PDLYKLKERVIELVRLERMGPKLAENLLNAIEKSKKISLARFIYGLGIRHVGEHLAELLA 535
Query: 541 NYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNT 600
F+ L+ + A+EE+LL + ++G T ++ F +R +I +LR+ G+ + +
Sbjct: 536 QRFRTLDALMNASEEELLQVEEVGPTVAQSIRSFFQDERNREMIRKLREAGVQIIEEISP 595
Query: 601 K-------------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKA 629
+ GG+V + +S+ T+Y+V G+ PG KLEKA
Sbjct: 596 EKAGALAGKTFVFTGTLKSFTRGQAEALVKALGGRVSSSVSRKTDYVVAGEDPGSKLEKA 655
Query: 630 IKLNIKILDEKNFVKIVKGFS 650
L + +L E+ F K++ +
Sbjct: 656 RALGVTVLSEEEFRKLIASLT 676
>gi|187928361|ref|YP_001898848.1| DNA ligase [Ralstonia pickettii 12J]
gi|254781397|sp|B2UB00.1|DNLJ_RALPJ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|187725251|gb|ACD26416.1| DNA ligase, NAD-dependent [Ralstonia pickettii 12J]
Length = 817
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 258/627 (41%), Positives = 380/627 (60%), Gaps = 43/627 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L+ EL+R+ YY+ D P + D +YD+L EL+ +E ++PEL T DS T VG
Sbjct: 20 RAAWLRAELNRYAHEYYVLDQPSVPDVEYDRLYRELEALETEHPELKTPDSPTLRVGGAV 79
Query: 77 GENSKYVHHTFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAV 131
V H M+S+ + + F+ + EL L +EY AELKFDG+A+
Sbjct: 80 LPEFAAVRHVIPMLSIRTETDTTANGARAFDASVRRELGLDDTDPPVEYAAELKFDGLAI 139
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI--KYPPELLEVRCEVLIYKK 189
NLRYE GYL QA+TRGDG GE++T NI I +IPL L+ + P++LEVR EV + +
Sbjct: 140 NLRYERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGLSPVDGHVPDVLEVRGEVYMRRD 199
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM-NMPSS 248
DF KLN + G K F NPRN AAG +RQL+PK+ + L FFA+G+GE+ G MP +
Sbjct: 200 DFEKLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEVAGWKGMPGT 259
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
HS +L+ Q G + E + ++G L+ F++ I KR +LP++IDGVVYK+N L+ Q+
Sbjct: 260 HSSMLDVLQAFGFPVSNERAAVAGGEGLVRFHEAIRAKRDSLPFDIDGVVYKVNSLALQR 319
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
+LGF SR PR+A+A+K+ ++EALT +++I++Q+GRTG ITPVA L PV + G+T+T ATL
Sbjct: 320 ELGFRSREPRWAVAHKYPAQEALTTVESIDVQVGRTGAITPVARLVPVFVGGVTVTNATL 379
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDS---------------KIFK 413
HNE E+ RK++++GDTV+V R+G+VIP++ S +L RP D F+
Sbjct: 380 HNEDEVRRKDVRVGDTVIVRRAGDVIPEVVSVVLDRRPLDDVPGSDLFNPQQQPKYPPFE 439
Query: 414 IPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKL 473
+P CP+C S ++ E +ARCSG C AQRK ++HF+ R+ M+I GLG++ I+ L
Sbjct: 440 LPKTCPVCGSHVVREEGEAVARCSGGLF-CSAQRKEAIRHFAGRRMMDIEGLGERYIDNL 498
Query: 474 VNANIVVTAVDLYKINFKNLLRLDR-----------------VSNKLANNILLAIQKSKL 516
V + V DLYK+ ++ L + R ++ K A N+L IQ SK
Sbjct: 499 VELDYVHGIADLYKLTLEDFLEMKRRADERDGVTPETVSAGKIATKWAENLLEGIQASKT 558
Query: 517 TTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576
+RF++ALGIRHVGE+TAK LA++ +L + +A LL +P +G+T +A F
Sbjct: 559 PPLARFLFALGIRHVGESTAKTLADWLGSLAMIRRAPAPLLLALPDVGATVAEAIADFFA 618
Query: 577 QPLHRLLISQLRDVGIYWLNN--PNTK 601
+P ++ + L + G+ PN K
Sbjct: 619 EPKNQQALDALLEAGVAPQGEHAPNAK 645
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 599 NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
G KV +SK T+Y+V G+ G KL KA +LN+K+LDE + ++K
Sbjct: 762 EAAGAKVSGSVSKKTDYVVAGEDAGSKLAKAEELNVKVLDEAGMLALLK 810
>gi|258514074|ref|YP_003190296.1| NAD-dependent DNA ligase [Desulfotomaculum acetoxidans DSM 771]
gi|257777779|gb|ACV61673.1| DNA ligase, NAD-dependent [Desulfotomaculum acetoxidans DSM 771]
Length = 677
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 257/666 (38%), Positives = 398/666 (59%), Gaps = 38/666 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV EL++E+ HN YY+ DNP+I D +YD+L+ EL +E+++P+LL++ S TQ VG
Sbjct: 9 RVLELRREIEEHNYNYYVMDNPVIGDAEYDRLMLELTALEQQFPDLLSEHSPTQRVGGKP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E V H M+SL N FS++++ F++R+ L + + Y+ ELK DG+AV+L YE
Sbjct: 69 KEGFTTVTHRVPMLSLANSFSEQELKDFDRRVRGALA-GEEVNYVVELKIDGLAVSLFYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G ++ +TRGDG GE+IT N+ I + L L P +LEVR EV + + F +LNK
Sbjct: 128 NGLFQRGATRGDGETGEDITENLKTIRSLSLQLKEAVP--VLEVRGEVYMSGEAFRRLNK 185
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R F NPRNAAAG LRQL+P+I ++ L F + VG G+++ S H E L +
Sbjct: 186 SREAEDQPLFANPRNAAAGSLRQLDPRITSSRQLSAFIYAVGYYEGVSL-SGHEEALRYL 244
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
Q +G + Y + + +++ + + +RF LP+ IDG+V K++ L Q KLG T+++
Sbjct: 245 QDLGFPVSRYYRKFADIEEVLAYCRDWEARRFELPFAIDGLVIKVDSLEQQLKLGATAKS 304
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+++AYKF ++A+TK+K I I +GRTG++TP ALL PV + G T++RATLHNE I
Sbjct: 305 PRWSIAYKFPPEQAVTKVKDIIINVGRTGVLTPTALLDPVRLAGSTVSRATLHNEDIIKE 364
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K++QIGDTVVV ++G +IP++ + R FK+P CP C +K++ +E +RC
Sbjct: 365 KDVQIGDTVVVQKAGEIIPEVVRVLSEKRSGGEIPFKMPQYCPDCGAKVVRLEGEAASRC 424
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C +Q + GL HF SR AM+I GLG +I +L++ ++ A DLY + +++L+ L
Sbjct: 425 TG--MACPSQLREGLIHFVSRGAMDIAGLGPAVITQLLDTGLIHDAADLYNLRYEDLVNL 482
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R K N+L A+++SK + R I+ALGIRHVGE AK LA +F +L+ + A E+
Sbjct: 483 ERFGQKSVQNLLQALEQSKKASLGRLIFALGIRHVGERAAKTLARHFGSLQNLMAAGLEE 542
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------- 601
L+ IP+IG+ + I F Q + ++ +L G+ +
Sbjct: 543 LVGIPEIGTKIAGSIITFFEQEQNLSVVDKLVRAGVNIVEKDTEASTAGSLEGKTFVLTG 602
Query: 602 -----------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
GGKV +SK+T+Y++ G+ PG K +KA+KL IK++DE F +
Sbjct: 603 TLRSFTRETAKQFIEGLGGKVTASVSKSTDYVLAGENPGSKYDKAVKLGIKVIDEAYFKE 662
Query: 645 IVKGFS 650
+ G S
Sbjct: 663 LSVGKS 668
>gi|334143827|ref|YP_004536983.1| DNA ligase [Thioalkalimicrobium cyclicum ALM1]
gi|333964738|gb|AEG31504.1| DNA ligase [Thioalkalimicrobium cyclicum ALM1]
Length = 707
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 263/692 (38%), Positives = 393/692 (56%), Gaps = 60/692 (8%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L E+ +HN AYY D PIISD +YD + +L +E +P+ +T +S TQ VG +
Sbjct: 16 LCAEISQHNQAYYHDDQPIISDAQYDLIYQQLLALEALHPDWVTSESPTQQVGFHANQAF 75
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-------------KLTKNIEYIAELKFD 127
+ V H+ M+SLDN F D+D+ F +R + L +L+ + + AE K D
Sbjct: 76 RPVKHSLPMLSLDNSFDDQDLAAFYQRALDRLLQLQHPSIISDVSQLSHALNFFAEPKLD 135
Query: 128 GIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIY 187
G+A++LRYE G L A+TRGDG GE++T N I IP L + P LLEVR EV +
Sbjct: 136 GLALSLRYESGRLVTAATRGDGETGEDVTHNARTIAAIPKRLQGDHWPALLEVRGEVFMT 195
Query: 188 KKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELR-GMNMP 246
K +LN+ + G K F NPRNAAAG LRQL+PK+ + L F+ +G GE+ ++P
Sbjct: 196 KSALAQLNEQQAAKGDKPFANPRNAAAGSLRQLDPKVTAQRQLDFYCYGWGEISPSFDLP 255
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
+ ++ +++ + G + + G++ +I +Y ++ +R +L YEIDG+VYK+ LS
Sbjct: 256 THYAGVMSLLAQWGFPVNPLGRTVIGLDAMITYYTELAEQRADLGYEIDGIVYKLADLSA 315
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q LGFT++ PR+A+A KF ++E T + I+IQ+GRTG +TPVA L PV + G+ + A
Sbjct: 316 QATLGFTAKFPRWAIARKFPAQEVWTDLLGIDIQVGRTGALTPVARLTPVAVGGVIVANA 375
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKII 426
TLHN EI RK+I+IGD V+V R+G+VIP++ ++ RP++ + F++P CP+C S +
Sbjct: 376 TLHNLDEIRRKDIRIGDKVIVRRAGDVIPEVVGPLVDQRPSNVRTFEMPPTCPVCESAVF 435
Query: 427 YIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY 486
+ RCSG + C AQ++ L+HF SRKAM+I GLG K+I +L+ A +V D Y
Sbjct: 436 KDPDKAVYRCSGG-LYCPAQQQRALEHFVSRKAMDIQGLGGKVISQLIAAKLVAHPDDFY 494
Query: 487 KINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546
+++ LL+L+R++ K A N+L AI SK TT +RFI+ALGI VGE TAK LA F L
Sbjct: 495 QLSLDELLKLERMAEKSAQNLLDAIAASKQTTLARFIFALGIPEVGEVTAKNLARNFGEL 554
Query: 547 ECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---LNNPNTK-- 601
+ + A +QLL IP +G + +F Q +R +I+ L + GI W P T
Sbjct: 555 DGLLAADADQLLAIPDVGPVVAQQIERFFAQTHNREVIAGLLNAGIQWPPLQGQPPTNST 614
Query: 602 ----------------------------------------GGKVVNFISKNTNYLVKGQK 621
G KV + +SKNT++L+ G K
Sbjct: 615 EQTAETQPQKETLFTNKTLVITGSFVGQSRTDLAALLEQMGAKVTSSVSKNTDFLIAGDK 674
Query: 622 PGKKLEKAIKLNIKILDEKNFVKIVKGFSTET 653
G KL KAI L++ ++ +I+ T
Sbjct: 675 AGSKLTKAIALDVPVITADELTRILGAADGST 706
>gi|254480787|ref|ZP_05094034.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2148]
gi|214039370|gb|EEB80030.1| DNA ligase, NAD-dependent [marine gamma proteobacterium HTCC2148]
Length = 677
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 258/669 (38%), Positives = 387/669 (57%), Gaps = 34/669 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S V +L+ +L N YY+ D+P + D +YD+ L +L+ EE++PEL+T+DS TQ
Sbjct: 4 SATQAEVLQLRTQLREWNYRYYVLDDPSVPDAEYDRYLRQLQGFEEQFPELVTEDSPTQR 63
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTK-NIEYIAELKFDGIA 130
VG V H M+SLDN F +++ F +R+ + L IEY E K DGIA
Sbjct: 64 VGSKPLSQFSQVTHEVPMLSLDNAFDATELVDFERRLRDRLGEPDLAIEYSCEPKLDGIA 123
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L Y G L++ +TRGDG GE+IT N+ I IPL L P++LEVR E+ +
Sbjct: 124 VSLLYRDGILERGATRGDGTTGEDITQNVRTIPSIPLQLRGDGYPQILEVRGEIYMPLAG 183
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F +LN+ G K F NPRNAAAG LRQL+ +I + L + VG ++G +P H+
Sbjct: 184 FDQLNRRALEKGEKVFVNPRNAAAGSLRQLDSRITAQRPLEMCCYSVGLVQGGQLPPEHA 243
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+L+ + GL I E V++GV ++Y+ + +R +LPY+IDG+VYK+N L Q +L
Sbjct: 244 AVLDCLHRWGLRINAESQVVTGVQACEQYYESLAKRRDSLPYDIDGIVYKVNRLDQQSRL 303
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF SRAPR+A+A KF ++E +T++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 304 GFVSRAPRWAIARKFPAQEEMTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHN 363
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R +++GD VVV R+G+VIPK+ S +L RP DS+ + P+ CP+CNS
Sbjct: 364 ADEIERLGLRVGDFVVVRRAGDVIPKVVSVVLDKRPGDSRAVEFPSHCPVCNSATEREPD 423
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ RC G + C AQ+KA ++HF+SR+AM+I GLG K++E++V+ ++ LY ++
Sbjct: 424 EAVIRCMGGLV-CAAQQKAAIKHFASRRAMDIDGLGDKLVEQMVDEGLLENVASLYSLHK 482
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L+ L+R+ K A+N+L A+ SK T+ RFI+ALGIR VGE TA LA +F + +
Sbjct: 483 DQLMALERMGEKSADNLLAALAASKDTSLPRFIFALGIREVGEATALNLARHFGSWPELV 542
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN-------------- 596
A+EE LL++ +G +F + + LR+ G+ W +
Sbjct: 543 AASEESLLDVDDVGPVVADHLRQFFDSTSGMAVAEALREAGVRWPDIEIAAESVLPLAGQ 602
Query: 597 ------------------NPNTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
T G KV +S T+ +V G G KL KA L ++++D
Sbjct: 603 TWVVTGKLELMGRNEAKAALQTLGAKVAGSVSAKTHCVVAGPGAGSKLAKAQDLGVEVID 662
Query: 639 EKNFVKIVK 647
E FV +++
Sbjct: 663 EITFVALLE 671
>gi|307609752|emb|CBW99264.1| DNA ligase [Legionella pneumophila 130b]
Length = 650
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 259/640 (40%), Positives = 388/640 (60%), Gaps = 35/640 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ LK+++ +++ YY+ D P++ D +YD+ L++ EE+YP+ L+ DS TQ V
Sbjct: 10 IETLKEQIRKYDYHYYVLDEPLVPDAEYDRCFKALQQYEEQYPQFLSPDSPTQRVSGTPS 69
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ +++ F KR +L + + + + E K DG+AVN+ YE
Sbjct: 70 DAFMPVAHKQPMLSLSNVFTTDELKAFIKRAIEKLDEPNQQLVFACEPKLDGLAVNMTYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG +GENIT NI I +PL L + PP+L+EVR EV I K DF N
Sbjct: 130 GGILTHAATRGDGAVGENITANIKTIASVPLRLRVSNPPKLIEVRGEVYIPKADFEAYNA 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
LG K F NPRNAAAG LRQLNP+I+ N+ L + +G+G +P+SH E LN
Sbjct: 190 RARELGEKTFANPRNAAAGSLRQLNPEISANRPLAIYCYGIGAFEDYKLPNSHLEQLNLL 249
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ G + E G+ +++Y+ + KR LP+EIDGVVYKI+ +S Q++LG+ SRA
Sbjct: 250 KEFGFRVSPETRRAVGIEGCLDYYQYMLAKRNQLPFEIDGVVYKIDSISLQQQLGYVSRA 309
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PRFA A+KF + E +T++ A++ Q+GRTG +TPVA L+PV + G+T++ ATLHN EI R
Sbjct: 310 PRFACAHKFPATEEMTRLIAVDFQVGRTGAVTPVARLEPVSVGGVTVSNATLHNFDEITR 369
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGDTV++ R+G+VIP++ S IL RP ++++ ++P CP+C S+++ IARC
Sbjct: 370 KDIRIGDTVIIRRAGDVIPEVVSVILEKRPANARMIELPKNCPVCGSEVVREADEAIARC 429
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
G + C AQ K + HF+SRKAM I GLG +I++LV+ IV DLY+++ + L L
Sbjct: 430 VGG-LYCKAQLKRMMWHFASRKAMYIEGLGSVLIDQLVDEGIVHHLADLYELDLQTLASL 488
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
R+ K A N+L A++KSK TTF+RF+YALGIR +GE A+ LA ++ ++E + AT E+
Sbjct: 489 PRMGEKSAKNLLSALEKSKKTTFNRFLYALGIREIGEVGARVLAEHYCDVEGLKAATIEE 548
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------LNNPN---------- 599
L+ + IG + F Q + +I +L +GI+W +N N
Sbjct: 549 LMTLNDIGPVAASHVVHFFAQAHNLEVIDRLLKLGIHWPKSEKIQVNQQNPFFGKTVVLT 608
Query: 600 ----------------TKGGKVVNFISKNTNYLVKGQKPG 623
G KV +S T+Y+V G + G
Sbjct: 609 GTLSTMGREEAKAKLLALGAKVSGSVSSKTDYVVAGSEAG 648
>gi|448746514|ref|ZP_21728181.1| NAD-dependent DNA ligase [Halomonas titanicae BH1]
gi|445565852|gb|ELY21960.1| NAD-dependent DNA ligase [Halomonas titanicae BH1]
Length = 681
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 261/663 (39%), Positives = 379/663 (57%), Gaps = 37/663 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ +L+ L N YY+ D P ++D YD+ L+++E ++PEL+T DS TQ VG
Sbjct: 12 INQLRAALDEANYRYYVLDEPTLTDADYDRKFQRLQQLEAEHPELVTPDSPTQRVGAAPA 71
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN-IEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN FS +D++ F +R+ L+ T + +E+ E K DG AV+L YE
Sbjct: 72 DGFPSVAHAIPMLSLDNAFSRDDILAFAERVAERLECTADGLEFTCEPKLDGAAVSLVYE 131
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +TRGDG GE IT+N+ + +PL L K P LLEVR EV++ F LN+
Sbjct: 132 QGMLVSGATRGDGRTGEGITSNLRTLRSVPLKLMGKNVPALLEVRGEVIMRHAGFEALNE 191
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSS----HSEL 252
G K F NPRNAAAG LRQL+P+I + L F A+ V + N+ S HS
Sbjct: 192 RAREEGSKVFANPRNAAAGSLRQLDPRITAKRPLEFHAYQVARIDMANLDDSVIPTHSRQ 251
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
+ + G E V+ G + ++ +++ KR L ++IDGVV K+N L Q++LGF
Sbjct: 252 MERLKDWGFRASSELKVVKGPQAVADYCEQLGEKRDGLGFDIDGVVIKVNDLRHQRELGF 311
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
+RAPR+A+A+K+ ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 312 VARAPRWAVAFKYPAQEEVTTLNDVEFQVGRTGAITPVARLEPVTVAGVTVSNATLHNAD 371
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
EI R ++ IGDTV + R+G+VIP++ S LRP D++ P CP+C S I IE
Sbjct: 372 EIKRLDVMIGDTVSIRRAGDVIPQVVSVHTELRPADAREIIFPEHCPVCGSDIERIEGEA 431
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
+ARCSG + C AQRK L+HF+SRKA++I GLG+K+I +LV+ V T L+ ++ +
Sbjct: 432 VARCSGG-LYCAAQRKEALKHFASRKALDIDGLGEKLIVQLVDLGWVETPAALFHLSVEQ 490
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
L L R+ K A N++ A++ +K TT +RFIYALGIR VGE TA LAN+F LE + A
Sbjct: 491 LQSLPRMGEKSATNLVNALETAKSTTLARFIYALGIREVGEATAANLANHFGTLEAIQAA 550
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
E L + +G F QP ++ I+ L D GI W T+
Sbjct: 551 ELEALEAVNDVGPIVAAHVHTFFRQPHNQETIAALIDAGITWQEAEVTQGPTPLEGQTWV 610
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G KV +SK T LV G+ G KL KA ++ ++++DE
Sbjct: 611 LTGSLESMTRDEGKARLQALGAKVAGSVSKKTTCLVAGEAAGSKLTKAEQMGVEVVDEAT 670
Query: 642 FVK 644
F++
Sbjct: 671 FIE 673
>gi|383933845|ref|ZP_09987288.1| DNA ligase [Rheinheimera nanhaiensis E407-8]
gi|383704844|dbj|GAB57379.1| DNA ligase [Rheinheimera nanhaiensis E407-8]
Length = 677
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 260/649 (40%), Positives = 383/649 (59%), Gaps = 36/649 (5%)
Query: 32 YYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMS 91
YY+ D P + D +YD+L EL+++E+ +PEL++ DS TQ VG V H+ M+S
Sbjct: 23 YYVLDKPTVPDAEYDRLYRELQQLEQLHPELISPDSPTQRVGAAPLTKFGQVSHSIPMLS 82
Query: 92 LDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNI 151
LDN F D + F KR+ + L +++ + E K DG+AV++RYE G L QA+TRGDG
Sbjct: 83 LDNAFDDTEFTAFCKRMADRLDSSQDFSFCCEPKLDGLAVSIRYENGVLVQAATRGDGYT 142
Query: 152 GENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRN 211
GE+IT+NI I +PL L P +LEVR EV + F +N G K F NPRN
Sbjct: 143 GEDITSNIKTIRAVPLKLKGDALPVVLEVRGEVFMPLAGFNAMNDKARAAGEKVFANPRN 202
Query: 212 AAAGILRQLNPKINKNKILHFFAHGVG---ELRGMNMPSSHSELLNWYQKIGLSICGEYS 268
AAAG LRQL+PKI + L F+A+ VG + + +SH + L + GL +C E
Sbjct: 203 AAAGSLRQLDPKITAQRPLMFYAYAVGLVEDPAALLDSNSHYQRLMQLKAWGLPVCPEIR 262
Query: 269 VLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSK 328
++ G + +Y+ I +R L YEIDGVV K++ L+ Q+ LGF +RAPR+A+A+KF ++
Sbjct: 263 LVEGAQAALGYYQDILKRRSQLAYEIDGVVIKVSDLAQQQALGFVARAPRWAIAFKFPAQ 322
Query: 329 EALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVH 388
E LT + + Q+GRTG ITPVA L+PV++ G+T++ ATLHN+ EI R I+IGD V+V
Sbjct: 323 EMLTTLLDVEFQVGRTGAITPVARLEPVVVGGVTVSNATLHNQDEIDRLGIKIGDAVIVR 382
Query: 389 RSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRK 448
R+G+VIP+I S ++ RP +++ P CP+C S + + +ARCSG C AQ K
Sbjct: 383 RAGDVIPQIVSVVVEQRPANTRDIVFPLQCPVCRSAVERVTGEAVARCSGGLF-CAAQLK 441
Query: 449 AGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNIL 508
++HF SRKAM+I GLG K++E+LV +V T D+Y+++ L+ L+R++ K A +L
Sbjct: 442 ESIKHFVSRKAMDIEGLGDKLVEQLVEQQLVKTPADIYQLDMAALVGLERMAEKSALKLL 501
Query: 509 LAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTV 568
AI +SK TT +RFIYALGIR VGE TA LAN+F +L+ + +AT EQLL + +G+
Sbjct: 502 NAIAQSKNTTLARFIYALGIREVGEATALNLANHFASLQALQQATLEQLLEVADVGAVVA 561
Query: 569 KAFIKFINQPLHRLLISQLRDVGIYW--------------------------LNNPNTK- 601
+ F + ++ +IS L GI+W + K
Sbjct: 562 EHVSGFFAEAHNQDVISALLAAGIHWPDIVKQAATEQPLAGQTLVLTGTLTSMGRDEAKA 621
Query: 602 -----GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
G KV +S T+ ++ G G KL KA +LN+ + E+ + +
Sbjct: 622 GLQRLGAKVSGSVSAKTHAVIAGDNAGSKLAKATELNVPVWSEQQMLDL 670
>gi|198283038|ref|YP_002219359.1| NAD-dependent DNA ligase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218666742|ref|YP_002425245.1| NAD-dependent DNA ligase [Acidithiobacillus ferrooxidans ATCC
23270]
gi|254781244|sp|B7J653.1|DNLJ_ACIF2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|254781245|sp|B5EP61.1|DNLJ_ACIF5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|198247559|gb|ACH83152.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218518955|gb|ACK79541.1| DNA ligase, NAD-dependent [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 671
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 265/672 (39%), Positives = 399/672 (59%), Gaps = 40/672 (5%)
Query: 7 KKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKD 66
+++N + R+ +L+ EL N AYY D+P +SD +YD L EL+ +E++ P+ + D
Sbjct: 2 ERVNHTDFE-RIQQLRAELVAANNAYYREDSPTLSDAEYDARLRELRTLEDRNPQWQSAD 60
Query: 67 SLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKF 126
S TQ VG E VH+ + SLDN F + + R+ L +++ AE KF
Sbjct: 61 SPTQRVGAAPVEVFGEVHYAIPLTSLDNVFDQDGFSDWLARVQKGLG-REDVPLSAEPKF 119
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG++VN+RY G L QA TRGDG GE++T N+ I +PL L K PELLEVR EV+I
Sbjct: 120 DGLSVNIRYIEGKLVQAGTRGDGQTGEDVTANVRTIRNVPLQLTGKDWPELLEVRGEVVI 179
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
F +LN R G F NPRNAAAG LRQL+ + + L +F G GE + +
Sbjct: 180 PVAAFRRLNGERLRAGDNPFANPRNAAAGSLRQLDSSVTAKRPLAYFPWGWGE-SSVPLG 238
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIE---FYKKINIKRFNLPYEIDGVVYKINC 303
SH ++ G + S L GV++L E ++ ++ R +P+EIDG+V+K++
Sbjct: 239 KSHIAVMERLSAWGFEVT---SYLRGVHELTECQRYFSEMQKIREGMPFEIDGLVFKVDD 295
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
L +++LGFT+RAPR+A+AYKF + E T ++ I +GRTG+ITPVA+LKPV + G+T+
Sbjct: 296 LLAREQLGFTARAPRWAIAYKFPAHEERTVVEDILASVGRTGVITPVAVLKPVQVGGVTV 355
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
+RA+LHN+ E+ RK+I++GDTV+V R+G+VIP++ I RP ++ + +P CP+C S
Sbjct: 356 SRASLHNQDEVDRKDIRVGDTVLVRRAGDVIPEVVMVIKEERPPATQPWHMPQRCPVCGS 415
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
+++ + + RC G + C AQR ++HF+SR+AM+I GLG+K++E+LV +V T
Sbjct: 416 EVLRLANESAHRCMGG-LYCPAQRMGAIRHFASRRAMDIRGLGEKLVEQLVGHGLVHTVA 474
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
D+Y ++ L L+R++++ A +L I +S+ T+ RF+YALGIR VGE TAK LA YF
Sbjct: 475 DIYHLDEAALCGLERMASRSAQKLLAEIDRSRHTSLPRFLYALGIRQVGEGTAKSLAIYF 534
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------- 594
+L+ + AT E L NIP +G ++ F QP +R +I+ LR G+ W
Sbjct: 535 GDLDPLMAATPELLQNIPDVGPIVAESVAHFFAQPHNRDVIAALRAAGVQWAVVQPQKGG 594
Query: 595 ------------LNNPNTK---------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLN 633
L+N + GGKV +S T+Y+V G+ PG K EKA KL
Sbjct: 595 RFQGMTLVLTGALDNMTREEAKTAIENAGGKVSGSVSAKTSYVVVGKDPGSKAEKAAKLG 654
Query: 634 IKILDEKNFVKI 645
+K L E F+ +
Sbjct: 655 VKQLTEAQFLAM 666
>gi|340782439|ref|YP_004749046.1| DNA ligase [Acidithiobacillus caldus SM-1]
gi|340556591|gb|AEK58345.1| DNA ligase [Acidithiobacillus caldus SM-1]
Length = 659
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 257/652 (39%), Positives = 390/652 (59%), Gaps = 32/652 (4%)
Query: 25 LHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVH 84
L N AYY D P++SD +YD LL EL+ +E+ +PEL DS TQ VG V
Sbjct: 3 LEAANRAYYRDDAPVMSDAEYDALLRELRALEDAHPELRVADSPTQRVGAAPVSAFGAVP 62
Query: 85 HTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQAS 144
+ M SLDN FS+E+ + +R+ L N E KFDG++VNLRYE G L A
Sbjct: 63 YRIPMTSLDNVFSEEEFGDWWERLRRALPEVPNPVLSGEPKFDGLSVNLRYEGGRLVLAG 122
Query: 145 TRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLK 204
TRGDG GE++T N+ IH +PL L PEL+E+R EV++ F +LN+ R G
Sbjct: 123 TRGDGVEGEDVTHNVRTIHNVPLQLQGSGWPELIELRGEVVLPVAAFRRLNRERERRGEA 182
Query: 205 KFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSIC 264
F NPRNAAAG LRQL+P+I + L FF G GE + SH ++L + G S+
Sbjct: 183 PFANPRNAAAGSLRQLDPRITARRPLAFFPWGFGEC-SEPLGDSHVQILQRFATWGFSVT 241
Query: 265 GEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYK 324
+ G+++ + ++ + +R ++P+EIDG+V+K++ L+ +++LGFT+RAPR+A+A+K
Sbjct: 242 EFLRPIHGLDEALAYHADLAARRESMPFEIDGLVFKVDDLALRERLGFTARAPRWAIAWK 301
Query: 325 FLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDT 384
F + EA T ++ I +GRTG++TPVA L+PV + G+ ++RA+LHNE E+ RK++++GDT
Sbjct: 302 FPAHEASTLVEDIVASVGRTGVVTPVAQLQPVSVAGVMVSRASLHNEDEVRRKDVRVGDT 361
Query: 385 VVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECI 444
V+V R+G+VIP+I + + RP S+ +++P CP+C S+I+ + + + RC+G + C
Sbjct: 362 VLVRRAGDVIPEIVTVLRDRRPAASQPWRMPTRCPVCGSEILRLPNEVAHRCTGG-LYCP 420
Query: 445 AQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLA 504
AQR + HF+SR+AM+I GLG+K++ +LV +V T DLY ++ LL L R+ ++ A
Sbjct: 421 AQRMGAILHFASRRAMDIRGLGEKLVAQLVEQGLVKTVADLYHLDRDTLLALPRMGDRSA 480
Query: 505 NNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIG 564
+L I S+ T F+RF+YALGI VGE+TAK LA +F +LE + + E L +P +G
Sbjct: 481 QKLLDEIAGSRQTEFARFLYALGIHQVGESTAKALAQHFGDLETLMAVSAEDLQEVPDVG 540
Query: 565 STTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------LNNPNT 600
+A + F Q +R +I L G++W L+
Sbjct: 541 PVVAEAILHFFAQTHNREVIQALLAAGVHWPKVRKREGGVLQGKRLVLTGSLPHLSREAA 600
Query: 601 K------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
K GGKVV+ +S +Y++ G+ PG KL KA L I LDE F+ ++
Sbjct: 601 KEKIEAAGGKVVSAVSAQVDYMIVGEAPGSKLAKAQALGIPQLDEAAFLALL 652
>gi|126668324|ref|ZP_01739283.1| DNA ligase, NAD-dependent [Marinobacter sp. ELB17]
gi|126627241|gb|EAZ97879.1| DNA ligase, NAD-dependent [Marinobacter sp. ELB17]
Length = 703
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 264/693 (38%), Positives = 387/693 (55%), Gaps = 58/693 (8%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV +L+ + HN YY+ D+P + D +YD+L L+ +E +YPEL T S TQ VG
Sbjct: 11 RVHQLRTTITDHNHHYYVLDDPQVPDAEYDRLFRGLQALEAEYPELATATSPTQRVGSAV 70
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL------------------------ 112
+ V H M+SLDN FS +D+ F++R+ L
Sbjct: 71 ETSFAEVIHRIPMLSLDNAFSADDLRDFDRRVRERLNRGNTAGEDSIREDSTAEEGSKEE 130
Query: 113 --KLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLN 170
K + IEY+ E K DG+AV+L Y+ G L +A+TRGDG GE+IT NI I +PL L
Sbjct: 131 DSKEERTIEYVCEPKLDGLAVSLHYQNGELVRAATRGDGYTGEDITANIRTIASVPLTLR 190
Query: 171 IKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKIL 230
P+ +EVR EV + + F +LN+ G K F NPRNAAAG LRQ + + L
Sbjct: 191 GGDFPQTVEVRGEVYMPRAGFDRLNQRLAGRGEKTFVNPRNAAAGSLRQKKSSVTARRPL 250
Query: 231 HFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNL 290
A+ V +P +H E L + G I E S+ G ++ +E Y+ + KR +L
Sbjct: 251 EMCAYSVAVTDESALPPTHWEGLQQVSEWGFRINPEMSLAIGADQCLEAYEALMAKRDSL 310
Query: 291 PYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPV 350
PYEIDG+V+K+N L Q++LGF SRAPR+A+A KF ++E LT ++++ Q+GRTG ITPV
Sbjct: 311 PYEIDGIVFKVNRLDLQQQLGFVSRAPRWAIAQKFPAQEELTVVESVEFQVGRTGAITPV 370
Query: 351 ALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSK 410
A LKPV + G+T++ ATLHN E+ R ++ IGDTV + R+G+VIPK+ + + RP D+
Sbjct: 371 ARLKPVFVGGVTVSNATLHNMDEVRRLDLHIGDTVFIRRAGDVIPKVVKVVQNKRPADAW 430
Query: 411 IFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMI 470
+ ++P CP C S ++ IE +IARCSG C AQRK ++H++SRKA++I GLG K +
Sbjct: 431 VIELPAQCPACGSDVVQIEGEVIARCSGGLF-CPAQRKEAIRHYASRKALDIEGLGDKWV 489
Query: 471 EKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRH 530
+ LV++ V T DLY++ +L L+R+ +K A+N++ AI S+ RF+YALGIR
Sbjct: 490 DILVDSKKVETIADLYRLCKADLTVLERMGDKSASNLIAAIDASRQPLLWRFLYALGIRE 549
Query: 531 VGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDV 590
VGE TAK LA YF +LE + +A E L + +G F QP ++ ++ L
Sbjct: 550 VGEATAKGLAGYFGSLEAIAEADESALQAVSDVGPIVAGHLRSFFEQPHNQEILQNLTQA 609
Query: 591 GIYWLNNPNTK-------------------------------GGKVVNFISKNTNYLVKG 619
G+ W T G KV +SK T +V G
Sbjct: 610 GVIWQTQEITAASMPLHGQTWVLTGTMEQMTRDQAKQKLEGLGAKVAGSVSKKTACVVAG 669
Query: 620 QKPGKKLEKAIKLNIKILDEKNFVKIVKGFSTE 652
+ G KL KA +L +++L E+ + +++G E
Sbjct: 670 EAAGSKLAKAQQLGVEVLSEQGLLDLLRGHDVE 702
>gi|254781417|sp|B8CN91.1|DNLJ_SHEPW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|212556271|gb|ACJ28725.1| NAD-dependent DNA ligase [Shewanella piezotolerans WP3]
Length = 668
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 260/665 (39%), Positives = 394/665 (59%), Gaps = 37/665 (5%)
Query: 16 FRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLV 75
+ EL ++L+ HN YY+ DNP I D +YD+LL L ++E + PE DS TQ VG
Sbjct: 6 LEILELTQQLNLHNYHYYVDDNPTIPDVEYDRLLKRLIELETQSPEFAKADSPTQRVGGE 65
Query: 76 GGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRY 135
+ + H M+SLDN F + + F+ RIT+ K+ + Y E K DG+AV++ Y
Sbjct: 66 ALAKFEQITHLKPMLSLDNVFDETEFNGFHSRITD--KVGTALSYCCEPKLDGLAVSIVY 123
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
G ++A+TRGDG GENIT N+ I IPL L P L+EVR EV++ K F LN
Sbjct: 124 RDGVFERAATRGDGQTGENITENVRTIKSIPLKLRGDNFPPLVEVRGEVIMPHKAFNALN 183
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPSSHSELL 253
+ G K F NPRNAAAG LRQL+ KI ++ L F+A+ +G E + SH L
Sbjct: 184 ERARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPESWELADSHYGQL 243
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
+ G+ + E V V +++++Y I +R +L +EIDGVV K+N ++ Q LGF
Sbjct: 244 EQLRSWGVPVSQEVKVCDSVTEVMDYYNDIQQRRSSLDFEIDGVVLKVNQIAHQLSLGFV 303
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
++APR+A A+KF ++E +T ++ ++ Q+GRTG +TPVA LKPV + G+T++ ATLHN E
Sbjct: 304 AKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADE 363
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
I R +++GDT+++ R+G+VIP+I + + RP+D++ P CP+C+S++ IE +
Sbjct: 364 IARLGVKVGDTIIIRRAGDVIPQIVAIVADKRPDDAQDIVFPERCPVCDSEVERIEGEAV 423
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
ARCSG C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+K+ +
Sbjct: 424 ARCSGGLF-CEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVESPADLFKLTASAM 482
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
L+R+ K A ++ AI+ +K TTF+RF+YALGIR VGE TA LA YFK L+ + A+
Sbjct: 483 TMLERMGMKSATKLVAAIEVAKETTFARFLYALGIREVGEATAANLAAYFKTLDALKGAS 542
Query: 554 EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------- 594
E+ + + +G+ F+ QP + +I +L VG+ W
Sbjct: 543 AEEFIKVDDVGAIVAAHLAHFLAQPHNLEVIDKLIAVGVSWPAIEEVAEEDLSLKGQTWV 602
Query: 595 -------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
LN + K G KV +SKNT+ LV G G KL KA +L +K++DE+
Sbjct: 603 LTGTLTQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGAAAGSKLTKAQELGVKVIDEEA 662
Query: 642 FVKIV 646
+ I+
Sbjct: 663 LIAIL 667
>gi|334703650|ref|ZP_08519516.1| DNA ligase, NAD-dependent [Aeromonas caviae Ae398]
Length = 668
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 265/669 (39%), Positives = 385/669 (57%), Gaps = 34/669 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S + R +L + L + YY+ DNP + D +YD+L+ EL +E ++PEL T S +
Sbjct: 1 MSDILSRHRQLCELLTEYGHQYYVLDNPTVPDAEYDRLMRELIALEAEHPELKTPASPSV 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG K V H M+SLDN FS E++ F +R+++ LK + E K DG+A
Sbjct: 61 RVGGQPLTAFKQVRHEIPMLSLDNVFSSEELQAFEQRMSDRLKREVTFTFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L Y G L QA+TRGDG GE IT N+ I IPL L + P LEVR EV + K
Sbjct: 121 VSLLYVDGQLVQAATRGDGTTGEEITENVRTIKAIPLTLRGQGWPARLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F +N+ G K F NPRNAAAG LRQL+ +I ++ L F+A+GVG + G + SH
Sbjct: 181 FEAMNRDALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYGVG-VGGDELGDSHF 239
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
LN + GL + E + G F+ I +R +LPYEIDGVVYK++ ++ Q++L
Sbjct: 240 GRLNQLKAWGLPLSPEVKLKEGAAGCQAFHDDILARRGDLPYEIDGVVYKVDDIALQQEL 299
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A A+KF ++E +T ++ + Q+GRTG ITPVA LKPV + G+T++ ATLHN
Sbjct: 300 GFVARAPRWATAHKFPAEEEMTALENVEFQVGRTGAITPVAKLKPVFVGGVTVSNATLHN 359
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + IGDTV+V R+G+VIP++ + + + RP D++ P CP+C S + +E
Sbjct: 360 ADEIARLGVMIGDTVIVRRAGDVIPQVVAVVEAQRPADARAILFPTECPVCGSAVERLEG 419
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARCSG C AQR A ++HF++R+AM++ GLG K++E+LV+ +V T DL+ +N
Sbjct: 420 EAVARCSGGLF-CEAQRAAAIKHFAARRAMDVDGLGDKIVEQLVDKGLVKTPADLFSLNA 478
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ AI ++ TT RF++ALGIR VGE TA LAN+F L+ +
Sbjct: 479 IQLAGLERMGQKSALNLVAAIDAARSTTLPRFLFALGIREVGEATALSLANHFLTLDALR 538
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
A+ EQLL +P +G K F+ QP + ++ L GI+W
Sbjct: 539 AASVEQLLEVPDVGDIVAKHVYYFLRQPHNIEVLDALLAAGIHWPVIEKKEASDQPFAGK 598
Query: 595 ----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
L+ + K G KV +S T+ LV G+ G KL KA +L I +
Sbjct: 599 TFVLTGTLTALSRNDAKAALQALGAKVAGSVSAKTDVLVAGEAAGSKLAKAQELGITVWT 658
Query: 639 EKNFVKIVK 647
E ++
Sbjct: 659 EAELQAAIQ 667
>gi|422349842|ref|ZP_16430731.1| DNA ligase, NAD-dependent [Sutterella wadsworthensis 2_1_59BFAA]
gi|404658051|gb|EKB30931.1| DNA ligase, NAD-dependent [Sutterella wadsworthensis 2_1_59BFAA]
Length = 771
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 261/696 (37%), Positives = 397/696 (57%), Gaps = 51/696 (7%)
Query: 9 INFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSL 68
I S+ R+ EL+K + + Y++ DNP + D +YD+ ELK +E ++PE + S
Sbjct: 24 IELSRAPARMRELEKRVETWDYEYFVLDNPSVPDAEYDRTFNELKALEARFPEWKSPASP 83
Query: 69 TQHVGLVGGENSKYVHHTFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAE 123
T VG + V H M+S+ + FS E F++R+ +EL L + Y E
Sbjct: 84 TTRVGGAVRSDLAKVVHAVPMLSIHTETDFSSEGAAAFDRRVRSELGLADEDPAVAYDCE 143
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LKFDG+A NLRYE G L QA+TRGDG+ GE++T N I IPL L +P ++LEVR E
Sbjct: 144 LKFDGLATNLRYEKGVLVQAATRGDGSAGEDVTANARTIRTIPLRLEGDFP-DVLEVRGE 202
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
V++++ DF LN+ + G K F NPRNAAAG LRQL+P + + LHF+A+ +GE+ G
Sbjct: 203 VIMHRDDFEALNRRQAEEGQKTFVNPRNAAAGSLRQLDPAVTARRTLHFYAYALGEVSGG 262
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
+ +E+L+ +G + + G L F+ ++ R LP++IDGVVYK++
Sbjct: 263 EFAPTQTEVLDRLASLGFPVADVRRRVEGPTALAAFHDEVAEIRHTLPFDIDGVVYKVDS 322
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
L Q++LGF +R PR+A A+K+ +EALT +AI+IQ+GRTG +TPVA LKPV + G+T+
Sbjct: 323 LELQRELGFIAREPRWACAHKYPPEEALTVCEAIDIQVGRTGKLTPVARLKPVFVGGVTV 382
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
+ ATLHNE I +++ GDTVVV R+G+VIP++ + RP + F +P++CP C S
Sbjct: 383 SNATLHNEDHIAGLDLRPGDTVVVRRAGDVIPEVVRVVHERRPEGTVPFAMPSVCPACGS 442
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
I E RC+G + C +Q K L HF+SR+AM I GLG+K++ LV+ +V +
Sbjct: 443 ATIRDEEEKDTRCTGG-LYCPSQMKLSLVHFASRRAMGIDGLGEKIVNMLVDEGLVKSPA 501
Query: 484 DLYKINFKNLLR-----------LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVG 532
D++ + ++L+ + R+ K A+N+L +I K+K TTF+RFI+ALG RHVG
Sbjct: 502 DIFTLKPEDLIAPTTATKDLEKPVKRMGPKAASNLLESIGKAKHTTFARFIFALGCRHVG 561
Query: 533 ETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI 592
E TA LA +F L + A E L + +G ++ F+ +P +R +I L G+
Sbjct: 562 EATALSLAQHFCTLANLEAADVEALTKVDDVGEIIAESIHAFLKEPHNRTVIEALVASGV 621
Query: 593 YW---------------------------LNNPNTK------GGKVVNFISKNTNYLVKG 619
W L K G KV +SK T+++V G
Sbjct: 622 VWPVVEPRPAAEASEVAGKTFVLTGTLPTLTRDEAKDRLIAAGAKVSGSVSKKTDFVVAG 681
Query: 620 QKPGKKLEKAIKLNIKILDEKNFVKIVKGFSTETKI 655
+ G KLEKA L +K++DE+ + +++G + K+
Sbjct: 682 AEAGSKLEKAQTLGVKVIDEETLLAMLEGGVSSEKL 717
>gi|92112835|ref|YP_572763.1| NAD-dependent DNA ligase [Chromohalobacter salexigens DSM 3043]
gi|122990589|sp|Q1QZP4.1|DNLJ_CHRSD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|91795925|gb|ABE58064.1| DNA ligase, NAD-dependent [Chromohalobacter salexigens DSM 3043]
Length = 691
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 260/660 (39%), Positives = 381/660 (57%), Gaps = 33/660 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L ++L N YY+ D+P I+D +YD LL EL+ +E ++PEL T DS TQ VG
Sbjct: 11 RADTLHQQLDDANYQYYVEDDPRITDAEYDALLRELQSLEAEHPELKTPDSPTQRVGAAP 70
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN-IEYIAELKFDGIAVNLRY 135
E + V H M+SLDN F D ++ F KR+ ++L+ + + + E K DG+AV L Y
Sbjct: 71 AERFEEVTHAVPMLSLDNAFDDAELAAFVKRVADKLECDGDTLAFCCEPKLDGLAVALVY 130
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
E G L Q +TRGDG GE++T N+ I IPL L P L+EVR EV + F LN
Sbjct: 131 ENGRLVQGATRGDGRTGEDVTLNLRTIRSIPLKLRGDSIPPLIEVRGEVYMRHSGFEALN 190
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
G K F NPRNAAAG LRQL+ I + L F A+ V L G + SHS+ L
Sbjct: 191 DRARENGDKVFANPRNAAAGSLRQLDSSIAAARPLEFCAYQVARLEGEDDAHSHSDYLKR 250
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ +G V+ G +I+F ++ +R L Y+IDG V K++ L Q++LGF SR
Sbjct: 251 LRTLGFRTSPLLDVVKGERGVIDFCHRLGEQRNGLDYDIDGAVIKVDSLRDQRELGFVSR 310
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A+AYK+ ++E T + + Q+GR G +TPVA L+PV + G+T+ ATLHN EI
Sbjct: 311 APRWAIAYKYPAQEQTTTLNDVVFQVGRVGTLTPVAKLEPVQVAGVTVANATLHNMDEIE 370
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
R ++IGDTV+V R+G+VIP+I + S RP ++ ++P CP+C S+ +E + AR
Sbjct: 371 RLGVRIGDTVIVRRAGDVIPQIVGVVESQRPATTRAIEMPEHCPVCGSQTERLEGEVAAR 430
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
CSG C AQRK L+HF+SR+A++I GLG+K+I+ LV V T DL+++ + L
Sbjct: 431 CSGGLF-CPAQRKEALKHFASRRALDIDGLGEKLIDLLVEREWVKTPADLFRLEAERLAE 489
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L R++ K ANN++ A++ +K TT +RFIYA+GIR VGE TA LA +F +L+ + +A+ E
Sbjct: 490 LPRLAEKSANNLVNALEAAKRTTLARFIYAIGIREVGEATAASLARHFGSLQALSEASLE 549
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------------- 594
L + +G + F QP ++ + L+ VG+ W
Sbjct: 550 ALEAVEDVGPVVARHIHTFFRQPHNQETLEDLQGVGVTWEEVEIAGRPQPLAGQTWVLTG 609
Query: 595 ----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
+ + K G KV +SK T +V G+ G KLEKA L ++++DE+ F++
Sbjct: 610 TLESMTRDDGKARLQALGAKVSGSVSKKTAGVVAGEAAGSKLEKAQNLGVEVIDEREFLQ 669
>gi|77360026|ref|YP_339601.1| NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis TAC125]
gi|123730523|sp|Q3IKB8.1|DNLJ_PSEHT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|76874937|emb|CAI86158.1| NAD-dependent DNA ligase [Pseudoalteromonas haloplanktis TAC125]
Length = 673
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 265/672 (39%), Positives = 397/672 (59%), Gaps = 41/672 (6%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S +S ++ L+ L +H+ YY+ D P I D +YD+LL +L +E ++PEL+T DS TQ
Sbjct: 3 SSISEQINHLRSTLEQHSYNYYVLDTPSIPDAEYDRLLQQLSALETQHPELITADSPTQK 62
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + V H M+SLDN FS+++ I FN+RI L T+ + + E K DG+AV
Sbjct: 63 VGGAALSKFEQVAHQVPMLSLDNAFSEDEFIAFNRRIKERLMSTEELTFCCEPKLDGLAV 122
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
++ Y G L QA+TRGDG GEN+T N+ I +PL L P LEVR EV + F
Sbjct: 123 SIIYRDGVLVQAATRGDGLTGENVTQNVKTIRNVPLKLRGSDYPAELEVRGEVFMDNAGF 182
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
K N G K F NPRNAAAG LRQL+ KI + L F+A+ G + ++ H +
Sbjct: 183 EKFNIEAEKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIAEDHYQ 242
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
L GL +C E ++ G + +Y I +R L YEIDGVV KIN + Q++LG
Sbjct: 243 QLEKLTDWGLPLCPETKLVEGPQAALAYYTDILTRRGELKYEIDGVVIKINQKALQERLG 302
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+AYKF ++E +TK+ + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 303 FVARAPRWAIAYKFPAQEEITKLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNG 362
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI R +++GDTV++ R+G+VIP+IT +L RP+D++ + P CPIC+S + +E
Sbjct: 363 DEIARLGVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFPVTCPICDSHVEKVEGE 422
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC+G + C AQRK ++HF+SRKA++I GLG K++++LV+ ++ T DL+ +
Sbjct: 423 AVARCTGGLV-CPAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPADLFILKQG 481
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L+R+ K A N++ A+Q +K TT ++F+Y+LGIR GE T + LAN+F LE +
Sbjct: 482 HFESLERMGPKSAKNLVTALQDAKATTLAKFLYSLGIREAGEATTQNLANHFLTLENVIN 541
Query: 552 ATEEQLLNIPKIG---STTVKAFIKFINQPLHRL-LISQLRDVGIYW--LNNPNTK---- 601
A+ + L + +G +T V++F F Q H L +++ L + GI W L P+ +
Sbjct: 542 ASIDSLTQVSDVGEIVATHVRSF--FAEQ--HNLDVVNALVEQGINWPELTPPSAQEQPL 597
Query: 602 --------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIK 635
G KV +S T+ LV G+K G KL KA L I
Sbjct: 598 AGLVYVLTGTLNTLNRNDAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGID 657
Query: 636 ILDEKNFVKIVK 647
+L E++ + +++
Sbjct: 658 VLTEEDLINLLE 669
>gi|222055066|ref|YP_002537428.1| NAD-dependent DNA ligase [Geobacter daltonii FRC-32]
gi|254781339|sp|B9M861.1|DNLJ_GEOSF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|221564355|gb|ACM20327.1| DNA ligase, NAD-dependent [Geobacter daltonii FRC-32]
Length = 669
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 268/672 (39%), Positives = 406/672 (60%), Gaps = 35/672 (5%)
Query: 9 INFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSL 68
++ + R+ EL +E++RHN YY+ D P I+D +YD LL EL+++E+++P+L+T DS
Sbjct: 1 MDRTAAQLRIQELHREINRHNYLYYVEDRPEITDAEYDLLLRELQQLEKEFPDLVTADSP 60
Query: 69 TQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKL--TKNIEYIAELKF 126
TQ VG + V H M+SL+N F++ ++ F++RI L L K IEY+ E K
Sbjct: 61 TQRVGAAPLDKFNQVSHRLPMLSLENAFNEGEMRDFDERIKRYLGLPMAKEIEYVCEPKM 120
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+AV L YE G L STRGDG +GE++T N+ + IPL L+ PP L+EVR EV +
Sbjct: 121 DGLAVELIYEEGSLTFGSTRGDGYVGEDVTQNLKTVKSIPLRLHCSPPPSLVEVRGEVYL 180
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
F KLN R GL F NPRNAAAG LRQL+P+I + L F + G + G
Sbjct: 181 GLAPFQKLNMDREEAGLPPFANPRNAAAGSLRQLDPRITARRPLSIFCYAPGLVEGYEF- 239
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
+S S++L + GL + ++G++ ++ +Y++I R +LPYEIDGVV K++
Sbjct: 240 TSQSQMLATLPQWGLPVNPLIKKVAGIDAVLAYYREIGETRESLPYEIDGVVIKVDSFDL 299
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q+ LG +R+PR+A+A+KF ++A+T ++ I Q+GRTG+ITPVA LKPV + G+ ++RA
Sbjct: 300 QRDLGEKTRSPRWAIAWKFPPRQAVTVVEDIVPQVGRTGVITPVAHLKPVEVSGVMVSRA 359
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKII 426
TLHN E+ +K+I+ GDTVVV R+G+VIP + + R +++ +P CP C S+I+
Sbjct: 360 TLHNWEEMEKKDIRKGDTVVVERAGDVIPAVVKVMTEKRLEGAELLAVPAACPECGSEIV 419
Query: 427 YIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY 486
I + RC G + C AQ + + HF+SR AM+I G+G K +E+L+ +V T DLY
Sbjct: 420 KIPGEVAIRCLG--LTCPAQIRETIIHFASRHAMDIEGMGDKYVEQLLRLELVKTVADLY 477
Query: 487 KINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546
+ K+ +R +R+ +KLA N+L AI+ SK SRFI+ALGIRHVGE TAK LA+ F ++
Sbjct: 478 YLTKKDFMRFERMGDKLAENLLNAIEASKHRELSRFIFALGIRHVGEHTAKLLASAFGSV 537
Query: 547 ECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL----------- 595
E + KATEE+LL+I ++G ++ F P +R +I ++ G+
Sbjct: 538 EHLEKATEEELLSIREVGPQVAQSVRTFFRNPANREVIERMFAAGVRPAVEEKRLGGRFT 597
Query: 596 -------------------NNPNTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
N +GG +SK T+Y+V G + G KL+KA +L + +
Sbjct: 598 GKTFVFTGALTRFTRDDAKNMVENEGGHAAGSVSKKTDYVVAGAEAGSKLDKARQLGVNV 657
Query: 637 LDEKNFVKIVKG 648
L E F+K+++G
Sbjct: 658 LTEDEFLKMLEG 669
>gi|359393855|ref|ZP_09186908.1| DNA ligase [Halomonas boliviensis LC1]
gi|357971102|gb|EHJ93547.1| DNA ligase [Halomonas boliviensis LC1]
Length = 677
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 258/659 (39%), Positives = 376/659 (57%), Gaps = 33/659 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+T+L+ L N YY+ D P ++D YD+ L+++E ++PEL+T DS TQ VG
Sbjct: 12 ITQLRAALDEANYRYYVLDEPTLTDADYDRKFQRLQQLESEHPELVTTDSPTQRVGAAPA 71
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-KNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN FS +D+ F +R+ L+ ++E+ E K DG AV+L YE
Sbjct: 72 DGFPSVAHAIPMLSLDNAFSSDDIHAFAERVAERLECAADDVEFTCEPKLDGAAVSLVYE 131
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +TRGDG GE IT+N+ + +PL L K P LLEVR EV++ F LN+
Sbjct: 132 QGVLVSGATRGDGRTGEGITSNLRTLRSVPLKLMGKNVPALLEVRGEVIMRHAGFEALNE 191
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L F A+ L ++HS+L+
Sbjct: 192 RAREEGSKVFANPRNAAAGSLRQLDPRITAKRPLEFHAYQAARLEPDLGDTAHSDLMARL 251
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+G E ++ G + ++ +++ KR L ++IDGVV K N L Q++LGF +RA
Sbjct: 252 STLGFRASSELQIVKGPQAVADYCEQLGEKRDGLGFDIDGVVIKANDLRYQRELGFVARA 311
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 312 PRWAVAFKFPAQEEVTTLNDVEFQVGRTGAITPVARLEPVTVAGVTVSNATLHNADEIKR 371
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++ IGDTV + R+G+VIP++ S LRP D+K+ P CP+C S I +E +ARC
Sbjct: 372 LDVMIGDTVSIRRAGDVIPQVVSVHTELRPADAKVIVFPEHCPVCGSDIERLEGEAVARC 431
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG + C AQRK L+HF+SRKA++I GLG+K+I +LV+ + V T L+ + + L L
Sbjct: 432 SGG-LYCAAQRKEALKHFASRKALDIDGLGEKLIVQLVDLDWVGTPAALFHLTVEQLKSL 490
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
R+ K A N++ A++ +K TT + FIYALGIR VGE TA LAN+F L+ + A E
Sbjct: 491 PRMGEKSATNLVNALETAKSTTLACFIYALGIREVGEATAANLANHFGTLDAIQDAELEA 550
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------- 601
L + +G F QP ++ I+ L D GI W T+
Sbjct: 551 LEAVNDVGPIVAAHVHTFFRQPHNQETIAALIDAGITWQEAEVTQGPKPLEGQTWVLTGS 610
Query: 602 ----------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
G KV +SK T LV G+ G KL KA ++ + ++DE F++
Sbjct: 611 LESMTRDEGKARLQALGAKVAGSVSKKTTCLVAGEAAGSKLTKAEQMGVDVVDEAIFIE 669
>gi|157374877|ref|YP_001473477.1| DNA ligase (NAD(+)) [Shewanella sediminis HAW-EB3]
gi|190359288|sp|A8FU26.1|DNLJ_SHESH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|157317251|gb|ABV36349.1| DNA ligase (NAD(+)) [Shewanella sediminis HAW-EB3]
Length = 670
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 256/665 (38%), Positives = 389/665 (58%), Gaps = 37/665 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ +L L+ HN YY+ D P + D +YD+L+ LK++E + PEL DS TQ VG V
Sbjct: 8 IKQLTSVLNEHNYRYYVDDAPSVPDAEYDRLINRLKQLEAENPELCLPDSPTQRVGGVAL 67
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
+ H M+SLDN FS+++ F KRI++ K ++ + E K DG+AV++ Y
Sbjct: 68 AKFNQITHLKPMLSLDNVFSEDEFDAFYKRISD--KTSETPTFCCEPKLDGLAVSILYRD 125
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G ++A+TRGDG++GE+IT N+ I IPL L P LLEVR EV++ KK F LN
Sbjct: 126 GVYERAATRGDGSVGEDITENVRTIRSIPLKLRGSDFPPLLEVRGEVIMPKKAFDSLNDR 185
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP--SSHSELLNW 255
G K F NPRNAAAG LRQL+ KI ++ L F+A+ +G + + P H E L
Sbjct: 186 ARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPESWPLGKGHHEQLMQ 245
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ G + E + V ++++Y I +R L YEIDGVV K++ + Q +LGF ++
Sbjct: 246 LKSWGFPVSSEVKLCGDVKTVLDYYADILERREALDYEIDGVVIKVDSIEHQLQLGFVAK 305
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A A+KF ++E +T ++ ++ Q+GRTG +TPVA LKPV + G+T++ ATLHN EI
Sbjct: 306 APRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIA 365
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
R +++GDTV+V R+G+VIP++ + + RP + P CP+C+S + E +AR
Sbjct: 366 RLGVKVGDTVIVRRAGDVIPQVVAIVAEKRPVSANDILFPQTCPVCDSMVERTEGEAVAR 425
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G C AQRK ++HF+SRKA+N+ G+G K++E+L++ +V + DL+++ +
Sbjct: 426 CTGGLF-CEAQRKEAIKHFASRKALNVDGMGDKVVEQLIDKELVASPADLFRLTASAMTM 484
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
LDR+ K A ++ AI+ +K TTF+RF+Y LGIR VGE TA LANYFKNL+ + A +
Sbjct: 485 LDRMGMKSATKLVAAIEDAKQTTFARFLYGLGIREVGEATAANLANYFKNLDKLKSADAD 544
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------------- 594
+ + + +G+ + F QP + ++ L G++W
Sbjct: 545 EFIKVDDVGAIVAQHLTYFFAQPHNLEVVDNLVQAGVHWPEIEEVAEEALSLKGQTWVLT 604
Query: 595 -----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
LN + K G KV +SKNT+ LV G+ G KL KA L +K+LDE +
Sbjct: 605 GTLTKLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQDLGVKVLDEDGLL 664
Query: 644 KIVKG 648
++ G
Sbjct: 665 AVLAG 669
>gi|88800009|ref|ZP_01115580.1| DNA ligase, NAD-dependent [Reinekea blandensis MED297]
gi|88777287|gb|EAR08491.1| DNA ligase, NAD-dependent [Reinekea sp. MED297]
Length = 674
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 250/665 (37%), Positives = 389/665 (58%), Gaps = 32/665 (4%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
++L R L +++ R++ YY+ + I D +YD+L+ ELK+IE ++P+ +T S TQ
Sbjct: 1 MTELHDRYQALIQQIRRYDHEYYVLNESAIPDVEYDRLMEELKRIESEHPQWVTPQSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
V + V H M+SLDN F+ +D+ F KR+ + L IE+ E K DGIA
Sbjct: 61 RVAGAPQAGFETVEHRMPMLSLDNAFNHDDLGAFVKRLKDRLNDPSPIEFACEPKLDGIA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L YE G+L + +TRGDG GE+IT N+ I IPL L PE+LEVR E+ + K
Sbjct: 121 VSLLYEQGHLVRGATRGDGTTGEDITANVRTIRSIPLSLQGDGWPEVLEVRGEIYMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F ++N G K F NPRNAA+G LRQL+ ++ + L + VG G +P +
Sbjct: 181 FERMNDEARERGDKVFVNPRNAASGSLRQLDSRLTATRPLEMCCYSVGVFEGGTLPDTQY 240
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+L+ + + GL I E ++++ V L+++Y ++ KR LPYEIDG+VYK+N Q++L
Sbjct: 241 QLMQKFSEWGLKINPEMALVTDVQGLLDYYDQLEQKRNGLPYEIDGIVYKVNSFGLQRRL 300
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF SRAPR+A+A KF ++E +T + + Q+GRTG +TPVA L+PV + G+T++ ATLHN
Sbjct: 301 GFVSRAPRWAIARKFPAQEEVTTLLDVEFQVGRTGALTPVARLEPVFVGGVTVSNATLHN 360
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R ++ IGD V+V R+G+VIP++ S+ R +++ P CP C SK+ +
Sbjct: 361 MDEIERLDVHIGDRVIVRRAGDVIPQVVKSLAEDRSPEARPITAPEECPECGSKVDRVAG 420
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ RC+G I C AQR+ L+HF SRKAM+I G G+K+++ L+ N + A D++++
Sbjct: 421 EAVMRCTGGMI-CSAQRREALKHFVSRKAMDIDGFGEKIVDALLAGNKIHAASDIFELTQ 479
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
+ + L+R+ +K A N++ AI ++ TT +RFI+ALGIR VGETTA+ LA +F +E +
Sbjct: 480 EEVSALERMGDKSAANLIAAIDAARETTLARFIFALGIREVGETTARNLAMHFGTIEKLM 539
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNN-PNTK-------- 601
ATE QLL++ +G + + ++ +R+ I +L +G+ W + P+
Sbjct: 540 SATEAQLLDVEDVGPKVAAHVVNYFSEEQNRIEIQRLIALGVTWDDPIPDQSASVLAGQT 599
Query: 602 ----------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
G KV +S T +V G G KL KA +L + ++DE
Sbjct: 600 WVVTGKISQMSRDEAKDYLLQLGAKVAGSVSAKTTQVVAGPGAGSKLRKAEELGVPVMDE 659
Query: 640 KNFVK 644
FV+
Sbjct: 660 AEFVE 664
>gi|381401262|ref|ZP_09926172.1| DNA ligase [Kingella kingae PYKK081]
gi|380833754|gb|EIC13612.1| DNA ligase [Kingella kingae PYKK081]
Length = 785
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 252/611 (41%), Positives = 380/611 (62%), Gaps = 32/611 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+++ ++ L + L+R+ YY D P + D++YD+L EL+++E +P+ +S T
Sbjct: 4 TQIQNQIKHLTEILNRYAHEYYTLDAPSVPDSEYDKLYRELEQLERDFPDFRLPESPTNR 63
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDED---------VIIFNKRITNELKLTKNIEYIA 122
VG V H M+SL+N FS D + FN+R+ +L + EY
Sbjct: 64 VGGAILSEFASVRHAVPMLSLNNAFSPRDESGAYDHAETLAFNERVCKDLNQAQT-EYTI 122
Query: 123 ELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRC 182
E KFDG+AV+L Y+ G QA+TRGDG IGE++T NI + IPL L+ K P L+EVR
Sbjct: 123 EPKFDGLAVSLLYQNGIFIQAATRGDGTIGEDVTENIKTVRNIPLKLHGKNIPNLIEVRG 182
Query: 183 EVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG 242
EVL+ K DF LN + G K F NPRNAAAG LRQLN ++ + LHFF +G+ G
Sbjct: 183 EVLMLKADFAALNARQEAAGQKPFANPRNAAAGSLRQLNSRVAAERKLHFFGYGIARFDG 242
Query: 243 M-NMPSSHSELLNWYQKIGLSI-CGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYK 300
+ N P +H+E L W Q++G S+ G + + + + ++ + Y+++ KR NLPYEIDG+V K
Sbjct: 243 VDNPPKTHAEELLWLQELGFSLPTGNWHICANIAEVFQQYEQLAEKRSNLPYEIDGMVIK 302
Query: 301 INCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDG 360
+N L Q+KLGF SRAPR+A+A+KF ++EA+T ++AI++Q+GRTG ITPVA L+PV + G
Sbjct: 303 VNSLIEQEKLGFVSRAPRWAIAHKFPAEEAITIVEAIDVQVGRTGAITPVARLQPVAVGG 362
Query: 361 ITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKI--------- 411
+ +T ATLHN+ E+ RK++++GD+V+V R+G+VIP++ +L RP ++
Sbjct: 363 VVVTNATLHNQDEVARKDVRVGDSVIVRRAGDVIPEVVRVVLERRPMVQELGADLFSETV 422
Query: 412 -------FKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIG 464
F++P +CP+CNS I + +ARCSG + C AQR GL HFS+RKAM+I+G
Sbjct: 423 EKPKFSAFRLPELCPVCNSPIEREDGEAVARCSGGML-CQAQRAQGLIHFSARKAMDIVG 481
Query: 465 LGKKMIEKLVNANIVVTAVDLYKINFKNLLRL---DRVSNKLANNILLAIQKSKLTTFSR 521
LG + IE LV +++ + D+Y+++ L ++ + K A NIL+ I+ S+ SR
Sbjct: 482 LGDRQIEALVEQDVLHSFADIYQLDIAKLQKIKDSKSSATKWAENILIGIENSRKPLLSR 541
Query: 522 FIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHR 581
F++ALGIRHVGE+TAK+LAN F +L + A E L +P IG ++ + QP +
Sbjct: 542 FLFALGIRHVGESTAKQLANAFGDLATVRHAPEPILACLPDIGGVVAQSIAHYFRQPAQQ 601
Query: 582 LLISQLRDVGI 592
L+ L VG+
Sbjct: 602 KLLDDLLAVGV 612
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 600 TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
GGKV +SK T+++V G G KLEKA+ L + +L E F+ ++
Sbjct: 738 AAGGKVSGSVSKKTDFVVAGDAAGSKLEKALSLGVTVLSEDEFLAML 784
>gi|170727191|ref|YP_001761217.1| NAD-dependent DNA ligase [Shewanella woodyi ATCC 51908]
gi|254781418|sp|B1KJT5.1|DNLJ_SHEWM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|169812538|gb|ACA87122.1| DNA ligase, NAD-dependent [Shewanella woodyi ATCC 51908]
Length = 670
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 255/663 (38%), Positives = 395/663 (59%), Gaps = 37/663 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ +L + ++ HN +YY+ D+P + D +YD+L+ LK++E + P L S TQ VG +
Sbjct: 7 IKQLTETINEHNHSYYVEDSPSVPDAEYDRLINRLKQLEGENPHLCLPTSPTQRVGGMAL 66
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
+ H M+SLDN FS+E+ F KRI++ K ++ + E K DG+AV++ Y
Sbjct: 67 AKFDQITHLKPMLSLDNVFSEEEFEAFYKRISD--KTSEAPTFCCEPKLDGLAVSILYRD 124
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G ++A+TRGDG GE+I+ N+ I IPL L P LLEVR EV++ KK F LN
Sbjct: 125 GVYERAATRGDGTTGEDISENVRTILSIPLKLRGDNFPPLLEVRGEVIMPKKAFDALNDR 184
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPSSHSELLNW 255
G K F NPRNAAAG LRQL+ KI ++ L F+A+ +G E + +H + L
Sbjct: 185 ARAKGEKLFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPETWALADTHYDQLMQ 244
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ G + E V+ ++ +Y I +R +L YEIDGVV K++ + Q +LGF ++
Sbjct: 245 LRAWGFPVSAEVKQCGDVSSVVAYYTDIMTRRDSLDYEIDGVVIKVDSIEHQGQLGFVAK 304
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A A+KF ++E +T ++ ++ Q+GRTG +TPVA LKPV + G+T++ ATLHN EI
Sbjct: 305 APRWATAFKFPAQEEVTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIA 364
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
R +++GDTV+V R+G+VIP+I + + RP+D++ + P+ CP+CNS + +E +AR
Sbjct: 365 RLGVKVGDTVIVRRAGDVIPQIVAIVADKRPDDAREIEFPDTCPVCNSMVERVEGEAVAR 424
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+K+ +
Sbjct: 425 CTGGLF-CEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVESPADLFKLTASAITM 483
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
LDR+ K A N++ AI+ +K TTFSRF+Y LGIR VGE TA LANYFK L+ + A E
Sbjct: 484 LDRMGMKSATNLVAAIEVAKTTTFSRFLYGLGIREVGEATAANLANYFKTLDKLKAADAE 543
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------------- 594
+ + +G+ + F QP + ++ +L + G+ W
Sbjct: 544 SFIKVDDVGTIVAQHLTHFFAQPHNLEVVDKLIEAGVNWPEIEEVAEESLSLKGQTWVLT 603
Query: 595 -----LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
LN + K G KV +SKNT+ LV G+ G KL KA L +K++DE+ +
Sbjct: 604 GTLTQLNRNDAKARLQALGAKVAGSVSKNTDCLVAGEAAGSKLTKAQDLGVKVIDEEALL 663
Query: 644 KIV 646
+++
Sbjct: 664 QLL 666
>gi|442323166|ref|YP_007363187.1| DNA ligase [Myxococcus stipitatus DSM 14675]
gi|441490808|gb|AGC47503.1| DNA ligase [Myxococcus stipitatus DSM 14675]
Length = 674
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 269/674 (39%), Positives = 392/674 (58%), Gaps = 43/674 (6%)
Query: 10 NFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLT 69
+F R EL++EL HN YY+ D+P ISD +YD L+ EL+ +EEK+P LLT DS T
Sbjct: 3 DFKTAEARARELRRELAHHNHRYYVLDSPEISDAQYDTLMRELQALEEKHPSLLTPDSPT 62
Query: 70 QHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGI 129
Q VG + V H M+SL N F+DE + F++R+ L + ++ Y+ E K DG+
Sbjct: 63 QRVGGKAADEFGEVVHRAPMLSLANIFNDEGLGEFDERVRKLLGVP-SVTYVCEPKLDGL 121
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYP------PELLEVRCE 183
A+ LRYE G Q +TRGDG GE++T NI I +P+ L +P P LLEVR E
Sbjct: 122 AIALRYEKGVFVQGATRGDGTTGEDVTGNIRTIRSLPMEL---FPLDDTPVPALLEVRGE 178
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
V I K DF KLN R G F NPRNAAAG LRQL+PK + L + + G+
Sbjct: 179 VFIRKADFKKLNDKREEEGEPLFANPRNAAAGSLRQLDPKETAARPLSVYLYECLATEGV 238
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
SH+E L + + +GL + G++ + + Y R LP+E+DG+V K++
Sbjct: 239 PAFKSHTEKLGYLKALGLP-TNQAVRAEGIDGVRQSYDNSLKGRHELPFEVDGMVVKVDD 297
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
+K+LG S++PR+A+AYKF +E T++ I IQ+GRTG +TPVA LKPV + G+T+
Sbjct: 298 EDQRKRLGQVSKSPRWAVAYKFPPEEESTEVLDIGIQVGRTGALTPVAHLKPVKVGGVTV 357
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
RATLHNE E+ RK+++ GDTV V R+G+VIP+I S++LS RP DS+ F+ P CP+C +
Sbjct: 358 ARATLHNEDELRRKDVRKGDTVFVRRAGDVIPEIVSTVLSKRPPDSQPFEFPKHCPVCGA 417
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
E + RC+G+ C AQ ++HF+SR AM+I GLG K+ +LV V T
Sbjct: 418 VATKDEDGAVIRCTGA--SCPAQLVEKIRHFASRLAMDIEGLGDKLASQLVATGTVKTFA 475
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DLY I + LL L+R+ +K A+N+L ++++SK TT RF+YALGIRHVG+ TAK LA F
Sbjct: 476 DLYGITKQKLLTLERMGDKSADNLLESLERSKGTTQRRFLYALGIRHVGDATAKALAEAF 535
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI------YWLNN 597
+F A+ E + + +G + F +P +R I L + G+
Sbjct: 536 PKASELFTASLEDISRVKDVGPVMAQVIHTFFQEPQNREAILALLNAGVSPAPPQVATGG 595
Query: 598 P------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLN 633
P +GGKV +S+ T+++V G+ G KL+KA +L
Sbjct: 596 PFVGKTVVLTGSMTGMTREQAKEEVERRGGKVAGSVSRKTDFVVAGEDAGSKLKKAQELG 655
Query: 634 IKILDEKNFVKIVK 647
++ILDE+ F+++++
Sbjct: 656 VRILDEQAFLQLLQ 669
>gi|406946293|gb|EKD77547.1| hypothetical protein ACD_42C00300G0003 [uncultured bacterium]
Length = 667
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 259/659 (39%), Positives = 397/659 (60%), Gaps = 33/659 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L +++ HN YY D+P ISD +YD+L EL+ +E+ +PE ++ DS TQ VG +
Sbjct: 10 LCDKINHHNYCYYALDSPEISDAEYDRLFRELQSLEKAHPEFISPDSPTQRVGAAPLSSF 69
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
K V H M+SLDN F+ E++I F+ RI+ LK I++ E K DG+A++L YE G L
Sbjct: 70 KEVTHAVPMLSLDNVFNHEELIAFSDRISQRLKSEHLIDFSCEYKLDGVAMSLTYEKGIL 129
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
A+TRGDG +GE +T N+ I IPL L + P+ E+R E++++KK+F +N
Sbjct: 130 ISAATRGDGQVGEEVTHNVRTIKSIPLKLQGNHYPKHCEIRGEIVMFKKEFEAMNLKAKK 189
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIG 260
G K F NPRNAA+G LRQL+ I + L F+A+GV L HS +L ++ G
Sbjct: 190 KGEKIFANPRNAASGSLRQLDSAITAKRPLRFYAYGVVVLSNDIFFEKHSAILKKCREWG 249
Query: 261 LSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFA 320
I + + G+ + +FY KR LPYEIDGVVYK++ L Q +LGF SRAPR+A
Sbjct: 250 FPISRDIFIAHGIAECEQFYADTQKKRLKLPYEIDGVVYKVDSLELQNELGFVSRAPRWA 309
Query: 321 LAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQ 380
+A+KF ++E T I+ + Q+GRTG ITPVA LKPVL+ G+T++ ATLHN E+ RK+I+
Sbjct: 310 VAHKFPAEEKETVIEKVEFQVGRTGAITPVARLKPVLVSGVTVSNATLHNFDELSRKDIR 369
Query: 381 IGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSW 440
DTVV+ R+G+VIP++ IL+ R ++ KIP+ CP+C S + ++ + RC+
Sbjct: 370 EKDTVVIRRAGDVIPEVVDVILAKRSVGARKIKIPDACPVCGSAVEKLQDEAVLRCTAG- 428
Query: 441 IECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS 500
+ C AQ + ++HF+SR+AMNI GLG+KM++ L++ ++ T DLY+++ L+ L R+
Sbjct: 429 LYCSAQLRESIKHFASRRAMNIDGLGEKMVDLLMDHQLIHTVADLYRLDRNQLIVLPRLG 488
Query: 501 NKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNI 560
K A+++L A++KSK TT +RF+YALGIR VGE TA LA+ F ++ + +A E +L I
Sbjct: 489 EKSADHLLNAVEKSKTTTLARFLYALGIRDVGEATAAVLASEFPQMDILMQADETRLQQI 548
Query: 561 PKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------------- 594
IG + + F ++P ++ LI QL+ G++W
Sbjct: 549 IDIGPVVSQHILAFFHEPHNQKLIHQLQKAGVHWPVIAQKNKEYLPFLGKTFVITGTLSS 608
Query: 595 LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
++ + G V + +S T+ ++ G PG K +KA +L + LDE F+++V+
Sbjct: 609 MSRDEARYKLQSLGAIVSSSVSVKTHAVIVGDSPGSKYDKAQQLGVTCLDEDAFLRLVR 667
>gi|296046583|gb|ADG86433.1| NAD-dependent DNA ligase [Francisella novicida]
Length = 673
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 264/670 (39%), Positives = 396/670 (59%), Gaps = 41/670 (6%)
Query: 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG 73
+S ++ L+ L +H+ YY+ D P I D +YD+LL +L +E ++PEL+T DS TQ VG
Sbjct: 5 ISEQINHLRSTLEQHSYNYYVLDTPSIPDAEYDRLLQQLSALETQHPELITADSPTQKVG 64
Query: 74 LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNL 133
+ V H M+SLDN FS+++ I FN+RI L T+ + + E K DG+AV++
Sbjct: 65 GAALSKFEQVAHQVPMLSLDNAFSEDEFIAFNRRIKERLMSTEELTFCCEPKLDGLAVSI 124
Query: 134 RYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIK 193
Y G L QA+TRGDG GEN+T N+ I +PL L P LEVR EV + F K
Sbjct: 125 IYRDGVLVQAATRGDGLTGENVTQNVKTIRNVPLKLRGSDYPAELEVRGEVFMDNAGFEK 184
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253
N G K F NPRNAAAG LRQL+ KI + L F+A+ G + ++ H + L
Sbjct: 185 FNIEAEKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIAEDHYQQL 244
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
GL +C E ++ G + +Y I +R L YEIDGVV KIN + Q++LGF
Sbjct: 245 EKLTDWGLPLCPETKLVEGPQAALAYYTDILTRRGELKYEIDGVVIKINQKALQERLGFV 304
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
+RAPR+A+AYKF ++E +TK+ + Q+GRTG ITPVA L+PV + G+T++ ATLHN E
Sbjct: 305 ARAPRWAIAYKFPAQEEITKLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNGDE 364
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
I R +++GDTV++ R+G+VIP+IT +L RP+D++ + P CPIC+S + +E +
Sbjct: 365 IARLGVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFPVTCPICDSHVEKVEGEAV 424
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
ARC+G + C AQRK ++HF+SRKA++I GLG K++++LV+ ++ T DL+ + +
Sbjct: 425 ARCTGGLV-CPAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPADLFILKQGHF 483
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
L+R+ K A N++ A+Q +K TT ++F+Y+LGIR GE T + LAN+F LE + A+
Sbjct: 484 ESLERMGPKSAKNLVTALQDAKATTLAKFLYSLGIREAGEATTQNLANHFLTLENVINAS 543
Query: 554 EEQLLNIPKIG---STTVKAFIKFINQPLHRL-LISQLRDVGIYW--LNNPNTK------ 601
+ L + +G +T V++F F Q H L +++ L + GI W L P+ +
Sbjct: 544 IDSLTQVSDVGEIVATHVRSF--FAEQ--HNLDVVNALVEQGINWPELTPPSAQEQPLAG 599
Query: 602 ------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
G KV +S T+ LV G+K G KL KA L I +L
Sbjct: 600 LVYVLTGTLNTLNRNDAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDVL 659
Query: 638 DEKNFVKIVK 647
E++ + +++
Sbjct: 660 TEEDLINLLE 669
>gi|121611375|ref|YP_999182.1| DNA ligase [Verminephrobacter eiseniae EF01-2]
gi|166216275|sp|A1WRA7.1|DNLJ_VEREI RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|121556015|gb|ABM60164.1| DNA ligase, NAD-dependent [Verminephrobacter eiseniae EF01-2]
Length = 693
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 259/684 (37%), Positives = 392/684 (57%), Gaps = 47/684 (6%)
Query: 8 KINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDS 67
+++ ++ R+ L+++L Y++ D P + D +YD+ L+ +E +P L+T DS
Sbjct: 13 QMDPAQADARIRALREQLVHWAHQYHVLDAPSVPDAEYDRAFQALQALEAAHPALITPDS 72
Query: 68 LTQHVGLVGGENSKYVHHTFKMMSL----DNGFSDEDVIIFNKRITNELKLTKN---IEY 120
T+ V + V H M+S+ D G F+ R+ EL LT IEY
Sbjct: 73 PTRRVQGAVLQGLTPVRHALPMLSIQTETDTGAGGAQA--FDARVRRELGLTDADPAIEY 130
Query: 121 IAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEV 180
+ E KFDG+A+ LRYE L QA+TRGDG IGE++T NI I +IPL L P LLEV
Sbjct: 131 VVEPKFDGLAMGLRYENRRLVQAATRGDGEIGEDVTHNIRTIRQIPLGLPDDAP-ALLEV 189
Query: 181 RCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL 240
R EV + + DF LN+ + K F NPRNAAAG +RQL+ I + L FFA+G+G +
Sbjct: 190 RGEVYMRRADFDALNQRQRAQSGKTFVNPRNAAAGAVRQLDANITAQRPLRFFAYGLGAV 249
Query: 241 R--GMNMPS--SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDG 296
G P+ +H LL + G + + + G ++L +++I +R LPY+IDG
Sbjct: 250 TAPGEGGPAWRTHYALLQTLKSWGFPVAEQVGIAHGASQLAALHEQIGARRDALPYDIDG 309
Query: 297 VVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPV 356
VVYK+N L Q+ LGF +R PR+A+A+K+ ++E T+++ I +Q+GRTG +TPVA L PV
Sbjct: 310 VVYKVNALQLQRDLGFKTREPRWAVAHKYPAQEMPTRVEGIELQVGRTGKLTPVARLAPV 369
Query: 357 LIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPN 416
+ G+T+T ATLHN EI +K +++GDTV V R+G+VIP++ + R F++P
Sbjct: 370 FVGGVTVTNATLHNLFEIRKKQVRVGDTVTVRRAGDVIPEVVGVLPGQRSAYVANFRMPA 429
Query: 417 ICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNA 476
CP+C S ++ + RC+G C AQRK L HF++R+A++I GLG K++++LV+A
Sbjct: 430 HCPVCGSAVVREKGEANHRCTGGLF-CAAQRKEALLHFAARRALDIEGLGDKLVDQLVDA 488
Query: 477 NIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTA 536
+V DLY+++ L LDR++ K A N+L A++KS+ TT RF++ LG+RHVGE TA
Sbjct: 489 ELVRGLPDLYRLDLVALSALDRMAEKSAQNLLDALEKSRQTTLPRFLFGLGLRHVGEATA 548
Query: 537 KELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN 596
K+LA +F L+ + A+ EQLL + IG ++ F QP +R +++QLR G+ W
Sbjct: 549 KDLARHFGTLDAIMNASVEQLLQVSDIGPVVAQSLHCFFQQPHNREVVAQLRACGLRWPE 608
Query: 597 NP--------------------------------NTKGGKVVNFISKNTNYLVKGQKPGK 624
G KV +SK T+YL+ G + G
Sbjct: 609 GAPPERPAQRLAGKSVVLTGTLPTLGRDAARDLLEAAGAKVTGSVSKKTSYLIAGAEAGS 668
Query: 625 KLEKAIKLNIKILDEKNFVKIVKG 648
KL KA +L I +LDE + ++ G
Sbjct: 669 KLAKARELGIPVLDEAGMLALLAG 692
>gi|326796428|ref|YP_004314248.1| DNA ligase [Marinomonas mediterranea MMB-1]
gi|326547192|gb|ADZ92412.1| DNA ligase [Marinomonas mediterranea MMB-1]
Length = 680
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 261/666 (39%), Positives = 394/666 (59%), Gaps = 38/666 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
V L +L+ ++ +Y++ D+P + D++YD+L L+ IE K P+ + DS TQ VG
Sbjct: 12 VKTLVSQLNDYSYSYHVKDDPKVPDSEYDRLYKALQLIELKNPQWIQPDSPTQRVGEKPD 71
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
V HT M+SLDN F D+ ++ FN+R+ L + +IE+ E K DG+A++LRYE
Sbjct: 72 TGFANVEHTVAMLSLDNAFDDDSMLEFNERVKKLLNESADIEFCCEPKLDGLAISLRYED 131
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L + TRGDG GE+IT+NI IH +PL L PP ++EVR E+ + K+ F LN
Sbjct: 132 GVLVRGVTRGDGLSGEDITSNIRTIHTVPLKLRTDTPPPVVEVRGEIYMPKEGFEVLNAL 191
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
K F NPRNAAAG LRQL+PKI ++ L A+ +G G P SH + L
Sbjct: 192 AKQKDEKLFVNPRNAAAGSLRQLDPKITASRPLVLCAYSIGFSEGWTQPQSHYDGLIQLG 251
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
G I ++G+ + +Y+K+N R L Y+IDG+VYK++ ++ Q++LGF +RAP
Sbjct: 252 DWGFKINDRMERVTGIQGCLSYYEKLNQDRPALTYDIDGIVYKVDSIAKQQELGFIARAP 311
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+A KF ++E +T+IK I+ Q+GRTG ITPVA L+PV + G+T++ ATLHN+ EI R
Sbjct: 312 RWAIARKFPAQEEITQIKGIDFQVGRTGAITPVARLEPVFVGGVTVSNATLHNKDEIARL 371
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
+++ D V++ R+G+VIP++ +L RP + + P+ CP+C S +E + RC+
Sbjct: 372 GVRVNDWVIIRRAGDVIPQVVQVVLEKRPEGTVSVEYPDSCPVCGSHTEQVEGEAVIRCA 431
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN--LLR 495
G + C AQ K L+HF SRKAM+I GLG K+IE+LV+ +V T D+YK++ K LL
Sbjct: 432 GGLV-CNAQLKESLKHFVSRKAMDIDGLGDKLIEQLVDNKLVQTPADIYKLHEKEARLLD 490
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L+R+ +K + +L +I SK T F+RFIYALGIR VGE TAK L ++K L+ + +A +E
Sbjct: 491 LERMGDKSVDKLLTSIDASKNTLFNRFIYALGIREVGEATAKALTKHYKALDALIQADQE 550
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK-------------- 601
L+ + +G + +F Q + ++I++L ++GI W + P
Sbjct: 551 SLIQVSDVGPIVAQHVQRFFEQEQNIVVINELIELGIQW-DAPAEAAGESEQPLLGKTYV 609
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G KV +S T+ LV G+K G KL KA LN+ +LDE+
Sbjct: 610 VTGTLNEFTREEIKEKLQQLGAKVSGSVSGKTDCLVAGEKAGSKLAKAQSLNVPVLDEQG 669
Query: 642 FVKIVK 647
+ +K
Sbjct: 670 IIAFLK 675
>gi|134300185|ref|YP_001113681.1| NAD-dependent DNA ligase [Desulfotomaculum reducens MI-1]
gi|190359251|sp|A4J703.1|DNLJ_DESRM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|134052885|gb|ABO50856.1| DNA ligase, NAD-dependent [Desulfotomaculum reducens MI-1]
Length = 670
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 251/664 (37%), Positives = 401/664 (60%), Gaps = 39/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV L++E++ HN YY+ D P I+D +YDQL+ EL ++EE++PEL+T DS TQ VG
Sbjct: 11 RVEALRREINHHNYQYYVLDQPTITDAQYDQLMQELLRLEERHPELVTPDSPTQRVGGQV 70
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SL N F + D+ F++R+ + L + ++Y+ ELK DG+A++L YE
Sbjct: 71 QRGFSSVPHKIPMLSLGNAFGEGDLREFDRRVRSYLP-GEEVKYVVELKIDGLAISLWYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L + +TRGDG +GE+IT N+ I IPL L + P LEVR E + K F++LN+
Sbjct: 130 KGLLVRGATRGDGELGEDITINLKTIRAIPLRLTQEVP--FLEVRGEAYMPKDSFVRLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G F NPRNAAAG LRQL+PKI + L F + +G + G P SH+E L W
Sbjct: 188 AREEAGEPLFANPRNAAAGSLRQLDPKITAARNLSVFMYAIGYIEGAK-PPSHAESLAWL 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+++G+ I ++ V ++++I+F + KR+ LPY IDG+V K+N L Q++LG T ++
Sbjct: 247 KELGIRINPDHQVCGSIDEVIDFISQWQAKRYQLPYAIDGMVIKVNSLEQQQRLGTTMKS 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF +++A++ IK I I++GRTG++TP A+L+PV + G T+++ATLHNE I +
Sbjct: 307 PRWAIAYKFPAEQAVSTIKDIIIRVGRTGVLTPTAILEPVQLAGTTVSKATLHNEDIIRQ 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD +V ++G++IP+I R + F +P CP C ++++ + RC
Sbjct: 367 KDIRIGDKALVQKAGDIIPEIVQVYPEKRTGNEVPFILPVTCPECGAEVVRVAGEAAHRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+ C A+ + G+ HF SR AM+I+GLG+ ++ +L+ +V DLY + +++L+R
Sbjct: 427 TNE--NCSAKSREGIIHFVSRSAMDIMGLGEGIVNQLIKGGLVKDPADLYDLKYEDLIRQ 484
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ + + +L AI+ SK + + ++ LGIRHVGE AK LA F +++ + +AT E
Sbjct: 485 ERMGARSSQKLLAAIEASKNNSLGQLLFGLGIRHVGERAAKILARQFGSMQALMQATAED 544
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNT---------------- 600
L I +IG ++ +++ ++ ++ LI +L G+ L
Sbjct: 545 LTGISEIGPRIAESIMEYFSRQENQGLIERLSKAGVNMLEEVEQTESTDQTLSGKTFVVT 604
Query: 601 -----------------KGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
+GGKV +SK TNY+V G+ PG K +KA +L I IL E++FV
Sbjct: 605 GTLEGFSRQEAQRAIEERGGKVSGSVSKKTNYVVVGENPGSKHDKARQLGITILTEQDFV 664
Query: 644 KIVK 647
K+++
Sbjct: 665 KLLQ 668
>gi|386333620|ref|YP_006029790.1| DNA ligase [Ralstonia solanacearum Po82]
gi|334196069|gb|AEG69254.1| DNA ligase [Ralstonia solanacearum Po82]
Length = 813
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/607 (40%), Positives = 368/607 (60%), Gaps = 41/607 (6%)
Query: 26 HRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHH 85
+R+ YY+ D P + D +YD+L EL+ +E ++PEL T DS T VG V H
Sbjct: 25 NRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPELRTPDSPTLRVGGAVLPEFAPVRH 84
Query: 86 TFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAVNLRYEYGYL 140
M+S+ + + + + F+ + EL L ++ +EY AELKFDG+A+NLRYE G+L
Sbjct: 85 VVPMLSIRTETDTTADGALAFDASVRRELGLAESDPPVEYAAELKFDGLAINLRYERGFL 144
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNI--KYPPELLEVRCEVLIYKKDFIKLNKYR 198
QA+TRGDG GE++T NI I +IPL L P++LEVR EV + + DF +LN +
Sbjct: 145 VQAATRGDGASGEDVTQNIRTIRQIPLGLRPVDGAVPDVLEVRGEVYMRRDDFERLNARQ 204
Query: 199 YHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM-NMPSSHSELLNWYQ 257
G K F NPRN AAG +RQL+PK+ + L FFA+G+GE G MP +HS +L+
Sbjct: 205 RDRGEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWRGMPETHSGMLDALV 264
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
+G + E + + G L++F+ I KR +LP++IDGVVYK+N L+ Q++LGF +R P
Sbjct: 265 ALGFPVSQERAAVKGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNALALQRELGFRTREP 324
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+A+K+ ++EALT +++I +Q+GRTG ITPVA L PV + G+T+T ATLHNE E+ RK
Sbjct: 325 RWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEVRRK 384
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDS---------------KIFKIPNICPICN 422
++++GDTV+V R+G+VIP++ + +L RP + F++P CP+C
Sbjct: 385 DVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNPAQQPKFPPFELPKSCPVCG 444
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
S ++ E +ARCSG C AQRK ++HF+ R+ M+I GLG++ I+ LV V
Sbjct: 445 SHVVREEGEAVARCSGGLF-CSAQRKEAIRHFAGRRMMDIEGLGERYIDNLVELEYVHGI 503
Query: 483 VDLYKINFKNLLRLDR-----------------VSNKLANNILLAIQKSKLTTFSRFIYA 525
DLY++ L + R ++ K A N+L IQ SK +RF++A
Sbjct: 504 ADLYRLTLDAFLEMKRRADERDGVTPETVAAGKIATKWAENLLAGIQASKTPPLARFLFA 563
Query: 526 LGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLIS 585
LGIRHVGE+TAK LA++ +L + +A LL +P +G+T +A F ++P ++ +
Sbjct: 564 LGIRHVGESTAKTLADWLGSLAVIRRAPAPLLLTLPDVGATVAEAIADFFDEPKNQQALD 623
Query: 586 QLRDVGI 592
L G+
Sbjct: 624 ALLAAGV 630
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 43/162 (26%)
Query: 523 IYA-LGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHR 581
+YA LG+ + T +K+LA L + A QL +P + + + ++ HR
Sbjct: 651 LYAVLGVPKLTATRSKQLATLVPTLAQLTTADAAQLEGLP---AEVSASLLDWLEADGHR 707
Query: 582 LLISQL------------------------------------RDVGIYWLNNPNTKGGKV 605
++QL RD L G KV
Sbjct: 708 ARLAQLDALRAELLAAMPAETAEEGALSGKTVVLTGTLPNLTRDAAKAMLE---AAGAKV 764
Query: 606 VNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
+SK T+Y+V G++ G KL KA +L +K+LDE + +++
Sbjct: 765 SGSVSKKTDYVVAGEEAGSKLAKAEELGVKVLDEAGMLALLQ 806
>gi|410630003|ref|ZP_11340697.1| DNA ligase [Glaciecola arctica BSs20135]
gi|410150404|dbj|GAC17564.1| DNA ligase [Glaciecola arctica BSs20135]
Length = 679
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 257/659 (38%), Positives = 390/659 (59%), Gaps = 35/659 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
+K + +N YY+ DNP + D +YD+ + L+ IE++YPELL+ DS +Q VG +
Sbjct: 14 IKTTIAEYNYQYYVLDNPSVPDAEYDRQMQALQAIEQQYPELLSDDSPSQKVGDMPLPEF 73
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ V H M+SLDN F E + F KR+ + +K I Y E K DG+AV+L YE G L
Sbjct: 74 EQVEHEVPMLSLDNAFDRESFLAFEKRMQDRIKNDSEISYSCEPKLDGLAVSLLYEKGKL 133
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
+ +TRGDG GENIT N+ I IPL+L PE LEVR EV++ + FIKLNK +
Sbjct: 134 VRGATRGDGRTGENITANVRTIKNIPLLLRGDDYPERLEVRGEVIMTRDGFIKLNKTQLE 193
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP--SSHSELLNWYQK 258
K F NPRNAAAG LRQL+ +I + L FF++ +G + P SHS L +
Sbjct: 194 QDKKAFANPRNAAAGSLRQLDSRITAKRPLLFFSYSLGLVENEQYPLADSHSGRLKQLSE 253
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL + E V +G +++Y+ I R +L Y+IDGVV+K + + Q++LGF +RAPR
Sbjct: 254 WGLPLSKELDVANGAEACLDYYQHIGEIRDSLNYDIDGVVFKADNIELQQQLGFVARAPR 313
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN+ EI R
Sbjct: 314 WAIAHKFPAQEEMTIVQDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNQDEIQRLG 373
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
++IGDTV++ R+G+VIP++ S I+ RP D++ P CP+C+S I +E +ARC+G
Sbjct: 374 LKIGDTVIIRRAGDVIPQVVSVIVDKRPADARDIVFPETCPMCDSAIEKLEDEAVARCTG 433
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
+ C AQ K ++HF+SRKA +I GLG K+IE+LV+ +V T D +K+ F + L+R
Sbjct: 434 G-LYCGAQLKESMKHFASRKAFDIDGLGDKIIEQLVDQKLVKTPADFFKLEFIQISNLER 492
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N++ ++ K K TT ++F+Y+LGIR VGE TA LA ++ L+ + +A E L
Sbjct: 493 MGEKSAANLIESLDKCKRTTLAKFMYSLGIREVGEATAANLAAHYCELDAIIQADLESLQ 552
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN---------------------- 596
+ +G+ + + F + + +I +L GI W
Sbjct: 553 EVSDVGAIVAQHLVNFFAEEHNIQVIDELLAAGITWPKIEKIEVDSLPLAGQTFVLTGTL 612
Query: 597 ---NPNTK-------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
+ NT G KV +S T+ +V G+K G KL KA +L +K+++E+ + +
Sbjct: 613 EQMDRNTAKATLQALGAKVAGSVSAKTSCVVAGEKAGSKLAKAEELGVKVINEQEMLDL 671
>gi|349575748|ref|ZP_08887655.1| NAD-dependent DNA ligase LigA [Neisseria shayeganii 871]
gi|348012757|gb|EGY51697.1| NAD-dependent DNA ligase LigA [Neisseria shayeganii 871]
Length = 791
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 250/618 (40%), Positives = 373/618 (60%), Gaps = 36/618 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ L L+R+ YY D P + D +YD+L EL+ +E +PEL +S T+ VG
Sbjct: 5 RIRTLTDTLNRYAHEYYTLDAPSVPDAEYDRLYRELEALEAAHPELRLPESPTRRVGGAM 64
Query: 77 GENSKYVHHTFKMMSLDNGFSDED---------VIIFNKRITNELKLTKNIEYIAELKFD 127
V H M+SL+N FS +D + F++R+ +L L + + Y +E KFD
Sbjct: 65 LAGFDTVVHAVPMLSLNNAFSPQDDSGAFDHAEMRAFDERVGKDLGLAQVV-YCSEPKFD 123
Query: 128 GIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIY 187
G+AV+L Y++G L QA+TRGDG GE++T N+ + +PL L + PEL+EVR EVL+
Sbjct: 124 GLAVSLLYQHGVLVQAATRGDGASGEDVTDNLKTVRNVPLQLQGGHLPELIEVRGEVLML 183
Query: 188 KKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPS 247
K DF LN+ + G K F NPRNAAAG LRQL+ KI + LHFFA+G+ +G +
Sbjct: 184 KADFAALNRRQEAAGQKPFANPRNAAAGSLRQLDSKITAQRKLHFFAYGIARQQGGKVAE 243
Query: 248 SHSELLNWYQKIGLSIC-GEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
+H + L + +G S+ G ++V G+ ++ FY+++ +R +LPYEIDGVV K+N L+
Sbjct: 244 THIDELAYLGGLGFSLPEGRFAVCKGIEAVLAFYERLAAERASLPYEIDGVVVKVNSLAQ 303
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q++LGF SRAPR+A+A+KF ++EALT ++AI++Q+GRTG +TPVA L+PV + G+T+T A
Sbjct: 304 QQQLGFVSRAPRWAVAHKFPAEEALTVVEAIDVQVGRTGAVTPVARLQPVFVGGVTVTNA 363
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRP---------------NDSKI 411
TLHN+ E+ RK++++GDTVVV R+G+VIP++ + RP S
Sbjct: 364 TLHNQDEVSRKDVRVGDTVVVRRAGDVIPEVVRILPERRPMLEIPGADLFSGSLSPQSPP 423
Query: 412 FKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIE 471
F++P CP+C S ++ E+ +ARCSG + C AQR GL HF++RKAM+I GLG+K IE
Sbjct: 424 FRLPENCPVCGSAVVREENEAVARCSGGML-CAAQRAQGLIHFAARKAMDIDGLGQKQIE 482
Query: 472 KLVNANIVVTAVDLYKINFKNLLRLDRVS---------NKLANNILLAIQKSKLTTFSRF 522
LV ++V DLY+++ L ++ K A NIL I S+ +R
Sbjct: 483 ALVAQDLVHGFADLYRLDIATLQQIKDGGQDDSGKPKPQKWAQNILDGIAASRTPPLARL 542
Query: 523 IYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRL 582
++ALGIRHVGE+TAK+LA F +L + +A + L +P IG + + QP
Sbjct: 543 LFALGIRHVGESTAKQLAAAFGSLALLRQAPQPLLACLPDIGGVVAASIADYFRQPAQSA 602
Query: 583 LISQLRDVGIYWLNNPNT 600
L+ L G+ P +
Sbjct: 603 LLDDLLAAGVQPQEGPPS 620
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 599 NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 648
GGKV +SK T+Y+V G+ G KL+KA L + ILDE + ++ G
Sbjct: 737 EAAGGKVSGSVSKKTDYVVAGEAAGSKLDKAQALGVGILDEAGLLALLNG 786
>gi|399912433|ref|ZP_10780747.1| NAD-dependent DNA ligase [Halomonas sp. KM-1]
Length = 687
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 251/664 (37%), Positives = 386/664 (58%), Gaps = 34/664 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
V +L+ EL N YY+ D P ++D +YD+ L L+++E+ +PEL+T DS TQ VG
Sbjct: 12 VAKLRAELDDANYRYYVLDEPHLTDAEYDRKLRRLQELEQAHPELVTPDSPTQRVGAPPD 71
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKL-TKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN ++E++ F KR++ L+ + I + E K DG AV+L YE
Sbjct: 72 AGFPEVEHAVPMLSLDNALNEEELEAFVKRVSERLEADPETIRFCCEPKLDGAAVSLVYE 131
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +TRGDG GE IT+N+ + IPL L P ELLEVR EV++ F +LN+
Sbjct: 132 RGVLISGATRGDGRTGEGITSNLRTLRSIPLKLRGDAP-ELLEVRGEVIMSHAGFERLNE 190
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
K F NPRNAAAG LRQL+P++ + L F A+ V + +SHSEL+
Sbjct: 191 RAREEDGKVFANPRNAAAGSLRQLDPELTAKRPLEFSAYQVARIEPTQGDASHSELMAHL 250
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ G V+SG ++++ +++ +R L Y+IDG V K++ L Q++LGF +RA
Sbjct: 251 KAFGFRTSSLLEVVSGSQGVVDYCRRLGERRDRLGYDIDGAVIKVDDLRLQRELGFVARA 310
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A A+KF ++E T++ + Q+GRTG ITPVA L+PV + G+T++ A+LHN EI R
Sbjct: 311 PRWATAFKFPAQEETTRLNDVEFQVGRTGAITPVARLEPVSVAGVTVSNASLHNADEIAR 370
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
+++IGD+VV+ R+G+VIP++ + RP D++ P CP+C+S++ +E ++ARC
Sbjct: 371 LDVKIGDSVVIRRAGDVIPQVVRVLPERRPADAREIVFPERCPVCDSEVERLEGEVVARC 430
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG + C AQRK L++F+SR+AM+I GLG+K+I++LV + V T DL+++ ++L L
Sbjct: 431 SGG-LYCAAQRKEALKYFASRRAMDIDGLGEKLIDQLVELDWVKTPADLFRLKAEDLATL 489
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
R++ K + ++ A+ K+K TT RFI+ALGIR VGE TA LA +F NL+ + +A +
Sbjct: 490 PRMAQKSSEKLVAALAKAKSTTLPRFIFALGIREVGEATAANLARHFGNLDALMEAEQAD 549
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP------------------ 598
L + +G F Q +R I LR++G+ W
Sbjct: 550 LEAVEDVGPVVAAHVHTFFRQEHNRETIEALRELGVSWAEETIGERPQPLAGQTWVLTGS 609
Query: 599 -------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
G KV +SK T +V G+ G KL KA +L +++LDE F++
Sbjct: 610 LESMTRDEGKERLQALGAKVAGSVSKKTTGVVAGEAAGSKLAKAQELGVEVLDEAAFLER 669
Query: 646 VKGF 649
+ +
Sbjct: 670 LAAW 673
>gi|302390293|ref|YP_003826114.1| NAD-dependent DNA ligase [Thermosediminibacter oceani DSM 16646]
gi|302200921|gb|ADL08491.1| DNA ligase, NAD-dependent [Thermosediminibacter oceani DSM 16646]
Length = 672
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 264/677 (38%), Positives = 412/677 (60%), Gaps = 47/677 (6%)
Query: 9 INFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSL 68
++ S+ R+ EL++ ++ HN YY+YDNP+ISD +YD+L+ +L+K+E+++PEL+T DS
Sbjct: 1 MDRSEAEARIKELRELINYHNRQYYVYDNPVISDAEYDKLMRQLEKLEKQFPELITPDSP 60
Query: 69 TQHVGLVGGENSKY---VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELK 125
+Q VG GE Y V H MMSL N F ++ F++R+T + ++Y+ E K
Sbjct: 61 SQRVG---GEPLPYFTQVVHRVPMMSLANAFDSGELKDFHRRVTE--AVGSEVQYVVEPK 115
Query: 126 FDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPE----LLEVR 181
DG+AV++ YE G K A+TRGDG +GE++T N+ I +PL L+ +PP+ +LEVR
Sbjct: 116 IDGLAVSITYENGIFKTAATRGDGEVGEDVTQNVKTIKSVPLSLD--FPPDKRPAVLEVR 173
Query: 182 CEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELR 241
EV + K+DF KLN+ R GL F NPRNAAAG LRQL+PK+ + L + +G+G
Sbjct: 174 GEVYLPKEDFRKLNEEREEQGLPLFANPRNAAAGSLRQLDPKVTAKRPLAVYIYGLGYAE 233
Query: 242 GMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKI 301
G+ +H E+L ++++IGL + + +I++ N KR +LPYEIDG+V K+
Sbjct: 234 GIEF-ETHYEVLQFFKRIGLRVNPHVVLFDRFQDVIDYCMSWNEKRHDLPYEIDGMVIKV 292
Query: 302 NCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGI 361
N L Q LG T+++PR+A+AYKF +++ T IK I +++GRTG++TP A+L+PV + G
Sbjct: 293 NSLKQQGILGATAKSPRWAIAYKFPAEQKKTVIKDIIVRVGRTGVLTPTAILEPVRVAGS 352
Query: 362 TITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPIC 421
T+++ATLHNE I K+I+IGDTV++H++G+VIP++ + R + F++P+ CP C
Sbjct: 353 TVSKATLHNEDYIREKDIKIGDTVIIHKAGDVIPEVVEVVKEKRTGKERDFEMPHRCPEC 412
Query: 422 NSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVT 481
S+ + + RC+ S C AQ + ++HF+SR AM+I GLG ++ L++ ++
Sbjct: 413 GSEAVRLPGEAAYRCTNS-TGCPAQIRRSIEHFASRDAMDIRGLGSAIVSLLISQGLIKD 471
Query: 482 AVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELAN 541
A DLY + ++L+ L+R+ K A N+L AI++SK R IYALGI VG TA LA
Sbjct: 472 AADLYYLKREDLVPLERMGEKSAANLLAAIEESKKRPLDRLIYALGIPFVGSRTASLLAE 531
Query: 542 YFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI--------- 592
F +++ + KA E L+ +P+IG ++ + F Q LIS+LR G+
Sbjct: 532 AFSSIDDLQKAKYEDLIKVPEIGDKIAQSILAFFRQEQTNDLISRLRAAGVNMEAQKKAE 591
Query: 593 ---------YWLNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAI 630
+ L K GG+V +SK T+Y+V G+ PG K E A+
Sbjct: 592 GPRPLDGLTFVLTGTLEKYTRQQATELIEKLGGRVTGSVSKKTDYVVVGKDPGSKYENAL 651
Query: 631 KLNIKILDEKNFVKIVK 647
KL IKIL+E F ++++
Sbjct: 652 KLGIKILNEGEFEELIE 668
>gi|88703478|ref|ZP_01101194.1| DNA ligase [Congregibacter litoralis KT71]
gi|88702192|gb|EAQ99295.1| DNA ligase [Congregibacter litoralis KT71]
Length = 674
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 254/659 (38%), Positives = 372/659 (56%), Gaps = 33/659 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV L+++L R N YY+ D+P + D +YD L EL+ +EE +PEL S TQ VG
Sbjct: 9 RVHSLREQLERWNHEYYILDSPTVPDQEYDGALRELQTLEEAHPELRDASSPTQRVGAAP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN FSDE++ F KR+ + L + E +AE K DGIAV+L Y
Sbjct: 69 LSAFSSVEHPMPMLSLDNAFSDEELAAFLKRVVDRLDVDSVPELVAEPKLDGIAVSLIYR 128
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L++A+TRGDG GE+IT N+ I +PL L P L+E+R E+ + + F N+
Sbjct: 129 EGLLERAATRGDGTYGEDITLNVRTIRSVPLKLRGASCPALVEIRGEIFMPRAGFEAFNE 188
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ G K F NPRNAAAG LRQL+ KI + L F A+ G+ P SH ++L +
Sbjct: 189 HARRHGEKPFVNPRNAAAGSLRQLDSKITARRPLEFCAYASGQHPEEGWPGSHWDVLQLF 248
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
G+ I LSG++ I+++ ++ +R L ++IDG+VYK+N + Q++LGF +RA
Sbjct: 249 ASWGVPISRYAERLSGLDDCIDYFHRLGDERDALSFDIDGIVYKVNDFAAQRELGFVARA 308
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+++A KF ++EA+TK+ + Q+GRTG ITPVA L+PV + G+T++ ATLHN EI R
Sbjct: 309 PRWSIARKFPAQEAVTKVTGVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNMDEIAR 368
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
N+ GD+VVV R+G+VIP++ S I R S P CP+C S + + RC
Sbjct: 369 LNLHHGDSVVVRRAGDVIPQVVSVIAERREESSAPIDAPPSCPVCQSPVERVAGEATLRC 428
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQ KA ++HF+SR+AM+I GLG+K++E+LV+ +V DL+K+ LL L
Sbjct: 429 TGGLV-CAAQLKAAVRHFASRRAMDIDGLGEKIVEQLVDRGLVRDVADLFKLEQGALLSL 487
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A +L AI S+ TT RFI+ALG+R VGE TA LAN+F LE + A +
Sbjct: 488 ERMGEKSAAKLLAAIDASRQTTLPRFIFALGVREVGEATALALANHFGTLEALSGADLDD 547
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN---NPNTK------------ 601
LL +P +G + F + ++ +L + GI W P
Sbjct: 548 LLEVPDVGPVVAEHVHGFFRADANLGVLRRLLEAGIAWPAVAVAPEVGGALDGQVWVVSG 607
Query: 602 -----------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G + +S T L+ G G KL KA L ++++ E F+
Sbjct: 608 KLESQSRDEAEAALRALGARTAKSVSGKTTVLLAGPGAGSKLSKAESLGVEVISEAEFL 666
>gi|237807406|ref|YP_002891846.1| NAD-dependent DNA ligase [Tolumonas auensis DSM 9187]
gi|237499667|gb|ACQ92260.1| DNA ligase, NAD-dependent [Tolumonas auensis DSM 9187]
Length = 686
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 265/677 (39%), Positives = 393/677 (58%), Gaps = 42/677 (6%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+++ R+ L++ L R+N YYL+D P + D +YD+L+ EL+++E P+ L +S TQ
Sbjct: 1 MNEIQSRMHALQQLLERYNTEYYLHDEPSVPDAEYDRLMNELRELEAANPQWLDVNSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG V + V H M+SLDN F+ ED+ F +R+ L I + E K DG+A
Sbjct: 61 RVGGVALTSFGSVQHEQPMLSLDNVFNAEDLAAFGRRVQERLLSNDAITFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V++ YE G L +A+TRGDG GE+IT N+ I IPL L+ P +EVR EV + K
Sbjct: 121 VSILYEQGELVRAATRGDGVTGEDITRNVRTIRVIPLRLSGDNIPARIEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL-RGMNMPSSH 249
F + N+ G K F NPRNAAAG LRQL+P I + L F+A+ +G + +P SH
Sbjct: 181 FERWNEQALVRGDKVFANPRNAAAGSLRQLDPAITAQRPLAFYAYAIGVVDEATELPDSH 240
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
+ + ++ GL +C E + GV ++ I KR LP+EIDGVV+K++ ++ Q+
Sbjct: 241 YARMQYLKQFGLPVCDEIRQVVGVEGCQIYHDDILAKRDALPFEIDGVVFKVDTIAQQQM 300
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF SRAPR+A+A+KF ++E LT++ + Q+GRTG ITPVA L+PV + G+T++ ATLH
Sbjct: 301 LGFVSRAPRWAVAHKFPAQEELTRLNDVEFQVGRTGAITPVARLEPVQVGGVTVSNATLH 360
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI R ++IGD VVV R+G+VIP+I + +L R + P CP+C+S++ +
Sbjct: 361 NADEITRLGVKIGDWVVVRRAGDVIPQIVNVVLDRRDASCRDIDFPERCPVCDSQVERLP 420
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARCSG + C AQRK L+HF SR+AM+I G+G K+IE+LV+ +V T DL+ +
Sbjct: 421 GEAVARCSGG-LYCAAQRKEALKHFVSRRAMDIDGIGDKLIEQLVDHELVHTPADLFALT 479
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
LL L+R+ K A+ +L A+Q ++ TTF+RF++ALGIR +GETTA+ LA +F +L +
Sbjct: 480 KAQLLGLERMGEKSADKLLNALQSARETTFARFLFALGIREIGETTAQTLAQHFSDLPAL 539
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQP-----LHRLL--ISQLRDVGIYW-------- 594
A+ E LL + +G K F Q + RLL IS+ GI W
Sbjct: 540 QDASVETLLKVSDVGEVMAKHIYYFFRQEHNLEVIQRLLAPISE-GGAGISWQPVARVAV 598
Query: 595 ------------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAI 630
LN K G KV +S T+ ++ G+ G KLEKA
Sbjct: 599 DALPLNGKTLVLTGTLSQLNRDAAKQALQALGAKVAGSVSAKTDLVIAGEAAGSKLEKAQ 658
Query: 631 KLNIKILDEKNFVKIVK 647
+L + + E V +++
Sbjct: 659 QLGVPVWGEDELVALLQ 675
>gi|333375319|ref|ZP_08467133.1| NAD-dependent DNA ligase LigA [Kingella kingae ATCC 23330]
gi|332970926|gb|EGK09901.1| NAD-dependent DNA ligase LigA [Kingella kingae ATCC 23330]
Length = 785
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 253/611 (41%), Positives = 380/611 (62%), Gaps = 32/611 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+++ ++ L + L+R+ YY D P + D++YD+L EL+++E +P +S T
Sbjct: 4 TQIQNQIKHLTEILNRYAHEYYTLDAPSVPDSEYDKLYRELEQLERDFPYFRLPESPTNR 63
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDED---------VIIFNKRITNELKLTKNIEYIA 122
VG V H M+SL+N FS D + FN+R+ +L + EY
Sbjct: 64 VGGAILSEFASVRHAVPMLSLNNAFSPRDESGAYDHAETLAFNERVCKDLNQAQT-EYTI 122
Query: 123 ELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRC 182
E KFDG+AV+L Y+ G QA+TRGDG IGE++T NI + IPL L+ K P L+EVR
Sbjct: 123 EPKFDGLAVSLLYQNGIFIQAATRGDGTIGEDVTENIKTVRNIPLKLHGKNIPNLIEVRG 182
Query: 183 EVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG 242
