Query psy11423
Match_columns 655
No_of_seqs 254 out of 1828
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 18:03:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11423.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11423hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2owo_A DNA ligase; protein-DNA 100.0 6E-186 2E-190 1572.6 66.7 633 13-647 3-670 (671)
2 1dgs_A DNA ligase; AMP complex 100.0 1E-180 5E-185 1527.7 57.7 627 12-650 4-662 (667)
3 4glx_A DNA ligase; inhibitor, 100.0 1E-175 4E-180 1471.0 64.4 585 11-596 1-585 (586)
4 3sgi_A DNA ligase; HET: DNA AM 100.0 3E-176 1E-180 1474.6 18.9 585 8-596 7-602 (615)
5 3uq8_A DNA ligase; adenylated 100.0 2E-103 5E-108 826.0 33.6 320 14-333 2-322 (322)
6 3jsl_A DNA ligase; NAD+-depend 100.0 6E-102 2E-106 811.9 32.5 311 13-330 3-313 (318)
7 1ta8_A DNA ligase, NAD-depende 100.0 3E-101 9E-106 812.2 35.8 322 9-336 6-327 (332)
8 1b04_A Protein (DNA ligase); D 100.0 5E-101 2E-105 806.9 35.6 315 12-333 4-318 (318)
9 1zau_A DNA ligase; AMP; HET: D 100.0 8E-100 3E-104 800.4 22.9 317 9-328 8-328 (328)
10 4glw_A DNA ligase; inhibitor, 100.0 5.2E-98 2E-102 784.1 26.6 305 14-327 1-305 (305)
11 2vug_A PAB1020; RNA, ligase, A 100.0 4E-38 1.4E-42 340.6 -6.6 223 38-330 42-270 (389)
12 1l7b_A DNA ligase; BRCT, autos 99.1 2.2E-11 7.5E-16 105.8 3.6 51 600-650 32-82 (92)
13 2k6g_A Replication factor C su 99.1 6.7E-11 2.3E-15 105.9 5.5 49 600-648 58-107 (109)
14 2ebu_A Replication factor C su 99.1 8.7E-11 3E-15 105.5 5.5 50 600-649 48-98 (112)
15 2a1j_B DNA excision repair pro 98.9 2E-09 6.9E-14 93.1 5.6 66 514-579 22-88 (91)
16 1z00_A DNA excision repair pro 98.7 2E-08 6.8E-13 86.3 7.4 61 518-578 13-74 (89)
17 2cok_A Poly [ADP-ribose] polym 98.7 4.5E-09 1.5E-13 94.5 2.6 47 600-647 35-84 (113)
18 1x2i_A HEF helicase/nuclease; 98.6 3.5E-08 1.2E-12 81.5 5.5 56 526-581 17-72 (75)
19 2a1j_A DNA repair endonuclease 98.6 2.4E-08 8.2E-13 80.5 4.2 50 527-578 8-58 (63)
20 1kft_A UVRC, excinuclease ABC 98.5 7.6E-08 2.6E-12 80.6 4.4 50 527-576 28-77 (78)
21 1z00_B DNA repair endonuclease 98.4 1.6E-07 5.5E-12 80.0 5.1 52 527-580 22-74 (84)
22 1fvi_A Chlorella virus DNA lig 98.3 5.9E-06 2E-10 86.3 14.1 200 118-376 19-257 (297)
23 1vs0_A Putative DNA ligase-lik 98.1 3.3E-05 1.1E-09 81.1 15.8 203 118-376 25-241 (310)
24 3c65_A Uvrabc system protein C 98.1 2.9E-07 9.9E-12 92.2 0.0 50 526-576 176-225 (226)
25 2nrt_A Uvrabc system protein C 98.1 1.1E-06 3.9E-11 87.4 3.9 49 526-576 171-220 (220)
26 2bgw_A XPF endonuclease; hydro 98.1 2.5E-06 8.6E-11 85.0 6.1 52 527-578 166-217 (219)
27 3gde_A DNA ligase; DNA-binding 98.1 4.7E-05 1.6E-09 86.0 16.4 215 119-377 246-479 (558)
28 4gfj_A Topoisomerase V; helix- 98.0 6.2E-06 2.1E-10 87.4 7.6 100 460-573 413-517 (685)
29 1a0i_A DNA ligase; DNA replica 98.0 0.00011 3.7E-09 78.3 16.2 230 119-376 27-289 (348)
30 2cfm_A Thermostable DNA ligase 97.9 0.00012 4.2E-09 82.8 16.6 217 119-377 243-479 (561)
31 1ixr_A Holliday junction DNA h 97.9 1.2E-05 4.1E-10 78.7 6.9 73 492-578 55-130 (191)
32 3qwu_A DNA ligase; structural 97.9 8.6E-05 2.9E-09 79.1 13.9 143 118-303 73-222 (370)
33 1cuk_A RUVA protein; DNA repai 97.8 1.4E-05 4.6E-10 79.1 5.5 72 491-576 55-129 (203)
34 2hiv_A Thermostable DNA ligase 97.8 0.00018 6E-09 82.4 15.2 217 119-377 274-517 (621)
35 1x9n_A DNA ligase I; 5'-adenyl 97.8 0.00033 1.1E-08 81.0 17.4 220 118-376 330-576 (688)
36 3l2p_A DNA ligase 3; DNA ligas 97.8 0.00069 2.4E-08 76.8 18.5 215 118-378 247-488 (579)
37 2d8m_A DNA-repair protein XRCC 97.7 2E-05 6.7E-10 72.2 4.4 48 600-647 47-94 (129)
38 3c1y_A DNA integrity scanning 97.5 7.2E-05 2.4E-09 79.8 5.8 51 527-577 319-369 (377)
39 1ckm_A MRNA capping enzyme; nu 97.4 0.00094 3.2E-08 70.6 12.9 152 118-326 75-238 (330)
40 3l3e_A DNA topoisomerase 2-bin 97.4 0.00015 5E-09 64.0 5.6 48 600-647 40-90 (107)
41 3vnn_A DNA ligase 4; non-homol 97.3 0.00055 1.9E-08 63.4 8.2 117 120-259 1-125 (139)
42 2ztd_A Holliday junction ATP-d 97.2 0.00048 1.6E-08 68.3 7.0 74 490-577 69-145 (212)
43 1kft_A UVRC, excinuclease ABC 97.1 0.00026 8.9E-09 58.9 3.5 53 458-512 25-77 (78)
44 1vq8_Y 50S ribosomal protein L 97.1 5.9E-05 2E-09 76.3 -0.5 58 458-516 16-73 (241)
45 1vq8_Y 50S ribosomal protein L 97.1 8E-05 2.7E-09 75.4 0.0 51 526-576 18-69 (241)
46 1wcn_A Transcription elongatio 97.1 0.00073 2.5E-08 55.3 5.8 56 456-512 6-61 (70)
47 2w9m_A Polymerase X; SAXS, DNA 97.1 0.00073 2.5E-08 76.7 7.8 81 493-573 59-149 (578)
48 2w9m_A Polymerase X; SAXS, DNA 97.1 0.00031 1E-08 79.8 4.4 57 458-515 98-155 (578)
49 2duy_A Competence protein come 97.1 0.00026 8.8E-09 58.5 2.8 44 527-576 31-74 (75)
50 1z00_A DNA excision repair pro 97.0 0.00094 3.2E-08 56.9 5.7 52 460-513 22-73 (89)
51 3b0x_A DNA polymerase beta fam 96.9 0.00054 1.8E-08 77.8 4.7 58 458-515 94-152 (575)
52 3b0x_A DNA polymerase beta fam 96.9 0.0021 7.2E-08 72.9 9.5 95 481-575 43-148 (575)
53 1x2i_A HEF helicase/nuclease; 96.9 0.001 3.5E-08 54.3 4.9 54 459-514 16-69 (75)
54 2a1j_B DNA excision repair pro 96.8 0.001 3.5E-08 57.0 4.9 52 460-513 35-86 (91)
55 3olc_X DNA topoisomerase 2-bin 96.8 0.0009 3.1E-08 69.8 5.5 48 600-647 224-272 (298)
56 1u9l_A Transcription elongatio 96.3 0.0049 1.7E-07 50.4 5.3 53 460-513 9-61 (70)
57 3ef0_A RNA polymerase II subun 96.3 0.0034 1.2E-07 67.4 5.6 48 600-647 311-359 (372)
58 3ef1_A RNA polymerase II subun 96.3 0.0038 1.3E-07 68.3 5.7 48 600-647 381-429 (442)
59 1b22_A DNA repair protein RAD5 96.1 0.0047 1.6E-07 55.3 4.5 50 464-514 32-81 (114)
60 2hvq_A ORF1, hypothetical 37.6 96.0 0.026 9E-07 59.7 10.8 137 89-266 6-153 (335)
61 1p16_A GTP--RNA, mRNA capping 96.0 0.024 8.1E-07 61.3 10.6 175 118-340 60-260 (395)
62 2a1j_A DNA repair endonuclease 96.0 0.006 2E-07 48.8 4.2 50 459-512 6-56 (63)
63 3olc_X DNA topoisomerase 2-bin 96.0 0.0062 2.1E-07 63.4 5.5 48 600-647 130-177 (298)
64 1z3e_B DNA-directed RNA polyme 95.9 0.012 4.1E-07 48.5 5.9 51 462-513 13-63 (73)
65 1wcn_A Transcription elongatio 95.8 0.017 5.8E-07 47.1 6.3 48 527-574 11-59 (70)
66 4gfj_A Topoisomerase V; helix- 95.6 0.0061 2.1E-07 65.0 3.4 108 460-572 471-617 (685)
67 3gfk_B DNA-directed RNA polyme 95.6 0.019 6.6E-07 47.9 5.8 49 464-513 22-70 (79)
68 3kyh_C MRNA-capping enzyme sub 95.5 0.087 3E-06 57.8 12.4 146 118-306 65-238 (461)
69 3k4g_A DNA-directed RNA polyme 95.4 0.021 7.3E-07 48.4 5.7 49 464-513 18-66 (86)
70 1s68_A RNA ligase 2; ribonucle 95.4 0.056 1.9E-06 54.7 9.8 148 90-278 6-163 (249)
71 2edu_A Kinesin-like protein KI 95.4 0.01 3.5E-07 51.4 3.7 22 552-573 67-88 (98)
72 2duy_A Competence protein come 95.3 0.0056 1.9E-07 50.3 1.6 24 486-509 22-45 (75)
73 3pa6_A Microcephalin; BRCT dom 95.2 0.019 6.7E-07 50.7 5.0 48 600-647 36-83 (107)
74 1ixr_A Holliday junction DNA h 95.2 0.013 4.3E-07 57.2 4.0 54 459-512 74-128 (191)
75 2bcq_A DNA polymerase lambda; 95.1 0.025 8.5E-07 59.8 6.2 62 491-552 57-126 (335)
76 1z00_B DNA repair endonuclease 95.0 0.017 5.9E-07 48.8 3.9 50 459-512 20-70 (84)
77 2bgw_A XPF endonuclease; hydro 94.9 0.02 6.8E-07 56.6 4.7 53 459-513 164-216 (219)
78 4id3_A DNA repair protein REV1 94.9 0.018 6E-07 48.5 3.6 47 600-648 32-80 (92)
79 4glx_A DNA ligase; inhibitor, 94.9 0.022 7.6E-07 64.4 5.4 85 457-549 480-570 (586)
80 2owo_A DNA ligase; protein-DNA 94.8 0.021 7.1E-07 65.6 5.1 81 458-546 481-567 (671)
81 1cuk_A RUVA protein; DNA repai 94.8 0.026 8.8E-07 55.5 5.1 54 459-512 75-129 (203)
82 1s5l_U Photosystem II 12 kDa e 94.7 0.019 6.5E-07 52.5 3.5 26 483-508 55-80 (134)
83 2h56_A DNA-3-methyladenine gly 94.6 0.1 3.4E-06 52.3 8.9 81 468-574 71-157 (233)
84 2edu_A Kinesin-like protein KI 94.6 0.049 1.7E-06 47.1 5.8 58 482-542 31-89 (98)
85 1dgs_A DNA ligase; AMP complex 94.6 0.037 1.3E-06 63.5 6.3 80 458-545 476-561 (667)
86 1pu6_A 3-methyladenine DNA gly 94.4 0.16 5.6E-06 50.2 10.0 82 468-575 50-141 (218)
87 2fmp_A DNA polymerase beta; nu 94.4 0.063 2.2E-06 56.7 7.4 62 491-552 57-128 (335)
88 2csb_A Topoisomerase V, TOP61; 94.3 0.2 6.7E-06 50.6 10.2 118 443-565 363-509 (519)
89 3rtx_A MRNA-capping enzyme; gu 94.3 0.079 2.7E-06 56.1 7.8 154 119-328 64-240 (343)
90 1coo_A RNA polymerase alpha su 94.3 0.039 1.3E-06 47.9 4.4 49 464-513 30-78 (98)
91 2ztd_A Holliday junction ATP-d 94.3 0.019 6.6E-07 56.8 2.8 54 460-513 91-145 (212)
92 3sgi_A DNA ligase; HET: DNA AM 94.3 0.0079 2.7E-07 68.3 0.0 84 458-546 492-584 (615)
93 1s5l_U Photosystem II 12 kDa e 94.2 0.042 1.4E-06 50.2 4.7 42 527-576 67-110 (134)
94 3arc_U Photosystem II 12 kDa e 94.2 0.034 1.2E-06 48.3 3.8 56 483-576 18-73 (97)
95 1jms_A Terminal deoxynucleotid 93.9 0.094 3.2E-06 56.4 7.5 101 443-551 38-150 (381)
96 2ihm_A POL MU, DNA polymerase 93.9 0.095 3.2E-06 55.9 7.4 100 443-550 19-130 (360)
97 3arc_U Photosystem II 12 kDa e 93.7 0.038 1.3E-06 48.0 3.3 48 457-512 26-73 (97)
98 1u9l_A Transcription elongatio 93.7 0.13 4.4E-06 41.9 6.1 52 521-575 7-59 (70)
99 2fmp_A DNA polymerase beta; nu 93.3 0.078 2.7E-06 56.0 5.5 74 499-573 34-116 (335)
100 4b21_A Probable DNA-3-methylad 93.2 0.35 1.2E-05 48.4 9.8 81 469-574 81-169 (232)
101 2ihm_A POL MU, DNA polymerase 93.2 0.094 3.2E-06 55.9 5.9 74 499-573 38-120 (360)
102 1jms_A Terminal deoxynucleotid 93.1 0.086 2.9E-06 56.7 5.5 55 519-573 76-139 (381)
103 2yg9_A DNA-3-methyladenine gly 93.0 0.25 8.5E-06 49.2 8.4 44 468-512 81-124 (225)
104 1b22_A DNA repair protein RAD5 92.5 0.068 2.3E-06 47.8 3.1 46 530-575 32-78 (114)
105 3c65_A Uvrabc system protein C 92.0 0.028 9.7E-07 56.1 0.0 50 459-511 175-224 (226)
106 2bcq_A DNA polymerase lambda; 91.7 0.18 6.2E-06 53.2 5.8 74 499-573 34-114 (335)
107 3c1y_A DNA integrity scanning 91.7 0.16 5.5E-06 54.2 5.4 52 461-514 319-370 (377)
108 3i0w_A 8-oxoguanine-DNA-glycos 91.3 0.51 1.7E-05 48.7 8.6 71 480-577 159-234 (290)
109 2cou_A ECT2 protein; BRCT doma 91.1 0.061 2.1E-06 47.4 1.2 48 600-647 37-84 (109)
110 3l46_A Protein ECT2; alternati 91.1 0.07 2.4E-06 47.5 1.6 48 600-647 46-93 (112)
111 2i1q_A DNA repair and recombin 89.8 0.43 1.5E-05 49.3 6.5 56 458-514 4-59 (322)
112 1kea_A Possible G-T mismatches 89.4 0.8 2.7E-05 45.2 7.8 76 469-574 56-134 (221)
113 3s6i_A DNA-3-methyladenine gly 88.4 1 3.5E-05 44.8 7.8 70 480-574 85-158 (228)
114 2csb_A Topoisomerase V, TOP61; 88.0 1.1 3.8E-05 45.1 7.6 102 459-573 356-465 (519)
115 1orn_A Endonuclease III; DNA r 87.5 1.6 5.4E-05 43.3 8.5 70 470-541 55-131 (226)
116 1xdn_A RNA editing ligase MP52 87.2 0.84 2.9E-05 46.6 6.3 201 88-303 10-244 (277)
117 2zj8_A DNA helicase, putative 87.1 0.65 2.2E-05 53.5 6.2 53 458-511 647-699 (720)
118 1pzn_A RAD51, DNA repair and r 86.8 0.7 2.4E-05 48.7 5.8 54 459-513 37-90 (349)
119 2ziu_A MUS81 protein; helix-ha 86.3 0.54 1.8E-05 48.8 4.5 51 527-577 241-306 (311)
120 2zj8_A DNA helicase, putative 85.9 0.7 2.4E-05 53.2 5.7 51 526-576 649-700 (720)
121 2nrt_A Uvrabc system protein C 85.8 0.35 1.2E-05 48.0 2.6 48 459-510 170-218 (220)
122 4e9f_A Methyl-CPG-binding doma 83.4 0.73 2.5E-05 43.5 3.5 72 469-577 52-126 (161)
123 2kz3_A Putative uncharacterize 83.3 2.3 7.9E-05 35.6 6.2 53 460-513 6-59 (83)
124 1kg2_A A/G-specific adenine gl 83.2 3 0.0001 41.2 8.1 39 471-512 53-94 (225)
125 1exn_A 5'-exonuclease, 5'-nucl 83.1 0.61 2.1E-05 48.2 3.1 42 527-574 207-248 (290)
126 2abk_A Endonuclease III; DNA-r 82.8 1.5 5.1E-05 42.9 5.7 33 480-512 59-94 (211)
127 3bqs_A Uncharacterized protein 82.7 2.8 9.6E-05 35.9 6.6 30 458-488 5-34 (93)
128 3n5n_X A/G-specific adenine DN 81.8 3.5 0.00012 42.4 8.2 38 471-511 72-112 (287)
129 3lda_A DNA repair protein RAD5 81.6 1.7 5.7E-05 46.9 6.0 54 459-513 85-138 (400)
130 3im1_A Protein SNU246, PRE-mRN 80.7 2.8 9.5E-05 43.7 7.2 64 448-513 149-212 (328)
131 2ebw_A DNA repair protein REV1 80.1 1.3 4.3E-05 37.5 3.6 46 600-647 37-83 (97)
132 3fhg_A Mjogg, N-glycosylase/DN 79.1 2 7E-05 41.9 5.2 21 554-574 116-136 (207)
133 2va8_A SSO2462, SKI2-type heli 78.7 1.4 4.7E-05 50.6 4.5 50 459-512 659-708 (715)
134 3j20_Y 30S ribosomal protein S 78.7 1.1 3.6E-05 34.0 2.3 25 414-438 18-42 (50)
135 2i5h_A Hypothetical protein AF 78.1 2.1 7.1E-05 41.7 4.7 27 487-513 128-154 (205)
136 2jhn_A ALKA, 3-methyladenine D 78.1 3 0.0001 42.9 6.4 61 480-541 162-228 (295)
137 2va8_A SSO2462, SKI2-type heli 77.8 1.2 4.2E-05 51.0 3.7 51 522-575 656-707 (715)
138 3n0u_A Probable N-glycosylase/ 77.3 2.9 9.9E-05 41.3 5.7 57 520-577 88-152 (219)
139 2i5h_A Hypothetical protein AF 77.1 2 6.7E-05 41.9 4.2 41 527-575 136-185 (205)
140 4dez_A POL IV 1, DNA polymeras 77.0 2 7E-05 45.2 4.8 49 459-510 180-228 (356)
141 3q8k_A Flap endonuclease 1; he 77.0 1.2 4.2E-05 46.9 3.1 26 527-552 236-261 (341)
142 3fsp_A A/G-specific adenine gl 76.9 5.1 0.00018 42.4 7.9 71 471-544 62-140 (369)
143 1l0b_A BRCA1; TANDEM-BRCT, thr 76.4 4.6 0.00016 39.3 6.9 48 600-647 29-82 (229)
144 3sei_A Caskin-1; SAM domain, p 76.4 3.9 0.00013 37.9 6.0 90 468-564 24-123 (149)
145 2p6r_A Afuhel308 helicase; pro 75.3 1.6 5.4E-05 50.1 3.6 50 459-512 634-683 (702)
146 3im1_A Protein SNU246, PRE-mRN 75.3 3 0.0001 43.4 5.5 51 526-576 160-211 (328)
147 3fhf_A Mjogg, N-glycosylase/DN 75.1 4.3 0.00015 40.0 6.2 22 554-575 123-145 (214)
148 1t15_A Breast cancer type 1 su 74.3 4.5 0.00015 38.7 6.1 48 600-647 26-79 (214)
149 2c5u_A RNA ligase, T4 RNA liga 74.0 1.4 4.8E-05 47.1 2.5 165 83-302 65-235 (375)
150 2nte_A BARD-1, BRCA1-associate 74.0 6.5 0.00022 37.8 7.2 48 600-647 24-74 (210)
151 1rxw_A Flap structure-specific 73.9 1.6 5.3E-05 45.9 2.9 26 527-552 239-264 (336)
152 2xhi_A N-glycosylase/DNA lyase 73.5 5.2 0.00018 42.4 6.9 21 554-574 252-272 (360)
153 1mpg_A ALKA, 3-methyladenine D 73.2 5.6 0.00019 40.5 6.8 65 480-545 156-230 (282)
154 3mab_A Uncharacterized protein 72.7 6.7 0.00023 33.5 6.0 31 458-489 5-35 (93)
155 4e9f_A Methyl-CPG-binding doma 71.5 4.9 0.00017 37.7 5.4 15 527-541 108-122 (161)
156 3osn_A DNA polymerase IOTA; ho 71.0 3 0.0001 45.1 4.4 47 460-509 237-283 (420)
157 1jx4_A DNA polymerase IV (fami 70.6 3.3 0.00011 43.5 4.4 50 459-511 180-229 (352)
158 2zix_A Crossover junction endo 70.1 0.75 2.6E-05 47.7 -0.6 51 527-577 237-302 (307)
159 2i1q_A DNA repair and recombin 69.4 7 0.00024 40.0 6.6 48 527-574 7-55 (322)
160 2js4_A UPF0434 protein BB2007; 68.8 2.8 9.5E-05 34.0 2.6 22 417-438 10-31 (70)
161 2izo_A FEN1, flap structure-sp 68.6 2 6.9E-05 45.2 2.3 26 527-552 238-263 (346)
162 3bq0_A POL IV, DBH, DNA polyme 68.3 3.3 0.00011 43.5 3.9 50 459-511 181-230 (354)
163 2hf1_A Tetraacyldisaccharide-1 67.6 3.1 0.0001 33.6 2.6 22 417-438 10-31 (68)
164 1pft_A TFIIB, PFTFIIBN; N-term 67.3 3.4 0.00012 30.8 2.7 22 417-438 7-29 (50)
165 2pk7_A Uncharacterized protein 67.2 3 0.0001 33.7 2.5 22 417-438 10-31 (69)
166 2z43_A DNA repair and recombin 67.0 1.2 4E-05 46.3 0.0 53 460-513 15-67 (324)
167 3ory_A Flap endonuclease 1; hy 67.0 1.4 4.8E-05 46.9 0.6 26 527-552 255-280 (363)
168 2kiv_A Ankyrin repeat and ster 66.9 11 0.00037 34.6 6.7 92 469-565 29-134 (148)
169 2jr6_A UPF0434 protein NMA0874 66.3 3.2 0.00011 33.4 2.5 22 417-438 10-31 (68)
170 3gqc_A DNA repair protein REV1 66.1 4.6 0.00016 44.8 4.6 48 459-509 317-364 (504)
171 3sqd_A PAX-interacting protein 65.9 5.9 0.0002 38.9 4.9 47 600-647 38-85 (219)
172 3pjy_A Hypothetical signal pep 65.7 6.8 0.00023 35.8 4.9 88 299-387 24-126 (136)
173 3pc6_A DNA repair protein XRCC 65.1 9 0.00031 33.3 5.4 49 600-648 33-83 (104)
174 4f4y_A POL IV, DNA polymerase 65.0 3.1 0.00011 44.0 2.9 49 459-510 181-229 (362)
175 1ul1_X Flap endonuclease-1; pr 65.0 3.8 0.00013 43.7 3.5 26 527-552 236-261 (379)
176 2q0z_X Protein Pro2281; SEC63, 64.6 8.2 0.00028 40.3 6.0 61 448-510 153-213 (339)
177 3lu0_A DNA-directed RNA polyme 63.4 1.5 5.1E-05 46.1 0.0 48 465-513 262-309 (329)
178 2etx_A Mediator of DNA damage 63.0 6.4 0.00022 38.0 4.5 47 600-647 31-78 (209)
179 4f92_B U5 small nuclear ribonu 62.9 11 0.00038 47.9 7.7 55 458-513 1558-1612(1724)
180 2kpi_A Uncharacterized protein 62.9 4.3 0.00015 31.4 2.5 23 417-443 12-34 (56)
181 1z3e_B DNA-directed RNA polyme 62.7 15 0.00052 29.8 5.9 34 542-575 28-61 (73)
182 2jny_A Uncharacterized BCR; st 62.6 4.4 0.00015 32.6 2.6 22 417-438 12-33 (67)
183 1b43_A Protein (FEN-1); nuclea 62.5 3 0.0001 43.8 2.1 25 527-551 241-265 (340)
184 1kzy_C Tumor suppressor P53-bi 61.2 10 0.00034 38.2 5.7 48 600-647 69-123 (259)
185 3k4g_A DNA-directed RNA polyme 60.8 17 0.00058 30.6 6.1 52 521-575 12-64 (86)
186 3qe9_Y Exonuclease 1; exonucle 60.3 11 0.00038 39.8 6.0 26 527-552 229-256 (352)
187 3psf_A Transcription elongatio 60.0 9.3 0.00032 46.0 5.9 48 527-576 721-769 (1030)
188 4ecq_A DNA polymerase ETA; tra 59.4 4.2 0.00015 44.1 2.7 49 459-509 255-303 (435)
189 1pzn_A RAD51, DNA repair and r 59.4 7.7 0.00026 40.6 4.6 48 527-574 39-87 (349)
190 2aq4_A DNA repair protein REV1 57.7 5.1 0.00018 43.4 3.0 48 459-509 243-293 (434)
191 1ltl_A DNA replication initiat 57.0 6.5 0.00022 40.0 3.5 44 381-424 110-165 (279)
192 3m7a_A Uncharacterized protein 56.6 12 0.00041 34.4 4.8 87 299-386 38-139 (140)
193 2a6h_A DNA-directed RNA polyme 56.5 2.3 7.9E-05 44.4 0.0 47 465-512 261-307 (315)
194 2k4x_A 30S ribosomal protein S 56.1 5.1 0.00018 30.8 1.9 24 415-438 18-41 (55)
195 3gfk_B DNA-directed RNA polyme 56.0 15 0.00053 30.3 4.9 53 520-575 15-68 (79)
196 2vl6_A SSO MCM N-TER, minichro 55.7 5.6 0.00019 40.2 2.7 43 381-423 117-176 (268)
197 3psi_A Transcription elongatio 55.4 13 0.00044 45.6 6.1 49 527-576 718-766 (1219)
198 2akl_A PHNA-like protein PA012 55.3 6.6 0.00022 35.5 2.7 23 414-438 27-49 (138)
199 3ii6_X DNA ligase 4; XRCC4, NH 54.9 12 0.0004 37.7 4.9 48 600-648 36-84 (263)
200 4esj_A Type-2 restriction enzy 54.8 5.4 0.00019 39.7 2.3 28 416-447 35-66 (257)
201 3n0u_A Probable N-glycosylase/ 51.6 15 0.0005 36.2 4.9 75 467-545 65-152 (219)
202 3l41_A BRCT-containing protein 51.5 14 0.00046 36.3 4.6 48 599-647 26-74 (220)
203 2jhn_A ALKA, 3-methyladenine D 51.0 12 0.00041 38.3 4.4 43 531-574 180-229 (295)
204 1a76_A Flap endonuclease-1 pro 51.0 8.9 0.0003 39.8 3.4 23 527-550 229-251 (326)
205 1t94_A Polymerase (DNA directe 50.8 9.3 0.00032 41.6 3.7 47 459-509 284-330 (459)
206 3vdp_A Recombination protein R 49.6 8 0.00027 37.9 2.5 21 491-511 26-46 (212)
207 1wf6_A Similar to S.pombe -RAD 49.5 20 0.00067 32.0 5.0 47 600-647 65-114 (132)
208 4f92_B U5 small nuclear ribonu 48.8 19 0.00066 45.8 6.5 51 526-576 1560-1611(1724)
209 3e1s_A Exodeoxyribonuclease V, 48.8 3.4 0.00012 46.5 -0.3 66 579-646 6-78 (574)
210 1v5w_A DMC1, meiotic recombina 48.8 3.7 0.00012 42.9 0.0 52 460-512 30-81 (343)
211 2kz3_A Putative uncharacterize 48.7 23 0.00079 29.5 4.9 49 527-575 7-57 (83)
212 2q0z_X Protein Pro2281; SEC63, 47.5 20 0.00069 37.2 5.5 52 526-577 164-216 (339)
213 1dl6_A Transcription factor II 47.4 14 0.00046 28.7 3.1 27 412-438 8-35 (58)
214 1vq8_Z 50S ribosomal protein L 47.0 7.8 0.00027 32.4 1.8 24 415-438 27-50 (83)
215 3oq4_A DBF4, protein DNA52; DD 46.8 31 0.0011 31.3 5.8 48 600-647 41-96 (134)
216 2kp7_A Crossover junction endo 46.5 14 0.00049 31.0 3.4 24 553-576 56-79 (87)
217 3bzc_A TEX; helix-turn-helix, 45.5 11 0.00036 44.1 3.2 56 484-542 501-557 (785)
218 3m7n_A Putative uncharacterize 45.4 15 0.00051 34.8 3.7 60 378-451 111-170 (179)
219 3bzc_A TEX; helix-turn-helix, 44.8 11 0.00037 44.0 3.1 103 461-575 512-626 (785)
220 3pzp_A DNA polymerase kappa; D 44.7 15 0.00051 40.8 4.1 46 459-508 340-385 (517)
221 1l8d_A DNA double-strand break 44.1 6.1 0.00021 34.3 0.7 12 415-426 47-58 (112)
222 1vk6_A NADH pyrophosphatase; 1 44.1 11 0.00036 38.3 2.6 25 414-438 106-130 (269)
223 3u3z_A Microcephalin; DNA repa 44.0 24 0.00081 33.8 5.0 48 600-647 33-82 (199)
224 1vdd_A Recombination protein R 44.0 9.8 0.00034 37.6 2.2 21 491-511 12-32 (228)
225 4dez_A POL IV 1, DNA polymeras 42.4 39 0.0013 35.2 6.7 76 498-575 143-229 (356)
226 2hc8_A PACS, cation-transporti 41.8 11 0.00036 33.1 1.9 27 374-402 25-51 (113)
227 2fhd_A RAD9 homolog, DNA repai 40.8 3.9 0.00013 37.8 -1.1 40 356-402 44-83 (153)
228 1exn_A 5'-exonuclease, 5'-nucl 40.8 19 0.00065 37.0 3.9 46 459-513 205-251 (290)
229 2p6r_A Afuhel308 helicase; pro 40.2 18 0.00061 41.2 4.0 51 523-576 632-683 (702)
230 1lko_A Rubrerythrin all-iron(I 40.1 9 0.00031 36.8 1.3 11 414-424 170-180 (191)
231 3u6p_A Formamidopyrimidine-DNA 39.5 14 0.00049 37.5 2.7 22 417-438 247-270 (273)
232 1coo_A RNA polymerase alpha su 38.9 27 0.00093 30.0 3.9 34 542-575 43-76 (98)
233 3lda_A DNA repair protein RAD5 38.5 38 0.0013 36.2 6.0 50 525-574 85-135 (400)
234 3pwf_A Rubrerythrin; non heme 38.0 11 0.00037 35.6 1.5 11 414-424 152-162 (170)
235 1im4_A DBH; DNA polymerase PAL 37.8 13 0.00046 36.3 2.1 35 459-494 186-220 (221)
236 3s6i_A DNA-3-methyladenine gly 37.7 37 0.0013 33.3 5.4 33 476-508 120-156 (228)
237 1k82_A Formamidopyrimidine-DNA 37.6 16 0.00054 37.0 2.7 22 417-438 242-265 (268)
238 2xzf_A Formamidopyrimidine-DNA 37.5 16 0.00055 37.0 2.7 22 417-438 244-267 (271)
239 3h0g_I DNA-directed RNA polyme 37.4 13 0.00045 32.6 1.8 28 415-446 4-35 (113)
240 1k3x_A Endonuclease VIII; hydr 37.2 16 0.00056 36.8 2.7 22 417-438 236-259 (262)
241 2jne_A Hypothetical protein YF 36.6 19 0.00063 31.0 2.5 22 417-438 63-86 (101)
242 3f9v_A Minichromosome maintena 36.5 18 0.00062 40.7 3.2 39 386-424 120-171 (595)
243 1ee8_A MUTM (FPG) protein; bet 36.0 17 0.00057 36.9 2.5 22 417-438 237-260 (266)
244 1vdd_A Recombination protein R 36.0 19 0.00066 35.6 2.9 24 520-543 8-32 (228)
245 2lcq_A Putative toxin VAPC6; P 35.8 12 0.00041 34.8 1.3 13 416-428 149-161 (165)
246 3fhf_A Mjogg, N-glycosylase/DN 35.1 42 0.0014 32.8 5.2 62 483-544 71-146 (214)
247 4b21_A Probable DNA-3-methylad 34.8 48 0.0016 32.7 5.6 45 464-508 113-167 (232)
248 1kzy_C Tumor suppressor P53-bi 34.7 41 0.0014 33.6 5.2 38 611-648 202-240 (259)
249 3al2_A DNA topoisomerase 2-bin 34.4 48 0.0017 32.6 5.6 48 600-647 31-81 (235)
250 1twf_I B12.6, DNA-directed RNA 34.4 19 0.00065 32.1 2.3 30 414-447 3-36 (122)
251 3um3_B Charged multivesicular 34.2 1.1E+02 0.0038 26.5 7.1 52 7-58 1-54 (104)
252 4g9p_A 4-hydroxy-3-methylbut-2 34.0 13 0.00046 39.8 1.5 15 380-394 254-268 (406)
253 3vdp_A Recombination protein R 33.3 46 0.0016 32.6 5.0 22 554-575 25-46 (212)
254 3gqc_A DNA repair protein REV1 33.2 66 0.0022 35.5 7.0 76 498-575 280-366 (504)
255 2ziu_B Crossover junction endo 32.7 76 0.0026 33.1 7.1 51 527-577 259-330 (341)
256 2kdx_A HYPA, hydrogenase/ureas 31.7 16 0.00054 32.3 1.3 50 372-428 51-103 (119)
257 2hu9_A MERP, mercuric transpor 31.3 21 0.00072 32.3 2.1 32 417-456 3-50 (130)
258 3qt1_I DNA-directed RNA polyme 28.2 16 0.00056 33.1 0.9 29 414-446 23-55 (133)
259 3u50_C Telomerase-associated p 28.1 27 0.00091 33.1 2.3 54 371-438 11-64 (172)
260 1ci4_A Protein (barrier-TO-aut 28.0 38 0.0013 28.6 2.9 30 450-479 6-40 (89)
261 3oq0_A DBF4, protein DNA52; DD 28.0 88 0.003 28.9 5.7 49 600-648 58-114 (151)
262 2kij_A Copper-transporting ATP 27.9 22 0.00076 31.5 1.7 26 375-402 38-63 (124)
263 2gmg_A Hypothetical protein PF 27.9 23 0.00079 30.8 1.7 15 412-426 81-95 (105)
264 3a43_A HYPD, hydrogenase nicke 27.8 21 0.00071 32.5 1.5 13 415-427 107-119 (139)
265 4ecq_A DNA polymerase ETA; tra 27.4 40 0.0014 36.3 3.9 53 520-574 247-304 (435)
266 2jrp_A Putative cytoplasmic pr 27.4 23 0.00079 29.4 1.5 23 416-438 32-56 (81)
267 2k5c_A Uncharacterized protein 26.9 13 0.00043 30.9 -0.2 13 416-428 9-21 (95)
268 2z43_A DNA repair and recombin 26.4 14 0.00047 38.0 0.0 49 527-575 16-65 (324)
269 2k50_A Replication factor A re 26.0 1E+02 0.0036 26.2 5.7 46 342-389 36-81 (115)
270 3r8n_M 30S ribosomal protein S 25.8 98 0.0033 27.2 5.4 24 521-544 13-37 (114)
271 2y9u_A Tumor protein 63; apopt 25.8 82 0.0028 25.1 4.5 43 471-515 21-63 (69)
272 3cng_A Nudix hydrolase; struct 25.7 38 0.0013 31.5 3.0 24 415-438 3-30 (189)
273 1k81_A EIF-2-beta, probable tr 25.6 49 0.0017 23.0 2.7 22 417-438 2-26 (36)
274 2qkq_A Ephrin type-B receptor 25.4 64 0.0022 26.3 4.0 46 469-516 30-76 (83)
275 3osn_A DNA polymerase IOTA; ho 25.3 75 0.0026 34.1 5.6 52 521-574 228-284 (420)
276 2xzm_M RPS18E; ribosome, trans 25.2 47 0.0016 30.9 3.3 24 521-544 27-51 (155)
277 1yfu_A 3-hydroxyanthranilate-3 24.9 31 0.0011 32.7 2.1 67 378-456 80-155 (174)
278 2vxb_A DNA repair protein RHP9 24.7 56 0.0019 32.2 4.1 35 614-648 70-105 (241)
279 2f3n_A SH3 and multiple ankyri 24.4 74 0.0025 25.4 4.1 49 464-516 18-67 (76)
280 1bgx_T TAQ DNA polymerase; DNA 24.1 6.1 0.00021 46.5 -3.6 26 527-552 195-220 (832)
281 1yfb_A Transition state regula 23.9 47 0.0016 25.7 2.6 22 372-393 29-50 (59)
282 3k1f_M Transcription initiatio 23.4 47 0.0016 31.6 3.0 25 414-438 20-47 (197)
283 1zvf_A 3-hydroxyanthranilate 3 23.3 54 0.0018 31.1 3.4 67 378-456 83-157 (176)
284 3qbz_A DDK kinase regulatory s 23.3 1.9E+02 0.0066 26.9 7.0 54 600-653 96-157 (160)
285 1ucv_A Ephrin type-A receptor 23.3 76 0.0026 25.8 4.0 44 470-515 23-67 (81)
286 2l66_A SSO7C4, transcriptional 23.2 70 0.0024 23.8 3.4 22 371-392 18-39 (53)
287 1zfo_A LAsp-1; LIM domain, zin 23.0 32 0.0011 22.9 1.3 13 414-426 2-14 (31)
288 1ok0_A Tendamistat, alpha-amyl 23.0 32 0.0011 27.7 1.5 32 122-153 24-63 (74)
289 1v38_A SAM-domain protein sams 22.7 1E+02 0.0036 24.8 4.7 47 468-516 26-73 (78)
290 3maj_A DNA processing chain A; 22.6 1E+02 0.0036 32.7 5.9 33 521-553 24-56 (382)
291 3w0f_A Endonuclease 8-like 3; 22.6 42 0.0014 34.4 2.7 22 417-438 253-278 (287)
292 1giy_D 50S ribosomal protein L 22.3 1E+02 0.0036 29.2 5.2 102 321-450 5-107 (178)
293 2kp7_A Crossover junction endo 22.3 60 0.002 27.1 3.2 25 518-542 53-77 (87)
294 3bq7_A Diacylglycerol kinase d 22.1 1E+02 0.0035 24.9 4.6 49 464-516 23-72 (81)
295 3j20_O 30S ribosomal protein S 22.0 64 0.0022 29.8 3.6 39 521-559 20-61 (148)
296 2jne_A Hypothetical protein YF 22.0 60 0.0021 27.8 3.1 23 414-438 31-53 (101)
297 1a76_A Flap endonuclease-1 pro 21.9 59 0.002 33.5 3.8 23 461-486 229-251 (326)
298 2lta_A De novo designed protei 27.5 19 0.00065 29.7 0.0 41 247-291 40-80 (110)
299 2vqe_M 30S ribosomal protein S 21.9 61 0.0021 29.1 3.3 39 521-559 14-55 (126)
300 1yuz_A Nigerythrin; rubrythrin 21.7 31 0.0011 33.4 1.5 11 414-424 185-195 (202)
301 2e8n_A Ephrin type-A receptor 21.6 88 0.003 25.8 4.1 45 469-515 27-72 (88)
302 2cqa_A RUVB-like 2; TIP48, TIP 21.5 3.8E+02 0.013 22.8 8.8 77 324-400 8-84 (95)
303 6rxn_A Rubredoxin; electron tr 21.5 36 0.0012 25.2 1.4 12 413-424 26-39 (46)
304 1mvf_D MAZE protein, PEMI-like 21.3 52 0.0018 26.7 2.6 23 371-393 19-41 (82)
305 2c2x_A Methylenetetrahydrofola 21.1 1.2E+02 0.0042 30.8 5.8 63 564-648 8-84 (281)
306 3mfi_A DNA polymerase ETA; DNA 21.1 26 0.00087 39.0 0.8 38 459-496 309-352 (520)
307 3bq0_A POL IV, DBH, DNA polyme 21.0 67 0.0023 33.3 4.0 55 519-575 172-230 (354)
308 1jx4_A DNA polymerase IV (fami 20.4 69 0.0024 33.2 4.0 71 502-574 148-228 (352)
309 2k4p_A Phosphatidylinositol-3, 20.3 1E+02 0.0034 25.6 4.2 44 469-514 41-85 (86)
310 1mpg_A ALKA, 3-methyladenine D 20.2 51 0.0018 33.3 2.8 21 554-574 206-226 (282)
No 1
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=100.00 E-value=6.2e-186 Score=1572.56 Aligned_cols=633 Identities=42% Similarity=0.706 Sum_probs=559.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCccccCcccCCCCcceeccccccCC
Q psy11423 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMSL 92 (655)
Q Consensus 13 ~~~~~~~~L~~~l~~~~~~Yy~~~~p~isD~~YD~L~~~L~~le~~~p~~~~~~spt~~Vg~~~~~~~~kv~H~~pMlSL 92 (655)
++++++++|+++|++||++||++|+|+|||++||+|+++|++||++||++.++|||||+||+.+.++|.+|+|++|||||
T Consensus 3 ~~~~~~~~L~~~l~~~~~~YY~~d~p~isD~eYD~L~~eL~~lE~~~P~l~~~dSPtqrVG~~~~~~f~kv~H~~pMlSL 82 (671)
T 2owo_A 3 SIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAPLAAFSQIRHEVPMLSL 82 (671)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCSSBCCTHHHHHHHHHHHHHHHCTTSCCTTSGGGCCSCCCCBCCCEEECSSCCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCccccCCCCcccccCcccccCCCceECCCcCcCc
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhccCCCceEEEEEecceeEEEEEEeCCEEeEEEecCCCCccchhhhhhhhcccCCcccccC
Q psy11423 93 DNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIK 172 (655)
Q Consensus 93 ~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~l~~~ 172 (655)
+|+||.+||.+|++|+.+.++...++.|+|||||||+||+|+|+||+|++|+|||||.+|||||+|+++|++||++|++.
T Consensus 83 ~n~~~~~el~~f~~rv~~~l~~~~~~~~~~e~KiDGlaisL~Ye~G~Lv~a~TRGDG~~GEdvT~n~rtI~~IP~~l~~~ 162 (671)
T 2owo_A 83 DNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGE 162 (671)
T ss_dssp EEECSHHHHHHHHHHHHHHSSSCCCCCEEEEEEESSEEEEEEEETTEEEEEECCTTSSEEEBCHHHHHTCTTSCSBCCSS
T ss_pred cccCCHHHHHHHHHHHHHhcCCCcCceEEEEEecceEEEEEEEeCCEEEEEEecCCCcchhhHHHHHhhhcCCCccccCC
Confidence 99999999999999999887521236899999999999999999999999999999999999999999999999999752
Q ss_pred CCCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecccccC-CCCCCCHHH
Q psy11423 173 YPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRG-MNMPSSHSE 251 (655)
Q Consensus 173 ~~p~~~evRGEv~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~-~~~~~~~~e 251 (655)
+.|..+||||||||++++|+++|++|.+.|+++|+||||+|||+|||+||++++.|+|+||+|+|...++ .. +.+|++
T Consensus 163 ~~p~~levRGEv~m~~~~F~~lN~~~~~~g~~~faNpRNaaAGsLrqld~~~~a~R~L~~~~y~~~~~~~~~~-~~t~~e 241 (671)
T 2owo_A 163 NIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGEL-PDTHLG 241 (671)
T ss_dssp SCCSEEEEEEEEECCHHHHHHHHHHHHHSSCCCCSCHHHHHHHHHTCSCHHHHHTSCCEEEEEEEEEEESSCC-CSBHHH
T ss_pred CCCCeEEEEEEEEEEHHHHHHHHHHHHhcCCCcccChHHHHHHHHHhcChhhHhcCCCEEEEEECcccCCCCC-CCCHHH
Confidence 2588999999999999999999999999999999999999999999999999999999999999973222 22 489999
Q ss_pred HHHHHHhCCCCCCCCceeeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCcceee
Q psy11423 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEAL 331 (655)
Q Consensus 252 ~l~~L~~~GF~~~~~~~~~~~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~~~~ 331 (655)
.|++|++|||+|+++...|.+++++++|+++|.+.|..+||+|||+||||||+++|+.||+|+|+||||||||||+++++
T Consensus 242 ~l~~L~~~Gf~v~~~~~~~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~~~~~q~~LG~t~k~PrWAiA~Kfpae~~~ 321 (671)
T 2owo_A 242 RLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQEQM 321 (671)
T ss_dssp HHHHHHHHTCCCCTTCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEECCCCEEE
T ss_pred HHHHHHHCCCCCCCcceeeCCHHHHHHHHHHHHHHHhcCCCCCccEEEEecCHHHHHHhCcccCCCCceEEEcCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeecCcceeeeEEEEEEEEECCEEEEEeeCCCHHHHHhcCCCCCCEEEEEecCcccceeecccccCCCCCCcc
Q psy11423 332 TKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKI 411 (655)
Q Consensus 332 T~v~~I~~qvGRTG~itPvA~lePV~l~G~tVsratLhN~~~i~~~~i~iGd~V~v~raGdVIP~I~~vv~~~r~~~~~~ 411 (655)
|+|++|+|||||||+|||||+|+||.|+|+|||||||||+++|+++||++||+|.|+|||||||+|++|+.++|++.+++
T Consensus 322 T~l~~I~~qVGRTG~iTPvA~lePV~l~G~tVsrATLHN~d~i~~~di~iGD~V~V~rAGdvIP~i~~vv~~~r~~~~~~ 401 (671)
T 2owo_A 322 TFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTRE 401 (671)
T ss_dssp EEEEEEEEEECTTSBEEEEEEEEEEEETTEEEEEEECCSHHHHHHHTCCBTCEEEEEEETTTEEEEEEECGGGCCSSCBC
T ss_pred EEEEEEEEecCCCceeeeEEEEEeEEECCEEEEeccCCCHHHHHHcCCCCCCEEEEEECCCcccceeccccccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCcceeecCceeEEecCCCcCCHHHHHhhccccccccccccCCCCHHHHHHHHHcCCCCChHHHhcCChh
Q psy11423 412 FKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491 (655)
Q Consensus 412 ~~~P~~CP~C~~~l~~~~~~~~~~C~n~~~~C~~q~~~~i~~F~sk~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~ 491 (655)
|.+|++||+||++|++.+|++.+||+|.+. ||+|++++|.||+||++|||+|||+|+|.+|+++|+|++++|||.|+.+
T Consensus 402 ~~~P~~CP~Cgs~l~~~~~~~~~rC~n~~~-Cpaq~~~~l~hf~sr~aldI~GLG~k~i~~L~~~g~I~~~aDL~~L~~~ 480 (671)
T 2owo_A 402 VVFPTHCPVCGSDVERVEGEAVARCTGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG 480 (671)
T ss_dssp CCCCSBCTTTCCBEEECTTCSCEEECCGGG-CHHHHHHHHHHHHSTTTTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCHH
T ss_pred CcCCCCCCCCCCEeEEecCCEEEECCCCCC-CHHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHcCCCCCHHHHHhhCHH
Confidence 999999999999999988999999998656 9999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCcHHHHHHHHHHHHHhcccchhHHHHHhCCCCccHHHHHHHHHhCCCHHHHHhcCHHHHhcCCCCCHHHHHHH
Q psy11423 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAF 571 (655)
Q Consensus 492 ~L~~l~GfG~Ksa~nll~~I~~sk~~~l~r~L~algIpgIG~~~Ak~L~~~fgsl~~l~~as~eeL~~i~GIG~~~A~~I 571 (655)
+|..|+|||+|+++||+++|+.+|+.+|+|||+||||||||+++|+.|+++|+|+++|..|+.++|.+++|||+++|++|
T Consensus 481 ~L~~l~gfG~Ksa~nLl~aIe~sk~~~l~R~L~algi~~VG~~~Ak~La~~Fgsl~~l~~As~eeL~~i~GIG~~~A~sI 560 (671)
T 2owo_A 481 KLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHV 560 (671)
T ss_dssp HHHTSTTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHCSHHHHHTCCHHHHTTSTTCCHHHHHHH
T ss_pred HhhcccccchhHHHHHHHHHHHHhcCChhheehhhcccCccHHHHHHHHHHcCCHHHHHhCCHHHHhhcCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcChhHHHHHHHHHHcCcccc--cC------C--------------------------CCCCCeEecccccCccEEE
Q psy11423 572 IKFINQPLHRLLISQLRDVGIYWL--NN------P--------------------------NTKGGKVVNFISKNTNYLV 617 (655)
Q Consensus 572 ~~~f~~~~n~~li~~L~~~Gi~~~--~~------~--------------------------~~~G~~v~~sVsk~t~ylv 617 (655)
++||++++|+++|++|.+.|+.+. .. . .++||+|++|||++|||||
T Consensus 561 ~~ff~~~~~~~~i~~L~~~gv~~~~~~~~~~~~~~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV 640 (671)
T 2owo_A 561 HNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVI 640 (671)
T ss_dssp HHHHTCHHHHHHHHHHHHHTCBCCCC------------------------------------------------------
T ss_pred HHHHHhHHHHHHHHHHHHcCCcccccccccccccCCcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCcccCceeEEE
Confidence 999999999999999999898543 10 0 1889999999999999999
Q ss_pred ecCCCCchHHHHHHcCCeeeCHHHHHHHHh
Q psy11423 618 KGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647 (655)
Q Consensus 618 ~g~~~g~K~~kA~~lgi~ii~e~~f~~~l~ 647 (655)
+|+++|||++||++|||+||+|++|++||+
T Consensus 641 ~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 641 AGEAAGSKLAKAQELGIEVIDEAEMLRLLG 670 (671)
T ss_dssp ------------------------------
T ss_pred ECCCCChHHHHHHHCCCcEEcHHHHHHHhc
Confidence 999999999999999999999999999984
No 2
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=100.00 E-value=1.4e-180 Score=1527.68 Aligned_cols=627 Identities=39% Similarity=0.662 Sum_probs=551.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCccccCcccCCC-Ccceecccccc
Q psy11423 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGEN-SKYVHHTFKMM 90 (655)
Q Consensus 12 ~~~~~~~~~L~~~l~~~~~~Yy~~~~p~isD~~YD~L~~~L~~le~~~p~~~~~~spt~~Vg~~~~~~-~~kv~H~~pMl 90 (655)
+.+++++++|+++|++||++||++|+|+|||++||+|+++|++||++||++.++|||||+||+.+.++ |.+|+|.+|||
T Consensus 4 ~~~~~~~~~L~~~l~~~~~~YY~~d~p~isD~eYD~l~~eL~~lE~~~P~l~~~dSpt~rVG~~~~~~~f~~v~H~~pMl 83 (667)
T 1dgs_A 4 EEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFKSPDSPTEQVGARPLEPTFRPVRHPTRMY 83 (667)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCSCSSSSHHHHHHHHHHTTSSGGGCCTTSGGGGCSSSCCCCCCCEEECSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCccccCCCCCccccCCccccCCccceECCCcCc
Confidence 45678999999999999999999999999999999999999999999999999999999999999888 99999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhhccCCCceEEEEEecceeEEEEEEeCCEEeEEEecCCCCccchhhhhhhhcccCCcccc
Q psy11423 91 SLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLN 170 (655)
Q Consensus 91 SL~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~l~ 170 (655)
||+|+||.+||.+|++|+.+.++ +++.|+|||||||+|| |+|+||+ +|+|||||.+|||||+|+++|++||++|+
T Consensus 84 SL~n~~~~~el~~f~~rv~~~~~--~~~~~~~e~KiDGlai-L~Ye~G~--~a~TRGDG~~GedvT~n~rtI~~iP~~l~ 158 (667)
T 1dgs_A 84 SLDNAFTYEEVLAFEERLEREAE--APSLYTVEHKVDGLSV-LYYEEGV--WSTGSGDGEVGEEVTQNLLTIPTIPRRLK 158 (667)
T ss_dssp CCCEECSHHHHHHHHHHTTSSSC--SCCEEEEEECCSCEEE-EEEETTE--EEEEECSSSEEEBCTGGGTSSTTSCSBCS
T ss_pred CccccCCHHHHHHHHHHHHHhcC--CCceEEEEEccceeEE-EEEcCCC--EEEeeCCCcchhhHHHHHhhhcCCCcccC
Confidence 99999999999999999988775 2478999999999999 9999999 99999999999999999999999999997
Q ss_pred cCCCCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccce--EEEEEeccc-ccCCCCCC
Q psy11423 171 IKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKIL--HFFAHGVGE-LRGMNMPS 247 (655)
Q Consensus 171 ~~~~p~~~evRGEv~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L--~f~~y~~~~-~~~~~~~~ 247 (655)
+. |..+||||||||++++|+++|++|.+.|+++|+||||+|||+|||+||++++.|+| +||+|+|.. .++.. +.
T Consensus 159 ~~--p~~levRGEv~m~~~~F~~lN~~~~~~g~~~faNpRNaaAGsLrqld~~~~a~r~L~~~~~~y~~~~~~~~~~-~~ 235 (667)
T 1dgs_A 159 GV--PDRLEVRGEVYMPIEAFLRLNEELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLGLEESG-LK 235 (667)
T ss_dssp SC--CSEEEEEEEEECCHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHSCSSHHHHHHSCCEEECCCBCTTTTTTSCC-CC
T ss_pred CC--CCeEEEEEEEEEEHHHHHHHHHHHHhcCCCcccChHHHHHHHHHhcChhhhhhCCCCCEEEEEEeeccCCCCC-CC
Confidence 52 88999999999999999999999999999999999999999999999999999999 999999931 12222 58
Q ss_pred CHHHHHHHHHhCCCCCCCCceeeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCc
Q psy11423 248 SHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLS 327 (655)
Q Consensus 248 ~~~e~l~~L~~~GF~~~~~~~~~~~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~ 327 (655)
+|++.|++|++|||+|+++...|.+++++++|+++|.+.|..+||+|||+||||||+.+|+.||+|+|+||||||||||+
T Consensus 236 t~~e~l~~L~~~Gf~v~~~~~~~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~~~~~q~~LG~t~k~PrWAiA~Kfpa 315 (667)
T 1dgs_A 236 SQYELLLWLKEKGFPVEHCYEKALGAEGVEEVYRRGLAQRHALPFEADGVVLKLDDLTLWGELGYTARAPRFALAYKFPA 315 (667)
T ss_dssp BHHHHHHHHHHTTCCCCSCEEEEEHHHHHHHHHHHHHHTTTTSSSCCCEEEEEESBTHHHHHSCBCSSCBSSEEEEECCC
T ss_pred CHHHHHHHHHHCCCCCCccceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEecCHHHHHHhCcccCCCCceEEecCCC
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEEEEEEeecCcceeeeEEEEEEEEECCEEEEEeeCCCHHHHHhcCCCCCCEEEEEecCcccceeecccccCCCC
Q psy11423 328 KEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPN 407 (655)
Q Consensus 328 ~~~~T~v~~I~~qvGRTG~itPvA~lePV~l~G~tVsratLhN~~~i~~~~i~iGd~V~v~raGdVIP~I~~vv~~~r~~ 407 (655)
++++|+|++|+|||||||+|||||+|+||.|+|+|||||||||+++|+++||++||+|.|+|||||||+|++|+.++|++
T Consensus 316 e~~~T~l~~I~~qVGRTG~iTPvA~lePV~l~G~tVsrAtLhN~d~i~~~di~iGD~V~V~rAGdvIP~i~~vv~~~R~~ 395 (667)
T 1dgs_A 316 EEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGSEVSRVTLHNESYIEELDIRIGDWVLVHKAGGVIPEVLRVLKERRTG 395 (667)
T ss_dssp CCEEEEEEEEEEEECTTSBEEEEEEEEEEEETTEEEEEEECCSHHHHHHTTCBSSCEEEEEEETTTEEEEEEECGGGCCS
T ss_pred ceEEEEEEEEEEecCCCceeeeEEEEEeEEECCEEEEEcccCCHHHHHHcCCCCCCEEEEEECCCcchhhhccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCcceeecCceeEEecCCCcCCHHHHHhhccccccccccccCCCCHHHHHHHHHcCCCCChHHHhc
Q psy11423 408 DSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYK 487 (655)
Q Consensus 408 ~~~~~~~P~~CP~C~~~l~~~~~~~~~~C~n~~~~C~~q~~~~i~~F~sk~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~ 487 (655)
++++|.+|++||+||+++ .+|++.+||+|. . ||+|++++|.||+||++|||+|||+|+|++|+++|+|++++|||.
T Consensus 396 ~~~~~~~P~~CP~Cgs~l--~~g~~~~~C~n~-~-Cpaq~~~~l~hf~sr~aldI~GLG~k~i~~L~~~g~I~~~~DL~~ 471 (667)
T 1dgs_A 396 KERPIRWPEACPECGHRL--VKEGKVHRCPNP-L-CPAKRFEAIRHYASRKAMDIEGLGEKLIERLLEKGLVRDVADLYH 471 (667)
T ss_dssp CCCBCCCCSBCTTTCCBC--EEETTEEECCCT-T-CGGGHHHHHHHHHSTTSSCCTTCCHHHHHHHHHTTSCSSGGGGGG
T ss_pred cCCcccCCCCCCCCCCCc--cCCCeEEEeCCC-C-ChhHHHHHHHHHhcccccCcCcCCHHHHHHHHHcCCCCCHHHHHh
Confidence 999999999999999999 567799999996 6 999999999999999999999999999999999999999999999
Q ss_pred CChhhhccccCCcHHHHHHHHHHHHHhcccchhHHHHHhCCCCccHHHHHHHHHhCCCHHHHHhcCHHHHhcCCCCCHHH
Q psy11423 488 INFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTT 567 (655)
Q Consensus 488 L~~~~L~~l~GfG~Ksa~nll~~I~~sk~~~l~r~L~algIpgIG~~~Ak~L~~~fgsl~~l~~as~eeL~~i~GIG~~~ 567 (655)
|+.++|..++|||+|+++||+++|+.+|+.+|+|||+||||||||+++|++|+++|+++++|..|+.++|.+++|||+++
T Consensus 472 L~~e~L~~l~g~G~Ksa~nLl~aIe~sk~~~l~R~L~alGI~~VG~~~Ak~La~~Fgsl~~l~~As~eeL~~I~GIG~~~ 551 (667)
T 1dgs_A 472 LRKEDLLGLERMGEKSAQNLLRQIEESKHRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELIEVEEVGELT 551 (667)
T ss_dssp GCCHHHHTTSSCCSTTHHHHHHHHHHGGGCCHHHHHHHTTCSSCCHHHHHHHHHTTSBHHHHTTCCHHHHHTSTTCCHHH
T ss_pred cCHHHHhcccccchhhHHHHHHHHHHHhcCcHHHhhHhhccCCccHHHHHHHHHHcCCHHHHHhCCHHHHHhccCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcChhHHHHHHHHHHcCcccc-c---C-C-----------------------CCCCCeEecccccCccEEEec
Q psy11423 568 VKAFIKFINQPLHRLLISQLRDVGIYWL-N---N-P-----------------------NTKGGKVVNFISKNTNYLVKG 619 (655)
Q Consensus 568 A~~I~~~f~~~~n~~li~~L~~~Gi~~~-~---~-~-----------------------~~~G~~v~~sVsk~t~ylv~g 619 (655)
|++|++||++++|++++++|.+.|+.+. . . . .++||+|++|||++|||||+|
T Consensus 552 A~sI~~ff~~~~~~~~i~~L~~~gv~~~~~~~~~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G 631 (667)
T 1dgs_A 552 ARAILETLKDPAFRDLVRRLKEAGVSMESKEEVSDLLSGLTFVLTGELSRPREEVKALLGRLGAKVTDSVSRKTSYLVVG 631 (667)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTTCCCBCC--------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCCccccccccccccCCCEEEEeCCCCCCHHHHHHHHHHcCCEEcCcccCCeeEEEEC
Confidence 9999999999999999999999998653 1 0 0 188999999999999999999
Q ss_pred CCCCchHHHHHHcCCeeeCHHHHHHHHhccc
Q psy11423 620 QKPGKKLEKAIKLNIKILDEKNFVKIVKGFS 650 (655)
Q Consensus 620 ~~~g~K~~kA~~lgi~ii~e~~f~~~l~~~~ 650 (655)
+++|||++||++|||+||+|++|++||+...
