Your job contains 1 sequence.
>psy11423
MSFHAKKKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYP
ELLTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEY
IAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEV
RCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGEL
RGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYK
INCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDG
ITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPI
CNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVV
TAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELA
NYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNT
KGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGFSTETKI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy11423
(655 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|CBU_0542 - symbol:CBU_0542 "DNA ligase, NAD-depe... 1263 8.1e-140 2
UNIPROTKB|P15042 - symbol:ligA species:83333 "Escherichia... 1190 2.7e-128 2
UNIPROTKB|Q9KTD1 - symbol:ligA "DNA ligase" species:24327... 1167 1.7e-126 2
TIGR_CMR|VC_0971 - symbol:VC_0971 "DNA ligase" species:68... 1167 1.7e-126 2
TIGR_CMR|SO_2896 - symbol:SO_2896 "DNA ligase, NAD-depend... 1136 8.2e-123 2
TIGR_CMR|CHY_1100 - symbol:CHY_1100 "DNA ligase, NAD-depe... 1107 3.6e-112 1
TIGR_CMR|GSU_0890 - symbol:GSU_0890 "DNA ligase, NAD-depe... 1103 9.7e-112 1
TIGR_CMR|DET_0596 - symbol:DET_0596 "DNA ligase, NAD-depe... 963 1.1e-103 2
TIGR_CMR|BA_0306 - symbol:BA_0306 "DNA ligase, NAD-depend... 1009 8.8e-102 1
UNIPROTKB|P63973 - symbol:ligA "DNA ligase" species:1773 ... 874 3.3e-98 2
TIGR_CMR|ECH_0301 - symbol:ECH_0301 "DNA ligase, NAD-depe... 872 7.7e-97 2
TIGR_CMR|SPO_1680 - symbol:SPO_1680 "DNA ligase, NAD-depe... 856 1.1e-93 2
TIGR_CMR|NSE_0500 - symbol:NSE_0500 "DNA ligase, NAD-depe... 729 2.2e-82 2
TIGR_CMR|CJE_0689 - symbol:CJE_0689 "DNA ligase, NAD-depe... 801 9.7e-80 1
TIGR_CMR|APH_0138 - symbol:APH_0138 "DNA ligase, NAD-depe... 785 4.8e-78 1
DICTYBASE|DDB_G0282299 - symbol:DDB_G0282299 "DNA ligase"... 341 3.0e-44 3
UNIPROTKB|P25772 - symbol:ligB species:83333 "Escherichia... 117 0.00032 3
>TIGR_CMR|CBU_0542 [details] [associations]
symbol:CBU_0542 "DNA ligase, NAD-dependent" species:227377
"Coxiella burnetii RSA 493" [GO:0003911 "DNA ligase (NAD+)
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR003583 InterPro:IPR004149 InterPro:IPR004150
InterPro:IPR013839 InterPro:IPR013840 InterPro:IPR018239
Pfam:PF01653 Pfam:PF03119 Pfam:PF03120 PIRSF:PIRSF001604
PROSITE:PS01055 PROSITE:PS01056 SMART:SM00278 SMART:SM00532
InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 EMBL:AE016828 GenomeReviews:AE016828_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 KO:K01972 GO:GO:0003911 PANTHER:PTHR11107:SF5
TIGRFAMs:TIGR00575 HOGENOM:HOG000218458 OMA:ENVRTIR HSSP:P26996
RefSeq:NP_819574.2 ProteinModelPortal:Q83DZ6 PRIDE:Q83DZ6
GeneID:1208427 KEGG:cbu:CBU_0542 PATRIC:17929781
ProtClustDB:CLSK2516812 BioCyc:CBUR227377:GJ7S-545-MONOMER
Uniprot:Q83DZ6
Length = 673
Score = 1263 (449.7 bits), Expect = 8.1e-140, Sum P(2) = 8.1e-140
Identities = 243/583 (41%), Positives = 373/583 (63%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
+K+ R+ L++E++ HN YY+ P I D+ YD+L EL+K+E+KYPE +T S TQ
Sbjct: 8 AKIQKRIERLRQEINDHNYRYYVLSQPTIPDSVYDELFHELEKLEKKYPETITPSSPTQR 67
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + + VHH M+SLDN F ++ + F+KRI LKL K EY+ E K DG+A+
Sbjct: 68 VGAEPLKVFEPVHHEIPMLSLDNVFDEKGLRAFDKRIRQRLKLDKPFEYVCEPKMDGVAL 127
Query: 132 NLRYEYGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L +A+TRGD PL L PEL+E+R EVL+ ++ F
Sbjct: 128 SLLYENGELIRAATRGDGYTGENVTQNTRTIASVPLQLRGNDYPELVEIRGEVLMPREGF 187
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
K N+ G K F NPRNAA+G LRQL+P+I + L F+ + +G L+G + P +H +
Sbjct: 188 AKFNREAEKRGDKTFANPRNAASGSLRQLDPRITAKRPLIFYGYLIGLLKGKDFPKNHCD 247
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
+L W++ G+ + E V+ G+ +++Y+ + R +P++IDG+V K+N L Q +LG
Sbjct: 248 VLKWFKDWGIPVISEIKVVGGIEGCLDYYEHLVKTREKMPFDIDGIVIKVNSLQVQAELG 307
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F SRAPR+A+AYKF ++E +T +KAI Q+GRTG +TPVA L+PV + G+T++ ATLHN
Sbjct: 308 FVSRAPRWAIAYKFPAQEKMTVVKAIEFQVGRTGAVTPVARLEPVSVSGVTVSNATLHNF 367
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
E+YRK++++GDTV+V R+G+VIP++ IL+ RP +K+ KIP+ CP+C++++I E
Sbjct: 368 DELYRKDVRVGDTVIVRRAGDVIPEVVGPILAKRPKKAKLIKIPSRCPVCHAEVIKPEGE 427
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARC G + C AQ + ++HF+SR+A++I GLG K++E + ++ +Y++
Sbjct: 428 AVARCVGG-LYCRAQLRESIKHFASRRALDIEGLGDKLVELFIQEKLIKDITGIYQLKKS 486
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
+ L R+ K A N+L AI+KSK TT RF+YALGIR VG+TTA+ LA +F L+ + K
Sbjct: 487 AITALPRMGEKSAENLLTAIEKSKKTTLPRFLYALGIRGVGDTTARTLARHFHELDLLMK 546
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW 594
A+ E L I IG + F +Q + LI++L +G++W
Sbjct: 547 ASIETLQEIRDIGPVAAENIHAFFHQKNNAELINKLIHLGVHW 589
Score = 126 (49.4 bits), Expect = 8.1e-140, Sum P(2) = 8.1e-140
Identities = 22/46 (47%), Positives = 34/46 (73%)
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
GGK + +SKNT+Y++ G+ PG K EKA L I ++DE+ F+K++K
Sbjct: 627 GGKATSSVSKNTDYVIVGENPGSKYEKAKALGISLIDEEAFLKLLK 672
>UNIPROTKB|P15042 [details] [associations]
symbol:ligA species:83333 "Escherichia coli K-12"
[GO:0003911 "DNA ligase (NAD+) activity" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] HAMAP:MF_01588
InterPro:IPR001679 InterPro:IPR003583 InterPro:IPR004149
InterPro:IPR004150 InterPro:IPR013839 InterPro:IPR013840
InterPro:IPR018239 Pfam:PF01653 Pfam:PF03119 Pfam:PF03120
PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056 SMART:SM00278
SMART:SM00532 InterPro:IPR001357 Pfam:PF00533 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 EMBL:U74650 InterPro:IPR010994
SUPFAM:SSF47781 eggNOG:COG0272 HOGENOM:HOG000218459 KO:K01972
GO:GO:0003911 PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575 OMA:ENVRTIR
ProtClustDB:PRK07956 EMBL:M30255 EMBL:M24278 PIR:B65015
RefSeq:NP_416906.1 RefSeq:YP_490647.1 PDB:2OWO PDB:4GLX PDBsum:2OWO
PDBsum:4GLX ProteinModelPortal:P15042 SMR:P15042 DIP:DIP-10098N
IntAct:P15042 PaxDb:P15042 PRIDE:P15042
EnsemblBacteria:EBESCT00000002129 EnsemblBacteria:EBESCT00000015370
GeneID:12930678 GeneID:946885 KEGG:ecj:Y75_p2372 KEGG:eco:b2411
PATRIC:32120205 EchoBASE:EB0529 EcoGene:EG10534
BioCyc:EcoCyc:EG10534-MONOMER BioCyc:ECOL316407:JW2403-MONOMER
BioCyc:MetaCyc:EG10534-MONOMER EvolutionaryTrace:P15042
Genevestigator:P15042 Uniprot:P15042
Length = 671
Score = 1190 (424.0 bits), Expect = 2.7e-128, Sum P(2) = 2.7e-128
Identities = 242/578 (41%), Positives = 357/578 (61%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
++TEL+ L H Y++ D P I D +YD+L+ EL+++E K+PEL+T DS TQ VG
Sbjct: 7 QLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAAP 66
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M+SLDN F +E + FNKR+ + LK + + + ELK DG+AV++ YE
Sbjct: 67 LAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILYE 126
Query: 137 YGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L A+TRGD PL L+ + P LEVR EV + + F K+N+
Sbjct: 127 NGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINE 186
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G K F NPRNAAAG LRQL+P+I + L FF +GVG L G +P +H L +
Sbjct: 187 DARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQF 246
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