EVL+ K DF LN + G K F NPRNAAAG LRQLN ++ + LHFF +G+ L G
Sbjct: 183 EVLMLKADFATLNARQEAAGQKPFANPRNAAAGSLRQLNSRVAAERKLHFFGYGIARLDG 242
Query: 243 M-NMPSSHSELLNWYQKIGLSI-CGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYK 300
+ N P +H+E L W Q++G S+ G + + + + ++++ Y+++ KR NLPYEIDG+V K
Sbjct: 243 VENPPQTHAEELLWLQELGFSLPTGNWHICANIAEVLQQYEQLAEKRPNLPYEIDGMVIK 302
Query: 301 INCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDG 360
+N L Q+KLGF SRAPR+A+A+KF ++EA+T ++AI++Q+GRTG ITPVA L+PV + G
Sbjct: 303 VNSLIEQEKLGFVSRAPRWAIAHKFPAEEAITIVEAIDVQVGRTGAITPVARLQPVAVGG 362
Query: 361 ITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKI--------- 411
+ +T ATLHN+ E+ RK++++GD+V+V R+G+VIP++ +L RP ++
Sbjct: 363 VVVTNATLHNQDEVARKDVRVGDSVIVRRAGDVIPEVVRVVLERRPMVQELGADLFSETV 422
Query: 412 -------FKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIG 464
F++P +CP+CNS I + +ARCSG + C AQR GL HFS+RKAM+I+G
Sbjct: 423 EKPKFSAFRLPELCPVCNSPIEREDGEAVARCSGGML-CQAQRAQGLIHFSARKAMDIVG 481
Query: 465 LGKKMIEKLVNANIVVTAVDLYKINFKNLLRL---DRVSNKLANNILLAIQKSKLTTFSR 521
LG + IE LV +++ + D+Y+++ L ++ + K A NIL I+ S+ SR
Sbjct: 482 LGDRQIEALVEQDVLHSFADIYQLDIAKLQKIKDSKSSATKWAENILTGIENSRKPLLSR 541
Query: 522 FIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHR 581
F++ALGIRHVGE+TAK+LAN F +L + A E L +P IG ++ + QP +
Sbjct: 542 FLFALGIRHVGESTAKQLANAFGDLATVRHAPEPILACLPDIGGVVAQSIAHYFRQPAQQ 601
Query: 582 LLISQLRDVGI 592
L+ L VG+
Sbjct: 602 KLLDDLLAVGV 612
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 600 TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
GGKV +SK T+++V G G KLEKA+ L + +L E F+ ++
Sbjct: 738 AAGGKVSGSVSKKTDFVVAGDAAGSKLEKALSLGVAVLSEDEFLAML 784
>gi|338997282|ref|ZP_08635983.1| DNA ligase, NAD-dependent [Halomonas sp. TD01]
gi|338765879|gb|EGP20810.1| DNA ligase, NAD-dependent [Halomonas sp. TD01]
Length = 687
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 260/678 (38%), Positives = 384/678 (56%), Gaps = 42/678 (6%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
KL +++L+ +L N YY+ DNP ++D YD+ L LK++E +YP L++ DS TQ V
Sbjct: 7 KLLEEISQLRADLDDANYRYYVLDNPKLTDADYDRKLQRLKQLESEYPHLVSPDSPTQRV 66
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKL-TKNIEYIAELKFDGIAV 131
G E V H M+SLDN FS +D+ F +R+ L+ +IE+ E K DG AV
Sbjct: 67 GAAPAEGFPEVAHAIPMLSLDNAFSRDDITAFAERVAERLECQVGDIEFSCEPKLDGAAV 126
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L +TRGDG GE IT+N+ + +PL L P LLEVR EV++ F
Sbjct: 127 SLVYEQGILVSGATRGDGRTGEGITSNLRTLKSVPLKLLGDNIPTLLEVRGEVIMRHAGF 186
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELR---------G 242
LN G K F NPRNAAAG LRQL+P+I + L F A+ V + G
Sbjct: 187 EALNDRAREEGSKVFANPRNAAAGSLRQLDPRITATRPLEFHAYQVARIDIANIADSALG 246
Query: 243 MNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKIN 302
++ ++HS+ + + G E +SG + ++ +++ KR L Y+IDGVV K+N
Sbjct: 247 NSIMTTHSQQMERLKAWGFRSSAELRTVSGPELVADYCEQLGEKRDQLGYDIDGVVIKVN 306
Query: 303 CLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGIT 362
L Q++LGF +RAPR+A+A+KF ++E +T + + Q+GRTG ITPVA L+PV + G+T
Sbjct: 307 DLRHQRELGFVARAPRWAVAFKFPAQEEVTTLNDVEFQVGRTGAITPVARLEPVTVAGVT 366
Query: 363 ITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICN 422
++ ATLHN EI R + +GDTV + R+G+VIP++ + RP ++ P CP+C
Sbjct: 367 VSNATLHNADEITRLGVMVGDTVAIRRAGDVIPQVVRVDIDKRPAQARAITFPEHCPVCG 426
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
S I +E +ARCSG + C AQRK L+HF SRKA+++ GLG+K+IE+LV + V T
Sbjct: 427 SDIERLEGEAVARCSGG-LYCAAQRKEALKHFVSRKALDVDGLGEKLIEQLVELDWVKTP 485
Query: 483 VDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY 542
DL+++ + L L R+ K + N++ A+ K+K TT +RFIYALGIR VGE TA LA++
Sbjct: 486 ADLFRLTVEQLQTLPRMGEKSSTNLVNALDKAKHTTLARFIYALGIREVGEATAANLASH 545
Query: 543 FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK- 601
F L+ + +A + L + +G F Q ++ I LRD GI W + T+
Sbjct: 546 FGTLQALQEADQAALEAVNDVGPIVAAHVHTFFRQTHNQETIVALRDAGITWQESVVTQG 605
Query: 602 ------------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIK 631
G KV +SK T LV G+ G KL KA +
Sbjct: 606 PTPLKGQTWVLTGTMDTMTRDDGKARLQALGAKVAGSVSKKTTCLVAGEAAGSKLTKAEQ 665
Query: 632 LNIKILDEKNFVKIVKGF 649
L ++++DE F++ + +
Sbjct: 666 LGVEVIDEATFIERLAAW 683
>gi|268323600|emb|CBH37188.1| DNA ligase [uncultured archaeon]
Length = 667
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 270/659 (40%), Positives = 402/659 (61%), Gaps = 36/659 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ +L++++H HN YY+ D P ISD +YD+L EL+++E KYPEL+T DS TQ +G
Sbjct: 14 IAQLREKIHYHNYRYYVLDEPEISDAEYDRLFVELEELERKYPELITPDSPTQRIGAKPV 73
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
H M+SL++ ++ V F++R+ L + + IEY+ E K DG+A+ L YE
Sbjct: 74 AEFGTYKHRIPMLSLNSVNTEVAVRDFDERVRRMLGV-EEIEYVVEPKIDGLAMELVYEN 132
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G STRGDG GENIT N+ + +PL + + P LLEVR EV + F +LN
Sbjct: 133 GVFIVGSTRGDGKTGENITQNLKTVKTLPLRILSETAP-LLEVRGEVFMPVSKFKELNDL 191
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
G + F NPRNAAAG +RQL+ ++ ++ L FFA+G+G G S+ E+L +
Sbjct: 192 LGAKGDRMFANPRNAAAGSVRQLDSRVTASRPLDFFAYGIGRTEGKTF-STQWEVLMYLH 250
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
KIG + +I+++ ++ KR L YEIDG+V K+N + Q++LG SR+P
Sbjct: 251 KIGFKVSPLIRRFKVFEDVIKYHDEVKEKRDELDYEIDGIVVKVNGIEQQERLGLISRSP 310
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+AYKF ++E T + I +Q+GRTG +TPVA+L PV I G+T++RATLHNE+E+ RK
Sbjct: 311 RWAIAYKFPAREEFTTVNDIVVQVGRTGALTPVAILAPVQISGVTVSRATLHNENELRRK 370
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCS 437
+++IGDTVVV R+G+VIP++ S I S R K F++P CPIC + + ++ I RC
Sbjct: 371 DVRIGDTVVVERAGDVIPEVVSVIKSKRTGAEKEFRMPGRCPICGADV--LKEGPIVRCI 428
Query: 438 GSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLD 497
G + C AQ K ++HF+S +AMNI GLG+K+I +L + +V A DL+ + + LL+LD
Sbjct: 429 G--VSCSAQLKEWIKHFASLRAMNIDGLGEKVIAQLCDRKMVSDAADLFFLTKRELLKLD 486
Query: 498 RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL 557
R+ +K A NIL A++KSK TT SR IYALGIRHVG TA LA+ F LE + A+ + L
Sbjct: 487 RMGDKSARNILNALEKSKHTTLSRLIYALGIRHVGAHTASLLADNFSELESLRNASYDDL 546
Query: 558 LNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------LN 596
++IP+IG K+ I F Q + L+ +L G+++ ++
Sbjct: 547 VHIPEIGPEVAKSIILFFKQGGTKDLLGKLERAGVWYEKKKAAAEARLEGKTFVFTGRIS 606
Query: 597 NPNTK--------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
P + GGKV + +SK T+Y+V G++ G K EKA KL +KI+ E F +I++
Sbjct: 607 MPREEAKSLVERLGGKVASSVSKKTDYVVAGEEAGSKREKAEKLGVKIIGESEFGEIIR 665
>gi|83748812|ref|ZP_00945825.1| NAD-dependent DNA ligase [Ralstonia solanacearum UW551]
gi|207743250|ref|YP_002259642.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) protein
[Ralstonia solanacearum IPO1609]
gi|83724504|gb|EAP71669.1| NAD-dependent DNA ligase [Ralstonia solanacearum UW551]
gi|206594647|emb|CAQ61574.1| dna ligase (polydeoxyribonucleotide synthase [nad+]) protein
[Ralstonia solanacearum IPO1609]
Length = 813
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 244/607 (40%), Positives = 368/607 (60%), Gaps = 41/607 (6%)
Query: 26 HRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHH 85
+R+ YY+ D P + D +YD+L L+ +E ++PEL T DS T VG V H
Sbjct: 25 NRYAHEYYVLDQPSVPDAEYDRLYRALEALEAEHPELRTPDSPTLRVGGAVLPEFAPVRH 84
Query: 86 TFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAVNLRYEYGYL 140
M+S+ + + + + F+ + EL L ++ IEY AELKFDG+A+NLRYE G+L
Sbjct: 85 VVPMLSIRTETDTTADGALAFDASVRRELGLAESDPPIEYAAELKFDGLAINLRYEQGFL 144
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNI--KYPPELLEVRCEVLIYKKDFIKLNKYR 198
QA+TRGDG GE++T NI I +IPL L P++LEVR EV + + DF +LN +
Sbjct: 145 VQAATRGDGATGEDVTQNIRTIRQIPLGLRPVDGAVPDVLEVRGEVYMRRDDFERLNARQ 204
Query: 199 YHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHSELLNWYQ 257
G K F NPRN AAG +RQL+PK+ + L FFA+G+GE G + MP +HS +L+
Sbjct: 205 RERGEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSGMPETHSGMLDALV 264
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
+G + E + + G L++F+ I KR +LP++IDGVVYK+N L+ Q++LGF +R P
Sbjct: 265 ALGFPVSKERAAVMGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNALALQRELGFRTREP 324
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+A+K+ ++EALT +++I +Q+GRTG ITPVA L PV + G+T+T ATLHNE E+ RK
Sbjct: 325 RWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEVRRK 384
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDS---------------KIFKIPNICPICN 422
++++GDTV+V R+G+VIP++ + +L RP + F++P CP+C
Sbjct: 385 DVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNPAQQPKYPPFELPKSCPVCG 444
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
S ++ E +ARCSG C AQRK ++HF+ R+ M+I GLG++ I+ LV V
Sbjct: 445 SHVVREEGEAVARCSGGLF-CSAQRKEAIRHFAGRRMMDIEGLGERYIDNLVELEYVHGI 503
Query: 483 VDLYKINFKNLLRLDR-----------------VSNKLANNILLAIQKSKLTTFSRFIYA 525
DLY++ L + R ++ K A N+L IQ SK +RF++A
Sbjct: 504 ADLYRLTLDAFLEMKRRADERDGVTPETVAAGKIATKWAENLLAGIQASKTPPLARFLFA 563
Query: 526 LGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLIS 585
LGIRHVGE+TAK LA++ +L + +A LL +P +G+T +A F ++P ++ +
Sbjct: 564 LGIRHVGESTAKTLADWLGSLAVIRRAPAPLLLTLPDVGATVAEAIADFFDEPKNQQALD 623
Query: 586 QLRDVGI 592
L G+
Sbjct: 624 ALLAAGV 630
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 43/162 (26%)
Query: 523 IYA-LGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHR 581
+YA LG+ + T +K+LA L + A QL +P + + + ++ HR
Sbjct: 651 LYAVLGVPKLTATRSKQLATLVPTLAQLTTADAAQLEGLP---AEVSASLLDWLEADGHR 707
Query: 582 LLISQL------------------------------------RDVGIYWLNNPNTKGGKV 605
++QL RD L G KV
Sbjct: 708 ARLAQLDALRAELLAAMPAETAEEGALSGKTVVLTGTLPNLTRDAAKAMLE---AAGAKV 764
Query: 606 VNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
+SK T+Y+V G++ G KL KA +L +K+LDE + +++
Sbjct: 765 SGSVSKKTDYVVAGEEAGSKLAKAEELGVKVLDEAGMLALLQ 806
>gi|421495547|ref|ZP_15942827.1| DNA ligase [Aeromonas media WS]
gi|407185422|gb|EKE59199.1| DNA ligase [Aeromonas media WS]
Length = 668
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 266/670 (39%), Positives = 385/670 (57%), Gaps = 34/670 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S + R +L + L + YY+ DNP + D +YD+L+ EL +E ++PEL S +
Sbjct: 1 MSDILSRHRQLCELLTEYGHQYYVLDNPTVPDAEYDRLMRELIALETEHPELKNPTSPSV 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG V H M+SLDN FSDE++ F +R+ + LK N + E K DG+A
Sbjct: 61 RVGGQPLSAFSQVRHEIPMLSLDNVFSDEELQAFEQRMRDRLKRELNFTFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L Y G L QA+TRGDG GE IT N+ I IPLVL P LEVR EV + K
Sbjct: 121 VSLLYVDGQLVQAATRGDGATGEEITENVRTIKAIPLVLRGSGWPARLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F +N G K F NPRNAAAG LRQL+ +I ++ L F+A+GVG + G + +SH
Sbjct: 181 FEAMNAKAQAAGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYGVG-IGGDELGNSHF 239
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
LN + GL + E + G F+ I +R LPYEIDGVVYK++ ++ Q++L
Sbjct: 240 ARLNQLKAWGLPLSPEVKLKEGAAGCQAFHDDILARRSELPYEIDGVVYKVDDIALQQEL 299
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A A+KF ++E +T ++ + Q+GRTG +TPVA LKPV + G+T++ ATLHN
Sbjct: 300 GFVARAPRWATAHKFPAEEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHN 359
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + IGDTV+V R+G+VIP+I + + + RP D++ P CP+C S + +E
Sbjct: 360 ADEIARLGVMIGDTVIVRRAGDVIPQIVAVVEAQRPADAREILFPTQCPVCGSAVERLEG 419
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ RCSG C AQRK ++HF++R+AM++ GLG K++E+LV+ +V T DL+ +N
Sbjct: 420 EAVTRCSGGLF-CEAQRKEAIKHFAARRAMDVDGLGDKIVEQLVDKGLVKTPADLFSLNA 478
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ AI K++ TT RF++ALGIR VGE TA LAN+F L+ +
Sbjct: 479 IQLAGLERMGQKSALNLVAAIDKARSTTLPRFLFALGIREVGEATALNLANHFLTLDALR 538
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
A+ EQLL + +G K F+ QP + ++ L GI+W
Sbjct: 539 AASVEQLLEVADVGDIVAKHVYYFLRQPHNIEVLDALLAAGIHWPAIEKKEASDQPFAGK 598
Query: 595 ----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
L+ + K G KV +S T+ LV G+ G KL KA +L I +
Sbjct: 599 TFVLTGTLTTLSRNDAKAALQALGAKVAGSVSAKTDVLVAGEAAGSKLAKAQELGITVWS 658
Query: 639 EKNFVKIVKG 648
E+ + ++G
Sbjct: 659 EEELQQALQG 668
>gi|431930331|ref|YP_007243377.1| NAD-dependent DNA ligase [Thioflavicoccus mobilis 8321]
gi|431828634|gb|AGA89747.1| DNA ligase, NAD-dependent [Thioflavicoccus mobilis 8321]
Length = 748
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/587 (41%), Positives = 369/587 (62%), Gaps = 9/587 (1%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
++L+ R+ L+++LH HN YY+ D+P + D++YD+LL EL+ +E +PEL+T DS TQ
Sbjct: 5 TELAARLEALRRQLHYHNHRYYVLDDPEVPDSEYDRLLRELQSLEADHPELITPDSPTQR 64
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG V H M+SL N + ++ F++RI EL + + + Y AE K DG+A+
Sbjct: 65 VGAEPLSAFAEVVHRQPMLSLQNAMDETEMRAFDERIRRELGVAQ-VAYTAEPKLDGLAI 123
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L + +TRGDG+ GE++T + IH +PL L + P LLE R EV + DF
Sbjct: 124 SLLYEDGRLVRGATRGDGHRGEDVTAQVRTIHTVPLRLQGEDWPPLLEARGEVFLPIADF 183
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
LN G + F NPRNAAAG LRQL+PK+ + L +G G G ++ S
Sbjct: 184 EALNARLREAGSRTFKNPRNAAAGSLRQLDPKVTAQRPLAMLCYGFGAFDGERPAATQSG 243
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
+L ++ GL + E V+ G+ + +++ + +R LPY+IDGVV+K++ L+ Q++LG
Sbjct: 244 MLAALRRWGLPVSPESKVVDGIGGCLAYHRALAERRDGLPYDIDGVVFKVDDLTAQERLG 303
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +R PR+A+AYK+ ++EALT+++A+ Q+GRTG +TPVA L PV + G+T++ ATLHN
Sbjct: 304 FVTREPRWAIAYKYPAQEALTQVQAVEFQVGRTGAVTPVARLAPVAVGGVTVSNATLHNL 363
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI RK++ +GDTV V R+G+VIP++ + RP D+++ +P+ CP+C + ++
Sbjct: 364 DEIRRKDVHVGDTVYVRRAGDVIPEVVRVLPERRPGDARVVTLPSHCPVCGADVVRPAGE 423
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
++ARCSG C AQRK L HF+SR+AM+I GLG K++E+LV+ ++V DLY + +
Sbjct: 424 VVARCSGGLF-CPAQRKEALVHFASRRAMDIDGLGDKLVEQLVDKDLVHDPADLYGLAAE 482
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
L L+R+ K A N+L A++KSK TTF+RFIYALGIR VGE TA LA++F +L+ +
Sbjct: 483 TLAGLERMGEKSAQNLLAALEKSKETTFARFIYALGIREVGEATAASLASHFADLDALAA 542
Query: 552 ATEE---QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL 595
A E Q+ + IG T + + + R +L D WL
Sbjct: 543 ARVEDFQQIGGVKGIGEKTAERLCARLAEAGDRPPDGELAD----WL 585
>gi|300704237|ref|YP_003745840.1| DNA ligase [Ralstonia solanacearum CFBP2957]
gi|299071901|emb|CBJ43230.1| DNA ligase [Ralstonia solanacearum CFBP2957]
Length = 813
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 243/607 (40%), Positives = 368/607 (60%), Gaps = 41/607 (6%)
Query: 26 HRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHH 85
+R+ YY+ D P + D +YD+L EL+ +E ++P L T DS T VG V H
Sbjct: 25 NRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPALRTPDSPTLRVGGAVLPEFAPVRH 84
Query: 86 TFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAVNLRYEYGYL 140
M+S+ + + + + F+ + EL L ++ +EY AELKFDG+A+NLRYE G+L
Sbjct: 85 VVPMLSIRTETDTTADGALAFDASVRRELGLAESDPPVEYAAELKFDGLAINLRYEQGFL 144
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNI--KYPPELLEVRCEVLIYKKDFIKLNKYR 198
QA+TRGDG GE++T NI I +IPL L P++LEVR EV + + DF +LN +
Sbjct: 145 VQAATRGDGTTGEDVTQNIRTIRQIPLGLRPVDGAVPDVLEVRGEVYMRRDDFERLNARQ 204
Query: 199 YHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHSELLNWYQ 257
G K F NPRN AAG +RQL+PK+ + L FFA+G+GE G + MP +HS +L+
Sbjct: 205 RERGEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSAMPETHSGMLDALV 264
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
+G + E + + G L++F+ I KR +LP++IDGVVYK+N L+ Q++LGF +R P
Sbjct: 265 ALGFPVSRERAAVKGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNSLALQRELGFRTREP 324
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+A+K+ ++EALT +++I +Q+GRTG ITPVA L PV + G+T+T ATLHNE E+ RK
Sbjct: 325 RWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEVRRK 384
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDS---------------KIFKIPNICPICN 422
++++GDTV+V R+G+VIP++ + +L RP + F++P CP+C
Sbjct: 385 DVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNAAQQPKHPPFELPKSCPVCG 444
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
S ++ E +ARCSG C AQRK ++HF+ R+ M+I GLG++ I+ LV V
Sbjct: 445 SHVVREEGEAVARCSGGLF-CSAQRKEAIRHFAGRRMMDIEGLGERYIDNLVELEYVHGI 503
Query: 483 VDLYKINFKNLLRLDR-----------------VSNKLANNILLAIQKSKLTTFSRFIYA 525
DLY++ L + R ++ K A N+L IQ SK +RF++A
Sbjct: 504 ADLYRLTLDAFLEMKRRADERDGVTPETVAAGKIATKWAENLLAGIQASKTPPLARFLFA 563
Query: 526 LGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLIS 585
LGIRHVGE+TAK LA++ +L + +A LL +P +G+T +A F ++P ++ +
Sbjct: 564 LGIRHVGESTAKTLADWLGSLAVIRRAPAPLLLTLPDVGATVAEAIADFFDEPKNQQALD 623
Query: 586 QLRDVGI 592
L G+
Sbjct: 624 ALLAAGV 630
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 599 NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
G KV +SK T+Y+V G++ G KL KA +L +K+LDE + +++
Sbjct: 758 EAAGAKVSGSVSKKTDYVVAGEEAGSKLAKAAELGVKVLDEAGMLALLQ 806
>gi|213156587|ref|YP_002318248.1| NAD-dependent DNA ligase [Acinetobacter baumannii AB0057]
gi|215484469|ref|YP_002326704.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB307-0294]
gi|301347734|ref|ZP_07228475.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB056]
gi|301512482|ref|ZP_07237719.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB058]
gi|301594386|ref|ZP_07239394.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB059]
gi|387125008|ref|YP_006290890.1| NAD-dependent DNA ligase [Acinetobacter baumannii MDR-TJ]
gi|403673231|ref|ZP_10935532.1| DNA ligase [Acinetobacter sp. NCTC 10304]
gi|407931684|ref|YP_006847327.1| DNA ligase [Acinetobacter baumannii TYTH-1]
gi|417572384|ref|ZP_12223238.1| DNA ligase (NAD+) [Acinetobacter baumannii Canada BC-5]
gi|417576242|ref|ZP_12227087.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-17]
gi|417870615|ref|ZP_12515570.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ABNIH1]
gi|417872477|ref|ZP_12517379.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ABNIH2]
gi|417876875|ref|ZP_12521624.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ABNIH3]
gi|417881678|ref|ZP_12525991.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ABNIH4]
gi|421204699|ref|ZP_15661817.1| DNA ligase [Acinetobacter baumannii AC12]
gi|421534728|ref|ZP_15980999.1| DNA ligase [Acinetobacter baumannii AC30]
gi|421621939|ref|ZP_16062850.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC074]
gi|421642461|ref|ZP_16082977.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-235]
gi|421648987|ref|ZP_16089383.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-251]
gi|421650742|ref|ZP_16091115.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC0162]
gi|421686763|ref|ZP_16126507.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-143]
gi|421699273|ref|ZP_16138808.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-58]
gi|421701903|ref|ZP_16141389.1| DNA ligase [Acinetobacter baumannii ZWS1122]
gi|421706233|ref|ZP_16145650.1| DNA ligase [Acinetobacter baumannii ZWS1219]
gi|421793004|ref|ZP_16229142.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-2]
gi|421795150|ref|ZP_16231234.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-21]
gi|421798984|ref|ZP_16234992.1| DNA ligase (NAD+) [Acinetobacter baumannii Canada BC1]
gi|424053488|ref|ZP_17791020.1| DNA ligase [Acinetobacter baumannii Ab11111]
gi|424062855|ref|ZP_17800340.1| DNA ligase [Acinetobacter baumannii Ab44444]
gi|425747471|ref|ZP_18865474.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-348]
gi|445457703|ref|ZP_21446691.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC047]
gi|221222446|sp|A3M2U3.2|DNLJ_ACIBT RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|254778154|sp|B7GZ71.1|DNLJ_ACIB3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|254778155|sp|B7I790.1|DNLJ_ACIB5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|254781253|sp|B0V8E4.2|DNLJ_ACIBY RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|193076578|gb|ABO11237.2| DNA ligase [Acinetobacter baumannii ATCC 17978]
gi|213055747|gb|ACJ40649.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB0057]
gi|213986610|gb|ACJ56909.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB307-0294]
gi|342227357|gb|EGT92291.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ABNIH1]
gi|342233647|gb|EGT98363.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ABNIH2]
gi|342236962|gb|EGU01459.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ABNIH3]
gi|342238737|gb|EGU03165.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ABNIH4]
gi|385879500|gb|AFI96595.1| DNA ligase, NAD-dependent [Acinetobacter baumannii MDR-TJ]
gi|395569463|gb|EJG30125.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-17]
gi|398325852|gb|EJN42012.1| DNA ligase [Acinetobacter baumannii AC12]
gi|400207952|gb|EJO38922.1| DNA ligase (NAD+) [Acinetobacter baumannii Canada BC-5]
gi|404567226|gb|EKA72352.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-143]
gi|404571900|gb|EKA76949.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-58]
gi|404667626|gb|EKB35539.1| DNA ligase [Acinetobacter baumannii Ab11111]
gi|404675225|gb|EKB42941.1| DNA ligase [Acinetobacter baumannii Ab44444]
gi|407194390|gb|EKE65531.1| DNA ligase [Acinetobacter baumannii ZWS1219]
gi|407195055|gb|EKE66190.1| DNA ligase [Acinetobacter baumannii ZWS1122]
gi|407900265|gb|AFU37096.1| DNA ligase [Acinetobacter baumannii TYTH-1]
gi|408509507|gb|EKK11178.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC0162]
gi|408513188|gb|EKK14822.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-235]
gi|408514236|gb|EKK15843.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-251]
gi|408696702|gb|EKL42231.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC074]
gi|409987394|gb|EKO43576.1| DNA ligase [Acinetobacter baumannii AC30]
gi|410398264|gb|EKP50486.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-2]
gi|410402037|gb|EKP54166.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-21]
gi|410411195|gb|EKP63075.1| DNA ligase (NAD+) [Acinetobacter baumannii Canada BC1]
gi|425493389|gb|EKU59621.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-348]
gi|444776320|gb|ELX00366.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC047]
Length = 678
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 263/669 (39%), Positives = 395/669 (59%), Gaps = 38/669 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + + +HN AYY+ D P ISD++YD L +LK +EE+YPEL+ DS T VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPTTKVGGQA 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE
Sbjct: 69 LSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEVRCEVLIYKKDFIKL 194
G L + TRGDG GE+IT N+ I +P VL+ KY P LLEVR EVL+ K F KL
Sbjct: 128 NGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSGFEKL 187
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N + G K F NPRNAAAG LRQL+P I + L F+A+G+ + + ++ + L
Sbjct: 188 NADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMHDSLQ 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
W ++G I + + + ++ + Y++I +R NL EIDG+V K++ L Q++LGF S
Sbjct: 248 WLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQQLGFLS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R PR+A AYKF ++ ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI
Sbjct: 308 REPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEI 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
+R +++IGDTV V+R+G+VIPK+ RP ++++ +P CP+C S ++ E +A
Sbjct: 368 HRLDVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVMPEGEALA 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKN 492
RCSG + C AQR ++HF SRKAM+I GLG + +E L+ +++ D+Y + + +
Sbjct: 428 RCSGG-LYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHLHEHRET 486
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A
Sbjct: 487 LLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA 546
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
E L P +G T + F P + ++ +L GI+W + P
Sbjct: 547 NVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWV 605
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G +V +S T +V G+K G KLEKA KL I +++E +
Sbjct: 606 LTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETD 665
Query: 642 FVKIVKGFS 650
F+ ++ G+
Sbjct: 666 FLSLMAGYG 674
>gi|147678862|ref|YP_001213077.1| NAD-dependent DNA ligase [Pelotomaculum thermopropionicum SI]
gi|190359268|sp|A5CZ68.1|DNLJ_PELTS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|146274959|dbj|BAF60708.1| NAD-dependent DNA ligase [Pelotomaculum thermopropionicum SI]
Length = 679
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 252/663 (38%), Positives = 400/663 (60%), Gaps = 46/663 (6%)
Query: 25 LHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVH 84
+ HN YY+ D P I+D +YD+L+ EL+++E+++P L+T S TQ VG E V
Sbjct: 19 IEHHNYLYYVLDRPAITDAQYDRLMRELERLEKQFPALVTPYSPTQRVGGRPREGFAAVR 78
Query: 85 HTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQAS 144
H M+SL N F + ++ F++R+ L + + Y+ ELK DG+AV+L YE G L + +
Sbjct: 79 HLSPMLSLANAFDERELRDFDRRVRQALP-GEQVRYVVELKIDGLAVSLYYENGILVRGA 137
Query: 145 TRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLK 204
TRGDG+ GE+IT N+ + +PL ++ P LEVR E + K+ F +LN+ R G
Sbjct: 138 TRGDGDTGEDITENLKTVRSVPL--RLRRPVPALEVRGEAFMPKEAFSRLNEGREEAGET 195
Query: 205 KFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG---ELRGM------NMPSSHSELLNW 255
F NPRNAAAG LRQL+PKI ++ L F +G G R + P H+E+L
Sbjct: 196 LFANPRNAAAGSLRQLDPKITASRQLDLFVYGTGYGEWGRAVFPDGERTAPQEHAEVLEL 255
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+++G + EY + +++L+E+ +RF LPY +DG+V K+N L+ Q++LG T +
Sbjct: 256 LKELGFKVNPEYRLFDRLDELVEYCLGWQARRFELPYAVDGLVIKVNSLAQQERLGATMK 315
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
+PR+A+AYKF ++A+TK+K I +++GRTG++TP A L+PV + G T++RATLHNE I
Sbjct: 316 SPRWAVAYKFPPEQAVTKVKDIFVRVGRTGVLTPTAELEPVRLAGTTVSRATLHNEDIIR 375
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
K+I+IGD V+V ++G++IP++ + + R K + +P CP C + ++ E R
Sbjct: 376 EKDIRIGDKVLVQKAGDIIPEVVAVLKEERTGAEKAWAMPGRCPSCGAGVVRAEGEAAVR 435
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+ + C A+ + GL HF+SR AM+I GLG +I +LV+A +V DLY + +++L+
Sbjct: 436 CTN--MACPARLQEGLIHFASRDAMDIAGLGPAVIAQLVSAGLVGDPADLYALRYEDLVP 493
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L+R+ K A N+L AI+ SK + +R I+ALGIRHVGE AK LAN++++L + AT+E
Sbjct: 494 LERLGPKSARNLLEAIEASKGRSLARLIFALGIRHVGERAAKILANHYQSLSGLMSATQE 553
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL--------NNP--------- 598
+L+NIP+IG + ++F + +R +I +L G+ L P
Sbjct: 554 ELVNIPEIGPKIAASIVEFFSNEQNRKVIDKLVKAGVNTLTEKVIREGGGPLNGKVFVLT 613
Query: 599 ---------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
+ GG++ + +S+NT+++V G+ PG K EKA+ L +KILDE F
Sbjct: 614 GVLKDFSRQQAQELIESLGGRISSSVSRNTDFVVAGENPGSKYEKALTLGVKILDENEFR 673
Query: 644 KIV 646
++
Sbjct: 674 ELT 676
>gi|417564438|ref|ZP_12215312.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC143]
gi|421788209|ref|ZP_16224519.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-82]
gi|445447327|ref|ZP_21443692.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-A-92]
gi|395556194|gb|EJG22195.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC143]
gi|410403780|gb|EKP55858.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-82]
gi|444759185|gb|ELW83662.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-A-92]
Length = 678
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 262/669 (39%), Positives = 395/669 (59%), Gaps = 38/669 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + + +HN AYY+ D P ISD++YD L +LK +EE+YPEL+ DS T VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPTMKVGGQA 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE
Sbjct: 69 LSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEVRCEVLIYKKDFIKL 194
G L + TRGDG GE+IT N+ I +P VL+ KY P LLEVR EVL+ K F KL
Sbjct: 128 NGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSGFEKL 187
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N + G K F NPRNAAAG LRQL+P I + L F+A+G+ + + ++ + L
Sbjct: 188 NADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMHDSLQ 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
W ++G I + + + ++ + Y++I +R NL EIDG+V K++ L Q++LGF S
Sbjct: 248 WLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQQLGFLS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R PR+A AYKF ++ ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI
Sbjct: 308 REPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEI 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
+R ++++GDTV V+R+G+VIPK+ RP ++++ +P CP+C S ++ E +A
Sbjct: 368 HRLDVRVGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVMPEGEALA 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKN 492
RCSG + C AQR ++HF SRKAM+I GLG + +E L+ +++ D+Y + + +
Sbjct: 428 RCSGG-LYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHLHEHRET 486
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A
Sbjct: 487 LLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA 546
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
E L P +G T + F P + ++ +L GI+W + P
Sbjct: 547 NVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWV 605
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G +V +S T +V G+K G KLEKA KL I +++E +
Sbjct: 606 LTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETD 665
Query: 642 FVKIVKGFS 650
F+ ++ G+
Sbjct: 666 FLSLMAGYG 674
>gi|421076582|ref|ZP_15537564.1| DNA ligase [Pelosinus fermentans JBW45]
gi|392525194|gb|EIW48338.1| DNA ligase [Pelosinus fermentans JBW45]
Length = 678
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 260/675 (38%), Positives = 402/675 (59%), Gaps = 37/675 (5%)
Query: 6 KKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTK 65
KK + ++ ++ +L+++LH HN YY+ D+P I D ++D L+ L ++E YP+L+T
Sbjct: 3 KKIDDIQEIQNKIIQLREQLHYHNYRYYVLDDPEIGDREFDLLMRSLIELESSYPQLITA 62
Query: 66 DSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELK 125
DS TQ VG + K V+H M SL N FS E+++ F+ R+ + L + IEY+ ELK
Sbjct: 63 DSPTQRVGGMVAGGFKRVNHATPMRSLGNCFSAEELLAFHNRVQSGLGEEQGIEYVVELK 122
Query: 126 FDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYP--PELLEVRCE 183
DG+A+NL YE G+L TRGDG GE++TTNI I IPL+L + P LEVR E
Sbjct: 123 IDGLAINLTYENGHLVSGVTRGDGTQGEDVTTNIRTIKSIPLMLRGDHVGIPSFLEVRGE 182
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
+ + K+F +LN R G NPRNAAAG LRQL+PK+ N+ L F +GVG G+
Sbjct: 183 IYMPSKEFERLNYEREEAGEALLANPRNAAAGSLRQLDPKVTANRALDIFVYGVGTYTGI 242
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
+ ++H ++L + ++GL I Y + + + +I + KR LPYEIDG+V K+N
Sbjct: 243 EL-TTHGQVLGYLNQLGLKINPHYKIFNQIEDVIAYCTGFAEKRHELPYEIDGMVIKVND 301
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
LS+Q+ LG+T++ PR+A+AYKF +++A+T ++ I + +GRTG++TP A+L+PV + G TI
Sbjct: 302 LSSQQILGYTAKDPRWAIAYKFPAEQAITVVEDIFVGLGRTGVLTPTAILRPVRVAGSTI 361
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
+RATLHN+ I K+I+IGDTV++H++G VIPK+ S ++ R F +P CP C
Sbjct: 362 SRATLHNQDYIDEKDIRIGDTVIIHKAGEVIPKVVSVVMEKRTGAQIPFVMPEECPECKG 421
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
K+I E +C+ C A + GL HF SR AMNI GLG ++ LV+ +V
Sbjct: 422 KVIRQEGESAHKCTNP--HCPALFREGLIHFVSRDAMNIDGLGPAVLNALVDTGLVKDVA 479
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DLY++ + +L + R+ K A N+L AI+ SK SR ++ALGIRHVG A +A +
Sbjct: 480 DLYQLEMEQVLTVPRMGKKSAENLLTAIENSKQAGLSRLLFALGIRHVGVKAAGIVARRY 539
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNT--- 600
N+E + +A+ E+LL + +IG+ ++ + + + L+++L G+ + T
Sbjct: 540 GNMEDIKQASVEELLELDEIGTKIAESIVAYFAAEENLELVARLETAGLNMIEEKQTITE 599
Query: 601 -----------------------------KGGKVVNFISKNTNYLVKGQKPGKKLEKAIK 631
GGKV +SK TNY+V G + G KL+KA +
Sbjct: 600 NQLFSGKTFVLTGTLEKMSRNQASDIIQKLGGKVSGSVSKKTNYVVAGAEAGSKLDKAQQ 659
Query: 632 LNIKILDEKNFVKIV 646
L +++LDE++F+++V
Sbjct: 660 LRVEVLDEEDFLRMV 674
>gi|359784973|ref|ZP_09288134.1| DNA ligase, NAD-dependent [Halomonas sp. GFAJ-1]
gi|359297668|gb|EHK61895.1| DNA ligase, NAD-dependent [Halomonas sp. GFAJ-1]
Length = 678
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 258/669 (38%), Positives = 378/669 (56%), Gaps = 33/669 (4%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
+L +++L+ +L N YY+ D P ++D YD+ L L ++E ++P L++ DS TQ V
Sbjct: 7 RLLEEISQLRADLDDANYRYYVLDEPKLTDADYDRKLQRLTQLEAEHPTLISPDSPTQRV 66
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKL-TKNIEYIAELKFDGIAV 131
G E V H M+SLDN FS +DV+ F +R+ L+ IE+ E K DG AV
Sbjct: 67 GAAPAEGFPEVAHAIPMLSLDNAFSRDDVVAFAERVAERLECDATEIEFSCEPKLDGAAV 126
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L +TRGDG GE IT+N+ + +PL L K PELLEVR EV++ F
Sbjct: 127 SLVYEQGVLVIGATRGDGRTGEGITSNLRTLRSVPLKLIGKDLPELLEVRGEVIMRHAGF 186
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
LN K F NPRNAAAG LRQL+P+I + L F A+ L+ ++HS
Sbjct: 187 EALNDRARDEDSKVFANPRNAAAGSLRQLDPRITATRPLEFHAYQAARLQPDMGDTTHSA 246
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
L+ +G E S + G + ++ +++ KR L Y+IDGVV K+N L Q++LG
Sbjct: 247 LMARLSVLGFRTSAELSTMRGPQAVADYCEQLGEKRDQLGYDIDGVVIKVNDLRHQRELG 306
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+A+KF ++E +T + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 307 FVARAPRWAVAFKFPAQEEVTTLNDVEFQVGRTGAITPVARLEPVTVAGVTVSNATLHNA 366
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI R + IGDTV + R+G+VIP++ RP +++ P+ CP+C S I +E
Sbjct: 367 DEITRLGVMIGDTVAIRRAGDVIPQVVRVDTDKRPAEARTITFPDHCPVCGSDIERLEGE 426
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARCSG + C AQRK L+HF+SRKA+++ GLG+K+IE+LV+ + V T DL+ +
Sbjct: 427 AVARCSGG-LYCAAQRKEALKHFASRKALDVDGLGEKLIEQLVDLDWVKTPADLFHLTAG 485
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
L L R+ K + N++ A+ K+K TT +RFIYALGIR VGE TA +AN+F L+ +
Sbjct: 486 QLQSLPRMGEKSSTNLVNALDKAKNTTLARFIYALGIREVGEATAANVANHFGTLQALQD 545
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK---------- 601
A L + +G F QP + + L D GI W + T
Sbjct: 546 ADLTALEAVNDVGPIVAAHIHTFFRQPHNLETLQALLDAGITWQESEVTHGPTPLEGQTW 605
Query: 602 ---------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
G KV +SK T+ LV G+ G KL KA +L ++++DE
Sbjct: 606 VLTGAMDTMTRDEGKARLQLLGAKVAGSVSKKTSCLVAGEAAGSKLAKAEQLGVEVIDEA 665
Query: 641 NFVKIVKGF 649
F++ + +
Sbjct: 666 TFIERLAAW 674
>gi|404378990|ref|ZP_10984064.1| DNA ligase, NAD-dependent [Simonsiella muelleri ATCC 29453]
gi|294482296|gb|EFG29993.1| DNA ligase, NAD-dependent [Simonsiella muelleri ATCC 29453]
Length = 798
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 258/607 (42%), Positives = 375/607 (61%), Gaps = 42/607 (6%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L ++L+R+ YY D P + D++YD+L EL+ +E YP +S TQ VG
Sbjct: 14 LTEKLNRYAHEYYTLDAPSVPDSEYDRLYRELEALEMAYPTFRLPESPTQRVGGAILREF 73
Query: 81 KYVHHTFKMMSLDNGFSDED---------VIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
V H M+SL+N FS D + F++R+ +L+L+K +EY E KFDG+A+
Sbjct: 74 ASVRHKIPMLSLNNAFSPLDDNGKFIHTETLAFDERVRKDLELSK-VEYTIEPKFDGLAI 132
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L Y+ G QA+TRGDG GE++T NI + IPL L +Y P+L+EVR EVL+ KKDF
Sbjct: 133 SLLYQDGIFIQAATRGDGITGEDVTENIKTVRNIPLKLQGQYIPDLIEVRGEVLMLKKDF 192
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM---NMPSS 248
+LN+ + K F NPRNAAAG LRQLN +I + LHFF +G+ + G+ N P +
Sbjct: 193 EQLNQRQIAQNQKTFANPRNAAAGSLRQLNSRIAAERKLHFFGYGIAQFSGIQPENAPKT 252
Query: 249 HSELLNWYQKIGLSI-CGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQ 307
H+E L W Q +G S+ G + + + + ++++ Y+ +N KR LPYEIDG+V K+N L+ Q
Sbjct: 253 HAEELLWLQDLGFSLPTGNWHICANIAEVLQQYENLNAKRSTLPYEIDGMVIKVNSLAEQ 312
Query: 308 KKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRAT 367
+KLGF SRAPR+A+A+KF ++EA+T+++ I++Q+GRTG ITPVA LKPV + G+ + AT
Sbjct: 313 EKLGFVSRAPRWAIAHKFPAEEAMTQVETIDVQVGRTGAITPVARLKPVSVGGVIVINAT 372
Query: 368 LHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRP--------------------- 406
LHN+ E+ RK+I+IGDTVVV R+G+VIP++ +L RP
Sbjct: 373 LHNQDEVSRKDIRIGDTVVVRRAGDVIPEVVRVVLEHRPMKIVEIQSNNIQDDLFPTTKT 432
Query: 407 ---NDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNII 463
+ F++P CP+C S I IARC+G I C AQR GL HF+SRKAM+I+
Sbjct: 433 QSVPEFPPFRLPENCPVCGSAIEREAGEAIARCTGGMI-CKAQRSQGLIHFASRKAMDIV 491
Query: 464 GLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL---DRVSNKLANNILLAIQKSKLTTFS 520
GLG K IE LV +I+ + D+Y+++ + L ++ + K A NIL+ I+ S+ S
Sbjct: 492 GLGDKQIEALVTQDILHSFADIYQLDIEKLQQIKDSKSSATKWAENILIGIENSRKPLLS 551
Query: 521 RFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLH 580
RF+Y+LGIRHVGE+TAK+LAN F +L + A E L +P IGS + + QP
Sbjct: 552 RFLYSLGIRHVGESTAKQLANAFGDLATVRHAPEPVLACLPDIGSVVAHSIAHYFRQPEQ 611
Query: 581 RLLISQL 587
+ L+ L
Sbjct: 612 QKLLDDL 618
Score = 47.0 bits (110), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 648
GGKV +SK T+++V G+ G KLEKA+ L I +L+E F+ + +
Sbjct: 751 GGKVSGSVSKKTDFVVAGEAAGSKLEKALSLGITVLNEDEFLAMFQA 797
>gi|332852097|ref|ZP_08433924.1| DNA ligase [Acinetobacter baumannii 6013150]
gi|332867495|ref|ZP_08437648.1| DNA ligase [Acinetobacter baumannii 6013113]
gi|332872654|ref|ZP_08440622.1| DNA ligase [Acinetobacter baumannii 6014059]
gi|332729469|gb|EGJ60808.1| DNA ligase [Acinetobacter baumannii 6013150]
gi|332733912|gb|EGJ65057.1| DNA ligase [Acinetobacter baumannii 6013113]
gi|332739183|gb|EGJ70042.1| DNA ligase [Acinetobacter baumannii 6014059]
Length = 683
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 263/669 (39%), Positives = 395/669 (59%), Gaps = 38/669 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + + +HN AYY+ D P ISD++YD L +LK +EE+YPEL+ DS T VG
Sbjct: 14 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPTTKVGGQA 73
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE
Sbjct: 74 LSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYE 132
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEVRCEVLIYKKDFIKL 194
G L + TRGDG GE+IT N+ I +P VL+ KY P LLEVR EVL+ K F KL
Sbjct: 133 NGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSGFEKL 192
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N + G K F NPRNAAAG LRQL+P I + L F+A+G+ + + ++ + L
Sbjct: 193 NADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMHDSLQ 252
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
W ++G I + + + ++ + Y++I +R NL EIDG+V K++ L Q++LGF S
Sbjct: 253 WLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQQLGFLS 312
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R PR+A AYKF ++ ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI
Sbjct: 313 REPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEI 372
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
+R +++IGDTV V+R+G+VIPK+ RP ++++ +P CP+C S ++ E +A
Sbjct: 373 HRLDVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVMPEGEALA 432
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKN 492
RCSG + C AQR ++HF SRKAM+I GLG + +E L+ +++ D+Y + + +
Sbjct: 433 RCSGG-LYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHLHEHRET 491
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A
Sbjct: 492 LLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA 551
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
E L P +G T + F P + ++ +L GI+W + P
Sbjct: 552 NVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWV 610
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G +V +S T +V G+K G KLEKA KL I +++E +
Sbjct: 611 LTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETD 670
Query: 642 FVKIVKGFS 650
F+ ++ G+
Sbjct: 671 FLSLMAGYG 679
>gi|169797009|ref|YP_001714802.1| DNA ligase [Acinetobacter baumannii AYE]
gi|384142046|ref|YP_005524756.1| DNA ligase [Acinetobacter baumannii MDR-ZJ06]
gi|417571253|ref|ZP_12222110.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC189]
gi|169149936|emb|CAM87830.1| DNA ligase [Acinetobacter baumannii AYE]
gi|347592539|gb|AEP05260.1| DNA ligase [Acinetobacter baumannii MDR-ZJ06]
gi|395551701|gb|EJG17710.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC189]
Length = 691
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 265/683 (38%), Positives = 400/683 (58%), Gaps = 38/683 (5%)
Query: 3 FHAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPEL 62
F K + + + ++ +L + + +HN AYY+ D P ISD++YD L +LK +EE+YPEL
Sbjct: 8 FMVNKIMAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEL 67
Query: 63 LTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIA 122
+ DS T VG + V H M+SL N F+ ED+ F +R+ L + ++Y
Sbjct: 68 VQADSPTTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEV 126
Query: 123 ELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEV 180
ELK DG+A++L YE G L + TRGDG GE+IT N+ I +P VL+ KY P LLEV
Sbjct: 127 ELKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEV 186
Query: 181 RCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL 240
R EVL+ K F KLN + G K F NPRNAAAG LRQL+P I + L F+A+G+ +
Sbjct: 187 RGEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQC 246
Query: 241 RGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYK 300
+ ++ + L W ++G I + + + ++ + Y++I +R NL EIDG+V K
Sbjct: 247 EPNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVK 306
Query: 301 INCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDG 360
++ L Q++LGF SR PR+A AYKF ++ ALT ++ I+ Q+GRTG +TPVA L PV + G
Sbjct: 307 VDDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGG 366
Query: 361 ITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPI 420
+T++ TLHN EI+R +++IGDTV V+R+G+VIPK+ RP ++++ +P CP+
Sbjct: 367 VTVSNVTLHNIGEIHRLDVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPV 426
Query: 421 CNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVV 480
C S ++ E +ARCSG + C AQR ++HF SRKAM+I GLG + +E L+ +++
Sbjct: 427 CASPVVMPEGEALARCSGG-LYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLK 485
Query: 481 TAVDLYKI--NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKE 538
D+Y + + + LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+
Sbjct: 486 DVADIYHLHEHRETLLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARM 545
Query: 539 LANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP 598
LAN F+ LE + A E L P +G T + F P + ++ +L GI+W + P
Sbjct: 546 LANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAP 604
Query: 599 NTK-------------------------------GGKVVNFISKNTNYLVKGQKPGKKLE 627
G +V +S T +V G+K G KLE
Sbjct: 605 TAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLE 664
Query: 628 KAIKLNIKILDEKNFVKIVKGFS 650
KA KL I +++E +F+ ++ G+
Sbjct: 665 KAAKLGIPVMNETDFLSLMAGYG 687
>gi|350564092|ref|ZP_08932911.1| DNA ligase, NAD-dependent [Thioalkalimicrobium aerophilum AL3]
gi|349778092|gb|EGZ32451.1| DNA ligase, NAD-dependent [Thioalkalimicrobium aerophilum AL3]
Length = 703
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 265/688 (38%), Positives = 389/688 (56%), Gaps = 56/688 (8%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L E+ HN AYY D PIISD +YDQL L +E +P+ +T+ S +Q VG +
Sbjct: 16 LCAEIMLHNQAYYRDDRPIISDAQYDQLYQRLLAVEAVHPDWVTEHSPSQQVGFASHQAF 75
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL---------KLTKNIEYIAELKFDGIAV 131
+ H M+SL+N F D+D+ F +R + L K T + + AE K DG+A+
Sbjct: 76 APITHRMPMLSLNNSFDDQDLSAFYQRAYDRLVQIQHPLVAKSTTELAFFAEPKLDGLAL 135
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
+LRYE G L A+TRGDG GE++T N+ I IP L + P +LEVR EV + K
Sbjct: 136 SLRYESGRLVTAATRGDGETGEDVTHNVRTIQDIPKRLRGDHWPAVLEVRGEVFMTKASL 195
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL-RGMNMPSSHS 250
LN+ + G K F NPRNAAAG LRQL+ K+ + L+FF +G GE+ + P +
Sbjct: 196 ASLNEQQLARGDKPFANPRNAAAGSLRQLDAKVTAQRTLNFFCYGWGEVSEDIPWPKDYP 255
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
++ + GL I ++G++K++ +Y++++ KR +L YEIDG+VYK+ LS Q L
Sbjct: 256 GVMALLAQWGLPINPLGQAVAGLDKMLAYYQQLSQKRPDLAYEIDGIVYKLADLSAQTAL 315
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GFT++ PR+A+A KF ++E T + I+IQ+GRTG +TPVA L PV + G+ ++ ATLHN
Sbjct: 316 GFTAKFPRWAIARKFPAQEVWTDLLGIDIQVGRTGALTPVARLTPVAVGGVVVSNATLHN 375
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI RK+I+IGD V+V R+G+VIP+I +S+ R + F +P+ CP+C+S +
Sbjct: 376 LDEIRRKDIRIGDKVIVRRAGDVIPEIVASLADQRVGELAEFSMPSQCPVCDSAVFKDPD 435
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ RCSG + C AQ++ L+HF SRKAM+I GLG K+I +LV A +V D Y++
Sbjct: 436 KAVYRCSGG-LYCPAQQQRALEHFVSRKAMDIQGLGSKVITQLVAAGLVSHPDDFYQLTL 494
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
++LL+L+R++ K A N+L AI SK TF+RFI+ALGI VGE TAK LA F +++ +
Sbjct: 495 ESLLKLERMAEKSAQNLLDAIAASKQITFARFIFALGIAEVGEVTAKNLARTFSSIDDLI 554
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------- 601
A QLL I IG + +F Q +R +IS L GI+W + + +
Sbjct: 555 AADTSQLLAITDIGPVVAEQIQRFFAQAHNREVISGLIAAGIHWPTSSSNQSLSKQANDS 614
Query: 602 ------------------------------------GGKVVNFISKNTNYLVKGQKPGKK 625
G KV + +SKNT++L+ G K G K
Sbjct: 615 TQQATDDHPFVNKTLVITGSFDEFSRIELAERFESLGAKVTSSVSKNTDFLIAGDKAGSK 674
Query: 626 LEKAIKLNIKILDEKNFVKIVKGFSTET 653
L KA L I I+ +++ T
Sbjct: 675 LTKAEALGIPIIKADELTRVLGAVDGST 702
>gi|239501241|ref|ZP_04660551.1| DNA ligase, NAD-dependent [Acinetobacter baumannii AB900]
gi|421675287|ref|ZP_16115212.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC065]
gi|421677165|ref|ZP_16117058.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC111]
gi|421692891|ref|ZP_16132541.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-116]
gi|404559536|gb|EKA64793.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-116]
gi|410382834|gb|EKP35373.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC065]
gi|410393443|gb|EKP45796.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC111]
Length = 678
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 263/669 (39%), Positives = 395/669 (59%), Gaps = 38/669 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + + +HN AYY+ D P ISD++YD L +LK +EE+YPEL+ DS T VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPTTKVGGQA 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE
Sbjct: 69 LSKFESVTHVVPMLSLGNVFNKEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEVRCEVLIYKKDFIKL 194
G L + TRGDG GE+IT N+ I +P VL+ KY P LLEVR EVL+ K F KL
Sbjct: 128 NGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSGFEKL 187
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N + G K F NPRNAAAG LRQL+P I + L F+A+G+ + + ++ + L
Sbjct: 188 NADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMHDSLQ 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
W ++G I + + + ++ + Y++I +R NL EIDG+V K++ L Q++LGF S
Sbjct: 248 WLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQQLGFLS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R PR+A AYKF ++ ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI
Sbjct: 308 REPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEI 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
+R +++IGDTV V+R+G+VIPK+ RP ++++ +P CP+C S ++ E +A
Sbjct: 368 HRLDVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVMPEGEALA 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKN 492
RCSG + C AQR ++HF SRKAM+I GLG + +E L+ +++ D+Y + + +
Sbjct: 428 RCSGG-LYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHLHEHRET 486
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A
Sbjct: 487 LLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA 546
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
E L P +G T + F P + ++ +L GI+W + P
Sbjct: 547 NVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWV 605
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G +V +S T +V G+K G KLEKA KL I +++E +
Sbjct: 606 LTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETD 665
Query: 642 FVKIVKGFS 650
F+ ++ G+
Sbjct: 666 FLSLMAGYG 674
>gi|421809727|ref|ZP_16245560.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC035]
gi|410414087|gb|EKP65894.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC035]
Length = 678
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 263/669 (39%), Positives = 394/669 (58%), Gaps = 38/669 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + + +HN AYY+ D P ISD++YD L +LK +EE+YPE + DS T VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEFVQADSPTTKVGGQA 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE
Sbjct: 69 LSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEVRCEVLIYKKDFIKL 194
G L + TRGDG GE+IT N+ I +P VL+ KY P LLEVR EVL+ K F KL
Sbjct: 128 NGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSGFEKL 187
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N + G K F NPRNAAAG LRQL+P I + L F+A+G+ + + ++ + L
Sbjct: 188 NADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMHDSLQ 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
W ++G I + + + ++ + Y++I +R NL EIDG+V K++ L QK+LGF S
Sbjct: 248 WLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQKQLGFLS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R PR+A AYKF ++ ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI
Sbjct: 308 REPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEI 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
+R +++IGDTV V+R+G+VIPK+ RP ++++ +P CP+C S ++ E +A
Sbjct: 368 HRLDVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVMPEGEALA 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKN 492
RCSG + C AQR ++HF SRKAM+I GLG + +E L+ +++ D+Y + + +
Sbjct: 428 RCSGG-LYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHLHEHRET 486
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A
Sbjct: 487 LLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA 546
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
E L P +G T + F P + ++ +L GI+W + P
Sbjct: 547 NVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWV 605
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G +V +S T +V G+K G KLEKA KL I +++E +
Sbjct: 606 LTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETD 665
Query: 642 FVKIVKGFS 650
F+ ++ G+
Sbjct: 666 FLSLMAGYG 674
>gi|152997408|ref|YP_001342243.1| NAD-dependent DNA ligase [Marinomonas sp. MWYL1]
gi|190359264|sp|A6W0S9.1|DNLJ_MARMS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|150838332|gb|ABR72308.1| DNA ligase, NAD-dependent [Marinomonas sp. MWYL1]
Length = 672
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 258/664 (38%), Positives = 385/664 (57%), Gaps = 36/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L ++L+ ++ AY++ D PI+ D YD+ +L+ IE ++PE + DS TQ VG
Sbjct: 5 QMLDLIQQLNDYSYAYHVKDEPIVPDAVYDRDYRQLQSIEAEHPEWIQADSPTQRVGEKP 64
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V HT M+SLDN F +E + F++RI L + + Y E K DG+A++LRYE
Sbjct: 65 DSGFTNVAHTVPMLSLDNAFDNESLADFDQRIRKLLN-AEQVTYCCEPKLDGLAISLRYE 123
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L + TRGDG GE+IT+NI I+ +PL L K PP +LEVR E+ + K+ F KLN
Sbjct: 124 EGRLVRGVTRGDGLSGEDITSNIKTIYSVPLKLRTKTPPAVLEVRGEIYMPKEGFEKLNA 183
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+PK+ + L A+ +G + G P SH L
Sbjct: 184 LAVEQGEKTFVNPRNAAAGSLRQLDPKVTAKRPLVMCAYSIGYVEGWEQPESHYAGLLQL 243
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ G G I++Y+K+N KR +L Y+IDG+VYK++ ++ Q +LGF +RA
Sbjct: 244 SEWGFRTNDLMITAEGAQGCIDYYEKLNEKRASLSYDIDGIVYKVDQIALQNQLGFIARA 303
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A KF ++E +T+I ++ Q+GRTG ITPVA L+PV + G+T++ ATLHN+ EI R
Sbjct: 304 PRWAIARKFPAQEEMTRILGVDFQVGRTGAITPVARLEPVFVGGVTVSNATLHNKDEIAR 363
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
+++ D V+VHR+G+VIPK+ ++ RP ++ P CP+C S + +E + RC
Sbjct: 364 LGVKVNDFVIVHRAGDVIPKVVQVVIDKRPENATEVVFPEACPVCGSDLEQVEGEAVIRC 423
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK--NLL 494
+G + C AQ K L+HF SRKAM+I GLG K+IE+LV+ +V T VD++ ++ K LL
Sbjct: 424 TGGLV-CGAQLKESLKHFVSRKAMDIDGLGDKLIEQLVDQQLVKTPVDIFTLSEKKDTLL 482
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
++R+ K +L +I+ +K T F+RFIY+LGIR VGE TA+ L +YF L+ + A +
Sbjct: 483 SMERMGQKSVEKLLASIEIAKSTQFNRFIYSLGIREVGEATARALTSYFTELDDLMAADQ 542
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK------------- 601
E L+ + +G + F +Q L+R I L G+ W
Sbjct: 543 ETLVEVEDVGPIVAQHVRLFFDQELNRDTIKGLLAAGVVWEKKQQVSADELPLSGKTYVV 602
Query: 602 -------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +S T+ LV G+K G KL KA LN+ I+DE
Sbjct: 603 TGSLSQFSRDQVKDKLQALGAKVSGSVSAKTDCLVAGEKAGSKLTKAQSLNVPIIDEAGV 662
Query: 643 VKIV 646
+ ++
Sbjct: 663 IALL 666
>gi|421888325|ref|ZP_16319423.1| DNA ligase [Ralstonia solanacearum K60-1]
gi|378966274|emb|CCF96171.1| DNA ligase [Ralstonia solanacearum K60-1]
Length = 813
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/607 (39%), Positives = 367/607 (60%), Gaps = 41/607 (6%)
Query: 26 HRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHH 85
+R+ YY+ D P + D +YD+L EL+ +E ++P L T DS T VG V H
Sbjct: 25 NRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPALRTPDSPTLRVGGAALPEFAPVRH 84
Query: 86 TFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAVNLRYEYGYL 140
M+S+ + + + + F+ + EL L ++ +EY AELKFDG+A+NLRYE G+L
Sbjct: 85 VVPMLSIRTETDTTADGALAFDASVRRELGLAESDPPVEYAAELKFDGLAINLRYEQGFL 144
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNI--KYPPELLEVRCEVLIYKKDFIKLNKYR 198
QA+TRGDG GE++T NI I +IPL L P++LEVR EV + + DF +LN +
Sbjct: 145 VQAATRGDGTTGEDVTQNIRTIRQIPLGLRPVDGAVPDVLEVRGEVYMRRDDFERLNARQ 204
Query: 199 YHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHSELLNWYQ 257
G K F NPRN AAG +RQL+PK+ + L FFA+G+GE G + MP +HS +L+
Sbjct: 205 RERGEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEATGWSAMPETHSGMLDALV 264
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
+G + E + + G L++F+ I KR +LP++IDGVVYK+N L+ Q++LGF +R P
Sbjct: 265 ALGFPVSRERAAVKGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNSLALQRELGFRTREP 324
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+A+K+ ++EALT +++I +Q+GRTG ITPVA L PV + G+T+T ATLHNE E+ RK
Sbjct: 325 RWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEVRRK 384
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDS---------------KIFKIPNICPICN 422
++++GDTV+V R+G+VIP++ + + RP F++P CP+C
Sbjct: 385 DVRVGDTVIVRRAGDVIPEVVAVVPERRPMQDVPGGDLFNPAQQPKYPPFELPKSCPVCG 444
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
S ++ E +ARCSG C AQRK ++HF+ R+ M+I GLG++ I+ LV V
Sbjct: 445 SHVVREEGEAVARCSGGLF-CSAQRKEAIRHFAGRRMMDIEGLGERYIDNLVELEYVHGI 503
Query: 483 VDLYKINFKNLLRLDR-----------------VSNKLANNILLAIQKSKLTTFSRFIYA 525
DLY++ + L + R ++ K A N+L IQ SK +RF++A
Sbjct: 504 ADLYRLTLDDFLEMKRRADERDGVTPETVAAGKIATKWAENLLAGIQASKTPPLARFLFA 563
Query: 526 LGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLIS 585
LGIRHVGE+TAK LA++ +L + +A LL +P +G+T +A F ++P ++ +
Sbjct: 564 LGIRHVGESTAKTLADWLGSLAVIRRAPAPLLLTLPDVGATVAEAIADFFDEPKNQQALD 623
Query: 586 QLRDVGI 592
L G+
Sbjct: 624 ALLAAGV 630
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 599 NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
G KV +SK T+Y+V G++ G KL KA +L +K+LDE + +++
Sbjct: 758 EAAGAKVSGSVSKKTDYVVAGEEAGSKLAKAEELGVKVLDEAGMLALLQ 806
>gi|344171474|emb|CCA84086.1| DNA ligase [Ralstonia syzygii R24]
Length = 816
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 245/610 (40%), Positives = 372/610 (60%), Gaps = 44/610 (7%)
Query: 26 HRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHH 85
+R+ YY+ D P + D +YD+L EL+ +E ++PEL T DS T VG V H
Sbjct: 25 NRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPELKTPDSPTLRVGGAVLPEFAPVRH 84
Query: 86 TFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAVNLRYEYGYL 140
M+S+ + + + + F+ + EL L ++ +EY AELKFDG+A+NLRYE G+L
Sbjct: 85 VVPMLSIRTETDTTADGALAFDASVRRELGLAESDPSVEYAAELKFDGLAINLRYEKGFL 144
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVL---NIKYP--PELLEVRCEVLIYKKDFIKLN 195
QA+TRGDG GE++T NI I +IPL L N P P++LEVR EV + + DF +LN
Sbjct: 145 VQAATRGDGTTGEDVTQNIRTIRQIPLGLRPVNGAVPDVPDVLEVRGEVYMRRDDFERLN 204
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG-MNMPSSHSELLN 254
+ G K F NPRN AAG +RQL+PK+ + L FFA+G+GE G MP +H+ +L+
Sbjct: 205 ARQREHGEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWAEMPGTHAGVLD 264
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
G + E + ++G L+ F+ I KR +LP++IDGVVYK+N L+ Q++LGF +
Sbjct: 265 ALVAFGFPVSHERAAVAGGEGLVRFHADIRAKRDSLPFDIDGVVYKVNSLALQRELGFRT 324
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R PR+A+A+K+ ++EALT +++I +Q+GRTG ITPVA L PV + G+T+T ATLHNE E+
Sbjct: 325 REPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLVPVFVGGVTVTNATLHNEDEV 384
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRP----------NDSKI-----FKIPNICP 419
RK++++GDTV+V R+G+VIP++ + +L RP N +++ F++P CP
Sbjct: 385 RRKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDAPGSDLFNPAQLPKYPPFELPKSCP 444
Query: 420 ICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIV 479
+C S ++ E +ARCSG C AQRK ++HF+ R+ M+I GLG++ ++ LV V
Sbjct: 445 VCGSHVVREEGEAVARCSGGLF-CSAQRKEAIRHFAGRRMMDIEGLGERYVDNLVELEYV 503
Query: 480 VTAVDLYKINFKNLLRLDR-----------------VSNKLANNILLAIQKSKLTTFSRF 522
DLY++ + L + R ++ K A N+L IQ SK +RF
Sbjct: 504 HGIADLYRLTLDDFLEMKRRADERDGVTPETVAAGKIATKWAENLLAGIQASKTPPLARF 563
Query: 523 IYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRL 582
++ALGIRHVGE+TAK LA++ +L + +A LL +P +G+T +A F +P ++
Sbjct: 564 LFALGIRHVGESTAKTLADWLGSLAVIRRAPAPLLLTLPDVGATVAEAIADFFAEPKNQQ 623
Query: 583 LISQLRDVGI 592
+ L G+
Sbjct: 624 ALDALLAAGV 633
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 36/156 (23%)
Query: 525 ALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLI 584
ALG+ + T +K+LA L + A QL +P S + + ++ HR +
Sbjct: 657 ALGVPKLTATRSKQLATLVPALAQLATAEAAQLEGLPADVSAS---LLDWLEADDHRARL 713
Query: 585 SQLRDVGIYWLNN----------------------PN-----------TKGGKVVNFISK 611
+QL + L PN G KV +SK
Sbjct: 714 AQLEALRAELLAAMPAGTAEEGALSGKTVVLTGTLPNLTRDAAKAMLEAAGAKVSGSVSK 773
Query: 612 NTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
T+YLV G + G KL +A +L +++LDE + +++
Sbjct: 774 KTDYLVAGVEAGSKLARAQELGVRVLDEAGMLALLQ 809
>gi|255318624|ref|ZP_05359855.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82]
gi|421465426|ref|ZP_15914113.1| DNA ligase (NAD+) [Acinetobacter radioresistens WC-A-157]
gi|255304306|gb|EET83492.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SK82]
gi|400203693|gb|EJO34678.1| DNA ligase (NAD+) [Acinetobacter radioresistens WC-A-157]
Length = 678
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 270/672 (40%), Positives = 402/672 (59%), Gaps = 43/672 (6%)
Query: 18 VTELKKELH---RHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGL 74
VT++++ + +HN AYY+ D P ISDN+YD L +LK +EE+YP+L+ D+ T+ VG
Sbjct: 8 VTQMRQLIQLIAQHNHAYYVMDQPSISDNEYDSLFHQLKALEEQYPDLVQNDTPTRRVG- 66
Query: 75 VGGENSKY--VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
G SK+ V H M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++
Sbjct: 67 -GQALSKFMSVRHAVPMLSLGNVFNKEDLFAFARRVEERLP-GQQVKYEVELKLDGLAIS 124
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIP--LVLNIKYPPELLEVRCEVLIYKKD 190
L YE G L + TRGDG GE+IT N+ I +P L + P+LLEVR EVLI K
Sbjct: 125 LWYENGELVRGVTRGDGETGEDITQNVKTIRNLPKYLYSDQAAIPKLLEVRGEVLIPKTG 184
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F+KLN G K F NPRNAAAG LRQL+P I + L F+A+G+ + + +S +
Sbjct: 185 FLKLNAENEAKGEKIFANPRNAAAGSLRQLDPGIAAARPLAFYAYGIAQCEPEHHLNSMT 244
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
E L+W + +G I + + ++ Y+KI +R +L EIDG+V K++ L QK+L
Sbjct: 245 ESLHWLRDLGFEIAERQFLCDSIEEVQRRYEKIMEERADLGVEIDGMVVKVDSLKQQKQL 304
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF SR PR+A AYKF + ALT ++ I+ Q+GRTGI+TPVA L PV + G+T++ TLHN
Sbjct: 305 GFLSREPRWATAYKFPAIAALTTVENIDWQVGRTGILTPVARLNPVFVGGVTVSNVTLHN 364
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI+R +++IGDTV V+R+G+VIPK+ RP+ +++ +P CP+C S ++ E
Sbjct: 365 IGEIHRLDVRIGDTVSVYRTGDVIPKVEKVWPEFRPDTAEVINLPETCPVCASPVVMPEG 424
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI-- 488
+ARCSG + C AQR ++HF SRKAM+I GLG + +E L++ ++ D+Y +
Sbjct: 425 EALARCSGE-LYCAAQRIESIRHFVSRKAMDIEGLGDRWVESLLHLELLKDVSDIYHLHQ 483
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
+ LL ++++ K N++ AI++SK TT +RFIYALGIR VGETTA+ LAN F+ LE
Sbjct: 484 HRNTLLGIEKMGEKSVQNLINAIEQSKKTTLARFIYALGIRGVGETTARMLANSFQTLEA 543
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP 598
+ +A + L +P +G T + F + +I +L GI+W LN
Sbjct: 544 LQQADVDSLKKVPDVGDITAEWIYDFFRAEHNLEVIDRLLAAGIHWDAPIASTRQPLNGE 603
Query: 599 N--------------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
+ G +V +S T +V G+K G KLEKA KLNI+ L+
Sbjct: 604 SWVLTGTLEHLTREQATQMLQALGARVSGSVSAKTKCVVAGEKAGSKLEKAQKLNIQTLN 663
Query: 639 EKNFVKIVKGFS 650
EK F+++++ +
Sbjct: 664 EKQFIELMETYG 675
>gi|402757663|ref|ZP_10859919.1| DNA ligase [Acinetobacter sp. NCTC 7422]
Length = 675
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 257/660 (38%), Positives = 392/660 (59%), Gaps = 38/660 (5%)
Query: 27 RHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHT 86
+HN AYY+ D P ISD++YD L +LK +E++YP+ + D+ T VG + V H
Sbjct: 19 KHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPDCIQADTPTNKVGGQALSKFESVTHA 78
Query: 87 FKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTR 146
M+SL N F+ ED+ F +RI L + ++Y ELK DG+A++L YE G L + TR
Sbjct: 79 VPMLSLGNVFNQEDLFAFARRIDERLP-NQKVQYEVELKLDGLAISLWYENGVLVRGVTR 137
Query: 147 GDGNIGENITTNIHIIHKIPLVLNIKYP--PELLEVRCEVLIYKKDFIKLNKYRYHLGLK 204
GDG GE+IT N+ I +P VL+ ++ PE LEVR EVL+ K+ F KLN + G K
Sbjct: 138 GDGETGEDITQNVKTIRNLPKVLSSQHQAIPEFLEVRGEVLMPKQGFEKLNADQEAKGDK 197
Query: 205 KFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSIC 264
F NPRNAAAG LRQL+P I ++ L F+A+G+ + + + + + L+W + G I
Sbjct: 198 TFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCQPNHGLETMHDSLHWLTRFGFEIA 257
Query: 265 GEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYK 324
+ + + ++ + Y++I +R +L EIDG+V K++ L Q++LGF SR PR+A AYK
Sbjct: 258 ERQFLCASIEEVQQRYEQIQQERPDLKVEIDGMVIKVDSLKQQQQLGFLSREPRWATAYK 317
Query: 325 FLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDT 384
F ++ ALTK++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI+R +++IGDT
Sbjct: 318 FPAQAALTKVENIDWQVGRTGTLTPVARLTPVFVGGVTVSNVTLHNIGEIHRLDVRIGDT 377
Query: 385 VVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECI 444
V V+R+G+VIPK+ RP D+++ +P CP+C S ++ E +ARCSG + C
Sbjct: 378 VSVYRTGDVIPKVEKVWAEFRPADAEMVHLPTNCPVCESPVVMPEGEALARCSGG-LYCA 436
Query: 445 AQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKNLLRLDRVSNK 502
AQR ++HF SRKA++I GLG + +E L++ +++ D+Y + + LL ++++ K
Sbjct: 437 AQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHLHEHRDTLLTIEKMGEK 496
Query: 503 LANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPK 562
N+ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A E L P
Sbjct: 497 SVQNLFDAIKASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAADIEALKKTPD 556
Query: 563 IGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------------- 601
+G T + F P + ++ +L GI+W + P
Sbjct: 557 VGDITAEWIADFFQAPHNVEVLDRLMAAGIHW-DAPTAPTRQPLNGESWVVTGTLETMGR 615
Query: 602 ----------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGFST 651
G +V +S T +V G+K G KL+KA KL+I++L+E+ F++ +K +
Sbjct: 616 DEATQKLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAQKLDIRVLNEQEFLEFLKQYEA 675
>gi|416484869|ref|ZP_11724414.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322652148|gb|EFY48510.1| NAD-dependent DNA ligase LigA [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
Length = 571
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 239/548 (43%), Positives = 352/548 (64%), Gaps = 1/548 (0%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E + P+L+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQRPDLITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE
Sbjct: 67 LTAFNQIRHEIPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL + ++ +++FY + R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KAWGLPVSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++
Sbjct: 486 DRMGPKSAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDE 545
Query: 557 LLNIPKIG 564
L +P +G
Sbjct: 546 LQKVPDVG 553
>gi|184157078|ref|YP_001845417.1| NAD-dependent DNA ligase [Acinetobacter baumannii ACICU]
gi|254778156|sp|B2HUJ5.1|DNLJ_ACIBC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|183208672|gb|ACC56070.1| NAD-dependent DNA ligase [Acinetobacter baumannii ACICU]
Length = 673
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 263/669 (39%), Positives = 395/669 (59%), Gaps = 38/669 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + + +HN AYY+ D P ISD++YD L +LK +EE+YPEL+ DS T VG
Sbjct: 4 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPTTKVGGQA 63
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE
Sbjct: 64 LSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYE 122
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEVRCEVLIYKKDFIKL 194
G L + TRGDG GE+IT N+ I +P VL+ KY P LLEVR EVL+ K F KL
Sbjct: 123 NGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSGFEKL 182
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N + G K F NPRNAAAG LRQL+P I + L F+A+G+ + + ++ + L
Sbjct: 183 NADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMHDSLQ 242
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
W ++G I + + + ++ + Y++I +R NL EIDG+V K++ L Q++LGF S
Sbjct: 243 WLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQQLGFLS 302
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R PR+A AYKF ++ ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI
Sbjct: 303 REPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEI 362
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
+R +++IGDTV V+R+G+VIPK+ RP ++++ +P CP+C S ++ E +A
Sbjct: 363 HRLDVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVMPEGEALA 422
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKN 492
RCSG + C AQR ++HF SRKAM+I GLG + +E L+ +++ D+Y + + +
Sbjct: 423 RCSGG-LYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHLHEHRET 481
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A
Sbjct: 482 LLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA 541
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
E L P +G T + F P + ++ +L GI+W + P
Sbjct: 542 NVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWV 600
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G +V +S T +V G+K G KLEKA KL I +++E +
Sbjct: 601 LTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETD 660
Query: 642 FVKIVKGFS 650
F+ ++ G+
Sbjct: 661 FLSLMAGYG 669
>gi|452948407|gb|EME53886.1| DNA ligase [Acinetobacter baumannii MSP4-16]
Length = 678
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 262/669 (39%), Positives = 395/669 (59%), Gaps = 38/669 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + + +HN AYY+ D P ISD++YD L +LK +EE+YPEL+ DS T VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPTMKVGGQA 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A+++ YE
Sbjct: 69 LSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISIWYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEVRCEVLIYKKDFIKL 194
G L + TRGDG GE+IT N+ I +P VL+ KY P LLEVR EVL+ K F KL
Sbjct: 128 NGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSGFEKL 187
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N + G K F NPRNAAAG LRQL+P I + L F+A+G+ + + ++ + L
Sbjct: 188 NADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMHDSLQ 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
W ++G I + + + ++ + Y++I +R NL EIDG+V K++ L Q++LGF S
Sbjct: 248 WLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQQLGFLS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R PR+A AYKF ++ ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI
Sbjct: 308 REPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEI 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
+R +++IGDTV V+R+G+VIPK+ RP ++++ +P CP+C S ++ E +A
Sbjct: 368 HRLDVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVMPEGEALA 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKN 492
RCSG + C AQR ++HF SRKAM+I GLG + +E L+ +++ D+Y + + +
Sbjct: 428 RCSGG-LYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHLHEHRET 486
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A
Sbjct: 487 LLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA 546
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
E L P +G T + F P + ++ +L GI+W + P
Sbjct: 547 NVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWV 605
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G +V +S T +V G+K G KLEKA KL I +++E +
Sbjct: 606 LTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETD 665
Query: 642 FVKIVKGFS 650
F+ ++ G+
Sbjct: 666 FLSLMAGYG 674
>gi|344169920|emb|CCA82289.1| DNA ligase [blood disease bacterium R229]
Length = 813
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 244/607 (40%), Positives = 367/607 (60%), Gaps = 41/607 (6%)
Query: 26 HRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHH 85
+R+ YY+ D P + D +YD+L EL+ +E +PEL T DS T VG V H
Sbjct: 25 NRYAHEYYVLDQPSVPDAEYDRLYRELEALEADHPELKTPDSPTLRVGGAVLPEFAPVRH 84
Query: 86 TFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAVNLRYEYGYL 140
M+S+ + + + + F+ + EL L ++ +EY AELKFDG+A+NLRYE G+L
Sbjct: 85 VVPMLSIRTETDTTADGALAFDASVRRELGLAESDPSVEYAAELKFDGLAINLRYEKGFL 144
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNI--KYPPELLEVRCEVLIYKKDFIKLNKYR 198
QA+TRGDG GE++T NI I +IPL L P++LEVR EV + + DF +LN +
Sbjct: 145 VQAATRGDGTTGEDVTQNIRTIRQIPLGLRPIDGAVPDVLEVRGEVYMRRDDFERLNARQ 204
Query: 199 YHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG-MNMPSSHSELLNWYQ 257
G K F NPRN AAG +RQL+PK+ + L FFA+G+GE G MP +H+ +L+
Sbjct: 205 RERGEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWAEMPGTHAGVLDALV 264
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
G S+ E + ++G L+ F+ I KR +LP++IDGVVYK+N L+ Q++LGF +R P
Sbjct: 265 AFGFSVSHERAAVTGGEGLVRFHADIRAKRDSLPFDIDGVVYKVNSLALQRELGFRTREP 324
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+A+K+ ++EALT +++I +Q+GRTG ITPVA L PV + G+T+T ATLHNE E+ RK
Sbjct: 325 RWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLVPVFVGGVTVTNATLHNEDEVRRK 384
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDS---------------KIFKIPNICPICN 422
++++GDTV+V R+G+VIP++ + +L RP + F++P CP+C
Sbjct: 385 DVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNPAQQPKYPPFELPKSCPVCG 444
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
S ++ E +ARCSG C AQRK ++HF+ R+ M+I GLG++ I+ LV V
Sbjct: 445 SHVVREEGEAVARCSGGLF-CSAQRKEAIRHFAGRRMMDIEGLGERYIDNLVELEYVHGI 503
Query: 483 VDLYKINFKNLLRLDR-----------------VSNKLANNILLAIQKSKLTTFSRFIYA 525
DLY++ + L + R ++ K A N+L IQ SK +RF++A
Sbjct: 504 ADLYRLTLDDFLEMKRRADERDGVTPETVAAGKIATKWAENLLAGIQASKTPPLARFLFA 563
Query: 526 LGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLIS 585
LGIRHVGE+TAK LA++ +L + +A LL +P +G+T +A F +P ++ +
Sbjct: 564 LGIRHVGESTAKTLADWLGSLAVIRRAPAPLLLTLPDVGATVAEAIADFFAEPKNQQALD 623
Query: 586 QLRDVGI 592
L G+
Sbjct: 624 ALLAAGV 630
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 36/156 (23%)
Query: 525 ALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLI 584
ALG+ + T +K+LA L + A QL +P S + + ++ HR +
Sbjct: 654 ALGVPKLTATRSKQLATLVPALAQLATADAAQLEGLPADVSAS---LLDWLEADDHRARL 710
Query: 585 SQLRDVGIYWLNN----------------------PN-----------TKGGKVVNFISK 611
+QL + L PN G KV +SK
Sbjct: 711 AQLEALRAELLAAMPAGTAEEGALSGKTVVLTGTLPNLTRDAAKAMLEAAGAKVSGSVSK 770
Query: 612 NTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
T+YLV G + G KL +A +L +++LDE + +++
Sbjct: 771 KTDYLVAGVEAGSKLARAQELGVRVLDEAGMLALLQ 806
>gi|17546117|ref|NP_519519.1| DNA ligase (polydeoxyribonucleotide synthase [NAD+]) protein
[Ralstonia solanacearum GMI1000]
gi|81505313|sp|Q8XZJ7.1|DNLJ_RALSO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|17428413|emb|CAD15100.1| putative dna ligase (polydeoxyribonucleotide synthase [nad+])
protein [Ralstonia solanacearum GMI1000]
Length = 813
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 245/616 (39%), Positives = 371/616 (60%), Gaps = 41/616 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L+ L+R+ YY+ D P + D +YD+L EL+ +E ++PEL T DS T VG
Sbjct: 16 RAAALRATLNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPELRTPDSPTLRVGGAV 75
Query: 77 GENSKYVHHTFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAV 131
V H M+S+ + + + F+ + EL L ++ +EY AELKFDG+A+
Sbjct: 76 LPEFAPVRHVVPMLSIRTETDTTAGGALDFDASVRRELGLAESDPPVEYAAELKFDGLAI 135
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI--KYPPELLEVRCEVLIYKK 189
NLRYE G+L QA+TRGDG GE++T NI I +IPL L P++LEVR EV + +
Sbjct: 136 NLRYEKGFLVQAATRGDGATGEDVTQNIRTIRQIPLGLRPVGGAVPDVLEVRGEVYMRRD 195
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSS 248
DF +LN + G K F NPRN AAG +RQL+PK+ + L FFA+G+GE G + MP +
Sbjct: 196 DFERLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSGMPDT 255
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
HS +L+ G + E + + G L++F+ I KR +LP++IDGVVYK+N L+ Q+
Sbjct: 256 HSGMLDALVAYGFPVSKERAAVKGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNSLALQR 315
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
+LGF +R PR+A+A+K+ ++EALT +++I +Q+GRTG ITPVA L PV + G+T+T ATL
Sbjct: 316 ELGFRTREPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLVPVFVGGVTVTNATL 375
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDS---------------KIFK 413
HNE E+ RK++++GDTV+V R+G+VIP++ + +L RP + F+
Sbjct: 376 HNEDEVRRKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNPTQQPKHPPFE 435
Query: 414 IPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKL 473
+P CP+C S ++ E +ARCSG C AQRK ++HF+ R+ M+I GLG++ I+ L
Sbjct: 436 LPRSCPVCGSHVVREEGEAVARCSGGLF-CSAQRKEAIRHFAGRRMMDIEGLGERYIDNL 494
Query: 474 VNANIVVTAVDLYKINFKNLLRLDR-----------------VSNKLANNILLAIQKSKL 516
V V DLY++ + L + R ++ K A N+L I+ SK
Sbjct: 495 VELEYVHGIADLYRLTLDDFLEMKRRADERDGVTPETVAAGKIATKWAENLLDGIRASKT 554
Query: 517 TTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576
+RF++A+GIRHVGE+TAK LA++ +L + +A LL +P +G+T +A F
Sbjct: 555 PPLARFLFAMGIRHVGESTAKTLADWLGSLAIVRRAPAPLLLTLPDVGATVAEAIADFFA 614
Query: 577 QPLHRLLISQLRDVGI 592
+P ++ + L G+
Sbjct: 615 EPKNQQALDALLTAGV 630
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 599 NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
G KV +SK T+Y+V G + G KL +A +L +++LDE + +++
Sbjct: 758 EAAGAKVSGSVSKKTDYVVAGVEAGSKLARAQELGVRVLDEAGMLALLQ 806
>gi|294140434|ref|YP_003556412.1| NAD-dependent DNA ligase [Shewanella violacea DSS12]
gi|293326903|dbj|BAJ01634.1| DNA ligase, NAD-dependent [Shewanella violacea DSS12]
Length = 683
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 263/673 (39%), Positives = 388/673 (57%), Gaps = 37/673 (5%)
Query: 10 NFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLT 69
N ++ + EL L+ HN YY+ D P I D +YD+LL +LK +E +PE DS T
Sbjct: 13 NIQAVAQEIAELTDILNGHNYCYYVDDAPSIPDAEYDRLLKQLKVLETAHPEYCFPDSPT 72
Query: 70 QHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGI 129
Q VG V V H M+SLDN FSDE+ F RI ++ + E K DG+
Sbjct: 73 QRVGGVALAKFDQVVHLKPMLSLDNVFSDEEFEAFYNRINDKTDTAPT--FCCEPKLDGL 130
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
AV++ Y G ++A TRGDG GE+IT N+ I IP+ L + P LLEVR EV++ K+
Sbjct: 131 AVSILYRDGIYERAGTRGDGKTGEDITENVRTILSIPMKLRGENFPPLLEVRGEVIMPKQ 190
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPS 247
F LN+ G K+F NPRNAAAG LRQL+ KI ++ L F+A+ +G E +
Sbjct: 191 AFDSLNERARAKGEKEFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEPETWELAD 250
Query: 248 SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQ 307
H + L + G + E V +I +Y I +R +L YEIDGVV K++ + Q
Sbjct: 251 HHYDQLMQLKSWGFPVSAEVKQCDSVKDVIAYYTDIMTRRSSLAYEIDGVVIKVDNIDQQ 310
Query: 308 KKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRAT 367
LGF ++APR+A A+KF ++E +T ++ ++ Q+GRTG +TPVA LKP+ + G+T++ AT
Sbjct: 311 AMLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPIFVGGVTVSNAT 370
Query: 368 LHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIY 427
LHN EI R ++I DTV+V R+G+VIP+I + + RP+D+ + P CP+C+S +
Sbjct: 371 LHNADEIARLGVKIKDTVIVRRAGDVIPQIVAIVADKRPDDASEIEFPTTCPVCDSLVER 430
Query: 428 IESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYK 487
+E +ARC+G C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+K
Sbjct: 431 LEGEAVARCTGGLF-CEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVESPADLFK 489
Query: 488 INFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLE 547
++ + LDR+ K A N++ AI+ +K TTFSRF+YALGIR VGE TA LA+YFK+L+
Sbjct: 490 LSASAMTMLDRMGLKSATNLVKAIEVAKQTTFSRFLYALGIREVGEATAANLASYFKSLD 549
Query: 548 CMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------- 594
+ A E+ + + +G + F Q + ++ L G+ W
Sbjct: 550 KLKAANAEEFIKVDDVGIIVAQHLTHFFAQEHNLAVVDSLIQAGVNWPAIEEVAEESLSL 609
Query: 595 -------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIK 635
LN + K G KV +SKNT+ LV G+ G KL KA L IK
Sbjct: 610 KGQTWVLTGTLTQLNRNDAKAQLQALGAKVAGSVSKNTSCLVAGEAAGSKLTKAQDLGIK 669
Query: 636 ILDEKNFVKIVKG 648
ILDE+ + ++ G
Sbjct: 670 ILDEEGLLAVLAG 682
>gi|299067453|emb|CBJ38652.1| DNA ligase [Ralstonia solanacearum CMR15]
Length = 813
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 245/616 (39%), Positives = 371/616 (60%), Gaps = 41/616 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L+ L+R+ YY+ D P + D +YD+L EL+ +E +PEL T DS T VG
Sbjct: 16 RAAALRATLNRYAHEYYVLDQPSVPDAEYDRLYRELEALEADHPELRTPDSPTLRVGGAV 75
Query: 77 GENSKYVHHTFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAV 131
V H M+S+ + + + F+ + EL L ++ +EY AELKFDG+A+
Sbjct: 76 LPEFAPVRHVVPMLSIRTETDTTAGGALDFDASVRRELGLAESDPPVEYAAELKFDGLAI 135
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI--KYPPELLEVRCEVLIYKK 189
NLRYE G+L QA+TRGDG GE++T NI I +IPL L P++LEVR EV + +
Sbjct: 136 NLRYERGFLVQAATRGDGATGEDVTQNIRTIRQIPLGLRPVDGAVPDVLEVRGEVYMRRD 195
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSS 248
DF +LN + G K F NPRN AAG +RQL+PK+ + L FFA+G+GE G + MP +
Sbjct: 196 DFERLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWSGMPET 255
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
HS +L+ G + E + ++G L++F+ I KR +LP++IDGVVYK+N L+ Q+
Sbjct: 256 HSGMLDALVAYGFPVSKERAAVTGGEGLVQFHAAIGAKRDSLPFDIDGVVYKVNSLALQR 315
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
+LGF +R PR+A+A+K+ ++EALT +++I +Q+GRTG ITPVA L PV + G+T+T ATL
Sbjct: 316 ELGFRTREPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLVPVFVGGVTVTNATL 375
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDS---------------KIFK 413
HNE E+ RK++++GDTV+V R+G+VIP++ + +L RP + F+
Sbjct: 376 HNEDEVRRKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDMPGSDLFNPAQQPKHPPFE 435
Query: 414 IPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKL 473
+P CP+C S ++ E +ARCSG C AQRK ++HF+ R+ M+I GLG++ I+ L
Sbjct: 436 LPKSCPVCGSHVVREEGEAVARCSGGLF-CSAQRKEAIRHFAGRRMMDIEGLGERYIDNL 494
Query: 474 VNANIVVTAVDLYKINFKNLLRLDR-----------------VSNKLANNILLAIQKSKL 516
V V DL+++ + L + R ++ K A N+L I+ SK
Sbjct: 495 VELEYVHGIADLFRLTLDDFLEMKRRADERDGVTPETVAAGKIATKWAENLLDGIRASKT 554
Query: 517 TTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576
+RF++ALGIRHVGE+TAK LA++ +L + +A LL +P +G+T +A F
Sbjct: 555 PPLARFLFALGIRHVGESTAKTLADWLGSLAVIRRAPAPLLLTLPDVGATVAEAIADFFA 614
Query: 577 QPLHRLLISQLRDVGI 592
+P ++ + L G+
Sbjct: 615 EPKNQQALDALLAAGV 630
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 599 NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
G KV +SK T+Y+V G++ G KL +A +L +++LDE + +++
Sbjct: 758 EAAGAKVSGSVSKKTDYVVAGEEAGSKLARAQELGVRVLDEAGMLALLQ 806
>gi|260555699|ref|ZP_05827919.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|260410610|gb|EEX03908.1| DNA ligase, NAD-dependent [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
Length = 691
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 264/683 (38%), Positives = 400/683 (58%), Gaps = 38/683 (5%)
Query: 3 FHAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPEL 62
F K + + + ++ +L + + +HN AYY+ D P ISD++YD L +LK +EE+YPEL
Sbjct: 8 FMVNKIMAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEL 67
Query: 63 LTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIA 122
+ DS T VG + V H M+SL N F+ ED+ F +R+ L + ++Y
Sbjct: 68 VQADSPTMKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEV 126
Query: 123 ELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEV 180
ELK DG+A+++ YE G L + TRGDG GE+IT N+ I +P VL+ KY P LLEV
Sbjct: 127 ELKLDGLAISIWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEV 186
Query: 181 RCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL 240
R EVL+ K F KLN + G K F NPRNAAAG LRQL+P I + L F+A+G+ +
Sbjct: 187 RGEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQC 246
Query: 241 RGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYK 300
+ ++ + L W ++G I + + + ++ + Y++I +R NL EIDG+V K
Sbjct: 247 EPNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVK 306
Query: 301 INCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDG 360
++ L Q++LGF SR PR+A AYKF ++ ALT ++ I+ Q+GRTG +TPVA L PV + G
Sbjct: 307 VDDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGG 366
Query: 361 ITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPI 420
+T++ TLHN EI+R +++IGDTV V+R+G+VIPK+ RP ++++ +P CP+
Sbjct: 367 VTVSNVTLHNIGEIHRLDVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPV 426
Query: 421 CNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVV 480
C S ++ E +ARCSG + C AQR ++HF SRKAM+I GLG + +E L+ +++
Sbjct: 427 CASPVVMPEGEALARCSGG-LYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLK 485
Query: 481 TAVDLYKI--NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKE 538
D+Y + + + LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+
Sbjct: 486 DVADIYHLHEHRETLLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARM 545
Query: 539 LANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP 598
LAN F+ LE + A E L P +G T + F P + ++ +L GI+W + P
Sbjct: 546 LANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAP 604
Query: 599 NTK-------------------------------GGKVVNFISKNTNYLVKGQKPGKKLE 627
G +V +S T +V G+K G KLE
Sbjct: 605 TAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLE 664
Query: 628 KAIKLNIKILDEKNFVKIVKGFS 650
KA KL I +++E +F+ ++ G+
Sbjct: 665 KAAKLGIPVMNETDFLSLMAGYG 687
>gi|406676079|ref|ZP_11083265.1| DNA ligase [Aeromonas veronii AMC35]
gi|404626302|gb|EKB23112.1| DNA ligase [Aeromonas veronii AMC35]
Length = 668
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 259/649 (39%), Positives = 376/649 (57%), Gaps = 34/649 (5%)
Query: 32 YYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMS 91
YY+ DNP + D +YD+L+ EL +E + PEL T S + VG K V H M+S
Sbjct: 22 YYVLDNPTVPDAEYDRLMRELIALEAENPELKTPASPSVRVGGQPLTAFKQVRHEIPMLS 81
Query: 92 LDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNI 151
LDN FS E++ F +R+++ LK + E K DG+AV+L Y G L QA+TRGD
Sbjct: 82 LDNVFSSEELQAFEQRMSDRLKRDVRFTFCCEPKLDGLAVSLLYVNGQLVQAATRGDSAT 141
Query: 152 GENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRN 211
GE IT N+ I IPL L PE LEVR EV + K F +N G K F NPRN
Sbjct: 142 GEEITENVRTIKAIPLALRGSGWPERLEVRGEVFMPKAGFEAMNARALAAGEKVFVNPRN 201
Query: 212 AAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVLS 271
AAAG LRQL+ +I ++ L F+A+G+G + G + SH L ++ GL + E +
Sbjct: 202 AAAGSLRQLDSRITASRPLSFYAYGIG-VGGEQLGDSHFGRLTQLKEWGLPLSPEVKLKE 260
Query: 272 GVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEAL 331
G F+ I +R LPYEIDGVVYK++ + Q++LGF +RAPR+A A+KF ++E +
Sbjct: 261 GAAGCQAFHDDILARRGELPYEIDGVVYKVDAIPLQEELGFVARAPRWATAHKFPAQEEM 320
Query: 332 TKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSG 391
T+++ + Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R + +GDTV+V R+G
Sbjct: 321 TELENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHNADEIERLGVMVGDTVIVRRAG 380
Query: 392 NVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGL 451
+VIP+I + + + RP+D++ P CP+C S + +E +ARCSG C AQRK +
Sbjct: 381 DVIPQIVAVVEAQRPSDARAILFPAECPVCGSAVERLEGEAVARCSGGLF-CEAQRKEAI 439
Query: 452 QHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAI 511
+HF++R+AM++ GLG K++E+LV+ +V T DL+ +N L L+R+ K A N++ AI
Sbjct: 440 KHFAARRAMDVDGLGDKIVEQLVDKGLVKTPADLFSLNAIQLAGLERMGQKSALNLVAAI 499
Query: 512 QKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAF 571
++ TT RF++ALGIR VGE TA LAN+F L+ + A+ EQLL + +G K
Sbjct: 500 DAARSTTLPRFLFALGIREVGEATALNLANHFLTLDALRAASVEQLLEVADVGDVVAKHV 559
Query: 572 IKFINQPLHRLLISQLRDVGIYW--------------------------LNNPNTK---- 601
F+ QP + ++ L GI+W L+ + K
Sbjct: 560 YYFLRQPHNVEVLEALLAAGIHWPAIEKKEAAEQPFAGKTFVLTGTLTTLSRNDAKAALQ 619
Query: 602 --GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 648
G KV +S T+ LV G+ G KL KA +L I I E+ + ++G
Sbjct: 620 ALGAKVAGSVSAKTDVLVAGEAAGSKLTKAQELGITIWTEEELQQALQG 668
>gi|126640855|ref|YP_001083839.1| DNA ligase [Acinetobacter baumannii ATCC 17978]
gi|384130757|ref|YP_005513369.1| DNA ligase [Acinetobacter baumannii 1656-2]
gi|385236346|ref|YP_005797685.1| NAD-dependent DNA ligase [Acinetobacter baumannii TCDC-AB0715]
gi|416145409|ref|ZP_11600448.1| NAD-dependent DNA ligase [Acinetobacter baumannii AB210]
gi|421628089|ref|ZP_16068875.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC180]
gi|421658990|ref|ZP_16099216.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-83]
gi|425752768|ref|ZP_18870675.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-113]
gi|445402025|ref|ZP_21430498.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-57]
gi|445472685|ref|ZP_21452645.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC338]
gi|445480568|ref|ZP_21455643.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-78]
gi|322506977|gb|ADX02431.1| DNA ligase [Acinetobacter baumannii 1656-2]
gi|323516844|gb|ADX91225.1| DNA ligase, NAD-dependent [Acinetobacter baumannii TCDC-AB0715]
gi|333366955|gb|EGK48969.1| NAD-dependent DNA ligase [Acinetobacter baumannii AB210]
gi|408708610|gb|EKL53883.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC180]
gi|408708929|gb|EKL54191.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-83]
gi|425498999|gb|EKU65065.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-113]
gi|444769890|gb|ELW94055.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC338]
gi|444771584|gb|ELW95713.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-78]