T Consensus 632 ~~~gsKl~KA~~lgI~Ii~E~~f~~~l~~~~ 662 (667)
T 1dgs_A 632 ENPGSKLEKARALGVAVLTEEEFWRFLKEKG 662 (667)
T ss_dssp -------------------------------
T ss_pred CCCChHHHHHHHCCCeEEeHHHHHHHHhcCC
Confidence 9999999999999999999999999997654
No 3
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=100.00 E-value=1.1e-175 Score=1471.03 Aligned_cols=585 Identities=43% Similarity=0.722 Sum_probs=561.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCccccCcccCCCCcceecccccc
Q psy11423 11 FSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMM 90 (655)
Q Consensus 11 ~~~~~~~~~~L~~~l~~~~~~Yy~~~~p~isD~~YD~L~~~L~~le~~~p~~~~~~spt~~Vg~~~~~~~~kv~H~~pMl 90 (655)
|+++++||++|+++|++||++||++|+|+|||++||+|+++|++||++||++.+++||||+||+.+.++|.||+|++|||
T Consensus 1 me~~~~~i~~L~~~i~~~~~~Yy~~~~p~IsD~eYD~L~~eL~~lE~~~p~l~~~dSPtqrVG~~~~~~f~kv~H~~pMl 80 (586)
T 4glx_A 1 MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAPLAAFSQIRHEVPML 80 (586)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHTTCSSBCCTHHHHHHHHHHHHHHHSGGGCCTTSGGGC----CCBCCCEEECSSCCC
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCccccCCCCCcccccccccCCCCcccCCCCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhhccCCCceEEEEEecceeEEEEEEeCCEEeEEEecCCCCccchhhhhhhhcccCCcccc
Q psy11423 91 SLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLN 170 (655)
Q Consensus 91 SL~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~l~ 170 (655)
||+|+||.+||.+|++|+.+.|+...++.|+|||||||+||+|+|+||+|++|+|||||.+|||||+|+++|++||++|.
T Consensus 81 SL~n~~~~~el~~~~~r~~~~l~~~~~~~~~~epKiDGlavsL~Ye~G~Lv~a~TRGDG~~GeDiT~nvrtI~~IPl~l~ 160 (586)
T 4glx_A 81 SLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLH 160 (586)
T ss_dssp CCCEECSHHHHHHHHHHHHHC-------CEEEEEEESSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTTSCSBCC
T ss_pred CccccCCHHHHHHHHHHHHHHhccCCCceEEEEEeecceEEEEEEeCCEEEEEEccCCCcccccHHHHHHhccCcccccc
Confidence 99999999999999999999886555678999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecccccCCCCCCCHH
Q psy11423 171 IKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHS 250 (655)
Q Consensus 171 ~~~~p~~~evRGEv~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~~~~~~~~~ 250 (655)
+.++|..+||||||||++++|+++|+++.+.|+++|+||||+|||+|||+||++++.|+|+||+|++...++.+++.+|+
T Consensus 161 ~~~~p~~leVRGEv~m~~~~F~~ln~~~~~~g~~~faNpRNaaAGslrqld~~~~a~r~L~f~~y~v~~~~~~~~~~t~~ 240 (586)
T 4glx_A 161 GENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL 240 (586)
T ss_dssp SSSCCSEEEEEEEEECCHHHHHHHHHHHHHTTCCCCSCHHHHHHHHHTCSCHHHHHTSCCEEEEEEEEEEESSCCCSBHH
T ss_pred cCCCCceEEEEEEEEEEhhhccccchhhhhccCccchhhHHHHhccccccchhhhhccccceeEeeeeeeecccccccHH
Confidence 76789999999999999999999999999999999999999999999999999999999999999998766656678999
Q ss_pred HHHHHHHhCCCCCCCCceeeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCccee
Q psy11423 251 ELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEA 330 (655)
Q Consensus 251 e~l~~L~~~GF~~~~~~~~~~~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~~~ 330 (655)
+.|++|++|||+|+++...+.+.+++.+|+++|...|.++||+|||||||+|++.+|+.||+|+|+||||||||||++++
T Consensus 241 e~l~~L~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~R~~l~y~iDGiVikvn~~~~~~~lG~ts~~PrwAiA~Kfp~e~~ 320 (586)
T 4glx_A 241 GRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQEQ 320 (586)
T ss_dssp HHHHHHHHTTCCCCTTCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEECCCCCEE
T ss_pred HHHHHHHHcCCCCccceeeeccHHHHHHHHHHHHHhhhcccccCCceEEEecchhhhhccCCccCCCCeeEEEcccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEeecCcceeeeEEEEEEEEECCEEEEEeeCCCHHHHHhcCCCCCCEEEEEecCcccceeecccccCCCCCCc
Q psy11423 331 LTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSK 410 (655)
Q Consensus 331 ~T~v~~I~~qvGRTG~itPvA~lePV~l~G~tVsratLhN~~~i~~~~i~iGd~V~v~raGdVIP~I~~vv~~~r~~~~~ 410 (655)
+|+|++|+|||||||+|||||+|+||.|+|+||+||||||+++|+++||++||+|.|+|||||||+|++|++++|++++.
T Consensus 321 ~T~v~~I~~qVGRTG~iTPvA~lePV~l~G~tVsraTLhN~~~I~~~di~iGD~V~V~rAGdVIP~I~~Vv~~~r~~~~~ 400 (586)
T 4glx_A 321 MTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR 400 (586)
T ss_dssp EEEEEEEEEEECTTSBEEEEEEEEEEEETTEEEEEEECCCHHHHHHHTCEETCEEEEEEETTTEEEEEEECGGGCCSSCE
T ss_pred eeEeEEEEEecCCceEEEEEEEEeeEEeCCEEEEecccCCHHHHHhcCCCcCCEEEEEECCCcCccceeeecccCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCcceeecCceeEEecCCCcCCHHHHHhhccccccccccccCCCCHHHHHHHHHcCCCCChHHHhcCCh
Q psy11423 411 IFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINF 490 (655)
Q Consensus 411 ~~~~P~~CP~C~~~l~~~~~~~~~~C~n~~~~C~~q~~~~i~~F~sk~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~ 490 (655)
+|.+|++||+||+++++.++++.+||+|+.. ||+|++++|.||+||+||||+|||+++|++|+++|+|++++|||+|+.
T Consensus 401 ~~~~P~~CP~Cgs~~~~~~~~~~~rC~n~~~-Cpaq~~~~l~hf~sr~amdI~GlG~~~i~~L~~~g~i~~~~Dly~L~~ 479 (586)
T 4glx_A 401 EVVFPTHCPVCGSDVERVEGEAVARCTGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTA 479 (586)
T ss_dssp ECCCCSBCTTTCCBEECCTTCSCCEESCGGG-CHHHHHHHHHHHHSTTTTCCTTCCHHHHHHHHHTTCCSSGGGGGTCCH
T ss_pred CCcCCCcCCCCCCchhhhhcccccEeCCCcC-cHHHHHhHHHhhhccccccCCCcCHHHHHHHHhcCCCCCHHHHhCCCH
Confidence 9999999999999999999999999999767 999999999999999999999999999999999999999999999999
Q ss_pred hhhccccCCcHHHHHHHHHHHHHhcccchhHHHHHhCCCCccHHHHHHHHHhCCCHHHHHhcCHHHHhcCCCCCHHHHHH
Q psy11423 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKA 570 (655)
Q Consensus 491 ~~L~~l~GfG~Ksa~nll~~I~~sk~~~l~r~L~algIpgIG~~~Ak~L~~~fgsl~~l~~as~eeL~~i~GIG~~~A~~ 570 (655)
++|..|+|||+|||+||+++|++||+.+|+|||+|||||+||+.+|+.|+++|+++++|.+|+.++|.+|+|||+++|++
T Consensus 480 ~~L~~l~g~geKsa~nL~~aIe~sk~~~l~r~l~aLGI~~vG~~~a~~La~~f~sl~~l~~a~~e~l~~i~giG~~~A~s 559 (586)
T 4glx_A 480 GKLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASH 559 (586)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHH
T ss_pred HHHhcccCccHHHHHHHHHHHHHHcCCCHHHHHHHcCCCchhHHHHHHHHHHcCCHHHHHccCHHHHhcCCCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcChhHHHHHHHHHHcCccccc
Q psy11423 571 FIKFINQPLHRLLISQLRDVGIYWLN 596 (655)
Q Consensus 571 I~~~f~~~~n~~li~~L~~~Gi~~~~ 596 (655)
|++||++++|+++|++|.+.||+|+.
T Consensus 560 i~~ff~~~~n~~~i~~L~~~Gv~~~~ 585 (586)
T 4glx_A 560 VHNFFAEESNRNVISELLAEGVHWPA 585 (586)
T ss_dssp HHHHHHSHHHHHHHHHHHHTTCBCCC
T ss_pred HHHHHcCHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999875
No 4
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.2e-176 Score=1474.60 Aligned_cols=585 Identities=36% Similarity=0.575 Sum_probs=388.9
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCccccCccc-CCCCcceecc
Q psy11423 8 KINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG-GENSKYVHHT 86 (655)
Q Consensus 8 ~~~~~~~~~~~~~L~~~l~~~~~~Yy~~~~p~isD~~YD~L~~~L~~le~~~p~~~~~~spt~~Vg~~~-~~~~~kv~H~ 86 (655)
..+..++++++++|+++|++||++||++|+|+|||++||+|+++|++||++||++.+++||||+||+.+ ..+|.+|+|.
T Consensus 7 ~~~~~~~~~~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~lE~~~P~l~~~dSPtqrVGg~~~~~~f~kV~H~ 86 (615)
T 3sgi_A 7 DQTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPELRTPDSPTQLVGGAGFATDFEPVDHL 86 (615)
T ss_dssp -CCCSSHHHHHHHHHHHHHHHHHHHHHHSCCCSSCCSSCSSSSHHHHHHTSSGGGCCTTCTTSCCCCCCCSSSCCBCCCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCcCcCCCCCCcccCCCcccccCCCceecC
Confidence 345667788999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHHhhccCCCceEEEEEecceeEEEEEEeCCEEeEEEecCCCCccchhhhhhhhcccCC
Q psy11423 87 FKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIP 166 (655)
Q Consensus 87 ~pMlSL~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP 166 (655)
+|||||+|+||.+||.+|++|+.+.++. ++.|+|||||||+||+|+|+||+|++|+|||||.+|||||+|+++|++||
T Consensus 87 ~pMlSL~n~f~~eel~~f~~rv~~~l~~--~~~~~~EpKiDGlavsL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~IP 164 (615)
T 3sgi_A 87 ERMLSLDNAFTADELAAWAGRIHAEVGD--AAHYLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVP 164 (615)
T ss_dssp SCCCCCEEECSSSCCSTTTTTSTTTTCS--CCCEEEEEEECSEEEEEEEETTEEEEEECCTTSSSCBCCHHHHHSCSSSC
T ss_pred CccCCccccCCHHHHHHHHHHHHHhcCC--CCeEEEEEEecceEEEEEEECCEEEEEEecCCCcchhhHHHHHHhhcCcc
Confidence 9999999999999999999999888762 46899999999999999999999999999999999999999999999999
Q ss_pred cccccCC---CCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecccccCC
Q psy11423 167 LVLNIKY---PPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243 (655)
Q Consensus 167 ~~l~~~~---~p~~~evRGEv~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~~ 243 (655)
++|++.+ +|..+||||||||++++|+++|+++.+.|+++|+||||+|||+|||+||++++.|+|+||+|+|+..++.
T Consensus 165 ~~L~~~~~~~~p~~levRGEv~m~~~~F~~lN~~~~~~g~~~faNpRNaAAGsLRqld~~ita~R~L~~f~y~~~~~~~~ 244 (615)
T 3sgi_A 165 ERLTPGDDYPVPEVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGF 244 (615)
T ss_dssp SSCCCCSSCCCCSEEEEEEEEECCHHHHHHHHTTCSSSSSCCCSSHHHHHHHHHTCSSTTHHHHSCCEEEEEEEEEEESC
T ss_pred hhhcCCcccCCCCeEEEEEEEEEeHHHHHHHHHHHHHcCCCcCCChHHHHHHHHHcCChhhHhhCcceEEEEeccccCCC
Confidence 9998642 5889999999999999999999999999999999999999999999999999999999999999865543
Q ss_pred CCCCCHHHHHHHHHhCCCCCCCCceeeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEee
Q psy11423 244 NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAY 323 (655)
Q Consensus 244 ~~~~~~~e~l~~L~~~GF~~~~~~~~~~~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~ 323 (655)
. +.+|++.|++|++|||+|+++...|.+++++.+|+++|.+.|..+||+|||+|||+|++++|+.||+|+|+|||||||
T Consensus 245 ~-~~t~~e~l~~L~~~Gf~v~~~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~lG~t~k~PRWAiA~ 323 (615)
T 3sgi_A 245 R-PATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAIAY 323 (615)
T ss_dssp C-CSBTTTHHHHHHHTTCCCCCCCCCBSSHHHHHHHHTTTTTSGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEE
T ss_pred C-CcCHHHHHHHHHHCCCCCCCCeEeeCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCHHHHHHhCCCCCCCCceEEE
Confidence 3 579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeeEEEEEEEEeecCcceeeeEEEEEEEEECCEEEEEeeCCCHHHHHhcCCCCCCEEEEEecCcccceeeccccc
Q psy11423 324 KFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILS 403 (655)
Q Consensus 324 Kf~~~~~~T~v~~I~~qvGRTG~itPvA~lePV~l~G~tVsratLhN~~~i~~~~i~iGd~V~v~raGdVIP~I~~vv~~ 403 (655)
|||+++++|+|++|+|||||||+|||||+|+||.|+|+|||||||||+++|+++||++||+|.|+|||||||+|++|+.+
T Consensus 324 Kfpaee~~T~l~~I~~qVGRTG~iTPvA~lePV~l~G~tVsrATLHN~d~i~~~di~iGD~V~V~rAGdVIP~V~~vv~~ 403 (615)
T 3sgi_A 324 KYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNASEIKRKGVLIGDTVVIRKAGDVIPEVLGPVVE 403 (615)
T ss_dssp ECCCSEEEEECCEECCCBCSSSCBCCBEECCCEECSSSEECCCBCCSTTTTTTTCCCBTCEEEEECCSSSSCCCCEECTT
T ss_pred cCCCceeEEEEEEEEEecCCCceeeEEEEEEeEEECCEEEEEecCCCHHHHHHcCCCCCCEEEEEEcCCCccceeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccCCCCCCCCCCccee-ecCceeEEecCCCcCCHHHHHhhccccccccccccCCCCHHHHHHHHHcCCCCCh
Q psy11423 404 LRPNDSKIFKIPNICPICNSKIIY-IESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTA 482 (655)
Q Consensus 404 ~r~~~~~~~~~P~~CP~C~~~l~~-~~~~~~~~C~n~~~~C~~q~~~~i~~F~sk~~l~I~GLG~k~i~~L~~~g~I~~i 482 (655)
.|++++.+|.+|++||+||++|++ .++++.+||+|+.. ||+|++++|.||+||+||||+|||+++|++|+++|+|+++
T Consensus 404 ~R~~~~~~~~~P~~CP~Cgs~l~~~~~~~~~~rC~n~~~-CpaQ~~~~l~hf~Sr~amdI~GlG~~~i~~L~~~g~i~~~ 482 (615)
T 3sgi_A 404 LRDGSEREFIMPTTCPECGSPLAPEKEGDADIRCPNARG-CPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAKVIADE 482 (615)
T ss_dssp CCCCCCBCCCCC--------------------------------------------------------------------
T ss_pred cCCCCCccCCCCCCCCCCCCeeeecCCCCEEEEcCCCCC-CHHHHHHHHHHHhccCccCccccCHHHHHHHHHCCCcCCH
Confidence 999999999999999999999998 67889999999656 9999999999999999999999999999999999999999
Q ss_pred HHHhcCChhhhccccCC------cHHHHHHHHHHHHHhcccchhHHHHHhCCCCccHHHHHHHHHhCCCHHHHHhcCHHH
Q psy11423 483 VDLYKINFKNLLRLDRV------SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556 (655)
Q Consensus 483 ~DL~~L~~~~L~~l~Gf------G~Ksa~nll~~I~~sk~~~l~r~L~algIpgIG~~~Ak~L~~~fgsl~~l~~as~ee 556 (655)
+|||.|+.++|+.|+|| |+|||+||+++|++||+.+|+|||+||||||||+++|++|+++|+|+++|..|+.++
T Consensus 483 aDly~L~~~~L~~l~~~~~~~g~g~ksa~nLl~aIe~sk~~~l~r~L~aLGIp~VG~~~ak~La~~Fgsle~L~~As~ee 562 (615)
T 3sgi_A 483 GELFALTERDLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSLDAIAAASTDQ 562 (615)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhCCHHHHhhccccccccCccchHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCHHHHHHHHHHcCCHHHHHhCCHHH
Confidence 99999999999999977 589999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHhcChhHHHHHHHHHHcCccccc
Q psy11423 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLN 596 (655)
Q Consensus 557 L~~i~GIG~~~A~~I~~~f~~~~n~~li~~L~~~Gi~~~~ 596 (655)
|.+++|||+++|++|++||++++|+++|++|.+.|+.+..
T Consensus 563 L~~I~GIG~~~A~sI~~ff~~~~n~~~i~~L~~~Gv~~~~ 602 (615)
T 3sgi_A 563 LAAVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVRMVD 602 (615)
T ss_dssp ----------------------------------------
T ss_pred HhhCCCCCHHHHHHHHHHHcCHHHHHHHHHHHHcCCCccc
Confidence 9999999999999999999999999999999999998754
No 5
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=100.00 E-value=1.6e-103 Score=825.98 Aligned_cols=320 Identities=43% Similarity=0.696 Sum_probs=305.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCccccCcccCCCCcceeccccccCCC
Q psy11423 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMSLD 93 (655)
Q Consensus 14 ~~~~~~~L~~~l~~~~~~Yy~~~~p~isD~~YD~L~~~L~~le~~~p~~~~~~spt~~Vg~~~~~~~~kv~H~~pMlSL~ 93 (655)
+++++++|+++|++||++||++|+|+|||++||+|+++|++||++||++.+++||||+||+.+..+|.+|+|++|||||+
T Consensus 2 ~~~~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~lE~~~P~l~~~dSPtqrVG~~~~~~f~kv~H~~pMlSL~ 81 (322)
T 3uq8_A 2 IQTQLDNLRKTLRQYEYEYHVLDNPSVPDSEYDRLFHQLKALELEHPEFLTSDSPTQRVGAKPLSGFSQIRHEIPMLSLD 81 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHHHHHHHHCGGGCCTTSGGGCSCSSCCSSCCEEECSSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCcCCCCCCCcccccCcccccCCCceecCCcccCcc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhcc-CCCceEEEEEecceeEEEEEEeCCEEeEEEecCCCCccchhhhhhhhcccCCcccccC
Q psy11423 94 NGFSDEDVIIFNKRITNELKL-TKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIK 172 (655)
Q Consensus 94 k~~~~~el~~~~~~~~~~l~~-~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~l~~~ 172 (655)
|+||.+||.+|++|+.+.++. ..++.|+|||||||+||+|+|+||+|++|+|||||.+|||||+|+++|++||++|.++
T Consensus 82 n~~~~eel~~f~~rv~~~l~~~~~~~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~IPl~L~~~ 161 (322)
T 3uq8_A 82 NAFSDAEFNAFVARIEDRLILLPAPLTFCCEPKLDGLAVSILYVNGELTQAATRGDGTTGEDITANIRTIRNVPLQLLTD 161 (322)
T ss_dssp EECSHHHHHHHHHHHHHHCSSCCSSCEEEEEEEESSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHHTCTTSCSBCSCS
T ss_pred ccCCHHHHHHHHHHHHHhccCCCcCceEEEEEeeceEEEEEEEeCCEEEEEEecCCCccchhHHHHHHHhcCCCccccCC
Confidence 999999999999999998863 1357899999999999999999999999999999999999999999999999999864
Q ss_pred CCCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecccccCCCCCCCHHHH
Q psy11423 173 YPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252 (655)
Q Consensus 173 ~~p~~~evRGEv~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~~~~~~~~~e~ 252 (655)
++|..+||||||||++++|+++|+++.+.|+++|+||||+|||+|||+||++++.|+|+||+|+|+..++..++.||++.
T Consensus 162 ~~p~~leVRGEv~m~~~~F~~lN~~~~~~g~~~faNPRNaAAGsLRqld~~ita~R~L~ff~y~~~~~~~~~~~~t~~e~ 241 (322)
T 3uq8_A 162 NPPARLEVRGEVFMPHAGFERLNKYALEHNEKTFANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDLPTTHYAR 241 (322)
T ss_dssp SCCSEEEEEEEEECCHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHTCSCHHHHTTSCCEEEEEEEEEEESCCCCSBHHHH
T ss_pred CCCceEEEEEEEEeeHHHHHHHHHHHHHhCCccccchhHHHHHHHhhcChhhhhcCccEEEEEeccccCCCCCCCCHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999755443346899999
Q ss_pred HHHHHhCCCCCCCCceeeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCcceeeE
Q psy11423 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALT 332 (655)
Q Consensus 253 l~~L~~~GF~~~~~~~~~~~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~~~~T 332 (655)
|++|++|||+|+++...|.+++++.+|+++|.+.|..+||+|||||||||++.+|+.||+|+|+||||||||||+++++|
T Consensus 242 l~~L~~~Gf~v~~~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRWAiA~Kfpaee~~T 321 (322)
T 3uq8_A 242 LQWLKSIGIPVNPEIRLCNGADEVLGFYRDIQNKRSSLGYDIDGTVLKINDIALQNELGFISKAPRWAIAYKFPAQEELT 321 (322)
T ss_dssp HHHHHHTTCCCCTTCEEEESHHHHHHHHHHHHHTTTTTSSCEEEEEEEESBHHHHHHHCEETTEETTEEEEECCCGGGCC
T ss_pred HHHHHHcCCCCCCCcEEeCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCHHHHHHcCccCCCCCceEEEcCCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred E
Q psy11423 333 K 333 (655)
Q Consensus 333 ~ 333 (655)
.
T Consensus 322 ~ 322 (322)
T 3uq8_A 322 L 322 (322)
T ss_dssp C
T ss_pred C
Confidence 3
No 6
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=100.00 E-value=5.9e-102 Score=811.88 Aligned_cols=311 Identities=41% Similarity=0.678 Sum_probs=296.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCccccCcccCCCCcceeccccccCC
Q psy11423 13 KLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMSL 92 (655)
Q Consensus 13 ~~~~~~~~L~~~l~~~~~~Yy~~~~p~isD~~YD~L~~~L~~le~~~p~~~~~~spt~~Vg~~~~~~~~kv~H~~pMlSL 92 (655)
++++++++|+++|++||++||++|+|+|||++||+|+++|++||++||++.+++||||+||+.+..+|.+|+|++|||||
T Consensus 3 ~~~~~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~lE~~~p~l~~~dSPTqrVG~~~~~~f~kv~H~~pMlSL 82 (318)
T 3jsl_A 3 DLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTVRVGGEAQASFNKVNHDTPMLSL 82 (318)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHCGGGCCTTCGGGGGCCSCCCCCCEEECSSCCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhCcCCCCCCCCccccCccccccCceeecCCcCcCc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhccCCCceEEEEEecceeEEEEEEeCCEEeEEEecCCCCccchhhhhhhhcccCCcccccC
Q psy11423 93 DNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIK 172 (655)
Q Consensus 93 ~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~l~~~ 172 (655)
+|+||.+||.+|++|+.+.++ ++.|+|||||||+||+|+|+||+|++|+|||||.+|||||+|+++|++||++|++
T Consensus 83 ~n~f~~eel~~f~~r~~~~l~---~~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~IP~~L~~- 158 (318)
T 3jsl_A 83 GNAFNEDDLRKFDQRIREQIG---NVEYMCELKIDGLAVSLKYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKE- 158 (318)
T ss_dssp EEECSHHHHHHHHHHHHHHTC---SCCEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTTSCSBCSS-
T ss_pred cccCCHHHHHHHHHHHHhhcC---CceEEEEEeecceEEEEEEECCEEEEEEeCCCCccchhHHHHHHHhcCCccccCC-
Confidence 999999999999999998886 5789999999999999999999999999999999999999999999999999974
Q ss_pred CCCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecccccCCCCCCCHHHH
Q psy11423 173 YPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSEL 252 (655)
Q Consensus 173 ~~p~~~evRGEv~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~~~~~~~~~e~ 252 (655)
|..+||||||||++++|+++|+++.+.|+++|+||||+|||+|||+||++++.|+|+||+|+|+..++.. +.+|++.
T Consensus 159 --~~~levRGEv~m~~~~F~~lN~~~~~~g~~~faNPRNaAAGsLRqld~~ita~R~L~ff~y~~~~~~~~~-~~t~~e~ 235 (318)
T 3jsl_A 159 --PLNVEVRGEAYMPRRSFLRLNEEKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFN-ARSQSEA 235 (318)
T ss_dssp --CCCEEEEEEEECCHHHHHHHHHHHBTTBCCCCSSHHHHHHHHHSCSCHHHHHHSCCEEEEEEESCCTTCC-CSBHHHH
T ss_pred --CCcEEEEEEEEEcHHHHHHHHHHHHHhCCccccChHHHHHHHHHccChhhhhhCcceEEEEecccccCCC-CCCHHHH
Confidence 5679999999999999999999999999999999999999999999999999999999999998765543 4899999
Q ss_pred HHHHHhCCCCCCCCceeeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCccee
Q psy11423 253 LNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEA 330 (655)
Q Consensus 253 l~~L~~~GF~~~~~~~~~~~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~~~ 330 (655)
|++|++|||+|+++..+|.++++|++|+++|.+.|..+||+||||||||||+++|+.||+|+|+||||||||||+++-
T Consensus 236 l~~L~~~GF~v~~~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRWAiAyKfp~~~~ 313 (318)
T 3jsl_A 236 LDELDKLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFTQKSPRWAIAYKFPAEEH 313 (318)
T ss_dssp HHHHHHHTCCCCTTCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBTTEEEEECC----
T ss_pred HHHHHHCCCCcCCcceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEEeCHHHHHHhCCCCCCCCceEEECCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999864
No 7
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=100.00 E-value=2.6e-101 Score=812.16 Aligned_cols=322 Identities=39% Similarity=0.634 Sum_probs=298.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCccccCcccCCCCcceecccc
Q psy11423 9 INFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFK 88 (655)
Q Consensus 9 ~~~~~~~~~~~~L~~~l~~~~~~Yy~~~~p~isD~~YD~L~~~L~~le~~~p~~~~~~spt~~Vg~~~~~~~~kv~H~~p 88 (655)
.+++++++++++|+++|++||++||++|+|+|||++||+|+++|++||++||++.+++||||+||+.+.++|.+|+|.+|
T Consensus 6 ~~~~~~~~~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~lE~~~P~l~~~dSPtqrVG~~~~~~f~kv~H~~p 85 (332)
T 1ta8_A 6 LTLTAATTRAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVGGKVLSGFEKAPHDIP 85 (332)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHHHHHHHHHHHCGGGCCTTCGGGGGCCCBCSSCCEEECSSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCccccCCCCCccccCccccccCCccCCCCc
Confidence 45667778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhhccCCCceEEEEEecceeEEEEEEeCCEEeEEEecCCCCccchhhhhhhhcccCCcc
Q psy11423 89 MMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLV 168 (655)
Q Consensus 89 MlSL~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~ 168 (655)
||||+|+||.+||.+|++|+.+.++ .++.|+|||||||+||+|+|+||+|++|+|||||.+|||||+|+++|++||++
T Consensus 86 MlSL~n~f~~eel~~w~~rv~~~l~--~~~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~IP~~ 163 (332)
T 1ta8_A 86 MYSLNDGFSKEDIFAFDERVRKAIG--KPVAYCCELKIDGLAISLRYENGVFVRGATRGDGTVGENITENLRTVRSVPMR 163 (332)
T ss_dssp CCCCCEECSHHHHHHHHHHHHHHHS--SCCCEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEBCHHHHTTCTTSCSB
T ss_pred CCCccccCCHHHHHHHHHHHHHhcC--CCceEEEeeeecceEEEEEEECCEEEEEEcCCCCccchhHHHHHHHhcCCccc
Confidence 9999999999999999999998876 24789999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecccccCCCCCCC
Q psy11423 169 LNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSS 248 (655)
Q Consensus 169 l~~~~~p~~~evRGEv~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~~~~~~~ 248 (655)
|. + |..+||||||||++++|+++|++|.+.|+++|+||||+|||+|||+||++++.|+|+||+|+|+..++.. +.+
T Consensus 164 L~--~-p~~leVRGEv~m~~~~F~~lN~~~~~~g~~~faNPRNaAAGsLrqld~~ita~R~L~ff~y~i~~~~~~~-~~t 239 (332)
T 1ta8_A 164 LT--E-PISVEVRGECYMPKQSFVALNEEREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMK-AKT 239 (332)
T ss_dssp CS--S-CCCEEEEEEEECCHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHTCSBHHHHHTSCCEEEEEEESCCTTCC-CSB
T ss_pred cC--C-CCeEEEEEEEEEEHHHHHHHHHHHHhcCCccccChHHHHHHHHHccChhhHhhCCCEEEEEecccccCCC-CCC
Confidence 97 2 7889999999999999999999999999999999999999999999999999999999999997432222 489
Q ss_pred HHHHHHHHHhCCCCCCCCceeeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCcc
Q psy11423 249 HSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSK 328 (655)
Q Consensus 249 ~~e~l~~L~~~GF~~~~~~~~~~~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~ 328 (655)
|++.|++|++|||+|+++..+|.+++++++|+++|.+.|..+||+||||||||||+.+|+.||+|+|+||||||||||++
T Consensus 240 ~~e~l~~L~~~GF~v~~~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~tsk~PRWAiAyKfpae 319 (332)
T 1ta8_A 240 QFEALEELSAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFALQDELGFTVKAPRWAIAYKFPPE 319 (332)
T ss_dssp HHHHHHHHHHTTCCCCTTCEEESSHHHHHHHHHHHHHTGGGSSSCEEEEEEEESBHHHHHHHCBCSSSBSSEEEEECC--
T ss_pred HHHHHHHHHHcCCCCCCcceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEecCHHHHHHhCCcCCCCCceeEecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEE
Q psy11423 329 EALTKIKA 336 (655)
Q Consensus 329 ~~~T~v~~ 336 (655)
+++|+|+.
T Consensus 320 e~~T~l~~ 327 (332)
T 1ta8_A 320 EAETVVZH 327 (332)
T ss_dssp --------
T ss_pred eEEEEEec
Confidence 99999974
No 8
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=100.00 E-value=4.7e-101 Score=806.88 Aligned_cols=315 Identities=42% Similarity=0.690 Sum_probs=295.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCccccCcccCCCCcceeccccccC
Q psy11423 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMS 91 (655)
Q Consensus 12 ~~~~~~~~~L~~~l~~~~~~Yy~~~~p~isD~~YD~L~~~L~~le~~~p~~~~~~spt~~Vg~~~~~~~~kv~H~~pMlS 91 (655)
+.+++++++|+++|++||++||++|+|+|||++||+|+++|++||++||++.+++||||+||+.+.++|.+|+|.+||||
T Consensus 4 ~~~~~~~~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~lE~~~P~l~~~dSPtqrVG~~~~~~f~kv~H~~pMlS 83 (318)
T 1b04_A 4 QQAERRAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPTQRIGGPPLEAFRKVAHRVPMMS 83 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSCCSSCHHHHHHHHHHHHHHHHCGGGCCTTCGGGGTCCCCCSCCCEECCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCccccCCCCCccccCccccccCCccCCCCcCcC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhhccCCCceEEEEEecceeEEEEEEeCCEEeEEEecCCCCccchhhhhhhhcccCCccccc
Q psy11423 92 LDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI 171 (655)
Q Consensus 92 L~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~l~~ 171 (655)
|+|+||.+||.+|++|+.+.++ .+.|+|||||||+||+|+|+||+|++|+|||||.+|||||+|+++|++||++|+
T Consensus 84 L~n~f~~eel~~f~~rv~~~l~---~~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~IP~~L~- 159 (318)
T 1b04_A 84 LANAFGEGDLRDFDRRVRQEVG---EAAYVCELAIDGLAVSVRYEDGYFVQGATRGDGTTGEDITENLKTIRSLPLRLK- 159 (318)
T ss_dssp CCEECSTTHHHHHHHHHHHHHS---SCCEEEEEEESSEEEEEEEETTEEEEEEECTTSSCEEBCHHHHHTCTTSCSBCS-
T ss_pred ccccCCHHHHHHHHHHHHHhcc---CceEEEEEecccEEEEEEEECCEEEEEEccCCCcccHHHHHhHHHhcCCCcccC-
Confidence 9999999999999999988886 378999999999999999999999999999999999999999999999999997
Q ss_pred CCCCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecccccCCCCCCCHHH
Q psy11423 172 KYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251 (655)
Q Consensus 172 ~~~p~~~evRGEv~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~~~~~~~~~e 251 (655)
+ |..+||||||||++++|+++|++|.+.|+++|+||||+|||+|||+||++++.|+|+||+|+|+..++.. +.+|++
T Consensus 160 -~-p~~levRGEv~m~~~~F~~lN~~~~~~g~~~faNpRNaAAGsLrqld~~ita~R~L~ff~y~~~~~~~~~-~~t~~e 236 (318)
T 1b04_A 160 -E-PVSLEARGEAFMPKASFLRLNEERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALG-IASHSE 236 (318)
T ss_dssp -S-CCCEEEEEEEECCHHHHHHHHHHHHHC--CCCSCHHHHHHHHHHSSCHHHHHHTCCEEEEEEETTTTTTT-CCBHHH
T ss_pred -C-CCeEEEEEEEEEEHHHHHHHHHHHHHcCCCccchhhHHHHHHHHccChhhHhhCCCEEEEEecccccCCC-CCCHHH
Confidence 2 7889999999999999999999999999999999999999999999999999999999999997432222 489999
Q ss_pred HHHHHHhCCCCCCCCceeeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCcceee
Q psy11423 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEAL 331 (655)
Q Consensus 252 ~l~~L~~~GF~~~~~~~~~~~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~~~~ 331 (655)
.|++|++|||+|+++..+|.+++++++|+++|.+.|..+||+||||||||||+.+|+.||+|+|+||||||||||+++++
T Consensus 237 ~l~~L~~~Gf~v~~~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRWAiA~Kfpaee~~ 316 (318)
T 1b04_A 237 ALDYLQALGFKVNPERRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFAQQRALGATAKSPRWAIAYKFPAEEVV 316 (318)
T ss_dssp HHHHHHHTTCCCCTTCEEESSHHHHHHHHHHHHHHSTTCSSCEEEEEEEECBHHHHHHHCCCSSSCTTEEEEECCCC---
T ss_pred HHHHHHHcCCCCCCcceEeCCHHHHHHHHHHHHHHHhhCCCCCCcEEEEecCHHHHHHhCCcCCCCCceeeecCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EE
Q psy11423 332 TK 333 (655)
Q Consensus 332 T~ 333 (655)
|+
T Consensus 317 T~ 318 (318)
T 1b04_A 317 TT 318 (318)
T ss_dssp --
T ss_pred cC
Confidence 85
No 9
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=100.00 E-value=8.4e-100 Score=800.44 Aligned_cols=317 Identities=37% Similarity=0.567 Sum_probs=299.8
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCccccCcc-cCCCCcceeccc
Q psy11423 9 INFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLV-GGENSKYVHHTF 87 (655)
Q Consensus 9 ~~~~~~~~~~~~L~~~l~~~~~~Yy~~~~p~isD~~YD~L~~~L~~le~~~p~~~~~~spt~~Vg~~-~~~~~~kv~H~~ 87 (655)
.++..+++++++|+++|++||++||++|+|+|||++||+|+++|++||++||++.+++||||+||+. +.++|.+|+|.+
T Consensus 8 ~~~~~~~~~i~~L~~~l~~~~~~YY~~d~p~IsD~eYD~L~~eL~~lE~~~P~l~~~dSPtqrVG~~~~~~~f~kv~H~~ 87 (328)
T 1zau_A 8 QTAPEVLRQWQALAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPELRTPDSPTQLVGGAGFATDFEPVDHLE 87 (328)
T ss_dssp CCHHHHHTTHHHHHHHHHHHHHHHTTTCCCSSCTHHHHHHHHHHHHHHHTSSTTCCTTCTTTTCSSCCCCCCCCCEECSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCccccCCCCCccccCCccccccCCccCCCC
Confidence 4566677899999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHHhhccCCCceEEEEEecceeEEEEEEeCCEEeEEEecCCCCccchhhhhhhhcccCCc
Q psy11423 88 KMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPL 167 (655)
Q Consensus 88 pMlSL~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~ 167 (655)
|||||+|+||.+||.+|++|+.+.++ .++.|+|||||||+||+|+|+||+|++|+|||||.+|||||+|+++|++||+
T Consensus 88 pMlSL~n~f~~eel~~f~~rv~~~l~--~~~~~~~EpKiDGlaisL~Ye~G~Lv~a~TRGDG~~GEDVT~nvrtI~~IP~ 165 (328)
T 1zau_A 88 RMLSLDNAFTADELAAWAGRIHAEVG--DAAHYLCELKIDGVALSLVYREGRLTRASTRGDGRTGEDVTLNARTIADVPE 165 (328)
T ss_dssp CCCCCCCBSSHHHHHHHHHGGGTTTC--SCSCEEEEEEECSEEEEEECGGGBCCBCBBCTTSSEECBCHHHHHHSSSCCS
T ss_pred CCCCccccCCHHHHHHHHHHHHHhcC--CCcceEEeeecceEEEEEEEECCEEEEEEccCCCcccHHHHHHHHHhcCCCh
Confidence 99999999999999999999988775 2478999999999999999999999999999999999999999999999999
Q ss_pred cc-ccC--CCCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecccccCCC
Q psy11423 168 VL-NIK--YPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMN 244 (655)
Q Consensus 168 ~l-~~~--~~p~~~evRGEv~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~~~ 244 (655)
+| .+. +.|..+||||||||++++|+++|+++.+.|+++|+||||+|||+|||+||+++++|+|+||+|+++..++..
T Consensus 166 ~L~~g~~~~~p~~leVRGEv~m~~~~F~~lN~~~~~~g~~~faNPRNaAAGsLrqld~~ita~R~L~f~~y~i~~~~~~~ 245 (328)
T 1zau_A 166 RLTPGDDYPVPEVLEVRGEVFFRLDDFQALNASLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFR 245 (328)
T ss_dssp BCCCBTTBCCCSCCEEEEEEBCCHHHHHHHHHSCSSTTSCCCSSHHHHHHHHHTCSSHHHHHHSCCBCCCCBCCCCSSCC
T ss_pred hhccCCcCCCCCeEEEEEEEEEEHHHHHHHHHHHHHcCCccccChHHHHHHHHHccChhhhhcCcceEEEEeccccCCCC
Confidence 99 542 258889999999999999999999999999999999999999999999999999999999999997432222
Q ss_pred CCCCHHHHHHHHHhCCCCCCCCceeeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeec
Q psy11423 245 MPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYK 324 (655)
Q Consensus 245 ~~~~~~e~l~~L~~~GF~~~~~~~~~~~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~K 324 (655)
+.+|++.|++|++|||+|+++...|.+++++.+|+++|.+.|..+||+||||||||||+.+|+.||+|+|+||||||||
T Consensus 246 -~~t~~e~l~~L~~~Gf~v~~~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~~LG~t~k~PRWAiAyK 324 (328)
T 1zau_A 246 -PATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWGEHRHEVDHEIDGVVVKVDEVALQRRLGSTSRAPRWAIAYK 324 (328)
T ss_dssp -CSBHHHHHHHHHTTTCCCCCCCCCBCHHHHHHHHHHHTTTTCSSCSSCEEEEEEEECBHHHHTTSCBCSSSBSSCCCEE
T ss_pred -CCCHHHHHHHHHHcCCCCCCceEEeCCHHHHHHHHHHHHHHHhcCCCCCceEEEEecCHHHHHHhCccCCCCCceeEeC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q psy11423 325 FLSK 328 (655)
Q Consensus 325 f~~~ 328 (655)
||++
T Consensus 325 fpae 328 (328)
T 1zau_A 325 YPPE 328 (328)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9985
No 10
>4glw_A DNA ligase; inhibitor, ligase-ligase inhibitor complex; HET: DNA 0XT NMN; 2.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=5.2e-98 Score=784.07 Aligned_cols=305 Identities=37% Similarity=0.600 Sum_probs=265.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCccccCcccCCCCcceeccccccCCC
Q psy11423 14 LSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMSLD 93 (655)
Q Consensus 14 ~~~~~~~L~~~l~~~~~~Yy~~~~p~isD~~YD~L~~~L~~le~~~p~~~~~~spt~~Vg~~~~~~~~kv~H~~pMlSL~ 93 (655)
+++||++|+++|++||++||++|+|+|||++||+|+++|++||++||++.+++|||++||+.+..+|.+|+|++|||||+
T Consensus 1 i~~ri~~L~~~i~~~~~~YY~~~~p~IsD~eYD~L~~eL~~le~~~P~~~~~~sPt~~VG~~~~~~f~kv~H~~pMlSL~ 80 (305)
T 4glw_A 1 MNKRMNELVALLNRYATEYYTSDNPSVSDSEYDRLYRELVELETAYPEQVLADSPTHRVGGKVLDGFEKYSHQYPLYSLQ 80 (305)
T ss_dssp -CHHHHC-----------------------------CHHHHHHHHSGGGCCTTCGGGGSCCCBCSSCEEEECSSCCCCCC
T ss_pred ChHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCccccCCCCCccccCccccccccceeeeeeeeccC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhhccCCCceEEEEEecceeEEEEEEeCCEEeEEEecCCCCccchhhhhhhhcccCCcccccCC
Q psy11423 94 NGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKY 173 (655)
Q Consensus 94 k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~l~~~~ 173 (655)
|+|+.+||.+|++|+.+.++ ...|+|||||||+||+|+|+||+|++|+|||||.+|||||+|+++|++||++|+.
T Consensus 81 n~~~~~el~~f~~r~~~~l~---~~~~~~epKiDGlavsL~Y~~G~L~~a~TRGDG~~GeDiT~n~~tI~~IP~~l~~-- 155 (305)
T 4glw_A 81 DAFSREELDAFDARVRKEVA---HPTYICELKIDGLSISLTYEKGILVAGVTRGDGSIGENITENLKRVKDIPLTLPE-- 155 (305)
T ss_dssp EECSHHHHHHHHHHHTTTCS---SCCEEEEEEECSEEEEEEEETTEEEEEEECTTSSEEEECHHHHTTSTTSCSBCSS--
T ss_pred CcCCHHHHHHHHHHHHHhcC---CCcEEEEeeecceEEEEEEeCCeEEEEEecCCCcchhhHHHHHhhccCCcccCCC--
Confidence 99999999999999988876 4689999999999999999999999999999999999999999999999999974
Q ss_pred CCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecccccCCCCCCCHHHHH
Q psy11423 174 PPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253 (655)
Q Consensus 174 ~p~~~evRGEv~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~~~~~~~~~e~l 253 (655)
|..+||||||||++++|+++|+++.+.|+++|+||||+|||+|||+||++++.|+|+||+|++..+++ +.+|++.|
T Consensus 156 -~~~levRGEv~m~~~~F~~~n~~~~~~g~~~faNpRNaaAGslrq~d~~~~~~r~L~f~~y~~~~~~~---~~s~~e~l 231 (305)
T 4glw_A 156 -ELDITVRGECYMPRASFDQVNQARQENGEPEFANPRNAAAGTLRQLDTAVVAKRNLATFLYQEASPST---RDSQEKGL 231 (305)
T ss_dssp -CCCEEEEEEEECCHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHSSSBHHHHHHSCCEEEEEEESSSCS---SSBHHHHH
T ss_pred -cccccccceEEeehhhHHHHHHHHHhcCCccchhhhHHHhhhhhccCchhhhhhcceEEEeeeccccc---cchHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999986543 58999999
Q ss_pred HHHHhCCCCCCCCceeeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCc
Q psy11423 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLS 327 (655)
Q Consensus 254 ~~L~~~GF~~~~~~~~~~~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~ 327 (655)
++|++|||+++++..+|.+++++++|+++|.+.|.++||+|||||||||++.+|+.||+|+|+|||||||||||
T Consensus 232 ~~L~~~Gf~~~~~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGiVikvn~~~~q~~lG~tsk~PrWAiA~KfpA 305 (305)
T 4glw_A 232 KYLEQLGFVVNPKRILAENIDEIWNFIQEVGQERENLPYDIDGVVIKVNDLASQEELGFTVKAPKWAVAYKFPA 305 (305)
T ss_dssp HHHHHHTCCCCCCCEEESSHHHHHHHHHHHHHHGGGSSSCEEEEEEEECBHHHHHHHCBCSSSBSSEEEEECCC
T ss_pred HHHHhCCCccCCceEEeCCHHHHHHHHHHHHHHhhcCCCCCCeEEEEEeCHHHHHHcCCcCCCCCceEEeCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997
No 11
>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5}
Probab=100.00 E-value=4e-38 Score=340.56 Aligned_cols=223 Identities=15% Similarity=0.141 Sum_probs=190.0
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCCCCCCCCCccccCcccCCCCcceeccccccCCCCCCChHHHHHHHHHHHHhhccCCC
Q psy11423 38 PIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN 117 (655)
Q Consensus 38 p~isD~~YD~L~~~L~~le~~~p~~~~~~spt~~Vg~~~~~~~~kv~H~~pMlSL~k~~~~~el~~~~~~~~~~l~~~~~ 117 (655)
+.-.|++||+|+++|.+||++| ++. ||+.+..+|+++ .||+||+|+++. |.+ +
T Consensus 42 ~~~~D~eyd~l~~el~~lE~~~-~~~--------vg~~~~~~fpkv---~~mlsL~~~~~~-----~~~-~--------- 94 (389)
T 2vug_A 42 DEFDGIRYVRFKDSAGKLRRGT-VVI--------DEEYVIPGFPHI---KRIINLRSGIRR-----IFK-R--------- 94 (389)
T ss_dssp CCTTSCCEEECSSCBTTBCTTC-EEE--------ETTEEECCCCCC---EEESSSHHHHHH-----HSS-S---------
T ss_pred cccCCHHHHHHHHHHHHHHhhc-eee--------eCcEEccCCCCc---ccccCchhhhhh-----hcc-C---------
Confidence 3556999999999999999998 765 899888999988 899999998643 542 1
Q ss_pred ceEEEEEecceeEEEEEEeCCEEeEEEecCCCCccchhhhhhhhccc-CCcccccCCCCceEEEEEEEEeehhhHHHHHH
Q psy11423 118 IEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHK-IPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196 (655)
Q Consensus 118 ~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~-iP~~l~~~~~p~~~evRGEv~~~~~~F~~~n~ 196 (655)
..|+||+|+||+++++.|++|+ ++|.|||+|. +|||+| +|++ ||+.|.+. |..++||||+||+...|+++|
T Consensus 95 ~~~vvEeKlDG~~v~l~y~~G~-v~a~TRg~g~--e~iT~n--~i~~wip~~L~~~--~~~l~L~GEvv~~~~~f~~~n- 166 (389)
T 2vug_A 95 GEFYVEEKVDGYNVRVVMYKGK-MLGITRGGFI--CPFTTE--RIPDFVPQEFFKD--NPNLILVGEMAGPESPYLVEG- 166 (389)
T ss_dssp CEEEEEEECCSEEEEEEEETTE-EEEEETTSCB--CHHHHH--HGGGTSCTHHHHH--CTTEEEEEEEESSSCSSCSCC-
T ss_pred CeEEEEEeecCcEEEEEEECCE-EEEEeCCCCC--CCCchh--hhhHhHHHHHhcC--CCcEEEEEEEEecCChHHHhc-
Confidence 3799999999999999999999 8999999999 999999 8888 89877532 567999999999998886433
Q ss_pred HHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecccccCCCCCCCHHHHHHHHHhCCCCCCCCceeeC--CHH
Q psy11423 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVLS--GVN 274 (655)
Q Consensus 197 ~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~~~~~~~~~e~l~~L~~~GF~~~~~~~~~~--~~~ 274 (655)
++|| .|++.||+|++...++..+ .++.+.+++|+++||++++....+. +.+
T Consensus 167 ---------~~np-----------------~r~l~F~vFDV~~~~~g~~-~s~~er~~~L~~lG~~~vp~~~~~~~~~~e 219 (389)
T 2vug_A 167 ---------PPYV-----------------KEDIQFFLFDVQEIKTGRS-LPVEERLKIAEEYGINHVEVFGKYTKDDVD 219 (389)
T ss_dssp ---------CTTC-----------------CSSCEEEEEEEEETTTCCB-CCHHHHHHHHHHHTCCBCCEEEEEEGGGHH
T ss_pred ---------ccCc-----------------ccCCEEEEEEeeccCCCCc-CCHHHHHHHHHHcCCCCCCeEEEEcCCCHH
Confidence 2444 5789999999974332222 6899999999999999998766666 789
Q ss_pred HHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCc---eEeecCCccee
Q psy11423 275 KLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRF---ALAYKFLSKEA 330 (655)
Q Consensus 275 ev~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~Prw---aiA~Kf~~~~~ 330 (655)
++.++++.|. +|++||+|+|+++.. +.+|+|+++||| |+|||||+++.
T Consensus 220 el~~~i~~~~------~~~~EGvViK~~d~~--~~lkyt~~~pr~~dlaiA~Kfp~e~~ 270 (389)
T 2vug_A 220 ELYQLIERLS------KEGREGIIMKSPDMK--KIVKYVTPYANINDIKIGARVFYELP 270 (389)
T ss_dssp HHHHHHHHHH------HTTCCEEEEECTTSC--CEEEEECHHHHHHHHHHHHTTGGGSC
T ss_pred HHHHHHHHhc------CCCCCeEEEEECChh--hhcCceecCCCCcceEEEEecccccc
Confidence 9999999886 899999999999987 789999999999 99999999974
No 12
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=99.12 E-value=2.2e-11 Score=105.79 Aligned_cols=51 Identities=37% Similarity=0.639 Sum_probs=48.5
Q ss_pred CCCCeEecccccCccEEEecCCCCchHHHHHHcCCeeeCHHHHHHHHhccc
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGFS 650 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~~g~K~~kA~~lgi~ii~e~~f~~~l~~~~ 650 (655)
.+|++|.++||++|||||+|+++|+|++||+++||+||+|++|++||...+
T Consensus 32 ~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~lgI~Ii~E~~f~~~l~~~~ 82 (92)
T 1l7b_A 32 RLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLEART 82 (92)
T ss_dssp HTTCEEESCCSSSCCCBEECSSSSTTHHHHHCSSSCCEEHHHHHHHHHHHH
T ss_pred HcCCEEeCcccCCeeEEEeCCCCChHHHHHHHcCCcEEeHHHHHHHHHhcc
Confidence 789999999999999999999999999999999999999999999997544
No 13
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=99.09 E-value=6.7e-11 Score=105.89 Aligned_cols=49 Identities=43% Similarity=0.712 Sum_probs=47.3
Q ss_pred CCCCeEecccccCccEEEecCCCC-chHHHHHHcCCeeeCHHHHHHHHhc
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQKPG-KKLEKAIKLNIKILDEKNFVKIVKG 648 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~~g-~K~~kA~~lgi~ii~e~~f~~~l~~ 648 (655)
.+||+|.+|||++|||||+|+++| +|++||+++||+||+|++|++||+.
T Consensus 58 ~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f~~ll~~ 107 (109)
T 2k6g_A 58 RYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRN 107 (109)
T ss_dssp HTTCEEESSCCTTCCEEEECBCCCHHHHHHHHHHTCEEECHHHHHHHHHH
T ss_pred HcCCEeeCcccCCceEEEECCCCChHHHHHHHHcCCeEEeHHHHHHHHHh
Confidence 789999999999999999999999 9999999999999999999999964
No 14
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=8.7e-11 Score=105.49 Aligned_cols=50 Identities=42% Similarity=0.699 Sum_probs=47.9
Q ss_pred CCCCeEecccccCccEEEecCCCC-chHHHHHHcCCeeeCHHHHHHHHhcc
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQKPG-KKLEKAIKLNIKILDEKNFVKIVKGF 649 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~~g-~K~~kA~~lgi~ii~e~~f~~~l~~~ 649 (655)
.+|++|.++||++|||||+|+++| +|++||+++||+||+|++|++||+..
T Consensus 48 ~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~~lgI~IisE~~f~~ll~~~ 98 (112)
T 2ebu_A 48 RYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRTM 98 (112)
T ss_dssp HTTCEECSSCCSSCCEEEECSSCCSHHHHHHHHHTCEEEEHHHHHHHHHHS
T ss_pred HcCCEEeccccCCeeEEEecCCCChHHHHHHHHcCCeEEeHHHHHHHHhhC
Confidence 789999999999999999999999 99999999999999999999999754
No 15
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=98.86 E-value=2e-09 Score=93.05 Aligned_cols=66 Identities=23% Similarity=0.405 Sum_probs=60.7
Q ss_pred hcccchhHHHHHh-CCCCccHHHHHHHHHhCCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHhcChh
Q psy11423 514 SKLTTFSRFIYAL-GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPL 579 (655)
Q Consensus 514 sk~~~l~r~L~al-gIpgIG~~~Ak~L~~~fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f~~~~ 579 (655)
.+..++++++.+| +|||||+++|++|+++|++++++..++.++|.+++|||+++|++|.++|+++.
T Consensus 22 ~~~~~~~~~~~~L~~IpgIG~~~A~~Ll~~fgs~~~l~~as~~eL~~i~GIG~~~a~~I~~~l~~~~ 88 (91)
T 2a1j_B 22 LEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 88 (91)
T ss_dssp HHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHHSCS
T ss_pred ccCCHHHHHHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHhhhh
Confidence 3446678999999 99999999999999999999999999999999999999999999999997654
No 16
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=98.72 E-value=2e-08 Score=86.31 Aligned_cols=61 Identities=25% Similarity=0.440 Sum_probs=56.7
Q ss_pred chhHHHHHh-CCCCccHHHHHHHHHhCCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHhcCh
Q psy11423 518 TFSRFIYAL-GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQP 578 (655)
Q Consensus 518 ~l~r~L~al-gIpgIG~~~Ak~L~~~fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f~~~ 578 (655)
.++++..+| +|||||+++|++|+++|++++++..++.++|.+++|||+++|++|..+|+++
T Consensus 13 ~~~~~~~~L~~IpgIG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~~ 74 (89)
T 1z00_A 13 FVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEP 74 (89)
T ss_dssp HHHHHHHHHTTSSSCCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 356778888 9999999999999999999999999999999999999999999999999764
No 17
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=98.70 E-value=4.5e-09 Score=94.53 Aligned_cols=47 Identities=23% Similarity=0.347 Sum_probs=41.7
Q ss_pred CCCCeEecccccCccEEEecCC---CCchHHHHHHcCCeeeCHHHHHHHHh
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQK---PGKKLEKAIKLNIKILDEKNFVKIVK 647 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~---~g~K~~kA~~lgi~ii~e~~f~~~l~ 647 (655)
.+||+|.+|||++|||||+|+. +|+|++||++|||||++|+. +.++.
T Consensus 35 ~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~~-l~~~~ 84 (113)
T 2cok_A 35 KLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDF-LQDVS 84 (113)
T ss_dssp HTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHHTTCCEECTHH-HHHHH
T ss_pred HCCCEEcCccccCccEEEECCCCCCCChHHHHHHHCCCcEEeHHH-HHHHH
Confidence 7899999999999999999954 88999999999999999995 44443
No 18
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=98.61 E-value=3.5e-08 Score=81.46 Aligned_cols=56 Identities=29% Similarity=0.478 Sum_probs=52.7
Q ss_pred hCCCCccHHHHHHHHHhCCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHhcChhHH
Q psy11423 526 LGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHR 581 (655)
Q Consensus 526 lgIpgIG~~~Ak~L~~~fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f~~~~n~ 581 (655)
.+|||||+++|++|+++|++++.+..++.++|..++|||+++|.+|..+|+++.+.
T Consensus 17 ~~i~giG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~~~~~ 72 (75)
T 1x2i_A 17 EGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVITAPYIE 72 (75)
T ss_dssp TTSTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHSCCCC
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHhCcccc
Confidence 59999999999999999999999999999999999999999999999999876553
No 19
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=98.61 E-value=2.4e-08 Score=80.53 Aligned_cols=50 Identities=20% Similarity=0.396 Sum_probs=47.9
Q ss_pred CCCCccHHHHHHHHHhCCCHHHHHhcCHHHHhcCCCCCHHH-HHHHHHHhcCh
Q psy11423 527 GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTT-VKAFIKFINQP 578 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~fgsl~~l~~as~eeL~~i~GIG~~~-A~~I~~~f~~~ 578 (655)
.|||||+++++.|+++|+|+++|..||.++|.++ +|.+. |+.|++||+.+
T Consensus 8 ~IpGIG~kr~~~LL~~Fgs~~~i~~As~eeL~~v--ig~~~~A~~I~~~l~~~ 58 (63)
T 2a1j_A 8 KMPGVNAKNCRSLMHHVKNIAELAALSQDELTSI--LGNAANAKQLYDFIHTS 58 (63)
T ss_dssp TSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHH--HSCHHHHHHHHHHHHCC
T ss_pred cCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHH--cCchHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999 99999 99999999754
No 20
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=98.49 E-value=7.6e-08 Score=80.62 Aligned_cols=50 Identities=20% Similarity=0.324 Sum_probs=48.8
Q ss_pred CCCCccHHHHHHHHHhCCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHhc
Q psy11423 527 GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f~ 576 (655)
+|||||+++|++|+++|++++++..++.++|.+++|||+++|++|.++|+
T Consensus 28 ~I~gIG~~~A~~Ll~~fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~~ 77 (78)
T 1kft_A 28 TIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 77 (78)
T ss_dssp GCTTCSSSHHHHHHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999986
No 21
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=98.44 E-value=1.6e-07 Score=79.98 Aligned_cols=52 Identities=19% Similarity=0.388 Sum_probs=49.1
Q ss_pred CCCCccHHHHHHHHHhCCCHHHHHhcCHHHHhcCCCCCHHH-HHHHHHHhcChhH
Q psy11423 527 GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTT-VKAFIKFINQPLH 580 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~fgsl~~l~~as~eeL~~i~GIG~~~-A~~I~~~f~~~~n 580 (655)
.|||||++++++|+++|+|+++|..|+.++|.++ ||... |+.|++||+.+..