+K GL + ++ +++ FY K+ R L ++IDGVV K+N L+ Q++LGF +RA
Sbjct: 247 KKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVARA 306
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+A+KF ++E +T ++ + Q+GRTG ITPVA L+PV + G+ ++ ATLHN EI R
Sbjct: 307 PRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIER 366
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
++IGD VV+ R+G+VIP++ + +LS RP D++ P CP+C S + +E +ARC
Sbjct: 367 LGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEGEAVARC 426
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+G I C AQRK L+HF SR+AM++ G+G K+I++LV V T DL+K+ L L
Sbjct: 427 TGGLI-CGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGL 485
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R+ K A N++ A++K+K TTF+RF+YALGIR VGE TA LA YF LE + A+ E+
Sbjct: 486 ERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW 594
L +P +G F + +R +IS+L G++W
Sbjct: 546 LQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHW 583
Score = 90 (36.7 bits), Expect = 2.7e-128, Sum P(2) = 2.7e-128
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
G KV +SK T+ ++ G+ G KL KA +L I+++DE ++++
Sbjct: 625 GAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669
>UNIPROTKB|Q9KTD1 [details] [associations]
symbol:ligA "DNA ligase" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0003911 "DNA ligase (NAD+) activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006266 "DNA ligation" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
HAMAP:MF_01588 InterPro:IPR001679 InterPro:IPR003583
InterPro:IPR004149 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 InterPro:IPR018239 Pfam:PF01653 Pfam:PF03119
Pfam:PF03120 PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056
SMART:SM00278 SMART:SM00532 InterPro:IPR001357 Pfam:PF00533
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 KO:K01972 GO:GO:0003911 PANTHER:PTHR11107:SF5
TIGRFAMs:TIGR00575 HSSP:O87703 OMA:ENVRTIR ProtClustDB:PRK07956
PIR:F82258 RefSeq:NP_230618.1 ProteinModelPortal:Q9KTD1 SMR:Q9KTD1
GeneID:2614224 KEGG:vch:VC0971 PATRIC:20081040 Uniprot:Q9KTD1
Length = 669
Score = 1167 (415.9 bits), Expect = 1.7e-126, Sum P(2) = 1.7e-126
Identities = 245/583 (42%), Positives = 359/583 (61%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S ++ R+TEL+K LH H + YY+ D P I D +YD+L+ EL ++E +PEL++ DS +
Sbjct: 2 SDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLR 61
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + + V H M+SLDN F D ++ F +R+T+ + ++ + E K DG+AV
Sbjct: 62 VGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLAV 121
Query: 132 NLRYEYGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L +A+TRGD PL L P LEVR EV + K F
Sbjct: 122 SLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAGF 181
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
LN G K+F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH +
Sbjct: 182 EALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHYQ 241
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
+ GL IC E +++ + ++ FY+ I +R +L YEIDGVV K++ + Q++LG
Sbjct: 242 RFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERLG 301
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 302 FVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNA 361
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI R + +GDTVV+ R+G+VIP+I S +L RP ++K P CP+C S + +E
Sbjct: 362 DEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEGE 421
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARCSG I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 422 AVARCSGGLI-CQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRAG 480
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
L L+R+ K A N++ A+ K+K TT +F+YALGIR VGE TA LA +F +LE + +
Sbjct: 481 ELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQ 540
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW 594
A+ EQ + +P +G F Q ++ +I++L + GI W
Sbjct: 541 ASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITW 583
Score = 96 (38.9 bits), Expect = 1.7e-126, Sum P(2) = 1.7e-126
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
G KV +SKNT+ + G+ G KL KA +L I++ DE+ ++ +K
Sbjct: 624 GAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669
>TIGR_CMR|VC_0971 [details] [associations]
symbol:VC_0971 "DNA ligase" species:686 "Vibrio cholerae O1
biovar El Tor" [GO:0003911 "DNA ligase (NAD+) activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006266 "DNA ligation" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
HAMAP:MF_01588 InterPro:IPR001679 InterPro:IPR003583
InterPro:IPR004149 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 InterPro:IPR018239 Pfam:PF01653 Pfam:PF03119
Pfam:PF03120 PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056
SMART:SM00278 SMART:SM00532 InterPro:IPR001357 Pfam:PF00533
GO:GO:0046872 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0006310
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 KO:K01972 GO:GO:0003911 PANTHER:PTHR11107:SF5
TIGRFAMs:TIGR00575 HSSP:O87703 OMA:ENVRTIR ProtClustDB:PRK07956
PIR:F82258 RefSeq:NP_230618.1 ProteinModelPortal:Q9KTD1 SMR:Q9KTD1
GeneID:2614224 KEGG:vch:VC0971 PATRIC:20081040 Uniprot:Q9KTD1
Length = 669
Score = 1167 (415.9 bits), Expect = 1.7e-126, Sum P(2) = 1.7e-126
Identities = 245/583 (42%), Positives = 359/583 (61%)
Query: 12 SKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQH 71
S ++ R+TEL+K LH H + YY+ D P I D +YD+L+ EL ++E +PEL++ DS +
Sbjct: 2 SDVAQRLTELRKTLHEHGVRYYVEDAPSIPDAEYDRLMRELLELEAAHPELMSSDSPSLR 61
Query: 72 VGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAV 131
VG + + V H M+SLDN F D ++ F +R+T+ + ++ + E K DG+AV
Sbjct: 62 VGGRPLDAFESVVHEIPMLSLDNAFDDGELESFYRRMTDRIPAVQHSAFCCEPKLDGLAV 121
Query: 132 NLRYEYGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDF 191
+L YE G L +A+TRGD PL L P LEVR EV + K F
Sbjct: 122 SLLYENGVLTRAATRGDGTTGENITENVRTIKSIPLRLQGADFPTRLEVRGEVFMPKAGF 181
Query: 192 IKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE 251
LN G K+F NPRNAAAG LRQL+ KI + L F+A+ VG + G + +SH +
Sbjct: 182 EALNARALKKGEKQFVNPRNAAAGSLRQLDSKITAQRPLAFYAYSVGVIEGGELATSHYQ 241
Query: 252 LLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLG 311
+ GL IC E +++ + ++ FY+ I +R +L YEIDGVV K++ + Q++LG
Sbjct: 242 RFLQLKGWGLPICPETKLVTSLAEVKAFYQDILQRRQSLAYEIDGVVIKVDDIQLQERLG 301
Query: 312 FTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNE 371
F +RAPR+A+AYKF ++E LT + + Q+GRTG ITPVA L+PV + G+T++ ATLHN
Sbjct: 302 FVARAPRWAIAYKFPAQEELTLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLHNA 361
Query: 372 SEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
EI R + +GDTVV+ R+G+VIP+I S +L RP ++K P CP+C S + +E
Sbjct: 362 DEIERLGVMVGDTVVIRRAGDVIPQIVSVVLERRPENAKSIVFPTRCPVCQSDVERVEGE 421
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ARCSG I C AQRK L+HF SRKAM++ GLG K+IE+LV+ +V T DL+++
Sbjct: 422 AVARCSGGLI-CQAQRKEALKHFVSRKAMDVEGLGDKVIEQLVDREMVSTPADLFRLRAG 480
Query: 492 NLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFK 551
L L+R+ K A N++ A+ K+K TT +F+YALGIR VGE TA LA +F +LE + +
Sbjct: 481 ELTILERMGPKSAQNVIDALNKAKQTTLPKFLYALGIREVGEATALNLAQHFLSLEAIQQ 540
Query: 552 ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYW 594
A+ EQ + +P +G F Q ++ +I++L + GI W
Sbjct: 541 ASLEQFIEVPDVGVVVASHLQAFFAQDRNQQVINELLEQGITW 583
Score = 96 (38.9 bits), Expect = 1.7e-126, Sum P(2) = 1.7e-126
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
G KV +SKNT+ + G+ G KL KA +L I++ DE+ ++ +K