gi|444782832|gb|ELX06707.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-57]
Length = 669
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 262/659 (39%), Positives = 389/659 (59%), Gaps = 38/659 (5%)
Query: 27 RHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHT 86
+HN AYY+ D P ISD++YD L +LK +EE+YPEL+ DS T VG + V H
Sbjct: 10 KHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPTTKVGGQALSKFESVTHV 69
Query: 87 FKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTR 146
M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE G L + TR
Sbjct: 70 VPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYENGVLVRGVTR 128
Query: 147 GDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEVRCEVLIYKKDFIKLNKYRYHLGLK 204
GDG GE+IT N+ I +P VL+ KY P LLEVR EVL+ K F KLN + G K
Sbjct: 129 GDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSGFEKLNADQEAKGEK 188
Query: 205 KFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSIC 264
F NPRNAAAG LRQL+P I + L F+A+G+ + + ++ + L W ++G I
Sbjct: 189 TFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMHDSLQWLTELGFQIA 248
Query: 265 GEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYK 324
+ + + ++ + Y++I +R NL EIDG+V K++ L Q++LGF SR PR+A AYK
Sbjct: 249 ERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQQLGFLSREPRWATAYK 308
Query: 325 FLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDT 384
F ++ ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI+R +++IGDT
Sbjct: 309 FPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEIHRLDVRIGDT 368
Query: 385 VVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECI 444
V V+R+G+VIPK+ RP ++++ +P CP+C S ++ E +ARCSG + C
Sbjct: 369 VSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVMPEGEALARCSGG-LYCA 427
Query: 445 AQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKNLLRLDRVSNK 502
AQR ++HF SRKAM+I GLG + +E L+ +++ D+Y + + + LL ++++ K
Sbjct: 428 AQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHLHEHRETLLGIEKMGEK 487
Query: 503 LANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPK 562
N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A E L P
Sbjct: 488 SVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAANVEALKKTPD 547
Query: 563 IGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------------- 601
+G T + F P + ++ +L GI+W + P
Sbjct: 548 VGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWVLTGTLEQMTR 606
Query: 602 ----------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGFS 650
G +V +S T +V G+K G KLEKA KL I +++E +F+ ++ G+
Sbjct: 607 DQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYG 665
>gi|417560103|ref|ZP_12210982.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC137]
gi|421625079|ref|ZP_16065935.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC098]
gi|254781232|sp|B0VU02.2|DNLJ_ACIBS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|395522685|gb|EJG10774.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC137]
gi|408699504|gb|EKL44980.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC098]
Length = 678
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 262/669 (39%), Positives = 394/669 (58%), Gaps = 38/669 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + + +HN AYY+ D P ISD++YD L +LK +EE+YPE + DS T VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEFVQADSPTTKVGGQA 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE
Sbjct: 69 LSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEVRCEVLIYKKDFIKL 194
G L + TRGDG GE+IT N+ I +P VL+ KY P LLEVR EVL+ K F KL
Sbjct: 128 NGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSGFEKL 187
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N + G K F NPRNAAAG LRQL+P I + L F+A+G+ + + ++ + L
Sbjct: 188 NADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMHDSLQ 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
W ++G I + + + ++ + Y++I +R NL EIDG+V K++ L Q++LGF S
Sbjct: 248 WLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQQLGFLS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R PR+A AYKF ++ ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI
Sbjct: 308 REPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEI 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
+R +++IGDTV V+R+G+VIPK+ RP ++++ +P CP+C S ++ E +A
Sbjct: 368 HRLDVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVMPEGEALA 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKN 492
RCSG + C AQR ++HF SRKAM+I GLG + +E L+ +++ D+Y + + +
Sbjct: 428 RCSGG-LYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHLHEHRET 486
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A
Sbjct: 487 LLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA 546
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
E L P +G T + F P + ++ +L GI+W + P
Sbjct: 547 NVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWV 605
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G +V +S T +V G+K G KLEKA KL I +++E +
Sbjct: 606 LTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETD 665
Query: 642 FVKIVKGFS 650
F+ ++ G+
Sbjct: 666 FLSLMAGYG 674
>gi|262375659|ref|ZP_06068891.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145]
gi|262309262|gb|EEY90393.1| DNA ligase, NAD-dependent [Acinetobacter lwoffii SH145]
Length = 679
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 269/673 (39%), Positives = 400/673 (59%), Gaps = 46/673 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + L +HN AYY+ D P I D++YDQL +LK +E++YP+L+ DS T VG G
Sbjct: 10 QMRQLIQLLAKHNHAYYVMDQPSIEDSEYDQLFHQLKALEQQYPDLIQSDSPTDKVG--G 67
Query: 77 GENSKYVH--HTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLR 134
SK+V H M+SL N F+ ED++ F +RI L + IEY ELKFDG+A++L
Sbjct: 68 QALSKFVTVTHAVPMLSLGNVFNQEDLLAFARRIEERLP-NQKIEYDVELKFDGLAISLW 126
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYP-----PELLEVRCEVLIYKK 189
YE+G L + TRGDG GE+IT N+ I +P +L+ P P+LLEVR EVL+ K
Sbjct: 127 YEHGVLTRGVTRGDGETGEDITQNVRTIRNLPKLLS---PVNGIIPDLLEVRGEVLMPKS 183
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F KLN G K F NPRNAAAG LRQL+P I ++ L F+A+G+ + + ++
Sbjct: 184 GFEKLNAANAAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCVPHHGQTTM 243
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
S L W + G ++ + + + + + Y++I +R +L EIDG+V K+N L Q++
Sbjct: 244 SASLEWLHQFGFAVGERHFICDSIQDVQKVYEQIIDERASLSVEIDGMVIKVNDLKQQQQ 303
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF SR PR+A AYKF + ALT ++ IN Q+GRTG +TPVA L PV + G+T++ TLH
Sbjct: 304 LGFLSREPRWATAYKFPAVAALTTVENINWQVGRTGTLTPVARLNPVAVGGVTVSNVTLH 363
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI+R +++IGDTV V+RSG+VIPK+ RP D+ +P CP+C+S ++ E
Sbjct: 364 NIGEIHRLDVRIGDTVSVYRSGDVIPKVEKVWPEFRPVDAVEVHLPEQCPVCDSPVVMPE 423
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI- 488
+ARCSG + C AQR ++HF SRKAM+I GLG + E L++ N++ D+Y +
Sbjct: 424 GEALARCSGG-LYCAAQRIEAIRHFVSRKAMDIEGLGDRWAESLLHLNLLNDVSDIYHLH 482
Query: 489 -NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLE 547
+ + LL ++++ K N+L AI+ SK TT + FIYALGIR VGETTA+ LAN F+ L+
Sbjct: 483 EHRETLLGIEKMGAKSVQNLLDAIENSKKTTLAAFIYALGIRGVGETTARMLANTFQTLD 542
Query: 548 CMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNN 597
+ +A E L P +G T + + F P + ++ +L GI+W LN
Sbjct: 543 ALRQADLEALKKTPDVGDITAEWILDFFQAPHNLEVLDRLLAAGIHWDAPIAPTRQPLNG 602
Query: 598 PN--------------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
+ G +V +S T +V G+K G KL+KA KL I ++
Sbjct: 603 ESWVVTGTLSSMGRDDATQLLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAEKLGIPVI 662
Query: 638 DEKNFVKIVKGFS 650
+E+ F+ +++ +
Sbjct: 663 NEQQFIGLMQDYG 675
>gi|117618613|ref|YP_855770.1| NAD-dependent DNA ligase [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|166215386|sp|A0KHL9.1|DNLJ_AERHH RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|117560020|gb|ABK36968.1| DNA ligase, NAD-dependent [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 668
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 260/649 (40%), Positives = 377/649 (58%), Gaps = 34/649 (5%)
Query: 32 YYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMS 91
YY+ DNP + D +YD+L+ EL +E ++PEL T S + VG K V H M+S
Sbjct: 22 YYVLDNPTVPDAEYDRLMRELIVLEAEHPELKTPASPSVRVGGQPLTAFKQVRHEIPMLS 81
Query: 92 LDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNI 151
LDN FS E++ F +R+ + LK + + E K DG+AV+L Y G L QA+TRGDG
Sbjct: 82 LDNVFSGEELQAFEQRMRDRLKREVSFTFCCEPKLDGLAVSLLYVAGQLVQAATRGDGTT 141
Query: 152 GENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRN 211
GE IT N+ I IPL L + P LEVR EV + K F +N G K F NPRN
Sbjct: 142 GEEITENVRTIKAIPLSLRGEGWPARLEVRGEVFMPKAGFEAMNAKALAAGEKVFVNPRN 201
Query: 212 AAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVLS 271
AAAG LRQL+ +I ++ L F+A+GVG + G + SH LN ++ GL + E +
Sbjct: 202 AAAGSLRQLDSRITASRPLAFYAYGVG-VGGEQLGGSHFGRLNQLKEWGLPLSPEVKLKE 260
Query: 272 GVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEAL 331
G F+ I +R LPYEIDGVVYK++ + Q++LGF +RAPR+A A+KF ++E +
Sbjct: 261 GAAGCQAFHDDILARRGELPYEIDGVVYKVDAIPLQEELGFVARAPRWATAHKFPAQEEM 320
Query: 332 TKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSG 391
T+++ + Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R + IGDTV+V R+G
Sbjct: 321 TELENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHNADEIERLGVMIGDTVIVRRAG 380
Query: 392 NVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGL 451
+VIP+I + + + RP D++ P CP+C S + +E + RCSG C AQRK +
Sbjct: 381 DVIPQIVAVVEAQRPADARAILFPTECPVCGSAVERLEGEAVTRCSGGLF-CEAQRKEAI 439
Query: 452 QHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAI 511
+HF++R+AM++ GLG K++E+LV+ +V T DL+ +N L L+R+ K A N++ AI
Sbjct: 440 KHFAARRAMDVDGLGDKIVEQLVDKGLVKTPADLFSLNAIQLAGLERMGQKSALNLVAAI 499
Query: 512 QKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAF 571
++ TT RF++ALGIR VGE TA LAN+F L+ + A+ EQLL + +G K
Sbjct: 500 DAARSTTLPRFLFALGIREVGEATALNLANHFLTLDALRAASVEQLLEVADVGDIVAKHV 559
Query: 572 IKFINQPLHRLLISQLRDVGIYW--------------------------LNNPNTK---- 601
F+ QP + ++ L GI+W L+ + K
Sbjct: 560 YYFLRQPHNIEVLEALLAAGIHWPAIEKKEASEQPFAGKTFVLTGTLTTLSRNDAKAALQ 619
Query: 602 --GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 648
G KV +S T+ LV G+ G KL KA +L I + E+ + ++G
Sbjct: 620 ALGAKVAGSVSAKTDVLVAGEAAGSKLVKAQELGITVWSEEELQQALQG 668
>gi|421655914|ref|ZP_16096228.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-72]
gi|408506937|gb|EKK08641.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-72]
Length = 669
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 262/659 (39%), Positives = 389/659 (59%), Gaps = 38/659 (5%)
Query: 27 RHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHT 86
+HN AYY+ D P ISD++YD L +LK +EE+YPEL+ DS T VG + V H
Sbjct: 10 KHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPTTKVGGQALSKFESVTHV 69
Query: 87 FKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTR 146
M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE G L + TR
Sbjct: 70 VPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYENGVLVRGVTR 128
Query: 147 GDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEVRCEVLIYKKDFIKLNKYRYHLGLK 204
GDG GE+IT N+ I +P VL+ KY P LLEVR EVL+ K F KLN + G K
Sbjct: 129 GDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSGFEKLNADQEAKGEK 188
Query: 205 KFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSIC 264
F NPRNAAAG LRQL+P I + L F+A+G+ + + ++ + L W ++G I
Sbjct: 189 TFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMHDSLQWLTELGFQIA 248
Query: 265 GEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYK 324
+ + + ++ + Y++I +R NL EIDG+V K++ L Q++LGF SR PR+A AYK
Sbjct: 249 ERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQQLGFLSREPRWATAYK 308
Query: 325 FLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDT 384
F ++ ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI+R +++IGDT
Sbjct: 309 FPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEIHRLDVRIGDT 368
Query: 385 VVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECI 444
V V+R+G+VIPK+ RP ++++ +P CP+C S ++ E +ARCSG + C
Sbjct: 369 VSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVMPEGEALARCSGG-LYCA 427
Query: 445 AQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKNLLRLDRVSNK 502
AQR ++HF SRKAM+I GLG + +E L+ +++ D+Y + + + LL ++++ K
Sbjct: 428 AQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHLHEHRETLLGIEKMGEK 487
Query: 503 LANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPK 562
N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A E L P
Sbjct: 488 SVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKTANVEALKKTPD 547
Query: 563 IGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------------- 601
+G T + F P + ++ +L GI+W + P
Sbjct: 548 VGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWVLTGTLEQMTR 606
Query: 602 ----------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGFS 650
G +V +S T +V G+K G KLEKA KL I +++E +F+ ++ G+
Sbjct: 607 DQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYG 665
>gi|262379150|ref|ZP_06072306.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164]
gi|262298607|gb|EEY86520.1| DNA ligase, NAD-dependent [Acinetobacter radioresistens SH164]
Length = 682
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 270/672 (40%), Positives = 402/672 (59%), Gaps = 43/672 (6%)
Query: 18 VTELKKELH---RHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGL 74
VT++++ + +HN AYY+ D P ISDN+YD L +LK +EE+YP+L+ D+ T+ VG
Sbjct: 12 VTQMRQLIQLIAQHNHAYYVMDQPSISDNEYDSLFHQLKALEEQYPDLVQNDTPTRRVG- 70
Query: 75 VGGENSKY--VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
G SK+ V H M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++
Sbjct: 71 -GQALSKFMSVRHAVPMLSLGNVFNKEDLFAFARRVEERLP-GQQVKYEVELKLDGLAIS 128
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIP--LVLNIKYPPELLEVRCEVLIYKKD 190
L YE G L + TRGDG GE+IT N+ I +P L + P+LLEVR EVLI K
Sbjct: 129 LWYENGELVRGVTRGDGETGEDITQNVKTIRNLPKYLYSDQAAIPKLLEVRGEVLIPKTG 188
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F+KLN G K F NPRNAAAG LRQL+P I + L F+A+G+ + + +S +
Sbjct: 189 FLKLNAENEAKGEKIFANPRNAAAGSLRQLDPGIAAARPLAFYAYGIAQCEPEHHLNSMT 248
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
E L+W + +G I + + ++ Y+KI +R +L EIDG+V K++ L QK+L
Sbjct: 249 ESLHWLRDLGFEIAERQFLCDSIEEVQRRYEKIMEERADLGVEIDGMVVKVDSLKQQKQL 308
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF SR PR+A AYKF + ALT ++ I+ Q+GRTGI+TPVA L PV + G+T++ TLHN
Sbjct: 309 GFLSREPRWATAYKFPAIAALTTVENIDWQVGRTGILTPVARLNPVFVGGVTVSNVTLHN 368
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI+R +++IGDTV V+R+G+VIPK+ RP+ +++ +P CP+C S ++ E
Sbjct: 369 IGEIHRLDVRIGDTVSVYRTGDVIPKVEKVWPEFRPDTAEVINLPETCPVCASPVVMPEG 428
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI-- 488
+ARCSG + C AQR ++HF SRKAM+I GLG + +E L++ ++ D+Y +
Sbjct: 429 EALARCSGE-LYCAAQRIESIRHFVSRKAMDIEGLGDRWVESLLHLELLKDVSDIYHLHQ 487
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
+ LL ++++ K N++ AI++SK TT +RFIYALGIR VGETTA+ LAN F+ LE
Sbjct: 488 HRNTLLGIEKMGEKSVQNLINAIEQSKKTTLARFIYALGIRGVGETTARMLANSFQTLEA 547
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP 598
+ +A + L +P +G T + F + +I +L GI+W LN
Sbjct: 548 LQQADVDSLKKVPDVGDITAEWIYDFFRAEHNLEVIDRLLAAGIHWDAPIASTRQPLNGE 607
Query: 599 N--------------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
+ G +V +S T +V G+K G KLEKA KLNI+ L+
Sbjct: 608 SWVLTGTLEHLTREQATQMLQALGARVSGSVSAKTKCVVAGEKAGSKLEKAQKLNIQTLN 667
Query: 639 EKNFVKIVKGFS 650
EK F+++++ +
Sbjct: 668 EKQFIELMETYG 679
>gi|417548020|ref|ZP_12199101.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-18]
gi|400388319|gb|EJP51391.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-18]
Length = 669
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 261/659 (39%), Positives = 389/659 (59%), Gaps = 38/659 (5%)
Query: 27 RHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHT 86
+HN AYY+ D P ISD++YD L +LK +EE+YPEL+ DS T VG + V H
Sbjct: 10 KHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPTMKVGGQALSKFESVTHV 69
Query: 87 FKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTR 146
M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE G L + TR
Sbjct: 70 VPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYENGVLVRGVTR 128
Query: 147 GDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEVRCEVLIYKKDFIKLNKYRYHLGLK 204
GDG GE+IT N+ I +P VL+ KY P LLEVR EVL+ K F KLN + G K
Sbjct: 129 GDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSGFEKLNADQEAKGEK 188
Query: 205 KFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSIC 264
F NPRNAAAG LRQL+P I + L F+A+G+ + + ++ + L W ++G I
Sbjct: 189 TFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMHDSLQWLTELGFQIA 248
Query: 265 GEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYK 324
+ + + ++ + Y++I +R NL EIDG+V K++ L Q++LGF SR PR+A AYK
Sbjct: 249 ERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQQLGFLSREPRWATAYK 308
Query: 325 FLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDT 384
F ++ ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI+R ++++GDT
Sbjct: 309 FPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEIHRLDVRVGDT 368
Query: 385 VVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECI 444
V V+R+G+VIPK+ RP ++++ +P CP+C S ++ E +ARCSG + C
Sbjct: 369 VSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVMPEGEALARCSGG-LYCA 427
Query: 445 AQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKNLLRLDRVSNK 502
AQR ++HF SRKAM+I GLG + +E L+ +++ D+Y + + + LL ++++ K
Sbjct: 428 AQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHLHEHRETLLGIEKMGEK 487
Query: 503 LANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPK 562
N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A E L P
Sbjct: 488 SVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAANVEALKKTPD 547
Query: 563 IGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------------- 601
+G T + F P + ++ +L GI+W + P
Sbjct: 548 VGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWVLTGTLEQMTR 606
Query: 602 ----------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGFS 650
G +V +S T +V G+K G KLEKA KL I +++E +F+ ++ G+
Sbjct: 607 DQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYG 665
>gi|339477872|ref|YP_004706692.1| NAD-dependent DNA ligase LigA [Candidatus Moranella endobia PCIT]
gi|338172423|gb|AEI74824.1| NAD-dependent DNA ligase LigA [Candidatus Moranella endobia PCIT]
Length = 682
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 267/675 (39%), Positives = 401/675 (59%), Gaps = 40/675 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPI--ISDNKYDQLLFELKKIEEKYPELLTKDSL 68
++ R+ L+++L YY+ PI + D++YD+++ EL +E KYPELLT DS
Sbjct: 7 LEQIEQRIIRLREQLRHWEDLYYVDSLPIPTVPDSEYDRVMAELCTLEIKYPELLTPDSP 66
Query: 69 TQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDG 128
+Q +G + VHH M+SLDN + ++D + F+KR+ + LK + Y E+K DG
Sbjct: 67 SQRIGGKAMNHFGQVHHEIPMLSLDNSYEEKDFLAFDKRVRDRLKHDSAMTYCCEIKLDG 126
Query: 129 IAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVL-NIKYPPELLEVRCEVLIY 187
+AV+L YE GYL +A+TRGDG GE+IT N+ I IPL L N P LLE+R EV +
Sbjct: 127 LAVSLLYENGYLVRAATRGDGTTGEDITVNVRTILTIPLRLTNHCNLPRLLEIRGEVFMP 186
Query: 188 KKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPS 247
+ F +LN G K FTNPRNAAAG LRQL+P I + L F+ +GVG L +P
Sbjct: 187 EAIFQRLNATAKRTGSKVFTNPRNAAAGSLRQLDPAITARRSLMFYCYGVGLLEDGTLPE 246
Query: 248 SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQ 307
SH E+L ++ G+ + +G ++I FYKK++ R +L ++IDGVV K++ L Q
Sbjct: 247 SHWEMLQLFKVWGIPVSNFILQCTGSLEVINFYKKVHDARSHLGFDIDGVVIKVDSLLLQ 306
Query: 308 KKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRAT 367
++LG +RAPR+A+AYKF ++E LT+++ + Q+GRTG++TPVA L+PV++ G+ I+ AT
Sbjct: 307 QRLGVITRAPRWAMAYKFPAQEQLTRVRDVEFQVGRTGVVTPVARLEPVMVAGVRISNAT 366
Query: 368 LHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIY 427
LHN +E+ R + IGD V++ R+G+V+P+I I S RP D++ P CPIC+S I
Sbjct: 367 LHNVNEVERLGLMIGDKVIIRRAGDVVPQIVGIIYSERPTDARPVVFPYYCPICSSNIES 426
Query: 428 IESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYK 487
E + RC+ I C AQRK ++HF SR+AM + G+G K+I +LV +V T VDL++
Sbjct: 427 FEGKTVWRCTAGLI-CAAQRKEAMKHFVSRRAMYVKGMGDKIIAQLVERELVKTPVDLFR 485
Query: 488 INFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLE 547
+N + L RL+ + K A N+L A++++K TT +RF+YALGIR VGE+TA LA + +E
Sbjct: 486 LNQEMLTRLEHIGPKSAQNLLAALEQAKHTTLARFLYALGIREVGESTAANLAAAYGTIE 545
Query: 548 CMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRD--VGIYW----------L 595
+ A + L+++P IG F + +I L + +GI+W +
Sbjct: 546 ALTIANIDSLISLPNIGKIVATNVHNFFRDNHNLEVIEALLNPMIGIHWAEPVVTSVAKV 605
Query: 596 NNPNTK------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIK 631
NNP G KV + IS NTN L+ G+ PG KL +A K
Sbjct: 606 NNPFAGKNIVFTGSLNILSRDDAKDWLVAFGAKVSSHISYNTNLLIVGKAPGLKLAQAQK 665
Query: 632 LNIKILDEKNFVKIV 646
I I+ E ++++
Sbjct: 666 QKIPIMYEAEMMRLI 680
>gi|445487625|ref|ZP_21457896.1| DNA ligase (NAD+) [Acinetobacter baumannii AA-014]
gi|444768515|gb|ELW92730.1| DNA ligase (NAD+) [Acinetobacter baumannii AA-014]
Length = 669
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 262/659 (39%), Positives = 389/659 (59%), Gaps = 38/659 (5%)
Query: 27 RHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHT 86
+HN AYY+ D P ISD++YD L +LK +EE+YPEL+ DS T VG + V H
Sbjct: 10 KHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPTTKVGGQALSKFESVTHV 69
Query: 87 FKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTR 146
M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE G L + TR
Sbjct: 70 VPMLSLGNVFNKEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYENGVLVRGVTR 128
Query: 147 GDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEVRCEVLIYKKDFIKLNKYRYHLGLK 204
GDG GE+IT N+ I +P VL+ KY P LLEVR EVL+ K F KLN + G K
Sbjct: 129 GDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSGFEKLNADQEAKGEK 188
Query: 205 KFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSIC 264
F NPRNAAAG LRQL+P I + L F+A+G+ + + ++ + L W ++G I
Sbjct: 189 TFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMHDSLQWLTELGFQIA 248
Query: 265 GEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYK 324
+ + + ++ + Y++I +R NL EIDG+V K++ L Q++LGF SR PR+A AYK
Sbjct: 249 ERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQQLGFLSREPRWATAYK 308
Query: 325 FLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDT 384
F ++ ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI+R +++IGDT
Sbjct: 309 FPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEIHRLDVRIGDT 368
Query: 385 VVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECI 444
V V+R+G+VIPK+ RP ++++ +P CP+C S ++ E +ARCSG + C
Sbjct: 369 VSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVMPEGEALARCSGG-LYCA 427
Query: 445 AQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKNLLRLDRVSNK 502
AQR ++HF SRKAM+I GLG + +E L+ +++ D+Y + + + LL ++++ K
Sbjct: 428 AQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHLHEHRETLLGIEKMGEK 487
Query: 503 LANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPK 562
N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A E L P
Sbjct: 488 SVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAANVEALKKTPD 547
Query: 563 IGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------------- 601
+G T + F P + ++ +L GI+W + P
Sbjct: 548 VGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWVLTGTLEQMTR 606
Query: 602 ----------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGFS 650
G +V +S T +V G+K G KLEKA KL I +++E +F+ ++ G+
Sbjct: 607 DQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYG 665
>gi|378824197|ref|ZP_09846729.1| DNA ligase [Sutterella parvirubra YIT 11816]
gi|378596974|gb|EHY30330.1| DNA ligase [Sutterella parvirubra YIT 11816]
Length = 778
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 256/679 (37%), Positives = 397/679 (58%), Gaps = 50/679 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL+ ++ + AYY+ D+PI+SD +YD+L EL +E ++PEL++ S T V
Sbjct: 41 RMRELEAKISAADHAYYVLDDPILSDEEYDRLYHELAALEARFPELVSPASPTHRVSGAV 100
Query: 77 GENSKYVHHTFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAV 131
E+ V H M+S+ + F+ E F++R+ EL LT + Y ELKFDG+A+
Sbjct: 101 REDLPKVTHAQPMLSIHTETDFTAEGAKAFDERVRKELGLTDEDAPVVYDCELKFDGLAM 160
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
++RYE G L A+TRGDG GE++T N+ I IPL L+ P++ EVR EV++++ DF
Sbjct: 161 SMRYEKGVLVLAATRGDGTTGEDVTANVRTIRTIPLKLDGV--PDVFEVRGEVIMHRADF 218
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
LN+ + G K F NPRNAAAG LRQL+PK+ + LHF+A+ +GE + +S +E
Sbjct: 219 HALNERQLKDGKKTFVNPRNAAAGSLRQLDPKVTAARRLHFYAYALGECSAPDFAASQTE 278
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
LL+ ++ +GL + + G L F+ ++ R LP++IDGVVYK++ Q++LG
Sbjct: 279 LLDRFKALGLPVADMRRRVEGPEALAAFHDEVAANRAELPFDIDGVVYKVDDFGLQRELG 338
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F SR PR+A A+K+ +EA+T ++AI++Q+GRTG +TPVA L PV + G+T++ ATLHNE
Sbjct: 339 FLSREPRWACAHKYPPEEAVTVLEAIDVQVGRTGKLTPVARLAPVFVGGVTVSNATLHNE 398
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
S I ++ IGD+VVV R+G+VIP++ + RP ++ F++P+ CP+C S I E
Sbjct: 399 SFIAELDLCIGDSVVVRRAGDVIPEVVRVLHERRPEGARRFQMPDHCPVCGSATIRDEEE 458
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
RC+G C AQ K + HF+SR+A I GLG+K++ LV+ +V T DL+ + +
Sbjct: 459 KDTRCTGGLF-CPAQVKLAIVHFASRRAAGIDGLGEKIVTMLVDEGLVSTPADLFHLTHE 517
Query: 492 NLLR-----------LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELA 540
L + R+ K A N+L ++++K TTF+RFI+ALG RHVGE TA LA
Sbjct: 518 ALTDFITATKGTEKPVRRMGPKAAQNLLDNLERAKSTTFARFIFALGCRHVGEATALTLA 577
Query: 541 NYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------ 594
+F L+ + AT E+L ++ +G ++ F +P + +I +L G++W
Sbjct: 578 THFGTLDALRNATLEELTHVDDVGEIVGESVHAFFKEPHNEEVIGELITAGMHWPAVEKK 637
Query: 595 -------------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKA 629
L K G KV +SK T+++V G + G KLEKA
Sbjct: 638 TTASAVAGKTFVITGTLPTLKRDAAKDMLIAAGAKVAGSVSKKTDFVVAGAEAGSKLEKA 697
Query: 630 IKLNIKILDEKNFVKIVKG 648
L +K++DE + ++
Sbjct: 698 EALGVKVIDEAEMLAMLSA 716
>gi|169634132|ref|YP_001707868.1| DNA ligase [Acinetobacter baumannii SDF]
gi|169152924|emb|CAP01965.1| DNA ligase [Acinetobacter baumannii]
Length = 691
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 264/683 (38%), Positives = 399/683 (58%), Gaps = 38/683 (5%)
Query: 3 FHAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPEL 62
F K + + + ++ +L + + +HN AYY+ D P ISD++YD L +LK +EE+YPE
Sbjct: 8 FMVNKIMAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEF 67
Query: 63 LTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIA 122
+ DS T VG + V H M+SL N F+ ED+ F +R+ L + ++Y
Sbjct: 68 VQADSPTTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEV 126
Query: 123 ELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEV 180
ELK DG+A++L YE G L + TRGDG GE+IT N+ I +P VL+ KY P LLEV
Sbjct: 127 ELKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEV 186
Query: 181 RCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL 240
R EVL+ K F KLN + G K F NPRNAAAG LRQL+P I + L F+A+G+ +
Sbjct: 187 RGEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQC 246
Query: 241 RGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYK 300
+ ++ + L W ++G I + + + ++ + Y++I +R NL EIDG+V K
Sbjct: 247 EPNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVK 306
Query: 301 INCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDG 360
++ L Q++LGF SR PR+A AYKF ++ ALT ++ I+ Q+GRTG +TPVA L PV + G
Sbjct: 307 VDDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGG 366
Query: 361 ITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPI 420
+T++ TLHN EI+R +++IGDTV V+R+G+VIPK+ RP ++++ +P CP+
Sbjct: 367 VTVSNVTLHNIGEIHRLDVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPV 426
Query: 421 CNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVV 480
C S ++ E +ARCSG + C AQR ++HF SRKAM+I GLG + +E L+ +++
Sbjct: 427 CASPVVMPEGEALARCSGG-LYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLK 485
Query: 481 TAVDLYKI--NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKE 538
D+Y + + + LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+
Sbjct: 486 DVADIYHLHEHRETLLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARM 545
Query: 539 LANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP 598
LAN F+ LE + A E L P +G T + F P + ++ +L GI+W + P
Sbjct: 546 LANTFQTLEALKAANVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAP 604
Query: 599 NTK-------------------------------GGKVVNFISKNTNYLVKGQKPGKKLE 627
G +V +S T +V G+K G KLE
Sbjct: 605 TAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLE 664
Query: 628 KAIKLNIKILDEKNFVKIVKGFS 650
KA KL I +++E +F+ ++ G+
Sbjct: 665 KAAKLGIPVMNETDFLSLMAGYG 687
>gi|365538337|ref|ZP_09363512.1| NAD-dependent DNA ligase LigA [Vibrio ordalii ATCC 33509]
Length = 670
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 271/667 (40%), Positives = 405/667 (60%), Gaps = 34/667 (5%)
Query: 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG 73
+ ++++L++ LH H + YY+ DNP I D +YD+L+ EL ++E +YPEL+T DS + VG
Sbjct: 4 IEHKLSQLRETLHYHAVRYYVEDNPEIPDAEYDRLMRELLELELQYPELVTADSPSLRVG 63
Query: 74 LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNL 133
E V H M+SLDN F ++++ F+KR+ + + + E K DG+AV+L
Sbjct: 64 GKPLEGFAQVTHEIPMLSLDNVFDEKELDAFHKRMQDRIPSAHFNAFCCEPKLDGLAVSL 123
Query: 134 RYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIK 193
YE G L QA+TRGDG +GENIT N+ I IPL L K P LEVR EV + K F +
Sbjct: 124 LYENGVLVQAATRGDGAVGENITENVRTISAIPLKLQGKGWPVRLEVRGEVFMPKAGFER 183
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253
LN+ G K F NPRNAAAG LRQL+ KI + L+F+A+ VG + G + SSH +
Sbjct: 184 LNQQALKKGEKTFVNPRNAAAGSLRQLDSKITAQRPLNFYAYSVGVIEGAELASSHYQRF 243
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
+ GL +C E ++S ++++ E+Y+ I +R L YEIDGVV K++ + Q+KLGF
Sbjct: 244 LQLKGWGLPMCPETRLVSSMDEVKEYYQSILTRRAQLAYEIDGVVIKVDDIELQQKLGFV 303
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
+RAPR+A+AYKF ++E +T + + Q+GRTG ITPVA L+ V + G+T++ ATLHN E
Sbjct: 304 ARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLESVFVGGVTVSNATLHNADE 363
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
I R ++IGD+V++ R+G+VIP+I S +L R + P CP+CNS I +E +
Sbjct: 364 IERLGVKIGDSVIIRRAGDVIPQIVSVLLDRRSDSVVDIVFPQYCPVCNSDIERVEGEAV 423
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
ARC+G + C AQRK L+HF SRKA+++ GLG+K+IE+LV+ +V T DL+++ L
Sbjct: 424 ARCTGGLV-CQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDKEMVSTPADLFRLKAGQL 482
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
L+R+ K A NI+ A+ +K+TT RF+Y+LGIR VGE TA LA +F +L+ + +AT
Sbjct: 483 TVLERMGPKSAQNIVNALNAAKMTTLPRFLYSLGIREVGEATAANLALHFGSLDKIRQAT 542
Query: 554 EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--NPNTK---------- 601
E+LL + +G F Q ++ +I++L ++GI W N P+
Sbjct: 543 HEELLEVQDVGVIVASHITSFFEQDKNQRVINELIELGIQWPNIEKPSQDAILPLLGKVV 602
Query: 602 ---------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
G KV +SKNT+ L G+ G KL KA +L I+I E+
Sbjct: 603 VLTGSLSKLSRSDAKAALQELGAKVTGSVSKNTDILFAGEAAGSKLVKAQELGIEIRSEQ 662
Query: 641 NFVKIVK 647
+ ++++K
Sbjct: 663 DLLELMK 669
>gi|417545805|ref|ZP_12196891.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC032]
gi|421663709|ref|ZP_16103853.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC110]
gi|421667579|ref|ZP_16107645.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC087]
gi|421670373|ref|ZP_16110371.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC099]
gi|400383693|gb|EJP42371.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC032]
gi|408713048|gb|EKL58223.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC110]
gi|410383759|gb|EKP36279.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC087]
gi|410385052|gb|EKP37547.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC099]
Length = 678
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 261/669 (39%), Positives = 394/669 (58%), Gaps = 38/669 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + + +HN AYY+ D P ISD++YD L +LK +EE+YPE + DS T VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEFVQADSPTTKVGGQA 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE
Sbjct: 69 LSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEVRCEVLIYKKDFIKL 194
G L + TRGDG GE+IT N+ I +P VL+ KY P LLEVR EVL+ K F KL
Sbjct: 128 NGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSGFEKL 187
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N + G K F NPRNAAAG LRQL+P I + L F+A+G+ + + ++ + L
Sbjct: 188 NADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMHDSLQ 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
W ++G I + + + ++ + Y++I +R NL EIDG+V K++ L Q++LGF S
Sbjct: 248 WLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQQLGFLS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R PR+A AYKF ++ ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI
Sbjct: 308 REPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEI 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
+R ++++GDTV V+R+G+VIPK+ RP ++++ +P CP+C S ++ E +A
Sbjct: 368 HRLDVRVGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVMPEGEALA 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKN 492
RCSG + C AQR ++HF SRKAM+I GLG + +E L+ +++ D+Y + + +
Sbjct: 428 RCSGG-LYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHLHEHRET 486
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A
Sbjct: 487 LLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA 546
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
E L P +G T + F P + ++ +L GI+W + P
Sbjct: 547 NVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWV 605
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G +V +S T +V G+K G KLEKA KL I +++E +
Sbjct: 606 LTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETD 665
Query: 642 FVKIVKGFS 650
F+ ++ G+
Sbjct: 666 FLSLMAGYG 674
>gi|319941620|ref|ZP_08015944.1| DNA ligase [Sutterella wadsworthensis 3_1_45B]
gi|319804850|gb|EFW01704.1| DNA ligase [Sutterella wadsworthensis 3_1_45B]
Length = 745
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 259/679 (38%), Positives = 389/679 (57%), Gaps = 50/679 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ +L+ EL R N YY+ D P + D +YD+ ELK +E ++PEL ++ S T VG
Sbjct: 60 RMHQLETELERWNYEYYVLDEPSVPDAEYDRAFNELKALEARFPELKSRTSPTLRVGGAV 119
Query: 77 GENSKYVHHTFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAV 131
K V H M+S+ + FS F++R+ + L L+ +EY ELKFDG+A
Sbjct: 120 RTGFKKVRHDVPMLSIHTETDFSAAGAAAFDERVRSALGLSPEDPPVEYDCELKFDGLAT 179
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
NLRYE G L +ASTRGDG GE++T N+ I IPL LN K P ++LEVR E +++K DF
Sbjct: 180 NLRYEKGVLTEASTRGDGVEGEDVTANVRTIRTIPLRLNGKVP-DILEVRGECIMHKADF 238
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
+ LN + G K F NPRNAAAG LRQL+ + + LHF+ + +GE+ + S
Sbjct: 239 LALNARQEAAGEKPFANPRNAAAGSLRQLDSSVTAQRTLHFYGYSLGEV-SEPFAETQSG 297
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
+L+ + ++G + V+ G L F+ K+ R +LP+EIDGVVYK+N L +++LG
Sbjct: 298 VLDRFAELGFPVAHMREVVKGPEALAAFHDKVAAARASLPFEIDGVVYKVNSLELEEELG 357
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +R PR+A A+K+ +E LT++ I++Q+GRTG +TPVA L PV + G+T++ ATLHNE
Sbjct: 358 FIAREPRWACAHKYPPEEVLTQVLGIDVQVGRTGRLTPVARLAPVYVGGVTVSNATLHNE 417
Query: 372 SEIYRK-NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
+ + ++++GDTVV+ R+G+VIP+I + RP +K+F++P++CPIC S +I E
Sbjct: 418 DHVVKDLDLRVGDTVVLRRAGDVIPEILRVVKERRPAGTKVFEMPHVCPICGSAVIRDEE 477
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
RC+G + C AQ K + HF++R+AM I GLG+K+++ LV+ +V T DL+ +
Sbjct: 478 EKDMRCTGGLV-CPAQMKLSIVHFAARRAMGIDGLGEKIVDMLVDEGLVKTPADLFGLTL 536
Query: 491 KNLLRLD-----------RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKEL 539
+ L R+ K A N+L +IQ S TT +RF++ALG RHVGE TA L
Sbjct: 537 EALTAPTTATAGSEKPEKRMGPKAAANLLASIQASTHTTLARFVFALGCRHVGEATALGL 596
Query: 540 ANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPN 599
AN+F L + A+ E L +P +G ++ F +P +R +I L GI W
Sbjct: 597 ANHFGTLSAIENASMEALTGVPDVGEVVAESIYAFFREPHNRTVIDALIARGIRWPAVEK 656
Query: 600 T------------------------------KGGKVVNFISKNTNYLVKGQKPGKKLEKA 629
T +G KV +S+ T +V G G KL KA
Sbjct: 657 TAPSLVSGKTFVLTGTLPTLSRDEAKDRLTAQGAKVAGSVSRRTWCVVAGADAGSKLSKA 716
Query: 630 IKLNIKILDEKNFVKIVKG 648
+L I ++DE + ++ G
Sbjct: 717 EELGIPVIDEAKLLMLLDG 735
>gi|56460801|ref|YP_156082.1| NAD-dependent DNA ligase [Idiomarina loihiensis L2TR]
gi|81362279|sp|Q5QUK1.1|DNLJ_IDILO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|56179811|gb|AAV82533.1| NAD-dependent DNA ligase [Idiomarina loihiensis L2TR]
Length = 670
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 261/664 (39%), Positives = 385/664 (57%), Gaps = 37/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL++ L+R+N YY D P + D +YD+L ELK +E ++P+L + S T VG
Sbjct: 8 RMQELEQLLNRYNQEYYENDEPSVPDAEYDRLFRELKTLETEHPDLKSAQSPTMKVGGKP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN FS ++ F+KR+ L + + + E K DG AV+L YE
Sbjct: 68 LGQFRSVEHEVPMLSLDNAFSVDEFEAFSKRVEQRLDTNQTVTFCCEPKLDGAAVSLLYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L + +TRGDG GE+IT N+ I +PL L+ P E LEVR EV++ F + N+
Sbjct: 128 NGLLVRGATRGDGQSGEDITENVKTIRNVPLKLSGDVP-ERLEVRGEVVMPLGAFERFNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL-RGMNMPSSHSELLNW 255
K F NPRNAAAG LRQL+ +I + LHF+A+ +G + +P SH + L
Sbjct: 187 QARQREEKVFANPRNAAAGSLRQLDSRITAKRPLHFYAYSLGLISETTQLPDSHHQRLLQ 246
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ GL + E + V ++Y+ I +R L Y+IDGVV+K++ + Q+ LGF +R
Sbjct: 247 LKDWGLPVNIEIKTVDSVQGCDDYYEAILARRDTLNYDIDGVVFKVDSIRLQQDLGFVAR 306
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A+A KF ++E LT I ++ Q+GRTG ITPVA L+PV + G+T++ ATLHN EI
Sbjct: 307 APRWAIARKFPAQEQLTTITGVDFQVGRTGAITPVARLEPVNVGGVTVSNATLHNADEIE 366
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
R ++IGD V + R+G+VIP++ S I RP ++K + P CPIC S I +E +AR
Sbjct: 367 RLGVRIGDCVSIRRAGDVIPQVVSVIKDKRPENTKAIEFPQHCPICQSDIERVEGEAVAR 426
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G + C AQRK ++HF+SRKAM+I GLG K++E+LV + + + DLY+++ L
Sbjct: 427 CTGG-LYCAAQRKEAIKHFASRKAMDIDGLGDKIVEQLVERDWIKSPADLYRLSKAELAT 485
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L R+ K A N+ AI+ ++ TT +RFIYALGIR VGE TA LAN+FKNL+ + A E
Sbjct: 486 LPRMGAKSAENLRNAIKATQETTLARFIYALGIREVGEATANALANHFKNLDALIAAESE 545
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK-------------- 601
QL +P +G+ K + F ++ ++ ++++LR+ I W
Sbjct: 546 QLQEVPDVGAVVAKHIVAFFHEAHNQQVVAELREF-ISWPEGEEASSVQSDRLSGNTYVI 604
Query: 602 -------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV + +SK T LV G+ G KL KA L + ILDE
Sbjct: 605 TGTLSTMTRDEAKSALEALGAKVASSVSKKTTALVAGENAGSKLTKAQSLGLDILDENAL 664
Query: 643 VKIV 646
+++
Sbjct: 665 AELL 668
>gi|421856972|ref|ZP_16289329.1| DNA ligase [Acinetobacter radioresistens DSM 6976 = NBRC 102413]
gi|403187573|dbj|GAB75530.1| DNA ligase [Acinetobacter radioresistens DSM 6976 = NBRC 102413]
Length = 678
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 269/672 (40%), Positives = 402/672 (59%), Gaps = 43/672 (6%)
Query: 18 VTELKKELH---RHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGL 74
VT++++ + +HN AYY+ D P ISDN+YD L +LK +EE+YP+L+ D+ T+ VG
Sbjct: 8 VTQMRQLIQLIAQHNHAYYVMDQPSISDNEYDSLFHQLKALEEQYPDLVQNDTPTRRVG- 66
Query: 75 VGGENSKY--VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
G SK+ V H M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++
Sbjct: 67 -GQALSKFMTVRHAVPMLSLGNVFNKEDLFAFARRVEERLP-GQQVKYEVELKLDGLAIS 124
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIP--LVLNIKYPPELLEVRCEVLIYKKD 190
L YE G L + TRGDG GE+IT N+ I +P L + P+LLEVR EVLI K
Sbjct: 125 LWYENGELVRGVTRGDGETGEDITQNVKTIRNLPKYLYSDQAAIPKLLEVRGEVLIPKTG 184
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F+KLN G K F NPRNAAAG LRQL+P I + L F+A+G+ + + +S +
Sbjct: 185 FLKLNAENEAKGEKIFANPRNAAAGSLRQLDPGIAAARPLAFYAYGIAQCEPEHHLNSMT 244
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
E L+W + +G I + + ++ Y+KI +R +L EIDG+V K++ L QK+L
Sbjct: 245 ESLHWLRDLGFEIAERQFLCDSIEEVQRRYEKIMEERADLGVEIDGMVVKVDSLKQQKQL 304
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF SR PR+A AYKF + ALT ++ I+ Q+GRTGI+TPVA L PV + G+T++ TLHN
Sbjct: 305 GFLSREPRWATAYKFPAIAALTTVENIDWQVGRTGILTPVARLNPVFVGGVTVSNVTLHN 364
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI+R +++IGDTV V+R+G+VIPK+ RP+ +++ +P CP+C S ++ E
Sbjct: 365 IGEIHRLDVRIGDTVSVYRTGDVIPKVEKVWPEFRPDTAEVINLPETCPVCASPVVMPEG 424
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI-- 488
+ARCSG + C AQR ++HF SRKAM+I GLG + +E L++ ++ D+Y +
Sbjct: 425 EALARCSGE-LYCAAQRIESIRHFVSRKAMDIEGLGDRWVESLLHLELLKDVSDIYHLHQ 483
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
+ LL ++++ K N++ AI++SK TT +RFIYALGIR VGETTA+ LAN F+ LE
Sbjct: 484 HRNTLLGIEKMGEKSVQNLINAIEQSKKTTLARFIYALGIRGVGETTARMLANSFQTLEA 543
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP 598
+ +A + L +P +G T + F + +I +L GI+W LN
Sbjct: 544 LQQADVDSLKKVPDVGDITAEWIYDFFRAEHNLEVIDRLLAAGIHWDAPIASTRQPLNGE 603
Query: 599 N--------------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
+ G +V +S T +V G+K G KLEKA KLNI+ L+
Sbjct: 604 SWVLTGTLEHLTREQATQMLQALGARVSGSVSAKTKCVVAGEKAGSKLEKAQKLNIQTLN 663
Query: 639 EKNFVKIVKGFS 650
E+ F+++++ +
Sbjct: 664 ERQFIELMETYG 675
>gi|163751929|ref|ZP_02159142.1| DNA ligase, NAD-dependent [Shewanella benthica KT99]
gi|161328212|gb|EDP99377.1| DNA ligase, NAD-dependent [Shewanella benthica KT99]
Length = 690
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 267/687 (38%), Positives = 405/687 (58%), Gaps = 57/687 (8%)
Query: 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPEL----------- 62
+S + L E++ H+ Y++ D+PII+D++YD+L +LKK+E ++P L
Sbjct: 8 ISQEIEHLISEINEHDHRYHVLDDPIITDSEYDRLKIKLKKLENRFPALNLILDLNAVSE 67
Query: 63 -----LTKDSLTQHVGLVGGENSKY--VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT 115
+ DS ++ VG G SK+ + H M+SLDN F+DE+ F+ R+TN L T
Sbjct: 68 GVHTSIRFDSPSRRVG--GKALSKFDQITHLKPMLSLDNVFNDEEFEAFHARLTNRLGTT 125
Query: 116 KNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPP 175
+ + E K DG+AV++ Y G L++A+TRGDG IGE+IT N+ I IPL L P
Sbjct: 126 --LRFCCEPKLDGLAVSILYRDGVLERAATRGDGEIGEDITENVRTIRSIPLKLRGDNFP 183
Query: 176 ELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAH 235
LLEVR EV++ K+ F LN+ G K+F NPRNAAAG LRQL+ KI ++ L F+A+
Sbjct: 184 PLLEVRGEVIMPKQAFDSLNERARAKGEKEFVNPRNAAAGSLRQLDSKITASRSLGFYAY 243
Query: 236 GVG--ELRGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYE 293
+G E + H L + G + E V+++I +Y I +R L YE
Sbjct: 244 ALGVVEPETWGLADHHYGQLLQLKSWGFPVSAEVKQCDSVSEVIAYYTDIMTRRSALAYE 303
Query: 294 IDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALL 353
IDGVV K++ ++ Q KLGF ++APR+A A+KF ++E +T ++ ++ Q+GRTG +TPVA L
Sbjct: 304 IDGVVIKVDNIAQQLKLGFVAKAPRWATAFKFPAQEEMTLLEGVDFQVGRTGAVTPVARL 363
Query: 354 KPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFK 413
KP+ + G+T++ ATLHN EI R ++I DTV+V R+G+VIP+I + + RP+D+ +
Sbjct: 364 KPIFVGGVTVSNATLHNADEIARLGVKIKDTVIVRRAGDVIPQIVAIVAEKRPDDACEIE 423
Query: 414 IPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKL 473
P CP+C+S + IE ++ARC+G C AQRK ++HF+SRKA++I G+G K++E+L
Sbjct: 424 FPQTCPVCDSLVERIEGEVVARCTGGLF-CEAQRKEAIKHFASRKALDIDGMGDKVVEQL 482
Query: 474 VNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGE 533
++ +V + DL+K++ + LDR+ K A N++ AI+ +K TTF RF+YALGIR VGE
Sbjct: 483 IDKELVESPADLFKLSASAITMLDRMGLKSATNLVAAIEVAKKTTFPRFLYALGIREVGE 542
Query: 534 TTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIY 593
TA LANYFK+L+ + A E+ + + +G+ + F Q + ++ L + G+
Sbjct: 543 ATAANLANYFKSLDKLKAANAEEFIKVDDVGTIVAQHLTHFFAQSHNVEVVDSLIEAGVN 602
Query: 594 W--------------------------LNNPNTK------GGKVVNFISKNTNYLVKGQK 621
W LN + K G KV +SKNT+ LV G+
Sbjct: 603 WPVIEEVAEESLSLKGQTWVLTGTLTQLNRNDAKAQLQALGAKVAASVSKNTDCLVAGEA 662
Query: 622 PGKKLEKAIKLNIKILDEKNFVKIVKG 648
G KL KA L IKILDE + ++ G
Sbjct: 663 AGSKLTKAQDLGIKILDEDGLLAVLAG 689
>gi|119503165|ref|ZP_01625249.1| DNA ligase (NAD+) [marine gamma proteobacterium HTCC2080]
gi|119460811|gb|EAW41902.1| DNA ligase (NAD+) [marine gamma proteobacterium HTCC2080]
Length = 673
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 253/666 (37%), Positives = 388/666 (58%), Gaps = 38/666 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
V L+ L + YY D P +SD++YD+ L L+++E+K+P L++ DS TQ VG
Sbjct: 10 VMRLRDLLRSWGVEYYRNDAPTVSDSEYDRTLLALRELEQKFPHLVSADSPTQRVGAAPL 69
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
E + V H M+SLDN F+ +D++ F++R+ L + Y E K DGIAV++ ++
Sbjct: 70 EGFETVVHRLPMLSLDNAFNADDLLDFDRRVRERLD-GAQVRYACEPKLDGIAVSIVWQE 128
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L A+TRGDG GENIT N+ I +PL L+ + P LE R E+ + + F N
Sbjct: 129 GELTLAATRGDGRTGENITQNVRTIDSVPLRLSGENIPRYLEARGEIFMPRAGFEAFNAR 188
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPS-SHSELLNWY 256
G K F NPRNAAAG LRQL+ I + + L F A+G+G + GM+ SH+E +
Sbjct: 189 ARRDGGKPFVNPRNAAAGSLRQLDSSITRRRPLSFCAYGLGYVEGMSGALLSHTEAMAQL 248
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+ GL I + G++ +Y+ ++ R L ++IDG+V+K++ + Q++LGF SRA
Sbjct: 249 NQWGLPISEHSRSVPGIDGCERYYEDLSQVREGLGFDIDGIVFKVDTFAEQERLGFVSRA 308
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A KF ++E +T + + Q+GRTG +TPVA L PV + G+T++ ATLHN EI R
Sbjct: 309 PRWAIARKFPAQEEMTVVLGVEFQVGRTGAVTPVARLDPVFVGGVTVSNATLHNADEIAR 368
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
I++GDTV+V R+G+VIP++ ++ R ++ P+ CP C+S ++ + RC
Sbjct: 369 LGIKVGDTVIVRRAGDVIPQVAGVVVDRRLPQAEDVAFPDSCPACDSVLVREPGEAVWRC 428
Query: 437 -SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
+GS C AQR+A ++HF SR+AM+I G G+K+I++LV+ +++ TA DLY+++ L
Sbjct: 429 DAGS--ACPAQRRAAIEHFVSRRAMDIDGCGEKIIDQLVDLDLIKTASDLYELSQDTLAG 486
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L+R+ K A N+ AI+ SK TT SRFIYALGIR VGETTA++LA YF L +F AT+E
Sbjct: 487 LERMGTKSAKNLQAAIEDSKNTTLSRFIYALGIREVGETTARQLAEYFGALAPLFTATDE 546
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK-------------- 601
QL + +G +F P + +I+ L G+YW P +
Sbjct: 547 QLQEVEDVGPIVAGHLQRFFADPGRQEMINSLISHGVYW-PAPEVQIGDLPLSGQTWVVT 605
Query: 602 ------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
G KV + +S T+ +V G G KL+KA L + ++DE F+
Sbjct: 606 GKLEQMSRDQAEERLRVFGAKVSSSVSGKTSCVVAGPGAGSKLKKAHSLEVSVIDEAEFI 665
Query: 644 KIVKGF 649
++G+
Sbjct: 666 IQMEGW 671
>gi|425740353|ref|ZP_18858527.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-487]
gi|425495120|gb|EKU61310.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-487]
Length = 678
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 261/669 (39%), Positives = 394/669 (58%), Gaps = 38/669 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + + +HN AYY+ D P ISD++YD L +LK +EE+YPEL+ DS T VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPTTKVGGQA 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE
Sbjct: 69 LSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEVRCEVLIYKKDFIKL 194
G L + TRGDG GE+IT N+ I +P VL+ KY P LLEVR EVL+ K F KL
Sbjct: 128 NGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSGFEKL 187
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N + G K F NPRNAAAG LRQL+P I + L F+A+G+ + + ++ + L
Sbjct: 188 NADQEAKGEKTFANPRNAAAGSLRQLDPNIAAGRPLAFYAYGIAQCEPNHGLTTMHDSLQ 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
W ++G I + + + ++ + Y++I +R NL EIDG+V K++ L Q++LGF S
Sbjct: 248 WLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQQLGFLS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R PR+A AYKF ++ ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI
Sbjct: 308 REPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEI 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
+R ++++GDTV V+R+G+VIPK+ RP ++++ +P CP+C S ++ E +A
Sbjct: 368 HRLDVRVGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVMPEGEALA 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKN 492
RCSG + C AQR ++HF SRKAM+I GLG + +E L+ +++ D+Y + + +
Sbjct: 428 RCSGG-LYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHLHEHRET 486
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A
Sbjct: 487 LLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA 546
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
E L P +G T + F P + ++ +L GI+W + P
Sbjct: 547 NVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWV 605
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G +V +S T +V G+K G KLEKA KL I +++E +
Sbjct: 606 LTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETD 665
Query: 642 FVKIVKGFS 650
F+ ++ +
Sbjct: 666 FLSLMASYG 674
>gi|417555478|ref|ZP_12206547.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-81]
gi|421201484|ref|ZP_15658643.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC109]
gi|421456423|ref|ZP_15905765.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-123]
gi|421632722|ref|ZP_16073369.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-13]
gi|421803464|ref|ZP_16239382.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-A-694]
gi|395563516|gb|EJG25169.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC109]
gi|400210851|gb|EJO41815.1| DNA ligase (NAD+) [Acinetobacter baumannii IS-123]
gi|400391895|gb|EJP58942.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-81]
gi|408708430|gb|EKL53704.1| DNA ligase (NAD+) [Acinetobacter baumannii Naval-13]
gi|410413055|gb|EKP64899.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-A-694]
Length = 669
Score = 496 bits (1278), Expect = e-137, Method: Compositional matrix adjust.
Identities = 261/659 (39%), Positives = 388/659 (58%), Gaps = 38/659 (5%)
Query: 27 RHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHT 86
+HN AYY+ D P ISD++YD L +LK +EE+YPE + DS T VG + V H
Sbjct: 10 KHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEFVQADSPTTKVGGQALSKFESVTHV 69
Query: 87 FKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTR 146
M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE G L + TR
Sbjct: 70 VPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYENGVLVRGVTR 128
Query: 147 GDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEVRCEVLIYKKDFIKLNKYRYHLGLK 204
GDG GE+IT N+ I +P VL+ KY P LLEVR EVL+ K F KLN + G K
Sbjct: 129 GDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSGFEKLNADQEAKGEK 188
Query: 205 KFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSIC 264
F NPRNAAAG LRQL+P I + L F+A+G+ + + ++ + L W ++G I
Sbjct: 189 TFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMHDSLQWLTELGFQIA 248
Query: 265 GEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYK 324
+ + + ++ + Y++I +R NL EIDG+V K++ L Q++LGF SR PR+A AYK
Sbjct: 249 ERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQQLGFLSREPRWATAYK 308
Query: 325 FLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDT 384
F ++ ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI+R +++IGDT
Sbjct: 309 FPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEIHRLDVRIGDT 368
Query: 385 VVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECI 444
V V+R+G+VIPK+ RP ++++ +P CP+C S ++ E +ARCSG + C
Sbjct: 369 VSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVMPEGEALARCSGG-LYCA 427
Query: 445 AQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKNLLRLDRVSNK 502
AQR ++HF SRKAM+I GLG + +E L+ +++ D+Y + + + LL ++++ K
Sbjct: 428 AQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHLHEHRETLLGIEKMGEK 487
Query: 503 LANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPK 562
N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A E L P
Sbjct: 488 SVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAANVEALKKTPD 547
Query: 563 IGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------------- 601
+G T + F P + ++ +L GI+W + P
Sbjct: 548 VGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWVLTGTLEQMTR 606
Query: 602 ----------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGFS 650
G +V +S T +V G+K G KLEKA KL I +++E +F+ ++ G+
Sbjct: 607 DQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYG 665
>gi|322418721|ref|YP_004197944.1| NAD-dependent DNA ligase [Geobacter sp. M18]
gi|320125108|gb|ADW12668.1| DNA ligase, NAD-dependent [Geobacter sp. M18]
Length = 668
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 259/665 (38%), Positives = 391/665 (58%), Gaps = 39/665 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ L KE+ RHN YY D P I+D +YD L EL+++E+K+PEL DS T VG G
Sbjct: 9 RIAWLSKEIERHNRLYYEQDMPEITDAEYDALFRELQELEKKFPELALPDSPTGRVG--G 66
Query: 77 GENSKY--VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN--IEYIAELKFDGIAVN 132
+K+ V H+ M+SL+N FS++D++ F+ R+ L L + I YI E K DG+AV
Sbjct: 67 RPLAKFTQVRHSTPMLSLENAFSEQDMVDFDDRVKRFLGLAADAQISYICEPKMDGVAVE 126
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
L Y G L STRGDG +GE +T N+ I +PL L + PPEL+ VR EV + F
Sbjct: 127 LVYRDGLLAIGSTRGDGVVGEEVTQNLKTIKDVPLRLETREPPELVTVRGEVYLPLAPFR 186
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
K N+ R G F NPRNAAAG LRQL+ +I + L F + GEL G+ +S S
Sbjct: 187 KFNREREEAGEPPFANPRNAAAGSLRQLDSRITAKRPLSIFCYAPGELAGVEF-TSQSHF 245
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
L K L + V++G+ ++ +Y+++ KR +LPYEIDGVV K++ Q++LG
Sbjct: 246 LETIPKWRLPVNPLTRVVTGIQAMLAYYQEMMEKRDDLPYEIDGVVVKVDSFRMQRELGE 305
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
SR+PR+A A+KF ++A T ++ I +GRTG+ITPVA LKPV + G+ ++RATLHN
Sbjct: 306 KSRSPRWATAWKFPPRQATTVVEKIFHSVGRTGVITPVAFLKPVSVSGVMVSRATLHNWE 365
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
E+ RK+I+ GDTVVV R+G+VIP + ++L RP + +IP CP+C +++ + +
Sbjct: 366 ELERKDIREGDTVVVERAGDVIPAVVQALLDKRPEGAVKPEIPTSCPVCGGEVVRLPDEV 425
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
RC G + C AQ ++HF+SR+AM+I GLG K IE+L++ ++ D+Y + +
Sbjct: 426 AVRCVG--LACPAQLLERVKHFASRRAMDIEGLGDKFIEQLLSLKLISDVADIYALKEAD 483
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
++ +R+ KLA N+L AI+ SK SR I+ALG+RHVGE TAK LA F ++E + KA
Sbjct: 484 FMQFERMGKKLAENLLNAIEASKERDLSRLIFALGMRHVGEHTAKLLAGAFGSIENLAKA 543
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGGK-------- 604
+EE+L +I ++G + + F + +I +L++ G+ GG+
Sbjct: 544 SEEELTSIREVGPQVAASIVDFFKNEENLRVIERLKEAGVSPKVEEKRLGGRFTGKTFVF 603
Query: 605 ----------------------VVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
+SK T+Y+V G G KLEKA +L +++L E+ F
Sbjct: 604 TGALEKFTRDGAKKMVEQEGAHAAGSVSKKTDYVVAGADAGSKLEKARQLGVRVLTEEEF 663
Query: 643 VKIVK 647
+++++
Sbjct: 664 LELMQ 668
>gi|336312042|ref|ZP_08566997.1| DNA ligase [Shewanella sp. HN-41]
gi|335864298|gb|EGM69390.1| DNA ligase [Shewanella sp. HN-41]
Length = 682
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 260/659 (39%), Positives = 390/659 (59%), Gaps = 38/659 (5%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L + L+ HNI YY+ D P I+D++YD+L+ L K+E ++PE + DS TQ VG +
Sbjct: 26 LSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKLEAQFPEYIAADSPTQRVGGMALAKF 85
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ H M+SLDN F + D F++R+T+++ + + E K DG+AV++ Y G L
Sbjct: 86 DQITHLKPMLSLDNAFDEADFSAFHRRVTDKVG---EVSFCCEPKLDGLAVSILYRDGVL 142
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
++A+TRGDG GE+IT N+ I IPL L PEL+EVR E + K F LN
Sbjct: 143 ERAATRGDGTTGEDITENVKTIRSIPLKLRGHDFPELVEVRGEAFMPKAAFEALNDRARA 202
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP--SSHSELLNWYQK 258
K F NPRNAAAG LRQL+ KI ++ L F+A+ +G + P +H E L +
Sbjct: 203 KDEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVVEPDTYPLAKTHFEQLQQLKS 262
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL + E V + ++++ ++YK I +R LP+EIDGVV K+N ++ Q+ LGF +++PR
Sbjct: 263 WGLPVSNEIEVCAELDQVFDYYKDILTRRSGLPFEIDGVVMKVNDIAQQQSLGFVAKSPR 322
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E +T ++ ++ Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R
Sbjct: 323 WAIAYKFPAQEEMTLLEDVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIERLG 382
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
I+IGDTV++ R+G+VIP+I S +L R K CP+C S + +E +ARCSG
Sbjct: 383 IKIGDTVIIRRAGDVIPQIVSVVLEKRTGAEKEIVFKPECPVCGSLVERLEGEAVARCSG 442
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+K+ + LDR
Sbjct: 443 GLF-CEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKELVQSPADLFKLTASMMTMLDR 501
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N+ AI+ +K TT +RF+YALGIR VGE TA LA +F +L+ + AT EQL
Sbjct: 502 MGMKSAANLAAAIEAAKTTTLARFLYALGIREVGEATAANLAAHFTSLDALRDATVEQLT 561
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------ 594
+ +G+ + F QP + +I L G++W
Sbjct: 562 EVEDVGAVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAIEAPSADAQPLKGQTWVLTGTL 621
Query: 595 --LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
LN + K G KV +SKNT+ LV G+ G KL KA +L +K++DE + +
Sbjct: 622 NQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIDEAELLAL 680
>gi|383788286|ref|YP_005472854.1| DNA ligase [Caldisericum exile AZM16c01]
gi|381363922|dbj|BAL80751.1| DNA ligase [Caldisericum exile AZM16c01]
Length = 678
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 273/676 (40%), Positives = 401/676 (59%), Gaps = 41/676 (6%)
Query: 8 KINFSKLSF-----RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPEL 62
KI+ S L+ R+ EL+ ++ HN YY+ D+P I+D +YD+L EL IEE++P+L
Sbjct: 2 KIDVSHLTREQAEKRLKELRDIINYHNYRYYVLDSPEITDAEYDRLFQELLAIEERFPDL 61
Query: 63 LTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIA 122
+T DS +Q VG + V H+ M+SL N F+DED++ F++R+ E L+K IEY
Sbjct: 62 ITPDSPSQKVGAPPLDEFPEVIHSVPMLSLGNAFNDEDLMEFDRRVKRESGLSK-IEYET 120
Query: 123 ELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRC 182
ELK DG+A+++RYE G L + +TRGDG GE++T N+ + +PL L I PP ++EVR
Sbjct: 121 ELKMDGLAISIRYENGILVRGATRGDGVRGEDVTPNVKTVRGVPLRLLIDNPPPVIEVRG 180
Query: 183 EVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG 242
EV++YK+DF KLN R G F NPRNAAAG +RQL+ +I + LH A+GVGE+ G
Sbjct: 181 EVIMYKEDFEKLNNERIQKGEPPFANPRNAAAGSIRQLDSRITAERKLHMIAYGVGEVVG 240
Query: 243 MNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKIN 302
+ + ELL + KIG I E V + +I K++ R + P+ DG+V K+N
Sbjct: 241 VEF-KTQFELLQYLNKIGFRISPEVKVHRDIESVIVEVKRLTAIRDSFPFGADGIVVKVN 299
Query: 303 CLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGIT 362
+ QK+LG TS PR+A+AYKF ++EA T +K I +GRTG +TPVA+ +PV IDG
Sbjct: 300 DIELQKRLGATSHEPRWAIAYKFPAEEAETIVKDIIFSVGRTGAVTPVAIFEPVEIDGSI 359
Query: 363 ITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICN 422
++RA+LHNE +I++GD V+VH++G+VIP++ + R D FK+P+ CP+C
Sbjct: 360 VSRASLHNEDIAKALDIRVGDHVIVHKAGSVIPEVVRVVKEKRKGDEITFKMPDRCPVCG 419
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
+I E + RC + C AQ K + HF SR AM+I +G+K+++++V+ +V
Sbjct: 420 GPLIREEGFAVTRCPN--VRCPAQVKERIIHFVSRDAMDIESIGEKLVDQMVDRGLVTDY 477
Query: 483 VDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY 542
DLY I + LL L+R+ LA IL I++SK + IYALGI +VG+ TA+ LA +
Sbjct: 478 GDLYYIPKEKLLTLERMGPVLAEKILRNIEESKSRPLANLIYALGIFNVGKRTAELLAEH 537
Query: 543 FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK- 601
FK+LE + A E +L I IG T K+ ++F +R++I +L G+ P K
Sbjct: 538 FKSLENLMNAKIEDILQIEGIGPVTAKSIVEFFESSGNRMVIDKLIKAGVNTKEVPKEKE 597
Query: 602 -------------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAI 630
GG V + ISK +YLV G+ PG KLEKA
Sbjct: 598 NVGPLKGLTFVFTGALKEFTRSEAGKIVESLGGSVSDTISKKVDYLVVGEDPGSKLEKAQ 657
Query: 631 KLNIKILDEKNFVKIV 646
KL IKI++E F K++
Sbjct: 658 KLGIKIINEDEFKKMI 673
>gi|424060947|ref|ZP_17798438.1| DNA ligase [Acinetobacter baumannii Ab33333]
gi|404668899|gb|EKB36808.1| DNA ligase [Acinetobacter baumannii Ab33333]
Length = 678
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 261/669 (39%), Positives = 394/669 (58%), Gaps = 38/669 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + + +HN AYY+ D P ISD++YD L +LK +EE+YPE + DS T VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEFVQADSPTTKVGGQA 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE
Sbjct: 69 LSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEVRCEVLIYKKDFIKL 194
G L + TRGDG GE+IT N+ I +P VL+ KY P LLEVR EVL+ K F KL
Sbjct: 128 NGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSGFEKL 187
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N + G K F NPRNAAAG LRQL+P I + L F+A+G+ + + ++ + L
Sbjct: 188 NADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMHDSLQ 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
W ++G I + + + ++ + Y++I +R NL EIDG+V K++ L Q++LGF S
Sbjct: 248 WLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQQLGFLS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R PR+A AYKF ++ ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI
Sbjct: 308 REPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEI 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
+R +++IGDTV V+R+G+VIPK+ RP ++++ +P CP+C S ++ E +A
Sbjct: 368 HRLDVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVMPEGEALA 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKN 492
RCSG + C AQR ++HF SRKAM+I GLG + +E L+ +++ D+Y + + +
Sbjct: 428 RCSGG-LYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHLHEHRET 486
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A
Sbjct: 487 LLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA 546
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
+ L P +G T + F P + ++ +L GI+W + P
Sbjct: 547 NVDALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWV 605
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G +V +S T +V G+K G KLEKA KL I +++E +
Sbjct: 606 LTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETD 665
Query: 642 FVKIVKGFS 650
F+ ++ G+
Sbjct: 666 FLSLMAGYG 674
>gi|262369277|ref|ZP_06062605.1| DNA ligase [Acinetobacter johnsonii SH046]
gi|262315345|gb|EEY96384.1| DNA ligase [Acinetobacter johnsonii SH046]
Length = 679
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 266/675 (39%), Positives = 399/675 (59%), Gaps = 40/675 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S + ++ +L + L +HN AYY+ D P I+D++YDQL +LK +EE+YPE + DS
Sbjct: 5 STVVAQMRQLIQILAQHNHAYYVMDQPTIADSEYDQLFHQLKALEEQYPEYIQPDSPINK 64
Query: 72 VGLVGGENSKY--VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGI 129
VG G +K+ V H M+SL N F+ E++ F +R L + I+Y ELKFDG+
Sbjct: 65 VG--GKPLAKFTSVTHVVPMLSLGNVFNQEELFAFARRAEERLP-NQTIQYDVELKFDGL 121
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYP--PELLEVRCEVLIY 187
A++L YE G L + TRGDG GE+IT N+ I +P VL+ P LLEVR EVL+
Sbjct: 122 AISLWYEQGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSTDQGEVPTLLEVRGEVLMP 181
Query: 188 KKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPS 247
K F KLN G K F NPRNAAAG LRQL+P I ++ L F+A+G+ + + S
Sbjct: 182 KAGFEKLNAENEAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCEPNHGQS 241
Query: 248 SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQ 307
+ SE L W Q+ G ++ + V + ++ Y++IN +R L EIDG+V K+N L Q
Sbjct: 242 TMSESLEWLQQFGFAVGERHFVCDSIQEVQAVYEQINAERPQLSVEIDGMVIKVNSLKQQ 301
Query: 308 KKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRAT 367
++LGF SR PR+A AYKF + ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ T
Sbjct: 302 QQLGFLSREPRWATAYKFPAVAALTTVENIDWQVGRTGTLTPVARLNPVAVGGVTVSNVT 361
Query: 368 LHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIY 427
LHN EI+R +++IGDTV V+RSG+VIPK+ RP D+ ++P+ CP+C S ++
Sbjct: 362 LHNIGEIHRLDVRIGDTVSVYRSGDVIPKVEKVWPEFRPVDATEVELPSQCPVCESPVVM 421
Query: 428 IESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYK 487
E +ARCSG + C AQR ++HF SRKA++I GLG + +E L++ +++ D+Y
Sbjct: 422 PEGEALARCSGG-LYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYH 480
Query: 488 I--NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN 545
+ + + LL ++++ K N++ +I+ SK TT + FIYALGIR VGETTA+ LAN F+
Sbjct: 481 LHEHREKLLTIEKMGEKSVQNLIDSIENSKKTTLAAFIYALGIRGVGETTARMLANTFQT 540
Query: 546 LECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------L 595
L+ + A + L P +G T + + F P + ++ +L GI+W L
Sbjct: 541 LDALRVADIDALKKTPDVGDITAEWIVDFFQAPHNLEVLDRLLAAGIHWDAPVAPSRQPL 600
Query: 596 NNPN--------------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIK 635
N + G +V +S T +V G+K G KL+KA KL I
Sbjct: 601 NGESWVVTGTLSTMGRDEATQLLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAEKLGIA 660
Query: 636 ILDEKNFVKIVKGFS 650
+++E F++++K +
Sbjct: 661 VINEAEFIQLMKDYG 675
>gi|421696425|ref|ZP_16136011.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-692]
gi|404561605|gb|EKA66831.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-692]
Length = 669
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 260/659 (39%), Positives = 388/659 (58%), Gaps = 38/659 (5%)
Query: 27 RHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHT 86
+HN AYY+ D P ISD++YD L +LK +EE+YPE + DS T VG + V H
Sbjct: 10 KHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEFVQADSPTTKVGGQALSKFESVTHV 69
Query: 87 FKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTR 146
M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE G L + TR
Sbjct: 70 VPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYENGVLVRGVTR 128
Query: 147 GDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEVRCEVLIYKKDFIKLNKYRYHLGLK 204
GDG GE+IT N+ I +P VL+ KY P LLEVR EVL+ K F KLN + G K
Sbjct: 129 GDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSGFEKLNADQEAKGEK 188
Query: 205 KFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSIC 264
F NPRNAAAG LRQL+P I + L F+A+G+ + + ++ + L W ++G I
Sbjct: 189 TFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMHDSLQWLTELGFQIA 248
Query: 265 GEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYK 324
+ + + ++ + Y++I +R NL EIDG+V K++ L Q++LGF SR PR+A AYK
Sbjct: 249 ERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQQLGFLSREPRWATAYK 308
Query: 325 FLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDT 384
F ++ ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI+R ++++GDT
Sbjct: 309 FPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEIHRLDVRVGDT 368
Query: 385 VVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECI 444
V V+R+G+VIPK+ RP ++++ +P CP+C S ++ E +ARCSG + C
Sbjct: 369 VSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVMPEGEALARCSGG-LYCA 427
Query: 445 AQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKNLLRLDRVSNK 502
AQR ++HF SRKAM+I GLG + +E L+ +++ D+Y + + + LL ++++ K
Sbjct: 428 AQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHLHEHRETLLGIEKMGEK 487
Query: 503 LANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPK 562
N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A E L P
Sbjct: 488 SVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAANVEALKKTPD 547
Query: 563 IGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------------- 601
+G T + F P + ++ +L GI+W + P
Sbjct: 548 VGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWVLTGTLEQMTR 606
Query: 602 ----------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGFS 650
G +V +S T +V G+K G KLEKA KL I +++E +F+ ++ G+
Sbjct: 607 DQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMAGYG 665
>gi|406040217|ref|ZP_11047572.1| DNA ligase [Acinetobacter ursingii DSM 16037 = CIP 107286]
Length = 676
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 262/673 (38%), Positives = 401/673 (59%), Gaps = 38/673 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S + ++ +L + + +HN AYY+ D P ISDN+YDQL +LK +E++YPELL D+ T
Sbjct: 5 SDVIAQMRQLIQLIAKHNHAYYVMDQPSISDNEYDQLFHQLKALEQQYPELLQPDTPTNK 64
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + V H M+SL N F+ E++ F +RI L + ++Y ELK DG+A+
Sbjct: 65 VGGQALSKFETVTHAVPMLSLGNVFNQEELFAFARRIEERLP-NQQVQYDVELKLDGLAI 123
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVL--NIKYPPELLEVRCEVLIYKK 189
+L YE G L + TRGDG GE+I+ N+ I +P L N P LLEVR EVL+ K+
Sbjct: 124 SLWYENGVLIRGVTRGDGETGEDISQNVKTIRNLPKFLSHNPVEIPRLLEVRGEVLMPKQ 183
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F +LN G K F NPRNAAAG LRQL+P I ++ L F+A+G+ + + +S
Sbjct: 184 GFERLNAANEAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCEPHHGLASM 243
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
E L+W ++G I + S + ++ + Y++I +R NL EIDG+V K++ L Q++
Sbjct: 244 HESLHWLTQLGFEIAERQFLCSSIEEVQQRYEQIQQERPNLTVEIDGMVIKVDDLKQQQQ 303
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF SR PR+A AYKF ++ A T ++ I+ Q+GRTG +TPVA L+PVL+ G+T++ TLH
Sbjct: 304 LGFLSREPRWATAYKFPAEIARTTVENIDWQVGRTGTLTPVARLQPVLVGGVTVSNVTLH 363
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI+R ++++GD V V+RSG+VIPK+ RP+D++I ++P CP+C+S ++ E
Sbjct: 364 NIGEIHRLDVRVGDQVSVYRSGDVIPKVERVWPEFRPSDAQIVQLPENCPVCSSPVVMPE 423
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI- 488
+ARCSG + C AQR ++HF SRKAM+I GLG + +E L++ N++ D+Y +
Sbjct: 424 GEALARCSGG-LYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLHLNLLKDVADIYHLH 482
Query: 489 -NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLE 547
+ + LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ +
Sbjct: 483 EHRETLLSIEKMGEKSVQNLMDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTFD 542
Query: 548 CMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK------ 601
+ A E L P +G T + F P + ++ +L GI+W + P
Sbjct: 543 ALKNADIEALKKTPDVGEITAEWIFDFFLAPHNIEVLDRLLAAGIHW-DAPTAPTRQPLN 601
Query: 602 -------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
G +V +S T +V G+K G KL+KA KL+I++
Sbjct: 602 GESWVVTGTLSSMGRDEATQRLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAEKLDIRV 661
Query: 637 LDEKNFVKIVKGF 649
++E+ F++ + +
Sbjct: 662 MNEQEFLEFLAQY 674
>gi|303258051|ref|ZP_07344059.1| DNA ligase, NAD-dependent [Burkholderiales bacterium 1_1_47]
gi|331000674|ref|ZP_08324326.1| DNA ligase [Parasutterella excrementihominis YIT 11859]
gi|302859070|gb|EFL82153.1| DNA ligase, NAD-dependent [Burkholderiales bacterium 1_1_47]
gi|329570827|gb|EGG52542.1| DNA ligase [Parasutterella excrementihominis YIT 11859]
Length = 684
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 266/683 (38%), Positives = 400/683 (58%), Gaps = 44/683 (6%)
Query: 1 MSFHAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYP 60
M KKK+ KL R+ +L +EL +HN AYY+ + P +SD YD L EL ++E++YP
Sbjct: 1 MEEQDKKKLEAVKL--RMEKLAEELEKHNKAYYIDNAPTVSDEIYDSLFQELARLEKEYP 58
Query: 61 ELLTKDSLTQHVGLVGGENSKYVHHTFKMMSL--DNGFSDEDVIIFNKRITNELKLT--K 116
+ + S T+ VG K V H M+S+ + ++ + F+ R+ EL+LT +
Sbjct: 59 QFKSPVSPTERVGATVQSELKKVTHAVPMLSIHTETDYTAQGAYDFDARVRRELELTPDQ 118
Query: 117 NIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPE 176
I+Y ELKFDG+A+NLRYE G L QA+TRGDG GE++T N+ I +PL + P+
Sbjct: 119 TIDYDCELKFDGLAINLRYEDGVLVQAATRGDGYTGEDVTANVKTIKTLPL--KVDGFPK 176
Query: 177 LLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHG 236
+ EVR EV+++K+ F KLN+ + +G K F NPRNAAAG LRQL+ + + L+F+A+G
Sbjct: 177 IFEVRGEVIMHKEVFRKLNEEQEAVGAKLFANPRNAAAGSLRQLDSALTAKRNLNFYAYG 236
Query: 237 VGELRGMNMPS-SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEID 295
GE+ MP+ + S LL++ + G + V+ +L F+ ++ R +LP++ID
Sbjct: 237 YGEVS--EMPADTQSGLLDYLKSKGFPVISNRIVVQTPEQLEAFHLEVARIRHDLPFDID 294
Query: 296 GVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKP 355
GVVYK+N + QK+LGF SR PR+A+A+K+ +E T++ I +Q+GRTG +TPVA LKP
Sbjct: 295 GVVYKVNSFARQKQLGFVSREPRWAVAHKYPPEEVQTQVLDITVQVGRTGKLTPVARLKP 354
Query: 356 VLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIP 415
V + G TI+ +LHNE + I+IGDTVVVHR+G+VIP+I I LRP D++ F +P
Sbjct: 355 VFVGGTTISNVSLHNEEFLQNMGIKIGDTVVVHRAGDVIPEIVRVIPELRPKDARDFVMP 414
Query: 416 NICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVN 475
CP+C S + CSG C AQR + HF SRKAM I G+G+K+ E+L+
Sbjct: 415 EFCPVCGSHAYKEDGEKDRHCSGGLF-CRAQRAQSILHFVSRKAMGIDGIGEKLAEQLIE 473
Query: 476 ANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETT 535
++V T D+Y++ L+ LDR+ K A ++ +I+ SK TT RF+YA+ I VGE T
Sbjct: 474 HDLVTTVADIYRLTVDKLVGLDRMGQKSAEKLVASIEASKKTTLERFLYAISIPEVGEAT 533
Query: 536 AKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL 595
A+ LA++F L+ + +A+ EQL + IG + + + F +P + +I+ L D G+ W
Sbjct: 534 ARNLASHFGALKPLEEASLEQLQEVEDIGPSGAENILHFFAEPANIAVINDLMDRGVVWE 593
Query: 596 NNPNTK--------------------------------GGKVVNFISKNTNYLVKGQKPG 623
T GGKV +SK T+Y++ G+ G
Sbjct: 594 EGTGTSGQELPLNGLTFVLTGTLPTLSRDEASDIIRKAGGKVSGSVSKKTSYVLAGESAG 653
Query: 624 KKLEKAIKLNIKILDEKNFVKIV 646
KL KA L + I+DE K++
Sbjct: 654 SKLAKAEALGVNIIDEPELFKMI 676
>gi|34499358|ref|NP_903573.1| DNA ligase [Chromobacterium violaceum ATCC 12472]
gi|81654398|sp|Q7NR81.1|DNLJ_CHRVO RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|34105208|gb|AAQ61564.1| DNA ligase [Chromobacterium violaceum ATCC 12472]
Length = 821
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 246/617 (39%), Positives = 363/617 (58%), Gaps = 46/617 (7%)
Query: 5 AKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLT 64
A ++ + R EL++ L+R+ YY+ D P + D +YD+L EL+ +EE +PEL
Sbjct: 13 AVREFPMTANELRAAELRELLNRYGHEYYVLDAPTVPDAEYDRLFRELQALEEAHPELAV 72
Query: 65 KDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSD----------EDVIIFNKRITNELKL 114
DS T+ VG + V H M+SL N FSD ++I F++R+ L
Sbjct: 73 SDSPTRRVGGAPLDEFVSVVHAVPMLSLSNAFSDMQLTDPAERHSELIQFDERVRKGLDA 132
Query: 115 TKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYP 174
+ +EY E KFDG+A++L YE G L +A+TRGDG GE +T N+ I IPL L+ P
Sbjct: 133 AE-VEYATEPKFDGLAISLLYENGVLTRAATRGDGVAGEQVTENVRTIRAIPLKLDGANP 191
Query: 175 PELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFA 234
P LLEVR EVL+ K+DF +LN + G K F NPRNAAAG LRQL+ +I + L FFA
Sbjct: 192 PALLEVRGEVLMLKRDFERLNADQIARGDKTFANPRNAAAGSLRQLDSRITAQRRLSFFA 251
Query: 235 HGVGELRGMNMPSSHSELLNWYQKIGLSICGEY--SVLSGVNKLIEFYKKINIKRFNLPY 292
+ + ++ G + P++H+ + W + +G + + V+SG L +Y+ + R LP+
Sbjct: 252 YSIAQVGGADWPATHAGEMAWLKTLGFPVVMDSLRPVVSGAAGLAGYYEAVLTARAGLPF 311
Query: 293 EIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVAL 352
EIDGVVYK+N Q+ LGF SRAPR+A+A+KF ++EALT ++AI Q+GRTG ITPVA
Sbjct: 312 EIDGVVYKVNRRDQQEALGFVSRAPRWAIAHKFPAEEALTCVEAIEEQVGRTGAITPVAR 371
Query: 353 LKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSK-- 410
LKPV + G+T+T ATLHNE E+ RK++++GDTVVV R+G+VIP++ S +L+ RP
Sbjct: 372 LKPVFVGGVTVTNATLHNEDEVRRKDVRVGDTVVVRRAGDVIPEVVSVVLAQRPMQPAEG 431
Query: 411 -------------IFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSR 457
+++P CP+C S ++ E IARCSG + C AQR +QHF+ R
Sbjct: 432 GDLFSAGEEPRYPAYRLPTACPVCGSHVVREEGEAIARCSGG-LSCRAQRSQAIQHFAGR 490
Query: 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR-----------------VS 500
+ M+I GLG++ I+KLV V DLY++ ++LL + R V+
Sbjct: 491 RMMDIDGLGERYIDKLVEYGYVQGVADLYRLKLEDLLEMKRRADEDEGVTPETVKAGKVA 550
Query: 501 NKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNI 560
+K A N++ AI S+ +R ++ALGIRHVGE+TAK LA++ + + + +
Sbjct: 551 SKWAENLIEAIDASRAPPLARLLFALGIRHVGESTAKTLADWLGTMALIRRCPAALFAAL 610
Query: 561 PKIGSTTVKAFIKFINQ 577
P IG + F +
Sbjct: 611 PDIGGVVADSLADFFAE 627
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 599 NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 648
GGKV +SK T+Y+V G++ G KL KA +L + ILDE ++ G
Sbjct: 771 EAAGGKVSGSVSKKTHYVVAGEEAGGKLAKAQELGVAILDEAGLQALLAG 820
>gi|319943831|ref|ZP_08018112.1| DNA ligase [Lautropia mirabilis ATCC 51599]
gi|319743064|gb|EFV95470.1| DNA ligase [Lautropia mirabilis ATCC 51599]
Length = 779
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 246/605 (40%), Positives = 366/605 (60%), Gaps = 26/605 (4%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+ + RV L+ EL HN AYY D P + D+ YD L EL+++E ++P LLT DS TQ
Sbjct: 21 ADIRARVQTLRAELLAHNRAYYEEDAPTVEDSVYDGLFLELQQLEARWPALLTPDSPTQR 80
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG V H M SL N FS+ DV+ F++R+ + L +T++ + A K DG+A
Sbjct: 81 VGSAPSAGFGTVTHRVPMRSLSNAFSEADVLAFDRRLKSLLGVTEDFAFSATPKLDGLAA 140
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
LRYE+G L Q +TRGDG GENIT N+ + +P L+ P E+LEVR EVL+ K+DF
Sbjct: 141 TLRYEHGRLVQGATRGDGVTGENITANLRTVRGVPAQLSGPAP-EVLEVRGEVLMLKEDF 199
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHS 250
+ LN+ + G K F NPRNAAAG LRQL+ ++ ++ L F+A+G+GE+ + +P+S
Sbjct: 200 LALNRAQEARGDKLFANPRNAAAGSLRQLDARVTASRPLTFYAYGIGEVSDPDQVPASQH 259
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+L W +G + GV+ L+++Y+ R LPY IDGVVY+++ Q++
Sbjct: 260 GMLVWLGTLGFLPPPGAERVQGVSALLDYYRHTGSVRATLPYAIDGVVYQLDDRHLQEQA 319
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPRFALA+K+ ++EA+T ++ I +Q+GRTG++TPVA L+PV + G+ ++ ATLHN
Sbjct: 320 GFVARAPRFALAHKYAAEEAVTTLQDIFVQVGRTGVLTPVARLEPVFVGGVNVSNATLHN 379
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
E E+ RK++ IGD V+V R+G+VIP++ +L RP D++ F++P+ CP+C S + + S
Sbjct: 380 EDEVRRKHLLIGDRVIVRRAGDVIPEVVGVVLDQRPADAREFRMPSQCPVCGSAVQRLPS 439
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
RC G C AQRK L HF+ R+AM+I GLG ++E+LV+ N+V DLY+++
Sbjct: 440 EANWRCVGGLF-CSAQRKRALWHFAHRRAMDIDGLGDVLVEQLVDGNLVHEPADLYRLDA 498
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L R+ K A N+L AI S+ + RF++ALGIR VGE A+ LA F +LE
Sbjct: 499 ATLQALPRMGEKSAANLLAAIDGSRHPSLERFLFALGIRAVGEEAARVLARAFGDLEGFL 558
Query: 551 KAT---------------------EEQLLNIP--KIGSTTVKAFIKFINQPLHRLLISQL 587
A E+ L +P IG + + F+ + +R I+ L
Sbjct: 559 AADWATLLEEKAATLKENERRRSRGERPLPVPLDGIGPEIIGSVSAFLGEAHNRDSIAHL 618
Query: 588 RDVGI 592
R VG+
Sbjct: 619 RAVGV 623
>gi|334339880|ref|YP_004544860.1| NAD-dependent DNA ligase [Desulfotomaculum ruminis DSM 2154]
gi|334091234|gb|AEG59574.1| DNA ligase, NAD-dependent [Desulfotomaculum ruminis DSM 2154]
Length = 672
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 244/668 (36%), Positives = 407/668 (60%), Gaps = 39/668 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL++E+++HN YY+ D P I+D++YD+L+ EL ++E + PE +T DS +Q VG
Sbjct: 11 RLEELRREINQHNYQYYVLDQPTITDDQYDRLMQELLRLEAENPEWVTSDSPSQRVGGQV 70
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F ++D+ F++R+ + L + +EY+ ELK DG+A++L YE
Sbjct: 71 QKGFASVPHRIPMLSLGNAFGEQDLKEFDRRVRSGLD-GEEVEYVVELKIDGLAISLWYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G + +TRGDG GE+IT N+ + IPL L P LEVR E + K F+KLN+
Sbjct: 130 KGIFIRGTTRGDGEFGEDITANLRTVKAIPLRLKEDIP--FLEVRGEAFMPKDSFVKLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G F NPRNAAAG LRQL+ +I ++ L F + +G L G + P SH+ L W
Sbjct: 188 MREEAGEALFANPRNAAAGSLRQLDTRITASRNLSAFMYAIGYLEGPD-PGSHARGLAWL 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+++G + ++ V + +++E+ ++ KRF+LPY IDG+V K+N L Q++LG T ++
Sbjct: 247 RELGFRVNSQHKVCEDMEEVLEYCRRWQEKRFDLPYAIDGLVIKVNSLQQQQRLGATLKS 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF +++A++ I+ I +++GRTG++TP A+L+PV + G T+++ATLHNE + +
Sbjct: 307 PRWAIAYKFPAEQAVSTIRDITVRVGRTGVLTPSAILEPVQLAGTTVSKATLHNEDIVRQ 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD ++ ++G++IP++ R + K F +P CP C++ ++ +E RC
Sbjct: 367 KDIRIGDKALIQKAGDIIPEVVRVYPEERTGEEKPFVMPTTCPECHAPVVRMEGEAACRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
S C A + G+ HF SR AM+I+GLG+ ++ +L+ +V DLY++ +++L+ L
Sbjct: 427 SNR--NCPAISREGVIHFVSRGAMDILGLGESIVTQLIREGLVRDPADLYRLQYEDLICL 484
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ + + N+L A++ SK T ++ ++ LGIRHVG+ AK LA F +++ + +AT E+
Sbjct: 485 ERMGARSSQNLLEAVEASKKNTLAQLLFGLGIRHVGDRAAKILARRFGSMKALMEATLEE 544
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL-------------RDVGIYWLNNP----- 598
L IP+IG + + + ++ + LI +L RD G L+
Sbjct: 545 LTEIPEIGVKIAGSIVDYFSKAENLDLIQRLAAAGVNMEGEKEHRDAGELPLSGKTFVVT 604
Query: 599 ---------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
+GGKV +SK T+Y+V G+ PG K EKA++L + +L+E +FV
Sbjct: 605 GTLEGFSRQEAQKAIEERGGKVSGSVSKKTDYVVVGENPGSKQEKALQLGVVLLNEADFV 664
Query: 644 KIVKGFST 651
++ FS+
Sbjct: 665 ALLNRFSS 672
>gi|300691610|ref|YP_003752605.1| DNA ligase [Ralstonia solanacearum PSI07]
gi|299078670|emb|CBJ51328.1| DNA ligase [Ralstonia solanacearum PSI07]
Length = 813
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 243/607 (40%), Positives = 366/607 (60%), Gaps = 41/607 (6%)
Query: 26 HRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHH 85
+R+ YY+ D P + D +YD+L EL+ +E +PEL T DS T VG V H
Sbjct: 25 NRYAHEYYVLDQPSVPDAEYDRLYRELEALEADHPELKTPDSPTLRVGGAVLPEFAPVRH 84
Query: 86 TFKMMSL--DNGFSDEDVIIFNKRITNELKLTKN---IEYIAELKFDGIAVNLRYEYGYL 140
M+S+ + + + + F+ + EL L ++ +EY AELKFDG+A+NLRYE G+L
Sbjct: 85 VVPMLSIRTETDTTADGALAFDASVRRELGLAESDPSVEYAAELKFDGLAINLRYEKGFL 144
Query: 141 KQASTRGDGNIGENITTNIHIIHKIPLVLNI--KYPPELLEVRCEVLIYKKDFIKLNKYR 198
QA+TRGDG GE++T NI I +IPL L P++LEVR EV + + DF +LN +
Sbjct: 145 VQAATRGDGTTGEDVTQNIRTIRQIPLGLRPVNGAVPDVLEVRGEVYMRRDDFERLNARQ 204
Query: 199 YHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG-MNMPSSHSELLNWYQ 257
G K F NPRN AAG +RQL+PK+ + L FFA+G+GE G MP +H+ +L+
Sbjct: 205 RERGEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFAYGLGEAAGWAEMPGTHAGVLDALV 264
Query: 258 KIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP 317
G + E + ++G L+ F+ I KR +LP++IDGVVYK+N L+ Q++LGF +R P
Sbjct: 265 AFGFPVSHERAAVTGGEGLVRFHADIRAKRDSLPFDIDGVVYKVNSLALQRELGFRTREP 324
Query: 318 RFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK 377
R+A+A+K+ ++EALT +++I +Q+GRTG ITPVA L PV + G+T+T ATLHNE E+ RK
Sbjct: 325 RWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARLVPVFVGGVTVTNATLHNEDEVRRK 384
Query: 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDS---------------KIFKIPNICPICN 422
++++GDTV+V R+G+VIP++ + +L RP + F++P CP+C
Sbjct: 385 DVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGSDLFNPAQQPKYPPFELPKSCPVCG 444
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
S ++ E +ARCSG C AQRK ++HF+ R+ M+I GLG++ I+ LV V
Sbjct: 445 SHVVREEGEAVARCSGGLF-CSAQRKEAIRHFAGRRMMDIEGLGERYIDNLVELEYVHGI 503
Query: 483 VDLYKINFKNLLRLDR-----------------VSNKLANNILLAIQKSKLTTFSRFIYA 525
DLY++ + L + R ++ K A N+L IQ SK +RF++A
Sbjct: 504 ADLYRLTLDDFLEMKRRADERDGVTPETVAAGKIATKWAENLLAGIQASKTPPLARFLFA 563
Query: 526 LGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLIS 585
LGIRHVGE+TAK LA++ +L + +A LL +P +G+T +A F +P ++ +
Sbjct: 564 LGIRHVGESTAKTLADWLGSLAVIRRAPAPLLLTLPDVGATVAEAIADFFAEPKNQQALD 623
Query: 586 QLRDVGI 592
L G+
Sbjct: 624 ALLAAGV 630
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 36/156 (23%)
Query: 525 ALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLI 584
ALG+ + T +K+LA L + A QL +P S + + ++ HR +
Sbjct: 654 ALGVPKLTATRSKQLATLVPALAQLATADAAQLEGLPADVSAS---LLDWLEADDHRARL 710
Query: 585 SQLRDVGIYWLNN----------------------PN-----------TKGGKVVNFISK 611
+QL + L PN G KV +SK
Sbjct: 711 AQLEALRAELLAAMPAGTAEEGALSGKTVVLTGTLPNLTRDAAKAMLEAAGAKVSGSVSK 770
Query: 612 NTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
T+YLV G + G KL +A +L +++LDE + +++
Sbjct: 771 KTDYLVAGVEAGSKLARAQELGVRVLDEAGMLALLQ 806
>gi|88861394|ref|ZP_01136024.1| NAD-dependent DNA ligase [Pseudoalteromonas tunicata D2]
gi|88816660|gb|EAR26485.1| NAD-dependent DNA ligase [Pseudoalteromonas tunicata D2]
Length = 673
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 256/665 (38%), Positives = 385/665 (57%), Gaps = 33/665 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ LK +L +N YY+ DNP + D++YD+++ EL +E +YP+ L+ DS +Q VG
Sbjct: 8 QIAALKVQLEEYNYQYYVLDNPSVPDSEYDRVMRELIALETQYPQFLSADSPSQKVGGEA 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN F + + FNKR+ + LK T + + E K DG+AV++ Y+
Sbjct: 68 LGSFSQVQHLVPMLSLDNAFDETEFRSFNKRLQDRLKDTTTLTFCCEPKLDGLAVSILYQ 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GENIT N+ I +PL L + P LEVR EV + F K+N+
Sbjct: 128 DGVLVQAATRGDGQTGENITENVKTIRNVPLKLRGESIPHRLEVRGEVFMDSAGFAKMNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
K F NPRNAAAG LRQL+ KI + L F+A+G+G + G +P H L
Sbjct: 188 LAIKNDGKVFANPRNAAAGSLRQLDSKITAKRPLMFYAYGMGIIEGGVVPDDHFAQLQAL 247
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
GL + E +++GV+ + +Y+ I +R L YEIDGVV K+N + Q+ LGF +RA
Sbjct: 248 GDWGLPMSPETKLVTGVDDALAYYQDIMNRRSQLKYEIDGVVIKVNDKALQQTLGFVARA 307
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN+ EI R
Sbjct: 308 PRWAIAFKFPAQEEMTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHNQDEIER 367
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGDTV++ R+G+VIP+IT +L+ R D+K P+ CP+C SK+ +ARC
Sbjct: 368 LGVKIGDTVIIRRAGDVIPQITQVVLAERKTDAKDIVFPSNCPVCQSKVERTVGEAVARC 427
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
SG + C AQRK ++HF SRKA +I G+G K++E+LV ++ T +++ + +L L
Sbjct: 428 SGGLV-CGAQRKEAIKHFVSRKAFDIDGMGDKIVEQLVERELIHTPAEIFTLRQGHLESL 486
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A ++ AI +K TT +RF+Y+LGIR VGE TA LAN++ L+ + A+ +
Sbjct: 487 ERMGPKSAEKLVAAIGNAKQTTLARFLYSLGIREVGEATALNLANHYLTLDAIMAASVDS 546
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL--------------------- 595
L + +G K F + +R ++ L GI W
Sbjct: 547 LQEVADVGEIVAKHVNFFFREAHNRAVVDALIAAGITWAALEPKSEAEQPLAGLTYVLTG 606
Query: 596 -----------NNPNTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
N G KV +S T+ LV G K G KL KA +L IK+L E + +
Sbjct: 607 TLLQMGRSDAKNRLQALGAKVSGSVSAKTDALVAGDKAGSKLTKAQELGIKVLFEDDLIA 666
Query: 645 IVKGF 649
++ +
Sbjct: 667 LLAQY 671
>gi|294649516|ref|ZP_06726937.1| NAD-dependent DNA ligase LigA [Acinetobacter haemolyticus ATCC
19194]
gi|292824577|gb|EFF83359.1| NAD-dependent DNA ligase LigA [Acinetobacter haemolyticus ATCC
19194]
Length = 675
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 256/660 (38%), Positives = 392/660 (59%), Gaps = 38/660 (5%)
Query: 27 RHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHT 86
+HN AYY+ D P ISD++YD L +LK +E++YPE + D+ T VG + V H
Sbjct: 19 KHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPECIQADTPTNKVGGQALSKFESVTHV 78
Query: 87 FKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTR 146
M+SL N F+ E++ F +RI L + ++Y ELK DG+A++L YE G L + TR
Sbjct: 79 VPMLSLGNVFNQEELFAFARRIDERLP-NQKVQYEVELKLDGLAISLWYENGVLVRGVTR 137
Query: 147 GDGNIGENITTNIHIIHKIPLVLNIKYP--PELLEVRCEVLIYKKDFIKLNKYRYHLGLK 204
GDG GE+IT N+ I +P VL+ + P+LLEVR EVL+ K+ F KLN + G K
Sbjct: 138 GDGETGEDITQNVKTIRNLPKVLSGQSQAIPQLLEVRGEVLMPKQGFEKLNADQAAKGEK 197
Query: 205 KFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSIC 264
F NPRNAAAG LRQL+P I ++ L F+A+G+ + + + ++ + L+W K G I