T Consensus 22 ~IpGIG~kr~~~LL~~FgSl~~i~~AS~eEL~~v--ig~~~~A~~I~~~l~~~~~ 74 (84)
T 1z00_B 22 KMPGVNAKNCRSLMHHVKNIAELAALSQDELTSI--LGNAANAKQLYDFIHTSFA 74 (84)
T ss_dssp TCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHH--HSCHHHHHHHHHHHTSBHH
T ss_pred hCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHH--hCchHHHHHHHHHHHhhhh
Confidence 8999999999999999999999999999999999 99999 9999999986543
No 22
>1fvi_A Chlorella virus DNA ligase-adenylate; adenylated DNA ligase; HET: AMP; 2.00A {Chlorella virus} SCOP: b.40.4.6 d.142.2.1 PDB: 2q2t_A* 2q2u_A* 1p8l_A*
Probab=98.30 E-value=5.9e-06 Score=86.29 Aligned_cols=200 Identities=14% Similarity=0.108 Sum_probs=123.4
Q ss_pred ceEEEEEecceeEEEEEEeCCEEeEEEecCCCCccchhhhhhhhcccCCcccccCCCCceEEEEEEEEeehhhHHHHHHH
Q psy11423 118 IEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197 (655)
Q Consensus 118 ~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~l~~~~~p~~~evRGEv~~~~~~F~~~n~~ 197 (655)
..|++|+|+||+-+.+ +| ++.|| .|+|+|. ..|. ..+.. .+ ...+-||+++...+|+.+...
T Consensus 19 ~~~~~E~K~DG~R~~~---~g---~l~SR----~g~~~t~--p~l~---~~~~~--~~-~~iLDGElv~~~~~F~~l~~~ 80 (297)
T 1fvi_A 19 FPCLATPKIAGIRSVK---QT---QMLSR----TFKPIRN--SVMN---RLLTE--LL-PEGSDGEISIEGATFQDTTSA 80 (297)
T ss_dssp SSEEEEECCCSEEEEE---SS---SEECT----TSCBCSC--HHHH---HHHHH--HS-CTTEEEEEECTTSCHHHHHHH
T ss_pred CcEEEEeeEeeeeEEe---cC---EEECC----CCcccCc--HHHH---HHHHh--cC-CeeEEEEEEECCCCHHHHHHH
Confidence 4699999999999876 88 78999 6888985 2111 11110 12 356889999988888876443
Q ss_pred HHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecccccCCCCCCCHHHHHHHHHhC----C-------CCCCC-
Q psy11423 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKI----G-------LSICG- 265 (655)
Q Consensus 198 ~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~~~~~~~~~e~l~~L~~~----G-------F~~~~- 265 (655)
+++.++. ...++.|++|++...+ . .....+..+.|+++ + +.+++
T Consensus 81 -------------------~~~~~~~--~~~~~~~~vFDll~l~-~--~~pl~eRr~~L~~~~~~~~~~~~~~~i~~~~~ 136 (297)
T 1fvi_A 81 -------------------VMTGHKM--YNAKFSYYWFDYVTDD-P--LKKYIDRVEDMKNYITVHPHILEHAQVKIIPL 136 (297)
T ss_dssp -------------------HHSCC------CCEEEEEEEECSSC-T--TSCHHHHHHHHHHHHHHCGGGGGCSSEEEEEC
T ss_pred -------------------hccCCCC--CccceEEEEEeccCCC-C--CCCHHHHHHHHHHHHhhcCCccccceEEEcCc
Confidence 2222222 2357999999998532 2 35677777777665 1 11122
Q ss_pred CceeeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCC----CceEeecCCcceeeEEEEEEEEe-
Q psy11423 266 EYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAP----RFALAYKFLSKEALTKIKAINIQ- 340 (655)
Q Consensus 266 ~~~~~~~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~P----rwaiA~Kf~~~~~~T~v~~I~~q- 340 (655)
....+.+.+++.++++...+ -..+|+|+|--+..++- | +.+ .| +=+| +.......|.+..+-
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~------~g~EGlv~K~~ds~Y~~--G---Rs~~~~g~w-lK~K-~~~~~d~vVig~~~g~ 203 (297)
T 1fvi_A 137 IPVEINNITELLQYERDVLS------KGFEGVMIRKPDGKYKF--G---RSTLKEGIL-LKMK-QFKDAEATIISMTALF 203 (297)
T ss_dssp CCEEECSHHHHHHHHHHHHH------TTCCSEEEECTTCCCCS--S---BCCTTTTSS-EEEC-CCEEEEEEEEEEEESC
T ss_pred ceEecCCHHHHHHHHHHHHH------CCCcEEEEECCCCCcCC--C---CCCCCCCCe-EEEC-CCCCEEEEEEEEEeCc
Confidence 02234688999998887643 34699999987655442 3 333 45 3455 345678888888886
Q ss_pred --------------------ecC--cceeeeEEEEEEEEECCEEEEEeeCCCHHHHHh
Q psy11423 341 --------------------IGR--TGIITPVALLKPVLIDGITITRATLHNESEIYR 376 (655)
Q Consensus 341 --------------------vGR--TG~itPvA~lePV~l~G~tVsratLhN~~~i~~ 376 (655)
-|| +|.+--+.. ...|..+.-.|..+.+..++
T Consensus 204 ~~~~~~~~~~~g~~~r~~~~~G~~~~g~~g~ll~----~~~g~~~~vgtGftd~~~~~ 257 (297)
T 1fvi_A 204 KNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEV----DYDGVVFSIGTGFDADQRRD 257 (297)
T ss_dssp C-------------------CCCTTCCCEEEEEE----CSTTCCEEECSSCCHHHHHH
T ss_pred cccccccccccccccccccCCCcccCCcEEEEEE----ccCCeEEEECCCCCHHHHHH
Confidence 665 454322211 11265554448888887775
No 23
>1vs0_A Putative DNA ligase-like protein RV0938/MT0965; OB fold, nucleotidyl transferase, structural genomic protein structure initiative; HET: APK MSE; 2.40A {Mycobacterium tuberculosis}
Probab=98.14 E-value=3.3e-05 Score=81.05 Aligned_cols=203 Identities=15% Similarity=0.158 Sum_probs=120.2
Q ss_pred ceEEEEEecceeEEEEEEeCCEEeEEEecCCCCccchhhhhhhhcccCCcccccCCCCceEEEEEEEEee----hhhHHH
Q psy11423 118 IEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIY----KKDFIK 193 (655)
Q Consensus 118 ~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~l~~~~~p~~~evRGEv~~~----~~~F~~ 193 (655)
..|++|+|.||.-+.+...+|. +++.|| .|+|+|+....|..+-..++ +....+-||+++. ..+|+.
T Consensus 25 ~~~~~E~K~DG~R~~~~~~~g~-v~l~SR----~g~~~t~~fPel~~~~~~l~----~~~~iLDGElv~~d~~g~~~F~~ 95 (310)
T 1vs0_A 25 SQWAFEGXWDGYRLLVEADHGA-VRLRSR----SGRDVTAEYPQLRALAEDLA----DHHVVLDGEAVVLDSSGVPSFSQ 95 (310)
T ss_dssp TTEEEEEECCSEEEEEEEETTE-EEEEET----TCCBCGGGCGGGHHHHHHTT----TCEEEEEEEEECBCTTSCBCHHH
T ss_pred CCEEEEEccCcEEEEEEEECCE-EEEEcC----CCCCchhhchhHHHHHHhCC----CccEEEeeEEEEECCCCCcCHHH
Confidence 3699999999999999888787 689999 68899986654433222221 2478999999994 346665
Q ss_pred HHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecccccCCCC-CCCHHHHHHHHHhC----CCCCCCCce
Q psy11423 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM-PSSHSELLNWYQKI----GLSICGEYS 268 (655)
Q Consensus 194 ~n~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~~~~-~~~~~e~l~~L~~~----GF~~~~~~~ 268 (655)
+... +++ ..+.|++|++...++.++ ..+..+..+.|.++ -+.+++..
T Consensus 96 l~~r-------------------~~~--------~~~~~~vFDll~~~g~~l~~~pl~eRr~~L~~~~~~~~i~~~~~~- 147 (310)
T 1vs0_A 96 MQNR-------------------GRD--------TRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELL- 147 (310)
T ss_dssp HHTC-------------------CTT--------SCCEEEEEEEEEETTEECTTSCHHHHHHHHHHHHHHSCCCCCCCC-
T ss_pred HHhh-------------------ccC--------CcEEEEEEEeEEECCcCcccCCHHHHHHHHHHhccCCcEEECccC-
Confidence 4210 010 148999999987554332 24677777777654 23333322
Q ss_pred eeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCcceeeEEEEEEEEeecC-ccee
Q psy11423 269 VLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGR-TGII 347 (655)
Q Consensus 269 ~~~~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~~~~T~v~~I~~qvGR-TG~i 347 (655)
. .++.++++...+ -..+|+|+|--+..++- |. +.+.| +=+| +.......|.+..+.-|| +|.+
T Consensus 148 -~---~~~~~~~~~~~~------~g~EGlv~K~~ds~Y~~--G~--Rs~~W-lK~K-~~~~~D~vv~G~~~g~G~r~g~~ 211 (310)
T 1vs0_A 148 -P---GDGAQAFACSRK------HGWEGVIAKRRDSRYQP--GR--RCASW-VKDK-HWNTQEVVIGGWRAGEGGRSSGV 211 (310)
T ss_dssp -C---SSHHHHHHHHHH------TTCCEEEEEETTCCCCT--TC--EEEEE-EEEE-SSEEEEEEEEEEEC--------C
T ss_pred -c---hHHHHHHHHHHH------cCCceEEEeCCCCCcCC--CC--cChHH-hccc-hheEEEEEEEEEEcCCCCccCcc
Confidence 1 135566655432 34799999987755542 21 23333 3455 335667788777766654 3555
Q ss_pred ee--EEEEEEEEECC-EEEEEe-eCCCHHHHHh
Q psy11423 348 TP--VALLKPVLIDG-ITITRA-TLHNESEIYR 376 (655)
Q Consensus 348 tP--vA~lePV~l~G-~tVsra-tLhN~~~i~~ 376 (655)
.. ++..++ +| ..|.++ |..+.+..++
T Consensus 212 g~lllg~~d~---~g~~~vgkvgtGftd~~~~~ 241 (310)
T 1vs0_A 212 GSLLMGIPGP---GGLQFAGRVGTGLSERELAN 241 (310)
T ss_dssp CEEEEEEEET---TEEEEEEEECSSCCHHHHHH
T ss_pred ceEEEEEEcC---CCCEEEEEECCCCCHHHHHH
Confidence 43 233322 23 345566 7788777766
No 24
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=98.14 E-value=2.9e-07 Score=92.15 Aligned_cols=50 Identities=30% Similarity=0.365 Sum_probs=0.0
Q ss_pred hCCCCccHHHHHHHHHhCCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHhc
Q psy11423 526 LGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576 (655)
Q Consensus 526 lgIpgIG~~~Ak~L~~~fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f~ 576 (655)
.+|||||++++++|+++|+|+++|..|+.++|.++ |||+++|++|++||+
T Consensus 176 ~~IpGIG~k~ak~Ll~~FGSl~~i~~As~eeL~~V-GIG~~~A~~I~~~f~ 225 (226)
T 3c65_A 176 DDIPGVGEKRKKALLNYFGSVKKMKEATVEELQRA-NIPRAVAEKIYEKLH 225 (226)
T ss_dssp ---------------------------------------------------
T ss_pred cccCCCCHHHHHHHHHHhCCHHHHHhCCHHHHHHc-CCCHHHHHHHHHHhh
Confidence 38999999999999999999999999999999999 999999999999986
No 25
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=98.12 E-value=1.1e-06 Score=87.38 Aligned_cols=49 Identities=22% Similarity=0.388 Sum_probs=46.8
Q ss_pred hCCCCccHHHHHHHHHhCCCHHHHHhcCHHHHhcCCCCCH-HHHHHHHHHhc
Q psy11423 526 LGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGS-TTVKAFIKFIN 576 (655)
Q Consensus 526 lgIpgIG~~~Ak~L~~~fgsl~~l~~as~eeL~~i~GIG~-~~A~~I~~~f~ 576 (655)
.+|||||++++++|+++|+|+++|..|+.++|.++ ||+ ++|++|++||+
T Consensus 171 dgIpGIG~k~ak~Ll~~FgSl~~i~~As~EeL~~V--IG~~~~A~~I~~~f~ 220 (220)
T 2nrt_A 171 DNVPGIGPIRKKKLIEHFGSLENIRSASLEEIARV--IGSTEIARRVLDILG 220 (220)
T ss_dssp TTSTTCCHHHHHHHHHHHCSHHHHHTSCHHHHHHH--HTCHHHHHHHHHHC-
T ss_pred cCCCCcCHHHHHHHHHHcCCHHHHHhCCHHHHHHH--hChHHHHHHHHHHhC
Confidence 48999999999999999999999999999999999 999 99999999984
No 26
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=98.11 E-value=2.5e-06 Score=85.05 Aligned_cols=52 Identities=23% Similarity=0.451 Sum_probs=50.5
Q ss_pred CCCCccHHHHHHHHHhCCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHhcCh
Q psy11423 527 GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQP 578 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f~~~ 578 (655)
+|||||+++|++|+++|++++++..++.++|.+++|||+++|++|++||+++
T Consensus 166 ~i~gVg~~~a~~Ll~~fgs~~~l~~a~~e~L~~v~GiG~~~a~~i~~~~~~~ 217 (219)
T 2bgw_A 166 SFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKILMTP 217 (219)
T ss_dssp TSTTCCHHHHHHHHHHHSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHHHSC
T ss_pred cCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999865
No 27
>3gde_A DNA ligase; DNA-binding domain, adenylation domain, OB-fold domain, ATP-binding, cell cycle, cell division, DNA damage, DNA recombination; HET: DNA; 2.30A {Archaeoglobus fulgidus}
Probab=98.08 E-value=4.7e-05 Score=86.03 Aligned_cols=215 Identities=19% Similarity=0.170 Sum_probs=136.8
Q ss_pred eEEEEEecceeEEEEEEeCCEEeEEEecCCCCccchhhhhhhhccc-CCcccccCCCCceEEEEEEEEeehh----hHHH
Q psy11423 119 EYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHK-IPLVLNIKYPPELLEVRCEVLIYKK----DFIK 193 (655)
Q Consensus 119 ~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~-iP~~l~~~~~p~~~evRGEv~~~~~----~F~~ 193 (655)
.|++|+|+||.-+.+.+.+|. ++..||+ |+|+|+....|.. +...+ |..+.+-||++.-.. .|+.
T Consensus 246 ~~~~E~K~DG~R~qi~~~g~~-v~l~SR~----g~d~t~~fPel~~~~~~~l-----~~~~iLDGElv~~~~g~~~~F~~ 315 (558)
T 3gde_A 246 TAAVEWKFDGSRVQVHWDGSR-VTIYSRR----LENVTNALPDIVEEIKKSV-----KPGVILDGEVIAVKEGKPMPFQH 315 (558)
T ss_dssp SEEEEEECSSEEEEEEECSSC-CEEEETT----CCBCGGGCHHHHHHHHHHB-----CSSEEEEEEEEEEETTEEECHHH
T ss_pred ceEEEEeEeeEEEEEEEeCCE-EEEEcCC----CCcccccchHHHHHHHhhC-----CCCeEEEeEEEEcCCCcCCCHHH
Confidence 599999999999998776665 6999994 9999987654432 12123 334899999999632 6876
Q ss_pred HHHHHHHcCCCCCCChhhhHHhHhhhcCc--ccccccceEEEEEecccccCCCC-CCCHHHHHHHHHhCCCCCCCC----
Q psy11423 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNP--KINKNKILHFFAHGVGELRGMNM-PSSHSELLNWYQKIGLSICGE---- 266 (655)
Q Consensus 194 ~n~~~~~~g~~~f~NpRN~aaG~lr~~d~--~~~~~r~L~f~~y~~~~~~~~~~-~~~~~e~l~~L~~~GF~~~~~---- 266 (655)
+-... +++.+ ......++.|++|++...++ ++ ..+..+..+.|.++--. +..
T Consensus 316 L~~r~-------------------~~~~~~~~~~~~~pv~~~vFDlL~l~G-~l~~~pl~eRr~~L~~~~~~-~~~i~~~ 374 (558)
T 3gde_A 316 VLRRF-------------------RRKHDVAKMVEKIPLEAHFFDILYHDG-ECIDLPLRERRKLLESAVNE-SEKIKLA 374 (558)
T ss_dssp HHHHH-------------------HC--CTHHHHHHSCEEEEEEEEEEESS-BCTTSBHHHHHHHHHHHBCC-CSSEEEC
T ss_pred HHHHh-------------------ccccchhhHhhcCCeEEEEEEEEeeCC-CccCCCHHHHHHHHHHhcCC-CCeEEEe
Confidence 64321 11100 00123468999999987655 43 25788888888876322 221
Q ss_pred -ceeeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCcceeeEEEEEEEEeecC-c
Q psy11423 267 -YSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGR-T 344 (655)
Q Consensus 267 -~~~~~~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~~~~T~v~~I~~qvGR-T 344 (655)
...+.+.+++.++++...+ -..+|+|+|--+..++ .|. +...| +=+|-........|.+..|--|| +
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~------~g~EGlv~K~~ds~Y~--~G~--Rs~~W-lK~K~~~~t~D~vViG~~~g~Gkr~ 443 (558)
T 3gde_A 375 KQIVTDSVDEVRKMYDEAIS------AGHEGVMIKLPSSPYI--PGK--RGKNW-LKVKAIMETLDLVVVGGEWGEGKRS 443 (558)
T ss_dssp CEEEESCHHHHHHHHHHHHH------TTCCEEEEECTTCBCC--TTC--EEEEE-EEEESSCCCEEEEEEEEEECCTTGG
T ss_pred eeEecCCHHHHHHHHHHHHH------cCCceeEEecCCCCCC--CCC--cCCce-EEEecccceEEEEEEEEEeCCCCcc
Confidence 1245788999998887653 2468999997665444 121 23334 34453346788899999998765 5
Q ss_pred ceeee--EEEEEEEEECCE--EEEEe-eCCCHHHHHhc
Q psy11423 345 GIITP--VALLKPVLIDGI--TITRA-TLHNESEIYRK 377 (655)
Q Consensus 345 G~itP--vA~lePV~l~G~--tVsra-tLhN~~~i~~~ 377 (655)
|.+.. ++..+|- +|. +|-++ |..+-+..+++
T Consensus 444 g~~g~lllg~~d~~--~g~l~~vgkvgsGftd~~~~~l 479 (558)
T 3gde_A 444 HWLSSFELACLDPV--TGKLLKVGRVATGFTEEDLEEL 479 (558)
T ss_dssp GSEEEEEEEEECTT--TCCEEEEEEECSSCCHHHHHHH
T ss_pred CccceEEEEEeeCC--CCEEEEEeeeCCCCCHHHHHHH
Confidence 56654 2333321 243 45565 78888887764
No 28
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=98.04 E-value=6.2e-06 Score=87.42 Aligned_cols=100 Identities=15% Similarity=0.276 Sum_probs=76.7
Q ss_pred cccC-CCCHHHHHHHHHcCCCCChHHHhc----CChhhhccccCCcHHHHHHHHHHHHHhcccchhHHHHHhCCCCccHH
Q psy11423 460 MNII-GLGKKMIEKLVNANIVVTAVDLYK----INFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGET 534 (655)
Q Consensus 460 l~I~-GLG~k~i~~L~~~g~I~~i~DL~~----L~~~~L~~l~GfG~Ksa~nll~~I~~sk~~~l~r~L~algIpgIG~~ 534 (655)
|-++ |+|..|...|-..- .++..+-. ...++|...+|+|+|.+..+..++ .+| -.|||||+.
T Consensus 413 LAvkfG~g~eTAe~L~~~a--gr~l~leqi~rdrEvgkL~SVpGikek~sktL~eqe---------amL--tAIaGIGp~ 479 (685)
T 4gfj_A 413 LTKKEGVGRKTAERLLRAF--GNPERVKQLAREFEIEKLASVEGVGERVLRSLVPGY---------ASL--ISIRGIDRE 479 (685)
T ss_dssp HHTSTTCCHHHHHHHHHHH--SSHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHSTTH---------HHH--HTSTTCCHH
T ss_pred hhhhcCCchHHHHHHHHHh--cchhhhhhhhhhhhhhcccccccchhhhhcccccce---------eee--eccCCCCHH
Confidence 3444 88888888775432 12222222 456789999999999887776651 111 279999999
Q ss_pred HHHHHHHhCCCHHHHHhcCHHHHhcCCCCCHHHHHHHHH
Q psy11423 535 TAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIK 573 (655)
Q Consensus 535 ~Ak~L~~~fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~ 573 (655)
+|++|+++|||+++++.|+.++|.. +|||++.|..|..
T Consensus 480 tAeRLLEkFGSVe~Vm~AteDELRe-dGIGekqarrI~g 517 (685)
T 4gfj_A 480 RAERLLKKYGGYSKVREAGVEELRE-DGLTDAQIRELKG 517 (685)
T ss_dssp HHHHHHHHHTSHHHHHHSCHHHHHH-TTCCHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHhCCHHHHHH-ccccHHHHHHHhh
Confidence 9999999999999999999999977 9999999998875
No 29
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria phage T7} SCOP: b.40.4.6 d.142.2.1
Probab=97.98 E-value=0.00011 Score=78.32 Aligned_cols=230 Identities=16% Similarity=0.067 Sum_probs=131.7
Q ss_pred eEEEEEecceeEEEEEEe-CCEEeEEEecCCCCccchhhhhhhhcccCCc---cccc--CCCCceEEEEEEEEeehhhHH
Q psy11423 119 EYIAELKFDGIAVNLRYE-YGYLKQASTRGDGNIGENITTNIHIIHKIPL---VLNI--KYPPELLEVRCEVLIYKKDFI 192 (655)
Q Consensus 119 ~~~~e~KiDGlsi~l~Y~-~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~---~l~~--~~~p~~~evRGEv~~~~~~F~ 192 (655)
.|++|+|+||.-+.+.+. +|. ++..||. |.|+++-.......|. .+.. ...|..+.+-||+++....|+
T Consensus 27 ~~~~E~K~DG~R~~~~~~~~g~-v~l~SR~----g~~~~~l~~~~~~~p~~~~~l~~~~~~~~~~~iLDGElv~~~~~F~ 101 (348)
T 1a0i_A 27 YLIAEIKYDGVRGNICVDNTAN-SYWLSRV----SKTIPALEHLNGFDVRWKRLLNDDRCFYKDGFMLDGELMVKGVDFN 101 (348)
T ss_dssp SEEEEECCCSEEEEEEEETTSE-EEEECTT----SCBCGGGGGGCEECHHHHHHHHSTTCCCTTEEEEEEEEEESSSCTT
T ss_pred cEEEEEeeceeEEEEEEeCCCe-EEEEcCC----CCCCcchhhhhcccchHHHHHhhhhccCCCCEEEEEEEEEeCCCHH
Confidence 699999999999999886 565 6899994 5666653221111111 1110 024668999999999766777
Q ss_pred HHHHHHHHcC--C----CCCCChhhhHHhHhhhcCcc---cccccceEEEEEeccccc----CCCC----CCCHHHHHHH
Q psy11423 193 KLNKYRYHLG--L----KKFTNPRNAAAGILRQLNPK---INKNKILHFFAHGVGELR----GMNM----PSSHSELLNW 255 (655)
Q Consensus 193 ~~n~~~~~~g--~----~~f~NpRN~aaG~lr~~d~~---~~~~r~L~f~~y~~~~~~----~~~~----~~~~~e~l~~ 255 (655)
.+........ . ..+.+-|... ...+. .....++.|++|++...+ +.++ .....+..+.
T Consensus 102 ~l~~~~~~k~~~~k~v~~~~~~~r~~~-----~~~~~i~~~~~~~~~~~~vFDll~l~~~~~G~~l~~~~~~pl~eRr~~ 176 (348)
T 1a0i_A 102 TGSGLLRTKWTDTKNQEFHEELFVEPI-----RKKDKVPFKLHTGHLHIKLYAILPLHIVESGEDCDVMTLLMQEHVKNM 176 (348)
T ss_dssp THHHHHHCCSCCSSBSSCC-------------CCCSCCCCCBCTTTEEEEEEEEEEHHHHHHCCCEEEEHHHHHHHHHHH
T ss_pred HHHHHhccccccccccccccccccccc-----ccccccccccccCcEEEEEEeeEeeCCCCCCccchhhccCCHHHHHHH
Confidence 6544322100 0 0011111100 00100 123567999999998754 4332 1245566666
Q ss_pred HHhC--CCC-----CCCCceeeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCcc
Q psy11423 256 YQKI--GLS-----ICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSK 328 (655)
Q Consensus 256 L~~~--GF~-----~~~~~~~~~~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~ 328 (655)
|.++ .++ +++ ...+.+.+++.++++...+ -..+|+|+|--+..++. |..+ .|- =+| +..
T Consensus 177 L~~l~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~------~g~EGlv~K~~ds~Y~~--Grr~---~wl-K~K-~~~ 242 (348)
T 1a0i_A 177 LPLLQEYFPEIEWQAAE-SYEVYDMVELQQLYEQKRA------EGHEGLIVKDPMCIYKR--GKKS---GWW-KMK-PEN 242 (348)
T ss_dssp HHHHHHHCTTSEEEECC-EEEESSHHHHHHHHHHHHT------TTCCCEEEECTTCEECS--EEEE---EEE-EES-CCE
T ss_pred HHHHhhhCCCCeEEEec-cEecCCHHHHHHHHHHHHH------cCCceEEEeCCCCCCCC--CCcc---CcE-EEe-ecc
Confidence 6553 121 222 2345678899998876643 33599999997765552 3221 253 555 445
Q ss_pred eeeEEEEEEEEeecC---cceeeeEEEEEEEEECCEEEEEeeCCCHHHHHh
Q psy11423 329 EALTKIKAINIQIGR---TGIITPVALLKPVLIDGITITRATLHNESEIYR 376 (655)
Q Consensus 329 ~~~T~v~~I~~qvGR---TG~itPvA~lePV~l~G~tVsratLhN~~~i~~ 376 (655)
.....|.+..|--|| +|.+....-.. =+|.-+ .+|..+.+..++
T Consensus 243 ~~D~vViG~~~g~g~r~~~g~~~~~~~~~---~~g~~~-~gtGftd~~~~~ 289 (348)
T 1a0i_A 243 EADGIIQGLVWGTKGLANEGKVIGFEVLL---ESGRLV-NATNISRALMDE 289 (348)
T ss_dssp EEEEEEEEEECCCTTTSSCSSCCEEEEEC---TTSCEE-EEBCCCSHHHHH
T ss_pred cEEEEEEEEEeCCCCccCCceEEEEEEEe---CCCCEE-EccCCCHHHHHH
Confidence 788899999998887 57665533211 145433 478888776554
No 30
>2cfm_A Thermostable DNA ligase; protein-nucleotide complex, cell cycle, cell division, DNA damage, DNA recombination, DNA repair, DNA replication; HET: AMP; 1.8A {Pyrococcus furiosus} PDB: 3rr5_A*
Probab=97.94 E-value=0.00012 Score=82.76 Aligned_cols=217 Identities=17% Similarity=0.127 Sum_probs=135.5
Q ss_pred eEEEEEecceeEEEEEEeCCEEeEEEecCCCCccchhhhhhhhccc-CCcccccCCCC-ceEEEEEEEEeeh-----hhH
Q psy11423 119 EYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHK-IPLVLNIKYPP-ELLEVRCEVLIYK-----KDF 191 (655)
Q Consensus 119 ~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~-iP~~l~~~~~p-~~~evRGEv~~~~-----~~F 191 (655)
.|++|+|.||.-+.+.+.+|. ++..||+ |+|+|+....+.. +...+ | ..+.+-||+++-. ..|
T Consensus 243 ~~~~E~K~DG~R~~i~~~~g~-v~l~SR~----g~~~t~~fPel~~~~~~~l-----~~~~~iLDGElv~~d~~g~~~~F 312 (561)
T 2cfm_A 243 EAEFEIKYDGARVQVHKDGSK-IIVYSRR----LENVTRAIPEIVEALKEAI-----IPEKAIVEGELVAIGENGRPLPF 312 (561)
T ss_dssp CEEEEEECCSEEEEEEEETTE-EEEECTT----CCBCGGGCHHHHHHHHHHB-----CSSEEEEEEEEEEBCTTSSBCCT
T ss_pred cEEEEEeEceEEEEEEEECCE-EEEEeCC----CCCchhhhhhHHHHHHHhC-----CCcceEeeeEEEEEcCCCcccCH
Confidence 699999999999999888886 6899995 8999976544321 11122 3 4689999999963 157
Q ss_pred HHHHHHHHHcCCCCCCChhhhHHhHhhhcCcc--cccccceEEEEEecccccCCCC-CCCHHHHHHHHHhCCCCCCC---
Q psy11423 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPK--INKNKILHFFAHGVGELRGMNM-PSSHSELLNWYQKIGLSICG--- 265 (655)
Q Consensus 192 ~~~n~~~~~~g~~~f~NpRN~aaG~lr~~d~~--~~~~r~L~f~~y~~~~~~~~~~-~~~~~e~l~~L~~~GF~~~~--- 265 (655)
+.+.... +++.+. .....++.|++|++...++.++ ..+..+..+.|.++--+...
T Consensus 313 ~~L~~r~-------------------~~~~~~~~~~~~~~~~~~vFDlL~l~g~~l~~~pl~eRr~~L~~~~~~~~~i~~ 373 (561)
T 2cfm_A 313 QYVLRRF-------------------RRKHNIEEMMEKIPLELNLFDVLYVDGQSLIDTKFIDRRRTLEEIIKQNEKIKV 373 (561)
T ss_dssp HHHHHHH-------------------HCCSCHHHHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCCSSEEE
T ss_pred HHHHHHh-------------------hcccchhhhcccCceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhCcCCcEEE
Confidence 7654431 111110 1123479999999987654332 25788888888876322111
Q ss_pred -CceeeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCcceeeEEEEEEEEeecC-
Q psy11423 266 -EYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGR- 343 (655)
Q Consensus 266 -~~~~~~~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~~~~T~v~~I~~qvGR- 343 (655)
....+.+.+++.++++...+ -..+|+|+|--+..++- |. +...| +=+|-........|.+..|--||
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~------~g~EGlv~K~~ds~Y~~--G~--Rs~~W-lK~K~~~dt~D~vViG~~~g~Gkr 442 (561)
T 2cfm_A 374 AENLITKKVEEAEAFYKRALE------MGHEGLMAKRLDAVYEP--GN--RGKKW-LKIKPTMENLDLVIIGAEWGEGRR 442 (561)
T ss_dssp CCEEEESCHHHHHHHHHHHHH------TTCCEEEEECTTCCCCT--TC--EEEEE-EEECSSCCCEEEEEEEEEECSGGG
T ss_pred eeeEEcCCHHHHHHHHHHHHH------cCCceeEEeCCCCCCCC--CC--cCCCe-EEEcccCcceeEEEEEEEeCCCCC
Confidence 12246788999998877653 34799999987655542 21 22334 34443334678899898887765
Q ss_pred cceeeeE--EEEEEEEECCE--EEEE-eeCCCHHHHHhc
Q psy11423 344 TGIITPV--ALLKPVLIDGI--TITR-ATLHNESEIYRK 377 (655)
Q Consensus 344 TG~itPv--A~lePV~l~G~--tVsr-atLhN~~~i~~~ 377 (655)
+|.++.. +..+|= +|. +|.+ .|..+-+..+++
T Consensus 443 ~g~~g~lllg~~d~~--~~~~~~vgkvgsGftd~~~~~l 479 (561)
T 2cfm_A 443 AHLFGSFILGAYDPE--TGEFLEVGKVGSGFTDDDLVEF 479 (561)
T ss_dssp TTSEEEEEEEEECTT--TCCEEEEEEECSSCCHHHHHHH
T ss_pred CCccceEEEEEEeCC--CCeEEEEeEeCCCCCHHHHHHH
Confidence 5655542 233220 132 3444 367777776653
No 31
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=97.93 E-value=1.2e-05 Score=78.69 Aligned_cols=73 Identities=12% Similarity=0.160 Sum_probs=59.2
Q ss_pred hhccccCCcHHHHHHHHHHHHHhcccchhHHHHHhCCCCccHHHHHHHHHhCCC---HHHHHhcCHHHHhcCCCCCHHHH
Q psy11423 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN---LECMFKATEEQLLNIPKIGSTTV 568 (655)
Q Consensus 492 ~L~~l~GfG~Ksa~nll~~I~~sk~~~l~r~L~algIpgIG~~~Ak~L~~~fgs---l~~l~~as~eeL~~i~GIG~~~A 568 (655)
+-..|-||..+....+.. .| ..|||||+++|.+|+++|++ .+++..++.++|.++||||+++|
T Consensus 55 da~~l~gf~~~~ek~~f~------------~L--~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A 120 (191)
T 1ixr_A 55 EGLSLYGFPDEENLALFE------------LL--LSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLA 120 (191)
T ss_dssp SCCCEEEESSHHHHHHHH------------HH--HSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHH
T ss_pred hhHHhhccCCHHHHHHHH------------HH--hcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHH
Confidence 333477888775543332 22 26999999999999999998 78899999999999999999999
Q ss_pred HHHHHHhcCh
Q psy11423 569 KAFIKFINQP 578 (655)
Q Consensus 569 ~~I~~~f~~~ 578 (655)
++|+..|++.
T Consensus 121 ~rI~~~lk~k 130 (191)
T 1ixr_A 121 ERIALELKGK 130 (191)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHHh
Confidence 9999988653
No 32
>3qwu_A DNA ligase; structural genomics, PSI-2, midwest center for structural GE MCSG; HET: DNA ADN; 2.35A {Aquifex aeolicus}
Probab=97.92 E-value=8.6e-05 Score=79.12 Aligned_cols=143 Identities=21% Similarity=0.205 Sum_probs=98.6
Q ss_pred ceEEEEEecceeEEEEEEeCCEEeEEEecCCCCccchh---hhhhhhcccCCcccccCCCCceEEEEEEEEeehhhHHHH
Q psy11423 118 IEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENI---TTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194 (655)
Q Consensus 118 ~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDv---T~n~~~i~~iP~~l~~~~~p~~~evRGEv~~~~~~F~~~ 194 (655)
-.|++|.|+||-.+.+.|-+|+ +.|.||| |.. + |..++.+... .+.. ++| .+.+-||++.+...|.
T Consensus 73 ~~~~veEKLDG~NVRi~~~dG~-ilA~TRg-G~i---cP~tT~r~~~~~~~--~f~~-~~P-~l~LdGEl~g~~npy~-- 141 (370)
T 3qwu_A 73 APFWVEEKVDGYNTRIFKYGDN-YYALSRG-GFI---CPFTTDRLPDLIDL--RILD-ENP-DLVICAEVAGPENPYI-- 141 (370)
T ss_dssp SCEEEEEECSSEEEEEEEETTE-EEEECTT-SCB---CHHHHHHHHHHCCC--HHHH-HCT-TEEEEEEEECTTCSSC--
T ss_pred CcEEEEEeeCCeEEEEEEECCE-EEEEcCC-Ccc---cCcchhhhhhhcCc--hhhh-cCC-CeEEEEEEEcCCCCcc--
Confidence 3799999999999999889998 5899997 322 2 4444444322 2322 244 6999999998765542
Q ss_pred HHHHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecccccCCCCCCCHHHHHHHHHhCCCCCCCCcee--eC-
Q psy11423 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSV--LS- 271 (655)
Q Consensus 195 n~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~~~~~~~~~e~l~~L~~~GF~~~~~~~~--~~- 271 (655)
.+..+| ...++.|++|+|.+.+... +-+..+.+++|.++|++.++.... +.
T Consensus 142 ------~~s~~y-------------------~~~~i~F~VFDV~d~~~~~-~L~~~eR~~ll~~~~lp~V~ii~~~~~~~ 195 (370)
T 3qwu_A 142 ------EESPPY-------------------VKEDVQLFVFDFMKKNEQG-FLSQEEKMELIEKYNLPHVEILGRFTASE 195 (370)
T ss_dssp ------SCCCTT-------------------CCSSCEEEEEEEEETTCCS-CCCHHHHHHHHHHHTCCBCCEEEEECSSH
T ss_pred ------ccCCcc-------------------cccCceEEEEeCccccCCC-cCCHHHHHHHHHHCCCCCccEEEEeCCCC
Confidence 011111 1347999999998753322 358899999999999998875433 34
Q ss_pred -CHHHHHHHHHHHHHhhcCCCCccceEEEEECC
Q psy11423 272 -GVNKLIEFYKKINIKRFNLPYEIDGVVYKINC 303 (655)
Q Consensus 272 -~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~~ 303 (655)
+.+++.++++++.+. .--|||+|-.+
T Consensus 196 ~~~~~l~~~l~~l~~~------g~EGVVlK~~~ 222 (370)
T 3qwu_A 196 EGIKKIKEILKRFNEE------GREGVVFKEDS 222 (370)
T ss_dssp HHHHHHHHHHHHHHHT------TCCEEEEEESS
T ss_pred CCHHHHHHHHHHHHhC------CCcEEEEecCc
Confidence 466777777777643 35799999876
No 33
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=97.83 E-value=1.4e-05 Score=79.07 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=59.5
Q ss_pred hhhccccCCcHHHHHHHHHHHHHhcccchhHHHHHhCCCCccHHHHHHHHHhCCC---HHHHHhcCHHHHhcCCCCCHHH
Q psy11423 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN---LECMFKATEEQLLNIPKIGSTT 567 (655)
Q Consensus 491 ~~L~~l~GfG~Ksa~nll~~I~~sk~~~l~r~L~algIpgIG~~~Ak~L~~~fgs---l~~l~~as~eeL~~i~GIG~~~ 567 (655)
+|-..|-||-.+....+.. .|. .|+|||+++|.+|+++|++ .+++..++.++|.++||||+++
T Consensus 55 eda~~l~gf~~~~ek~~f~------------~L~--~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~ 120 (203)
T 1cuk_A 55 EDAQLLYGFNNKQERTLFK------------ELI--KTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKT 120 (203)
T ss_dssp TTEEEEEEESSHHHHHHHH------------HHH--HSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHH
T ss_pred ehhhhhhccCCHHHHHHHH------------HHh--cCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHH
Confidence 3334488888776655443 222 3999999999999999999 8899999999999999999999
Q ss_pred HHHHHHHhc
Q psy11423 568 VKAFIKFIN 576 (655)
Q Consensus 568 A~~I~~~f~ 576 (655)
|++|+..|+
T Consensus 121 A~rI~~elk 129 (203)
T 1cuk_A 121 AERLIVEMK 129 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998875
No 34
>2hiv_A Thermostable DNA ligase; ATP-dependent, open conformation; 2.05A {Sulfolobus solfataricus} PDB: 2hix_A*
Probab=97.82 E-value=0.00018 Score=82.42 Aligned_cols=217 Identities=14% Similarity=0.100 Sum_probs=134.7
Q ss_pred eEEEEEecceeEEEEEEeCCEEeEEEecCCCCccchhhhhhhhccc-CCcccccCCCC-ceEEEEEEEEeehh------h
Q psy11423 119 EYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHK-IPLVLNIKYPP-ELLEVRCEVLIYKK------D 190 (655)
Q Consensus 119 ~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~-iP~~l~~~~~p-~~~evRGEv~~~~~------~ 190 (655)
.|++|+|+||.-+.+.+.+|. ++..|| .|+|+|+....+.. +...+ | ..+.+-||+++-.. .
T Consensus 274 ~~~~E~K~DG~R~qi~~~g~~-v~l~SR----~g~~~t~~fP~l~~~~~~~l-----~~~~~iLDGElv~~d~~~g~~l~ 343 (621)
T 2hiv_A 274 NAIVDYKYDGERAQIHKKEDK-IFIFSR----RLENITSQYPDVVDYVSKYI-----EGKEFIIEGEIVAIDPESGEMRP 343 (621)
T ss_dssp CEEEEEECSSEEEEEEEETTE-EEEECT----TCCBCGGGCHHHHHHHHHHB-----CCSSEEEEEEEEEBCTTTCCBCC
T ss_pred cEEEEEEEcceeEEEEEcCCE-EEEEcC----CCcCcHhhhhhHHHHHHHhC-----CCcCeEEeEEEEEeecCCCCcCC
Confidence 699999999999999887776 699999 58999976554321 11122 3 46899999999641 5
Q ss_pred HHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecccccCCCC-CCCHHHHHHHHHhCCCCCCCC---
Q psy11423 191 FIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM-PSSHSELLNWYQKIGLSICGE--- 266 (655)
Q Consensus 191 F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~~~~-~~~~~e~l~~L~~~GF~~~~~--- 266 (655)
|+.+...+.+ .+ +. ......++.|++|++...++.++ ..+..+..+.|.++--+. ..
T Consensus 344 F~~L~~r~~~------~~----~~--------~~~~~~~v~~~vFDlL~l~G~~l~~~pl~eRr~~L~~~~~~~-~~i~~ 404 (621)
T 2hiv_A 344 FQELMHRKRK------SD----IY--------EAIKEYPVNVFLFDLMYYEDVDYTTKPLEARRKLLESIVKPN-DYVKI 404 (621)
T ss_dssp THHHHHHHHC------SC----HH--------HHHHHSCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCC-SSEEE
T ss_pred HHHHhhhccc------cc----hh--------hhcccCceEEEEEeccccCCCccccCCHHHHHHHHHHHhCcC-CcEEE
Confidence 7766433100 00 00 01123479999999987554332 257888888888763221 11
Q ss_pred --ceeeCCHHHHHHHHHHHHHhhcCCCCccceEEEEEC--ChhhhhhhCCCCCCCCceEeecCCc-----ceeeEEEEEE
Q psy11423 267 --YSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKIN--CLSTQKKLGFTSRAPRFALAYKFLS-----KEALTKIKAI 337 (655)
Q Consensus 267 --~~~~~~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~--~~~~~~~lG~ts~~PrwaiA~Kf~~-----~~~~T~v~~I 337 (655)
...+.+.+++.++++...+ -..+|+|+|-- +..++- |. +...| +=+|-.. ......|.+.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~------~g~EGlv~K~~~~ds~Y~~--G~--Rs~~W-lK~K~~~~~~~~dt~D~vViG~ 473 (621)
T 2hiv_A 405 AHHIQANNVEDLKSFFYRAIS------EGGEGVMVKAIGKDAIYQA--GA--RGWLW-IKLKRDYQSEMADTVDLVVVGG 473 (621)
T ss_dssp CCEEEESSHHHHHHHHHHHHH------TTCCEEEEECCSTTCCCCT--TC--EEEEE-EEEETTCTTSSCEEEEEEEEEE
T ss_pred eeeEEeCCHHHHHHHHHHHHh------cCCceEEEEecCCCCCccC--CC--cCCCe-EEEechhccCcCceeEEEEEEE
Confidence 2235688899998887653 34799999986 544431 21 22334 3455433 3678889888
Q ss_pred EEeecC-cceeeeEE--EEEEEEECCE--EEEE-eeCCCHHHHHhc
Q psy11423 338 NIQIGR-TGIITPVA--LLKPVLIDGI--TITR-ATLHNESEIYRK 377 (655)
Q Consensus 338 ~~qvGR-TG~itPvA--~lePV~l~G~--tVsr-atLhN~~~i~~~ 377 (655)
.|--|| +|.++..- ..+|= +|. +|.+ .|..+-+..+++
T Consensus 474 ~~g~Gkr~g~~g~lllg~~d~~--~~~l~~vgkvgtGftd~~~~~l 517 (621)
T 2hiv_A 474 FYGKGKRGGKISSLLMAAYNPK--TDSFESVCKVASGFSDEQLDEL 517 (621)
T ss_dssp EECSGGGTTSEEEEEEEEEETT--TTEEEEEEEECBSCCHHHHHHH
T ss_pred EcCCCCCCCcccceEEEEEeCC--CCeEEEEeeeCCCCCHHHHHHH
Confidence 887764 56665432 33330 133 3444 467777766643
No 35
>1x9n_A DNA ligase I; 5'-adenylated nicked DNA, protein-DNA complex, L complex; HET: DNA DOC AMP; 3.00A {Homo sapiens} SCOP: a.235.1.1 b.40.4.6 d.142.2.1
Probab=97.81 E-value=0.00033 Score=81.03 Aligned_cols=220 Identities=15% Similarity=0.137 Sum_probs=132.6
Q ss_pred ceEEEEEecceeEEEEEE-eCCEEeEEEecCCCCccchhhhhhhhccc-CCcccccCCCCceEEEEEEEEeeh------h
Q psy11423 118 IEYIAELKFDGIAVNLRY-EYGYLKQASTRGDGNIGENITTNIHIIHK-IPLVLNIKYPPELLEVRCEVLIYK------K 189 (655)
Q Consensus 118 ~~~~~e~KiDGlsi~l~Y-~~G~l~~a~TRGdG~~GeDvT~n~~~i~~-iP~~l~~~~~p~~~evRGEv~~~~------~ 189 (655)
..|++|+|.||.-+.+.+ .+|. ++..|| .|+|+|+....+.. ++..+.. -...+.+-||+++-. .
T Consensus 330 ~~~~~E~K~DG~R~qih~~~~g~-v~l~SR----~g~d~t~~fPel~~~l~~~~~~--~~~~~ILDGElV~~d~~~g~~~ 402 (688)
T 1x9n_A 330 AAFTCEYKYDGQRAQIHALEGGE-VKIFSR----NQEDNTGKYPDIISRIPKIKLP--SVTSFILDTEAVAWDREKKQIQ 402 (688)
T ss_dssp SCEEEEEEESSEEEEEEECTTSC-EEEECT----TSCBCTTTCHHHHHTSGGGBCT--TCCCEEEEEEEEEECTTTCSBC
T ss_pred CeEEEEEccccEeEEEEEcCCCe-EEEEeC----CCCcccccchHHHHHHHHhhcc--CCCCeEEeEEEEEEeCCCCCcC
Confidence 469999999999999988 4665 689999 68899976654432 3322211 023689999999943 2
Q ss_pred hHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecccccCCCC-CCCHHHHHHHHHhCCCCCCCCc-
Q psy11423 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM-PSSHSELLNWYQKIGLSICGEY- 267 (655)
Q Consensus 190 ~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~~~~-~~~~~e~l~~L~~~GF~~~~~~- 267 (655)
.|+.+... . |..+ +......++.|++|++...++.++ ..+..+..+.|.++--+.....
T Consensus 403 ~F~~L~~r----~-------r~~~--------~~~~~~~~v~~~vFDlL~l~G~~l~~~Pl~eRr~~L~~~~~~~~~~i~ 463 (688)
T 1x9n_A 403 PFQVLTTR----K-------RKEV--------DASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFV 463 (688)
T ss_dssp CHHHHTTS----C-------SSCC--------CGGGCCSEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHBCCBTTTEE
T ss_pred CHHHHHHH----h-------hccc--------chhhcccceEEEEEechhhcCCccccCCHHHHHHHHHHhhccCCCcEE
Confidence 57654211 0 0000 111124579999999986544332 2578888899988743332222
Q ss_pred ----eeeCCHHHHHHHHHHHHHhhcCCCCccceEEEEEC--ChhhhhhhCCCCCCCCceEeecCCc-----ceeeEEEEE
Q psy11423 268 ----SVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKIN--CLSTQKKLGFTSRAPRFALAYKFLS-----KEALTKIKA 336 (655)
Q Consensus 268 ----~~~~~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~--~~~~~~~lG~ts~~PrwaiA~Kf~~-----~~~~T~v~~ 336 (655)
..+.+.+++.++++...+ -..+|+|+|-- +..++- | .+...| +=+|-.. .+....|.+
T Consensus 464 ~~~~~~~~~~~~~~~~~~~a~~------~g~EGlV~K~~~~ds~Y~~--G--kRs~~W-lK~K~~y~~~~~dt~D~vVIG 532 (688)
T 1x9n_A 464 FATSLDTKDIEQIAEFLEQSVK------DSCEGLMVKTLDVDATYEI--A--KRSHNW-LKLKKDYLDGVGDTLDLVVIG 532 (688)
T ss_dssp ECCEECCCCHHHHHHHHHHHHH------TSEEEEEEEESSSSCSSCT--T--TCSEEE-EEEEHHHHHSSCEEEEEEEEE
T ss_pred EEeeEecCCHHHHHHHHHHHHh------cCCceeEEeecccCCCCCC--C--CcCchH-heeehhhhccccccccEEEEE
Confidence 224678889988876653 34799999996 433331 2 123334 3444331 356677888
Q ss_pred EEEeecC-cceeeeEE--EEEEEEECCE--EEEEe-eCCCHHHHHh
Q psy11423 337 INIQIGR-TGIITPVA--LLKPVLIDGI--TITRA-TLHNESEIYR 376 (655)
Q Consensus 337 I~~qvGR-TG~itPvA--~lePV~l~G~--tVsra-tLhN~~~i~~ 376 (655)
..|--|| +|.++..- ..+|- +|. +|.++ |.++-+..++
T Consensus 533 ~~~g~Gkr~g~~gslllg~~d~~--~~~l~~vgkvgtGftd~~~~~ 576 (688)
T 1x9n_A 533 AYLGRGKRAGRYGGFLLASYDED--SEELQAICKLGTGFSDEELEE 576 (688)
T ss_dssp EEEBCTTSBTSEEEEEEEEEETT--TTEEEEEEEECCSCCHHHHHH
T ss_pred EEeCCCCCCCceeeEEEEEEeCC--CCeEEEEeeeCCCCCHHHHHH
Confidence 8877665 56555432 22220 132 44453 5677777665
No 36
>3l2p_A DNA ligase 3; DNA ligase, DNA repair, ATP-binding, cell cycle, cell divisi damage; HET: DNA AMP; 3.00A {Homo sapiens}
Probab=97.75 E-value=0.00069 Score=76.85 Aligned_cols=215 Identities=15% Similarity=0.166 Sum_probs=134.9
Q ss_pred ceEEEEEecceeEEEEEEeCCEEeEEEecCCCCccchhhhh-hhhcc-cCCcccccCCCCceEEEEEEEEeehh------
Q psy11423 118 IEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTN-IHIIH-KIPLVLNIKYPPELLEVRCEVLIYKK------ 189 (655)
Q Consensus 118 ~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n-~~~i~-~iP~~l~~~~~p~~~evRGEv~~~~~------ 189 (655)
-.|++|+|+||.-+.+.+.+|. ++..||+ |+|+|.- +..+. .+|..++. ...+.+-||++.-..
T Consensus 247 ~~~~~E~K~DG~R~qih~~g~~-v~l~SR~----g~~~~p~~~~~l~~~l~~~~~~---~~~~iLDGElv~~d~~~g~~~ 318 (579)
T 3l2p_A 247 NGMFSEIKYDGERVQVHKNGDH-FSYFSRS----LKPVLPHKVAHFKDYIPQAFPG---GHSMILDSEVLLIDNKTGKPL 318 (579)
T ss_dssp TCEEEEECCCSEEEEEEEETTE-EEEECTT----SCBCCGGGTTTGGGTHHHHSTT---CSEEEEEEEEEEBCTTTCCBC
T ss_pred CCeEEEEccCcEEEEEEEECCE-EEEECCC----CCccChhHHHHHHHHHHHhcCc---CCceEEEeEEEEEeCCCCccc
Confidence 3689999999999998887775 7999995 7787533 22221 13333321 236899999998542
Q ss_pred hHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecccccCCCC-CCCHHHHHHHHHhCCCCCCCCce
Q psy11423 190 DFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM-PSSHSELLNWYQKIGLSICGEYS 268 (655)
Q Consensus 190 ~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~~~~-~~~~~e~l~~L~~~GF~~~~~~~ 268 (655)
.|+.+.. +.|+. ....++.|++|++...++.++ ..+..+..+.|.++--+.+....
T Consensus 319 ~F~~L~~-----------~~~~~------------~~~~~v~~~vFDlL~l~G~~L~~~Pl~eRr~~L~~~~~~~~~~i~ 375 (579)
T 3l2p_A 319 PFGTLGV-----------HKKAA------------FQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIPNRIM 375 (579)
T ss_dssp CGGGGSH-----------HHHHH------------CSSCCEEEEEEEEEEETTEECTTSCHHHHHHHHHHHCCCBTTTEE
T ss_pred CHHHHHH-----------Hhhhh------------cccCCeEEEEEEeeccCCCccccCCHHHHHHHHHHHhhcCCCeEE
Confidence 4543311 01110 112479999999987554332 25788999999887544433222
Q ss_pred -----eeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCC-------cceeeEEEEE
Q psy11423 269 -----VLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFL-------SKEALTKIKA 336 (655)
Q Consensus 269 -----~~~~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~-------~~~~~T~v~~ 336 (655)
.+.+.+++.++++...+. ...|+|+|--+..++- |. . .| +=+|-. .......|.+
T Consensus 376 ~~~~~~~~~~~~~~~~~~~a~~~------g~EGlv~K~~ds~Y~~--Gr---r-~W-lK~K~~y~~~g~~~~t~D~vViG 442 (579)
T 3l2p_A 376 FSEMKRVTKALDLADMITRVIQE------GLEGLVLKDVKGTYEP--GK---R-HW-LKVKKDYLNEGAMADTADLVVLG 442 (579)
T ss_dssp ECCEEEECSHHHHHHHHHHHHHT------TCCCEEEEESSCCCCT--TC---E-EE-EEECTTTCC---CCEEEEEEEEE
T ss_pred EeeeEEcCCHHHHHHHHHHHHHh------CCCceEEecCcCCCCC--CC---e-ee-EEEechhhccccccccccEEEEE
Confidence 356788888888766532 4699999987765542 22 1 23 344432 1466778888
Q ss_pred EEEeec-CcceeeeE--EEEEEEEECC--EEEEEe-eCCCHHHHHhcC
Q psy11423 337 INIQIG-RTGIITPV--ALLKPVLIDG--ITITRA-TLHNESEIYRKN 378 (655)
Q Consensus 337 I~~qvG-RTG~itPv--A~lePV~l~G--~tVsra-tLhN~~~i~~~~ 378 (655)
..|--| |+|.++.. +..+|- +| ++|-++ |.++-+.++++.
T Consensus 443 ~~~G~Gkr~g~~g~lllg~~d~~--~~~l~~vgkvgtGftd~~l~~l~ 488 (579)
T 3l2p_A 443 AFYGQGSKGGMMSIFLMGCYDPG--SQKWCTVTKCAGGHDDATLARLQ 488 (579)
T ss_dssp EECCCTTSCSSCCEEEEEEECTT--TSSEEEEEEECTTCCHHHHHHTT
T ss_pred EEeCCCCCCCceeEEEEEEEeCC--CCeEEEecCccCCCCHHHHHHHH
Confidence 887766 56666643 444431 23 345565 889999888863
No 37
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=2e-05 Score=72.21 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=46.0
Q ss_pred CCCCeEecccccCccEEEecCCCCchHHHHHHcCCeeeCHHHHHHHHh
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~~g~K~~kA~~lgi~ii~e~~f~~~l~ 647 (655)
.+||++..+|++++++|||++..|+|+++|+++||+|++++.|.+.+.
T Consensus 47 ~~Gg~v~~~~s~~~ThLI~~~~~~~K~~~A~~~gi~IV~~~Wl~d~~~ 94 (129)
T 2d8m_A 47 ELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHR 94 (129)
T ss_dssp HTTEEEESSCCTTCCEEEESSSSCHHHHHHHHHTCEEEETHHHHHHHH
T ss_pred HcCCEEeCCcCCCCeEEEecCCCChHHHHHHHCCCcEecHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999885
No 38
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=97.53 E-value=7.2e-05 Score=79.84 Aligned_cols=51 Identities=22% Similarity=0.329 Sum_probs=48.4
Q ss_pred CCCCccHHHHHHHHHhCCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHhcC
Q psy11423 527 GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQ 577 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f~~ 577 (655)
.||.||++.|++|.++|||++++.+|+.+||.+++|||++.|+.|++-+..
T Consensus 319 ~IPrl~~~iae~Lv~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~IregL~r 369 (377)
T 3c1y_A 319 TVARIPLSIGYNVVRMFKTLDQISKASVEDLKKVEGIGEKRARAISESISS 369 (377)
T ss_dssp HTSCCCHHHHHHHHHHHCSHHHHTTCCHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHhCCHHHHHhCCHHHHHhccCccHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999987653
No 39
>1ckm_A MRNA capping enzyme; nucleotidyltransferase; HET: GTP; 2.50A {Paramecium bursaria chlorella virus 1} SCOP: b.40.4.6 d.142.2.3 PDB: 1ckn_A* 1cko_A* 1ckn_B*
Probab=97.43 E-value=0.00094 Score=70.64 Aligned_cols=152 Identities=13% Similarity=0.011 Sum_probs=92.2
Q ss_pred ceEEEEEecceeEEEEEEe---CCEEeEEEecCCCCccchhhhhhhhcccCCcccccCCCCceEEEEEEEEeehhhHHHH
Q psy11423 118 IEYIAELKFDGIAVNLRYE---YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194 (655)
Q Consensus 118 ~~~~~e~KiDGlsi~l~Y~---~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~l~~~~~p~~~evRGEv~~~~~~F~~~ 194 (655)
..|++|+|.||+-+.+... ++.-+...||+ |+++|.-. +.++.. .+....+-||+++...
T Consensus 75 ~~y~ve~K~DG~R~ll~~~~~~g~g~v~L~sR~----~~~~t~~f---p~~~~~-----~~~~~vLDGElv~~~~----- 137 (330)
T 1ckm_A 75 NKYVVSEKTDGIRFMMFFTRVFGFKVCTIIDRA----MTVYLLPF---KNIPRV-----LFQGSIFDGELCVDIV----- 137 (330)
T ss_dssp SCEEEEEEECSEEEEEEEEEETTEEEEEEECTT----CCEEECCC---SCCCTT-----GGGCEEEEEEEEEETT-----
T ss_pred CCEEEEECcceEEEEEEEEecCCCCEEEEEeCC----CCEEeccC---hhhhhc-----cCCCeeEEEEEEEEcC-----
Confidence 3699999999999988776 22457899995 78888632 223211 2446899999998431
Q ss_pred HHHHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecccccCCCC-CCCHHHHHHHHHhC--CC---CCCCC-c
Q psy11423 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM-PSSHSELLNWYQKI--GL---SICGE-Y 267 (655)
Q Consensus 195 n~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~~~~-~~~~~e~l~~L~~~--GF---~~~~~-~ 267 (655)
.| .+.|++|++...++.++ .....+.++.|+++ +. ...+. .
T Consensus 138 -------------------~~-------------~~~f~vFDlL~~~G~dl~~~pl~eRr~~L~~~l~~~~~~~~~~~~i 185 (330)
T 1ckm_A 138 -------------------EK-------------KFAFVLFDAVVVSGVTVSQMDLASRFFAMKRSLKEFKNVPEDPAIL 185 (330)
T ss_dssp -------------------TT-------------EEEEEEEEEEEETTEECTTSCHHHHHHHHHHHHTTCCCCTTSSSEE
T ss_pred -------------------CC-------------eEEEEEEeeeeeCCcccccCCHHHHHHHHHHHHhhhcccCCCCeEE
Confidence 01 27899999987655433 24677888888764 21 11111 1
Q ss_pred eeeC--CHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCC
Q psy11423 268 SVLS--GVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFL 326 (655)
Q Consensus 268 ~~~~--~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~ 326 (655)
.... .. ++.++++++..... ..|..||+|+|-.+..++- | +...| +=||.+
T Consensus 186 ~~~~~~~~-~~~~~~~~~~~~~~-~~yg~EGlI~K~~dspY~~--G---r~~~~-lKwK~~ 238 (330)
T 1ckm_A 186 RYKEWIPL-EHPTIIKDHLKKAN-AIYHTDGLIIMSVDEPVIY--G---RNFNL-FKLKPG 238 (330)
T ss_dssp EECCCEET-TCHHHHHHHHHHHH-HHSCEEEEEEEESSSCCCC--E---EEEEE-EEECST
T ss_pred EEEEEEeh-hHHHHHHHHHHHHh-ccCCCceEEEeeCCCcccC--C---CccCe-EEEEeC
Confidence 1111 12 34444433222211 1468999999998866552 2 33456 777764
No 40
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=97.43 E-value=0.00015 Score=64.00 Aligned_cols=48 Identities=8% Similarity=0.228 Sum_probs=43.7
Q ss_pred CCCCeEecccccCccEEEecCCC---CchHHHHHHcCCeeeCHHHHHHHHh
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQKP---GKKLEKAIKLNIKILDEKNFVKIVK 647 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~~---g~K~~kA~~lgi~ii~e~~f~~~l~ 647 (655)
.+||++..++++++++|||++.+ ++|+++|+++||+|++++.|.+.+.
