Query psy11424
Match_columns 245
No_of_seqs 186 out of 1045
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 18:04:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gtk_A Porphobilinogen deamina 100.0 1.1E-92 3.7E-97 649.4 28.9 240 1-243 68-307 (313)
2 3ecr_A Porphobilinogen deamina 100.0 1.1E-90 3.7E-95 644.2 27.1 241 1-244 86-359 (364)
3 3del_B Arginine binding protei 96.1 0.019 6.5E-07 46.8 7.8 139 2-149 65-210 (242)
4 3kzg_A Arginine 3RD transport 95.6 0.039 1.3E-06 45.0 7.8 104 2-110 58-165 (237)
5 3qax_A Probable ABC transporte 95.5 0.073 2.5E-06 43.7 9.4 143 2-149 85-231 (268)
6 3tql_A Arginine-binding protei 95.1 0.087 3E-06 41.9 8.1 103 2-109 56-164 (227)
7 2y7i_A STM4351; arginine-bindi 94.6 0.22 7.6E-06 39.7 9.4 143 2-149 60-206 (229)
8 3k4u_A Binding component of AB 94.3 0.056 1.9E-06 44.2 5.2 137 2-149 59-206 (245)
9 3ksx_A Nitrate transport prote 94.1 0.44 1.5E-05 41.3 11.0 102 2-108 74-190 (324)
10 3un6_A Hypothetical protein sa 94.1 0.019 6.6E-07 50.7 2.2 100 2-105 98-211 (341)
11 2yln_A Putative ABC transporte 94.1 0.038 1.3E-06 47.2 3.9 138 2-149 111-255 (283)
12 2yjp_A Putative ABC transporte 93.7 0.25 8.7E-06 42.0 8.4 138 2-149 112-254 (291)
13 1wdn_A GLNBP, glutamine bindin 93.6 0.28 9.7E-06 38.7 8.2 136 2-149 56-200 (226)
14 3kbr_A Cyclohexadienyl dehydra 93.5 0.054 1.8E-06 43.9 3.8 139 2-149 69-215 (239)
15 1xs5_A 29 kDa protein, membran 93.5 0.054 1.8E-06 47.0 3.8 145 1-160 45-227 (241)
16 3i6v_A Periplasmic His/Glu/Gln 93.3 0.38 1.3E-05 39.2 8.7 133 2-149 59-195 (232)
17 1zbm_A Hypothetical protein AF 93.2 0.21 7.2E-06 42.4 7.1 95 2-103 53-151 (280)
18 2ozz_A Hypothetical protein YH 93.2 0.22 7.7E-06 43.3 7.4 147 2-160 60-217 (231)
19 3mpk_A Virulence sensor protei 92.4 0.47 1.6E-05 39.6 8.1 137 2-149 87-231 (267)
20 3qsl_A Putative exported prote 92.2 0.11 3.6E-06 44.9 3.8 106 2-109 80-200 (346)
21 4eq9_A ABC transporter substra 91.8 0.78 2.7E-05 36.9 8.5 138 2-149 62-213 (246)
22 4h5g_A Amino acid ABC superfam 91.7 0.49 1.7E-05 39.0 7.4 100 2-105 69-173 (243)
23 2czl_A Hypothetical protein TT 91.5 0.31 1.1E-05 41.1 5.9 95 2-103 45-144 (272)
24 3uif_A Sulfonate ABC transport 91.2 0.44 1.5E-05 41.9 6.8 99 2-106 63-176 (348)
25 1lst_A Lysine, arginine, ornit 91.1 0.18 6E-06 40.7 3.9 101 2-107 58-165 (239)
26 1p99_A Hypothetical protein PG 90.8 0.14 4.6E-06 45.7 3.2 153 1-161 80-268 (295)
27 4i62_A Amino acid ABC transpor 90.8 0.73 2.5E-05 37.6 7.5 140 2-149 96-242 (269)
28 2vha_A Periplasmic binding tra 89.6 0.68 2.3E-05 38.8 6.4 137 2-149 78-226 (287)
29 4gvo_A LMO2349 protein; struct 89.2 0.56 1.9E-05 38.6 5.5 94 47-149 111-213 (243)
30 2q88_A EHUB, putative ABC tran 87.9 0.23 7.9E-06 40.7 2.3 103 2-108 67-178 (257)
31 1xt8_A Putative amino-acid tra 87.7 1.2 4.1E-05 37.5 6.7 138 2-149 101-243 (292)
32 3hv1_A Polar amino acid ABC up 87.2 2 7E-05 35.3 7.7 137 2-149 75-226 (268)
33 2v25_A Major cell-binding fact 86.1 2.1 7.3E-05 34.4 7.1 136 2-149 96-239 (259)
34 3h7m_A Sensor protein; histidi 86.0 0.83 2.8E-05 36.3 4.6 135 2-149 65-208 (234)
35 4f3p_A Glutamine-binding perip 85.9 2.8 9.4E-05 34.0 7.8 103 2-109 77-184 (249)
36 3ix1_A N-formyl-4-amino-5-amin 85.3 1.8 6E-05 36.9 6.6 95 2-101 50-157 (302)
37 1ii5_A SLR1257 protein; membra 84.9 0.83 2.8E-05 36.2 4.0 129 2-143 60-199 (233)
38 2pyy_A Ionotropic glutamate re 84.5 0.73 2.5E-05 36.3 3.5 100 2-108 56-163 (228)
39 1sw5_A Osmoprotection protein 84.3 7.3 0.00025 33.3 10.1 142 2-153 51-238 (275)
40 2iee_A ORF2, probable ABC tran 84.1 1.8 6.2E-05 36.0 6.0 136 2-149 78-224 (271)
41 2x7q_A Ca3427, possible thiami 82.6 1.6 5.4E-05 37.9 5.1 96 2-102 61-176 (321)
42 4ef1_A Pheromone COB1/lipoprot 81.5 10 0.00035 33.1 10.0 144 2-160 47-232 (246)
43 2g29_A Nitrate transport prote 78.1 4 0.00014 37.2 6.5 98 2-105 79-213 (417)
44 2pfz_A Putative exported prote 78.1 22 0.00077 30.7 11.2 127 2-140 53-214 (301)
45 2pvu_A ARTJ; basic amino acid 77.2 3.3 0.00011 34.2 5.2 103 2-109 95-202 (272)
46 2a5s_A N-methyl-D-aspartate re 75.8 1.1 3.6E-05 38.2 1.8 57 51-109 157-219 (284)
47 2x26_A Periplasmic aliphatic s 75.4 3.4 0.00012 35.0 4.9 102 2-106 48-162 (308)
48 3tqw_A Methionine-binding prot 75.4 31 0.0011 29.9 11.2 147 2-161 47-229 (240)
49 2pfy_A Putative exported prote 73.4 23 0.00078 30.6 9.9 127 2-140 54-215 (301)
50 4dz1_A DALS D-alanine transpor 71.7 1.6 5.6E-05 35.9 1.9 134 2-149 83-232 (259)
51 2i49_A Bicarbonate transporter 68.6 3 0.0001 38.6 3.2 98 2-104 82-220 (429)
52 3oxn_A Putative transcriptiona 68.0 8.4 0.00029 30.6 5.5 48 56-103 21-75 (241)
53 3gxa_A Outer membrane lipoprot 66.8 47 0.0016 29.4 10.5 143 2-161 67-248 (275)
54 3p7i_A PHND, subunit of alkylp 66.8 7.4 0.00025 34.4 5.3 108 2-110 62-191 (321)
55 2hxr_A HTH-type transcriptiona 65.9 11 0.00037 29.8 5.7 48 56-103 32-86 (238)
56 3hn0_A Nitrate transport prote 64.2 26 0.00089 29.9 8.2 89 2-104 49-151 (283)
57 4ab5_A Transcriptional regulat 63.0 5.8 0.0002 30.7 3.5 48 57-104 11-65 (222)
58 2fyi_A HTH-type transcriptiona 62.8 10 0.00035 30.0 5.0 48 56-103 16-70 (228)
59 4esw_A Pyrimidine biosynthesis 61.9 19 0.00066 31.2 7.0 110 2-115 54-183 (342)
60 1twy_A ABC transporter, peripl 61.5 15 0.00052 29.8 5.9 49 56-104 30-84 (290)
61 4got_A Methionine-binding lipo 60.3 72 0.0025 27.7 10.3 151 2-159 49-234 (249)
62 2h9b_A HTH-type transcriptiona 60.2 17 0.00058 30.5 6.2 48 56-103 92-146 (312)
63 2ql3_A Probable transcriptiona 56.1 15 0.00052 28.2 4.8 41 63-103 21-61 (209)
64 1i6a_A OXYR, hydrogen peroxide 54.4 11 0.00038 29.5 3.8 47 57-103 8-61 (219)
65 3ho7_A OXYR; beta-alpha-barrel 52.1 16 0.00055 28.4 4.4 49 56-104 13-68 (232)
66 2amh_A Septum formation protei 50.5 7.3 0.00025 33.1 2.2 33 57-89 13-47 (207)
67 3k2d_A ABC-type metal ION tran 49.1 17 0.00057 31.6 4.3 145 2-161 50-232 (237)
68 3g0m_A Cysteine desulfuration 49.0 57 0.0019 25.9 7.2 52 143-198 11-75 (141)
69 3n5l_A Binding protein compone 48.9 8.6 0.00029 33.5 2.5 108 2-110 52-182 (310)
70 2y7p_A LYSR-type regulatory pr 46.7 14 0.00049 29.2 3.3 48 56-103 10-64 (218)
71 1ex2_A Protein MAF; structural 46.2 11 0.00037 31.6 2.6 31 56-88 5-35 (189)
72 3onm_A Transcriptional regulat 45.8 26 0.00089 27.7 4.8 49 56-104 29-84 (238)
73 2h98_A HTH-type transcriptiona 44.3 27 0.00093 29.5 4.9 48 56-103 92-146 (313)
74 3ir1_A Outer membrane lipoprot 43.4 20 0.00069 31.3 3.9 143 2-161 45-226 (245)
75 2zzv_A ABC transporter, solute 43.4 1.1E+02 0.0038 26.9 9.0 104 2-112 86-228 (361)
76 3jv9_A OXYR, transcriptional r 42.7 28 0.00096 26.5 4.4 48 57-104 7-61 (219)
77 4ddd_A Immunogenic protein; ss 42.7 49 0.0017 28.9 6.5 98 2-103 82-202 (327)
78 2rc8_A Glutamate [NMDA] recept 40.7 15 0.0005 31.1 2.6 106 2-110 111-231 (294)
79 2esn_A Probable transcriptiona 38.6 20 0.00069 29.7 3.1 48 56-103 103-157 (310)
80 1ixc_A CBNR, LYSR-type regulat 37.3 36 0.0012 27.7 4.4 48 56-103 93-147 (294)
81 3fxq_A LYSR type regulator of 36.3 24 0.00084 29.2 3.3 49 56-104 94-149 (305)
82 3up9_A Putative uncharacterize 36.1 18 0.00061 31.6 2.4 146 2-159 51-230 (245)