Sbjct: 624 GAKVTGSVSKNTDMVFAGEAAGSKLAKATELGIQVFDEQALIEFLK 669
>TIGR_CMR|SO_2896 [details] [associations]
symbol:SO_2896 "DNA ligase, NAD-dependent" species:211586
"Shewanella oneidensis MR-1" [GO:0003911 "DNA ligase (NAD+)
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR003583 InterPro:IPR004149 InterPro:IPR004150
InterPro:IPR013839 InterPro:IPR013840 InterPro:IPR018239
Pfam:PF01653 Pfam:PF03119 Pfam:PF03120 PIRSF:PIRSF001604
PROSITE:PS01055 PROSITE:PS01056 SMART:SM00278 SMART:SM00532
InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 EMBL:AE014299 GenomeReviews:AE014299_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 HOGENOM:HOG000218459 KO:K01972 GO:GO:0003911
PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575 HSSP:O87703 OMA:ENVRTIR
RefSeq:NP_718468.1 ProteinModelPortal:Q8ED70 SMR:Q8ED70
GeneID:1170586 KEGG:son:SO_2896 PATRIC:23525434
ProtClustDB:CLSK906920 Uniprot:Q8ED70
Length = 689
Score = 1136 (405.0 bits), Expect = 8.2e-123, Sum P(2) = 8.2e-123
Identities = 233/577 (40%), Positives = 353/577 (61%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENS 80
L + L+ HNI YY+ D P I+D++YD+L+ +LKK+E +YP+ + DS TQ VG +
Sbjct: 30 LSQSLNEHNIRYYVDDAPSITDSEYDRLMQQLKKLEAEYPQFVLADSPTQRVGGLALAKF 89
Query: 81 KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYL 140
+ + H M+SLDN F + D F+KR+++ + + + E K DG+AV++ Y G L
Sbjct: 90 EQITHLKPMLSLDNAFDEADFTAFHKRVSDRVG---QVSFCCEPKLDGLAVSILYRNGVL 146
Query: 141 KQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYH 200
++A+TRGD PL L PEL+EVR E + K F LN+
Sbjct: 147 ERAATRGDGTVGEDITENVKTIKSIPLRLRGNNYPELVEVRGEAFMPKAAFEALNERARL 206
Query: 201 LGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVG--ELRGMNMPSSHSELLNWYQK 258
K+F NPRNAAAG LRQL+ KI ++ L F+A+ +G E + +H E L +
Sbjct: 207 KDDKQFVNPRNAAAGSLRQLDSKITASRALSFYAYALGVVEPSSHELAKTHYEQLQQLKS 266
Query: 259 IGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPR 318
GL + E V +N++ +YK I +R +LP+EIDGVV K+N ++ Q+ LGF +++PR
Sbjct: 267 WGLPVSSEIKVCDELNQVFAYYKDILTRRSDLPFEIDGVVMKVNDIAQQQTLGFVAKSPR 326
Query: 319 FALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKN 378
+A+AYKF ++E +T ++ ++ Q+GRTG +TPVA LKPV + G+T++ ATLHN EI R
Sbjct: 327 WAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNADEIERLG 386
Query: 379 IQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSG 438
+ +GDTV++ R+G+VIP+I + + R D++ P CP+C S + +E +ARCSG
Sbjct: 387 VMVGDTVIIRRAGDVIPQIVAIVPERRSEDAQAIVFPQHCPVCGSLVERLEGEAVARCSG 446
Query: 439 SWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDR 498
+ C AQRK ++HF+SRKA++I G+G K++E+L++ +V + DL+K+ + LDR
Sbjct: 447 G-LFCEAQRKEAIKHFASRKALDIDGMGDKIVEQLIDKELVQSPADLFKLTASMMTMLDR 505
Query: 499 VSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQLL 558
+ K A N+ LAI+ +K TT RF+YALGIR VGE TA LA +F +L+ + AT EQL+
Sbjct: 506 MGMKSATNLALAIEAAKTTTLPRFLYALGIREVGEATAANLAAHFGSLDALRIATIEQLI 565
Query: 559 NIPKIGSTTVKAFIKFINQPLHRL-LISQLRDVGIYW 594
+ IG + F QP H L +I L G+ W
Sbjct: 566 EVEDIGEVVAQHVAHFFAQP-HNLEVIDALIAAGVNW 601
Score = 92 (37.4 bits), Expect = 8.2e-123, Sum P(2) = 8.2e-123
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
G KV +SKNT+ LV G+ G KL KA +L +K++ E + ++
Sbjct: 641 GAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLALL 685
>TIGR_CMR|CHY_1100 [details] [associations]
symbol:CHY_1100 "DNA ligase, NAD-dependent" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003911 "DNA ligase
(NAD+) activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR003583 InterPro:IPR004149 InterPro:IPR004150
InterPro:IPR013839 InterPro:IPR013840 InterPro:IPR018239
Pfam:PF01653 Pfam:PF03119 Pfam:PF03120 PIRSF:PIRSF001604
PROSITE:PS01055 PROSITE:PS01056 SMART:SM00278 SMART:SM00532
InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006260 GO:GO:0006281
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 KO:K01972 GO:GO:0003911 PANTHER:PTHR11107:SF5
TIGRFAMs:TIGR00575 HOGENOM:HOG000218458 OMA:ENVRTIR
RefSeq:YP_359946.1 ProteinModelPortal:Q3AD38 SMR:Q3AD38
STRING:Q3AD38 GeneID:3728712 KEGG:chy:CHY_1100 PATRIC:21275338
BioCyc:CHYD246194:GJCN-1099-MONOMER Uniprot:Q3AD38
Length = 664
Score = 1107 (394.7 bits), Expect = 3.6e-112, P = 3.6e-112
Identities = 229/576 (39%), Positives = 349/576 (60%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL+ LH HN YY+ D P ISD +YD++L EL +E++YPE +T DS +Q VG
Sbjct: 9 RIEELRALLHYHNYRYYVLDQPEISDAEYDRMLRELISLEQQYPEFITPDSPSQRVGGEV 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M SLDN F ED+ F++R+ + L + +EY ELK DG+A++L YE
Sbjct: 69 AKEFREVAHLKPMYSLDNAFGPEDLKEFDRRVRSLLP-GQEVEYEVELKIDGLAISLVYE 127
Query: 137 YGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L + +TRG+ PL L + P LLEVR E + K+ F +LN+
Sbjct: 128 NGVLVRGATRGNGTTGEDITANVKTIKAIPLKL--RNPIPLLEVRGEAYMPKESFARLNE 185
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G F NPRNAAAG LRQL+PK+ + L F + +GE++G P + +EL+ W
Sbjct: 186 QREERGEPLFANPRNAAAGSLRQLDPKVTAERDLSAFMYAIGEVQGYE-PKTQAELMEWL 244
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++G + V + ++ +I + + + KRF+LPY IDG+V K+N L+ Q+ LGFT+++
Sbjct: 245 SELGFKVNPYREVFNNIDDVINYCQSWHEKRFSLPYVIDGLVIKVNSLAQQEALGFTAKS 304
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++ A T++K I +++GRTG++TP A+ +PV + G T+TRA+LHNE I
Sbjct: 305 PRWAIAYKFPAEIAETRLKDIIVRVGRTGVLTPTAIFEPVSLAGTTVTRASLHNEDYIRE 364
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD + V ++G +IP++ + R K F +P+ CP+C K + + RC
Sbjct: 365 KDIRIGDIIRVQKAGEIIPEVVEVVKEKRTGAEKEFVMPDTCPVCQGKAVRLPGEAAWRC 424
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
+ + C AQ K G+ HF+SR AMNI GLG + E L+ A ++ DLY ++ + + RL
Sbjct: 425 TNA--SCPAQLKEGIVHFASRGAMNIEGLGPAVAELLLEAGLIHNYADLYYLSAEEVARL 482
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
R+ K A N++ AI+KSK + R IY LGIR VGE A++LA +FK L+ + A EE+
Sbjct: 483 PRMGKKSAENLINAIEKSKQNSLERLIYGLGIRLVGEKAARDLAVHFKELDKLIAAGEEE 542
Query: 557 LLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI 592
++ IP +G + F Q + LI +L+ G+
Sbjct: 543 IMAIPSVGPKMAASIKAFFAQKENLELIEKLKAAGV 578
Score = 124 (48.7 bits), Expect = 0.00037, P = 0.00037
Identities = 52/204 (25%), Positives = 91/204 (44%)
Query: 449 AGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNIL 508
A L + S+ + + +GKK E L+NA L ++ + +RL V K A ++
Sbjct: 469 ADLYYLSAEEVARLPRMGKKSAENLINAIEKSKQNSLERLIYGLGIRL--VGEKAARDLA 526
Query: 509 LAIQK-SKLTTFSRFIYALGIRHVGETTAKELANYF---KNLECM--FKATEEQLLNIPK 562
+ ++ KL + I VG A + +F +NLE + KA + +
Sbjct: 527 VHFKELDKLIAAGEE-EIMAIPSVGPKMAASIKAFFAQKENLELIEKLKAAGVNTKYLAE 585
Query: 563 IGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGGKVVNFISKNTNYLVKGQKP 622
+ ++ + L + + + + GGKV + +SK T+Y+V G+ P
Sbjct: 586 VRDNRLEGLTFVLTGTLSSFTRKEAEQLIL-------SLGGKVSSSVSKKTSYVVVGEDP 638
Query: 623 GKKLEKAIKLNIKILDEKNFVKIV 646
G KL KA +L I IL E+ F ++V
Sbjct: 639 GSKLTKAKELGIPILTEEEFRQMV 662
>TIGR_CMR|GSU_0890 [details] [associations]
symbol:GSU_0890 "DNA ligase, NAD-dependent" species:243231
"Geobacter sulfurreducens PCA" [GO:0003911 "DNA ligase (NAD+)
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR003583 InterPro:IPR004149 InterPro:IPR004150
InterPro:IPR013839 InterPro:IPR013840 InterPro:IPR018239
Pfam:PF01653 Pfam:PF03119 Pfam:PF03120 PIRSF:PIRSF001604
PROSITE:PS01055 PROSITE:PS01056 SMART:SM00278 SMART:SM00532
InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 HOGENOM:HOG000218459 KO:K01972 GO:GO:0003911
PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575 HSSP:O87703 OMA:ENVRTIR