T Consensus 40 ~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~Wl~~c~~ 90 (107)
T 3l3e_A 40 SLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLDCAQ 90 (107)
T ss_dssp HTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHHHHHHHH
T ss_pred HcCCEEeccccCCceEEEecCCCCCCCHHHHHHHHCCCeEecHHHHHHHHH
Confidence 78999999999999999997644 4899999999999999999998875
No 41
>3vnn_A DNA ligase 4; non-homologous END joining, DNA repair, XRCC4; HET: DNA; 2.90A {Homo sapiens}
Probab=97.31 E-value=0.00055 Score=63.44 Aligned_cols=117 Identities=12% Similarity=0.134 Sum_probs=70.7
Q ss_pred EEEEEecceeEEEEEEeCCEEeEEEecCCCCccchhhhhhhhccc-------CCcccccCCCCceEEEEEEEEeehhhHH
Q psy11423 120 YIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHK-------IPLVLNIKYPPELLEVRCEVLIYKKDFI 192 (655)
Q Consensus 120 ~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~i~~-------iP~~l~~~~~p~~~evRGEv~~~~~~F~ 192 (655)
|++|+|.||.-+.+.+.+|+ ++..|| -|+|+|+....+.. |...+.. ......+-||++.-..+
T Consensus 1 f~~E~K~DG~R~q~~~~g~~-v~l~SR----~g~d~t~~fPel~~~~~l~~~i~~~~~~--~~~~~iLDGEiv~~d~~-- 71 (139)
T 3vnn_A 1 FYIETKLDGERMQMHKDGDV-YKYFSR----NGYNYTDQFGASPTEGSLTPFIHNAFKA--DIQICILDGEMMAYNPN-- 71 (139)
T ss_dssp CCCCCCCCCEEEEEEEETTE-EEEECS----SCCBCTTTSCSSTTC--CCSGGGSCCCT--TCCEEEEEEEEEEEETT--
T ss_pred CEEEEEECeEEEEEEEECCE-EEEEeC----CCCCchhhccchhhhcchhHHHHHHHhc--cCCceEeeeEEEEecCC--
Confidence 57899999999999887775 799999 68999997654321 2222221 13579999999995321
Q ss_pred HHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecccccCCCC-CCCHHHHHHHHHhC
Q psy11423 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM-PSSHSELLNWYQKI 259 (655)
Q Consensus 193 ~~n~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~~~~-~~~~~e~l~~L~~~ 259 (655)
...|. ++... ++..........++.|++|++...++.++ ..+..+..+.|.++
T Consensus 72 ----------~~~f~-~~~~~---~~~~~~~~~~~~~~~~~vFDlL~l~G~~L~~~pl~eRr~~L~~l 125 (139)
T 3vnn_A 72 ----------TQTFM-QKGTK---FDIKRMVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSI 125 (139)
T ss_dssp ----------TTEEC-CC----------------CCEEEEEEEEEEEETTEECSSSCHHHHHHHHHHH
T ss_pred ----------CCCHH-HHHhh---hhhhhhhhccCceEEEEEEEEEeECCcCcccCCHHHHHHHHHHH
Confidence 01122 11000 01111111123478999999987655433 24778888888776
No 42
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=97.21 E-value=0.00048 Score=68.33 Aligned_cols=74 Identities=11% Similarity=0.152 Sum_probs=54.5
Q ss_pred hhhhccccCCcHHHHHHHHHHHHHhcccchhHHHHHhCCCCccHHHHHHHHHhCCC---HHHHHhcCHHHHhcCCCCCHH
Q psy11423 490 FKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN---LECMFKATEEQLLNIPKIGST 566 (655)
Q Consensus 490 ~~~L~~l~GfG~Ksa~nll~~I~~sk~~~l~r~L~algIpgIG~~~Ak~L~~~fgs---l~~l~~as~eeL~~i~GIG~~ 566 (655)
.||-..|=||..+....+ -+.|. .++|||+++|.+|++.|+. ..++...+.+.|.++||||++
T Consensus 69 RED~~~LyGF~~~~Er~l------------f~~L~--sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~K 134 (212)
T 2ztd_A 69 REDSMTLYGFPDGETRDL------------FLTLL--SVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKR 134 (212)
T ss_dssp ETTEEEEEEESSHHHHHH------------HHHHH--TSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHH
T ss_pred ecCCcceEecCcHHHHHH------------HHHhc--CcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHH
Confidence 455566666766433222 23333 4999999999999999984 234566789999999999999
Q ss_pred HHHHHHHHhcC
Q psy11423 567 TVKAFIKFINQ 577 (655)
Q Consensus 567 ~A~~I~~~f~~ 577 (655)
+|++|+.-+.+
T Consensus 135 tA~rIi~elk~ 145 (212)
T 2ztd_A 135 GAERMVLELRD 145 (212)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 99999876654
No 43
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=97.12 E-value=0.00026 Score=58.91 Aligned_cols=53 Identities=19% Similarity=0.284 Sum_probs=47.2
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHH
Q psy11423 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQ 512 (655)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~ 512 (655)
....|+|+|++++.+|++. ..++.+|+..+.++|..++|+|++.++.|++.+.
T Consensus 25 ~L~~I~gIG~~~A~~Ll~~--fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~~ 77 (78)
T 1kft_A 25 SLETIEGVGPKRRQMLLKY--MGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 77 (78)
T ss_dssp GGGGCTTCSSSHHHHHHHH--HSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred HHhcCCCCCHHHHHHHHHH--cCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHh
Confidence 4668999999999999997 2578999999999999999999999999988763
No 44
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=97.12 E-value=5.9e-05 Score=76.30 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=0.0
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHHHhcc
Q psy11423 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKL 516 (655)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~sk~ 516 (655)
..+.|+|+||+++.+|++.| +.++.+|...+.++|..++|||+|++++|+..++....
T Consensus 16 ~L~~IpGIGpk~a~~Ll~~g-f~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~~~~~ 73 (241)
T 1vq8_Y 16 ELTDISGVGPSKAESLREAG-FESVEDVRGADQSALADVSGIGNALAARIKADVGGLEV 73 (241)
T ss_dssp -----------------------------------------------------------
T ss_pred HHhcCCCCCHHHHHHHHHcC-CCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHHHHHh
Confidence 36789999999999999995 58999998889999999999999999999998875443
No 45
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=97.08 E-value=8e-05 Score=75.36 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=0.0
Q ss_pred hCCCCccHHHHHHHHHh-CCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHhc
Q psy11423 526 LGIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576 (655)
Q Consensus 526 lgIpgIG~~~Ak~L~~~-fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f~ 576 (655)
+.|||||+++|++|+++ |++++.|..++.++|.+++|||+++|+.|..+++
T Consensus 18 ~~IpGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~ 69 (241)
T 1vq8_Y 18 TDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKADVG 69 (241)
T ss_dssp ----------------------------------------------------
T ss_pred hcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHH
Confidence 36889999999888887 8889999888889999999999999999888765
No 46
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=97.08 E-value=0.00073 Score=55.32 Aligned_cols=56 Identities=18% Similarity=0.367 Sum_probs=50.3
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHH
Q psy11423 456 SRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQ 512 (655)
Q Consensus 456 sk~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~ 512 (655)
+.+..+++|+|+.++.+|.++|+ .|+.||-.++..+|..+.|+++..|++|+..-+
T Consensus 6 ~~~l~~L~Gi~~~~~~kL~e~Gi-~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr 61 (70)
T 1wcn_A 6 ADDLLNLEGVDRDLAFKLAARGV-CTLEDLAEQGIDDLADIEGLTDEKAGALIMAAR 61 (70)
T ss_dssp CHHHHSSTTCCHHHHHHHHTTTC-CSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred hhHHHHcCCCCHHHHHHHHHcCC-CcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHH
Confidence 34567899999999999999995 899999999999999999999999999987654
No 47
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=97.08 E-value=0.00073 Score=76.74 Aligned_cols=81 Identities=15% Similarity=0.284 Sum_probs=63.5
Q ss_pred hccccCCcHHHHHHHHHHHHHhcccch--------hHHHHHhCCCCccHHHHHHHHHh-CCCHHHHHhc-CHHHHhcCCC
Q psy11423 493 LLRLDRVSNKLANNILLAIQKSKLTTF--------SRFIYALGIRHVGETTAKELANY-FKNLECMFKA-TEEQLLNIPK 562 (655)
Q Consensus 493 L~~l~GfG~Ksa~nll~~I~~sk~~~l--------~r~L~algIpgIG~~~Ak~L~~~-fgsl~~l~~a-s~eeL~~i~G 562 (655)
+..+||+|++.+.++.+.++.-....+ .-|+.-+.|+|||+++|++|.+. |.|++.|..| ....|.+++|
T Consensus 59 ~~~lp~iG~~~~~~i~~~v~~g~~~~~~~~~~~~~~~~~~L~~v~GVGpk~A~~i~~~G~~s~edL~~a~~~~~L~~~~G 138 (578)
T 2w9m_A 59 FTGIPKVGKGIAAELSDFARSGTFAPLEAAAGQLPPGLLDLLGVRGLGPKKIRSLWLAGIDSLERLREAAESGELAGLKG 138 (578)
T ss_dssp CCSSTTCCHHHHHHHHHHHHHSSCHHHHHHHHHSCHHHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHHHHHHTTTTTSTT
T ss_pred hhhcCCCChhHHHHHHHHHcCChHHHHHHHhhhhHHHHHHHhCCCCcCHHHHHHHHHcCCCCHHHHHHHHhhCccccCCC
Confidence 999999999999888887754221111 12444469999999999999876 7799999986 4458999999
Q ss_pred CCHHHHHHHHH
Q psy11423 563 IGSTTVKAFIK 573 (655)
Q Consensus 563 IG~~~A~~I~~ 573 (655)
||+|++++|..
T Consensus 139 iG~Ktaq~I~~ 149 (578)
T 2w9m_A 139 FGAKSAATILE 149 (578)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999999954
No 48
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=97.06 E-value=0.00031 Score=79.82 Aligned_cols=57 Identities=25% Similarity=0.167 Sum_probs=50.9
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHhc-CChhhhccccCCcHHHHHHHHHHHHHhc
Q psy11423 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYK-INFKNLLRLDRVSNKLANNILLAIQKSK 515 (655)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~-L~~~~L~~l~GfG~Ksa~nll~~I~~sk 515 (655)
..+.|+|+|||++.+|++. .+.|++||.. +..+.|..++|||+|++++|+.+|+...
T Consensus 98 ~L~~v~GVGpk~A~~i~~~-G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~~l~~~~ 155 (578)
T 2w9m_A 98 DLLGVRGLGPKKIRSLWLA-GIDSLERLREAAESGELAGLKGFGAKSAATILENVVFLF 155 (578)
T ss_dssp HHTTSTTCCHHHHHHHHHT-TCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCcCHHHHHHHHHc-CCCCHHHHHHHHhhCccccCCCCCHHHHHHHHHHHHHHH
Confidence 4688999999999999999 5799999998 4677999999999999999999998543
No 49
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=97.05 E-value=0.00026 Score=58.49 Aligned_cols=44 Identities=20% Similarity=0.333 Sum_probs=33.6
Q ss_pred CCCCccHHHHHHHHHhCCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHhc
Q psy11423 527 GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f~ 576 (655)
.|||||+++|++|.+++ ..++.++|.+++|+|+++++.|..|++
T Consensus 31 ~ipGIG~~~A~~Il~~r------~~~s~~eL~~v~Gig~k~~~~i~~~l~ 74 (75)
T 2duy_A 31 ALPGIGPVLARRIVEGR------PYARVEDLLKVKGIGPATLERLRPYLR 74 (75)
T ss_dssp TSTTCCHHHHHHHHHTC------CCSSGGGGGGSTTCCHHHHHHHGGGEE
T ss_pred hCCCCCHHHHHHHHHHc------ccCCHHHHHhCCCCCHHHHHHHHHhcc
Confidence 46666666666666665 236778899999999999999988864
No 50
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=96.96 E-value=0.00094 Score=56.86 Aligned_cols=52 Identities=10% Similarity=0.092 Sum_probs=47.4
Q ss_pred cccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHHH
Q psy11423 460 MNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (655)
Q Consensus 460 l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~ 513 (655)
..|+|+|++++.+|++.- .++.+++..+.++|..++|+|++.|+.|++.++.
T Consensus 22 ~~IpgIG~~~A~~Ll~~f--gsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 22 TTVKSVNKTDSQTLLTTF--GSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp TTSSSCCHHHHHHHHHHT--CBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred HcCCCCCHHHHHHHHHHC--CCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 489999999999999873 5789999999999999999999999999998864
No 51
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=96.90 E-value=0.00054 Score=77.75 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=51.7
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHhc-CChhhhccccCCcHHHHHHHHHHHHHhc
Q psy11423 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYK-INFKNLLRLDRVSNKLANNILLAIQKSK 515 (655)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~-L~~~~L~~l~GfG~Ksa~nll~~I~~sk 515 (655)
..+.|+|+|||++.++++...+.+++||.. +..++|.++||||+|++++|+.+|+...
T Consensus 94 ~l~~v~GvGpk~A~~~~~~lg~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i~~~l~~~~ 152 (575)
T 3b0x_A 94 EVMEVPGVGPKTARLLYEGLGIDSLEKLKAALDRGDLTRLKGFGPKRAERIREGLALAQ 152 (575)
T ss_dssp HHHTSTTTCHHHHHHHHHTSCCCSHHHHHHHHHHTGGGGSTTCCHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcCHHHHHHHHHhcCCCCHHHHHHHHHcCCcccCCCCCccHHHHHHHHHHHHH
Confidence 468899999999999999966899999998 6678899999999999999998887543
No 52
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=96.90 E-value=0.0021 Score=72.88 Aligned_cols=95 Identities=19% Similarity=0.214 Sum_probs=69.2
Q ss_pred ChHHHhcCChhhhccccCCcHHHHHHHHHHHHHhccc--------chhHHHHHhCCCCccHHHHHHHHHh--CCCHHHHH
Q psy11423 481 TAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLT--------TFSRFIYALGIRHVGETTAKELANY--FKNLECMF 550 (655)
Q Consensus 481 ~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~sk~~--------~l~r~L~algIpgIG~~~Ak~L~~~--fgsl~~l~ 550 (655)
.+.++.....+.+..|||+|++.+.++.+-++.-.-. ...-|..-+.|+|||+++|.++... +.+++.|.
T Consensus 43 ~i~~~~~~~~~~~~~lp~iG~~~~~~i~~~v~~g~~~l~~~~~~~~~~~~~~l~~v~GvGpk~A~~~~~~lg~~~~~~l~ 122 (575)
T 3b0x_A 43 PIEEIAEKGKEALMELPGVGPDLAEKILEFLRTGKVRKHEELSRKVPRGVLEVMEVPGVGPKTARLLYEGLGIDSLEKLK 122 (575)
T ss_dssp CHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHHSCHHHHHHHTSTTTCHHHHHHHHHTSCCCSHHHHH
T ss_pred chhhHhhcchhHHHhCCCCCHHHHHHHHHHHHcCcHHHHhhhhhhhHHHHHHHhcCCCcCHHHHHHHHHhcCCCCHHHHH
Confidence 4444443321229999999999999998887652211 1123444469999999999999886 57899998
Q ss_pred hcC-HHHHhcCCCCCHHHHHHHHHHh
Q psy11423 551 KAT-EEQLLNIPKIGSTTVKAFIKFI 575 (655)
Q Consensus 551 ~as-~eeL~~i~GIG~~~A~~I~~~f 575 (655)
.+- ..+|.++||||+++|++|..-+
T Consensus 123 ~a~~~~~l~~~~GiG~k~a~~i~~~l 148 (575)
T 3b0x_A 123 AALDRGDLTRLKGFGPKRAERIREGL 148 (575)
T ss_dssp HHHHHTGGGGSTTCCHHHHHHHHHHH
T ss_pred HHHHcCCcccCCCCCccHHHHHHHHH
Confidence 763 3579999999999999996533
No 53
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=96.87 E-value=0.001 Score=54.27 Aligned_cols=54 Identities=11% Similarity=0.281 Sum_probs=48.0
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHHHh
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKS 514 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~s 514 (655)
...|+|+|++++.+|++. ..++.+|+..+.++|..++|+|++.|+.|+..++..
T Consensus 16 L~~i~giG~~~a~~Ll~~--fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~~ 69 (75)
T 1x2i_A 16 VEGLPHVSATLARRLLKH--FGSVERVFTASVAELMKVEGIGEKIAKEIRRVITAP 69 (75)
T ss_dssp HTTSTTCCHHHHHHHHHH--HCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHSC
T ss_pred HcCCCCCCHHHHHHHHHH--cCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHhCc
Confidence 457999999999999985 257899999999999999999999999999988753
No 54
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=96.85 E-value=0.001 Score=56.99 Aligned_cols=52 Identities=10% Similarity=0.092 Sum_probs=46.8
Q ss_pred cccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHHH
Q psy11423 460 MNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (655)
Q Consensus 460 l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~ 513 (655)
..|+|+|++++.+|++.- .++.+|+..+.++|..++|+|++.|+.|++.+..
T Consensus 35 ~~IpgIG~~~A~~Ll~~f--gs~~~l~~as~~eL~~i~GIG~~~a~~I~~~l~~ 86 (91)
T 2a1j_B 35 TTVKSVNKTDSQTLLTTF--GSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 86 (91)
T ss_dssp TTSTTCCHHHHHHHHHHH--SSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHHS
T ss_pred HcCCCCCHHHHHHHHHHC--CCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHhh
Confidence 389999999999999862 4789999999999999999999999999998853
No 55
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=96.84 E-value=0.0009 Score=69.76 Aligned_cols=48 Identities=19% Similarity=0.359 Sum_probs=45.8
Q ss_pred CCCCeEecccc-cCccEEEecCCCCchHHHHHHcCCeeeCHHHHHHHHh
Q psy11423 600 TKGGKVVNFIS-KNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647 (655)
Q Consensus 600 ~~G~~v~~sVs-k~t~ylv~g~~~g~K~~kA~~lgi~ii~e~~f~~~l~ 647 (655)
.+||++.++++ ++|++||+++..|+|+++|+++||+|++++.|.+.+.
T Consensus 224 ~~GG~~~~~ls~~~~THLI~~~~~g~K~~~A~~~gi~IV~~~Wl~dsi~ 272 (298)
T 3olc_X 224 KHGGQYMGQLKMNECTHLIVQEPKGQKYECAKRWNVHCVTTQWFFDSIE 272 (298)
T ss_dssp HTTCEECSSCCTTTCCEEECSSSCSHHHHHHHHTTCEEECHHHHHHHHH
T ss_pred HcCCEEeceecCCCceEEEEeCCCchHHHHHHHCCCeEEeHHHHHHHHH
Confidence 78999999999 8999999999999999999999999999999999885
No 56
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=96.31 E-value=0.0049 Score=50.39 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=48.8
Q ss_pred cccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHHH
Q psy11423 460 MNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (655)
Q Consensus 460 l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~ 513 (655)
|++.|+++..+.+|+++|+ .|+.++-..+.++|..++||.+.++++|.+.-.+
T Consensus 9 ~~~lgI~e~~a~~L~~~Gf-~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~~ 61 (70)
T 1u9l_A 9 TKYLDIDEDFATVLVEEGF-STLEELAYVPMKELLEIEGLDEPTVEALRERAKN 61 (70)
T ss_dssp HHHHTCCHHHHHHHHHTTC-CCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHcCc-CcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHHH
Confidence 6788999999999999997 8999999999999999999999999999887643
No 57
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=96.30 E-value=0.0034 Score=67.44 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=45.7
Q ss_pred CCCCeEecccccCccEEEecCCCCchHHHHHHc-CCeeeCHHHHHHHHh
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKL-NIKILDEKNFVKIVK 647 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~~g~K~~kA~~l-gi~ii~e~~f~~~l~ 647 (655)
.+||+++++++++|++|||+...|+|+.+|+++ ||+|++++.|.+.+.
T Consensus 311 ~lGa~v~~~vs~~vTHLVa~~~~t~K~~~A~~~~~I~IV~~~Wl~~c~~ 359 (372)
T 3ef0_A 311 SFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLS 359 (372)
T ss_dssp HTTCEEESSSSSCCSEEEECSCCCHHHHHHHHSSSCCEEEHHHHHHHHH
T ss_pred HcCCEEeCcCCCCceEEEEcCCCchHHHHHHhcCCCEEEcHHHHHHHHH
Confidence 889999999999999999999889999999999 899999999999874
No 58
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=96.25 E-value=0.0038 Score=68.29 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=45.6
Q ss_pred CCCCeEecccccCccEEEecCCCCchHHHHHHc-CCeeeCHHHHHHHHh
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKL-NIKILDEKNFVKIVK 647 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~~g~K~~kA~~l-gi~ii~e~~f~~~l~ 647 (655)
.+||++.++|+++|++|||+...|+|+.+|+++ ||+|++++.|.+.+.
T Consensus 381 ~lGa~~~~~vs~~vTHLVa~~~~t~K~~~A~~~g~IkIVs~~WL~dcl~ 429 (442)
T 3ef1_A 381 SFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTESLS 429 (442)
T ss_dssp TTTCEECSSSSSCCSEEEECSCCCHHHHHHHHHSSSEEEEHHHHHHHHH
T ss_pred HcCCEEeCCCCCCceEEEeCCCCCHHHHHHHhcCCCEEEeHHHHHHHHH
Confidence 899999999999999999999889999999999 599999999999875
No 59
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=96.08 E-value=0.0047 Score=55.30 Aligned_cols=50 Identities=24% Similarity=0.281 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHHHh
Q psy11423 464 GLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKS 514 (655)
Q Consensus 464 GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~s 514 (655)
|+|+.++.+|.++|+ .|+.+|...+.++|..++|+++.+|++|+++..+.
T Consensus 32 GIg~~~i~kL~eAG~-~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl 81 (114)
T 1b22_A 32 GINANDVKKLEEAGF-HTVEAVAYAPKKELINIKGISEAKADKILAEAAKL 81 (114)
T ss_dssp TCSHHHHHHHHTTCC-SSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCc-CcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 999999999999997 89999999999999999999999999999987653
No 60
>2hvq_A ORF1, hypothetical 37.6 kDa protein in GP24-HOC intergenic region; RNA, ligase, lysine adenylate; HET: APK; 2.40A {Enterobacteria phage T4} PDB: 2hvr_A* 2hvs_A*
Probab=96.04 E-value=0.026 Score=59.66 Aligned_cols=137 Identities=13% Similarity=0.059 Sum_probs=82.7
Q ss_pred ccCCCCCCChHHHHHHHHHHHHhhccCCCceEEEEEecceeEEEEEEeCCEEeEEEecCCCCccch--------hhhhhh
Q psy11423 89 MMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGEN--------ITTNIH 160 (655)
Q Consensus 89 MlSL~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeD--------vT~n~~ 160 (655)
.-||.|-++ ..|++.+... + .....++++.|+||-++++.+.+|. +.+.|||--. -.+ +++...
T Consensus 6 Y~si~n~~~----~~~i~~~~~~-~-l~~~~vvvtEKlDG~N~~i~~~~~~-i~~~sR~~~l-~~~~~~~~~~~~~~~~~ 77 (335)
T 2hvq_A 6 YSSLENHYN----SKFIEKLYSL-G-LTGGEWVAREXIHGTNFSLIIERDK-VTCAKRTGPI-LPAEDFFGYEIILKNYA 77 (335)
T ss_dssp CCCCEETTC----HHHHHHHHHT-T-CSCSCEEEEECCSSEEEEEEEETTE-EEEEETTEEC-CTTCCCTTTHHHHHHHH
T ss_pred CCCCcchhh----hhHHHHHHhh-c-cCCCcEEEEEEecCcceEEEEECCE-EEEecCCccc-CCccccchHHHHHHHHH
Confidence 446777775 2345554321 1 1134799999999999999998888 5799998333 222 555542
Q ss_pred -hcccCCcccccCCCCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecc-
Q psy11423 161 -IIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG- 238 (655)
Q Consensus 161 -~i~~iP~~l~~~~~p~~~evRGEv~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~- 238 (655)
.|..+-..|... .+..+.|-||++=+. -|.+-.. . +..|++|+|-
T Consensus 78 ~~i~~L~~~l~~~-~~~~~~i~GE~~G~~-----------------------------Iq~~i~Y--~-~~~FyvFDI~~ 124 (335)
T 2hvq_A 78 DSIKAVQDIMETS-AVVSYQVFGEFAGPG-----------------------------IQKNVDY--G-DKDFYVFDIIV 124 (335)
T ss_dssp HHHHHHHTTHHHH-TEEEEEEEEEEESBT-----------------------------TBSSCCC--C-SSEEEEEEEEE
T ss_pred HHHHHHHHHhhcc-CCCcEEEEEEEccCc-----------------------------ccCCccc--C-CCeEEEEEEEE
Confidence 233232233110 135799999998321 1111111 1 4589999975
Q ss_pred cccCC-CCCCCHHHHHHHHHhCCCCCCCC
Q psy11423 239 ELRGM-NMPSSHSELLNWYQKIGLSICGE 266 (655)
Q Consensus 239 ~~~~~-~~~~~~~e~l~~L~~~GF~~~~~ 266 (655)
+.++. ...-+..+..+++..+||++++.
T Consensus 125 ~~~~~~~~~l~~~~~~~l~~~~gl~~VP~ 153 (335)
T 2hvq_A 125 TTESGDVTYVDDYMMESFCNTFKFKMAPL 153 (335)
T ss_dssp EETTCCEEECCHHHHHHHHHHHTCEESCE
T ss_pred ecCCCceeeCCHHHHHHHHHHcCCCeece
Confidence 32210 01257788889999999998874
No 61
>1p16_A GTP--RNA, mRNA capping enzyme alpha subunit; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans} SCOP: b.40.4.6 d.142.2.3
Probab=96.02 E-value=0.024 Score=61.29 Aligned_cols=175 Identities=11% Similarity=-0.003 Sum_probs=97.1
Q ss_pred ceEEEEEecceeEEEEEEe----CCEEeEEEecCCCCccchhhhhhhhcccCCccccc-CCCCceEEEEEEEEeehhhHH
Q psy11423 118 IEYIAELKFDGIAVNLRYE----YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-KYPPELLEVRCEVLIYKKDFI 192 (655)
Q Consensus 118 ~~~~~e~KiDGlsi~l~Y~----~G~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~l~~-~~~p~~~evRGEv~~~~~~F~ 192 (655)
..|++|+|.||+-+.+... +|.=+...||+ |++++..-...+.+...... ...+....+-||+++....
T Consensus 60 ~~~~ve~K~DG~R~ll~~~~~~~~g~~v~L~sR~----~~~~~i~~~~FP~~~~~~~~~~~~~~~~vLDGElV~~~~~-- 133 (395)
T 1p16_A 60 KDYFVCEKTDGLRCLLFLINDPDKGEGVFLVTRE----NDYYFIPNIHFPLSVNETREKPTYHHGTLLDGELVLENRN-- 133 (395)
T ss_dssp SCEEEEEEECSEEEEEEEEEETTTEEEEEEEETT----CCEEECCSCCCCSCTTCCSSSCCCCSSEEEEEEEEEECCS--
T ss_pred CCEEEEECccceEEEEEEeecccCCCEEEEEeCC----CceEEeccccCCcccccccchhccCCcceeeeEEEEeccC--
Confidence 3699999999999988663 44557999995 66754211111111111100 0124468999999986421
Q ss_pred HHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecccccCCCC-CCCHHHHHHHHHhCCCCC--------
Q psy11423 193 KLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM-PSSHSELLNWYQKIGLSI-------- 263 (655)
Q Consensus 193 ~~n~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~~~~-~~~~~e~l~~L~~~GF~~-------- 263 (655)
....++.|++|++....+.++ .....+.++.|+++=+..
T Consensus 134 --------------------------------~~~~~~~f~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~~~~~~~~~~ 181 (395)
T 1p16_A 134 --------------------------------VSEPVLRYVIFDALAIHGKCIIDRPLPKRLGYITENVMKPFDNFKKHN 181 (395)
T ss_dssp --------------------------------SSCCEEEEEEEEEEEETTEECTTSCHHHHHHHHHHHTHHHHHHHHHHC
T ss_pred --------------------------------CCcceeEEEEEEEEEECCeEcccCCHHHHHHHHHHHhhcccHhhhhcC
Confidence 012578999999987665433 246778888887742110
Q ss_pred --------CCC-ceee--CCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCcc-eee
Q psy11423 264 --------CGE-YSVL--SGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSK-EAL 331 (655)
Q Consensus 264 --------~~~-~~~~--~~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~-~~~ 331 (655)
.+. .... .....+.++++. -..+.+..||||+|--+..++- | +. .--+=||.+.. +..
T Consensus 182 ~~~~~~~~~pf~v~~~~~~~~~~~~~~~~~----~~~~~~g~EGlI~K~~ds~Y~~--G---r~-~~wlKwK~~~~~TvD 251 (395)
T 1p16_A 182 PDIVNSPEFPFKVGFKTMLTSYHADDVLSK----MDKLFHASDGLIYTCAETPYVF--G---TD-QTLLKWKPAEENTVD 251 (395)
T ss_dssp HHHHSCTTSCCEEEECCCEEGGGTHHHHTT----GGGCSSCEEEEEEEESSSCCCS--E---EE-EEEEEECCGGGCCEE
T ss_pred ccccccccCceEEEEecchhHHHHHHHHHH----HHhcCCCCCeEEEEeCCCCcCC--C---Cc-cceEEEecCCCeEEE
Confidence 000 0011 122333444332 1345789999999997765542 3 12 23456666443 333
Q ss_pred EEEEEEEEe
Q psy11423 332 TKIKAINIQ 340 (655)
Q Consensus 332 T~v~~I~~q 340 (655)
..|.....+
T Consensus 252 fvl~~~~~~ 260 (395)
T 1p16_A 252 FQLEFVFNE 260 (395)
T ss_dssp EEEEEECEE
T ss_pred EEEEEEecc
Confidence 344433333
No 62
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=95.99 E-value=0.006 Score=48.75 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=45.0
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHH-HHHHHHHHH
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKL-ANNILLAIQ 512 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ks-a~nll~~I~ 512 (655)
..+|||+|+++..+|.+.= .|+.+|..++.++|.++ +|.+. |++|++.+.
T Consensus 6 L~~IpGIG~kr~~~LL~~F--gs~~~i~~As~eeL~~v--ig~~~~A~~I~~~l~ 56 (63)
T 2a1j_A 6 LLKMPGVNAKNCRSLMHHV--KNIAELAALSQDELTSI--LGNAANAKQLYDFIH 56 (63)
T ss_dssp HHTSTTCCHHHHHHHHHHC--SSHHHHHTCCHHHHHHH--HSCHHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHc--CCHHHHHHCCHHHHHHH--cCchHHHHHHHHHHh
Confidence 3489999999999999864 59999999999999999 88999 999998875
No 63
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=95.98 E-value=0.0062 Score=63.41 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=45.5
Q ss_pred CCCCeEecccccCccEEEecCCCCchHHHHHHcCCeeeCHHHHHHHHh
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~~g~K~~kA~~lgi~ii~e~~f~~~l~ 647 (655)
.+||++.++++++|++||+|+..+.|..+|.++||+|++++.+.+.+.
T Consensus 130 ~~GG~v~~~~t~~tTHLI~~~~~t~Ky~~A~~~gi~IV~~~Wl~~c~~ 177 (298)
T 3olc_X 130 MMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWE 177 (298)
T ss_dssp HTTCEECSSCCTTCCEEEESSSCSHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HCCCEEecCcCCCeeEEEEeCCCChHHHHHHHCCCeEeeHHHHHHHHH
Confidence 789999999999999999999999999999999999999999998764
No 64
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=95.94 E-value=0.012 Score=48.46 Aligned_cols=51 Identities=12% Similarity=0.208 Sum_probs=46.2
Q ss_pred cCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHHH
Q psy11423 462 IIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (655)
Q Consensus 462 I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~ 513 (655)
-=+|+.....-|-.+| |.++.||...+.++|.+++|||+|+.+.|.+.++.
T Consensus 13 ~L~LS~Ra~NcLkrag-I~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~~ 63 (73)
T 1z3e_B 13 ELDLSVRSYNCLKRAG-INTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEE 63 (73)
T ss_dssp GSCCBHHHHHHHHHTT-CCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHcC-CCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3378999999998887 79999999999999999999999999999988864
No 65
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=95.80 E-value=0.017 Score=47.14 Aligned_cols=48 Identities=21% Similarity=0.184 Sum_probs=44.2
Q ss_pred CCCCccHHHHHHHHHh-CCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHH
Q psy11423 527 GIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKF 574 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~-fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~ 574 (655)
.+||||+..+.+|.+. |.|++.|..++.++|..|.||++..|+.|+.-
T Consensus 11 ~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~a 59 (70)
T 1wcn_A 11 NLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMA 59 (70)
T ss_dssp SSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHH
Confidence 6789999999999975 89999999999999999999999999998753
No 66
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=95.57 E-value=0.0061 Score=64.97 Aligned_cols=108 Identities=15% Similarity=0.192 Sum_probs=69.0
Q ss_pred cccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHH--HHHHHh--------------------ccc
Q psy11423 460 MNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNIL--LAIQKS--------------------KLT 517 (655)
Q Consensus 460 l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll--~~I~~s--------------------k~~ 517 (655)
-.|+|+||.+++.|.++=+ |++.+-+.+.++|.. +|+|+|.+..|+ ..+... +..
T Consensus 471 tAIaGIGp~tAeRLLEkFG--SVe~Vm~AteDELRe-dGIGekqarrI~gl~~l~~~~~d~~~a~elkr~ygs~savr~~ 547 (685)
T 4gfj_A 471 ISIRGIDRERAERLLKKYG--GYSKVREAGVEELRE-DGLTDAQIRELKGLKTLESIVGDLEKADELKRKYGSASAVRRL 547 (685)
T ss_dssp HTSTTCCHHHHHHHHHHHT--SHHHHHHSCHHHHHH-TTCCHHHHHHHHTCHHHHHHSSSHHHHHHHHHHSSCHHHHHHS
T ss_pred eccCCCCHHHHHHHHHHhc--CHHHHHhCCHHHHHH-ccccHHHHHHHhhHHHHHHHhcchhhHHHHHHhhccHHHHHhc
Confidence 4699999999999999743 777888889999977 999999998875 222211 011
Q ss_pred chhHHHHHh-----------CCC-----CccHHHHHHHHHhCCCHHHHHhc-CHHHHhcCCCCCHHHHHHHH
Q psy11423 518 TFSRFIYAL-----------GIR-----HVGETTAKELANYFKNLECMFKA-TEEQLLNIPKIGSTTVKAFI 572 (655)
Q Consensus 518 ~l~r~L~al-----------gIp-----gIG~~~Ak~L~~~fgsl~~l~~a-s~eeL~~i~GIG~~~A~~I~ 572 (655)
|.. -|.-| ||| +..-.+|..|.+.|++|..+..+ +.++|.. +|+|++.+..|.
T Consensus 548 pv~-elrelg~sd~~ia~ikgip~~~~~~~~~e~a~~l~er~~~~~~~~~~~~~~~l~~-~g~~~~~~~eik 617 (685)
T 4gfj_A 548 PVE-ELRELGFSDDEIAEIKGIPKKLREAFDLETAAELYERYGSLKEIGRRLSYDDLLE-LGATPKAAAEIK 617 (685)
T ss_dssp CHH-HHHTTSCCHHHHHHHHTCCHHHHHHSCHHHHHHHHHHHSSSTGGGGSCGGGCCSS-SCCGGGC-----
T ss_pred cHH-HHHHcCCchhhHHHhcCCcHHHHhhcCHHHHHHHHHHhccHHHHhhcCCHHHHhc-cCCCHHHHHHhc
Confidence 111 11112 443 22234567899999999988876 5556555 566666555554
No 67
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=95.55 E-value=0.019 Score=47.92 Aligned_cols=49 Identities=12% Similarity=0.216 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHHH
Q psy11423 464 GLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (655)
Q Consensus 464 GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~ 513 (655)
+|+....+-|-.+| |.++.||...+.++|.++.|||+||.+.|.+.++.
T Consensus 22 ~LS~Ra~NcLk~ag-I~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~e 70 (79)
T 3gfk_B 22 DLSVRSYNCLKRAG-INTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEE 70 (79)
T ss_dssp CCBHHHHHHHHHTT-CCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhC-CCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHHHHH
Confidence 78899999998888 79999999999999999999999999999988764
No 68
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase, guanylyltransferase, complex, hydrolase, mRNA processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Probab=95.50 E-value=0.087 Score=57.81 Aligned_cols=146 Identities=17% Similarity=0.113 Sum_probs=86.1
Q ss_pred ceEEEEEecceeEEEEEEeC----C-EEeEEEecCCCCccchhhhhhhhcccCCcc-----cccCCCCceEEEEEEEEee
Q psy11423 118 IEYIAELKFDGIAVNLRYEY----G-YLKQASTRGDGNIGENITTNIHIIHKIPLV-----LNIKYPPELLEVRCEVLIY 187 (655)
Q Consensus 118 ~~~~~e~KiDGlsi~l~Y~~----G-~l~~a~TRGdG~~GeDvT~n~~~i~~iP~~-----l~~~~~p~~~evRGEv~~~ 187 (655)
-.|++++|.||+-+.+.... | .=+.++||++- ++|.+-...+.++.. +. ..+....+-||+++.
T Consensus 65 ~dY~V~eK~DGiR~Ll~i~~~~~~g~g~v~LidR~~~----~~~v~~~~FP~~~~~~~~~~l~--~~~~~TlLDGElV~d 138 (461)
T 3kyh_C 65 HDYYVCEKTDGLRVLMFIVINPVTGEQGCFMIDRENN----YYLVNGFRFPRLPQKKKEELLE--TLQDGTLLDGELVIQ 138 (461)
T ss_dssp SCEEEEEEECSEEEEEEEEECTTTCCEEEEEECSSSC----EEEECCCCCCCCSSCCSSGGGT--CCCCSEEEEEEEEEE
T ss_pred CCEEEEEcccceEEEEEEeccccCCCceEEEEeCCCC----eEEcccccCCcccccchhhhhh--ccCCCeEEEEEEEec
Confidence 47999999999999886652 2 34688999644 454221111222221 21 135567899999995
Q ss_pred hhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecccccCCCC-CCCHHHHHHHHHhCCCC----
Q psy11423 188 KKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM-PSSHSELLNWYQKIGLS---- 262 (655)
Q Consensus 188 ~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~~~~-~~~~~e~l~~L~~~GF~---- 262 (655)
...+ + ....+.|++|++....+.++ .....+.++.|.++=..
T Consensus 139 ~~~~----------------------~-----------~~~~~~y~~FDlL~~~G~dl~~~pl~eR~~~Le~~I~~P~~~ 185 (461)
T 3kyh_C 139 TNPM----------------------T-----------KLQELRYLMFDCLAINGRCLTQSPTSSRLAHLGKEFFKPYFD 185 (461)
T ss_dssp ECTT----------------------T-----------CCEEEEEEEEEEEEETTEECSSSBHHHHHHHHHHTTHHHHHH
T ss_pred cCCC----------------------C-----------CccceEEEEEEEEeECCcCcccCCHHHHHHHHHHHhcccchh
Confidence 3210 0 12479999999987665443 24677888888755110
Q ss_pred ----------CCCCceeeCCH---HHHHHHHHHHHHhhcCCCCccceEEEEECChhh
Q psy11423 263 ----------ICGEYSVLSGV---NKLIEFYKKINIKRFNLPYEIDGVVYKINCLST 306 (655)
Q Consensus 263 ----------~~~~~~~~~~~---~ev~~~~~~~~~~r~~l~y~iDGiVikv~~~~~ 306 (655)
..+......+. .++.++++ .-..+.+..||+|+|--+..+
T Consensus 186 ~~~~~p~~~~~~pF~V~~K~~~~~~~~~~l~~----~~~~l~~~~EGLv~k~~~spY 238 (461)
T 3kyh_C 186 LRAAYPNRCTTFPFKISMKHMDFSYQLVKVAK----SLDKLPHLSDGLIFTPVKAPY 238 (461)
T ss_dssp HHHHCSTTCSCCCSEEEECCCEEGGGHHHHHH----HHTTCSSCEEEEEEEESSSBC
T ss_pred hhhccccccccCCcEEEeccchhhhhHHHHHH----hhhhccCCCCeEEEEeCCCCC
Confidence 01111122222 33444433 124688999999999866544
No 69
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=95.43 E-value=0.021 Score=48.43 Aligned_cols=49 Identities=14% Similarity=0.056 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHHH
Q psy11423 464 GLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (655)
Q Consensus 464 GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~ 513 (655)
+|+....+-|-.+| |.++.||...+.++|.+++|||+||.+.|.+.++.
T Consensus 18 ~LSvRa~NcLkrag-I~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~ 66 (86)
T 3k4g_A 18 ELTVRSANCLXAEA-IHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLAS 66 (86)
T ss_dssp CCCHHHHHHHHHTT-CCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcC-CCcHHHHHhCCHHHHhhccccCcccHHHHHHHHHH
Confidence 78999999998888 79999999999999999999999999999988875
No 70
>1s68_A RNA ligase 2; ribonucleic acid ligase, RNA repair; HET: AMP; 1.90A {Enterobacteria phage T4} SCOP: d.142.2.4
Probab=95.39 E-value=0.056 Score=54.73 Aligned_cols=148 Identities=15% Similarity=0.099 Sum_probs=83.1
Q ss_pred cCCCCCCChHHHHHHHHHHHHhhccCCCceEEEEEecceeEEEEEEeCCEEeEEEecCCCCcc-c------hhhhhh-hh
Q psy11423 90 MSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIG-E------NITTNI-HI 161 (655)
Q Consensus 90 lSL~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~G-e------DvT~n~-~~ 161 (655)
-||+|-++ ..|++++... + .....++++.|+||-++++.+.+|. +.+.|||--... + .+.+.. ..
T Consensus 6 ~~i~n~~~----~~~~~~~~~~-~-~~~~~vvvtEKldG~N~~i~~~~~~-i~~~sR~~~l~~~~~f~~~~~~~~~~~~~ 78 (249)
T 1s68_A 6 SSLENHYN----SKFIEKLYSL-G-LTGGEWVAREKIHGTNFSLIIERDK-VTCAKRTGPILPAEDFFGYEIILKNYADS 78 (249)
T ss_dssp CCCEETTC----HHHHHHHHHH-T-CSCSCEEEEECCCSEEEEEEEESSC-EEEEETTEECCTTCCCTTTHHHHHHTHHH
T ss_pred Ccccchhh----hHHHHHHHhh-c-cCCCCEEEEEEECCcceEEEEECCE-EEEEeCCcccCCCCccchHHHHHHHHHHH
Confidence 46777665 3445555321 1 1134799999999999999998887 569999833211 1 222211 11
Q ss_pred cccCCcccccCCCCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecc-cc
Q psy11423 162 IHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG-EL 240 (655)
Q Consensus 162 i~~iP~~l~~~~~p~~~evRGEv~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~-~~ 240 (655)
+..+-..|... .+..+.|-||++=+. -|.+-.. . +..|++|+|- +.
T Consensus 79 ~~~l~~~l~~~-~~~~~~i~GE~~G~~-----------------------------Iq~~v~Y--~-~~~FyvFdI~~~~ 125 (249)
T 1s68_A 79 IKAVQDIMETS-AVVSYQVFGEFAGPG-----------------------------IQKNVDY--C-DKDFYVFDIIVTT 125 (249)
T ss_dssp HHHHHHHHHHH-TEEEEEEEEEEESTT-----------------------------TSSSCCC--C-SCEEEEEEEEEEE
T ss_pred HHHHHHHhccc-CCCcEEEEEEEcccc-----------------------------ccCCccc--C-CCeEEEEEEEEec
Confidence 11111112100 135799999998321 1111111 1 4589999985 42
Q ss_pred cCC-CCCCCHHHHHHHHHhCCCCCCCCceeeCCHHHHHH
Q psy11423 241 RGM-NMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIE 278 (655)
Q Consensus 241 ~~~-~~~~~~~e~l~~L~~~GF~~~~~~~~~~~~~ev~~ 278 (655)
++. ...-+..+..+++..+||++++.... .+.+++.+
T Consensus 126 ~~g~~~~l~~~~~~~l~~~~gl~~VP~l~~-g~~~e~~~ 163 (249)
T 1s68_A 126 ESGDVTYVDDYMMESFCNTFKFKMAPLLGR-GKFEELIK 163 (249)
T ss_dssp TTCCEEECCHHHHHHHHHHHTCEESCEEEE-ECHHHHTT
T ss_pred CCCccccCCHHHHHHHHHHCCCCeecEEeE-EcHHHHhh
Confidence 211 01247778889999999998874322 24444444
No 71
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=95.37 E-value=0.01 Score=51.39 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=13.4
Q ss_pred cCHHHHhcCCCCCHHHHHHHHH
Q psy11423 552 ATEEQLLNIPKIGSTTVKAFIK 573 (655)
Q Consensus 552 as~eeL~~i~GIG~~~A~~I~~ 573 (655)
.+.++|.+++|||+++++.|+.
T Consensus 67 ~s~edL~~v~Gig~k~~~~l~~ 88 (98)
T 2edu_A 67 SQVEDLERVEGITGKQMESFLK 88 (98)
T ss_dssp SSGGGGGGSTTCCHHHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHHHH
Confidence 3445566666666666666654
No 72
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=95.27 E-value=0.0056 Score=50.30 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=10.9
Q ss_pred hcCChhhhccccCCcHHHHHHHHH
Q psy11423 486 YKINFKNLLRLDRVSNKLANNILL 509 (655)
Q Consensus 486 ~~L~~~~L~~l~GfG~Ksa~nll~ 509 (655)
-+++.++|..++|+|++.|++|++
T Consensus 22 N~a~~~~L~~ipGIG~~~A~~Il~ 45 (75)
T 2duy_A 22 NEASLEELMALPGIGPVLARRIVE 45 (75)
T ss_dssp TTCCHHHHTTSTTCCHHHHHHHHH
T ss_pred hhCCHHHHHhCCCCCHHHHHHHHH
Confidence 333444444444444444444444
No 73
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=95.21 E-value=0.019 Score=50.66 Aligned_cols=48 Identities=19% Similarity=0.139 Sum_probs=44.0
Q ss_pred CCCCeEecccccCccEEEecCCCCchHHHHHHcCCeeeCHHHHHHHHh
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~~g~K~~kA~~lgi~ii~e~~f~~~l~ 647 (655)
.+||++...+++.++.||+.+..++|+++|++.||+|++.+-+.+-+.
T Consensus 36 ~~GA~v~~~l~~~vTHvV~~~~~~~~~~~A~~~~i~iV~~~Wv~~C~~ 83 (107)
T 3pa6_A 36 DMGAKVSKTFNKQVTHVIFKDGYQSTWDKAQKRGVKLVSVLWVEKCRT 83 (107)
T ss_dssp HTTCEECSSCCTTCCEEEEESCCHHHHHHHHHHTCEEECHHHHHHHHH
T ss_pred HcCCEEecccCCCccEEEEeCCCChHHHHHhcCCCEEECHHHHHHHHH
Confidence 789999999999999999988777999999999999999999888763
No 74
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=95.15 E-value=0.013 Score=57.23 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=41.5
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCh-HHHhcCChhhhccccCCcHHHHHHHHHHHH
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTA-VDLYKINFKNLLRLDRVSNKLANNILLAIQ 512 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i-~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~ 512 (655)
...|+|+|||++.+|++.-....+ ..+..-+.++|.++||+|+|+|++|+..+.
T Consensus 74 L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 74 LLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHT
T ss_pred HhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHH
Confidence 457999999999999986532222 224445778899999999999999988774
No 75
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=95.06 E-value=0.025 Score=59.82 Aligned_cols=62 Identities=16% Similarity=0.284 Sum_probs=47.6
Q ss_pred hhhccccCCcHHHHHHHHHHHHHhcccchh------HHHHHh-CCCCccHHHHHHHHHh-CCCHHHHHhc
Q psy11423 491 KNLLRLDRVSNKLANNILLAIQKSKLTTFS------RFIYAL-GIRHVGETTAKELANY-FKNLECMFKA 552 (655)
Q Consensus 491 ~~L~~l~GfG~Ksa~nll~~I~~sk~~~l~------r~L~al-gIpgIG~~~Ak~L~~~-fgsl~~l~~a 552 (655)
.+|..|||+|++.|++|.+-++.-+-..+. .++.-+ .|||||+++|+++-+. +.|++.|..+
T Consensus 57 ~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l~~~Gi~tledL~~a 126 (335)
T 2bcq_A 57 QEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQ 126 (335)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCTTHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHHH
T ss_pred HHHhcCCCccHHHHHHHHHHHHcCCchHHHHHhhhhHHHHHHhcCCCcCHHHHHHHHHcCCCCHHHHHHH
Confidence 458999999999999999988742211121 356666 9999999999988765 6689998875
No 76
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=95.02 E-value=0.017 Score=48.85 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=44.9
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHH-HHHHHHHHH
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKL-ANNILLAIQ 512 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ks-a~nll~~I~ 512 (655)
..+|||+|+++..+|+..- .++.+|..++.++|..+ +|.+. |++|++.+.
T Consensus 20 L~~IpGIG~kr~~~LL~~F--gSl~~i~~AS~eEL~~v--ig~~~~A~~I~~~l~ 70 (84)
T 1z00_B 20 LLKMPGVNAKNCRSLMHHV--KNIAELAALSQDELTSI--LGNAANAKQLYDFIH 70 (84)
T ss_dssp HHTCSSCCHHHHHHHHHHS--SCHHHHHHSCHHHHHHH--HSCHHHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHHHc--CCHHHHHHCCHHHHHHH--hCchHHHHHHHHHHH
Confidence 3579999999999999864 69999999999999999 89998 999998874
No 77
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=94.90 E-value=0.02 Score=56.64 Aligned_cols=53 Identities=11% Similarity=0.265 Sum_probs=46.9
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHHH
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~ 513 (655)
.+.|+|+|++++..|.+.= .++.+|+..+.++|..++|+|++.|++|.+.+..
T Consensus 164 L~~i~gVg~~~a~~Ll~~f--gs~~~l~~a~~e~L~~v~GiG~~~a~~i~~~~~~ 216 (219)
T 2bgw_A 164 LQSFPGIGRRTAERILERF--GSLERFFTASKAEISKVEGIGEKRAEEIKKILMT 216 (219)
T ss_dssp HHTSTTCCHHHHHHHHHHH--SSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHc--CCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHhc
Confidence 3579999999999999973 4789999999999999999999999999988753
No 78
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=94.87 E-value=0.018 Score=48.51 Aligned_cols=47 Identities=30% Similarity=0.392 Sum_probs=40.9
Q ss_pred CCCCeEecccc--cCccEEEecCCCCchHHHHHHcCCeeeCHHHHHHHHhc
Q psy11423 600 TKGGKVVNFIS--KNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 648 (655)
Q Consensus 600 ~~G~~v~~sVs--k~t~ylv~g~~~g~K~~kA~~lgi~ii~e~~f~~~l~~ 648 (655)
.+||++..+++ +++++|||++..++|+.++ .|++|++++.+.+.+..
T Consensus 32 ~~GG~~~~~~~~~~~~THlI~~~~~~~K~~~~--~~~~iV~~~Wi~dci~~ 80 (92)
T 4id3_A 32 LHGGKFLHYLSSKKTVTHIVASNLPLKKRIEF--ANYKVVSPDWIVDSVKE 80 (92)
T ss_dssp HTTCEEESSCCCTTTCCEEECSCCCHHHHHHT--TTSCEECTHHHHHHHHH
T ss_pred HCCCEEEEEecCCCceEEEEecCCCHHHHHHc--CCCCEEcccHHHHHHHc
Confidence 78999999999 8999999999888776554 79999999999998853
No 79
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=94.85 E-value=0.022 Score=64.40 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=56.6
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhh---ccccCCcHHHHHHHHHHH---HHhcccchhHHHHHhCCCC
Q psy11423 457 RKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL---LRLDRVSNKLANNILLAI---QKSKLTTFSRFIYALGIRH 530 (655)
Q Consensus 457 k~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L---~~l~GfG~Ksa~nll~~I---~~sk~~~l~r~L~algIpg 530 (655)
.+.+.++|+|+|.+++|+++ +..=-...-.++ +.++++|++.|..|.+.. +.-.+.+...| ..|+|
T Consensus 480 ~~L~~l~g~geKsa~nL~~a-----Ie~sk~~~l~r~l~aLGI~~vG~~~a~~La~~f~sl~~l~~a~~e~l---~~i~g 551 (586)
T 4glx_A 480 GKLTGLERMGPKSAQNVVNA-----LEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEEL---QKVPD 551 (586)
T ss_dssp HHHHTSTTCCHHHHHHHHHH-----HHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHCSHHHHHHCCHHHH---TTSTT
T ss_pred HHHhcccCccHHHHHHHHHH-----HHHHcCCCHHHHHHHcCCCchhHHHHHHHHHHcCCHHHHHccCHHHH---hcCCC
Confidence 35678999999999999874 111111222222 456889999998887653 33233333322 38999
Q ss_pred ccHHHHHHHHHhCCCHHHH
Q psy11423 531 VGETTAKELANYFKNLECM 549 (655)
Q Consensus 531 IG~~~Ak~L~~~fgsl~~l 549 (655)
||+.+|+.|.+.|.+-+..
T Consensus 552 iG~~~A~si~~ff~~~~n~ 570 (586)
T 4glx_A 552 VGIVVASHVHNFFAEESNR 570 (586)
T ss_dssp CCHHHHHHHHHHHHSHHHH
T ss_pred ccHHHHHHHHHHHcCHHHH
Confidence 9999999999999764433
No 80
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=94.80 E-value=0.021 Score=65.58 Aligned_cols=81 Identities=19% Similarity=0.285 Sum_probs=52.6
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhh---ccccCCcHHHHHHHHHHH---HHhcccchhHHHHHhCCCCc
Q psy11423 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNL---LRLDRVSNKLANNILLAI---QKSKLTTFSRFIYALGIRHV 531 (655)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L---~~l~GfG~Ksa~nll~~I---~~sk~~~l~r~L~algIpgI 531 (655)
+...++|+|+|++++|+++ +..--.-...++ +.++|+|++.|+.|++.+ +.-++.+...+ ..||||
T Consensus 481 ~L~~l~gfG~Ksa~nLl~a-----Ie~sk~~~l~R~L~algi~~VG~~~Ak~La~~Fgsl~~l~~As~eeL---~~i~GI 552 (671)
T 2owo_A 481 KLTGLERMGPKSAQNVVNA-----LEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEEL---QKVPDV 552 (671)
T ss_dssp HHHTSTTCCHHHHHHHHHH-----HHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHCSHHHHHTCCHHHH---TTSTTC
T ss_pred HhhcccccchhHHHHHHHH-----HHHHhcCChhheehhhcccCccHHHHHHHHHHcCCHHHHHhCCHHHH---hhcCCC
Confidence 4667889999999998863 221111222332 267889999888888753 33333343322 278999
Q ss_pred cHHHHHHHHHhCCCH
Q psy11423 532 GETTAKELANYFKNL 546 (655)
Q Consensus 532 G~~~Ak~L~~~fgsl 546 (655)
|+++|+.|.+.|..-
T Consensus 553 G~~~A~sI~~ff~~~ 567 (671)
T 2owo_A 553 GIVVASHVHNFFAEE 567 (671)
T ss_dssp CHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHHHHhH
Confidence 999999998888753
No 81
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=94.79 E-value=0.026 Score=55.54 Aligned_cols=54 Identities=13% Similarity=0.258 Sum_probs=42.9
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCh-HHHhcCChhhhccccCCcHHHHHHHHHHHH
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTA-VDLYKINFKNLLRLDRVSNKLANNILLAIQ 512 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i-~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~ 512 (655)
...|+|+|||++.+|++.-....+ ..+..-+.++|.++||+|+|+|++|+..+.
T Consensus 75 L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~elk 129 (203)
T 1cuk_A 75 LIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMK 129 (203)
T ss_dssp HHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHH
Confidence 457999999999999986532222 234446788999999999999999998885
No 82
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=94.70 E-value=0.019 Score=52.49 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=20.9
Q ss_pred HHHhcCChhhhccccCCcHHHHHHHH
Q psy11423 483 VDLYKINFKNLLRLDRVSNKLANNIL 508 (655)
Q Consensus 483 ~DL~~L~~~~L~~l~GfG~Ksa~nll 508 (655)
-||-+.+.++|.+|||+|++.|++|+
T Consensus 55 IniNtA~~~eL~~LpGiGp~~A~~II 80 (134)
T 1s5l_U 55 IDLNNTNIAAFIQYRGLYPTLAKLIV 80 (134)
T ss_dssp EETTTSCGGGGGGSTTCTHHHHHHHH
T ss_pred eeCcccCHHHHHHCCCCCHHHHHHHH
Confidence 46666778888888888888888887
No 83
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=94.58 E-value=0.1 Score=52.28 Aligned_cols=81 Identities=19% Similarity=0.181 Sum_probs=51.1
Q ss_pred HHHHHHHHc-CCC-CChHHHhcCChhhhccccCCcHHHHHHHHHHHHHhcccchhHHHHHhCCCCccHHHHHHHHHhCCC
Q psy11423 468 KMIEKLVNA-NIV-VTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN 545 (655)
Q Consensus 468 k~i~~L~~~-g~I-~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~sk~~~l~r~L~algIpgIG~~~Ak~L~~~fgs 545 (655)
+.+.+|++. |.. -++.+|..++.++|..+ ||+..+|..|.+..+.. .+.+.+
T Consensus 71 ~~~~rL~~~~G~~fPtp~~la~~~~e~Lr~~-G~~~~KA~~I~~~A~~i-------------------------~~~~~~ 124 (233)
T 2h56_A 71 AIYGRVEQLVGGALEKPEQLYRVSDEALRQA-GVSKRKIEYIRHVCEHV-------------------------ESGRLD 124 (233)
T ss_dssp HHHHHHHHHHTSCCCCTHHHHTSCHHHHHHT-TCCHHHHHHHHHHHHHH-------------------------HTTSSC
T ss_pred HHHHHHHHHhCCCCCCHHHHHcCCHHHHHHc-CCCHHHHHHHHHHHHHH-------------------------HhCCCC
Confidence 455566665 421 38899999998889776 89888888777644322 222223
Q ss_pred HHHHHhc----CHHHHhcCCCCCHHHHHHHHHH
Q psy11423 546 LECMFKA----TEEQLLNIPKIGSTTVKAFIKF 574 (655)
Q Consensus 546 l~~l~~a----s~eeL~~i~GIG~~~A~~I~~~ 574 (655)
++.+..+ ..++|.+++|||+++|+.|.-|
T Consensus 125 ~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~ 157 (233)
T 2h56_A 125 FTELEGAEATTVIEKLTAIKGIGQWTAEMFMMF 157 (233)
T ss_dssp HHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 3333222 2356777788888877777765
No 84
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=94.57 E-value=0.049 Score=47.06 Aligned_cols=58 Identities=12% Similarity=0.027 Sum_probs=40.6
Q ss_pred hHHHhcCChhhhccccCCcHHHHHHHHHHHHHhcc-cchhHHHHHhCCCCccHHHHHHHHHh
Q psy11423 482 AVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKL-TTFSRFIYALGIRHVGETTAKELANY 542 (655)
Q Consensus 482 i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~sk~-~~l~r~L~algIpgIG~~~Ak~L~~~ 542 (655)
+.||.+++.++|..++|+|++.|++|++..+.... .++..+ ..+||||++++++|.+.