83 2p5x_A ASMTL, N-acetylserotoni 35.5 22 0.00075 30.6 2.9 31 56-88 6-36 (230)
84 4ib2_A Putative lipoprotein; p 34.6 21 0.00071 31.3 2.6 149 2-159 54-238 (252)
85 2vpn_A Periplasmic substrate b 33.4 1.2E+02 0.0042 26.0 7.5 107 2-116 51-198 (316)
86 2de3_A Dibenzothiophene desulf 31.4 1.4E+02 0.0049 26.2 7.7 99 5-106 63-228 (365)
87 3fzv_A Probable transcriptiona 31.1 45 0.0015 27.3 4.1 48 56-103 97-151 (306)
88 1ovy_A 50S ribosomal protein L 30.4 44 0.0015 26.0 3.6 22 215-236 70-91 (120)
89 1al3_A Cys regulon transcripti 29.6 52 0.0018 27.6 4.3 48 56-103 95-149 (324)
90 1uth_A LYSR-type regulatory pr 27.2 45 0.0015 27.9 3.4 48 56-103 107-161 (315)
91 1wlo_A SUFE protein; structura 26.2 41 0.0014 26.6 2.7 51 144-197 8-68 (136)
92 3v2d_S 50S ribosomal protein L 26.0 1E+02 0.0036 23.6 5.0 42 195-236 35-83 (112)
93 2i6e_A Hypothetical protein; N 25.2 90 0.0031 27.0 5.1 94 2-104 53-155 (301)
94 3cvg_A Putative metal binding 25.1 72 0.0025 27.1 4.4 48 56-103 22-81 (294)
95 3j0c_B E2 envelope glycoprotei 24.9 34 0.0012 32.1 2.3 24 173-196 25-48 (423)
96 3gqv_A Enoyl reductase; medium 23.6 85 0.0029 27.7 4.7 50 57-106 192-241 (371)
97 3j0f_I E2 envelope glycoprotei 22.2 52 0.0018 30.9 3.0 24 173-196 23-46 (423)
98 3n40_P P62 envelope glycoprote 20.5 44 0.0015 31.2 2.1 24 173-196 86-109 (401)
No 1
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=100.00 E-value=1.1e-92 Score=649.37 Aligned_cols=240 Identities=47% Similarity=0.742 Sum_probs=235.7
Q ss_pred CccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCCCCCCCCCCCCeEeeCcHHHHHHHHHhCCCCeEEe
Q psy11424 1 MAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKS 80 (245)
Q Consensus 1 ~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~~~l~~lp~ga~IGTsS~RR~aql~~~~pdl~~~~ 80 (245)
+||++|+||||||||||||+++|+||.|+||++|+||||+||++++.+|.+||+|++|||||+||++||+++|||++|++
T Consensus 68 ~aLl~g~iDiAVHSlKDvPt~lp~gl~l~av~~RedprDalV~~~~~~l~~LP~Ga~VGTSSlRR~aQL~~~rPdl~i~~ 147 (313)
T 1gtk_A 68 VALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRS 147 (313)
T ss_dssp HHHHTTSCSEEEEEGGGSCSCCCTTEEEEEECCCCCCCEEEECSSCSSGGGCCTTCEEECCCHHHHHHHHHHCTTSEEEC
T ss_pred HHHHcCCCcEEEecCCCCCCCCCCCcEEEEEecCCCcceEEEECCCCChhhCCCCCEEecCCHHHHHHHHHHCCCCEEEe
Confidence 48999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred ccCcHHHHHhhhccCCccEEEehhhhhhhcCCccceeeecCCCCcCCCCCCceEEEEEecCcHHHHHHhhcCCChhhHHH
Q psy11424 81 LRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQT 160 (245)
Q Consensus 81 iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLg~~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll~~l~~~~t~~~ 160 (245)
|||||+|||+||++|+|||||||+|||+|||+.++++++|++++|+|||||||||||||++|+++.++|+.|||++|+.+
T Consensus 148 lRGNV~TRL~KL~~g~~DaiiLA~AGL~RLgl~~~i~~~l~~~~~lPA~gQGalaIe~r~~d~~~~~ll~~l~d~~t~~~ 227 (313)
T 1gtk_A 148 LRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALR 227 (313)
T ss_dssp CCSCHHHHHHHHHTTSCSEEEEEHHHHHHTTCGGGCSEECCTTTSCCCTTTTCEEEEEETTCHHHHHHHGGGCCHHHHHH
T ss_pred CCCCHHHHHHHhhCCCCCEEEHhhhHHHHcCCccccceeeChhhcCCCcCCceEEEEEccCcHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcceeeEEEEeccCCCeEEEEEEEEcCCCcEEEEEEEecCCCCHHHHHHHHHHHHHHhhHHHHHH
Q psy11424 161 VKAERAVSRNFNGSCKISLAAFAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEIIK 240 (245)
Q Consensus 161 v~aER~~l~~L~ggC~~Piga~a~~~~~~~~~l~l~~~v~~~dG~~~~~~~~~~~~~~a~~lg~~la~~l~~~ga~~il~ 240 (245)
+.|||+||+.|+|||++|||+||++ ++++|+|+|.|+++||++.++.+.+++.++++++|.++|++|+++|+++|++
T Consensus 228 ~~aERa~l~~L~GgC~~Piga~a~~---~~~~l~l~g~v~s~dG~~~~~~~~~g~~~~a~~lG~~la~~ll~~ga~~il~ 304 (313)
T 1gtk_A 228 VTAERAMNTRLEGGCQVPIGSYAEL---IDGEIWLRALVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAREILA 304 (313)
T ss_dssp HHHHHHHHHHHTCCTTSCEEEEEEE---ETTEEEEEEEEECTTSSCEEEEEEEECGGGHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCcceeeEEE---ECCEEEEEEEEEcCCCCEEEEEEEEcCHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 9999999999999999999999999 7899999999999999999999999999999999999999999999999998
Q ss_pred Hhh
Q psy11424 241 SYE 243 (245)
Q Consensus 241 ~~~ 243 (245)
+++
T Consensus 305 ~~~ 307 (313)
T 1gtk_A 305 EVY 307 (313)
T ss_dssp TTT
T ss_pred HHH
Confidence 864
No 2
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A*
Probab=100.00 E-value=1.1e-90 Score=644.24 Aligned_cols=241 Identities=36% Similarity=0.597 Sum_probs=229.9
Q ss_pred CccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcC---CCCCCCCCCCCeEeeCcHHHHHHHHHhCCCCe
Q psy11424 1 MAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISND---YISLSTLPKNAVVGTNSLRRKVLIKSFFPSLI 77 (245)
Q Consensus 1 ~aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~---~~~l~~lp~ga~IGTsS~RR~aql~~~~pdl~ 77 (245)
+||++|+||||||||||||+++|+||.|+||++|+||||+||+++ +.+|.+||+|++|||||+||++||+++|||++
T Consensus 86 ~ALl~g~iDiAVHSlKDvPt~lp~gl~l~av~~ReDprDalV~~~~~~~~~l~~LP~Ga~VGTSSlRR~aQL~~~rPdL~ 165 (364)
T 3ecr_A 86 HALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLE 165 (364)
T ss_dssp HHHHTTSCSEEEEEGGGSCSSCCTTEEEEEECCCCCCCEEEEECTTCTTCCTTTSCTTCEEECCCHHHHHHHHHHCTTSE
T ss_pred HHHhcCCCCEEEECcccCCCCCCCCcEEEEEcCCCCcceEEEEcCccCCCChhHCCCcCEEeCCcHHHHHHHHHHCCCCE
Confidence 479999999999999999999999999999999999999999986 67999999999999999999999999999999
Q ss_pred EEeccCcHHHHHhhhcc-CCccEEEehhhhhhhcCCccceeeecCCCCcCCCCCCceEEEEEecCcHHHHHHhhcCCChh
Q psy11424 78 IKSLRGNIDTRLNKLDK-GEYAAIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYF 156 (245)
Q Consensus 78 ~~~iRGNV~TRL~KL~~-g~~DaiiLA~AGL~RLg~~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll~~l~~~~ 156 (245)
|++|||||+|||+||++ |+|||||||+|||+|||+.++++++|++++|+|||||||||||||++|+++.++|+.|||++
T Consensus 166 i~~lRGNV~TRL~KL~~gg~~DAiILA~AGL~RLgl~~~i~~~l~~~~~lPA~gQGaLaIe~R~~D~~~~~ll~~l~d~~ 245 (364)
T 3ecr_A 166 FRSIRGNLNTRLRKLDEQQEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHDPE 245 (364)
T ss_dssp EECCCSCHHHHHHHHHHSSSCSEEEEEHHHHHHTTCGGGCCEECCTTTCCBCTTTTCEEEEEETTCHHHHHHHHTTCCHH
T ss_pred EEECCCCHHHHHHHhhcCCCcCEEEehhhHHhhcCCchheeEecChhhcCCccccceeEEEEecCCHHHHHHHHHcCCHH
Confidence 99999999999999999 59999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhccCCCcceeeEEEEeccCCCeEEEEEEEEcCCCcEEEEEEEec----------------------
Q psy11424 157 SEQTVKAERAVSRNFNGSCKISLAAFAMVNNFNESEINLRAIITNPNGLKIITAEVNG---------------------- 214 (245)
Q Consensus 157 t~~~v~aER~~l~~L~ggC~~Piga~a~~~~~~~~~l~l~~~v~~~dG~~~~~~~~~~---------------------- 214 (245)
|+.++.|||+||+.|+|||++|||+||++ ++++|+|+|.|+++||++.++.+.++
T Consensus 246 T~~~v~AERa~l~~L~GGC~~PIga~a~~---~~~~l~l~g~v~s~DG~~~i~~~~~g~v~~~~~~~~~~~~~~~~~g~~ 322 (364)
T 3ecr_A 246 TLLRCIAERAFLRHLEGGCSVPVAVHTAM---KDGQLYLTGGVWSLDGSDSIQETMQATIHVPAQHEDGPEDDPQLVGIT 322 (364)
T ss_dssp HHHHHHHHHHHHHHHC--CCSSEEEEEEE---ETTEEEEEEEEECTTSCSEEEEEEEEECCCCCSCCCCCTTCCCBTTBC
T ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEEEE---ECCEEEEEEEEECCCCCEEEEEEEEeeccccccccccccccccccccc
Confidence 99999999999999999999999999999 78999999999999999999998876
Q ss_pred -------CCCCHHHHHHHHHHHHHHhhHHHHHHHhhc