RefSeq:NP_951947.1 ProteinModelPortal:Q74ER9 GeneID:2687161
KEGG:gsu:GSU0890 PATRIC:22024545 ProtClustDB:CLSK828084
BioCyc:GSUL243231:GH27-877-MONOMER Uniprot:Q74ER9
Length = 670
Score = 1103 (393.3 bits), Expect = 9.7e-112, P = 9.7e-112
Identities = 244/616 (39%), Positives = 360/616 (58%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
RV L+ EL RHN YY D P I+D +YD L EL +E ++P+L DS TQ VG
Sbjct: 9 RVAALRTELERHNRLYYAEDRPEITDAEYDLLFRELVDLETRFPDLAAPDSPTQRVGGAP 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIE--YIAELKFDGIAVNLR 134
+ + V H M+SL+N F+D ++ F+ R+ L L ++E Y+ E K DG+AV L
Sbjct: 69 LDKFEQVTHRIPMLSLENAFTDVEIADFDDRVKRFLGLHGDVEIDYVCEPKMDGLAVELV 128
Query: 135 YEYGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDFIKL 194
YE G L STRGD PL L + PPELLEVR EV + F +L
Sbjct: 129 YERGILTVGSTRGDGVVGENVTHNLKTVRGIPLRLRCEQPPELLEVRGEVYLPLAAFQRL 188
Query: 195 NKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLN 254
N R G F NPRNAAAG +RQL+ +I + L F + GE+RG + ++ +E L+
Sbjct: 189 NAQREEEGEPPFANPRNAAAGSIRQLDSRITARRPLAIFCYAPGEVRGASF-AAQTEFLD 247
Query: 255 WYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTS 314
+ GL + + GV +++ +Y+++ +R +LPYEIDGVV K++ + Q++LG S
Sbjct: 248 RIGEWGLPVNPLIRPVKGVAEILAYYREMTERRDSLPYEIDGVVVKVDSFALQRELGEKS 307
Query: 315 RAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI 374
R+PR+A+A KF ++A+T ++ I +GRTG+ITP A L+PV + G+T++RATLHN E+
Sbjct: 308 RSPRWAVAVKFPPRQAVTVVEDIVPSVGRTGVITPTANLRPVEVSGVTVSRATLHNWEEM 367
Query: 375 YRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIA 434
RK+I+IGDTVV+ R+G+VIP + + R + IP +CP C S+++ I +
Sbjct: 368 ERKDIRIGDTVVIERAGDVIPAVVKVLTEKRSGSERPLPIPAVCPECGSEVVKIPDEVAV 427
Query: 435 RCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLL 494
RC G + C AQ + + HF+SR AM++ GLG+K IE+L+ +V DLY + +
Sbjct: 428 RCMG--LSCPAQIRESIIHFASRDAMDMEGLGEKYIEQLLRLGLVKNVADLYTLTKDQFM 485
Query: 495 RLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATE 554
+ DR+ +KLA N+L AI+ SK SRFI+ALGIRHVGE TAK LA F ++E + +ATE
Sbjct: 486 QFDRMGDKLAENLLNAIEASKQRELSRFIFALGIRHVGEHTAKLLAGAFGSIENLERATE 545
Query: 555 EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGGKVVNFISKNTN 614
E+LL+I ++G ++ I F +R I ++ G+ GG+ T
Sbjct: 546 EELLSIREVGPQVARSIITFFRNEGNRETIRRMFKAGVRPTAEEKKVGGRFTGKTFVFTG 605
Query: 615 YLVKGQKPG--KKLEK 628
L + +P K +EK
Sbjct: 606 ALTRFSRPEAQKMVEK 621
Score = 127 (49.8 bits), Expect = 0.00018, P = 0.00018
Identities = 52/212 (24%), Positives = 91/212 (42%)
Query: 444 IAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLR-LDRVSNK 502
+ + A L + + M +G K+ E L+NA +L + F +R + + K
Sbjct: 469 LVKNVADLYTLTKDQFMQFDRMGDKLAENLLNAIEASKQRELSRFIFALGIRHVGEHTAK 528
Query: 503 LANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN------LECMFKATEEQ 556
L +I+ + T L IR VG A+ + +F+N + MFKA
Sbjct: 529 LLAGAFGSIENLERATEEEL---LSIREVGPQVARSIITFFRNEGNRETIRRMFKAGVRP 585
Query: 557 LLNIPKIGST-TVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTKGGKVVNFISKNTNY 615
K+G T K F+ L R + + + +GG +SK T+Y
Sbjct: 586 TAEEKKVGGRFTGKTFV--FTGALTRFSRPEAQKM-------VEKEGGHAAGSVSKKTDY 636
Query: 616 LVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
+V G + G KL+KA +L +++L E F+ +++
Sbjct: 637 VVAGAEAGSKLDKARQLGVRVLTEDEFLAMLE 668
>TIGR_CMR|DET_0596 [details] [associations]
symbol:DET_0596 "DNA ligase, NAD-dependent" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003911 "DNA ligase (NAD+)
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR003583 InterPro:IPR004149 InterPro:IPR004150
InterPro:IPR013839 InterPro:IPR013840 InterPro:IPR018239
Pfam:PF01653 Pfam:PF03119 Pfam:PF03120 PIRSF:PIRSF001604
PROSITE:PS01055 PROSITE:PS01056 SMART:SM00278 SMART:SM00532
InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 EMBL:CP000027 GenomeReviews:CP000027_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 HOGENOM:HOG000218459 KO:K01972 GO:GO:0003911
PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575 OMA:ENVRTIR
RefSeq:YP_181338.1 ProteinModelPortal:Q3Z8W1 STRING:Q3Z8W1
GeneID:3230074 KEGG:det:DET0596 PATRIC:21608263
ProtClustDB:CLSK2516600 BioCyc:DETH243164:GJNF-597-MONOMER
Uniprot:Q3Z8W1
Length = 677
Score = 963 (344.1 bits), Expect = 1.1e-103, Sum P(2) = 1.1e-103
Identities = 213/587 (36%), Positives = 334/587 (56%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ L++E++RHN YY+ DNP ISD++YD LL LK++EE +PEL+T DS TQ VG
Sbjct: 8 IENLRREINRHNQLYYVQDNPEISDSEYDALLRRLKELEEAHPELVTADSPTQRVGAEPL 67
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYI--AELKFDGIAVNLRY 135
+ V+H + ++SL N FSD ++ + R+ KL N + E K DG+AV L Y
Sbjct: 68 KAFGIVNHPYPLLSLANAFSDTELEAWYLRVK---KLLGNAAFQIDCEPKMDGLAVALTY 124
Query: 136 EYGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
G +TRGD PL PP + E+R EV + K+ F KLN
Sbjct: 125 RNGKFTTGATRGDGFQGENITRNLRTIHSIPLNTEEDAPP-VFEIRGEVYLPKEGFAKLN 183
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNW 255
+ R GL F NPRNAAAG LRQL+P + + L F + +G +P SH ++L +
Sbjct: 184 RERADKGLSLFANPRNAAAGSLRQLDPSVTAERPLDIFIYALGYAEDSLLPDSHWQILEY 243
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
+ ++G I +++ + + E+Y+++ R +LPYE DGVV+K++ +S Q+KLG R
Sbjct: 244 FSRLGFKINPRNRLVNTLEEAKEYYREMAENRDSLPYEADGVVFKVDSVSLQQKLGDAGR 303
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
PR+A+AYKF +++ T ++ I I +GRTG + P A+L+PV + G+ + +A+LHNE +I
Sbjct: 304 EPRWAIAYKFPAEQVTTLLRKIGISVGRTGTLNPYAILEPVNVGGVVVKQASLHNEDDIL 363
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKI------PNI----CPICNSKI 425
RK+I+ GDTVV+ R+G VIP++ + +L+ R +SK F + P + CP+C +I
Sbjct: 364 RKDIREGDTVVIQRAGEVIPEVVAPVLAKRSPESKPFSMEETLFNPKLSRPACPVCGGEI 423
Query: 426 IYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDL 485
+ C+ + C AQ + L+HF SR M+I G+G+ + L +V DL
Sbjct: 424 YRPAGEAMHYCAN--VSCPAQFERQLEHFVSRGTMDIRGIGESLSVILAQEGLVKNVSDL 481
Query: 486 YKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN 545
Y + +LL+L R+ K A+NI+ AI SK R I+ LGIRHVG TA L++ + +
Sbjct: 482 YYLTAADLLKLPRMGEKSADNIIKAIADSKSRPLDRVIFGLGIRHVGNETAALLSSRYGD 541
Query: 546 LECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI 592
+ + A ++L IP IG+ + + ++ + +I +L G+
Sbjct: 542 IWALAGAGLDELQTIPDIGAKIASSIKAYFSEEKNIAVIRRLETAGV 588
Score = 84 (34.6 bits), Expect = 1.1e-103, Sum P(2) = 1.1e-103
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVK 647
GG + ++K T YLV G G KL KA + +K L E+ F+ +++
Sbjct: 630 GGTAKDNVTKATRYLVVGADAGSKLAKARSMGVKELSEQEFINMLE 675
>TIGR_CMR|BA_0306 [details] [associations]
symbol:BA_0306 "DNA ligase, NAD-dependent" species:198094
"Bacillus anthracis str. Ames" [GO:0003911 "DNA ligase (NAD+)
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR003583 InterPro:IPR004149 InterPro:IPR004150
InterPro:IPR013839 InterPro:IPR013840 InterPro:IPR018239
Pfam:PF01653 Pfam:PF03119 Pfam:PF03120 PIRSF:PIRSF001604
PROSITE:PS01055 PROSITE:PS01056 SMART:SM00278 SMART:SM00532
InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
InterPro:IPR010994 SUPFAM:SSF47781 eggNOG:COG0272 KO:K01972
GO:GO:0003911 PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575
RefSeq:NP_842855.1 RefSeq:YP_026572.1 RefSeq:YP_052606.1
HSSP:O87703 ProteinModelPortal:Q81ZG1 SMR:Q81ZG1 IntAct:Q81ZG1
DNASU:1084819 EnsemblBacteria:EBBACT00000012592
EnsemblBacteria:EBBACT00000018293 EnsemblBacteria:EBBACT00000020619
GeneID:1084819 GeneID:2821092 GeneID:2850693 KEGG:ban:BA_0306
KEGG:bar:GBAA_0306 KEGG:bat:BAS0292 HOGENOM:HOG000218458
OMA:ENVRTIR ProtClustDB:PRK07956 BioCyc:BANT260799:GJAJ-334-MONOMER
