RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11423
(655 letters)
>d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA
ligase {Bacillus stearothermophilus [TaxId: 1422]}
Length = 312
Score = 227 bits (579), Expect = 8e-70
Identities = 129/309 (41%), Positives = 189/309 (61%), Gaps = 7/309 (2%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R EL++ L+R+ YY+ D P + D +YD+L+ EL IEE+YPEL T DS TQ +G
Sbjct: 8 RAAELRELLNRYGYEYYVLDRPSVPDAEYDRLMQELIAIEEQYPELKTSDSPTQRIGGPP 67
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
E + V H MMSL N F + D+ F++R+ E Y+ EL DG+AV++RYE
Sbjct: 68 LEAFRKVAHRVPMMSLANAFGEGDLRDFDRRVRQE---VGEAAYVCELAIDGLAVSVRYE 124
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
GY Q +TRGDG GE+IT N+ I +PL L P LE R E + K F++LN+
Sbjct: 125 DGYFVQGATRGDGTTGEDITENLKTIRSLPLRLK---EPVSLEARGEAFMPKASFLRLNE 181
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G + F NPRNAAAG LRQL+PK+ ++ L F +G+ + + + S HSE L++
Sbjct: 182 ERKARGEELFANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALGIAS-HSEALDYL 240
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
Q +G + E + ++++I F + + KR LPYEIDG+V K++ + Q+ LG T+++
Sbjct: 241 QALGFKVNPERRRCANIDEVIAFVSEWHDKRPQLPYEIDGIVIKVDSFAQQRALGATAKS 300
Query: 317 PRFALAYKF 325
PR+A+AYKF
Sbjct: 301 PRWAIAYKF 309
>d1ta8a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA
ligase {Enterococcus faecalis [TaxId: 1351]}
Length = 313
Score = 222 bits (565), Expect = 9e-68
Identities = 122/309 (39%), Positives = 180/309 (58%), Gaps = 6/309 (1%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R EL+K+L++++ YY+ D P + D YD+L EL IE ++P+L+T DS TQ VG
Sbjct: 10 RAQELRKQLNQYSHEYYVKDQPSVEDYVYDRLYKELVDIETEFPDLITPDSPTQRVGGKV 69
Query: 77 GENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRYE 136
+ H M SL++GFS ED+ F++R+ + K + Y ELK DG+A++LRYE
Sbjct: 70 LSGFEKAPHDIPMYSLNDGFSKEDIFAFDERVRKAIG--KPVAYCCELKIDGLAISLRYE 127
Query: 137 YGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLNK 196
G + +TRGDG +GENIT N+ + +P P +EVR E + K+ F+ LN+
Sbjct: 128 NGVFVRGATRGDGTVGENITENLRTVRSVP---MRLTEPISVEVRGECYMPKQSFVALNE 184
Query: 197 YRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHFFAHGVGELRGMNMPSSHSELLNWY 256
R G F NPRNAAAG LRQL+ KI + L+ F + V + M + E L
Sbjct: 185 EREENGQDIFANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMKAKT-QFEALEEL 243
Query: 257 QKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFTSRA 316
IG E + ++++ + ++ + KR LPYEIDG+V K+N + Q +LGFT +A
Sbjct: 244 SAIGFRTNPERQLCQSIDEVWAYIEEYHEKRSTLPYEIDGIVIKVNEFALQDELGFTVKA 303
Query: 317 PRFALAYKF 325
PR+A+AYKF
Sbjct: 304 PRWAIAYKF 312
>d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent
DNA ligase {Thermus filiformis [TaxId: 276]}
Length = 314
Score = 209 bits (531), Expect = 9e-63
Identities = 125/312 (40%), Positives = 182/312 (58%), Gaps = 10/312 (3%)
Query: 17 RVTELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVG 76
R+ EL+ + HN YY+ +P ISD +YD+LL ELK++EE++PE + DS T+ VG
Sbjct: 9 RINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPEFKSPDSPTEQVGARP 68
Query: 77 GENS-KYVHHTFKMMSLDNGFSDEDVIIFNKRITNELKLTKNIEYIAELKFDGIAVNLRY 135