Q psy11424 215 -------PIDTPETVGLYAAELLKKKGAIEIIKSYEK 244 (245)
Q Consensus 215 -------~~~~a~~lg~~la~~l~~~ga~~il~~~~~ 244 (245)
+.++|+++|.++|++|+++||++||+++++
T Consensus 323 ~~~~~~~~~~~a~~lG~~lA~~Ll~~Ga~~il~~~~~ 359 (364)
T 3ecr_A 323 ARNIPRGPQLAAQNLGISLANLLLSKGAKNILDVARQ 359 (364)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHSCC
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 125699999999999999999999998763
No 3
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=96.06 E-value=0.019 Score=46.79 Aligned_cols=139 Identities=9% Similarity=0.035 Sum_probs=80.5
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCC---CCCCCCCCCCeEeeCcHHHHHHHHHhCCCCeE
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY---ISLSTLPKNAVVGTNSLRRKVLIKSFFPSLII 78 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~---~~l~~lp~ga~IGTsS~RR~aql~~~~pdl~~ 78 (245)
+|.+|++|+++.++-.-|. ....+.+ ...-......+++.+++ .++++| .|-+||+..---.......+|+.++
T Consensus 65 ~l~~g~~D~~~~~~~~~~~-r~~~~~~-~p~~~~~~~~~~~~~~~~~i~~~~dL-~g~~i~v~~g~~~~~~l~~~~~~~~ 141 (242)
T 3del_B 65 NLKQHRIDAVITGMSITPS-RLKEILM-IPYYGEEIKHLVLVFKGENKHPLPLT-QYRSVAVQTGTYQEAYLQSLSEVHI 141 (242)
T ss_dssp HHHTTSSSEECSSBBCCHH-HHTTEEE-EEEEEEEESEEEEEEESCCSCCCCGG-GSSCEEEETTSHHHHHHHHSTTCCE
T ss_pred HHhCCCcCEEEecCcCCHH-HHhcccc-eeeeecCCceEEEEeCCCCCCCHHHh-CCCEEEEEcCcHHHHHHHhCCCceE
Confidence 5778999999865433332 1222332 11111122345665543 356666 4667776443333344444899999
Q ss_pred EeccCcHHHHHhhhccCCccEEEehhhhhhhcCCccceeeecCCCCcCCCCCCce----EEEEEecCcHHHHHHh
Q psy11424 79 KSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGA----IAIEILDNRKELMEML 149 (245)
Q Consensus 79 ~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLg~~~~~~~~l~~~~~~PA~gQGa----lave~r~~d~~~~~ll 149 (245)
+... |.+.-++.|..|++|+++....-+..+--.......+. +.....- +++-++++++++.+.+
T Consensus 142 ~~~~-~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~k~~~~l~~~l 210 (242)
T 3del_B 142 RSFD-STLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTAT-----IDLPEDQWVLGYGIGVASDRPALALKI 210 (242)
T ss_dssp EEES-SHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEE-----EECCGGGCEEEEEEEEETTCHHHHHHH
T ss_pred EEEC-CHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCeEEec-----CccCcccccceEEEEEeCCCHHHHHHH
Confidence 8765 88999999999999999998776655422111111221 1111122 7888888887666555
No 4
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=95.59 E-value=0.039 Score=44.95 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=67.7
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCC---CCCCCCCCCCeEeeCcHHH-HHHHHHhCCCCe
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY---ISLSTLPKNAVVGTNSLRR-KVLIKSFFPSLI 77 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~---~~l~~lp~ga~IGTsS~RR-~aql~~~~pdl~ 77 (245)
+|.+|++|+++-++-.-|. ..+.+.+.. +=-...-+++.+++ .++.+| .|.+||+..--- ...+...+|+.+
T Consensus 58 ~l~~g~~D~~~~~~~~~~~-r~~~~~fs~--p~~~~~~~~~~~~~~~~~~~~dL-~g~~i~~~~g~~~~~~~~~~~~~~~ 133 (237)
T 3kzg_A 58 ALKNREVDLVIASMIITDE-RKKHFIFSL--PYMESNSQYITTVDSKISTFDDL-HGKKIGVRKGTPYARQVLSENRNNQ 133 (237)
T ss_dssp HHHTTSSSEECSSCBCCTT-GGGTCEECC--CSBCCEEEEEEETTCSCCSGGGG-TTCEEEEETTSTHHHHHHHTCSSCE
T ss_pred HHhCCCCCEEEEccccChh-Hhccceeee--eeeecceEEEEECCCCCCCHHHh-CCCEEEEecCCHHHHHHHHhCCCCc
Confidence 5789999998875543332 222233221 11123345555544 356666 477888754433 567778899988
Q ss_pred EEeccCcHHHHHhhhccCCccEEEehhhhhhhc
Q psy11424 78 IKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRL 110 (245)
Q Consensus 78 ~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RL 110 (245)
++.. .|.++-++.|.+|++||++....-+..+
T Consensus 134 ~~~~-~~~~~~~~~l~~G~vDa~~~~~~~~~~~ 165 (237)
T 3kzg_A 134 VIFY-ELIQDMLLGLSNNQVDASLMDYEAAKYW 165 (237)
T ss_dssp EEEE-SSHHHHHHHHHTTSSSEEEEEHHHHHHH
T ss_pred EEEe-CCHHHHHHHHHcCCCCEEEeCcHHHHHH
Confidence 8866 5788999999999999999987665443
No 5
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=95.55 E-value=0.073 Score=43.70 Aligned_cols=143 Identities=9% Similarity=0.059 Sum_probs=81.3
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCC----CCCCCCCCCCeEeeCcHHHHHHHHHhCCCCe
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY----ISLSTLPKNAVVGTNSLRRKVLIKSFFPSLI 77 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~----~~l~~lp~ga~IGTsS~RR~aql~~~~pdl~ 77 (245)
+|.+|++|+++.++---|. ..+.+.+..+ -......+++.+++ .++++| +|.+||+..---.......+|+.+
T Consensus 85 ~l~~g~~D~~~~~~~~~~~-r~~~~~~~p~-~~~~~~~~~~~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~l~~~~~~~ 161 (268)
T 3qax_A 85 NLKKHRIDAILAGMSITPS-RQKEIALLPY-YGDEVQELMVVSKRSLETPVLPLT-QYSSVAVQTGTYQEHYLLSQPGIC 161 (268)
T ss_dssp HHHHTSSSEECSCCBCCHH-HHTTSEEEEE-ECCCBCEEEEEEETTSCSCCCCGG-GSSCEEEETTSHHHHHHHTSTTCC
T ss_pred HHhCCCccEEeecCccCHh-Hhcceeeecc-eecccceEEEEECCCCCCCCHHHh-CCCEEEEecCcHHHHHHHhCCCce
Confidence 5778999999865432221 1223333222 11133455665443 356666 477777654444445555588999
Q ss_pred EEeccCcHHHHHhhhccCCccEEEehhhhhhhcCCccceeeecCCCCcCCCCCCceEEEEEecCcHHHHHHh
Q psy11424 78 IKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 149 (245)
Q Consensus 78 ~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLg~~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll 149 (245)
++... |.+.-++.|.+|++|+++.-..-+..+--.......+. ..+.+.+-.--+++-++++++++.+.+
T Consensus 162 ~~~~~-~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~~l~~~l 231 (268)
T 3qax_A 162 VRSFD-STLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPNLVATR-LELPPECWVLGCGLGVAKDRPEEIQTI 231 (268)
T ss_dssp EEEES-CHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEE-EECCGGGCBCCEEEEECTTCHHHHHHH
T ss_pred EEecC-CHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCcEEec-CccCcccccccEEEEEeCCCHHHHHHH
Confidence 88764 78899999999999999997766554422111011111 111111101116788888887655554
No 6
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=95.06 E-value=0.087 Score=41.86 Aligned_cols=103 Identities=16% Similarity=0.195 Sum_probs=65.0
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCC----CCCCCCCCCCeEeeCcHHH-HHHHHHhCCC-
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY----ISLSTLPKNAVVGTNSLRR-KVLIKSFFPS- 75 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~----~~l~~lp~ga~IGTsS~RR-~aql~~~~pd- 75 (245)
+|.+|++|+++-++-.-| +..+.+.+.. +=-....+++.+++ .++++| +|-+||+..--- ...+....|+
T Consensus 56 ~l~~g~~D~~~~~~~~~~-~r~~~~~~s~--p~~~~~~~l~~~~~~~~~~~~~dL-~g~~v~~~~g~~~~~~l~~~~~~~ 131 (227)
T 3tql_A 56 SLKLGKFDALFGGMNITT-ARQKEVDFTD--PYYTNSVSFIADKNTPLTLSKQGL-KGKIIGVQGGTTFDSYLQDSFGNS 131 (227)
T ss_dssp HHHHTSCSEECSSCBCCT-TGGGTEEECS--CSBCCEEEEEEETTSCCCCSTTTT-TTCEEEEETTSHHHHHHHHHHGGG
T ss_pred HHhCCCCCEEEecCcCCH-hHHhheeccc--ceeccceEEEEeCCCCCCCCHHHh-CCCEEEEEecccHHHHHHHhcccc
Confidence 577899999975442112 2223333221 11123456666553 366777 477887743222 4556666777
Q ss_pred CeEEeccCcHHHHHhhhccCCccEEEehhhhhhh
Q psy11424 76 LIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKR 109 (245)
Q Consensus 76 l~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~R 109 (245)
.+++.. .|.+.-++.|..|++|+++....-+..