BioCyc:BANT261594:GJ7F-343-MONOMER Uniprot:Q81ZG1
Length = 669
Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
Identities = 218/592 (36%), Positives = 349/592 (58%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL+ L+ N Y++ DNP +SD +YD+ + EL K+E + PE +++DS + VG
Sbjct: 9 RIEELRDLLNTFNYQYHVLDNPSVSDAEYDRNMQELIKLEAENPEFMSEDSPSIRVGGTV 68
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ + V H M+SL N F++ D+ F++R+ + N+ YI ELK DG+AV+L YE
Sbjct: 69 LDIFEKVTHKSPMLSLGNAFNEGDLRDFDRRVRQGID-DANVRYICELKIDGLAVSLHYE 127
Query: 137 YGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G Q +TRGD PL LN + LE R E + K+ F+KLN+
Sbjct: 128 KGRFIQGATRGDGVTGEDITQNLKTIKAIPLRLNEEVT---LEARGEAYMPKRSFVKLNE 184
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
+ G F NPRNAAAG +RQL+PKI + L F +G+ + +PS HSE L++
Sbjct: 185 EKEQNGEDVFANPRNAAAGSIRQLDPKIAAKRNLSMFVYGLANVEEKTIPS-HSESLDYL 243
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
++G + ++I + ++ KR +L YEIDG+V K++ ++ Q+ LG T+++
Sbjct: 244 GELGFKTNPNRRTCETIEEVIAYVEEWQEKRPHLDYEIDGIVIKVDDVALQESLGTTAKS 303
Query: 317 PRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYR 376
PR+A+AYKF ++E +T++ I + +GRTG++TP A L+PV + G + RA+LHNE I
Sbjct: 304 PRWAIAYKFPAEEVVTRLTGIELSVGRTGVVTPTAELEPVRVAGTIVRRASLHNEDLIRE 363
Query: 377 KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARC 436
K+I+IGD VVV ++G++IP++ + I R + + +P CP C S+++ +E + RC
Sbjct: 364 KDIRIGDYVVVKKAGDIIPEVVNVIFDKRTGGEEEYHMPTHCPACESELVRLEEEVALRC 423
Query: 437 SGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRL 496
C AQ + GL HF SR AMNI GLG+++I +L +A+ + T DLY + + LL+L
Sbjct: 424 INP--TCPAQIREGLIHFVSRNAMNIDGLGERVITQLFDADYIRTFADLYSLTKEQLLQL 481
Query: 497 DRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKATEEQ 556
+R K A N++ AI+ SK + R ++ LGIRHVG A+ A +F+ ++ + KATEE+
Sbjct: 482 ERFGEKSATNLVQAIENSKENSLERLLFGLGIRHVGAKAARTFAEHFETMDALVKATEEE 541
Query: 557 LLNIPKIGSTTVKAFIKFI-NQPLHRLLISQLRDVGIYWLNNPNTKGGKVVN 607
L I +IG ++ + + N+ + LL Q ++ G+ N KG K+ +
Sbjct: 542 LKAINEIGEKMAQSVVAYFDNEDVLELL-QQFKEYGV----NMTYKGIKIAD 588
>UNIPROTKB|P63973 [details] [associations]
symbol:ligA "DNA ligase" species:1773 "Mycobacterium
tuberculosis" [GO:0000287 "magnesium ion binding" evidence=IDA]
[GO:0003911 "DNA ligase (NAD+) activity" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0006266 "DNA
ligation" evidence=IDA;IMP] [GO:0040007 "growth" evidence=IMP]
HAMAP:MF_01588 InterPro:IPR001679 InterPro:IPR003583
InterPro:IPR004149 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 InterPro:IPR018239 Pfam:PF01653 Pfam:PF03119
Pfam:PF03120 PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056
SMART:SM00278 SMART:SM00532 InterPro:IPR001357 Pfam:PF00533
GO:GO:0005829 GO:GO:0005886 GO:GO:0040007 GO:GO:0005618
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0000287 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
EMBL:BX842581 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994
SUPFAM:SSF47781 eggNOG:COG0272 HOGENOM:HOG000218459 KO:K01972
GO:GO:0003911 TIGRFAMs:TIGR00575 OMA:ENVRTIR ProtClustDB:PRK07956
PIR:A70857 RefSeq:NP_217530.1 RefSeq:NP_337609.2
RefSeq:YP_006516472.1 PDB:1ZAU PDB:3SGI PDBsum:1ZAU PDBsum:3SGI
ProteinModelPortal:P63973 SMR:P63973 PRIDE:P63973
EnsemblBacteria:EBMYCT00000001007 EnsemblBacteria:EBMYCT00000069264
GeneID:13317815 GeneID:887354 GeneID:923055 KEGG:mtc:MT3094
KEGG:mtu:Rv3014c KEGG:mtv:RVBD_3014c PATRIC:18128568
TubercuList:Rv3014c BindingDB:P63973 EvolutionaryTrace:P63973
PANTHER:PTHR11107:SF8 Uniprot:P63973
Length = 691
Score = 874 (312.7 bits), Expect = 3.3e-98, Sum P(2) = 3.3e-98
Identities = 212/586 (36%), Positives = 322/586 (54%)
Query: 21 LKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG-GEN 79
L +E+ H YY+ D PIISD ++D+LL L+ +EE++PEL T DS TQ VG G +
Sbjct: 20 LAEEVREHQFRYYVRDAPIISDAEFDELLRRLEALEEQHPELRTPDSPTQLVGGAGFATD 79
Query: 80 SKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGY 139
+ V H +M+SLDN F+ +++ + RI E+ + Y+ ELK DG+A++L Y G
Sbjct: 80 FEPVDHLERMLSLDNAFTADELAAWAGRIHAEVGDAAH--YLCELKIDGVALSLVYREGR 137
Query: 140 LKQASTRGDXXXXXXXXXXXXXXXXXP--LVLNIKYP-PELLEVRCEVLIYKKDFIKLNK 196
L +ASTRGD P L YP PE+LEVR EV DF LN
Sbjct: 138 LTRASTRGDGRTGEDVTLNARTIADVPERLTPGDDYPVPEVLEVRGEVFFRLDDFQALNA 197
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
G F NPRN+AAG LRQ +P + + L HG+G + G + H L
Sbjct: 198 SLVEEGKAPFANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPATLHQAYLA-L 256
Query: 257 QKIGLSICGEYSV---LSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
+ GL + ++ L+GV + I+++ + R + +EIDGVV K++ ++ Q++LG T
Sbjct: 257 RAWGLPVSEHTTLATDLAGVRERIDYWGE---HRHEVDHEIDGVVVKVDEVALQRRLGST 313
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
SRAPR+A+AYK+ +EA TK+ I + +GRTG ITP A + PV + G T+ +ATLHN SE
Sbjct: 314 SRAPRWAIAYKYPPEEAQTKLLDIRVNVGRTGRITPFAFMTPVKVAGSTVGQATLHNASE 373
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKII-YIESNL 432
I RK + IGDTVV+ ++G+VIP++ ++ LR + F +P CP C S + E +
Sbjct: 374 IKRKGVLIGDTVVIRKAGDVIPEVLGPVVELRDGSEREFIMPTTCPECGSPLAPEKEGDA 433
Query: 433 IARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN 492
RC + C Q + + H +SR ++I LG + L+ A ++ +L+ + ++
Sbjct: 434 DIRCPNAR-GCPGQLRERVFHVASRNGLDIEVLGYEAGVALLQAKVIADEGELFALTERD 492
Query: 493 LLRLDRVSNKL----ANN--ILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNL 546
LLR D K AN +L+ + K+K R + AL IRHVG T A+ LA F +L
Sbjct: 493 LLRTDLFRTKAGELSANGKRLLVNLDKAKAAPLWRVLVALSIRHVGPTAARALATEFGSL 552
Query: 547 ECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI 592
+ + A+ +QL + +G T A ++ HR ++ + R G+
Sbjct: 553 DAIAAASTDQLAAVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGV 598
Score = 121 (47.7 bits), Expect = 3.3e-98, Sum P(2) = 3.3e-98
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 601 KGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIV 646
+GGK +SK TNY+V G PG K +KA++L + ILDE F +++
Sbjct: 638 RGGKAAGSVSKKTNYVVAGDSPGSKYDKAVELGVPILDEDGFRRLL 683
>TIGR_CMR|ECH_0301 [details] [associations]
symbol:ECH_0301 "DNA ligase, NAD-dependent" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003911 "DNA ligase
(NAD+) activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR004149 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 Pfam:PF01653 Pfam:PF03119 Pfam:PF03120
PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056 SMART:SM00532
InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006260 GO:GO:0006281
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 KO:K01972 OMA:NPKNSDM GO:GO:0003911
PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575 HOGENOM:HOG000218458
RefSeq:YP_507122.1 ProteinModelPortal:Q2GHG1 STRING:Q2GHG1
GeneID:3927385 KEGG:ech:ECH_0301 PATRIC:20576107
ProtClustDB:CLSK2558359 BioCyc:ECHA205920:GJNR-301-MONOMER
Uniprot:Q2GHG1
Length = 676
Score = 872 (312.0 bits), Expect = 7.7e-97, Sum P(2) = 7.7e-97
Identities = 213/596 (35%), Positives = 328/596 (55%)
Query: 9 INFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSL 68
++ K + +L K++ H++ YY+ DNP ISD +YD+L + I +P+L +
Sbjct: 2 VDQEKAKLELDKLNKQIQHHDVLYYVQDNPEISDAEYDELCRKRNLILNAFPKLTQSNDY 61
Query: 69 TQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN--IEYIAELKF 126
++G V H KM SLDN F+ +DV F R L + N I ELK
Sbjct: 62 QNNIGSSPDTKFAKVKHEEKMFSLDNAFNQQDVEKFITRTKKFLNINDNQSIPLSCELKI 121
Query: 127 DGIAVNLRYEYGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLI 186
DG++ ++ Y+ G + QASTRG+ P +++ P+LLEVR E+ I