E + + V H +M SLDN F+ E+V+ F +R+ + Y E K DG++V L Y
Sbjct: 69 LEPTFRPVRHPTRMYSLDNAFTYEEVLAFEERLER--EAEAPSLYTVEHKVDGLSV-LYY 125
Query: 136 EYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIKYPPELLEVRCEVLIYKKDFIKLN 195
E G ++ GDG +GE +T N+ I IP +K P+ LEVR EV + + F++LN
Sbjct: 126 EEG--VWSTGSGDGEVGEEVTQNLLTIPTIPR--RLKGVPDRLEVRGEVYMPIEAFLRLN 181
Query: 196 KYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILH--FFAHGVGELRGMNMPSSHSELL 253
+ G K F NPRNAAAG LRQ +P++ + L F+A G+G + S ELL
Sbjct: 182 EELEERGEKVFKNPRNAAAGSLRQKDPRVTAKRGLRATFYALGLGLGLEESGLKSQYELL 241
Query: 254 NWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPYEIDGVVYKINCLSTQKKLGFT 313
W ++ G + Y G + E Y++ +R LP+E DGVV K++ L+ +LG+T
Sbjct: 242 LWLKEKGFPVEHCYEKALGAEGVEEVYRRGLAQRHALPFEADGVVLKLDDLTLWGELGYT 301
Query: 314 SRAPRFALAYKF 325
+RAPRFALAYKF
Sbjct: 302 ARAPRFALAYKF 313
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3
{Thermus filiformis [TaxId: 276]}
Length = 181
Score = 96.9 bits (240), Expect = 7e-24
Identities = 61/182 (33%), Positives = 107/182 (58%), Gaps = 4/182 (2%)
Query: 413 KIPNICPICNSKIIYIESNLIARCSGSWIECIAQRKAGLQHFSSRKAMNIIGLGKKMIEK 472
+ P CP C +++ + RC C A+R ++H++SRKAM+I GLG+K+IE+
Sbjct: 1 RWPEACPECGHRLVKEGK--VHRCPNP--LCPAKRFEAIRHYASRKAMDIEGLGEKLIER 56
Query: 473 LVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQKSKLTTFSRFIYALGIRHVG 532
L+ +V DLY + ++LL L+R+ K A N+L I++SK R +YALG+ VG
Sbjct: 57 LLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQIEESKHRGLERLLYALGLPGVG 116
Query: 533 ETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDVGI 592
E A+ LA F ++ + +A+ E+L+ + ++G T +A ++ + P R L+ +L++ G+
Sbjct: 117 EVLARNLARRFGTMDRLLEASLEELIEVEEVGELTARAILETLKDPAFRDLVRRLKEAGV 176
Query: 593 YW 594
Sbjct: 177 SM 178
>d1dgsa2 b.40.4.6 (A:315-400) NAD+-dependent DNA ligase {Thermus
filiformis [TaxId: 276]}
Length = 86
Score = 89.9 bits (223), Expect = 1e-22
Identities = 35/84 (41%), Positives = 56/84 (66%)
Query: 327 SKEALTKIKAINIQIGRTGIITPVALLKPVLIDGITITRATLHNESEIYRKNIQIGDTVV 386
++E T++ + Q+GRTG +TPV +L+PV I+G ++R TLHNES I +I+IGD V+
Sbjct: 1 AEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGSEVSRVTLHNESYIEELDIRIGDWVL 60
Query: 387 VHRSGNVIPKITSSILSLRPNDSK 410
VH++G VIP++ + R +
Sbjct: 61 VHKAGGVIPEVLRVLKERRTGKER 84
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 62.3 bits (151), Expect = 7e-13
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 510 AIQ-KSKLTTFSRFIYAL-GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTT 567
+ K + SR L ++ V +T ++ L F +LE + A+ E L P +G
Sbjct: 4 LLMEKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQK 63
Query: 568 VKAFIKFINQPLHRL 582
+ +++P ++
Sbjct: 64 ARRLFDVLHEPFLKV 78
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus
thermophilus [TaxId: 274]}
Length = 92
Score = 54.7 bits (132), Expect = 4e-10
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 602 GGKVVNFISKNTNYLVKGQKPGKKLEKAIKLNIKILDEKNFVKIVKGFSTE 652
G KV + +S+ T+YLV G+ PG KLEKA L + L E+ ++++ + +
Sbjct: 34 GAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLEARTGK 84
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015