Sbjct: 198 TFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCQPHHGLATMHDSLHWLTKFGFEIA 257
Query: 265 GEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYK 324
+ + ++ + Y++I +R +L EIDG+V K++ L Q++LGF SR PR+A AYK
Sbjct: 258 ERQYLCESIEEVQQRYEQIQQERPDLNVEIDGMVVKVDDLKQQQQLGFLSREPRWATAYK 317
Query: 325 FLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDT 384
F ++ ALTK++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI+R ++++GDT
Sbjct: 318 FPAQAALTKVENIDWQVGRTGTLTPVARLTPVFVGGVTVSNVTLHNIGEIHRLDVRVGDT 377
Query: 385 VVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECI 444
V V+R+G+VIPK+ RP D++I +P CP+C+S ++ E +ARCSG + C
Sbjct: 378 VSVYRTGDVIPKVEKVWAEFRPTDAEIVHLPTNCPVCDSPVVMPEGEALARCSGG-LYCA 436
Query: 445 AQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF--KNLLRLDRVSNK 502
AQR ++HF SRKA++I GLG + +E L++ +++ D+Y ++ + LL ++++ K
Sbjct: 437 AQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHLHTHREKLLTIEKMGEK 496
Query: 503 LANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPK 562
N++ AI+ SK TT +RFIY LGIR VGETTA+ LAN F+ L+ + A E L P
Sbjct: 497 SVQNLIDAIEASKKTTLARFIYGLGIRGVGETTARMLANTFQTLDALKAADVESLKKTPD 556
Query: 563 IGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------------- 601
+G T + F P + ++ +L GI+W + P
Sbjct: 557 VGDITAEWIADFFQAPHNIEVLDRLMAAGIHW-DAPTAPTRQPLNGESWVVTGTLESMGR 615
Query: 602 ----------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGFST 651
G +V +S T +V G+K G KLEKA KL I++++E+ F+ + + T
Sbjct: 616 DEATQRLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAQKLEIRVMNEQEFLDFLAQYQT 675
>gi|381198529|ref|ZP_09905867.1| DNA ligase [Acinetobacter lwoffii WJ10621]
Length = 679
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 266/672 (39%), Positives = 394/672 (58%), Gaps = 36/672 (5%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S + ++ +L + L +HN AYY+ D P I D++YDQL +LK +EE+YPE + DS
Sbjct: 5 STVVAQMRQLIQILAQHNHAYYVMDQPTILDSEYDQLFHQLKALEEQYPECIQPDSPINK 64
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG V H M+SL N F+ E++ F +R L + I+Y ELKFDG+A+
Sbjct: 65 VGAKPLAKFTSVTHVVPMLSLGNVFNQEELFAFARRAEERLP-NQTIQYDVELKFDGLAI 123
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVL--NIKYPPELLEVRCEVLIYKK 189
+L YE G L + TRGDG GE+IT N+ I +P VL N P LLEVR EVL+ K
Sbjct: 124 SLWYEQGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLTTNQGEVPTLLEVRGEVLMPKA 183
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F KLN G K F NPRNAAAG LRQL+P I ++ L F+A+G+ + + S+
Sbjct: 184 GFEKLNAENEAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCEPNHGQSTM 243
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
SE L W Q+ G ++ + V + ++ Y++IN +R L EIDG+V K+N L Q++
Sbjct: 244 SESLEWLQQFGFAVGERHFVCDSIQEVQAVYEQINAERPQLSVEIDGMVIKVNSLKQQQQ 303
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LGF SR PR+A AYKF + ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLH
Sbjct: 304 LGFLSREPRWATAYKFPAVAALTTVENIDWQVGRTGTLTPVARLNPVAVGGVTVSNVTLH 363
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI+R +++IGDTV V+RSG+VIPK+ RP D+ ++P+ CP+C S ++ E
Sbjct: 364 NIGEIHRLDVRIGDTVSVYRSGDVIPKVEKVWPEFRPVDAIEVELPSQCPVCESPVVMPE 423
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI- 488
+ARCSG + C AQR ++HF SRKA++I GLG + +E L++ +++ D+Y +
Sbjct: 424 GEALARCSGG-LYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHLH 482
Query: 489 -NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLE 547
+ + LL ++++ K N++ +I+ SK TT + FIYALGIR VGETTA+ LAN F+ L+
Sbjct: 483 EHREKLLTIEKMGEKSVQNLIDSIENSKKTTLAAFIYALGIRGVGETTARMLANTFQTLD 542
Query: 548 CMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNN 597
+ A E L P +G T + + F P + ++ +L GI+W LN
Sbjct: 543 ALRVADIEALKKTPDVGDITAEWIVDFFQAPHNLEVLDRLLAAGIHWDAPVAPSRQPLNG 602
Query: 598 PN--------------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
+ G +V +S T +V G+K G KL+KA KL I ++
Sbjct: 603 ESWVVTGTLSTMGRDEATQLLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAEKLGIAVI 662
Query: 638 DEKNFVKIVKGF 649
+E F++++K +
Sbjct: 663 NEAEFIQLMKDY 674
>gi|445432713|ref|ZP_21439386.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC021]
gi|444758051|gb|ELW82553.1| DNA ligase (NAD+) [Acinetobacter baumannii OIFC021]
Length = 678
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 260/668 (38%), Positives = 395/668 (59%), Gaps = 38/668 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + + +HN AYY+ D P ISD++YD L +LK +EE+YPEL+ DS T VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPTTKVGGQA 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE
Sbjct: 69 LSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEVRCEVLIYKKDFIKL 194
G L + TRGDG GE+IT N+ I +P VL+ KY P LLEVR EVL+ K F KL
Sbjct: 128 NGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSGFEKL 187
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N + G K F NPRNAAAG LRQL+P I + L F+A+G+ + + ++ + L
Sbjct: 188 NADQEAKGEKTFANPRNAAAGSLRQLDPNIAAGRPLAFYAYGIAQCEPNHGLTTMHDSLQ 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
W ++G I + + + ++ + Y++I +R +L EIDG+V K++ L Q++LGF S
Sbjct: 248 WLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPSLQVEIDGMVVKVDDLKQQQQLGFLS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R PR+A AYKF ++ ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI
Sbjct: 308 REPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEI 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
+R ++++GDTV V+R+G+VIPK+ RP ++++ +P CP+C S ++ E +A
Sbjct: 368 HRLDVRVGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVMPEGEALA 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKN 492
RCSG + C AQR ++HF SRKAM+I GLG + +E L+ +++ D+Y + + +
Sbjct: 428 RCSGG-LYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHLHEHRET 486
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A
Sbjct: 487 LLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA 546
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
E L P +G T + F P + ++ +L GI+W + P
Sbjct: 547 NVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWV 605
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G +V +S T +V G+K G KLEKA KL+I +++E +
Sbjct: 606 LTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLDIPVMNETD 665
Query: 642 FVKIVKGF 649
F+ ++ +
Sbjct: 666 FLSLMASY 673
>gi|424056746|ref|ZP_17794263.1| DNA ligase [Acinetobacter nosocomialis Ab22222]
gi|407440279|gb|EKF46796.1| DNA ligase [Acinetobacter nosocomialis Ab22222]
Length = 669
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 260/659 (39%), Positives = 388/659 (58%), Gaps = 38/659 (5%)
Query: 27 RHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHT 86
+HN AYY+ D P ISD++YD L +LK +EE+YPEL+ DS T VG + V H
Sbjct: 10 KHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSPTTKVGGQALSKFESVTHV 69
Query: 87 FKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTR 146
M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE G L + TR
Sbjct: 70 VPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYENGVLVRGVTR 128
Query: 147 GDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEVRCEVLIYKKDFIKLNKYRYHLGLK 204
GDG GE+IT N+ I +P VL+ KY P LLEVR EVL+ K F KLN + G K
Sbjct: 129 GDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMPKSGFEKLNADQEAKGEK 188
Query: 205 KFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSIC 264
F NPRNAAAG LRQL+P I + L F+A+G+ + + ++ + L W ++G I
Sbjct: 189 TFANPRNAAAGSLRQLDPNIAAGRPLAFYAYGIAQCEPNHGLTTMHDSLQWLTELGFQIA 248
Query: 265 GEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYK 324
+ + + ++ + Y++I +R NL EIDG+V K++ L Q++LGF SR PR+A AYK
Sbjct: 249 ERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQQQLGFLSREPRWATAYK 308
Query: 325 FLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDT 384
F ++ ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI+R ++++GDT
Sbjct: 309 FPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEIHRLDVRVGDT 368
Query: 385 VVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECI 444
V V+R+G+VIPK+ RP ++++ +P CP+C S ++ E +ARCSG + C
Sbjct: 369 VSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVMPEGEALARCSGG-LYCA 427
Query: 445 AQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKNLLRLDRVSNK 502
AQR ++HF SRKAM+I GLG + +E L+ +++ D+Y + + + LL ++++ K
Sbjct: 428 AQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHLHEHRETLLGIEKMGEK 487
Query: 503 LANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPK 562
N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A E L P
Sbjct: 488 SVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAANVEALKKTPD 547
Query: 563 IGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------------- 601
+G T + F P + ++ +L GI+W + P
Sbjct: 548 VGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWVLTGTLEQMTR 606
Query: 602 ----------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGFS 650
G +V +S T +V G+K G KLEKA KL I +++E +F+ ++ +
Sbjct: 607 DQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPVMNETDFLSLMASYG 665
>gi|166216279|sp|A0LI67.2|DNLJ_SYNFM RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
Length = 675
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 255/669 (38%), Positives = 386/669 (57%), Gaps = 40/669 (5%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
K R+ L++E+ HN YY+ D P ISD YD L EL ++EE YP L+T DS TQ V
Sbjct: 6 KAHARIEALREEIRHHNYLYYVLDRPEISDEAYDGLFRELVRLEESYPALITPDSPTQRV 65
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
G E HT M+SL+N S+ +V F +R+ L +++++AE K DG+AV
Sbjct: 66 GAAPAEKFLPFPHTIPMLSLENAMSEAEVFEFARRVRKILGDRGDVDFMAEPKMDGLAVE 125
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVL----NIKYPPELLEVRCEVLIYK 188
L YE G L A TRGDG +GE++T N I IPL L PP + VR EV + +
Sbjct: 126 LVYENGELTGAGTRGDGYVGEDVTRNAKTIRAIPLKLYAGAGGASPPARIAVRGEVYMDR 185
Query: 189 KDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSS 248
KDF LN+ R G F NPRNAAAG LRQL+P + + L F +GVGE+ G +
Sbjct: 186 KDFAALNRSREQAGEPLFANPRNAAAGSLRQLDPSVTAARSLKAFFYGVGEVSGYRF-KT 244
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
++ L ++ GL + V + + FY +I R LP+EIDGVV K+N + Q+
Sbjct: 245 QAQTLEQLRRWGLPVNPLSRVCPSIEDAVSFYNEIAAGRDALPFEIDGVVVKVNSIEWQE 304
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
LG SR+PR+A+AYKF +A T++ I +Q+GRTG++TPVA L+PV + G+T+ RATL
Sbjct: 305 MLGEKSRSPRWAIAYKFSPHQARTRVLDIKVQVGRTGVLTPVAELEPVTVGGVTVRRATL 364
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYI 428
HN+ E+ RK+I++ D V+V R+G+VIP++ I R ++F++P CP C S+++ +
Sbjct: 365 HNQDEVERKDIRVRDQVMVRRAGDVIPEVVEVIGEARTGGEEVFQMPGQCPSCGSEVVRL 424
Query: 429 ESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488
+ RC C AQ KA L+HF+SR AMNI GLGK ++ LV+ IV + DLY++
Sbjct: 425 PEEAVHRCLNR--NCPAQIKASLRHFASRDAMNIEGLGKNIVSMLVDRGIVESVSDLYRL 482
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
+ + L +L + K + N++ +I++SK T + F+YALGI HVG A+ LA F L+
Sbjct: 483 SVETLEQLPGFAGKSSRNLVESIERSKKTNLADFLYALGIYHVGSHVARLLAERFGTLDA 542
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI--------------YW 594
+ +A+ E+L+++ +G ++ + + + P +R L+ L G+ +W
Sbjct: 543 VRRASVEELMSVNGVGEVVARSVVHYFSLPANRTLVESLLSAGLEMAATEPEAGPVDAFW 602
Query: 595 -------------LNNPN------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIK 635
+ N ++G +V + +S+ T+ +V G PG K+EKA +L I
Sbjct: 603 NGKTVVFTGALSSMTRSNAAALTASRGARVSDSVSRKTDIVVAGADPGSKVEKARQLGIT 662
Query: 636 ILDEKNFVK 644
ILDE+ F++
Sbjct: 663 ILDEREFLE 671
>gi|423207677|ref|ZP_17194233.1| DNA ligase [Aeromonas veronii AMC34]
gi|404620744|gb|EKB17641.1| DNA ligase [Aeromonas veronii AMC34]
Length = 670
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 266/672 (39%), Positives = 386/672 (57%), Gaps = 34/672 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S + R +L + L + YY+ DNP + D +YD+L+ EL +E +PEL T S +
Sbjct: 1 MSDILSRHRQLCELLTEYGHQYYVLDNPTVPDAEYDRLMRELIALEADHPELKTPASPSV 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG K V H M+SLDN FS E+++ F +R+++ LK + E K DG+A
Sbjct: 61 RVGGQPLTAFKQVSHEIPMLSLDNVFSSEELLAFEQRMSDRLKREVRFTFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L Y G L QA+TRGDG GE IT N+ I IPL L PE LEVR EV + K
Sbjct: 121 VSLLYVNGQLVQAATRGDGATGEEITENVRTIKAIPLALRGSGWPERLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F +N G K F NPRNAAAG LRQL+ +I ++ L F+A+GVG + SH
Sbjct: 181 FEAMNAKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYGVGVGGELLG-GSHF 239
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
LN ++ GL + E + G F+ I +R LPYEIDGVVYK++ + Q++L
Sbjct: 240 GRLNQLKEWGLPLSPEVKLKEGAAGCQAFHDDILARRGELPYEIDGVVYKVDAIPLQEEL 299
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A A+KF ++E +T ++ + Q+GRTG +TPVA LKPV + G+T++ ATLHN
Sbjct: 300 GFVARAPRWATAHKFPAQEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHN 359
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + +GDTV+V R+G+VIP+I + + + RP+D++ P CP+C S + +E
Sbjct: 360 ADEIERLGVMVGDTVIVRRAGDVIPQIVAVVEAQRPSDARAILFPTECPVCGSAVERLEG 419
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARCSG C AQRK ++HF++R+AM++ GLG K++E+LV+ +V T DL+ +N
Sbjct: 420 EAVARCSGGLF-CEAQRKEAIKHFAARRAMDVDGLGDKIVEQLVDKGLVKTPADLFSLNA 478
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ AI ++ TT RF++ALGIR VGE TA LAN+F L+ +
Sbjct: 479 IQLASLERMGQKSALNLVAAIDAARSTTLPRFLFALGIREVGEATALNLANHFLTLDALR 538
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
A+ EQLL + +G K F+ QP + ++ L GI+W
Sbjct: 539 AASVEQLLEVADVGDVVAKHVYYFLRQPHNVEVLEALLAAGIHWPAIEKKEAAEQPFAGK 598
Query: 595 ----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
L+ + K G KV +S T+ LV G+ G KL KA +L I I
Sbjct: 599 TFVLTGTLTTLSRNDAKAALQALGAKVAGSVSAKTDVLVAGEAAGSKLAKAQELGIAIWS 658
Query: 639 EKNFVKIVKGFS 650
E+ ++++G S
Sbjct: 659 EEELQQVLQGQS 670
>gi|116748867|ref|YP_845554.1| NAD-dependent DNA ligase [Syntrophobacter fumaroxidans MPOB]
gi|116697931|gb|ABK17119.1| DNA ligase, NAD-dependent [Syntrophobacter fumaroxidans MPOB]
Length = 694
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 255/669 (38%), Positives = 386/669 (57%), Gaps = 40/669 (5%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
K R+ L++E+ HN YY+ D P ISD YD L EL ++EE YP L+T DS TQ V
Sbjct: 25 KAHARIEALREEIRHHNYLYYVLDRPEISDEAYDGLFRELVRLEESYPALITPDSPTQRV 84
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
G E HT M+SL+N S+ +V F +R+ L +++++AE K DG+AV
Sbjct: 85 GAAPAEKFLPFPHTIPMLSLENAMSEAEVFEFARRVRKILGDRGDVDFMAEPKMDGLAVE 144
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVL----NIKYPPELLEVRCEVLIYK 188
L YE G L A TRGDG +GE++T N I IPL L PP + VR EV + +
Sbjct: 145 LVYENGELTGAGTRGDGYVGEDVTRNAKTIRAIPLKLYAGAGGASPPARIAVRGEVYMDR 204
Query: 189 KDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSS 248
KDF LN+ R G F NPRNAAAG LRQL+P + + L F +GVGE+ G +
Sbjct: 205 KDFAALNRSREQAGEPLFANPRNAAAGSLRQLDPSVTAARSLKAFFYGVGEVSGYRF-KT 263
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
++ L ++ GL + V + + FY +I R LP+EIDGVV K+N + Q+
Sbjct: 264 QAQTLEQLRRWGLPVNPLSRVCPSIEDAVSFYNEIAAGRDALPFEIDGVVVKVNSIEWQE 323
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
LG SR+PR+A+AYKF +A T++ I +Q+GRTG++TPVA L+PV + G+T+ RATL
Sbjct: 324 MLGEKSRSPRWAIAYKFSPHQARTRVLDIKVQVGRTGVLTPVAELEPVTVGGVTVRRATL 383
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYI 428
HN+ E+ RK+I++ D V+V R+G+VIP++ I R ++F++P CP C S+++ +
Sbjct: 384 HNQDEVERKDIRVRDQVMVRRAGDVIPEVVEVIGEARTGGEEVFQMPGQCPSCGSEVVRL 443
Query: 429 ESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488
+ RC C AQ KA L+HF+SR AMNI GLGK ++ LV+ IV + DLY++
Sbjct: 444 PEEAVHRCLNR--NCPAQIKASLRHFASRDAMNIEGLGKNIVSMLVDRGIVESVSDLYRL 501
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
+ + L +L + K + N++ +I++SK T + F+YALGI HVG A+ LA F L+
Sbjct: 502 SVETLEQLPGFAGKSSRNLVESIERSKKTNLADFLYALGIYHVGSHVARLLAERFGTLDA 561
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI--------------YW 594
+ +A+ E+L+++ +G ++ + + + P +R L+ L G+ +W
Sbjct: 562 VRRASVEELMSVNGVGEVVARSVVHYFSLPANRTLVESLLSAGLEMAATEPEAGPVDAFW 621
Query: 595 -------------LNNPN------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIK 635
+ N ++G +V + +S+ T+ +V G PG K+EKA +L I
Sbjct: 622 NGKTVVFTGALSSMTRSNAAALTASRGARVSDSVSRKTDIVVAGADPGSKVEKARQLGIT 681
Query: 636 ILDEKNFVK 644
ILDE+ F++
Sbjct: 682 ILDEREFLE 690
>gi|389808050|ref|ZP_10204460.1| NAD-dependent DNA ligase LigA [Rhodanobacter thiooxydans LCS2]
gi|388442928|gb|EIL99087.1| NAD-dependent DNA ligase LigA [Rhodanobacter thiooxydans LCS2]
Length = 796
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 246/602 (40%), Positives = 356/602 (59%), Gaps = 28/602 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L+ ++ + N Y++ D+P I+D +YD+L+ EL+ +E +YP L T DS T+ VG
Sbjct: 13 RAAALRAQIEQANYRYHVLDDPDITDAEYDRLMRELEALEAEYPVLATADSPTRKVGARA 72
Query: 77 GENSKYVHHTFKMMSLDNGF-----SDED----VIIFNKRITNELKLTKNIEYIAELKFD 127
V H M+SL N F SD D V F +RI K + + + E K D
Sbjct: 73 SGGFAEVRHAIPMLSLGNAFEQDGDSDRDRFREVAEFERRIEQTTKRSDPV-FSVEPKLD 131
Query: 128 GIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIY 187
G+A++LRYE+G Q +TRGDG GE++T N+ + IPL L K P++LEVR EV++
Sbjct: 132 GLAISLRYEHGVFVQGATRGDGETGEDVTANLRTVRAIPLKLRGKGWPDVLEVRGEVIML 191
Query: 188 KKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPS 247
KDF N+Y G K NPRN AAG LRQL+P + + L FFA+ VGE+ G +P
Sbjct: 192 HKDFEAFNEYARKHGEKPLANPRNGAAGSLRQLDPAVTAKRRLSFFAYAVGEVEGGELPP 251
Query: 248 SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQ 307
+HS L ++ G + E G + LI +Y +I KR +LPY+IDGVVYK++ + Q
Sbjct: 252 THSATLRQLREWGFPVSPEVDTARGFDGLIAYYHRIGGKRDSLPYDIDGVVYKLDDYAGQ 311
Query: 308 KKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRAT 367
+K+GF SRAPR+ALA+KF ++E T ++AI IQIGRTG TPVA L PV + G+T+T AT
Sbjct: 312 RKMGFVSRAPRWALAHKFPAQEQTTTVEAIEIQIGRTGAATPVARLAPVQVAGVTVTNAT 371
Query: 368 LHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIY 427
LHN ++ R ++++GDTV+V R+G+VIP++ + LRP + + +P CP+C S+++
Sbjct: 372 LHNADQVARLDVRVGDTVIVRRAGDVIPEVVRVMTELRPPHTHPWHMPARCPVCGSELLR 431
Query: 428 IESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYK 487
E RCSG I C AQRK L HF+SR+AM+I GLG++ E LV +IV + DLY
Sbjct: 432 EEGEAAYRCSGGLI-CAAQRKEALIHFASRRAMDIEGLGERFAEALVELDIVHSPADLYG 490
Query: 488 INFKNLLRLDR-----------------VSNKLANNILLAIQKSKLTTFSRFIYALGIRH 530
++ + + + R ++ K A N++ I+ SK TT +RF+YALGI H
Sbjct: 491 LSVDDFVEMKRRIDERDGTTPETVKAGKIATKWAENLVAGIEASKHTTLARFLYALGIMH 550
Query: 531 VGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDV 590
+GE+TAK LA + LE + L +P IGS + F Q + ++ L D
Sbjct: 551 IGESTAKTLAGWLGRLEFVRSMPAAVLRVLPDIGSEVATSIAGFFAQAGNEQVVDALLDA 610
Query: 591 GI 592
GI
Sbjct: 611 GI 612
>gi|427425700|ref|ZP_18915784.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-136]
gi|425697563|gb|EKU67235.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-136]
Length = 679
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 259/669 (38%), Positives = 393/669 (58%), Gaps = 38/669 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + + +HN AYY+ D P ISD++YD L +LK +EE+YP+L+ DS T VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFRQLKALEEQYPDLVQSDSPTTKVGGQA 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE
Sbjct: 69 LSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKY--PPELLEVRCEVLIYKKDFIKL 194
G L + TRGDG GE+IT N+ I +P VL+ + P LLEVR EVL+ K F KL
Sbjct: 128 NGVLIRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPRLLEVRGEVLMPKSGFEKL 187
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N + G K F NPRNAAAG LRQL+P I + L F+A+G+ + + ++ + L
Sbjct: 188 NAEQEAKGDKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMHDSLQ 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
W K+G I + + + ++ + Y++I +R +L EIDG+V K++ L Q++LGF S
Sbjct: 248 WLTKLGFEIAERQYLCNSIQEVQQRYEQIQQERLDLQVEIDGMVVKVDDLKQQQQLGFLS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R PR+A AYKF ++ ALT + I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI
Sbjct: 308 REPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEI 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
+R ++++GDTV V+R+G+VIPK+ RP D++I +P CP+C S ++ E +A
Sbjct: 368 HRLDVRVGDTVSVYRTGDVIPKVEKVWPEFRPVDAEIVHLPENCPVCASPVVMPEGEALA 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKN 492
RCSG + C AQR ++HF SRKA++I GLG + +E L++ +++ D+Y + + +
Sbjct: 428 RCSGG-LYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHLHEHRET 486
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A
Sbjct: 487 LLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA 546
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
E L P +G T + F P + ++ +L GI+W + P
Sbjct: 547 DVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWV 605
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G +V +S T +V G+K G KLEKA KL I +++E +
Sbjct: 606 LTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAVMNETD 665
Query: 642 FVKIVKGFS 650
F+ ++ +
Sbjct: 666 FLSLMASYG 674
>gi|359428969|ref|ZP_09219997.1| DNA ligase [Acinetobacter sp. NBRC 100985]
gi|358235550|dbj|GAB01536.1| DNA ligase [Acinetobacter sp. NBRC 100985]
Length = 675
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 256/670 (38%), Positives = 395/670 (58%), Gaps = 38/670 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + + +HN AYY+ D P ISD++YD L +LK +E++YPE + D+ T VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPECIQADTPTNKVGGQA 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ ED+ F +RI L + ++Y ELK DG+A++L YE
Sbjct: 69 LSKFESVTHAVPMLSLGNVFNQEDLFAFARRIDERLP-NQKVQYDVELKLDGLAISLWYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYP--PELLEVRCEVLIYKKDFIKL 194
G L + TRGDG GE+IT N+ I +P VL+ ++ P+ LEVR EVL+ K F KL
Sbjct: 128 NGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSSQHQAIPDFLEVRGEVLMPKSGFEKL 187
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N + G K F NPRNAAAG LRQL+P + ++ L F+A+G+ + + ++ + L+
Sbjct: 188 NADQEAKGEKTFANPRNAAAGSLRQLDPNVAASRPLAFYAYGIAQCVPNHGLATMHDSLH 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
W K G I + + + ++ + Y++I +R NL EIDG+V K++ L Q++LGF S
Sbjct: 248 WLTKFGFEIAERQFLCASIEEVQQRYEQIQQERSNLKVEIDGMVIKVDSLKQQQQLGFLS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R PR+A AYKF ++ ALTK++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI
Sbjct: 308 REPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLAPVFVGGVTVSNVTLHNIGEI 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
+R ++++GDTV V+R+G+VIPK+ RP D +I +P+ CP+C+S ++ E +A
Sbjct: 368 HRLDVRVGDTVSVYRTGDVIPKVEKVWAEFRPADVEIVHLPSNCPVCDSPVVMPEGEALA 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKN 492
RCSG + C AQR ++HF SRKAM+I GLG + +E L++ +++ D+Y + +
Sbjct: 428 RCSGG-LYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLHLDLLKDVADIYHLHEHRDK 486
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LL ++++ K N++ AI+ SK TT +RFIY LGIR VGETTA+ LAN F+ E + A
Sbjct: 487 LLTIEKMGEKSVQNLIDAIEASKKTTLARFIYGLGIRGVGETTARMLANTFQTFEALKAA 546
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
E L P +G T + F P + ++ +L GI+W + P
Sbjct: 547 DIEALKKTPDVGDITAEWIADFFQAPHNIEVLDRLLAAGIHW-DAPTAPTRQPLNGESWV 605
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G +V +S T +V G+K G KL+KA KL I++++E+
Sbjct: 606 VTGTLESMGRDEATQKLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAQKLEIRVMNEQE 665
Query: 642 FVKIVKGFST 651
F++ + +
Sbjct: 666 FLEFLTQYEA 675
>gi|56418811|ref|YP_146129.1| NAD-dependent DNA ligase LigA [Geobacillus kaustophilus HTA426]
gi|81348272|sp|Q5L3B9.1|DNLJ_GEOKA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|56378653|dbj|BAD74561.1| DNA ligase (polydeoxyribonucleotide synthase[NAD+]) [Geobacillus
kaustophilus HTA426]
Length = 670
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 254/664 (38%), Positives = 389/664 (58%), Gaps = 45/664 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R EL++ LHR+ YY+ D P + D +YD+L+ EL IEE+YPEL T DS TQ +G
Sbjct: 9 RAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELMAIEEQYPELKTSDSPTQRIGGPP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E + V H MMSL N F + D+ F++R+ E+ Y+ ELK DG+AV++RYE
Sbjct: 69 LEAFRKVTHVVPMMSLANAFDEGDLRDFDRRVRQEVG---EAAYVCELKIDGLAVSVRYE 125
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
GY Q +TRGDG GE+IT N+ I +PL L P LE R E + K F++LN+
Sbjct: 126 DGYFVQGATRGDGTTGEDITENLRTIRSLPLRLK---EPVSLEARGEAFMPKASFLRLNE 182
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G + F NPRNAAAG LRQL+PK+ ++ L F +G+ + + SHSE L++
Sbjct: 183 ERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGI-ESHSEALDYL 241
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
Q +G + E + ++++I F + + KR LPYEIDG+V K++ + Q++LG T+++
Sbjct: 242 QALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQRELGATAKS 301
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + I + +GRTG++TP A+L+PV + G T+ RATLHNE I
Sbjct: 302 PRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATLHNEDFIRE 361
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD V++ ++G++IP++ ++ R D F +P CP C S+++ +E + RC
Sbjct: 362 KDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFAMPTHCPECESELVRLEGEVALRC 421
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
C AQ + L HF+SR AMNI GLG+K++ +L NA +V DLY++ + L+ L
Sbjct: 422 LNP--NCPAQLRERLIHFASRAAMNIEGLGEKVVTQLFNAGLVRDVADLYRLTKEQLIGL 479
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N+L AI+ SK + R ++ LGIR+VG A+ LA +F+ +E + +AT+E+
Sbjct: 480 ERMGEKSATNLLAAIEASKQNSLERLLFGLGIRYVGAKAAQLLAEHFETMERLERATKEE 539
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI-YWLNNPNTK-------------- 601
L+ +P+IG A F QP L+ +LR G+ P
Sbjct: 540 LMAVPEIGEKMADAITAFFAQPEATELLQELRAYGVNMAYKGPKRSAEAPADSAFAGKTV 599
Query: 602 ---------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
GG+V +S++T+ ++ G+ G KLEKA +L I+I DE
Sbjct: 600 VLTGKLASMSRNEAKEEIERLGGRVTGSVSRSTDLVIAGEDAGSKLEKAQQLGIEIWDES 659
Query: 641 NFVK 644
F++
Sbjct: 660 RFLQ 663
>gi|260550982|ref|ZP_05825187.1| DNA ligase [Acinetobacter sp. RUH2624]
gi|260405930|gb|EEW99417.1| DNA ligase [Acinetobacter sp. RUH2624]
Length = 691
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 262/683 (38%), Positives = 399/683 (58%), Gaps = 38/683 (5%)
Query: 3 FHAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPEL 62
F K + + + ++ +L + + +HN AYY+ D P ISD++YD L +LK +EE+YPEL
Sbjct: 8 FMVNKIMAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEL 67
Query: 63 LTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIA 122
+ DS T VG + V H M+SL N F+ ED+ F +R+ L + ++Y
Sbjct: 68 VQTDSPTTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEV 126
Query: 123 ELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-KYP-PELLEV 180
ELK DG+A++L YE G L + TRGDG GE+IT N+ I +P VL+ KY P LLEV
Sbjct: 127 ELKLDGLAISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEV 186
Query: 181 RCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL 240
R EVL+ K F KLN + G K F NPRNAAAG LRQL+P I + L F+A+G+ +
Sbjct: 187 RGEVLMPKSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAGRPLAFYAYGIAQC 246
Query: 241 RGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYK 300
+ ++ + L W ++G I + + + ++ + Y++I +R +L EIDG+V K
Sbjct: 247 EPNHGLTTMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPSLQVEIDGMVVK 306
Query: 301 INCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDG 360
++ L Q++LGF SR PR+A AYKF ++ ALT ++ I+ Q+GRTG +TPVA L PV + G
Sbjct: 307 VDDLKQQQQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGG 366
Query: 361 ITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPI 420
+T++ TLHN EI+R ++++GDTV V+R+G+VIPK+ RP ++++ +P CP+
Sbjct: 367 VTVSNVTLHNIGEIHRLDVRVGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPV 426
Query: 421 CNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVV 480
C S ++ E +ARCSG + C AQR ++HF SRKAM+I GLG + +E L+ +++
Sbjct: 427 CASPVVMPEGEALARCSGG-LYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLK 485
Query: 481 TAVDLYKI--NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKE 538
D+Y + + + LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+
Sbjct: 486 DVADIYHLHEHRETLLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARM 545
Query: 539 LANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP 598
LAN F+ LE + A E L P +G T + F P + ++ +L GI+W + P
Sbjct: 546 LANTFQTLEALKAANVEVLKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAP 604
Query: 599 NTK-------------------------------GGKVVNFISKNTNYLVKGQKPGKKLE 627
G +V +S T +V G+K G KLE
Sbjct: 605 TAPTRQPLNGESWVLTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLE 664
Query: 628 KAIKLNIKILDEKNFVKIVKGFS 650
KA KL I +++E +F+ ++ +
Sbjct: 665 KATKLGIPVMNETDFLSLMASYG 687
>gi|448236574|ref|YP_007400632.1| NAD-dependent DNA ligase [Geobacillus sp. GHH01]
gi|445205416|gb|AGE20881.1| NAD-dependent DNA ligase [Geobacillus sp. GHH01]
Length = 670
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 254/664 (38%), Positives = 393/664 (59%), Gaps = 45/664 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R EL++ LHR+ YY+ D P + D +YD+L+ EL IEE+YPEL T DS TQ +G
Sbjct: 9 RAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELMAIEEQYPELKTSDSPTQRIGGPP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E + V H MMSL N F + D+ F++R+ E+ Y+ ELK DG+AV++RYE
Sbjct: 69 LEAFRKVTHVVPMMSLANAFDEGDLRDFDRRVRQEVG---EAAYVCELKIDGLAVSVRYE 125
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
GY Q +TRGDG GE+IT N+ I +PL L P LE R E + K F++LN+
Sbjct: 126 DGYFVQGATRGDGTTGEDITENLRTIRSLPLRLK---EPVSLEARGEAFMPKASFLRLNE 182
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G + F NPRNAAAG LRQL+PK+ ++ L F +G+ + + SHSE L++
Sbjct: 183 ERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGI-ESHSEALDYL 241
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
Q +G + E + ++++I F + + KR LPYEIDG+V K++ + Q++LG T+++
Sbjct: 242 QALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQRELGATAKS 301
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + I + +GRTG++TP A+L+PV + G T+ RATLHNE I
Sbjct: 302 PRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATLHNEDFIRE 361
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD V++ ++G++IP++ ++ R D F +P CP C S+++ ++ + RC
Sbjct: 362 KDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVMPTHCPECESELVRLDGEVALRC 421
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+C AQ + L HF+SR AMNI GLG+K++ +L NA +V DLY++ + L+ L
Sbjct: 422 LNP--KCPAQLRERLIHFASRAAMNIEGLGEKVVTQLFNAGLVHDVADLYRLTKEQLIGL 479
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N+L AI+ SK + R ++ LGIR+VG A+ LA +F+ +E + KAT+E+
Sbjct: 480 ERMGEKSATNLLAAIEASKQNSLERLLFGLGIRYVGAKAAQLLAEHFETMERLEKATKEE 539
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI-YWLNNP----------------- 598
L+ +P+IG + I F +QP L+ +LR G+ P
Sbjct: 540 LMAVPEIGEKMADSIIAFFSQPEAAELLHELRLYGVNMAYKGPKRAAEAPADSAFAGKTV 599
Query: 599 ------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
+GG+V +S++T+ ++ G+ G KLEKA +L I+I DE
Sbjct: 600 VLTGKLASMSRNEAKEEIERRGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDES 659
Query: 641 NFVK 644
F++
Sbjct: 660 RFLQ 663
>gi|375133688|ref|YP_004994338.1| DNA ligase [Acinetobacter calcoaceticus PHEA-2]
gi|325121133|gb|ADY80656.1| DNA ligase [Acinetobacter calcoaceticus PHEA-2]
Length = 679
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 259/668 (38%), Positives = 393/668 (58%), Gaps = 38/668 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + + +HN AYY+ D P ISD++YD L +LK +EE+YP+L+ DS T VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDLVQSDSPTTKVGGQA 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE
Sbjct: 69 LSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKY--PPELLEVRCEVLIYKKDFIKL 194
G L + TRGDG GE+IT N+ I +P VL+ + P LLEVR EVL+ K F KL
Sbjct: 128 NGLLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPHLLEVRGEVLMPKSGFEKL 187
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N + G K F NPRNAAAG LRQL+P I + L F+A+G+ + + ++ + L
Sbjct: 188 NAEQEAKGDKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMHDSLQ 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
W K+G I + + + ++ + Y++I +R +L EIDG+V K++ L Q++LGF S
Sbjct: 248 WLTKLGFEIAERQYLCNSIQEVQQRYEQIQQERSDLQVEIDGMVVKVDDLKQQQQLGFLS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R PR+A AYKF ++ ALT + I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI
Sbjct: 308 REPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEI 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
+R ++++GDTV V+R+G+VIPK+ RP D++I +P CP+C S ++ E +A
Sbjct: 368 HRLDVRVGDTVSVYRTGDVIPKVEKVWPEFRPVDAEIVHLPENCPVCASPVVMPEGEALA 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKN 492
RCSG + C AQR ++HF SRKA++I GLG + +E L++ +++ D+Y + + +
Sbjct: 428 RCSGG-LYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHLHEHRET 486
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A
Sbjct: 487 LLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA 546
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
E L P +G T + F P + ++ +L GI+W + P
Sbjct: 547 DVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWV 605
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G +V +S T +V G+K G KLEKA KL I +++E +
Sbjct: 606 LTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAVMNETD 665
Query: 642 FVKIVKGF 649
F+ ++ +
Sbjct: 666 FLSLMASY 673
>gi|423202535|ref|ZP_17189114.1| DNA ligase [Aeromonas veronii AER39]
gi|404614731|gb|EKB11710.1| DNA ligase [Aeromonas veronii AER39]
Length = 668
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 265/670 (39%), Positives = 386/670 (57%), Gaps = 34/670 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S + R +L + L + YY+ DNP + D +YD+L+ EL +E ++PEL T S +
Sbjct: 1 MSDILSRHRQLCELLTEYGHQYYVLDNPTVPDAEYDRLMRELIALEAEHPELKTPASPSV 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + V H M+SLDN FS E+++ F +R+++ LK E+ E K DG+A
Sbjct: 61 RVGGQPLTAFRQVRHEIPMLSLDNVFSSEELLAFEQRMSDRLKREVRFEFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L Y G L QA+TRGDG GE IT N+ I IPL L PE LEVR EV + K
Sbjct: 121 VSLLYVDGQLVQAATRGDGATGEEITENVRTIKAIPLALRGTGWPERLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F +N G K F NPRNAAAG LRQL+ +I ++ L F+A+GVG + SH
Sbjct: 181 FEAMNAKALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYGVGVGGELLG-DSHF 239
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
LN + GL + E + G F+ I +R LPYEIDGVVYK++ ++ Q++L
Sbjct: 240 GRLNQLKAWGLPLSPEVKLKEGAAGCQAFHDDILARRGELPYEIDGVVYKVDAIALQEEL 299
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A A+KF ++E +T+++ + Q+GRTG +TPVA LKPV + G+T++ ATLHN
Sbjct: 300 GFVARAPRWATAHKFPAQEEMTELENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHN 359
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + IGDTV+V R+G+VIP+I + + + RP D++ P CP+C S + +E
Sbjct: 360 ADEIERLGVMIGDTVIVRRAGDVIPQIVAVVEAQRPVDAREILFPTECPVCGSAVERLEG 419
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ARCSG C AQRK ++HF++R+AM++ GLG K++E+LV+ +V T DL+ +N
Sbjct: 420 EAVARCSGGLF-CEAQRKEAIKHFAARRAMDVDGLGDKIVEQLVDKGLVKTPADLFSLNA 478
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ AI ++ TT RF++ALGIR VGE TA LAN+F L+ +
Sbjct: 479 IQLAGLERMGQKSALNLVAAIDAARSTTLPRFLFALGIREVGEATALNLANHFLTLDALR 538
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
A+ EQLL + +G K F+ QP + ++ L GI+W
Sbjct: 539 AASVEQLLEVADVGDVVAKHVYYFLRQPHNVEVLEALLAAGIHWPAIEKKEAAEQPFAGK 598
Query: 595 ----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
L+ + K G KV +S T+ LV G+ G KL KA +L I +
Sbjct: 599 TFVLTGTLTTLSRNDAKAALQALGAKVAGSVSAKTDVLVAGEAAGSKLTKAQELGITVWT 658
Query: 639 EKNFVKIVKG 648
E+ + ++G
Sbjct: 659 EEELQQALQG 668
>gi|121998657|ref|YP_001003444.1| NAD-dependent DNA ligase [Halorhodospira halophila SL1]
gi|166215780|sp|A1WY80.1|DNLJ_HALHL RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|121590062|gb|ABM62642.1| DNA ligase, NAD-dependent [Halorhodospira halophila SL1]
Length = 711
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 252/698 (36%), Positives = 395/698 (56%), Gaps = 69/698 (9%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ +L+ E+ H+ YY+ D P ISD +YD L EL+++E YP+L++ DS TQ V
Sbjct: 14 RMAQLRGEISEHDYHYYVLDRPTISDAEYDALFRELQRLEAAYPDLVSSDSPTQRVAGTA 73
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E + V H M+SLDN F +D++ F++RI + L + ++ Y E K DGI+++L Y+
Sbjct: 74 QEGFEAVVHDTPMLSLDNAFEADDLVDFDRRIRDRLGVA-SVVYTGEPKLDGISLSLTYQ 132
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +A TRGDG+ GE++T N+ + +PL L P LEVR EV+I K+DF +LN+
Sbjct: 133 DGELVRAGTRGDGHTGEDVTANVRTLRSVPLRLRGDGYPGRLEVRGEVVIRKEDFERLNQ 192
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G + F NPRNAAAG LRQL+P+I + L F GVG+ + + SH ++L
Sbjct: 193 ARLDAGERPFANPRNAAAGSLRQLDPRITARRPLTLFTFGVGDPLALGV-ESHWQVLECL 251
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
G L GV+ + ++ +R LP+EIDG V+K++ L+ +++LGFT+RA
Sbjct: 252 AGWGFRTTAPLEHLEGVSACQAYRDRLIEERDALPFEIDGAVFKVDDLAVREQLGFTARA 311
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+ALA+K ++EA T ++AI +GRTG ITP+A L+PV + G+T+ RA+LHN E+ R
Sbjct: 312 PRWALAFKLPAREATTVVEAIVPSVGRTGKITPLARLQPVEVSGVTVARASLHNADELAR 371
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIP---NICPICNSKIIYIESNLI 433
+++ GDTV+V R+G+VIP+IT +L+ RP ++ ++ CP C S + IE
Sbjct: 372 MDVREGDTVMVRRAGDVIPQITDVVLAKRPEGAQPWRFEERVQACPECGSAVQRIEGEAA 431
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
RC G + C AQR+ + HF+SR+A++I GLG+K++E+LV +VV DL+++ L
Sbjct: 432 HRCVGG-LYCPAQREGAILHFASRRALDIDGLGEKIVEQLVAKGLVVDLADLFRLGHAQL 490
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL------- 546
L+R+ +K A+N+L A+ +++ TT +RF+YALGI HVGE TA+ LA L
Sbjct: 491 AGLERMGDKSADNLLAALDRARSTTLARFLYALGIPHVGEVTARRLAEAAYGLMVAVPRG 550
Query: 547 -------------------ECMFK---ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLI 584
E + + A + L I +G +A F +P +R ++
Sbjct: 551 DRAALRAAAGLDAQTAITSEALLRVMAAPADDLEAIEDVGPVVARAIAGFFAEPHNRQVV 610
Query: 585 SQLRDVGIYWLN-NPNTK---------------------------------GGKVVNFIS 610
L G++W +P + GG+V +S
Sbjct: 611 DHLCAAGVHWPEPDPPEQAESVSSLAGRAFVVTGTLETMTRDEAKAAIEACGGRVTGSVS 670
Query: 611 KNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 648
+ T+YLV G G KL KA +L +++++E +++ G
Sbjct: 671 RKTDYLVAGADAGSKLNKARELGVEVVNESGLRELLAG 708
>gi|226953496|ref|ZP_03823960.1| DNA ligase [Acinetobacter sp. ATCC 27244]
gi|226835781|gb|EEH68164.1| DNA ligase [Acinetobacter sp. ATCC 27244]
Length = 675
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 255/660 (38%), Positives = 390/660 (59%), Gaps = 38/660 (5%)
Query: 27 RHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHT 86
+HN AYY+ D P ISD++YD L +LK +E++YPE + D+ T VG + V H
Sbjct: 19 KHNHAYYVMDQPSISDSEYDHLFHQLKALEQQYPECIQADTPTNKVGGQALSKFESVTHV 78
Query: 87 FKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTR 146
M+SL N F+ E++ F +RI L + ++Y ELK DG+A++L YE G L + TR
Sbjct: 79 VPMLSLGNVFNQEELFAFARRIDERLP-NQKVQYEVELKLDGLAISLWYENGVLVRGVTR 137
Query: 147 GDGNIGENITTNIHIIHKIPLVLNIKYP--PELLEVRCEVLIYKKDFIKLNKYRYHLGLK 204
GDG GE+IT N+ I +P VL+ + P+LLEVR EVL+ K+ F KLN + G K
Sbjct: 138 GDGETGEDITQNVKTIRNLPKVLSGQSQAIPQLLEVRGEVLMPKQGFEKLNADQAAKGEK 197
Query: 205 KFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSIC 264
F NPRNAAAG LRQL+P I ++ L F+A+G+ + + + ++ + L+W K G I
Sbjct: 198 TFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCQPHHGLATMHDSLHWLTKFGFEIA 257
Query: 265 GEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYK 324
+ + ++ + Y++I +R +L EIDG+V K++ L Q++LGF SR PR+A AYK
Sbjct: 258 ERQYLCESIEEVQQRYEQIQQERPDLNVEIDGMVVKVDDLKQQQQLGFLSREPRWATAYK 317
Query: 325 FLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDT 384
F ++ ALTK++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI+R ++++GDT
Sbjct: 318 FPAQAALTKVENIDWQVGRTGTLTPVARLTPVFVGGVTVSNVTLHNIGEIHRLDVRVGDT 377
Query: 385 VVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECI 444
V V+R+G+VIPK+ RP D++I +P CP+C+S ++ E +ARCSG + C
Sbjct: 378 VSVYRTGDVIPKVEKVWAEFRPTDAEIVHLPTNCPVCDSPVVMPEGEALARCSGG-LYCA 436
Query: 445 AQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF--KNLLRLDRVSNK 502
AQR ++HF SRKA++I GLG + +E L++ +++ D+Y ++ + LL ++++ K
Sbjct: 437 AQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHLHTHREKLLTIEKMGEK 496
Query: 503 LANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPK 562
N++ AI SK TT +RFIY LGIR VGETTA+ LAN F+ L+ + A E L P
Sbjct: 497 SVQNLIDAIDASKKTTLARFIYGLGIRGVGETTARMLANTFQTLDALKAADVESLKKTPD 556
Query: 563 IGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------------- 601
+G T + F P + ++ +L GI+W + P
Sbjct: 557 VGDITAEWIADFFQAPHNIEVLDRLMAAGIHW-DAPTAPTRQPLNGESWVVTGTLESMGR 615
Query: 602 ----------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGFST 651
G +V +S T +V G+K G KLEKA KL I++++E+ F+ + +
Sbjct: 616 DEATQRLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAQKLEIRVMNEQEFLDFLAQYQA 675
>gi|146329194|ref|YP_001209306.1| NAD-dependent DNA ligase [Dichelobacter nodosus VCS1703A]
gi|166215582|sp|A5EVZ5.1|DNLJ_DICNV RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|146232664|gb|ABQ13642.1| DNA ligase, NAD-dependent [Dichelobacter nodosus VCS1703A]
Length = 678
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 252/665 (37%), Positives = 388/665 (58%), Gaps = 33/665 (4%)
Query: 10 NFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLT 69
N S ++ + L++ + H AYY+ + P I+D+++D L+ +L+ +E + DS T
Sbjct: 4 NSSLIAAELEALRQTIRAHEYAYYVLEAPNIADSEFDALMQKLRALEAASGLPIPADSPT 63
Query: 70 QHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGI 129
Q VG + V H M+SLDN F+ ++ F +R+ +L T I IAE KFDG+
Sbjct: 64 QRVGGKADNRFRNVAHHIAMLSLDNVFNADEFADFYRRLQEQLSPTTAISLIAEPKFDGL 123
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
A+NLRYE G L++ASTRGDG GE++T N+ I IPL LN PP+++E+R E+ + KK
Sbjct: 124 AINLRYENGILQRASTRGDGITGEDVTQNVRTISTIPLRLNTHTPPDVIEIRGEIYMPKK 183
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
F LN+ G K F NPRNAA+G LRQL+P+I + L FFA+G GE+ +P ++
Sbjct: 184 AFYALNEQAAANGEKIFANPRNAASGSLRQLDPRITARRQLAFFAYGYGEITNYQLPETY 243
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
LL Y+ + +C + + + + + Y++ +R LP++IDGVV+K+N + Q++
Sbjct: 244 EALLEQYRAWHIPVCSLHQKAATLPEALAAYQQFAKQREQLPFDIDGVVFKVNRFADQQR 303
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
GF +RAPR+A+A+KF + E T+I+AI +Q+GRTG +TPVA L+PV I G+ + A+LH
Sbjct: 304 AGFLARAPRWAIAWKFPALEKTTRIEAIELQVGRTGAVTPVARLQPVTIAGVVVRSASLH 363
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
N EI RK+I++GDT+ + R+G+VIP++ S +L R D+ +F +P CP+C + I+ E
Sbjct: 364 NAREIARKDIRVGDTIFIRRAGDVIPEVVSVVLEKRLPDAPVFAMPEHCPVCAAAIVQNE 423
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
+ARCSG + C AQR A L HF+SR+A++I GLG+K+I++LV V T DL+ +
Sbjct: 424 DEAVARCSGG-LHCPAQRVAALIHFASREALDIRGLGEKLIQQLVAQEFVRTPADLFCLT 482
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
+ L R+ K A+N++ AI +K TT +RFIYALGIR VG A+ LA +F +L
Sbjct: 483 ADDWASLPRMGKKSAHNVMTAIDAAKKTTLARFIYALGIRGVGSVNAQALAAHFGDLAAF 542
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------LNNP--- 598
A L I IG F +R +I+ + G++W ++ P
Sbjct: 543 MAADRAALQEIEGIGDVVAADIEHFFADEDNRAVIAAIVAAGVHWSTELTKKIIDAPLLG 602
Query: 599 ---------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
T G KV + +S+ T++L+ G G KL +A ++ I+
Sbjct: 603 KTVVITGTLPSLSRAEAQKRLETLGAKVTSQVSRQTDFLLLGADAGSKLARAQAFSVPII 662
Query: 638 DEKNF 642
DE
Sbjct: 663 DEAQL 667
>gi|374314057|ref|YP_005060486.1| DNA ligase [Serratia symbiotica str. 'Cinara cedri']
gi|363988283|gb|AEW44474.1| DNA ligase [Serratia symbiotica str. 'Cinara cedri']
Length = 678
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 266/669 (39%), Positives = 395/669 (59%), Gaps = 37/669 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y+ D P ISD +YD L+ +L+ +E KYP L+T DS TQ VG V
Sbjct: 7 QINQLRALLRYHEYQYHALDEPTISDAEYDLLMCQLRALEGKYPTLITIDSPTQRVGAVP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
K V H M+SLDN F + F KR+ N LK++ + + ELK DG+AV+L YE
Sbjct: 67 LPAFKQVRHEVPMLSLDNVFDKAGFLAFYKRVQNRLKISDPLTFCCELKLDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
L+ A+TRGDG GENIT N+ I IP+ L P LEVR E+ + + F ++N
Sbjct: 127 DSELRHAATRGDGTTGENITFNVRTIGAIPMRLIGINIPRRLEVRGEIFMSRDGFEQINA 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
K FTNPRNAAAG +RQL+P+I N+ L F HGVG L G + SH E L +
Sbjct: 187 EARCQNGKIFTNPRNAAAGSMRQLDPRITANRPLKFLCHGVGLLDGGKLSRSHFERLIQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
GL I E + +G +++++FY ++ R +L ++IDG+V KI+ + Q+KLG +RA
Sbjct: 247 SAWGLPISTEARLCTGSDEVLDFYYQVKQDRAHLSFDIDGLVVKIDDICLQEKLGCIARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+ A+KF ++E +T ++AI Q+GRTG ITPVA L+PVL+ G+TI+ ATLHN +E+ R
Sbjct: 307 PRWVTAFKFPAREHVTLLRAIEFQVGRTGAITPVARLEPVLVSGVTISNATLHNANEVER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
+ IGDTV+V R+G+VIP++ + RP D+ P CP+CNS I ++ +ARC
Sbjct: 367 LGLHIGDTVIVRRAGDVIPQVVGVLKERRPQDACAVFFPKYCPVCNSDIKRVDGVALARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQ K L+HF SR+A+++ G+G K+IE+LV V DL++I+ + L +L
Sbjct: 427 TGE-MSCAAQLKEALKHFVSRRALDVDGIGDKIIEQLVERKYVKNPADLFRISIEMLSKL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DRV +K A I+ A++KSK TTF+RF+YALGI VGE A LA +F +L ++ A +
Sbjct: 486 DRVGSKSAQKIINALEKSKHTTFARFLYALGIPKVGEAIAANLATHFHSLNKLYTADIVE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQL--RDVGIYW----------LNNP------ 598
L +P IG + F+++ +++ +IS+L ++GI W + NP
Sbjct: 546 LKKVPDIGEVIAQHVRHFLDEKINQKVISELVGTEIGINWTLPLQIVAEEIYNPVFGKNV 605
Query: 599 ------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
G K+ + +SK T+ ++ G+ K KA +L I+I++EK
Sbjct: 606 VLTGSFSQLSRNDAIDCLRVLGAKISSSVSKKTDLVISGKATSLKTMKAKELGIEIIEEK 665
Query: 641 NFVKIVKGF 649
F +K F
Sbjct: 666 KFFNQIKYF 674
>gi|404493859|ref|YP_006717965.1| NAD-dependent DNA ligase [Pelobacter carbinolicus DSM 2380]
gi|123756590|sp|Q3A2F5.1|DNLJ_PELCD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|77545890|gb|ABA89452.1| DNA ligase, NAD-dependent [Pelobacter carbinolicus DSM 2380]
Length = 671
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 258/661 (39%), Positives = 391/661 (59%), Gaps = 35/661 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R +L ELHRH+ YY YD P I+D +YD+L EL ++E+ YPEL+T S + VG
Sbjct: 9 RYQQLCDELHRHSRLYYTYDRPEITDAEYDRLFRELLELEKAYPELVTAASPSLRVGASP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H+ M+SL+N +++++ F+ RI L + Y+ ELK DG+AV L Y
Sbjct: 69 LSQFTPVPHSRPMLSLENALTEDELYDFDARIRKLLASDAPVRYVCELKMDGVAVELVYR 128
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L STRGDG GE IT N+ I IPLVL+ + P LLEVR EV I DF KLN
Sbjct: 129 DGILSVGSTRGDGTTGEGITENLRTIPSIPLVLSGEAPA-LLEVRGEVYIDLDDFQKLNH 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R GL+ F NPRNAAAG LRQL+ + + L F +G+G+L G + P+SH LL
Sbjct: 188 EREEEGLQVFANPRNAAAGSLRQLDSAVTAKRPLKIFCYGIGQLSGEH-PASHHSLLKCM 246
Query: 257 QKIGLSICGEYS-VLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ GL + E+S L G+ ++ ++++++ +R LPYEIDG+V K++ L+ Q++LG +R
Sbjct: 247 HRWGLRVNLEHSRTLEGIEQVTDYFRQLQQRRDELPYEIDGMVVKVDDLALQRELGEKTR 306
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
PR+A+A KF ++A+T ++ I +Q+GRTG ITPVA LKPV + G+T++RA+LHN EI
Sbjct: 307 TPRWAIACKFPPRQAVTVVEDIVLQVGRTGAITPVAQLKPVEVSGVTVSRASLHNWDEIA 366
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
R ++ IGDTVVV R+G+VIP + + R + +P CP C ++ +E ++ R
Sbjct: 367 RLDVLIGDTVVVERAGDVIPDVVKVLTEHRNGQERSVPLPQSCPACGGPVVKLEGEVVPR 426
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C + C A+ + ++HF +R+AM+I GLG++ IE+L+ ++ + DLY + ++LL
Sbjct: 427 C--QEMSCPARLRESIKHFVARRAMDIDGLGERTIEQLLKRELIKSVADLYHLTKEDLLL 484
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
+R+++K A +L AI SK RF++ALGIRHVGE A LA F +L+ + AT E
Sbjct: 485 CERLADKSAEKLLTAIAASKTRPLGRFLFALGIRHVGEHLASLLARQFGSLDALSHATRE 544
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI-----------------YWLNNP 598
+LL I +IG + F + +R +++ L+ G+ +
Sbjct: 545 ELLAIHEIGPQVADSVTDFFAKSRNREILAALQRAGVAPQAEEKRSGGPLTGKSFVFTGS 604
Query: 599 NTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKI 645
T+ GG+ +SK T+ +V G+ G KLEKA +LNI+IL E+ F+++
Sbjct: 605 LTRFSRKQAQEMVERLGGRASGSVSKKTDCVVAGEAAGSKLEKARQLNIQILSEEEFLQM 664
Query: 646 V 646
+
Sbjct: 665 I 665
>gi|293609092|ref|ZP_06691395.1| DNA ligase [Acinetobacter sp. SH024]
gi|292829665|gb|EFF88027.1| DNA ligase [Acinetobacter sp. SH024]
Length = 679
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 260/668 (38%), Positives = 393/668 (58%), Gaps = 38/668 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + + +HN AYY+ D P ISD++YD L +LK +EE+YP+L+ DS T VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDLVQSDSPTTKVGGQA 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ ED+ F +R+ L + I+Y ELK DG+A++L YE
Sbjct: 69 LSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERLP-NQKIQYEVELKLDGLAISLWYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKY--PPELLEVRCEVLIYKKDFIKL 194
G L + TRGDG GE+IT NI I +P VL+ + P LLEVR EVL+ K F KL
Sbjct: 128 NGVLIRGVTRGDGETGEDITQNIKTIRNLPKVLHSDHFEIPRLLEVRGEVLMPKSGFEKL 187
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N + G K F NPRNAAAG LRQL+P I + L F+A+G+ + + ++ + L
Sbjct: 188 NAEQEAKGDKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLTTMHDSLQ 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
W K+G I + + + ++ + Y++I +R +L EIDG+V K++ L Q++LGF S
Sbjct: 248 WLIKLGFEIAERQYLCNSIQEVQQRYEQIQQERSDLQVEIDGMVVKVDDLKQQQQLGFLS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R PR+A AYKF ++ ALT + I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI
Sbjct: 308 REPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEI 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
+R ++++GDTV V+R+G+VIPK+ RP D+++ +P CP+C S ++ E +A
Sbjct: 368 HRLDVRVGDTVSVYRTGDVIPKVEKVWPEFRPVDAEVVHLPENCPVCASPVVMPEGEALA 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKN 492
RCSG + C AQR ++HF SRKA++I GLG + +E L++ +++ D+Y + + +
Sbjct: 428 RCSGG-LYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHLHEHRET 486
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A
Sbjct: 487 LLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA 546
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
E L P +G T + F P + ++ +L GI+W + P
Sbjct: 547 DVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWV 605
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G +V +S T +V G+K G KLEKA KL I +++E +
Sbjct: 606 LTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAVMNETD 665
Query: 642 FVKIVKGF 649
F+ ++ +
Sbjct: 666 FLSLMASY 673
>gi|386287587|ref|ZP_10064759.1| NAD-dependent DNA ligase [gamma proteobacterium BDW918]
gi|385279409|gb|EIF43349.1| NAD-dependent DNA ligase [gamma proteobacterium BDW918]
Length = 675
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 249/663 (37%), Positives = 388/663 (58%), Gaps = 34/663 (5%)
Query: 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG 73
L R+ L+++LH ++ YY+ + I D +YD+L EL++IE +PE + DS +Q VG
Sbjct: 6 LRERLEMLREQLHSYSYHYYVLNESSIPDAEYDRLFAELQEIEAAHPEWHSPDSPSQRVG 65
Query: 74 LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNL 133
V H M+SLDN FS++ ++ F++RI + L + + Y E K DGIA +L
Sbjct: 66 AAPLAAFSQVRHETPMLSLDNVFSEQALLDFDQRIKSRLNDSAELRYACEPKLDGIAASL 125
Query: 134 RYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIK 193
Y G L + +TRGDG +GE+IT N+ I IPL L P+ LEVR E+ + + F +
Sbjct: 126 LYVDGVLVRGATRGDGRVGEDITQNVKTIASIPLKLRGSGWPDELEVRGEIYMPRSGFAR 185
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253
+N+ + K F NPRNAAAG LRQL+ KI ++ L +G+ + G SHSE L
Sbjct: 186 INELARNSEGKVFVNPRNAAAGSLRQLDSKITASRPLEMSCYGIAQGDGEAWFHSHSEGL 245
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
+ G + E V+ ++ +E+Y+ + +R +L Y+IDG+V+K++ L+ Q KLGF
Sbjct: 246 ARLRDWGFLVSPELRVVDSIDGCLEYYQDLLARRDSLAYDIDGIVFKVDSLALQDKLGFV 305
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
SRAPR+A+A+KF ++E +T+++ + Q+GRTG +TPVA L+PV + G+T++ A+LHN E
Sbjct: 306 SRAPRWAIAHKFPAQEEITQLRDVEFQVGRTGAVTPVAKLEPVFVGGVTVSNASLHNFDE 365
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
+ R N+ IGD VVV R+G+VIP+I + RP +++ P CP+C+S + +
Sbjct: 366 VARLNVMIGDYVVVRRAGDVIPQIVQVVAERRPAEARAIVAPVRCPVCDSALERAPGEAV 425
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
RC+G + C AQRK ++HF+SRKAM+I GLG K++E+LV+A ++ T DL+ + L
Sbjct: 426 LRCTGGLV-CGAQRKEAIKHFASRKAMDIEGLGDKLVEQLVDAGLIETVADLFVLTLDAL 484
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
LDR+ K A N+L A++KS+ TT RF+Y+LGIR VGE TA LAN+F L + A+
Sbjct: 485 AGLDRMGQKSAENVLAALEKSRTTTLPRFLYSLGIREVGEATALNLANHFGELPALIAAS 544
Query: 554 EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGG---------- 603
EE+LL++ +G F++ +R +I+ L + G++W P GG
Sbjct: 545 EEELLSVADVGPIVASHIHAFLSSDYNREVINLLLERGVHW-PAPRQAGGEQPLAGQTWV 603
Query: 604 ----------------------KVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
KV +S T+ + G G KL KA L +K+++E+
Sbjct: 604 LTGNLESMTRGDAKEKLQALGAKVAGSVSAKTDCVAAGASAGSKLAKAEALGVKVINEQE 663
Query: 642 FVK 644
++
Sbjct: 664 LLQ 666
>gi|403050764|ref|ZP_10905248.1| NAD-dependent DNA ligase [Acinetobacter bereziniae LMG 1003]
Length = 676
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 270/672 (40%), Positives = 395/672 (58%), Gaps = 43/672 (6%)
Query: 18 VTELKKELH---RHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGL 74
VT++++ + +HN AYY+ D P I D++YDQL +LK +E++YP+L+ DS VG
Sbjct: 7 VTQMRQLIQLIAKHNHAYYVMDQPSIEDSEYDQLFHQLKALEQQYPDLVQADSPVNKVG- 65
Query: 75 VGGENSKY--VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
G +K+ + HT M+SL N F+ E++ F +RI L + I+Y ELKFDG+A++
Sbjct: 66 -GKPLAKFETITHTVPMLSLGNVFNQEELFAFARRIEERLP-NQKIQYDVELKFDGLAIS 123
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIK--YPPELLEVRCEVLIYKKD 190
L YE G L + TRGDG GE IT N+ I +P VL+ P LLEVR EVL+ K
Sbjct: 124 LWYENGVLTRGVTRGDGETGEVITQNVKTIRNLPKVLSSDKVAVPRLLEVRGEVLMPKAG 183
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F +LN G K F NPRNAAAG LRQL+P I ++ L F+A+G+ + + SS S
Sbjct: 184 FERLNAENEAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCEPNHGLSSMS 243
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
L W G ++ + + + ++ E Y++IN +R NL EIDG+V K++ L Q+KL
Sbjct: 244 ASLEWLTNFGFAVGERHFICDSIQEVQEKYQQINQERPNLAVEIDGMVIKVDDLQQQQKL 303
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF SR PR+A AYKF + ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN
Sbjct: 304 GFLSREPRWATAYKFPAVAALTTVENIDWQVGRTGTLTPVARLNPVAVGGVTVSNVTLHN 363
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI+R +++IGDTV V+RSG+VIPK+ L RP+D +P CP+C+S ++ E
Sbjct: 364 IGEIHRLDVRIGDTVSVYRSGDVIPKVEKVWLEFRPDDVVEVHLPENCPVCSSPVVMPEG 423
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI-- 488
+ARCSG + C AQR ++HF SRKAM+I GLG + +E L++ +++ D+Y +
Sbjct: 424 EALARCSGG-LYCSAQRIEAIRHFVSRKAMDIEGLGDRWVESLLHLDLLKDVADIYHLHE 482
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
+ + LL ++++ K N+L AI+ SK TT + FIYALGIR VGETTA+ LAN F+ +
Sbjct: 483 HREQLLTIEKMGEKSVQNLLDAIENSKKTTLAAFIYALGIRGVGETTARMLANTFQTFDA 542
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP 598
+ A E L P +G T + + F + +I +L GI+W LN
Sbjct: 543 IRHADLEALKKTPDVGGITAEWIVDFFQASHNLEVIDRLLAAGIHWDAPIAPTRQPLNGE 602
Query: 599 N--------------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
+ G +V +S T +V G+K G KLEKA KL I +LD
Sbjct: 603 SWVITGTLATMGRDDATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAEKLGIPVLD 662
Query: 639 EKNFVKIVKGFS 650
E+ F+ ++ +
Sbjct: 663 EQAFLALMADYG 674
>gi|114565926|ref|YP_753080.1| DNA ligase (NAD(+)) [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|122318951|sp|Q0AZZ5.1|DNLJ_SYNWW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|114336861|gb|ABI67709.1| DNA ligase (NAD(+)) [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 661
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 256/665 (38%), Positives = 406/665 (61%), Gaps = 39/665 (5%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
++S R+ EL++E+ +H+ YY+ D P+ISD+ YD+L+ ELKK+EE+YP+ +T DS TQ V
Sbjct: 2 EVSSRIKELREEMQKHDYHYYILDAPLISDSGYDRLMQELKKLEEEYPQYITADSPTQRV 61
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
E V H F ++SLDN FS +D++ F++RI ++ + + Y+AELK DG+++
Sbjct: 62 AGKASEKFSPVRHRFPLLSLDNAFSYQDLLEFDRRIG---RVARTLSYMAELKIDGVSIA 118
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
L YE G L A+TRGDG +GE++T NI I IPL L P LEVR EV + K++FI
Sbjct: 119 LVYENGVLLNAATRGDGLVGEDVTANIRTIKTIPLRLRHSLP--RLEVRGEVFMPKQEFI 176
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
+LN+ + G + F NPRNAAAG LRQL+P++ + L F + + + G + + E
Sbjct: 177 RLNEEKEEKGERVFANPRNAAAGSLRQLDPRVTAGRALSAFVYDIIYMEGQTL-AEQQEA 235
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
++ Q++GL + E + +N ++ F ++ KR LPYEIDGVV K+N L+ +++LG
Sbjct: 236 WHFMQELGLPVNPEVRFCADINAVLAFTEEYAEKRHELPYEIDGVVVKLNTLAEREELGA 295
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
T+R+PR+A+AYKF ++E T++ + I +GRTGII P ALL+PV + G T++RA++HN
Sbjct: 296 TARSPRWAMAYKFPAEEKETRLLGVEINVGRTGIIAPTALLEPVFLAGTTVSRASMHNFD 355
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
I K+++IGD V++H++G++IP+I +S+ R + ++ P CP C+SK+ +
Sbjct: 356 LIKEKDLRIGDMVLLHKAGDIIPEIIASLPEKRSGEERVITPPENCPACDSKVARFAGEV 415
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
RC I C A+ K L F+SR AM+I GLG +IE+LVN ++V DLY++ +
Sbjct: 416 AYRCEN--INCPARLKESLIFFASRGAMDIDGLGSAVIEQLVNKDMVKRIDDLYRLREEE 473
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
+ L+R+ K A N++ AI +SK SR + ALGIRH+G +AK L+ + +++ +K
Sbjct: 474 ITALERMGPKSAANLIKAINESKSRPLSRLLTALGIRHIGARSAKILSRHIHDIDDFYKL 533
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP-------------- 598
E L +IP+IG ++ + F +P +R I L+D+G+
Sbjct: 534 GVENLTSIPEIGPKMAESMVNFFAEPRNRETIEDLKDLGVNTREEAIEAGEQLLQGKTFV 593
Query: 599 -----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
++GGKV + +SK T+Y+V G PG KL+KA++L + ILDE
Sbjct: 594 LTGTLPSLTRQQASEMIESRGGKVSSSVSKKTSYVVAGDDPGSKLDKALQLELTILDEAG 653
Query: 642 FVKIV 646
F+ ++
Sbjct: 654 FLNLL 658
>gi|358012596|ref|ZP_09144406.1| DNA ligase, NAD-dependent [Acinetobacter sp. P8-3-8]
Length = 676
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 268/670 (40%), Positives = 396/670 (59%), Gaps = 40/670 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + + +HN AYY+ D P I D++YDQL +LK +E+++P+ + DS T VG G
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTIEDSEYDQLFHQLKALEQQHPDSVQADSPTNKVG--G 66
Query: 77 GENSKY--VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLR 134
SK+ + HT M+SL N F+ E++ F +RI L + IEY ELKFDG+A++L
Sbjct: 67 KALSKFETITHTVPMLSLGNVFNQEELFAFARRIEERLP-NQKIEYDVELKFDGLAISLW 125
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIK--YPPELLEVRCEVLIYKKDFI 192
YE G L + TRGDG GE IT N+ I +P VL+ P LLEVR EVL+ K F
Sbjct: 126 YENGELIRGVTRGDGETGEVITQNVKTIRNLPKVLSSDKVEVPRLLEVRGEVLMPKAGFE 185
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
KLN G K F NPRNAAAG LRQL+P I ++ L F+A+G+ + + +S S
Sbjct: 186 KLNLENEGKGEKTFANPRNAAAGSLRQLDPSIAASRPLAFYAYGIAQCEPNHGITSMSAS 245
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
L W G ++ + + + + E Y++IN +R +L EIDG+V K++ L Q+KLGF
Sbjct: 246 LEWLTNFGFAVGERHFICDSIQDVQEKYEQINRERPDLAVEIDGMVVKVDDLQQQQKLGF 305
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
SR PR+A AYKF + ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN
Sbjct: 306 LSREPRWATAYKFPAVAALTTVENIDWQVGRTGTLTPVARLNPVAVGGVTVSNVTLHNIG 365
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
EI+R ++++GDTV V+RSG+VIPK+ L RPND +P CP+C+S ++ E
Sbjct: 366 EIHRLDVRVGDTVSVYRSGDVIPKVEKVWLEFRPNDVTEVHLPENCPVCSSPVVMPEGEA 425
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NF 490
+ARCSG + C AQR ++HF SRKA++I GLG + +E L++ +++ D+Y + +
Sbjct: 426 LARCSGG-LYCSAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHLHEHR 484
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
+ LL ++++ K N+ AI+ SK TT + FIYALGIR VGETTA+ LAN F+ L+ +
Sbjct: 485 EQLLTIEKMGEKSVQNLFDAIENSKKTTLAAFIYALGIRGVGETTARMLANSFQTLDAIR 544
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNPN- 599
A E L P +G T + + F P + +I +L GI+W LN +
Sbjct: 545 HADLEALKKTPDVGDITAEWIVDFFQAPHNLEVIDRLLAAGIHWDAPIAPTRQPLNGESW 604
Query: 600 -------------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
G +V +S T +V G+K G KLEKA KL + +LDE+
Sbjct: 605 VITGTLATMGRDDATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAEKLGVNVLDEQ 664
Query: 641 NFVKIVKGFS 650
F+++++ +
Sbjct: 665 AFLQLMQEYG 674
>gi|329120426|ref|ZP_08249092.1| NAD-dependent DNA ligase LigA [Neisseria bacilliformis ATCC
BAA-1200]
gi|327462110|gb|EGF08438.1| NAD-dependent DNA ligase LigA [Neisseria bacilliformis ATCC
BAA-1200]
Length = 887
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 262/658 (39%), Positives = 377/658 (57%), Gaps = 62/658 (9%)
Query: 1 MSFHAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYP 60
++F ++N + ++ EL L+R+ YY D P + D +YD+L EL+ +E +P
Sbjct: 56 LTFQIDTRMN--DPAAKIRELTDLLNRYGYEYYTLDAPSVPDAEYDRLFRELEALEAAHP 113
Query: 61 ELLTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDED---------VIIFNKRITNE 111
EL DS TQ VG V H M+SL N FS +D + F++R+
Sbjct: 114 ELKLPDSPTQRVGGAPLAGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMTAFDERVRGG 173
Query: 112 LKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI 171
L N +Y+ E KFDG+AV+L Y G L+QA+TRGDG GE++T NI + IPL L+
Sbjct: 174 LG-GANPQYVIEPKFDGLAVSLLYRDGVLQQAATRGDGASGEDVTQNIKTVSNIPLRLHG 232
Query: 172 KYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILH 231
P L+E+R EVL+ K DF LN+ + G K F NPRNAAAG LRQL+ +I + LH
Sbjct: 233 ADTPALIEIRGEVLMLKADFAALNRRQEEAGQKPFANPRNAAAGSLRQLDSRITAQRKLH 292
Query: 232 FFAHGVGELRGMNMPSSHSELLNWYQKIGLSIC-GEYSVLSGVNKLIEFYKKINIKRFNL 290
FF + + G SH + L + +G S+ G Y + +++ FY+++ KR L
Sbjct: 293 FFPYSIARQEGGFAAESHIQELEYCGTLGFSLPEGNYGCFGNIAEVLAFYEQMQQKRPAL 352
Query: 291 PYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPV 350
PYEIDG+V K+N L+ Q++LGF SRAPR+A+A+KF ++EALT ++AI++QIGRTG +TPV
Sbjct: 353 PYEIDGMVVKVNSLAQQRELGFISRAPRWAIAHKFPAEEALTTVEAIDVQIGRTGAVTPV 412
Query: 351 ALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRP---- 406
A L+PV + G+T+T ATLHN+ E+ RK++++GDTVVV R+G+VIP++ +L RP
Sbjct: 413 ARLQPVFVGGVTVTNATLHNQDEVSRKDVRVGDTVVVRRAGDVIPEVVRVVLERRPMKAA 472
Query: 407 ---NDSKI-------------------FKIPNICPICNSKIIYIESNLIARCSGSWIECI 444
ND+ +++P CPIC S I E +ARCSG + C
Sbjct: 473 TVSNDTNAQNDLFEQRPSEKTQPAYPPYRLPENCPICRSPIEREEGEAVARCSGGML-CS 531
Query: 445 AQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL-------- 496
AQR GL HF+SRKAM+I GLG+K IE+LV ++V DLY+++ L ++
Sbjct: 532 AQRAQGLIHFASRKAMDIDGLGQKQIEQLVAQDLVRHFADLYRLDVPVLQKMKETAEQSE 591
Query: 497 ---DRVSN-----------KLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY 542
D +SN K A NI+ I+ SK +RF++ALGIRHVGE TAK LA
Sbjct: 592 NVSDGLSNTSAAKPKKQPTKWAENIIAGIENSKTPELARFLFALGIRHVGERTAKTLAQA 651
Query: 543 FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNT 600
F L+ + +A E L +P IG ++ F Q + +I +L G+ P T
Sbjct: 652 FGTLDTVRRAPEPVLACLPDIGEVVARSVAHFFAQDAQQAMIDELLAAGVAPKTQPAT 709
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
GGKV +SK T+Y++ G+ G KLEKA+ L + +L E+ + ++
Sbjct: 840 GGKVSGSVSKKTDYVIAGEAAGSKLEKALALGVAVLGEEELLAML 884
>gi|375007157|ref|YP_004980789.1| DNA ligase [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359286005|gb|AEV17689.1| DNA ligase [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 670
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 254/664 (38%), Positives = 392/664 (59%), Gaps = 45/664 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R EL++ LHR+ YY+ D P + D +YD+L+ EL IEE+YPEL T DS TQ +G
Sbjct: 9 RAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELMAIEEQYPELKTSDSPTQRIGGPP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E + V H MMSL N F + D+ F++R+ E+ Y+ ELK DG+AV++RYE
Sbjct: 69 LEAFRKVTHVVPMMSLANAFDEGDLRDFDRRVRQEVG---EAAYVCELKIDGLAVSVRYE 125
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
GY Q +TRGDG GE+IT N+ I +PL L P LE R E + K F++LN+
Sbjct: 126 DGYFVQGATRGDGTTGEDITENLRTIRSLPLRLK---EPVSLEARGEAFMPKASFLRLNE 182
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G + F NPRNAAAG LRQL+PK+ ++ L F +G+ + + SHSE L++
Sbjct: 183 ERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGI-ESHSEALDYL 241
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
Q +G + E + ++++I F + + KR LPYEIDG+V K++ + Q++LG T+++
Sbjct: 242 QALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQRELGATAKS 301
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + I + +GRTG++TP A+L+PV + G T+ RATLHNE I
Sbjct: 302 PRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATLHNEDFIRE 361
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD V++ ++G++IP++ ++ R D F +P CP C S+++ ++ + RC
Sbjct: 362 KDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVMPTHCPECESELVRLDGEVALRC 421
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+C AQ + L HF+SR AMNI GLG+K++ +L NA +V DLY++ + L+ L
Sbjct: 422 LNP--KCPAQLRERLIHFASRAAMNIEGLGEKVVTQLFNAGLVHDVADLYRLTKEQLIGL 479
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N+L AI+ SK + R ++ LGIR+VG A+ LA +F+ +E + KAT+E+
Sbjct: 480 ERMGEKSATNLLAAIEASKQNSLERLLFGLGIRYVGAKAAQLLAEHFETMERLEKATKEE 539
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI--------YWLNNPNTK------- 601
L+ +P+IG + I F +QP L+ +LR G+ P
Sbjct: 540 LMAVPEIGEKMADSIIAFFSQPEAAELLHELRLYGVNMAYKGLKRAAEAPADSAFAGKTV 599
Query: 602 ---------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
GG+V +S++T+ ++ G+ G KLEKA +L I+I DE
Sbjct: 600 VLTGKLASMSRNEAKEEIERLGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDES 659
Query: 641 NFVK 644
F++
Sbjct: 660 RFLQ 663
>gi|392962771|ref|ZP_10328200.1| DNA ligase [Pelosinus fermentans DSM 17108]
gi|421053165|ref|ZP_15516147.1| DNA ligase, NAD-dependent [Pelosinus fermentans B4]
gi|421062582|ref|ZP_15524695.1| DNA ligase [Pelosinus fermentans B3]
gi|421067866|ref|ZP_15529285.1| DNA ligase [Pelosinus fermentans A12]
gi|421073849|ref|ZP_15534898.1| DNA ligase [Pelosinus fermentans A11]
gi|392440952|gb|EIW18608.1| DNA ligase [Pelosinus fermentans B3]
gi|392442206|gb|EIW19796.1| DNA ligase, NAD-dependent [Pelosinus fermentans B4]
gi|392443838|gb|EIW21347.1| DNA ligase [Pelosinus fermentans A11]
gi|392446950|gb|EIW24220.1| DNA ligase [Pelosinus fermentans A12]
gi|392452012|gb|EIW28981.1| DNA ligase [Pelosinus fermentans DSM 17108]
Length = 678
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 255/675 (37%), Positives = 403/675 (59%), Gaps = 37/675 (5%)
Query: 6 KKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTK 65
KK + ++ ++ +L+++LH HN YY+ D+P + D ++D L+ L ++E YP+L+T
Sbjct: 3 KKLDDIQEIQNKIIQLREQLHYHNYRYYVLDDPEMGDGEFDLLMRSLIELESSYPQLITA 62
Query: 66 DSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELK 125
DS TQ VG + K V+H M SL N F+ ++++ F+ R+ N L ++IEY+ ELK
Sbjct: 63 DSPTQRVGGMVAGGFKRVNHATPMRSLGNCFAADELLAFHNRVQNGLGEEQDIEYVVELK 122
Query: 126 FDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYP--PELLEVRCE 183
DG+A+NL YE G+L TRGDG GE++TTNI I IPL+L + P LEVR E
Sbjct: 123 IDGLAINLIYENGHLVSGVTRGDGTQGEDVTTNIRTIKSIPLMLRGDHAGIPSFLEVRGE 182
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
+ + +K+F +LN R G NPRNAAAG LRQL+PK+ N+ L F +G+G G+
Sbjct: 183 IYMPRKEFERLNHEREEAGEALLANPRNAAAGSLRQLDPKVTANRALDVFVYGIGTYTGI 242
Query: 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303
+ ++H ++L + ++GL Y + + + +I + KR LPYEIDG+V K+N
Sbjct: 243 EL-TTHGQVLGYLSQLGLKTNPHYQIFNQIEDVIAYCTGFAEKRHELPYEIDGMVIKVND 301
Query: 304 LSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITI 363
LS+Q+ LG+T++ PR+A+AYKF +++A+T ++ I + +GRTG++TP A+L+PV + G T+
Sbjct: 302 LSSQQILGYTAKDPRWAIAYKFPAEQAITVVEDIFVGLGRTGVLTPTAILRPVRVAGSTV 361
Query: 364 TRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNS 423
+RATLHN+ I K+I+IGDTV++H++G VIPK+ + + R F +P CP C
Sbjct: 362 SRATLHNQDYIEEKDIRIGDTVIIHKAGEVIPKVVAVVKEKRTGGEIPFVMPEECPECKG 421
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
K+I E +C+ C A + GL HF SR AMNI GLG ++ LV+ +V
Sbjct: 422 KVIRQEGESAHKCTNPH--CPALFREGLIHFVSRDAMNIDGLGPAVLNALVDTGLVKDVA 479
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
DLY++ + +L + R+ K A N+L AI+ SK SR ++ALGIRHVG A +A +
Sbjct: 480 DLYRLEMEQVLTVPRMGKKSAENLLTAIENSKQAGLSRLLFALGIRHVGVKAAGIVAKRY 539
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI----------- 592
N+E + +A+ E+LL + ++G+ ++ + + + L+++L G+
Sbjct: 540 GNMEDIKQASVEELLELDEVGTKIAESIVAYFAAEENLELVARLETAGLNMTEEKQIITE 599
Query: 593 --------YWLNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIK 631
+ L K GGKV +SK TNY+V G + G KL+KA +
Sbjct: 600 NQLFSGKTFVLTGTLDKMSRNQAADMIQKLGGKVSGSVSKKTNYVVAGTEAGSKLDKAQE 659
Query: 632 LNIKILDEKNFVKIV 646
L I++L+E++F+K+V
Sbjct: 660 LGIEVLEEEDFLKMV 674
>gi|254283004|ref|ZP_04957972.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR51-B]
gi|219679207|gb|EED35556.1| DNA ligase, NAD-dependent [gamma proteobacterium NOR51-B]
Length = 675
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 255/667 (38%), Positives = 380/667 (56%), Gaps = 40/667 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
V EL++ + R + YY D P + D YD L ++E +PEL + DS T+ VG
Sbjct: 9 VAELRERIKRWALEYYQQDAPSVPDADYDAAFRRLHELESAHPELASPDSPTRRVGAQPI 68
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN-IEYIAELKFDGIAVNLRYE 136
+ V H M+SLDN FS +D F++R++ +L KN I+Y E K DGIAV+L YE
Sbjct: 69 AGFEQVTHRLPMLSLDNAFSSDDFDAFDQRVSE--RLGKNAIDYCCEPKLDGIAVSLIYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG +GE+IT N+ I IPL L P++LEVR EV + + F +LN
Sbjct: 127 RGKLTQAATRGDGVVGEDITHNVRTIEAIPLALEGGGFPDVLEVRGEVFMPRVGFERLND 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM--NMPSSHSELLN 254
G K F NPRNAAAG LRQL+P++ + L F + VG G ++ HS ++
Sbjct: 187 RARASGDKLFVNPRNAAAGSLRQLDPRVTARRPLDFCCYSVGFCSGQIRDLGDRHSAVIA 246
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
+ GL + V + +Y+ + +R LP++IDG+V+K++ L +Q+ LGF S
Sbjct: 247 RLGEWGLPVSQWMKVATAAEACEAYYQWLAGERDGLPFDIDGIVFKVDDLESQRILGFVS 306
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+A KF ++E T++ + Q+GRTG ITPVA L PV + G+T++ ATLHN EI
Sbjct: 307 RAPRWAIARKFPAQEQRTRVLDVEFQVGRTGAITPVARLDPVFVGGVTVSNATLHNADEI 366
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
R + IGD+V++ R+G+VIP++ + IL R + P+ CP C S++ +E
Sbjct: 367 ERLGLCIGDSVIIRRAGDVIPQVVAVILEERDESVRAVVFPDHCPACGSEVERVEGEAAF 426
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC G I C AQR+A LQHF+SRKAM+I GLG+K+IE+LV ++ LY ++ + L+
Sbjct: 427 RCVGGLI-CPAQRRASLQHFASRKAMDIDGLGEKVIEQLVARELITDIAGLYGLDLETLV 485
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
LDR+ K A N++ A+ KSK TT +RFIYALGIR VGE+TA+ LA +F +L+ + A +
Sbjct: 486 SLDRMGEKSAENLVAALDKSKATTLARFIYALGIREVGESTARALAMHFGSLDAIEGAGQ 545
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK------------- 601
E L + +G F ++ +R I L + G++W + ++
Sbjct: 546 EVLEEVDDVGPVVATHIRNFFSEAANRRTIEALIEAGVHWPDPVDSMAAGEEGALAGESW 605
Query: 602 ---------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
G +V +S T L+ G G KL+KA L + +LDE
Sbjct: 606 VVSGKLESMSRDQASDRLRSLGARVTGGVSNKTTRLLAGPGAGSKLKKAESLGLPVLDES 665
Query: 641 NFVKIVK 647
+F+ +++
Sbjct: 666 DFLALLE 672
>gi|445415623|ref|ZP_21434196.1| DNA ligase (NAD+) [Acinetobacter sp. WC-743]
gi|444762858|gb|ELW87209.1| DNA ligase (NAD+) [Acinetobacter sp. WC-743]
Length = 676
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 269/672 (40%), Positives = 396/672 (58%), Gaps = 43/672 (6%)
Query: 18 VTELKKELH---RHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGL 74
VT++++ + +HN AYY+ D P I D++YDQL +LK +E++YP+L+ DS VG
Sbjct: 7 VTQMRQLIQLIAKHNHAYYVMDQPSIEDSEYDQLFHQLKALEQQYPDLVQADSPVNKVG- 65
Query: 75 VGGENSKY--VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
G +K+ + HT M+SL N F+ E++ F++RI L + I+Y ELKFDG+A++
Sbjct: 66 -GKPLAKFETITHTVPMLSLGNVFNQEELFAFDRRIEERLP-NQKIQYDVELKFDGLAIS 123
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIK--YPPELLEVRCEVLIYKKD 190
L YE G L + TRGDG GE IT N+ I +P VL+ P LLEVR EVL+ K
Sbjct: 124 LWYENGVLTRGVTRGDGETGEVITQNVKTIRNLPKVLSSDKVAVPRLLEVRGEVLMPKAG 183
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F +LN G K F NPRNAAAG LRQL+P I ++ L F+A+G+ + + SS S
Sbjct: 184 FERLNAENEAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCEPNHGLSSMS 243
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
L W G ++ + + + ++ E Y++IN +R NL EIDG+V K++ L Q+KL
Sbjct: 244 ASLEWLTNFGFAVGERHFICDSIQEVQEKYQQINQERPNLAVEIDGMVIKVDDLQQQQKL 303
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF SR PR+A AYKF + ALT ++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN
Sbjct: 304 GFLSREPRWATAYKFPAVAALTTVENIDWQVGRTGTLTPVARLNPVAVGGVTVSNVTLHN 363
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI+R +++IGDTV V+RSG+VIPK+ L RP++ +P CP+C+S ++ E
Sbjct: 364 IGEIHRLDVRIGDTVSVYRSGDVIPKVEKVWLEFRPDNVVEVHLPENCPVCSSPVVMPEG 423
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI-- 488
+ARCSG + C AQR ++HF SRKAM+I GLG + +E L++ +++ D+Y +
Sbjct: 424 EALARCSGG-LYCSAQRIEAIRHFVSRKAMDIEGLGDRWVESLLHLDLLKDVADIYHLHE 482
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
+ + LL ++++ K N+L AI+ SK TT + FIYALGIR VGETTA+ LAN F+ +
Sbjct: 483 HREQLLTIEKMGEKSVQNLLDAIENSKKTTLAAFIYALGIRGVGETTARMLANTFQTFDA 542
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP 598
+ A E L P +G T + + F + +I +L GI+W LN
Sbjct: 543 IRHADLEALKKTPDVGGITAEWIVDFFQASHNLEVIDRLLAAGIHWDAPIAPTRQPLNGE 602
Query: 599 N--------------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
+ G +V +S T +V G+K G KLEKA KL I +LD
Sbjct: 603 SWVITGTLATMGRDDATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAEKLGIPVLD 662
Query: 639 EKNFVKIVKGFS 650
E+ F+ ++ +
Sbjct: 663 EQAFLALMADYG 674
>gi|333368221|ref|ZP_08460431.1| NAD-dependent DNA ligase LigA [Psychrobacter sp. 1501(2011)]
gi|332977611|gb|EGK14379.1| NAD-dependent DNA ligase LigA [Psychrobacter sp. 1501(2011)]
Length = 695
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 265/686 (38%), Positives = 402/686 (58%), Gaps = 50/686 (7%)
Query: 2 SFHAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPE 61
S + +++ +K+ +TE++K HN AYY+ D P ISDN+YDQL L ++EE+YP+
Sbjct: 19 SLNQEQQDIVAKMRTLITEVRK----HNNAYYVMDEPTISDNEYDQLRLSLIELEERYPD 74
Query: 62 LLTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-KNIEY 120
L DS T VG + V H M+SL N F+ E++ F +R+ + L KN Y
Sbjct: 75 LTQSDSPTASVGDNPLPSFSQVQHDIPMLSLGNVFNKEELAEFMRRVNDRLSSNNKNPAY 134
Query: 121 IAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEV 180
ELK DG+AV+L+Y+ G + TRGDG GE+IT N+ I+ IPLVL + E+LEV
Sbjct: 135 EMELKLDGLAVSLKYQNGRFVRGVTRGDGQTGEDITQNVKTINNIPLVLEAAFDIEVLEV 194
Query: 181 RCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL 240
R EVL+ K F +LN+ + K F NPRNAAAG LRQL+P + N+ L F+A+ V +
Sbjct: 195 RGEVLMPKAGFERLNREAKQVDGKIFANPRNAAAGSLRQLDPAVAANRPLAFYAYSVNQ- 253
Query: 241 RGMNMPS---SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGV 297
+P + SE L+W ++IG ++ V++ + + +Y+ + +R LP+EIDG
Sbjct: 254 ---GLPEHIVNQSEALDWLKEIGFTVSA-VKVVNDLEEAQAYYESVIEERSGLPFEIDGT 309
Query: 298 VYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVL 357
V K++ L Q +LG+ SR PR+A AYKF ++ +TK+ AI Q+GRTG ITPV L+PV
Sbjct: 310 VIKVDNLQLQSELGYLSREPRWATAYKFPAETVMTKLNAIEWQVGRTGQITPVGKLEPVQ 369
Query: 358 IDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNI 417
+ G+T++ TLHN EI R +++ GDTV VHR+G+VIPK+T LRP DS+ +P
Sbjct: 370 VGGVTVSNVTLHNIGEIQRLDVRAGDTVSVHRAGDVIPKVTRVWHELRPEDSQPVTLPTH 429
Query: 418 CPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNAN 477
CP+C+S ++ E +ARC+G C AQ++ L HF SRKAM+I GLG++ +
Sbjct: 430 CPVCDSPVVLPEGEALARCTGELF-CPAQQQEALIHFVSRKAMDIDGLGERWLISFFEQG 488
Query: 478 IVVTAVDLYKI--NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETT 535
IV T D+Y + + + L+ +++ K NN+L AI+ SK TT SRFIYA+GI+ VGETT
Sbjct: 489 IVKTVADIYHLEQHREALINFEKLGEKSVNNLLAAIENSKKTTLSRFIYAIGIKGVGETT 548
Query: 536 AKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW- 594
A+ LA +F +L + A+ E L +P IG+ T + F + +I L + G++W
Sbjct: 549 AQNLAKHFGDLPALMDASIESLEAVPDIGTITAEQIYDFFRAKHNVEVIEALIEAGVHWE 608
Query: 595 ---------------------------LNNPNTK------GGKVVNFISKNTNYLVKGQK 621
++ + K G KV +S T+ L+ G+K
Sbjct: 609 KVEQVVAEGLPLDGETWVITGTLVESGMSRDDAKSKLQALGAKVSGSVSAKTSALLAGEK 668
Query: 622 PGKKLEKAIKLNIKILDEKNFVKIVK 647
G KL KA +L +++++E F+++++
Sbjct: 669 AGSKLTKAQQLGVRVVEEAEFLQMIQ 694
>gi|344339682|ref|ZP_08770610.1| DNA ligase [Thiocapsa marina 5811]
gi|343800418|gb|EGV18364.1| DNA ligase [Thiocapsa marina 5811]
Length = 756
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 232/562 (41%), Positives = 358/562 (63%), Gaps = 5/562 (0%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L+ E+ RHN YY+ D+P I D +YD L EL+ +E +YPEL+T DS TQ VG
Sbjct: 17 RAAWLRTEIARHNYRYYVLDDPEIPDAEYDCLFSELQALETRYPELMTPDSPTQRVGAEP 76
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SL N SDE++I F++R+ L + Y AE K DG+A+++RYE
Sbjct: 77 LSAFAQVRHRLPMISLANAMSDEELIEFDRRVAAALPGGDPVIYTAEPKLDGLAMSIRYE 136
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG+ GE++T N+ + +PL L + P +LEVR EV + ++ F +LNK
Sbjct: 137 EGLLVQAATRGDGSTGEDVTANVRTVKSVPLRLVGEAWPAVLEVRGEVYMSREGFERLNK 196
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G + F NPRNAAAG LRQL+P++ + L F +G GE+ + S +L
Sbjct: 197 DAAERGERVFANPRNAAAGSLRQLDPRVTATRPLRFCCYGWGEI-STDPDESQYAMLQRL 255
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
G+ I E + G + +++ + +R LPYEIDGVV+K++ ++ Q +LG T+R
Sbjct: 256 AGWGIPISRELRPVEGPDGCRAYFEDLGRRRDTLPYEIDGVVFKVDRIADQARLGATARH 315
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
P++A+A KF ++EALT ++++ Q+GRTG +TPVA L+PV + G+T+ ATLHN E+ R
Sbjct: 316 PKWAIARKFPAQEALTVVESVEFQVGRTGAVTPVARLRPVQVGGVTVANATLHNMDEVTR 375
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K++++GDTVV+ R+G+VIP++ S ++ RP D+ ++P CP+C S ++ ++ARC
Sbjct: 376 KDVRVGDTVVIRRAGDVIPEVVSVLVERRPADAVPVEMPVHCPVCGSDVLRPPGEVVARC 435
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK ++HF+SR+AM+I GLG+K++E+LV++ +V DLY++ + L L
Sbjct: 436 TGG-LYCPAQRKQAIRHFASRRAMDIEGLGEKLVEQLVDSGLVREPADLYRLTAEQLAGL 494
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF---KNLECMFKAT 553
DR+ + A N++ A+++SK T F+RFI+ALGI VGETTA+ LA F LEC ++
Sbjct: 495 DRMGERSAANLIEALERSKSTRFARFIFALGIPDVGETTAQALAARFGGIAELECARESD 554
Query: 554 EEQLLNIPKIGSTTVKAFIKFI 575
+ + +G T A +F+
Sbjct: 555 FVRERGVKGVGQETATALHRFL 576
>gi|347538300|ref|YP_004845724.1| NAD-dependent DNA ligase [Pseudogulbenkiania sp. NH8B]
gi|345641477|dbj|BAK75310.1| DNA ligase, NAD-dependent [Pseudogulbenkiania sp. NH8B]
Length = 811
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 251/604 (41%), Positives = 359/604 (59%), Gaps = 44/604 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL L+R++ YY D P + D +YD+L EL+ +E +PEL DS T VG
Sbjct: 13 RIAELVPLLNRYSREYYEQDAPTVPDVEYDRLYRELEALEAAHPELHRADSPTLRVGGAP 72
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTK---------NIEYIAELKFD 127
V H M+SL+N FSD D F +R ++ + +EY + KFD
Sbjct: 73 LAEFSSVTHAVPMLSLNNAFSDPDAADFEQRHAELIQFDERVRKALGGAEVEYAVQPKFD 132
Query: 128 GIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIY 187
G+AV+L Y G L Q +TRGDG GEN+T N+ + IPL L I++PP LLEVR EVL+
Sbjct: 133 GLAVSLLYRDGVLVQGATRGDGFSGENVTENLRTVRAIPLRLAIEHPPALLEVRGEVLML 192
Query: 188 KKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPS 247
K+DF +LN + G K F NPRNAAAG LRQL+ +I + L FFA+ + ++ G + P+
Sbjct: 193 KRDFEQLNAEQAARGDKTFANPRNAAAGSLRQLDSRITARRRLSFFAYAIAQVEGADWPT 252
Query: 248 SHSELLNWYQKIGLSICGE--YSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLS 305
SH L+W ++G+ + V+ GV L +Y+ I +R +LPY+IDGVVYK+N +
Sbjct: 253 SHQAELDWLHRLGIPLVPAELRPVVRGVAGLAAYYEAILRQRASLPYDIDGVVYKVNDRA 312
Query: 306 TQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITR 365
Q+ LGF SRAPR+A+A+KF ++EALT ++AI Q+GRTG ITPVA LKPV + G+T+T
Sbjct: 313 QQEALGFVSRAPRWAIAHKFPAEEALTLVEAIEEQVGRTGAITPVARLKPVFVGGVTVTN 372
Query: 366 ATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRP------------NDS---K 410
ATLHNE E+ RK++++GDTV+V R+G+VIP++ + +L RP D
Sbjct: 373 ATLHNEDEVRRKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMRPVAGGDLFNSGDEPQYP 432
Query: 411 IFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMI 470
+++P CP+C S ++ E IARCSG I C AQR +QHF+ R+ M+I GLG++ I
Sbjct: 433 AYRLPTTCPVCGSHVVREEGEAIARCSGGLI-CRAQRSQAIQHFAGRRMMDIDGLGERYI 491
Query: 471 EKLVNANIVVTAVDLYKINFKNLLRLDR-----------------VSNKLANNILLAIQK 513
+ LV V + DLY + +LL + R ++ K A N+L AI
Sbjct: 492 DNLVEFGYVDSVADLYTLQLADLLEMKRRADERDGVVPETVQKGQIATKWAENLLAAIAG 551
Query: 514 SKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIK 573
S+ T +R ++ALGIRHVGE+TAK LA++ LE + +A L +P IG +A
Sbjct: 552 SRRPTLARLLFALGIRHVGESTAKTLADWLGRLELIRRAPAPLLAALPDIGGVVAEAIAD 611
Query: 574 FINQ 577
F +
Sbjct: 612 FFAE 615
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 35/155 (22%)
Query: 526 LGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLIS 585
LGI + E +++LA L + + +L+ + + + A ++++P R +S
Sbjct: 654 LGIPRLTELRSQQLAGQIAGLAALAASERRELMQL-DLPADVFNALADWLDEPGRRAELS 712
Query: 586 QLRDVGIYWLNNPNTK----------------------------------GGKVVNFISK 611
QL + L + T+ GGKV +SK
Sbjct: 713 QLASLVDAILADLPTQPSSANLLLEGKTLVLTGTLPTLSRDQAKELIEAAGGKVAGSVSK 772
Query: 612 NTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
T+Y+V G+ G KL KA +L + +L+E + ++
Sbjct: 773 KTHYVVAGEAAGSKLAKAEELGVPVLNEAGLLALL 807
>gi|328954073|ref|YP_004371407.1| DNA ligase [Desulfobacca acetoxidans DSM 11109]
gi|328454397|gb|AEB10226.1| DNA ligase [Desulfobacca acetoxidans DSM 11109]
Length = 676
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 264/666 (39%), Positives = 389/666 (58%), Gaps = 35/666 (5%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
+++ R L+ ++H H+ YY+ D+P ISD +YD L EL+++EE+YPEL+T DS TQ V
Sbjct: 10 EIAARAARLRDQIHYHDYRYYVLDDPEISDAEYDLLFRELERLEEEYPELVTPDSPTQRV 69
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
G E + V H M+SL+N FS+ +V F R+ L +Y+ E K DG+AVN
Sbjct: 70 GGGPAEKFESVTHRQPMLSLENAFSEGEVQEFEPRLKRFLHQQAEFDYVLEPKMDGVAVN 129
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVL--NIKYPPELLEVRCEVLIYKKD 190
L YE G L +TRGDG+ GEN+T N+ I IPLVL P LEVR EV I +
Sbjct: 130 LTYEDGLLAIGATRGDGHRGENVTQNLRTIKTIPLVLRRETTPAPAFLEVRGEVYIELAE 189
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F KLN R G F NPRNAAAG LRQL+P + + L + +G+GE+ G SSH
Sbjct: 190 FKKLNAAREAQGQPAFANPRNAAAGSLRQLDPAVTAGRPLKIYCYGIGEVAGREF-SSHW 248
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
E++ + GL + G+ + ++ ++ R LPYEIDGVV K++ L Q +L
Sbjct: 249 EVMQTLKTWGLRVNPYVDRCQGIEAAVAYHHRLEGLRHGLPYEIDGVVIKVDSLELQTRL 308
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
G SR+PR+ALAYKF + +A T+++ I +Q+GRTG +TP A++ PV + G+T++RATLHN
Sbjct: 309 GIKSRSPRWALAYKFAATQATTQVRKIIVQVGRTGAVTPTAIMAPVEVGGVTVSRATLHN 368
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
E E+ RK+++ GD V++ R+G+VIP++ I S R K FK+P CP+C++ ++ +
Sbjct: 369 EDEVARKDVREGDWVLIQRAGDVIPEVVKVITSRRTGREKPFKMPERCPVCDTPLVRPQG 428
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ RC +C AQ K ++HF+S+ AM+I GLG+K+IE+L++ +V DLY++
Sbjct: 429 EAVTRCPNP--DCSAQLKRAIRHFASKGAMDIDGLGEKIIEQLIDQGLVQDVADLYRLQA 486
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
+LL L+R + K A NI+ AI SK + RFIYALGIR+VGE TA LA +F+ L +
Sbjct: 487 SDLLPLERFAEKSAQNIVQAIAGSKKPSLGRFIYALGIRYVGEATANLLARHFQTLNALK 546
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQL------RDVGIYWLNNP------ 598
A E LL I IG + + P ++ L+++L L P
Sbjct: 547 AAAVEDLLLIEGIGPQVAASIRDYFQNPKNQALLAKLLQANLQPQAATQVLTTPLAGQTF 606
Query: 599 ------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
+GGKV + +S T+YLV G+ PG K +A++L + ILDE
Sbjct: 607 VFTGRLQQLSRDEAKALVTAQGGKVSSSVSAKTDYLVVGKDPGTKYAQALELGLTILDEA 666
Query: 641 NFVKIV 646
F +++
Sbjct: 667 GFAQLI 672
>gi|297528690|ref|YP_003669965.1| DNA ligase, NAD-dependent [Geobacillus sp. C56-T3]
gi|297251942|gb|ADI25388.1| DNA ligase, NAD-dependent [Geobacillus sp. C56-T3]
Length = 670
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 255/664 (38%), Positives = 392/664 (59%), Gaps = 45/664 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R EL++ LHR+ YY+ D P + D +YD+L+ EL IEE+YPEL T DS TQ +G
Sbjct: 9 RAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPTQRIGGPP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E + V H MMSL N F + D+ F++RI E+ Y+ ELK DG+AV++RYE
Sbjct: 69 LEAFRKVTHRIPMMSLANAFDEGDLRDFDRRIRQEVG---EAAYVCELKIDGLAVSVRYE 125
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
GY Q +TRGDG GE+IT N+ I +PL L P LE R E + K F++LN+
Sbjct: 126 DGYFVQGATRGDGTTGEDITENLKTIRSLPLRLK---EPVSLEARGEAFMPKASFLRLNE 182
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G + F NPRNAAAG LRQL+PK+ ++ L F +G+ + + SHSE L++
Sbjct: 183 ERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGI-ESHSEALDYL 241
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
Q +G + E + ++++I F + + KR LPYEIDG+V K++ + Q++LG T+++
Sbjct: 242 QALGFKVNPERRRCANIDEVIAFINEWHEKRPQLPYEIDGIVIKVDSFAQQRELGATAKS 301
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + I + +GRTG++TP A+L+PV + G T+ RATLHNE I
Sbjct: 302 PRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATLHNEDFIRE 361
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD V++ ++G++IP++ ++ R D F +P CP C S+++ ++ + RC
Sbjct: 362 KDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVMPTHCPECESELVRLDGEVALRC 421
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+C AQ + L HF+SR AMNI GLG+K++ +L NA +V DLY++ + L+ L
Sbjct: 422 LNP--KCPAQLRERLIHFASRAAMNIEGLGEKVVTQLFNAGLVHDVADLYRLTKEQLIGL 479
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N+L AI+ SK + R ++ LGIR+VG A+ LA +F+ +E + KAT+E+
Sbjct: 480 ERMGEKSATNLLAAIEASKQNSLERLLFGLGIRYVGAKAAQLLAEHFETMERLEKATKEE 539
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI-YWLNNPNTK-------------- 601
L+ +P+IG + I F +QP L+ +LR G+ P
Sbjct: 540 LMAVPEIGEKMADSIIAFFSQPEAAELLHELRLYGVNMAYKGPKRAAEAPADSAFAGKTV 599
Query: 602 ---------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
GG+V +S++T+ ++ G+ G KLEKA +L I+I DE
Sbjct: 600 VLTGKLASMSRNEAKEEIERLGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDES 659
Query: 641 NFVK 644
F++
Sbjct: 660 RFLQ 663
>gi|7673996|sp|O87703.1|DNLJ_GEOSE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|3688229|emb|CAA09732.1| DNA ligase [Geobacillus stearothermophilus]
Length = 670
Score = 490 bits (1262), Expect = e-135, Method: Compositional matrix adjust.