Sbjct: 122 DGLSFSVIYKKGEIYQASTRGNGYFGENITTNVKTIKNLPHIIH--NAPDLLEVRGEIYI 179
Query: 187 YKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMP 246
+ DFI+LN G F NPRNAAAG +RQL+ I + L +F + + +
Sbjct: 180 DRCDFIQLNND----G-NNFANPRNAAAGSVRQLDHNITAQRKLKYFMYTIVNTACL--- 231
Query: 247 SSHSELLNWYQ-KIGLSICGEYSVLS-GVNKLIEFYKKINIKRFNLPYEIDGVVYKINCL 304
+ ELL YQ KI E+++ + + + FY ++ R N+ Y+IDG++YK+N +
Sbjct: 232 -TQEELL--YQLKIWGFCVNEHTITTDNIEEAFNFYNQVYNNRSNINYDIDGIIYKVNDI 288
Query: 305 STQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITIT 364
+Q LG TS++PR+A+AYKF + EA T++ I+IQIGRTG++TP+A L P+ I G+ +T
Sbjct: 289 KSQHILGTTSKSPRWAIAYKFPAAEAKTQLNKISIQIGRTGVLTPIAELSPINIGGVIVT 348
Query: 365 RATLHNESEIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSK 424
RA+LHN++EI RK+I+ GD V+V R+G+VIP+I +LR + F P CP C S
Sbjct: 349 RASLHNKNEIERKDIREGDYVIVKRAGDVIPQIVDVDKNLRTQELTKFVFPTTCPSCGSS 408
Query: 425 IIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVD 484
+ + C+G + C Q ++HF S+ A NIIG GKK + ++ D
Sbjct: 409 VYQAKQEASIYCTGE-LFCKDQILEKIKHFVSKDAFNIIGFGKKQLLFFYEQRLITNITD 467
Query: 485 LYKINFK--NL-LRLDRV---SNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKE 538
++ + K N ++L+ + K +N+ AI SK+ + FI+ALGIR +G+ AK
Sbjct: 468 IFTLEEKISNSDVKLESLHGWGEKSMSNLFSAINNSKVISLENFIFALGIRFIGKYIAKI 527
Query: 539 LANYFKNLEC----MFKAT--EEQLLNIPKIGSTTVKAFIKFINQPLHRL-LISQL 587
LAN+F + E M K E+ LNI +IGS T+ + F +QP H L +I+ L
Sbjct: 528 LANHFSSYETWYNEMLKLAQNEDYSLNIQQIGSKTIGSLKMFFSQP-HNLNMINDL 582
Score = 110 (43.8 bits), Expect = 7.7e-97, Sum P(2) = 7.7e-97
Identities = 32/117 (27%), Positives = 55/117 (47%)
Query: 524 YALGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLL 583
Y+L I+ +G T L +F + + L+ I T +++ I+ + +
Sbjct: 551 YSLNIQQIGSKTIGSLKMFFSQPHNLNMIND--LVKHLTITDTQSSSYLSLIHGKII-VF 607
Query: 584 ISQLRDVGIYWLN-NPNTKGGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDE 639
+L + T G KV + +SKNT++L+ G PG K +KA LN++IL E
Sbjct: 608 TGELSSMSRSEAKIRSETAGAKVSSSLSKNTDFLIAGNNPGSKYKKAQSLNVQILTE 664
>TIGR_CMR|SPO_1680 [details] [associations]
symbol:SPO_1680 "DNA ligase, NAD-dependent" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003911 "DNA ligase (NAD+) activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR004149 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 InterPro:IPR018239 Pfam:PF01653 Pfam:PF03119
Pfam:PF03120 PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056
SMART:SM00532 InterPro:IPR001357 Pfam:PF00533 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0006260 GO:GO:0006281
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 HOGENOM:HOG000218459 KO:K01972 GO:GO:0003911
PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575 HSSP:O87703 OMA:ENVRTIR
RefSeq:YP_166919.1 ProteinModelPortal:Q5LST6 PRIDE:Q5LST6
GeneID:3192682 KEGG:sil:SPO1680 PATRIC:23376685
ProtClustDB:CLSK933607 Uniprot:Q5LST6
Length = 739
Score = 856 (306.4 bits), Expect = 1.1e-93, Sum P(2) = 1.1e-93
Identities = 210/549 (38%), Positives = 302/549 (55%)
Query: 25 LHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVH 84
L + N+AY+ D P ISD YD L +IE ++P L DS ++ VG GE V
Sbjct: 17 LAQANLAYHTLDAPEISDADYDALKQRNAEIEARFPHLKRPDSPSEQVGARPGEGFSKVS 76
Query: 85 HTFKMMSLDNGFSDEDVIIFNKRITNELKLTKN--IEYIAELKFDGIAVNLRYEYGYLKQ 142
H +MMSL N F D DV F++ I L L + Y AE K DG++++LRYE G L Q
Sbjct: 77 HAVRMMSLGNAFDDADVADFDRSIRKYLGLDVETALAYTAEPKIDGLSLSLRYEQGVLVQ 136
Query: 143 ASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLG 202
A+TRGD P I+ PE+LEVR EV + DF LN + G
Sbjct: 137 AATRGDGEVGENVTANARTIADIPA--RIEGAPEVLEVRGEVYMSHADFAALNTRQEAEG 194
Query: 203 LKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLS 262
K F NPRNAAAG LRQL+ I + + L FFA+ GEL + + + + +G
Sbjct: 195 GKLFANPRNAAAGSLRQLDAAITRARPLRFFAYSWGEL-SEPLAETQMQAIERLAGLGFQ 253
Query: 263 ICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALA 322
+ ++ +I Y+ I +R L Y+IDGVVYK++ L Q +LGF S PR+A+A
Sbjct: 254 TNPLTRRCADLDAMIAHYRDIEAQRATLGYDIDGVVYKLDDLGLQARLGFRSTTPRWAIA 313
Query: 323 YKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEI-------- 374
+KF ++ A T+++AI+IQ+GRTG ++PVA L PV + G+ ++ ATLHNE I
Sbjct: 314 HKFPAELAWTRLEAIDIQVGRTGALSPVARLTPVTVGGVVVSNATLHNEDYIAGRDSRGQ 373
Query: 375 -YR--KNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
R K+I++GD V V+R+G+VIPKI L+ RP + F+ P CP C S I E +
Sbjct: 374 EIRDGKDIRVGDWVQVYRAGDVIPKIADVDLNKRPEGANPFEFPEQCPECGSPAIREEGD 433
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFK 491
+ RC+G I C AQ L+HF SR A +I GLG K +E+ + D++++ +
Sbjct: 434 AVRRCTGGVI-CPAQAVEKLKHFVSRAAFDIEGLGAKQVEQFHADGWIREPADIFELRSR 492
Query: 492 NLLRLDRVSN------KLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKN 545
L ++ N K A N+ AI + +R I+ALGIRHVGE AK+L+ ++++
Sbjct: 493 YGEGLQQLKNREGWGEKSATNLFQAIDDKRRIPLARLIFALGIRHVGEVGAKDLSLHYRD 552
Query: 546 LECMFKATE 554
+ M A +
Sbjct: 553 WDAMAAALD 561
Score = 96 (38.9 bits), Expect = 1.1e-93, Sum P(2) = 1.1e-93
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKG 648
G KV +SK T+ LV G G KL+ A L I+ LDE ++K+++G
Sbjct: 692 GAKVAGSVSKKTDLLVAGPGAGSKLKTAESLGIETLDEDGWLKLIEG 738
>TIGR_CMR|NSE_0500 [details] [associations]
symbol:NSE_0500 "DNA ligase, NAD-dependent" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003911 "DNA ligase
(NAD+) activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR004149 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 InterPro:IPR018239 Pfam:PF01653 Pfam:PF03119
Pfam:PF03120 PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056
SMART:SM00532 InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872
GO:GO:0006260 GO:GO:0006281 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
EMBL:CP000237 GenomeReviews:CP000237_GR InterPro:IPR010994
SUPFAM:SSF47781 eggNOG:COG0272 KO:K01972 GO:GO:0003911
PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575 HOGENOM:HOG000218458
OMA:ENVRTIR RefSeq:YP_506384.1 ProteinModelPortal:Q2GDR2
STRING:Q2GDR2 PRIDE:Q2GDR2 GeneID:3931734 KEGG:nse:NSE_0500
PATRIC:22681049 ProtClustDB:CLSK2527991
BioCyc:NSEN222891:GHFU-520-MONOMER Uniprot:Q2GDR2
Length = 670
Score = 729 (261.7 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
Identities = 203/654 (31%), Positives = 337/654 (51%)
Query: 20 ELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKD-SL--TQHVGLVG 76
E KKE+ ++ D+ + E I+++Y +LL + SL VG
Sbjct: 2 EAKKEIQELYEKLLRHNKKYYQDDSPEITDAEYDSIKDRYLKLLEANPSLGFPVVVGYPA 61
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E + V H M+SL N FS+E+++ + ++ L L +E++ E K DG++ + RY
Sbjct: 62 SEKFQKVKHLSPMLSLRNIFSEEELVEYIEKTKRFLNLKSALEFLCEPKIDGVSFSARYV 121
Query: 137 YGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G L +TRGD P+ I P+LLEVR EV F+ +
Sbjct: 122 NGKLVSCATRGDGKIGENIIDNMKVINGFPI--EIMDVPDLLEVRGEV------FLDHDT 173
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSE-LLNW 255
++ L+ F+NPRNAAAG LRQLNP+I + L +FA+ ++ G+ H E +L++
Sbjct: 174 FQT---LEGFSNPRNAAAGSLRQLNPEITNERNLQYFAYSASKIDGIE----HQEDVLHF 226
Query: 256 YQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSR 315
G S V +++ FY + +R + Y+IDG+VYK+N L +LG S
Sbjct: 227 LSGRGFMTNPLRLASSKVPEIMSFYDSVYRRRSQIKYDIDGLVYKVNDLKLHARLGTLSD 286
Query: 316 APRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIY 375
APR+A+A+KF S A T ++ I + +GRTGIITPVA LKP+ I G+ I+RA+L+NE E+
Sbjct: 287 APRWAIAHKFPSHRAKTILEKIKLSVGRTGIITPVAHLKPITIGGVVISRASLYNEDELE 346
Query: 376 RKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIAR 435
RK+I+ GD V+V R+G+VIPK+ +S R N + F P+ CP C+S +I + R