T Consensus 31 ~i~iN~a~~~~L~~ipGIG~~~A~~Il~~r~~~g~f~s~edL---~~v~Gig~k~~~~l~~~ 89 (98)
T 2edu_A 31 LDLLNEGSARDLRSLQRIGPKKAQLIVGWRELHGPFSQVEDL---ERVEGITGKQMESFLKA 89 (98)
T ss_dssp HHHHHHSCHHHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGGG---GGSTTCCHHHHHHHHHH
T ss_pred CeehhhCCHHHHHHCCCCCHHHHHHHHHHHHhcCCcCCHHHH---HhCCCCCHHHHHHHHHC
Confidence 45677777788888888888888888887654222 233343 46788888888877654
No 85
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=94.56 E-value=0.037 Score=63.51 Aligned_cols=80 Identities=21% Similarity=0.334 Sum_probs=47.2
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhc---cccCCcHHHHHHHHHH---HHHhcccchhHHHHHhCCCCc
Q psy11423 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL---RLDRVSNKLANNILLA---IQKSKLTTFSRFIYALGIRHV 531 (655)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~---~l~GfG~Ksa~nll~~---I~~sk~~~l~r~L~algIpgI 531 (655)
+.+.++|+|+|+++.|+++- ..--.-...+++ .++|+|++.|.+|++. ++.-.+.+...+. .|+||
T Consensus 476 ~L~~l~g~G~Ksa~nLl~aI-----e~sk~~~l~R~L~alGI~~VG~~~Ak~La~~Fgsl~~l~~As~eeL~---~I~GI 547 (667)
T 1dgs_A 476 DLLGLERMGEKSAQNLLRQI-----EESKHRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEASLEELI---EVEEV 547 (667)
T ss_dssp HHHTTSSCCSTTHHHHHHHH-----HHGGGCCHHHHHHHTTCSSCCHHHHHHHHHTTSBHHHHTTCCHHHHH---TSTTC
T ss_pred HHhcccccchhhHHHHHHHH-----HHHhcCcHHHhhHhhccCCccHHHHHHHHHHcCCHHHHHhCCHHHHH---hccCc
Confidence 45667788888888777531 111111112221 5677788888777663 3433444433333 67888
Q ss_pred cHHHHHHHHHhCCC
Q psy11423 532 GETTAKELANYFKN 545 (655)
Q Consensus 532 G~~~Ak~L~~~fgs 545 (655)
|+++|+.|.+.|..
T Consensus 548 G~~~A~sI~~ff~~ 561 (667)
T 1dgs_A 548 GELTARAILETLKD 561 (667)
T ss_dssp CHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhh
Confidence 88888888777764
No 86
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=94.43 E-value=0.16 Score=50.21 Aligned_cols=82 Identities=24% Similarity=0.316 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCCCC------hHHHhcCChhhhccc---cCCcHHHHHHHHHHHHHhcccchhHHHHHhCCCCccHHHHHH
Q psy11423 468 KMIEKLVNANIVVT------AVDLYKINFKNLLRL---DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKE 538 (655)
Q Consensus 468 k~i~~L~~~g~I~~------i~DL~~L~~~~L~~l---~GfG~Ksa~nll~~I~~sk~~~l~r~L~algIpgIG~~~Ak~ 538 (655)
+.+..|.+.|+ .+ +.+|..++.++|..+ -||...+|.+|.+..+.
T Consensus 50 ~~~~~L~~~~~-pt~~~~~t~~~la~~~~e~L~~~ir~~G~~~~KA~~L~~~a~~------------------------- 103 (218)
T 1pu6_A 50 KSLENLKNAFI-LENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGN------------------------- 103 (218)
T ss_dssp HHHHHHHHTTS-SCSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHccC-CCccccccHHHHHhCCHHHHHHHHHHCCCcHHHHHHHHHHHHH-------------------------
Confidence 45566777665 35 899999888777322 37887778777654332
Q ss_pred HHHhCCCHHHH-HhcCHHHHhcCCCCCHHHHHHHHHHh
Q psy11423 539 LANYFKNLECM-FKATEEQLLNIPKIGSTTVKAFIKFI 575 (655)
Q Consensus 539 L~~~fgsl~~l-~~as~eeL~~i~GIG~~~A~~I~~~f 575 (655)
+.+.+++++.+ .....++|.+++|||+++|..|.-|.
T Consensus 104 i~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~a 141 (218)
T 1pu6_A 104 ILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYA 141 (218)
T ss_dssp HHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHhcCChhhccchHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 11222222222 12356788889999999988887753
No 87
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=94.42 E-value=0.063 Score=56.72 Aligned_cols=62 Identities=23% Similarity=0.287 Sum_probs=47.4
Q ss_pred hhhccccCCcHHHHHHHHHHHHHhcc--------cc-hhHHHHHhCCCCccHHHHHHHHHh-CCCHHHHHhc
Q psy11423 491 KNLLRLDRVSNKLANNILLAIQKSKL--------TT-FSRFIYALGIRHVGETTAKELANY-FKNLECMFKA 552 (655)
Q Consensus 491 ~~L~~l~GfG~Ksa~nll~~I~~sk~--------~~-l~r~L~algIpgIG~~~Ak~L~~~-fgsl~~l~~a 552 (655)
.+|..|||+|++.|++|.+-++.-+- .+ ..-+..-+.|||||+++|+++-+. +.|++.|..+
T Consensus 57 ~~l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~~Gi~tledL~~a 128 (335)
T 2fmp_A 57 AEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKN 128 (335)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHTC
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHHHh
Confidence 45899999999999999988774221 11 223444459999999999988765 6699999886
No 88
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=94.33 E-value=0.2 Score=50.57 Aligned_cols=118 Identities=20% Similarity=0.288 Sum_probs=77.1
Q ss_pred CHHHHHhhccccccccccccCCCCHHHHHHHHHcCCCCChHHHhc----CChhhhccccCCcHHHHHHHHHHHHH---hc
Q psy11423 443 CIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYK----INFKNLLRLDRVSNKLANNILLAIQK---SK 515 (655)
Q Consensus 443 C~~q~~~~i~~F~sk~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~----L~~~~L~~l~GfG~Ksa~nll~~I~~---sk 515 (655)
.|.-.-+-|.||-|.. +|-.-.-.-|+.+|++|-++. +-|. +....|.+-+|.|.|+|+.|+.++-+ .|
T Consensus 363 spdaadeliehfesia--gilatdleeiermyeegrlse--eayraaveiqlaeltkkegvgrktaerllrafgnpervk 438 (519)
T 2csb_A 363 SPDAADELIEHFESIA--GILATDLEEIERMYEEGRLSE--EAYRAAVEIQLAELTKKEGVGRKTAERLLRAFGNPERVK 438 (519)
T ss_dssp CHHHHHHHHHHHSSHH--HHHTSCHHHHHHHHHHTSSCH--HHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHSSHHHHH
T ss_pred CcchHHHHHHHHHHHH--HHHhccHHHHHHHHHcccccH--HHHHHHHHHHHHHHhhhcccchhHHHHHHHHhCCHHHHH
Confidence 6667778889998843 444455677899999997653 3343 22356777799999999999988732 11
Q ss_pred ----ccch----------hHHHHHh--------CCCCccHHHHHHHHHhCCCHHHHHhcCHHHHhcCCCCCH
Q psy11423 516 ----LTTF----------SRFIYAL--------GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGS 565 (655)
Q Consensus 516 ----~~~l----------~r~L~al--------gIpgIG~~~Ak~L~~~fgsl~~l~~as~eeL~~i~GIG~ 565 (655)
...+ .|+|.+| .|.||...+|.+|+++||....+..|..++|.. +|+..
T Consensus 439 qlarefeieklasvegvgervlrslvpgyaslisirgidreraerllkkyggyskvreagveelre-dgltd 509 (519)
T 2csb_A 439 QLAREFEIEKLASVEGVGERVLRSLVPGYASLISIRGIDRERAERLLKKYGGYSKVREAGVEELRE-DGLTD 509 (519)
T ss_dssp HHHHTTCHHHHHTSTTCSHHHHHHHSTTHHHHHTSTTCCHHHHHHHHHHHTSHHHHHTSCHHHHHH-TTCCH
T ss_pred HHHHHHhHHHHhhccchHHHHHHHhccchhhheeeccccHHHHHHHHHHhCChhHHHHhhHHHHHH-cCCcH
Confidence 1111 1333332 567777777777777777777777777666654 34444
No 89
>3rtx_A MRNA-capping enzyme; guanylyltransferase, RNA polymerase II CTD, lysyl-N-GMP, NUC mRNA capping, transferase; HET: SEP GUN; 2.81A {Mus musculus} PDB: 3s24_A
Probab=94.31 E-value=0.079 Score=56.15 Aligned_cols=154 Identities=15% Similarity=0.123 Sum_probs=82.4
Q ss_pred eEEEEEecceeEEEEEEe-CCEEeEEEecCCCCccchhhh-hhhhcccCCcccccCCCCceEEEEEEEEeehhhHHHHHH
Q psy11423 119 EYIAELKFDGIAVNLRYE-YGYLKQASTRGDGNIGENITT-NIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196 (655)
Q Consensus 119 ~~~~e~KiDGlsi~l~Y~-~G~l~~a~TRGdG~~GeDvT~-n~~~i~~iP~~l~~~~~p~~~evRGEv~~~~~~F~~~n~ 196 (655)
.|++++|.||.-+.+... +|. +.+.||+ |+++|. +.+. +.+.. +. ..+....+-||+++...+
T Consensus 64 ~y~v~~K~DG~R~ll~i~~~~~-v~L~sR~----~~~~~~~~~~F-P~~~~-~~--~~~~~tvLDGElV~~~~~------ 128 (343)
T 3rtx_A 64 PYKVSWKADGTRYMMLIDGTNE-VFMIDRD----NSVFHVSNLEF-PFRKD-LR--MHLSNTLLDGEMIIDKVN------ 128 (343)
T ss_dssp CEEEEEECCCEEEEEEECSTTC-EEEECTT----CCEEEETTCCC-EETTE-EE--EECCSEEEEEEEEEEESS------
T ss_pred CEEEEECCCceEEEEEEEcCCE-EEEEeCC----CCeEEeccccC-Ccchh-hh--ccCCCeEEEEEEEEecCC------
Confidence 699999999999988766 454 6889995 556653 2211 11110 11 023457899999986421
Q ss_pred HHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEecccccCCCC-CCCHHHHHHHHHhC-----------C----
Q psy11423 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNM-PSSHSELLNWYQKI-----------G---- 260 (655)
Q Consensus 197 ~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~~~~~~~~~~-~~~~~e~l~~L~~~-----------G---- 260 (655)
| ...+.|++|++...++.++ ..+..+.++.|.+. |
T Consensus 129 -----g------------------------~~~~~~~~FDlL~~~G~dl~~~pl~eR~~~L~~~i~~p~~~~~~~~~~~~ 179 (343)
T 3rtx_A 129 -----G------------------------QAVPRYLIYDIIKFNAQPVGDCDFNIRLQCIEREIISPRHEKMKTGLIDK 179 (343)
T ss_dssp -----S------------------------SEEEEEEEEEEEEBTTBCGGGSCHHHHHHHHHHHTHHHHHHHHHHSSCCT
T ss_pred -----C------------------------cEeeEEEEEEEEeECCcCcccCCHHHHHHHHHHHhhhHHHHHhhcccccc
Confidence 1 1246999999987666443 24677777777642 2
Q ss_pred ----CCCC-CCceeeCCHHHHHHHHHHHHHhhcCCCCccceEEEEECChhhhhhhCCCCCCCCceEeecCCcc
Q psy11423 261 ----LSIC-GEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSK 328 (655)
Q Consensus 261 ----F~~~-~~~~~~~~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~~~~~~~~lG~ts~~PrwaiA~Kf~~~ 328 (655)
|.+. .........+++.. . +....+.+..||+|++-.+ .+. ++....-+-||.+..
T Consensus 180 ~~~pf~vr~K~~~~~~~~~~ll~--~---~~~~~l~~~~dGlIf~~~~-~Y~------~G~~~~~lKwKp~~~ 240 (343)
T 3rtx_A 180 TQEPFSVRPKQFFDINISRKLLE--G---NFAKEVSHEMDGLIFQPIG-KYK------PGRCDDILKWKPPSL 240 (343)
T ss_dssp TTSSSEEEECCCEEGGGHHHHSC--C-------------CEEEEEESS-CCC------CEEEEEEEEECCSTT
T ss_pred cCCCcEEEEEEeEehhhHHHHHh--h---hhHhhcCCCCCeEEEEECc-cCc------CCCCcceEEEecCcc
Confidence 1111 00111122233321 0 1234678899999999887 443 222234466776554
No 90
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=94.29 E-value=0.039 Score=47.92 Aligned_cols=49 Identities=16% Similarity=0.086 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHHH
Q psy11423 464 GLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (655)
Q Consensus 464 GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~ 513 (655)
+|+....+-|-.+| |.++.||...+.++|+++++||+||.+.|.+.++.
T Consensus 30 ~LSvRs~NcLkrag-I~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~ 78 (98)
T 1coo_A 30 ELTVRSANCLKAEA-IHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS 78 (98)
T ss_dssp TCCTTTHHHHHTTT-CCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcC-CCcHHHHHhCCHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 67888888998777 79999999999999999999999999999998874
No 91
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=94.29 E-value=0.019 Score=56.79 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=41.6
Q ss_pred cccCCCCHHHHHHHHHcCCCCChH-HHhcCChhhhccccCCcHHHHHHHHHHHHH
Q psy11423 460 MNIIGLGKKMIEKLVNANIVVTAV-DLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (655)
Q Consensus 460 l~I~GLG~k~i~~L~~~g~I~~i~-DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~ 513 (655)
..|+|+|||++..+++.-....+. .+..=+.+.|.++||+|+|+|++|+..++.
T Consensus 91 ~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~elk~ 145 (212)
T 2ztd_A 91 LSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRD 145 (212)
T ss_dssp HTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTT
T ss_pred cCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 349999999999999865333322 133345788999999999999999988854
No 92
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=94.27 E-value=0.0079 Score=68.25 Aligned_cols=84 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred cccccCCC------CHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHH---HhcccchhHHHHHhCC
Q psy11423 458 KAMNIIGL------GKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQ---KSKLTTFSRFIYALGI 528 (655)
Q Consensus 458 ~~l~I~GL------G~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~---~sk~~~l~r~L~algI 528 (655)
+.+.++|+ |+|.+++|+++---+.-..|-.+=. =+.++|+|++.+..|++... .-++.+...+ ..|
T Consensus 492 ~L~~l~~~~~~~g~g~ksa~nLl~aIe~sk~~~l~r~L~--aLGIp~VG~~~ak~La~~Fgsle~L~~As~eeL---~~I 566 (615)
T 3sgi_A 492 DLLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLV--ALSIRHVGPTAARALATEFGSLDAIAAASTDQL---AAV 566 (615)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhccccccccCccchHHHHHHHHHHHhcCCCHHHHHH--HcCCCCCCHHHHHHHHHHcCCHHHHHhCCHHHH---hhC
Confidence 45666644 5788888876532111111111000 14567888888887776542 2222222211 267
Q ss_pred CCccHHHHHHHHHhCCCH
Q psy11423 529 RHVGETTAKELANYFKNL 546 (655)
Q Consensus 529 pgIG~~~Ak~L~~~fgsl 546 (655)
||||+++|+.|.+.|...
T Consensus 567 ~GIG~~~A~sI~~ff~~~ 584 (615)
T 3sgi_A 567 EGVGPTIAAAVTEWFAVD 584 (615)
T ss_dssp ------------------
T ss_pred CCCCHHHHHHHHHHHcCH
Confidence 888888888888877643
No 93
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=94.24 E-value=0.042 Score=50.21 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=35.3
Q ss_pred CCCCccHHHHHHHHHh--CCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHhc
Q psy11423 527 GIRHVGETTAKELANY--FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~--fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f~ 576 (655)
.+||||++.|++|.++ |. +.|||.+++|||++..+.+.++.+
T Consensus 67 ~LpGiGp~~A~~II~~GpF~--------svedL~~V~GIg~k~~e~l~~~~~ 110 (134)
T 1s5l_U 67 QYRGLYPTLAKLIVKNAPYE--------SVEDVLNIPGLTERQKQILRENLE 110 (134)
T ss_dssp GSTTCTHHHHHHHHHTCCCS--------SGGGGGGCTTCCHHHHHHHHHHHT
T ss_pred HCCCCCHHHHHHHHHcCCCC--------CHHHHHhCCCCCHHHHHHHHHhhc
Confidence 5899999999999976 55 458899999999998888877654
No 94
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=94.15 E-value=0.034 Score=48.25 Aligned_cols=56 Identities=20% Similarity=0.317 Sum_probs=38.3
Q ss_pred HHHhcCChhhhccccCCcHHHHHHHHHHHHHhcccchhHHHHHhCCCCccHHHHHHHHHhCCCHHHHHhcCHHHHhcCCC
Q psy11423 483 VDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPK 562 (655)
Q Consensus 483 ~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~sk~~~l~r~L~algIpgIG~~~Ak~L~~~fgsl~~l~~as~eeL~~i~G 562 (655)
-||-+.+.++|..+||+|++.|++|++ + | .|.+ .++|.+++|
T Consensus 18 vdiNtAs~~eL~~lpGIG~~~A~~IV~------~---------------G---------pF~s--------~edL~~V~G 59 (97)
T 3arc_U 18 IDLNNTNIAAFIQYRGLYPTLAKLIVK------N---------------A---------PYES--------VEDVLNIPG 59 (97)
T ss_dssp EETTTSCGGGGGGSTTCTTHHHHHHHH------H---------------C---------CCSS--------GGGGGGCTT
T ss_pred eeCCcCCHHHHhHCCCCCHHHHHHHHH------c---------------C---------CCCC--------HHHHHhccC
Confidence 355666677777777777777777775 0 1 2553 467778888
Q ss_pred CCHHHHHHHHHHhc
Q psy11423 563 IGSTTVKAFIKFIN 576 (655)
Q Consensus 563 IG~~~A~~I~~~f~ 576 (655)
||+++.+++..|+.
T Consensus 60 ig~~~~e~l~~~l~ 73 (97)
T 3arc_U 60 LTERQKQILRENLE 73 (97)
T ss_dssp CCHHHHHHHHHTGG
T ss_pred CCHHHHHHHHHHhc
Confidence 88888888877654
No 95
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=93.89 E-value=0.094 Score=56.35 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=63.6
Q ss_pred CHHHHHhhccccccccccccCCCCHHHHHHHHHcCCCCChHHHh-cCC-hhhhccccCCcHHHHHHHHHHHHHhcccchh
Q psy11423 443 CIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY-KIN-FKNLLRLDRVSNKLANNILLAIQKSKLTTFS 520 (655)
Q Consensus 443 C~~q~~~~i~~F~sk~~l~I~GLG~k~i~~L~~~g~I~~i~DL~-~L~-~~~L~~l~GfG~Ksa~nll~~I~~sk~~~l~ 520 (655)
-.+..++.|.. .|.+.| .+-.+...-.+- ..+..+= .++ ..+|..|||+|++.|++|.+-++.-+-..+.
T Consensus 38 ~i~~~L~~ia~-----~~e~~g-~~~rv~AYr~Aa--~~l~~l~~~i~~~~~l~~lpGIG~~ia~kI~E~l~tG~~~~le 109 (381)
T 1jms_A 38 LFTDALDILAE-----NDELRE-NEGSCLAFMRAS--SVLKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAK 109 (381)
T ss_dssp HHHHHHHHHHH-----HHHHTT-CHHHHHHHHHHH--HHHHTCSSCCCSGGGGTTCSSCCHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHH-----HHHhhC-CcHHHHHHHHHH--HHHHhCCccccCHHHHhcCCCCcHHHHHHHHHHHHcCCcHHHH
Confidence 34555565554 456778 776666553321 1111111 121 3459999999999999999887753222222
Q ss_pred --------H-HHHHhCCCCccHHHHHHHHHh-CCCHHHHHh
Q psy11423 521 --------R-FIYALGIRHVGETTAKELANY-FKNLECMFK 551 (655)
Q Consensus 521 --------r-~L~algIpgIG~~~Ak~L~~~-fgsl~~l~~ 551 (655)
. +..-+.|||||+++|+++-+. +.|++.|..
T Consensus 110 ~l~~d~~~~~l~~l~~I~GvGpk~a~~ly~~Gi~tledL~~ 150 (381)
T 1jms_A 110 AVLNDERYKSFKLFTSVFGVGLKTAEKWFRMGFRTLSKIQS 150 (381)
T ss_dssp HHHHCHHHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred HHhcCcchhHHHHHHccCCCCHHHHHHHHHcCCCcHHHHHh
Confidence 2 333459999999999998765 668888883
No 96
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=93.86 E-value=0.095 Score=55.92 Aligned_cols=100 Identities=12% Similarity=0.088 Sum_probs=63.1
Q ss_pred CHHHHHhhccccccccccccCCCCHHHHHHHHHcCCCCChHHHhc-C-ChhhhccccCCcHHHHHHHHHHHHHhcccchh
Q psy11423 443 CIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYK-I-NFKNLLRLDRVSNKLANNILLAIQKSKLTTFS 520 (655)
Q Consensus 443 C~~q~~~~i~~F~sk~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~-L-~~~~L~~l~GfG~Ksa~nll~~I~~sk~~~l~ 520 (655)
-.+..++.|.. .|.+.| .+=.+...-.+- ..+..+=. + +..+|..|||+|++.|++|.+-++.-+-..+.
T Consensus 19 ~i~~~L~~ia~-----~~e~~g-~~~r~~AYr~Aa--~~l~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le 90 (360)
T 2ihm_A 19 LLSEALETLAE-----AAGFEA-NEGRLLSFSRAA--SVLKSLPCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVK 90 (360)
T ss_dssp HHHHHHHHHHH-----HHHHTT-CHHHHHHHHHHH--HHHHHCSSCCCSGGGGTTCTTCCHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHHHHHHHHH-----HHHHcC-CcHHHHHHHHHH--HHHHhCCcccCCHHHHhcCCCCCHHHHHHHHHHHHcCChHHHH
Confidence 34555566654 456777 776666553321 11111111 2 23469999999999999999888743222222
Q ss_pred H---------HHHHhCCCCccHHHHHHHHHh-CCCHHHHH
Q psy11423 521 R---------FIYALGIRHVGETTAKELANY-FKNLECMF 550 (655)
Q Consensus 521 r---------~L~algIpgIG~~~Ak~L~~~-fgsl~~l~ 550 (655)
. +..-+.|||||+++|+++-+. +.|++.|.
T Consensus 91 ~L~~d~~~~~l~~l~~I~GvG~kta~~l~~~Gi~tledL~ 130 (360)
T 2ihm_A 91 QVRCSERYQTMKLFTQVFGVGVKTANRWYQEGLRTLDELR 130 (360)
T ss_dssp HHHHSHHHHHHHHHHTSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred HHhcccchHHHHHHhCCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 1 233359999999999988765 66888887
No 97
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=93.75 E-value=0.038 Score=47.98 Aligned_cols=48 Identities=8% Similarity=0.153 Sum_probs=39.6
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHH
Q psy11423 457 RKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQ 512 (655)
Q Consensus 457 k~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~ 512 (655)
...+.++|+|+++++++++.|-.+++ ++|..++|+|++..++|...+.
T Consensus 26 ~eL~~lpGIG~~~A~~IV~~GpF~s~--------edL~~V~Gig~~~~e~l~~~l~ 73 (97)
T 3arc_U 26 AAFIQYRGLYPTLAKLIVKNAPYESV--------EDVLNIPGLTERQKQILRENLE 73 (97)
T ss_dssp GGGGGSTTCTTHHHHHHHHHCCCSSG--------GGGGGCTTCCHHHHHHHHHTGG
T ss_pred HHHhHCCCCCHHHHHHHHHcCCCCCH--------HHHHhccCCCHHHHHHHHHHhc
Confidence 45668999999999999998877765 5566789999999988877654
No 98
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=93.66 E-value=0.13 Score=41.93 Aligned_cols=52 Identities=27% Similarity=0.298 Sum_probs=44.0
Q ss_pred HHHHHhCCCCccHHHHHHHHHh-CCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHh
Q psy11423 521 RFIYALGIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575 (655)
Q Consensus 521 r~L~algIpgIG~~~Ak~L~~~-fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f 575 (655)
-|...+ ||++..+++|.+. |.|++.+..++.++|..|+||++.+++.|++--
T Consensus 7 ~f~~~l---gI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A 59 (70)
T 1u9l_A 7 TFTKYL---DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERA 59 (70)
T ss_dssp HHHHHH---TCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHhC---CCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHH
Confidence 345555 5668899888864 999999999999999999999999999998754
No 99
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=93.29 E-value=0.078 Score=56.01 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=48.7
Q ss_pred CcHHHHHHHHHHHHHhcccchhHHHHHhCCCCccHHHHHHHHHh--CCCHHHHHh-------cCHHHHhcCCCCCHHHHH
Q psy11423 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY--FKNLECMFK-------ATEEQLLNIPKIGSTTVK 569 (655)
Q Consensus 499 fG~Ksa~nll~~I~~sk~~~l~r~L~algIpgIG~~~Ak~L~~~--fgsl~~l~~-------as~eeL~~i~GIG~~~A~ 569 (655)
|.-+...+-...|+.. ..++........|||||+++|++|.+. -|.+..+.. .+..+|.+|+|||+++|.
T Consensus 34 ~rv~AYr~Aa~~l~~l-~~~i~~~~~l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~ 112 (335)
T 2fmp_A 34 HKYNAYRKAASVIAKY-PHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAAR 112 (335)
T ss_dssp HHHHHHHHHHHHHHHC-SSCCCCHHHHHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CccccCHHHHhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHH
Confidence 4444444444445432 223444444569999999999988774 345444433 245789999999999999
Q ss_pred HHHH
Q psy11423 570 AFIK 573 (655)
Q Consensus 570 ~I~~ 573 (655)
.+++
T Consensus 113 ~l~~ 116 (335)
T 2fmp_A 113 KFVD 116 (335)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
No 100
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=93.17 E-value=0.35 Score=48.36 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=54.0
Q ss_pred HHHHHHHc-CC---CCChHHHhcCChhhhccccCCcHHHHHHHHHHHHHhcccchhHHHHHhCCCCccHHHHHHHHHhCC
Q psy11423 469 MIEKLVNA-NI---VVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFK 544 (655)
Q Consensus 469 ~i~~L~~~-g~---I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~sk~~~l~r~L~algIpgIG~~~Ak~L~~~fg 544 (655)
.+.+|.+. |- --++++|..++.++|..+ ||+..+|..|.+.-+. +.. | .+.
T Consensus 81 ~~~rL~~~~G~~~~fPtpe~la~~~~e~Lr~~-Gl~~~Ka~~l~~~A~~---------~~~-g--------------~~p 135 (232)
T 4b21_A 81 IINKFCTQCSDNDEFPTPKQIMETDVETLHEC-GFSKLKSQEIHIVAEA---------ALN-K--------------QIP 135 (232)
T ss_dssp HHHHHHHHHCSSSSCCCHHHHHTSCHHHHHTT-TCCHHHHHHHHHHHHH---------HHT-T--------------CSC
T ss_pred HHHHHHHHhCCCCCCCCHHHHHcCCHHHHHHc-CCcHHHHHHHHHHHHH---------HHh-C--------------CCC
Confidence 44555554 41 368999999999999886 9998888877654322 111 0 122
Q ss_pred CHHHHHhcC----HHHHhcCCCCCHHHHHHHHHH
Q psy11423 545 NLECMFKAT----EEQLLNIPKIGSTTVKAFIKF 574 (655)
Q Consensus 545 sl~~l~~as----~eeL~~i~GIG~~~A~~I~~~ 574 (655)
+++.+...+ .++|.+++|||+++|+.|.-|
T Consensus 136 ~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~ill~ 169 (232)
T 4b21_A 136 SKSEIEKMSEEELMESLSKIKGVKRWTIEMYSIF 169 (232)
T ss_dssp CHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 344444443 367899999999999998876
No 101
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=93.17 E-value=0.094 Score=55.94 Aligned_cols=74 Identities=9% Similarity=0.078 Sum_probs=47.3
Q ss_pred CcHHHHHHHHHHHHHhcccchhHHHHHhCCCCccHHHHHHHHHh--CCCHHHHHhc-------CHHHHhcCCCCCHHHHH
Q psy11423 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY--FKNLECMFKA-------TEEQLLNIPKIGSTTVK 569 (655)
Q Consensus 499 fG~Ksa~nll~~I~~sk~~~l~r~L~algIpgIG~~~Ak~L~~~--fgsl~~l~~a-------s~eeL~~i~GIG~~~A~ 569 (655)
|.-+...+-...|+.. ..++........|||||+++|++|.+. -|.+..+... ...+|.+|+|||+++|+
T Consensus 38 ~r~~AYr~Aa~~l~~l-~~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~ 116 (360)
T 2ihm_A 38 GRLLSFSRAASVLKSL-PCPVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTAN 116 (360)
T ss_dssp HHHHHHHHHHHHHHHC-SSCCCSGGGGTTCTTCCHHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CcccCCHHHHhcCCCCCHHHHHHHHHHHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHH
Confidence 3333333334444432 123333333569999999999988763 4555554432 24689999999999999
Q ss_pred HHHH
Q psy11423 570 AFIK 573 (655)
Q Consensus 570 ~I~~ 573 (655)
.+++
T Consensus 117 ~l~~ 120 (360)
T 2ihm_A 117 RWYQ 120 (360)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
No 102
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=93.11 E-value=0.086 Score=56.68 Aligned_cols=55 Identities=9% Similarity=0.108 Sum_probs=40.6
Q ss_pred hhHHHHHhCCCCccHHHHHHHHHh--CCCHHHHHhc-------CHHHHhcCCCCCHHHHHHHHH
Q psy11423 519 FSRFIYALGIRHVGETTAKELANY--FKNLECMFKA-------TEEQLLNIPKIGSTTVKAFIK 573 (655)
Q Consensus 519 l~r~L~algIpgIG~~~Ak~L~~~--fgsl~~l~~a-------s~eeL~~i~GIG~~~A~~I~~ 573 (655)
+........|||||+++|++|.+. -|.+..+... ...+|.+|+|||+++|..+++
T Consensus 76 i~~~~~l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~ly~ 139 (381)
T 1jms_A 76 ITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFR 139 (381)
T ss_dssp CCSGGGGTTCSSCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHHHH
T ss_pred ccCHHHHhcCCCCcHHHHHHHHHHHHcCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHHHH
Confidence 333334569999999999988773 4555544432 246899999999999999876
No 103
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=92.99 E-value=0.25 Score=49.16 Aligned_cols=44 Identities=16% Similarity=0.080 Sum_probs=30.9
Q ss_pred HHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHH
Q psy11423 468 KMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQ 512 (655)
Q Consensus 468 k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~ 512 (655)
+.+.+|.+.-.--++++|..++.++|..+ ||+..++..|.+.-+
T Consensus 81 ~~~~rL~~~~G~ptp~~la~~~~e~Lr~~-G~~~~KA~~i~~lA~ 124 (225)
T 2yg9_A 81 AIYGRLEGLPGGVVPAALLKVSGDDLRGV-GLSWAKVRTVQAAAA 124 (225)
T ss_dssp HHHHHHHTSTTCSCHHHHTTSCHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCHHHHHcCCHHHHHHC-CCcHHHHHHHHHHHH
Confidence 34555655522368899998988888776 888878877766443
No 104
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=92.50 E-value=0.068 Score=47.76 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=42.6
Q ss_pred CccHHHHHHHHHh-CCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHh
Q psy11423 530 HVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575 (655)
Q Consensus 530 gIG~~~Ak~L~~~-fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f 575 (655)
|||+..+++|.+. |.+++.|..++..+|.+++|||+..|+.|.+..
T Consensus 32 GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA 78 (114)
T 1b22_A 32 GINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEA 78 (114)
T ss_dssp TCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHH
Confidence 8899999999975 999999999999999999999999999998764
No 105
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=92.02 E-value=0.028 Score=56.09 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=0.0
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHH
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAI 511 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I 511 (655)
..+|+|+|++++++|.+.= .|+..|...+.++|.++ |+|++.|++|.+.+
T Consensus 175 L~~IpGIG~k~ak~Ll~~F--GSl~~i~~As~eeL~~V-GIG~~~A~~I~~~f 224 (226)
T 3c65_A 175 LDDIPGVGEKRKKALLNYF--GSVKKMKEATVEELQRA-NIPRAVAEKIYEKL 224 (226)
T ss_dssp -----------------------------------------------------
T ss_pred ccccCCCCHHHHHHHHHHh--CCHHHHHhCCHHHHHHc-CCCHHHHHHHHHHh
Confidence 5579999999999999862 57788888899999999 99999999998765
No 106
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=91.75 E-value=0.18 Score=53.20 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=48.6
Q ss_pred CcHHHHHHHHHHHHHhcccchhHHHHHhCCCCccHHHHHHHHHh--CCCHHHHHhcC-----HHHHhcCCCCCHHHHHHH
Q psy11423 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANY--FKNLECMFKAT-----EEQLLNIPKIGSTTVKAF 571 (655)
Q Consensus 499 fG~Ksa~nll~~I~~sk~~~l~r~L~algIpgIG~~~Ak~L~~~--fgsl~~l~~as-----~eeL~~i~GIG~~~A~~I 571 (655)
|.-..-.+-...|+.. ..++........|||||+++|++|.+. -|.+..+.... .+.|.+|+|||+++|..+
T Consensus 34 ~r~~AYr~Aa~~l~~l-~~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l 112 (335)
T 2bcq_A 34 WRALGYAKAINALKSF-HKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMW 112 (335)
T ss_dssp HHHHHHHHHHHHHHSC-CSCCCCHHHHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCTTHHHHHHHHTSTTCCHHHHHHH
T ss_pred HhHHHHHHHHHHHHhC-CccccCHHHHhcCCCccHHHHHHHHHHHHcCCchHHHHHhhhhHHHHHHhcCCCcCHHHHHHH
Confidence 4444445445555432 233444445669999999999988764 45555554432 244569999999999998
Q ss_pred HH
Q psy11423 572 IK 573 (655)
Q Consensus 572 ~~ 573 (655)
++
T Consensus 113 ~~ 114 (335)
T 2bcq_A 113 YQ 114 (335)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 107
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=91.74 E-value=0.16 Score=54.16 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=47.8
Q ss_pred ccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHHHh
Q psy11423 461 NIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKS 514 (655)
Q Consensus 461 ~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~s 514 (655)
.||+||+++++.|+++= .++..+++.+.++|...+|+|++.|..|.+++..-
T Consensus 319 ~IPrl~~~iae~Lv~~F--GsLq~Il~AS~eEL~~VeGIGe~rAr~IregL~r~ 370 (377)
T 3c1y_A 319 TVARIPLSIGYNVVRMF--KTLDQISKASVEDLKKVEGIGEKRARAISESISSL 370 (377)
T ss_dssp HTSCCCHHHHHHHHHHH--CSHHHHTTCCHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHh--CCHHHHHhCCHHHHHhccCccHHHHHHHHHHHHHH
Confidence 49999999999999974 48999999999999999999999999999999764
No 108
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=91.31 E-value=0.51 Score=48.69 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=45.9
Q ss_pred CChHHHhcCChhhhccccCCcHHHHHHHHHHHHHhcccchhHHHHHhCCCCccHHHHHHHHHhCCCHHHHHhcC----HH
Q psy11423 480 VTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT----EE 555 (655)
Q Consensus 480 ~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~sk~~~l~r~L~algIpgIG~~~Ak~L~~~fgsl~~l~~as----~e 555 (655)
-++++|..++.++|..+ |+|-| |..|.+. |+.+++...+++.+...+ .+
T Consensus 159 Ptpe~la~~~~e~L~~~-g~g~R-a~~I~~~-------------------------A~~i~~g~~~l~~l~~~~~~~~~~ 211 (290)
T 3i0w_A 159 PTVDKLHEFTEKDFEEC-TAGFR-AKYLKDT-------------------------VDRIYNGELNLEYIKSLNDNECHE 211 (290)
T ss_dssp CCHHHHTTCCHHHHHHT-TCGGG-HHHHHHH-------------------------HHHHHTTSSCHHHHHHSCHHHHHH
T ss_pred CcHHHHHCCCHHHHHHc-CCchH-HHHHHHH-------------------------HHHHHhCCCCHHHHhcCCHHHHHH
Confidence 58899988888888885 78853 6555543 222333333444444433 35
Q ss_pred HHhcCCCCCHHHHHHHHHH-hcC
Q psy11423 556 QLLNIPKIGSTTVKAFIKF-INQ 577 (655)
Q Consensus 556 eL~~i~GIG~~~A~~I~~~-f~~ 577 (655)
+|.+++|||+++|+.|.-| |..
T Consensus 212 ~L~~lpGIG~~TA~~ill~~lg~ 234 (290)
T 3i0w_A 212 ELKKFMGVGPQVADCIMLFSMQK 234 (290)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHCC
T ss_pred HHHhCCCcCHHHHHHHHHHhCCC
Confidence 6888888888888888765 443
No 109
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=91.15 E-value=0.061 Score=47.37 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=43.8
Q ss_pred CCCCeEecccccCccEEEecCCCCchHHHHHHcCCeeeCHHHHHHHHh
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~~g~K~~kA~~lgi~ii~e~~f~~~l~ 647 (655)
.+||+++..++++++.|||.+..+.|+..|.+.||+|++.+-|.+-+.
T Consensus 37 ~~GG~~~~~~~~~~THLV~~~~~~~K~~~a~~~~i~IV~~~Wl~dsi~ 84 (109)
T 2cou_A 37 MQGGSYLPVGDERCTHLIVEENTVKDLPFEPSKKLFVVKQEWFWGSIQ 84 (109)
T ss_dssp HHTCBCCCTTCTTCSEEEECTTTCSSCSSCCCTTSEEECHHHHHHHHH
T ss_pred HcCCEEecccCCCccEEEEeCCccHHHHHHHHCCCeEecHHHHHHHHH
Confidence 789999999999999999988778899999999999999999988764
No 110
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=91.10 E-value=0.07 Score=47.49 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=44.4
Q ss_pred CCCCeEecccccCccEEEecCCCCchHHHHHHcCCeeeCHHHHHHHHh
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~~g~K~~kA~~lgi~ii~e~~f~~~l~ 647 (655)
.+||+++..++++++.|||.+..+.|+..|++.||+|++.+-|.+-+.
T Consensus 46 ~~GG~~~~~l~~~cTHLV~~~~~~~K~~~A~~~~i~IVs~eWl~dsi~ 93 (112)
T 3l46_A 46 MQGGKYLPLGDERCTHLVVEENIVKDLPFEPSKKLYVVKQEWFWGSIQ 93 (112)
T ss_dssp HTTCEECCTTCTTCSEEEECTTTBSSCSSCCCSSCEEEEHHHHHHHHH
T ss_pred HcCCEECcccCCCceEEEecCCchhhHHHHHHCCeeEecHHHHHHHHH
Confidence 889999999999999999998888889889999999999999988774
No 111
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.79 E-value=0.43 Score=49.30 Aligned_cols=56 Identities=20% Similarity=0.360 Sum_probs=50.1
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHHHh
Q psy11423 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKS 514 (655)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~s 514 (655)
+..+++||++..+.+|-++| +.++.|+..+...+|..+.|+.++.+++++.+..+.
T Consensus 4 ~~~~l~gi~~~~~~kL~~~g-i~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~~~ 59 (322)
T 2i1q_A 4 NLTDLPGVGPSTAEKLVEAG-YIDFMKIATATVGELTDIEGISEKAAAKMIMGARDL 59 (322)
T ss_dssp -CTTSTTCCHHHHHHHHHHT-CCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred cHhhcCCCCHHHHHHHHHcC-CCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHHHh
Confidence 45678999999999999999 589999999999999999999999999999887653
No 112
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=89.38 E-value=0.8 Score=45.25 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=44.1
Q ss_pred HHHHHHHcCCCCChHHHhcCChhhhccc---cCCcHHHHHHHHHHHHHhcccchhHHHHHhCCCCccHHHHHHHHHhCCC
Q psy11423 469 MIEKLVNANIVVTAVDLYKINFKNLLRL---DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN 545 (655)
Q Consensus 469 ~i~~L~~~g~I~~i~DL~~L~~~~L~~l---~GfG~Ksa~nll~~I~~sk~~~l~r~L~algIpgIG~~~Ak~L~~~fgs 545 (655)
....|++. ..++.+|..++.++|..+ -||...+|.+|.+..+..... .+ ++
T Consensus 56 ~~~~l~~~--fptp~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~~i~~~--------~~----------------g~ 109 (221)
T 1kea_A 56 IYDKFFVK--YKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVIND--------YG----------------GR 109 (221)
T ss_dssp HHHHHHHH--CCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHH--------HT----------------TS
T ss_pred HHHHHHHH--CCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--------hC----------------CC
Confidence 33445544 258899998888777332 277777787776654332110 00 01
Q ss_pred HHHHHhcCHHHHhcCCCCCHHHHHHHHHH
Q psy11423 546 LECMFKATEEQLLNIPKIGSTTVKAFIKF 574 (655)
Q Consensus 546 l~~l~~as~eeL~~i~GIG~~~A~~I~~~ 574 (655)
++ .+.++|.+++|||+++|..|..|
T Consensus 110 ~p----~~~~~L~~lpGIG~~TA~~il~~ 134 (221)
T 1kea_A 110 VP----RNRKAILDLPGVGKYTCAAVMCL 134 (221)
T ss_dssp CC----SCHHHHHTSTTCCHHHHHHHHHH
T ss_pred ch----HHHHHHHhCCCCcHHHHHHHHHH
Confidence 11 23566777777777777777664
No 113
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=88.39 E-value=1 Score=44.77 Aligned_cols=70 Identities=17% Similarity=0.167 Sum_probs=45.0
Q ss_pred CChHHHhcCChhhhccccCCcHHHHHHHHHHHHHhcccchhHHHHHhCCCCccHHHHHHHHHhCCCHHHHHhcC----HH
Q psy11423 480 VTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT----EE 555 (655)
Q Consensus 480 ~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~sk~~~l~r~L~algIpgIG~~~Ak~L~~~fgsl~~l~~as----~e 555 (655)
-++.+|..++.++|..+ ||+..++..|.+.-+... .-. +.+++.+...+ .+
T Consensus 85 Ptp~~la~~~~e~Lr~~-G~~~rKa~~i~~~A~~~~---------~g~---------------~p~~~~l~~~~~~e~~~ 139 (228)
T 3s6i_A 85 PTPEEIRDMDFEIMRAC-GFSARKIDSLKSIAEATI---------SGL---------------IPTKEEAERLSNEELIE 139 (228)
T ss_dssp CCHHHHHHSCHHHHHHH-TCCHHHHHHHHHHHHHHH---------HTS---------------SCCHHHHTTSCHHHHHH
T ss_pred CCHHHHHcCCHHHHHHc-CCCHHHHHHHHHHHHHHH---------cCC---------------CCChHHHhcCCHHHHHH
Confidence 58899999988888776 899888887776433211 111 11233333332 35
Q ss_pred HHhcCCCCCHHHHHHHHHH
Q psy11423 556 QLLNIPKIGSTTVKAFIKF 574 (655)
Q Consensus 556 eL~~i~GIG~~~A~~I~~~ 574 (655)
+|.+++|||+++|+.|.-|
T Consensus 140 ~L~~l~GIG~~TA~~ill~ 158 (228)
T 3s6i_A 140 RLTQIKGIGRWTVEMLLIF 158 (228)
T ss_dssp HHTTSTTCCHHHHHHHHHH
T ss_pred HHHhCCCcCHHHHHHHHHH
Confidence 6777888888888777765
No 114
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=88.01 E-value=1.1 Score=45.13 Aligned_cols=102 Identities=19% Similarity=0.300 Sum_probs=68.8
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccc---cCCcHHHHHHHHHHHHHhcccchhHHHHHh-CCCCccHH
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL---DRVSNKLANNILLAIQKSKLTTFSRFIYAL-GIRHVGET 534 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l---~GfG~Ksa~nll~~I~~sk~~~l~r~L~al-gIpgIG~~ 534 (655)
.+|=-||+|..+..|++.- .+++.+++-+.+.+..+ .++.+.. --.+.+ --|+.| .-.|||.+
T Consensus 356 lidehglspdaadeliehf--esiagilatdleeiermyeegrlseea---yraave--------iqlaeltkkegvgrk 422 (519)
T 2csb_A 356 LIDEHGLSPDAADELIEHF--ESIAGILATDLEEIERMYEEGRLSEEA---YRAAVE--------IQLAELTKKEGVGRK 422 (519)
T ss_dssp HHHHHCCCHHHHHHHHHHH--SSHHHHHTSCHHHHHHHHHHTSSCHHH---HHHHHH--------HHHHHHHTSTTCCHH
T ss_pred HHHhcCCCcchHHHHHHHH--HHHHHHHhccHHHHHHHHHcccccHHH---HHHHHH--------HHHHHHhhhcccchh
Confidence 4567799999999998863 57777776444433322 1122211 111111 112222 55799999
Q ss_pred HHHHHHHhCCCHHHHHhc----CHHHHhcCCCCCHHHHHHHHH
Q psy11423 535 TAKELANYFKNLECMFKA----TEEQLLNIPKIGSTTVKAFIK 573 (655)
Q Consensus 535 ~Ak~L~~~fgsl~~l~~a----s~eeL~~i~GIG~~~A~~I~~ 573 (655)
+|.+|+..||+.+.+++. ..+.|.++.|+|+.+..+++.
T Consensus 423 taerllrafgnpervkqlarefeieklasvegvgervlrslvp 465 (519)
T 2csb_A 423 TAERLLRAFGNPERVKQLAREFEIEKLASVEGVGERVLRSLVP 465 (519)
T ss_dssp HHHHHHHHHSSHHHHHHHHHTTCHHHHHTSTTCSHHHHHHHST
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhHHHHhhccchHHHHHHHhcc
Confidence 999999999999988875 468899999999998888764
No 115
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=87.53 E-value=1.6 Score=43.28 Aligned_cols=70 Identities=17% Similarity=0.080 Sum_probs=38.8
Q ss_pred HHHHHHcCCCCChHHHhcCChhhhccc---cCCcHHHHHHHHHHHHHhcc---cchhHHHHH-hCCCCccHHHHHHHHH
Q psy11423 470 IEKLVNANIVVTAVDLYKINFKNLLRL---DRVSNKLANNILLAIQKSKL---TTFSRFIYA-LGIRHVGETTAKELAN 541 (655)
Q Consensus 470 i~~L~~~g~I~~i~DL~~L~~~~L~~l---~GfG~Ksa~nll~~I~~sk~---~~l~r~L~a-lgIpgIG~~~Ak~L~~ 541 (655)
...|++.- .++.+|..++.++|..+ -||...+|.+|.+.-+.... ..+...... +.+||||+++|..++.
T Consensus 55 ~~~l~~~f--pt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~ 131 (226)
T 1orn_A 55 TKRLFEKY--RTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVS 131 (226)
T ss_dssp HHHHHHHC--CSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHC--CCHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHCCCccHHHHHHHHH
Confidence 34455442 58999999988875331 37877788877765543221 111111111 2566666666655543
No 116
>1xdn_A RNA editing ligase MP52; HET: MSE ATP; 1.20A {Trypanosoma brucei} SCOP: d.142.2.4
Probab=87.15 E-value=0.84 Score=46.55 Aligned_cols=201 Identities=17% Similarity=0.112 Sum_probs=105.8
Q ss_pred cccCCCCCCChHHHHHHHHHHHH-hhccCCCceEEEEEecceeEEEEEE-eCCEE--eEEEecCCCCccch---------
Q psy11423 88 KMMSLDNGFSDEDVIIFNKRITN-ELKLTKNIEYIAELKFDGIAVNLRY-EYGYL--KQASTRGDGNIGEN--------- 154 (655)
Q Consensus 88 pMlSL~k~~~~~el~~~~~~~~~-~l~~~~~~~~~~e~KiDGlsi~l~Y-~~G~l--~~a~TRGdG~~GeD--------- 154 (655)
...||+|-|.. |++++.. .+. ...|+++.||||.-.++++ ++|.. ++.+.| +|..+++
T Consensus 10 ~Y~sieNh~~~-----~i~~~~~~~l~---~~ewvatEKIHGaNFsii~~~d~~~~~i~~akR-s~~l~~~e~FfGy~~i 80 (277)
T 1xdn_A 10 PYIEIDLPSES-----RIQSLHKSGLA---AQEWVACEKVHGTNFGIYLINQGDHEVVRFAKR-SGIMDPNENFFGYHIL 80 (277)
T ss_dssp CCCCCCCCCHH-----HHHHHHHTTGG---GSCEEEEEECCSEEEEEEEEEETTEEEEEEEET-TEECCTTCCCTTGGGG
T ss_pred CcccccchHHH-----HHHHHHhcCCC---CCcEEEEEeeccccEEEEEecCCCeeEEEEeec-ccccCcccccccHHHH
Confidence 45688887754 4444432 222 3579999999999999998 46777 888898 5666533
Q ss_pred ---hhhhhhhcccCCcccccCCCCceEEEEEEEEeehhhHHHHHHHH---HHcCCCCCCChhhhHHhHhhhcCccccccc
Q psy11423 155 ---ITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYR---YHLGLKKFTNPRNAAAGILRQLNPKINKNK 228 (655)
Q Consensus 155 ---vT~n~~~i~~iP~~l~~~~~p~~~evRGEv~~~~~~F~~~n~~~---~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r 228 (655)
.+..++.+..+........-+..+.|-||++=..=.+-...+.+ ...|++ ..||-+ +-=|+..=..-..
T Consensus 81 ~~~l~~~~~~l~~~l~~~~~~~~~~~v~VyGELfGg~y~hp~v~~~~~~~~~~~~~--~~p~~~---~~IQ~~i~~~Y~p 155 (277)
T 1xdn_A 81 IDEFTAQIRILNDLLKQKYGLSRVGRLVLNGELFGAKYKHPLVPKSEKWCTLPNGK--KFPIAG---VQIQREPFPQYSP 155 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCSEEEEEEEEEEEECCCTTSCCCCCEEECTTSC--EEEGGG---CCSCCCSSCCCEE
T ss_pred HHHHHHHHHHHHHHHHHhhccCCccEEEEEEEEecCccCCccccccccccccCccc--cCcccc---cccccccccccCC
Confidence 22233333333221110001568999999993220000000000 000000 012211 1012222001122
Q ss_pred ceEEEEEecccccC-CC---CCCCHHHHHHHHHhC-CCCCCCCceeeCCHHHHHHHHHH-----HHHh---hc--CCCCc
Q psy11423 229 ILHFFAHGVGELRG-MN---MPSSHSELLNWYQKI-GLSICGEYSVLSGVNKLIEFYKK-----INIK---RF--NLPYE 293 (655)
Q Consensus 229 ~L~f~~y~~~~~~~-~~---~~~~~~e~l~~L~~~-GF~~~~~~~~~~~~~ev~~~~~~-----~~~~---r~--~l~y~ 293 (655)
.++|++|+|..... .+ .--+..+.++.+.+. ||.+.+. ....+++++++|--+ +.+. .. .-+.-
T Consensus 156 ~~~FYaFDI~~~~~~~~~~~~~L~fd~~~~~~~~~~gl~~ap~-L~rGt~~e~~~~~~~~f~s~ip~~~g~~~~~~~~Ni 234 (277)
T 1xdn_A 156 ELHFFAFDIKYSVSGAEEDFVLLGYDEFVEFSSKVPNLLYARA-LVRGTLDECLAFDVENFMTPLPALLGLGNYPLEGNL 234 (277)
T ss_dssp EEEEEEEEEEEESSCCGGGEEECCHHHHHHHHHTSTTCEECCC-SEEESHHHHHTCCGGGCBCSHHHHTTCTTSCCTTCB
T ss_pred CceEEEEEEEEecCCCccccccCCHHHHHHHHHHhcCCCeeee-eeecCHHHHhhcccccccccchhhcCCCccCCCCCe
Confidence 69999999964321 11 014667888888885 9998874 345577777774221 1111 10 12223
Q ss_pred cceEEEEECC
Q psy11423 294 IDGVVYKINC 303 (655)
Q Consensus 294 iDGiVikv~~ 303 (655)
--|+|||-..
T Consensus 235 aEGvViKp~~ 244 (277)
T 1xdn_A 235 AEGVVIRHVR 244 (277)
T ss_dssp CCEEEEEETT
T ss_pred eeeEEEeecc
Confidence 5799999875
No 117
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=87.05 E-value=0.65 Score=53.48 Aligned_cols=53 Identities=17% Similarity=0.277 Sum_probs=45.6
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHH
Q psy11423 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAI 511 (655)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I 511 (655)
..+.|||+|..++.+|+++| ++|+.||-.++.++|..++++|++..+.+...+
T Consensus 647 ~L~qlp~v~~~rar~L~~~G-~~s~~dl~~~~~~~l~~~~~~~~~i~~~~~~~~ 699 (720)
T 2zj8_A 647 PLMQLPLVGRRRARALYNSG-FRSIEDISQARPEELLKIEGIGVKTVEAIFKFL 699 (720)
T ss_dssp GGTTSTTCCHHHHHHHHTTT-CCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred hhhhCCCCCHHHHHHHHHcC-CCCHHHHHhCCHHHHHHhHhHHHHHHHHHHHhc
Confidence 35789999999999999888 599999999999999999999988776665443
No 118
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.81 E-value=0.7 Score=48.71 Aligned_cols=54 Identities=24% Similarity=0.202 Sum_probs=48.9
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHHH
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~ 513 (655)
.-.++|+|+.++++|-++|+ .++.++...+..+|..+.|+.+..+++++++..+
T Consensus 37 l~~l~Gi~~~~~~kL~~ag~-~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~~ 90 (349)
T 1pzn_A 37 IEDLPGVGPATAEKLREAGY-DTLEAIAVASPIELKEVAGISEGTALKIIQAARK 90 (349)
T ss_dssp SSCCTTCCHHHHHHHHTTTC-CSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHcCC-CcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHhh
Confidence 45679999999999999996 8999999999999999999999999999988754
No 119
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=86.33 E-value=0.54 Score=48.79 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=42.9
Q ss_pred CCCCccHHHHHHHHHhCCCHHHHHhcC-----HHH----HhcCC-C-----CCHHHHHHHHHHhcC
Q psy11423 527 GIRHVGETTAKELANYFKNLECMFKAT-----EEQ----LLNIP-K-----IGSTTVKAFIKFINQ 577 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~fgsl~~l~~as-----~ee----L~~i~-G-----IG~~~A~~I~~~f~~ 577 (655)
.||||+...|..|+++|+|+..|..|. .++ |..+. | ||+.+++.|+.+|..
T Consensus 241 ~IpGVs~~~A~~I~~~ypTp~~L~~Ay~~~~~~~e~~~lL~~i~~g~~~r~IG~~lS~kI~~~f~~ 306 (311)
T 2ziu_A 241 QISGVSGDKAAAVLEHYSTVSSLLQAYDKCSSETEKEKLLSSVKYGKLKRNLGPALSRTIYQLYCT 306 (311)
T ss_dssp TBTTCCHHHHHHHHHHCSSHHHHHHHHHHCSSHHHHTTTTTTCEETTTTEECHHHHHHHHHHHHHC
T ss_pred hccCCCHHHHHHHHHHCCCHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCcCHHHHHHHHHHhcc
Confidence 899999999999999999999988874 232 56663 3 999999999999864
No 120
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=85.92 E-value=0.7 Score=53.24 Aligned_cols=51 Identities=37% Similarity=0.578 Sum_probs=47.9
Q ss_pred hCCCCccHHHHHHHHHh-CCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHhc
Q psy11423 526 LGIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576 (655)
Q Consensus 526 lgIpgIG~~~Ak~L~~~-fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f~ 576 (655)
+.|||||..+|++|.+. +.|+..|..++.+++..++++|+++++++..++.
T Consensus 649 ~qlp~v~~~rar~L~~~G~~s~~dl~~~~~~~l~~~~~~~~~i~~~~~~~~~ 700 (720)
T 2zj8_A 649 MQLPLVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGVKTVEAIFKFLG 700 (720)
T ss_dssp TTSTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHC
T ss_pred hhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHhHhHHHHHHHHHHHhcc
Confidence 48999999999999976 8999999999999999999999999999998886
No 121
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=85.80 E-value=0.35 Score=47.95 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=41.9
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcH-HHHHHHHHH
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSN-KLANNILLA 510 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~-Ksa~nll~~ 510 (655)
..+|+|+|+++.++|.+.= .++..|...+.++|.++ +|+ +.|++|++.