Identities = 253/664 (38%), Positives = 389/664 (58%), Gaps = 45/664 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R EL++ L+R+ YY+ D P + D +YD+L+ EL IEE+YPEL T DS TQ +G
Sbjct: 9 RAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPTQRIGGPP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E + V H MMSL N F + D+ F++R+ E+ Y+ ELK DG+AV++RYE
Sbjct: 69 LEAFRKVAHRVPMMSLANAFGEGDLRDFDRRVRQEVG---EAAYVCELKIDGLAVSVRYE 125
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
GY Q +TRGDG GE+IT N+ I +PL L P LE R E + K F++LN+
Sbjct: 126 DGYFVQGATRGDGTTGEDITENLKTIRSLPLRLK---EPVSLEARGEAFMPKASFLRLNE 182
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G + F NPRNAAAG LRQL+PK+ ++ L F +G+ + + + +SHSE L++
Sbjct: 183 ERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALGI-ASHSEALDYL 241
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
Q +G + E + ++++I F + + KR LPYEIDG+V K++ + Q+ LG T+++
Sbjct: 242 QALGFKVNPERRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFAQQRALGATAKS 301
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + I + +GRTG++TP A+L+PV + G T+ RATLHNE I
Sbjct: 302 PRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATLHNEDFIRE 361
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD V++ ++G++IP++ ++ R D F +P CP C S+++ +E + RC
Sbjct: 362 KDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFAMPTHCPECESELVRLEGEVALRC 421
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
C AQ + L HF+SR AMNI GLG+K++ +L NA +V DLY + + L+ L
Sbjct: 422 LNP--NCPAQLRERLIHFASRAAMNIEGLGEKVVTQLFNAGLVRDVADLYCLTKEQLVGL 479
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N+L AI+ SK + R ++ LGIR+VG A+ LA +F+ +E + +AT+E+
Sbjct: 480 ERMGEKSAANLLAAIEASKQNSLERLLFGLGIRYVGAKAAQLLAEHFETMERLERATKEE 539
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI-YWLNNPNTK-------------- 601
L+ +P+IG A F QP L+ +LR G+ P
Sbjct: 540 LMAVPEIGEKMADAITAFFAQPEATELLQELRAYGVNMAYKGPKRSAEAPADSAFAGKTV 599
Query: 602 ---------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
GG+V +S++T+ ++ G+ G KLEKA +L I+I DE
Sbjct: 600 VLTGKLASMSRNEAKEQIERLGGRVTGSVSRSTDLVIAGEDAGSKLEKAQQLGIEIWDES 659
Query: 641 NFVK 644
F++
Sbjct: 660 RFLQ 663
>gi|344199738|ref|YP_004784064.1| DNA ligase [Acidithiobacillus ferrivorans SS3]
gi|343775182|gb|AEM47738.1| DNA ligase [Acidithiobacillus ferrivorans SS3]
Length = 671
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 262/663 (39%), Positives = 403/663 (60%), Gaps = 39/663 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ +L+ EL N AYY D P +SD +YD L EL+++EE+ P+ + DS TQ VG
Sbjct: 11 RIQQLRAELVAANKAYYQQDAPTLSDAEYDARLRELRRLEERNPQWQSADSPTQRVGAAP 70
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ VH++ M SLDN F + + R+ L L + + AE KFDG++VN+RY
Sbjct: 71 LDAFTEVHYSVAMTSLDNVFDQDGFRDWLGRVQKGLHL-EEVALSAEPKFDGLSVNIRYV 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA TRGDG GE++T N+ I IPL L K P+LLE+R EV+I F +LN+
Sbjct: 130 DGKLMQAGTRGDGQSGEDVTANVRTIRNIPLQLAGKGWPDLLEIRGEVVIPVAAFQRLNE 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R H G F NPRNAAAG LRQL+ KI + L FF G GE + SHS +++
Sbjct: 190 ERLHEGENPFANPRNAAAGSLRQLDSKITAKRPLAFFPWGWGE-SSAPLGGSHSAVMHSL 248
Query: 257 QKIGLSICGEYSVLSGVNKLIE---FYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
G + S L V L+E ++ ++ R +P+EIDG+V+K++ L +++LGFT
Sbjct: 249 SVWGFEVT---SYLRNVRHLMECESYFNEMQKSREGMPFEIDGLVFKVDDLPARERLGFT 305
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
+RAPR+A+AYKF + E T ++ I +GRTG+ITPVA+L+PV + G+T++RA+LHN+ E
Sbjct: 306 ARAPRWAIAYKFPAHEERTVVEDILASVGRTGVITPVAVLQPVQVGGVTVSRASLHNQDE 365
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
+ RK+I++GDTV+V R+G+VIP++ + R ++ +++P CP+C+S+++ + +
Sbjct: 366 VDRKDIRVGDTVLVRRAGDVIPEVVMVLKEERLPAAQPWQMPLRCPVCDSEVLRLANESA 425
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
RC G + C AQR ++HF++RKAM+I GLG+K++++LV +V + D+Y ++ L
Sbjct: 426 HRCMGG-LYCPAQRMGAVEHFAARKAMDIRGLGEKLVQQLVERGLVHSVADIYHLDEAAL 484
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
L+R++++ A +L+ I++S+ T+ SRF+YALGIR VGE+TAK LA YF +LE + AT
Sbjct: 485 CGLERMASRSAQKLLVEIEQSRHTSLSRFLYALGIRQVGESTAKSLAAYFGDLEPLLAAT 544
Query: 554 EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-LNNPN------------- 599
E L NIP +G ++ + F QP + +I+ LR G+ W + P
Sbjct: 545 PEVLQNIPDVGPVVAESIVHFFAQPHNLDVIAALRTGGLDWDVVEPQKGGCFRGMTLVLT 604
Query: 600 ----------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
+GGKV + +S T+Y++ G++ G K EKA KL +K L E F+
Sbjct: 605 GSLDGMTREDAKVAIENRGGKVSSAVSAKTSYVIVGKEAGSKAEKAAKLGLKQLTEAQFL 664
Query: 644 KIV 646
++
Sbjct: 665 AML 667
>gi|148263373|ref|YP_001230079.1| NAD-dependent DNA ligase [Geobacter uraniireducens Rf4]
gi|190359259|sp|A5GA98.1|DNLJ_GEOUR RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|146396873|gb|ABQ25506.1| DNA ligase, NAD-dependent [Geobacter uraniireducens Rf4]
Length = 672
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 269/662 (40%), Positives = 394/662 (59%), Gaps = 35/662 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL KE++RHN YY+ D P I+D +YD LL EL+++E+ YP+L+T DS TQ VG
Sbjct: 9 RIQELHKEINRHNYLYYVEDRPEINDAEYDLLLRELQQLEKAYPDLVTADSPTQRVGAAP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT--KNIEYIAELKFDGIAVNLR 134
E V H M+SL+N F++E++ F++RI L L IEY+ E K DG+AV L
Sbjct: 69 LEKFSQVTHRMPMLSLENAFNEEEMHDFDERIKRFLGLAAGDEIEYVCEPKMDGLAVELV 128
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194
YE G STRGDG +GE++T N+ + IPL L I PP L EVR EV + F KL
Sbjct: 129 YENGDFTVGSTRGDGYVGEDVTQNLRTVKTIPLSLAIATPPRLFEVRGEVYLGLAPFQKL 188
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N R G F NPRNAAAG LRQL+ +I + L F + G L G +S S+LLN
Sbjct: 189 NVEREEAGDPPFANPRNAAAGSLRQLDSRITARRPLSIFCYAAGSLEGHEF-TSQSDLLN 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
GL + +SG+ ++ +Y +++ KR +LPYEIDGVV K++ Q++LG +
Sbjct: 248 TIPGWGLPVNPLIRKVSGIGGVLAYYHEMSEKRESLPYEIDGVVVKVDSFDLQRELGEKT 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R+PR+A+A+KF ++A+T ++ I Q+GRTG+ITPVA L+PV + G+ ++RATLHN E+
Sbjct: 308 RSPRWAIAWKFPPRQAVTVVEEIVPQVGRTGVITPVAHLRPVEVSGVMVSRATLHNWEEM 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
+K+I+ GDTVVV R+G+VIP + I R D + IP CP C S+++ I +
Sbjct: 368 EKKDIRKGDTVVVERAGDVIPAVVKVITEKRKGDEQPLPIPANCPECGSEVVKIPGEVAV 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC G + C AQ + + HF+SR AM+I G+G K IE+L+ +V DLY + + +
Sbjct: 428 RCLG--LSCPAQIRETIIHFASRHAMDIDGMGDKYIEQLLKLGLVKNVADLYYLKKDDFM 485
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
R +R+ +KLA N+L AI+ SK SRFIYALGIRHVGE TAK LAN F ++E + A+E
Sbjct: 486 RFERMGDKLAENLLGAIETSKQRELSRFIYALGIRHVGEHTAKLLANAFGSMENLEHASE 545
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI-----------------YWLNN 597
E+LL+I ++G ++ F + + +I ++ + G+ +
Sbjct: 546 EELLSIREVGPQVAQSIRTFFHNRNNIEVIDRMFNAGVKPSVEEKRVGGRFTGKTFVFTG 605
Query: 598 PNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
T+ GG +SK T+++V G + G KL+KA +L +K+L E F+
Sbjct: 606 ALTRFTRDDAKRMVENEGGHAAGSVSKKTDFVVAGAEAGSKLDKARQLGVKVLTEDEFLA 665
Query: 645 IV 646
++
Sbjct: 666 ML 667
>gi|337288676|ref|YP_004628148.1| DNA ligase [Thermodesulfobacterium sp. OPB45]
gi|334902414|gb|AEH23220.1| DNA ligase [Thermodesulfobacterium geofontis OPF15]
Length = 686
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 271/668 (40%), Positives = 388/668 (58%), Gaps = 41/668 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
+V +L++E+ HN YY+ D+P+ISD +YD L+ EL+++EE YPEL+T DS TQ +G
Sbjct: 18 KVKKLREEIEYHNYRYYVLDSPVISDAEYDALMRELRRLEEMYPELITPDSPTQRIGFKP 77
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN--IEYIAELKFDGIAVNLR 134
E K V H M+SLD+ ++E+VI F+KRI L L + IEY E K DG+AV L
Sbjct: 78 AEGFKEVPHAEPMLSLDDAMNEEEVIEFDKRIKRFLGLPEETPIEYTVEPKIDGLAVELV 137
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVL-----NIKYPPELLEVRCEVLIYKK 189
YE G L +TRGDG +GE++T NI I +PL L + P ++VR EV + K
Sbjct: 138 YENGSLSIGATRGDGYVGEDVTNNIKTIPTVPLRLRKFTEDAPDIPPRIDVRGEVYMNKD 197
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
+F ++N+ R G F NPRNAAAG LRQL+P I + L F +GVG++ G +
Sbjct: 198 EFKRINEERIRKGELPFANPRNAAAGSLRQLDPSITAKRKLDIFYYGVGKVEGYKF-KTQ 256
Query: 250 SELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKK 309
E+L K GL + ++ + + I ++ I R LPYEIDGVV K+N LS +K
Sbjct: 257 WEILQTLPKWGLKVNPYVKLVKDIKEAINYHHHIERIRDTLPYEIDGVVIKVNDLSLWEK 316
Query: 310 LGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLH 369
LG +R+PR+ALAYKF + T++ + Q+GRTG ITPVA+LKPV I G+ + RATLH
Sbjct: 317 LGTKARSPRYALAYKFQPTQVTTQLLDVVFQVGRTGAITPVAVLKPVQIGGVIVERATLH 376
Query: 370 NESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIE 429
NE I +I+IGD V+V R+G VIP+I I R K P CPIC +K+I
Sbjct: 377 NEDFIKNLDIRIGDWVLVQRAGEVIPEIVMPIKERRTGQEKEIIFPTHCPICGTKLIKKP 436
Query: 430 SNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489
I RC C AQ + HF+SR AMNI GLG+K+ LV+ +V DLY +
Sbjct: 437 EEAIWRCPNK--NCYAQAVRKILHFASRNAMNIEGLGEKVARDLVDRGLVQNVADLYYLK 494
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
+++ ++L + K A N+ AIQKSK TT RFIYALGIRHVGE A+ LA FK+L+ +
Sbjct: 495 WEDFMKLPGFAYKKAKNLYEAIQKSKKTTLGRFIYALGIRHVGEAMAQMLAEKFKSLDKL 554
Query: 550 FKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK-------- 601
A+ LL+IP +G K+ ++F +R +I ++ D G+ ++ +
Sbjct: 555 MNASMSDLLSIPGVGYEVAKSIVEFFKNEENRKMIQRMLDAGVTFVEEEKEEKPKILEGL 614
Query: 602 -----------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
GGK + +SKN +Y+V G PG K ++A++L +KI++
Sbjct: 615 TFVFTGTLKSMTRDEAKEIVRELGGKTTDSVSKNVDYVVAGDNPGSKYQRALQLGVKIIN 674
Query: 639 EKNFVKIV 646
E+ F+K++
Sbjct: 675 EEEFLKLI 682
>gi|261418603|ref|YP_003252285.1| NAD-dependent DNA ligase LigA [Geobacillus sp. Y412MC61]
gi|319765418|ref|YP_004130919.1| NAD-dependent DNA ligase [Geobacillus sp. Y412MC52]
gi|261375060|gb|ACX77803.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC61]
gi|317110284|gb|ADU92776.1| DNA ligase, NAD-dependent [Geobacillus sp. Y412MC52]
Length = 670
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 253/664 (38%), Positives = 392/664 (59%), Gaps = 45/664 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R EL++ LHR+ YY+ D P + D +YD+L+ EL IEE+YPEL T DS TQ +G
Sbjct: 9 RAAELRELLHRYGYEYYVLDRPSVPDAEYDRLMQELMAIEEQYPELKTSDSPTQRIGGPP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E + V H MMSL N F + D+ F++R+ E+ Y+ ELK DG+AV++RYE
Sbjct: 69 LEAFRKVTHVVPMMSLANAFDEGDLRDFDRRVRQEVG---EAAYVCELKIDGLAVSVRYE 125
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
GY Q +TRGDG GE+IT N+ I +PL L P LE R E + K F++LN+
Sbjct: 126 DGYFVQGATRGDGTTGEDITENLRTIRSLPLRLK---EPVSLEARGEAFMPKASFLRLNE 182
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G + F NPRNAAAG LRQL+PK+ ++ L + +G+ + + SHSE L++
Sbjct: 183 ERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLYVYGLANAEELGI-ESHSEALHYL 241
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
Q +G + E + ++++I F + + KR LPYEIDG+V K++ + Q++LG T+++
Sbjct: 242 QALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQRELGATAKS 301
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + I + +GRTG++TP A+L+PV + G T+ RATLHNE I
Sbjct: 302 PRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATLHNEDFIRE 361
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD V++ ++G++IP++ ++ R D F +P CP C S+++ ++ + RC
Sbjct: 362 KDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVMPTHCPECESELVRLDGEVALRC 421
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+C AQ + L HF+SR AMNI GLG+K++ +L NA +V DLY++ + L+ L
Sbjct: 422 LNP--KCPAQLRERLIHFASRAAMNIEGLGEKVVTQLFNAGLVHDVADLYRLTKEQLIGL 479
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N+L AI+ SK + R ++ LGIR+VG A+ LA +F+ +E + KAT+E+
Sbjct: 480 ERMGEKSATNLLAAIEASKQNSLERLLFGLGIRYVGAKAAQLLAEHFETMERLEKATKEE 539
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI-YWLNNPNTK-------------- 601
L+ +P+IG + I F +QP L+ +LR G+ P
Sbjct: 540 LMAVPEIGEKMADSIIAFFSQPEAAELLHELRLYGVNMAYKGPKRAAEAPADSAFAGKTV 599
Query: 602 ---------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
GG+V +S++T+ ++ G+ G KLEKA +L I+I DE
Sbjct: 600 VLTGKLASMSRNEAKEEIERLGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDES 659
Query: 641 NFVK 644
F++
Sbjct: 660 RFLQ 663
>gi|262373317|ref|ZP_06066596.1| DNA ligase, NAD-dependent [Acinetobacter junii SH205]
gi|262313342|gb|EEY94427.1| DNA ligase, NAD-dependent [Acinetobacter junii SH205]
Length = 677
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 251/669 (37%), Positives = 396/669 (59%), Gaps = 38/669 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + + +HN AYY+ D P I+D++YD L +LK +E++YPE + D+ T VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTITDSEYDHLFHQLKALEQQYPEFMQADTPTNKVGGQA 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ +D+ F +RI L + ++Y ELK DG+A++L YE
Sbjct: 69 LSKFESVTHAVPMLSLGNVFNQDDLFAFARRIDERLP-NQKVQYEVELKLDGLAISLWYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYP--PELLEVRCEVLIYKKDFIKL 194
G L + TRGDG GE+IT N+ I +P +L+ ++ P+LLEVR EVL+ K F KL
Sbjct: 128 NGVLIRGVTRGDGETGEDITQNVKTIRNLPKILSSQHQAIPQLLEVRGEVLMPKSGFEKL 187
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N + G K NPRNAAAG LRQL+P I ++ L F+A+G+ + + ++ + L+
Sbjct: 188 NADQEAKGEKTLANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCEPHHGLTTMHDSLH 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
W K G I + + ++ + Y++I ++R NL EIDG+V K++ L Q++LGF S
Sbjct: 248 WLTKFGFEIAERQYLCESIEEVQQRYEQIQLERPNLKVEIDGMVVKVDDLKQQQQLGFLS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R PR+A AYKF ++ ALTK++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI
Sbjct: 308 REPRWATAYKFPAQAALTKVENIDWQVGRTGTLTPVARLAPVFVGGVTVSNVTLHNIGEI 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
+R ++++GDTV V+R+G+VIPK+ RP D+++ +P CP+C+S ++ E +A
Sbjct: 368 HRLDVRVGDTVSVYRTGDVIPKVERVWAEFRPADAELVYLPTNCPVCDSPVVMPEGEALA 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKN 492
RCSG + C AQR ++HF SRKAM+I GLG + +E L++ +++ D+Y + + +
Sbjct: 428 RCSGG-LYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLHLDLLRDVADIYHLHEHREK 486
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LL ++++ K N++ AI SK TT +RFIYALGIR VGETTA+ LAN F+ + + A
Sbjct: 487 LLSIEKMGEKSVQNLIDAIDASKKTTLARFIYALGIRGVGETTARMLANTFQTFDALKAA 546
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
+ L P +G T + + F + ++ +L GI+W + P
Sbjct: 547 NIDALKKTPDVGDITAEWIVDFFQAEHNLEVLERLLAAGIHW-DAPTAPTRQPLNGESWV 605
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G +V +S T +V G+K G KL+KA KL+I++++E+
Sbjct: 606 VTGTLESMGRDEATQRLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAQKLDIRVMNEQE 665
Query: 642 FVKIVKGFS 650
F+ + +
Sbjct: 666 FLDFLAQYG 674
>gi|333373453|ref|ZP_08465364.1| NAD-dependent DNA ligase LigA [Desmospora sp. 8437]
gi|332970057|gb|EGK09055.1| NAD-dependent DNA ligase LigA [Desmospora sp. 8437]
Length = 670
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 244/671 (36%), Positives = 400/671 (59%), Gaps = 48/671 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ L++E+H H+ Y++ + P+ISD +YD ++ EL +E+++PEL+T DS +Q VG
Sbjct: 9 RIEALRREIHEHDHRYHVLNQPVISDQEYDAMMRELLGLEQEHPELVTPDSPSQRVG--- 65
Query: 77 GENSKY---VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNL 133
GE Y V HT M+SL N F+ E++ F++RI L ++Y+ ELK DG+AV++
Sbjct: 66 GEPLPYFEKVRHTQPMLSLANAFNFEELQEFDRRI-RRLAEVDGVDYVCELKIDGLAVSI 124
Query: 134 RYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIK 193
RYE G + + +TRGDG GENIT N+ I +PL L LEVR E + +K+F +
Sbjct: 125 RYEEGVMVRGATRGDGTTGENITQNLKTIRSLPLRLRDAV---TLEVRGEAFLPRKEFER 181
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253
+N+ + G F NPRNAAAG LRQL+PK+ + L F +G+GE+ G P +H+E L
Sbjct: 182 INRQKESRGETLFANPRNAAAGALRQLDPKLTAERALDIFLYGIGEIHGTETPGTHTESL 241
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
+ ++GL + ++ + G++ +++F R L Y+IDG+V K++ L +++LG T
Sbjct: 242 DLLSRLGLKVNPDWVTVKGIDDVMQFIDHWREHREELGYDIDGIVIKVDDLELRERLGTT 301
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
+++PR+A+AYKF ++E +T ++ + I++GRTG +TP ALL PV++ G T+ RATLHNE
Sbjct: 302 AKSPRWAIAYKFPAEEGVTVLRGVEIKVGRTGAVTPTALLDPVILAGTTVQRATLHNEDF 361
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
I K I +GD V+V ++G++IP++ + R + K +++P CP C S+++ +E +
Sbjct: 362 IREKEILLGDHVIVKKAGDIIPEVVGVVQERRTGEEKPYQMPTECPECGSELVRLEGEVA 421
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
RC +C AQ + G+ HF SR AMNI GLG+K++ +L NA++V DLY + ++L
Sbjct: 422 LRCINP--QCPAQTREGIIHFVSRGAMNIEGLGEKVVTQLFNADLVRGPADLYDLKAEDL 479
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
L L+R+ K N+L AI++SK + + I+ LGIR VG A LA +F LE + A
Sbjct: 480 LPLERMGKKSVENLLAAIEESKQNSVEKLIFGLGIRFVGAKGALILAQHFGGLEAIMAAD 539
Query: 554 EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL------------NNP--- 598
E+L + +IG ++ + ++P + + +L G+ + ++P
Sbjct: 540 REELEAVDEIGPKMAESIETYFDKPEVKETLRRLEAAGVNMMYKGPAPVQRGDSDSPFAG 599
Query: 599 ---------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
+GGKV +SKNT+Y++ G+K G KL+KA L + ++
Sbjct: 600 KTVVLTGTLESMSRKEAADRIEAQGGKVTGSVSKNTDYVIAGEKAGSKLKKARDLGVDVV 659
Query: 638 DEKNFVKIVKG 648
DE+ F+ +++G
Sbjct: 660 DEQAFLAMLEG 670
>gi|335038778|ref|ZP_08531986.1| DNA ligase [Caldalkalibacillus thermarum TA2.A1]
gi|334181339|gb|EGL83896.1| DNA ligase [Caldalkalibacillus thermarum TA2.A1]
Length = 670
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 257/667 (38%), Positives = 398/667 (59%), Gaps = 48/667 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL +++ HN Y++ D+P+ISD +YD L+ EL K+EE++PEL +S ++ VG
Sbjct: 9 RLEELYEQIENHNYHYFVLDDPLISDQEYDALMQELIKLEEQFPELKKPNSPSERVG--- 65
Query: 77 GENSKY---VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNL 133
GE Y V H M+SL N FS++D+ F++R+ L + +EY+ ELK DG+AV+L
Sbjct: 66 GEPLPYFEKVEHEIPMLSLANAFSEQDLRDFDRRVRQGLAPGEEVEYVCELKIDGLAVSL 125
Query: 134 RYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIK 193
RYE G + +TRGDG GE+IT N+ I IPL L P LEVR E + K +F +
Sbjct: 126 RYENGQFVRGATRGDGTTGEDITQNLKTIRSIPLRLK---EPVDLEVRGEAYMPKAEFER 182
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253
+NK R GL+ F NPRNAAAG LRQL+PKI + L F +G+ +++G+N+ SHSE L
Sbjct: 183 INKLRAEQGLELFANPRNAAAGSLRQLDPKIAAERKLDIFLYGIAQIKGINV-ESHSEGL 241
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
+++GL E +++ V +++F + R LPYEIDG+V K+N Q+KLG T
Sbjct: 242 AVLERLGLKTNKERTIVKTVEDMLDFIQHWTENRAKLPYEIDGIVIKVNRYDQQQKLGAT 301
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
+++PR+A+AYKF ++EA+T +K I + +GRTG +TP ALL+PV + G + RA+LHNE
Sbjct: 302 AKSPRWAIAYKFPAEEAVTILKGIEVNVGRTGAVTPTALLEPVTLAGTIVKRASLHNEDL 361
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
I+ K+I+IGD VVV ++G++IP++ S+ R +++ +P CP C S+++ ++ +
Sbjct: 362 IHEKDIRIGDHVVVKKAGDIIPEVVRSLKEKRTGAEQVYHMPESCPECGSELVRLDGEVA 421
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
RC +C AQ K GL HF SR+AMNI GLG+++I +L ++ DLY + +L
Sbjct: 422 VRCINP--QCPAQIKEGLIHFVSRQAMNIEGLGERIINQLYEHGLIRDVADLYYLTKADL 479
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
L L+R+ K N+L AI SK + + ++ LGIR VG AK LA +F+ ++ + +AT
Sbjct: 480 LPLERMGEKSVENLLKAINNSKQNSLEKLLFGLGIRFVGAKAAKLLAQHFETMDRLMQAT 539
Query: 554 EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI---YWLNNP------------ 598
+++L I +IG ++ +++ +P I++L+ G+ Y P
Sbjct: 540 QDELEAIDEIGPKMAQSIVEYFAKPEVHETINRLKQAGVNMTYKGPKPVQAEENESPFAG 599
Query: 599 ---------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
G KV +SKNT+ ++ G K G KLEKA +LNI+++
Sbjct: 600 KTIVLTGKLEQMTREEAKEKLEALGAKVTGSVSKNTDLVIAGAKAGSKLEKAKQLNIEVI 659
Query: 638 DEKNFVK 644
DE +K
Sbjct: 660 DEAELMK 666
>gi|372489327|ref|YP_005028892.1| NAD-dependent DNA ligase [Dechlorosoma suillum PS]
gi|359355880|gb|AEV27051.1| DNA ligase, NAD-dependent [Dechlorosoma suillum PS]
Length = 796
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 240/577 (41%), Positives = 356/577 (61%), Gaps = 28/577 (4%)
Query: 28 HNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTF 87
HN AYY+ D P + D +YD+L EL+ +E +YPELL+ DS TQ VG ++ V H
Sbjct: 21 HNHAYYVLDAPTVPDAEYDRLFRELQALEAEYPELLSADSPTQRVGGKPLDSFPSVSHAV 80
Query: 88 KMMSLDNGFSDEDVIIFN--KRITNELKLTKN---IEYIAELKFDGIAVNLRYEYGYLKQ 142
M+S+ E FN R+ EL+L + +EY AELKFDG+AV+LRYE+G L Q
Sbjct: 81 PMLSIQTETDTEPSGAFNFDARVRKELELEEGAAPVEYAAELKFDGLAVSLRYEHGVLVQ 140
Query: 143 ASTRGDGNIGENITTNIHIIHKIPLVLN---IKYPPELLEVRCEVLIYKKDFIKLNKYRY 199
+TRGDG GE++T N+ + IPL L PP LLEVR EV + + D + N+
Sbjct: 141 GATRGDGASGEDVTQNLRTVRSIPLRLQGPAASLPP-LLEVRGEVYMRRDDLARYNEKAL 199
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKI 259
G K NPRN AAG +RQL+P I ++ L+FFA+G+G + G +P++H+ LL+
Sbjct: 200 ARGDKTLVNPRNGAAGSIRQLDPAIAASRPLNFFAYGIGAVSGWTLPATHAGLLDALAAF 259
Query: 260 GLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRF 319
GL +C V+ G L +F++++ R +LP++IDGVVYK+N L Q +LGF SR PR+
Sbjct: 260 GLPVCQHRDVVRGAAGLADFHRRMGALRDSLPFDIDGVVYKVNSLELQARLGFRSREPRW 319
Query: 320 ALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRK-N 378
A+A+K+ ++EALT ++AI+IQ+GRTG +TPVA L+PV + G+T+T ATLHNE E+ RK
Sbjct: 320 AVAHKYPAQEALTVVEAIDIQVGRTGALTPVARLQPVFVGGVTVTNATLHNEDEMARKGG 379
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
+ GDTV+V R+G+VIP++ + RP + F++P CP+C S ++ E +ARCSG
Sbjct: 380 LCTGDTVIVRRAGDVIPEVVGVVAERRPAGATPFQMPRSCPVCGSHVVKEEGEAVARCSG 439
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
+ C AQR + HF+ R+ M+I GLG++ +E+LV +++ DLY++ +LL + R
Sbjct: 440 GFA-CRAQRIQAILHFAGRRMMDIEGLGERYVERLVEFDLIHGVADLYRLTLADLLEMKR 498
Query: 499 VSN-----------------KLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELAN 541
+++ + A N+L I SK +R ++ALGIRHVGE+TAK LA+
Sbjct: 499 LADERDGVTPETVKQGQIATRWAENLLAGIAASKTPPLARLLFALGIRHVGESTAKTLAD 558
Query: 542 YFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQP 578
+ +L + +A L +P IG+T A F +P
Sbjct: 559 WLGSLAVVRRAPAPLLAALPDIGATVATAIADFFAEP 595
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 599 NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
+GGKV +SK T+Y+V G++ G KLE A+KL + +LDE + ++
Sbjct: 739 EAQGGKVSGSVSKKTDYVVAGEEAGSKLENALKLGVPVLDETALLNLL 786
>gi|238897965|ref|YP_002923645.1| DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|257096312|sp|C4K4K4.1|DNLJ_HAMD5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|229465723|gb|ACQ67497.1| DNA ligase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 702
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 274/698 (39%), Positives = 398/698 (57%), Gaps = 61/698 (8%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ L H Y++ D P I+D +YD LL +L++ E +YPEL+ DS TQ VG
Sbjct: 7 KINQLRDVLKHHEYLYHVNDAPEITDAEYDALLEKLREWESQYPELMNPDSPTQKVGASP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT--------------------- 115
K V H M+SLDN F ++ + FNKR++ L+
Sbjct: 67 STAFKPVTHQVPMLSLDNVFDEKGFLAFNKRVSERLEAESSAQKASLNPLVRDSDQKNRS 126
Query: 116 -KNIE----YIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLN 170
KN++ + ELK DG+AV+L YE G L QA+TRG+G GENIT NI I IPL L
Sbjct: 127 EKNVQEALTFCCELKLDGLAVSLIYEKGELTQAATRGNGFQGENITHNIRTIQSIPLRLK 186
Query: 171 IKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKIL 230
K P+ +E+R EV + + F KLNK K F+NPRNAAAG LRQL+P I + L
Sbjct: 187 GKALPQRIEIRGEVYMPQAGFEKLNKQARANHEKIFSNPRNAAAGSLRQLDPHITAQRPL 246
Query: 231 HFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNL 290
+FF +GVG L G +P SH + L + GL + ++ +G +++ FY++I R L
Sbjct: 247 NFFCYGVGLLEGGVLPQSHIQRLMQLKAWGLPVHDRITLCTGAEQVMAFYQEIAQARATL 306
Query: 291 PYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPV 350
++IDG+V K++ + Q+KLGF ++APR+A A+KF ++E T++ + Q+GRTG +TPV
Sbjct: 307 GFDIDGIVIKVDDVLLQEKLGFLAKAPRWATAFKFPAQEKTTQVLGVEFQVGRTGALTPV 366
Query: 351 ALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSK 410
A L+PV + G ++ A LHN EI R ++IGDTVVV R+G+VIP+I + I+ RP ++
Sbjct: 367 ARLEPVELGGALVSNANLHNADEIARLGLRIGDTVVVRRAGDVIPQIVNVIIESRPQNTV 426
Query: 411 IFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMI 470
P+ CPIC S IE + RC+G C AQRK L+HF +R+A++I GLG K+I
Sbjct: 427 EIIFPHHCPICKSVAKRIEGEAVIRCTGGLF-CPAQRKEALKHFVARRALDIEGLGDKII 485
Query: 471 EKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRH 530
+LV+ V DL+ + + LL L R+ K A N+L +++KS+ TTF+RF+YALGIR
Sbjct: 486 HQLVDKKYVQNPADLFHLTSEKLLSLKRMREKSAQNLLNSLKKSQKTTFARFLYALGIRE 545
Query: 531 VGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDV 590
VGETTA LA YF L+ + KA E L +P +G K + F H+ +IS L V
Sbjct: 546 VGETTAANLALYFGQLDLLRKADIETLKKVPDVGEVVAKNLVDFFGNEHHQQVISALESV 605
Query: 591 GIYW-----LNNPN---------------------------TKGGKVVNFISKNTNYLVK 618
+ W + PN + G KV +SK T++L+
Sbjct: 606 -LDWPDPEPIEKPNHPFRDKTVVLTGSLNAFTRDDLKAHLISLGAKVSGSVSKKTDFLIA 664
Query: 619 GQKPGKKLEKAIKLNIKILDEKNFVKIVKGFSTE-TKI 655
G+ PG K +KA K IKI++E ++ +K E TK+
Sbjct: 665 GENPGSKAQKAEKSGIKIMNEPELIEFLKALKPEGTKV 702
>gi|332798609|ref|YP_004460108.1| DNA ligase [Tepidanaerobacter acetatoxydans Re1]
gi|332696344|gb|AEE90801.1| DNA ligase [Tepidanaerobacter acetatoxydans Re1]
Length = 675
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 260/672 (38%), Positives = 408/672 (60%), Gaps = 38/672 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL++ + HN YY+ DNP I+D +YD+L+ EL +E ++P+L+T DS +Q VG
Sbjct: 9 RIKELRESIDYHNYRYYVLDNPEITDAEYDKLMRELISLESQFPQLITPDSPSQRVGGEP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E K V H M+SL + FS+E++ FN+R+T + +EY+ ELK DG+AV+L YE
Sbjct: 69 LEAFKKVTHREPMISLADAFSEEELRDFNRRVTE--NVGNQVEYVVELKIDGLAVSLTYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYP--PELLEVRCEVLIYKKDFIKL 194
G L A+TRGDG +GE++T N+ I +PL LNI+ P ++EVR E+ + K+ F KL
Sbjct: 127 NGLLVTAATRGDGVVGEDVTQNVKTIKSVPLRLNIQKDKIPMVIEVRGEIYLSKEGFKKL 186
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N+ R +GL F NPRNAAAG +RQL+ KI + L F + +G + G+ ++H E+L
Sbjct: 187 NEEREEMGLPTFANPRNAAAGSIRQLDSKITAKRPLSTFMYALGYVEGIEF-NTHLEVLE 245
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
+Y+ G + + + +I++ KR +LPYEIDG+V K+N L QK LG T+
Sbjct: 246 FYKACGFKVNPHIKSFNNFDDVIDYCMSWKEKRHSLPYEIDGMVIKVNSLHFQKILGSTA 305
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
+ PR+A+AYKF +++ ++ I+ I + +GRTG++TP A+L PV I G T++RATLHNE I
Sbjct: 306 KTPRWAIAYKFPAEQKISVIEDIVVSVGRTGVLTPNAVLTPVQIAGSTVSRATLHNEDYI 365
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
K+I IGD+V+V ++G++IP++ + I R + K FK+P+ CP C S++I + +
Sbjct: 366 KEKDIHIGDSVIVQKAGDIIPEVVAVIKEKRTGNEKEFKMPHRCPECGSEVIRLPGEVAY 425
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+G + C AQ + + HF+SR AM+I GLG ++ L++ N++ D+Y + + L+
Sbjct: 426 RCTG--VSCPAQIRRRIIHFASRDAMDIRGLGPAIVSLLLSENLIKDVSDIYFLKKEALI 483
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
L+R+ K ANN++ AI+ SK +R +YALGI +G + LA FK+++ + AT
Sbjct: 484 PLERMGEKSANNLIKAIENSKKQPLNRLVYALGIPLIGSKASLTLAQEFKSMDRLQNATY 543
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI------------------YWLN 596
E+L+ IP+IG ++ I F Q + LI++L++ G+ + L
Sbjct: 544 EELIKIPEIGDKMAESIIAFFKQEQTKALITRLKEAGVNMLYAKEEIGPKPLENLTFVLT 603
Query: 597 NPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
K GGKV +SK T+Y+V G+ PG K KA++L +KILDE+ F
Sbjct: 604 GALEKYSRSKAQELIENLGGKVTGSVSKKTDYVVVGKDPGSKYNKALELGVKILDEQQFE 663
Query: 644 KIVKGFSTETKI 655
+++ ET I
Sbjct: 664 EMISNAQAETSI 675
>gi|438001591|ref|YP_007271334.1| DNA ligase [Tepidanaerobacter acetatoxydans Re1]
gi|432178385|emb|CCP25358.1| DNA ligase [Tepidanaerobacter acetatoxydans Re1]
Length = 678
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 260/672 (38%), Positives = 408/672 (60%), Gaps = 38/672 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL++ + HN YY+ DNP I+D +YD+L+ EL +E ++P+L+T DS +Q VG
Sbjct: 12 RIKELRESIDYHNYRYYVLDNPEITDAEYDKLMRELISLESQFPQLITPDSPSQRVGGEP 71
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E K V H M+SL + FS+E++ FN+R+T + +EY+ ELK DG+AV+L YE
Sbjct: 72 LEAFKKVTHREPMISLADAFSEEELRDFNRRVTE--NVGNQVEYVVELKIDGLAVSLTYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYP--PELLEVRCEVLIYKKDFIKL 194
G L A+TRGDG +GE++T N+ I +PL LNI+ P ++EVR E+ + K+ F KL
Sbjct: 130 NGLLVTAATRGDGVVGEDVTQNVKTIKSVPLRLNIQKDKIPMVIEVRGEIYLSKEGFKKL 189
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N+ R +GL F NPRNAAAG +RQL+ KI + L F + +G + G+ ++H E+L
Sbjct: 190 NEEREEMGLPTFANPRNAAAGSIRQLDSKITAKRPLSTFMYALGYVEGIEF-NTHLEVLE 248
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
+Y+ G + + + +I++ KR +LPYEIDG+V K+N L QK LG T+
Sbjct: 249 FYKACGFKVNPHIKSFNNFDDVIDYCMSWKEKRHSLPYEIDGMVIKVNSLHFQKILGSTA 308
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
+ PR+A+AYKF +++ ++ I+ I + +GRTG++TP A+L PV I G T++RATLHNE I
Sbjct: 309 KTPRWAIAYKFPAEQKISVIEDIVVSVGRTGVLTPNAVLTPVQIAGSTVSRATLHNEDYI 368
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
K+I IGD+V+V ++G++IP++ + I R + K FK+P+ CP C S++I + +
Sbjct: 369 KEKDIHIGDSVIVQKAGDIIPEVVAVIKEKRTGNEKEFKMPHRCPECGSEVIRLPGEVAY 428
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+G + C AQ + + HF+SR AM+I GLG ++ L++ N++ D+Y + + L+
Sbjct: 429 RCTG--VSCPAQIRRRIIHFASRDAMDIRGLGPAIVSLLLSENLIKDVSDIYFLKKEALI 486
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
L+R+ K ANN++ AI+ SK +R +YALGI +G + LA FK+++ + AT
Sbjct: 487 PLERMGEKSANNLIKAIENSKKQPLNRLVYALGIPLIGSKASLTLAQEFKSMDRLQNATY 546
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI------------------YWLN 596
E+L+ IP+IG ++ I F Q + LI++L++ G+ + L
Sbjct: 547 EELIKIPEIGDKMAESIIAFFKQEQTKALITRLKEAGVNMLYAKEEIGPKPLENLTFVLT 606
Query: 597 NPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
K GGKV +SK T+Y+V G+ PG K KA++L +KILDE+ F
Sbjct: 607 GALEKYSRSKAQELIENLGGKVTGSVSKKTDYVVVGKDPGSKYNKALELGVKILDEQQFE 666
Query: 644 KIVKGFSTETKI 655
+++ ET I
Sbjct: 667 EMISNAQAETSI 678
>gi|393199221|ref|YP_006461063.1| NAD-dependent DNA ligase [Solibacillus silvestris StLB046]
gi|406668133|ref|ZP_11075878.1| DNA ligase [Bacillus isronensis B3W22]
gi|327438552|dbj|BAK14917.1| NAD-dependent DNA ligase [Solibacillus silvestris StLB046]
gi|405384004|gb|EKB43458.1| DNA ligase [Bacillus isronensis B3W22]
Length = 665
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 263/672 (39%), Positives = 396/672 (58%), Gaps = 48/672 (7%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+++ R+ EL K LH + AYY+ D P++ D+ YDQLL EL +EE PE + DS TQ
Sbjct: 1 MNEIEQRIAELNKLLHEYGYAYYVLDKPVVEDSVYDQLLHELIALEEANPEFIYPDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + E K V H M+SL N F++ED+ F+++I E + KN Y+ ELK DG+A
Sbjct: 61 RVGGMVLEGFKKVTHETAMLSLSNAFNEEDLRDFDRKI--EQAIGKNYSYVCELKIDGLA 118
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
++LRYE G Q +TRGDG +GE+IT N+ I IPL LN P LEVR E + KK
Sbjct: 119 ISLRYENGVFVQGATRGDGTVGEDITANLKTIRAIPLRLN---EPVTLEVRGEAYMPKKS 175
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG---ELRGMNMPS 247
F KLN+ R G + F NPRNAAAG LRQL+PKI ++ L F + VG E G++
Sbjct: 176 FEKLNERRAENGEELFANPRNAAAGSLRQLDPKIAASRNLSTFIYAVGGDGESYGID--- 232
Query: 248 SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQ 307
H E+L + +++G E + ++ F +K R NL YEIDG+V K+N + Q
Sbjct: 233 GHWEMLKYLEELGFPSNKEREYCETIEDVLAFIEKWTEARPNLSYEIDGIVIKVNRYAHQ 292
Query: 308 KKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRAT 367
+LGFT+++PR+A+AYKF ++E +TK+ I + +GRTG+ITP A+L PVL+ G T++RA+
Sbjct: 293 DELGFTAKSPRWAIAYKFPAEEVITKLLDIELTVGRTGVITPTAILTPVLVAGTTVSRAS 352
Query: 368 LHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIY 427
LHNE I K+I+I DTV+V ++G++IP+I +L RP+D+ +K+P CP C+ +++
Sbjct: 353 LHNEDLIREKDIRIDDTVIVRKAGDIIPQIVGVVLEQRPDDAVPYKMPTHCPACDEEVVR 412
Query: 428 IESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYK 487
I++++ RC +C AQ G++HF SR AMNI GLG+K++E+L+ + LY+
Sbjct: 413 IDTDVALRCVNP--QCPAQIAEGVKHFVSRNAMNIDGLGEKVVEQLLREGYIQDVAGLYE 470
Query: 488 INFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLE 547
+ + L+ L+R+ K A N++ A+ +SK + R ++ LGIRHVGE AK LA +F+ ++
Sbjct: 471 LTVEQLINLERMGQKSATNLVEALIQSKDNSLERLLFGLGIRHVGEKAAKILAAHFETID 530
Query: 548 CMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG-----------IYWLN 596
+ ATEE L +I +IG ++ + + + LI +L+ G +
Sbjct: 531 ALMVATEEDLKDIHEIGDKMAESIVAYFANEQVQQLIERLKGFGLNMSYKGKKIVVEAGA 590
Query: 597 NP------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKL 632
NP GG V +SK T+ ++ G+ G KLEKA L
Sbjct: 591 NPFAGKTIVLTGKLQQLTRNEAKAKIEQLGGTVAGSVSKKTDLVIVGEDAGSKLEKAQSL 650
Query: 633 NIKILDEKNFVK 644
I+I DE ++
Sbjct: 651 GIEIWDEVRLIE 662
>gi|124302218|gb|ABN05294.1| DNA ligase [Geobacillus sp. g]
Length = 670
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 253/664 (38%), Positives = 391/664 (58%), Gaps = 45/664 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R EL++ LHR+ YY+ P + D +YD+L+ EL IEE+YPEL T DS TQ +G
Sbjct: 9 RAAELRELLHRYGYEYYVLGRPSVPDAEYDRLMQELMAIEEQYPELKTSDSPTQRIGGPP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E + V H MMSL N F + D+ F++R+ E+ Y+ ELK DG+AV++RYE
Sbjct: 69 LEAFRKVTHVVPMMSLANAFDEGDLRDFDRRVRQEVG---EAAYVCELKIDGLAVSVRYE 125
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
GY Q +TRGDG GE+IT N+ I +PL L P LE R E + K F++LN+
Sbjct: 126 DGYFVQGATRGDGTTGEDITENLRTIRSLPLRLK---EPVSLEARGEAFMPKASFLRLNE 182
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G + F NPRNAAAG LRQL+PK+ ++ L F +G+ + + SHSE L++
Sbjct: 183 ERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGI-ESHSEALDYL 241
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
Q +G + E + ++++I F + + KR LPYEIDG+V K++ + Q++LG T+++
Sbjct: 242 QALGFKVNPERRRCANIDEVIAFVNEWHEKRPQLPYEIDGIVIKVDSFAQQRELGATAKS 301
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + I + +GRTG++TP A+L+PV + G T+ RATLHNE I
Sbjct: 302 PRWAIAYKFPAEEVVTTLIGIEVNVGRTGVVTPTAILEPVRVAGTTVQRATLHNEDFIRE 361
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD V++ ++G++IP++ ++ R D F +P CP C S+++ ++ + RC
Sbjct: 362 KDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDETPFVMPTHCPECESELVRLDGEVALRC 421
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+C AQ + L HF+SR AMNI GLG+K++ +L NA +V DLY++ + L+ L
Sbjct: 422 LNP--KCPAQLRERLIHFASRAAMNIEGLGEKVVTQLFNAGLVHDVADLYRLTKEQLIGL 479
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N+L AI+ SK + R ++ LGIR+VG A+ LA +F+ +E + KAT+E+
Sbjct: 480 ERMGEKSATNLLAAIEASKQNSLERLLFGLGIRYVGAKAAQLLAEHFETMERLEKATKEE 539
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI-YWLNNPNTK-------------- 601
L+ +P+IG + I F +QP L+ +LR G+ P
Sbjct: 540 LMAVPEIGEKMAGSIIAFFSQPEAAELLHELRLYGVNMAYKGPKRAAEAPADSAFAGKTV 599
Query: 602 ---------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
GG+V +S++T+ ++ G+ G KLEKA +L I+I DE
Sbjct: 600 VLTGKLASMSRNEAKEEIERLGGRVTGSVSRSTDIVIAGEDAGSKLEKAQQLGIEIWDES 659
Query: 641 NFVK 644
F++
Sbjct: 660 RFLQ 663
>gi|365156567|ref|ZP_09352875.1| DNA ligase [Bacillus smithii 7_3_47FAA]
gi|363627159|gb|EHL78092.1| DNA ligase [Bacillus smithii 7_3_47FAA]
Length = 668
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 263/664 (39%), Positives = 390/664 (58%), Gaps = 44/664 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV EL + L++++ YY+ D P + D +YD+L+ EL +IE +PEL T DS TQ VG
Sbjct: 9 RVRELHERLNQYSYEYYVLDQPTVPDAEYDRLMQELIEIENAFPELRTPDSPTQRVGGQP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E + V H M+SL N F + D+ F++R+ L + Y+ ELK DG+AV+L YE
Sbjct: 69 LEAFQKVRHDIPMLSLANAFGEGDLRDFDRRVRE--SLNEEYSYVCELKIDGLAVSLTYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G Q STRGDG IGE+IT N+ IH IPL L P +EVR E + KK F KLN+
Sbjct: 127 NGVFVQGSTRGDGAIGEDITMNLRTIHSIPLRLK---EPVSIEVRGEAFMPKKSFEKLNR 183
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G F NPRNAAAG LRQL+PKI ++ L F +G+G +N+ SHSE L++
Sbjct: 184 EREERGETLFANPRNAAAGSLRQLDPKIAASRNLDIFLYGIGNSGNVNI-RSHSEGLDYL 242
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++G E + ++I++ K+ KR LPYEIDG+V K++ L+ Q+KLG T+++
Sbjct: 243 DRLGFKTNKERRKCKDIEEVIQYIKEYTEKRSTLPYEIDGIVIKVDSLAQQEKLGSTAKS 302
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +TK+ I + +GRTG++TP A+L+PV + G T+ RA+LHNE I
Sbjct: 303 PRWAIAYKFPAEEVVTKLLDIELSVGRTGVVTPTAVLEPVRVAGTTVQRASLHNEDYIRE 362
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD VV+ ++G++IP++ I R + K F +P CP C S+++ ++ + RC
Sbjct: 363 KDIKIGDEVVIKKAGDIIPEVVRPIKERRKGEEKEFHMPGHCPECGSELVRLDGEVALRC 422
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+C AQ + GL HF SR AMNI GLG+K+I +L +V D+Y++ LL+L
Sbjct: 423 INP--KCPAQIREGLIHFVSRNAMNIEGLGEKVIAQLFREQLVKDVADIYQLTKDQLLQL 480
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR+ K +N+L AI+ SK + R ++ LGIRHVG AK LA +F+ L+ + KA E+
Sbjct: 481 DRMGEKSVSNLLKAIEDSKENSLERLLFGLGIRHVGAKAAKTLAVHFETLDRLMKADVEE 540
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI-----------------YWL---- 595
L IP++G A + + +QP LI +L++ G+ Y+
Sbjct: 541 LTAIPEVGEKMADAVVTYFHQPEVLELIQELKEAGVNMEYKGPKPVSGDQSSSYFAGKTI 600
Query: 596 -----------NNPNTK----GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
N K GGKV +SK T+ ++ G G KL KA + +I+I DE+
Sbjct: 601 VLTGKLEALTRNEAKEKIEALGGKVSGSVSKKTDLVIAGADAGSKLAKAREFDIEIWDEE 660
Query: 641 NFVK 644
++
Sbjct: 661 KLLE 664
>gi|224826983|ref|ZP_03700081.1| DNA ligase, NAD-dependent [Pseudogulbenkiania ferrooxidans 2002]
gi|224600816|gb|EEG07001.1| DNA ligase, NAD-dependent [Pseudogulbenkiania ferrooxidans 2002]
Length = 815
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 249/604 (41%), Positives = 357/604 (59%), Gaps = 44/604 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL L+R++ YY D P + D +YD+L EL+ +E +PEL DS T VG
Sbjct: 17 RIAELVPLLNRYSREYYERDEPTVPDVEYDRLYRELEALEAAHPELRRADSPTLRVGGAP 76
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTK---------NIEYIAELKFD 127
V H M+SL+N FSD D F +R ++ + +EY + KFD
Sbjct: 77 LAEFSSVTHAVPMLSLNNAFSDLDAADFEQRHAELIQFDERVRKALGGAEVEYAVQPKFD 136
Query: 128 GIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIY 187
G+AV+L Y G L Q +TRGDG GEN+T N+ + IPL L I++PP LLEVR EVL+
Sbjct: 137 GLAVSLLYRDGVLVQGATRGDGFSGENVTENLRTVRAIPLRLTIEHPPALLEVRGEVLML 196
Query: 188 KKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPS 247
K+DF +LN + G K F NPRNAAAG LRQL+ +I + L FFA+ + ++ G + P
Sbjct: 197 KRDFEQLNAEQAARGDKTFANPRNAAAGSLRQLDSRITARRRLSFFAYAIAQVEGADWPV 256
Query: 248 SHSELLNWYQKIGLSICGE--YSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLS 305
SH L+W ++G+ + V+ GV L +Y+ I +R +LPY+IDGVVYK+N +
Sbjct: 257 SHQAELDWLHRLGIPLVPAELRPVVRGVAGLAAYYEAILRQRASLPYDIDGVVYKVNDRA 316
Query: 306 TQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITR 365
Q+ LGF SRAPR+A+A+KF ++EALT ++AI Q+GRTG ITPVA LKPV + G+T+T
Sbjct: 317 QQEALGFVSRAPRWAIAHKFPAEEALTLVEAIEEQVGRTGAITPVARLKPVFVGGVTVTN 376
Query: 366 ATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRP---------------NDSK 410
ATLHNE E+ RK++++GDTV+V R+G+VIP++ + +L RP
Sbjct: 377 ATLHNEDEVRRKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMRPVAGGDLFSSGDEPQHP 436
Query: 411 IFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMI 470
+++P CP+C S ++ E IARCSG I C AQR +QHF+ R+ M+I GLG++ I
Sbjct: 437 AYRLPTACPVCGSHVVREEGEAIARCSGGLI-CRAQRSQAIQHFAGRRMMDIDGLGERYI 495
Query: 471 EKLVNANIVVTAVDLYKINFKNLLRL-----------------DRVSNKLANNILLAIQK 513
+ LV V + DLY + +LL + +++ K A N+L AI
Sbjct: 496 DNLVEFGYVNSVADLYTLQLADLLEMKHRADERDGVVPETVQKGQIATKWAENLLAAIAA 555
Query: 514 SKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIK 573
S+ T +R ++ALGIRHVGE+TAK LA++ LE + +A L +P IG +A
Sbjct: 556 SRRPTLARLLFALGIRHVGESTAKTLADWLGRLELIRRAPAPLLAALPDIGGVVAEAIAD 615
Query: 574 FINQ 577
F +
Sbjct: 616 FFAE 619
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 35/155 (22%)
Query: 526 LGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLIS 585
LGI + E +++LA L + + +L+ + + + A ++++P R +S
Sbjct: 658 LGIPRLTELRSQQLAGQIAGLAALAASERRELMQL-DLPADVFNALADWLDEPGRRAELS 716
Query: 586 QLRDVGIYWLNNPNTK----------------------------------GGKVVNFISK 611
QL + L + T+ GGKV +SK
Sbjct: 717 QLASLVDSILADLPTQPSSANLLLEGKTLVLTGTLPTLSRDQAKELIEAAGGKVAGSVSK 776
Query: 612 NTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
T+Y+V G+ G KL KA +L + +LDE + ++
Sbjct: 777 KTHYVVAGEAAGSKLAKAEELGVPVLDEAGLLALL 811
>gi|93005182|ref|YP_579619.1| NAD-dependent DNA ligase [Psychrobacter cryohalolentis K5]
gi|122989955|sp|Q1QDW8.1|DNLJ_PSYCK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|92392860|gb|ABE74135.1| DNA ligase, NAD-dependent [Psychrobacter cryohalolentis K5]
Length = 691
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 265/680 (38%), Positives = 390/680 (57%), Gaps = 44/680 (6%)
Query: 5 AKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLT 64
AK N + ++ L +HN AYY+ DNPI+ D++YDQL L ++EE+YP+L+
Sbjct: 16 AKSAANEDAIVAQMRTFIDALKKHNYAYYVLDNPILEDSEYDQLRRSLLELEEEYPDLIQ 75
Query: 65 KDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTK-NIEYIAE 123
DS VG + V H M+SL N F +D+ F +R+ + L + + + EY E
Sbjct: 76 PDSPINQVGDMPLSAFTQVTHDIPMLSLGNVFEYDDLRDFMRRVNDRLSVAQQSPEYEME 135
Query: 124 LKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCE 183
LK DG+AV+L+Y YG QA TRGDG GE+IT N I +PL + ELLEVR E
Sbjct: 136 LKLDGLAVSLKYAYGKFVQAVTRGDGQTGEDITQNAKTIRNLPLWIPAASDIELLEVRGE 195
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
VL+ K F +LN+ G K F NPRNAAAG LRQL+P I ++ L F+ + V +
Sbjct: 196 VLMPKAGFERLNRLAEEKGDKTFANPRNAAAGSLRQLDPAIAASRPLAFYCYSVNQ---- 251
Query: 244 NMPS---SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYK 300
+P + S L W + IG ++ V+ + +Y+ + R +LP+EIDG+V K
Sbjct: 252 GLPEHIKTQSAALAWLKTIGFTVSA-VEVVQNPREAQAYYESVKETRGDLPFEIDGMVIK 310
Query: 301 INCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDG 360
+N L+ Q++LGF SR PR+A AYKF ++ +T++ AI Q+GRTG ITPV L+PV + G
Sbjct: 311 VNSLALQQQLGFLSREPRWATAYKFPAETVMTRLHAIEWQVGRTGAITPVGKLEPVKVGG 370
Query: 361 ITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPI 420
+T++ TLHN EI R +++ GD V VHR+G+VIPK+T RP +S+ K+P+ CP+
Sbjct: 371 VTVSNVTLHNFGEIQRLDVRAGDMVSVHRAGDVIPKVTRVWTDQRPENSEPVKLPSTCPV 430
Query: 421 CNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVV 480
C+S ++ + +ARC+G + C AQ+ L HF SR+AM+I GLG + +V
Sbjct: 431 CDSPVVLPKDEALARCTGG-LFCPAQQVEALIHFVSRRAMDIDGLGASWLISFFEHGLVK 489
Query: 481 TAVDLYKI--NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKE 538
T D+Y++ + + L+ L+++ K NIL AI+ SK TT +RFIYALGIR VGETTA+
Sbjct: 490 TVADIYQLHNHQEELITLEKLGEKSVQNILSAIEASKQTTLARFIYALGIRGVGETTAQN 549
Query: 539 LANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---- 594
LA F +L+ + A+ E+LL P +G+ T + KF P + +I+ LR+ G++W
Sbjct: 550 LAQQFGDLDALMSASIEKLLLTPDVGAITAELTYKFFRAPHNIEVINALREAGVHWDKVE 609
Query: 595 ----------------------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKL 626
+ K G KV IS T L+ G K G K+
Sbjct: 610 QVASEGLPLDGQTWVITGALDSMARDEAKAKLQALGAKVSGSISAKTTALLAGDKAGSKM 669
Query: 627 EKAIKLNIKILDEKNFVKIV 646
KA KL +K++ E+ F+ +V
Sbjct: 670 AKAEKLGVKVVGEEEFLVLV 689
>gi|424745926|ref|ZP_18174185.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-141]
gi|422941745|gb|EKU36810.1| DNA ligase (NAD+) [Acinetobacter baumannii WC-141]
Length = 679
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 257/668 (38%), Positives = 391/668 (58%), Gaps = 38/668 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + + +HN AYY+ D P ISD++YD L +LK +EE+YPE + DS T VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEQVQSDSPTTKVGGQA 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE
Sbjct: 69 LSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKY--PPELLEVRCEVLIYKKDFIKL 194
G L + TRGDG GE+IT N+ I +P VL+ + P LLEVR EVL+ K F KL
Sbjct: 128 NGVLVRGITRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPRLLEVRGEVLMPKSGFEKL 187
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N + G K F NPRNAAAG LRQL+P I + L F+A+G+ + + S+ + L
Sbjct: 188 NADQEAKGDKTFANPRNAAAGSLRQLDPNIAAGRPLAFYAYGIAQCEPNHGLSTMHDSLQ 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
W ++G I + + + ++ + Y++I +R +L EIDG+V K++ L Q++LGF S
Sbjct: 248 WLTQLGFEIAERQYLCNSIQEVQQRYEQIQKERPDLQVEIDGMVVKVDDLKQQQQLGFLS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R PR+A AYKF ++ ALT + I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI
Sbjct: 308 REPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEI 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
+R ++++GDTV V+R+G+VIPK+ R +++I +P CP+C S ++ E +A
Sbjct: 368 HRLDVRVGDTVSVYRTGDVIPKVEKVWPEFRSPEAEIVHLPESCPVCASPVVMPEGEALA 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKN 492
RCSG + C AQR ++HF SRKA++I GLG + +E L++ +++ D+Y + + +
Sbjct: 428 RCSGG-LYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHLHEHRET 486
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A
Sbjct: 487 LLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA 546
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
E L P +G T + F P + ++ +L GI+W + P
Sbjct: 547 DVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWV 605
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G +V +S T +V G+K G KLEKA KL I +++E +
Sbjct: 606 LTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAVMNETD 665
Query: 642 FVKIVKGF 649
F+ ++ +
Sbjct: 666 FLSLMASY 673
>gi|239825842|ref|YP_002948466.1| NAD-dependent DNA ligase LigA [Geobacillus sp. WCH70]
gi|239806135|gb|ACS23200.1| DNA ligase, NAD-dependent [Geobacillus sp. WCH70]
Length = 670
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 252/667 (37%), Positives = 401/667 (60%), Gaps = 44/667 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL++ L+++N YY+ D P + D +YD+L+ EL +EE+YP+L TKDS +Q VG
Sbjct: 9 RIEELRELLNKYNYEYYVLDRPSVPDAEYDRLMQELIALEEQYPDLKTKDSPSQRVGGQA 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SL N F++ D+ F++R+ E+ ++ Y+ ELK DG+AV++RYE
Sbjct: 69 LDAFQKVEHRTPMLSLANAFNEGDLRDFDRRVRQEV--GDDVAYVCELKIDGLAVSVRYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
GY Q +TRGDG GE+IT N+ I +PL LN P LE R E + K F +LN+
Sbjct: 127 DGYFVQGATRGDGVTGEDITENLKTIRSLPLRLN---EPVTLEARGEAYMPKASFERLNE 183
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R + G + F NPRNAAAG LRQL+PKI ++ L F + + + + SHS L++
Sbjct: 184 QRRNRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYSLANAEELGI-DSHSAALDYL 242
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
Q++G E + ++++I+F + + KR +LPYEIDG+V K++ QK+LG T+++
Sbjct: 243 QQLGFKTNPERRRCANIDEVIQFVNEWHEKRSHLPYEIDGIVVKVDSFEQQKQLGATAKS 302
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +TK+ I + +GRTG++TP A+L+PV + G T+ RATLHNE I +
Sbjct: 303 PRWAVAYKFPAEEVVTKLIGIELSVGRTGVVTPTAILEPVRVAGTTVQRATLHNEDFIRQ 362
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD+V++ ++G++IP++ + + R + F +P CP C S+++ + + RC
Sbjct: 363 KDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVMPTHCPECASELVRFDGEVALRC 422
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+C AQ + GL HF SR+AMNI GLG+K+I +L ++ DLY++ + L+RL
Sbjct: 423 INP--KCPAQIREGLIHFVSRQAMNIEGLGEKVISQLFREGLIHDVADLYRLTKEQLIRL 480
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N+L AI+ SK + R ++ LGIRHVG AK LA +F ++ + AT+E+
Sbjct: 481 ERMGEKSATNLLRAIEASKQNSLERLLFGLGIRHVGAKAAKVLAEHFGTMDRLQTATKEE 540
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI-YWLNNPNTK-------------- 601
L+ I +IG + + + +P + L+++LR G+ P T
Sbjct: 541 LMAIHEIGEKMADSIVTYFAKPEVKELLNELRAYGVNMEYKGPKTPKPGDVHSYFAGKTV 600
Query: 602 ---------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
GGKV +SKNT+ ++ G G KL KA +LNI+I DE+
Sbjct: 601 VLTGKLESLSRNEAKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLNIEIWDEE 660
Query: 641 NFVKIVK 647
F++ ++
Sbjct: 661 RFLQEIE 667
>gi|406938600|gb|EKD71798.1| hypothetical protein ACD_46C00095G0003, partial [uncultured
bacterium]
Length = 602
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 257/594 (43%), Positives = 361/594 (60%), Gaps = 32/594 (5%)
Query: 83 VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQ 142
V H M+SLDN FSDED+ FN RI + L + IEY E K DG+AV++RYE G L +
Sbjct: 9 VTHDVPMLSLDNAFSDEDIEAFNSRIHDRLSVKHAIEYCCEPKLDGLAVSIRYEDGVLTK 68
Query: 143 ASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLG 202
A+TRGDG GE+IT NI I +PL L K+ P++L+VR EV + KK F LN+ G
Sbjct: 69 AATRGDGVTGEDITENIKTIKMVPLRLRGKFFPKVLDVRGEVYMPKKGFEHLNQQAEKKG 128
Query: 203 LKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLS 262
K F NPRNAAAG LRQLN +I + L + +G+G + +P HS++L+ + GL
Sbjct: 129 EKIFANPRNAAAGSLRQLNSRITALRPLEIYCYGIG-IFDATLPGKHSDILHQLSEWGLR 187
Query: 263 ICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALA 322
I V+S V +++Y + R +LPYEIDGVVYK+N + Q+KLGF +RAPR+A+A
Sbjct: 188 INPLIKVVSDVKGCLDYYHHVEKNRDSLPYEIDGVVYKVNRTADQEKLGFITRAPRWAVA 247
Query: 323 YKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIG 382
+KF ++E T I+++ Q+GRTG +TPVA LKPV + G+T++ ATLHN E+ RK+I +G
Sbjct: 248 HKFPAEEVHTIIESVEFQVGRTGALTPVARLKPVHVRGVTVSNATLHNMDEVKRKDIHVG 307
Query: 383 DTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIE 442
D VV+ R+G+VIP++ S I RP K +P CP+C+S + +E +ARC+G
Sbjct: 308 DAVVIRRAGDVIPEVVSVIKQKRPAHVKKIVLPTHCPVCHSDVEQVEGEAVARCTGGLF- 366
Query: 443 CIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNK 502
C AQRK ++HF+SR+AMNI GLG K++E+LV+ ++ D+Y + K L L+R+ K
Sbjct: 367 CPAQRKESIKHFASRRAMNIEGLGDKLVEQLVDTKLIDNVADIYHLKQKQLADLERMGEK 426
Query: 503 LANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPK 562
A N+L I+KSK TTFSRF+YALGIR VGE TAK LA YFK L+ + A+ + L +
Sbjct: 427 SALNLLDEIEKSKKTTFSRFLYALGIREVGEATAKSLAIYFKTLDALQSASIDDLQKVQD 486
Query: 563 IGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------LNNP 598
IG + F +Q +R +I +L GI W ++
Sbjct: 487 IGPVVAEHIAHFFHQKHNRDVIHKLISAGIKWEAVQAAKNLPLVGMTFVLTGTLPSMSRD 546
Query: 599 NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
K G KV +S T+Y+V G G KL KA +L I +LDE +K++
Sbjct: 547 EAKELLEKAGAKVAGSVSSKTSYVVAGTDAGSKLTKAHELKIPVLDEGGMMKML 600
>gi|386719097|ref|YP_006185423.1| DNA ligase [Stenotrophomonas maltophilia D457]
gi|384078659|emb|CCH13252.1| DNA ligase [Stenotrophomonas maltophilia D457]
Length = 821
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 256/700 (36%), Positives = 389/700 (55%), Gaps = 66/700 (9%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R +L++++ + N AY+ D P I D YD+++ EL+ +E ++PEL DS TQ VG
Sbjct: 8 RAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADSPTQQVGARP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SL N FSDE+V F +RI L +++++ AE K DG+A++LRYE
Sbjct: 68 SGRFPEVRHAVPMLSLSNAFSDEEVADFVRRIDERLG-RRSLQFSAEPKMDGLAISLRYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G+ +TRGDG+ GE++T N+ I +P L+ K P++LEVR EV + + DF N+
Sbjct: 127 DGHFVLGATRGDGSTGEDVTANLREIGDVPKRLHGKDWPDVLEVRGEVYMARADFEAYNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K NPRNAAAG LRQL+PKI+ + L FFA+G GE++G +P +HS L
Sbjct: 187 RARQQGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGGELPDTHSGTLAQL 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
G + G V+ G + L+ +Y+ I +R LP++IDGVVYK++ + Q+ +GF SRA
Sbjct: 247 GAWGFPVSGLCKVVQGADGLLGYYRDIGERRDGLPFDIDGVVYKLDDRAGQQAMGFVSRA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E T ++AI IQIGRTG TPVA L PV + G+ ++ ATLHN +I R
Sbjct: 307 PRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLHNADQIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++++GD+V+V R+G+VIP++ S IL RP + +++P CP+C S+I+ E RC
Sbjct: 367 LDVRVGDSVIVRRAGDVIPEVVSVILDRRPQGASPWQMPTRCPVCGSEIVREEGAAAWRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL--- 493
SG + C AQRK + HF+SR+AM+I GLG K IE LV+A IV + DLY++N L
Sbjct: 427 SGE-LSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIVRSVADLYRLNRDQLLHL 485
Query: 494 --------------------------------LRLD----------------------RV 499
L+LD ++
Sbjct: 486 KLVLDAEDPSALAATLKLHLPAEGSGAVLNAVLKLDGNDPAWRAQALAQPASFEWNTKKI 545
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
+ + A+N++ AI S+ T R ++ALGI HVGE+TAK LA +F +LE +
Sbjct: 546 ATRWADNLIAAIDASRAATLERLLFALGIEHVGESTAKALAQWFGDLELIRHLPWPLFKR 605
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGGKVVNFISKNTNYLVKG 619
+P IG ++ F Q ++ I L VG +++ + K+ + LV+
Sbjct: 606 VPDIGGEVARSLGHFFEQQGNQQAIDDLLQVGQVRISDVHAPSAKLREGLDL-AQLLVES 664
Query: 620 QKPG------KKLEKAIKLNIKILDEKNFVKIVKGFSTET 653
+ PG +KL A+ +LD ++ + G +T
Sbjct: 665 EIPGITRLRAEKLVAALPGAQAVLDAEHGQFVNAGLPDDT 704
>gi|299771367|ref|YP_003733393.1| NAD-dependent DNA ligase [Acinetobacter oleivorans DR1]
gi|298701455|gb|ADI92020.1| DNA ligase, NAD-dependent [Acinetobacter oleivorans DR1]
Length = 679
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 255/668 (38%), Positives = 392/668 (58%), Gaps = 38/668 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + + +HN AYY+ D P ISD++YD L +LK +EE+YP+ + DS T VG
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDQVQSDSPTTKVGGQA 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE
Sbjct: 69 LSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKY--PPELLEVRCEVLIYKKDFIKL 194
G L + TRGDG GE+IT N+ I +P VL+ + P LLEVR EVL+ K F KL
Sbjct: 128 NGVLIRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPRLLEVRGEVLMPKSGFEKL 187
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N + G K F NPRNAAAG LRQL+P I ++ L F+A+G+ + + ++ + L
Sbjct: 188 NADQEAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCEPNHNLTTMHDSLQ 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
W ++G I + + + ++ + Y++I +R +L EIDG+V K++ L Q++LGF S
Sbjct: 248 WLTQLGFEIAERQYLCNSIQEVQQRYEQIQQERPDLQVEIDGMVVKVDDLKQQQQLGFLS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R PR+A AYKF ++ ALT + I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI
Sbjct: 308 REPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEI 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
+R ++++GDTV V+R+G+VIPK+ R +++I +P CP+C S ++ E +A
Sbjct: 368 HRLDVRVGDTVSVYRTGDVIPKVEKVWPEFRSPEAEIVHLPESCPVCASPVVMPEGEALA 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKN 492
RCSG + C AQR ++HF SRKA++I GLG + +E L++ +++ D+Y + + +
Sbjct: 428 RCSGG-LYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHLHEHRET 486
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A
Sbjct: 487 LLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA 546
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
E L P +G T + F P + ++ +L GI+W + P
Sbjct: 547 DVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWV 605
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G +V +S T +V G+K G KLEKA KL I +++E +
Sbjct: 606 LTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIAVMNETD 665
Query: 642 FVKIVKGF 649
F+ ++ +
Sbjct: 666 FLSLMASY 673
>gi|253701546|ref|YP_003022735.1| NAD-dependent DNA ligase [Geobacter sp. M21]
gi|251776396|gb|ACT18977.1| DNA ligase, NAD-dependent [Geobacter sp. M21]
Length = 668
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 257/669 (38%), Positives = 387/669 (57%), Gaps = 47/669 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ L E+ RHN YY D P I+D +YD L ELK++E +P+L DS T VG G
Sbjct: 9 RIKWLSSEIERHNRLYYEQDMPEITDAEYDALFRELKELEASHPDLALPDSPTGRVG--G 66
Query: 77 GENSKY--VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIE--YIAELKFDGIAVN 132
+K+ V HT M+SL+N F+D+D++ F+ R+ L L+ E Y+ E K DG+AV
Sbjct: 67 RPVAKFTQVRHTTPMLSLENAFTDKDIVDFDDRVKRFLGLSGQAEIGYVCEPKMDGVAVE 126
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
L Y G L STRGDG +GE +T N+ I IPL L + PP LL VR EV + + F
Sbjct: 127 LVYREGLLAIGSTRGDGVVGEEVTQNLKTIKDIPLRLQTEEPPRLLTVRGEVYLPLEPFR 186
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
K N+ R G F NPRNAAAG LRQL+ KI + L F + GE+ G+ S S
Sbjct: 187 KFNQEREEAGEPPFANPRNAAAGSLRQLDSKITAKRPLSIFCYAPGEVDGVAF-DSQSHF 245
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
L+ + + ++SGV ++++Y ++ KR +LPYEIDGVV K++ S Q+ LG
Sbjct: 246 LSTIPTWRIPVNPLTKLVSGVQGVLDYYHEMMEKRDDLPYEIDGVVVKVDRFSLQRDLGE 305
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
SR+PR+A+A+KF ++A T + I Q+GRTG+ITPVA L+PV + G+ ++RATLHN
Sbjct: 306 KSRSPRWAIAWKFPPRQATTVVNDIVPQVGRTGVITPVAHLEPVNVSGVMVSRATLHNWE 365
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
E+ RK+I+ GDTVVV R+G+VIP + ++ R + +P CP+C +++ I +
Sbjct: 366 EMERKDIRRGDTVVVERAGDVIPAVVQVLVEKRQGSETLLPVPQACPVCGGEVVRIPGEV 425
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
RC G + C AQ ++HF++R+AM+I GLG+K IE+L+N ++ D+Y++ ++
Sbjct: 426 AVRCVG--LNCPAQALERVKHFAARRAMDIDGLGEKFIEQLLNLKLIRNVADIYRLTEED 483
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
+R +R+ KLA N+L +I SK SR I+ALGIRHVGE TAK LA F ++E + A
Sbjct: 484 FMRFERMGKKLAENLLNSIAASKERELSRLIFALGIRHVGEHTAKLLAGAFGSMENLAAA 543
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNT------------ 600
+EE+L +I ++G + F + ++ +L++ G+ NP
Sbjct: 544 SEEELTSIREVGPQVAASIADFFKSEENLEVLRELKEHGV----NPKAEEKRVGGRFTGK 599
Query: 601 ----------------------KGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
+GG +SK T+Y+V G G KLEKA +L +++L
Sbjct: 600 TFVFTGALEKFTRDEAKKMVELEGGHAAGSVSKKTDYVVAGADAGSKLEKAQQLGVRVLS 659
Query: 639 EKNFVKIVK 647
E +F+++++
Sbjct: 660 EDDFLELMR 668
>gi|71064896|ref|YP_263623.1| NAD dependent DNA ligase [Psychrobacter arcticus 273-4]
gi|123734475|sp|Q4FUW9.1|DNLJ_PSYA2 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|71037881|gb|AAZ18189.1| probable NAD dependent DNA ligase [Psychrobacter arcticus 273-4]
Length = 691
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 262/657 (39%), Positives = 386/657 (58%), Gaps = 38/657 (5%)
Query: 25 LHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVH 84
L +HN AYY+ DNPI+ D++YDQL L ++EE+YP+L+ DS VG + V
Sbjct: 36 LKQHNYAYYVLDNPILEDSEYDQLRRSLLELEEEYPDLVQPDSPINQVGDMPLPAFTQVT 95
Query: 85 HTFKMMSLDNGFSDEDVIIFNKRITNELKLTK-NIEYIAELKFDGIAVNLRYEYGYLKQA 143
H M+SL N F D+ F +R+ + L + + + EY ELK DG+AV+L+Y +G QA
Sbjct: 96 HDIPMLSLGNVFEYNDLRDFMRRVNDRLSVAQQSPEYEMELKLDGLAVSLKYVHGKFTQA 155
Query: 144 STRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGL 203
TRGDG GE+IT N I +PL L ELLEVR EVL+ K F +LN+
Sbjct: 156 VTRGDGQTGEDITQNAKTIRNMPLWLADAADIELLEVRGEVLMPKAGFERLNRLAAEKEE 215
Query: 204 KKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSI 263
K F NPRNAAAG LRQL+P + ++ L F+A+ V + ++ + S L W + IG S+
Sbjct: 216 KTFANPRNAAAGSLRQLDPSVAASRPLAFYAYSVNQGL-LDTIDTQSAALAWIKDIGFSV 274
Query: 264 CGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAY 323
V+S + +Y+ I R +LP+EIDG+V K+N L+ Q++LGF SR PR+A AY
Sbjct: 275 SA-VEVVSNPREAQTYYESIIATRADLPFEIDGMVIKVNSLALQQQLGFLSREPRWATAY 333
Query: 324 KFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGD 383
KF ++ +T++ AI+ Q+GRTG ITPV L+PV + G+T++ TLHN EI R +++ GD
Sbjct: 334 KFPAETVMTRLHAIDWQVGRTGQITPVGKLEPVKVGGVTVSNVTLHNFGEIQRLDVRAGD 393
Query: 384 TVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIEC 443
V VHR+G+VIPK+T RP +S+ ++P+ CP+C+S ++ + +ARC+G + C
Sbjct: 394 MVSVHRAGDVIPKVTRVWHEQRPENSEPVQLPSTCPVCDSPVVLPKDEALARCTGG-LFC 452
Query: 444 IAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKNLLRLDRVSN 501
AQ++ L HF SR+AM+I GLG + +V T D+Y++ + + L+ L+++
Sbjct: 453 PAQQQEALIHFVSRRAMDIDGLGASWLISFFEHGLVKTVADIYQLHNHQEELVTLEKLGE 512
Query: 502 KLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIP 561
K NI+ AI+ SK TT SRFIYALGIR VGETTA+ LA F +L+ + A+ E+LL P
Sbjct: 513 KSVQNIISAIEASKHTTLSRFIYALGIRGVGETTAQNLAQQFGDLDALMSASIEKLLLTP 572
Query: 562 KIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW--------------------------L 595
+G+ T + KF P + +I+ LR+ G++W +
Sbjct: 573 DVGAITAELAYKFFRAPHNIEVITALREAGVHWDKVEQVVSEGLPLDGQTWVITGALDSM 632
Query: 596 NNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
K G KV IS T L+ G K G K+ KA KL +K++ E+ F+ +V
Sbjct: 633 ARDEAKAKLQALGAKVSGSISAKTTALLAGDKAGSKMAKAEKLGVKVVGEEEFLALV 689
>gi|392953999|ref|ZP_10319551.1| DNA ligase, NAD-dependent [Hydrocarboniphaga effusa AP103]
gi|391857898|gb|EIT68428.1| DNA ligase, NAD-dependent [Hydrocarboniphaga effusa AP103]
Length = 694
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 262/680 (38%), Positives = 388/680 (57%), Gaps = 64/680 (9%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL++ L HN YY+ D+P +SD +YD+L L+K+E ++PELLT DS TQ VG
Sbjct: 9 RIAELRQALEEHNYRYYVLDDPKVSDAEYDRLFEALRKLESEHPELLTSDSPTQRVGGAP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIE---YIAELKFDGIAVNL 133
+ V H M SL + ++ F++R+ L N+E Y AE K DG+AV+L
Sbjct: 69 RPGFEEVQHRLPMQSLRKCADEGELRDFDRRVRETL----NVEFATYAAEPKLDGLAVSL 124
Query: 134 RYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIK 193
YE G + +TRGDG GE+IT N+ I +IPL L PP ++EVR EV + F +
Sbjct: 125 TYENGVFMRGATRGDGTTGEDITENLRTIRRIPLRLRGDAPP-VIEVRGEVYLPLAGFKR 183
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253
+ + G K NPRNAAAG LRQL+ +I + L F+A+GVG G P HS+ L
Sbjct: 184 MVEEATASGDKVPVNPRNAAAGSLRQLDSRITAKRPLAFYAYGVGYSEGWKAPKLHSQAL 243
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
+ G + + GV I F++ I KR L ++IDGVV+K++ L+ +++LG
Sbjct: 244 EQLRGWGFPVSEYVKTVQGVEGCIAFFEDIARKRAKLGFDIDGVVFKLDDLAGREELGSV 303
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
SR PR+A AYKF ++EA T ++ I Q+GRTG ITPVA LKPV + G ++ ATLHN E
Sbjct: 304 SREPRWACAYKFAAEEAQTLLEGIEFQVGRTGAITPVARLKPVFVGGANVSNATLHNMDE 363
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNI-----CPICNSKIIYI 428
+ RK++++GDTV+V R+G+VIP++ ++L + + P CP+C K+ +
Sbjct: 364 VRRKDVRVGDTVLVRRAGDVIPEVIGAVLEDDAARAAHLQRPEPEMLTQCPVCGGKVERV 423
Query: 429 ESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY-- 486
E ++ARC+ + C AQ L HF SRKAM++ LG+K++ +L++ NIV + D+Y
Sbjct: 424 EGEVVARCANG-LSCRAQLHGALIHFVSRKAMDVEKLGEKLLAQLIDQNIVRSPADIYDT 482
Query: 487 -KINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN 545
K+N L L+R++ K A+N++ AI+ SK TTF RF+YALG VGETTA++LA +F
Sbjct: 483 SKVNADVLTDLERMAEKSASNVIAAIEDSKSTTFQRFLYALGCPQVGETTARDLARHFGT 542
Query: 546 LECMFKATEE-----------------QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLR 588
L+ ++ ATE QL +P +G T + F N+P +R +I++L
Sbjct: 543 LDALYAATEADAPTEHDEALKDKDRFPQLRAVPDVGPTVAAHVVHFFNEPHNREVIAKLV 602
Query: 589 DVGIYW-------LNNPNTK-----------------------GGKVVNFISKNTNYLVK 618
+ G+ W N + K GGKV +SKNT++L+
Sbjct: 603 EAGVNWPAPKAAATGNLSGKTFVITGTLPGVSREEASALIEANGGKVSGSVSKNTDFLLA 662
Query: 619 GQKPGKKLEKAIKLNIKILD 638
G+ G KL KA KL + +LD
Sbjct: 663 GEAAGSKLAKAEKLGVAVLD 682
>gi|296046569|gb|ADG86426.1| NAD-dependent DNA ligase [Francisella novicida]
Length = 689
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 384/664 (57%), Gaps = 52/664 (7%)
Query: 32 YYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMS 91
YY+ D P + D +YD+L+ L +E+ PEL T DS +Q VG ++ V H M+S
Sbjct: 22 YYVLDQPSVPDAEYDRLMTALIDLEKTNPELKTIDSPSQKVGGQALKSFTQVTHQLPMLS 81
Query: 92 LDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNI 151
LDN FS +D F KR+ + L + I + AE K DG+AV+LRYE+G L QA+TRGDG++
Sbjct: 82 LDNVFSLDDFHAFVKRVKDRLNDNQAIVFCAEPKLDGLAVSLRYEHGQLIQAATRGDGSV 141
Query: 152 GENITTNIHIIHKIPLVLNIKYP----PELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFT 207
GENITTNI I IPL L + P P+++EVR EV + K F LN G K F
Sbjct: 142 GENITTNIRTIKSIPLKL-MGTPGKDFPDIVEVRGEVFMPKASFDALNTXAKKRGEKGFA 200
Query: 208 NPRNAAAGILRQLNPKINKNKILHFFAHGVG-------------ELRGMNMPSSHSELLN 254
NPRNAAAG LRQL+ KI + L F+A+ +G +L +SH E L
Sbjct: 201 NPRNAAAGSLRQLDSKITAKRNLAFYAYSLGFVGKLSDGGAESTDLTNDFFANSHHERLC 260
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
+++GL +C E +L FY+ I KR L YEIDG V K++ +S QK+LGF +
Sbjct: 261 QLKRLGLPMCPEVRLLESEQACDAFYQDILAKRSALSYEIDGTVLKVDEISLQKRLGFVA 320
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+AYKF ++E LT ++ + Q+GRTG ITPVA LKPV + G+T++ ATLHN+ EI
Sbjct: 321 RAPRWAIAYKFPAEEELTCVEDVEFQVGRTGAITPVARLKPVFVGGVTVSNATLHNQDEI 380
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
R +++ D VV+ R+G+VIP+I S +L RP+++ P CP+C+S + E +
Sbjct: 381 TRLGLKVNDFVVIRRAGDVIPQIVSVVLDKRPDNAVDIVFPTSCPVCDSAVAKPEGEAVL 440
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+ C AQRK ++HF+SRKA ++ GLG K++E+LV+ ++ T DL+K+ +
Sbjct: 441 RCTAGLF-CAAQRKEAIKHFASRKAHDVDGLGDKLVEQLVDEKLINTXADLFKLTEIQVS 499
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
+DR+ K A N++ ++++K TT ++FIY LGIR VGE TA LAN+F L + A+
Sbjct: 500 TIDRMGKKSATNLINGLEQAKSTTLAKFIYGLGIREVGEATAANLANHFYTLAAIESASL 559
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------L 595
E L N+ +G K I F + + ++S L +V ++W L
Sbjct: 560 EDLQNVSDVGEVVAKNIINFFKEEHNLAIVSGLSEV-MHWPTIEIKSAEELPLAEQIFVL 618
Query: 596 NNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
T+ G KV +SKNT+++V G K G KL KA L I +L E
Sbjct: 619 TGTLTQMGRTEAKTALQSLGAKVSGSVSKNTHFVVAGDKAGSKLTKAQDLGISVLTEDGL 678
Query: 643 VKIV 646
V ++
Sbjct: 679 VALL 682
>gi|262280095|ref|ZP_06057880.1| DNA ligase [Acinetobacter calcoaceticus RUH2202]
gi|262260446|gb|EEY79179.1| DNA ligase [Acinetobacter calcoaceticus RUH2202]
Length = 692
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 257/669 (38%), Positives = 390/669 (58%), Gaps = 38/669 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + + +HN AYY+ D P ISD++YD L +LK +EE+YPE + DS T VG
Sbjct: 22 QMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPEQVQSDSPTTKVGGQA 81
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+ ED+ F +R+ L + ++Y ELK DG+A++L YE
Sbjct: 82 LSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERLP-NQKVQYEVELKLDGLAISLWYE 140
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKY--PPELLEVRCEVLIYKKDFIKL 194
G L + TRGDG GE+IT N+ I +P VL+ + P LLEVR EVL+ K F KL
Sbjct: 141 NGVLIRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPRLLEVRGEVLMPKSGFEKL 200
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N + G K F NPRNAAAG LRQL+P I + L F+A+G+ + + + + L
Sbjct: 201 NADQEAKGDKTFANPRNAAAGSLRQLDPNIAAGRPLAFYAYGIAQCEPNHGLITMHDSLQ 260
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
W ++G I + + + ++ + Y++I +R +L EIDG+V K++ L Q++LGF S
Sbjct: 261 WLTQLGFEIAERQYLCNSIQEVQQRYEQIQQERPDLQVEIDGMVVKVDDLKQQQQLGFLS 320
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R PR+A AYKF ++ ALT + I+ Q+GRTG +TPVA L PV + G+T++ TLHN EI
Sbjct: 321 REPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVTLHNIGEI 380
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
+R ++++GDTV V+R+G+VIPK+ R D++I +P CP+C S ++ E +A
Sbjct: 381 HRLDVRVGDTVSVYRTGDVIPKVEKVWPEFRSPDAEIVHLPESCPVCASPVVMPEGEALA 440
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKN 492
RCSG + C AQR ++HF SRKA++I GLG + +E L++ +++ D+Y + + +
Sbjct: 441 RCSGG-LYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHLHEHRET 499
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LL ++++ K N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ LE + A
Sbjct: 500 LLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLEALKAA 559
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
E L P +G T + F P + ++ +L GI+W + P
Sbjct: 560 DVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHW-DAPTAPTRQPLNGESWV 618
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
G +V +S T +V G+K G KLEKA KL I +++E +
Sbjct: 619 LTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIIVMNETD 678
Query: 642 FVKIVKGFS 650
F+ ++ +
Sbjct: 679 FLSLMASYG 687
>gi|254523079|ref|ZP_05135134.1| DNA ligase, NAD-dependent [Stenotrophomonas sp. SKA14]
gi|219720670|gb|EED39195.1| DNA ligase, NAD-dependent [Stenotrophomonas sp. SKA14]
Length = 821
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 258/700 (36%), Positives = 389/700 (55%), Gaps = 66/700 (9%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R +L++++ + N AY+ D P I D YD+++ EL+ +E ++PEL DS TQ VG
Sbjct: 8 RAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADSPTQQVGARP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SL N FSDE+V F +RI L +++++ AE K DG+A++LRYE
Sbjct: 68 SGRFPEVRHAVPMLSLSNAFSDEEVADFVRRIDERLG-RRSLQFSAEPKMDGLAISLRYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G+ +TRGDG+ GE++T N+ I IP L+ K P++LEVR EV + + DF N+
Sbjct: 127 EGHFVLGATRGDGSTGEDVTANLREIGDIPKRLHGKDWPDVLEVRGEVYMARADFEAYNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K NPRNAAAG LRQL+PKI+ + L FFA+G GE++G +P +HS L
Sbjct: 187 RARQQGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGGELPDTHSGTLAQL 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
G + G V+ G + L+ +Y+ I +R LP++IDGVVYK++ + Q+ +GF SRA
Sbjct: 247 GAWGFPVSGLCKVVEGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDDRAGQQAMGFVSRA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E T ++AI IQIGRTG TPVA L PV + G+ ++ ATLHN +I R
Sbjct: 307 PRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLHNADQIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++++GD+V+V R+G+VIP++ S IL RP + +++P CP+C S+I+ E RC
Sbjct: 367 LDVRVGDSVIVRRAGDVIPEVVSVILDRRPPGTTPWQMPTRCPVCGSEIVREEGAAAWRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL--- 493
SG + C AQRK + HF+SR+AM+I GLG K IE LV+A IV + DLY++N L
Sbjct: 427 SGE-LSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIVKSVADLYRLNRDQLLHL 485
Query: 494 --------------------------------LRLD----------------------RV 499
L+LD ++
Sbjct: 486 KLVLDAEDPSALAAALKLHLPAEGSGAVLNAVLKLDGNDPGWRTQALVQPASFEWNTKKI 545
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
+ K A+N++ AI S+ T R ++ALGI HVGE+TAK LA +F +LE +
Sbjct: 546 ATKWADNLIAAIDASRAATLERLLFALGIEHVGESTAKALAQWFGDLELIRHLPWPLFKR 605
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGGKVVNFISKNTNYLVKG 619
+P IG ++ F Q ++ I L VG +++ + K+ + LV+
Sbjct: 606 VPDIGGEVARSLGHFFEQQGNQQAIDDLLKVGQVRISDVHAPSAKLREGLDL-AQLLVES 664
Query: 620 QKPG------KKLEKAIKLNIKILDEKNFVKIVKGFSTET 653
+ PG +KL A+ +LD ++ + G +T
Sbjct: 665 EIPGITRLRAEKLVAALPGAQAVLDAEHGQFVNAGLPDDT 704
>gi|71281008|ref|YP_270140.1| DNA ligase, NAD-dependent [Colwellia psychrerythraea 34H]
gi|123774873|sp|Q47YI0.1|DNLJ_COLP3 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|71146748|gb|AAZ27221.1| DNA ligase, NAD-dependent [Colwellia psychrerythraea 34H]
Length = 689
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 384/664 (57%), Gaps = 52/664 (7%)
Query: 32 YYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMS 91
YY+ D P + D +YD+L+ L +E+ PEL T DS +Q VG ++ V H M+S
Sbjct: 22 YYVLDQPSVPDAEYDRLMTALIDLEKTNPELKTIDSPSQKVGGQALKSFTQVTHQLPMLS 81
Query: 92 LDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNI 151
LDN FS +D F KR+ + L + I + AE K DG+AV+LRYE+G L QA+TRGDG++
Sbjct: 82 LDNVFSLDDFHAFVKRVKDRLNDNQAIVFCAEPKLDGLAVSLRYEHGQLIQAATRGDGSV 141
Query: 152 GENITTNIHIIHKIPLVLNIKYP----PELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFT 207
GENITTNI I IPL L + P P+++EVR EV + K F LN G K F
Sbjct: 142 GENITTNIRTIKSIPLKL-MGTPGKDFPDIVEVRGEVFMPKASFDALNTLAKKRGEKGFA 200
Query: 208 NPRNAAAGILRQLNPKINKNKILHFFAHGVG-------------ELRGMNMPSSHSELLN 254
NPRNAAAG LRQL+ KI + L F+A+ +G +L +SH E L
Sbjct: 201 NPRNAAAGSLRQLDSKITAKRNLAFYAYSLGFVGKLSDGGAESTDLTNDFFANSHHERLC 260
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
+++GL +C E +L FY+ I KR L YEIDG V K++ +S QK+LGF +
Sbjct: 261 QLKRLGLPMCPEVRLLESEQACDAFYQDILAKRSALSYEIDGTVLKVDEISLQKRLGFVA 320
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+AYKF ++E LT ++ + Q+GRTG ITPVA LKPV + G+T++ ATLHN+ EI
Sbjct: 321 RAPRWAIAYKFPAEEELTCVEDVEFQVGRTGAITPVARLKPVFVGGVTVSNATLHNQDEI 380
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
R +++ D VV+ R+G+VIP+I S +L RP+++ P CP+C+S + E +
Sbjct: 381 TRLGLKVNDFVVIRRAGDVIPQIVSVVLDKRPDNAVDIVFPTSCPVCDSAVAKPEGEAVL 440
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+ C AQRK ++HF+SRKA ++ GLG K++E+LV+ ++ T DL+K+ +
Sbjct: 441 RCTAGLF-CAAQRKEAIKHFASRKAHDVDGLGDKLVEQLVDEKLINTPADLFKLTEIQVS 499
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
+DR+ K A N++ ++++K TT ++FIY LGIR VGE TA LAN+F L + A+
Sbjct: 500 TIDRMGKKSATNLINGLEQAKSTTLAKFIYGLGIREVGEATAANLANHFYTLAAIESASL 559
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------L 595
E L N+ +G K I F + + ++S L +V ++W L
Sbjct: 560 EDLQNVSDVGEVVAKNIINFFKEEHNLAIVSGLSEV-MHWPTIEIKSAEELPLAEQIFVL 618
Query: 596 NNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
T+ G KV +SKNT+++V G K G KL KA L I +L E
Sbjct: 619 TGTLTQMGRTEAKTALQSLGAKVSGSVSKNTHFVVAGDKAGSKLTKAQDLGISVLTEDGL 678
Query: 643 VKIV 646
V ++
Sbjct: 679 VALL 682
>gi|296046593|gb|ADG86438.1| NAD-dependent DNA ligase [synthetic construct]
Length = 689
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 384/664 (57%), Gaps = 52/664 (7%)
Query: 32 YYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMS 91
YY+ D P + D +YD+L+ L +E+ PEL T DS +Q VG ++ V H M+S
Sbjct: 22 YYVLDQPSVPDAEYDRLMTALIDLEKTNPELKTIDSPSQKVGGQALKSFTQVTHQLPMLS 81
Query: 92 LDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNI 151
LDN FS +D F KR+ + L + I + AE K DG+AV+LRYE+G L QA+TRGDG++
Sbjct: 82 LDNVFSLDDFHAFVKRVKDRLNDNQAIVFCAEPKLDGLAVSLRYEHGQLIQAATRGDGSV 141
Query: 152 GENITTNIHIIHKIPLVLNIKYP----PELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFT 207
GENITTNI I IPL L + P P+++EVR EV + K F LN G K F
Sbjct: 142 GENITTNIRTIKSIPLKL-MGTPGKDFPDIVEVRGEVFMPKASFDALNTLAKKRGEKGFA 200
Query: 208 NPRNAAAGILRQLNPKINKNKILHFFAHGVG-------------ELRGMNMPSSHSELLN 254
NPRNAAAG LRQL+ KI + L F+A+ +G +L +SH E L
Sbjct: 201 NPRNAAAGSLRQLDSKITAKRNLAFYAYSLGFVGKLSDGGAESTDLTNDFFANSHHERLC 260
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
+++GL +C E +L FY+ I KR L YEIDG V K++ +S QK+LGF +
Sbjct: 261 QLKRLGLPMCPEVRLLESEQACDAFYQDILAKRSALSYEIDGTVLKVDEISLQKRLGFVA 320
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+AYKF ++E LT ++ + Q+GRTG ITPVA LKPV + G+T++ ATLHN+ EI
Sbjct: 321 RAPRWAIAYKFPAEEELTCVEDVEFQVGRTGAITPVARLKPVFVGGVTVSNATLHNQDEI 380
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
R +++ D VV+ R+G+VIP+I S +L RP+++ P CP+C+S + E +
Sbjct: 381 TRLGLKVNDFVVIRRAGDVIPQIVSVVLDKRPDNAVDIVFPTSCPVCDSAVAKPEGEAVL 440
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+ C AQRK ++HF+SRKA ++ GLG K++E+LV+ ++ T DL+K+ +
Sbjct: 441 RCTAGLF-CAAQRKEAIKHFASRKAHDVDGLGDKLVEQLVDEKLINTPADLFKLTEIQVS 499
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
+DR+ K A N++ ++++K TT ++FIY LGIR VGE TA LAN+F L + A+
Sbjct: 500 TIDRMGKKSATNLINGLEQAKSTTLAKFIYGLGIREVGEATAANLANHFYTLAAIESASL 559
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------L 595
E L N+ +G K I F + + ++S L +V ++W L
Sbjct: 560 EDLQNVSDVGEVVAKNIINFFKEEHNLAIVSGLSEV-MHWPTIEIKSAEELPLAEQIFVL 618
Query: 596 NNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
T+ G KV +SKNT+++V G K G KL KA L I +L E
Sbjct: 619 TGTLTQMGRTEAKTALQSLGAKVSGSVSKNTHFVVAGDKAGSKLTKAQDLGISVLTEDGL 678
Query: 643 VKIV 646
V ++
Sbjct: 679 VALL 682
>gi|444914603|ref|ZP_21234745.1| DNA ligase [Cystobacter fuscus DSM 2262]
gi|444714462|gb|ELW55343.1| DNA ligase [Cystobacter fuscus DSM 2262]
Length = 675
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 251/667 (37%), Positives = 401/667 (60%), Gaps = 39/667 (5%)
Query: 15 SFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGL 74
+ R+ +L+K+L HN YY+ D+P +SD +YD+L+ EL+++E ++P+L+T DS T+ VG
Sbjct: 9 AARIGQLRKDLAYHNHRYYVLDSPEVSDAEYDRLMRELQELESRHPDLVTPDSPTRRVGG 68
Query: 75 VGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLR 134
E + V H M+SL N F DE + F++RI + L + + Y+ E K DG+A+ L
Sbjct: 69 APAEKFEKVRHRVAMLSLANVFDDEGLSDFDERIRRQTGLAQ-VAYVCEPKLDGLAITLT 127
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVL----NIKYPPELLEVRCEVLIYKKD 190
YE G + +TRGDG GE+++ N+ + +P L +K P ++EVR EV I KKD
Sbjct: 128 YEQGRFVRGATRGDGTEGEDVSANLRTLRGLPTELLPQDGVKAP-GMIEVRGEVFISKKD 186
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F +LN R G F NPRNAAAG LRQL+P+I ++ L F + G+ SH+
Sbjct: 187 FKRLNDKREEEGEPLFANPRNAAAGSLRQLDPRITASRPLSLFLYECVPGEGVPAFRSHT 246
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
E L + + +GL + SV S V + E Y+ R LP+E+DG+V K++ +++L
Sbjct: 247 EKLGYLRSLGLPVNRAVSVPS-VEGVREQYRASLEGRHALPFEVDGMVVKVDDEDLRQRL 305
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
G S++PR+A+AYKF +E T ++ I + +GRTG +TPVA LKPV + G+T++RATLHN
Sbjct: 306 GQVSKSPRWAVAYKFPPEEESTLVEDIQVYVGRTGALTPVAHLKPVKVGGVTVSRATLHN 365
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
E E+ RK+++ GDTV + R+G+VIP+I + RP ++ F P CP+C++ + E
Sbjct: 366 EDELRRKDVRKGDTVFIRRAGDVIPEIVKVVEGKRPEGTEPFVFPTECPVCHAAAVKDEE 425
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
I RC+G+ C AQ ++HF+SR AM++ GLG+K+ +LV +V + DLY +
Sbjct: 426 GAIIRCTGAT--CPAQLVEKVRHFASRTAMDVDGLGEKLAAQLVETGLVKSFADLYHLTR 483
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
+ LL L+R+ +K A+N+L +I++SK TT RF+YALGIRHVGE+TA+ LA + ++ ++
Sbjct: 484 EKLLTLERMGDKSADNLLASIERSKQTTQPRFLYALGIRHVGESTARVLAEAYPDVRGLY 543
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI------------------ 592
A+ E + + +G T + F ++PL+R I+ L G+
Sbjct: 544 TASLEDITRVKDVGPTMAEVIHTFFHEPLNREAINALLAAGVTPAPPVVVKTGVFAGKTV 603
Query: 593 ------YWLNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
++ K GGKV +S+ T+ +V G+ G KL+KA +L ++I+DE+
Sbjct: 604 VLTGGMSGMSREQAKEEIERRGGKVSGSVSRKTDLVVAGEDAGSKLKKAQELGVRIVDEQ 663
Query: 641 NFVKIVK 647
F+++++
Sbjct: 664 AFLQLLQ 670
>gi|335420668|ref|ZP_08551705.1| DNA ligase, NAD-dependent [Salinisphaera shabanensis E1L3A]
gi|334894404|gb|EGM32600.1| DNA ligase, NAD-dependent [Salinisphaera shabanensis E1L3A]
Length = 699
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 254/694 (36%), Positives = 395/694 (56%), Gaps = 63/694 (9%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S + R +L ++L H+ AYY++D P ISD +YD+L EL++IE ++PEL+T DS TQ
Sbjct: 5 STTTQRAEQLAEQLREHSRAYYVHDEPTISDAEYDRLFRELQEIEAEHPELITPDSPTQR 64
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + + V H M+SL N F D ++ F++R E + Y AE KFDG A+
Sbjct: 65 VGAPPSDKFESVDHATPMLSLGNCFDDNELAEFDRR-AREAVDGGELAYCAEPKFDGTAL 123
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDF 191
NLRYE G L +A+TRGDG GE+IT N I +PL L + P+ +E+R EV++ + F
Sbjct: 124 NLRYENGVLVRATTRGDGVTGEDITPNARTIRNLPLRLAGQNVPDFIEIRGEVVLARSRF 183
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
LN G K F NPRNAA+G LRQL+ KI + L F +G+G + GM + SS E
Sbjct: 184 EALNARLEGEGHKPFVNPRNAASGSLRQLDSKITARRPLAFMGYGIGRVDGMTLASSLYE 243
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
L Q G I + G+ +Y+ + +R NL EIDG V+K++ + + +LG
Sbjct: 244 QLQQLQAWGFQISQYVDRVQGLEGCKAYYEAMAERRANLDIEIDGCVFKVDNAAVRDELG 303
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+A KF ++E T++ A+ Q+GRTG +TPVA L+PV + G+T++ A+LHN
Sbjct: 304 FVARAPRWAIARKFPAEETTTRLNAVEFQVGRTGALTPVAKLEPVFVGGVTVSNASLHNM 363
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
E+ RK+I+IGD VVV R+G+VIP+I ++ R +++ ++P CP+C S + IE
Sbjct: 364 DEVERKDIRIGDMVVVRRAGDVIPEIKE--VARRGENAREIELPGECPVCGSAVERIEGE 421
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--N 489
+ARC+G + C AQR+ L+HFSSR+A++I GLG + IE V+ ++ + D++ + +
Sbjct: 422 AVARCTGGLV-CAAQRREALKHFSSRRALDIEGLGDRQIEAFVDEGLLASPADIFALHEH 480
Query: 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
L+ + K N+L +I+ SK TT RFI+ALGIR VGET A++LA +F L+ +
Sbjct: 481 RDALVAREGYGEKSVANLLSSIESSKQTTLERFIFALGIREVGETMARDLARHFGTLDNL 540
Query: 550 F--------------------KATEEQLLN------IPKIGSTTVKAFIKFINQPLHRLL 583
+A +++L+ +P +G+ F ++ + +
Sbjct: 541 RAEAGAYLVRLDQADQAHPDNRAARDRMLSAEGLQAVPGVGARVAHCIADFFSEQRNLDV 600
Query: 584 ISQLRDVGIYW--LNNPNT-----------------------------KGGKVVNFISKN 612
I L + G+ W ++ +T +GG+V + +SK
Sbjct: 601 IDALIEAGVTWETVDTDDTPQPLAGQTFVLTGSMDSLTRDEAKARIEARGGRVTSSVSKK 660
Query: 613 TNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
T+Y+V G PG K +KA KL + +LDE F+ ++
Sbjct: 661 TDYVVAGDSPGSKRDKAEKLGVTLLDEVAFLALL 694
>gi|312112463|ref|YP_003990779.1| DNA ligase, NAD-dependent [Geobacillus sp. Y4.1MC1]
gi|311217564|gb|ADP76168.1| DNA ligase, NAD-dependent [Geobacillus sp. Y4.1MC1]
Length = 670
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 251/667 (37%), Positives = 400/667 (59%), Gaps = 44/667 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL++ L+++N YY+ D P + D++YD+L+ EL +EE+YP+L TKDS +Q VG
Sbjct: 9 RIEELRELLNQYNYEYYVLDRPSVPDSEYDRLMQELIALEEQYPDLKTKDSPSQRVGGQA 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SL N F++ D+ F++R+ E+ ++ Y+ ELK DG+AV++RYE
Sbjct: 69 LDAFQKVEHRTPMLSLANAFNEGDLRDFDRRVRQEV--GDDVAYVCELKIDGLAVSVRYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
GY Q +TRGDG GE+IT N+ I +PL LN P LE R E + K F +LN+
Sbjct: 127 DGYFVQGATRGDGVTGEDITENLKTIRSLPLRLN---EPVTLEARGEAYMPKASFERLNE 183
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G + F NPRNAAAG LRQL+PKI ++ L F +G+ + + +SHS L++
Sbjct: 184 QRRQRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYGLANAEELGI-ASHSAALDYL 242
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
Q++G E + ++++I+F + KR LPYEIDG+V K++ + Q++LG T+++
Sbjct: 243 QQLGFKTNPERRRCANMDEVIQFVNEWQEKRPQLPYEIDGIVIKVDSFAQQEQLGATAKS 302
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +TK+ I + +GRTG++TP A+L+PV + G T+ RATLHNE I
Sbjct: 303 PRWAIAYKFPAEEVVTKLIDIELNVGRTGVVTPTAILEPVRVAGTTVQRATLHNEDFIRE 362
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD+V++ ++G++IP++ + + R + F +P CP C S+++ IE + RC
Sbjct: 363 KDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVMPTHCPECASELVRIEGEVALRC 422
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+C AQ + GL HF SR+AMNI GLG+K+I +L ++ D+Y++ L+ L
Sbjct: 423 INP--KCPAQIREGLIHFVSRQAMNIEGLGEKVISQLFREGLIHDVADIYRLTKDQLIDL 480
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N+L AI+ SK + R ++ LGIRHVG AK LA +F+ ++ + AT+E+
Sbjct: 481 ERMGEKSATNLLHAIEASKQNSLERLLFGLGIRHVGAKAAKVLAEHFETMDRLQNATKEE 540