T Consensus 132 ~~~~~~-~~~~~~~~~l~~grvDa~~~~~~~~~~ 164 (227)
T 3tql_A 132 ITIQRY-PSEEDALMDLTSGRVDAVVGDTPLIKQ 164 (227)
T ss_dssp SEEEEE-SSHHHHHHHHTTTSSSEEESCHHHHHH
T ss_pred ceEEEc-CCHHHHHHHHHcCCcCEEEeChHHHHH
Confidence 788766 478899999999999999987766543
No 7
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=94.58 E-value=0.22 Score=39.69 Aligned_cols=143 Identities=9% Similarity=0.097 Sum_probs=79.6
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCC--CCCCCCCCCCeEeeCcHHH-HHHHHHhCCCCeE
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY--ISLSTLPKNAVVGTNSLRR-KVLIKSFFPSLII 78 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~--~~l~~lp~ga~IGTsS~RR-~aql~~~~pdl~~ 78 (245)
+|.+|++|+++.++-.-| +..+.+.+.. +--.....+++.+++ .++++| .|.+||+..--. ...+...+|+.++
T Consensus 60 ~l~~g~~D~~~~~~~~~~-~r~~~~~~s~-p~~~~~~~~~~~~~~~~~~~~dL-~g~~v~~~~g~~~~~~l~~~~~~~~~ 136 (229)
T 2y7i_A 60 SLRFKKFDAVIAGMDMTP-KREQQVSFSQ-PYYEGLSAVVVTRKGAYHTFADL-KGKKVGLENGTTHQRYLQDKQQAITP 136 (229)
T ss_dssp HHHTTSCSEECSSCBCCH-HHHTTSEECS-CSBCCCCEEEEEETTSCCSTGGG-TTCEEEEETTSHHHHHHHHHCTTSEE
T ss_pred HHhCCCceEEEecCccCH-HHhcceeecc-ccccCCcEEEEEeCCCCCCHHHH-CCCEEEEecCCcHHHHHHHhCCCCeE
Confidence 577899999985432111 1112333221 111111456666543 466777 578888643222 3456667899988
Q ss_pred EeccCcHHHHHhhhccCCccEEEehhhhhhhcCCc-cceeeecCCCCcCCCCCCceEEEEEecCcHHHHHHh
Q psy11424 79 KSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQ-KRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 149 (245)
Q Consensus 79 ~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLg~~-~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll 149 (245)
+.. .|.++-++.|..|++|+++....-+..+--. ..+ ..+.+...-|..-..-+++.++++++++.+.+
T Consensus 137 ~~~-~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 206 (229)
T 2y7i_A 137 VAY-DSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDY-AIMDERASDPDYYGKGLGIAVRKDNDALLQEI 206 (229)
T ss_dssp EEE-SCHHHHHHHHHTTSCSEEEEEHHHHHHHHTTCTTE-EECSCCBCCTTTSCCCBCCEECTTCHHHHHHH
T ss_pred Eec-CCHHHHHHHHHcCCcCEEEechHHHHHHHHhCCCe-EEeccccccccccccceEEEEeCCCHHHHHHH
Confidence 876 4788999999999999999977665443111 122 22322111111111235566777776655544
No 8
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=94.27 E-value=0.056 Score=44.25 Aligned_cols=137 Identities=9% Similarity=0.047 Sum_probs=79.6
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCC-----CCCCCCCC-CCeEeeCcHHH-HHHHHHhCC
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY-----ISLSTLPK-NAVVGTNSLRR-KVLIKSFFP 74 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~-----~~l~~lp~-ga~IGTsS~RR-~aql~~~~p 74 (245)
+|.+|++|+++-++-.-|. ..+.+.+.. +=-....+++.++. .++++|.. |.+||+..--- ...+...+|
T Consensus 59 ~l~~g~~D~~~~~~~~t~~-r~~~~~~s~--p~~~~~~~~~~~~~~~~~i~~~~dL~~~g~~i~v~~g~~~~~~l~~~~~ 135 (245)
T 3k4u_A 59 GLVTEKFDIIISGMTISQE-RNLRVNFVE--PYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEYAAKRLFK 135 (245)
T ss_dssp HHHTTSCSEECSSCBCCHH-HHTTSEECS--CSEEECEEEEEETTTTTTCCSGGGGCCSSCEEEEETTSHHHHHHHHHCS
T ss_pred HHhCCCcCEEEecCcCCHH-HHhhcCcch--hhheeceEEEEECCcccccCCHHHhccCCcEEEEeCCcHHHHHHHhhCC
Confidence 5778999998765432221 111222211 11112345555443 35677753 77887643332 345666789
Q ss_pred CCeEEeccCcHHHHHhhhccCCccEEEehhhhhhh----cCCccceeeecCCCCcCCCCCCceEEEEEecCcHHHHHHh
Q psy11424 75 SLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKR----LNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 149 (245)
Q Consensus 75 dl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~R----Lg~~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll 149 (245)
+.+++... |.+.-++.|.+|++|+++.-..-+.. .+. ..+ ..+.. ....--+++-++++++++.+.+
T Consensus 136 ~~~~~~~~-~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~-~~~-~~~~~-----~~~~~~~~~~~~k~~~~l~~~l 206 (245)
T 3k4u_A 136 NAKLKTYD-TEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQ-GYL-VHLDT-----SLTYEPLGWAIKKGDPDFLNWL 206 (245)
T ss_dssp SSEEEEES-SHHHHHHHHHSSSSEEEEEEHHHHHHHHHHTTT-TTE-EEECC-----CCSCEEECCEECTTCHHHHHHH
T ss_pred cCCEEEeC-CHHHHHHHHHcCCCcEEEEcHHHHHHHHhcCCc-cce-eecCC-----CcccccEEEEEcCCCHHHHHHH
Confidence 99988775 67888999999999999988654433 331 222 11221 1123456777888887655544
No 9
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=94.12 E-value=0.44 Score=41.33 Aligned_cols=102 Identities=12% Similarity=0.067 Sum_probs=63.5
Q ss_pred ccccCCccEEeecCCCCCC----CCCCCeeEEEecCCCCCCeEEEEcCC---CCCCCCCCCCeEeeC--cHHH--H-HHH
Q psy11424 2 AIIKGKADLAVHSLKDIPM----NLPSGFILCAILKREDPRDAFISNDY---ISLSTLPKNAVVGTN--SLRR--K-VLI 69 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~----~l~~gL~iaav~~R~dprDvlv~~~~---~~l~~lp~ga~IGTs--S~RR--~-aql 69 (245)
+|.+|++|+++-+. .|. .-...+.+.+.........+++.++. +++.+| +|-+||++ |.-. . ..|
T Consensus 74 al~~G~~D~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~~~~lvv~~~s~I~s~~DL-kGk~i~v~~gs~~~~~~~~~l 150 (324)
T 3ksx_A 74 ALNVGSIDLGGAGD--IPPLFAQAAGADLLYVGWVPPTPKAETILVPSKSALRTVADL-KGKRIAFQKGSSAHNLLLRVL 150 (324)
T ss_dssp HHHTTSCSEEEEES--HHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTCSCCSGGGG-TTCEEEECTTSHHHHHHHHHH
T ss_pred HHHCCCCCEEeecC--HHHHHHHhcCCCEEEEEEecCCCCceEEEEeCCCCCCCHHHh-CCCEEEecCCChHHHHHHHHH
Confidence 68899999997653 111 11224666666655444567776653 467777 58888875 2111 1 122
Q ss_pred HHhC---CCCeEEeccCcHHHHHhhhccCCccEEEehhhhhh
Q psy11424 70 KSFF---PSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLK 108 (245)
Q Consensus 70 ~~~~---pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~ 108 (245)
+..- .+++++++ +....+.-|.+|++||+++...-..
T Consensus 151 ~~~Gl~~~~v~~v~~--~~~~~~~al~~G~vDa~~~~~p~~~ 190 (324)
T 3ksx_A 151 AKSGLSMRDITPLYL--SPANARAAFAAGQVDAWAIWDPWYS 190 (324)
T ss_dssp HHTTCCGGGSEEEEC--CHHHHHHHHHTTCCSEEEEETTHHH
T ss_pred HHcCCCHHHeEEEeC--CHHHHHHHHHcCCCCEEEEccHHHH
Confidence 2221 25777776 5778889999999999887654443
No 10
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=94.09 E-value=0.019 Score=50.70 Aligned_cols=100 Identities=12% Similarity=0.063 Sum_probs=61.0
Q ss_pred ccccCCccEEeecCCCCCC--CCCCCeeEEEecCCCCCCeEEEEcCC---CCCCCCCCCCeEeeCc---HHH-HH--HHH
Q psy11424 2 AIIKGKADLAVHSLKDIPM--NLPSGFILCAILKREDPRDAFISNDY---ISLSTLPKNAVVGTNS---LRR-KV--LIK 70 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~--~l~~gL~iaav~~R~dprDvlv~~~~---~~l~~lp~ga~IGTsS---~RR-~a--ql~ 70 (245)
+|.+|++|+++-++--.-. .....+.+.+.... ...+++.++. +++.||++|-+||+++ ... .. .|+
T Consensus 98 al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~~ivv~~~s~I~s~~DL~kGk~i~v~~~~s~~~~~~~~~l~ 175 (341)
T 3un6_A 98 ALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHH--EGNVIMGQKGMHLNEFNNNGDDYHFGIPHRYSTHYLLLEELRK 175 (341)
T ss_dssp HHHTTSSSEEEEEHHHHHHHHHTTCCCEEEEESCE--ECEEEEESTTCCGGGCCSSSSCEEEEESCSSSHHHHHHHHHHH
T ss_pred HHHcCCCCEEecchHHHHHHHHCCCCeEEEeecCC--CceEEEEcCCCCCCCHHHhCCCCEEEECCCCCHHHHHHHHHHH
Confidence 6889999999866511100 01123455555432 2455666553 4688999999998642 222 21 222
Q ss_pred Hh--CC-CCeEEeccCcHHHHHhhhccCCccEEEehhh
Q psy11424 71 SF--FP-SLIIKSLRGNIDTRLNKLDKGEYAAIILAAA 105 (245)
Q Consensus 71 ~~--~p-dl~~~~iRGNV~TRL~KL~~g~~DaiiLA~A 105 (245)
.. -| |++++.+ +....+.-|.+|++||.++..-
T Consensus 176 ~~Gl~~~dv~~~~~--~~~~~~~al~~G~vDa~~~~~p 211 (341)
T 3un6_A 176 QLKIKPGHFSYHEM--SPAEMPAALSEHRITGYSVAEP 211 (341)
T ss_dssp HTTCCTTSEEEEEC--CGGGHHHHHHTTSCSEEEEETT
T ss_pred HcCCCHHHeEEEEc--ChHHHHHHHHcCCCCEEEecCC
Confidence 22 12 5677777 3567788899999999998544
No 11
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=94.07 E-value=0.038 Score=47.16 Aligned_cols=138 Identities=6% Similarity=0.018 Sum_probs=75.2
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcC---CCCCCCCCCCCeEeeCcHHHHHHHHHhCCCCeE
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISND---YISLSTLPKNAVVGTNSLRRKVLIKSFFPSLII 78 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~---~~~l~~lp~ga~IGTsS~RR~aql~~~~pdl~~ 78 (245)
+|.+|++|+++-++--...+....+.+.. +=-...-++++++ ..++++| +|.+||+..---...+...+ ++++
T Consensus 111 ~l~~G~~D~~~~~~~~~t~~r~~~~~~~~--p~~~~~~~l~~~~~~~i~s~~dL-~G~~v~v~~g~~~~~~l~~~-~~~~ 186 (283)
T 2yln_A 111 GLKAGRFDVVANQVGLTSPERQATFDKSE--PYSWSGAVLVAHNDSNIKSIADI-KGVKTAQSLTSNYGEKAKAA-GAQL 186 (283)
T ss_dssp HHHHTSCSEECSSCCCCSHHHHHHEEECS--CSEEECEEEEEETTCSCCSGGGC-TTSEEEECTTSHHHHHHHHT-TCEE
T ss_pred HHHCCCcCEEEecCccCChhhhcceEecc--CeeeecEEEEEECCCCCCCHHHh-CCCEEEEecCchHHHHHHHc-CCeE