T Consensus 170 LdgIpGIG~k~ak~Ll~~F--gSl~~i~~As~EeL~~V--IG~~~~A~~I~~~ 218 (220)
T 2nrt_A 170 LDNVPGIGPIRKKKLIEHF--GSLENIRSASLEEIARV--IGSTEIARRVLDI 218 (220)
T ss_dssp HTTSTTCCHHHHHHHHHHH--CSHHHHHTSCHHHHHHH--HTCHHHHHHHHHH
T ss_pred ccCCCCcCHHHHHHHHHHc--CCHHHHHhCCHHHHHHH--hChHHHHHHHHHH
Confidence 4579999999999999863 48889999999999999 999 999998764
No 122
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=83.39 E-value=0.73 Score=43.47 Aligned_cols=72 Identities=11% Similarity=0.113 Sum_probs=46.7
Q ss_pred HHHHHHHcCCCCChHHHhcCChhhhccc-c--CCcHHHHHHHHHHHHHhcccchhHHHHHhCCCCccHHHHHHHHHhCCC
Q psy11423 469 MIEKLVNANIVVTAVDLYKINFKNLLRL-D--RVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN 545 (655)
Q Consensus 469 ~i~~L~~~g~I~~i~DL~~L~~~~L~~l-~--GfG~Ksa~nll~~I~~sk~~~l~r~L~algIpgIG~~~Ak~L~~~fgs 545 (655)
...+|++.. .|+.+|..++.++|.++ . ||-...|.+|.+.-+
T Consensus 52 ~~~~l~~~~--pt~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a~--------------------------------- 96 (161)
T 4e9f_A 52 VLWKFLEKY--PSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSD--------------------------------- 96 (161)
T ss_dssp HHHHHHHHS--CSHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHC--CCHHHHhccChHhHHhHhhhcCCHHHHHHHHHHHhC---------------------------------
Confidence 445566654 58888888887766443 2 444566666654211
Q ss_pred HHHHHhcCHHHHhcCCCCCHHHHHHHHHHhcC
Q psy11423 546 LECMFKATEEQLLNIPKIGSTTVKAFIKFINQ 577 (655)
Q Consensus 546 l~~l~~as~eeL~~i~GIG~~~A~~I~~~f~~ 577 (655)
.+...+.++|.++||||+.+|.++..|+-+
T Consensus 97 --~~vp~~~~~L~~LpGVG~yTAdav~~F~~~ 126 (161)
T 4e9f_A 97 --EYLTKQWKYPIELHGIGKYGNDSYRIFCVN 126 (161)
T ss_dssp --HHHHSCCSSGGGSTTCCHHHHHHHHHHTSS
T ss_pred --CcCCCChhhhhcCCCchHHHHHHHHHHHCC
Confidence 111224568889999999999999888654
No 123
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=83.33 E-value=2.3 Score=35.63 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=47.3
Q ss_pred ccc-CCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHHH
Q psy11423 460 MNI-IGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (655)
Q Consensus 460 l~I-~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~ 513 (655)
.+. |||.+..++.|-.++ |.|+.|++.++..+|.++=|.+-+.+..|.+.+.+
T Consensus 6 ~~~~p~Lse~~~~~L~~~~-I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~~ 59 (83)
T 2kz3_A 6 VGLCPGLTEEMIQLLRSHR-IKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLA 59 (83)
T ss_dssp TTSSTTCCHHHHHHHHHTT-CCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHCC-CCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 566 999999999998877 69999999999999999999999999888887754
No 124
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=83.21 E-value=3 Score=41.18 Aligned_cols=39 Identities=26% Similarity=0.216 Sum_probs=24.6
Q ss_pred HHHHHcCCCCChHHHhcCChhhhccc---cCCcHHHHHHHHHHHH
Q psy11423 471 EKLVNANIVVTAVDLYKINFKNLLRL---DRVSNKLANNILLAIQ 512 (655)
Q Consensus 471 ~~L~~~g~I~~i~DL~~L~~~~L~~l---~GfG~Ksa~nll~~I~ 512 (655)
..|++.- .++.+|..++.++|..+ =||. .+|.+|.+..+
T Consensus 53 ~~l~~~~--pt~~~la~~~~~~l~~~i~~~G~~-~kA~~l~~~a~ 94 (225)
T 1kg2_A 53 ERFMARF--PTVTDLANAPLDEVLHLWTGLGYY-ARARNLHKAAQ 94 (225)
T ss_dssp HHHHHHC--SSHHHHHHSCHHHHHHHHTTSCCT-HHHHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHCCCHHHHHHHHHhCChH-HHHHHHHHHHH
Confidence 3454432 58899998888887642 2666 45777665443
No 125
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=83.06 E-value=0.61 Score=48.21 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=31.3
Q ss_pred CCCCccHHHHHHHHHhCCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHH
Q psy11423 527 GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKF 574 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~ 574 (655)
||||||+++|.+|++.|||++++... +.++. .+++.+++.++
T Consensus 207 GVpGIG~KTA~kLL~~~gsle~i~~~----~~~~~--~~~~~~~L~~~ 248 (290)
T 1exn_A 207 GVEGIGAKRGYNIIREFGNVLDIIDQ----LPLPG--KQKYIQNLNAS 248 (290)
T ss_dssp CCTTCCHHHHHHHHHHHCSHHHHHHH----CSCSC--CCHHHHHHHTC
T ss_pred CCCcCCHhHHHHHHHHcCCHHHHHHH----HHHhc--cHHHHHHHHHh
Confidence 89999999999999999999988753 22330 33666666654
No 126
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=82.83 E-value=1.5 Score=42.89 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=21.9
Q ss_pred CChHHHhcCChhhhccc---cCCcHHHHHHHHHHHH
Q psy11423 480 VTAVDLYKINFKNLLRL---DRVSNKLANNILLAIQ 512 (655)
Q Consensus 480 ~~i~DL~~L~~~~L~~l---~GfG~Ksa~nll~~I~ 512 (655)
.++.+|..++.++|..+ -||...+|.+|.+.-+
T Consensus 59 pt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~ 94 (211)
T 2abk_A 59 NTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCR 94 (211)
T ss_dssp CSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHH
T ss_pred CCHHHHHCCCHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 57888888877776442 2676667777766543
No 127
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=82.66 E-value=2.8 Score=35.86 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=25.3
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHhcC
Q psy11423 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYKI 488 (655)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L 488 (655)
+.-++|+||+++.+.|.+.| |.|++||-.+
T Consensus 5 ~L~~LPNiG~~~e~~L~~vG-I~s~e~L~~~ 34 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDLIKAG-IKTPVELKDV 34 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTT-CCSHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHHcC-CCCHHHHHhC
Confidence 35689999999999999988 6898888753
No 128
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=81.79 E-value=3.5 Score=42.44 Aligned_cols=38 Identities=11% Similarity=-0.003 Sum_probs=23.0
Q ss_pred HHHHHcCCCCChHHHhcCChhhhccc---cCCcHHHHHHHHHHH
Q psy11423 471 EKLVNANIVVTAVDLYKINFKNLLRL---DRVSNKLANNILLAI 511 (655)
Q Consensus 471 ~~L~~~g~I~~i~DL~~L~~~~L~~l---~GfG~Ksa~nll~~I 511 (655)
..|++.- .++.+|..++.++|..+ =||.. +|.+|.+.-
T Consensus 72 ~rL~~~f--ptpe~La~a~~eel~~~ir~lG~~~-KA~~L~~~A 112 (287)
T 3n5n_X 72 TGWMQKW--PTLQDLASASLEEVNQLWAGLGYYS-RGRRLQEGA 112 (287)
T ss_dssp HHHHHHC--CSHHHHHTSCHHHHHHHHTTSSCHH-HHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHcCCHHHHHHHHHHcCCHH-HHHHHHHHH
Confidence 3455442 58888888887776432 26654 576666543
No 129
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=81.57 E-value=1.7 Score=46.87 Aligned_cols=54 Identities=20% Similarity=0.283 Sum_probs=48.2
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHHH
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~ 513 (655)
.|.=-||+++++++|-++|+ .++.|+...+..+|..+.|+.+..+++|++++.+
T Consensus 85 ~l~~~gi~~~~~~~L~~ag~-~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a~~ 138 (400)
T 3lda_A 85 KLQVNGITMADVKKLRESGL-HTAEAVAYAPRKDLLEIKGISEAKADKLLNEAAR 138 (400)
T ss_dssp GGCCTTCCHHHHHHHHHTTC-CBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHcCC-CcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34445799999999999996 8999999999999999999999999999988764
No 130
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=80.70 E-value=2.8 Score=43.68 Aligned_cols=64 Identities=14% Similarity=0.168 Sum_probs=51.5
Q ss_pred HhhccccccccccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHHH
Q psy11423 448 KAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (655)
Q Consensus 448 ~~~i~~F~sk~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~ 513 (655)
.+++-..-+ ..+.+||+|+..+++|.++| ++++.||..++.+++..+-|++++..+.+.+.++.
T Consensus 149 ~q~~w~~~~-pL~Qlp~i~~~~~~~l~~~~-i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~ 212 (328)
T 3im1_A 149 IQGVWDVDN-PLRQIPHFNNKILEKCKEIN-VETVYDIMALEDEERDEILTLTDSQLAQVAAFVNN 212 (328)
T ss_dssp HHTSCTTSC-GGGGSTTCCHHHHHHHHHTT-CCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HhhcCCCCC-ceeCCCCCCHHHHHHHHhCC-CCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHh
Confidence 344444443 57899999999999999877 69999999999988888778888888888777654
No 131
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=80.14 E-value=1.3 Score=37.48 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=38.6
Q ss_pred CCCCeEecccc-cCccEEEecCCCCchHHHHHHcCCeeeCHHHHHHHHh
Q psy11423 600 TKGGKVVNFIS-KNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647 (655)
Q Consensus 600 ~~G~~v~~sVs-k~t~ylv~g~~~g~K~~kA~~lgi~ii~e~~f~~~l~ 647 (655)
.+||++....+ .+++++|++...+.|.+.|+ +++|++++-+.+-++
T Consensus 37 ~~GG~~~~~~~~~~~THlI~~~~~~~k~~~~~--~~~iV~p~Wl~dci~ 83 (97)
T 2ebw_A 37 LHGGQYHVYYSRSKTTHIIATNLPNAKIKELK--GEKVIRPEWIVESIK 83 (97)
T ss_dssp HTTCEECSSCCSSSCCEEECSCCCTTHHHHTS--SSCCBCTHHHHHHHH
T ss_pred HcCCEEeeecCCCCCEEEEecCCChHHHHHhc--CCCEeChHHHHHHHH
Confidence 78898877665 57889999988788888776 999999999988774
No 132
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=79.14 E-value=2 Score=41.85 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.1
Q ss_pred HHHHhcCCCCCHHHHHHHHHH
Q psy11423 554 EEQLLNIPKIGSTTVKAFIKF 574 (655)
Q Consensus 554 ~eeL~~i~GIG~~~A~~I~~~ 574 (655)
.++|.++||||+++|+.|..|
T Consensus 116 ~~~L~~lpGIG~kTA~~il~~ 136 (207)
T 3fhg_A 116 RERLLNIKGIGMQEASHFLRN 136 (207)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHcCCCcCHHHHHHHHHH
Confidence 478999999999999999887
No 133
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=78.75 E-value=1.4 Score=50.58 Aligned_cols=50 Identities=24% Similarity=0.350 Sum_probs=43.0
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHH
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQ 512 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~ 512 (655)
.+.|||+|+.++.+|+++|+ +++.||- ++.++|..+ +|+|.++++++++.
T Consensus 659 L~qlp~i~~~rar~L~~~g~-~s~~~l~-~~~~~l~~~--l~~~~~~~i~~~~~ 708 (715)
T 2va8_A 659 LVQISGVGRKRARLLYNNGI-KELGDVV-MNPDKVKNL--LGQKLGEKVVQEAA 708 (715)
T ss_dssp HHTSTTCCHHHHHHHHHTTC-CSHHHHH-HCHHHHHHH--HCHHHHHHHHHHHH
T ss_pred hhhCCCCCHHHHHHHHHcCC-CCHHHHh-CCHHHHHHH--hChhHHHHHHHHHH
Confidence 46899999999999999986 9999999 998888888 45788888887664
No 134
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=78.67 E-value=1.1 Score=34.03 Aligned_cols=25 Identities=16% Similarity=0.440 Sum_probs=20.0
Q ss_pred CCCCCCCCCCcceeecCceeEEecC
Q psy11423 414 IPNICPICNSKIIYIESNLIARCSG 438 (655)
Q Consensus 414 ~P~~CP~C~~~l~~~~~~~~~~C~n 438 (655)
.-.+||.||+.+........++|..
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~k 42 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGK 42 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSS
T ss_pred ecccCCCCCCceEEecCCCeEECCC
Confidence 3468999999888777777889965
No 135
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=78.15 E-value=2.1 Score=41.71 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=23.1
Q ss_pred cCChhhhccccCCcHHHHHHHHHHHHH
Q psy11423 487 KINFKNLLRLDRVSNKLANNILLAIQK 513 (655)
Q Consensus 487 ~L~~~~L~~l~GfG~Ksa~nll~~I~~ 513 (655)
+++.++|..|||+|+++|+.|++.-++
T Consensus 128 TA~~~eL~~LpGIG~k~A~~IIeyRe~ 154 (205)
T 2i5h_A 128 TTRMHQLELLPGVGKKMMWAIIEERKK 154 (205)
T ss_dssp CSSSBGGGGSTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHhcCCCcCHHHHHHHHHHHhc
Confidence 677889999999999999999986554
No 136
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=78.09 E-value=3 Score=42.90 Aligned_cols=61 Identities=18% Similarity=0.085 Sum_probs=36.6
Q ss_pred CChHHHhcCChhhhccccCCcHHHHHHHHHHHHH-----hcccchhHHHHHh-CCCCccHHHHHHHHH
Q psy11423 480 VTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK-----SKLTTFSRFIYAL-GIRHVGETTAKELAN 541 (655)
Q Consensus 480 ~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~-----sk~~~l~r~L~al-gIpgIG~~~Ak~L~~ 541 (655)
-++++|..++.++|..+ ||+..+|+.|.+.-+. ....+.......| .|||||+++|.-++.
T Consensus 162 Ptp~~la~~~~~~Lr~~-G~~~rKa~~i~~~A~~g~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill 228 (295)
T 2jhn_A 162 PTQEAILKAGVEGLREC-GLSRRKAELIVEIAKEENLEELKEWGEEEAYEYLTSFKGIGRWTAELVLS 228 (295)
T ss_dssp CCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHTCSSGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHH
T ss_pred CCHHHHHcCCHHHHHHc-CCCHHHHHHHHHHHHCCCHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHH
Confidence 57888888887888776 8998888888765433 0011111122222 566666666655443
No 137
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=77.81 E-value=1.2 Score=51.00 Aligned_cols=51 Identities=20% Similarity=0.252 Sum_probs=40.4
Q ss_pred HHHHhCCCCccHHHHHHHHHh-CCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHh
Q psy11423 522 FIYALGIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575 (655)
Q Consensus 522 ~L~algIpgIG~~~Ak~L~~~-fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f 575 (655)
.+.-+.|||||..+|++|.+. |.++..|. ++++++.++- |++++++|++..
T Consensus 656 ~~~L~qlp~i~~~rar~L~~~g~~s~~~l~-~~~~~l~~~l--~~~~~~~i~~~~ 707 (715)
T 2va8_A 656 LLELVQISGVGRKRARLLYNNGIKELGDVV-MNPDKVKNLL--GQKLGEKVVQEA 707 (715)
T ss_dssp GHHHHTSTTCCHHHHHHHHHTTCCSHHHHH-HCHHHHHHHH--CHHHHHHHHHHH
T ss_pred hcchhhCCCCCHHHHHHHHHcCCCCHHHHh-CCHHHHHHHh--ChhHHHHHHHHH
Confidence 333459999999999998865 78999999 9999999883 366777766644
No 138
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=77.27 E-value=2.9 Score=41.29 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=35.5
Q ss_pred hHHHHHhCCCCccHHHHHHH---HHhCCCHHHHHhcC----HHHHh-cCCCCCHHHHHHHHHHhcC
Q psy11423 520 SRFIYALGIRHVGETTAKEL---ANYFKNLECMFKAT----EEQLL-NIPKIGSTTVKAFIKFINQ 577 (655)
Q Consensus 520 ~r~L~algIpgIG~~~Ak~L---~~~fgsl~~l~~as----~eeL~-~i~GIG~~~A~~I~~~f~~ 577 (655)
...|...|.+ .....|+.| ++.++++..+...+ .++|. +++|||+++|..+.-|+..
T Consensus 88 ~~~Ir~~G~R-f~~~KA~~I~~~a~~ig~l~~~~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~~g~ 152 (219)
T 3n0u_A 88 AEKLREVGHR-YPQKRAEFIVENRKLLGKLKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRNTGV 152 (219)
T ss_dssp HHHHHHTTCS-SHHHHHHHHHHHGGGTTTHHHHHHSCHHHHHHHHHHHSTTCCHHHHHHHHHTTTC
T ss_pred HHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 3445555521 224455443 34455555555443 36799 9999999999999876543
No 139
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=77.10 E-value=2 Score=41.89 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=21.8
Q ss_pred CCCCccHHHHHHHHHh-----CCCHHHHHhcCHHHHhc-CCCCCHH---HHHHHHHHh
Q psy11423 527 GIRHVGETTAKELANY-----FKNLECMFKATEEQLLN-IPKIGST---TVKAFIKFI 575 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~-----fgsl~~l~~as~eeL~~-i~GIG~~---~A~~I~~~f 575 (655)
.+||||+++|++|.+. |. |.++|.+ +.|||.. +.+++.+-+
T Consensus 136 ~LpGIG~k~A~~IIeyRe~G~F~--------s~eDL~~RV~GIg~~~~~Ig~r~le~l 185 (205)
T 2i5h_A 136 LLPGVGKKMMWAIIEERKKRPFE--------SFEDIAQRVKGIQRPEKLIVSRIIYEI 185 (205)
T ss_dssp GSTTCCHHHHHHHHHHHHHSCCC--------SHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHHHhcCCCC--------CHHHHHHhcCCCCcchhHHHHHHHHHh
Confidence 3667777776666542 33 3455544 6665444 444444444
No 140
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=77.03 E-value=2 Score=45.17 Aligned_cols=49 Identities=22% Similarity=0.218 Sum_probs=41.3
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHH
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLA 510 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~ 510 (655)
.-++.|+|+++.++|-..| |.++.||..+....|... ||.+....|++.
T Consensus 180 v~~l~GiG~~~~~~L~~~G-I~Ti~dL~~~~~~~L~~~--fG~~~g~~l~~~ 228 (356)
T 4dez_A 180 PDALWGVGPKTTKKLAAMG-ITTVADLAVTDPSVLTTA--FGPSTGLWLLLL 228 (356)
T ss_dssp GGGSTTCCHHHHHHHHHTT-CCSHHHHHTSCHHHHHHH--HCHHHHHHHHHH
T ss_pred HHHHcCCchhHHHHHHHcC-CCeecccccCCHHHHHHH--hCChHHHHHHHH
Confidence 4579999999999998776 699999999999999886 998877666543
No 141
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=77.01 E-value=1.2 Score=46.91 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=22.7
Q ss_pred CCCCccHHHHHHHHHhCCCHHHHHhc
Q psy11423 527 GIRHVGETTAKELANYFKNLECMFKA 552 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~fgsl~~l~~a 552 (655)
||||||+++|-+|++.|+|++.+...
T Consensus 236 gipGiG~KtA~kll~~~gsle~i~~~ 261 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQKHKSIEEIVRR 261 (341)
T ss_dssp CCTTCCHHHHHHHHHHHCSHHHHHHH
T ss_pred CCCCccHHHHHHHHHHcCCHHHHHHH
Confidence 78999999999999999999887653
No 142
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=76.91 E-value=5.1 Score=42.36 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=42.9
Q ss_pred HHHHHcCCCCChHHHhcCChhhhccc---cCCcHHHHHHHHHHHHHhcc---cchhHHHHH-hCCCCccHHHHHHHHHh-
Q psy11423 471 EKLVNANIVVTAVDLYKINFKNLLRL---DRVSNKLANNILLAIQKSKL---TTFSRFIYA-LGIRHVGETTAKELANY- 542 (655)
Q Consensus 471 ~~L~~~g~I~~i~DL~~L~~~~L~~l---~GfG~Ksa~nll~~I~~sk~---~~l~r~L~a-lgIpgIG~~~Ak~L~~~- 542 (655)
..|++.- -++.+|..++.++|..+ =||.. +|.+|.+.-+.... ..+...... +.+||||+++|..++..
T Consensus 62 ~~l~~~~--pt~~~la~a~~~~l~~~i~~~G~~~-ra~~l~~~a~~~~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~ 138 (369)
T 3fsp_A 62 EQFIDRF--PTLEALADADEDEVLKAWEGLGYYS-RVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLA 138 (369)
T ss_dssp HHHHHHC--CSHHHHHTSCHHHHHHTTTTSSCTH-HHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHCCCHHHHHHHHHhcChHH-HHHHHHHHHHHHHHHcCCCChhHHHHHhcCCCcCHHHHHHHHHHH
Confidence 3455542 58999999998887542 26766 68887765543221 111122222 27889998888876653
Q ss_pred CC
Q psy11423 543 FK 544 (655)
Q Consensus 543 fg 544 (655)
|+
T Consensus 139 ~~ 140 (369)
T 3fsp_A 139 YG 140 (369)
T ss_dssp HC
T ss_pred CC
Confidence 44
No 143
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=76.43 E-value=4.6 Score=39.25 Aligned_cols=48 Identities=13% Similarity=0.029 Sum_probs=41.6
Q ss_pred CCCCeEecccccCccEEEecCC------CCchHHHHHHcCCeeeCHHHHHHHHh
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQK------PGKKLEKAIKLNIKILDEKNFVKIVK 647 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~------~g~K~~kA~~lgi~ii~e~~f~~~l~ 647 (655)
.+|+.+...++.+++.||++.. .+.|...|...|++|++.+-+.+-+.
T Consensus 29 ~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~~~~ 82 (229)
T 1l0b_A 29 KYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIKSIQ 82 (229)
T ss_dssp HTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHHHHT
T ss_pred HcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHHHHHHHHH
Confidence 6789999999999999999985 24788889999999999999888764
No 144
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=76.43 E-value=3.9 Score=37.86 Aligned_cols=90 Identities=14% Similarity=0.206 Sum_probs=65.9
Q ss_pred HHHHHHHHcCCCCChHHHhcCChhhhccccCCc-HHHHHHHHHHHHHhcc---------cchhHHHHHhCCCCccHHHHH
Q psy11423 468 KMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS-NKLANNILLAIQKSKL---------TTFSRFIYALGIRHVGETTAK 537 (655)
Q Consensus 468 k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG-~Ksa~nll~~I~~sk~---------~~l~r~L~algIpgIG~~~Ak 537 (655)
.-...+.++|+ . ...|..|+.+||..| |+. .---.+|+.+|+.-+. .++..||.++|++. -.-.
T Consensus 24 ~Y~~~F~~~g~-d-~~~l~~lt~~DL~~l-GIt~~gHrkkil~ai~~L~~~~~~~~~~p~~v~~WL~~igL~q---Y~~~ 97 (149)
T 3sei_A 24 LYAPNFISAGY-D-LPTISRMTPEDLTAI-GVTKPGHRKKIAAEISGLSIPDWLPEHKPANLAVWLSMIGLAQ---YYKV 97 (149)
T ss_dssp GGHHHHHHTTC-C-HHHHTTCCHHHHHHT-TCCSHHHHHHHHHHHHTCCCCCCSCSSCCSCHHHHHHHTTCGG---GHHH
T ss_pred HHHHHHHHcCC-C-HHHHccCCHHHHHHc-CCCCHHHHHHHHHHHHHHHhccccCCCCcccHHHHHHHcCchh---hHHH
Confidence 45556777775 4 777778999999988 554 3466789999987543 24778999998763 3334
Q ss_pred HHHHhCCCHHHHHhcCHHHHhcCCCCC
Q psy11423 538 ELANYFKNLECMFKATEEQLLNIPKIG 564 (655)
Q Consensus 538 ~L~~~fgsl~~l~~as~eeL~~i~GIG 564 (655)
-....|.+++.+...+.++|..+ ||.
T Consensus 98 F~~~g~d~~~~l~~lt~~dL~~l-GI~ 123 (149)
T 3sei_A 98 LVDNGYENIDFITDITWEDLQEI-GIT 123 (149)
T ss_dssp HHHTTCCSHHHHTTCCHHHHHHH-TCC
T ss_pred HHHCCCchHHHHhhCCHHHHHHC-CCC
Confidence 44556888999999999999765 665
No 145
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=75.25 E-value=1.6 Score=50.08 Aligned_cols=50 Identities=22% Similarity=0.358 Sum_probs=43.2
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHH
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQ 512 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~ 512 (655)
.+.|||+|+.++.+|+++| ++++.||..+. ++|..+ +|++.++++++.+.
T Consensus 634 L~qlp~v~~~~ar~l~~~g-~~s~~~l~~~~-~~l~~l--l~~~~~~~i~~~~~ 683 (702)
T 2p6r_A 634 LVRIRHIGRVRARKLYNAG-IRNAEDIVRHR-EKVASL--IGRGIAERVVEGIS 683 (702)
T ss_dssp HHTSTTCCHHHHHHHHTTT-CCSHHHHHHTH-HHHHHH--HCHHHHHHHHHHHH
T ss_pred hhcCCCCCHHHHHHHHHcC-CCCHHHHHhhh-HHHHHH--hChhHHHHHHHhcC
Confidence 5689999999999999988 69999999988 888876 45888888888776
No 146
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=75.25 E-value=3 Score=43.41 Aligned_cols=51 Identities=12% Similarity=0.189 Sum_probs=44.6
Q ss_pred hCCCCccHHHHHHHHHh-CCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHhc
Q psy11423 526 LGIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576 (655)
Q Consensus 526 lgIpgIG~~~Ak~L~~~-fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f~ 576 (655)
+.+||||+..+++|.++ +.++..|..++.+++..+-|+++..++.+.++++
T Consensus 160 ~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~ 211 (328)
T 3im1_A 160 RQIPHFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVN 211 (328)
T ss_dssp GGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHH
Confidence 47899999999998764 6799999999999999988999988888888765
No 147
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=75.08 E-value=4.3 Score=39.95 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.3
Q ss_pred HHHHh-cCCCCCHHHHHHHHHHh
Q psy11423 554 EEQLL-NIPKIGSTTVKAFIKFI 575 (655)
Q Consensus 554 ~eeL~-~i~GIG~~~A~~I~~~f 575 (655)
.++|. ++||||+++|..|..|.
T Consensus 123 re~Ll~~LpGVG~KTA~~vL~~~ 145 (214)
T 3fhf_A 123 REFLVRNIKGIGYKEASHFLRNV 145 (214)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHc
Confidence 46799 99999999999998764
No 148
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=74.26 E-value=4.5 Score=38.71 Aligned_cols=48 Identities=15% Similarity=0.036 Sum_probs=41.3
Q ss_pred CCCCeEecccccCccEEEecCCC------CchHHHHHHcCCeeeCHHHHHHHHh
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQKP------GKKLEKAIKLNIKILDEKNFVKIVK 647 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~~------g~K~~kA~~lgi~ii~e~~f~~~l~ 647 (655)
.+|+.+.+.++.+++.||++... +.|...|...|++|++.+-+.+-+.
T Consensus 26 ~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~~~~~ 79 (214)
T 1t15_A 26 KHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIK 79 (214)
T ss_dssp HHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHH
T ss_pred HhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCHHHHHHHHH
Confidence 56899999999999999999863 3687788889999999999888764
No 149
>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4}
Probab=73.97 E-value=1.4 Score=47.13 Aligned_cols=165 Identities=12% Similarity=0.035 Sum_probs=91.6
Q ss_pred eeccccccCCCCCCChHHHHHHHHHHHHhhccCCCceEEEEEecceeEEEEEEeCCEEeEEEecCCCCccchhhhhhhh-
Q psy11423 83 VHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHI- 161 (655)
Q Consensus 83 v~H~~pMlSL~k~~~~~el~~~~~~~~~~l~~~~~~~~~~e~KiDGlsi~l~Y~~G~l~~a~TRGdG~~GeDvT~n~~~- 161 (655)
.+|.+..-+++|.||.+|...+.. +. + ...+.++.|+||.-+...+.+|++ .+.||| |.. .+=+.-++.
T Consensus 65 ~~~~Iv~R~~~KFFN~~E~~~t~~-l~--~----~~pv~V~eK~DGslv~~~~~~G~l-~~~SKg-s~~-~~~a~~~~~~ 134 (375)
T 2c5u_A 65 KPVRIASRPMEKFFNLNENPFTMN-ID--L----NDVDYILTKEDGSLVSTYLDGDEI-LFKSKG-SIK-SEQALMANGI 134 (375)
T ss_dssp EEEEEEECCCCCCCBTTSSGGGSS-CC--G----GGEEEEEEECCSEEEEEEEETTEE-EEEETT-BSS-SHHHHHHHHH
T ss_pred CcceEEEcCCCCCccCCCcccccc-cc--c----CCCEEEEEecCCeEEEEEEECCEE-EEEeCC-CCC-ChHHHHHHHH
Confidence 346778888999999998664321 11 1 247999999999999888899986 789998 322 221222222
Q ss_pred ccc-CCcc----cccCCCCceEEEEEEEEeehhhHHHHHHHHHHcCCCCCCChhhhHHhHhhhcCcccccccceEEEEEe
Q psy11423 162 IHK-IPLV----LNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHG 236 (655)
Q Consensus 162 i~~-iP~~----l~~~~~p~~~evRGEv~~~~~~F~~~n~~~~~~g~~~f~NpRN~aaG~lr~~d~~~~~~r~L~f~~y~ 236 (655)
+.. .-.. +.. -....+.+-||+.=+.+ | -+..-....|+.++
T Consensus 135 l~~~~~~~l~~~~~~-l~~~~~t~~fE~~~pen--------------------~------------hVl~Y~~~~L~L~~ 181 (375)
T 2c5u_A 135 LMNINHHRLRDRLKE-LAEDGFTANFEFVAPTN--------------------R------------IVLAYQEMKIILLN 181 (375)
T ss_dssp HHSGGGHHHHHHHHH-HHHTTEEEEEEEECTTS--------------------C------------SSSCCSSCEEEEEE
T ss_pred HhhhcchHHHHHHHH-hcCCCCEEEEEEcCCCC--------------------c------------eeccCCCCCEEEEE
Confidence 110 0000 000 01123667777764321 1 11110124577777
Q ss_pred cccccCCCCCCCHHHHHHHHHhCCCCCCCCceeeCCHHHHHHHHHHHHHhhcCCCCccceEEEEEC
Q psy11423 237 VGELRGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKIN 302 (655)
Q Consensus 237 ~~~~~~~~~~~~~~e~l~~L~~~GF~~~~~~~~~~~~~ev~~~~~~~~~~r~~l~y~iDGiVikv~ 302 (655)
+.......+ -++.+..++.. |||++++... .+ +.++.+...+ .-.+-|+|++..
T Consensus 182 i~~n~tg~~-l~~~e~~~~a~-~g~~~V~~~~-~~----l~ell~~~~~-----~~~~EGfVir~~ 235 (375)
T 2c5u_A 182 VRENETGEY-ISYDDIYKDAT-LRPYLVERYE-ID----SPKWIEEAKN-----AENIEGYVAVMK 235 (375)
T ss_dssp EEETTTCCB-CCHHHHHHCTT-TGGGBCCEEE-CS----STHHHHHHHH-----CSSCCEEEEEET
T ss_pred EEEcCCCcE-ecHHHHHHHHh-hCCCcCceee-cc----HHHHHHHHhh-----CCCCceEEEEec
Confidence 654321122 46667666666 9999887543 22 3344443322 345688888865
No 150
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=73.96 E-value=6.5 Score=37.82 Aligned_cols=48 Identities=13% Similarity=-0.073 Sum_probs=41.4
Q ss_pred CCCCeEecccccCccEEEecCC---CCchHHHHHHcCCeeeCHHHHHHHHh
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQK---PGKKLEKAIKLNIKILDEKNFVKIVK 647 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~---~g~K~~kA~~lgi~ii~e~~f~~~l~ 647 (655)
.+||.+...++.+++.||++.. .+.|...|...|++|++.+-+.+-+.
T Consensus 24 ~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~ 74 (210)
T 2nte_A 24 ILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLR 74 (210)
T ss_dssp HTTCEEESSCCTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHHH
T ss_pred HcCCEEeCCCCCCCeEEEEcCCCcchHHHHHHHHhcCCEEecHHHHHHHHH
Confidence 7889999999999999999873 34788889999999999999888664
No 151
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=73.93 E-value=1.6 Score=45.86 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.5
Q ss_pred CCCCccHHHHHHHHHhCCCHHHHHhc
Q psy11423 527 GIRHVGETTAKELANYFKNLECMFKA 552 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~fgsl~~l~~a 552 (655)
||||||+++|-+|++.|||++.+...
T Consensus 239 Gv~GiG~KtA~kLl~~~gsle~i~~~ 264 (336)
T 1rxw_A 239 GVKGVGVKKALNYIKTYGDIFRALKA 264 (336)
T ss_dssp CCTTCCHHHHHHHHHHHSSHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHcCCHHHHHHh
Confidence 89999999999999999999988764
No 152
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=73.51 E-value=5.2 Score=42.39 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=18.0
Q ss_pred HHHHhcCCCCCHHHHHHHHHH
Q psy11423 554 EEQLLNIPKIGSTTVKAFIKF 574 (655)
Q Consensus 554 ~eeL~~i~GIG~~~A~~I~~~ 574 (655)
.++|.+++|||+++|+.|.-|
T Consensus 252 ~~~L~~LpGIGp~TA~~ill~ 272 (360)
T 2xhi_A 252 HKALCILPGVGTCVADKICLM 272 (360)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHH
Confidence 467999999999999998876
No 153
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=73.21 E-value=5.6 Score=40.50 Aligned_cols=65 Identities=17% Similarity=0.093 Sum_probs=38.5
Q ss_pred CChHHHhcCChhhhccccCCcHHHHHHHHHHHHHhccc--------chhHHHHHh-CCCCccHHHHHHHHH-hCCC
Q psy11423 480 VTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLT--------TFSRFIYAL-GIRHVGETTAKELAN-YFKN 545 (655)
Q Consensus 480 ~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~sk~~--------~l~r~L~al-gIpgIG~~~Ak~L~~-~fgs 545 (655)
-++++|..++.++|..+ ||...++..|.+.-+...+. +.......| .|||||+++|.-++. .|+.
T Consensus 156 Ptp~~la~~~~~~Lr~~-G~~~~ra~~i~~~A~~~~~~~~~~~~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~ 230 (282)
T 1mpg_A 156 PTPQRLAAADPQALKAL-GMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALRGWQA 230 (282)
T ss_dssp CCHHHHHTCCHHHHHHT-TSCHHHHHHHHHHHHHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHHHSCC
T ss_pred CCHHHHHcCCHHHHHHc-CCCHHHHHHHHHHHHHHHcCCCCccccCCHHHHHHHHhcCCCcCHHHHHHHHHHhCCC
Confidence 48899999998999777 78667777776654432211 111223333 566666666655443 3443
No 154
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=72.74 E-value=6.7 Score=33.50 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=26.0
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHhcCC
Q psy11423 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYKIN 489 (655)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~ 489 (655)
+.-++|+||+++.+.|.+.| |.|++||..+.
T Consensus 5 ~L~dLPNig~~~e~~L~~~G-I~t~~~Lr~~G 35 (93)
T 3mab_A 5 NLSELPNIGKVLEQDLIKAG-IKTPVELKDVG 35 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTT-CCSHHHHHHHC
T ss_pred HHhhCCCCCHHHHHHHHHcC-CCCHHHHHhCC
Confidence 35689999999999999998 68998887643
No 155
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=71.50 E-value=4.9 Score=37.72 Aligned_cols=15 Identities=7% Similarity=0.138 Sum_probs=9.8
Q ss_pred CCCCccHHHHHHHHH
Q psy11423 527 GIRHVGETTAKELAN 541 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~ 541 (655)
.+||||+.+|..++.
T Consensus 108 ~LpGVG~yTAdav~~ 122 (161)
T 4e9f_A 108 ELHGIGKYGNDSYRI 122 (161)
T ss_dssp GSTTCCHHHHHHHHH
T ss_pred cCCCchHHHHHHHHH
Confidence 567777777766554
No 156
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=70.95 E-value=3 Score=45.11 Aligned_cols=47 Identities=23% Similarity=0.202 Sum_probs=39.2
Q ss_pred cccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHH
Q psy11423 460 MNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILL 509 (655)
Q Consensus 460 l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~ 509 (655)
-++.|+|+++.++|-..| |.++.||..+..+.|... ||.+.+..|++
T Consensus 237 ~~l~GIG~~t~~~L~~lG-I~TigdLa~~~~~~L~~~--fG~~~g~~L~~ 283 (420)
T 3osn_A 237 KEIPGIGYKTAKCLEALG-INSVRDLQTFSPKILEKE--LGISVAQRIQK 283 (420)
T ss_dssp GGSTTCCHHHHHHHHHTT-CCSHHHHHHSCHHHHHHH--HHHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHhC-CCcHHHHhhCCHHHHHHH--hCchHHHHHHH
Confidence 479999999999997766 799999999998888876 88776666654
No 157
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=70.60 E-value=3.3 Score=43.52 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=40.9
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHH
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAI 511 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I 511 (655)
.-+++|+|+++.++|-..| |.++.||..+....|... ||......+++..
T Consensus 180 v~~l~GiG~~~~~~L~~~G-i~t~~dL~~~~~~~L~~~--fG~~~g~~l~~~a 229 (352)
T 1jx4_A 180 IADVPGIGNITAEKLKKLG-INKLVDTLSIEFDKLKGM--IGEAKAKYLISLA 229 (352)
T ss_dssp GGGSTTCCHHHHHHHHTTT-CCBGGGGGSSCHHHHHHH--HCHHHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHHcC-CchHHHHHCCCHHHHHHh--cChhHHHHHHHHh
Confidence 5579999999999996655 799999999998888886 8977566666543
No 158
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=70.14 E-value=0.75 Score=47.66 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=32.5
Q ss_pred CCCCccHHHHHHHHHhCCCHHHHHhcCH-----H----HHhcC------CCCCHHHHHHHHHHhcC
Q psy11423 527 GIRHVGETTAKELANYFKNLECMFKATE-----E----QLLNI------PKIGSTTVKAFIKFINQ 577 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~fgsl~~l~~as~-----e----eL~~i------~GIG~~~A~~I~~~f~~ 577 (655)
.|||||+..|..|.++|+++..|..|-. + .|..+ ..||+.+++.|+.||..
T Consensus 237 ~I~GVs~~~A~~I~~~ypTp~~L~~Ay~~~~~~~e~~~lL~~l~~g~~~r~IG~~lSrkI~~~f~~ 302 (307)
T 2zix_A 237 QVRGVSGEKAAALVDRYSTPASLLAAYDACATPKEQETLLSTIKCGRLQRNLGPALSRTLSQLYCS 302 (307)
T ss_dssp CSTTCCSTTTTTSSSSSCSHHHHHHHHHCCSSGGGTTTTTSCCCCTTTTCCCCHHHHHHHHHHHTC
T ss_pred hccCCCHHHHHHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCccCHHHHHHHHHHHcc
Confidence 5566666666666666666655554422 1 14444 23999999999999874
No 159
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=69.39 E-value=7 Score=40.00 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=43.0
Q ss_pred CCCCccHHHHHHHHHh-CCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHH
Q psy11423 527 GIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKF 574 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~-fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~ 574 (655)
.+||+++..+++|.+. +.+++.+..++..+|.++.|+++..|..++.-
T Consensus 7 ~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~ 55 (322)
T 2i1q_A 7 DLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMG 55 (322)
T ss_dssp TSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHH
Confidence 5789999999999875 88999999999999999999999988888764
No 160
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=68.76 E-value=2.8 Score=34.01 Aligned_cols=22 Identities=18% Similarity=0.788 Sum_probs=19.3
Q ss_pred CCCCCCCcceeecCceeEEecC
Q psy11423 417 ICPICNSKIIYIESNLIARCSG 438 (655)
Q Consensus 417 ~CP~C~~~l~~~~~~~~~~C~n 438 (655)
.||.|+++|....++..+.|.+
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~ 31 (70)
T 2js4_A 10 VCPVCKGRLEFQRAQAELVCNA 31 (70)
T ss_dssp BCTTTCCBEEEETTTTEEEETT
T ss_pred ECCCCCCcCEEeCCCCEEEcCC
Confidence 7999999999877777899976
No 161
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=68.58 E-value=2 Score=45.24 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=18.1
Q ss_pred CCCCccHHHHHHHHHhCCCHHHHHhc
Q psy11423 527 GIRHVGETTAKELANYFKNLECMFKA 552 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~fgsl~~l~~a 552 (655)
||||||+++|-+|++.|+|++.+...
T Consensus 238 Gv~GIG~KtA~kLi~~~gsle~i~~~ 263 (346)
T 2izo_A 238 GIRGIGPERALKIIKKYGKIEKAMEY 263 (346)
T ss_dssp CSTTCCHHHHHHHHHHSSCC------
T ss_pred CCCCcCHHHHHHHHHHcCCHHHHHHH
Confidence 78899999999999999998887654
No 162
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=68.33 E-value=3.3 Score=43.47 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=40.8
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHH
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAI 511 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I 511 (655)
.-+++|+|+++.++|-..| |.++.||..+....|... ||......+++..
T Consensus 181 v~~l~GiG~~~~~~L~~~G-i~t~~dL~~~~~~~L~~~--fG~~~g~~l~~~a 230 (354)
T 3bq0_A 181 IDEIPGIGSVLARRLNELG-IQKLRDILSKNYNELEKI--TGKAKALYLLKLA 230 (354)
T ss_dssp STTSTTCCHHHHHHHTTTT-CCBGGGGGGSCHHHHHHH--HCHHHHHHHHHHH
T ss_pred cccccCcCHHHHHHHHHcC-CccHHHHhcCCHHHHHHH--HCHHHHHHHHHHh
Confidence 4578999999999996655 799999999999888886 8977676666543
No 163
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=67.55 E-value=3.1 Score=33.55 Aligned_cols=22 Identities=27% Similarity=0.854 Sum_probs=19.2
Q ss_pred CCCCCCCcceeecCceeEEecC
Q psy11423 417 ICPICNSKIIYIESNLIARCSG 438 (655)
Q Consensus 417 ~CP~C~~~l~~~~~~~~~~C~n 438 (655)
.||.|+++|....++..+.|.+
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~ 31 (68)
T 2hf1_A 10 VCPLCKGPLVFDKSKDELICKG 31 (68)
T ss_dssp BCTTTCCBCEEETTTTEEEETT
T ss_pred ECCCCCCcCeEeCCCCEEEcCC
Confidence 6999999999877777899976
No 164
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=67.27 E-value=3.4 Score=30.82 Aligned_cols=22 Identities=32% Similarity=0.751 Sum_probs=18.4
Q ss_pred CCCCCCC-cceeecCceeEEecC
Q psy11423 417 ICPICNS-KIIYIESNLIARCSG 438 (655)
Q Consensus 417 ~CP~C~~-~l~~~~~~~~~~C~n 438 (655)
.||.|++ +|+.......+.|.+
T Consensus 7 ~CP~C~~~~l~~d~~~gelvC~~ 29 (50)
T 1pft_A 7 VCPACESAELIYDPERGEIVCAK 29 (50)
T ss_dssp SCTTTSCCCEEEETTTTEEEESS
T ss_pred eCcCCCCcceEEcCCCCeEECcc
Confidence 5999999 888876667899977
No 165
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=67.21 E-value=3 Score=33.68 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.1
Q ss_pred CCCCCCCcceeecCceeEEecC
Q psy11423 417 ICPICNSKIIYIESNLIARCSG 438 (655)
Q Consensus 417 ~CP~C~~~l~~~~~~~~~~C~n 438 (655)
.||.|+++|....++..+.|.+
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~ 31 (69)
T 2pk7_A 10 ACPICKGPLKLSADKTELISKG 31 (69)
T ss_dssp CCTTTCCCCEECTTSSEEEETT
T ss_pred eCCCCCCcCeEeCCCCEEEcCC
Confidence 7999999999877777899976
No 166
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=66.98 E-value=1.2 Score=46.28 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred cccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHHH
Q psy11423 460 MNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (655)
Q Consensus 460 l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~ 513 (655)
-.++||++.++++|-++|+ .++.|+...+..+|....|+.+..+++++++..+
T Consensus 15 ~~l~g~~~~~~~~l~~~g~-~t~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~ 67 (324)
T 2z43_A 15 NDLPGISQTVINKLIEAGY-SSLETLAVASPQDLSVAAGIPLSTAQKIIKEARD 67 (324)
T ss_dssp ------------------------------------------------------
T ss_pred HHcCCCCHHHHHHHHHcCC-CcHHHHHcCCHHHHHHhhCCCHHHHHHHHHHHHh
Confidence 3567999999999988884 8999999999999999999999999999887653
No 167
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=66.97 E-value=1.4 Score=46.91 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.7
Q ss_pred CCCCccHHHHHHHHHhCCCHHHHHhc
Q psy11423 527 GIRHVGETTAKELANYFKNLECMFKA 552 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~fgsl~~l~~a 552 (655)
||||||+++|-+|++.|+|++++...
T Consensus 255 GVpGIG~KtA~kLl~~~gsle~il~~ 280 (363)
T 3ory_A 255 GFEGIGPKKALQLVKAYGGIEKIPKP 280 (363)
T ss_dssp CSTTCCHHHHHHHHHHHTSSTTSCGG
T ss_pred CCCCcCHHHHHHHHHHcCCHHHHHHh
Confidence 88899999999999999999877653
No 168
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=66.93 E-value=11 Score=34.62 Aligned_cols=92 Identities=20% Similarity=0.236 Sum_probs=63.3
Q ss_pred HHHHHHHcCCCCChHHHh--cCChhhhccccCCcH-HHHHHHHHHHHHhccc-----------chhHHHHHhCCCCccHH
Q psy11423 469 MIEKLVNANIVVTAVDLY--KINFKNLLRLDRVSN-KLANNILLAIQKSKLT-----------TFSRFIYALGIRHVGET 534 (655)
Q Consensus 469 ~i~~L~~~g~I~~i~DL~--~L~~~~L~~l~GfG~-Ksa~nll~~I~~sk~~-----------~l~r~L~algIpgIG~~ 534 (655)
-...+.++|+ .+...+- .|+.+||..+ |+.. ---.+|+.+|+.-+.. ++..||.++|.+. -
T Consensus 29 Y~~~F~~~g~-d~~~~l~~~~lt~~DL~~l-GI~~~ghRkkil~ai~~L~~~~~~~~d~~~~~~v~~WL~~i~L~q---Y 103 (148)
T 2kiv_A 29 YENHLMANGF-DNVQAMGSNVMEDQDLLEI-GILNSGHRQRILQAIQLLPKMRPIGHDGAHPTSVAEWLDSIELGD---Y 103 (148)
T ss_dssp SHHHHHHTTT-TBGGGGTSSCCCHHHHHHH-CCSSTTSHHHHHHHHHHCSCCCSSCCCCCCCSSHHHHHHTTTCCT---H
T ss_pred HHHHHHHcCC-CHHHHhhhccCCHHHHHHC-CCCCHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHCCcHH---H
Confidence 3456666674 6665555 7999999877 5553 3456788888875431 4568999998773 3
Q ss_pred HHHHHHHhCCCHHHHHhcCHHHHhcCCCCCH
Q psy11423 535 TAKELANYFKNLECMFKATEEQLLNIPKIGS 565 (655)
Q Consensus 535 ~Ak~L~~~fgsl~~l~~as~eeL~~i~GIG~ 565 (655)
.-.-....|.+++.+...+.++|.+--||..
T Consensus 104 ~~~F~~~g~~~~~~l~~lt~~dLl~~lGI~~ 134 (148)
T 2kiv_A 104 TKAFLINGYTSMDLLKKIAEVELINVLKINL 134 (148)
T ss_dssp HHHHHHHTCCSHHHHTSCCHHHHHHHTCCCC
T ss_pred HHHHHHcCCChHHHHHhCCHHHHHHhCCCCC
Confidence 3344455677899999999999854447753
No 169
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=66.34 E-value=3.2 Score=33.41 Aligned_cols=22 Identities=14% Similarity=0.444 Sum_probs=19.2
Q ss_pred CCCCCCCcceeecCceeEEecC
Q psy11423 417 ICPICNSKIIYIESNLIARCSG 438 (655)
Q Consensus 417 ~CP~C~~~l~~~~~~~~~~C~n 438 (655)
.||.|+++|....++..+.|.+
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~ 31 (68)
T 2jr6_A 10 VCPVTKGRLEYHQDKQELWSRQ 31 (68)
T ss_dssp BCSSSCCBCEEETTTTEEEETT
T ss_pred ECCCCCCcCeEeCCCCEEEcCC
Confidence 7999999999877677899976
No 170
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=66.11 E-value=4.6 Score=44.83 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=40.7
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHH
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILL 509 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~ 509 (655)
.-+++|+|+++.++|-..| |.++.||..+..+.|... ||.+....|++
T Consensus 317 V~~l~GIG~~t~~kL~~lG-I~TigDLa~~~~~~L~~~--fG~~~g~~L~~ 364 (504)
T 3gqc_A 317 VTNLPGVGHSMESKLASLG-IKTCGDLQYMTMAKLQKE--FGPKTGQMLYR 364 (504)
T ss_dssp GGGSTTCCHHHHHHHHHTT-CCBHHHHTTSCHHHHHHH--HCHHHHHHHHH
T ss_pred hhHhhCcCHHHHHHHHHcC-CCcHHHHHhccHHHHHHh--hChhHHHHHHH
Confidence 4578999999999998776 799999999999888886 89877766653
No 171
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=65.91 E-value=5.9 Score=38.85 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=40.1
Q ss_pred CCCCeEecccccCccEEEecCCCC-chHHHHHHcCCeeeCHHHHHHHHh
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQKPG-KKLEKAIKLNIKILDEKNFVKIVK 647 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~~g-~K~~kA~~lgi~ii~e~~f~~~l~ 647 (655)
.+||.+...+ .+++.||++.... .|...|...|++|++++-+.+.+.
T Consensus 38 ~lGg~v~~~~-~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~~c~~ 85 (219)
T 3sqd_A 38 ILGGEVAESA-QKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFR 85 (219)
T ss_dssp HTTCEECSSG-GGCSEEECSSCCCCHHHHHHTTTCSEEECHHHHHHHHH
T ss_pred HCCCEEeCCC-CCceEEEECCCCCCHHHHHHHHcCCCEecHHHHHHHHH
Confidence 7789998887 6777999987655 599999999999999999988774
No 172
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=65.69 E-value=6.8 Score=35.78 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=62.3
Q ss_pred EEECChhhhhhhCC---CCCCCCceEeecCCcceeeE-------EEEEEEEeecCcceeeeE-EEEEEEEE----CCEEE
Q psy11423 299 YKINCLSTQKKLGF---TSRAPRFALAYKFLSKEALT-------KIKAINIQIGRTGIITPV-ALLKPVLI----DGITI 363 (655)
Q Consensus 299 ikv~~~~~~~~lG~---ts~~PrwaiA~Kf~~~~~~T-------~v~~I~~qvGRTG~itPv-A~lePV~l----~G~tV 363 (655)
+.+-+...++..|- ++-.|.-++-|.||..+..| .=+||.| +.+.|+|+-+ ..+.|-.. ++..+
T Consensus 24 vevA~t~~~R~~GLM~R~~l~~~~GMLF~f~~~~~~~fwMknt~~PLDiiF-ld~~g~Vv~i~~~~~P~~~~~~~~~~~a 102 (136)
T 3pjy_A 24 VELAVDPSQREQGLMYRRQMAPDHGMLFDFGETRPVMMWMKNTYLPLDMLF-IASDGTIRTIHENAVPHSEAIIDSREPV 102 (136)
T ss_dssp EEEECSHHHHHHTTSSCCCCCTTEEEEEEEEEEECCEECCTTCCSCEEEEE-ECTTSBEEEEEEEECTTCCCCEECCSCE
T ss_pred EEEcCCHHHHHhccCCCCCCCCCceEEEecCCCceEEEEeeccccceEEEE-ECCCCEEEEEEccCCCCcCCCCCCCCce
Confidence 55667777777773 34456778888888776555 1256666 5678999888 67778543 33345
Q ss_pred EEeeCCCHHHHHhcCCCCCCEEEE
Q psy11423 364 TRATLHNESEIYRKNIQIGDTVVV 387 (655)
Q Consensus 364 sratLhN~~~i~~~~i~iGd~V~v 387 (655)
..|==-|..+++++||.+||+|.+
T Consensus 103 ~~VLEl~aG~~~~~gi~~Gd~v~~ 126 (136)
T 3pjy_A 103 AYVLELNAGTVKRLGVSPGDRLEG 126 (136)
T ss_dssp EEEEEEETTHHHHHTCCTTCEEEE
T ss_pred eEEEEeCcChHHhcCCCCCCEEEE
Confidence 555555899999999999999975
No 173
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=65.15 E-value=9 Score=33.30 Aligned_cols=49 Identities=8% Similarity=0.254 Sum_probs=42.2
Q ss_pred CCCCeEecccccCccEEEecCCCCchHHHHHHc--CCeeeCHHHHHHHHhc
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKL--NIKILDEKNFVKIVKG 648 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~~g~K~~kA~~l--gi~ii~e~~f~~~l~~ 648 (655)
++||.+....+.+++++|+....+.+++.|.+. +++++.++-+.+.++.
T Consensus 33 a~GG~v~~~~~~~vTHvIt~~~~d~~~~~a~~~~p~~~~V~P~WI~~Ci~~ 83 (104)
T 3pc6_A 33 AFNGELEDYMNERVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSCNEK 83 (104)
T ss_dssp HTTCEECSSCCTTCCEEEESSCCCHHHHHHHTTCTTCEEECHHHHHHHHHH
T ss_pred HcCCEEEcccCCCceEEEeCCCCChhHHHHhhhCCCCeEEccHHHHHHHhc
Confidence 789999999999999999988777888887754 6999999998887753
No 174
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=65.05 E-value=3.1 Score=44.02 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=41.3
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHH
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLA 510 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~ 510 (655)
.-+++|+|+++.++|-..| |.++.||..+....|... ||++....|++.
T Consensus 181 v~~l~GiG~~~~~~L~~~G-I~Ti~dL~~~~~~~L~~~--fG~~~g~~l~~~ 229 (362)
T 4f4y_A 181 IDEIPGIGSVLARRLNELG-IQKLRDILSKNYNELEKI--TGKAKALYLLKL 229 (362)
T ss_dssp STTSTTCCSTTHHHHHHTT-CCBGGGGTTSCHHHHHHH--HCHHHHHHHHHH
T ss_pred hhhccCCCHHHHHHHHHcC-CChHHHHhcCCHHHHHHH--hChHHHHHHHHH
Confidence 4479999999999998776 799999999998888875 998877776654
No 175
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=65.02 E-value=3.8 Score=43.74 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=22.7
Q ss_pred CCCCccHHHHHHHHHhCCCHHHHHhc
Q psy11423 527 GIRHVGETTAKELANYFKNLECMFKA 552 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~fgsl~~l~~a 552 (655)
||||||+++|-+|++.|++++.+...
T Consensus 236 ~IpGIG~KtA~kLl~~~gsle~i~~~ 261 (379)
T 1ul1_X 236 SIRGIGPKRAVDLIQKHKSIEEIVRR 261 (379)
T ss_dssp CCTTCCHHHHHHHHHHSSSHHHHHTT
T ss_pred CCCCcCHHHHHHHHHHcCCHHHHHHH
Confidence 59999999999999999999888654
No 176
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=64.61 E-value=8.2 Score=40.27 Aligned_cols=61 Identities=8% Similarity=0.084 Sum_probs=44.8
Q ss_pred HhhccccccccccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHH
Q psy11423 448 KAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLA 510 (655)
Q Consensus 448 ~~~i~~F~sk~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~ 510 (655)
.+++-..-+ ..+.+||+|+.++++|.++| +.++.||..++.+++..+=|+.+...+.+.+.
T Consensus 153 ~q~~w~~~~-pL~Qlp~i~~~~~~~l~~~~-i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~ 213 (339)
T 2q0z_X 153 TQAMWSKDS-YLKQLPHFTSEHIKRCTDKG-VESVFDIMEMEDEERNALLQLTDSQIADVARF 213 (339)
T ss_dssp HHTCCTTSC-GGGGSTTCCHHHHHHHHHTT-CCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHhcCCCCC-ceecCCCCCHHHHHHHHhcC-CCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344433333 68899999999999998887 68999999998877766655666555555443
No 177
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_A
Probab=63.43 E-value=1.5 Score=46.05 Aligned_cols=48 Identities=17% Similarity=0.093 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHHH
Q psy11423 465 LGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (655)
Q Consensus 465 LG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~ 513 (655)
|.-...+-|-.+| |.++.||...++++|+++++||+||.+.|.+.++.
T Consensus 262 LsvRs~NCLKra~-I~tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~~ 309 (329)
T 3lu0_A 262 LTVRSANCLKAEA-IHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLAS 309 (329)
T ss_dssp -------------------------------------------------
T ss_pred CCHHHHHHHHHcC-CcCHHHHhhCCHHHHhhCcCCChhhHHHHHHHHHH
Confidence 3444455565555 79999999999999999999999999999887764
No 178
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=63.04 E-value=6.4 Score=38.03 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=40.3
Q ss_pred CCCCeEecccccCccEEEecCCC-CchHHHHHHcCCeeeCHHHHHHHHh
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQKP-GKKLEKAIKLNIKILDEKNFVKIVK 647 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~~-g~K~~kA~~lgi~ii~e~~f~~~l~ 647 (655)
.+||.+.+++++ +++||++... +.|...|...|++|++.+-+.+.++
T Consensus 31 ~lGg~~~~~~~~-~THlI~~~~~rt~K~l~a~~~g~~IV~~~Wl~~~~~ 78 (209)
T 2etx_A 31 ALGGSLAGSAAE-ASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRK 78 (209)
T ss_dssp HTTCEECSSTTT-CSEEECSSCCCSHHHHHHHHHTCCEECTHHHHHHHH
T ss_pred HCCCEEeCCCCC-ceEEEECCCCCCHHHHHHHhcCCccccHHHHHHHHH
Confidence 778999999986 7799998754 4788899999999999999988774
No 179
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=62.92 E-value=11 Score=47.94 Aligned_cols=55 Identities=7% Similarity=0.108 Sum_probs=48.3
Q ss_pred cccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHHH
Q psy11423 458 KAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513 (655)
Q Consensus 458 ~~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~ 513 (655)
..+.|||+|+.++++|+++| |+|+.||..++.+++..+=++.+....++.+.+..
T Consensus 1558 ~L~qip~i~~~~ar~l~~~g-i~t~~dl~~~~~~~~~~ll~~~~~~~~~i~~~~~~ 1612 (1724)
T 4f92_B 1558 YLKQLPHFTSEHIKRCTDKG-VESVFDIMEMEDEERNALLQLTDSQIADVARFCNR 1612 (1724)
T ss_dssp GGGGSTTCCHHHHHHHHHHT-CCSHHHHHSSCHHHHTTSSCCCHHHHHHHHHHHHH
T ss_pred CEecCCCCCHHHHHHHHHCC-CCCHHHHHhCCHHHHHHHHCCChHHHHHHHHHHHh
Confidence 46789999999999999999 59999999999999998888888888877777654
No 180
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=62.91 E-value=4.3 Score=31.41 Aligned_cols=23 Identities=26% Similarity=0.702 Sum_probs=19.0
Q ss_pred CCCCCCCcceeecCceeEEecCCCcCC
Q psy11423 417 ICPICNSKIIYIESNLIARCSGSWIEC 443 (655)
Q Consensus 417 ~CP~C~~~l~~~~~~~~~~C~n~~~~C 443 (655)
.||.|+++|+..+ ..+.|.|+ . |
T Consensus 12 ~CP~c~~~L~~~~--~~L~C~~~-~-c 34 (56)
T 2kpi_A 12 ACPACHAPLEERD--AELICTGQ-D-C 34 (56)
T ss_dssp CCSSSCSCEEEET--TEEEECSS-S-C
T ss_pred eCCCCCCcceecC--CEEEcCCc-C-C
Confidence 7999999998776 57899974 4 7
No 181
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=62.65 E-value=15 Score=29.84 Aligned_cols=34 Identities=12% Similarity=0.301 Sum_probs=29.5
Q ss_pred hCCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHh
Q psy11423 542 YFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575 (655)
Q Consensus 542 ~fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f 575 (655)
.+.++..|...+.++|.+++|+|++..+.|.+.+
T Consensus 28 gI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L 61 (73)
T 1z3e_B 28 GINTVQELANKTEEDMMKVRNLGRKSLEEVKAKL 61 (73)
T ss_dssp TCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHH
Confidence 3668999999999999999999999988886654
No 182
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=62.62 E-value=4.4 Score=32.57 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.1
Q ss_pred CCCCCCCcceeecCceeEEecC
Q psy11423 417 ICPICNSKIIYIESNLIARCSG 438 (655)
Q Consensus 417 ~CP~C~~~l~~~~~~~~~~C~n 438 (655)
.||.|.++|.....+..+.|.+
T Consensus 12 ~CP~ck~~L~~~~~~g~LvC~~ 33 (67)
T 2jny_A 12 ACPKDKGPLRYLESEQLLVNER 33 (67)
T ss_dssp BCTTTCCBCEEETTTTEEEETT
T ss_pred CCCCCCCcCeEeCCCCEEEcCC
Confidence 7999999999877677899976
No 183
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=62.50 E-value=3 Score=43.77 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=16.4
Q ss_pred CCCCccHHHHHHHHHhCCCHHHHHh
Q psy11423 527 GIRHVGETTAKELANYFKNLECMFK 551 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~fgsl~~l~~ 551 (655)
||||||+++|-+|++.|+|++.+..
T Consensus 241 gv~GiG~ktA~kli~~~gsle~il~ 265 (340)
T 1b43_A 241 GIKGIGLKKALEIVRHSKDPLAKFQ 265 (340)
T ss_dssp CSTTCCHHHHHHHHHTCSSGGGGTG
T ss_pred CCCCccHHHHHHHHHHcCCHHHHHc
Confidence 5666666666666666666665544
No 184
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=61.21 E-value=10 Score=38.16 Aligned_cols=48 Identities=10% Similarity=0.078 Sum_probs=38.7
Q ss_pred CCCCeEecccccC------ccEEEecCCC-CchHHHHHHcCCeeeCHHHHHHHHh
Q psy11423 600 TKGGKVVNFISKN------TNYLVKGQKP-GKKLEKAIKLNIKILDEKNFVKIVK 647 (655)
Q Consensus 600 ~~G~~v~~sVsk~------t~ylv~g~~~-g~K~~kA~~lgi~ii~e~~f~~~l~ 647 (655)
++||++..+++.. +.+||+.... ..|.-.|...|++|++.+-+.+-+.
T Consensus 69 ~~GG~v~~~~~~~~~~~~~~t~LIa~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~ 123 (259)
T 1kzy_C 69 AGAGYILEDFNEAQCNTAYQCLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCH 123 (259)
T ss_dssp TTTCEECSSCCTTTTTTTCEEEEEESSCCCSHHHHHHHHHTCCEEETHHHHHHHH
T ss_pred HCCCEEecCccccccccCCCeEEEcCCCCCcHHHHHHHhcCCCCccHHHHHHHHH
Confidence 7899999888865 4578887643 3688889889999999999888764
No 185
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=60.81 E-value=17 Score=30.56 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=37.1
Q ss_pred HHHHHhCCCCccHHHHHHHHH-hCCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHh
Q psy11423 521 RFIYALGIRHVGETTAKELAN-YFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575 (655)
Q Consensus 521 r~L~algIpgIG~~~Ak~L~~-~fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f 575 (655)
+.+..|+++ .....-|.+ .+.++..|...+.++|.+++++|++..+.|.+.+
T Consensus 12 ~~I~~L~LS---vRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L 64 (86)
T 3k4g_A 12 RPVDDLELT---VRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVL 64 (86)
T ss_dssp SBGGGGCCC---HHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CcHHHhCCC---HHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHH
Confidence 344455554 223333333 3668999999999999999999999998886654
No 186
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=60.31 E-value=11 Score=39.77 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=23.1
Q ss_pred CCCCccHHHHHHHHHhC--CCHHHHHhc
Q psy11423 527 GIRHVGETTAKELANYF--KNLECMFKA 552 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~f--gsl~~l~~a 552 (655)
||||||+++|-+|++.| ++++.+...