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI-YWLNNPNTK-------------- 601
L+ I +IG + + + +P + L+++LR G+ P T
Sbjct: 541 LMAIHEIGEKMADSIVTYFAKPEVKELLNELRAYGVNMEYKGPKTPKPGDVHSYFAGKTV 600
Query: 602 ---------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
GGKV +SKNT+ ++ G G KL KA +L+I+I DE
Sbjct: 601 VLTGKLESLSRNEAKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLHIEIWDET 660
Query: 641 NFVKIVK 647
F++ ++
Sbjct: 661 RFLEEIE 667
>gi|50084060|ref|YP_045570.1| DNA ligase [Acinetobacter sp. ADP1]
gi|81393600|sp|Q6FDW0.1|DNLJ_ACIAD RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|49530036|emb|CAG67748.1| DNA ligase [Acinetobacter sp. ADP1]
Length = 676
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 256/659 (38%), Positives = 387/659 (58%), Gaps = 36/659 (5%)
Query: 27 RHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHT 86
+HN AYY+ D P I+DN+YDQL +LK +E +YPEL D+ T VG + V H
Sbjct: 20 KHNHAYYVMDQPSITDNEYDQLFHQLKALEAEYPELTQADTPTNRVGGQALSKFETVTHA 79
Query: 87 FKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTR 146
M+SL N F+ ED+ F +RI L + I+Y ELK DG+A++L YE G L + TR
Sbjct: 80 VPMLSLGNVFNQEDLFAFARRIEERLP-NQQIQYDVELKLDGLAISLWYENGVLVRGVTR 138
Query: 147 GDGNIGENITTNIHIIHKIP--LVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLK 204
GDG GE+IT N+ I +P L + P LEVR EVL+ K+ F +LN G K
Sbjct: 139 GDGETGEDITQNVKTIRNLPKHLQHHSVETPRFLEVRGEVLMPKQGFERLNAANEAKGEK 198
Query: 205 KFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSIC 264
F NPRNAAAG LRQL+P I ++ L F+A+G+ + + S E L W ++G I
Sbjct: 199 TFANPRNAAAGSLRQLDPAIAASRPLAFYAYGIAQCEPHHGLGSMHESLQWLTQLGFEIA 258
Query: 265 GEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYK 324
+ S + ++ + Y++I +R +L EIDG+V K++ L Q++LGF SR PR+A AYK
Sbjct: 259 ERQFLCSSIQEVQQCYEQIQQERPDLAVEIDGMVIKVDDLKQQQQLGFLSREPRWATAYK 318
Query: 325 FLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDT 384
F ++ A+T ++ I+ Q+GRTG +TPVA L+PV + G+T++ TLHN EI+R ++++GD
Sbjct: 319 FPAEVAMTTVENIDWQVGRTGTLTPVARLQPVFVGGVTVSNVTLHNIGEIHRLDVRVGDR 378
Query: 385 VVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECI 444
V V+RSG+VIPK+ RP ++I ++P CP+C+S ++ E +ARCSG + C
Sbjct: 379 VSVYRSGDVIPKVEKVWPEFRPELAEIVQLPEQCPVCSSPVVMPEGEALARCSGG-LYCA 437
Query: 445 AQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKNLLRLDRVSNK 502
AQR ++HF SRKA++I GLG + +E L++ +++ D+Y + + + LL ++++ K
Sbjct: 438 AQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHLHEHREQLLTIEKMGEK 497
Query: 503 LANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPK 562
N++ AI+ SK TT +RFIYALGIR VGETTA+ LAN F+ L+ + +A E L P
Sbjct: 498 SVQNLMDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTLDALKQADIEALKKTPD 557
Query: 563 IGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNPN------------- 599
+G T + F + ++ +L GI+W LN +
Sbjct: 558 VGDITAEWIYDFFLAEHNIEVLDRLLAAGIHWDAPLAPTRQPLNGESWVVTGTLETMGRD 617
Query: 600 -------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGFST 651
G +V +S T +V G+K G KL+KA KL I++++E+ F+ + +S
Sbjct: 618 EATQRLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAEKLQIRVMNEQEFLAFLAQYSA 676
>gi|87119444|ref|ZP_01075341.1| NAD-dependent DNA ligase [Marinomonas sp. MED121]
gi|86164920|gb|EAQ66188.1| NAD-dependent DNA ligase [Marinomonas sp. MED121]
Length = 676
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 261/670 (38%), Positives = 387/670 (57%), Gaps = 39/670 (5%)
Query: 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG 73
++ +++EL L+ ++ AY++ D P +SD +YD L +E++ P+L+ DS TQ VG
Sbjct: 5 ITAQISELVNRLNDYSYAYHVKDEPKVSDAEYDLDYRTLIALEKQAPDLIQADSPTQRVG 64
Query: 74 LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNL 133
+ V HT M+SLDN FSDE + F +R+ +L + + Y E K DG+A++L
Sbjct: 65 EKPDSGFQTVAHTVPMLSLDNAFSDEQLEEFEQRLF-KLIGAQALSYCCEPKLDGLAISL 123
Query: 134 RYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIK 193
RYE G L + TRGDG GE+IT+NI I IPL L + PP +LEVR E+ + K F
Sbjct: 124 RYEDGILVRGLTRGDGVAGEDITSNIKTIGSIPLKLRTQTPPPVLEVRGEIYMPKAGFEA 183
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253
LNK G K F NPRNAAAG LRQL+P I ++ L A+ +G G P SH + L
Sbjct: 184 LNKQAEEKGEKAFVNPRNAAAGSLRQLDPSITASRPLVLCAYSIGHTEGWIQPDSHYDSL 243
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
+ G +S + +++Y+++ R +L Y+IDG+VYK++ L+ Q++LGF
Sbjct: 244 TLMSQWGFKTNPLMEKVSSIKGCVDYYQRLTELRPDLTYDIDGIVYKVDSLALQQELGFI 303
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
+RAPR+A+A KF ++EA+T+I ++ Q+GRTG ITPVA L PV + G+T++ ATLHN+ E
Sbjct: 304 ARAPRWAIARKFPAEEAITQILDVDFQVGRTGAITPVARLDPVFVGGVTVSNATLHNKDE 363
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
I R +++ D V + R+G+VIP++ I R DS P +CPIC S++ + +
Sbjct: 364 INRLGVRVKDFVSIRRAGDVIPQVVKVIHDKRGEDSAEVIFPEVCPICQSELEQVTGEAV 423
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN- 492
RCSG + C AQRK L+HF SRKAM+I GLG K++E+LV+ + T VD+Y + FK
Sbjct: 424 IRCSGGLV-CGAQRKEALKHFVSRKAMDIDGLGDKLVEQLVDLEFIKTPVDIYHL-FKKK 481
Query: 493 --LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
LL L+R+ K +L +I+ SK T F RFIYALGIR VGE TA+ L +FK L+ +
Sbjct: 482 QALLELERMGEKSVEKLLTSIEASKQTEFHRFIYALGIREVGEATARTLTRHFKTLDKII 541
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A E L+ + +G + +F + ++ ++ L D G+YW
Sbjct: 542 EANTESLVKVDDVGPIVAQHLRRFFFKDSNKEMVMALLDAGLYWQEKEAASGETAQPLLG 601
Query: 595 -----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
L K G KV +S T+ L+ G+K G KL KA L I+IL
Sbjct: 602 LTYVVTGTLTALKRDEVKDKLISLGAKVSGSVSAKTHCLIAGEKAGSKLTKAQDLGIQIL 661
Query: 638 DEKNFVKIVK 647
DE + +++
Sbjct: 662 DEAGMLALLE 671
>gi|390952652|ref|YP_006416411.1| NAD-dependent DNA ligase [Thiocystis violascens DSM 198]
gi|390429221|gb|AFL76286.1| DNA ligase, NAD-dependent [Thiocystis violascens DSM 198]
Length = 749
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 243/589 (41%), Positives = 358/589 (60%), Gaps = 9/589 (1%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R L+ + HN YY+ D+P I D +YD+L+ EL+ +E +YP L+T DS TQ VG
Sbjct: 10 RAESLRARIRYHNHRYYVLDDPEIPDAEYDRLIRELQALEAEYPALVTPDSPTQRVGGQP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SLDN SD +++ F++R+ + I Y+AE K DG+AVNLRYE
Sbjct: 70 RPEFLAVRHRIPMISLDNAMSDAELLEFHQRLAKSFQDDAPILYLAEPKLDGLAVNLRYE 129
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L QA+TRGDG GE++T N I IPL L + P +LEVR E+ + + F +LN
Sbjct: 130 QGILIQAATRGDGTTGEDVTQNARTIQTIPLRLLGEDWPAILEVRGEIYMTRAGFARLNA 189
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G F NPRNAAAG LRQL+ +I + L F +G GEL + S +L
Sbjct: 190 EMRRKGRTPFANPRNAAAGSLRQLDARITAGRPLAFCCYGWGEL-SASAGESQFVMLQRL 248
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
G+ I E + G++ ++ + +R L Y+IDGVV+K++ L+ Q +LG T+
Sbjct: 249 AAWGVPISKELQQVRGLDGCRAYFDALGERRDALDYDIDGVVFKVDRLADQVRLGATAHH 308
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A KF ++E LT+++A+ Q+GRTG +TPVA L+PV + G+T+ ATLHN E+ R
Sbjct: 309 PRWAVARKFPAQEELTQVEAVEFQVGRTGAVTPVARLRPVQVGGVTVANATLHNMDEVIR 368
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+++IGDTV+V R+G VIP++ + RP D + ++P+ CP+C S +I E +ARC
Sbjct: 369 KDVRIGDTVIVRRAGEVIPEVVRVVPERRPPDVRAVELPSQCPVCGSDVIRPEGEAVARC 428
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQRK ++HF+SR+AM+I GLG+K+IE+LV+ + V DLY++ + L RL
Sbjct: 429 TGG-LYCPAQRKEAIRHFASRRAMDIEGLGEKLIEQLVDLDWVREPADLYRLTPEQLARL 487
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N+L A+++SK T+F+RFI+ALGIR VGETTA+ LA F + + +A E
Sbjct: 488 ERMGEKSAANLLAALERSKETSFARFIFALGIREVGETTAQALAARFDGMASLMQARESD 547
Query: 557 LL---NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKG 602
+ I IG T A +F+ + + L D WL +G
Sbjct: 548 FVRERGIKGIGIETATALHRFLVEHPEQETDGNLAD----WLTGLGIRG 592
>gi|384134416|ref|YP_005517130.1| NAD-dependent DNA ligase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339288501|gb|AEJ42611.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 684
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 248/686 (36%), Positives = 397/686 (57%), Gaps = 57/686 (8%)
Query: 5 AKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLT 64
AK ++ + R L++++ HN YYL DNP ISD ++D L+ +L ++E KYPEL+
Sbjct: 6 AKSALSLEEARARAKVLREQIEYHNRKYYLEDNPEISDAEWDALMRDLIELERKYPELVD 65
Query: 65 KDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAEL 124
S TQ VG E V H M+SL N +S ED++ +++R+ + ++ Y+ EL
Sbjct: 66 PASPTQRVGAPALEGFAKVVHEVPMLSLANAYSTEDLLDWDRRVRQ--AVGDDVRYVCEL 123
Query: 125 KFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEV 184
K DG+AV LRY+ G L +TRGDG +GE+IT NI I +PL L+ P LEVR E
Sbjct: 124 KIDGLAVALRYQEGRLVLGATRGDGEVGEDITANIRTIRNVPLELS---EPVSLEVRGEA 180
Query: 185 LIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGV--GELRG 242
+ K++F++LN+ R G F NPRNAAAG LRQL+P + ++ L + + E G
Sbjct: 181 YMPKREFMRLNELREQQGEPLFANPRNAAAGSLRQLDPAVAASRRLGVIVYQLVRAEAHG 240
Query: 243 MNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKIN 302
+HS+ L++ ++GL E V + + +I + + KR LPY DG+V K++
Sbjct: 241 CE---THSQALDYVARLGLPAHRERHVCANIEDVIAYIEAWADKRHELPYATDGMVVKVD 297
Query: 303 CLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGIT 362
L+ Q +LG T+++PR+A+AYK+ +++A T ++AI + +GRTG++TP A+ PV + G T
Sbjct: 298 SLALQARLGATAKSPRWAIAYKYAAEQAETTLRAIELNVGRTGVVTPTAVFDPVQLAGTT 357
Query: 363 ITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICN 422
++RA+LHNE + K+I++GD +VV ++G++IP++ S+ R F++P CP C
Sbjct: 358 VSRASLHNEDLVREKDIRVGDVIVVQKAGDIIPEVIRSLPERRTEPLPEFRMPETCPQCG 417
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
S+++ ++ + RC +C A + GL HF SR AMNI GLG++ I L+ +V T
Sbjct: 418 SRLVRLDGEVAWRCINP--DCPALLREGLIHFCSRDAMNIEGLGEQWITVLLERGLVRTH 475
Query: 483 VDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY 542
DLY++ +L++LDR+ +KLA+ +L IQ+SK + R ++ LGIRHVGE AK LA +
Sbjct: 476 ADLYRLRKSDLIQLDRMGDKLADKLLHNIQESKRNSLERLLFGLGIRHVGEKAAKTLAEH 535
Query: 543 FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI---------- 592
F ++ + ATEE+L+ +P IG ++ ++ + P R LI +L+D+G+
Sbjct: 536 FGTMDTLMSATEEELMAVPDIGPKVAQSIRQYFDTPRVRQLIGELKDLGVNMVYLGPQKV 595
Query: 593 -------------------------YWLNNPNTKGGKVVNFISKNTNYLVKGQKPGKKLE 627
W+ GGKV + +S T+ L+ G+K G KL
Sbjct: 596 SDGPLAGKTVVLTGVLHAADRKQATEWIER---MGGKVASSVSAKTDVLIAGEKAGSKLA 652
Query: 628 KAIKL-------NIKILDEKNFVKIV 646
KA ++ ++I DE F+++V
Sbjct: 653 KAQEILRTHPDAKLEIWDEAAFLRLV 678
>gi|78043193|ref|YP_359946.1| NAD-dependent DNA ligase [Carboxydothermus hydrogenoformans Z-2901]
gi|123743192|sp|Q3AD38.1|DNLJ_CARHZ RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|77995308|gb|ABB14207.1| DNA ligase, NAD-dependent [Carboxydothermus hydrogenoformans
Z-2901]
Length = 664
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 263/666 (39%), Positives = 394/666 (59%), Gaps = 48/666 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL+ LH HN YY+ D P ISD +YD++L EL +E++YPE +T DS +Q VG
Sbjct: 9 RIEELRALLHYHNYRYYVLDQPEISDAEYDRMLRELISLEQQYPEFITPDSPSQRVGGEV 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M SLDN F ED+ F++R+ + L + +EY ELK DG+A++L YE
Sbjct: 69 AKEFREVAHLKPMYSLDNAFGPEDLKEFDRRVRSLLP-GQEVEYEVELKIDGLAISLVYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L + +TRG+G GE+IT N+ I IPL L + P LLEVR E + K+ F +LN+
Sbjct: 128 NGVLVRGATRGNGTTGEDITANVKTIKAIPLKL--RNPIPLLEVRGEAYMPKESFARLNE 185
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G F NPRNAAAG LRQL+PK+ + L F + +GE++G P + +EL+ W
Sbjct: 186 QREERGEPLFANPRNAAAGSLRQLDPKVTAERDLSAFMYAIGEVQGYE-PKTQAELMEWL 244
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++G + V + ++ +I + + + KRF+LPY IDG+V K+N L+ Q+ LGFT+++
Sbjct: 245 SELGFKVNPYREVFNNIDDVINYCQSWHEKRFSLPYVIDGLVIKVNSLAQQEALGFTAKS 304
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++ A T++K I +++GRTG++TP A+ +PV + G T+TRA+LHNE I
Sbjct: 305 PRWAIAYKFPAEIAETRLKDIIVRVGRTGVLTPTAIFEPVSLAGTTVTRASLHNEDYIRE 364
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD + V ++G +IP++ + R K F +P+ CP+C K + + RC
Sbjct: 365 KDIRIGDIIRVQKAGEIIPEVVEVVKEKRTGAEKEFVMPDTCPVCQGKAVRLPGEAAWRC 424
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+ + C AQ K G+ HF+SR AMNI GLG + E L+ A ++ DLY ++ + + RL
Sbjct: 425 TNA--SCPAQLKEGIVHFASRGAMNIEGLGPAVAELLLEAGLIHNYADLYYLSAEEVARL 482
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
R+ K A N++ AI+KSK + R IY LGIR VGE A++LA +FK L+ + A EE+
Sbjct: 483 PRMGKKSAENLINAIEKSKQNSLERLIYGLGIRLVGEKAARDLAVHFKELDKLIAAGEEE 542
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------- 601
++ IP +G + F Q + LI +L+ G+ NTK
Sbjct: 543 IMAIPSVGPKMAASIKAFFAQKENLELIEKLKAAGV------NTKYLAEVRDNRLEGLTF 596
Query: 602 ---------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
GGKV + +SK T+Y+V G+ PG KL KA +L I IL E+
Sbjct: 597 VLTGTLSSFTRKEAEQLILSLGGKVSSSVSKKTSYVVVGEDPGSKLTKAKELGIPILTEE 656
Query: 641 NFVKIV 646
F ++V
Sbjct: 657 EFRQMV 662
>gi|336236932|ref|YP_004589548.1| DNA ligase [Geobacillus thermoglucosidasius C56-YS93]
gi|335363787|gb|AEH49467.1| DNA ligase [Geobacillus thermoglucosidasius C56-YS93]
Length = 670
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 250/667 (37%), Positives = 400/667 (59%), Gaps = 44/667 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL++ L+++N YY+ D P + D++YD+L+ EL +EE+YP+L TKDS +Q VG
Sbjct: 9 RIEELRELLNQYNYEYYVLDRPSVPDSEYDRLMQELIALEEQYPDLKTKDSPSQRVGGQA 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SL N F++ D+ F++R+ E+ ++ Y+ ELK DG+AV++RYE
Sbjct: 69 LDAFQKVEHRTPMLSLANAFNEGDLRDFDRRVRQEV--GDDVAYVCELKIDGLAVSVRYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
GY Q +TRGDG GE+IT N+ I +PL LN P LE R E + K F +LN+
Sbjct: 127 DGYFVQGATRGDGVTGEDITENLKTIRSLPLRLN---EPVTLEARGEAYMPKASFERLNE 183
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G + F NPRNAAAG LRQL+PKI ++ L F +G+ + + +SHS L++
Sbjct: 184 QRRQRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYGLANAEELGI-ASHSAALDYL 242
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
Q++G E + ++++++F + KR LPYEIDG+V K++ + Q++LG T+++
Sbjct: 243 QQLGFKTNPERRRCANMDEVMQFVNEWQEKRPQLPYEIDGIVIKVDSFAQQEQLGATAKS 302
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +TK+ I + +GRTG++TP A+L+PV + G T+ RATLHNE I
Sbjct: 303 PRWAIAYKFPAEEVVTKLIDIELNVGRTGVVTPTAILEPVRVAGTTVQRATLHNEDFIRE 362
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD+V++ ++G++IP++ + + R + F +P CP C S+++ IE + RC
Sbjct: 363 KDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVMPTHCPECASELVRIEGEVALRC 422
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+C AQ + GL HF SR+AMNI GLG+K+I +L ++ D+Y++ L+ L
Sbjct: 423 INP--KCPAQIREGLIHFVSRQAMNIEGLGEKVISQLFREGLIHDVADIYRLTKDQLIDL 480
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N+L AI+ SK + R ++ LGIRHVG AK LA +F+ ++ + AT+E+
Sbjct: 481 ERMGEKSATNLLHAIEASKQNSLERLLFGLGIRHVGAKAAKVLAEHFETMDRLQNATKEE 540
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI-YWLNNPNTK-------------- 601
L+ I +IG + + + +P + L+++LR G+ P T
Sbjct: 541 LMAIHEIGEKMADSIVTYFAKPEVKELLNELRAYGVNMEYKGPKTPKPGDVHSYFAGKTV 600
Query: 602 ---------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
GGKV +SKNT+ ++ G G KL KA +L+I+I DE
Sbjct: 601 VLTGKLESLSRNEAKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLHIEIWDET 660
Query: 641 NFVKIVK 647
F++ ++
Sbjct: 661 RFLEEIE 667
>gi|218289368|ref|ZP_03493602.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1]
gi|218240474|gb|EED07655.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius LAA1]
Length = 684
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 247/686 (36%), Positives = 398/686 (58%), Gaps = 57/686 (8%)
Query: 5 AKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLT 64
AK ++ + R L++++ HN YYL DNP ISD ++D L+ +L ++E KYPEL+
Sbjct: 6 AKSALSLEEARARAKVLREQIEYHNRKYYLEDNPEISDAEWDALMRDLIELERKYPELVD 65
Query: 65 KDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAEL 124
S TQ VG E V H M+SL N +S ED++ +++R+ + ++ Y+ EL
Sbjct: 66 PASPTQRVGAPALEGFAKVVHEVPMLSLSNAYSTEDLLDWDRRVRQ--AVGDDVRYVCEL 123
Query: 125 KFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEV 184
K DG+AV LRY+ G L +TRGDG++GE+IT NI I +PL L+ P LEVR E
Sbjct: 124 KVDGLAVALRYQDGRLVLGATRGDGSVGEDITANIRTIRNVPLELS---EPVSLEVRGEA 180
Query: 185 LIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGV--GELRG 242
+ K++F++LN+ R G F NPRNAAAG LRQL+P + ++ L + + E G
Sbjct: 181 YMPKREFMRLNELREQQGEPLFANPRNAAAGSLRQLDPAVAASRRLGVIVYQLVRAEAHG 240
Query: 243 MNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKIN 302
+HS+ L++ ++GL E V + + +I + + KR LPY DG+V K++
Sbjct: 241 CE---THSQALDYVARLGLPAHRERHVCANIEDVIAYIEAWADKRHELPYATDGMVVKVD 297
Query: 303 CLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGIT 362
L+ Q +LG T+++PR+A+AYK+ +++A T ++AI + +GRTG++TP A+ PV + G T
Sbjct: 298 SLALQSRLGATAKSPRWAIAYKYAAEQAETTLRAIELNVGRTGVVTPTAVFDPVQLAGTT 357
Query: 363 ITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICN 422
++RA+LHNE + K+I++GD +VV ++G++IP++ S+ R F++P CP C
Sbjct: 358 VSRASLHNEDLVREKDIRVGDVIVVQKAGDIIPEVIRSLPERRTEPLPEFRMPETCPQCG 417
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
S+++ ++ + RC +C A + GL HF SR AMNI GLG++ I L++ +V T
Sbjct: 418 SRLVRLDGEVAWRCINP--DCPALLREGLIHFCSRDAMNIEGLGEQWITVLLDRGLVRTH 475
Query: 483 VDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY 542
DLY++ +L++LDR+ +KLA+ +L IQ+SK + R ++ LGIRHVGE AK LA +
Sbjct: 476 ADLYRLRKSDLIQLDRMGDKLADKLLHNIQESKRNSLERLLFGLGIRHVGEKAAKTLAEH 535
Query: 543 FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI---------- 592
F ++ + A+EE+L+ +P IG ++ ++ + P R LI +L+D+G+
Sbjct: 536 FGTIDALMSASEEELMAVPDIGPKVAQSIRQYFDTPRVRQLIQELKDLGVNMTYLGPQKV 595
Query: 593 -------------------------YWLNNPNTKGGKVVNFISKNTNYLVKGQKPGKKLE 627
W+ GGKV + +S T+ L+ G K G KL
Sbjct: 596 SDGPLAGKTVVLTGVLQAADRKQATEWIER---MGGKVASSVSAKTDVLIAGDKAGSKLA 652
Query: 628 KAIKL-------NIKILDEKNFVKIV 646
KA ++ ++I DE F+++V
Sbjct: 653 KAQEILRNHPDAKLEIWDEAAFLRLV 678
>gi|399047670|ref|ZP_10739615.1| DNA ligase, NAD-dependent [Brevibacillus sp. CF112]
gi|398054378|gb|EJL46502.1| DNA ligase, NAD-dependent [Brevibacillus sp. CF112]
Length = 668
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 263/671 (39%), Positives = 396/671 (59%), Gaps = 51/671 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ EL K + RHN YY D P I+D +YDQL+ EL ++E ++PEL + DS TQ VG
Sbjct: 9 KIKELAKRIERHNRLYYEEDRPEITDQEYDQLMRELIELETQFPELASPDSPTQRVG--- 65
Query: 77 GEN----SKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
GE K VH T M+SL N F + D+ F++R+ + ++ + Y+AELK DG+AV+
Sbjct: 66 GEPLPFFEKVVHKT-PMLSLGNAFGEADIRDFDRRVRQAVG-SQAVRYVAELKIDGLAVS 123
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
L YE G + +TRGDG IGE+IT N+ I IPL L P LEVR E + K F
Sbjct: 124 LHYENGVFVRGATRGDGTIGEDITQNLKTIRSIPLRLT---RPLTLEVRGEAYMPKAAFE 180
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
KLN+ R G F NPRN+AAG LRQL+PKI ++ L F +G+GEL G + SHSE
Sbjct: 181 KLNREREERGEALFANPRNSAAGSLRQLDPKIAASRQLDIFIYGIGELHGETV-ESHSEG 239
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
L+ + +G + E V V +L+ F + KR +LPYEIDG+V K++ + Q++LG+
Sbjct: 240 LDLLESLGFKVNKERRVFEDVGELLAFIESWTQKRPSLPYEIDGMVIKVDSYAQQEELGY 299
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
T+++PR+A+AYKF ++EA+T ++ I + +GRTG +TP ALLKPV + G T+ RA+LHNE
Sbjct: 300 TAKSPRWAIAYKFPAEEAITILEGIEVSVGRTGSVTPTALLKPVSLAGTTVKRASLHNED 359
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
I K + IGD VVV ++G++IP+I + + R + F +P CP C S+++ +E +
Sbjct: 360 IIREKGLLIGDHVVVKKAGDIIPEIIAVLPERRTGNETPFAMPTHCPECGSELVRLEEEV 419
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
RC C A + G+ HF SR AMNI GLG+K++ +L I+ + DLY ++ +
Sbjct: 420 ALRCINPM--CPALIREGMIHFVSRTAMNIDGLGEKVVAQLYRDGIIHSVADLYYLHQQR 477
Query: 493 --LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
LL ++R+ K +N+L AI+ SK + R ++ LGIR VG A+ LA +F +++ +
Sbjct: 478 DVLLGMERMGEKSVDNLLAAIEASKENSLERVLFGLGIRLVGAKAARVLAEHFGHMDAIM 537
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+EE+L I +IG + I + QP + +I +L+ G+
Sbjct: 538 QASEEELTQINEIGPKMAASLINYFAQPQAQAVIERLKAAGVNMEYKGVRVEAGADLPFS 597
Query: 595 -----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
L T+ GGKV + +SK T+ ++ G+K G KLEKA KL + +
Sbjct: 598 GKTIVLTGTLTQMSRQEAEEAIVRLGGKVTSSVSKKTDLVIAGEKAGSKLEKAEKLGVAV 657
Query: 637 LDEKNFVKIVK 647
+DE F++I+K
Sbjct: 658 MDEAGFLEILK 668
>gi|90408119|ref|ZP_01216289.1| DNA ligase [Psychromonas sp. CNPT3]
gi|90310805|gb|EAS38920.1| DNA ligase [Psychromonas sp. CNPT3]
Length = 667
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 260/666 (39%), Positives = 391/666 (58%), Gaps = 37/666 (5%)
Query: 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG 73
++ +V +L ++L +N YY+ D P ISD +YD + +LK IE ++P LL ++S TQ VG
Sbjct: 3 IALQVKKLTEQLEEYNYQYYVLDEPSISDAQYDAVFQQLKAIESEHPHLLHENSPTQKVG 62
Query: 74 LVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNL 133
+ V H M+SLDN F+DE + F +R ++ K K + + E K DG+AV++
Sbjct: 63 GQALSKFEQVAHEMPMLSLDNMFNDEALQAFIQRASD--KSIKEVAFCIEPKLDGLAVSI 120
Query: 134 RYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIK 193
YE+G L QA+TRGDG+ GEN+T N+ I IPL L P+ LEVR EV + + F K
Sbjct: 121 IYEHGLLVQAATRGDGHTGENVTANVKTISNIPLRLRGDNIPQRLEVRGEVFMPQLGFDK 180
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253
LN LG K F NPRNAAAG LRQL+ KI ++ L F+ + VG G ++ +S +
Sbjct: 181 LNARLEALGEKSFVNPRNAAAGSLRQLDSKIAASRPLAFYCYAVGVFDG-DLENSQYARM 239
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
+ GL + E S + G++ + +Y+ I +R +L Y IDGVVYK++ + Q KLGF
Sbjct: 240 QQLKGWGLPVSSEISRVQGLDACLAYYRNIVTQRESLGYAIDGVVYKVDDIDLQDKLGFV 299
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
+RAPR+A AYKF ++EA+T+++ + Q+GRTG ITPVA L+PV + G+T++ ATLHN+ E
Sbjct: 300 ARAPRWASAYKFAAEEAITRVENVEFQVGRTGAITPVAKLRPVFVGGVTVSNATLHNQDE 359
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRP-NDSKIFKIPNICPICNSKIIYIESNL 432
I R I IGD VVV R+G+VIP++ +L R + ++ P++CP+C+S + I
Sbjct: 360 IARLGILIGDDVVVRRAGDVIPQVARVLLENRDLSQTQEIHFPSVCPVCSSALERIVGEA 419
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
RC+G + C AQRK ++HF+SRKA++I GLG K++ LV+ +++ L+ +
Sbjct: 420 TIRCTGG-LYCAAQRKEAIKHFASRKALDIDGLGNKLVALLVDHDLIKDPAQLFDLTLAQ 478
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
+ L R+ + A +L ++Q SK TT SRF+YALGIR VGE TA LA ++KNL + A
Sbjct: 479 ISTLPRMGSVSAKKVLNSLQVSKKTTLSRFLYALGIREVGEATANNLAMHYKNLSALQDA 538
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------ 594
E L + +G K F QP + ++++L + G++W
Sbjct: 539 GIEALKEVADVGDIVAKNIYYFFRQPSNLQVVNRLLEAGVHWPDIQAVESTTQTLVGQTF 598
Query: 595 --------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
++ + K G KV +SK TN L+ G G KLEKA L+I I+DE+
Sbjct: 599 VITGSFANISRSDIKSELQALGAKVSGSVSKKTNTLIAGTAAGSKLEKAQALDINIMDEQ 658
Query: 641 NFVKIV 646
++
Sbjct: 659 QLFTLL 664
>gi|433547165|ref|ZP_20503437.1| NAD-dependent DNA ligase [Brevibacillus agri BAB-2500]
gi|432181550|gb|ELK39179.1| NAD-dependent DNA ligase [Brevibacillus agri BAB-2500]
Length = 668
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 263/671 (39%), Positives = 396/671 (59%), Gaps = 51/671 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ EL K + RHN YY D P I+D +YDQL+ EL ++E ++PEL + DS TQ VG
Sbjct: 9 KIKELAKRIERHNRLYYEEDRPEITDQEYDQLMRELIELETQFPELASPDSPTQRVG--- 65
Query: 77 GEN----SKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
GE K VH T M+SL N F + D+ F++R+ + ++ + Y+AELK DG+AV+
Sbjct: 66 GEPLPFFEKVVHKT-PMLSLGNAFGEADIRDFDRRVRQAVG-SQAVRYVAELKIDGLAVS 123
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
L YE G + +TRGDG IGE+IT N+ I IPL L P LEVR E + K F
Sbjct: 124 LHYENGVFVRGATRGDGTIGEDITQNLKTIRSIPLRLT---RPLTLEVRGEAYMPKAAFE 180
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
KLN+ R G F NPRN+AAG LRQL+PKI ++ L F +G+GEL G + SHSE
Sbjct: 181 KLNREREERGEPLFANPRNSAAGSLRQLDPKIAASRQLDIFIYGIGELHGETV-ESHSEG 239
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
L+ + +G + E V V +L+ F + KR +LPYEIDG+V K++ + Q++LG+
Sbjct: 240 LDLLESLGFKVNKERRVFEDVGELLAFIESWTQKRPSLPYEIDGMVIKVDSYAQQEELGY 299
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
T+++PR+A+AYKF ++EA+T ++ I + +GRTG +TP ALLKPV + G T+ RA+LHNE
Sbjct: 300 TAKSPRWAIAYKFPAEEAITILEGIEVSVGRTGSVTPTALLKPVSLAGTTVKRASLHNED 359
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
I K + IGD VVV ++G++IP+I + + R + F +P CP C S+++ +E +
Sbjct: 360 IIREKGLLIGDHVVVKKAGDIIPEIIAVLPERRTGNETPFAMPTHCPECGSELVRLEEEV 419
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
RC C A + G+ HF SR AMNI GLG+K++ +L I+ + DLY ++ +
Sbjct: 420 ALRCINPM--CPALIREGMIHFVSRTAMNIDGLGEKVVAQLYRDGIIHSVADLYYLHQQR 477
Query: 493 --LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
LL ++R+ K +N+L AI+ SK + R ++ LGIR VG A+ LA +F +++ +
Sbjct: 478 DVLLGMERMGEKSVDNLLAAIEASKENSLERVLFGLGIRLVGAKAARVLAEHFGHMDAIM 537
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+EE+L I +IG + I + QP + +I +L+ G+
Sbjct: 538 QASEEELTQINEIGPKMAASLINYFAQPQAQAVIERLKAAGVNMEYKGVRVEAGADLPFS 597
Query: 595 -----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
L T+ GGKV + +SK T+ ++ G+K G KLEKA KL + +
Sbjct: 598 GKTIVLTGTLTQMSRQEAEEAIVRLGGKVTSSVSKKTDLVIAGEKAGSKLEKAEKLGVAV 657
Query: 637 LDEKNFVKIVK 647
+DE F++I+K
Sbjct: 658 MDEAGFLEILK 668
>gi|423197679|ref|ZP_17184262.1| DNA ligase [Aeromonas hydrophila SSU]
gi|404631367|gb|EKB28003.1| DNA ligase [Aeromonas hydrophila SSU]
Length = 668
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 263/670 (39%), Positives = 380/670 (56%), Gaps = 34/670 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S + R +L + L + YY+ DNP + D +YD+L+ EL +E +PEL T S +
Sbjct: 1 MSDILSRHRQLCELLTEYGHQYYVLDNPTVPDAEYDRLMRELIALEADHPELKTPASPSV 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG K V H M+SLDN FS E++ F +R+ + LK N + E K DG+A
Sbjct: 61 RVGGQPLTAFKQVRHEIPMLSLDNVFSSEELQAFEQRMGDRLKREVNFTFCCEPKLDGLA 120
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V+L Y G L QA+TRGDG GE IT N+ I IPL L + P LEVR EV + K
Sbjct: 121 VSLLYVDGQLVQAATRGDGTTGEEITENVRTIKAIPLTLRGEGWPARLEVRGEVFMPKAG 180
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F +N G K F NPRNAAAG LRQL+ +I ++ L F+A+GVG + SH
Sbjct: 181 FEAMNARALAAGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYGVGVGGELLG-DSHY 239
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
L GL + E + G F+ I +R LPYEIDGVVYK++ + Q++L
Sbjct: 240 GRLTRLNAWGLPLSPEVKLKEGAAGCQAFHDDILARRGALPYEIDGVVYKVDAIPLQEEL 299
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A A+KF ++E +T ++ + Q+GRTG +TPVA LKPV + G+T++ ATLHN
Sbjct: 300 GFVARAPRWATAHKFPAQEEMTLLENVEFQVGRTGAVTPVAKLKPVFVGGVTVSNATLHN 359
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R + IGDTV+V R+G+VIP+I + + + RP+D++ P CP+C S + +E
Sbjct: 360 ADEIERLGVMIGDTVIVRRAGDVIPQIVAVVEAQRPSDAREILFPTECPVCGSAVERLEG 419
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ RCSG C AQRK ++HF++R+AM++ GLG K++E+LV+ +V T DL+ +N
Sbjct: 420 EAVTRCSGGLF-CEAQRKEAIKHFAARRAMDVDGLGDKIVEQLVDKGLVKTPADLFGLNA 478
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ K A N++ AI ++ TT RF++ALGIR VGE TA LAN+F L+ +
Sbjct: 479 IQLAGLERMGQKSALNLVAAIDAARSTTLPRFLFALGIREVGEATALNLANHFLTLDALR 538
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
A+ EQLL++ +G K F+ QP + ++ L GI+W
Sbjct: 539 AASVEQLLDVADVGDVVAKHVYYFLRQPHNIEVLEALLAAGIHWPAIEKKEASDQPFAGK 598
Query: 595 ----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
L+ + K G KV +S T+ LV G+ G KL KA +L I +
Sbjct: 599 TFVLTGTLTTLSRNDAKAALQALGAKVAGSVSAKTDVLVAGEAAGSKLAKAQELGITVWT 658
Query: 639 EKNFVKIVKG 648
E+ + ++G
Sbjct: 659 EEELQQALQG 668
>gi|194366356|ref|YP_002028966.1| NAD-dependent DNA ligase LigA [Stenotrophomonas maltophilia R551-3]
gi|254781422|sp|B4SP88.1|DNLJ_STRM5 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|194349160|gb|ACF52283.1| DNA ligase, NAD-dependent [Stenotrophomonas maltophilia R551-3]
Length = 821
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 257/700 (36%), Positives = 387/700 (55%), Gaps = 66/700 (9%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R +L++++ + N AY+ D P I D YD+++ EL+ +E ++PEL DS TQ VG
Sbjct: 8 RAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADSPTQQVGARP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SL N FSDE+V F +RI L +++++ AE K DG+A++LRYE
Sbjct: 68 SGRFAEVRHAVPMLSLSNAFSDEEVADFVRRIDERLG-RRSLQFSAEPKMDGLAISLRYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G+ +TRGDG+ GE++T N+ I IP LN K P++LEVR EV + + DF N+
Sbjct: 127 EGHFVLGATRGDGSTGEDVTANLREIGDIPKRLNGKDWPDVLEVRGEVYMARADFEAYNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K NPRNAAAG LRQL+PKI+ + L FFA+G GE++G +P +HS L
Sbjct: 187 RARLQGGKVLANPRNAAAGSLRQLDPKISAQRKLSFFAYGTGEVQGGELPDTHSGTLAQL 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
G + V+ G + L+ +Y+ I +R LP++IDGVVYK++ + Q+ +GF SRA
Sbjct: 247 GSWGFPVSALCRVVDGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDDRAGQQAMGFVSRA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E T ++AI IQIGRTG TPVA L PV + G+ ++ ATLHN +I R
Sbjct: 307 PRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLHNADQIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++++GD+V+V R+G+VIP++ S IL RP + +++P CP+C S+I+ E RC
Sbjct: 367 LDVRVGDSVIVRRAGDVIPEVVSVILDRRPQGTTPWQMPTQCPVCGSEIVREEGAAAWRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL--- 493
SG + C AQRK + HF+SR+AM+I GLG K IE LV+A IV DLY+++ L
Sbjct: 427 SGE-LSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIVKGVADLYRLSRDQLLHL 485
Query: 494 --------------------------------LRLD----------------------RV 499
L+LD ++
Sbjct: 486 KLVLDAEDPSALAAALKLHLPAEGSGAVLNAVLKLDGNDPGWRAQALVQPASFEWNTKKI 545
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
+ K A+N++ AI S+ T R ++ALGI HVGE+TAK LA +F +LE +
Sbjct: 546 ATKWADNLIAAIDASRAATLERLLFALGIEHVGESTAKALAQWFGDLELIRHLPWPLFKR 605
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGGKVVNFISKNTNYLVKG 619
+P IG ++ F Q ++ I L VG +++ + K+ + LV+
Sbjct: 606 VPDIGGEVARSLGHFFEQQGNQQAIDDLLQVGQVRISDAHAPSAKLREGLDL-AQLLVES 664
Query: 620 QKPG------KKLEKAIKLNIKILDEKNFVKIVKGFSTET 653
+ PG +KL A+ +LD ++ + G +T
Sbjct: 665 EIPGITRLRAEKLVAALPSAQAVLDAEHGQFVNAGLPDDT 704
>gi|392411210|ref|YP_006447817.1| DNA ligase, NAD-dependent [Desulfomonile tiedjei DSM 6799]
gi|390624346|gb|AFM25553.1| DNA ligase, NAD-dependent [Desulfomonile tiedjei DSM 6799]
Length = 678
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 251/666 (37%), Positives = 386/666 (57%), Gaps = 36/666 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
V L+K + H+ YY+ D+P I+D +YD+L L+ +E +YPEL+T DS TQ VG
Sbjct: 16 VEALRKTIRDHDFNYYVLDSPEITDAEYDKLFRRLQDLETQYPELITPDSPTQRVGGKPL 75
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
E V H M+SL N F + +++ F+ R L + Y+ E K DG+AV L YE
Sbjct: 76 EKFGQVRHAIPMVSLSNIFDESELLEFDVRTKRSLGTGNELSYVVEPKLDGVAVELIYEN 135
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G+L A+TRGDG GE++T N+ I IPL L + LLEVR E+L+ + DF +LN+
Sbjct: 136 GFLSTAATRGDGFTGEDVTANVRTIKWIPLKLQTRASDALLEVRGEILMNRADFDRLNEK 195
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQ 257
R G F NPRNAAAG +RQL+P+I ++ L F AHGVG + G ++P + +L Q
Sbjct: 196 REKRGFATFANPRNAAAGSIRQLDPRITASRNLRFIAHGVGRIEG-SIPETQYGILEKLQ 254
Query: 258 KIGLSI-CGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+GL + G + + +++E Y+ + R LPYEIDG V KIN L Q LG T+R+
Sbjct: 255 SLGLPVNMGLTRLCENIQQVLEHYRYLRENRDTLPYEIDGAVLKINSLDEQAILGMTARS 314
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF T+I I + +GRTG +TPVA+++PV + G+T++RA+LHN+ E+ R
Sbjct: 315 PRWAVAFKFQPLRTSTQILRIEVGVGRTGTLTPVAIMEPVSVGGVTVSRASLHNQDEVDR 374
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+++ GD VV+ R+G+VIP++ + LRP DS+ + IP+ CP+C S + + RC
Sbjct: 375 KDVREGDMVVIQRAGDVIPEVVEVLKDLRPADSRPYTIPDNCPVCGSSAVRLPGQAAKRC 434
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+ C A+ K ++HF+SR AM+I GLG K+IE+LV+ V DLY ++ + + L
Sbjct: 435 VNAT--CPARLKETIRHFASRNAMDIEGLGVKLIEQLVDLGHVKNPADLYYLSKETIKSL 492
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+++K A+NI+ +I++SK T RF+Y+LG+ VGE AK L F ++ + +
Sbjct: 493 ERMADKSASNIVASIERSKTVTSDRFLYSLGLPLVGEHVAKILMTAFPDVATLSEQDTTA 552
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI--YWLNNPN--------------- 599
L I IG ++ + ++ +P +R +I +L G+ L P+
Sbjct: 553 LQQIHGIGPEVAQSVVSYLREPHNRDMIHRLLSAGVNPEPLARPSDKIQTVLTGKTVVFT 612
Query: 600 ---------------TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
T GG V +S+ T+Y+V G + G KL+KA L + +L E F
Sbjct: 613 GTLSLPRSEAKKLVETAGGTVSGSVSRKTDYVVAGDEAGSKLDKARGLGVTVLSEDEFRS 672
Query: 645 IVKGFS 650
+V+ S
Sbjct: 673 LVEAAS 678
>gi|344208000|ref|YP_004793141.1| DNA ligase [Stenotrophomonas maltophilia JV3]
gi|343779362|gb|AEM51915.1| DNA ligase [Stenotrophomonas maltophilia JV3]
Length = 821
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 256/700 (36%), Positives = 387/700 (55%), Gaps = 66/700 (9%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R +L++++ + N AY+ D P I D YD+++ EL+ +E ++PEL DS TQ VG
Sbjct: 8 RAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADSPTQQVGARP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SL N FSDE+V F +RI L +++ + AE K DG+A++LRYE
Sbjct: 68 SGRFPEVRHAVPMLSLSNAFSDEEVADFVRRIDERLG-RRSLRFSAEPKMDGLAISLRYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G+ +TRGDG+ GE++T N+ I +P L+ K P++LEVR EV + + DF N+
Sbjct: 127 DGHFALGATRGDGSTGEDVTANLREIGDVPKRLHGKDWPDVLEVRGEVYMARADFEAYNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K NPRNAAAG LRQL+PKI+ + L FFA+G GE++G +P +HS L
Sbjct: 187 RARQQGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGGELPDTHSGTLAQL 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
G + V+ G + L+ +Y+ I +R LP++IDGVVYK++ + Q+ +GF SRA
Sbjct: 247 GAWGFPVSELCKVVEGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDDRAGQQAMGFVSRA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E T ++AI IQIGRTG TPVA L PV + G+ ++ ATLHN +I R
Sbjct: 307 PRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLHNADQIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++++GD+V+V R+G+VIP++ S IL RP + +++P CP+C S+I+ E RC
Sbjct: 367 LDVRVGDSVIVRRAGDVIPEVVSVILDRRPQGTTPWQMPTRCPVCGSEIVREEGAAAWRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL--- 493
SG + C AQRK + HF+SR+AM+I GLG K IE LV+A IV + DLY++N L
Sbjct: 427 SGE-LSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIVRSVADLYRLNRDQLLHL 485
Query: 494 --------------------------------LRLD----------------------RV 499
L+LD ++
Sbjct: 486 KLVLDAEDPSALAAALKLHLPAEGSGAVLNAVLKLDGNDPAWRAQALAQPASFEWNTKKI 545
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
+ K A+N++ AI S+ T R ++ALGI HVGE+TAK LA +F +LE +
Sbjct: 546 ATKWADNLIAAIDASRAATLERLLFALGIEHVGESTAKALAQWFGDLELIRHLPWPLFKR 605
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGGKVVNFISKNTNYLVKG 619
+P IG ++ F Q ++ I L VG +++ + K+ + LV+
Sbjct: 606 VPDIGGEVARSLGHFFEQQGNQQAIDDLLQVGQVRISDVHAPSAKLREGLDL-AQLLVES 664
Query: 620 QKPG------KKLEKAIKLNIKILDEKNFVKIVKGFSTET 653
+ PG +KL A+ +LD ++ + G +T
Sbjct: 665 EIPGITRLRAEKLVAALPGAQAVLDAEHGQFVNAGLPDDT 704
>gi|423721414|ref|ZP_17695596.1| DNA ligase, NAD-dependent [Geobacillus thermoglucosidans
TNO-09.020]
gi|383365785|gb|EID43078.1| DNA ligase, NAD-dependent [Geobacillus thermoglucosidans
TNO-09.020]
Length = 670
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 249/667 (37%), Positives = 400/667 (59%), Gaps = 44/667 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL++ L+++N YY+ D P + D++YD+L+ EL +EE+YP+L TKDS +Q VG
Sbjct: 9 RIEELRELLNQYNYEYYVLDRPSVPDSEYDRLMQELIALEEQYPDLKTKDSPSQRVGGQA 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SL N F++ D+ F++R+ E+ ++ Y+ ELK DG+AV++RYE
Sbjct: 69 LDAFQKVEHRTPMLSLANAFNEGDLRDFDRRVRQEV--GDDVAYVCELKIDGLAVSVRYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
GY Q +TRGDG GE+IT N+ I +PL LN P LE R E + K F +LN+
Sbjct: 127 DGYFVQGATRGDGVTGEDITENLKTIRSLPLRLN---EPVTLEARGEAYMPKASFERLNE 183
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G + F NPRNAAAG LRQL+PKI ++ L F +G+ + + +SHS L++
Sbjct: 184 QRRQRGEELFANPRNAAAGSLRQLDPKIAASRHLDLFVYGLANAEELGI-ASHSAALDYL 242
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
Q++G E + ++++++F + KR LPYEIDG+V K++ + Q++LG T+++
Sbjct: 243 QQLGFKTNPERRRCANMDEVMQFVNEWQEKRPQLPYEIDGIVIKVDSFAQQEQLGATAKS 302
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +TK+ I + +GRTG++TP A+L+PV + G T+ RATLHNE I
Sbjct: 303 PRWAIAYKFPAEEVVTKLIDIELNVGRTGVVTPTAILEPVRVAGTTVQRATLHNEDFIRE 362
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD+V++ ++G++IP++ + + R + F +P CP C S+++ +E + RC
Sbjct: 363 KDIRIGDSVIIKKAGDIIPEVVNVVPDRRTGEEVPFVMPTHCPECASELVRLEGEVALRC 422
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+C AQ + GL HF SR+AMNI GLG+K+I +L ++ D+Y++ L+ L
Sbjct: 423 INP--KCPAQIREGLIHFVSRQAMNIEGLGEKVISQLFREGLIHDVADIYRLTKDQLIDL 480
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N+L AI+ SK + R ++ LGIRHVG AK LA +F+ ++ + AT+E+
Sbjct: 481 ERMGEKSATNLLHAIEASKQNSLERLLFGLGIRHVGAKAAKVLAEHFETMDRLQNATKEE 540
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI-YWLNNPNTK-------------- 601
L+ I +IG + + + +P + L+++LR G+ P T
Sbjct: 541 LMAIHEIGEKMADSIVTYFAKPEVKELLNELRAYGVNMEYKGPKTPKPGDVHSYFAGKTV 600
Query: 602 ---------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
GGKV +SKNT+ ++ G G KL KA +L+I+I DE
Sbjct: 601 VLTGKLESLSRNEAKEKIEQLGGKVTGSVSKNTDLVIAGADAGSKLAKAQQLHIEIWDET 660
Query: 641 NFVKIVK 647
F++ ++
Sbjct: 661 RFLEEIE 667
>gi|258510685|ref|YP_003184119.1| NAD-dependent DNA ligase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257477411|gb|ACV57730.1| DNA ligase, NAD-dependent [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 684
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 247/686 (36%), Positives = 397/686 (57%), Gaps = 57/686 (8%)
Query: 5 AKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLT 64
AK ++ + R L++++ HN YYL DNP ISD ++D L+ +L ++E KYPEL+
Sbjct: 6 AKSALSLEEARARAKVLREQIEYHNRKYYLEDNPEISDAEWDALMRDLIELERKYPELVD 65
Query: 65 KDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAEL 124
S TQ VG E V H M+SL N +S ED++ +++R+ + ++ Y+ EL
Sbjct: 66 PASPTQRVGAPALEGFAKVVHEVPMLSLANAYSTEDLLDWDRRVRQ--AVGDDVRYVCEL 123
Query: 125 KFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEV 184
K DG+AV LRY+ G L +TRGDG++GE+IT NI I +PL L+ P LEVR E
Sbjct: 124 KVDGLAVALRYQDGRLVLGATRGDGSVGEDITANIRTIRNVPLELS---EPVSLEVRGEA 180
Query: 185 LIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGV--GELRG 242
+ K++F++LN+ R G F NPRNAAAG LRQL+P + ++ L + + E G
Sbjct: 181 YMPKREFMRLNELREQQGEPLFANPRNAAAGSLRQLDPAVAASRRLGVIVYQLVRAEAHG 240
Query: 243 MNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKIN 302
+HS+ L++ ++GL E V + + +I + + KR LPY DG+V K++
Sbjct: 241 CE---THSQALDYVARLGLPAHRERHVCANIEDVIAYIEAWADKRHELPYATDGMVVKVD 297
Query: 303 CLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGIT 362
L+ Q +LG T+++PR+A+AYK+ +++A T ++AI + +GRTG++TP A+ PV + G T
Sbjct: 298 SLALQARLGATAKSPRWAIAYKYAAEQAETTLRAIELNVGRTGVVTPTAVFDPVQLAGTT 357
Query: 363 ITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICN 422
++RA+LHNE + K+I++GD +VV ++G++IP++ S+ R F++P CP C
Sbjct: 358 VSRASLHNEDLVREKDIRVGDVIVVQKAGDIIPEVIRSLPERRTEPLPEFRMPETCPQCG 417
Query: 423 SKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482
S+++ ++ + RC +C A + GL HF SR AMNI GLG++ I L++ +V T
Sbjct: 418 SRLVRLDGEVAWRCINP--DCPALLREGLIHFCSRDAMNIEGLGEQWITVLLDRGLVRTH 475
Query: 483 VDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY 542
DLY++ +L++LDR+ +KLA+ +L IQ+SK + R ++ LGIRHVGE AK LA +
Sbjct: 476 ADLYRLRKADLVQLDRMGDKLADKLLHNIQESKRNSLERLLFGLGIRHVGEKAAKTLAEH 535
Query: 543 FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI---------- 592
F ++ + A+EE L+ +P IG ++ ++ + P R LI +L+D+G+
Sbjct: 536 FVTIDALMSASEEDLMAVPDIGPKVAQSIRQYFDTPRVRQLIQELKDLGVNMTYLGPQKV 595
Query: 593 -------------------------YWLNNPNTKGGKVVNFISKNTNYLVKGQKPGKKLE 627
W+ GGKV + +S T+ L+ G K G KL
Sbjct: 596 SDGPLAGKTVVLTGVLQAADRKQATAWIEQ---MGGKVASSVSAKTDVLIAGDKAGSKLA 652
Query: 628 KAIKL-------NIKILDEKNFVKIV 646
KA ++ ++I DE F+++V
Sbjct: 653 KAQEILRNHPDAKLEIWDEAAFLRLV 678
>gi|244538930|dbj|BAH82973.1| NAD-dependent DNA ligase LigA [Candidatus Ishikawaella capsulata
Mpkobe]
Length = 683
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 278/676 (41%), Positives = 414/676 (61%), Gaps = 39/676 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV +L+ L H YY+ D P ISD KYD LL EL ++E++YP+L+ DS TQ +G
Sbjct: 7 RVNKLRFILRYHAHLYYVMDAPKISDAKYDSLLLELHELEKQYPQLIHPDSPTQRIGDKP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNI-EYIAELKFDGIAVNLRY 135
K V H+ M+SLDN F+ ED FN RI + + +I ++ E+KFDG+AV++ Y
Sbjct: 67 VMLFKQVTHSIPMLSLDNVFNKEDYKKFNTRIQKFFQKSNSIIKFCCEMKFDGLAVSIIY 126
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
E G L +A+TRGDGN GE+IT N+ I IP+ L P LL++R E+++ + K+N
Sbjct: 127 ENGVLVRAATRGDGNYGEDITKNVRTIRAIPIYLQGNNLPRLLDIRGEIIMMQDGLKKIN 186
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN-MPSSHSELLN 254
+G K FTNPRNAAAG LRQL+P + + L+FF + G + G + +P+SH + L
Sbjct: 187 SEANKIGGKIFTNPRNAAAGSLRQLDPSVAAKRPLNFFCYSAGFIEGYSKLPNSHWKQLQ 246
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
++ GL I SV++ + ++ FY KI +R NL ++IDG+V K++ + Q ++G++
Sbjct: 247 LFKSWGLPIHENISVVNNIEEVFSFYDKIKQERINLGFDIDGIVIKVDSIELQNQIGYSI 306
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+A+KF ++E ++ + ++ QIGRTG+ITPVA LKPV I G+TI+ LHNE+EI
Sbjct: 307 RAPRWAIAFKFPAQEEISTVLKVDFQIGRTGVITPVARLKPVKIAGVTISNVNLHNENEI 366
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
R + IGD VV+ RSG+VIPKI S + + + + P CPIC S + IE I+
Sbjct: 367 KRLGLSIGDKVVIRRSGDVIPKIISVLKNYKTINRNNILFPEHCPICGSTVERIEGKSIS 426
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+GS I C +QRK L+HF+SR AMNI GLG K+I+ L+ N + T+ D +++ NL+
Sbjct: 427 RCTGSLI-CKSQRKEMLKHFASRSAMNIEGLGDKIIDALIQKNFLKTSFDFFQLTIANLI 485
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
+DR+SNKLA ++ +I+KSK TT +RFIYALGIR VGE TA L N+F +L+ + AT
Sbjct: 486 TIDRISNKLAKKLINSIEKSKKTTLARFIYALGIREVGEATANNLTNHFGSLKNIMDATF 545
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQL-RDVGIYW----------LNNPNTK-- 601
+L I IG+ + K F+++ +R++I QL ++ G+YW +NN K
Sbjct: 546 NELSAIKNIGNISAKYIYNFMHEKNNRMVIDQLIQEAGVYWPTVNFSKINKINNLIFKKT 605
Query: 602 ----------------------GGKVVNFISKNTNYLVKGQKPG-KKLEKAIKLNIKILD 638
G K+ N ISK ++ L+ G+ P K+++A KL IK++D
Sbjct: 606 IVLTGSFIKIQRKELKYRIILLGAKINNNISKKSDLLIYGKNPSYNKIQQAQKLGIKMID 665
Query: 639 EKNFVKIVKGFSTETK 654
E K + + + K
Sbjct: 666 ETEVFKFLLQYDIDFK 681
>gi|229917963|ref|YP_002886609.1| NAD-dependent DNA ligase [Exiguobacterium sp. AT1b]
gi|229469392|gb|ACQ71164.1| DNA ligase, NAD-dependent [Exiguobacterium sp. AT1b]
Length = 664
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 256/669 (38%), Positives = 396/669 (59%), Gaps = 43/669 (6%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
+++ RV EL++ L+++ YY+ D P + D++YD+L+ EL +IE YPEL T DS TQ V
Sbjct: 2 EMAERVEELRQTLNQYGYEYYVLDRPSVPDSEYDRLMNELIQIETDYPELRTPDSPTQRV 61
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
G + V H M+SL N FS E+++ + +RI +L T ++AELKFDG+AV+
Sbjct: 62 GGAPLDAFVKVTHDTPMLSLGNVFSKEELVEWVERIEKDLGYTPT--FVAELKFDGLAVS 119
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
L+YE G L + +TRGDG GE+IT N+ I IPL LN EVR E + K+ F
Sbjct: 120 LKYENGRLVRGATRGDGTTGEDITQNLKTIRSIPLRLNEDV---TFEVRGEAYMPKRSFE 176
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
+LN R +G F NPRNAAAG LRQL+ KI ++ L FFA+G+ + ++ +SH E
Sbjct: 177 QLNDERERIGEPLFANPRNAAAGSLRQLDSKIAASRNLAFFAYGL--VSQDDLVASHDES 234
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
L++ +++G+++ G+Y+ ++L ++ + KR +LPYEIDG+V K+ Q++LGF
Sbjct: 235 LDYLKRLGVAVSGDYTTCQTADELWDYIETYVTKRSDLPYEIDGIVIKVAGYEEQEQLGF 294
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
T+++PR+A+AYKF ++E +T I+ ++ +GRTG +TP A PV + G T+T ATLHNE
Sbjct: 295 TAKSPRWAVAYKFPAEEVVTTIEDVDFSVGRTGKVTPRARFAPVSVAGSTVTYATLHNED 354
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
I K++ IGD VV+ ++G+VIP + S++ S R + ++ + P CP C S++I +E
Sbjct: 355 FIKEKDLHIGDRVVIKKAGDVIPAVVSALASERSGEERVIEFPTHCPACGSELIRLEGEA 414
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
RC EC AQ GL HF SR+AMNI GLG+K+I +L A +V DLY+++ +
Sbjct: 415 DHRCVNP--ECPAQLLEGLIHFVSRQAMNIDGLGEKVITQLHEAGLVHNVADLYRLDRDD 472
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LL L+R+ N+L AI++SK + R ++ALGIR VG+ A +A F+ ++ + A
Sbjct: 473 LLGLERMGETSVTNLLSAIEQSKQNSLERVLFALGIRLVGQKAASLIAERFETMDAIIAA 532
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI----YWLNNPNTK------- 601
T E+L +I IG+ ++ + + +P R L+ +L + G+ + P T+
Sbjct: 533 TVEELTSIDGIGTKMAESIVLYFEKPEARELVKELAESGVNLSFKGMKRPTTEGAPLSGK 592
Query: 602 -----------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
G V +SKNT+ LV G+K G KL KA L I++ D
Sbjct: 593 TVVLTGKLHEMTRGEAGKQLELLGASVTGSVSKNTDLLVAGEKAGSKLAKAESLGIEVWD 652
Query: 639 EKNFVKIVK 647
E + +K
Sbjct: 653 EAKLLDFLK 661
>gi|85859410|ref|YP_461612.1| NAD-dependent DNA ligase [Syntrophus aciditrophicus SB]
gi|123738818|sp|Q2LTN8.1|DNLJ_SYNAS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|85722501|gb|ABC77444.1| NAD-dependent DNA ligase [Syntrophus aciditrophicus SB]
Length = 672
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 255/662 (38%), Positives = 389/662 (58%), Gaps = 36/662 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ +LK + HN YY D+P ISD +YD LL EL +E+++P+ LT+DS ++ +G
Sbjct: 11 IEDLKARIEYHNRRYYQLDDPEISDAEYDSLLQELIALEKQFPQWLTEDSPSRRIGAAPL 70
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
H M+SL N FS+E+++ F++R+ L ++ + ++ E K DG+AVNL Y
Sbjct: 71 SKFAPAVHLSPMLSLANAFSEEEILEFDRRLKRFLDSSERLSFVVEPKIDGVAVNLIYSS 130
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVL---NIKYPPELLEVRCEVLIYKKDFIKL 194
G L +TRGDG GE++T NI +H IPL + + + PE +E+R E+ + F KL
Sbjct: 131 GVLTTGATRGDGAKGEDVTQNIRTLHTIPLKIQNGSDERLPEQIEIRGEIYMETAAFRKL 190
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N+ R G F NPRNAAAG LRQL+ I + L F + VG +RG + H ++L+
Sbjct: 191 NERRLAAGEPPFANPRNAAAGSLRQLDASITARRPLKMFCYAVGIVRGRAF-TYHHDVLH 249
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
+K G S+ + G+ K IEFY+++ R LPYEIDG+V K++ LS Q +LG S
Sbjct: 250 ALKKWGFSVNPFIRQVEGIEKCIEFYRELQDLRNELPYEIDGMVIKVDDLSLQTRLGAVS 309
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R+PR+A+A KF + +A T I+ I + +GRTG +TPVAL+ PV + G+T++RATLHN+ EI
Sbjct: 310 RSPRWAVACKFAATQATTVIRDIIVNVGRTGTLTPVALMTPVKVGGVTVSRATLHNQDEI 369
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
+K+I+IGDTV+V R+G+VIP++ I+S R FKIP+ CP C S+++ +
Sbjct: 370 DKKDIRIGDTVLVQRAGDVIPEVVKVIVSNRSGREIPFKIPDTCPECGSEVVRLAGEAAH 429
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC G + C AQ + +QHF SR M+I GLG K++ +LVN ++ DLY ++ LL
Sbjct: 430 RCIG--LSCPAQLRRHIQHFVSRGGMDIEGLGDKLVSQLVNQKLIHDPADLYYLSHDALL 487
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
L+R++ K +N+L AI+ SK + + I+ALGIRHVGE +K LA F+ L+ + TE
Sbjct: 488 NLERMAEKSVSNLLSAIELSKHPSLDKIIFALGIRHVGEHISKILARRFRTLDALINTTE 547
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN--NPNTK----------- 601
+LL I IG + ++F +R +I +L+ G+ L +P +
Sbjct: 548 NELLAIRDIGPEVSSSILEFFRNASNRRVIEKLKKAGVSPLETISPRSAPLTGKTFVFTG 607
Query: 602 -----------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
GG+ ++K T+Y+V G+ G KL+KA K I IL E+ F++
Sbjct: 608 ALSRMTRDEAKQIVESLGGQAAGTVTKKTDYVVAGEAAGSKLQKAQKAGIAILSEEEFLR 667
Query: 645 IV 646
+
Sbjct: 668 LA 669
>gi|145298235|ref|YP_001141076.1| NAD-dependent DNA ligase [Aeromonas salmonicida subsp. salmonicida
A449]
gi|418361550|ref|ZP_12962203.1| NAD-dependent DNA ligase [Aeromonas salmonicida subsp. salmonicida
01-B526]
gi|166215387|sp|A4SKA6.1|DNLJ_AERS4 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|142851007|gb|ABO89328.1| NAD-dependent DNA ligase [Aeromonas salmonicida subsp. salmonicida
A449]
gi|356687276|gb|EHI51860.1| NAD-dependent DNA ligase [Aeromonas salmonicida subsp. salmonicida
01-B526]
Length = 664
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 259/643 (40%), Positives = 370/643 (57%), Gaps = 38/643 (5%)
Query: 32 YYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMS 91
YY+ DNP + D +YD+L+ EL IE ++PEL T S + VG + V H M+S
Sbjct: 22 YYVLDNPTVPDAEYDRLMRELIAIESEHPELKTSASPSVRVGGQPLTAFRQVRHEIPMLS 81
Query: 92 LDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNI 151
LDN FS E++ F +R+ + LK + + E K DG+AV+L Y G L QA+TRGDG
Sbjct: 82 LDNVFSSEELQAFEQRMKDRLKREISFTFCCEPKLDGLAVSLLYVDGQLVQAATRGDGAT 141
Query: 152 GENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRN 211
GE IT N+ I IPL L P LEVR EV + K F +N G K F NPRN
Sbjct: 142 GEEITENVRTIKAIPLSLRGSDWPARLEVRGEVFMPKAGFEAMNAKALAAGEKVFVNPRN 201
Query: 212 AAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVLS 271
AAAG LRQL+ +I ++ L+F+A+GVG + G + SH L + GL + E +
Sbjct: 202 AAAGSLRQLDSRITASRPLNFYAYGVG-VGGDQLGDSHFGRLCQLKAWGLPMSPEVKLKE 260
Query: 272 GVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEAL 331
G F+ I +R L YEIDGVVYK++ + Q++LGF +RAPR+A A+KF ++E +
Sbjct: 261 GAAGCQAFHDDILARRGELAYEIDGVVYKVDAIPLQEELGFVARAPRWATAHKFPAQEEM 320
Query: 332 TKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSG 391
T ++ + Q+GRTG +TPVA LKPV + G+TI+ ATLHN EI R + IGDTV+V R+G
Sbjct: 321 TLLENVEFQVGRTGAVTPVAKLKPVFVGGVTISNATLHNADEIERLGVMIGDTVIVRRAG 380
Query: 392 NVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGL 451
+VIP+I + + + RP D++ P CP+C S + +E ++ RCSG C AQRK +
Sbjct: 381 DVIPQIVAVVEAQRPVDAREILFPTQCPVCGSALERLEGEVVTRCSGGLF-CEAQRKEAI 439
Query: 452 QHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAI 511
+HF++R+AM++ GLG K++E+LV+ +V T DL+ +N L L+R+ K A N++ AI
Sbjct: 440 KHFAARRAMDVDGLGDKIVEQLVDKGLVKTPADLFSLNAIQLAGLERMGQKSALNLVAAI 499
Query: 512 QKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAF 571
++ TT RF++ALGIR VGE TA LAN+F L+ + A+ EQLL + +G K
Sbjct: 500 DAARSTTLPRFLFALGIREVGEATALNLANHFLTLDALRAASVEQLLEVADVGDIVAKHV 559
Query: 572 IKFINQPLHRLLISQLRDVGIYW--------------------------LNNPNTK---- 601
F+ QP H + ++ GI+W L+ + K
Sbjct: 560 YYFLRQP-HNI---EVLAAGIHWPAIEKKEASEQPFAGKTFVLTGTLNLLSRNDAKAALQ 615
Query: 602 --GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
G KV +S T+ LV G+ G KL KA +L I I E+
Sbjct: 616 ALGAKVAGSVSAKTDVLVAGEAAGSKLAKAQELGITIWTEEQL 658
>gi|402301024|ref|ZP_10820444.1| NAD-dependent DNA ligase LigA [Bacillus alcalophilus ATCC 27647]
gi|401723852|gb|EJS97275.1| NAD-dependent DNA ligase LigA [Bacillus alcalophilus ATCC 27647]
Length = 674
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 257/668 (38%), Positives = 395/668 (59%), Gaps = 52/668 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ EL++ L+ + YY+ DNP++SD +YDQ L +L ++EE++PEL+T DS T VG
Sbjct: 9 KINELREVLNEYGHHYYVLDNPVVSDAEYDQKLQQLIELEEQFPELITDDSPTVRVG--- 65
Query: 77 GENSKY---VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNL 133
G+ Y V H M+SL N FS++D+ F+KRI N +L ++ Y ELK DG+AV+L
Sbjct: 66 GDPLPYFEKVEHRTPMLSLGNAFSEQDLRDFDKRIRN--QLGDDVAYTCELKIDGLAVSL 123
Query: 134 RYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIK 193
YE G + +TRGDG IGE+IT N+ + IPL L +EVR E + K+ F+K
Sbjct: 124 TYENGRFVRGATRGDGTIGEDITNNLKTVQAIPLRLKEDV---TIEVRGEAYMPKQSFLK 180
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253
LN+ R G +KF NPRNAAAG LRQLNPKI + L F++ +G L + +SH E L
Sbjct: 181 LNEVREAEGEEKFANPRNAAAGSLRQLNPKIASKRNLSMFSYSIGYLENDEL-NSHFEAL 239
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
+ +G E ++ ++++IEF + KR LPYEIDG+V K++ + Q++LGFT
Sbjct: 240 QLIKNLGFKTNQETALCVSIDEVIEFVQSWLEKRQELPYEIDGIVIKLDSIEQQEQLGFT 299
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
+++PR+A+AYKF ++E +T ++ I + IGRTG++TP A+L PV++ G T+ RA+LHNE
Sbjct: 300 AKSPRWAIAYKFPAEEVVTTLREIELSIGRTGVVTPTAILDPVIVAGTTVKRASLHNEDL 359
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
I K++++GD+VV+ ++G++IP++ + + R + F +P CP C S+++ +E +
Sbjct: 360 IREKDLKLGDSVVIKKAGDIIPEVVNVLTDKRDGSEREFLMPTHCPECESELVRLEGEVA 419
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
RC +C AQ + GL HF SR AMNI GLG+K++ +L + ++ T DL+++N L
Sbjct: 420 LRCINP--QCPAQVREGLIHFVSRNAMNIDGLGEKVVAQLFSHKLIQTVADLFRLNRDEL 477
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
L L+R+ K +N+L AI+ SK + R ++ LGIR VG AK LA +F+ +E + A+
Sbjct: 478 LELERMGAKSVDNLLAAIEASKGNSLERLLFGLGIRFVGAKAAKTLAAHFETIEALQGAS 537
Query: 554 EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI-YWLNNPNTK----------- 601
EE LL I +IG + + QP LI QLR +G+ N P+
Sbjct: 538 EESLLTIDEIGEKMAGSIHSYFAQPEVTDLIEQLRSLGVNLTYNGPSVSRSEDVLEESPF 597
Query: 602 --------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIK 635
GGKV +SK T+ +V G++ G K KA +L +
Sbjct: 598 HQKTVVLTGKLEQLSRNEAKEKIEAYGGKVTGSVSKKTDLVVAGEEAGSKRTKAEQLGVL 657
Query: 636 ILDEKNFV 643
I DE+ +
Sbjct: 658 IWDEQQLM 665
>gi|225075650|ref|ZP_03718849.1| hypothetical protein NEIFLAOT_00666 [Neisseria flavescens
NRL30031/H210]
gi|224953072|gb|EEG34281.1| hypothetical protein NEIFLAOT_00666 [Neisseria flavescens
NRL30031/H210]
Length = 822
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 261/648 (40%), Positives = 371/648 (57%), Gaps = 74/648 (11%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ L L+R+ YY D P + D +YD+L EL+ +E +PEL DS TQ VG
Sbjct: 7 RIQYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQRVGGEP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDED---------VIIFNKRITNELKLTKNIEYIAELKFD 127
V H M+SL N FS +D + F++R+ L K EY+ E KFD
Sbjct: 67 LAGFNEVRHEIPMLSLTNAFSPQDENGVFDHTEMYAFDERVRGGLNGEKP-EYVIEPKFD 125
Query: 128 GIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIY 187
G+A++L Y G L QA+TRGDG GE++T N+ + IPL L+ + PEL+E+R EVL+
Sbjct: 126 GLAISLLYRDGVLTQAATRGDGTTGEDVTHNVKTVSNIPLRLHGENIPELIEIRGEVLML 185
Query: 188 KKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPS 247
K DF LNK + G K F NPRNAAAG LRQL+ +I + LHFF + + +G +
Sbjct: 186 KADFAALNKKQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQQGGFIAE 245
Query: 248 SHSELLNWYQKIGLSIC-GEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
H + LN+ +++G S+ G + +++++ FY+++ KR LPYEIDG+V K+N L+
Sbjct: 246 EHLQELNYCKELGFSLPDGNFGCFKNIDEVLAFYEQMQQKRPTLPYEIDGMVVKVNSLAQ 305
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q+KLGF SRAPR+A+A+KF ++EALT ++AI++QIGRTG +TPVA L+PV + G+T+T A
Sbjct: 306 QEKLGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNA 365
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDS----------------- 409
TLHN+ E+ RK++++GDTVVV R+G+VIP++ I RP
Sbjct: 366 TLHNQDEVSRKDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETNISVSDGLQDDLFAET 425
Query: 410 ----------KIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKA 459
K +++P CPIC S+I E +ARCSG + C AQR GL HF+SRKA
Sbjct: 426 PSETRSEPLHKPYRLPTHCPICRSEIEREEGEAVARCSGGML-CQAQRVQGLIHFASRKA 484
Query: 460 MNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL----DRVS--------------- 500
M+I GLG+K IE+LV ++V DLY+++ L ++ D+ S
Sbjct: 485 MDIDGLGQKQIEQLVAQDLVRHFADLYRLDIPTLQKMKETADKASINEEEPSNSEIEDFE 544
Query: 501 ----------------NKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFK 544
K A NIL I+ SK +RF++ALGIRHVGE TAK LA F
Sbjct: 545 GETGNTLLAKNNKKQPTKWAENILAGIEASKTPELARFLFALGIRHVGERTAKTLAQAFG 604
Query: 545 NLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI 592
LE + A E L +P IG+ ++ F Q + +I +L VGI
Sbjct: 605 TLEHVRHAPEPILACLPDIGTVVARSIAHFFAQEAQQAMIDELLAVGI 652
Score = 39.3 bits (90), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
GGKV +SK T+Y+V G+ G KLEKA L + +
Sbjct: 777 GGKVSGSVSKKTDYVVAGEAAGSKLEKAQALGVAV 811
>gi|197117724|ref|YP_002138151.1| NAD-dependent DNA ligase [Geobacter bemidjiensis Bem]
gi|254781337|sp|B5EIJ0.1|DNLJ_GEOBB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|197087084|gb|ACH38355.1| DNA ligase, NAD-dependent [Geobacter bemidjiensis Bem]
Length = 668
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 254/669 (37%), Positives = 389/669 (58%), Gaps = 47/669 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ L E+ RHN YY D P I+D +YD L ELK++E YP+L DS T VG G
Sbjct: 9 RIKWLSSEIERHNRLYYEQDMPEITDAEYDALFRELKELEASYPDLALPDSPTGRVG--G 66
Query: 77 GENSKY--VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT--KNIEYIAELKFDGIAVN 132
+K+ V HT M+SL+N F+++D++ F+ R+ L L+ + I Y+ E K DG+AV
Sbjct: 67 RPVAKFTQVRHTTPMLSLENAFTEKDIVDFDDRMKRFLGLSGAEEIGYVCEPKMDGVAVE 126
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
L Y G L STRGDG +GE +T N+ I IPL L + PP LL VR EV + + F
Sbjct: 127 LVYRDGLLAIGSTRGDGLVGEEVTQNLKTIKDIPLRLQTEEPPGLLTVRGEVYLPLEPFR 186
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
K N+ R G F NPRNAAAG LRQL+ KI + L F + GE+ G+ S S+
Sbjct: 187 KFNQEREEAGEPPFANPRNAAAGSLRQLDSKITAKRPLSIFCYAPGEVDGVAF-QSQSDF 245
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
L+ + + ++ GV ++++Y ++ KR +LPYEIDGVV K++ S Q+ LG
Sbjct: 246 LSTIPTWRIPVNPLTRLVPGVQGVLDYYNEMMEKRDDLPYEIDGVVVKVDRFSLQRDLGE 305
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
SR+PR+A+A+KF ++A T + I Q+GRTG+ITPVA L+PV + G+ ++RATLHN
Sbjct: 306 KSRSPRWAIAWKFPPRQATTVVNDIVPQVGRTGVITPVAHLEPVNVSGVMVSRATLHNWE 365
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
E+ RK+I+ GDTVVV R+G+VIP + ++ R + +P CP+C +++ I +
Sbjct: 366 EMERKDIRRGDTVVVERAGDVIPAVVQVLVEKRQGSETLLPVPQACPVCGGEVVRIPGEV 425
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
RC G + C AQ ++HF++R+AM+I GLG+K IE+L+N ++ D+Y++ ++
Sbjct: 426 AVRCVG--LNCPAQALERVKHFAARRAMDIDGLGEKFIEQLLNLKLIRNVADIYRLTEED 483
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
++ +R+ KLA N+L +I SK SR I+ALGIRHVGE TAK LA+ F ++E + A
Sbjct: 484 FMQFERMGKKLAENLLNSIAASKERELSRLIFALGIRHVGEHTAKLLASAFGSMENLAAA 543
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNT------------ 600
+EE+L +I ++G + F + ++ +L++ G+ NP
Sbjct: 544 SEEELTSIREVGPQVAASIADFFKSEENLEVLRELKEHGV----NPRVEEKRVGGRFTGK 599
Query: 601 ----------------------KGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
+GG +SK T+Y+V G G KL+KA +L +++L
Sbjct: 600 TFVFTGALEKFTRDEAKKMVELEGGHAAGSVSKKTDYVVAGADAGSKLDKAQQLGVRVLS 659
Query: 639 EKNFVKIVK 647
E +F+++++
Sbjct: 660 EDDFLELMQ 668
>gi|212638096|ref|YP_002314616.1| NAD-dependent DNA ligase LigA [Anoxybacillus flavithermus WK1]
gi|254781544|sp|B7GFV1.1|DNLJ_ANOFW RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|212559576|gb|ACJ32631.1| NAD-dependent DNA ligase [Anoxybacillus flavithermus WK1]
Length = 672
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 247/665 (37%), Positives = 397/665 (59%), Gaps = 43/665 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ EL++++ +HN AYY+ D P ISD +YD+L+ +L ++EE+YP+ T DS +Q VG
Sbjct: 12 QIAELREQIEKHNYAYYVLDQPSISDAEYDELMRKLMELEEQYPQYKTPDSPSQRVGGAP 71
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E + V H M+SL N F++ D+ F++R+ E+ ++ Y+ ELK DG+AV+LRYE
Sbjct: 72 LEAFRKVTHRVPMLSLSNAFNEGDLRDFDRRVRQEVG---DVRYVCELKIDGLAVSLRYE 128
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
GY Q +TRGDG GE+IT N+ I +PL L + +EVR E + +K F KLN+
Sbjct: 129 DGYFVQGATRGDGTTGEDITENLKTIRSLPLRLRQQV---TIEVRGEAYMPRKSFEKLNE 185
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G + F NPRNAAAG LRQL+PK+ ++ L FA+ V + + SHS LN+
Sbjct: 186 KRKMNGEELFANPRNAAAGSLRQLDPKVAASRQLDIFAYHVVNAEELGI-LSHSAALNYL 244
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++G V ++ ++ + ++ + +R +LPY+IDG+V K++ + QK+LG T+++
Sbjct: 245 DELGFKTNPARQVCETIDDVLSYIEQWHERRASLPYDIDGIVIKVDAFAQQKQLGATAKS 304
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T++ I + +GRTG++TP A+L+PV + G + RA+LHNE I
Sbjct: 305 PRWAIAYKFPAEEVVTQLVDIELSVGRTGVVTPTAILQPVRVAGTIVQRASLHNEDYIRE 364
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I++GD VV+ ++G++IP++ S+ R + F +P CP C S+++ ++ + RC
Sbjct: 365 KDIRLGDYVVIKKAGDIIPEVVCSLPERRTGKEEPFDMPTHCPACASELVRLDDEVALRC 424
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+C AQ + GL HF SR+AMNI GLG+K+I +L +V + DLY + L+ L
Sbjct: 425 VNP--QCPAQIREGLIHFVSRQAMNIDGLGEKVIAQLFEHRLVRSVADLYTLTKDELVAL 482
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N+L AI+ SK + R ++ LGIRHVG AK LA +F+ +E + +AT+E+
Sbjct: 483 ERMGEKSATNLLQAIEASKQNSLERLLFGLGIRHVGAKAAKTLAEHFETMERLQQATKEE 542
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI---------------------YWL 595
L+ I +IG + + + ++ + L+ +LR G+ + L
Sbjct: 543 LMAIHEIGEKMADSIVTYFSKEEVKQLLERLRAYGVNMTYKGAKQTIDISSTFAGKTFVL 602
Query: 596 NNP-------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
T GGKV +SK T+ +V G+ G KLEKA +L I I DE F
Sbjct: 603 TGTLQSMSRSEAKEKIETLGGKVTGSVSKKTDVVVVGEDAGSKLEKAKQLGITIWDEARF 662
Query: 643 VKIVK 647
++ ++
Sbjct: 663 LQEIQ 667
>gi|430375543|ref|ZP_19429946.1| NAD-dependent DNA ligase [Moraxella macacae 0408225]
gi|429540774|gb|ELA08802.1| NAD-dependent DNA ligase [Moraxella macacae 0408225]
Length = 667
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 268/659 (40%), Positives = 391/659 (59%), Gaps = 42/659 (6%)
Query: 24 ELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYV 83
+L HN AYY+ DNP ISD++YD+L +L ++E++ P L+ DS VG +
Sbjct: 14 QLKTHNHAYYVLDNPTISDDEYDRLRRQLIELEQQNPSLIQTDSPINQVGDKPLPFFSQI 73
Query: 84 HHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-KNIEYIAELKFDGIAVNLRYEYGYLKQ 142
HT M+SL N F+ ED+ F +R+ + L KN Y ELK DG+AV L YE G L Q
Sbjct: 74 THTIPMLSLGNVFNQEDLQNFMRRVNDRLADNQKNPTYEVELKLDGLAVALIYEKGILTQ 133
Query: 143 ASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLG 202
A TRGDG +GE+IT NI I +PL+L+ K E LE+R EVL+ K F KLN G
Sbjct: 134 AITRGDGQMGEDITQNIKTIRNLPLILDHKV--ERLEIRGEVLMPKAGFAKLNAQTQKNG 191
Query: 203 LKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM-NMPSSHSELLNWYQKIGL 261
K F NPRNAAAG LRQL+P I KN+ L F+A+ V ++G+ + + + L W +G
Sbjct: 192 EKTFANPRNAAAGSLRQLDPNIAKNRPLAFYAYSV--VQGLPDEIHTQFDALAWLNSLGF 249
Query: 262 SICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFAL 321
S+ + + + ++L ++Y + KR NLP+EIDG+V K+N L+ QK+LGF SR PR+A
Sbjct: 250 SLS-DVKLCNHADELHDYYLSVIEKRQNLPFEIDGLVIKVNDLNLQKQLGFLSREPRWAT 308
Query: 322 AYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQI 381
AYKF ++ +T++ AI Q+GRTG +TPV L PV I G+T++ ATLHN EI+R ++++
Sbjct: 309 AYKFPAQTVMTRLNAIEWQVGRTGQLTPVGKLDPVNIGGVTVSNATLHNIGEIHRLDVRV 368
Query: 382 GDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWI 441
GD V VHR+G+VIPK+T RP +S+ +P CP+CNS +I E +ARCSG +
Sbjct: 369 GDLVSVHRAGDVIPKVTRVWKDERPANSQTITLPTHCPVCNSPVILPEDEALARCSGG-L 427
Query: 442 ECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKNLLRLDRV 499
C AQ++ L HF SRKAM+I GLG++++ ++ D+Y + + L++L+++
Sbjct: 428 YCPAQQQEALIHFVSRKAMDIDGLGERLLIGFFAHGLIKNVADIYDLKNHASELIKLEKL 487
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
K NN+L AI+ SK TT RFIYALGIR VGE+TA LA F +L+ + +A + L
Sbjct: 488 GEKSVNNLLNAIEVSKKTTLPRFIYALGIRSVGESTALNLAKQFGDLDSLMQANIDALQK 547
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK------------------ 601
P +G+ T + + F +R +I +L G++W + +T
Sbjct: 548 TPDVGTITADSIVDFFQAEHNRKVIERLLQAGVHWDSMEHTDANNQPLDGQSWVITGTLT 607
Query: 602 --------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
G KV + +S T+ L+ G+K G K++KA L IKI+ E F+ I+
Sbjct: 608 SMGRDEAKAKLQALGAKVSSSVSAKTSALLAGEKAGSKIDKAQNLGIKIVTEAEFLAII 666
>gi|408821521|ref|ZP_11206411.1| NAD-dependent DNA ligase LigA [Pseudomonas geniculata N1]
Length = 821
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 256/700 (36%), Positives = 387/700 (55%), Gaps = 66/700 (9%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R +L++++ + N AY+ D P I D YD+++ EL+ +E ++PEL DS TQ VG
Sbjct: 8 RAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADSPTQQVGARP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SL N FSDE+V F +RI L +++ + AE K DG+A++LRYE
Sbjct: 68 SGRFPEVRHAVPMLSLSNAFSDEEVADFVRRIDERLG-RRSLRFSAEPKMDGLAISLRYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G+ +TRGDG+ GE++T N+ I IP L+ K P++LEVR EV + + DF N+
Sbjct: 127 EGHFVLGATRGDGSTGEDVTANLREIGDIPKRLHGKDWPDVLEVRGEVYMARADFEAYNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K NPRNAAAG LRQL+PKI+ + L FFA+G GE++G +P +HS L
Sbjct: 187 RARQHGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGGELPDTHSGTLAQL 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
G + V+ G + L+ +Y+ I +R LP++IDGVVYK++ + Q+ +GF SRA
Sbjct: 247 GTWGFPVSELCKVVDGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDDRAGQQAMGFVSRA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E T ++AI IQIGRTG TPVA L PV + G+ ++ ATLHN +I R
Sbjct: 307 PRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLHNADQIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++++GD+V+V R+G+VIP++ S IL RP + +++P CP+C S+I+ E RC
Sbjct: 367 LDVRVGDSVIVRRAGDVIPEVVSVILDRRPQGTAPWQMPTRCPVCGSEIVREEGAAAWRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL--- 493
SG + C AQRK + HF+SR+AM+I GLG K IE LV+A IV + DLY+++ L
Sbjct: 427 SGE-LSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIVKSVADLYRLSRDQLLHL 485
Query: 494 --------------------------------LRLD----------------------RV 499
L+LD ++
Sbjct: 486 KLVLDAEDPSALAAALKLHLSAEGSGAVLNAVLKLDGNDPGWRARALVQPASFEWNPKKI 545
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
+ K A+N++ AI S+ T R ++ALGI HVGE+TAK LA +F +LE +
Sbjct: 546 ATKWADNLIAAIDASRAATLERLLFALGIEHVGESTAKALAQWFGDLELIRHLPWPLFKR 605
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGGKVVNFISKNTNYLVKG 619
+P IG ++ F Q ++ I L VG +++ + K+ + LV+
Sbjct: 606 VPDIGGEVARSLGHFFEQQGNQQAIDDLLQVGQVRISDVHAPSAKLREGLDL-AQLLVES 664
Query: 620 QKPG------KKLEKAIKLNIKILDEKNFVKIVKGFSTET 653
+ PG +KL A+ +LD ++ + G +T
Sbjct: 665 EIPGITRLRAEKLVAALPGAQAVLDAEHGQFVNAGLPDDT 704
>gi|398813740|ref|ZP_10572433.1| DNA ligase, NAD-dependent [Brevibacillus sp. BC25]
gi|398038308|gb|EJL31476.1| DNA ligase, NAD-dependent [Brevibacillus sp. BC25]
Length = 671
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 260/671 (38%), Positives = 397/671 (59%), Gaps = 51/671 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ EL K + RHN Y+ D P ISD +YDQL+ ELK++E +P+L + DS + VG
Sbjct: 9 KIKELAKRIERHNRLYHEEDRPEISDQEYDQLMRELKELETSFPDLQSPDSPSLRVG--- 65
Query: 77 GEN----SKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
GE K VH T M+SL N F++ED+ F++R+ + ++ + Y+AELK DG+AV+
Sbjct: 66 GEPLPFFEKVVHKT-PMLSLGNAFNEEDIRDFDRRVRQAVG-SQAVRYVAELKIDGLAVS 123
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
L YE G + +TRGDG GE+IT N+ I IPL L P LEVR E + K F
Sbjct: 124 LHYENGLFVRGATRGDGTTGEDITQNLKTIRSIPLRLT---KPVTLEVRGEAYMSKGAFE 180
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
KLNK R G F NPRN+AAG LRQL+PKI ++ L F +G+G+L+G + SHSE
Sbjct: 181 KLNKEREERGEALFANPRNSAAGSLRQLDPKIAASRQLDTFIYGIGDLQGETV-ESHSEG 239
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
L+ + +G + E V V++L+ F KR +LPYEIDG+V K++ + Q++LGF
Sbjct: 240 LDLLETLGFMVNQERRVFDDVDELLAFIAGWTEKRPHLPYEIDGMVIKVDSYAQQEELGF 299
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
T+++PR+A+AYKF ++EA+T ++ I + +GRTG +TP ALLKPV + G T+ RA+LHNE
Sbjct: 300 TAKSPRWAIAYKFPAEEAVTILEGIEVSVGRTGNVTPTALLKPVSLAGTTVKRASLHNED 359
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
I K + IGD VVV ++G++IP+I + + R + F +P CP C S+++ +E +
Sbjct: 360 IIREKGLLIGDHVVVKKAGDIIPEIIAVLPERRTGNEVPFAMPTHCPECGSELVRLEEEV 419
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
RC C A + G+ HF SR AMNI GLG+K++ +L + I+ + DLY ++ +
Sbjct: 420 ALRCINPM--CPALIREGMIHFVSRTAMNIDGLGEKVVAQLYHDGIIHSVADLYYLHQQR 477
Query: 493 --LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
LL ++R+ K +N+L AI+ SK + R ++ LGIR VG A+ LA +F N++ +
Sbjct: 478 DVLLGMERMGEKSVDNLLAAIEASKENSLERVLFGLGIRLVGAKAARVLAEHFGNIDAIM 537
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+EE++ I +IG + + + QP + +I +LR G+
Sbjct: 538 QASEEEITQIDEIGPKMAASLVNYFTQPQAQAVIERLRAAGVNMEYKGIRIESGADLPFS 597
Query: 595 -----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
L T+ GGKV +SK T+ ++ G+K G KLEKA KL + +
Sbjct: 598 GKTIVLTGTLTQMSRQEAEEAIARMGGKVTGSVSKKTDLVIAGEKAGSKLEKAEKLGVAV 657
Query: 637 LDEKNFVKIVK 647
+DE F+++++
Sbjct: 658 MDEAGFLQVLE 668
>gi|238020272|ref|ZP_04600698.1| hypothetical protein GCWU000324_00147 [Kingella oralis ATCC 51147]
gi|237868666|gb|EEP69670.1| hypothetical protein GCWU000324_00147 [Kingella oralis ATCC 51147]
Length = 797
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 244/598 (40%), Positives = 363/598 (60%), Gaps = 29/598 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ L +L+++ YY D P + D++YD+L EL+ +E +YP+ +S T VG
Sbjct: 26 KIQTLTAQLNQYAHEYYTLDAPTVPDSEYDRLYRELEALETEYPQFRLPESPTNRVGGAV 85
Query: 77 GENSKYVHHTFKMMSLDNGFSDED----------VIIFNKRITNELKLTKNIEYIAELKF 126
+ + V H M+SL N FS D + F++R+ +L + EYI E KF
Sbjct: 86 LDGFETVIHAVPMLSLANAFSPRDDEAGTFDHAEMRAFDERVCKDLG-AAHTEYIIEPKF 144
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+A++L Y+ G L QA+TRGDG GE++T NI + IPL L+ P+L+EVR EVL+
Sbjct: 145 DGLAISLLYQNGILIQAATRGDGTTGEDVTENIKTVRNIPLRLHGDEVPDLIEVRGEVLM 204
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELR-GMNM 245
K DF LN + G K F NPRNAAAG LRQLN I + LHFF +G+ L
Sbjct: 205 LKADFAALNARQLDAGQKPFANPRNAAAGSLRQLNSAITAQRKLHFFGYGIARLSTAFRQ 264
Query: 246 PSSHSELLNWYQKIGLS-ICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCL 304
P +H++ + ++G S + V + + ++++FY+ + +R LPYEIDG+V K+N L
Sbjct: 265 PENHAQEIELLARLGFSEPQAQIRVCANIQEVLDFYETMAQQRPQLPYEIDGMVVKVNDL 324
Query: 305 STQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITIT 364
Q++LGF SRAPR+A+A+KF ++EALT ++AI++Q+GRTG ITPVA LKPV + G+T+T
Sbjct: 325 RQQQQLGFVSRAPRWAIAHKFPAEEALTTVEAIDVQVGRTGSITPVARLKPVFVGGVTVT 384
Query: 365 RATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRP------------NDSKIF 412
ATLHN+ E+ RK++++GDTVVV R+G+VIP++ +L RP F
Sbjct: 385 NATLHNQDEVARKDVRVGDTVVVRRAGDVIPEVVRVVLERRPMRNVDLLGERQEPQHPAF 444
Query: 413 KIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEK 472
++P CP+C S + +ARC+G I C AQR GL HF+SRKAM+I+GLG K IE
Sbjct: 445 RLPETCPVCGSAVEREIGEAVARCTGG-IVCKAQRAQGLIHFASRKAMDIVGLGDKQIEA 503
Query: 473 LVNANIVVTAVDLYKINFKNLLRLDRV---SNKLANNILLAIQKSKLTTFSRFIYALGIR 529
LV +++ + D+Y+++ L + +NK +NIL A+ S+ +RF++ALGIR
Sbjct: 504 LVEQDVLHSFADIYQLDIAKLQTIKDSKSGANKWTHNILDAVAASRQPPLARFLFALGIR 563
Query: 530 HVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQL 587
HVGE+TAK+LA F + + + +A E L +P IGS + F P + L+ L
Sbjct: 564 HVGESTAKQLAAAFGDWDTVRRAPEPVLACLPDIGSVVAHSIAHFFRLPEQQKLLDDL 621
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 599 NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
GGKV +SK T+++V G + G KLEKA L I +L E+ + ++
Sbjct: 749 EAAGGKVSGSVSKKTDFVVAGAEAGSKLEKAQSLGITVLSEEELLGML 796
>gi|433443265|ref|ZP_20408702.1| DNA ligase, NAD-dependent [Anoxybacillus flavithermus TNO-09.006]
gi|432002226|gb|ELK23081.1| DNA ligase, NAD-dependent [Anoxybacillus flavithermus TNO-09.006]
Length = 669
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 246/665 (36%), Positives = 397/665 (59%), Gaps = 43/665 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ EL++++ +HN AYY+ D P ISD +YD+L+ +L ++EE+YP+ T DS +Q VG
Sbjct: 9 QIAELREQIEKHNYAYYVLDQPSISDAEYDELMRKLMELEEQYPQYKTPDSPSQRVGGAP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E + V H M+SL N F++ D+ F++R+ E+ ++ Y+ ELK DG+AV+LRYE
Sbjct: 69 LEAFQKVTHRVPMLSLSNAFNEGDLRDFDRRVRQEVG---DVRYVCELKIDGLAVSLRYE 125
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
GY Q +TRGDG GE+IT N+ I +PL L + +EVR E + +K F KLN+
Sbjct: 126 DGYFVQGATRGDGTTGEDITENLKTIRSLPLRLRKQV---TIEVRGEAYMPRKSFEKLNE 182
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G + F NPRNAAAG LRQL+PK+ ++ L FA+ V + + SHS LN+
Sbjct: 183 KRKMNGEELFANPRNAAAGSLRQLDPKVAASRQLDIFAYHVVNAEELGI-LSHSAALNYL 241
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++G V ++ ++ + ++ + +R +LPY+IDG+V K++ + QK+LG T+++
Sbjct: 242 DELGFKTNPARQVCETIDDVLAYIEQWHERRASLPYDIDGIVIKVDAFAQQKQLGATAKS 301
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T++ I I +GRTG++TP A+L+PV + G + RA+LHNE I
Sbjct: 302 PRWAIAYKFPAEEVVTQLVDIEISVGRTGVVTPTAILQPVRVAGTIVQRASLHNEDYIRE 361
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I++GD V++ ++G++IP++ S+ R + F +P CP+C S+++ ++ + RC
Sbjct: 362 KDIRLGDYVIIKKAGDIIPEVVRSLPERRTGKEEPFDMPTHCPVCASELVRLDDEVALRC 421
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+C AQ + GL HF SR+AMNI GLG+K+I +L +V + DLY + L+ L
Sbjct: 422 VNP--QCPAQIREGLIHFVSRQAMNIDGLGEKVIAQLFEHGLVRSVADLYTLTKDELVAL 479
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N+L AI+ SK + R ++ LGIRHVG AK LA +F+ +E + +AT+E+
Sbjct: 480 ERMGEKSATNLLRAIEASKQNSLERLLFGLGIRHVGAKAAKTLAEHFETMERLQQATKEE 539
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI------------------------ 592
L I +IG + + + ++ + L+ +LR G+
Sbjct: 540 LTAIHEIGEKMADSIVTYFSKEEVKQLLERLRAYGVNMTYKGAKQTVDISSTFAGKTFVL 599
Query: 593 ----YWLNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
++ K GGKV +SK T+ +V G+ G KLEKA +L I I DE F
Sbjct: 600 TGTLQSMSRSEAKEAIEALGGKVTGSVSKKTDVIVVGEDAGSKLEKAKQLGITIWDEARF 659
Query: 643 VKIVK 647
++ ++
Sbjct: 660 LQEIQ 664
>gi|319638552|ref|ZP_07993314.1| DNA ligase [Neisseria mucosa C102]
gi|317400301|gb|EFV80960.1| DNA ligase [Neisseria mucosa C102]
Length = 822
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 256/648 (39%), Positives = 369/648 (56%), Gaps = 74/648 (11%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ L L+R+ YY D P + D +YD+L EL+ +E +PEL DS TQ VG
Sbjct: 7 RIKYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALERNHPELKLPDSPTQRVGGEP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDED---------VIIFNKRITNELKLTKNIEYIAELKFD 127
V H M+SL N FS +D + F++R+ L K EY+ E KFD
Sbjct: 67 LSGFAEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRGGLNGEKP-EYVIEPKFD 125
Query: 128 GIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIY 187
G+A++L Y G L QA+TRGDG GE++T N+ + IPL L+ + PEL+E+R EVL+
Sbjct: 126 GLAISLLYRDGVLTQAATRGDGTTGEDVTQNVKTVSNIPLRLHGENIPELIEIRGEVLML 185
Query: 188 KKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPS 247
K DF LN + G K F NPRNAAAG LRQL+ +I + LHFF + + +G +
Sbjct: 186 KADFAALNARQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQQGGFIAE 245
Query: 248 SHSELLNWYQKIGLSIC-GEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
H + L++ +++G S+ G + ++K++ FY+++ KR LPYEIDG+V K+N L+
Sbjct: 246 EHLQELSYCKELGFSLPDGNFGCFPNIDKVLAFYEQMQQKRPTLPYEIDGMVIKVNSLTQ 305
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q++LGF SRAPR+A+A+KF ++EALT ++AI++QIGRTG +TPVA L+PV + G+T+T A
Sbjct: 306 QRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNA 365
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDS----------------- 409
TLHN+ E+ RK++++GDTVVV R+G+VIP++ I RP
Sbjct: 366 TLHNQDEVSRKDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQEANVTVSDGLQDDLFAKT 425
Query: 410 ----------KIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKA 459
K +++P CPIC S+I E +ARCSG + C AQR GL HF+SRKA
Sbjct: 426 PSETQAKPLHKPYRLPTHCPICRSEIEREEGEAVARCSGGML-CQAQRAQGLIHFASRKA 484
Query: 460 MNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSN------------------ 501
M+I GLG+K IE+LV ++V DLY+++ L ++ +++
Sbjct: 485 MDIDGLGQKQIEQLVAQDLVRHFADLYRLDIPTLQKMKEMADKASANEEEPSNSEIGDFE 544
Query: 502 -----------------KLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFK 544
K A NIL I+ SK +RF++ALGIRHVGE TAK LA F
Sbjct: 545 GETGNTLLAKNNKKQPTKWAENILAGIEASKTPELARFLFALGIRHVGERTAKTLAQAFG 604
Query: 545 NLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI 592
LE + A E L +P IG+ + F Q + +I +L VG+
Sbjct: 605 TLEHVRHAPEPILACLPDIGTVVAHSIAHFFAQEAQQAMIDELLAVGV 652
Score = 39.7 bits (91), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
GGKV +SK T+Y+V G+ G KLEKA L I +
Sbjct: 777 GGKVSGSVSKKTDYVVAGEAAGSKLEKAQTLGIAV 811
>gi|449467561|ref|XP_004151491.1| PREDICTED: DNA ligase-like [Cucumis sativus]
Length = 540
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/535 (43%), Positives = 339/535 (63%), Gaps = 3/535 (0%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P + D +YD+L+ EL+ +E ++PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRDLEAQHPELITPDSPTQRVGAEP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYI--AELKFDGIAVNLR 134
V H M+SLDN F +E + FNKR+ + LK N+ + ELK DG+AV++
Sbjct: 67 LGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSVDNLSWCWCCELKLDGLAVSIL 126
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194
YE G + +A+TRGDG GE+ITTN+ I IPL L P LEVR EV + + F K+
Sbjct: 127 YENGVMVRAATRGDGTTGEDITTNVRTIRAIPLKLRGDNIPARLEVRGEVFLPQAGFEKI 186
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N+ G K F NPRNAAAG LRQL+P+I + L F +GVG L G ++P +H L
Sbjct: 187 NEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFLCYGVGILEGGDLPETHLGRLM 246
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
+++ GL + + ++ FY K+ R L ++IDGVV K+N L+ Q++LGF +
Sbjct: 247 QFKEWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQLGFVA 306
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
RAPR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI
Sbjct: 307 RAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEI 366
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
R ++IGD VV+ R+G+VIP++ + + S RP D++ + P CP+C S + +E +
Sbjct: 367 ARLGLRIGDKVVIRRAGDVIPQVVNVVESERPADTRAIEFPAHCPVCGSDVERVEGEAVT 426
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+ + L
Sbjct: 427 RCTGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFTLTAGKLT 485
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECM 549
LDR+ K A N++ A++ +K TTF+RF+YALGIR VGE TA LA YF LE +
Sbjct: 486 GLDRMGPKSAQNVVNALEAAKNTTFARFLYALGIREVGEATAAGLAAYFGTLEAL 540
>gi|169825829|ref|YP_001695987.1| DNA ligase [Lysinibacillus sphaericus C3-41]
gi|254781361|sp|B1HTW6.1|DNLJ_LYSSC RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|168990317|gb|ACA37857.1| DNA ligase [Lysinibacillus sphaericus C3-41]
Length = 667
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 251/672 (37%), Positives = 396/672 (58%), Gaps = 48/672 (7%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+++ R+ EL K LH + AYY+ D P+++D+ YDQLL EL +EE P L+ DS TQ
Sbjct: 1 MNEIEQRIAELNKLLHEYGYAYYVLDKPVVADSVYDQLLHELIALEEANPSLIFPDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG E K V H + M+SL N F++ D+ F++++ + + Y+ ELK DG+A
Sbjct: 61 RVGGTVVEGFKKVTHDYPMLSLSNAFNEADLQEFDRKVRQ--AIGDHFSYVCELKIDGLA 118
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
++L+YE G Q +TRGDG +GE IT N+ IH IPL L P +EVR E + KK
Sbjct: 119 ISLKYENGVFVQGATRGDGVVGEEITANLKTIHAIPLRLK---EPITIEVRGEAYMPKKS 175
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAH---GVGELRGMNMPS 247
F KLN R G + F NPRNAAAG LRQL+PKI ++ L F + G GE+ G++
Sbjct: 176 FEKLNAQRADNGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEIYGID--- 232
Query: 248 SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQ 307
H+E+L++ + +G E S + +++ F + R +L YEIDG+V K++ + Q
Sbjct: 233 GHAEMLDYLEDLGFPSNKERQRCSTIEEVMAFIEHWTENRPHLAYEIDGIVIKVDRYAQQ 292
Query: 308 KKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRAT 367
+LG+T+++PR+A+AYKF ++E +T + I++ +GRTG++TP A+L PV + G T+ RA+
Sbjct: 293 DELGYTAKSPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILTPVQVAGTTVQRAS 352
Query: 368 LHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIY 427
LHNE I K+I++GDTV++ ++G++IP++ ++ RP +S F++P CP+C+S++I
Sbjct: 353 LHNEDLIRDKDIRLGDTVIIRKAGDIIPQVVGVLIEQRPENSVPFEMPKNCPVCDSELIR 412
Query: 428 IESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYK 487
IE + RC C AQ +++F SR AMNI GLG K++E+L+ A+++ DLY
Sbjct: 413 IEGEVALRCVNPA--CFAQIAESIKYFVSRNAMNIDGLGDKVVEQLLRADLIHDVSDLYH 470
Query: 488 INFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLE 547
+ + L+ L+R+ K A N++ AIQ SK + R + LGIRHVGE AK ++ F ++E
Sbjct: 471 LTIEQLVELERMGEKSATNLVNAIQASKENSMERLLIGLGIRHVGEKAAKIVSEQFGSME 530
Query: 548 CMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL-----------N 596
+ ATEEQL+ I +IG + +++ + R +I +L +VG+ +
Sbjct: 531 AVMAATEEQLVAIYEIGDKMASSLVEYFSNDDARAVIERLAEVGVNMTFKGKKVEVVVGD 590
Query: 597 NP------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKL 632
NP GG V +SK T+ ++ G+ G KL KA +L
Sbjct: 591 NPFAGKTIVLTGKLEQLTRNEAKAKIEELGGTVTGSVSKKTDLVIAGEDAGSKLAKAEQL 650
Query: 633 NIKILDEKNFVK 644
I++ +E N ++
Sbjct: 651 GIEVWNEDNLIE 662
>gi|338811029|ref|ZP_08623267.1| DNA ligase, NAD-dependent [Acetonema longum DSM 6540]
gi|337277162|gb|EGO65561.1| DNA ligase, NAD-dependent [Acetonema longum DSM 6540]
Length = 679
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 252/663 (38%), Positives = 387/663 (58%), Gaps = 38/663 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ EL++ L H+ YY+ D P I D++YD+ L ++E YP LLT DS TQ VG
Sbjct: 17 IEELRRLLEYHSYRYYVLDAPEIPDSEYDRYFRRLTELEAAYPHLLTPDSPTQRVGGRPA 76
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
E H + SL N FS ++ F+ RI N L + + IEY+ ELK DG+A+NL Y+
Sbjct: 77 EGFAKSTHLSPLYSLGNVFSVAELQSFHSRIVNMLDI-ETIEYVVELKIDGLAMNLTYDQ 135
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVL-NIKYP-PELLEVRCEVLIYKKDFIKLN 195
G L + +TRGDG IGE++T NI I IPL L +P P++LEVR EV + + F +LN
Sbjct: 136 GALTRGATRGDGVIGEDVTGNIRTIRSIPLALRQADFPLPDVLEVRGEVFMPRAAFNRLN 195
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
+ R G F NPRNAAAG LRQL+P+I + L FF HG+G G+ + S+++ ++
Sbjct: 196 REREQKGEALFANPRNAAAGSLRQLDPRITAGRTLDFFVHGIGRHDGLTL-ESYNQGMDV 254