Confidence 57789999998654320011112222211 1111233555555 3478888 78999875433322333333 5777
Q ss_pred EeccCcHHHHHhhhccCCccEEEehhhhhh----hcCCccceeeecCCCCcCCCCCCceEEEEEecCcHHHHHHh
Q psy11424 79 KSLRGNIDTRLNKLDKGEYAAIILAAAGLK----RLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 149 (245)
Q Consensus 79 ~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~----RLg~~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll 149 (245)
+.. .+...-+..|.+|++|+++.-..-+. +.+.. .+ .++....+-+ .--+++-++++++++.+.+
T Consensus 187 ~~~-~~~~~~~~~l~~g~vDa~i~~~~~~~~~~~~~~~~-~l-~~~~~~~~~~---~~~~~i~~~k~~~~l~~~i 255 (283)
T 2yln_A 187 VPV-DGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNA-GV-KIVWSAPADE---KVGSGLIVNKGNDEAVAKF 255 (283)
T ss_dssp EEC-SSHHHHHHHHHTTSCCEEEEEHHHHHHHHHHSTTS-SE-EEEEECCGGG---CEEECCEEESSCHHHHHHH
T ss_pred EEe-CCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCC-cE-EEccCcccCC---cccEEEEEeCCCHHHHHHH
Confidence 655 47888999999999999998665433 33322 12 1222011110 2346677788876655444
No 12
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=93.67 E-value=0.25 Score=42.01 Aligned_cols=138 Identities=13% Similarity=0.127 Sum_probs=79.0
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCC---CCCCCCCCCCeEeeCcHH-HHHHHHHhCCCCe
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY---ISLSTLPKNAVVGTNSLR-RKVLIKSFFPSLI 77 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~---~~l~~lp~ga~IGTsS~R-R~aql~~~~pdl~ 77 (245)
+|.+|++|+++-++-.-| +....+.+.. +=.....+++++++ .++++| +|.+||+..-- =...+...+|+.+
T Consensus 112 ~l~~G~~D~~~~~~~~~~-~r~~~~~~~~--p~~~~~~~l~~~~~~~i~sl~dL-~gk~v~~~~g~~~~~~l~~~~~~~~ 187 (291)
T 2yjp_A 112 YVRSGKVDLILANFTQTP-ERAEAVDFAD--PYMKVALGVVSPKNKPITDMAQL-KDQTLLVNKGTTADAFFTKSHPEVK 187 (291)
T ss_dssp HHHTTSCSEECSSCBCCH-HHHTTEEECC--CCEEECEEEEEETTSCCCSGGGG-TTSEEEEETTSHHHHHHHHHCTTSE
T ss_pred HHhCCCeeEEEeCCCCCh-HHHccceecc--CeeecceEEEEeCCCCCCCHHHh-CCCEEEEecCCcHHHHHHHhCCCce
Confidence 578999999986432111 1112233221 11122345666553 467778 48888864221 1245666778998
Q ss_pred EEeccCcHHHHHhhhccCCccEEEehhhhhhhcCCc-cceeeecCCCCcCCCCCCceEEEEEecCcHHHHHHh
Q psy11424 78 IKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQ-KRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 149 (245)
Q Consensus 78 ~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLg~~-~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll 149 (245)
++... +.+.-++.|.+|++||++....-+..+--. ..+ ..++. |-..+..+++.++++++++.+.+
T Consensus 188 ~~~~~-~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~k~~~~l~~~l 254 (291)
T 2yjp_A 188 LLKFD-QNTETFDALKDGRGVALAHDNALLWAWAKENPNF-EVAIG----NLGPAEFIAPAVQKGNADLLNWV 254 (291)
T ss_dssp EEEES-SHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTE-EEEEC----CSSSCEEECCEEETTCHHHHHHH
T ss_pred EEEeC-CHHHHHHHHHcCCccEEEecHHHHHHHHHhCCCe-EEcCC----cccCCcceEEEEeCCCHHHHHHH
Confidence 88764 789999999999999999976554433111 112 12221 11122334777888887655544
No 13
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=93.65 E-value=0.28 Score=38.75 Aligned_cols=136 Identities=13% Similarity=0.099 Sum_probs=76.8
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCC----CCCCCCCCCCeEeeCcHH-HHHHHHHhCCCC
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY----ISLSTLPKNAVVGTNSLR-RKVLIKSFFPSL 76 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~----~~l~~lp~ga~IGTsS~R-R~aql~~~~pdl 76 (245)
+|.+|++|+++.++-.-|. ..+.+.+.. +=-...-+++.+++ .++++| .|.+||+..-- -...+...+|+.
T Consensus 56 ~l~~g~~D~~~~~~~~~~~-r~~~~~~~~--p~~~~~~~~~~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~l~~~~~~~ 131 (226)
T 1wdn_A 56 ALQTKNVDLALAGITITDE-RKKAIDFSD--GYYKSGLLVMVKANNNDVKSVKDL-DGKVVAVKSGTGSVDYAKANIKTK 131 (226)
T ss_dssp HHHTTSSSEEEEEEECCHH-HHTTSEECS--CCEEEEEEEEEETTCCSCSSSTTT-TTCEEEEETTSHHHHHHHHHCCCS
T ss_pred HHhCCCCCEEEEcCcCCHH-HhCcccccc--chhcCceEEEEeCCCCCCCCHHHh-CCCEEEEEcCCcHHHHHHHhCCCc
Confidence 5779999999865432221 112222210 00011234444432 356777 57788763221 134566667888
Q ss_pred eEEeccCcHHHHHhhhccCCccEEEehhhhhhhc----CCccceeeecCCCCcCCCCCCceEEEEEecCcHHHHHHh
Q psy11424 77 IIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRL----NLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 149 (245)
Q Consensus 77 ~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RL----g~~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll 149 (245)
+++.. .|.++-++.|.+|++|+++....-+..+ +. ..+. .+++ .....-+++-++++++++.+.+
T Consensus 132 ~~~~~-~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~-~~l~-~~~~-----~~~~~~~~~~~~k~~~~l~~~~ 200 (226)
T 1wdn_A 132 DLRQF-PNIDNAYMELGTNRADAVLHDTPNILYFIKTAGN-GQFK-AVGD-----SLEAQQYGIAFPKGSDELRDKV 200 (226)
T ss_dssp EEEEE-SSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTT-TTEE-EEEE-----EEEEEEEEEEECTTCHHHHHHH
T ss_pred eEEEe-CCHHHHHHHHHcCCcCEEEeCcHHHHHHHHhCCC-CceE-EecC-----CcccCceEEEEeCCCHHHHHHH
Confidence 88765 4788999999999999999876554432 22 1221 1111 1123457788888876555444
No 14
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=93.54 E-value=0.054 Score=43.95 Aligned_cols=139 Identities=9% Similarity=-0.005 Sum_probs=78.8
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCC-----CCCCCCC-CCCeEeeCcH-HHHHHHHHhCC
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY-----ISLSTLP-KNAVVGTNSL-RRKVLIKSFFP 74 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~-----~~l~~lp-~ga~IGTsS~-RR~aql~~~~p 74 (245)
+|.+|++|+++-++-.-|. ..+.+.+.. +--. ..-+++.++. .++++|. +|.+||+..- --...+...+|
T Consensus 69 ~l~~g~~D~~~~~~~~t~~-r~~~~~fs~-p~~~-~~~~~~~~~~~~~~i~~~~dL~~~g~~v~~~~g~~~~~~l~~~~~ 145 (239)
T 3kbr_A 69 DFADDRFDIAMSGISINLE-RQRQAYFSI-PYLR-DGKTPITLCSEEARFQTLEQIDQPGVTAIVNPGGTNEKFARANLK 145 (239)
T ss_dssp HHHTTCCSEECSSCBCCHH-HHTTCEECS-CSEE-ECEEEEEEGGGGGGGSSHHHHSSTTCEEEECTTSHHHHHHHHHCS
T ss_pred HHHCCCcCEEEeCCcCCHH-HcCccccch-HHhc-cCcEEEEECCcccccCCHHHhcCCCcEEEEcCCCcHHHHHHHhCC
Confidence 5779999999765432221 111122110 1111 1234444332 3556664 3778886322 23456677799
Q ss_pred CCeEEeccCcHHHHHhhhccCCccEEEehhhhhhhcCCcc-ceeeecCCCCcCCCCCCceEEEEEecCcHHHHHHh
Q psy11424 75 SLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQK-RIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 149 (245)
Q Consensus 75 dl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLg~~~-~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll 149 (245)
+.+++... |.+.-++.|.+|++|+++.-..-+..+--.. .. ..+.+.. .....-+++-+++ ++++.+.+
T Consensus 146 ~~~~~~~~-~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~k-~~~l~~~l 215 (239)
T 3kbr_A 146 KARILVHP-DNVTIFQQIVDGKADLMMTDAIEARLQSRLHPEL-CAVHPQQ---PFDFAEKAYLLPR-DEAFKRYV 215 (239)
T ss_dssp SSEEEECC-CTTTHHHHHHTTSCSEEEEEHHHHHHHHHHCTTE-EECCCC----CCCCEEECCEECS-CHHHHHHH
T ss_pred CCceEEeC-CHHHHHHHHHcCCcCEEEEchHHHHHHHHhCCCc-EEecCCC---CccccceEEEEcC-CHHHHHHH
Confidence 99998765 7788999999999999998776654432111 11 1222111 1235567778888 77666655
No 15
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=93.48 E-value=0.054 Score=47.02 Aligned_cols=145 Identities=14% Similarity=0.170 Sum_probs=80.5
Q ss_pred CccccCCccEEe--ecCCCCCCC--C--CCC--eeEEEecCCCCCCeEEEEcCCCCCCCCCCCCeEeeCc----HHHHHH
Q psy11424 1 MAIIKGKADLAV--HSLKDIPMN--L--PSG--FILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNS----LRRKVL 68 (245)
Q Consensus 1 ~aLl~g~iDiAV--HSlKDlP~~--l--~~g--L~iaav~~R~dprDvlv~~~~~~l~~lp~ga~IGTsS----~RR~aq 68 (245)
+||.+|++|+.. |. |.- . ..| |...+-...+ | ..+.+++.+++.+||+|++|+.+. .=|.-+
T Consensus 45 ~AL~~G~iD~n~fq~~----~~l~~~~~~~g~~l~~v~~~~~~-p-~g~ys~kiksl~dL~~G~~Iaip~d~sn~~ral~ 118 (241)
T 1xs5_A 45 EAVMRGDILMNFFQHV----PHMQQFNQEHNGDLVSVGNVHVE-P-LALYSRTYRHVSDFPAGAVIAIPNDSSNEARALR 118 (241)
T ss_dssp HHHHHTSSSEEEEEEH----HHHHHHHHHHTCCEEEEEEEEEC-C-CEEECSSCCSGGGCCTTCEEEEECSHHHHHHHHH
T ss_pred HHHHcCCCCEeccCCH----HHHHHHHHHCCCCEEEEEeeccc-c-ceeecCCCCChHHcCCCCEEEEeCCCchHHHHHH
Confidence 378999999986 42 210 0 123 3333322233 3 356677889999999999998643 334545
Q ss_pred HHHhC----------------------CCCeEEeccCcHHHHHhhhccCCccEEEehhhhhhhcCCccc-eeeecCCCCc
Q psy11424 69 IKSFF----------------------PSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKR-IRMLFSPNQI 125 (245)
Q Consensus 69 l~~~~----------------------pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLg~~~~-~~~~l~~~~~ 125 (245)
++... -+++|+.+-..-- .+-| +++||.++..-=...-|+... -.-+++.. .