{Pyrococcus furiosus [TaxId: 2261]}
Length = 68
Score = 50.2 bits (120), Expect = 8e-09
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 516 LTTFSRFIYAL-GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKF 574
LT R + G+ HV T A+ L +F ++E +F A+ +L+ + IG K +
Sbjct: 2 LTLAERQRLIVEGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRV 61
Query: 575 INQP 578
I P
Sbjct: 62 ITAP 65
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum
pernix [TaxId: 56636]}
Length = 70
Score = 48.7 bits (116), Expect = 3e-08
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 523 IYAL-GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQP 578
+Y L +G TA+ + F +LE F A++ ++ + IG + K + P
Sbjct: 12 LYILQSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKILMTP 68
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 56
Score = 44.7 bits (106), Expect = 5e-07
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 527 GIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKF 574
I VG + L Y L+ + A+ E++ +P I +
Sbjct: 6 TIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWS 53
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 41.7 bits (98), Expect = 7e-06
Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 526 LGIRHVGETTAKELANYFKNLECMFKATEEQLLNIPKIGSTTVKAFIKFINQPLHRLL 583
L + V + L ++ KN+ + ++++L +I + K FI+ ++
Sbjct: 6 LKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSIL-GNAANAKQLYDFIHTSFAEVV 62
>d1a0ia2 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-terminal
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 239
Score = 34.9 bits (79), Expect = 0.022
Identities = 24/206 (11%), Positives = 58/206 (28%), Gaps = 35/206 (16%)
Query: 119 EYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNI-----KY 173
IAE+K+DG+ N+ + +R + I H+ + +
Sbjct: 27 YLIAEIKYDGVRGNICVDNTANSYWLSRV----SKTIPALEHLNGFDVRWKRLLNDDRCF 82
Query: 174 PPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILR----QLNPKINKNKI 229
+ + E+++ DF + + + P
Sbjct: 83 YKDGFMLDGELMVKGVDFNTGSGLLRTKWTDTKNQEFHEELFVEPIRKKDKVPFKLHTGH 142
Query: 230 LHFFAHGVGELRGMNMPSSHS-----------ELLNWYQKIGLSICGEYS---VLSGVNK 275
LH + + L + +L Q+ I + + + + +
Sbjct: 143 LHIKLYAILPLHIVESGEDCDVMTLLMQEHVKNMLPLLQEYFPEIEWQAAESYEVYDMVE 202
Query: 276 LIEFYKK--------INIKRFNLPYE 293
L + Y++ + +K Y+
Sbjct: 203 LQQLYEQKRAEGHEGLIVKDPMCIYK 228
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 31.6 bits (72), Expect = 0.033
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 460 MNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513
+ G+ ++KL A T + K L+ + +S A+ IL K
Sbjct: 13 LEQCGINANDVKKLEEAGF-HTVEAVAYAPKKELINIKGISEAKADKILAEAAK 65
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 64
Score = 29.7 bits (67), Expect = 0.16
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 464 GLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513
G+ ++KL + + TA + K+LL + +S A+ +L +
Sbjct: 10 GITMADVKKLRESGL-HTAEAVAYAPRKDLLEIKGISEAKADKLLNEAAR 58
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 60
Score = 28.9 bits (65), Expect = 0.20
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 460 MNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513