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+++G I + + ++I++ KR LPY+IDG+V K+N L Q LGFT++
Sbjct: 255 LRQLGFKINPYCRLCRNIQEVIDYCDSWAGKRAELPYDIDGLVIKVNSLDMQAGLGFTAK 314
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
PR+A+A+KF +++A+T ++ I I++GRTG++TP ALL+PV + G T++RATLHN I
Sbjct: 315 DPRWAIAFKFAAEQAVTVVEDILIRVGRTGVLTPTALLQPVRLAGSTVSRATLHNADYIA 374
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
K+I+IGDTV++H++G +IP++ S + S R K F++P CP C S + +ES +
Sbjct: 375 EKDIRIGDTVIIHKAGEIIPEVVSVVASQRTGREKSFEMPKTCPECESPVARLESEAAYK 434
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+ C A + L HF+SR AM+I GLG +I L +A +V D Y++ ++ R
Sbjct: 435 CTNP--HCPALLREKLIHFASRDAMDIEGLGPAVINSLADAGLVKDVADFYRLQAPDIAR 492
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L+R+ K A N+L AI+ SK SR ++ALGIRHVG A LA +F+ + + A E
Sbjct: 493 LERLGEKSAQNLLAAIEASKFQGLSRLLFALGIRHVGSKAAAILARHFRTADRLAVAESE 552
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNN---PNTK----------- 601
+L + +IG + + + QP + LIS L+++G+ P K
Sbjct: 553 ELTALDEIGPKIADSILHYFAQPENLELISNLQNLGVDTTETQAAPVAKQILAGKTFVLT 612
Query: 602 ------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
GGKV +SK T++++ G++ G KL+KA +L + ++DE F+
Sbjct: 613 GTLPTMTREEAASVIEKLGGKVSASVSKKTDFVLAGEQAGSKLDKARELGVTVIDEGQFL 672
Query: 644 KIV 646
++
Sbjct: 673 ELT 675
>gi|345871850|ref|ZP_08823792.1| DNA ligase [Thiorhodococcus drewsii AZ1]
gi|343919906|gb|EGV30647.1| DNA ligase [Thiorhodococcus drewsii AZ1]
Length = 747
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 232/565 (41%), Positives = 360/565 (63%), Gaps = 5/565 (0%)
Query: 16 FRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLV 75
R L+ + HN YY+ D+P + D +YD+L+ ELK +E +P+L+T DS TQ VG
Sbjct: 9 LRAESLRARILYHNHRYYVLDDPEVPDAEYDRLVRELKGLESAHPDLVTSDSPTQRVGAA 68
Query: 76 GGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRY 135
+ V H M+SLDN SDE++ F++R+ + L Y+AE K DG+A++LRY
Sbjct: 69 PRPEFREVRHAIPMISLDNAMSDEELADFHRRVLSGLSGGDAPLYVAEPKLDGLAISLRY 128
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
E G L A+TRGDG GE++T I IPL L + PE+LEVR EV + + F +LN
Sbjct: 129 ERGVLVLAATRGDGTRGEDVTHTARTIPSIPLSLIGEDRPEILEVRGEVYMTRAGFARLN 188
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
+ G + F NPRNAAAG LRQL+P++ + L F +G GEL + + SE+L
Sbjct: 189 EEILERGERPFANPRNAAAGSLRQLDPRVTARRPLTFCCYGWGEL-SVPADARQSEMLRR 247
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
G+ I E ++SG++ ++++ ++ +R L ++IDGVV+K++ L+ Q +LG T+
Sbjct: 248 LAGWGIPISRELRLVSGLDGCRDYFEDLSRRRDRLDFDIDGVVFKLDSLADQTRLGATNH 307
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
PR+A+A KF ++E +T+++++ Q+GRTG +TPVA L+PV + G+T++ ATLHN E+
Sbjct: 308 HPRWAIARKFPAQEEMTRVESVEFQVGRTGAVTPVARLRPVQVGGVTVSNATLHNMDEVA 367
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
RK+++IGDTV+V R+G+VIP++ ++ RP D + ++P+ CP+C S +I E +AR
Sbjct: 368 RKDVRIGDTVIVRRAGDVIPEVVRVVVERRPADVREVELPSQCPVCGSDVIRPEGEAVAR 427
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C+G C AQRK L+HF+SR+AM+I GLG K+IE+LV+ + + DLY + L+
Sbjct: 428 CTGGLF-CQAQRKESLKHFASRRAMDIEGLGDKLIEQLVDLDWIREPADLYHLTQDRLVH 486
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
L+R+ K A N+L A++ SK T+F+RFI+ALGIR VG +TA+ LA F +E + +A E
Sbjct: 487 LERMGEKSAANLLAALEHSKETSFARFIHALGIREVGVSTAQALAGRFDGIESLMQARVE 546
Query: 556 ---QLLNIPKIGSTTVKAFIKFINQ 577
Q+ + +G T KA ++ +
Sbjct: 547 DFVQIRGVKGVGPETAKALHAYLAE 571
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 38/166 (22%)
Query: 519 FSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQL-LN----IPKIGSTTVKAFIK 573
+ ++ LG+R + A+ LA F +L + A E L LN + +G
Sbjct: 581 LAEWLAGLGVRGLTRGRAEALAERFGDLAGLRAAEPEDLYLNSRRLVDGVGPVVAAHIAG 640
Query: 574 FINQPLHRLLISQLRDVGIYW-------------------------LNNPNTK------- 601
F Q +R I L + GI+W L+ P +
Sbjct: 641 FFAQDHNREAIEHLLEAGIHWPSTSEPPSEPIAQPLAGKTIVITGTLSRPRDEIKARLQE 700
Query: 602 -GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
G KV +SK T+YL+ G++ G KL+KA L +++LDE ++
Sbjct: 701 LGAKVTGSVSKQTDYLLAGEEAGSKLDKARSLGVEVLDEAGLAALI 746
>gi|417540767|ref|ZP_12192702.1| DNA ligase, partial [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|353662063|gb|EHD01172.1| DNA ligase, partial [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
Length = 611
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 239/598 (39%), Positives = 360/598 (60%), Gaps = 35/598 (5%)
Query: 83 VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQ 142
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE G L
Sbjct: 13 IRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYENGVLVS 72
Query: 143 ASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLG 202
A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+ G
Sbjct: 73 AATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINEDARRTG 132
Query: 203 LKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLS 262
K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L ++ GL
Sbjct: 133 GKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQFKAWGLP 192
Query: 263 ICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALA 322
+ ++ +++FY+ + R L ++IDGVV K+N L+ Q++LGF +RAPR+A+A
Sbjct: 193 VSDRVTLCDSPQAVLDFYRNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARAPRWAVA 252
Query: 323 YKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIG 382
+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R ++IG
Sbjct: 253 FKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIERLGLRIG 312
Query: 383 DTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIE 442
D VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC+G I
Sbjct: 313 DKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRCTGGLI- 371
Query: 443 CIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNK 502
C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L LDR+ K
Sbjct: 372 CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAVKLTGLDRMGPK 431
Query: 503 LANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPK 562
A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++L +P
Sbjct: 432 SAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQKVPD 491
Query: 563 IGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------------- 598
+G F + +R +I QL G++W +++P
Sbjct: 492 VGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQ 551
Query: 599 ----NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE ++++
Sbjct: 552 MSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 609
>gi|116626792|ref|YP_828948.1| NAD-dependent DNA ligase [Candidatus Solibacter usitatus Ellin6076]
gi|122251346|sp|Q01NV7.1|DNLJ_SOLUE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|116229954|gb|ABJ88663.1| DNA ligase, NAD-dependent [Candidatus Solibacter usitatus
Ellin6076]
Length = 662
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 252/667 (37%), Positives = 394/667 (59%), Gaps = 43/667 (6%)
Query: 15 SFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGL 74
+ + +L+++LH H YY+ D P I+D +YD L+ L+++E K+P+LLT DS TQ VG
Sbjct: 5 AVEIEKLREQLHHHEHLYYVLDKPEITDAEYDALMHRLQELETKHPDLLTPDSPTQRVGG 64
Query: 75 VGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLR 134
E V H+ M+SLDN ++ ++ F++R+ + L Y+ ELK DG+++
Sbjct: 65 KPREGFIKVRHSSPMLSLDNALNEAELRDFDRRVRDLLG-GAAFRYVTELKMDGLSMAAH 123
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194
Y G +A TRGDG GE++T N I +PL + K P EVR E ++ ++ F +L
Sbjct: 124 YNNGKFTEAVTRGDGTTGEDVTENARTIRSLPLRVKTKLP--AFEVRGETVMSRRAFERL 181
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N R GL +F NPRNAAAG LRQL P++ ++ L ++ + + G SH E L
Sbjct: 182 NTDRDEKGLSRFANPRNAAAGSLRQLEPQVTASRRLEYYTYFL-LTEGRPAYESHWEALT 240
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
+++G + + +++++ F +R NLPYEIDGVV K++ + Q++LGFT+
Sbjct: 241 ALKQMGFKVNDKSRPCDSIDEVLAFCAHWEGERENLPYEIDGVVVKVDSVEQQRRLGFTA 300
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
+APR+A+AYK+ +++A T I+ I++Q+GRTG +TPVA LKPV++ G+T++RATLHNE EI
Sbjct: 301 KAPRWAIAYKYPARQATTMIEGIDVQVGRTGALTPVANLKPVVVGGVTVSRATLHNEDEI 360
Query: 375 YRKNIQIGDTVVVHRSGNVIPKI--TSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
R +QIGD VVV RSG+VIPK+ SS S R K FK+P+ CP+CN+KI+ E
Sbjct: 361 ERLGLQIGDEVVVERSGDVIPKVVRVSSQGSYR----KPFKMPSHCPVCNTKIVREEGEA 416
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
+RC + C A+ K + HF+SR MNI G+G ++++LV+ IV DLY + ++
Sbjct: 417 ASRCINA--NCPARLKESILHFASRGVMNIDGMGDALVDQLVDREIVHNIADLYDLKIED 474
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
L+ LDR+ K A N++ I KS+ + R + ALGIR VGE TA LA F +++ + +A
Sbjct: 475 LMDLDRMGVKSAGNVIRNIDKSRRNSLPRVLTALGIRFVGERTAVFLAQAFGSMDAIERA 534
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI---YWLNNP----------- 598
T ++L ++G +A ++F + P +R L+ +LR + Y + P
Sbjct: 535 TVDELQQAEEVGPKVAEAVVQFFSIPDNRELVDRLRKADLQFTYAYSRPKGGPLTGSTFV 594
Query: 599 -----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
GGKV + +SK T+Y+V G+ G KL+KA +LNI+++ E
Sbjct: 595 LTGTLPNLSREEAKQLIEQAGGKVASAVSKKTSYVVAGEDAGSKLDKAHQLNIRVITEAE 654
Query: 642 FVKIVKG 648
+++G
Sbjct: 655 LHAMLRG 661
>gi|417392434|ref|ZP_12155282.1| DNA ligase, partial [Salmonella enterica subsp. enterica serovar
Minnesota str. A4-603]
gi|353612019|gb|EHC64519.1| DNA ligase, partial [Salmonella enterica subsp. enterica serovar
Minnesota str. A4-603]
Length = 608
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 239/598 (39%), Positives = 359/598 (60%), Gaps = 35/598 (5%)
Query: 83 VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQ 142
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE G L
Sbjct: 10 IRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYENGVLVS 69
Query: 143 ASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLG 202
A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+ G
Sbjct: 70 AATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINEDARRTG 129
Query: 203 LKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLS 262
K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L ++ GL
Sbjct: 130 GKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQFKAWGLP 189
Query: 263 ICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALA 322
+ ++ +++FY + R L ++IDGVV K+N L+ Q++LGF +RAPR+A+A
Sbjct: 190 VSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARAPRWAVA 249
Query: 323 YKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIG 382
+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R ++IG
Sbjct: 250 FKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIERLGLRIG 309
Query: 383 DTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIE 442
D VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC+G I
Sbjct: 310 DKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRCTGGLI- 368
Query: 443 CIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNK 502
C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L LDR+ K
Sbjct: 369 CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGLDRMGPK 428
Query: 503 LANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPK 562
A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++L +P
Sbjct: 429 SAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQKVPD 488
Query: 563 IGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-------------- 598
+G F + +R +I QL G++W +++P
Sbjct: 489 VGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQ 548
Query: 599 ----NTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
+ K G KV +SK T+ ++ G+ G KL KA +L I ++DE ++++
Sbjct: 549 MSRDDAKARLVAVGAKVAGSVSKKTDLVIAGEAAGSKLTKAQELGITVIDEAEMIRLL 606
>gi|196250518|ref|ZP_03149209.1| DNA ligase, NAD-dependent [Geobacillus sp. G11MC16]
gi|196210008|gb|EDY04776.1| DNA ligase, NAD-dependent [Geobacillus sp. G11MC16]
Length = 670
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 248/664 (37%), Positives = 392/664 (59%), Gaps = 45/664 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R TEL++ L+R+ YY+ D P + D +YD+L+ EL IE++YPEL T DS TQ +G
Sbjct: 9 RATELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEKQYPELKTSDSPTQRIGGPP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E + V H MMSL N F++ D+ F++R+ E+ Y+ ELK DG+AV++RYE
Sbjct: 69 LEAFRKVTHRVPMMSLANAFNEGDLRDFDRRVRQEVG---EAAYVCELKIDGLAVSVRYE 125
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
GY Q +TRGDG GE+IT N+ I +PL LN P LE R E + K F++LN+
Sbjct: 126 DGYFVQGATRGDGTTGEDITENLKTIRSLPLRLN---EPVSLEARGEAFMPKASFLRLNE 182
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G + F NPRNAAAG LRQL+PK+ ++ L F +G+ + + SHS L++
Sbjct: 183 ERQARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGI-ESHSAALSYL 241
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
Q +G + E + ++++I F + KR LPYEIDG+V K++ + Q++LG T+++
Sbjct: 242 QSLGFKVNPERRRCATIDEVIAFVNEWKEKRPQLPYEIDGIVIKVDSFAQQRQLGATAKS 301
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + I + +GRTG +TP A+L+PV + G T+ RATLHNE I
Sbjct: 302 PRWAIAYKFPAEEVVTTLIGIEVNVGRTGAVTPTAILEPVRVAGTTVQRATLHNEDFIRE 361
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD V++ ++G++IP++ ++ R D F +P CP C S+++ ++ + RC
Sbjct: 362 KDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDEVPFTMPTHCPECESELVRLDGEVALRC 421
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+C AQ + L HF+SR AMNI GLG+K++ +L NA +V DLY++ + L+ L
Sbjct: 422 LNP--KCPAQLRERLIHFASRSAMNIEGLGEKVVTQLFNAGLVHDVADLYQLTKEQLVGL 479
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N+L AI+ SK + R ++ LGIR+VG A+ LA +F+ +E + AT+++
Sbjct: 480 ERMGEKSAANLLAAIEASKQNSLERLLFGLGIRYVGAKAAQLLAEHFETMERLEAATKDE 539
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI--------YWLNNPNTK------- 601
L+ +P+IG + + +QP L+++LR G+ P +
Sbjct: 540 LMAVPEIGEKMADSITTYFSQPEAVELLNELRTYGVNMAYKGRKRTAETPASSVLAGKTV 599
Query: 602 ---------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
GG+V +S++T+ ++ G+ G KL+KA +L I+I DE
Sbjct: 600 VLTGKLASMSRNEAKEQIERLGGRVTGSVSRSTDIVIAGEDAGSKLDKAQQLGIEIWDET 659
Query: 641 NFVK 644
F++
Sbjct: 660 RFLQ 663
>gi|424669346|ref|ZP_18106371.1| DNA ligase [Stenotrophomonas maltophilia Ab55555]
gi|401071417|gb|EJP79928.1| DNA ligase [Stenotrophomonas maltophilia Ab55555]
Length = 821
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 256/700 (36%), Positives = 387/700 (55%), Gaps = 66/700 (9%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R +L++++ + N AY+ D P I D YD+++ EL+ +E ++PEL DS TQ VG
Sbjct: 8 RAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADSPTQQVGARP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SL N FSDE+V F +RI L +++ + AE K DG+A++LRYE
Sbjct: 68 SGRFPEVRHAVPMLSLSNAFSDEEVADFVRRIDERLG-RRSLRFSAEPKMDGLAISLRYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G+ +TRGDG+ GE++T N+ I IP L+ K P++LEVR EV + + DF N+
Sbjct: 127 DGHFVLGATRGDGSTGEDVTANLREIGDIPKRLHGKDWPDVLEVRGEVYMARADFEAYNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K NPRNAAAG LRQL+PKI+ + L FFA+G GE++G +P +HS L
Sbjct: 187 RARLQGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGGELPDTHSGTLAQL 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
G + V+ G + L+ +Y+ I +R LP++IDGVVYK++ + Q+ +GF SRA
Sbjct: 247 GAWGFPVSELCKVVEGTDGLLGYYRTIGERRDGLPFDIDGVVYKLDDRAGQQAMGFVSRA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E T ++AI IQIGRTG TPVA L PV + G+ ++ ATLHN +I R
Sbjct: 307 PRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLHNADQIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++++GD+V+V R+G+VIP++ S IL RP + +++P CP+C S+I+ E RC
Sbjct: 367 LDVRVGDSVIVRRAGDVIPEVVSVILDRRPQGTTPWQMPTRCPVCGSEIVREEGAAAWRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL--- 493
SG + C AQRK + HF+SR+AM+I GLG K IE LV+A IV + DLY+++ L
Sbjct: 427 SGE-LSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIVKSVADLYRLSRDTLLHL 485
Query: 494 --------------------------------LRLD----------------------RV 499
L+LD ++
Sbjct: 486 KLVLDAEEPSALAAALKLHLPAEGSGAVLNAVLKLDGNDPGWRAQALAQPASFEWNTKKI 545
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
+ K A+N++ AI S+ T R ++ALGI HVGE+TAK LA +F +LE +
Sbjct: 546 ATKWADNLIAAIDASRAATLERLLFALGIEHVGESTAKALAQWFGDLELIRHLPWPLFKR 605
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGGKVVNFISKNTNYLVKG 619
+P IG ++ F Q ++ I L VG +++ + K+ + LV+
Sbjct: 606 VPDIGGEVARSLGHFFEQQGNQQAIDDLLQVGQVRISDVHAPSAKLREGLDL-AQLLVES 664
Query: 620 QKPG------KKLEKAIKLNIKILDEKNFVKIVKGFSTET 653
+ PG +KL A+ +LD ++ + G +T
Sbjct: 665 EIPGITRLRAEKLVAALPGAQAVLDAEHGQFVNAGLPDDT 704
>gi|417335358|ref|ZP_12118234.1| DNA ligase, partial [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
gi|353571789|gb|EHC35625.1| DNA ligase, partial [Salmonella enterica subsp. enterica serovar
Alachua str. R6-377]
Length = 608
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 238/598 (39%), Positives = 357/598 (59%), Gaps = 35/598 (5%)
Query: 83 VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQ 142
+ H M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE G L
Sbjct: 10 IRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYENGVLVS 69
Query: 143 ASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLG 202
A+TRGDG GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+ G
Sbjct: 70 AATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINEDARRTG 129
Query: 203 LKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLS 262
K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L ++ GL
Sbjct: 130 GKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQFKAWGLP 189
Query: 263 ICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALA 322
+ ++ +++FY + R L ++IDGVV K+N L+ Q++LGF +RAPR+A+A
Sbjct: 190 VSDRVTLCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARAPRWAVA 249
Query: 323 YKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIG 382
+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R ++IG
Sbjct: 250 FKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIERLGLRIG 309
Query: 383 DTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIE 442
D VV+ R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC+G I
Sbjct: 310 DKVVIRRAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRCTGGLI- 368
Query: 443 CIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNK 502
C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+++ L LDR+ K
Sbjct: 369 CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGLDRMGPK 428
Query: 503 LANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPK 562
A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++L +P
Sbjct: 429 SAQNVVNALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQKVPD 488
Query: 563 IGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNPNTK----------- 601
+G F + +R +I QL G++W +++P
Sbjct: 489 VGIVVATHVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQ 548
Query: 602 -------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
G KV +SK T+ ++ G+ G KL KA +L I ++DE ++++
Sbjct: 549 MSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGINVIDEAEMIRLL 606
>gi|226310273|ref|YP_002770167.1| NAD-dependent DNA ligase [Brevibacillus brevis NBRC 100599]
gi|254781268|sp|C0Z4D6.1|DNLJ_BREBN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|226093221|dbj|BAH41663.1| NAD-dependent DNA ligase [Brevibacillus brevis NBRC 100599]
Length = 671
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 260/671 (38%), Positives = 396/671 (59%), Gaps = 51/671 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ EL K + RHN Y+ D P ISD +YDQL+ EL+++E +P+L + DS + VG
Sbjct: 9 KIKELAKRIERHNRLYHEEDRPEISDQEYDQLMRELRELETSFPDLQSPDSPSLRVG--- 65
Query: 77 GEN----SKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
GE K VH T M+SL N F++ED+ F++R+ + ++ + Y+AELK DG+AV+
Sbjct: 66 GEPLPFFEKVVHKT-PMLSLGNAFNEEDIRDFDRRVRQAVG-SQAVRYVAELKIDGLAVS 123
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
L YE G + +TRGDG GE+IT N+ I IPL L P LEVR E + K F
Sbjct: 124 LHYENGLFVRGATRGDGTTGEDITQNLKTIRSIPLRLT---KPLTLEVRGEAYMSKGAFE 180
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
KLNK R G F NPRN+AAG LRQL+PKI ++ L F +G+G+L+G + SHSE
Sbjct: 181 KLNKEREERGEALFANPRNSAAGSLRQLDPKIAASRQLDTFIYGIGDLQGETV-ESHSEG 239
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
L+ + +G + E V V++L+ F KR +LPYEIDG+V K++ + Q++LGF
Sbjct: 240 LDLLETLGFMVNQERRVFDDVDELLAFIAGWTEKRPHLPYEIDGMVIKVDSYAQQEELGF 299
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
T+++PR+A+AYKF ++EA+T ++ I + +GRTG +TP ALLKPV + G T+ RA+LHNE
Sbjct: 300 TAKSPRWAIAYKFPAEEAVTILEGIEVSVGRTGNVTPTALLKPVSLAGTTVKRASLHNED 359
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
I K + IGD VVV ++G++IP+I + + R + F +P CP C S+++ +E +
Sbjct: 360 IIREKGLLIGDHVVVKKAGDIIPEIIAVLPERRTGNEVPFAMPTHCPECGSELVRLEEEV 419
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
RC C A + G+ HF SR AMNI GLG+K++ +L I+ + DLY ++ +
Sbjct: 420 ALRCINPM--CPALIREGMIHFVSRTAMNIDGLGEKVVAQLYRDGIIHSVADLYYLHQQR 477
Query: 493 --LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
LL L+R+ K +N+L AI+ SK + R ++ LGIR VG A+ LA +F N++ +
Sbjct: 478 DALLGLERMGEKSVDNLLAAIEASKENSLERVLFGLGIRLVGAKAARVLAEHFGNIDTIM 537
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------- 594
+A+EE++ I +IG + + + QP + +I +LR G+
Sbjct: 538 QASEEEITQIDEIGPKMAASLVNYFAQPQAQAVIERLRAAGVNMEYKGIRIESGADLPFS 597
Query: 595 -----LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
L T+ GGKV +SK T+ ++ G+K G KLEKA KL + +
Sbjct: 598 GKTIVLTGTLTQMSRQEAEEAIARLGGKVTGSVSKKTDLVIAGEKAGSKLEKAEKLGVAV 657
Query: 637 LDEKNFVKIVK 647
+DE F+++++
Sbjct: 658 MDEAGFLQVLE 668
>gi|304415222|ref|ZP_07395930.1| DNA ligase (NAD(+)-dependent) [Candidatus Regiella insecticola
LSR1]
gi|304282928|gb|EFL91383.1| DNA ligase (NAD(+)-dependent) [Candidatus Regiella insecticola
LSR1]
Length = 674
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 255/660 (38%), Positives = 391/660 (59%), Gaps = 40/660 (6%)
Query: 25 LHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVH 84
L H Y++ DNP I D +YD+L+ EL+++E +YPEL+ DS TQ VG V + V
Sbjct: 15 LQHHEYQYHVLDNPEIPDAEYDRLMNELRELETQYPELICADSPTQRVGAVPLNIFEQVK 74
Query: 85 HTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQAS 144
H M+SLDN F ++ + F++R+ N L LT+ + + E K DG+AV+L YE G L +A+
Sbjct: 75 HESPMLSLDNVFDEKSYLAFHQRLHNRLNLTEELAFCCEPKLDGVAVSLLYEKGELVRAA 134
Query: 145 TRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLK 204
TRGDG+IGENIT N+ I IPL L P+ +E+R EV + F + N+ H K
Sbjct: 135 TRGDGSIGENITANVRTIRTIPLRLRGDDIPQQIEIRGEVFMPLIGFAQFNEAARHKAEK 194
Query: 205 KF-TNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSI 263
KF +NPRNAAAG LRQL+P+I + L FF +G+G L+G +P H + L ++ GL +
Sbjct: 195 KFFSNPRNAAAGSLRQLDPRITAKRPLDFFCYGMGLLKGGALPQHHLQRLLQFKAWGLPV 254
Query: 264 CGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAY 323
+ G +++I FY+ + +R L ++IDGVV K++ LS Q++LGF++RAPR+A A+
Sbjct: 255 SNQIKRCIGSDQIIAFYRHLEQQRDRLDFDIDGVVIKVDDLSLQERLGFSARAPRWATAF 314
Query: 324 KFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGD 383
KF ++E +T+++ + Q+GRTG ITPVA L+P+ + G+ ++ ATLHN EI R ++ IGD
Sbjct: 315 KFPAQEKMTQVRQVEFQVGRTGAITPVARLEPIQLAGVMVSNATLHNADEIKRLDLHIGD 374
Query: 384 TVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIEC 443
TV++ R+G+VIPKI S +++ RP +++ P CP+C S I +E IARCSG+ + C
Sbjct: 375 TVIIRRAGDVIPKIVSVVMNARPLEAQEVSFPLHCPVCGSDIERLEGETIARCSGALL-C 433
Query: 444 IAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKL 503
AQRK L+HF SR+A+++ G+G K+IE+LV V DL+ + + L+ L+R+ K
Sbjct: 434 TAQRKKMLKHFVSRRALDVDGMGDKIIEQLVTKEYVKHPADLFHLTVEKLMGLNRMGAKS 493
Query: 504 ANNILLAIQK-SKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPK 562
A+N++ A++K +K R VGETTA LA +F+ L + A E L +
Sbjct: 494 AHNLIAALEKRNKRLXXXXXXXXXXXREVGETTAANLAAHFRTLSHLRSADVETLQQVAD 553
Query: 563 IGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------------- 594
+G I F+ Q ++ +I+ L V I+W
Sbjct: 554 VGVVVATHVINFLAQEHNQHVINALEAV-IHWPEPEQIIAVAEESNNIFTSKTIVLTGSL 612
Query: 595 --LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
L+ N K G KV N +SK T+ ++ G+ G KL KA +L IK++ E ++++
Sbjct: 613 NSLSRENAKDRLVALGAKVSNSVSKKTDLVIAGEGAGSKLIKAQELGIKVITEDEMLRLL 672
>gi|374620043|ref|ZP_09692577.1| DNA ligase, NAD-dependent [gamma proteobacterium HIMB55]
gi|374303270|gb|EHQ57454.1| DNA ligase, NAD-dependent [gamma proteobacterium HIMB55]
Length = 671
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 249/669 (37%), Positives = 381/669 (56%), Gaps = 34/669 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S ++ + L +L ++AY+ DNPI SD +YD+ L L+++EE P+LL S TQ
Sbjct: 1 MSAVADEIKALVAKLDAWSLAYHRDDNPIASDAEYDRELKRLRELEEANPDLLLPTSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + + H M+SLDN FS ED+ F +R +L +++ + + E K DG+A
Sbjct: 61 RVGDKPLSEFQSIAHKLPMLSLDNAFSGEDLQAFEERNAAKLSVSE-LCFCCEPKLDGVA 119
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
++L YE G LK A++RGDG +GE+IT N I +PL L + PP +LEVR EV+I + D
Sbjct: 120 LSLVYENGILKHAASRGDGTVGEDITHNARTIATVPLRLPVDNPPPVLEVRGEVVIPRAD 179
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F ++N+ G F NPRNAAAG LRQL+P++ + L F A+ VG ++P SH
Sbjct: 180 FAQMNERLIARGESVFQNPRNAAAGSLRQLDPRMTATRPLVFMAYSVGYSEQASLPGSHR 239
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
E LN+ ++G SG ++ +I +R N+ +IDGVV K++ Q+ L
Sbjct: 240 ETLNFLNELGFKTSDLIERASGWEAAEDYVSRILEQRDNIGVDIDGVVIKVDSYEQQQAL 299
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GF +RAPR+A+A KF ++E +T++ ++ Q+GRTG +TPVA L+PV + G+T++ ATLHN
Sbjct: 300 GFVARAPRWAIARKFPAQEEVTRLIDVDFQVGRTGAVTPVARLEPVFVGGVTVSNATLHN 359
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
EI R ++++GD V+V R+G+VIP+I ++ R + P CP C+S +
Sbjct: 360 ADEIARLDVRVGDEVIVRRAGDVIPQIVRALADRRTTPLQKIAFPTNCPDCDSTLTRDLE 419
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
RC + C AQ+KA L+H+ SRKAM+I G+G+K++ +L + +V + DLY ++
Sbjct: 420 EAAVRCENT-TGCPAQQKAALEHYVSRKAMDIDGVGEKLLHQLFDEGLVSSVADLYTLSH 478
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L L+R+ +K A + AI+ SK T RFIYALGIR VGE TA+ L+ +F LE +
Sbjct: 479 DRLADLERMGSKSAQKAVSAIEASKKTELPRFIYALGIREVGEATARNLSTHFGTLELLM 538
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNT---------- 600
+A+ E L + +G +F + +R LI QL D G++W + N
Sbjct: 539 QASRELLEEVDDVGPIVAAHIQRFFAREQNRSLIQQLLDAGLHWNTHDNQVVAGGVMSGQ 598
Query: 601 ----------------------KGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
GG+ +SK T+ L+ G G KL KA L IKI+D
Sbjct: 599 TWVVTGKLESMSRDEAGSLIRRHGGQTAGSVSKKTDVLLAGPGAGSKLSKAESLGIKIID 658
Query: 639 EKNFVKIVK 647
E +F+ +++
Sbjct: 659 EASFLVLLE 667
>gi|407008142|gb|EKE23602.1| hypothetical protein ACD_6C00409G0001, partial [uncultured
bacterium]
Length = 646
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 258/645 (40%), Positives = 383/645 (59%), Gaps = 40/645 (6%)
Query: 42 DNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVH--HTFKMMSLDNGFSDE 99
D++YDQL +LK +E++YP+L+ DS T VG G SK+V H M+SL N F+ E
Sbjct: 2 DSEYDQLFHQLKALEQQYPDLIQSDSPTDKVG--GQALSKFVTVTHAVPMLSLGNVFNQE 59
Query: 100 DVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNI 159
D++ F +RI L + IEY ELKFDG+A++L YE+G L + TRGDG GE+IT N+
Sbjct: 60 DLLAFARRIEERLP-NQKIEYDVELKFDGLAISLWYEHGVLTRGVTRGDGETGEDITQNV 118
Query: 160 HIIHKIPLVLNI--KYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGIL 217
I +P +L+ P+LLEVR EVL+ K F KLN G K F NPRNAAAG L
Sbjct: 119 RTIRNLPKLLSPVNGIIPDLLEVRGEVLMPKSGFEKLNAANAAKGEKTFANPRNAAAGSL 178
Query: 218 RQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLI 277
RQL+P I ++ L F+A+G+ + + ++ S L W + G ++ + + + +
Sbjct: 179 RQLDPNIAASRPLAFYAYGIAQCVPHHGQTTMSASLEWLHQFGFAVGERHFICDSIQDVQ 238
Query: 278 EFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAI 337
+ Y++I +R +L EIDG+V K+N L Q++LGF SR PR+A AYKF + ALT ++ I
Sbjct: 239 KVYEQIIDERASLSVEIDGMVIKVNDLKQQQQLGFLSREPRWATAYKFPAVAALTTVENI 298
Query: 338 NIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKI 397
N Q+GRTG +TPVA L PV + G+T++ TLHN EI+R +++IGDTV V+RSG+VIPK+
Sbjct: 299 NWQVGRTGTLTPVARLNPVAVGGVTVSNVTLHNIGEIHRLDVRIGDTVSVYRSGDVIPKV 358
Query: 398 TSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSR 457
RP D+ +P CP+C+S ++ E +ARCSG + C AQR ++HF SR
Sbjct: 359 EKVWPEFRPVDAVEVHLPEQCPVCDSPVVMPEGEALARCSGG-LYCAAQRIEAIRHFVSR 417
Query: 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKNLLRLDRVSNKLANNILLAIQKSK 515
KAM+I GLG + E L++ N++ D+Y + + + LL ++++ K N+L AI+ SK
Sbjct: 418 KAMDIEGLGDRWAESLLHLNLLNDVSDIYHLHEHRETLLGIEKMGAKSVQNLLDAIENSK 477
Query: 516 LTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575
TT + FIYALGIR VGETTA+ LAN F+ L+ + +A E L P +G T + + F
Sbjct: 478 KTTLAAFIYALGIRGVGETTARMLANTFQTLDALRQADLEALKKTPDVGDITAEWILDFF 537
Query: 576 NQPLHRLLISQLRDVGIYW----------LNNPN--------------------TKGGKV 605
P + ++ +L GI+W LN + G +V
Sbjct: 538 QAPHNLEVLDRLLAAGIHWDAPIAPTRQPLNGESWVVTGTLSSMGRDDATQLLQALGARV 597
Query: 606 VNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGFS 650
+S T +V G+K G KL+KA KL I +++E+ F+ +++ +
Sbjct: 598 SGSVSSKTKCVVAGEKAGSKLDKAEKLGIPVINEQQFIGLMQDYG 642
>gi|456736583|gb|EMF61309.1| DNA ligase [Stenotrophomonas maltophilia EPM1]
Length = 821
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 256/700 (36%), Positives = 386/700 (55%), Gaps = 66/700 (9%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R +L++++ + N AY+ D P I D YD+++ EL+ +E ++PEL DS TQ VG
Sbjct: 8 RAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADSPTQQVGARP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SL N FSDE+V F +RI L +++ + AE K DG+A++LRYE
Sbjct: 68 SGRFPEVRHAVPMLSLSNAFSDEEVADFVRRIDERLG-RRSLRFSAEPKMDGLAISLRYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G+ +TRGDG+ GE++T N+ I IP L+ K P++LEVR EV + + DF N+
Sbjct: 127 DGHFVLGATRGDGSTGEDVTANLREIGDIPKRLHGKDWPDVLEVRGEVYMARADFEAYNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K NPRNAAAG LRQL+PKI+ + L FFA+G GE++G +P +HS L
Sbjct: 187 RARLQGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGGELPDTHSGTLAQL 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
G + V+ G + L+ +Y+ I +R LP++IDGVVYK++ + Q+ +GF SRA
Sbjct: 247 GAWGFPVSELCKVVEGTDGLLGYYRTIGERRDGLPFDIDGVVYKLDDRAGQQAMGFVSRA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E T ++AI IQIGRTG TPVA L PV + G+ ++ ATLHN +I R
Sbjct: 307 PRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLHNADQIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++++GD+V+V R+G+VIP++ S IL RP + +++P CP+C S+I+ E RC
Sbjct: 367 LDVRVGDSVIVRRAGDVIPEVVSVILDRRPQGTTPWQMPTRCPVCGSEIVREEGAAAWRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL--- 493
SG + C AQRK + HF+SR+AM+I GLG K IE LV+A IV + DLY+++ L
Sbjct: 427 SGE-LSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIVKSVADLYRLSRDTLLHL 485
Query: 494 --------------------------------LRLD----------------------RV 499
L+LD ++
Sbjct: 486 KLVLDAEEPSALAAALKLHLPAEGSGAVLNAVLKLDGNDPGWRAQALAQPASFEWNTKKI 545
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
+ K A+N++ AI S+ T R ++ALGI HVGE+TAK LA +F +LE +
Sbjct: 546 ATKWADNLIAAIDASRAATLERLLFALGIEHVGESTAKALAQWFGDLELIRHLPWPLFKR 605
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGGKVVNFISKNTNYLVKG 619
+P IG ++ F Q ++ I L VG + + + K+ + LV+
Sbjct: 606 VPDIGGEVARSLGHFFEQQGNQQAIDDLLQVGQVRIADVHAPSAKLREGLDL-AQLLVES 664
Query: 620 QKPG------KKLEKAIKLNIKILDEKNFVKIVKGFSTET 653
+ PG +KL A+ +LD ++ + G +T
Sbjct: 665 EIPGITRLRAEKLVAALPGAQAVLDAEHGQFVNAGLPDDT 704
>gi|345022349|ref|ZP_08785962.1| NAD-dependent DNA ligase LigA [Ornithinibacillus scapharcae TW25]
Length = 668
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 248/668 (37%), Positives = 398/668 (59%), Gaps = 44/668 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ LK L+++ YY+ D+P + D++YDQ L ELKKIE +YPEL+T DS TQ +G
Sbjct: 9 KIESLKALLNQYAHEYYVLDHPSVPDSEYDQKLEELKKIENQYPELITNDSPTQRIGGEP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E + + H+ M+SL N F+++D+ F +R + K++ ++ ELK DG+A+ L YE
Sbjct: 69 LEGFRKIQHSIPMLSLGNAFNEQDLRDFARRASQ--GTNKDLAFVCELKIDGLAITLTYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G + +TRGDG GE+IT+N+ I IPL + +EVR E + K F+ LNK
Sbjct: 127 NGKFVRGATRGDGTTGEDITSNLRTIKSIPLSIQ---ETRKIEVRGEAYMPHKSFLALNK 183
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R + F NPRNAAAG LRQL+P+I ++ L F +G+GE +P+ HSE L
Sbjct: 184 QREENREELFANPRNAAAGSLRQLDPRIAASRNLDVFLYGIGEWEADTVPT-HSERLTQL 242
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K+G E+ + + +++E+ + +R NLPYEIDG+V KI+ L TQ++LGFT ++
Sbjct: 243 KKLGFRTNPEWKKCNSIEEVLEYVEYWTKERPNLPYEIDGIVIKIDDLQTQEELGFTVKS 302
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +TK+K I + +GRTG++TP A+L+PV + G T+ RA+LHNE I
Sbjct: 303 PRWAIAYKFPAEEVVTKLKDIELSVGRTGVVTPTAILEPVKVAGTTVQRASLHNEDLIRA 362
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD VV+ ++G++IP++ S+ R + F +P CP C S+++ +E + RC
Sbjct: 363 KDIRIGDMVVIKKAGDIIPEVVRSLTEQRSGSEEPFHMPEECPACGSELVRLEEEVALRC 422
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
C AQ + GL HF SR AMNI GLG+K+I +L + ++ T D+Y++ LL+L
Sbjct: 423 INP--NCPAQLQEGLIHFVSRNAMNIEGLGEKVINQLFSEGLIHTIADIYRLERDELLKL 480
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K +N+L AI+ S+ + R ++ LGIR +G AK LA F+ ++ + KAT E+
Sbjct: 481 ERMGEKSVDNLLSAIESSRENSLERLLFGLGIRFIGAKAAKTLATEFETMDKLQKATYEE 540
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW---------------------- 594
L+ I +IG + +++ + LI +L+++ +
Sbjct: 541 LIAIDEIGDKMADSVVQYFAEDKVTDLIKELKELQLNMEYKGPKRATVAVDSNPFAGKTV 600
Query: 595 --------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
++ P K GGKV +SK T+ ++ G+ G K +KA++L I I +E+
Sbjct: 601 VLTGKMEKMSRPEAKEKIESLGGKVTGSVSKKTDIVIAGEDAGSKYDKAVELGITIWNEE 660
Query: 641 NFVKIVKG 648
F+K+++G
Sbjct: 661 EFIKMLEG 668
>gi|190575033|ref|YP_001972878.1| NAD-dependent DNA ligase LigA [Stenotrophomonas maltophilia K279a]
gi|254781423|sp|B2FKJ1.1|DNLJ_STRMK RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|190012955|emb|CAQ46587.1| putative DNA ligase [Stenotrophomonas maltophilia K279a]
Length = 821
Score = 477 bits (1227), Expect = e-131, Method: Compositional matrix adjust.
Identities = 256/700 (36%), Positives = 386/700 (55%), Gaps = 66/700 (9%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R +L++++ + N AY+ D P I D YD+++ EL+ +E ++PEL DS TQ VG
Sbjct: 8 RAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADSPTQQVGARP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
V H M+SL N FSDE+V F +RI L +++ + AE K DG+A++LRYE
Sbjct: 68 SGRFPEVRHAVPMLSLSNAFSDEEVADFVRRIDERLG-RRSLRFSAEPKMDGLAISLRYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G+ +TRGDG+ GE++T N+ I IP L+ K P++LEVR EV + + DF N+
Sbjct: 127 DGHFVLGATRGDGSTGEDVTANLREIGDIPKRLHGKDWPDVLEVRGEVYMARADFEAYNE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K NPRNAAAG LRQL+PKI+ + L FFA+G GE++G +P +HS L
Sbjct: 187 RARLQGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGGELPDTHSGTLAQL 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
G + V+ G + L+ +Y+ I +R LP++IDGVVYK++ + Q+ +GF SRA
Sbjct: 247 GAWGFPVSELCKVVEGTDGLLGYYRTIGERRDGLPFDIDGVVYKLDDRAGQQAMGFVSRA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E T ++AI IQIGRTG TPVA L PV + G+ ++ ATLHN +I R
Sbjct: 307 PRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLHNADQIAR 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++++GD+V+V R+G+VIP++ S IL RP + +++P CP+C S+I+ E RC
Sbjct: 367 LDVRVGDSVIVRRAGDVIPEVVSVILDRRPQGTTPWQMPTRCPVCGSEIVREEGAAAWRC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL--- 493
SG + C AQRK + HF+SR+AM+I GLG K IE LV+A IV + DLY+++ L
Sbjct: 427 SGE-LSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIVKSVADLYRLSRDTLLHL 485
Query: 494 --------------------------------LRLD----------------------RV 499
L+LD ++
Sbjct: 486 KLVLDAEEPSALAAALKLHLPAEGSGAVLNAVLKLDGNDPGWRAQALAQPASFEWNTKKI 545
Query: 500 SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN 559
+ K A+N++ AI S+ T R ++ALGI HVGE+TAK LA +F +LE +
Sbjct: 546 ATKWADNLIAAIDASRAATLERVLFALGIEHVGESTAKALAQWFGDLELIRHLPWPLFKR 605
Query: 560 IPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGGKVVNFISKNTNYLVKG 619
+P IG ++ F Q ++ I L VG + + + K+ + LV+
Sbjct: 606 VPDIGGEVARSLGHFFEQQGNQQAIDDLLQVGQVRIADVHAPSAKLREGLDL-AQLLVES 664
Query: 620 QKPG------KKLEKAIKLNIKILDEKNFVKIVKGFSTET 653
+ PG +KL A+ +LD ++ + G +T
Sbjct: 665 EIPGITRLRAEKLVAALPGAQAVLDAEHGQFVNAGLPDDT 704
>gi|421873843|ref|ZP_16305453.1| DNA ligase, NAD-dependent [Brevibacillus laterosporus GI-9]
gi|372457183|emb|CCF15002.1| DNA ligase, NAD-dependent [Brevibacillus laterosporus GI-9]
Length = 668
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 248/666 (37%), Positives = 397/666 (59%), Gaps = 43/666 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +LKK + + YY DNP I+D +YDQ++ EL+ +E+++P+++T DS TQ VG +
Sbjct: 9 QIAKLKKRIEEESRHYYTEDNPQITDQEYDQMMRELQDLEDQWPDMVTPDSPTQRVGGMP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F ++D+ F++R+ L + + Y++ELK DG+AV+LRYE
Sbjct: 69 LPFFEKVVHKTPMLSLGNAFDEDDLRDFDRRVRQGLG-NQTVRYVSELKIDGLAVSLRYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G + +TRGDG GE+IT N+ I IPL L P +EVR E + K F +LNK
Sbjct: 128 NGLFVKGATRGDGTTGEDITQNLKTIRSIPLRLP---EPITMEVRGEAFMSKIAFDRLNK 184
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R F NPRN+AAG LRQL+PKI ++ L F + +GE+ G + SHSE L +
Sbjct: 185 ERAEREEALFANPRNSAAGSLRQLDPKIAASRSLSTFIYQIGEVEGRQI-DSHSEGLTFL 243
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+++G S+ E + ++IEF + +KR L YEIDG+V K++ + Q++LGFT+++
Sbjct: 244 ERLGFSVNQERRTFDDIEEVIEFVQSWTLKRPELSYEIDGMVIKVDSFAQQQELGFTAKS 303
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++EA+T++K I + +GRTG++TP ALL+PV++ G + RA+LHNE I +
Sbjct: 304 PRWAIAYKFPAEEAVTQLKDIEVSVGRTGVVTPTALLQPVILAGTEVKRASLHNEDIIMK 363
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K + +GD V+V ++G++IP+I + R + + F +P CP C S+++ + + RC
Sbjct: 364 KGLLLGDYVLVKKAGDIIPEIVEVLKERRTGEERPFMMPTHCPECASELVRLPDEVALRC 423
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK--NLL 494
EC A + G+ HF SR+AMN+ GLG+K++ L A ++ + DLY + K LL
Sbjct: 424 INP--ECPAVIREGMSHFVSRQAMNLDGLGEKVVASLFAAGLITSVADLYYLQDKREQLL 481
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
+L+R+ K + +L AI+ SK + R ++ LGIR VG AK LA F +++ + +AT
Sbjct: 482 QLERMGEKSVDKMLQAIEASKENSVERLLFGLGIRLVGAKAAKVLAEQFGDIDHIMQATA 541
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------- 594
E+L+ I +IG ++ + + + P + LI +L++ G+
Sbjct: 542 EELIAIDEIGPKMAESILTYFSMPQVQELIEKLKNAGVNMNYKGVRVQAGEDLPFSGKTV 601
Query: 595 -LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
L T+ GGKV +SK T+ ++ G+K G KLEKA KL I +LDE+
Sbjct: 602 VLTGTLTQLTRQEAEEKIAMLGGKVTGSVSKKTDLVIAGEKAGSKLEKAEKLGITVLDEE 661
Query: 641 NFVKIV 646
F+ ++
Sbjct: 662 AFLALL 667
>gi|406038028|ref|ZP_11045392.1| DNA ligase [Acinetobacter parvus DSM 16617 = CIP 108168]
Length = 659
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 241/584 (41%), Positives = 368/584 (63%), Gaps = 10/584 (1%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L + + +HN AYY+ D P ISD++YD L +LK +E++YPE + D+ T VG G
Sbjct: 9 QMRQLIQLIAKHNHAYYVMDQPCISDSEYDHLFHQLKALEQQYPECIQADTPTNKVG--G 66
Query: 77 GENSKY--VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLR 134
SK+ V H M+SL N F+ ED+ F +RI L + ++Y ELK DG+A++L
Sbjct: 67 QALSKFASVTHAVPMLSLGNVFNQEDLFAFARRIDERLP-NQKVQYDVELKLDGLAISLW 125
Query: 135 YEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYP--PELLEVRCEVLIYKKDFI 192
YE G L + TRGDG GE+IT N+ I +P VL+ ++ PE LEVR EVL+ K+ F
Sbjct: 126 YENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSSQHQAIPEFLEVRGEVLMPKQGFE 185
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
KLN + G K F NPRNAAAG LRQL+P I ++ L F+A+G+ + + + + +
Sbjct: 186 KLNADQEAKGDKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCQPNHGLETMHDS 245
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
L+W K G I + + + ++ + Y++I +R +L EIDG+V K++ L Q++LGF
Sbjct: 246 LHWLTKFGFEIAERQFLCASIEEVQQRYEQIQQERPDLKVEIDGMVIKVDSLKQQQQLGF 305
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
SR PR+A+AYKF ++ ALTK++ I+ Q+GRTG +TPVA L PV + G+T++ TLHN
Sbjct: 306 LSREPRWAIAYKFPAQAALTKVENIDWQVGRTGTLTPVARLTPVFVGGVTVSNVTLHNIG 365
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
EI+R +++IGDTV V+R+G+VIPK+ + RP D+++ +P CP+C S ++ E
Sbjct: 366 EIHRLDVRIGDTVSVYRTGDVIPKVEKVWVEFRPADTEMVNLPTNCPVCESPVVMPEGEA 425
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NF 490
+ARCSG + C AQR ++HF SRKA++I GLG + +E L++ +++ D+Y + +
Sbjct: 426 LARCSGG-LYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHLHEHR 484
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
LL ++++ K N++ AI+ SK TT +RFIY LGIR VGETTA+ LAN F+ L+ +
Sbjct: 485 DTLLTIEKMGEKSVQNLIDAIEASKKTTLARFIYGLGIRGVGETTARMLANTFQTLDALK 544
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW 594
A E L P +G T + F P + ++ +L GI+W
Sbjct: 545 AADVEALKKTPDVGDITAEWIADFFQAPHNIEVLDRLLAAGIHW 588
>gi|138893932|ref|YP_001124385.1| NAD-dependent DNA ligase LigA [Geobacillus thermodenitrificans
NG80-2]
gi|166215760|sp|A4IJY6.1|DNLJ_GEOTN RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|134265445|gb|ABO65640.1| DNA ligase [Geobacillus thermodenitrificans NG80-2]
Length = 670
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 247/664 (37%), Positives = 391/664 (58%), Gaps = 45/664 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R EL++ L+R+ YY+ D P + D +YD+L+ EL IE++YPEL T DS TQ +G
Sbjct: 9 RAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEKQYPELKTSDSPTQRIGGPP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E + V H MMSL N F++ D+ F++R+ E+ Y+ ELK DG+AV++RYE
Sbjct: 69 LEAFRKVTHRVPMMSLANAFNEGDLRDFDRRVRQEVG---EAAYVCELKIDGLAVSVRYE 125
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
GY Q +TRGDG GE+IT N+ I +PL LN P LE R E + K F++LN+
Sbjct: 126 DGYFVQGATRGDGTTGEDITENLKTIRSLPLRLN---EPVSLEARGEAFMPKASFLRLNE 182
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G + F NPRNAAAG LRQL+PK+ ++ L F +G+ + + SHS L++
Sbjct: 183 ERQARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLANAEELGI-ESHSAALSYL 241
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
Q +G + E + ++++I F + KR LPYEIDG+V K++ + Q++LG T+++
Sbjct: 242 QSLGFKVNPERRRCATIDEVIAFVNEWKEKRPQLPYEIDGIVIKVDSFAQQRQLGATAKS 301
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T + I + +GRTG +TP A+L+PV + G T+ RATLHNE I
Sbjct: 302 PRWAIAYKFPAEEVVTTLIGIEVNVGRTGAVTPTAILEPVRVAGTTVQRATLHNEDFIRE 361
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD V++ ++G++IP++ ++ R D F +P CP C S+++ ++ + RC
Sbjct: 362 KDIRIGDAVIIKKAGDIIPEVVGVVVDRRDGDEVPFTMPTHCPECESELVRLDGEVALRC 421
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+C AQ + L HF+SR AMNI GLG+K++ +L NA +V DLY++ + L+ L
Sbjct: 422 LNP--KCPAQLRERLIHFASRSAMNIEGLGEKVVTQLFNAGLVHDVADLYQLTKEQLVGL 479
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N+L AI+ SK + R ++ LGIR+VG A+ LA +F+ +E + AT+++
Sbjct: 480 ERMGEKSAANLLAAIEASKQNSLERLLFGLGIRYVGAKAAQLLAEHFETMERLEAATKDE 539
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI--------YWLNNPNTK------- 601
L+ +P+IG + + +QP L+++LR G+ P +
Sbjct: 540 LMAVPEIGEKMADSITTYFSQPEAVELLNELRTYGVNMAYKGRKRTAETPASSVLAGKTV 599
Query: 602 ---------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
GG+V +S++T+ ++ G+ G KL+KA +L I+I DE
Sbjct: 600 VLTGKLASMSRNEAKEQIERLGGRVTGSVSRSTDIVIAGEDAGSKLDKAQQLGIEIWDET 659
Query: 641 NFVK 644
F++
Sbjct: 660 RFLQ 663
>gi|303247047|ref|ZP_07333322.1| DNA ligase, NAD-dependent [Desulfovibrio fructosovorans JJ]
gi|302491473|gb|EFL51358.1| DNA ligase, NAD-dependent [Desulfovibrio fructosovorans JJ]
Length = 693
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/681 (37%), Positives = 398/681 (58%), Gaps = 54/681 (7%)
Query: 15 SFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGL 74
+ R+ EL+ ++H H+ YY+ D+P+I D YD L EL+K+E +PEL +S T+ VG
Sbjct: 8 AARLRELRAQIHEHDYRYYVLDDPVIEDAAYDALYRELRKLETAHPELDDPNSPTKRVG- 66
Query: 75 VGGENSKYVH--HTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNI---EYIAELKFDGI 129
G +V H M SLDN S+E+ F R N+L+ + + KFDG+
Sbjct: 67 -GTVLPAFVSKPHRLAMYSLDNAMSEEEWRDFVTRAANKLEREGQPFTRTFWVDPKFDGL 125
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLN-----IKYP-PELLEVRCE 183
A+ + YE G A TRGDG +GE++T N+ + +PL L P P LLEVR E
Sbjct: 126 ALEIIYENGVYAGALTRGDGEVGEDVTENVRTVKNVPLDLRPHAVRANLPVPALLEVRGE 185
Query: 184 VLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELR 241
V++ ++DF +LN+ + G K F NPRNAAAG +RQL+ KI+ ++ L FFA+ +G +
Sbjct: 186 VVMTRQDFYELNERQREQGGKIFANPRNAAAGSVRQLDSKISASRPLTFFAYAIGAQDWA 245
Query: 242 GMNMP-SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYK 300
G + ++HS ++ K+GL + E V +G + + ++K + ++R +LP+EIDGVV K
Sbjct: 246 GADPGWTTHSGIMAGLGKLGLPVAREGKV-AGEDAVYPYFKTMGVRRPDLPFEIDGVVVK 304
Query: 301 INCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDG 360
++ L+ Q+ LGFT RAPRFA+A KF + EA T +K I +Q+GRTG++TPVA+L+PV + G
Sbjct: 305 VDSLADQEALGFTGRAPRFAIALKFPAHEAETVLKRIEVQVGRTGVLTPVAILEPVSLAG 364
Query: 361 ITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPI 420
+T++RATLHNE EI K+++ GDTVVV R+G+VIP++ + RP D++ F P+ICP
Sbjct: 365 VTVSRATLHNEDEIKAKDLRAGDTVVVRRAGDVIPEVVRVVPEKRPADAEPFPFPHICPS 424
Query: 421 CNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVV 480
C+S + RC + C A + G+ +F S+ ++I G+G K ++ L++ +V
Sbjct: 425 CHSPAVRAPGEAAWRCVN--LACPAMLRRGIAYFVSKSGLDIEGIGNKWVKTLIDKGMVK 482
Query: 481 TAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKL-TTFSRFIYALGIRHVGETTAKEL 539
T DL+ + +L+ ++R++ K A N + A++K++ T ++ I ALG+R VG TA+ L
Sbjct: 483 TPADLFNLTEMDLIPMERMAEKSAANFVAAVEKAQQNATLAKLIAALGMRQVGTRTARTL 542
Query: 540 ANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPN 599
A +F++L+ + AT E L +P IG + +F + +R LI + R +G++ ++ P
Sbjct: 543 AEHFRDLDGLAAATSEDLTALPDIGPEVAGSIREFFDNAANRELIERFRQIGLWPVSEPK 602
Query: 600 T----------------------------------KGGKVVNFISKNTNYLVKGQKPGKK 625
T GG+V+ ISK +YLV G PG K
Sbjct: 603 TAVPPEATPLGGKKFLFTGTLPGMSREKAEALVEAAGGRVMKSISKKLDYLVVGADPGSK 662
Query: 626 LEKAIKLNIKILDEKNFVKIV 646
L KA L I ILD + F +++
Sbjct: 663 LAKAQSLGITILDAEAFQELL 683
>gi|42521704|ref|NP_967084.1| DNA ligase [Bdellovibrio bacteriovorus HD100]
gi|81618744|sp|Q6MRL9.1|DNLJ_BDEBA RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|39574234|emb|CAE77738.1| DNA ligase [Bdellovibrio bacteriovorus HD100]
Length = 684
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 256/664 (38%), Positives = 386/664 (58%), Gaps = 40/664 (6%)
Query: 10 NFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLT 69
N+S R ELKK + H+ Y++ D P I+D +YDQL EL IE+ L DS +
Sbjct: 16 NYSMSKKRHEELKKIISEHDHNYHVLDKPTITDYEYDQLFAELLDIEKNPKGLDLSDSPS 75
Query: 70 QHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGI 129
Q VG E H M+SL N +S ED+ F++R+ L +EY+ ELKFDG+
Sbjct: 76 QRVGGTVLEGFTKAQHRLPMLSLANSYSPEDIFEFDERVRKFLNTEDPVEYLCELKFDGL 135
Query: 130 AVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKK 189
++ L YE G L +A TRGDG +GE++T NI I IPL L+ K PP LLEVR EVL++K+
Sbjct: 136 SMELIYENGQLVRAITRGDGTVGEDVTHNIKTIKSIPLKLSHKNPPPLLEVRGEVLMFKE 195
Query: 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSH 249
DF +LN+ + G + F NPRNAAAG +RQL+ +I ++ L FF + +G + G ++
Sbjct: 196 DFARLNETQQENGQQTFANPRNAAAGTVRQLDSRIAASRPLRFFGYALGAVEGETF-NTQ 254
Query: 250 SELLNWYQKIGLSICGEYS-----VLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCL 304
+ ++ G+ Y V G +++++Y I R LP++IDGVV K+N L
Sbjct: 255 KNIQEYFNDHGIPTVLPYKEDLLVVAKGPEEVVKYYHHIEKVRPKLPFDIDGVVIKVNSL 314
Query: 305 STQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITIT 364
Q+ LG +R+PR+A A KF ++A T ++ I +Q+GRTG +TPVA++KPV + G+T+T
Sbjct: 315 RLQEDLGLVARSPRWATAAKFKPEQAQTTVEDIVVQVGRTGALTPVAIMKPVKVGGVTVT 374
Query: 365 RATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSI-LSLRPNDSKIFKIPNICPICNS 423
ATLHN+ EI RK+I+IGDTV++ R+G+VIP++ + RP D + IP CP C+S
Sbjct: 375 NATLHNQDEITRKDIRIGDTVIIQRAGDVIPEVVEVVNPDKRPADRLPYSIPERCPACDS 434
Query: 424 KIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAV 483
+ E ++ RC CIA K L+HF +R+AMNI +G ++IE LV+ ++
Sbjct: 435 VAVKAEGEVVTRCVNPL--CIAVVKESLKHFVARRAMNIDKVGDRLIETLVDNKLLTRFS 492
Query: 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYF 543
D Y++ + +L L+R +K A+NI+ +I+ SK T +RFI+ALGIR VGE T K LA++F
Sbjct: 493 DFYRLTKEQILSLERQGDKSADNIIKSIENSKNPTLARFIFALGIRFVGEQTGKHLADHF 552
Query: 544 KNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNP----- 598
++ +A+EE+LL +P+IG+ K+ + P + + ++G+ + P
Sbjct: 553 LTIDKFLEASEEELLQVPEIGAKVAKSIRDWTGNPKLVDEVKAMIELGVK-IAGPVRAQE 611
Query: 599 -------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLN 633
GGK++ +S NYLV G PG K+EKA L
Sbjct: 612 GSLSGMSFLITGTLPVKRDDAKDLIERNGGKILGSVSSKLNYLVVGDDPGSKVEKAQGLG 671
Query: 634 IKIL 637
+KI+
Sbjct: 672 VKII 675
>gi|149928191|ref|ZP_01916436.1| DNA ligase (NAD+) [Limnobacter sp. MED105]
gi|149823082|gb|EDM82322.1| DNA ligase (NAD+) [Limnobacter sp. MED105]
Length = 597
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 233/564 (41%), Positives = 357/564 (63%), Gaps = 5/564 (0%)
Query: 25 LHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVH 84
L+R AYY+ D P + D++YD++ L++IE +PEL+ DS TQ VG + + V
Sbjct: 34 LNRWEYAYYVLDAPEVPDSEYDKVYRSLQQIENNHPELIQNDSPTQRVGGKPADGFEQVR 93
Query: 85 HTFKMMSLDNGFSDEDVIIFNKRITN--ELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQ 142
H M+SL N F D DV+ F++R+ +L + I Y + KFDG+A+++ Y G Q
Sbjct: 94 HRVPMLSLGNAFEDSDVLAFDRRVKELADLPIDTTIAYAVDPKFDGLAISIHYTNGMFDQ 153
Query: 143 ASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLG 202
A TRGDG +GE+++ N+ I +PL L P LE+R E+ + KKDF+++N+ + LG
Sbjct: 154 AITRGDGTVGEDVSANVKTIRSLPLKLKGSVVPAHLEIRGEIFMTKKDFLQMNQRQAELG 213
Query: 203 LKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG-ELRGMNMPSSHSELLNWYQKIGL 261
LK F NPRNAAAG +RQL+PK+ ++ L F+ +G E + S S ++ W +GL
Sbjct: 214 LKVFANPRNAAAGTIRQLDPKVAASRPLRFYCYGAALEREQLRELKSQSAMMKWLAALGL 273
Query: 262 SICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFAL 321
+ +G L+ FY+ + +R LP+EIDGVVYK++ Q +LG+ ++APRFA+
Sbjct: 274 PVSELSQTATGAEGLLSFYRSVGGRRSTLPFEIDGVVYKVDSFDLQDQLGYVAKAPRFAV 333
Query: 322 AYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQI 381
A+KF E L+++ I +Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI RK++++
Sbjct: 334 AHKFPPDEVLSRLLNIEVQVGRTGSITPVAKLEPVKVGGVVVSSATLHNLDEIQRKDLRV 393
Query: 382 GDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWI 441
GD V+V R+G+VIP++ + R S F +P CPICNS + E RC+G +
Sbjct: 394 GDQVLVRRAGDVIPEVLPFPGNQRSPVSSAFVMPTHCPICNSLVRKEEGEAAFRCTGGLV 453
Query: 442 ECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSN 501
C AQ + HF+ R+A++I GLG K++E LV+ V T DL+++ F L++L+R+ +
Sbjct: 454 -CKAQLTQSIIHFAHRRAIDIEGLGSKLVEVLVDKEWVKTPADLFRLEFDALVQLERMGD 512
Query: 502 KLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIP 561
K A N+L +I K+K TTF RF++ LGIRHVGE TA++LA YFKN+E + A+EE+LL +
Sbjct: 513 KSARNLLDSIDKAKQTTFGRFLFGLGIRHVGEATARDLAAYFKNVERLMNASEEELLEVT 572
Query: 562 KIGSTTVKAFIKFI-NQPLHRLLI 584
+G + + F+ NQP+ +L +
Sbjct: 573 MLGLWWLHPYGNFLMNQPISKLFV 596
>gi|392393032|ref|YP_006429634.1| NAD-dependent DNA ligase [Desulfitobacterium dehalogenans ATCC
51507]
gi|390524110|gb|AFL99840.1| DNA ligase, NAD-dependent [Desulfitobacterium dehalogenans ATCC
51507]
Length = 659
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 248/666 (37%), Positives = 388/666 (58%), Gaps = 38/666 (5%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
S +S R+ L++++ N YY D P +SD +YD L+ EL ++EE++PE LT DS +Q
Sbjct: 1 MSDVSQRIKALREQIEEANYQYYGLDQPTLSDAEYDTLILELIRLEEEHPEFLTSDSPSQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG + V H ++SLDN F+ D++ F++R+ + + +EY+ ELK DG+
Sbjct: 61 RVGGYIAKEFPKVRHAEALLSLDNAFNAGDLLEFDRRVRS---MVAEVEYVVELKIDGLT 117
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
V L YE G L + +TRGDG +GE IT N+ I IPL L + L+VR E + K
Sbjct: 118 VALTYEDGVLVRGATRGDGEVGEEITANVKTIPAIPLRL--RKSGGRLDVRGEGYMPKGS 175
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F++LN+ R G F NPRNAAAG LRQL+ KI + L +FA+ V G + +S S
Sbjct: 176 FLRLNQEREDAGQPLFANPRNAAAGSLRQLDSKITAQRKLGYFAYQVLTPEGAEL-ASQS 234
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
+L++ ++ G S+ EY V + + +I + +++ KR N PY+IDG+V K+N ++ Q++L
Sbjct: 235 AVLDYLKEQGFSVNPEYRVFTAIEDVITYCEEVVGKRHNYPYDIDGLVIKVNDIAQQREL 294
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
GFT+++PR+A+AYKF +++ T ++ I I++GRTG++TP A L PV + G T++RATLHN
Sbjct: 295 GFTAKSPRWAIAYKFPAEQVETVVEDIVIRVGRTGVLTPTANLTPVFVAGSTVSRATLHN 354
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
I K+++IGD V++ ++G+VIP++ ++ R +IF++P CP C S +I E
Sbjct: 355 LDNIRTKDVRIGDRVLIQKAGDVIPEVVKTLPEKRTGSERIFEMPQTCPECQSPVIREEG 414
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
RC+ I C A+++ + HF SR AMNI GLG +I +L+ A ++ A DLY + +
Sbjct: 415 EAAHRCTS--ITCPARQREAIIHFVSRDAMNIDGLGPAVIYQLLEAGLIKDAADLYALEY 472
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
L++L+R+ K A N+L AI+ SK + I+ LGIRHVGE K LA + +E +
Sbjct: 473 DPLVQLERMGKKSAENLLKAIEDSKERGLASLIFGLGIRHVGEKAGKILAQKYGTMEELE 532
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------- 601
+A E+L IP +G ++ +F Q + +LR G+ + K
Sbjct: 533 RAGVEELQEIPDVGPAMAQSVAQFFQQESTHHFLDKLRQAGVNMRAQRSAKPQIFAGKSI 592
Query: 602 ---------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
GGK + +SK T ++V G+K G KL KA +L I +L E+
Sbjct: 593 VVTGSLERWDRQYVETMIEEFGGKAASSVSKKTAFVVAGEKAGSKLIKAKELGIPVLTEE 652
Query: 641 NFVKIV 646
FVK++
Sbjct: 653 EFVKLL 658
>gi|148652285|ref|YP_001279378.1| DNA ligase [Psychrobacter sp. PRwf-1]
gi|190359276|sp|A5WCN7.1|DNLJ_PSYWF RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|148571369|gb|ABQ93428.1| DNA ligase, NAD-dependent [Psychrobacter sp. PRwf-1]
Length = 686
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 254/666 (38%), Positives = 387/666 (58%), Gaps = 46/666 (6%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L ++ +HN AYY+ D P ISDN+YDQL L ++EE+YPEL DS T VG +
Sbjct: 24 LIAQVRKHNNAYYVMDEPTISDNEYDQLRLSLIELEERYPELTQPDSPTASVGDNPLPSF 83
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELK-LTKNIEYIAELKFDGIAVNLRYEYGY 139
V H M+SL N F+ +D+ F +R+ + L +N EY E+K DG+AV+L+Y G
Sbjct: 84 SQVQHDIAMLSLGNIFNYQDLQEFMRRVNDRLSDADRNPEYEIEMKLDGLAVSLKYHNGQ 143
Query: 140 LKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRY 199
+ TRGDG +GE+IT N+ I+ IPLV+ ++LEVR EVL+ K F +LN+
Sbjct: 144 FVRGVTRGDGQMGEDITQNVKTINNIPLVIEAAQDIDVLEVRGEVLMPKAGFKRLNRLAQ 203
Query: 200 HLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSS---HSELLNWY 256
G K F NPRNAAAG LRQL+P + ++ L F+A+ V + +P + S L W
Sbjct: 204 ENGDKTFANPRNAAAGSLRQLDPAVAASRPLAFYAYSVNQ----GLPEAITLQSAALTWL 259
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+++G ++ ++ + ++ ++Y+ + KR +L +EIDG+V K++ L+ Q +LG SR
Sbjct: 260 KQLGFTVS-DFERVKTAQQVQDYYESMIQKRADLAFEIDGMVIKVDDLTLQSQLGALSRE 318
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A AYKF ++ +T + +I Q+GRTG +TPV L+PV + G+T++ TLHN EI R
Sbjct: 319 PRWATAYKFPAETVMTTLNSIEWQVGRTGQLTPVGKLEPVQVGGVTVSNVTLHNFGEIQR 378
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
+++ GDTV VHR+G+VIPK+T LRP + +P CP+C+S ++ E +ARC
Sbjct: 379 LDVRAGDTVSVHRAGDVIPKVTRVWHDLRPEGTSAVTLPTHCPVCDSPVVLPEGEALARC 438
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN--FKNLL 494
+G C AQ++ L HF SRKAM+I GLG++ + IV T D+Y +N L+
Sbjct: 439 TGELF-CPAQQQEALIHFVSRKAMDIDGLGERWLISFFEHGIVKTVADIYHLNEHADELV 497
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
L+++ K +N+L AI++SK TT +RFIYALGIR VGETTA+ LA YF +L + A+
Sbjct: 498 TLEKLGEKSVSNMLRAIEESKKTTLARFIYALGIRGVGETTAQNLAQYFGDLPELMGASI 557
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------- 594
+ L +P +G T + F + +I+ L+ G+YW
Sbjct: 558 DALEAVPDVGHITAELIYNFFRAEHNIEVINALQQAGVYWDKVEQQALDNLPLEGQTWVI 617
Query: 595 --------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
++ + K G KV +S T+ L+ G+K G KL KA L ++++ E
Sbjct: 618 TGTLVASGMSRDDAKAHLQALGAKVSGSVSAKTSALLAGEKAGSKLTKAQSLGVRVVLED 677
Query: 641 NFVKIV 646
F+K++
Sbjct: 678 EFLKMI 683
>gi|126649600|ref|ZP_01721841.1| NAD-dependent DNA ligase LigA [Bacillus sp. B14905]
gi|126593925|gb|EAZ87848.1| NAD-dependent DNA ligase LigA [Bacillus sp. B14905]
Length = 667
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/672 (37%), Positives = 396/672 (58%), Gaps = 48/672 (7%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+++ R+ EL K LH + AYY+ D P+++D+ YDQLL EL +EE P L+ DS TQ
Sbjct: 1 MNEIEQRIAELNKLLHEYGYAYYVLDKPVVADSVYDQLLHELIALEEANPSLIFPDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG E K V H + M+SL N F++ D+ F++++ + + Y+ ELK DG+A
Sbjct: 61 RVGGTVVEGFKKVTHDYPMLSLSNAFNEADLQEFDRKVRQ--AIGDHFSYVCELKIDGLA 118
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
++L+YE G Q +TRGDG +GE IT N+ IH IPL L P +EVR E + KK
Sbjct: 119 ISLKYENGVFVQGATRGDGVVGEEITANLKTIHAIPLRLK---EPITIEVRGEAYMPKKS 175
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAH---GVGELRGMNMPS 247
F KLN R G + F NPRNAAAG LRQL+PKI ++ L F + G GE+ G++
Sbjct: 176 FEKLNAQRADNGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEVYGID--- 232
Query: 248 SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQ 307
H+E+L++ + +G E S + +++ F + R +L YEIDG+V K++ + Q
Sbjct: 233 GHAEMLDYLEDLGFPSNKERQRCSTIEEVMAFIEHWTEHRPHLAYEIDGIVIKVDRYAQQ 292
Query: 308 KKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRAT 367
+LG+T+++PR+A+AYKF ++E +T + I++ +GRTG++TP A+L PV + G T+ RA+
Sbjct: 293 DELGYTAKSPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILTPVQVAGTTVQRAS 352
Query: 368 LHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIY 427
LHNE I K+I++GDTV++ ++G++IP++ ++ RP +S F++P CP+C+S++I
Sbjct: 353 LHNEDLIREKDIRLGDTVIIRKAGDIIPQVVGVLIEQRPENSVPFEMPQNCPVCDSELIR 412
Query: 428 IESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYK 487
IE + RC C AQ +++F SR AMNI GLG K++E+L+ A+++ DLY
Sbjct: 413 IEGEVALRCVNPA--CFAQIAESIKYFVSRNAMNIDGLGDKVVEQLLRADLIHDVSDLYH 470
Query: 488 INFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLE 547
+ + L+ L+R+ K A N++ AIQ SK + R + LGIRHVGE AK ++ F ++E
Sbjct: 471 LTIEQLVELERMGEKSATNLVNAIQASKENSMERLLIGLGIRHVGEKAAKIVSEQFGSME 530
Query: 548 CMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL-----------N 596
+ AT+EQL+ I +IG + +++ + +I +L +VG+ +
Sbjct: 531 AVMAATDEQLVAIYEIGDKMASSLVEYFSNDDAGAVIERLAEVGVNMTFKGKKVEVVVGD 590
Query: 597 NP------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKL 632
NP GG V +SK T+ ++ G+ G KL KA +L
Sbjct: 591 NPFAGKTIVLTGKLEQLTRNEAKAKIEELGGTVTGSVSKKTDLVIAGEDAGSKLAKAEQL 650
Query: 633 NIKILDEKNFVK 644
I++ +E+N ++
Sbjct: 651 GIEVWNEENLIE 662
>gi|392958496|ref|ZP_10324006.1| NAD-dependent DNA ligase LigA [Bacillus macauensis ZFHKF-1]
gi|391875522|gb|EIT84132.1| NAD-dependent DNA ligase LigA [Bacillus macauensis ZFHKF-1]
Length = 669
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 253/670 (37%), Positives = 389/670 (58%), Gaps = 43/670 (6%)
Query: 9 INFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSL 68
+N + RV E+++ L +++ YY+ D P + D +YD+LL EL ++E +P L + S
Sbjct: 1 MNEEQAKQRVKEVRELLEKYSYEYYVLDQPTVPDAEYDRLLQELIELENNHPTLRDEHSP 60
Query: 69 TQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDG 128
T VG + + V H M+SL N F++ED+ F++R+ N + N+ Y+AELK DG
Sbjct: 61 TVRVGGQVLDFFRKVEHKVPMLSLGNAFNEEDLRDFDRRVRN--AVGDNVSYVAELKIDG 118
Query: 129 IAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYK 188
+AV+L YE G +TRGDG IGE+IT N+ IH IPL +K LEVR E + K
Sbjct: 119 LAVSLTYEEGRFVLGATRGDGTIGEDITNNLRTIHAIPL--KVKGEAVSLEVRGEAYMPK 176
Query: 189 KDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSS 248
+ F KLN+ R G + F NPRNAAAG LRQL+PKI + L F +G+G+L G +
Sbjct: 177 RSFQKLNEARQEEGQELFANPRNAAAGSLRQLDPKIAAKRNLSIFVYGMGQLAGKTI-EH 235
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
HSE L++ ++ G E+ + +I F +R +L YEIDG+V K++ Q+
Sbjct: 236 HSEGLHFLKEAGFKTNPEWKQCDTIEDVITFVHSWGERRPHLDYEIDGIVIKVDSYYQQE 295
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
+LGFT+++PR+A+AYKF ++E +TK+ I + +GRTG+ITP ALL+PV + G T+ RA+L
Sbjct: 296 ELGFTAKSPRWAIAYKFPAEEVVTKLLGIELSVGRTGVITPTALLEPVAVAGTTVKRASL 355
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYI 428
HNE I K+I+IGD VVV ++G++IP++ + I+ R + + F +P CP C SK+ +
Sbjct: 356 HNEDLIREKDIKIGDYVVVKKAGDIIPEVVNVIVDRRTGEEEEFHMPEACPACESKLERL 415
Query: 429 ESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488
+ + RC C AQ + GL HF SR AMNI GLG+K+I +L ++ DLY +
Sbjct: 416 DGEVALRCLNPM--CPAQIREGLIHFVSRNAMNIDGLGEKVISQLFAEQLITDVADLYDL 473
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
+ L++L+R+ K +N+L AI+KSK + R ++ LGIRHVG AK +A F+ ++
Sbjct: 474 KKEELVKLERMGEKSVDNLLDAIEKSKENSLERLLFGLGIRHVGAKAAKTIAQRFETMDA 533
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI---------------- 592
+ A++E+LL I ++G + + ++P ++LI +LRD G+
Sbjct: 534 VMMASKEELLAIDEVGEKMADSVAVYFSKPEVKVLIDELRDFGVNLTYKGPKIVKAEDID 593
Query: 593 ----------------YWLNNPNTK----GGKVVNFISKNTNYLVKGQKPGKKLEKAIKL 632
+ N + G KV +SKNT+ L+ G+ G KLEKA L
Sbjct: 594 SSFAGKIVVLTGKLSLFTRNEAKERLEALGAKVTGSVSKNTDLLIAGEDAGSKLEKAQTL 653
Query: 633 NIKILDEKNF 642
+ + E+ F
Sbjct: 654 GVAVWSEQQF 663
>gi|323490410|ref|ZP_08095622.1| DNA ligase [Planococcus donghaensis MPA1U2]
gi|323395909|gb|EGA88743.1| DNA ligase [Planococcus donghaensis MPA1U2]
Length = 668
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 255/668 (38%), Positives = 388/668 (58%), Gaps = 44/668 (6%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
K RV EL + L + AYY+ D P + D YDQLL EL +E YP+L+ DS TQ V
Sbjct: 5 KAEQRVDELNEMLRNYGHAYYVLDKPAVPDAIYDQLLNELIDLETLYPDLVFPDSPTQRV 64
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
G V H M+SL N F +ED+ F+KR+ + ++Y+ ELK DG+AV+
Sbjct: 65 GGAPLSTVDKVTHERPMLSLSNVFGEEDLREFDKRVRS--GAGDKVDYVCELKIDGLAVS 122
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
L YE G + +TRGDG +GE+IT N+ I IPL L LEVR EV + KK F
Sbjct: 123 LLYEDGKFVKGATRGDGRVGEDITVNLRTIRAIPLKLKDAV---TLEVRGEVFMPKKSFH 179
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
LN+ R G + F NPRNAAAG LRQL+PKI ++ L F +G+G + H E
Sbjct: 180 ALNEQRSEQGEELFANPRNAAAGSLRQLDPKIAASRNLDVFIYGIGGDGETYRLAEHDES 239
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
L++ K+G E V + V +++ + +K KR +LPYEIDG+V K+N Q++LGF
Sbjct: 240 LDYLAKLGFKTNQERQVCTSVEEVLAYIEKWTEKRNDLPYEIDGIVIKVNQFLYQQELGF 299
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
T+++P++A AYKF ++E +T ++ I + +GRTG++TP A+L PV + G T+ RA+LHNE
Sbjct: 300 TAKSPKWATAYKFPAEEVMTTVRDIELSVGRTGVVTPTAILDPVSVAGTTVQRASLHNED 359
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
I K+I+IGD V++ ++G++IP++ S IL R + F++P CP C+S+++ IE +
Sbjct: 360 LIKEKDIRIGDKVIIRKAGDIIPEVVSVILDQRTGEELPFEMPTHCPACDSELVRIEGEV 419
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
RC +C AQ GL HF SR AMNI GLG+K+IE+L +V D+YK+ +
Sbjct: 420 ALRCVNP--QCPAQITEGLIHFVSRNAMNIDGLGEKVIEQLYREGLVHDISDIYKLTKEQ 477
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
L+ LDR+++K A+N++ AI S+ + + ++ LGIRHVGE A+ L+ +F LE + A
Sbjct: 478 LVELDRMADKSASNLVAAIDASRSNSMEKLLFGLGIRHVGERGARILSEHFGTLEQLIAA 537
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK----------- 601
T+E+L+ + +IG + + + + R L+ +LR+ + L+ T+
Sbjct: 538 TKEELIEVHEIGDKMADSIVMYFDNEEVRALVERLREANVN-LSYTGTRVRVEEGANAFA 596
Query: 602 -------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
GGK+ +SK T+ L+ G++ G KL+KA +L ++I
Sbjct: 597 GKKIVLTGKLEQMTRQEASAQIEALGGKLTGSVSKKTDLLIAGEEAGSKLDKARELKVEI 656
Query: 637 LDEKNFVK 644
DE+ V+
Sbjct: 657 WDEERLVE 664
>gi|221632243|ref|YP_002521464.1| NAD-dependent DNA ligase [Thermomicrobium roseum DSM 5159]
gi|254781441|sp|B9KXM2.1|DNLJ_THERP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|221155911|gb|ACM05038.1| DNA ligase, NAD-dependent [Thermomicrobium roseum DSM 5159]
Length = 695
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 249/678 (36%), Positives = 388/678 (57%), Gaps = 46/678 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV EL++ + R+N YY+ + P +SD +YD L+ EL++ EE+YPEL+T DS TQ VG
Sbjct: 19 RVEELRRLIQRYNYEYYVLNAPTVSDAEYDALMLELRRWEEQYPELVTPDSPTQRVGAPP 78
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E V H M+SL N FSD ++ + +R+ L +++E++ E K DG+AV+L Y
Sbjct: 79 AEGFATVQHEIPMLSLGNVFSDGEIRAWAERVYR-LSGRQDVEFVTEPKVDGLAVSLLYR 137
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPE------LLEVRCEVLIYKKD 190
G L + +TRGDG GE++T N+ I IPL L YPPE +LEVR EV + +D
Sbjct: 138 DGVLVRGATRGDGYTGEDVTNNVRTIRMIPLRL---YPPEGVIVPPVLEVRGEVYMNVRD 194
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250
F +LN+ R GL F NPRNAAAG LRQL+P + ++ L F A +G G P++H
Sbjct: 195 FERLNRERGEQGLPLFANPRNAAAGSLRQLDPSVTASRPLRFAAWDIGLWEGTEPPATHL 254
Query: 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKL 310
L + +++ + + +Y + V+++I + +R L +E DGVV K+N + + L
Sbjct: 255 ATLEFLRQLQIPVVPDYRLCRSVDEVIAECHRWQERRDALEFEADGVVIKVNDRALYQAL 314
Query: 311 GFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHN 370
G R PR A AYKF + E T ++ + +GRTG +TPVA+L+PV I G+ + RATLHN
Sbjct: 315 GVVGREPRGATAYKFPAHEKTTIVRDVIWSVGRTGKLTPVAVLEPVEIGGVIVERATLHN 374
Query: 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIES 430
E EI R + IGD VVV R G+VIPK+ ++I R D + IP CP+C + I +E
Sbjct: 375 EEEIRRLGLLIGDAVVVQRRGDVIPKVVATIPQRRDGDERPVDIPRQCPVCGAHTIRLEG 434
Query: 431 NLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490
+ C C A+ KA ++HF+SR AM+I GLG+K+ + V+ I+ + DLY+I++
Sbjct: 435 EVDRYCPNP--NCPARLKASVRHFASRNAMDIEGLGEKISDLFVDLGIIRSLPDLYEIDW 492
Query: 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMF 550
+L+L+ K N+ AI+ SK F+RF++ALGIRHVGE A+ LA++F++++ +
Sbjct: 493 ARVLQLEGFGPKKVENLRKAIEASKNRPFARFLFALGIRHVGERNAQLLADHFRSIDRLM 552
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW----------LNNP-- 598
+AT ++LL IP G ++ +F +P +R +I + R +G+ + P
Sbjct: 553 EATIDELLQIPGFGPAVAQSVFEFFREPKNREMIERFRRLGVRMAEEEAAAVATVQGPLA 612
Query: 599 ----------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
G V + +S+ T+Y+ G PG K +A +L + I
Sbjct: 613 GKTVVLTGRLETLTRSQAEELLRRAGAHVTDSVSRKTDYVFAGADPGSKYVRAQQLGVPI 672
Query: 637 LDEKNFVKIVKGFSTETK 654
L E++ +++++ E +
Sbjct: 673 LGEEDLLRMLRESGIEVE 690
>gi|400405469|ref|YP_006588328.1| NAD-dependent DNA ligase [secondary endosymbiont of Ctenarytaina
eucalypti]
gi|400363832|gb|AFP84900.1| DNA ligase, NAD-dependent [secondary endosymbiont of Ctenarytaina
eucalypti]
Length = 675
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 252/667 (37%), Positives = 391/667 (58%), Gaps = 43/667 (6%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ L+ +L YY+ +P + D++YD+++ EL+ +E K +LLT +S +Q VG
Sbjct: 9 ILRLRAKLQHWEDLYYVASSPEVPDSEYDRMMAELRVLETKRQDLLTVNSPSQRVGGHAQ 68
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
+ V H M+SLDN F + D + F++R+ LK +++ Y ELK DG+AV+L YE
Sbjct: 69 HSFGQVRHHVPMLSLDNVFEESDFLAFDQRLRERLKCYEDLTYCCELKLDGLAVSLLYER 128
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYP--PELLEVRCEVLIYKKDFIKLN 195
G L + ++RGDG GE+IT NI +I +PL L + P LLE+R EV + + F KLN
Sbjct: 129 GELVRGASRGDGTTGEDITANIRVIRTVPLRLRGETSSLPRLLEIRGEVFMPEAGFQKLN 188
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
G K F NPRNAA+G LRQL+P I + L F +GVG L +P SH + L
Sbjct: 189 HAAKRNGGKVFANPRNAASGSLRQLDPAITAQRPLMFSCYGVGLLEHGMLPDSHWQRLQQ 248
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ G+S+ + + +G + + +FY+K+ R L ++IDGVV K++ L Q++LG +R
Sbjct: 249 LKSWGVSVSDQMRLCTGTDAVQKFYQKVYKARSTLGFDIDGVVIKVDALLLQQRLGVVAR 308
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A+AYKF ++E +T+++ + Q+GRTG+ITPVA L+PVL+ G +T+A+LHN EI
Sbjct: 309 APRWAIAYKFPAQEEITRVRDVAFQVGRTGVITPVAKLEPVLVSGTMVTKASLHNADEIN 368
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
R ++IGD +V R+G+VIP+I I S RP ++++ P+ CP C++++ ++ ++ R
Sbjct: 369 RLGVRIGDAAIVRRAGDVIPQIVGVISSKRPKNARLVAFPSQCPSCSTELEHVGGAVVLR 428
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C + C AQ + L+HF SR+AMNI G+G K I++LV +V T DL+++ L +
Sbjct: 429 CPAGLV-CSAQLQEALKHFVSRRAMNITGIGDKTIDQLVQRALVKTPADLFRLTKDILRQ 487
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
LD V K A N+L A++K+K +TF+RF+YALGIR VGETTA+ LA + L+ + A
Sbjct: 488 LDHVGPKAAQNLLDALEKAKKSTFARFLYALGIREVGETTAENLAAAYGTLDSLIAADIH 547
Query: 556 QLLNIPKIGSTTVKAFIKFI----NQPLHRLLISQLRDVGIYWLNN--PNTK-------- 601
L + IG+ KF N + R L+S +GI+W + P+T+
Sbjct: 548 SLTEVKNIGNIAATHVQKFFEIRHNLKVVRELLSP--PIGIHWPVSVVPSTEEESCFFSG 605
Query: 602 ------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKIL 637
G +V N IS T+ L+ G+ G KL KA +L+I ++
Sbjct: 606 KTVVLTGVLRSLSRDAAKDRLVSLGARVSNRISATTDLLIVGELAGSKLFKAQQLSIPMM 665
Query: 638 DEKNFVK 644
DE ++
Sbjct: 666 DEAEMIR 672
>gi|189425977|ref|YP_001953154.1| NAD-dependent DNA ligase [Geobacter lovleyi SZ]
gi|254781338|sp|B3E8F8.1|DNLJ_GEOLS RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|189422236|gb|ACD96634.1| DNA ligase, NAD-dependent [Geobacter lovleyi SZ]
Length = 683
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 255/663 (38%), Positives = 372/663 (56%), Gaps = 35/663 (5%)
Query: 16 FRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLV 75
R EL++ L HN YY D+P ISD +YD L EL+ IE P+LLT DS T VG
Sbjct: 18 LRAAELRRLLEHHNRCYYELDSPEISDAEYDALFRELQVIEAARPDLLTPDSPTLRVGGK 77
Query: 76 GGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKL--TKNIEYIAELKFDGIAVNL 133
V H M+SL+N ++++ F +RI + L L T ++Y E K DG+AV L
Sbjct: 78 PLARFSQVRHRMPMLSLENAMQEDEIRGFEQRIRSLLALPDTVALQYQCEPKMDGLAVEL 137
Query: 134 RYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIK 193
Y+ G L QASTRGDG +GE +T NI + +PL L P LLEVR EV + F +
Sbjct: 138 VYQDGLLVQASTRGDGEVGEEVTANIRTVRNVPLRLTGDNLPALLEVRGEVYLPLAAFQQ 197
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253
LN+ R G F NPRNAAAG +RQL+P + + L +GVG + + +EL+
Sbjct: 198 LNQQREEAGEPPFANPRNAAAGSIRQLDPAVVARRPLAMVCYGVGVME--TEARTQTELM 255
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
+ GL + + +SG+ I ++ + +R +L YEIDG+V K++ L Q++LG
Sbjct: 256 SQLAAWGLPVSDQARQVSGIEGAIACFQDLQERRDSLLYEIDGMVIKVDDLRLQQELGEK 315
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
SR+PR+A+A KF ++A T+I I + +GRTG+ITPVA L+PV + G+T++RATLHN E
Sbjct: 316 SRSPRWAIACKFPPRQATTRINEIILSVGRTGVITPVASLEPVELSGVTVSRATLHNWDE 375
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
I RK+I++GD V+V R+G+VIP + +L R + P CP+C S+ +
Sbjct: 376 IRRKDIRVGDRVIVERAGDVIPAVVKVLLDKRSGTEQELPEPETCPVCGSRAAREAGEVA 435
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
RC G + C Q + HF+SR AM+I GLG K IE+L++ +V DLY++ +
Sbjct: 436 VRCQGG-LACPPQLAESIIHFASRDAMDIDGLGSKYIEQLISLGLVKDIADLYRLTRDDF 494
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
++ +R+ +KLA N+L AI SK SRFI+ALGIRHVGE TA+ LA F +++ + AT
Sbjct: 495 MQFERMGDKLAENLLAAIASSKQQELSRFIFALGIRHVGERTARTLAERFGSIDNLQTAT 554
Query: 554 EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI--------------------- 592
E+L +I +G + F + P ++ ++ +L+ G+
Sbjct: 555 LEELTSIRDVGPAVAISIRSFFDAPANQTVLQRLKAAGVAPTVEEKRVGGRLAGLTFVFT 614
Query: 593 ---YWLNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
L K GG V +SK T+Y+V G + G KLEKA L I +L E F
Sbjct: 615 GTLATLGRDEAKKLVEAEGGNVTGSVSKKTDYVVAGSEAGSKLEKARNLGITVLSEDAFS 674
Query: 644 KIV 646
K++
Sbjct: 675 KLL 677
>gi|420140609|ref|ZP_14648355.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa CIG1]
gi|421161706|ref|ZP_15620636.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa ATCC 25324]
gi|403246623|gb|EJY60333.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa CIG1]
gi|404539013|gb|EKA48520.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa ATCC 25324]
Length = 794
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/596 (40%), Positives = 355/596 (59%), Gaps = 24/596 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ +L+ EL HN YY+ D P I D +YD+L EL+ +E +YP+LLT DS TQ V
Sbjct: 10 RIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLLTPDSPTQRVSGTP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT----------KNIEYIAELKF 126
V H M+SL N F ++D++ F++R+ L +EY E K
Sbjct: 70 ASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEVEYSCEPKL 129
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+AV+L YE G L + +TRGDG+ GE+IT+N+ I +PL L+ + PE+LEVR EV +
Sbjct: 130 DGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEILEVRGEVFM 189
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
K F LN G K F NPRNAAAG LRQL+ KI ++ L F A+G G++ G ++P
Sbjct: 190 SKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFGQVSG-SLP 248
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
+ +L ++ G+ I E ++ G ++Y I +R L YEIDGVV+K+N ++
Sbjct: 249 DTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVFKVNRIAF 308
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q++LGF +R PR+A+A+KF ++E LT++ + Q+GRTG +TPVA LKPV + G+T++ A
Sbjct: 309 QRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVAGVTVSNA 368
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKI- 425
TLHN E+ R ++IGDTVV+ R+G+VIP++ +L RP D++ ++P CP+C S +
Sbjct: 369 TLHNMDEVARLGLRIGDTVVIRRAGDVIPQVMQVVLERRPADAQAIEVPEHCPVCGSAVE 428
Query: 426 -----------IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLV 474
I I RC G + C AQ K + HF SR+AM+I GLG K++E+LV
Sbjct: 429 RTQLVKRSKGKESISEGAIYRCVGR-LSCQAQLKQAIIHFVSRRAMDIDGLGDKIVEQLV 487
Query: 475 NANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGET 534
+ +V + DLY + ++ + L+ + NN+L AI S+ + +RFI+ALGI VGE
Sbjct: 488 DRGLVASPADLYTLTYEQVFELEGFAELSTNNLLAAIADSRKPSLARFIFALGIPDVGEE 547
Query: 535 TAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDV 590
TAK LA +LE + KA E L +P +G+ F +R +I+QLRD
Sbjct: 548 TAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDA 603
>gi|241759788|ref|ZP_04757888.1| DNA ligase, NAD-dependent [Neisseria flavescens SK114]
gi|241319796|gb|EER56192.1| DNA ligase, NAD-dependent [Neisseria flavescens SK114]
Length = 859
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 257/657 (39%), Positives = 378/657 (57%), Gaps = 74/657 (11%)
Query: 8 KINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDS 67
+++ + + R+ L L+R+ YY D P + D +YD+L EL+ +E +PEL DS
Sbjct: 35 RLHMNPTAQRIKYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKLPDS 94
Query: 68 LTQHVGLVGGENSKYVHHTFKMMSLDNGFSDED---------VIIFNKRITNELKLTKNI 118
TQ VG V H M+SL N FS +D + F++R+ L K
Sbjct: 95 PTQRVGGEPLAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVHGGLNGEKP- 153
Query: 119 EYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELL 178
EY+ E KFDG+A++L Y G L QA+TRGDG GE++T N+ + IPL L+ + PEL+
Sbjct: 154 EYVIEPKFDGLAISLLYRDGVLTQAATRGDGTTGEDVTQNVKTVSNIPLRLHGENIPELI 213
Query: 179 EVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG 238
E+R EVL+ K DF LN + G K F NPRNAAAG LRQL+ +I + LHFF + +
Sbjct: 214 EIRGEVLMLKADFAALNARQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIA 273
Query: 239 ELRGMNMPSSHSELLNWYQKIGLSICGE-YSVLSGVNKLIEFYKKINIKRFNLPYEIDGV 297
+G + H + L++ +++G S+ + +++++ FY+++ KR LPYEIDG+
Sbjct: 274 RQQGGFIAEEHLQELSYCKELGFSLPDSNFGCFPNIDEVLAFYEQMQQKRPTLPYEIDGM 333
Query: 298 VYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVL 357
V K+N L+ Q+KLGF SRAPR+A+A+KF ++EALT ++AI++QIGRTG +TPVA L+PV
Sbjct: 334 VVKVNSLAQQEKLGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVF 393
Query: 358 IDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRP-NDSKI----- 411
+ G+T+T ATLHN+ E+ RK++++GDTVVV R+G+VIP++ I RP ++KI
Sbjct: 394 VGGVTVTNATLHNQDEVSRKDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQETKISVSDG 453
Query: 412 ---------------------FKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAG 450
+++P CPIC+S+I E +ARCSG + C AQR G
Sbjct: 454 LQDDLFAETPSETRSEPIHKPYRLPTHCPICHSEIEREEGEAVARCSGGML-CQAQRAQG 512
Query: 451 LQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL----DRVS------ 500
L HF+SRKAM+I GLG+K IE+LV ++V DLY+++ L ++ D+ S
Sbjct: 513 LIHFASRKAMDIDGLGQKQIEQLVAQDLVRHFADLYRLDIPTLQKMKETADKASANEEEP 572
Query: 501 -------------------------NKLANNILLAIQKSKLTTFSRFIYALGIRHVGETT 535
K A NIL I+ SK +RF++ALGIR+VGE T
Sbjct: 573 SNSEIEDFEGETGNTLLAKNVKKQPTKWAENILAGIEASKTPELARFLFALGIRYVGERT 632
Query: 536 AKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI 592
AK LA F LE + A E L +P IG+ ++ F Q + +I +L VG+
Sbjct: 633 AKTLAQAFGTLENVRHAPEPILACLPDIGTVVARSIAHFFAQKAQQAMIDELLAVGV 689
Score = 39.3 bits (90), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
GGKV +SK T+Y+V G+ G KLEKA L + +
Sbjct: 814 GGKVSGSVSKKTDYVVAGEAAGSKLEKAQTLGVAV 848
>gi|417347707|ref|ZP_12126842.1| DNA ligase [Salmonella enterica subsp. enterica serovar Gaminara
str. A4-567]
gi|353577517|gb|EHC39649.1| DNA ligase [Salmonella enterica subsp. enterica serovar Gaminara
str. A4-567]
Length = 593
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 238/592 (40%), Positives = 357/592 (60%), Gaps = 35/592 (5%)
Query: 89 MMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGD 148
M+SLDN F +E + FNKR+ + LK T+N+ + ELK DG+AV++ YE G L A+TRGD
Sbjct: 1 MLSLDNVFDEESFLAFNKRVQDRLKSTENVIWCCELKLDGLAVSILYENGVLVSAATRGD 60
Query: 149 GNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTN 208
G GE+IT+N+ I IPL L+ P LEVR EV + + F K+N+ G K F N
Sbjct: 61 GTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFAN 120
Query: 209 PRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYS 268
PRNAAAG LRQL+P+I + L FF +GVG L G +P +H L ++ GL + +
Sbjct: 121 PRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPDTHLGRLLQFKAWGLPVSDRVT 180
Query: 269 VLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSK 328
+ +++FY + R L ++IDGVV K+N L+ Q++LGF +RAPR+A+A+KF ++
Sbjct: 181 LCDSPQAVLDFYHNVEKDRPTLGFDIDGVVIKVNSLALQEQLGFVARAPRWAVAFKFPAQ 240
Query: 329 EALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVH 388
E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R ++IGD VV+
Sbjct: 241 EQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHNADEIERLGLRIGDKVVIR 300
Query: 389 RSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRK 448
R+G+VIP++ + +LS RP +++ P CP+C S + +E + RC+G I C AQRK
Sbjct: 301 RAGDVIPQVVNVVLSERPEETRPIVFPTHCPVCGSDVERVEGEAVTRCTGGLI-CGAQRK 359
Query: 449 AGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNIL 508
L+HF SR+AM++ G+G K+I++LV V T DL+++ L LDR+ K A N++
Sbjct: 360 ESLKHFVSRRAMDVDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGLDRMGPKSAQNVV 419
Query: 509 LAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTV 568
A++K+K TTF+RF+YALGIR VGE TA LA YF LE + AT ++L +P +G
Sbjct: 420 NALEKAKATTFARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVA 479
Query: 569 KAFIKFINQPLHRLLISQLRDVGIYW----------LNNP------------------NT 600
F + +R +I QL G++W +++P +
Sbjct: 480 THVFNFFAEESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDA 539
Query: 601 K------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
K G KV +SK T+ ++ G+ G KL KA +L I ++DE ++++
Sbjct: 540 KARLVAVGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLL 591
>gi|169831769|ref|YP_001717751.1| NAD-dependent DNA ligase [Candidatus Desulforudis audaxviator
MP104C]
gi|254781311|sp|B1I551.1|DNLJ_DESAP RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|169638613|gb|ACA60119.1| DNA ligase, NAD-dependent [Candidatus Desulforudis audaxviator
MP104C]
Length = 672
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 252/670 (37%), Positives = 390/670 (58%), Gaps = 42/670 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R EL++E+ H+ YY+ D+P+I D +YD+L+ EL +E YPEL+T DS TQ VG
Sbjct: 9 RAEELRREIEYHDHRYYVLDDPVIEDAEYDRLVRELVALETAYPELVTPDSPTQRVGGRP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E V H M+SL N F+ D+ F++R+ L ++++Y+ ELKFDG+AV+L YE
Sbjct: 69 REGFVTVQHRAPMLSLANAFNAADLADFDRRVRTGLA-DEDVDYVVELKFDGVAVSLTYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
+G L + +TRGDG GE IT N+ I IPL L P ++EVR EV + K+ F +LN+
Sbjct: 128 HGRLVRGATRGDGVTGEEITPNLRTIRSIPLRLRQPGAPNVIEVRGEVYMPKEAFARLNE 187
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R GL F NPRNAAAG LRQL+P I + L + +G+G G+ HSE L W
Sbjct: 188 RREDAGLPLFANPRNAAAGSLRQLDPGITAERKLDIWLYGIGYTDGIVF-GRHSEALAWL 246
Query: 257 QKIGLSICGE---YSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
+ G + +S L V + +E +++ RF LPY IDG+V K++ L Q++LG T
Sbjct: 247 GEQGFRVNPHTRIFSTLEEVERHLEHWRE---ARFELPYVIDGLVLKVDRLDQQERLGTT 303
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
++PR+A+AYK+ ++A T ++ I I++GRTG++TP A+L PV + G T++RA+LHNE
Sbjct: 304 LKSPRWAVAYKYPPEQAETTVEDIIIRVGRTGVLTPTAVLSPVRLAGTTVSRASLHNEDL 363
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
I K+I+IGD V++H++G++IP+I S R F +P CP C S ++ E +
Sbjct: 364 IREKDIRIGDVVLIHKAGDIIPEILGSRPEKRTGRETPFAMPVQCPECASLLVRPEGEVG 423
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
CS + C A+ + L HF SR A I GLG +I++L+ +V DL+ + + L
Sbjct: 424 VYCSN--VACPARLERSLLHFVSRNAFAINGLGPAVIQQLLERRLVADPADLFTLTREEL 481
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
+ L+R+ K A+N+L AIQ SK + +R I++LGIRHVGE A+ LA F +L + A
Sbjct: 482 VGLERIGPKSADNLLKAIQNSKRNSLARLIFSLGIRHVGERAARLLAERFGSLAGLMAAG 541
Query: 554 EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL-NNPNTK----------- 601
E+L +P+IG + + F + +R ++++L G+ + + P
Sbjct: 542 REELEAVPEIGPKIADSVLNFFAREQNRRVVAKLVRAGVNTVADRPAAAGTGPLAGKTFV 601
Query: 602 --------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