T Consensus 119 lL~~aGli~l~~~~~~~~t~~dI~~np~~v~~~~l~~~~~--~~al--~~VDaa~i~~~~a~~agl~~~~~~l~~e~~-~ 193 (241)
T 1xs5_A 119 LLEAAGFIRMRAGSGLFATVEDVQQNVRNVVLQEVESALL--PRVF--DQVDGAVINGNYAIMAGLSARRDGLAVEPD-A 193 (241)
T ss_dssp HHHHTTSCEECTTCCTTCCGGGEEECTTCCEEEEECGGGH--HHHG--GGSSEEEECHHHHHHTTCCTTTTCSEECSC-G
T ss_pred HHHHCCCEEecCCCCCccChhhhhcCCCceEEEEeCHHHH--HHhh--hccCEEEECcHHHHHcCCCcccceEEEcCC-C
Confidence 55421 2577877643211 2223 489999886433334454321 01122221 1
Q ss_pred CCCCCCceEEEEEec---CcHHHHHHhhcCCChhhHHH
Q psy11424 126 LPAPGQGAIAIEILD---NRKELMEMLIPLNHYFSEQT 160 (245)
Q Consensus 126 ~PA~gQGalave~r~---~d~~~~~ll~~l~~~~t~~~ 160 (245)
.| -+..+.+|+ +++.+..+++.++++++..-
T Consensus 194 ~~----~~nviv~r~~~~~~~~vk~l~~a~~s~~v~~~ 227 (241)
T 1xs5_A 194 SA----YANVLVVKRGNEADARVQAVLRALCGGRVRTY 227 (241)
T ss_dssp GG----GCEEEEEETTCTTCHHHHHHHHHHTSHHHHHH
T ss_pred Cc----eEEEEEEECCccChHHHHHHHHHHCCHHHHHH
Confidence 12 334455664 45778888888887765443
No 16
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=93.34 E-value=0.38 Score=39.16 Aligned_cols=133 Identities=10% Similarity=0.059 Sum_probs=78.4
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCCCCCCCCCCCCeEeeCcHHHHHHHHHhCCCCeEEec
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSL 81 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~~~l~~lp~ga~IGTsS~RR~aql~~~~pdl~~~~i 81 (245)
+|.+|++|+++-++-.-|. ..+.+.+..-. - ....+++.+++. +.+| .| +||+..---........ +.+++..
T Consensus 59 ~l~~g~~D~~~~~~~~t~~-r~~~~~fs~p~-~-~~~~~~~~~~~~-~~dL-~g-~igv~~g~~~~~~l~~~-~~~~~~~ 131 (232)
T 3i6v_A 59 NLVSGNYDTIIAGMSITDE-RDEVIDFTQNY-I-PPTASSYVATSD-GADL-SG-IVAAQTATIQAGYIAES-GATLVEF 131 (232)
T ss_dssp HHHTTSCSEECSSCBCCHH-HHTTSEEEEEE-E-CCCEEEEEESST-TCCT-TS-EEEEETTSHHHHHHHHS-SSEEEEE
T ss_pred HHHCCCCCEEEeCCcCCHH-HHhhcCccccc-c-cCCeEEEEECCC-hHHh-CC-CEEEecCchHHHHHHhc-CCeEEEe
Confidence 5778999998876533331 22233333211 1 233566666543 7788 46 99885444333333334 6788776
Q ss_pred cCcHHHHHhhhccCCccEEEehhhhhhh----cCCccceeeecCCCCcCCCCCCceEEEEEecCcHHHHHHh
Q psy11424 82 RGNIDTRLNKLDKGEYAAIILAAAGLKR----LNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 149 (245)
Q Consensus 82 RGNV~TRL~KL~~g~~DaiiLA~AGL~R----Lg~~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll 149 (245)
. |.+.-++.|.+|++|+++.-..-+.. .+....+ +.. |.....-+++-++++++++.+.+
T Consensus 132 ~-~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~k~~~~l~~~l 195 (232)
T 3i6v_A 132 A-TPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMF---VGD----DVPLGGGVGMGLRESDGELRGKF 195 (232)
T ss_dssp S-SHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTTSSEE---EEE----EEECSSCEEEEECTTCHHHHHHH
T ss_pred C-CHHHHHHHHHcCCcCEEEEChHHHHHHHHhCCCCeEE---ecC----CCCCCCcEEEEEeCCCHHHHHHH
Confidence 5 78899999999999999987665543 2221111 111 11122346777788887666555
No 17
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=93.22 E-value=0.21 Score=42.38 Aligned_cols=95 Identities=9% Similarity=0.069 Sum_probs=60.7
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEE--ecCCCCCCeEEEEcCCCCCCCCCCCCeEeeCcHH--HHHHHHHhCCCCe
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCA--ILKREDPRDAFISNDYISLSTLPKNAVVGTNSLR--RKVLIKSFFPSLI 77 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaa--v~~R~dprDvlv~~~~~~l~~lp~ga~IGTsS~R--R~aql~~~~pdl~ 77 (245)
+|.+|++|+++-|.=-. .....|..+.+ ..-...+..++|.++. .+| +|-+||+++.- -...++.+..+.+
T Consensus 53 ~l~~G~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vlv~~~~---~DL-kGK~Iav~~~~s~~~~ll~~~l~~~~ 127 (280)
T 1zbm_A 53 KAFNAEYEVTAISAHAY-ALLDDKYRILSAGASVGDGYGPVVVAKSE---ISL-DGKRIAVPGRYTTANLLLKLAVEDFE 127 (280)
T ss_dssp HGGGTCCSEEEEEHHHH-TTSTTTEEECSSCCEEESSCCCEEEESSC---CCC-TTCEEEESCTTSHHHHHHHHHCSSCE
T ss_pred HHHcCCCCEEEECHHHH-HHhcCCCcEEeeccccCCCeeEEEEEcCc---hhc-CCCEEEecCCCcHHHHHHHHHhccCc
Confidence 68999999998542111 12245666653 2222244567776653 677 68899985321 1233556677778
Q ss_pred EEeccCcHHHHHhhhccCCccEEEeh
Q psy11424 78 IKSLRGNIDTRLNKLDKGEYAAIILA 103 (245)
Q Consensus 78 ~~~iRGNV~TRL~KL~~g~~DaiiLA 103 (245)
++.+ +.+..+.-|.+|+.||.++-
T Consensus 128 ~~~~--~~~~~~~al~~G~vDa~~~~ 151 (280)
T 1zbm_A 128 PVEM--PFDRIIQAVLDEEVDAGLLI 151 (280)
T ss_dssp EEEC--CGGGHHHHHHTTSSSEEEEC
T ss_pred eEec--CHHHHHHHHHcCCCCEEEEe
Confidence 8776 34778888999999998864
No 18
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=93.20 E-value=0.22 Score=43.32 Aligned_cols=147 Identities=14% Similarity=0.166 Sum_probs=85.0
Q ss_pred ccccCCccEEeecCCCCCC---CCCCCeeEE-EecCCCC-CCeEEEEcCCCCCCCCCCCCeEeeC--cHHHHHHHHHhCC
Q psy11424 2 AIIKGKADLAVHSLKDIPM---NLPSGFILC-AILKRED-PRDAFISNDYISLSTLPKNAVVGTN--SLRRKVLIKSFFP 74 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~---~l~~gL~ia-av~~R~d-prDvlv~~~~~~l~~lp~ga~IGTs--S~RR~aql~~~~p 74 (245)
+|.+|++|+||=|+===|. + .++.++ -+.+--- ....+|.+++. -... .+||-- |.=-..--...++
T Consensus 60 aL~~gk~D~aI~S~~aa~e~~~~--~~r~~~vdFg~~yYv~~h~li~~~~~-~~~i---krVGvd~gS~dq~~lt~~~~~ 133 (231)
T 2ozz_A 60 CLLNGVYDMAVVSRLAAESYLSQ--NNLCIALELGPHTYVGEHQLICRKGE-SGNV---KRVGLDSRSADQKIMTDVFFG 133 (231)
T ss_dssp HHHTTSCSEEEEEHHHHHHHHHH--SCEEEEEECCTTSSSCCEEEEEETTC-GGGC---CEEEECTTCHHHHHHHHHHHT
T ss_pred HHHcCCCCEEEEecccchhhhcc--cCeEEEEEcCCCccccCeEEEEeCCC-cccc---EEEEecCCChhHHHHHhhhcC
Confidence 6899999999988511000 1 123332 4444433 55566665532 1122 588853 3333222223347
Q ss_pred CCeEEeccCcHHHHHhhhccCCccEEEe----hhhhhhhcCCccceeeecCCCCcCCCCCCceEEEEEecCcHHHHHHhh
Q psy11424 75 SLIIKSLRGNIDTRLNKLDKGEYAAIIL----AAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLI 150 (245)
Q Consensus 75 dl~~~~iRGNV~TRL~KL~~g~~DaiiL----A~AGL~RLg~~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll~ 150 (245)
+.++.-+--+..+=+..|.+|+.||+|+ ..|. ...++. . ..+.........+..+ |.+|++|..+.++++
T Consensus 134 g~~Ve~ve~~y~~~i~~L~~G~IDA~Iwn~d~~~a~-~~~~l~--~-~~l~~~~~~~~~~eav--I~v~k~n~~L~~~ln 207 (231)
T 2ozz_A 134 DSDVERVDLSYHESLQRIVKGDVDAVIWNVVAENEL-TMLGLE--A-TPLTDDPRFLQATEAV--VLTRVDDYPMQQLLR 207 (231)
T ss_dssp TSCCEEEECCHHHHHHHHHHTSCCEEEEEC-CHHHH-HHTTEE--E-EECCSCHHHHHTTCEE--EEEETTCHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHcCCccEEEEcCcchhhh-cCCCcc--e-eccccccccccCCceE--EEEECCCHHHHHHHH
Confidence 8887766678889999999999999999 4444 222221 1 1222211123344444 667899999999998
Q ss_pred cCCChhhHHH
Q psy11424 151 PLNHYFSEQT 160 (245)
Q Consensus 151 ~l~~~~t~~~ 160 (245)
+.=+.+.-..