++ G+G EKLV A + + + L ++ +S K A +++ +
Sbjct: 2 TDLPGVGPSTAEKLVEAGY-IDFMKIATATVGELTDIEGISEKAAAKMIMGARD 54
>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 876
Score = 31.9 bits (72), Expect = 0.25
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 121 IAELKFDGIAVNLRYEYGYLKQ 142
+A LRYEYG Q
Sbjct: 174 MATEGIPAWGYGLRYEYGIFAQ 195
>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
{Escherichia coli [TaxId: 562]}
Length = 796
Score = 32.0 bits (72), Expect = 0.26
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 121 IAELKFDGIAVNLRYEYGYLKQ 142
+A + L Y+YG +Q
Sbjct: 126 MATVGQSATGYGLNYQYGLFRQ 147
>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 824
Score = 31.9 bits (72), Expect = 0.27
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 121 IAELKFDGIAVNLRYEYGYLKQ 142
+A L +RYE+G Q
Sbjct: 136 MATLGLAAYGYGIRYEFGIFNQ 157
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967
{Thermus thermophilus [TaxId: 274]}
Length = 65
Score = 28.5 bits (64), Expect = 0.42
Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 10/50 (20%)
Query: 528 IRHVGETTAKELANY--FKNLECMFKATEEQLLNIPKIGSTTVKAFIKFI 575
+ +G A+ + + +E LL + IG T++ ++
Sbjct: 22 LPGIGPVLARRIVEGRPYARVE--------DLLKVKGIGPATLERLRPYL 63
Score = 24.7 bits (54), Expect = 8.8
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 551 KATEEQLLNIPKIGSTTVKAFIKF 574
+A+ E+L+ +P IG + ++
Sbjct: 13 EASLEELMALPGIGPVLARRIVEG 36
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 84
Score = 28.1 bits (63), Expect = 0.70
Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 53 KKIEEKYPELLTKDSLTQHVGLVGGENSKYVHHTFKMMSLDNGFSDEDVIIFNKRITNEL 112
+ IE++Y +LL++ E S Y F ++++ E++I ++++ EL
Sbjct: 5 EVIEQRYHQLLSRYIAEL------TETSLYQAQKFSRKTIEHQIPPEEIISIHRKVLKEL 58
Query: 113 KLTKNIEYIAELKF 126
+ + L F
Sbjct: 59 YPSLPEDVFHSLDF 72
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 61
Score = 27.3 bits (61), Expect = 0.97
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 460 MNIIGLGKKMIEKLVNANIVVTAVDLYKINFKNLLRLDRVSNKLANNILLAIQK 513
++ G+G EKL A T + + L + +S A I+ A +K
Sbjct: 4 EDLPGVGPATAEKLREAGY-DTLEAIAVASPIELKEVAGISEGTALKIIQAARK 56
>d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit
{Yeast (Candida albicans) [TaxId: 5476]}
Length = 245
Score = 29.0 bits (64), Expect = 1.8
Identities = 18/188 (9%), Positives = 39/188 (20%), Gaps = 17/188 (9%)
Query: 113 KLTKNIEYIAELKFDGIAVNLRYEYGYLKQASTRGDGNIGENITTNIHIIHKIPLVLNIK 172
+ +Y K DG+ L K + K
Sbjct: 55 ETLMQKDYFVCEKTDGLRCLLFLINDPDKGEGVFLVTRENDYYFIPNIHFPLSVNETREK 114
Query: 173 YPPELLEVRCEVLIYKKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNKILHF 232
+ L+ + + RY + + + + I
Sbjct: 115 PTYHHGTLLDGELVLENRNVSEPVLRYVIFDALAIHGKC-----IIDRPLPKRLGYITEN 169
Query: 233 FAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSVLSGVNKLIEFYKKINIKRFNLPY 292
+ N +S + + ++ K L +
Sbjct: 170 VMKPFDNFKKHNPDIVNSPEFPFKVGFK-----TMLTSYHADDVLSKMDK-------LFH 217
Query: 293 EIDGVVYK 300
DG++Y
Sbjct: 218 ASDGLIYT 225
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 25.5 bits (56), Expect = 2.9