GG+VV+ +S+ T+Y+V G+ PG K +KA+KL + I++E
Sbjct: 602 LTGTLEEFSRAEAAARIEELGGRVVSNVSRRTDYVVLGKNPGGKYDKAVKLGVNIIEEPE 661
Query: 642 FVKIVKGFST 651
F +++ G +
Sbjct: 662 FKRLLSGIQS 671
>gi|254234624|ref|ZP_04927947.1| DNA ligase [Pseudomonas aeruginosa C3719]
gi|392985006|ref|YP_006483593.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa DK2]
gi|419755611|ref|ZP_14281966.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PADK2_CF510]
gi|421181390|ref|ZP_15638896.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa E2]
gi|424940733|ref|ZP_18356496.1| DNA ligase [Pseudomonas aeruginosa NCMG1179]
gi|126166555|gb|EAZ52066.1| DNA ligase [Pseudomonas aeruginosa C3719]
gi|346057179|dbj|GAA17062.1| DNA ligase [Pseudomonas aeruginosa NCMG1179]
gi|384398308|gb|EIE44716.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PADK2_CF510]
gi|392320511|gb|AFM65891.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa DK2]
gi|404543783|gb|EKA53018.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa E2]
Length = 794
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/596 (40%), Positives = 354/596 (59%), Gaps = 24/596 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ +L+ EL HN YY+ D P I D +YD+L EL+ +E +YP+LLT DS TQ V
Sbjct: 10 RIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLLTPDSPTQRVSGTP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT----------KNIEYIAELKF 126
V H M+SL N F ++D++ F++R+ L +EY E K
Sbjct: 70 ASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEVEYSCEPKL 129
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+AV+L YE G L + +TRGDG+ GE+IT+N+ I +PL L+ + PE+LEVR EV +
Sbjct: 130 DGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEILEVRGEVFM 189
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
K F LN G K F NPRNAAAG LRQL+ KI ++ L F A+G G++ G +P
Sbjct: 190 SKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFGQVSG-TLP 248
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
+ +L ++ G+ I E ++ G ++Y I +R L YEIDGVV+K+N ++
Sbjct: 249 DTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVFKVNRIAF 308
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q++LGF +R PR+A+A+KF ++E LT++ + Q+GRTG +TPVA LKPV + G+T++ A
Sbjct: 309 QRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVAGVTVSNA 368
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKI- 425
TLHN E+ R ++IGDTVV+ R+G+VIP++ +L RP D++ ++P CP+C S +
Sbjct: 369 TLHNMDEVARLGLRIGDTVVIRRAGDVIPQVMQVVLERRPADAQAIEVPEHCPVCGSAVE 428
Query: 426 -----------IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLV 474
I I RC G + C AQ K + HF SR+AM+I GLG K++E+LV
Sbjct: 429 RTQLVKRSKGKESISEGAIYRCVGR-LSCQAQLKQAIIHFVSRRAMDIDGLGDKIVEQLV 487
Query: 475 NANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGET 534
+ +V + DLY + ++ + L+ + NN+L AI S+ + +RFI+ALGI VGE
Sbjct: 488 DRGLVASPADLYTLTYEQVFELEGFAELSTNNLLAAIADSRKPSLARFIFALGIPDVGEE 547
Query: 535 TAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDV 590
TAK LA +LE + KA E L +P +G+ F +R +I+QLRD
Sbjct: 548 TAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDA 603
>gi|421168834|ref|ZP_15626890.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa ATCC 700888]
gi|404528336|gb|EKA38437.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa ATCC 700888]
Length = 794
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/596 (40%), Positives = 354/596 (59%), Gaps = 24/596 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ +L+ EL HN YY+ D P I D +YD+L EL+ +E +YP+LLT DS TQ V
Sbjct: 10 RIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLLTPDSPTQRVSGTP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT----------KNIEYIAELKF 126
V H M+SL N F ++D++ F++R+ L +EY E K
Sbjct: 70 ASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEVEYSCEPKL 129
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+AV+L YE G L + +TRGDG+ GE+IT+N+ I +PL L+ + PE+LEVR EV +
Sbjct: 130 DGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEILEVRGEVFM 189
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
K F LN G K F NPRNAAAG LRQL+ KI ++ L F A+G G++ G +P
Sbjct: 190 SKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFGQVSG-TLP 248
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
+ +L ++ G+ I E ++ G ++Y I +R L YEIDGVV+K+N ++
Sbjct: 249 DTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVFKVNRIAF 308
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q++LGF +R PR+A+A+KF ++E LT++ + Q+GRTG +TPVA LKPV + G+T++ A
Sbjct: 309 QRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVAGVTVSNA 368
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKI- 425
TLHN E+ R ++IGDTVV+ R+G+VIP++ +L RP D++ ++P CP+C S +
Sbjct: 369 TLHNMDEVARLGLRIGDTVVIRRAGDVIPQVMQVVLERRPADAQAIEVPEHCPVCGSAVE 428
Query: 426 -----------IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLV 474
I I RC G + C AQ K + HF SR+AM+I GLG K++E+LV
Sbjct: 429 RTQLVKRSKGKESISEGAIYRCVGR-LSCQAQLKQAIIHFVSRRAMDIDGLGDKIVEQLV 487
Query: 475 NANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGET 534
+ +V + DLY + ++ + L+ + NN+L AI S+ + +RFI+ALGI VGE
Sbjct: 488 DRGLVASPADLYTLTYEQVFELEGFAELSTNNLLAAIADSRKPSLARFIFALGIPDVGEE 547
Query: 535 TAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDV 590
TAK LA +LE + KA E L +P +G+ F +R +I+QLRD
Sbjct: 548 TAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDA 603
>gi|15596726|ref|NP_250220.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PAO1]
gi|107100960|ref|ZP_01364878.1| hypothetical protein PaerPA_01001990 [Pseudomonas aeruginosa PACS2]
gi|218892513|ref|YP_002441382.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa LESB58]
gi|386059580|ref|YP_005976102.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa M18]
gi|418587961|ref|ZP_13151980.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa MPAO1/P1]
gi|418593726|ref|ZP_13157559.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa MPAO1/P2]
gi|421154778|ref|ZP_15614274.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa ATCC 14886]
gi|421516163|ref|ZP_15962849.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PAO579]
gi|81541359|sp|Q9I3I4.1|DNLJ_PSEAE RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|254781394|sp|B7UVJ3.1|DNLJ_PSEA8 RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|9947487|gb|AAG04918.1|AE004581_5 DNA ligase [Pseudomonas aeruginosa PAO1]
gi|218772741|emb|CAW28526.1| DNA ligase [Pseudomonas aeruginosa LESB58]
gi|347305886|gb|AEO76000.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa M18]
gi|375041292|gb|EHS33999.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa MPAO1/P1]
gi|375046552|gb|EHS39112.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa MPAO1/P2]
gi|404349891|gb|EJZ76228.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PAO579]
gi|404521491|gb|EKA32081.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa ATCC 14886]
Length = 794
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/596 (40%), Positives = 354/596 (59%), Gaps = 24/596 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ +L+ EL HN YY+ D P I D +YD+L EL+ +E +YP+LLT DS TQ V
Sbjct: 10 RIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLLTPDSPTQRVSGTP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT----------KNIEYIAELKF 126
V H M+SL N F ++D++ F++R+ L +EY E K
Sbjct: 70 ASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEVEYSCEPKL 129
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+AV+L YE G L + +TRGDG+ GE+IT+N+ I +PL L+ + PE+LEVR EV +
Sbjct: 130 DGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEILEVRGEVFM 189
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
K F LN G K F NPRNAAAG LRQL+ KI ++ L F A+G G++ G +P
Sbjct: 190 SKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFGQVSG-TLP 248
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
+ +L ++ G+ I E ++ G ++Y I +R L YEIDGVV+K+N ++
Sbjct: 249 DTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVFKVNRIAF 308
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q++LGF +R PR+A+A+KF ++E LT++ + Q+GRTG +TPVA LKPV + G+T++ A
Sbjct: 309 QRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVAGVTVSNA 368
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKI- 425
TLHN E+ R ++IGDTVV+ R+G+VIP++ +L RP D++ ++P CP+C S +
Sbjct: 369 TLHNMDEVARLGLRIGDTVVIRRAGDVIPQVMQVVLERRPADAQAIEVPEHCPVCGSAVE 428
Query: 426 -----------IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLV 474
I I RC G + C AQ K + HF SR+AM+I GLG K++E+LV
Sbjct: 429 RTQLVKRSKGKESISEGAIYRCVGR-LSCQAQLKQAIIHFVSRRAMDIDGLGDKIVEQLV 487
Query: 475 NANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGET 534
+ +V + DLY + ++ + L+ + NN+L AI S+ + +RFI+ALGI VGE
Sbjct: 488 DRGLVASPADLYTLTYEQVFELEGFAELSTNNLLTAIADSRKPSLARFIFALGIPDVGEE 547
Query: 535 TAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDV 590
TAK LA +LE + KA E L +P +G+ F +R +I+QLRD
Sbjct: 548 TAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDA 603
>gi|451983256|ref|ZP_21931549.1| DNA ligase [Pseudomonas aeruginosa 18A]
gi|451759155|emb|CCQ84072.1| DNA ligase [Pseudomonas aeruginosa 18A]
Length = 794
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/596 (40%), Positives = 354/596 (59%), Gaps = 24/596 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ +L+ EL HN YY+ D P I D +YD+L EL+ +E +YP+LLT DS TQ V
Sbjct: 10 RIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLLTPDSPTQRVSGTP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT----------KNIEYIAELKF 126
V H M+SL N F ++D++ F++R+ L +EY E K
Sbjct: 70 ASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEVEYSCEPKL 129
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+AV+L YE G L + +TRGDG+ GE+IT+N+ I +PL L+ + PE+LEVR EV +
Sbjct: 130 DGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEILEVRGEVFM 189
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
K F LN G K F NPRNAAAG LRQL+ KI ++ L F A+G G++ G +P
Sbjct: 190 SKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFGQVSG-TLP 248
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
+ +L ++ G+ I E ++ G ++Y I +R L YEIDGVV+K+N ++
Sbjct: 249 DTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVFKVNRIAF 308
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q++LGF +R PR+A+A+KF ++E LT++ + Q+GRTG +TPVA LKPV + G+T++ A
Sbjct: 309 QRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVAGVTVSNA 368
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKI- 425
TLHN E+ R ++IGDTVV+ R+G+VIP++ +L RP D++ ++P CP+C S +
Sbjct: 369 TLHNMDEVARLGLRIGDTVVIRRAGDVIPQVMQVVLERRPADAQAIEVPEHCPVCGSAVE 428
Query: 426 -----------IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLV 474
I I RC G + C AQ K + HF SR+AM+I GLG K++E+LV
Sbjct: 429 RTQLVKRSKGKESISEGAIYRCVGR-LSCQAQLKQAIIHFVSRRAMDIDGLGDKIVEQLV 487
Query: 475 NANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGET 534
+ +V + DLY + ++ + L+ + NN+L AI S+ + +RFI+ALGI VGE
Sbjct: 488 DRGLVASPADLYTLTYEQVFELEGFAELSTNNLLTAIADSRKPSLARFIFALGIPDVGEE 547
Query: 535 TAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDV 590
TAK LA +LE + KA E L +P +G+ F +R +I+QLRD
Sbjct: 548 TAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDA 603
>gi|116049473|ref|YP_791724.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa UCBPP-PA14]
gi|421175394|ref|ZP_15633078.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa CI27]
gi|122258581|sp|Q02K12.1|DNLJ_PSEAB RecName: Full=DNA ligase; AltName: Full=Polydeoxyribonucleotide
synthase [NAD(+)]
gi|115584694|gb|ABJ10709.1| DNA ligase [Pseudomonas aeruginosa UCBPP-PA14]
gi|404532316|gb|EKA42216.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa CI27]
Length = 794
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/596 (40%), Positives = 354/596 (59%), Gaps = 24/596 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ +L+ EL HN YY+ D P I D +YD+L EL+ +E +YP+LLT DS TQ V
Sbjct: 10 RIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLLTPDSPTQRVSGTP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT----------KNIEYIAELKF 126
V H M+SL N F ++D++ F++R+ L +EY E K
Sbjct: 70 ASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEVEYSCEPKL 129
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+AV+L YE G L + +TRGDG+ GE+IT+N+ I +PL L+ + PE+LEVR EV +
Sbjct: 130 DGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEILEVRGEVFM 189
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
K F LN G K F NPRNAAAG LRQL+ KI ++ L F A+G G++ G +P
Sbjct: 190 SKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFGQVSG-TLP 248
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
+ +L ++ G+ I E ++ G ++Y I +R L YEIDGVV+K+N ++
Sbjct: 249 DTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVFKVNRIAF 308
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q++LGF +R PR+A+A+KF ++E LT++ + Q+GRTG +TPVA LKPV + G+T++ A
Sbjct: 309 QRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVAGVTVSNA 368
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKI- 425
TLHN E+ R ++IGDTVV+ R+G+VIP++ +L RP D++ ++P CP+C S +
Sbjct: 369 TLHNMDEVARLGLRIGDTVVIRRAGDVIPQVMQVVLERRPADAQAIEVPEHCPVCGSAVE 428
Query: 426 -----------IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLV 474
I I RC G + C AQ K + HF SR+AM+I GLG K++E+LV
Sbjct: 429 RTQLVKRSKGKESISEGAIYRCVGR-LSCQAQLKQAIIHFVSRRAMDIDGLGDKIVEQLV 487
Query: 475 NANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGET 534
+ +V + DLY + ++ + L+ + NN+L AI S+ + +RFI+ALGI VGE
Sbjct: 488 DRGLVASPADLYTLTYEQVFELEGFAELSTNNLLAAIADSRKPSLARFIFALGIPDVGEE 547
Query: 535 TAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDV 590
TAK LA +LE + KA E L +P +G+ F +R +I+QLRD
Sbjct: 548 TAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDA 603
>gi|355644840|ref|ZP_09053912.1| DNA ligase [Pseudomonas sp. 2_1_26]
gi|354829069|gb|EHF13160.1| DNA ligase [Pseudomonas sp. 2_1_26]
Length = 794
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/596 (40%), Positives = 354/596 (59%), Gaps = 24/596 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ +L+ EL HN YY+ D P I D +YD+L EL+ +E +YP+LLT DS TQ V
Sbjct: 10 RIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLLTPDSPTQRVSGTP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT----------KNIEYIAELKF 126
V H M+SL N F ++D++ F++R+ L +EY E K
Sbjct: 70 ASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEVEYSCEPKL 129
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+AV+L YE G L + +TRGDG+ GE+IT+N+ I +PL L+ + PE+LEVR EV +
Sbjct: 130 DGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEILEVRGEVFM 189
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
K F LN G K F NPRNAAAG LRQL+ KI ++ L F A+G G++ G +P
Sbjct: 190 SKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFGQVSG-TLP 248
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
+ +L ++ G+ I E ++ G ++Y I +R L YEIDGVV+K+N ++
Sbjct: 249 DTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVFKVNRIAF 308
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q++LGF +R PR+A+A+KF ++E LT++ + Q+GRTG +TPVA LKPV + G+T++ A
Sbjct: 309 QRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVAGVTVSNA 368
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKI- 425
TLHN E+ R ++IGDTVV+ R+G+VIP++ +L RP D++ ++P CP+C S +
Sbjct: 369 TLHNMDEVARLGLRIGDTVVIRRAGDVIPQVMQVVLERRPADAQAIEVPEHCPVCGSAVE 428
Query: 426 -----------IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLV 474
I I RC G + C AQ K + HF SR+AM+I GLG K++E+LV
Sbjct: 429 RTQLVKRSKGRESISEGAIYRCVGR-LSCQAQLKQAIIHFVSRRAMDIDGLGDKIVEQLV 487
Query: 475 NANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGET 534
+ +V + DLY + ++ + L+ + NN+L AI S+ + +RFI+ALGI VGE
Sbjct: 488 DRGLVASPADLYTLTYEQVFELEGFAELSTNNLLAAIADSRKPSLARFIFALGIPDVGEE 547
Query: 535 TAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDV 590
TAK LA +LE + KA E L +P +G+ F +R +I+QLRD
Sbjct: 548 TAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDA 603
>gi|257454409|ref|ZP_05619671.1| DNA ligase, NAD-dependent [Enhydrobacter aerosaccus SK60]
gi|257448175|gb|EEV23156.1| DNA ligase, NAD-dependent [Enhydrobacter aerosaccus SK60]
Length = 675
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 264/679 (38%), Positives = 388/679 (57%), Gaps = 46/679 (6%)
Query: 9 INFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSL 68
+N + ++ ++ +L +L +HN AYY+ DNP++ D++YDQL EL +E YP+L+ DS
Sbjct: 3 MNTAAITAQMRKLIAQLKQHNHAYYVLDNPLLEDSEYDQLRQELVALETAYPQLVQSDSP 62
Query: 69 TQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKL-TKNIEYIAELKFD 127
T VG V H M+SL N F+ +D+ F +R+ + L +N EY ELK D
Sbjct: 63 TNQVGDKPLPFFTQVTHQIPMLSLGNLFTFDDLQNFMRRVNDRLADNQQNPEYEVELKLD 122
Query: 128 GIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIY 187
G+AV+L Y+ G QA TRGDG GE+IT N+ I +PL L I P LEVR EVL+
Sbjct: 123 GLAVSLLYQNGQFTQAVTRGDGQTGEDITQNVRTIRNLPLQLAIDIP--RLEVRGEVLMP 180
Query: 188 KKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPS 247
K F KLN+ G K F NPRNAAAG LRQL+P I K++ L F+A+ V + +P+
Sbjct: 181 KAGFAKLNRDAQAKGEKTFANPRNAAAGSLRQLDPNIAKSRPLAFYAYSVNQ----GLPA 236
Query: 248 ---SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCL 304
+ S+ L W + +G SI + ++ +L +Y+ + KR +LP+EIDG V K+N L
Sbjct: 237 EITTQSDALFWLKALGFSIS-DIKIVQTAAQLQAYYQAVIEKRSHLPFEIDGTVIKVNSL 295
Query: 305 STQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITIT 364
+ Q++LGF SR PR+A AYKF ++ +T++ AI Q+GRTG +TPV L+PV + G+T++
Sbjct: 296 ALQEQLGFLSREPRWATAYKFPAETVMTRLNAIEWQVGRTGQLTPVGKLEPVNVGGVTVS 355
Query: 365 RATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSK 424
TLHN EI R +I+ GD V VHR+G+VIPK+T RP ++++ +P CP+C+S
Sbjct: 356 NVTLHNIGEIQRLDIRAGDMVSVHRAGDVIPKVTRVWTDERPANAQVVSLPTHCPVCDSP 415
Query: 425 IIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVD 484
+I E +ARC+G C AQ++ L HF SRKAM+I GLG++ + IV D
Sbjct: 416 VIMPEGEALARCTGGLF-CPAQQQEALIHFVSRKAMDIDGLGERWLINFFEQGIVKNVAD 474
Query: 485 LYKIN--FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY 542
+Y ++ L+ L+++ K N+L AI+KSK TT RFI+ALGI VGE+TA LA
Sbjct: 475 IYALSKHRDALINLEKLGEKSVENMLAAIEKSKDTTLPRFIFALGIGGVGESTAMNLAMQ 534
Query: 543 FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL------- 595
F +L+ + A+ E L P +G T + +F + +I++L GI+W
Sbjct: 535 FGDLQPLMAASIEALQKTPDVGEKTADSIFEFFRAEHNIEVINRLLQAGIHWQPVSQVPE 594
Query: 596 -NNP------------------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAI 630
N P G KV +S T L+ G+K G KL A
Sbjct: 595 GNQPLKGQSWVITGTLESMGRDEAKAKLQALGAKVSGSVSAKTTALLAGEKAGSKLANAE 654
Query: 631 KLNIKILDEKNFVKIVKGF 649
KL +K++ E F ++ +
Sbjct: 655 KLGVKVVTEAQFTDLLNTY 673
>gi|416858275|ref|ZP_11913244.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa 138244]
gi|334839669|gb|EGM18346.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa 138244]
gi|453046883|gb|EME94598.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PA21_ST175]
Length = 794
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/596 (40%), Positives = 354/596 (59%), Gaps = 24/596 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ +L+ EL HN YY+ D P I D +YD+L EL+ +E +YP+LLT DS TQ V
Sbjct: 10 RIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLLTPDSPTQRVSGTP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT----------KNIEYIAELKF 126
V H M+SL N F ++D++ F++R+ L +EY E K
Sbjct: 70 ASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEVEYSCEPKL 129
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+AV+L YE G L + +TRGDG+ GE+IT+N+ I +PL L+ + PE+LEVR EV +
Sbjct: 130 DGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEILEVRGEVFM 189
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
K F LN G K F NPRNAAAG LRQL+ KI ++ L F A+G G++ G +P
Sbjct: 190 SKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFGQVSG-TLP 248
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
+ +L ++ G+ I E ++ G ++Y I +R L YEIDGVV+K+N ++
Sbjct: 249 DTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVFKVNRIAF 308
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q++LGF +R PR+A+A+KF ++E LT++ + Q+GRTG +TPVA LKPV + G+T++ A
Sbjct: 309 QRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVAGVTVSNA 368
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKI- 425
TLHN E+ R ++IGDTVV+ R+G+VIP++ +L RP D++ ++P CP+C S +
Sbjct: 369 TLHNMDEVARLGLRIGDTVVIRRAGDVIPQVMQVVLERRPADAQAIEVPEHCPVCGSAVE 428
Query: 426 -----------IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLV 474
I I RC G + C AQ K + HF SR+AM+I GLG K++E+LV
Sbjct: 429 RTQLVKRSKGKESISEGAIYRCVGR-LSCQAQLKQAIIHFVSRRAMDIDGLGDKIVEQLV 487
Query: 475 NANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGET 534
+ +V + DLY + ++ + L+ + NN+L AI S+ + +RFI+ALGI VGE
Sbjct: 488 DRGLVASPADLYTLTYEQVFELEGFAELSTNNLLTAIADSRKPSLARFIFALGIPDVGEE 547
Query: 535 TAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDV 590
TAK LA +LE + KA E L +P +G+ F +R +I+QLRD
Sbjct: 548 TAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDA 603
>gi|407695607|ref|YP_006820395.1| NAD-dependent DNA ligase LigA [Alcanivorax dieselolei B5]
gi|407252945|gb|AFT70052.1| NAD-dependent DNA ligase LigA [Alcanivorax dieselolei B5]
Length = 804
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 239/639 (37%), Positives = 375/639 (58%), Gaps = 39/639 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +L+ +L+ + YY+ D+P + D +YD+L +L+ +E + P+L++ DS TQ VG V
Sbjct: 12 QIKQLRDQLNDWSYRYYVLDDPAVPDPEYDRLFRQLQVLESERPDLISPDSPTQRVGDVP 71
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F+DE++ F++R+ L ++ +I+Y+AE K DG+AV+L YE
Sbjct: 72 LDGFNEVRHAVPMLSLGNAFNDEELRDFDQRVRERLDVSGSIDYVAEPKLDGLAVSLVYE 131
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L + +TRGDG GE+IT N+ I IPL L PP L+EVR EV++ F +LN+
Sbjct: 132 NGELVRGATRGDGETGEDITANVRTIKSIPLRLRGDKPPALMEVRGEVVMTHHGFAELNR 191
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ K F NPRNAAAG LRQL+ +I + L F+A+ + +L G N P HS +L
Sbjct: 192 RQAEAEQKTFANPRNAAAGSLRQLDSRITAQRPLEFYAYSLAQLEGENWPDRHSAILERL 251
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ GL + E + GV+ L+ FY+ I +R L Y+IDGVVYK++ L Q+ LGF SRA
Sbjct: 252 RQWGLRVNPEVKLCDGVDALLAFYQDILARRDQLDYDIDGVVYKVDRLDWQRDLGFVSRA 311
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T + ++ Q+GRTG +TPVA L+PV + G+T++ ATLHN EI R
Sbjct: 312 PRWAIAHKFPAQEEITVLNEVDWQVGRTGALTPVAKLEPVQVGGVTVSNATLHNLDEIRR 371
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFK----------------------- 413
I+IGD+V+++R+G+VIPK+ + P D ++FK
Sbjct: 372 LGIRIGDSVIIYRAGDVIPKVVGKVQERSPADPQVFKGGESAAIRQVGPFVRIPRECWLS 431
Query: 414 ----------IPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNII 463
P CP+C+S++I + RC+G I C AQ++ ++HF+SR+AM+I
Sbjct: 432 PRYADQRAPQAPRHCPVCDSQVIRKRGEVAYRCTGGLI-CGAQQREAIKHFASRRAMDIE 490
Query: 464 GLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFI 523
GL K ++ LV+ +V DLY++ +++ L+R+ K A N++ A+ S+ + RF+
Sbjct: 491 GLSIKRVDLLVDQGLVSNVADLYRLKAEDIADLERMGEKSAANLIEALAHSRTVSLERFL 550
Query: 524 YALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLL 583
+ALGI +GE TAK LA+ F +LE + +A L +P +G KA F + + +
Sbjct: 551 FALGILQIGEETAKALADCFGDLETIRRAPLLLFLAVPDVGLEVAKAIHAFFREQHNEDV 610
Query: 584 ISQLRDVGIYWLNNPNTKGGKVVNFISKNT-NYLVKGQK 621
I L G+ P G F+ + T Y +K K
Sbjct: 611 IDGLLAEGV----QPRANGHPSAAFVRELTLGYFLKAAK 645
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 648
G KV +SK T+ +V G+ G KL A KL ++++DE FV + G
Sbjct: 753 GAKVAGSVSKKTHCVVAGEAAGSKLSDAEKLEVEVMDEDTFVDFLAG 799
>gi|260773253|ref|ZP_05882169.1| DNA ligase [Vibrio metschnikovii CIP 69.14]
gi|260612392|gb|EEX37595.1| DNA ligase [Vibrio metschnikovii CIP 69.14]
Length = 591
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 239/591 (40%), Positives = 354/591 (59%), Gaps = 34/591 (5%)
Query: 89 MMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGD 148
M+SLDN F+D ++ F +RI + T++ + E K DG+AV+L Y G L QA+TRGD
Sbjct: 1 MLSLDNAFADSELDSFFRRIGERVAATQHARFCCEPKLDGLAVSLLYIDGRLTQAATRGD 60
Query: 149 GNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTN 208
G GENIT N+ I IPL L+ P +EVR EV + K+ F ++N G K F N
Sbjct: 61 GTTGENITENVRTIKSIPLKLSGTGWPSRIEVRGEVFMPKEGFERMNAQALKKGQKVFVN 120
Query: 209 PRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYS 268
PRNAAAG LRQL+ +I + L F+A+ VG + G + +SH + + GL + E
Sbjct: 121 PRNAAAGSLRQLDSRITAKRPLAFYAYSVGVVEGAELSTSHYDRFLQLKSWGLPVSPETQ 180
Query: 269 VLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSK 328
+ ++ ++Y+ I KR +LPYEIDGVV K++ ++ Q+KLGF +RAPR+A+AYKF ++
Sbjct: 181 RVENAQQVKDYYQTIMAKRADLPYEIDGVVIKVDDIALQEKLGFVARAPRWAIAYKFPAQ 240
Query: 329 EALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVH 388
E +T++ + Q+GRTG ITPVA L+P+ + G+T++ ATLHN EI R + +GDTV++
Sbjct: 241 EEMTRLNEVEFQVGRTGAITPVAKLEPIFVGGVTVSNATLHNADEIERLGVMVGDTVIIR 300
Query: 389 RSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRK 448
R+G+VIP+I S +L RP +++ P+ CP+C S + +E +ARC+G + C AQRK
Sbjct: 301 RAGDVIPQIVSVVLERRPQEAQPIIFPSHCPVCQSDVERVEGEAVARCTGGLV-CQAQRK 359
Query: 449 AGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNIL 508
L+HF SRKAM++ GLG K+IE+LV +V T DL+K+ L LDR+ K A NI
Sbjct: 360 EALKHFVSRKAMDVDGLGDKVIEQLVEREMVETPADLFKLRAGELTVLDRMGPKSAQNIT 419
Query: 509 LAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTV 568
A+ +K TT +RF+YALGIR VGE TA LA +F LE + +A+ EQL+ + +G
Sbjct: 420 QALINAKRTTLARFLYALGIREVGEATAMNLAQHFCTLEAISQASIEQLIGVQDVGMIVA 479
Query: 569 KAFIKFINQPLHRLLISQLRDVGIYW---------------------------LNNPNTK 601
F +Q ++ ++ +LRD+G+ W L+ K
Sbjct: 480 SHVHAFFSQEKNQRVVQELRDLGVTWPDIEPQDVAKPQPLAGKTVVLTGSLVQLSRTEAK 539
Query: 602 ------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
G KV +SKNT+ L G+ G KL KA +L I+I E++ + ++
Sbjct: 540 AALQSLGAKVTGSVSKNTDMLFAGEAAGSKLVKAQELGIEIFSEQDLLDLL 590
>gi|319787332|ref|YP_004146807.1| DNA ligase, NAD-dependent [Pseudoxanthomonas suwonensis 11-1]
gi|317465844|gb|ADV27576.1| DNA ligase, NAD-dependent [Pseudoxanthomonas suwonensis 11-1]
Length = 788
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 234/599 (39%), Positives = 357/599 (59%), Gaps = 24/599 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R EL++ + N Y+ D P I+D +YD L+ EL+ +E ++PEL +DS T+ VG
Sbjct: 10 RAAELRRRIEDANRRYHELDAPDITDAQYDALVRELEALEREHPELAAEDSPTRRVGATP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVNLRY 135
V H M+SL N F+DE+V F +RI L + ++ + AE K DG+A++LRY
Sbjct: 70 SGRFAAVTHAVPMLSLGNAFTDEEVADFVRRIRQRLEREDGDLAFSAEPKLDGLAISLRY 129
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
E G Q +TRGDG GE++T N+ I IP L K P +LEVR EV + + DF + N
Sbjct: 130 EDGVFVQGATRGDGATGEDVTANLRTIGDIPHQLAGKGWPRVLEVRGEVYMGRADFERWN 189
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
++ G K NPRN AAG LRQ +PKI + L FFA+GVG + G +P SHS L
Sbjct: 190 EHARLHGGKVLANPRNGAAGSLRQQDPKITAQRPLSFFAYGVGLVEGGELPPSHSATLRQ 249
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ G + V+ G++ L+ +Y+ I R LP++IDGVVYK++ Q+++GF SR
Sbjct: 250 LRDWGFPVSDLVQVVRGLDGLLGYYRHIGEARDGLPFDIDGVVYKLDDQEGQREMGFVSR 309
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A+A+KF ++E T ++++ + +GRTG +TP AL++PVL+ G+T+TRATLHN +
Sbjct: 310 APRWAIAHKFPAQEQTTVVESVEVSVGRTGAVTPWALMQPVLVGGVTVTRATLHNADHVA 369
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
R +++ GDTV+V R+G+VIP++ ++ RP D++ + +P CP C S+++ E + R
Sbjct: 370 RLDVRNGDTVIVRRAGDVIPEVVQVVIDQRPPDARPWSMPATCPACGSEVVREEGAAVWR 429
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
CSG + C AQ + HF+SR+AM+I GLG++ IE L + DLY++ +LL
Sbjct: 430 CSGE-LSCPAQLVQSVFHFASRRAMDIDGLGERYIESLAEFGYLRDVSDLYRLTLDDLLE 488
Query: 496 LDR----------------------VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGE 533
+ R V+ + A+N+L AI S+ TT +RF+YALGI+HVGE
Sbjct: 489 MKRRADEREGTTPVAPAKSGVKSGKVATRWADNLLAAIDTSRNTTLARFLYALGIQHVGE 548
Query: 534 TTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI 592
+TAK LA + +LE + +P IG +A F +QP ++ +I +L + G+
Sbjct: 549 STAKALAQWLGDLELIRHLPWPLFRRLPDIGGEVARALGHFFDQPGNQAVIDRLLERGV 607
>gi|352085801|ref|ZP_08953392.1| DNA ligase, NAD-dependent [Rhodanobacter sp. 2APBS1]
gi|351681742|gb|EHA64866.1| DNA ligase, NAD-dependent [Rhodanobacter sp. 2APBS1]
Length = 808
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 237/610 (38%), Positives = 356/610 (58%), Gaps = 40/610 (6%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+ ++ + N Y++ D+P I+D +YD+L+ EL+ +E ++P L + DS T+ VG
Sbjct: 17 LRAQIEQANYRYHVLDDPEITDAEYDRLMRELEALEAEHPALASPDSPTRKVGARAQGGF 76
Query: 81 KYVHHTFKMMSLDNGFSDE---------DVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
V H M+SL N F + +V F +RI LK + + + E K DG+A+
Sbjct: 77 AEVRHAIPMLSLGNAFEQDGESDRERFREVAEFERRIEQTLKRREPV-FSVEPKLDGLAI 135
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVL-NIKYP-----------PELLE 179
+LRYE+G Q +TRGDG GE++T N+ + IPL L N K P++LE
Sbjct: 136 SLRYEHGVFVQGATRGDGETGEDVTANLRTVRAIPLRLRNGKNQDESLRLRSTGWPDVLE 195
Query: 180 VRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGE 239
VR EV++ KDF N Y G K NPRN AAG LRQL+P + + L FFA+ +G
Sbjct: 196 VRGEVIMLHKDFEAFNAYARKHGEKPLANPRNGAAGSLRQLDPAVTAKRRLSFFAYAIGA 255
Query: 240 LRGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVY 299
+ G +P +HS L ++ G + E G + LI +Y++I KR +LPY+IDGVVY
Sbjct: 256 VEGGELPPTHSATLRQLREWGFPVSPEVDTARGFDGLIAYYRRIGAKRDSLPYDIDGVVY 315
Query: 300 KINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLID 359
K++ + Q+++GF SRAPR+A+A+KF ++E +T ++AI IQIGRTG TPVA L PV +
Sbjct: 316 KLDDYAGQREMGFVSRAPRWAIAHKFPAQEQITTVEAIEIQIGRTGAATPVARLAPVQVA 375
Query: 360 GITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICP 419
G+T+T ATLHN ++ R ++++GDTV+V R+G+VIP++ + LRP ++ + +P CP
Sbjct: 376 GVTVTNATLHNADQVARLDVRVGDTVIVRRAGDVIPEVVRVMPELRPPHTRPWHMPAHCP 435
Query: 420 ICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIV 479
+C S+++ E RCSG I C AQRK L HF+SR+AM+I GLG++ E LV +IV
Sbjct: 436 VCGSELLREEGAAAWRCSGGLI-CAAQRKEALIHFASRRAMDIEGLGERFAEALVELDIV 494
Query: 480 VTAVDLYKINFKNLLRLDR-----------------VSNKLANNILLAIQKSKLTTFSRF 522
+ DLY + + + + R V+ K A N++ I+ SK TT +RF
Sbjct: 495 HSPADLYGLGVDDFVEMKRRIDERDGTTPETVKAGKVATKWAENLVAGIEASKRTTLARF 554
Query: 523 IYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRL 582
++ALGI H+GE+TAK LA + LE + L +P IGS + F Q +
Sbjct: 555 LFALGIMHIGESTAKTLAAWLGRLEFVRSTPAAVLRVLPDIGSEVATSIAGFFAQAGNEQ 614
Query: 583 LISQLRDVGI 592
++ L + GI
Sbjct: 615 VVDALLEAGI 624
>gi|339008258|ref|ZP_08640832.1| DNA ligase [Brevibacillus laterosporus LMG 15441]
gi|338775461|gb|EGP34990.1| DNA ligase [Brevibacillus laterosporus LMG 15441]
Length = 668
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 247/666 (37%), Positives = 396/666 (59%), Gaps = 43/666 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++ +LKK + + YY DNP I+D +YDQ++ EL+ +E+++P+++T DS TQ VG +
Sbjct: 9 QIAKLKKRIEEESRHYYTEDNPQITDQEYDQMMRELQDLEDQWPDMVTPDSPTQRVGGMP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H M+SL N F ++D+ F++R+ L + + Y+ ELK DG+AV+LRYE
Sbjct: 69 LPFFEKVVHKTPMLSLGNAFDEDDLRDFDRRVRQGLG-NQTVRYVCELKIDGLAVSLRYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G + +TRGDG GE+IT N+ I IPL L P +EVR E + K F +LNK
Sbjct: 128 NGLFVKGATRGDGTTGEDITQNLKTIRSIPLRLP---EPITMEVRGEAFMSKIAFDRLNK 184
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R F NPRN+AAG LRQL+PKI ++ L F + +GE+ G + SHSE L +
Sbjct: 185 ERAEREEALFANPRNSAAGSLRQLDPKIAASRSLSTFIYQIGEVEGRQI-DSHSEGLTFL 243
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+++G S+ E + ++I+F + +KR L YEIDG+V K++ + Q++LGFT+++
Sbjct: 244 ERLGFSVNQERRTFDDIEEVIKFVQSWTLKRPELSYEIDGMVIKVDSFAQQQELGFTAKS 303
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++EA+T++K I + +GRTG++TP ALL+PV++ G + RA+LHNE I +
Sbjct: 304 PRWAIAYKFPAEEAVTQLKDIEVSVGRTGVVTPTALLQPVILAGTEVKRASLHNEDIIMK 363
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K + +GD V+V ++G++IP+I + R + + F +P CP C S+++ + + RC
Sbjct: 364 KGLLLGDYVLVKKAGDIIPEIVEVLKGRRTGEERPFMMPTHCPECASELVRLPDEVALRC 423
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK--NLL 494
EC A + G+ HF SR+AMN+ GLG+K++ L A ++ + DLY + K LL
Sbjct: 424 INP--ECPAVIREGMSHFVSRQAMNLDGLGEKVVASLFAAGLITSVADLYYLQDKREQLL 481
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
+L+R+ K + +L AI+ SK + R ++ LGIR VG AK LA F +++ + +AT
Sbjct: 482 QLERMGEKSVDKMLQAIEASKENSVERLLFGLGIRLVGAKAAKVLAEQFGDIDHIMQATA 541
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW-------------------- 594
E+L+ I +IG ++ + + + P + LI +L++ G+
Sbjct: 542 EELIAIDEIGPKMAESILTYFSMPQVQELIEKLKNAGVNMKYKGVRVQAGEDLPFSGKTV 601
Query: 595 -LNNPNTK-------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEK 640
L T+ GGKV +SK T+ ++ G+K G KLEKA KL I +LDE+
Sbjct: 602 VLTGTLTQLTRQEAEEKIAMLGGKVTGSVSKKTDLVIAGEKAGSKLEKAEKLGITVLDEE 661
Query: 641 NFVKIV 646
F+ ++
Sbjct: 662 AFLALL 667
>gi|295697355|ref|YP_003590593.1| NAD-dependent DNA ligase [Kyrpidia tusciae DSM 2912]
gi|295412957|gb|ADG07449.1| DNA ligase, NAD-dependent [Kyrpidia tusciae DSM 2912]
Length = 677
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 241/679 (35%), Positives = 394/679 (58%), Gaps = 57/679 (8%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL+ + R++ YY+ D+P++ D +YD+ + EL ++E ++PEL+T DS TQ V
Sbjct: 10 RIEELRALIRRYDYHYYVLDDPLVDDAEYDRCMRELVELEARHPELVTPDSPTQRVSGAP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E V H M+SL N FS+ DV F++R+ L +++EY+ ELK DG+A++LRYE
Sbjct: 70 SEAFAKVIHREPMLSLANAFSEGDVREFDRRVRAALP-GEDVEYVCELKIDGLAISLRYE 128
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELL--EVRCEVLIYKKDFIKL 194
G Q +TRGDG +GE+IT N+ I +PL L PE + EVR E + KK F+++
Sbjct: 129 NGEFVQGATRGDGELGEDITRNLRTIRVLPLRL-----PERVSVEVRGEAYMPKKVFLRV 183
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGV-----GELRGMNMP-SS 248
N+ R G + F NPRNAAAG LRQL+P++ + L + + G + G P +
Sbjct: 184 NRERDEAGEQAFANPRNAAAGSLRQLDPRVTARRGLSLWMYAAVLGPDGTVPGGPGPFRT 243
Query: 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQK 308
H E+L W +G + V + ++ +F + + R LPY+IDG+V K+N L Q
Sbjct: 244 HEEILKWLDTLGFPVNPHRRVCRNLEEVFQFLNEGDRLRNTLPYDIDGMVIKVNNLDQQN 303
Query: 309 KLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATL 368
+LG T+++PR+A+AYKF ++A T++ I + +GRTG++TP A+ +PV + G T++RA+L
Sbjct: 304 RLGATAKSPRWAMAYKFAPEQAETRLLTIEVSVGRTGVVTPTAVFEPVFLAGTTVSRASL 363
Query: 369 HNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYI 428
HNE I ++I+IGD VVV ++G +IP++ LR + IF +P CP C S ++ +
Sbjct: 364 HNEDLIRERDIRIGDIVVVEKAGEIIPEVVRVRADLRTGEEHIFSMPKDCPACGSPLVRL 423
Query: 429 ESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488
E + RC +C AQ + G+ HF+SR AMNI GLG+ ++ +L ++ + DLY++
Sbjct: 424 EEEVALRCVNP--DCPAQIQEGIIHFASRDAMNIEGLGEALVAQLYREGLIHSVADLYEL 481
Query: 489 NFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLEC 548
+ L+ L+R+ K A+N+L AI++SK + R ++ LGIR++GE ++ LA +FK ++
Sbjct: 482 KREQLVPLERMGAKSADNLLQAIERSKQNSLERLLFGLGIRYIGEKASRVLAAHFKEMDA 541
Query: 549 MFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI---------------- 592
+ +A+ E+LL +P IG+ ++ + Q R LI +LR G+
Sbjct: 542 LMEASSEELLKVPDIGAKMAQSIRVYFGQESARRLIERLRAHGVNMVYRGAEAAPVPSRL 601
Query: 593 --------------------YWLNNPNTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKL 632
W+ GGK +S+ T+ ++ G+ PG KL KA +L
Sbjct: 602 AGKTVVLTGTLHAMGRREAQDWVRR---LGGKPTESVSRKTDIVIAGEDPGSKLVKARQL 658
Query: 633 NIKILDEKNFVKIVK--GF 649
+++++E F+ I++ GF
Sbjct: 659 GVEVINEDQFLSILREAGF 677
>gi|261380488|ref|ZP_05985061.1| DNA ligase, NAD-dependent [Neisseria subflava NJ9703]
gi|284796739|gb|EFC52086.1| DNA ligase, NAD-dependent [Neisseria subflava NJ9703]
Length = 822
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 257/648 (39%), Positives = 367/648 (56%), Gaps = 74/648 (11%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ L L+R+ YY D P + D +YD+L EL+ +E +PEL DS TQ VG
Sbjct: 7 RIKYLTDLLNRYAYEYYTLDAPSVPDAEYDKLFRELEALELNHPELKLPDSPTQRVGGEP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDED---------VIIFNKRITNELKLTKNIEYIAELKFD 127
V H M+SL N FS +D + F++R+ L K EY+ E KFD
Sbjct: 67 LAGFDEVRHEVPMLSLTNAFSPQDENGVFDHAEMYAFDERVRGGLNGEKP-EYVIEPKFD 125
Query: 128 GIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIY 187
G+A++L Y G L QA+TRGDG GE++T N+ + IPL L + PEL+E+R EVL+
Sbjct: 126 GLAISLLYRDGVLTQAATRGDGTTGEDVTQNVKTVSNIPLRLYGENIPELIEIRGEVLML 185
Query: 188 KKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPS 247
K DF LN + G K F NPRNAAAG LRQL+ +I + LHFF + + +G +
Sbjct: 186 KADFAALNARQAENGQKPFANPRNAAAGSLRQLDSRITAQRKLHFFPYSIARQQGGFIAE 245
Query: 248 SHSELLNWYQKIGLSIC-GEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
H + L + +++G S+ G + +N+++ FY+++ KR LPYEIDG+V K+N L+
Sbjct: 246 EHLQELGYCKELGFSLPDGNFGCFPNINEVLAFYEQMQQKRPTLPYEIDGMVVKVNSLAQ 305
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q++LGF SRAPR+A+A+KF ++EALT ++AI++QIGRTG +TPVA L+PV + G+T+T A
Sbjct: 306 QRELGFISRAPRWAIAHKFPAEEALTIVEAIDVQIGRTGAVTPVARLQPVFVGGVTVTNA 365
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDS----------------- 409
TLHN+ E+ RK++++GDTVVV R+G+VIP++ I RP
Sbjct: 366 TLHNQDEVSRKDVRVGDTVVVRRAGDVIPEVVRVIFERRPMQESNISVSDGLQDDLFAET 425
Query: 410 ----------KIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKA 459
K +++P CPIC+S+I E +ARCSG + C AQR GL HF+SRKA
Sbjct: 426 PSETRAEPLHKPYRLPTHCPICHSEIEREEGEAVARCSGGML-CQAQRAQGLIHFASRKA 484
Query: 460 MNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL----DRVS--------------- 500
M+I GLG+K IE+LV ++V DLY+++ L ++ D+ S
Sbjct: 485 MDIDGLGQKQIEQLVTQDLVRHFADLYRLDIPTLQKMKETADKASVNEEEPSNSEIEDFE 544
Query: 501 ----------------NKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFK 544
K A NIL I+ SK +RF++ALGIRHVGE TAK LA F
Sbjct: 545 NESGNALLSKTSKKQPTKWAENILAGIEASKTPELARFLFALGIRHVGERTAKTLAQAFG 604
Query: 545 NLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI 592
L + A E L +P IG+ + F Q + +I +L VG+
Sbjct: 605 TLGNVRHAPEPILACLPDIGTVVAHSIAHFFAQEAQQAMIDELLAVGV 652
Score = 38.9 bits (89), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
GGKV +SK T+Y+V G+ G KLEKA L + +
Sbjct: 777 GGKVSGSVSKKTDYVVAGEAAGSKLEKAQTLGVAV 811
>gi|389796632|ref|ZP_10199683.1| NAD-dependent DNA ligase LigA [Rhodanobacter sp. 116-2]
gi|388448157|gb|EIM04142.1| NAD-dependent DNA ligase LigA [Rhodanobacter sp. 116-2]
Length = 808
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 236/610 (38%), Positives = 356/610 (58%), Gaps = 40/610 (6%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L+ ++ + N Y++ D+P I+D +YD+L+ EL+ +E ++P L + DS T+ VG
Sbjct: 17 LRAQIEQANYRYHVLDDPEITDAEYDRLMRELEALEAEHPALASPDSPTRKVGARAQGGF 76
Query: 81 KYVHHTFKMMSLDNGFSDE---------DVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
V H M+SL N F + +V F +RI LK + + + E K DG+A+
Sbjct: 77 AEVRHAIPMLSLGNAFEQDGESDRERFREVAEFERRIEQTLKRREPV-FSVEPKLDGLAI 135
Query: 132 NLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVL-NIKYP-----------PELLE 179
+LRYE+G Q +TRGDG GE++T N+ + IPL L N K P++LE
Sbjct: 136 SLRYEHGVFVQGATRGDGETGEDVTANLRTVRAIPLRLRNGKNQDESLRLRSTGWPDVLE 195
Query: 180 VRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGE 239
VR EV++ KDF N Y G K NPRN AAG LRQL+P + + L FFA+ +G
Sbjct: 196 VRGEVIMLHKDFEAFNAYARKHGEKPLANPRNGAAGSLRQLDPAVTAKRRLSFFAYAIGA 255
Query: 240 LRGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVY 299
+ G +P +HS L ++ G + E G + LI +Y++I KR +LPY+IDGVVY
Sbjct: 256 VEGGELPPTHSATLRQLREWGFPVSPEVDTARGFDGLIAYYRRIGAKRDSLPYDIDGVVY 315
Query: 300 KINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLID 359
K++ + Q+++GF SRAPR+A+A+KF ++E +T ++AI IQIGRTG TPVA L PV +
Sbjct: 316 KLDDYAGQREMGFVSRAPRWAIAHKFPAQEQITTVEAIEIQIGRTGAATPVARLAPVQVA 375
Query: 360 GITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICP 419
G+T+T ATLHN ++ R ++++GDTV+V R+G+VIP++ + LRP ++ + +P CP
Sbjct: 376 GVTVTNATLHNADQVARLDVRVGDTVIVRRAGDVIPEVVRVMPELRPPHTRPWHMPAHCP 435
Query: 420 ICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIV 479
+C S+++ E RCSG I C AQRK L HF+SR+AM+I GLG++ E LV +IV
Sbjct: 436 VCGSELLREEGAAAWRCSGGLI-CAAQRKEALIHFASRRAMDIEGLGERFAEALVELDIV 494
Query: 480 VTAVDLYKINFKNLLRLDR-----------------VSNKLANNILLAIQKSKLTTFSRF 522
+ DLY + + + + R V+ K A N++ I+ S+ TT +RF
Sbjct: 495 HSPADLYGLGVDDFVEMKRRIDERDGTTPETVKAGKVATKWAENLVAGIEASRHTTLARF 554
Query: 523 IYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRL 582
++ALGI H+GE+TAK LA + LE + L +P IGS + F Q +
Sbjct: 555 LFALGIMHIGESTAKTLAAWLGRLEFVRSTPAAVLRVLPDIGSEVASSIAGFFAQAGNEQ 614
Query: 583 LISQLRDVGI 592
++ L + GI
Sbjct: 615 VVDALLEAGI 624
>gi|340356372|ref|ZP_08679021.1| NAD-dependent DNA ligase LigA [Sporosarcina newyorkensis 2681]
gi|339621465|gb|EGQ26023.1| NAD-dependent DNA ligase LigA [Sporosarcina newyorkensis 2681]
Length = 689
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 257/667 (38%), Positives = 395/667 (59%), Gaps = 45/667 (6%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
+L RV EL K LH + AYY D PI+ D++YD + EL IEE++P+L+ DS TQ V
Sbjct: 20 ELERRVAELNKILHEYGHAYYDLDAPIVPDSEYDAKMQELLAIEEEHPDLIYPDSPTQRV 79
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVN 132
G E V H + M+SL N F++ D+ F++R+ + ++ Y+ ELK DG+AV+
Sbjct: 80 GGTPLEVFSKVVHRYPMLSLANAFNEADLRDFDRRVQ---EAAGSVVYVCELKIDGLAVS 136
Query: 133 LRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFI 192
L+YE G L Q STRGDG +GE+IT N+ I +PL L P +EVR E + K+ F
Sbjct: 137 LQYENGRLVQGSTRGDGTVGEDITANLRTIRSVPLQLQ---QPLTIEVRGEAYMPKRSFA 193
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG-ELRGMNMPSSHSE 251
KLN+ R G F NPRNAAAG LRQL+PKI ++ L F + VG + N+ SHS+
Sbjct: 194 KLNEDRDEAGEVPFANPRNAAAGSLRQLDPKIAASRNLATFIYAVGGDAEAYNL-DSHSD 252
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
L+ ++GL+ E + +++++++ R L YEIDG+V K++ Q++LG
Sbjct: 253 ALDKLDQLGLTTNEERKRCATIDEVLDYVAYWTEHRQALDYEIDGIVIKVDNFEAQEQLG 312
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
+T+++PR+A+AYKF ++E TK+ I + +GRTG++TP A+L+PV + G T+ RA+LHNE
Sbjct: 313 YTAKSPRWAIAYKFPAEEVRTKLIDIELSVGRTGVVTPTAILEPVRVAGTTVGRASLHNE 372
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
I K+I+IGD VV+ ++G++IP+I +I R + + F +P+ CPIC+S+++ IE
Sbjct: 373 DLIREKDIRIGDQVVLRKAGDIIPEIVLAIKDQRTGEEEPFHMPSNCPICSSELVRIEGE 432
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ RC +C AQ K L HF SRKAMNI G+G+K++E+L AN+V DLY + +
Sbjct: 433 VALRCMNP--KCPAQMKEALIHFVSRKAMNIEGVGEKLVEQLYAANLVQDVSDLYTLTKE 490
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+L L+R+ +K A NI AI++SK + + ++ LGIRHVGE A+ LA ++ L+ + K
Sbjct: 491 SLCTLERIGDKSATNISNAIEQSKANSLEKLLFGLGIRHVGEKVARILAEEYRTLDALEK 550
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK---------- 601
AT EQL NI +IG A + + + + ++++LR G+ + T+
Sbjct: 551 ATAEQLTNIFEIGDIVADAVVTYFSTDEVQEVMNKLRAYGVNTVYKGVTREELPTTGPFA 610
Query: 602 -------------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKI 636
GG V +SK T+ ++ G+ G KL KA +L I+I
Sbjct: 611 GKTVVLTGKLTGLTRGEAKEQIEALGGTVSGSVSKKTDLVIAGEDAGSKLTKAKELEIEI 670
Query: 637 LDEKNFV 643
DE+ +
Sbjct: 671 WDEQAML 677
>gi|296390104|ref|ZP_06879579.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa PAb1]
gi|416878758|ref|ZP_11920523.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa 152504]
gi|334838031|gb|EGM16767.1| NAD-dependent DNA ligase LigA [Pseudomonas aeruginosa 152504]
Length = 794
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 239/596 (40%), Positives = 354/596 (59%), Gaps = 24/596 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ +L+ EL HN YY+ D P I D +YD+L EL+ +E +YP+LLT DS TQ V
Sbjct: 10 RIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALETEYPQLLTPDSPTQRVSGTP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT----------KNIEYIAELKF 126
V H M+SL N F ++D++ F++R+ L +EY E K
Sbjct: 70 ASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEVEYSCEPKL 129
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+AV+L YE G L + +TRGDG+ GE+IT+N+ I +PL L+ + P++LEVR EV +
Sbjct: 130 DGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPDILEVRGEVFM 189
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
K F LN G K F NPRNAAAG LRQL+ KI ++ L F A+G G++ G +P
Sbjct: 190 SKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFGQVSG-TLP 248
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
+ +L ++ G+ I E ++ G ++Y I +R L YEIDGVV+K+N ++
Sbjct: 249 DTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVFKVNRIAF 308
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q++LGF +R PR+A+A+KF ++E LT++ + Q+GRTG +TPVA LKPV + G+T++ A
Sbjct: 309 QRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVAGVTVSNA 368
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKI- 425
TLHN E+ R ++IGDTVV+ R+G+VIP++ +L RP D++ ++P CP+C S +
Sbjct: 369 TLHNMDEVARLGLRIGDTVVIRRAGDVIPQVMQVVLERRPADAQAIEVPEHCPVCGSAVE 428
Query: 426 -----------IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLV 474
I I RC G + C AQ K + HF SR+AM+I GLG K++E+LV
Sbjct: 429 RTQLVKRSKGKESISEGAIYRCVGR-LSCQAQLKQAIIHFVSRRAMDIDGLGDKIVEQLV 487
Query: 475 NANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGET 534
+ +V + DLY + ++ + L+ + NN+L AI S+ + +RFI+ALGI VGE
Sbjct: 488 DRGLVASPADLYTLTYEQVFELEGFAELSTNNLLAAIADSRKPSLARFIFALGIPDVGEE 547
Query: 535 TAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDV 590
TAK LA +LE + KA E L +P +G+ F +R +I+QLRD
Sbjct: 548 TAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDA 603
>gi|410459787|ref|ZP_11313494.1| NAD-dependent DNA ligase LigA [Bacillus azotoformans LMG 9581]
gi|409929148|gb|EKN66236.1| NAD-dependent DNA ligase LigA [Bacillus azotoformans LMG 9581]
Length = 668
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 252/669 (37%), Positives = 398/669 (59%), Gaps = 48/669 (7%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ ELK L++++ YY D P + D +YD+L+ EL +EEKYPEL+T DS TQ VG
Sbjct: 9 RIGELKDLLNQYSYEYYTLDKPTVPDAEYDKLMQELLGLEEKYPELVTADSPTQRVGGEP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SL N F++ D+ F++R+ ++ + + Y+ ELK DG+A++LRYE
Sbjct: 69 LSSFEKVEHRVPMLSLGNAFNEGDLRDFDRRVRQDI--GEQVSYVCELKIDGLAISLRYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVL--NIKYPPELLEVRCEVLIYKKDFIKL 194
G Q +TRGDG IGE+IT N+ I IPL L NI +EVR E + K+ F L
Sbjct: 127 DGLFVQGATRGDGYIGEDITMNLRTIKSIPLRLKENID-----IEVRGEAFMPKRSFEAL 181
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N+ R G + F NPRNAAAG LRQL+PKI + L F +G+G + + SHS+ L+
Sbjct: 182 NQEREENGEELFANPRNAAAGSLRQLDPKIAAKRNLDIFLYGIGSTEELPI-DSHSDGLD 240
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
+ +++G E + ++++I+F + KR NLPYEIDG+V K++ Q++LG T+
Sbjct: 241 FLERLGFKTNPERRRCANMDEVIQFIEGWMEKRPNLPYEIDGIVVKVDSFEQQEQLGTTA 300
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
++PR+A+AYKF ++E +TK+ I + +GRTG++TP A+L+PV + G T+ RA+LHNE I
Sbjct: 301 KSPRWAVAYKFPAEEVMTKLIDIELSVGRTGVVTPTAILEPVRVAGTTVKRASLHNEDLI 360
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
K+I+IGD V++ ++G++IP++ S + R D F +P CP C S+++ +E +
Sbjct: 361 REKDIKIGDYVIIKKAGDIIPEVVSVVEEKRTGDELDFMMPTGCPECGSELVRLEDEVAL 420
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC +C AQ + GL HF SR AMNI GLG+K+I +L AN++ D+Y+++ LL
Sbjct: 421 RCINP--KCHAQIREGLIHFVSRNAMNIEGLGEKVITQLFAANLIEDVADIYRLDRDELL 478
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
+L+R+ K +N+L AI+ SK + + ++ LGIRHVG AK LA F+ ++ + KAT
Sbjct: 479 KLERMGEKSVDNLLNAIEASKSNSLEKLLFGLGIRHVGAKAAKTLAQAFETIDALQKATM 538
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLR--DVGIYW------------------ 594
E L+NI +IG + + + + LI +L+ DV + +
Sbjct: 539 EDLININEIGEKMADSVVTYFEKNEVSQLIDELKSYDVNMVYKGPKIVNVEEINSIFAGK 598
Query: 595 ----------LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILD 638
+ + K G KV +SK T+ ++ G+ G KL+KA++L +++ D
Sbjct: 599 TIVLTGKLEQMGRNDAKKELEALGAKVTGSVSKKTDIVIAGEDAGSKLDKALELGLEVWD 658
Query: 639 EKNFVKIVK 647
E ++ +K
Sbjct: 659 EARMLQELK 667
>gi|407795892|ref|ZP_11142849.1| NAD-dependent DNA ligase LigA [Salimicrobium sp. MJ3]
gi|407019712|gb|EKE32427.1| NAD-dependent DNA ligase LigA [Salimicrobium sp. MJ3]
Length = 669
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 247/666 (37%), Positives = 397/666 (59%), Gaps = 43/666 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R +LKK L +++ YY+ D P + D +YD+ L E+ +IEE+YPEL+T DS TQ VG
Sbjct: 9 RHEQLKKLLEKYSHEYYVLDAPTVPDAEYDKKLREITEIEEEYPELITSDSPTQRVGAEP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
++ + V H M+SL N F+++++ F++R+ + + Y+ ELK DG+AV+L YE
Sbjct: 69 LDSFRKVRHEIPMLSLGNAFNEQELRDFDRRVREGAE--GEVSYVCELKIDGLAVSLLYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L + +TRGDG +GE+IT+N+ I IPL L+ PE +EVR E + KK F LN+
Sbjct: 127 EGVLVRGATRGDGTVGEDITSNLRTIRSIPLRLS---HPETIEVRGEAYMPKKSFSALNE 183
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ F NPRNAAAG LRQL+PKI ++ L F +GVG + ++ +HS L +
Sbjct: 184 EKEEKEEAPFANPRNAAAGSLRQLDPKIAASRNLDIFLYGVG-MWEDDLKDTHSARLEYL 242
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+++GL E+ L + ++I++ K R +L YEIDG+V K++ L Q+ LGFT+++
Sbjct: 243 EELGLKTNPEWRALKDIEEVIDYVKSWVDNRNSLDYEIDGIVIKVDQLDEQETLGFTAKS 302
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A AYKF ++E +T++K I++ +GRTG++TP ALL+PV + G T+ RA+LHNE I
Sbjct: 303 PRWATAYKFPAEEVVTRMKDIHLTVGRTGVVTPTALLEPVRVAGTTVQRASLHNEDLIKE 362
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++I+IGDTVV+ ++G++IP++ I R + + F +P CP C S ++ +E + RC
Sbjct: 363 RDIRIGDTVVIKKAGDIIPEVLRVIEEERTGNEEPFTMPKTCPECGSDLVRLEEEVALRC 422
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
C AQ + L HF SR AM+I GLG+K+I +L ++ D+YK+ + LL+L
Sbjct: 423 INP--NCPAQLREALIHFVSRNAMDIEGLGEKVITQLFREELIHNIADIYKLRKEELLQL 480
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
DR++ K NN+L AI++SK + + ++ LG+R+VG A L+N+F +++ + KA+ E+
Sbjct: 481 DRMAEKSVNNLLTAIEQSKENSMEKLLFGLGVRYVGTKAATTLSNHFGSMQALQKASSEE 540
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVG------------------------- 591
L +IP+IG ++ + + R+L+ +L ++G
Sbjct: 541 LESIPEIGEKMAESIHSYFQREEVRVLLRELSELGLNMEYKGRRVSAEAATSPFNGKTVV 600
Query: 592 ------IYWLNNPNTK----GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
IY + + G KV +SKNT+ LV G+ G K KA +L ++I E
Sbjct: 601 LTGKMEIYSRSEAKKRVEELGAKVTGSVSKNTDLLVAGEDAGSKYTKAEELGVEIWSESQ 660
Query: 642 FVKIVK 647
F + ++
Sbjct: 661 FAEALQ 666
>gi|392424581|ref|YP_006465575.1| DNA ligase, NAD-dependent [Desulfosporosinus acidiphilus SJ4]
gi|391354544|gb|AFM40243.1| DNA ligase, NAD-dependent [Desulfosporosinus acidiphilus SJ4]
Length = 660
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 251/664 (37%), Positives = 388/664 (58%), Gaps = 44/664 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV L+ E+ N YY+ D P ++D YD L+ EL +E K+P+ +T DS T VG
Sbjct: 7 RVRWLRGEIETANKQYYVLDQPTMTDADYDALMRELIDLEAKHPDWVTPDSPTVRVGGEV 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H ++SLDN FS ED+ F++R+ ++T +EY+ ELK DG+ V L YE
Sbjct: 67 AKEYTKVRHLEPLLSLDNAFSAEDLREFDRRVR---QVTSTVEYVVELKIDGLTVALTYE 123
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
+ + +TRGDG +GE+IT N+ + IPL L P L VR E + K F +LN+
Sbjct: 124 NSLMVRGATRGDGEVGEDITPNVKTVKSIPLRLKDDVP--RLSVRGEGYMPKASFARLNQ 181
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAH---GVGELRGMNMPSSHSELL 253
R G F NPRNAAAG LRQLN KI + L +FA+ G EL G++ + +E+L
Sbjct: 182 EREEEGQATFANPRNAAAGSLRQLNSKITAQRKLDYFAYQVLGANEL-GLH---NQTEVL 237
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
+ ++ G + EY V ++++I F ++++ +R Y+IDG+V K+N + Q++LGFT
Sbjct: 238 TYLKEQGFIVNPEYKVFGTIDEVIGFCERMSSERHGFSYDIDGLVIKVNDFAVQQELGFT 297
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
+++PR+A+AYKF +++ T ++ I I++GRTG++TP A+L PVL+ G T++RATLHN
Sbjct: 298 AKSPRWAIAYKFPAEQVETVVEDILIRVGRTGVLTPTAVLTPVLVAGSTVSRATLHNLDN 357
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLI 433
I +K+I+IGD V++H++G+VIP++ + R + +IF++P CP C S + E +
Sbjct: 358 IRQKDIRIGDHVLLHKAGDVIPEVVKMLPEKRTGEERIFEMPEFCPECQSPVRQDEGEVA 417
Query: 434 ARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL 493
RC I C A+++ G+ HF SR AM I GLG +I++L++A ++ A DLY + F++L
Sbjct: 418 YRCQS--ITCPARQREGIIHFVSRDAMAIDGLGPAVIQQLLDARLISDAADLYSLTFEDL 475
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
+ L+R+ K A N+L AIQ SK I+ALGIRH GE K LA F +++ + KA+
Sbjct: 476 IPLERMGKKSAENLLKAIQDSKTRGLGPLIFALGIRHTGEKAGKVLAQRFGSMDQLMKAS 535
Query: 554 EEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK------------ 601
E+L IP IG T + + F + + I +LR G+ ++K
Sbjct: 536 LEELQGIPDIGPTMAENLVYFFSLESTQGFIEKLRQAGVDMTAEESSKPQIFAGKSIVVT 595
Query: 602 ------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFV 643
GGK + +SK T ++V G+K G KL KA +L ++IL E F
Sbjct: 596 GSLERWDRREIEKVIEDHGGKAASSVSKKTAFVVAGEKAGSKLTKAQELGVQILTEDEFD 655
Query: 644 KIVK 647
++K
Sbjct: 656 TLLK 659
>gi|297616809|ref|YP_003701968.1| DNA ligase, NAD-dependent [Syntrophothermus lipocalidus DSM 12680]
gi|297144646|gb|ADI01403.1| DNA ligase, NAD-dependent [Syntrophothermus lipocalidus DSM 12680]
Length = 668
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 243/662 (36%), Positives = 394/662 (59%), Gaps = 38/662 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R +L++E+ +H+ YY+ D P+ISD +YD+L EL ++E+ YP+L+T DS TQ VG
Sbjct: 7 RAEKLREEIRKHDYHYYVLDQPLISDAEYDRLFRELVELEQAYPDLVTPDSPTQRVGGEV 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H ++SLDN F++ ++ FN+R+ L + + Y+ ELK DG+++ L Y+
Sbjct: 67 LKGFTPVQHRVPLLSLDNAFNERELRDFNRRLKERLG-DEAVAYVCELKIDGVSIALVYQ 125
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +TRGDG +GE++T NI I +PL L YP +EVR EV + K+ F +LN+
Sbjct: 126 DGVLMSGATRGDGIVGEDVTANIRTIKSLPLRLT--YPLPRVEVRGEVYMPKEAFARLNR 183
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G K F NPRNAAAG +RQL+PK+ + L + + L G + S E L +
Sbjct: 184 EREDRGEKTFANPRNAAAGSIRQLDPKVTAGRTLGLLVYDILHLEGKEI-DSQRETLEFL 242
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++G + + + +++++E+ ++ +R LPYEIDGVV K+N L ++ LG T+++
Sbjct: 243 SELGFPVDRNFRWCASLDEVLEYCEEWQGRRHELPYEIDGVVVKLNSLPARQLLGATAKS 302
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E TKI AI + +GRTG+ITP A+++PV + G T++RA+LHN I
Sbjct: 303 PRWAIAYKFPAEEKETKIVAIELNVGRTGVITPTAVMEPVSLAGTTVSRASLHNYDLIRE 362
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I++GD VVVH++G++IP++ S+ R FK+P+ CP C S+++ + RC
Sbjct: 363 KDIRVGDMVVVHKAGDIIPEVVRSLPEKRTGKEIEFKMPDKCPACGSRVVRFSGEVAYRC 422
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
I C A+ K L F+SR+AM+I GLG ++E+LV+ +V DLY + + L L
Sbjct: 423 DN--INCPARLKESLIFFASREAMDIEGLGPALVEQLVDRGMVSNVADLYYLRAEELAGL 480
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A+++SK R + ALGIR+VG TA+ LA +++++E E+
Sbjct: 481 ERMGQKSAANLIRALEQSKGRPLHRLLNALGIRYVGLKTARILAEHYRDIERFSDIDREE 540
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN-------------------- 596
L++IP+IG ++ F +P + I +L+ G+ +
Sbjct: 541 LMSIPEIGEKIAESVTAFFAEPRNWDSIHKLKKAGVNTVEPEFSMAQDSQFAGKTFVLTG 600
Query: 597 -------NPNTK-----GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVK 644
N TK GGKV N +S+ T+++V G+ PG K +KA+ L + +LDE F++
Sbjct: 601 ALESMTRNEATKAIEDRGGKVTNSVSRKTDFVVAGRDPGSKYDKAVALGVTVLDENQFLQ 660
Query: 645 IV 646
++
Sbjct: 661 LL 662
>gi|254239878|ref|ZP_04933200.1| DNA ligase [Pseudomonas aeruginosa 2192]
gi|126193256|gb|EAZ57319.1| DNA ligase [Pseudomonas aeruginosa 2192]
Length = 794
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 240/596 (40%), Positives = 353/596 (59%), Gaps = 24/596 (4%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ +L+ EL HN YY+ D P I D +YD+L EL+ +E +YP+LLT DS TQ V
Sbjct: 10 RIAQLRTELDTHNYRYYVLDEPSIPDAEYDRLFRELQALEAEYPQLLTPDSPTQRVSGTP 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT----------KNIEYIAELKF 126
V H M+SL N F ++D++ F++R+ L +EY E K
Sbjct: 70 ASAFGEVRHEIPMLSLGNAFEEQDLLDFDRRVREGLADLLPGGDLLGGGAEVEYSCEPKL 129
Query: 127 DGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLI 186
DG+AV+L YE G L + +TRGDG+ GE+IT+N+ I +PL L+ + PE+LEVR EV +
Sbjct: 130 DGLAVSLLYERGQLVRGATRGDGSTGEDITSNVRTIRNVPLKLHGEGWPEILEVRGEVFM 189
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
K F LN G K F NPRNAAAG LRQL+ KI ++ L F A+G G++ G +P
Sbjct: 190 SKAGFEALNAKAVETGGKTFANPRNAAAGSLRQLDSKITASRPLEFCAYGFGQVSG-TLP 248
Query: 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306
+ +L ++ G+ I E ++ G ++Y I +R L YEIDGVV+K+N ++
Sbjct: 249 DTQVGILEAFRGWGIPISRELRLVKGAQACRDYYDDIGRRRDALAYEIDGVVFKVNRIAF 308
Query: 307 QKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRA 366
Q++LGF +R PR+A+A+KF ++E LT++ + Q+GRTG +TPVA LKPV + G+T+ A
Sbjct: 309 QRELGFRAREPRWAIAHKFPAREELTELLGVEFQVGRTGAVTPVARLKPVQVAGVTVFNA 368
Query: 367 TLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKI- 425
TLHN E+ R ++IGDTVV+ R+G+VIP++ +L RP D++ ++P CP+C S +
Sbjct: 369 TLHNMDEVARLGLRIGDTVVIRRAGDVIPQVMQVVLERRPADAQAIEVPEHCPVCGSAVE 428
Query: 426 -----------IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLV 474
I I RC G + C AQ K + HF SR+AM+I GLG K++E+LV
Sbjct: 429 RTQLVKRSKGKESISEGAIYRCVGR-LSCQAQLKQAIIHFVSRRAMDIDGLGDKIVEQLV 487
Query: 475 NANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGET 534
+ +V + DLY + ++ + L+ + NN+L AI S+ + +RFI+ALGI VGE
Sbjct: 488 DRGLVASPADLYTLTYEQVFELEGFAELSTNNLLTAIADSRKPSLARFIFALGIPDVGEE 547
Query: 535 TAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDV 590
TAK LA +LE + KA E L +P +G+ F +R +I+QLRD
Sbjct: 548 TAKLLARSLGSLERIGKALPEVLTYLPDVGAEVAYEIHNFFADEHNRQVIAQLRDA 603
>gi|344343455|ref|ZP_08774323.1| DNA ligase [Marichromatium purpuratum 984]
gi|343804878|gb|EGV22776.1| DNA ligase [Marichromatium purpuratum 984]
Length = 755
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 220/527 (41%), Positives = 338/527 (64%), Gaps = 2/527 (0%)
Query: 28 HNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTF 87
HN YY+ D+P I D+ YD+LL EL +E +YPEL+ DS TQ VG V H
Sbjct: 21 HNYRYYVLDDPEIPDDAYDRLLRELLALEAEYPELVGPDSPTQRVGAEPLAAFAEVEHRL 80
Query: 88 KMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRG 147
M+SLDN S E++ F R+ L + ++++AE K DG+A+NL YE G L +A+TRG
Sbjct: 81 PMLSLDNAKSAEELAAFTARVGKALG-REAVDFVAEPKLDGLAINLTYEDGVLTRAATRG 139
Query: 148 DGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFT 207
DG GE++T + + +PL L P LLEVR E+++ + F +LN G + F
Sbjct: 140 DGRRGEDVTAQVRTVRSVPLRLRGADWPRLLEVRGEIVLPTEGFARLNARMRESGQRTFA 199
Query: 208 NPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEY 267
NPRNAAAG LRQL+P + + L F +G G + G ++ ++L + GL + +
Sbjct: 200 NPRNAAAGSLRQLDPAVTATRPLAFVCYGFGAVEGGPACATQFQMLQALRDWGLPLSPQL 259
Query: 268 SVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLS 327
+SG++ + ++I +R LPY+IDGVV+K++ L+ Q+ LGF +RAPR+A+A+K+ +
Sbjct: 260 ERVSGLDGCDAYQRRIGAQREQLPYDIDGVVFKVDALADQQALGFVARAPRWAIAFKYPA 319
Query: 328 KEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVV 387
+EALT+++A+ Q+GRTG +TPVA L PV + G+T+ ATLHN E+ RK+++IGDTV V
Sbjct: 320 QEALTRVEAVEFQVGRTGAVTPVARLAPVQVGGVTVANATLHNMDEVVRKDVRIGDTVYV 379
Query: 388 HRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQR 447
R+G+VIP++ ++ RP D+K +P CP+C + ++ E +ARCSG + C AQR
Sbjct: 380 RRAGDVIPEVVRVLVERRPADAKAVALPAHCPVCGADVVRPEGEAVARCSGG-LYCPAQR 438
Query: 448 KAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNI 507
K L+HF+SR+A++I GLG K+I++LV +V DL++++ L L+R+ K A N+
Sbjct: 439 KEALKHFASRRALDIEGLGDKLIDQLVERELVHGPADLFRLDQAQLAGLERMGEKSAANL 498
Query: 508 LLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
+ A+ +++ T +RF+YALGIR VGE+TA+ LA F +L+ + A E
Sbjct: 499 IAALDRARSTDLARFVYALGIREVGESTARALARGFGSLDALMAARE 545
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 43/170 (25%)
Query: 522 FIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLN-----IPKIGSTTVKAFIKFIN 576
++ LG+R + + A+ L +F LE + A E L I IG + F
Sbjct: 584 WLLGLGVRGLTQPRAEALVEHFGTLEALRAADAEDLRAETRSLIEGIGPVVAAHIVAFFA 643
Query: 577 QPLHRLLISQLRDVGIYW------------------------------LNNPNTK----- 601
QP +R I+ LR+VG++W L+ P +
Sbjct: 644 QPHNREAIAALREVGVHWPEQGAAEADDAPVEPAARPLAGLTLVITGTLSRPRPEIKAWV 703
Query: 602 ---GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 648
G +V + +S T+YL+ G+ G KL +A L ++++DE ++ G
Sbjct: 704 ESLGARVSSSLSGKTDYLLAGEAAGSKLARARDLGVEVIDEAGLEALIGG 753
>gi|308271402|emb|CBX28010.1| DNA ligase [uncultured Desulfobacterium sp.]
Length = 674
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 266/664 (40%), Positives = 397/664 (59%), Gaps = 38/664 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
+V LK EL +HN YY+ D+P ISD +YD+++ EL ++E KYP L T DS + VG
Sbjct: 12 KVENLKSELQKHNYHYYVMDDPQISDTQYDKMMQELIELEAKYPMLSTPDSPSMKVGAEP 71
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + + H+ KM+SLDN FSD D++ F++R+ L + I Y AE K DG+AV L Y+
Sbjct: 72 VKKFEQIRHSVKMLSLDNAFSDSDILNFDRRVKEGLMADEQILYTAEPKMDGVAVELVYK 131
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYP----PELLEVRCEVLIYKKDFI 192
G L ASTRGDG GE+IT+N+ I +PL+L P LE R EV+I K+ F
Sbjct: 132 DGRLVSASTRGDGETGEDITSNVKTIRSVPLLLQQNKKEHIIPARLEARGEVIISKEGFK 191
Query: 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252
+LN+ GL F NPRNAAAG LRQL+ K+ + L + +GVGE+ G++ SH +
Sbjct: 192 RLNEDMLSQGLALFANPRNAAAGSLRQLDSKVTAKRPLEIYFYGVGEVEGISC-KSHWDW 250
Query: 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
L +++GL I +N + ++YK++ R LPY+IDG+V K++ + Q++LG
Sbjct: 251 LYALKELGLRINPYIKPKININAVCKYYKELEQMRSGLPYDIDGMVVKVDSVQYQEQLGT 310
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
+R+PR+A+AYKF + + TK+ I +Q+GRTG +TPVA L+ V I G+ ++RATLHNE
Sbjct: 311 KARSPRWAVAYKFKAIQETTKVLDILVQVGRTGAVTPVACLETVNIGGVNVSRATLHNED 370
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
EI K+I+IGDTV+V R+G+VIP+I I S R IF +P CP CNS++I E
Sbjct: 371 EIRNKDIRIGDTVLVQRAGDVIPEIVKVIDSARNGSEIIFCMPQNCPSCNSQLIRDEKES 430
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
+ RC + C A+ KA ++HF S++A +I GLG+K+I +L + + + D++ ++
Sbjct: 431 LIRCVNN--SCPAKTKAQIEHFVSKRAFDIDGLGEKLINQLFDKKYLSSYADIFYLDKIK 488
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
+ L+R+ K A N+ AI+KSK F+RFIYALGIRHVGE A+ LA+ ++ E A
Sbjct: 489 MEGLERMGLKSAGNLFEAIEKSKNINFARFIYALGIRHVGEHIAEILASKYEKYEKFCSA 548
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI---YWLNNPNTK-------- 601
T + L NI +G ++ I F+ + + I ++ + G+ Y N +T
Sbjct: 549 TYDDLKNIKGVGPIVAQSIIDFLGREDNLNNIERMLNSGVIIRYGENRKSTTLDGKIFVL 608
Query: 602 -------------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
GGK+ +SK T+YLV G+ PG K+EKA ++I+DE N
Sbjct: 609 TGTLESMTRNEAIIKIKSFGGKISESVSKKTDYLVAGKSPGSKIEKAKAAGVEIIDE-NK 667
Query: 643 VKIV 646
+KI+
Sbjct: 668 LKIM 671
>gi|301063517|ref|ZP_07204049.1| DNA ligase (NAD(+)) [delta proteobacterium NaphS2]
gi|300442456|gb|EFK06689.1| DNA ligase (NAD(+)) [delta proteobacterium NaphS2]
Length = 671
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 258/665 (38%), Positives = 384/665 (57%), Gaps = 39/665 (5%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ ELK+++ HN YY+ D+P I D YD+L L ++E K+PEL + DS T+ VG
Sbjct: 8 IDELKQKIEYHNHRYYVLDDPEIPDADYDRLFQRLLELETKHPELRSPDSPTRKVGGETK 67
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
V H M+SL+N F + ++ F+KR+ L ++Y E K DG+AV L Y+
Sbjct: 68 SGFSRVIHRSPMLSLENCFDPQQILDFDKRVRKFLGDDAPVQYTVEPKIDGLAVELVYKE 127
Query: 138 GYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIK---YP-PELLEVRCEVLIYKKDFIK 193
G L ASTRGDG +GE++T NI I +PL L + P P+LLEVR EV + F+K
Sbjct: 128 GRLSVASTRGDGRVGEDVTRNIKTILNVPLKLVTRKQSLPIPDLLEVRGEVYMDVAAFLK 187
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253
LN++R F NPRNAAAG LRQL+ +I + L F +GVG G++ +H E++
Sbjct: 188 LNEHRAARNESLFANPRNAAAGSLRQLDSRITARRRLDIFCYGVGNAEGLSF-KTHLEVM 246
Query: 254 NWYQKIGLSICGEY-SVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGF 312
Q GL + + ++ + ++ + I R PYEIDG V K+N L Q +LG
Sbjct: 247 MALQHWGLRVNRPHITICDTPDAVVSGCRHIEETRGLFPYEIDGAVIKVNRLDLQFRLGM 306
Query: 313 TSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNES 372
SR+PR+A+AYKF + +T + I++Q+GRTG +TPVA L PV + G+ ++RATLHN+
Sbjct: 307 KSRSPRWAMAYKFAPTQEMTTVLGIHVQVGRTGALTPVAQLAPVELGGVLVSRATLHNQE 366
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNL 432
EI RK+I+ GD V+V R+G+VIP++ ++ S R + K F +P CP C + II +
Sbjct: 367 EIDRKDIREGDQVIVQRAGDVIPEVVKTVFSKRTGNEKKFLMPEACPACGTAIIKKSGEV 426
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
+ARC + C AQ + ++HF S+ M+I GLG+K++ KL++ +V DLY++ +
Sbjct: 427 VARCPN--VNCPAQVRGSIRHFVSKGGMDIDGLGEKLVNKLLDKGLVKDEADLYELTRAD 484
Query: 493 LLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKA 552
LL LD + K A N+L AI+KSK + RFIYALGIRHVGE TA L+ F N+E + A
Sbjct: 485 LLGLDNIKEKSAANLLGAIEKSKAPSLGRFIYALGIRHVGEFTAALLSERFGNIESLSNA 544
Query: 553 TEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL-------NNP------- 598
E L I +G ++ + P +R L+ +L G+ + + P
Sbjct: 545 GLEALSAIDGVGPQIAESVFNYFADPQNRALLERLFKAGVTPVSTRLKPADTPVAGKTFV 604
Query: 599 -----------------NTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKN 641
KGGK + +S+NT+YLV G +PG KL+KA +L++ IL+EK
Sbjct: 605 LTGTLASVKRSEAKEMITQKGGKAGSSVSRNTDYLVAGDEPGSKLQKARELDVAILNEKE 664
Query: 642 FVKIV 646
F+ ++
Sbjct: 665 FLDLL 669
>gi|259047691|ref|ZP_05738092.1| DNA ligase, NAD-dependent [Granulicatella adiacens ATCC 49175]
gi|259035882|gb|EEW37137.1| DNA ligase, NAD-dependent [Granulicatella adiacens ATCC 49175]
Length = 668
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 252/664 (37%), Positives = 385/664 (57%), Gaps = 46/664 (6%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ +LK++L+R + YY+ D P +D +YD+ EL +E+++PE +T DS TQ VG
Sbjct: 10 RIEQLKEQLNRWSHEYYVEDKPTATDAEYDKAYHELLALEKEHPEFVTADSPTQRVGGEV 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLT-KNIEYIAELKFDGIAVNLRY 135
E + V HT M+SL N FS ED+ F+ R+ KLT + IEY+ ELK DG+++ L Y
Sbjct: 70 LEQFQKVTHTNPMLSLSNAFSKEDLEEFDARLR---KLTNRAIEYVCELKIDGLSIALTY 126
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
+ G L+ +TRGDG GE++T N+ I +PL L P +EVR E + KK F+ LN
Sbjct: 127 QNGQLQLGATRGDGTTGEDVTGNVRTIKSVPLSLK---EPWNIEVRGECYMPKKSFVALN 183
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
K R GL+ F NPRNAAAG LRQL+PKI + L F + + +N+ S+ ELL
Sbjct: 184 KSREEEGLEVFANPRNAAAGSLRQLDPKIAAKRNLSVFLYSSPSVEELNV-STQEELLRK 242
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+IG E ++++ + + I KR LPYEIDG+V K+N +TQ+++G+T +
Sbjct: 243 MAEIGFVTNPERLKCQTIDEVWNYIETIGAKRQELPYEIDGMVIKVNDFATQEEIGYTVK 302
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A+AYKF ++EA T ++ + +GRTG++TP A++ PV + G T+ RA+LHN +
Sbjct: 303 APRWAIAYKFPAEEAQTVVRDVEWTVGRTGVVTPTAVMDPVQLAGTTVRRASLHNIDLMK 362
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
++I++ DTVV+H++G++IP++T IL RP S+ ++ P CP+C+ K+ ++E + R
Sbjct: 363 ERDIRLEDTVVIHKAGDIIPEVTRVILEKRPATSQPYEFPTTCPVCHEKLEHLEDEVAIR 422
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR 495
C +C AQ G+ HF SR AMN+ G+G +I++ +V+ DLYK+ LL
Sbjct: 423 CLNP--KCPAQLTEGMSHFVSRNAMNMSGIGPSIIKQFFEEGLVLDVADLYKLTLDQLLE 480
Query: 496 LDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEE 555
LD++ K A NIL AI+ SK + R + LGIRHVG AKELA +F+N++ + +A+ E
Sbjct: 481 LDKIQQKSAENILEAIENSKANSLERLLTGLGIRHVGTKAAKELAQHFENMKALQEASIE 540
Query: 556 QLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI----------------------- 592
QLL I +G + + QP + LI +L+D G+
Sbjct: 541 QLLEIDGLGDIIAYSVKTYFEQPSVQELIQELQDRGVNMSYLGKTKADSEASGHILSGKT 600
Query: 593 -------YWLNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
L + K G KV +SK T+ ++ G G KL+KA L I++ E
Sbjct: 601 VVLTGTLEQLTRQDAKEKLESLGAKVTGSVSKKTDVVIAGYSAGSKLDKANSLGIEVWSE 660
Query: 640 KNFV 643
+ F+
Sbjct: 661 QQFL 664
>gi|332982281|ref|YP_004463722.1| NAD-dependent DNA ligase [Mahella australiensis 50-1 BON]
gi|332699959|gb|AEE96900.1| DNA ligase, NAD-dependent [Mahella australiensis 50-1 BON]
Length = 665
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 250/657 (38%), Positives = 389/657 (59%), Gaps = 39/657 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV EL++ + HN YY+ D+P ISD +YD L+ EL+++E KYPE++T DS TQ VG
Sbjct: 10 RVNELRQIIEHHNYMYYVLDSPEISDAEYDALMRELEQLESKYPEIITPDSPTQRVGGQV 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ V H+ ++SL++ FS+ ++ F++R+ L ++++Y+ E+K DG++V L Y+
Sbjct: 70 SGQFQPVVHSVPLLSLNDVFSESEIRDFDRRV--RAALNEDVQYVLEVKIDGLSVALTYQ 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G + +TRGDG +GE++T N+ I IPL L + P +EVR EV + KK F KLN+
Sbjct: 128 DGLFIRGATRGDGFVGEDVTANLRTIRSIPLRLKM---PINVEVRGEVFMPKKYFYKLNE 184
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R GL F NPRNAAAG +RQL+P I + L F + + G +H E L +
Sbjct: 185 QREKDGLPLFANPRNAAAGSVRQLDPAITAQRHLDIFVFNLQRIEGYAF-ETHVESLMFL 243
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++ G I +++ IE + KR+ LPYEIDG+V K+N L ++ LG TS+
Sbjct: 244 KEQGFKIMPYLIPCDTIDEAIEQCRLWEGKRYELPYEIDGLVIKVNSLRQREILGNTSKT 303
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++ + IK I +Q+GRTG++TP A+L+PV + G T++RATLHNE I
Sbjct: 304 PRWAVAYKFPAERKESIIKHIVVQVGRTGVLTPTAVLEPVRLAGTTVSRATLHNEDYIKE 363
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD V+V ++G++IP++ S I R D +IF++P+ CP+C + + I+ RC
Sbjct: 364 KDIRIGDHVLVQKAGDIIPEVVSVIKEKRTGDERIFEMPDKCPVCGADAVRIDGEAARRC 423
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G + C AQ + GL HF+SR AM+I GLG ++ +L+N ++ D+Y + +++L++L
Sbjct: 424 TG--VSCPAQVERGLIHFASRDAMDIEGLGPAVVRQLLNKKLIRDEADIYYLKYEDLVKL 481
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ AIQ SK +R +YALGI VG A LA F ++ + KA + Q
Sbjct: 482 ERMGPKSAQNLINAIQASKDRGLARLLYALGIPLVGTRAASILAERFGDIYELMKADQAQ 541
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------- 601
L IP+IG ++ + F Q + LI +L G+ + K
Sbjct: 542 LTAIPEIGPKIAESVVTFFKQEQTKDLIKRLETAGVRLTADKKQKGNAPLAGLTFVLTGT 601
Query: 602 ----------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNF 642
GGKV +SK T+Y++ G PG KL+KA++L +K++DE F
Sbjct: 602 LSKYTREQATEIIEGLGGKVTGSVSKKTDYVIAGDGPGSKLDKALQLGVKVIDENEF 658
>gi|312135376|ref|YP_004002714.1| DNA ligase, nad-dependent [Caldicellulosiruptor owensensis OL]
gi|311775427|gb|ADQ04914.1| DNA ligase, NAD-dependent [Caldicellulosiruptor owensensis OL]
Length = 673
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 258/666 (38%), Positives = 384/666 (57%), Gaps = 38/666 (5%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL ++ H+ YY+ DNP ISD +YD L EL ++E++YPE + DS TQ VG
Sbjct: 8 RIRELVDLINYHDYKYYVEDNPEISDYEYDMLYRELVELEKQYPEYVLPDSPTQRVGGKV 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E K V H ++SL N F++ ++ F++R+ EL T + +Y+ E K DG++V L YE
Sbjct: 68 KEGFKEVVHRVPLLSLSNVFNEGELYDFDRRL-KELLGTSDFDYVVEYKIDGLSVALEYE 126
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G + +TRGDGNIGE++T N+ I IPL L + VR EV + K +FIKLN+
Sbjct: 127 NGLFVRGATRGDGNIGEDVTENLKTIRSIPLRLKEDIS---IVVRGEVFMPKDEFIKLNQ 183
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R F NPRNAAAG LRQL+PKI + L F V +H+E L +
Sbjct: 184 EREENEEPLFANPRNAAAGSLRQLDPKITAQRKLDIFVFNVQWCE--KEIETHAEALEYM 241
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K+G + +Y V + ++ E +KI KR +LP+EIDG V K+N L + G T+++
Sbjct: 242 RKLGFKVSPDYVVCKDIKEVYEVIRKIEEKRDSLPFEIDGAVVKLNQLRLRDVAGETAKS 301
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++ TK+ I + +GRTGI+TP A+L+PV I G ++RATLHN I +
Sbjct: 302 PRWAVAYKFPPEKKETKLLDIEVNVGRTGILTPTAILEPVRISGSVVSRATLHNMDYIRQ 361
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGDTV+V ++ +IP++ + S R +IF++P CP+C + +I E + RC
Sbjct: 362 KDIRIGDTVIVQKAAEIIPEVVEVVFSKRTGQERIFEMPKKCPVCGADVIKFEDEVAYRC 421
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G +EC A+ + HF SR AM+I G+G+ +++ L ++ T D+Y + F++L+ L
Sbjct: 422 TG--VECPAKSYRLILHFVSRDAMDIAGMGEMVVKTLFERGLIKTPADIYYLKFEDLVNL 479
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R K NN+L AIQ SK R IYALGIRH+G+ AK LA + +++ +F TEEQ
Sbjct: 480 ERFGVKSTNNLLKAIQASKNRPLDRLIYALGIRHIGQKAAKTLAEHISSIDDLFTITEEQ 539
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK--------------- 601
LL +P G K+ + F Q R LI +L+ G+ ++ K
Sbjct: 540 LLALPDFGEKMAKSVVTFFRQEQTRHLIERLKAAGVNTVSEKKAKSNILKDYTFVLTGAL 599
Query: 602 ---------------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
G KV +SK T ++ GQ PG K KA +L +KIL+E++F K+V
Sbjct: 600 SKYSRNEAKEILESLGAKVTESVSKKTTAVIVGQDPGSKYTKAQQLGVKILNEEDFEKLV 659
Query: 647 KGFSTE 652
K S E
Sbjct: 660 KASSRE 665
>gi|299535244|ref|ZP_07048568.1| DNA ligase [Lysinibacillus fusiformis ZC1]
gi|424740338|ref|ZP_18168739.1| DNA ligase [Lysinibacillus fusiformis ZB2]
gi|298729365|gb|EFI69916.1| DNA ligase [Lysinibacillus fusiformis ZC1]
gi|422946155|gb|EKU40574.1| DNA ligase [Lysinibacillus fusiformis ZB2]
Length = 667
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 250/672 (37%), Positives = 388/672 (57%), Gaps = 48/672 (7%)
Query: 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQ 70
+++ R+ EL K LH + AYY+ D P+++D+ YDQLL EL +EE P L+ DS TQ
Sbjct: 1 MNEIEQRIAELNKLLHEYGYAYYVLDKPVVADSVYDQLLQELIALEEANPSLIYPDSPTQ 60
Query: 71 HVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIA 130
VG E K V H + M+SL N F++ D+ F++++ + Y+ ELK DG+A
Sbjct: 61 RVGGAVVEGFKKVTHDYPMLSLSNAFNEADLREFDRKVRQ--AIGDQFSYVCELKIDGLA 118
Query: 131 VNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKD 190
++L+YE G Q +TRGDG +GE+IT N+ I IPL L P +EVR E + KK
Sbjct: 119 ISLKYENGMFVQGATRGDGVVGEDITANLKTIRAIPLRLK---EPITIEVRGEAYMPKKS 175
Query: 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAH---GVGELRGMNMPS 247
F LN R G + F NPRNAAAG LRQL+PKI ++ L F + G GE+ G++
Sbjct: 176 FENLNAQRADNGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEVYGID--- 232
Query: 248 SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQ 307
H+E+L++ + +G E S + +++ F + R L YEIDG+V K++ + Q
Sbjct: 233 GHAEMLDYLEGLGFPSNKERQRCSTIEEVMAFIEHWTENRPKLAYEIDGIVIKVDRYAQQ 292
Query: 308 KKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRAT 367
+LG+T+++PR+A+AYKF ++E +T + I++ +GRTG++TP A+L PV + G T+ RA+
Sbjct: 293 DELGYTAKSPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILTPVQVAGTTVQRAS 352
Query: 368 LHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIY 427
LHNE I K+I++GDTV++ ++G++IP++ ++ RP DS F +P CP+C+S++I
Sbjct: 353 LHNEDLIRDKDIRLGDTVIIRKAGDIIPQVVGVLIEQRPEDSVPFVMPKNCPVCDSELIR 412
Query: 428 IESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYK 487
IE + RC C AQ +++F SR AMNI GLG K++E+L+ A+++ DLY
Sbjct: 413 IEGEVALRCVNPA--CFAQIAESIKYFVSRNAMNIDGLGDKVVEQLLRADLIHDVSDLYH 470
Query: 488 INFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLE 547
+ + L+ L+R+ K A N++ AIQ SK + R + LGIRHVGE AK ++ F ++E
Sbjct: 471 LTVEQLVELERMGEKSATNLVNAIQASKENSMERLLIGLGIRHVGEKAAKIVSEEFGSME 530
Query: 548 CMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWL------------ 595
+ ATEEQL+ I +IG + +++ + R +I +L D G+
Sbjct: 531 AVMAATEEQLVAIYEIGDKMASSLVEYFSNEDARAVIERLADAGVNMTYKGKKVEVAIGD 590
Query: 596 -------------------NNPNTK----GGKVVNFISKNTNYLVKGQKPGKKLEKAIKL 632
N K GG V +SK T+ ++ G G KL KA +L
Sbjct: 591 SPFAGKTIVLTGKLEQLTRNEAKAKIEELGGTVTGSVSKKTDLVIAGADAGSKLTKAEQL 650
Query: 633 NIKILDEKNFVK 644
I++ E N ++
Sbjct: 651 GIEVWTEDNLIE 662
>gi|400289135|ref|ZP_10791167.1| NAD-dependent DNA ligase [Psychrobacter sp. PAMC 21119]
Length = 692
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 259/660 (39%), Positives = 377/660 (57%), Gaps = 44/660 (6%)
Query: 25 LHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVH 84
L +HN AYY+ DNPI+ D++YDQL L ++EE+YP+L+ DS VG + V
Sbjct: 37 LKQHNYAYYVLDNPILEDSEYDQLRRSLLELEEEYPDLVQPDSPINQVGDMPLSAFTQVT 96
Query: 85 HTFKMMSLDNGFSDEDVIIFNKRITNEL-KLTKNIEYIAELKFDGIAVNLRYEYGYLKQA 143
H M+SL N F +++ F +R+ + L KN EY ELK DG+AV+L+YE+G QA
Sbjct: 97 HDIPMLSLGNVFDYDELHAFMRRVNDRLNDAQKNPEYEMELKLDGLAVSLKYEHGKFVQA 156
Query: 144 STRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGL 203
TRGDG GE+IT N I +PL L ELLEVR EVL+ K F +LN+
Sbjct: 157 VTRGDGQTGEDITQNTKTIRNLPLWLADAADIELLEVRGEVLMPKAGFDRLNRLAEESEN 216
Query: 204 KKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSS---HSELLNWYQKIG 260
K F NPRNAAAG LRQL+P I ++ L F+A+ + + +P + S L W + IG
Sbjct: 217 KTFANPRNAAAGSLRQLDPAIAASRPLAFYAYSINQ----GLPETIETQSAGLAWLKTIG 272
Query: 261 LSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFA 320
++ V++ +Y+ + R +LP+EIDG+V K+N LS Q++LGF SR PR+A
Sbjct: 273 FTVSA-VEVVANPRAAQTYYESVIESRASLPFEIDGMVIKVNNLSLQQQLGFLSREPRWA 331
Query: 321 LAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQ 380
AYKF ++ +T++ I Q+GRTG ITPV L+PV + G+T++ TLHN EI R +++
Sbjct: 332 TAYKFPAETVMTRLNDIEWQVGRTGAITPVGKLEPVKVGGVTVSNVTLHNFGEIQRLDVR 391
Query: 381 IGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSW 440
GD V VHR+G+VIPK+T R DSK +P+ CP+C+S ++ + +ARC+G
Sbjct: 392 AGDMVSVHRAGDVIPKVTRVWHDQRSADSKPVTLPSTCPVCDSPVVLPKDEALARCTGGL 451
Query: 441 IECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI--NFKNLLRLDR 498
C AQ++ L HF SR+AM+I GLG + +V T D+Y++ + L+ L++
Sbjct: 452 F-CPAQQQEALIHFVSRRAMDIDGLGASWLISFFEHGLVKTVADIYQLHNHQDELITLEK 510
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K NI+ AI+ SK TT +RFIYALGIR VGE TA+ A F +L+ + A+ E L+
Sbjct: 511 LGEKSVQNIISAIEASKHTTLARFIYALGIRGVGEGTAQNFAQQFGDLDSLMAASIETLI 570
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW------------------------ 594
P +G+ T + +F P + +I+ L + G++W
Sbjct: 571 KTPDVGTITAELAYEFFRAPHNIEVINSLLEAGVHWDKVEQKAAEDLPLDGQTWVITGAL 630
Query: 595 --LNNPNTK------GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
+ K G KV IS T L+ G K G KL KA KL++KI+ E+ F+ +V
Sbjct: 631 EKMARDEAKAKLQALGAKVSGSISAKTTALLAGDKAGSKLTKAEKLDVKIVGEEEFLAMV 690
>gi|418295507|ref|ZP_12907362.1| NAD-dependent DNA ligase LigA [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
gi|379066845|gb|EHY79588.1| NAD-dependent DNA ligase LigA [Pseudomonas stutzeri ATCC 14405 =
CCUG 16156]
Length = 792
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 240/600 (40%), Positives = 357/600 (59%), Gaps = 22/600 (3%)
Query: 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHV 72
K + R+ EL+ E+ HN YY+ D P + D +YD+L ELK +E ++PEL+T +S TQ V
Sbjct: 6 KAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELVTPESPTQRV 65
Query: 73 GLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN--------IEYIAEL 124
G V H M+SL N F ++D++ F++R+ L L +EY E
Sbjct: 66 GGAALAAFGQVRHEVPMLSLGNAFDEQDLLDFDRRVREGLDLPAGDLFSDGAVVEYSCEP 125
Query: 125 KFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEV 184
K DG+AV+L YE G+L + +TRGDG+ GE+I+ N+ + IPL L+ P +LEVR E+
Sbjct: 126 KLDGLAVSLLYEKGHLVRGATRGDGSTGEDISANVRTVRNIPLKLHGSGWPAVLEVRGEI 185
Query: 185 LIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN 244
+ K F LN + G K F NPRNAAAG LRQL+ KI ++ L A+GVG G
Sbjct: 186 YMPKAGFEALNARQLESGGKPFANPRNAAAGSLRQLDSKITASRPLELCAYGVGRSDG-E 244
Query: 245 MPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCL 304
+P++H +LN + GL I E + +G + +Y I +KR LPYEIDGVV+K+N +
Sbjct: 245 LPATHIGILNALKGWGLPISRELKLANGAAECRAYYDAIGLKRDTLPYEIDGVVFKVNAV 304
Query: 305 STQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITIT 364
+ Q++LGF +R PR+A+A+KF ++E +T++ + Q+GRTG ITPVA LKPV + G+T++
Sbjct: 305 AQQRELGFRAREPRWAIAHKFPAREEITELLGVEFQVGRTGAITPVARLKPVQVAGVTVS 364
Query: 365 RATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSK 424
ATLHN E+ R + IGDTV+V R+G+VIP+I I RP D++ +P CP+C S
Sbjct: 365 NATLHNMDEVARLGVMIGDTVIVRRAGDVIPQILGVIAERRPADAQAVHVPQQCPVCGSA 424
Query: 425 I------------IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEK 472
+ + I RC G + C AQ K + HF SR+AM+I GLG K++E+
Sbjct: 425 VERTQLIKRSKGRESVSEGSIYRCVGR-LACQAQLKQAIIHFVSRRAMDIDGLGDKIVEQ 483
Query: 473 LVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVG 532
LV+ +V + DLY + + ++ L+ + N+L AI S+ + +RF+YALGI VG
Sbjct: 484 LVDKGLVRSPADLYCLTHEQVIELEGFAEISTRNLLHAIDASRKPSLARFVYALGIPDVG 543
Query: 533 ETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI 592
E TAK LA +LE + +A + L+ +P +G F +R +I+QLR+ G+
Sbjct: 544 EETAKLLARALGSLERISRALPDVLVYLPDVGLEVAHEIHSFFEDEHNRTVIAQLRERGV 603
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 35/171 (20%)
Query: 514 SKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIK 573
+ T + I L I + T AK LA+ F L+ + A L + ++ ++
Sbjct: 616 AACATLAGLIDKLNIPFIASTGAKRLADRFGGLDALIAADWLDLRQVERLTEKAARSLRD 675
Query: 574 FINQP--LHRL--LISQLRDVGIYWLNNPNTKGG-------------------------- 603
+ ++P HR + +QLR+ G++W + G
Sbjct: 676 YFDKPENAHRARQIEAQLREFGMHWQSERKQAAGLPLAGQTWVLTGTLESMSRDEGKARL 735
Query: 604 -----KVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGF 649
KV +S T +V G G KL KA +L +++LDE+ F++ + G
Sbjct: 736 EALGAKVAGSVSAKTTCVVAGPGAGSKLTKANELGLQVLDEEAFLERLSGL 786
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.139 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,696,016,896
Number of Sequences: 23463169
Number of extensions: 411529305
Number of successful extensions: 1062478
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5277
Number of HSP's successfully gapped in prelim test: 235
Number of HSP's that attempted gapping in prelim test: 1032461
Number of HSP's gapped (non-prelim): 10629
length of query: 655
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 506
effective length of database: 8,863,183,186
effective search space: 4484770692116
effective search space used: 4484770692116
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)