Sbjct: 347 RKDIREGDLVIVERAGDVIPKVLEVDISYRTNQER-FIFPDKCPSCSSTLIRKNNEAATR 405
Query: 436 CSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKN--L 493
C+ S +C Q ++H S +A +I G+G I + + D+++++ +
Sbjct: 406 CNNSK-KCPEQVIQQIKHLVSAQAFDIDGIGTSHISFFIEKGFISEPADIFRLDKHRDEI 464
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLE------ 547
+ D K NIL I+ S+ + +FI++LGI+++GE TA LA FK+
Sbjct: 465 KKYDGWGEKSVENILKNIKNSRKISLEKFIFSLGIKNIGEKTAYMLAQQFKSFANWFDKM 524
Query: 548 CMFK---ATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRD-VGI--YWLNNPNTK 601
M K TE+++ N+ +GS ++ + F + + ++ L + V I + +N +
Sbjct: 525 SMLKDDTQTEDEIRNLDGMGSCICESLLDFFSDSDNCNMVKSLSNHVMITDHTVNIGGSL 584
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGFSTETKI 655
GK F+ T + ++ + ++KA + + + K +V G +K+
Sbjct: 585 SGK--KFVFTGTLLSITREEAKEIIKKAGGIVVNSIS-KQIDYVVAGEKAGSKL 635
Score = 287 (106.1 bits), Expect = 2.6e-29, Sum P(2) = 2.6e-29
Identities = 77/226 (34%), Positives = 116/226 (51%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGG 77
+ EL ++L RHN YY D+P I+D +YD + K+ E P L VG
Sbjct: 7 IQELYEKLLRHNKKYYQDDSPEITDAEYDSIKDRYLKLLEANPSL----GFPVVVGYPAS 62
Query: 78 ENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEY 137
E + V H M+SL N FS+E+++ + ++ L L +E++ E K DG++ + RY
Sbjct: 63 EKFQKVKHLSPMLSLRNIFSEEELVEYIEKTKRFLNLKSALEFLCEPKIDGVSFSARYVN 122
Query: 138 GYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKY 197
G L +TRGD P+ I P+LLEVR EV F+ + +
Sbjct: 123 GKLVSCATRGDGKIGENIIDNMKVINGFPI--EIMDVPDLLEVRGEV------FLDHDTF 174
Query: 198 RYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGM 243
+ L+ F+NPRNAAAG LRQLNP+I + L +FA+ ++ G+
Sbjct: 175 QT---LEGFSNPRNAAAGSLRQLNPEITNERNLQYFAYSASKIDGI 217
Score = 116 (45.9 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGFST 651
GG VVN ISK +Y+V G+K G KL KA +L I I++EK ++ G +T
Sbjct: 611 GGIVVNSISKQIDYVVAGEKAGSKLAKANELGIAIIEEKTLIEFTNGNNT 660
Score = 38 (18.4 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 444 IAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYK--INFKN 492
I ++ G+ S K ++ + G+K KL AN + A+ K I F N
Sbjct: 606 IIKKAGGIVVNSISKQIDYVVAGEKAGSKLAKANELGIAIIEEKTLIEFTN 656
>TIGR_CMR|CJE_0689 [details] [associations]
symbol:CJE_0689 "DNA ligase, NAD-dependent" species:195099
"Campylobacter jejuni RM1221" [GO:0003911 "DNA ligase (NAD+)
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR003583 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 InterPro:IPR018239 Pfam:PF01653 Pfam:PF03120
PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056 SMART:SM00278
SMART:SM00532 InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 EMBL:CP000025
GenomeReviews:CP000025_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
InterPro:IPR010994 SUPFAM:SSF47781 eggNOG:COG0272 KO:K01972
GO:GO:0003911 PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575
HOGENOM:HOG000218458 OMA:ENVRTIR ProtClustDB:PRK07956
RefSeq:YP_178701.1 HSSP:P26996 ProteinModelPortal:Q5HVI4
STRING:Q5HVI4 GeneID:3231989 KEGG:cjr:CJE0689 PATRIC:20043106
BioCyc:CJEJ195099:GJC0-706-MONOMER Uniprot:Q5HVI4
Length = 647
Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
Identities = 195/566 (34%), Positives = 309/566 (54%)
Query: 31 AYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMM 90
AYY D P+ SD +YD L+ EL+ EE+ + ++KDS TQ + K + H +M
Sbjct: 19 AYYEKDEPLASDEEYDALIRELRVFEEQNKDEISKDSPTQKIAPTIQSEFKKIAHLKRMW 78
Query: 91 SLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDXX 150
S+++ F + ++ + KR K KN + E KFDG ++NL YE G L +TRGD
Sbjct: 79 SMEDVFDESELRAWAKRA----KCEKN--FFIEPKFDGASLNLLYENGKLVSGATRGDGE 132
Query: 151 XXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPR 210
P NI Y E +E+R EV+I K DF K+N+ R L F NPR
Sbjct: 133 VGEDITLNVFEIENIPK--NIAYK-ERIEIRGEVVILKDDFEKINEKRALLNQSLFANPR 189
Query: 211 NAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVL 270
NAA+G LRQL+ I K + L F+ GVGE +N + HSE++ + +++G +
Sbjct: 190 NAASGSLRQLDTSITKERNLKFYPWGVGE-NTLNF-TKHSEVMQFIRELGFLKDDFVRLC 247
Query: 271 SGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEA 330
+ ++++++ Y ++ + R P +DG+V +++ L+ ++LG+T + P+F A+KF + E
Sbjct: 248 ANLDEVLKAYDELLVLREKKPMMMDGMVVRVDDLALCEELGYTVKFPKFMAAFKFPALEK 307
Query: 331 LTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRS 390
T++ +N+Q+GR+G ITPVA+L+PV +DG+ + ATLHN EI R +++I D V V RS
Sbjct: 308 TTRLIGVNLQVGRSGAITPVAVLEPVNLDGVVVKSATLHNFDEIARLDVKINDFVSVIRS 367
Query: 391 GNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAG 450
G+VIPKIT R P +CP C S+++ E LI +C I+C +
Sbjct: 368 GDVIPKITKVFKERREGLEMEISRPKLCPTCQSELLD-EGTLI-KCQN--IDCEDRLVNS 423
Query: 451 LQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLA 510
+ HF S+K +NI GLG+ ++E L + T ++ + F + L+ K NN+L A
Sbjct: 424 IIHFVSKKCLNIDGLGENIVELLYKHKKITTLESIFHLKFNDFEGLEGFKEKKINNLLNA 483
Query: 511 IQKSKLTTFSRFIYALGIRHVGETTAKELA-----NYFK-------NLECMFKATEEQLL 558
I++++ RFI ALGI H+GE AK+L+ ++K NLE + L
Sbjct: 484 IEQARECELFRFITALGIEHIGEVAAKKLSLSFGKEWYKQSFEAYANLEGFGEQMALSLC 543
Query: 559 NIPKIGSTTVKAFIKFINQPLHRLLI 584
++ T + F K +N + +L I
Sbjct: 544 EFTRVNHTRIDEFYKLLNLKIEKLEI 569
>TIGR_CMR|APH_0138 [details] [associations]
symbol:APH_0138 "DNA ligase, NAD-dependent" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003911 "DNA ligase (NAD+)
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] HAMAP:MF_01588 InterPro:IPR001679
InterPro:IPR004149 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 InterPro:IPR018239 Pfam:PF01653 Pfam:PF03119
Pfam:PF03120 PIRSF:PIRSF001604 PROSITE:PS01055 PROSITE:PS01056
SMART:SM00532 InterPro:IPR001357 Pfam:PF00533 GO:GO:0046872
GO:GO:0006260 GO:GO:0006281 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR010994 SUPFAM:SSF47781
RefSeq:YP_504763.1 ProteinModelPortal:Q2GLI8 STRING:Q2GLI8
GeneID:3929997 KEGG:aph:APH_0138 PATRIC:20948848 eggNOG:COG0272
HOGENOM:HOG000218459 KO:K01972 OMA:NPKNSDM ProtClustDB:CLSK747278
BioCyc:APHA212042:GHPM-173-MONOMER GO:GO:0003911
PANTHER:PTHR11107:SF5 TIGRFAMs:TIGR00575 Uniprot:Q2GLI8
Length = 677
Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
Identities = 202/600 (33%), Positives = 316/600 (52%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVG-LV 75
R+ +L +L H++ Y+ +D P ISD +YD L+ E +++ EK+PEL + +G L
Sbjct: 9 RLADLNAQLKLHDVLYHEHDAPEISDAQYDALVQEKRELLEKFPELSAYNDYEGVIGALT 68
Query: 76 GGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEY-IA-ELKFDGIAVNL 133
+ H M+SL+N F+ +DV F R+ L + + IA E K DG++
Sbjct: 69 VDARLPKIAHREPMLSLENSFTIQDVEKFISRVKRSLNMDPEVSITIACEPKIDGLSFAA 128
Query: 134 RYEYGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPELLEVRCEVLIYKKDFIK 193
YE G L + +TRG+ P I PE+LEVR E+ ++ DF K
Sbjct: 129 LYEKGSLIRVATRGNGHLGEDITNTAKVIRKLPH--KIANAPEVLEVRGEIYMHHSDFEK 186
Query: 194 LNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELL 253
L + F NPRNAAAG +RQLNPKI + + L + A+ + + + +L
Sbjct: 187 LKD------VCNFANPRNAAAGSIRQLNPKIAEERNLRYVAYCIVNSALASQEAILKQLA 240
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
W G E ++ + F+ ++ R L Y+IDG+VYK+N QK LG T
Sbjct: 241 EW----GFCTHTEVLFADNMDDALSFHTRMYNTRSTLGYDIDGIVYKVNDTHLQKLLGST 296
Query: 314 SRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESE 373
S+ PR+A A+KF S EA+TK++ I++Q+GRTG+ITP+A L+P+ I G ++RA+LHN +E
Sbjct: 297 SKYPRWATAHKFPSTEAITKLRDISVQVGRTGVITPIAELEPINIGGTLVSRASLHNLNE 356
Query: 374 IYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDS--KIFKIPNICPICNSKIIYIESN 431
I RK+I+IGD+V+V R+G VIP++ + R N + + + P+ CP C S +