T Consensus 208 ~~I~~~~v~~ 217 (231)
T 2ozz_A 208 AVVDKHALLA 217 (231)
T ss_dssp HHCCHHHHHH
T ss_pred HHhHHHHHHH
Confidence 6555554443
No 19
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=92.38 E-value=0.47 Score=39.60 Aligned_cols=137 Identities=16% Similarity=0.167 Sum_probs=79.9
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCC----CCCCCCCCCCeEeeCcHH-HHHHHHHhCCCC
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY----ISLSTLPKNAVVGTNSLR-RKVLIKSFFPSL 76 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~----~~l~~lp~ga~IGTsS~R-R~aql~~~~pdl 76 (245)
+|.+|++|++. ++-.-| +....+.+.. +- -...-+++.+++ .++++| .|.+||+..-- =...+...+|+.
T Consensus 87 ~l~~G~~D~~~-~~~~t~-~r~~~~~fs~-p~-~~~~~~l~~~~~~~~i~~~~dL-~g~~i~v~~g~~~~~~l~~~~~~~ 161 (267)
T 3mpk_A 87 KLRSGEADMAG-ALFVNS-ARESFLSFSR-PY-VRNGMVIVTRQDPDAPVDADHL-DGRTVALVRNSAAIPLLQRRYPQA 161 (267)
T ss_dssp HHHHTSCSEEE-EEECCG-GGTTTEEECS-CS-EEECEEEEEESSTTSCSSGGGC-TTCEEEEETTCTHHHHHHHHCTTS
T ss_pred HHHCCCccEEe-cccCCh-hhhcceEech-hh-ccCceEEEEECCCCCCCCHHHH-CCCEEEEeCCchhHHHHHHhCCCc
Confidence 57889999976 332222 2223333221 11 112345555543 256667 47777764322 234567789999
Q ss_pred eEEeccCcHHHHHhhhccCCccEEEehhhhhhhcC---CccceeeecCCCCcCCCCCCceEEEEEecCcHHHHHHh
Q psy11424 77 IIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLN---LQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 149 (245)
Q Consensus 77 ~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLg---~~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll 149 (245)
+++.. .|.++-++.|.+|++||+|.-..-+..+- ....+. +..+ ++ ....-+++-++++++++.+.+
T Consensus 162 ~~~~~-~~~~~~l~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~-~~~~---~~-~~~~~~~~~~~k~~~~l~~~l 231 (267)
T 3mpk_A 162 KVVTA-DNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLR-IASA---LD-LPPAEIALATTRGQTELMSIL 231 (267)
T ss_dssp EEEEE-SSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEE-EEEE---CS-SCCEEEEEEEETTCHHHHHHH
T ss_pred EEEEe-CCHHHHHHHHHcCCCCEEEecHHHHHHHHHhcCCCceE-EEec---cC-CCceeEEEEEcCCCHHHHHHH
Confidence 99877 57899999999999999999876543321 111221 1111 11 123567888888887665554
No 20
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=92.16 E-value=0.11 Score=44.88 Aligned_cols=106 Identities=14% Similarity=0.123 Sum_probs=62.6
Q ss_pred ccccCCccEEeecCCCCCCCC--CCCeeEEEecCCCCCCeEEEEc----CCCCCCCCCCCCeEeeCcH-----HHHHH-H
Q psy11424 2 AIIKGKADLAVHSLKDIPMNL--PSGFILCAILKREDPRDAFISN----DYISLSTLPKNAVVGTNSL-----RRKVL-I 69 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l--~~gL~iaav~~R~dprDvlv~~----~~~~l~~lp~ga~IGTsS~-----RR~aq-l 69 (245)
+|.+|++|+++.+.-...... ...+...+.+-+.++.-+++.+ +.++++|| +|.+||+++. .-..+ +
T Consensus 80 ~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~s~~DL-~Gk~i~~~~~gs~~~~~~~~~l 158 (346)
T 3qsl_A 80 AVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNLPGYKGPADL-KGRKIGVTAPGSSTNMVVNFFL 158 (346)
T ss_dssp HHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTTCTTCCSGGGG-TTCEEEESSTTSHHHHHHHHHH
T ss_pred HHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCcccCCCChHHc-CCCEEEECCCCcHHHHHHHHHH
Confidence 678999999987643221111 1235555555555443344444 23467888 5889987641 11112 2
Q ss_pred HHh--C-CCCeEEeccCcHHHHHhhhccCCccEEEehhhhhhh
Q psy11424 70 KSF--F-PSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKR 109 (245)
Q Consensus 70 ~~~--~-pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~R 109 (245)
... . .+++++++.+. ...+.-|.+|+.||.++...-...
T Consensus 159 ~~~G~~~~~v~~~~~~~~-~~~~~al~~G~vDa~~~~~p~~~~ 200 (346)
T 3qsl_A 159 AKHGLKASDVSFIGVGAG-AGAVTALRSGQIDAISNTDPVVSM 200 (346)
T ss_dssp HHTTCCGGGSEEEECCSS-HHHHHHHHHTSCSEEEEETTHHHH
T ss_pred HHcCCCHHHeEEEecCCc-HHHHHHHHcCCccEEEecchhHHH
Confidence 222 2 26788877543 566778889999999986554433
No 21
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=91.81 E-value=0.78 Score=36.85 Aligned_cols=138 Identities=11% Similarity=0.198 Sum_probs=74.3
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcC-C---CCCCCCCCCCeEeeCcH----HHHHHHHHhC
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISND-Y---ISLSTLPKNAVVGTNSL----RRKVLIKSFF 73 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~-~---~~l~~lp~ga~IGTsS~----RR~aql~~~~ 73 (245)
+|.+|++|+++-++---|. ..+.+.+. .+-. ...-+++.++ . .++++| .|.+||+..- .--.++...+
T Consensus 62 ~l~~g~~D~~~~~~~~~~~-r~~~~~~s-~p~~-~~~~~~~~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~l~~~~~~~ 137 (246)
T 4eq9_A 62 GLDADRYNMAVNNLSYTKE-RAEKYLYA-APIA-QNPNVLVVKKDDSSIKSLDDI-GGKSTEVVQATTSAKQLEAYNAEH 137 (246)
T ss_dssp HHHTTSCSEECSSCCCCHH-HHHHEEEC-CCCE-ECCEEEEEETTCCSCSSGGGC-TTCEEEECTTCHHHHHHHHHHHHC
T ss_pred HHhCCCcCEEecccccChh-hhhceeec-ccee-cCceEEEEECCCCCCCCHHHh-CCCEEEEecCccHHHHHHHHHhhC
Confidence 5789999998754321111 11111111 1111 1234555544 2 356666 4777776332 2223333468
Q ss_pred CC--CeEEeccCcHHHHHhhhccCCccEEEehhhhhhhc----CCccceeeecCCCCcCCCCCCceEEEEEecCcHHHHH
Q psy11424 74 PS--LIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRL----NLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELME 147 (245)
Q Consensus 74 pd--l~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RL----g~~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ 147 (245)
|+ ++++....|.+.-++.|.+|++|+++....-+..+ ++. .+. .... |-.-+..+++-++++++++.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~-~~~-~~~~----~~~~~~~~~~~~~k~~~~l~~ 211 (246)
T 4eq9_A 138 TDNPTILNYTKADFQQIMVRLSDGQFDYKIFDKIGVETVIKNQGLD-NLK-VIEL----PSDQQPYVYPLLAQGQDELKS 211 (246)
T ss_dssp TTSCCEEEECCCCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHHTCT-TEE-EEEC----CCSSCCEECCEEETTCHHHHH
T ss_pred CCcceEEEecCCCHHHHHHHHHcCCceEEEecHHHHHHHHHhCCCC-Cce-EecC----cCCCCCcEEEEEcCCCHHHHH
Confidence 85 45554457999999999999999999977665433 332 121 1111 111122456667888876555
Q ss_pred Hh
Q psy11424 148 ML 149 (245)
Q Consensus 148 ll 149 (245)
.+
T Consensus 212 ~l 213 (246)
T 4eq9_A 212 FV 213 (246)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 22
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=91.72 E-value=0.49 Score=38.98 Aligned_cols=100 Identities=22% Similarity=0.316 Sum_probs=59.0
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCC----CCCCCCCCCCeEeeCc-HHHHHHHHHhCCCC
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY----ISLSTLPKNAVVGTNS-LRRKVLIKSFFPSL 76 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~----~~l~~lp~ga~IGTsS-~RR~aql~~~~pdl 76 (245)
+|.+|++|+++.++-.-|. ..+-+.+ ..+--..+.=+++.++. .++.+| .|.+||+.. .--...+...+|+.
T Consensus 69 ~l~~g~~d~~~~~~~~t~e-R~~~~~f-s~py~~~~~~~~v~~~~~~~~~~~~dl-~g~~i~v~~g~~~~~~l~~~~~~~ 145 (243)
T 4h5g_A 69 SLQTGKADLAVAGISATDE-RKEVFDF-SIPYYENKISFLVHKADVEKYKDLTSL-ESANIAAQKGTVPESMVKEQLPKA 145 (243)
T ss_dssp HHHTTSCSEECSSCBCCHH-HHTTEEE-CSCSBCCCEEEEEEGGGTTTCCSHHHH-HTSEEEEETTSHHHHHHHHHCTTS
T ss_pred HHHcCCCCcccccccCChh-HccEEEc-cCccccCcccccccccccccccccccC-CCCEEEecCCcHHHHHHHHhcccc
Confidence 5778999999877643321 1111211 11111222222333321 233444 466776543 22345677889999
Q ss_pred eEEeccCcHHHHHhhhccCCccEEEehhh
Q psy11424 77 IIKSLRGNIDTRLNKLDKGEYAAIILAAA 105 (245)
Q Consensus 77 ~~~~iRGNV~TRL~KL~~g~~DaiiLA~A 105 (245)
+++... |.++-++.|.+|++|+++.-..