T Consensus 229 gv~GiG~ktA~kli~~~~~~~l~~il~~ 256 (352)
T 3qe9_Y 229 SLRGIGLAKACKVLRLANNPDIVKVIKK 256 (352)
T ss_dssp CCTTCCHHHHHHHHHHCCCSCHHHHHTT
T ss_pred CCCCeeHHHHHHHHHHhCCCCHHHHHHH
Confidence 89999999999999999 688887764
No 187
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=59.99 E-value=9.3 Score=45.96 Aligned_cols=48 Identities=17% Similarity=0.112 Sum_probs=34.9
Q ss_pred CCCCccHHHHHHHHHhCC-CHHHHHhcCHHHHhcCCCCCHHHHHHHHHHhc
Q psy11423 527 GIRHVGETTAKELANYFK-NLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~fg-sl~~l~~as~eeL~~i~GIG~~~A~~I~~~f~ 576 (655)
-++|+|++.|+.|.+... .-- .-.+.++|..++|||+++-++...|+.
T Consensus 721 ~v~GlGp~kA~~Iv~~r~~~~G--~f~sr~~L~~v~~iG~k~fe~~agflr 769 (1030)
T 3psf_A 721 YISGFGKRKAIDFLQSLQRLNE--PLLARQQLITHNILHKTIFMNSAGFLY 769 (1030)
T ss_dssp GSTTCCHHHHHHHHHHHHHTCS--CCCCTTHHHHTTSSCHHHHHHHTTTEE
T ss_pred hCCCCCHHHHHHHHHHHHHhCC--CCCCHHHHHhcCCccHHHHHhccCeEE
Confidence 689999999998876431 000 113457888999999999999888763
No 188
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=59.37 E-value=4.2 Score=44.11 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=39.7
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHH
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILL 509 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~ 509 (655)
.-++.|+|+++..+|.+...|.++.||..+....|... ||++....|++
T Consensus 255 v~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~~~--fG~~~g~~L~~ 303 (435)
T 4ecq_A 255 IRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSH--FGEKNGSWLYA 303 (435)
T ss_dssp GGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHHHH--HCHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHHHH--hCccHHHHHHH
Confidence 44789999999888656556899999999999888876 88777766653
No 189
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=59.35 E-value=7.7 Score=40.63 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=42.8
Q ss_pred CCCCccHHHHHHHHHh-CCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHH
Q psy11423 527 GIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKF 574 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~-fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~ 574 (655)
.+||||+..+++|.+. |.+++.+..++..+|.++.|+++..|..+.+.
T Consensus 39 ~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~ 87 (349)
T 1pzn_A 39 DLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQA 87 (349)
T ss_dssp CCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHH
Confidence 4589999999999875 99999999999999999999998888887764
No 190
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=57.74 E-value=5.1 Score=43.40 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=39.0
Q ss_pred ccccCCCCHHHHHHHHH--cCCCCChHHHhcC-ChhhhccccCCcHHHHHHHHH
Q psy11423 459 AMNIIGLGKKMIEKLVN--ANIVVTAVDLYKI-NFKNLLRLDRVSNKLANNILL 509 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~--~g~I~~i~DL~~L-~~~~L~~l~GfG~Ksa~nll~ 509 (655)
.-+++|+|+++.++|-+ .| |.++.||..+ ..+.|... ||.+..+.+++
T Consensus 243 v~~l~GiG~~~~~~L~~~~~G-I~ti~dL~~~~~~~~L~~~--fG~~~g~~l~~ 293 (434)
T 2aq4_A 243 LDDLPGVGHSTLSRLESTFDS-PHSLNDLRKRYTLDALKAS--VGSKLGMKIHL 293 (434)
T ss_dssp GGGSTTCCHHHHHHHHHHTTC-CCSHHHHHHHCCHHHHHHH--HCSSHHHHHHH
T ss_pred cccccCcCHHHHHHHHHhcCC-ceEHHHHHhcCCHHHHHHH--hCHHHHHHHHH
Confidence 45789999999999988 55 7999999998 88888876 78766665554
No 191
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=56.97 E-value=6.5 Score=39.98 Aligned_cols=44 Identities=20% Similarity=0.560 Sum_probs=29.4
Q ss_pred CCCEEE----EEecCcccceeeccccc-CCCC-------CCccccCCCCCCCCCCc
Q psy11423 381 IGDTVV----VHRSGNVIPKITSSILS-LRPN-------DSKIFKIPNICPICNSK 424 (655)
Q Consensus 381 iGd~V~----v~raGdVIP~I~~vv~~-~r~~-------~~~~~~~P~~CP~C~~~ 424 (655)
+|-.|. |+|+++|.|++....-. .+.+ ....+..|..||.|++.
T Consensus 110 igkLV~v~GiV~r~S~V~p~~~~~~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~ 165 (279)
T 1ltl_A 110 IGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAVTQSTNMITEPSLCSECGGR 165 (279)
T ss_dssp TTSEEEEEEEEEEECCCEEEEEEEEEEETTTCCEEEEECSSSSCCCCSCCTTTCCC
T ss_pred CCCEEEEEEEEEEecceEEEEEEEEEEcCCCCCEEEEEecCCcccCCCcCCCCCCC
Confidence 666665 67999999999776421 1111 12246778899999874
No 192
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=56.58 E-value=12 Score=34.35 Aligned_cols=87 Identities=16% Similarity=0.053 Sum_probs=57.4
Q ss_pred EEECChhhhhhhCC---CCCCCCceEeecCCcceeeE-------EEEEEEEeecCcceeeeEEE-EEEEEECC----EEE
Q psy11423 299 YKINCLSTQKKLGF---TSRAPRFALAYKFLSKEALT-------KIKAINIQIGRTGIITPVAL-LKPVLIDG----ITI 363 (655)
Q Consensus 299 ikv~~~~~~~~lG~---ts~~PrwaiA~Kf~~~~~~T-------~v~~I~~qvGRTG~itPvA~-lePV~l~G----~tV 363 (655)
+.+-+...++..|- ++-.|.-++-|-||..+..| .=+||.| +.+.|+|+-+.+ +.|-...- ..+
T Consensus 38 vevA~t~~~R~~GLM~R~~l~~~~GMLFvf~~~~~~~fwMknt~~PLDiiF-id~dg~Vv~i~~~~~P~~~~~~~s~~~a 116 (140)
T 3m7a_A 38 SELARTSAEQAKGLMFRTELGDEEGMIFLRNPPDMATFWMRNTVIPLDIIF-VGLDRRVMNIAANAVPYDETPLPAAGPT 116 (140)
T ss_dssp EEEECSHHHHHHTTTTCCCCCTTEEEEEECSSCCEEEECCTTCCSCEEEEE-ECTTSBEEEEEEEECTTCCCCEEEEEEC
T ss_pred EEEcCCHHHHHhccCCCCCCCCCceEEEecCCCceEEEEeeccCcceEEEE-ECCCCeEEEEEccCCCCcCCCCCCCCcc
Confidence 45556666666663 33355667778887766555 2245655 567899988875 77755432 223
Q ss_pred EEeeCCCHHHHHhcCCCCCCEEE
Q psy11423 364 TRATLHNESEIYRKNIQIGDTVV 386 (655)
Q Consensus 364 sratLhN~~~i~~~~i~iGd~V~ 386 (655)
..|==-|..+++++||.+||+|.
T Consensus 117 ~~VLEl~aG~~~~~gi~~Gd~v~ 139 (140)
T 3m7a_A 117 LAVLEINGGLAARLGIKPGDKVE 139 (140)
T ss_dssp SEEEEEETTHHHHHTCCTTCEEE
T ss_pred cEEEEeCcChHHHcCCCCCCEEe
Confidence 33333488999999999999985
No 193
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1 d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A 2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A* 3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A* 1ynn_A* ...
Probab=56.53 E-value=2.3 Score=44.35 Aligned_cols=47 Identities=17% Similarity=0.347 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHH
Q psy11423 465 LGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQ 512 (655)
Q Consensus 465 LG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~ 512 (655)
|.-...+-|-.+| |.++.||...++++|++++.||.||.+.|.+.++
T Consensus 261 LsvRs~NcLk~a~-I~ti~dL~~~se~~l~~~~n~G~kSl~Ei~~~L~ 307 (315)
T 2a6h_A 261 LSTRVLHSLKEEG-IESVRALLALNLKDLKNIPGIGERSLEEIKEALE 307 (315)
T ss_dssp ------------------------------------------------
T ss_pred CcHHHHHHHHHcC-CcCHHHHhhCCHHHHhcCCCCCcchHHHHHHHHH
Confidence 4455555565555 7999999999999999999999999999988775
No 194
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=56.14 E-value=5.1 Score=30.85 Aligned_cols=24 Identities=21% Similarity=0.509 Sum_probs=18.3
Q ss_pred CCCCCCCCCcceeecCceeEEecC
Q psy11423 415 PNICPICNSKIIYIESNLIARCSG 438 (655)
Q Consensus 415 P~~CP~C~~~l~~~~~~~~~~C~n 438 (655)
-..||.||+.+........++|..
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~k 41 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGR 41 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTT
T ss_pred cccCcCCCCceeEeccCCEEECCC
Confidence 468999999776555556889966
No 195
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=56.03 E-value=15 Score=30.33 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=37.5
Q ss_pred hHHHHHhCCCCccHHHHHHHHH-hCCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHh
Q psy11423 520 SRFIYALGIRHVGETTAKELAN-YFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575 (655)
Q Consensus 520 ~r~L~algIpgIG~~~Ak~L~~-~fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f 575 (655)
...+..|+++ ......|.+ .+.++..|...+.++|.++.|+|++..+.|.+.+
T Consensus 15 ~~~Ie~L~LS---~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L 68 (79)
T 3gfk_B 15 EMTIEELDLS---VRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKL 68 (79)
T ss_dssp GCBGGGSCCB---HHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHH
T ss_pred cCcHHHhCCC---HHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHHH
Confidence 3445555554 223333333 3668999999999999999999999988886654
No 196
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=55.73 E-value=5.6 Score=40.16 Aligned_cols=43 Identities=21% Similarity=0.464 Sum_probs=29.3
Q ss_pred CCCEEE----EEecCcccceeecccccC---CCC----------CCccccCCCCCCCCCC
Q psy11423 381 IGDTVV----VHRSGNVIPKITSSILSL---RPN----------DSKIFKIPNICPICNS 423 (655)
Q Consensus 381 iGd~V~----v~raGdVIP~I~~vv~~~---r~~----------~~~~~~~P~~CP~C~~ 423 (655)
+|-.|. |+|+++|.|++....-.= +.+ ....+..|..||.|++
T Consensus 117 igkLV~v~GiV~r~S~V~p~~~~~~f~C~~~~C~~~~~~~~~~~~~~~~~~P~~Cp~C~~ 176 (268)
T 2vl6_A 117 IGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGK 176 (268)
T ss_dssp TTSEEEEEEEEEEECCCEEEEEECEEEEECTTCCCEEESSTTSCCCTTCCCCSBCTTTCC
T ss_pred CCCeEEEEEEEEEcCCcceEeEEEEEECCCCCCCCEEeeeecccCCCcccCCccCCCCCC
Confidence 666664 679999999997764321 122 1234677889999987
No 197
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=55.43 E-value=13 Score=45.57 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=36.1
Q ss_pred CCCCccHHHHHHHHHhCCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHhc
Q psy11423 527 GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f~ 576 (655)
-++|+|+..|+.|.+....- .=.-.+.++|..++|||+++-++...|+.
T Consensus 718 ~v~GlGp~kA~~Iv~~r~~~-~G~f~sr~~L~~v~~iG~k~fe~~agflr 766 (1219)
T 3psi_A 718 YISGFGKRKAIDFLQSLQRL-NEPLLARQQLITHNILHKTIFMNSAGFLY 766 (1219)
T ss_dssp GSTTCCHHHHHHHHHHHHHH-CSCCCCTTHHHHTTCSCHHHHHHHGGGEE
T ss_pred hCCCCCHHHHHHHHHHHHHh-CCCCCCHHHHhhCCCccHHHHHhccccEE
Confidence 68999999999987643100 00123567899999999999999988875
No 198
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=55.33 E-value=6.6 Score=35.51 Aligned_cols=23 Identities=35% Similarity=0.871 Sum_probs=18.0
Q ss_pred CCCCCCCCCCcceeecCceeEEecC
Q psy11423 414 IPNICPICNSKIIYIESNLIARCSG 438 (655)
Q Consensus 414 ~P~~CP~C~~~l~~~~~~~~~~C~n 438 (655)
+| .||.|+++-+..+ +..+.|+-
T Consensus 27 lP-~CP~C~seytYeD-g~l~vCPe 49 (138)
T 2akl_A 27 LP-PCPQCNSEYTYED-GALLVCPE 49 (138)
T ss_dssp SC-CCTTTCCCCCEEC-SSSEEETT
T ss_pred CC-CCCCCCCcceEec-CCeEECCc
Confidence 45 5999999988764 56788965
No 199
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=54.92 E-value=12 Score=37.70 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=39.8
Q ss_pred CCCCeEecccccCccEEEecCCCCchHHHHHHcC-CeeeCHHHHHHHHhc
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLN-IKILDEKNFVKIVKG 648 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~~g~K~~kA~~lg-i~ii~e~~f~~~l~~ 648 (655)
++||++..+.+++|.++|++. .+.|...|.+.| ++|+.++-+.+-++.
T Consensus 36 ~~GG~v~~n~~~~t~~iIa~~-~~~k~~~~~~~g~~~IV~p~Wv~Dci~~ 84 (263)
T 3ii6_X 36 EFGGYIVQNPGPDTYCVIAGS-ENIRVKNIILSNKHDVVKPAWLLECFKT 84 (263)
T ss_dssp HTTCEECSSCCTTEEEEECSS-CCHHHHHHHHSCSCCEECHHHHHHHHHH
T ss_pred HcCCEEEecCCCCEEEEEeCC-CCHHHHHHHhcCCCCEeehHHHHHHHhc
Confidence 889999988898886667764 458888888888 999999999887753
No 200
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=54.81 E-value=5.4 Score=39.69 Aligned_cols=28 Identities=21% Similarity=0.476 Sum_probs=19.0
Q ss_pred CCCCCCCC-cceeecC---ceeEEecCCCcCCHHHH
Q psy11423 416 NICPICNS-KIIYIES---NLIARCSGSWIECIAQR 447 (655)
Q Consensus 416 ~~CP~C~~-~l~~~~~---~~~~~C~n~~~~C~~q~ 447 (655)
.+||.||+ +|..-+. -++++|++ |-++.
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaDF~C~~----C~Eey 66 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVADFYCNH----CSEEF 66 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCEEECTT----TCCEE
T ss_pred CcCCCCCChhhhhccCCCcccccccCC----cchhh
Confidence 48999999 5654332 36899988 86553
No 201
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=51.59 E-value=15 Score=36.21 Aligned_cols=75 Identities=8% Similarity=-0.109 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCCCChHHHhcCChhhhcc---ccC--CcHHHHHHHHHHHHHh------cccchhHHHHH-h-CCCCccH
Q psy11423 467 KKMIEKLVNANIVVTAVDLYKINFKNLLR---LDR--VSNKLANNILLAIQKS------KLTTFSRFIYA-L-GIRHVGE 533 (655)
Q Consensus 467 ~k~i~~L~~~g~I~~i~DL~~L~~~~L~~---l~G--fG~Ksa~nll~~I~~s------k~~~l~r~L~a-l-gIpgIG~ 533 (655)
.+.+.+.++.. +.+|..++.++|.. --| |...+|.+|.+..+.. ...+....... + .+||||+
T Consensus 65 ~~~~~~a~~~L----p~~l~~~~~eeL~~~Ir~~G~Rf~~~KA~~I~~~a~~ig~l~~~~~~~~~~~r~~L~~~l~GVG~ 140 (219)
T 3n0u_A 65 AEGGIRAQKEI----GKGFVHLPLEELAEKLREVGHRYPQKRAEFIVENRKLLGKLKNLVKGDPFQSREFLVRNAKGIGW 140 (219)
T ss_dssp HHHHHHHHHHH----TTHHHHCCHHHHHHHHHHTTCSSHHHHHHHHHHHGGGTTTHHHHHHSCHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHH----HHHHHcCCHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhCCCCCH
Confidence 34444544444 66777788776543 236 7788888887755421 11222333333 3 7999999
Q ss_pred HHHHHHHHhCCC
Q psy11423 534 TTAKELANYFKN 545 (655)
Q Consensus 534 ~~Ak~L~~~fgs 545 (655)
++|..++..++.
T Consensus 141 kTA~~vL~~~g~ 152 (219)
T 3n0u_A 141 KEASHFLRNTGV 152 (219)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHHHHcCC
Confidence 999988765664
No 202
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=51.48 E-value=14 Score=36.35 Aligned_cols=48 Identities=13% Similarity=0.002 Sum_probs=41.1
Q ss_pred CCCCCeEecccccCccEEEecCCC-CchHHHHHHcCCeeeCHHHHHHHHh
Q psy11423 599 NTKGGKVVNFISKNTNYLVKGQKP-GKKLEKAIKLNIKILDEKNFVKIVK 647 (655)
Q Consensus 599 ~~~G~~v~~sVsk~t~ylv~g~~~-g~K~~kA~~lgi~ii~e~~f~~~l~ 647 (655)
..+|+.+.+++++ ++.||++... +.|.-.|...|++|++.+-+.+.+.
T Consensus 26 ~~lGg~v~~~~~~-~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~~~~~ 74 (220)
T 3l41_A 26 KKLDMSITSNPSK-CTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLK 74 (220)
T ss_dssp GGGTEEECSCTTT-CSEEECSSCCCBHHHHHHGGGCCEEECHHHHHHHHH
T ss_pred hhcceeeccCchh-hhhhhhhhHhhhcceeecCCCCCeEEEhHHHHhhhh
Confidence 4889999999875 7799998764 4888999999999999999988774
No 203
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=51.02 E-value=12 Score=38.32 Aligned_cols=43 Identities=23% Similarity=0.217 Sum_probs=31.3
Q ss_pred ccHHHHHH---HHHhCCCHHHHHhcC----HHHHhcCCCCCHHHHHHHHHH
Q psy11423 531 VGETTAKE---LANYFKNLECMFKAT----EEQLLNIPKIGSTTVKAFIKF 574 (655)
Q Consensus 531 IG~~~Ak~---L~~~fgsl~~l~~as----~eeL~~i~GIG~~~A~~I~~~ 574 (655)
++..+|+. +++. ++++.+...+ .++|.+++|||+++|+.|.-|
T Consensus 180 ~~~rKa~~i~~~A~~-g~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill~ 229 (295)
T 2jhn_A 180 LSRRKAELIVEIAKE-ENLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSI 229 (295)
T ss_dssp CCHHHHHHHHHHHTC-SSGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHC-CCHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHHH
Confidence 34555654 4445 6677665554 478999999999999999886
No 204
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=51.00 E-value=8.9 Score=39.83 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.1
Q ss_pred CCCCccHHHHHHHHHhCCCHHHHH
Q psy11423 527 GIRHVGETTAKELANYFKNLECMF 550 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~fgsl~~l~ 550 (655)
||||||+++|-+|++. ++++.+.
T Consensus 229 GvpGiG~ktA~kli~~-gsle~i~ 251 (326)
T 1a76_A 229 GVKGIGFKRAYELVRS-GVAKDVL 251 (326)
T ss_dssp TTTTCCHHHHHHHHHH-TCHHHHH
T ss_pred CCCCcCHHHHHHHHHc-CCHHHHH
Confidence 7889999999888888 9998876
No 205
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=50.81 E-value=9.3 Score=41.63 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=36.3
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHH
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILL 509 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~ 509 (655)
.-+|+|+|+++.++|-..| |.++.||..+. ..|... ||.+.+..|++
T Consensus 284 v~~l~GiG~~~~~~L~~lG-I~T~gdL~~~~-~~L~~~--fG~~~~~~l~~ 330 (459)
T 1t94_A 284 IRKVSGIGKVTEKMLKALG-IITCTELYQQR-ALLSLL--FSETSWHYFLH 330 (459)
T ss_dssp GGGCTTSCHHHHHHHHHTT-CCBHHHHHHTH-HHHHHH--SCHHHHHHHHH
T ss_pred HHhcCCcCHHHHHHHHHcC-CCcHHHHHhhH-HHHHHH--hChHhHHHHHH
Confidence 4479999999999995554 79999999874 556665 89877766654
No 206
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=49.56 E-value=8 Score=37.92 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=12.2
Q ss_pred hhhccccCCcHHHHHHHHHHH
Q psy11423 491 KNLLRLDRVSNKLANNILLAI 511 (655)
Q Consensus 491 ~~L~~l~GfG~Ksa~nll~~I 511 (655)
+.|..|||+|+|+|++|.-.+
T Consensus 26 ~~l~~LPGIG~KsA~RlA~hL 46 (212)
T 3vdp_A 26 EELSKLPGIGPKTAQRLAFFI 46 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHH
Confidence 345666666666666664443
No 207
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=49.45 E-value=20 Score=32.05 Aligned_cols=47 Identities=13% Similarity=0.254 Sum_probs=37.5
Q ss_pred CCCCeEecccccCccEEEecCCCCchHHHHHH---cCCeeeCHHHHHHHHh
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQKPGKKLEKAIK---LNIKILDEKNFVKIVK 647 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~~g~K~~kA~~---lgi~ii~e~~f~~~l~ 647 (655)
.+||++...++..++++|+++. ..++.++.. .+++|++.+-+.+-+.
T Consensus 65 ~~Gg~v~~~l~~~vTHvI~~~~-~~~~~~~~~~~~~~~~iV~~~Wv~dsi~ 114 (132)
T 1wf6_A 65 SGGGVRFNQLNEDVTHVIVGDY-DDELKQFWNKSAHRPHVVGAKWLLECFS 114 (132)
T ss_dssp HTTCEEESSCCSSCCEEEESSC-CSHHHHHHHHSCCCCCEEEHHHHHHHHH
T ss_pred HCCCEEeCcCCCCCeEEEECCc-hHHHHHHHHhhCCCCeEechHHHHHHHH
Confidence 7899999999999999999863 455555432 4799999999988774
No 208
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=48.80 E-value=19 Score=45.77 Aligned_cols=51 Identities=10% Similarity=0.193 Sum_probs=46.0
Q ss_pred hCCCCccHHHHHHHHHh-CCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHhc
Q psy11423 526 LGIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576 (655)
Q Consensus 526 lgIpgIG~~~Ak~L~~~-fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f~ 576 (655)
+.|||||..+|++|.+. +.|+..|..++.+++..+-++.+.....|.+|++
T Consensus 1560 ~qip~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~~ll~~~~~~~~~i~~~~~ 1611 (1724)
T 4f92_B 1560 KQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCN 1611 (1724)
T ss_dssp GGSTTCCHHHHHHHHHHTCCSHHHHHSSCHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHHCCChHHHHHHHHHHH
Confidence 47999999999999875 8899999999999999999999988888888765
No 209
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=48.80 E-value=3.4 Score=46.53 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHcCcccccCC---CCCCCeEecccccCccEEEecCCCC---chHHH-HHHcCCeeeCHHHHHHHH
Q psy11423 579 LHRLLISQLRDVGIYWLNNP---NTKGGKVVNFISKNTNYLVKGQKPG---KKLEK-AIKLNIKILDEKNFVKIV 646 (655)
Q Consensus 579 ~n~~li~~L~~~Gi~~~~~~---~~~G~~v~~sVsk~t~ylv~g~~~g---~K~~k-A~~lgi~ii~e~~f~~~l 646 (655)
..++++.+|...|++..... ..+|......|..|| |.+ .+..| .++|+ |+++|++..++..+...+
T Consensus 6 ~~~~~~~~l~~~g~~~~~a~~i~~~yg~~~~~~i~~nP-y~l-~~i~gigf~~aD~ia~~~g~~~~~~~R~~a~~ 78 (574)
T 3e1s_A 6 LERRLLAGLQGLGLTINQAQRAVKHFGADALDRLEKDL-FTL-TEVEGIGFLTADKLWQARGGALDDPRRLTAAA 78 (574)
T ss_dssp ---------------------------------------CGG-GTSSSCCHHHHHTTC-------CCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhCC-ccc-CCcCCCCHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 45667888888898865544 589999999999999 988 67666 88999 999999999998776543
No 210
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=48.78 E-value=3.7 Score=42.93 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=0.0
Q ss_pred cccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHH
Q psy11423 460 MNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQ 512 (655)
Q Consensus 460 l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~ 512 (655)
|.-.||++.++.+|-++|+ .|+.|+...+..+|..+.|+.+..++++++...
T Consensus 30 l~~~g~~~~~~~~l~~~g~-~t~~~~~~~~~~~l~~~~~is~~~~~~~~~~a~ 81 (343)
T 1v5w_A 30 LQKHGINVADIKKLKSVGI-CTIKGIQMTTRRALCNVKGLSEAKVDKIKEAAN 81 (343)
T ss_dssp -----------------------------------------------------
T ss_pred HhhCCCCHHHHHHHHHcCC-CcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHH
Confidence 3344999999999998885 899999999999999999999999999888764
No 211
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=48.74 E-value=23 Score=29.49 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=43.0
Q ss_pred CC-CCccHHHHHHHHHh-CCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHh
Q psy11423 527 GI-RHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575 (655)
Q Consensus 527 gI-pgIG~~~Ak~L~~~-fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f 575 (655)
+. ||+-+...++|.++ ..+...+..+++++|.++-|++-+.+.+|+..+
T Consensus 7 ~~~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l 57 (83)
T 2kz3_A 7 GLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVL 57 (83)
T ss_dssp TSSTTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 55 88889999988874 889999999999999999999998888887765
No 212
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=47.53 E-value=20 Score=37.23 Aligned_cols=52 Identities=10% Similarity=0.199 Sum_probs=42.4
Q ss_pred hCCCCccHHHHHHHHHh-CCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHhcC
Q psy11423 526 LGIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQ 577 (655)
Q Consensus 526 lgIpgIG~~~Ak~L~~~-fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f~~ 577 (655)
+.+||||+..++++.+. +.+++.|..++.+++..+-|+.+...+.+.++++.
T Consensus 164 ~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~ 216 (339)
T 2q0z_X 164 KQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNR 216 (339)
T ss_dssp GGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTT
T ss_pred ecCCCCCHHHHHHHHhcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 48999999999999764 57999999999988887777777777777776654
No 213
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=47.36 E-value=14 Score=28.67 Aligned_cols=27 Identities=11% Similarity=-0.025 Sum_probs=19.1
Q ss_pred ccCCCCCCCCCC-cceeecCceeEEecC
Q psy11423 412 FKIPNICPICNS-KIIYIESNLIARCSG 438 (655)
Q Consensus 412 ~~~P~~CP~C~~-~l~~~~~~~~~~C~n 438 (655)
+.-...||.|++ .|+.......+.|.+
T Consensus 8 ll~~~~Cp~C~~~~lv~D~~~ge~vC~~ 35 (58)
T 1dl6_A 8 ALPRVTCPNHPDAILVEDYRAGDMICPE 35 (58)
T ss_dssp CCSCCSBTTBSSSCCEECSSSCCEECTT
T ss_pred ccccccCcCCCCCceeEeCCCCeEEeCC
Confidence 333447999998 676655556789977
No 214
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=47.04 E-value=7.8 Score=32.41 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=18.9
Q ss_pred CCCCCCCCCcceeecCceeEEecC
Q psy11423 415 PNICPICNSKIIYIESNLIARCSG 438 (655)
Q Consensus 415 P~~CP~C~~~l~~~~~~~~~~C~n 438 (655)
.-.||.||..++...+...|.|..
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~ 50 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSY 50 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETT
T ss_pred cCcCCCCCCcceeccCCCeEECCC
Confidence 347999999888766666889976
No 215
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=46.83 E-value=31 Score=31.33 Aligned_cols=48 Identities=17% Similarity=0.304 Sum_probs=40.5
Q ss_pred CCCCeEecccccCccEEEecCCCC--------chHHHHHHcCCeeeCHHHHHHHHh
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQKPG--------KKLEKAIKLNIKILDEKNFVKIVK 647 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~~g--------~K~~kA~~lgi~ii~e~~f~~~l~ 647 (655)
..|++|..=.+.+.+.+|.-...- -=+.+|+++|++|++-+-+.+||.
T Consensus 41 ~LGa~I~~FFd~~VTiiITrR~~~~~~~~p~~DIL~rAr~~~mKIWs~EKl~RfL~ 96 (134)
T 3oq4_A 41 TLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKAARFLK 96 (134)
T ss_dssp HTTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEEEEHHHHHHHHH
T ss_pred HcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCeeeeHHHHHHHHH
Confidence 788999999999999999866432 237899999999999999999885
No 216
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=46.51 E-value=14 Score=30.97 Aligned_cols=24 Identities=4% Similarity=0.127 Sum_probs=20.7
Q ss_pred CHHHHhcCCCCCHHHHHHHHHHhc
Q psy11423 553 TEEQLLNIPKIGSTTVKAFIKFIN 576 (655)
Q Consensus 553 s~eeL~~i~GIG~~~A~~I~~~f~ 576 (655)
+..++..++|||+++++.|-+++.
T Consensus 56 s~~e~~~L~giG~ki~~~L~e~L~ 79 (87)
T 2kp7_A 56 SGKEAKILQHFGDRLCRMLDEKLK 79 (87)
T ss_dssp SHHHHHTCTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHhhcccHHHHHHHHHHHH
Confidence 578899999999999999988764
No 217
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=45.50 E-value=11 Score=44.15 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=31.0
Q ss_pred HHhcCChhhhccccCCcHHHHHHHHHHHHHhcc-cchhHHHHHhCCCCccHHHHHHHHHh
Q psy11423 484 DLYKINFKNLLRLDRVSNKLANNILLAIQKSKL-TTFSRFIYALGIRHVGETTAKELANY 542 (655)
Q Consensus 484 DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~sk~-~~l~r~L~algIpgIG~~~Ak~L~~~ 542 (655)
||-+.+.+.|..++|+|++.|++|++..+.... .+...+ +.++|+|+++-..+...
T Consensus 501 diNtAs~~~L~~v~GiG~~~A~~Iv~yR~~~G~f~sr~~L---~~V~giG~k~~ekl~~F 557 (785)
T 3bzc_A 501 DVNTASAALLARISGLNSTLAQNIVAHRDANGAFRTRDEL---KKVSRLGEKTFEQAAGF 557 (785)
T ss_dssp ETTTCCHHHHHTSTTCCHHHHHHHHHHHHHHCCCSSGGGG---GGSTTCCHHHHHHHGGG
T ss_pred ccCcCCHHHHhhcCCCCHHHHHHHHHHHHhcCCCCCHHHH---HhcCCCCHHHHHHhhhe
Confidence 455556666777777777777777666543211 111222 25666776666555443
No 218
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=45.45 E-value=15 Score=34.85 Aligned_cols=60 Identities=17% Similarity=0.325 Sum_probs=36.0
Q ss_pred CCCCCCEEEEEecCcccceeecccccCCCCCCccccCCCCCCCCCCcceeecCceeEEecCCCcCCHHHHHhhc
Q psy11423 378 NIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGL 451 (655)
Q Consensus 378 ~i~iGd~V~v~raGdVIP~I~~vv~~~r~~~~~~~~~P~~CP~C~~~l~~~~~~~~~~C~n~~~~C~~q~~~~i 451 (655)
-+++||.|.+.=-. -.+...-|..+-. .+-..|+.||.+++... ..+.|++ |-..-.+++
T Consensus 111 ~~~~GD~V~akVi~------~~i~LS~k~~~lG--vv~a~~~~~g~~m~~~~--~~~~cp~----~g~~e~RKv 170 (179)
T 3m7n_A 111 AVGYLDILKARVIG------DNLRLSTKEEEMG--VLRALCSNCKTEMVREG--DILKCPE----CGRVEKRKI 170 (179)
T ss_dssp TCCTTCEEEEEEEE------TTTEEECCSTTCE--EEECBCTTTCCBCEECS--SSEECSS----SCCEECCCB
T ss_pred cCCCCCEEEEEEEC------CeEEEEEecCCCC--EEEecccccCCceEECC--CEEECCC----CCCEEEEec
Confidence 47899999865333 1222222222222 24568999999998764 6899988 644333444
No 219
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=44.80 E-value=11 Score=44.04 Aligned_cols=103 Identities=14% Similarity=0.188 Sum_probs=58.6
Q ss_pred ccCCCCHHHHHHHHHc----CCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHHHhcccchhHHHHHhCCCCccHHHH
Q psy11423 461 NIIGLGKKMIEKLVNA----NIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTA 536 (655)
Q Consensus 461 ~I~GLG~k~i~~L~~~----g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~sk~~~l~r~L~algIpgIG~~~A 536 (655)
-|+||||.+++.+++. |...+. ++|..++|+|+|..+++..-+.-.- ....|.+-.|.-=--..|
T Consensus 512 ~v~GiG~~~A~~Iv~yR~~~G~f~sr--------~~L~~V~giG~k~~ekl~~FL~i~G---~~~pLD~t~VHPEsY~~a 580 (785)
T 3bzc_A 512 RISGLNSTLAQNIVAHRDANGAFRTR--------DELKKVSRLGEKTFEQAAGFLRVMN---GDNPLDASAVHPETYPLV 580 (785)
T ss_dssp TSTTCCHHHHHHHHHHHHHHCCCSSG--------GGGGGSTTCCHHHHHHHGGGEECTT---SSCGGGGSSCCGGGHHHH
T ss_pred hcCCCCHHHHHHHHHHHHhcCCCCCH--------HHHHhcCCCCHHHHHHhhheEEECC---cccccccCcCCHHHHHHH
Confidence 4889999999888763 665554 5566789999998887665443211 011122223311122356
Q ss_pred HHHHHhCC-CHHHHH-------hcCHHHHhcCCCCCHHHHHHHHHHh
Q psy11423 537 KELANYFK-NLECMF-------KATEEQLLNIPKIGSTTVKAFIKFI 575 (655)
Q Consensus 537 k~L~~~fg-sl~~l~-------~as~eeL~~i~GIG~~~A~~I~~~f 575 (655)
++|++..+ +.+.|. ..+.+++.. ..+|..+...|+.-+
T Consensus 581 ~kil~~~g~~~e~li~~~~~Lrsl~~a~Ya~-~hfGl~tl~rIi~eL 626 (785)
T 3bzc_A 581 QRIAADTERDIRSLIGDSAFLKRLDPKKFTD-ETFGLPTVTDILKEL 626 (785)
T ss_dssp HHHHHHHTCCHHHHTTCHHHHHHSCGGGTCC-SSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHhhhHHHHHhcCHHHHhh-hcCCcHHHHHHHHHH
Confidence 67766544 344443 333444442 478877766666544
No 220
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=44.70 E-value=15 Score=40.80 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=34.6
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHH
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNIL 508 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll 508 (655)
.=+|+|+|+++.++|-..| |.++.||+.+. ..|..+ ||......++
T Consensus 340 V~kl~GIG~~t~~~L~~lG-I~TigDL~~~~-~~L~~~--fG~~~~~~l~ 385 (517)
T 3pzp_A 340 IRKVSGIGKVTEKMLKALG-IITCTELYQQR-ALLSLL--FSETSWHYFL 385 (517)
T ss_dssp GGGSTTCCHHHHHHHHHTT-CCBHHHHHHHH-HHHHHH--SCHHHHHHHH
T ss_pred hhhhccccHHHHHHHHHhC-CCcHHHHHhhH-HHHHHH--hChHHHHHHH
Confidence 4469999999999987665 79999999873 445554 8877665554
No 221
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=44.12 E-value=6.1 Score=34.31 Aligned_cols=12 Identities=25% Similarity=0.971 Sum_probs=9.4
Q ss_pred CCCCCCCCCcce
Q psy11423 415 PNICPICNSKII 426 (655)
Q Consensus 415 P~~CP~C~~~l~ 426 (655)
...||.||+++.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 346999999775
No 222
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=44.12 E-value=11 Score=38.29 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=21.2
Q ss_pred CCCCCCCCCCcceeecCceeEEecC
Q psy11423 414 IPNICPICNSKIIYIESNLIARCSG 438 (655)
Q Consensus 414 ~P~~CP~C~~~l~~~~~~~~~~C~n 438 (655)
-..+||.||+++...+++...+|++
T Consensus 106 ~~~fC~~CG~~~~~~~~~~~~~C~~ 130 (269)
T 1vk6_A 106 SHKYCGYCGHEMYPSKTEWAMLCSH 130 (269)
T ss_dssp TTSBCTTTCCBEEECSSSSCEEESS
T ss_pred cCCccccCCCcCccCCCceeeeCCC
Confidence 3579999999998877888899966
No 223
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=44.01 E-value=24 Score=33.85 Aligned_cols=48 Identities=10% Similarity=0.069 Sum_probs=39.8
Q ss_pred CCCC-eEecccccCccEEEecCCC-CchHHHHHHcCCeeeCHHHHHHHHh
Q psy11423 600 TKGG-KVVNFISKNTNYLVKGQKP-GKKLEKAIKLNIKILDEKNFVKIVK 647 (655)
Q Consensus 600 ~~G~-~v~~sVsk~t~ylv~g~~~-g~K~~kA~~lgi~ii~e~~f~~~l~ 647 (655)
.+|| .+.+.++.+++.||++... +.|...|...|+.|++.+-+.+-++
T Consensus 33 ~lgG~~~~~~~~~~~THlv~~~~~rT~K~l~ai~~g~~Iv~~~Wv~~~~~ 82 (199)
T 3u3z_A 33 KLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLE 82 (199)
T ss_dssp HHCSCEEESSCCTTEEEEEESSCCCBHHHHHHHHTTCEEEETHHHHHHHH
T ss_pred HcCCcEEecCCCCCCeEEEECCCCCCHHHHHHHHCCCcEEeHHHHHHHhh
Confidence 4544 6778999999999998853 4889999999999999998887663
No 224
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=43.96 E-value=9.8 Score=37.64 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=12.1
Q ss_pred hhhccccCCcHHHHHHHHHHH
Q psy11423 491 KNLLRLDRVSNKLANNILLAI 511 (655)
Q Consensus 491 ~~L~~l~GfG~Ksa~nll~~I 511 (655)
+.|..|||+|+|||++|.=.+
T Consensus 12 ~~l~~LPGIG~KSA~RlA~hL 32 (228)
T 1vdd_A 12 RELSRLPGIGPKSAQRLAFHL 32 (228)
T ss_dssp HHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHhHCCCCCHHHHHHHHHHH
Confidence 345666666666666664443
No 225
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=42.41 E-value=39 Score=35.23 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=48.2
Q ss_pred CCcH-HHHHHHHHHHHHhcc------cchhHHHHHh---CCCCccHHHHHHHHHh-CCCHHHHHhcCHHHHhcCCCCCHH
Q psy11423 498 RVSN-KLANNILLAIQKSKL------TTFSRFIYAL---GIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGST 566 (655)
Q Consensus 498 GfG~-Ksa~nll~~I~~sk~------~~l~r~L~al---gIpgIG~~~Ak~L~~~-fgsl~~l~~as~eeL~~i~GIG~~ 566 (655)
|+|. |...|+...+.+-.. .....+|..+ .++|||++++++|.+. ..++..|..++.+.|.+. +|.+
T Consensus 143 GIa~nk~lAKlAs~~~Kp~g~~~i~~~~~~~~L~~lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~--fG~~ 220 (356)
T 4dez_A 143 GISDNKQRAKVATGFAKPAGIYVLTEANWMTVMGDRPPDALWGVGPKTTKKLAAMGITTVADLAVTDPSVLTTA--FGPS 220 (356)
T ss_dssp EEESSHHHHHHHHHHHCSSCEEECCTTTHHHHHTTSCGGGSTTCCHHHHHHHHHTTCCSHHHHHTSCHHHHHHH--HCHH
T ss_pred chhccHHHHHHHHHHhhhcCcccccchhhhhhhhcCcHHHHcCCchhHHHHHHHcCCCeecccccCCHHHHHHH--hCCh
Confidence 4443 555666655543211 1233566555 5788998888888653 557888888888887765 6666
Q ss_pred HHHHHHHHh
Q psy11423 567 TVKAFIKFI 575 (655)
Q Consensus 567 ~A~~I~~~f 575 (655)
.+..++...
T Consensus 221 ~g~~l~~~a 229 (356)
T 4dez_A 221 TGLWLLLLA 229 (356)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
No 226
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=41.84 E-value=11 Score=33.11 Aligned_cols=27 Identities=30% Similarity=0.640 Sum_probs=20.4
Q ss_pred HHhcCCCCCCEEEEEecCcccceeecccc
Q psy11423 374 IYRKNIQIGDTVVVHRSGNVIPKITSSIL 402 (655)
Q Consensus 374 i~~~~i~iGd~V~v~raGdVIP~I~~vv~ 402 (655)
|.-.+|.+||.|.| ++||.||- .+++.
T Consensus 25 i~~~~l~~GDiv~v-~~G~~iPa-Dg~v~ 51 (113)
T 2hc8_A 25 VPVEEVAVGDIVIV-RPGEKIPV-DGVVV 51 (113)
T ss_dssp EEGGGCCTTCEEEE-CTTCBCCS-EEEEE
T ss_pred EEHHHCCCCCEEEE-CCCCEEee-eEEEE
Confidence 44468999999988 78999995 34433
No 227
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=40.81 E-value=3.9 Score=37.77 Aligned_cols=40 Identities=28% Similarity=0.391 Sum_probs=29.0
Q ss_pred EEECCEEEEEeeCCCHHHHHhcCCCCCCEEEEEecCcccceeecccc
Q psy11423 356 VLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSIL 402 (655)
Q Consensus 356 V~l~G~tVsratLhN~~~i~~~~i~iGd~V~v~raGdVIP~I~~vv~ 402 (655)
|..++++..-+ |.+.+++++|++||.|.|. -+|++.-+|.
T Consensus 44 VrFdDs~~~~V---~~~~vk~LeLRiGD~VKVd----~vpK~~hiVv 83 (153)
T 2fhd_A 44 VQFDDATMSTV---NSNQIKRFFLKKGDVVQST----RLGKIKHTVV 83 (153)
T ss_dssp EEETTSCEEEE---ETTSEEESCCCTTCEEEET----TSTTCCEEEE
T ss_pred EEEcCCCCCcc---ChhhceeeeeecCCEEEEC----CCCCccEEEE
Confidence 44455544422 5778999999999999998 5677776664
No 228
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=40.81 E-value=19 Score=36.97 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=30.9
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHhc-CChhhhccccCCcHHHHHHHHHHHHH
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYK-INFKNLLRLDRVSNKLANNILLAIQK 513 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~-L~~~~L~~l~GfG~Ksa~nll~~I~~ 513 (655)
.=+|+|+||||+.+|.++- .|++.||+ +.. +. ..|..++|.++.+.
T Consensus 205 iPGVpGIG~KTA~kLL~~~--gsle~i~~~~~~-----~~--~~~~~~~L~~~~~~ 251 (290)
T 1exn_A 205 IRGVEGIGAKRGYNIIREF--GNVLDIIDQLPL-----PG--KQKYIQNLNASEEL 251 (290)
T ss_dssp BCCCTTCCHHHHHHHHHHH--CSHHHHHHHCSC-----SC--CCHHHHHHHTCHHH
T ss_pred CCCCCcCCHhHHHHHHHHc--CCHHHHHHHHHH-----hc--cHHHHHHHHHhHHH
Confidence 3468999999999999863 37778875 432 20 22666777665554
No 229
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=40.21 E-value=18 Score=41.25 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=41.7
Q ss_pred HHHhCCCCccHHHHHHHHHh-CCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHhc
Q psy11423 523 IYALGIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFIN 576 (655)
Q Consensus 523 L~algIpgIG~~~Ak~L~~~-fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f~ 576 (655)
+.-+.|||||..+|++|.+. +.|+..|..++ +++.++-| ++.+++|.+..+
T Consensus 632 ~~L~qlp~v~~~~ar~l~~~g~~s~~~l~~~~-~~l~~ll~--~~~~~~i~~~~~ 683 (702)
T 2p6r_A 632 LELVRIRHIGRVRARKLYNAGIRNAEDIVRHR-EKVASLIG--RGIAERVVEGIS 683 (702)
T ss_dssp HHHHTSTTCCHHHHHHHHTTTCCSHHHHHHTH-HHHHHHHC--HHHHHHHHHHHH
T ss_pred HhhhcCCCCCHHHHHHHHHcCCCCHHHHHhhh-HHHHHHhC--hhHHHHHHHhcC
Confidence 34459999999999999875 88999999999 88887743 788888877664
No 230
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=40.11 E-value=9 Score=36.78 Aligned_cols=11 Identities=36% Similarity=1.186 Sum_probs=9.5
Q ss_pred CCCCCCCCCCc
Q psy11423 414 IPNICPICNSK 424 (655)
Q Consensus 414 ~P~~CP~C~~~ 424 (655)
+|+.||.||.+
T Consensus 170 ~p~~CP~C~~~ 180 (191)
T 1lko_A 170 APELCPACAHP 180 (191)
T ss_dssp CCSBCTTTCCB
T ss_pred CCCCCCCCcCC
Confidence 67899999985
No 231
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=39.54 E-value=14 Score=37.50 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=18.1
Q ss_pred CCCCCCCcceee--cCceeEEecC
Q psy11423 417 ICPICNSKIIYI--ESNLIARCSG 438 (655)
Q Consensus 417 ~CP~C~~~l~~~--~~~~~~~C~n 438 (655)
-||.||+++.+. .+...+||++
T Consensus 247 pC~~CG~~I~~~~~~gR~t~~CP~ 270 (273)
T 3u6p_A 247 PCKRCGTPIEKTVVAGRGTHYCPR 270 (273)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTT
T ss_pred CCCCCCCeEEEEEECCCCeEECCC
Confidence 599999999853 4678999977
No 232
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=38.86 E-value=27 Score=30.02 Aligned_cols=34 Identities=18% Similarity=0.378 Sum_probs=29.5
Q ss_pred hCCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHh
Q psy11423 542 YFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575 (655)
Q Consensus 542 ~fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f 575 (655)
.+.++..|...+.++|.+++++|++..+.|.+.+
T Consensus 43 gI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L 76 (98)
T 1coo_A 43 AIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVL 76 (98)
T ss_dssp TCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred CCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHHHH
Confidence 3668999999999999999999999988886654
No 233
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=38.49 E-value=38 Score=36.17 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=41.7
Q ss_pred HhCCCCccHHHHHHHHHh-CCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHH
Q psy11423 525 ALGIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKF 574 (655)
Q Consensus 525 algIpgIG~~~Ak~L~~~-fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~ 574 (655)
.|.=-||++...++|.+. |.+++.+..++..+|.++.|+++..+..|.+.
T Consensus 85 ~l~~~gi~~~~~~~L~~ag~~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~ 135 (400)
T 3lda_A 85 KLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNE 135 (400)
T ss_dssp GGCCTTCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHH
Confidence 333356789899888764 89999999999999999999999888888764
No 234
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=37.95 E-value=11 Score=35.62 Aligned_cols=11 Identities=36% Similarity=1.259 Sum_probs=9.2
Q ss_pred CCCCCCCCCCc
Q psy11423 414 IPNICPICNSK 424 (655)
Q Consensus 414 ~P~~CP~C~~~ 424 (655)
.|..||.||.+
T Consensus 152 ~p~~CP~Cg~~ 162 (170)
T 3pwf_A 152 APEYCPVCGAP 162 (170)
T ss_dssp CCSBCTTTCCB
T ss_pred CCCCCCCCCCC
Confidence 57899999975
No 235
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=37.77 E-value=13 Score=36.32 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=21.5
Q ss_pred ccccCCCCHHHHHHHHHcCCCCChHHHhcCChhhhc
Q psy11423 459 AMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~ 494 (655)
.-+++|+|+++.++|-..| |+|+.||..+....|.
T Consensus 186 v~~l~giG~~~~~~L~~~G-i~TigdL~~~~~~~L~ 220 (221)
T 1im4_A 186 IDEIPGIGSVLARRLNELG-IQKLRDILSKNYNELE 220 (221)
T ss_dssp GGGSTTCCHHHHHHHHHTT-CCBTTC----------
T ss_pred cccccCCCHHHHHHHHHcC-CCcHHHHHCCCHHHhh
Confidence 4478999999999997766 7999999988765553
No 236
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=37.71 E-value=37 Score=33.33 Aligned_cols=33 Identities=9% Similarity=0.250 Sum_probs=20.6
Q ss_pred cCCCCChHHHhcCC----hhhhccccCCcHHHHHHHH
Q psy11423 476 ANIVVTAVDLYKIN----FKNLLRLDRVSNKLANNIL 508 (655)
Q Consensus 476 ~g~I~~i~DL~~L~----~~~L~~l~GfG~Ksa~nll 508 (655)
.|-+.+...|..++ .+.|.+|+|+|+++|+-++
T Consensus 120 ~g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~il 156 (228)
T 3s6i_A 120 SGLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLL 156 (228)
T ss_dssp HTSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred cCCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHH
Confidence 35555555555555 3457777777777776554
No 237
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=37.65 E-value=16 Score=37.02 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=17.9
Q ss_pred CCCCCCCcceee--cCceeEEecC
Q psy11423 417 ICPICNSKIIYI--ESNLIARCSG 438 (655)
Q Consensus 417 ~CP~C~~~l~~~--~~~~~~~C~n 438 (655)
-||.||+++.+. .+...+||++
T Consensus 242 pC~~CG~~I~~~~~~gR~t~~CP~ 265 (268)
T 1k82_A 242 PCRVCGTPIVATKHAQRATFYCRQ 265 (268)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTT
T ss_pred CCCCCCCEeeEEEECCCceEECCC
Confidence 499999998754 4668899977
No 238
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=37.47 E-value=16 Score=37.03 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=17.9
Q ss_pred CCCCCCCcceee--cCceeEEecC
Q psy11423 417 ICPICNSKIIYI--ESNLIARCSG 438 (655)
Q Consensus 417 ~CP~C~~~l~~~--~~~~~~~C~n 438 (655)
-||.||+++.+. .+...+||++
T Consensus 244 pC~~CG~~I~~~~~~gR~t~~CP~ 267 (271)
T 2xzf_A 244 KCSRCGAEIQKIKVAGRGTHFCPV 267 (271)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTT
T ss_pred CCCCCCCEeeEEEECCCceEECCC
Confidence 499999998754 4668899987
No 239
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=37.39 E-value=13 Score=32.62 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=20.6
Q ss_pred CCCCCCCCCcceeecC----ceeEEecCCCcCCHHH
Q psy11423 415 PNICPICNSKIIYIES----NLIARCSGSWIECIAQ 446 (655)
Q Consensus 415 P~~CP~C~~~l~~~~~----~~~~~C~n~~~~C~~q 446 (655)
..+||.||+.|...++ ...+.|.+ |+-+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~----C~y~ 35 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRN----CDYS 35 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSS----SCCE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCC----CCCe
Confidence 4689999999986543 23689977 8753
No 240
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=37.22 E-value=16 Score=36.78 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=17.8
Q ss_pred CCCCCCCcceee--cCceeEEecC
Q psy11423 417 ICPICNSKIIYI--ESNLIARCSG 438 (655)
Q Consensus 417 ~CP~C~~~l~~~--~~~~~~~C~n 438 (655)
-||.||+++.+. .+...+||++
T Consensus 236 pC~~CG~~I~~~~~~gR~t~~CP~ 259 (262)
T 1k3x_A 236 PCERCGSIIEKTTLSSRPFYWCPG 259 (262)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTT
T ss_pred CCCCCCCEeEEEEECCCCeEECCC
Confidence 499999998754 4678899977
No 241
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=36.64 E-value=19 Score=31.00 Aligned_cols=22 Identities=18% Similarity=0.564 Sum_probs=10.1
Q ss_pred CCCCCCCcceeec--CceeEEecC
Q psy11423 417 ICPICNSKIIYIE--SNLIARCSG 438 (655)
Q Consensus 417 ~CP~C~~~l~~~~--~~~~~~C~n 438 (655)
.||-|+.+|++-. |-+++||.+
T Consensus 63 ~CPdC~q~LevLkACGAvdYFC~~ 86 (101)
T 2jne_A 63 LCPDCHQPLQVLKACGAVDYFCQH 86 (101)
T ss_dssp ECTTTCSBCEEEEETTEEEEEETT
T ss_pred cCcchhhHHHHHHHhcCcchhhcc
Confidence 4555555544321 335555544
No 242
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=36.48 E-value=18 Score=40.70 Aligned_cols=39 Identities=18% Similarity=0.496 Sum_probs=26.4
Q ss_pred EEEecCcccceeeccccc-CC--C----------CCCccccCCCCCCCCCCc
Q psy11423 386 VVHRSGNVIPKITSSILS-LR--P----------NDSKIFKIPNICPICNSK 424 (655)
Q Consensus 386 ~v~raGdVIP~I~~vv~~-~r--~----------~~~~~~~~P~~CP~C~~~ 424 (655)
.|.|++.|.|++....-. .+ . .....+..|..||.|++.
T Consensus 120 ~V~r~s~v~~~~~~~~~~C~~~~C~~~~~~~~~~~~~~~~~~p~~C~~C~~~ 171 (595)
T 3f9v_A 120 ILVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKP 171 (595)
T ss_dssp EEEEECCCEEEEEECCCEEESSSCCCBCCSSCSSCCCSSCCCCSSCTTTCCC
T ss_pred EEEEecCEEEEEEEEEEEecCCCCCCEEEEEeccccCCcccCCCcCCCCCCC
Confidence 467999999998876431 11 1 122356789999999983
No 243
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=36.03 E-value=17 Score=36.86 Aligned_cols=22 Identities=18% Similarity=0.387 Sum_probs=17.9
Q ss_pred CCCCCCCcceee--cCceeEEecC
Q psy11423 417 ICPICNSKIIYI--ESNLIARCSG 438 (655)
Q Consensus 417 ~CP~C~~~l~~~--~~~~~~~C~n 438 (655)
-||.||+++.+. .+...+||++
T Consensus 237 pC~~CG~~I~~~~~~gR~t~~CP~ 260 (266)
T 1ee8_A 237 PCPACGRPVERRVVAGRGTHFCPT 260 (266)
T ss_dssp BCTTTCCBCEEEESSSCEEEECTT
T ss_pred CCCCCCCEeeEEEECCCceEECCC
Confidence 499999998854 4568899987
No 244
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=36.01 E-value=19 Score=35.57 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=14.4
Q ss_pred hHHHHHh-CCCCccHHHHHHHHHhC
Q psy11423 520 SRFIYAL-GIRHVGETTAKELANYF 543 (655)
Q Consensus 520 ~r~L~al-gIpgIG~~~Ak~L~~~f 543 (655)
.+++.+| .+||||+++|++|+-+.
T Consensus 8 ~~LI~~l~~LPGIG~KSA~RlA~hL 32 (228)
T 1vdd_A 8 VSLIRELSRLPGIGPKSAQRLAFHL 32 (228)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhHCCCCCHHHHHHHHHHH
Confidence 4444444 46777777777666553
No 245
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=35.84 E-value=12 Score=34.79 Aligned_cols=13 Identities=46% Similarity=1.053 Sum_probs=10.4
Q ss_pred CCCCCCCCcceee
Q psy11423 416 NICPICNSKIIYI 428 (655)
Q Consensus 416 ~~CP~C~~~l~~~ 428 (655)
..||.||+++.+.
T Consensus 149 ~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 149 GVCPDCGSKVKLI 161 (165)
T ss_dssp GBCTTTCCBEEEC
T ss_pred CcCCCCCCcceeC
Confidence 3899999997654
No 246
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=35.15 E-value=42 Score=32.81 Aligned_cols=62 Identities=15% Similarity=0.026 Sum_probs=36.3
Q ss_pred HHHhcCChhhhccc---cC--CcHHHHHHHHHHHH--Hh----ccc-chhHHHHH-h-CCCCccHHHHHHHHHhCC
Q psy11423 483 VDLYKINFKNLLRL---DR--VSNKLANNILLAIQ--KS----KLT-TFSRFIYA-L-GIRHVGETTAKELANYFK 544 (655)
Q Consensus 483 ~DL~~L~~~~L~~l---~G--fG~Ksa~nll~~I~--~s----k~~-~l~r~L~a-l-gIpgIG~~~Ak~L~~~fg 544 (655)
.+|..++.++|..+ -| |-..+|.+|.+..+ .. ... +....... + .+||||+++|..++...+
T Consensus 71 ~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~~~~l~~~~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~g 146 (214)
T 3fhf_A 71 DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNVG 146 (214)
T ss_dssp THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGGGCCHHHHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHhcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 34666666665432 26 77777887776544 11 111 22333333 3 699999999988776544
No 247
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=34.78 E-value=48 Score=32.70 Aligned_cols=45 Identities=11% Similarity=0.178 Sum_probs=27.9
Q ss_pred CCCHHHHHHH------HHcCCCCChHHHhcCC----hhhhccccCCcHHHHHHHH
Q psy11423 464 GLGKKMIEKL------VNANIVVTAVDLYKIN----FKNLLRLDRVSNKLANNIL 508 (655)
Q Consensus 464 GLG~k~i~~L------~~~g~I~~i~DL~~L~----~~~L~~l~GfG~Ksa~nll 508 (655)
|++..++..| +.+|.+.+...|..+. .+.|.+|+|+|+++|+-++
T Consensus 113 Gl~~~Ka~~l~~~A~~~~~g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~~il 167 (232)
T 4b21_A 113 GFSKLKSQEIHIVAEAALNKQIPSKSEIEKMSEEELMESLSKIKGVKRWTIEMYS 167 (232)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHHHHH
Confidence 6665433333 2345555666666665 3568888888888887654
No 248
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=34.65 E-value=41 Score=33.60 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=29.4
Q ss_pred cCccEEEecCC-CCchHHHHHHcCCeeeCHHHHHHHHhc
Q psy11423 611 KNTNYLVKGQK-PGKKLEKAIKLNIKILDEKNFVKIVKG 648 (655)
Q Consensus 611 k~t~ylv~g~~-~g~K~~kA~~lgi~ii~e~~f~~~l~~ 648 (655)
..++++|+... +..+.+.|++.|++|++.+-+.+-+..
T Consensus 202 ~~~~viv~d~~~~~~~~~~a~~~~i~iVs~EWv~~sI~~ 240 (259)
T 1kzy_C 202 GVFDVVVTDPSCPASVLKCAEALQLPVVSQEWVIQCLIV 240 (259)
T ss_dssp GGCSEEEECTTCCHHHHHHHHHHTCCEECHHHHHHHHHH
T ss_pred CCCeEEEECCCChHHHHHHHHhcCCCEecHHHHHHHHHh
Confidence 45778888543 336666799999999999999987754
No 249
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=34.42 E-value=48 Score=32.59 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=39.7
Q ss_pred CCCCeEec--ccccCccEEEecCCC-CchHHHHHHcCCeeeCHHHHHHHHh
Q psy11423 600 TKGGKVVN--FISKNTNYLVKGQKP-GKKLEKAIKLNIKILDEKNFVKIVK 647 (655)
Q Consensus 600 ~~G~~v~~--sVsk~t~ylv~g~~~-g~K~~kA~~lgi~ii~e~~f~~~l~ 647 (655)
.+||.+.. .++.+++.||++... +-|.-.|-..|..|++.+-+.+-++
T Consensus 31 ~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~aia~G~wIvs~~wl~~s~~ 81 (235)
T 3al2_A 31 KLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRT 81 (235)
T ss_dssp HTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHHHTTCEEECTHHHHHHHH
T ss_pred HcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHHHcCCcCccHHHHHHHHH
Confidence 67888865 588899999998864 5798889999999999988877653
No 250
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=34.36 E-value=19 Score=32.05 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=22.0
Q ss_pred CCCCCCCCCCcceeec----CceeEEecCCCcCCHHHH
Q psy11423 414 IPNICPICNSKIIYIE----SNLIARCSGSWIECIAQR 447 (655)
Q Consensus 414 ~P~~CP~C~~~l~~~~----~~~~~~C~n~~~~C~~q~ 447 (655)
...+||.||+-|...+ +...+.|.+ |+.+.