Sbjct: 357 IARKDIRIGDSVIVKRAGEVIPQVVGVDHTARCNSAVPEEYVFPSHCPSCGSTLSRAPGE 416
Query: 432 LIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLY----K 487
+ RC+ + C AQ ++HF SR +NI+GLG+K IE NA+ + D++ K
Sbjct: 417 VAMRCTAE-LSCQAQVLERVKHFVSRDGLNIVGLGEKQIEFFCNASYISNVADIFSLREK 475
Query: 488 INFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLE 547
I+ NL K ++ AI S S FI+ALGIR +G+ AK +A ++++
Sbjct: 476 ISHMNLSAEHGWGEKSIALLINAINASTTVKLSNFIFALGIRFIGKGAAKLIAEHYRSYS 535
Query: 548 CMFKATE-----EQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNN-PNTK 601
+A E NI IG ++++ F + L + Q + + LN NT+
Sbjct: 536 AWVRAMTSLANGEDPDNIHGIGLKSIESLRAFFSSE-DNLRVLQTLEEKLNILNEIANTE 594
>DICTYBASE|DDB_G0282299 [details] [associations]
symbol:DDB_G0282299 "DNA ligase" species:44689
"Dictyostelium discoideum" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003911 "DNA ligase
(NAD+) activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001679 InterPro:IPR003583
InterPro:IPR004150 InterPro:IPR013839 InterPro:IPR013840
InterPro:IPR018239 Pfam:PF01653 Pfam:PF03120 PIRSF:PIRSF001604
PROSITE:PS01056 SMART:SM00278 SMART:SM00532 InterPro:IPR001357
dictyBase:DDB_G0282299 EMBL:AAFI02000047 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 SUPFAM:SSF52113 InterPro:IPR010994 SUPFAM:SSF47781
eggNOG:COG0272 GO:GO:0003911 RefSeq:XP_001134548.1
ProteinModelPortal:Q1ZXG5 STRING:Q1ZXG5 EnsemblProtists:DDB0232267
GeneID:8623504 KEGG:ddi:DDB_G0282299 InParanoid:Q1ZXG5 OMA:DINRSPR
Uniprot:Q1ZXG5
Length = 843
Score = 341 (125.1 bits), Expect = 3.0e-44, Sum P(3) = 3.0e-44
Identities = 91/245 (37%), Positives = 144/245 (58%)
Query: 273 VNKLIEFYKKINIK-RFNLPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEAL 331
+ + EF K+ +K R N ++IDG+V K+N ++ Q+ LG +R+PR+A AYKF +K +
Sbjct: 396 IKNIEEFIKEWELKKRENHNWDIDGIVIKVNDINIQRILGDINRSPRWAFAYKFGAKSEI 455
Query: 332 TKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSG 391
+ IK I +Q+G++G ITPVAL++P+ + G+TI+RATL+N S I + NI+IG V++ R+G
Sbjct: 456 STIKDIVLQVGKSGRITPVALVEPIQVHGVTISRATLNNLSYINKLNIKIGSKVLIERAG 515
Query: 392 NVIPKITSSI--------LSLRPNDSK----IFKIP---NI-CPICNSKIIYIESNLIAR 435
+VIPKI +++ + N++ +FK NI CP CN K S L+ R
Sbjct: 516 DVIPKIITNLDDNINNTNTNTNTNNTNNIESLFKCNENGNILCP-CNLK-----SELVNR 569
Query: 436 CSGSWIECIAQRKAG-----LQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI-N 489
C+A+ + F +KAMNI G+GK I+ L+ ++ DLY++
Sbjct: 570 VGYVDYFCVAENCPNQLVQQISWFVDKKAMNIQGVGKSQIQVLLENQLIEDFGDLYELYQ 629
Query: 490 FKNLL 494
FK L
Sbjct: 630 FKEKL 634
Score = 190 (71.9 bits), Expect = 3.0e-44, Sum P(3) = 3.0e-44
Identities = 59/195 (30%), Positives = 92/195 (47%)
Query: 7 KKINFSKLSFRVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKD 66
KK N +++ + EL+ +++R+N YY ISD +YD+L L+ +E+K+ + +
Sbjct: 58 KKNNNNEI-IEIEELRNKINRYNDLYYNKSKSEISDFEYDKLFKRLEILEKKFNQQTITN 116
Query: 67 SLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL--KLT-------KN 117
+ + H +M+SL N +S +D+I F +I L K T +
Sbjct: 117 QVGAPISDYSNNRGLKFRHKSRMLSLQNTYSKDDIIAFKNKIEKFLLKKQTSQQQQPQQQ 176
Query: 118 IEYIAELKFDGIAVNLRYEYGYLKQASTRGDXXXXXXXXXXXXXXXXXPLVLNIKYPPEL 177
IEY ELK+DGI ++L YE LK+ TRG+ P + N+ P
Sbjct: 177 IEYSLELKYDGIGISLVYENNKLKRVLTRGNGEIGEDITTNALQFI--PSLKNLLTLPSN 234
Query: 178 LEVRCEVLIYK-KDF 191
L V LI K KDF
Sbjct: 235 LTVFILFLILKYKDF 249
Score = 165 (63.1 bits), Expect = 1.9e-24, Sum P(3) = 1.9e-24
Identities = 62/229 (27%), Positives = 107/229 (46%)
Query: 385 VVVHRSGNVIPKITSSILSLRPNDSKIFKIP---NI-CPICNSKIIYIESNLIARCSGSW 440
++ + N+ T++ + N +FK NI CP CN K S L+ R
Sbjct: 521 IITNLDDNINNTNTNTNTNNTNNIESLFKCNENGNILCP-CNLK-----SELVNRVGYVD 574
Query: 441 IECIAQRKAG-----LQHFSSRKAMNIIGLGKKMIEKLVNANIVVTAVDLYKI-NFKN-L 493
C+A+ + F +KAMNI G+GK I+ L+ ++ DLY++ FK L
Sbjct: 575 YFCVAENCPNQLVQQISWFVDKKAMNIQGVGKSQIQVLLENQLIEDFGDLYELYQFKEKL 634
Query: 494 LRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVGETTAKELANYFKNLECMFKAT 553
L L S+ NN+L +I+ SK + + A+GI +G + +K L+ F++L+ + +
Sbjct: 635 LSLKGFSHTKVNNLLESIEDSKSRGLASLLCAIGIPGIGSSNSKILSEKFQSLDNLINSP 694
Query: 554 EEQLLNIPK-IGSTTVKAFIKFINQPLHRLLISQLRDVGIYWLNNPNTK 601
+ + + +G T ++ F N PL + Q D I+ + N K
Sbjct: 695 SIESIELQSGLGRQTSESIFNFFN-PLDQFE-KQYLDYLIFKFKSNNLK 741
Score = 105 (42.0 bits), Expect = 2.1e-35, Sum P(3) = 2.1e-35
Identities = 42/132 (31%), Positives = 61/132 (46%)
Query: 103 IFNKRITNELKLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDXXXXXXXXXXXXXX 162
+ K+ + + + + IEY ELK+DGI ++L YE LK+ TRG+
Sbjct: 162 LLKKQTSQQQQPQQQIEYSLELKYDGIGISLVYENNKLKRVLTRGNGEIGEDITTNALQF 221
Query: 163 XXXPLVLNIKYPPELLEVRCEVLIYK-KDF-----IKLNK-YRYHLG-LK-------KFT 207
P + N+ P L V LI K KDF + LNK Y + LK ++
Sbjct: 222 I--PSLKNLLTLPSNLTVFILFLILKYKDFEIRGEVVLNKSYLKIINKLKLDNNDQHQYK 279
Query: 208 NPRNAAAGILRQ 219
N RN +GILR+
Sbjct: 280 NTRNIVSGILRK 291
Score = 56 (24.8 bits), Expect = 3.0e-44, Sum P(3) = 3.0e-44
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 604 KVVNFISKNTNYLVKGQKPG-KKLEKAIKLNIKILDE 639
KV + I+ T L+ G+KP KL KA +L I+I E
Sbjct: 800 KVQSSINSFTQILLIGEKPAIAKLNKANELGIQIKSE 836
>UNIPROTKB|P25772 [details] [associations]
symbol:ligB species:83333 "Escherichia coli K-12"
[GO:0003911 "DNA ligase (NAD+) activity" evidence=IEA;IDA]
[GO:0006266 "DNA ligation" evidence=IDA] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
HAMAP:MF_01587 InterPro:IPR004150 InterPro:IPR013839
InterPro:IPR013840 InterPro:IPR018239 InterPro:IPR020923
Pfam:PF01653 Pfam:PF03120 PROSITE:PS01055 PROSITE:PS01056
SMART:SM00532 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006260 GO:GO:0006281 EMBL:L10328
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR010994 SUPFAM:SSF47781 eggNOG:COG0272 KO:K01972
GO:GO:0003911 EMBL:M84400 PIR:A65166 RefSeq:NP_418104.2
RefSeq:YP_491787.1 ProteinModelPortal:P25772 SMR:P25772
IntAct:P25772 PRIDE:P25772 DNASU:948164
EnsemblBacteria:EBESCT00000004868 EnsemblBacteria:EBESCT00000018252
GeneID:12933573 GeneID:948164 KEGG:ecj:Y75_p3527 KEGG:eco:b3647
PATRIC:32122781 EchoBASE:EB1310 EcoGene:EG11334
HOGENOM:HOG000267776 OMA:NARSKVA ProtClustDB:PRK08097
BioCyc:EcoCyc:EG11334-MONOMER BioCyc:ECOL316407:JW3622-MONOMER
BioCyc:MetaCyc:EG11334-MONOMER Genevestigator:P25772 Uniprot:P25772
Length = 560
Score = 117 (46.2 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 30/108 (27%), Positives = 56/108 (51%)
Query: 290 LPYEIDGVVYKINCLSTQKKLGFTSRAPRFALAYKFLSKEALTKIKAINIQIGRTGIITP 349
LP+ DGVV + + + +A + +A+K+ + ++KAI +G++G I+
Sbjct: 272 LPFVTDGVVVRA-AKEPESRHWLPGQA-EWLVAWKYQPVAQVAEVKAIQFAVGKSGKISV 329
Query: 350 VALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVVVHRSGNVIPKI 397
VA L PV++D + R + + +I GD ++V +G IP+I
Sbjct: 330 VASLAPVMLDDKKVQRVNIGSVRRWQEWDIAPGDQILVSLAGQGIPRI 377
Score = 56 (24.8 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 125 KFDGIAVNLRYEYGYLKQASTRGD 148
K DG+AV L Y G L +A +RG+
Sbjct: 124 KVDGVAVTLVYRDGKLNKAISRGN 147
Score = 37 (18.1 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 18 VTELKKELHRHNIAYYLYDNPIISDNKYDQL 48
++ L++++ + + Y+ + D YDQL
Sbjct: 34 ISRLQQQIKQWDDDYWKEGKSEVEDGVYDQL 64
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 655 638 0.00093 120 3 11 22 0.38 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 614 (65 KB)
Total size of DFA: 310 KB (2159 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 53.62u 0.08s 53.70t Elapsed: 00:00:58
Total cpu time: 53.63u 0.08s 53.71t Elapsed: 00:00:59
Start: Thu Aug 15 14:32:20 2013 End: Thu Aug 15 14:33:19 2013