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 233 FAHGVGELRGMN 244
FAHG+GELR N
Sbjct: 29 FAHGLGELRQAN 40
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 26.7 bits (59), Expect = 3.1
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 551 KATEEQLLNIPKIGSTTVKAFIKFINQPLHRLLISQLRDV-GIYWLNNPNTKGGKVV-NF 608
+ + L ++ +IG + + + + L V GI GK + +F
Sbjct: 29 EGSARDLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERVEGI---------TGKQMESF 79
Query: 609 ISKNTNYLVKGQ 620
+ N L GQ
Sbjct: 80 LKANILGLAAGQ 91
Score = 25.2 bits (55), Expect = 8.6
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 454 FSSRKA-MNIIGLGKKMIEKLVNANIV 479
FS + + G+ K +E + ANI+
Sbjct: 59 FSQVEDLERVEGITGKQMESFLKANIL 85
>d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Galdieria partita [TaxId:
83374]}
Length = 138
Score = 27.1 bits (60), Expect = 3.9
Identities = 9/65 (13%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 19 TELKKELHRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGE 78
E ++H N + ++ P+ +LFE+ + ++ +VG
Sbjct: 35 IEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSN--------FYIKVVGFS 86
Query: 79 NSKYV 83
+ + +
Sbjct: 87 SVRGI 91
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Alcaligenes eutrophus [TaxId:
106590]}
Length = 129
Score = 27.1 bits (60), Expect = 4.0
Identities = 7/58 (12%), Positives = 20/58 (34%), Gaps = 8/58 (13%)
Query: 26 HRHNIAYYLYDNPIISDNKYDQLLFELKKIEEKYPELLTKDSLTQHVGLVGGENSKYV 83
H N + ++ P+ +L E+ +P ++ + +++ V
Sbjct: 42 HPRNTYWEMFGLPMFDLRDAAGILMEINNARNTFPN--------HYIRVTAFDSTHTV 91
>d1fzta_ c.60.1.1 (A:) Phosphoglycerate mutase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 211
Score = 26.9 bits (58), Expect = 6.3
Identities = 8/59 (13%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 373 EIYRKNIQIGDTVVVHRSGNVIPKITSSILSLRPNDSKIFKIPNICPICNSKIIYIESN 431
+I G+ V++ GN + + + L + ++ PI + +++ +
Sbjct: 146 STIVPHILKGEKVLIAAHGNSLRALIMDLEGLTGDQIVKRELATGVPI----VYHLDKD 200
>d1xeba_ d.108.1.1 (A:) Hypothetical protein PA0115 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 149
Score = 26.2 bits (57), Expect = 9.3
Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 15/130 (11%)
Query: 176 ELLEVRCEVLIY-------KKDFIKLNKYRYHLGLKKFTNPRNAAAGILRQLNPKINKNK 228
LL++R EV + + D + L +HL + + + A L +
Sbjct: 19 ALLQLRTEVFVVEQKCPYQEVDGLDLVGDTHHLMA--WRDGQLLAYLRLLDPVRHEGQVV 76
Query: 229 ILHFFAHGVGELRGMNMPSSHSELLNWYQKIGLSICGEYSV-LSGVNKLIEFYKKINIKR 287
I + +G+ +L+ + + + V LS L +Y +
Sbjct: 77 IGRVVSSSAARGQGLG-----HQLMERALQAAERLWLDTPVYLSAQAHLQAYYGRYGFVA 131
Query: 288 FNLPYEIDGV 297
Y D +
Sbjct: 132 VTEVYLEDDI 141
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.139 0.397
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,474,388
Number of extensions: 123094
Number of successful extensions: 467
Number of sequences better than 10.0: 1
Number of HSP's gapped: 450
Number of HSP's successfully gapped: 46
Length of query: 655
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 564
Effective length of database: 1,158,166
Effective search space: 653205624
Effective search space used: 653205624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.7 bits)