T Consensus 3 ~~~FCp~CgnlL~~~~~~~~~~~~~~C~~----C~y~~ 36 (122)
T 1twf_I 3 TFRFCRDCNNMLYPREDKENNRLLFECRT----CSYVE 36 (122)
T ss_dssp CCCBCSSSCCBCEEEEETTTTEEEEECSS----SSCEE
T ss_pred CCCcccccCccCcccccCcCCCCEEECCc----CCCee
Confidence 3578999999988553 346789966 87544
No 251
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=34.20 E-value=1.1e+02 Score=26.49 Aligned_cols=52 Identities=13% Similarity=0.249 Sum_probs=38.0
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHHhhcCCCCC--CChHHHHHHHHHHHHHHHh
Q psy11423 7 KKINFSKLSFRVTELKKELHRHNIAYYLYDNPI--ISDNKYDQLLFELKKIEEK 58 (655)
Q Consensus 7 ~~~~~~~~~~~~~~L~~~l~~~~~~Yy~~~~p~--isD~~YD~L~~~L~~le~~ 58 (655)
+++|++++.+-+.++++++.+.+.-=-..+.|. -++..-|.|..+|.+|+.+
T Consensus 1 ~~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e 54 (104)
T 3um3_B 1 DNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQE 54 (104)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHH
Confidence 467888887778888888888877654556653 1566678888888888765
No 252
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=33.95 E-value=13 Score=39.78 Aligned_cols=15 Identities=33% Similarity=0.352 Sum_probs=13.3
Q ss_pred CCCCEEEEEecCccc
Q psy11423 380 QIGDTVVVHRSGNVI 394 (655)
Q Consensus 380 ~iGd~V~v~raGdVI 394 (655)
+|||||+|+.++|-.
T Consensus 254 GIGDTIRVSLT~dP~ 268 (406)
T 4g9p_A 254 GIGDTIRVSLTPSPK 268 (406)
T ss_dssp TCCSEEECCBCCCTT
T ss_pred cCchhEEeeccCCCC
Confidence 689999999999865
No 253
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=33.30 E-value=46 Score=32.56 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=17.5
Q ss_pred HHHHhcCCCCCHHHHHHHHHHh
Q psy11423 554 EEQLLNIPKIGSTTVKAFIKFI 575 (655)
Q Consensus 554 ~eeL~~i~GIG~~~A~~I~~~f 575 (655)
.++|.++||||+|.|+.+.-|+
T Consensus 25 I~~l~~LPGIG~KsA~RlA~hL 46 (212)
T 3vdp_A 25 IEELSKLPGIGPKTAQRLAFFI 46 (212)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHH
Confidence 4678888888888888887655
No 254
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=33.22 E-value=66 Score=35.51 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=51.1
Q ss_pred CCcH-HHHHHHHHHHHHhcc------cchhHHHHHh---CCCCccHHHHHHHHHh-CCCHHHHHhcCHHHHhcCCCCCHH
Q psy11423 498 RVSN-KLANNILLAIQKSKL------TTFSRFIYAL---GIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGST 566 (655)
Q Consensus 498 GfG~-Ksa~nll~~I~~sk~------~~l~r~L~al---gIpgIG~~~Ak~L~~~-fgsl~~l~~as~eeL~~i~GIG~~ 566 (655)
|+|. |...||.....+-.. .....+|..| .++|||++++++|.+. +.++..|..++.+.|.+. +|.+
T Consensus 280 GIa~nk~LAKlAs~~~KP~G~~vl~~~~~~~~L~~LPV~~l~GIG~~t~~kL~~lGI~TigDLa~~~~~~L~~~--fG~~ 357 (504)
T 3gqc_A 280 GIGSNILLARMATRKAKPDGQYHLKPEEVDDFIRGQLVTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKE--FGPK 357 (504)
T ss_dssp EEESSHHHHHHHHHHHCSSCEEECCGGGHHHHHHHSBGGGSTTCCHHHHHHHHHTTCCBHHHHTTSCHHHHHHH--HCHH
T ss_pred EEeCCHHHHHHHHhhCccCCEEEECHHHHHHHHhcCChhHhhCcCHHHHHHHHHcCCCcHHHHHhccHHHHHHh--hChh
Confidence 4443 666666665443111 1244677776 6789999999988764 568888988888888876 5666
Q ss_pred HHHHHHHHh
Q psy11423 567 TVKAFIKFI 575 (655)
Q Consensus 567 ~A~~I~~~f 575 (655)
++..++.+.
T Consensus 358 ~g~~L~~~a 366 (504)
T 3gqc_A 358 TGQMLYRFC 366 (504)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 677776653
No 255
>2ziu_B Crossover junction endonuclease EME1; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Homo sapiens} PDB: 2ziw_B 2zix_B 2ziv_B
Probab=32.68 E-value=76 Score=33.09 Aligned_cols=51 Identities=14% Similarity=0.266 Sum_probs=34.5
Q ss_pred CCCCccHHHHHHHHHhCCCHHHHHhc-----CHHH----Hhc------------CCCCCHHHHHHHHHHhcC
Q psy11423 527 GIRHVGETTAKELANYFKNLECMFKA-----TEEQ----LLN------------IPKIGSTTVKAFIKFINQ 577 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~fgsl~~l~~a-----s~ee----L~~------------i~GIG~~~A~~I~~~f~~ 577 (655)
.||||....|..|+++|.|+..|..| +.++ |.. -.-||+.+++.|+.+|..
T Consensus 259 qi~gVS~ekA~aI~~~YPTp~~L~~Ay~~~~~~~e~~~lL~~~~~~~~~g~~~~~r~iG~~lS~rI~~~f~~ 330 (341)
T 2ziu_B 259 QLNRVSLEMASAVVNAYPSPQLLVQAYQQCFSDKERQNLLADIQVRRGEGVTSTSRRIGPELSRRIYLQMTT 330 (341)
T ss_dssp TSTTCCHHHHHHHHHHSCSHHHHHHHHHTCSCHHHHTTTTTTCBTTTTC----CCCBCCHHHHHHHHHHHHC
T ss_pred HccCCCHHHHHHHHHHCCCHHHHHHHHHhcCChHHHHHHHHhhhcccccCCcccCCccCHHHHHHHHHHHhc
Confidence 57777777777777777777666554 1211 222 234899999999998863
No 256
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=31.73 E-value=16 Score=32.26 Aligned_cols=50 Identities=10% Similarity=0.055 Sum_probs=25.3
Q ss_pred HHHHhcC-CCCCCEEEEEecCcccceeecccccCCCCCCcc-ccCCC-CCCCCCCcceee
Q psy11423 372 SEIYRKN-IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKI-FKIPN-ICPICNSKIIYI 428 (655)
Q Consensus 372 ~~i~~~~-i~iGd~V~v~raGdVIP~I~~vv~~~r~~~~~~-~~~P~-~CP~C~~~l~~~ 428 (655)
+.+.+-. +-.|+...|.. +|-.- +-...+.... -..+. .||.||++..+.
T Consensus 51 ~~~~~gt~~~e~a~L~i~~----~p~~~---~C~~CG~~~e~~~~~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 51 ETFREESLVCKDAILDIVD----EKVEL---ECKDCSHVFKPNALDYGVCEKCHSKNVII 103 (119)
T ss_dssp HHHGGGCTTTSSCCEEEEE----ECCEE---ECSSSSCEECSCCSTTCCCSSSSSCCCEE
T ss_pred HHHHhCChhhcCcEEEEEe----ccceE---EcCCCCCEEeCCCCCCCcCccccCCCcEE
Confidence 3345556 77788777763 22111 1111222111 12456 799999985543
No 257
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=31.27 E-value=21 Score=32.29 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=21.5
Q ss_pred CCCCCCCcce-----------e-----ecCceeEEecCCCcCCHHHHHhhcccccc
Q psy11423 417 ICPICNSKII-----------Y-----IESNLIARCSGSWIECIAQRKAGLQHFSS 456 (655)
Q Consensus 417 ~CP~C~~~l~-----------~-----~~~~~~~~C~n~~~~C~~q~~~~i~~F~s 456 (655)
.||.||++=. . ...+..++|.|+ . |+ +.||..
T Consensus 3 ~CP~Cg~~G~~V~~~Tvk~ll~~~~~~~~~~~y~~C~~~-~-C~------VvYf~~ 50 (130)
T 2hu9_A 3 RCPECSTEGWRVLPLTVGAHVKEGLWSKIKGDFYFCSLE-S-CE------VVYFNE 50 (130)
T ss_dssp BCTTTCCBCEEECHHHHHHHBCGGGGGGCCSCEEECCCT-T-CS------EEEECS
T ss_pred cCCCCCCcCcCccHHHHHHHhhHHHhccCCCCEEeECCC-C-CC------EEEECC
Confidence 5999998311 0 223568999996 6 84 678854
No 258
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=28.23 E-value=16 Score=33.10 Aligned_cols=29 Identities=24% Similarity=0.467 Sum_probs=20.9
Q ss_pred CCCCCCCCCCcceeecC----ceeEEecCCCcCCHHH
Q psy11423 414 IPNICPICNSKIIYIES----NLIARCSGSWIECIAQ 446 (655)
Q Consensus 414 ~P~~CP~C~~~l~~~~~----~~~~~C~n~~~~C~~q 446 (655)
-..+||.||+-|.-.++ ...+.|.+ |+-+
T Consensus 23 ~~~FCPeCgNmL~pked~~~~~l~~~Crt----CgY~ 55 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPREDKENNRLLFECRT----CSYV 55 (133)
T ss_dssp CCCBCTTTCCBCBCCBCTTTCCBCCBCSS----SCCB
T ss_pred CCeeCCCCCCEeeECccCCCceeEEECCC----CCCc
Confidence 35789999999875543 23688877 8653
No 259
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=28.12 E-value=27 Score=33.13 Aligned_cols=54 Identities=7% Similarity=0.015 Sum_probs=33.8
Q ss_pred HHHHHhcCCCCCCEEEEEecCcccceeecccccCCCCCCccccCCCCCCCCCCcceeecCceeEEecC
Q psy11423 371 ESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438 (655)
Q Consensus 371 ~~~i~~~~i~iGd~V~v~raGdVIP~I~~vv~~~r~~~~~~~~~P~~CP~C~~~l~~~~~~~~~~C~n 438 (655)
+..+++-+|+-||. .+.+ -.|..+-. . ..|-.| .||.|+.+++.. ++..++|..
T Consensus 11 i~~~~~e~lG~~~~-~fv~-----atI~~Ik~----d--~~~~Y~-ACp~CnKKV~~~-~~g~~~Cek 64 (172)
T 3u50_C 11 IQQAQASEIGQKKE-FYVY-----GNLVSIQM----K--NKLYYY-RCTCQGKSVLKY-HGDSFFCES 64 (172)
T ss_dssp HHHHHTCCTTCEEE-EEEE-----EEEECCCC----S--SCCEEE-ECTTSCCCEEEE-TTTEEEETT
T ss_pred HHHHHHhhCCCCCC-EEEE-----EEEEEEcC----C--CcEEeh-hchhhCCEeeeC-CCCeEECCC
Confidence 34577778888887 3333 24444322 1 235455 599999998843 445799976
No 260
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=27.99 E-value=38 Score=28.63 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=23.5
Q ss_pred hcccccc-----ccccccCCCCHHHHHHHHHcCCC
Q psy11423 450 GLQHFSS-----RKAMNIIGLGKKMIEKLVNANIV 479 (655)
Q Consensus 450 ~i~~F~s-----k~~l~I~GLG~k~i~~L~~~g~I 479 (655)
++.-|++ |+.-.++||||....+|.++|+-
T Consensus 6 Kh~~Fv~EPmgeK~V~evpGIG~~~~~~L~~~Gf~ 40 (89)
T 1ci4_A 6 KHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFD 40 (89)
T ss_dssp HHHHHHTSCCTTCCGGGSTTCCHHHHHHHHHTTCC
T ss_pred HHHHHHhCCCCCCCcccCCCcCHHHHHHHHHcCcc
Confidence 3445555 56667999999999999999973
No 261
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=27.97 E-value=88 Score=28.92 Aligned_cols=49 Identities=16% Similarity=0.300 Sum_probs=40.1
Q ss_pred CCCCeEecccccCccEEEecCCCC--------chHHHHHHcCCeeeCHHHHHHHHhc
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQKPG--------KKLEKAIKLNIKILDEKNFVKIVKG 648 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~~g--------~K~~kA~~lgi~ii~e~~f~~~l~~ 648 (655)
..|++|..=.+.+.+.+|.-...- -=+.+|+++|++|.+-+-+.+||..
T Consensus 58 ~LGa~I~~FFd~~VTiIITrR~~~~~~~yp~~DIL~rAr~~~mKIWs~EKl~RfL~~ 114 (151)
T 3oq0_A 58 TLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKAARFLKN 114 (151)
T ss_dssp HHTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEEEEHHHHHHHHHT
T ss_pred HcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCeeecHHHHHHHHHh
Confidence 678888888888888888865422 2568899999999999999998863
No 262
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=27.93 E-value=22 Score=31.53 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=19.3
Q ss_pred HhcCCCCCCEEEEEecCcccceeecccc
Q psy11423 375 YRKNIQIGDTVVVHRSGNVIPKITSSIL 402 (655)
Q Consensus 375 ~~~~i~iGd~V~v~raGdVIP~I~~vv~ 402 (655)
.-.+|.+||.|.| ++||.||- .+++.
T Consensus 38 ~~~~l~~GDiv~v-~~G~~iPa-Dg~vi 63 (124)
T 2kij_A 38 DVELVQRGDIIKV-VPGGKFPV-DGRVI 63 (124)
T ss_dssp ETTTCCTTCEEEC-CTTCBCSS-CEEEC
T ss_pred eHHHCCCCCEEEE-CCCCEEEe-eEEEE
Confidence 3348999999887 57999995 44443
No 263
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=27.90 E-value=23 Score=30.84 Aligned_cols=15 Identities=47% Similarity=1.039 Sum_probs=11.8
Q ss_pred ccCCCCCCCCCCcce
Q psy11423 412 FKIPNICPICNSKII 426 (655)
Q Consensus 412 ~~~P~~CP~C~~~l~ 426 (655)
+..|..||.|+|.-+
T Consensus 81 ~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 81 INIPSRCPKCKSEWI 95 (105)
T ss_dssp SSCCSSCSSSCCCCB
T ss_pred CCCCCCCcCCCCCcc
Confidence 357899999999654
No 264
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=27.81 E-value=21 Score=32.54 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=10.3
Q ss_pred CCCCCCCCCccee
Q psy11423 415 PNICPICNSKIIY 427 (655)
Q Consensus 415 P~~CP~C~~~l~~ 427 (655)
|..||.||++-..
T Consensus 107 ~~~CP~Cgs~~~~ 119 (139)
T 3a43_A 107 FLACPKCGSHDFE 119 (139)
T ss_dssp GCSCSSSSCCCEE
T ss_pred CCcCccccCCccE
Confidence 6789999997543
No 265
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=27.44 E-value=40 Score=36.34 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=32.8
Q ss_pred hHHHHHh---CCCCccHHHHHHHHHhC--CCHHHHHhcCHHHHhcCCCCCHHHHHHHHHH
Q psy11423 520 SRFIYAL---GIRHVGETTAKELANYF--KNLECMFKATEEQLLNIPKIGSTTVKAFIKF 574 (655)
Q Consensus 520 ~r~L~al---gIpgIG~~~Ak~L~~~f--gsl~~l~~as~eeL~~i~GIG~~~A~~I~~~ 574 (655)
..||..+ .++|||.++++++++.+ .++..|..++.+.|.+. +|++.+..++..
T Consensus 247 ~~~L~~lpv~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~~~--fG~~~g~~L~~~ 304 (435)
T 4ecq_A 247 PQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSH--FGEKNGSWLYAM 304 (435)
T ss_dssp HHHHHTCBGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHHHH--HCHHHHHHHHHH
T ss_pred HHHHhhCCHHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHHHH--hCccHHHHHHHH
Confidence 4566665 56788877766654443 36677777777777665 455555555443
No 266
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=27.36 E-value=23 Score=29.43 Aligned_cols=23 Identities=17% Similarity=0.488 Sum_probs=16.8
Q ss_pred CCCCCCCCcceee--cCceeEEecC
Q psy11423 416 NICPICNSKIIYI--ESNLIARCSG 438 (655)
Q Consensus 416 ~~CP~C~~~l~~~--~~~~~~~C~n 438 (655)
.+||-||.+|..- =|.+..||.+
T Consensus 32 afCPeCgq~Le~lkACGA~~yFC~~ 56 (81)
T 2jrp_A 32 ALCPDCRQPLQVLKACGAVDYFCQN 56 (81)
T ss_dssp EECSSSCSCCCEEEETTEEEECCTT
T ss_pred ccCcchhhHHHHHHhcCCcCeeecc
Confidence 3899999988643 2557888876
No 267
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=26.90 E-value=13 Score=30.93 Aligned_cols=13 Identities=38% Similarity=0.930 Sum_probs=10.5
Q ss_pred CCCCCCCCcceee
Q psy11423 416 NICPICNSKIIYI 428 (655)
Q Consensus 416 ~~CP~C~~~l~~~ 428 (655)
..||.||++|.+.
T Consensus 9 ~~~PlCG~~L~W~ 21 (95)
T 2k5c_A 9 AKCPICGSPLKWE 21 (95)
T ss_dssp EECSSSCCEECHH
T ss_pred ccCCcCCCccCHH
Confidence 4699999988754
No 268
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=26.39 E-value=14 Score=37.99 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=0.0
Q ss_pred CCCCccHHHHHHHHH-hCCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHh
Q psy11423 527 GIRHVGETTAKELAN-YFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~-~fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f 575 (655)
.+||+++..+++|.+ .|.+++.+..++..+|.++.|+++..+..+.+..
T Consensus 16 ~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~ 65 (324)
T 2z43_A 16 DLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEA 65 (324)
T ss_dssp --------------------------------------------------
T ss_pred HcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHhhCCCHHHHHHHHHHH
Confidence 346888888888876 4888999999999999999999998888877644
No 269
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=25.95 E-value=1e+02 Score=26.23 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=31.4
Q ss_pred cCcceeeeEEEEEEEEECCEEEEEeeCCCHHHHHhcCCCCCCEEEEEe
Q psy11423 342 GRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHR 389 (655)
Q Consensus 342 GRTG~itPvA~lePV~l~G~tVsratLhN~~~i~~~~i~iGd~V~v~r 389 (655)
.|+|...+++.+.=. |++--=++|+.|........+.+|+.|.|.-
T Consensus 36 ~k~G~~~~~~~~~l~--D~TG~I~~t~w~~~~~~~~~l~~G~vv~i~g 81 (115)
T 2k50_A 36 TRKGREGKLANVIIA--DDTGELRAVFWTENIKLLKKFREGDVIRIKD 81 (115)
T ss_dssp CTTSSCCEEEEEEEE--ETTEEEEEEEETTGGGGGGTCCTTSEEEEEE
T ss_pred cCCCCEEEEEEEEEE--eCCCeEEEEEeCchhhhhhcCCCCCEEEEEe
Confidence 456765677666433 4444556999987654446799999999875
No 270
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=25.78 E-value=98 Score=27.25 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=20.3
Q ss_pred HHHHHh-CCCCccHHHHHHHHHhCC
Q psy11423 521 RFIYAL-GIRHVGETTAKELANYFK 544 (655)
Q Consensus 521 r~L~al-gIpgIG~~~Ak~L~~~fg 544 (655)
++..|| .|.|||..+|..|++..+
T Consensus 13 ~v~~aLt~I~GIG~~~A~~I~~~~g 37 (114)
T 3r8n_M 13 HAVIALTSIYGVGKTRSKAILAAAG 37 (114)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHHTT
T ss_pred EeHhhHhhhcCcCHHHHHHHHHHcC
Confidence 456677 899999999999998876
No 271
>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A
Probab=25.77 E-value=82 Score=25.13 Aligned_cols=43 Identities=12% Similarity=0.291 Sum_probs=34.4
Q ss_pred HHHHHcCCCCChHHHhcCChhhhccccCCcHHHHHHHHHHHHHhc
Q psy11423 471 EKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSK 515 (655)
Q Consensus 471 ~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~Ksa~nll~~I~~sk 515 (655)
+-+..+|+ .++..+-.|+.+||..+ |+..---.+|+.+|+..+
T Consensus 21 d~F~~~g~-~s~~~v~~lt~eDL~~~-GIt~ghqkkIl~siq~lr 63 (69)
T 2y9u_A 21 DYFTTQGL-TTIYQIEHYSMDDLASL-KIPEQFRHAIWKGILDHR 63 (69)
T ss_dssp HHHHTTTC-CBHHHHTTCCHHHHHHT-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC-CcHHHHHHcCHHHHHhc-CCChhhHHHHHHhHHHHH
Confidence 44555665 78999999999999999 888866779999998654
No 272
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=25.68 E-value=38 Score=31.55 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=15.9
Q ss_pred CCCCCCCCCcceee-cC---ceeEEecC
Q psy11423 415 PNICPICNSKIIYI-ES---NLIARCSG 438 (655)
Q Consensus 415 P~~CP~C~~~l~~~-~~---~~~~~C~n 438 (655)
..+||.||+++... .+ ....+|..
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~ 30 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPK 30 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETT
T ss_pred cccCchhCCccccccccCCCCcceECCC
Confidence 35899999999643 12 24567754
No 273
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=25.56 E-value=49 Score=23.03 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=15.1
Q ss_pred CCCCCCCc---ceeecCceeEEecC
Q psy11423 417 ICPICNSK---IIYIESNLIARCSG 438 (655)
Q Consensus 417 ~CP~C~~~---l~~~~~~~~~~C~n 438 (655)
.||.|+++ |+++.+...++|..
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~a 26 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMA 26 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEET
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhc
Confidence 49999997 44545556777744
No 274
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=25.38 E-value=64 Score=26.27 Aligned_cols=46 Identities=24% Similarity=0.257 Sum_probs=34.7
Q ss_pred HHHHHHHcCCCCChHHHhcCChhhhccccCCc-HHHHHHHHHHHHHhcc
Q psy11423 469 MIEKLVNANIVVTAVDLYKINFKNLLRLDRVS-NKLANNILLAIQKSKL 516 (655)
Q Consensus 469 ~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG-~Ksa~nll~~I~~sk~ 516 (655)
-+..+.++|++ +...|..|+.+||..+ |+. ..--.+|+.+|+..+.
T Consensus 30 Y~~~F~~~~~~-~~~~l~~lt~~dL~~l-GI~~~GhrkkIl~ai~~l~~ 76 (83)
T 2qkq_A 30 YEESFAAAGFG-SFELVSQISAEDLLRI-GVTLAGHQKKILASVQHMKS 76 (83)
T ss_dssp GHHHHHHTTCC-SHHHHTTCCHHHHHHH-TCCCHHHHHHHHHHHTTC--
T ss_pred HHHHHHHcCCC-cHHHHhhCCHHHHHHC-CCCCHHHHHHHHHHHHHHHH
Confidence 56777788864 8889999999999997 666 5566788888876543
No 275
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=25.27 E-value=75 Score=34.05 Aligned_cols=52 Identities=21% Similarity=0.258 Sum_probs=33.1
Q ss_pred HHHHHh----CCCCccHHHHHHHHHh-CCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHH
Q psy11423 521 RFIYAL----GIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKF 574 (655)
Q Consensus 521 r~L~al----gIpgIG~~~Ak~L~~~-fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~ 574 (655)
.+|..+ .++|||.+++++|.+. ..++..|..++.+.|.+. +|...+..++++
T Consensus 228 ~~L~~Lppv~~l~GIG~~t~~~L~~lGI~TigdLa~~~~~~L~~~--fG~~~g~~L~~~ 284 (420)
T 3osn_A 228 HLIHSLNHIKEIPGIGYKTAKCLEALGINSVRDLQTFSPKILEKE--LGISVAQRIQKL 284 (420)
T ss_dssp HHHHHCSSGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHH--HHHHHHHHHHHH
T ss_pred HhhccCccHHHccCCCHHHHHHHHHhCCCcHHHHhhCCHHHHHHH--hCchHHHHHHHH
Confidence 455554 3678888888877653 446777777777777654 455555555554
No 276
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=25.23 E-value=47 Score=30.94 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=20.6
Q ss_pred HHHHHh-CCCCccHHHHHHHHHhCC
Q psy11423 521 RFIYAL-GIRHVGETTAKELANYFK 544 (655)
Q Consensus 521 r~L~al-gIpgIG~~~Ak~L~~~fg 544 (655)
++..|| .|.|||..+|..|++.++
T Consensus 27 ~v~~aLt~I~GIG~~~A~~I~~~~g 51 (155)
T 2xzm_M 27 ITPIALTGIRGIGRRFAYIICKVLK 51 (155)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred EEEEeeecccccCHHHHHHHHHHcC
Confidence 456677 899999999999999876
No 277
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=24.88 E-value=31 Score=32.72 Aligned_cols=67 Identities=12% Similarity=0.217 Sum_probs=40.7
Q ss_pred CCCCCCEEEE--------EecC-cccceeecccccCCCCCCccccCCCCCCCCCCcceeecCceeEEecCCCcCCHHHHH
Q psy11423 378 NIQIGDTVVV--------HRSG-NVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRK 448 (655)
Q Consensus 378 ~i~iGd~V~v--------~raG-dVIP~I~~vv~~~r~~~~~~~~~P~~CP~C~~~l~~~~~~~~~~C~n~~~~C~~q~~ 448 (655)
-|+.||...| .|-+ +.+=.|++. .|+..+. =-+-=+|+.|+..|. ++.+.|.+- . .|+.
T Consensus 80 ~l~eGE~f~lP~gvpH~P~r~~~e~~~lviE~---~r~~~~~-d~~~wyc~~c~~~~~----e~~f~~~dl-~---~~l~ 147 (174)
T 1yfu_A 80 DLKEGDIFLLPPHVRHSPQRPEAGSACLVIER---QRPAGML-DGFEWYCDACGHLVH----RVEVQLKSI-V---TDLP 147 (174)
T ss_dssp EECTTCEEEECTTCCEEEEBCCTTCEEEEEEE---CCCTTCC-EEEEEECTTTCCEEE----EEEECCSCH-H---HHSH
T ss_pred EECCCCEEEeCCCCCcCccccCCCCEEEEEEe---CCCCCCc-cceEEEcCCCCCEEE----EEEEEEech-h---HhHH
Confidence 4678998888 5665 666555444 3443321 112348999998655 357788873 3 5666
Q ss_pred hhcccccc
Q psy11423 449 AGLQHFSS 456 (655)
Q Consensus 449 ~~i~~F~s 456 (655)
.-+..|.+
T Consensus 148 ~~~~~f~~ 155 (174)
T 1yfu_A 148 PLFESFYA 155 (174)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 66765654
No 278
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=24.75 E-value=56 Score=32.21 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=28.4
Q ss_pred cEEEecCCC-CchHHHHHHcCCeeeCHHHHHHHHhc
Q psy11423 614 NYLVKGQKP-GKKLEKAIKLNIKILDEKNFVKIVKG 648 (655)
Q Consensus 614 ~ylv~g~~~-g~K~~kA~~lgi~ii~e~~f~~~l~~ 648 (655)
.+||++... ..|...|..+||||++.+-+.+-++.
T Consensus 70 t~lia~~~~rt~K~~~ala~gipiV~~~Wi~dc~~~ 105 (241)
T 2vxb_A 70 AFVVSDTFSRKVKYLEALAFNIPCVHPQFIKQCLKM 105 (241)
T ss_dssp EEEECSSCCCCHHHHHHHHHTCCEECTHHHHHHHHH
T ss_pred eEEEcCCCCCcHHHHHHHHcCCCEecHHHHHHHHHc
Confidence 578887654 47888999999999999998887743
No 279
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=24.36 E-value=74 Score=25.42 Aligned_cols=49 Identities=16% Similarity=0.214 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCc-HHHHHHHHHHHHHhcc
Q psy11423 464 GLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS-NKLANNILLAIQKSKL 516 (655)
Q Consensus 464 GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG-~Ksa~nll~~I~~sk~ 516 (655)
||+ +-+..+.+++ |+. ..|..|+.+||..| |+. ..-..+|+.+|+..+.
T Consensus 18 gl~-~Y~~~F~~~~-idg-~~Ll~Lt~~dL~~l-GI~~~Ghr~kIl~aI~~l~~ 67 (76)
T 2f3n_A 18 HLG-EHRDRFEDHE-IEG-AHLPALTKEDFVEL-GVTRVGHRENIERALRQLDG 67 (76)
T ss_dssp TCG-GGHHHHHHTT-CCG-GGGGGCCHHHHHHT-TCCCHHHHHHHHHHHHTC--
T ss_pred CCH-HHHHHHHHcC-CCH-HHHccCCHHHHHHc-CCCChhHHHHHHHHHHHHHH
Confidence 455 4556666666 443 47888999999887 665 5567788999986543
No 280
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=24.08 E-value=6.1 Score=46.52 Aligned_cols=26 Identities=35% Similarity=0.685 Sum_probs=22.3
Q ss_pred CCCCccHHHHHHHHHhCCCHHHHHhc
Q psy11423 527 GIRHVGETTAKELANYFKNLECMFKA 552 (655)
Q Consensus 527 gIpgIG~~~Ak~L~~~fgsl~~l~~a 552 (655)
||||||+++|.+|++.|+|++.+...
T Consensus 195 GVpGIG~KtA~kLl~~~gsle~i~~~ 220 (832)
T 1bgx_T 195 GVKGIGEKTARKLLEEWGSLEALLKN 220 (832)
T ss_dssp CCCCSSSCTTTTTGGGTTSSCSSSSS
T ss_pred CCCCcCchHHHHHHHHCCCHHHHHHH
Confidence 78999999999999999998877543
No 281
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=23.88 E-value=47 Score=25.73 Aligned_cols=22 Identities=9% Similarity=-0.070 Sum_probs=17.8
Q ss_pred HHHHhcCCCCCCEEEEEecCcc
Q psy11423 372 SEIYRKNIQIGDTVVVHRSGNV 393 (655)
Q Consensus 372 ~~i~~~~i~iGd~V~v~raGdV 393 (655)
+--+.+||.+||.|.|.-.|+-
T Consensus 29 eiR~~Lgi~~Gd~l~i~~~~~~ 50 (59)
T 1yfb_A 29 ELRRTLGIAEKDALEIYVDDEK 50 (59)
T ss_dssp HHHHHTTCCTTCEEEEEEETTE
T ss_pred HHHHHcCCCCCCEEEEEEECCE
Confidence 3456789999999999887773
No 282
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=23.38 E-value=47 Score=31.64 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=18.5
Q ss_pred CCCCCCCCCC---cceeecCceeEEecC
Q psy11423 414 IPNICPICNS---KIIYIESNLIARCSG 438 (655)
Q Consensus 414 ~P~~CP~C~~---~l~~~~~~~~~~C~n 438 (655)
....||.|++ .++.+.....+.|.+
T Consensus 20 ~~~~CPECGs~~t~IV~D~erGE~VCsd 47 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVERFSEGDVVCAL 47 (197)
T ss_dssp CCCCCTTTCCSSCCEEEEGGGTEEEETT
T ss_pred cCeECcCCCCcCCeEEEeCCCCEEEEcC
Confidence 3458999998 366655567889987
No 283
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=23.31 E-value=54 Score=31.15 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=41.2
Q ss_pred CCCCCCEEEE--------EecCcccceeecccccCCCCCCccccCCCCCCCCCCcceeecCceeEEecCCCcCCHHHHHh
Q psy11423 378 NIQIGDTVVV--------HRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKA 449 (655)
Q Consensus 378 ~i~iGd~V~v--------~raGdVIP~I~~vv~~~r~~~~~~~~~P~~CP~C~~~l~~~~~~~~~~C~n~~~~C~~q~~~ 449 (655)
-|+.||...+ .|-.+.+=.|+ ..+|+..+. =-+-=+|+.|+..|. ++.+.|.+- . .|+..
T Consensus 83 ~i~eGdmfllP~gvpHsP~r~~e~v~lvi---ErkR~~~~~-D~~~wyc~~c~~~~~----e~~f~~~dl-~---~ql~~ 150 (176)
T 1zvf_A 83 IINEGDSYLLPGNVPHSPVRFADTVGIVV---EQDRPGGEN-DKIRWYCSHCRQVVH----ESELQMLDL-G---TQVKE 150 (176)
T ss_dssp EECTTEEEEECTTCCEEEEECTTCEEEEE---EECCCSSSC-CEEEEECTTTCCEEE----EEECCSSST-T---HHHHH
T ss_pred EECCCCEEEcCCCCCcCCcccCCcEEEEE---EecCCCCCc-cceEEEcCCCCCEEE----EEEEEEech-h---HhHHH
Confidence 4678888887 45555554444 445554431 112348999998655 256788883 3 57777
Q ss_pred hcccccc
Q psy11423 450 GLQHFSS 456 (655)
Q Consensus 450 ~i~~F~s 456 (655)
-+..|.+
T Consensus 151 ~~~~f~~ 157 (176)
T 1zvf_A 151 AILDFEN 157 (176)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 7776654
No 284
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=23.30 E-value=1.9e+02 Score=26.90 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=45.1
Q ss_pred CCCCeEecccccCccEEEecCCCC-c-------hHHHHHHcCCeeeCHHHHHHHHhcccCCC
Q psy11423 600 TKGGKVVNFISKNTNYLVKGQKPG-K-------KLEKAIKLNIKILDEKNFVKIVKGFSTET 653 (655)
Q Consensus 600 ~~G~~v~~sVsk~t~ylv~g~~~g-~-------K~~kA~~lgi~ii~e~~f~~~l~~~~~~~ 653 (655)
.+|+++..-.+.+.+.+|.-.... . =+.+|++++++|.+-+-..++|..=+.++
T Consensus 96 ~LGA~I~~FFd~~VTiVIT~R~i~~~~~~~~~Dil~~A~~~~mKVW~yeK~~RFLkNL~v~~ 157 (160)
T 3qbz_A 96 TLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKAARFLKNLDVDL 157 (160)
T ss_dssp TTTCEEESSCCTTCCEEEESSCSSCGGGSCTTSHHHHHHHTTCEEEEHHHHHHHHHTTTCCS
T ss_pred HcCCEeeeeccCCeEEEEecCcCcccccCCchhHHHHHHHcCceecchHHHHHHHHhcCCCc
Confidence 789999999999999999866533 2 37889999999999999999887666554
No 285
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=23.26 E-value=76 Score=25.77 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=32.6
Q ss_pred HHHHHHcCCCCChHHHhcCChhhhccccCCcH-HHHHHHHHHHHHhc
Q psy11423 470 IEKLVNANIVVTAVDLYKINFKNLLRLDRVSN-KLANNILLAIQKSK 515 (655)
Q Consensus 470 i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~-Ksa~nll~~I~~sk 515 (655)
+..+.++| +.+...|..|+.+||..+ |+.. .--.+|+.+|+..+
T Consensus 23 ~~~F~~~~-~d~~~~l~~lt~~DL~~l-GI~~~GhrkkIl~ai~~l~ 67 (81)
T 1ucv_A 23 RDHFAAGG-YSSLGMVLRMNAQDVRAL-GITLMGHQKKILGSIQTMR 67 (81)
T ss_dssp HHHHHHTT-CCBHHHHTTCCHHHHHHH-TCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC-CChHHHHHHcCHHHHHhC-CCCChhHHHHHHHHHHHHH
Confidence 45566666 477888899999999988 6653 56678888887654
No 286
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=23.22 E-value=70 Score=23.84 Aligned_cols=22 Identities=23% Similarity=0.141 Sum_probs=17.9
Q ss_pred HHHHHhcCCCCCCEEEEEecCc
Q psy11423 371 ESEIYRKNIQIGDTVVVHRSGN 392 (655)
Q Consensus 371 ~~~i~~~~i~iGd~V~v~raGd 392 (655)
.+.-+.+||..||.|.+.-.++
T Consensus 18 k~ir~~lgi~~Gd~v~i~~~~~ 39 (53)
T 2l66_A 18 AKVRQKFQIKEGDLVKVTFDES 39 (53)
T ss_dssp HHHHHHSCCCTTCEEEEEECSS
T ss_pred HHHHHHcCcCCCCEEEEEEECC
Confidence 3445778999999999997776
No 287
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=23.01 E-value=32 Score=22.92 Aligned_cols=13 Identities=15% Similarity=0.503 Sum_probs=10.7
Q ss_pred CCCCCCCCCCcce
Q psy11423 414 IPNICPICNSKII 426 (655)
Q Consensus 414 ~P~~CP~C~~~l~ 426 (655)
+++.||.|+..+.
T Consensus 2 m~~~C~~C~k~Vy 14 (31)
T 1zfo_A 2 MNPNCARCGKIVY 14 (31)
T ss_dssp CCCBCSSSCSBCC
T ss_pred CCCcCCccCCEEe
Confidence 5778999998764
No 288
>1ok0_A Tendamistat, alpha-amylase inhibitor HOE-467A; 0.93A {Streptomyces tendae} SCOP: b.5.1.1 PDB: 1bvn_T 1hoe_A 2ait_A 3ait_A 4ait_A
Probab=22.98 E-value=32 Score=27.67 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=22.1
Q ss_pred EEEecceeEEEEEEeCCEEe--------EEEecCCCCccc
Q psy11423 122 AELKFDGIAVNLRYEYGYLK--------QASTRGDGNIGE 153 (655)
Q Consensus 122 ~e~KiDGlsi~l~Y~~G~l~--------~a~TRGdG~~Ge 153 (655)
.--=-|.+++.+.|+||.-+ ..+|=|+|.+|+
T Consensus 24 ~N~Cs~tvsVtV~Y~dG~~~PCrv~~PG~~~Tfg~gy~g~ 63 (74)
T 1ok0_A 24 DNGCAETVTVKVVYEDDTEGLCYAVAPGQITTVGDGYIGS 63 (74)
T ss_dssp EECSSSCEEEEEEETTSCBCCCEEECTTCEEEEEECTTST
T ss_pred cCCCcccEEEEEEEeCCCcceeEEeCCCceEEeccccccc
Confidence 33345789999999999621 235777777776
No 289
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=22.74 E-value=1e+02 Score=24.81 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=35.1
Q ss_pred HHHHHHHHcCCCCChHHHhcCChhhhccccCCc-HHHHHHHHHHHHHhcc
Q psy11423 468 KMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS-NKLANNILLAIQKSKL 516 (655)
Q Consensus 468 k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG-~Ksa~nll~~I~~sk~ 516 (655)
.-...|.++|+ .+++++-.++.+||..+ |+. ..--.+|+.+|+.-+.
T Consensus 26 ~Y~~~F~~~gy-~~~~~~~~lt~~DL~~l-GI~~~ghrkkil~ai~~L~~ 73 (78)
T 1v38_A 26 EYTSTLLLNGY-ETLDDLKDIKESHLIEL-NIADPEDRARLLSAAESLLS 73 (78)
T ss_dssp GGHHHHHHHTC-CBHHHHTTCCHHHHHHT-TTCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCC-CCHHHHhhcCHHHHHHc-CCCCHHHHHHHHHHHHHHHh
Confidence 34566777786 67888888999999998 665 4566788888876543
No 290
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=22.65 E-value=1e+02 Score=32.70 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=27.9
Q ss_pred HHHHHhCCCCccHHHHHHHHHhCCCHHHHHhcC
Q psy11423 521 RFIYALGIRHVGETTAKELANYFKNLECMFKAT 553 (655)
Q Consensus 521 r~L~algIpgIG~~~Ak~L~~~fgsl~~l~~as 553 (655)
-||.-..+||||..+.++|+++|++.+++..+.
T Consensus 24 ~wL~L~~~~gvG~~~~~~Ll~~fgs~~~~~~a~ 56 (382)
T 3maj_A 24 DWMRLIRAENVGPRTFRSLINHFGSARAALERL 56 (382)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHHSSHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCHHHHHHcC
Confidence 456556899999999999999999998877653
No 291
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=22.56 E-value=42 Score=34.38 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=17.4
Q ss_pred CCCCCCCcceeec----CceeEEecC
Q psy11423 417 ICPICNSKIIYIE----SNLIARCSG 438 (655)
Q Consensus 417 ~CP~C~~~l~~~~----~~~~~~C~n 438 (655)
.||.||+++.+.. +-..+||+.
T Consensus 253 pC~~CGt~I~~~~~g~~gRsTyfCp~ 278 (287)
T 3w0f_A 253 NCDQCHSKITVCRFGENSRMTYFCPH 278 (287)
T ss_dssp BCTTTCCBCEEECSSTTCCCEEECTT
T ss_pred CCCCCCCEEEEEEecCCCCCEEECCC
Confidence 5999999998643 467889976
No 292
>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D
Probab=22.35 E-value=1e+02 Score=29.22 Aligned_cols=102 Identities=19% Similarity=0.233 Sum_probs=60.4
Q ss_pred EeecCCcceeeEEEEEEEEeecCcceeeeEEEEEEEEECCEEEEEeeCCCHHHHHhcCCCCCCEEEEEecCcccceeecc
Q psy11423 321 LAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSS 400 (655)
Q Consensus 321 iA~Kf~~~~~~T~v~~I~~qvGRTG~itPvA~lePV~l~G~tVsratLhN~~~i~~~~i~iGd~V~v~raGdVIP~I~~v 400 (655)
|-||-.......+|.+|+..-+|| .|+|.+ ..-+|. .+= .+.-.|+.+||+|.....- |
T Consensus 5 iDf~r~~~~i~~~V~~IeyDP~Rs---A~IAlv--~y~dg~--~~y------ilAp~gl~~Gd~I~~g~~a---~----- 63 (178)
T 1giy_D 5 IDFKRDKDGIPGRVATIEYDPNRS---ANIALI--NYADGE--KRY------IIAPKNLKVGMEIMSGPDA---D----- 63 (178)
T ss_pred eecccccCCccEEEEEEEECCCCC---eEEEEE--EecCCC--EEE------EECccCCccccEEEECCCC---c-----
Confidence 345554444578999999999999 566655 334553 111 1344699999999874221 1
Q ss_pred cccCCCCCCccc-cCCCCCCCCCCcceeecCceeEEecCCCcCCHHHHHhh
Q psy11423 401 ILSLRPNDSKIF-KIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAG 450 (655)
Q Consensus 401 v~~~r~~~~~~~-~~P~~CP~C~~~l~~~~~~~~~~C~n~~~~C~~q~~~~ 450 (655)
-.+++..|+ .+|.-+..|+-++.--+++...|... |-+|++++
T Consensus 64 ---i~~GN~lpL~~iP~Gt~I~NIE~~pG~gg~laRsAG----t~a~ii~k 107 (178)
T 1giy_D 64 ---IKIGNALPLENIPVGTLVHNIELKPGRGGQLVRAAG----TSAQVLGK 107 (178)
T ss_pred ---cccCCCcccccCCCCCEEEeEeccCCCCeEEEEeCC----CeEEEEEe
Confidence 123443332 47877777876655444455444443 55666654
No 293
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=22.33 E-value=60 Score=27.13 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=15.3
Q ss_pred chhHHHHHhCCCCccHHHHHHHHHh
Q psy11423 518 TFSRFIYALGIRHVGETTAKELANY 542 (655)
Q Consensus 518 ~l~r~L~algIpgIG~~~Ak~L~~~ 542 (655)
++...-.+..++|||++++++|-+.
T Consensus 53 ~i~s~~e~~~L~giG~ki~~~L~e~ 77 (87)
T 2kp7_A 53 PLRSGKEAKILQHFGDRLCRMLDEK 77 (87)
T ss_dssp CCCSHHHHHTCTTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHhhcccHHHHHHHHHH
Confidence 3444555567777777777666554
No 294
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=22.13 E-value=1e+02 Score=24.88 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHcCCCCChHHHhcCChhhhccccCCc-HHHHHHHHHHHHHhcc
Q psy11423 464 GLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVS-NKLANNILLAIQKSKL 516 (655)
Q Consensus 464 GLG~k~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG-~Ksa~nll~~I~~sk~ 516 (655)
||+. -+..+.++++ +-..|..|+.++|..| |+. ..-..+|+.+|+..+.
T Consensus 23 gl~~-Y~~~F~~~~i--dg~~Ll~Lt~~dL~~l-GI~~~ghr~kIl~aI~~L~~ 72 (81)
T 3bq7_A 23 SLCE-YKDIFTRHDI--RGSGLLHLERRDLKDL-GVTKVGHMKRILCGIKELSR 72 (81)
T ss_dssp TCGG-GHHHHHHTTC--CHHHHTTCCHHHHHHT-TCCCHHHHHHHHHHHHHHHC
T ss_pred CCHH-HHHHHHHcCC--CHHHHCcCCHHHHhHc-CCCCHHHHHHHHHHHHHHHH
Confidence 4554 5566666664 4455888999999987 663 4567788999987543
No 295
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.02 E-value=64 Score=29.77 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=26.6
Q ss_pred HHHHHh-CCCCccHHHHHHHHHhCC-CH-HHHHhcCHHHHhc
Q psy11423 521 RFIYAL-GIRHVGETTAKELANYFK-NL-ECMFKATEEQLLN 559 (655)
Q Consensus 521 r~L~al-gIpgIG~~~Ak~L~~~fg-sl-~~l~~as~eeL~~ 559 (655)
++..|| .|.|||...|..|++..+ +. ..+...+.+++.+
T Consensus 20 ~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~ 61 (148)
T 3j20_O 20 QLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKK 61 (148)
T ss_dssp CHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHH
T ss_pred EehhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHH
Confidence 456676 799999999999998765 21 2344455555554
No 296
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=22.00 E-value=60 Score=27.85 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=16.7
Q ss_pred CCCCCCCCCCcceeecCceeEEecC
Q psy11423 414 IPNICPICNSKIIYIESNLIARCSG 438 (655)
Q Consensus 414 ~P~~CP~C~~~l~~~~~~~~~~C~n 438 (655)
|-..||.|+++|++.++ ...|..
T Consensus 31 M~~~CP~Cq~eL~~~g~--~~hC~~ 53 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNG--HARCRS 53 (101)
T ss_dssp CCCBCSSSCSBEEEETT--EEEETT
T ss_pred ccccCccCCCcceecCC--EEECcc
Confidence 44789999999998643 445654
No 297
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=21.89 E-value=59 Score=33.52 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.1
Q ss_pred ccCCCCHHHHHHHHHcCCCCChHHHh
Q psy11423 461 NIIGLGKKMIEKLVNANIVVTAVDLY 486 (655)
Q Consensus 461 ~I~GLG~k~i~~L~~~g~I~~i~DL~ 486 (655)
+|+|+|+||+.+|+.+ .+++.++
T Consensus 229 GvpGiG~ktA~kli~~---gsle~i~ 251 (326)
T 1a76_A 229 GVKGIGFKRAYELVRS---GVAKDVL 251 (326)
T ss_dssp TTTTCCHHHHHHHHHH---TCHHHHH
T ss_pred CCCCcCHHHHHHHHHc---CCHHHHH
Confidence 6899999999999998 4777777
No 298
>2lta_A De novo designed protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.47 E-value=19 Score=29.73 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHhCCCCCCCCceeeCCHHHHHHHHHHHHHhhcCCC
Q psy11423 247 SSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLP 291 (655)
Q Consensus 247 ~~~~e~l~~L~~~GF~~~~~~~~~~~~~ev~~~~~~~~~~r~~l~ 291 (655)
....+.++.|++.||.|- .+.+-+++-.|++.+...|.++.
T Consensus 40 krleekiqklksqgfevr----kvkddddidkwidkikkerpqle 80 (110)
T 2lta_A 40 KRLEEKIQKLKSQGFEVR----KVKDDDDIDKWIDKIKKERPQLE 80 (110)
Confidence 345578899999999874 34466788899999988888876
No 299
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=21.88 E-value=61 Score=29.12 Aligned_cols=39 Identities=28% Similarity=0.217 Sum_probs=27.2
Q ss_pred HHHHHh-CCCCccHHHHHHHHHhCC-CH-HHHHhcCHHHHhc
Q psy11423 521 RFIYAL-GIRHVGETTAKELANYFK-NL-ECMFKATEEQLLN 559 (655)
Q Consensus 521 r~L~al-gIpgIG~~~Ak~L~~~fg-sl-~~l~~as~eeL~~ 559 (655)
++..|| .|.|||..+|..|++.++ +. ..+...+.+++.+
T Consensus 14 ~v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~ 55 (126)
T 2vqe_M 14 RVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVR 55 (126)
T ss_dssp BHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHH
T ss_pred EeeeehhccccccHHHHHHHHHHcCCCcccccCcCCHHHHHH
Confidence 466677 899999999999999876 11 2344455555554
No 300
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=21.67 E-value=31 Score=33.37 Aligned_cols=11 Identities=36% Similarity=0.664 Sum_probs=9.1
Q ss_pred CCCCCCCCCCc
Q psy11423 414 IPNICPICNSK 424 (655)
Q Consensus 414 ~P~~CP~C~~~ 424 (655)
.|..||.||.+
T Consensus 185 ~p~~CP~C~~~ 195 (202)
T 1yuz_A 185 DFEKCPICFRP 195 (202)
T ss_dssp CCSBCTTTCCB
T ss_pred CCCCCCCCCCC
Confidence 47899999974
No 301
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.65 E-value=88 Score=25.79 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=34.0
Q ss_pred HHHHHHHcCCCCChHHHhcCChhhhccccCCcH-HHHHHHHHHHHHhc
Q psy11423 469 MIEKLVNANIVVTAVDLYKINFKNLLRLDRVSN-KLANNILLAIQKSK 515 (655)
Q Consensus 469 ~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG~-Ksa~nll~~I~~sk 515 (655)
-+..|.++|+ .+...|..|+.+||..| |+.. .--.+|+.+|+..+
T Consensus 27 Y~~~F~~~~~-~~~~~l~~lt~~dL~~l-GI~~~GhRkkIl~ai~~l~ 72 (88)
T 2e8n_A 27 YTEHFMAAGY-TAIEKVVQMTNDDVKRI-GVRLPGHQKRIAYSLLGLK 72 (88)
T ss_dssp GHHHHHHHTC-SSHHHHTTSCTTHHHHT-TCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-ChHHHHHhCCHHHHHHC-CCCChhHHHHHHHHHHHHH
Confidence 3466667774 77899999999999998 6653 45678889888654
No 302
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=21.46 E-value=3.8e+02 Score=22.78 Aligned_cols=77 Identities=19% Similarity=0.167 Sum_probs=55.3
Q ss_pred cCCcceeeEEEEEEEEeecCcceeeeEEEEEEEEECCEEEEEeeCCCHHHHHhcCCCCCCEEEEEecCcccceeecc
Q psy11423 324 KFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSS 400 (655)
Q Consensus 324 Kf~~~~~~T~v~~I~~qvGRTG~itPvA~lePV~l~G~tVsratLhN~~~i~~~~i~iGd~V~v~raGdVIP~I~~v 400 (655)
|-..+-.+-.|.+|.....++|--.-++++.==..++.+.=+.---=++.+.+.++..||.|+|.++-..+-++-+.
T Consensus 8 kE~keVyEGEV~ei~~~~~~~~~~~~~~~itLkT~d~ek~l~lg~~i~e~L~kekV~~GDVI~Id~~sG~V~klGRs 84 (95)
T 2cqa_A 8 KEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKLGRS 84 (95)
T ss_dssp CCCCSEEEEEEEEEEEECTTSSSSSCEEEEEEECSSSEEEEEECSHHHHHHHHTTCCTTSEEEEETTTTEEEEEECC
T ss_pred EEEEEEEEEEEEEEEEeecCCCCcceEEEEEEEecCCcEEEeCCHHHHHHHHHcCceeCCEEEEEccCCEEEEEEEe
Confidence 44556667888888888888763222333333445677777766666888999999999999999987777776654
No 303
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=21.46 E-value=36 Score=25.17 Aligned_cols=12 Identities=33% Similarity=1.281 Sum_probs=9.8
Q ss_pred cCCC--CCCCCCCc
Q psy11423 413 KIPN--ICPICNSK 424 (655)
Q Consensus 413 ~~P~--~CP~C~~~ 424 (655)
.+|+ .||.||.+
T Consensus 26 ~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 26 QLPDDWCCPVCGVS 39 (46)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred hCCCCCcCcCCCCc
Confidence 3788 99999974
No 304
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=21.33 E-value=52 Score=26.70 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.0
Q ss_pred HHHHHhcCCCCCCEEEEEecCcc
Q psy11423 371 ESEIYRKNIQIGDTVVVHRSGNV 393 (655)
Q Consensus 371 ~~~i~~~~i~iGd~V~v~raGdV 393 (655)
.+..+++||..||.|.|...|+-
T Consensus 19 k~~~~~lgl~~gd~v~i~~~~~~ 41 (82)
T 1mvf_D 19 ATLMQALNLNIDDEVKIDLVDGK 41 (82)
T ss_dssp HHHHHHTTCCTTCBEEEEEETTE
T ss_pred HHHHHHcCCCCCCEEEEEEECCE
Confidence 56788999999999999988774
No 305
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=21.13 E-value=1.2e+02 Score=30.79 Aligned_cols=63 Identities=16% Similarity=0.272 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHhcChhHHHHHHHHHHcCcccccCCCCCCCeEecccccCccEEEecCCCC------chHHHHHHcCCeee
Q psy11423 564 GSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGGKVVNFISKNTNYLVKGQKPG------KKLEKAIKLNIKIL 637 (655)
Q Consensus 564 G~~~A~~I~~~f~~~~n~~li~~L~~~Gi~~~~~~~~~G~~v~~sVsk~t~ylv~g~~~g------~K~~kA~~lgi~ii 637 (655)
|..+|++|.+.+. +.++.|.+.|+. ...-.+++|+.+. +|.+.|+++||...
T Consensus 8 Gk~ia~~i~~~~~-----~~v~~l~~~g~~-----------------P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~ 65 (281)
T 2c2x_A 8 GKATRDEIFGDLK-----QRVAALDAAGRT-----------------PGLGTILVGDDPGSQAYVRGKHADCAKVGITSI 65 (281)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHTTCC-----------------CEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHH-----HHHHHHHhcCCC-----------------ceEEEEEeCCChhhHHHHHHHHHHHHHcCCEEE
Confidence 5678888877663 446666654432 2344677888754 57888999998853
Q ss_pred --------CHHHHHHHHhc
Q psy11423 638 --------DEKNFVKIVKG 648 (655)
Q Consensus 638 --------~e~~f~~~l~~ 648 (655)
+++|+++.+..
T Consensus 66 ~~~lp~~~s~~ell~~i~~ 84 (281)
T 2c2x_A 66 RRDLPADISTATLNETIDE 84 (281)
T ss_dssp EEEECTTCCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 79999998854
No 306
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=21.13 E-value=26 Score=38.95 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=25.8
Q ss_pred ccccCCCCHHHHHHHHHc-CC--CCChH---HHhcCChhhhccc
Q psy11423 459 AMNIIGLGKKMIEKLVNA-NI--VVTAV---DLYKINFKNLLRL 496 (655)
Q Consensus 459 ~l~I~GLG~k~i~~L~~~-g~--I~~i~---DL~~L~~~~L~~l 496 (655)
.-++.|+|+++.++|.+. |+ +.++. |++..+.++|..+
T Consensus 309 V~~l~GIG~~t~~~L~~llGI~~~~ti~~i~~l~~~t~~dL~~~ 352 (520)
T 3mfi_A 309 ITSFWTLGGVLGKELIDVLDLPHENSIKHIRETWPDNAGQLKEF 352 (520)
T ss_dssp GGGSTTCSSHHHHHHHHHTTCCSSSHHHHHHHHSCSCHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHhcCCCcccchhhhhhccCCCHHHHHhc
Confidence 447999999999999998 64 25553 3333455555544
No 307
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=20.99 E-value=67 Score=33.33 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=37.7
Q ss_pred hhHHHHHh---CCCCccHHHHHHHHHh-CCCHHHHHhcCHHHHhcCCCCCHHHHHHHHHHh
Q psy11423 519 FSRFIYAL---GIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575 (655)
Q Consensus 519 l~r~L~al---gIpgIG~~~Ak~L~~~-fgsl~~l~~as~eeL~~i~GIG~~~A~~I~~~f 575 (655)
...+|..+ .+||||++++++|.+. +.++..|..++.+.|.+. +|...+..++...
T Consensus 172 ~~~~L~~lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~--fG~~~g~~l~~~a 230 (354)
T 3bq0_A 172 VQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKI--TGKAKALYLLKLA 230 (354)
T ss_dssp HHHHHHHCBSTTSTTCCHHHHHHHTTTTCCBGGGGGGSCHHHHHHH--HCHHHHHHHHHHH
T ss_pred HHHHHHhCCcccccCcCHHHHHHHHHcCCccHHHHhcCCHHHHHHH--HCHHHHHHHHHHh
Confidence 34677776 6799999998888653 457777888887777765 5554455555443
No 308
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=20.36 E-value=69 Score=33.19 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhcc------cchhHHHHHh---CCCCccHHHHHHHHHh-CCCHHHHHhcCHHHHhcCCCCCHHHHHHH
Q psy11423 502 KLANNILLAIQKSKL------TTFSRFIYAL---GIRHVGETTAKELANY-FKNLECMFKATEEQLLNIPKIGSTTVKAF 571 (655)
Q Consensus 502 Ksa~nll~~I~~sk~------~~l~r~L~al---gIpgIG~~~Ak~L~~~-fgsl~~l~~as~eeL~~i~GIG~~~A~~I 571 (655)
|...||...+.+-.. .....+|..+ .++|||++++++|.+. +.++..|..++.+.|.+. +|...+..+
T Consensus 148 k~lAKlAs~~~Kp~g~~~~~~~~~~~~L~~lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~--fG~~~g~~l 225 (352)
T 1jx4_A 148 KVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGM--IGEAKAKYL 225 (352)
T ss_dssp HHHHHHHHHHHCSSCEEECCHHHHHHHHHHSBGGGSTTCCHHHHHHHHTTTCCBGGGGGSSCHHHHHHH--HCHHHHHHH
T ss_pred HHHHHHHhccCCCCCEEEECHHHHHHHHHhCCCCcccccCHHHHHHHHHcCCchHHHHHCCCHHHHHHh--cChhHHHHH
Confidence 556666665543111 1234677666 6799999998888653 457777777777777665 455444444
Q ss_pred HHH
Q psy11423 572 IKF 574 (655)
Q Consensus 572 ~~~ 574 (655)
+..
T Consensus 226 ~~~ 228 (352)
T 1jx4_A 226 ISL 228 (352)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 309
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=20.27 E-value=1e+02 Score=25.61 Aligned_cols=44 Identities=23% Similarity=0.059 Sum_probs=31.9
Q ss_pred HHHHHHHcCCCCChHHHhcCChhhhccccCCc-HHHHHHHHHHHHHh
Q psy11423 469 MIEKLVNANIVVTAVDLYKINFKNLLRLDRVS-NKLANNILLAIQKS 514 (655)
Q Consensus 469 ~i~~L~~~g~I~~i~DL~~L~~~~L~~l~GfG-~Ksa~nll~~I~~s 514 (655)
-+..|.++| +.+.+.|..|+.+||..+ |+. ..--.+|+.+|+.-
T Consensus 41 Y~~~F~~~g-~~~le~l~~lt~~DL~~l-GIt~~GHRkkIL~aI~~L 85 (86)
T 2k4p_A 41 YEEGLVHNG-WDDLEFLSDITEEDLEEA-GVQDPAHKRLLLDTLQLS 85 (86)
T ss_dssp GHHHHHTTT-CCCHHHHTTCCHHHHHHT-TCCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHcC-CChHHHHHhCCHHHHHHC-CCCCHHHHHHHHHHHHHc
Confidence 344555555 478888888999999998 666 34566788888764
No 310
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=20.21 E-value=51 Score=33.26 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=19.1
Q ss_pred HHHHhcCCCCCHHHHHHHHHH
Q psy11423 554 EEQLLNIPKIGSTTVKAFIKF 574 (655)
Q Consensus 554 ~eeL~~i~GIG~~~A~~I~~~ 574 (655)
.++|.+++|||+++|+.|.-|
T Consensus 206 ~~~L~~lpGIG~~TA~~ill~ 226 (282)
T 1mpg_A 206 MKTLQTFPGIGRWTANYFALR 226 (282)
T ss_dssp HHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHHH
Confidence 578999999999999999875
Done!