T Consensus 146 ~i~~~~-~~~~~~~~l~~GrvD~~~~d~~ 173 (243)
T 4h5g_A 146 QLTSLT-NMGEAVNELQAGKIDAVHMDEP 173 (243)
T ss_dssp EEEEES-CHHHHHHHHHHTSCSEEEEEHH
T ss_pred eeEEeC-CHHHHHHHHHcCCccEEEecHH
Confidence 998775 7788899999999999997554
No 23
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=91.46 E-value=0.31 Score=41.14 Aligned_cols=95 Identities=15% Similarity=0.175 Sum_probs=60.0
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEe---cCCCCCCeEEEEcCCCCCCCCCCCCeEeeCcHHH--HHHHHHhCCCC
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAI---LKREDPRDAFISNDYISLSTLPKNAVVGTNSLRR--KVLIKSFFPSL 76 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav---~~R~dprDvlv~~~~~~l~~lp~ga~IGTsS~RR--~aql~~~~pdl 76 (245)
+|.+|++|+++-|.=-. ....+.+.+.++ .. .....++|+++. +.+| +|-+||+++.-- ...++.+....
T Consensus 45 al~~G~~D~~~~~~~~~-~~~~~~~~i~~~~~~~~-~~~~~~lv~~~~--~~dL-kGk~Ia~~~~~~~~~~ll~~ll~~~ 119 (272)
T 2czl_A 45 WALEGRLPLTKLSYAAY-AQVRDRYVALRSGGALG-RGVGPLVVARGP--LQAL-EGLRVAVPGRHTTAYFLLSLYAQGF 119 (272)
T ss_dssp HHHTTCCSEEEEEHHHH-TTCTTTEEECSSSCEEE-SSCCCEEEESSC--CSCC-TTCEEEESCTTSHHHHHHHHHCSSC
T ss_pred HHHcCCCCEEEecHHHH-HhhhCceEEeecccccC-CCCceEEEECCC--hHHh-CCCEEEeCCCCchHHHHHHHHhccC
Confidence 68899999998654111 122333555442 11 123456777753 7888 688999864222 23345555666
Q ss_pred eEEeccCcHHHHHhhhccCCccEEEeh
Q psy11424 77 IIKSLRGNIDTRLNKLDKGEYAAIILA 103 (245)
Q Consensus 77 ~~~~iRGNV~TRL~KL~~g~~DaiiLA 103 (245)
+++.+.. +....-|.+|++||.++.
T Consensus 120 ~~~~~~~--~~~~~al~~G~vDa~~~~ 144 (272)
T 2czl_A 120 VPVEVRY--DRILPMVAQGEVEAGLII 144 (272)
T ss_dssp EEEECCG--GGHHHHHHTTSSSEEEEC
T ss_pred ceeecCh--HHHHHHHHCCCCCEEEEe
Confidence 7777754 477888899999999985
No 24
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=91.16 E-value=0.44 Score=41.95 Aligned_cols=99 Identities=14% Similarity=0.090 Sum_probs=58.9
Q ss_pred ccccCCccEEeecCCCCCC----CCCCCeeEEEecCCCCCCeEEEEcCC---CCCCCCCCCCeEeeC--cHH--HHHH-H
Q psy11424 2 AIIKGKADLAVHSLKDIPM----NLPSGFILCAILKREDPRDAFISNDY---ISLSTLPKNAVVGTN--SLR--RKVL-I 69 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~----~l~~gL~iaav~~R~dprDvlv~~~~---~~l~~lp~ga~IGTs--S~R--R~aq-l 69 (245)
+|.+|++|+++-+. .|. .--..+.+.+..-..++ ..+|+++. +++.+| +|-+||++ |.- -... |
T Consensus 63 al~~G~~D~~~~~~--~~~~~~~~~g~~~~~v~~~~~~~~-~~lvv~~~s~i~s~~DL-kGk~I~v~~gs~~~~~~~~~l 138 (348)
T 3uif_A 63 GFASGKIDFGIYGD--LPPIILNASKPTVQLVAPWGTTSN-SYLVVPKNSTAKSIKDL-KGKKIALHRGRPWELAFSNLL 138 (348)
T ss_dssp HHHTTCCCEEEEES--HHHHHHHHHSCCEEEEEECCCCCC-CEEEEETTCCCCSGGGG-TTSEEEECTTSTHHHHHHHHH
T ss_pred HHHcCCCCEEecCc--HHHHHHHhCCCCEEEEEeccCCCc-eEEEEECCCCCCCHHHc-CCCEEEecCCChHHHHHHHHH
Confidence 67899999999442 221 11123455544444444 45555443 467778 58899774 211 1112 2
Q ss_pred HHhC---CCCeEEeccCcHHHHHhhhccCCccEEEehhhh
Q psy11424 70 KSFF---PSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAG 106 (245)
Q Consensus 70 ~~~~---pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AG 106 (245)
...- .+++++++ +....+.-|.+|++||++.....
T Consensus 139 ~~~Gl~~~~v~~v~~--~~~~~~~al~~G~vDa~~~~~~~ 176 (348)
T 3uif_A 139 QSEGLTFKDFKIVNV--NPQVGAAALASGTVDGFFSLFDS 176 (348)
T ss_dssp HHTTCCGGGSEEECC--CHHHHHHHHHHTSSSEEEESTTH
T ss_pred HHcCCCHHHeEEEEC--CHHHHHHHHHcCCCCEEEechHH
Confidence 2221 24677766 56788999999999999886543
No 25
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=91.10 E-value=0.18 Score=40.71 Aligned_cols=101 Identities=16% Similarity=0.133 Sum_probs=58.9
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCCC----CCCCCCCCCeEeeCcHHH-HHHHHHhC--C
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYI----SLSTLPKNAVVGTNSLRR-KVLIKSFF--P 74 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~~----~l~~lp~ga~IGTsS~RR-~aql~~~~--p 74 (245)
+|.+|++|+++-++---|. ..+.+.+.. +=-.-.-+++.+++. ++++| .|.+||+..--- ...+...+ +
T Consensus 58 ~l~~g~~D~~~~~~~~t~~-r~~~~~~s~--p~~~~~~~l~~~~~~~~~~~~~dL-~g~~v~~~~g~~~~~~l~~~~~~~ 133 (239)
T 1lst_A 58 SLKAKKIDAIISSLSITDK-RQQEIAFSD--KLYAADSRLIAAKGSPIQPTLESL-KGKHVGVLQGSTQEAYANDNWRTK 133 (239)
T ss_dssp HHHTTSCSEECSSCBCCHH-HHHHCEECS--CSBCCCEEEEEETTCCCCSSHHHH-TTCEEEEETTSHHHHHHHHHTGGG
T ss_pred HHhCCCCCEEEECcCcCHH-Hhhceeecc--cceeCceEEEEeCCCCCCCCHHHh-CCCEEEEEcCccHHHHHHHhcccC
Confidence 5779999999865322111 111122211 111233455555433 45556 477787642211 22344444 6
Q ss_pred CCeEEeccCcHHHHHhhhccCCccEEEehhhhh
Q psy11424 75 SLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGL 107 (245)
Q Consensus 75 dl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL 107 (245)
+++++... |.++-++.|..|++|+++.-..-+
T Consensus 134 ~~~~~~~~-~~~~~~~~l~~G~vDa~~~~~~~~ 165 (239)
T 1lst_A 134 GVDVVAYA-NQDLIYSDLTAGRLDAALQDEVAA 165 (239)
T ss_dssp TCEEEEES-SHHHHHHHHHTTSCSEEEEEHHHH
T ss_pred CCeEEEcC-CHHHHHHHHHcCCCCEEEeCcHHH
Confidence 78877654 889999999999999999876554
No 26
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=90.82 E-value=0.14 Score=45.70 Aligned_cols=153 Identities=10% Similarity=0.095 Sum_probs=79.2
Q ss_pred CccccCCccEEe--ecC--CCCCCCC-CCCeeEEEecCCCCCCeEEEEcCCCCCCCCCCCCeEee----CcHHHHHHHHH
Q psy11424 1 MAIIKGKADLAV--HSL--KDIPMNL-PSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGT----NSLRRKVLIKS 71 (245)
Q Consensus 1 ~aLl~g~iDiAV--HSl--KDlP~~l-~~gL~iaav~~R~dprDvlv~~~~~~l~~lp~ga~IGT----sS~RR~aql~~ 71 (245)
+||.+|++|++. |.. ...-..- ...+...+....+ | ..+.+++.+++.+||+|.+|++ |+-=|..+++.
T Consensus 80 ~AL~~G~iD~~~~~~~~~l~~~~~~~~g~~l~~v~~~~~~-p-~g~ys~~iksl~DL~~Gk~IAip~~~s~~~~~l~lL~ 157 (295)
T 1p99_A 80 KALNDGDIDMNAFQHFAFLDQYKKAHKGTKISALSTTVLA-P-LGIYSDKIKDVKKVKDGAKVVIPNDVSNQARALKLLE 157 (295)
T ss_dssp HHHHTTSSSEEEEEEHHHHHHHHHHCTTCCEEEEEEEEEC-C-CEEECSSCSCGGGCCTTCEEEEECSHHHHHHHHHHHH
T ss_pred HHHHcCCCCEEccCCHHHHHHHHHhcCCCCEEEEEeeccc-c-ceeecCCCCChHHcCCCCEEEecCCCcHHHHHHHHHH
Confidence 378999999997 421 0000000 1123333333222 2 3566777889999999999965 44445555543
Q ss_pred hC---------------------C-CCeEEeccCcHHHHHhhhccCCccEEEehhhhhhhcCCccc-eeeecC-CCCcCC
Q psy11424 72 FF---------------------P-SLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKR-IRMLFS-PNQILP 127 (245)
Q Consensus 72 ~~---------------------p-dl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLg~~~~-~~~~l~-~~~~~P 127 (245)
.. | +++++++-..-- .+-| ++.||+++-.-=...-|+... -.-+++ +.....
T Consensus 158 ~~Gli~l~~~~~~~~t~~dI~~np~~v~~v~~~~~~~--~~al--~~VDaa~i~~~~a~~ag~~~~~~~i~~e~~~~~~~ 233 (295)
T 1p99_A 158 AAGLIKLKKDFGLAGTVKDITSNPKHLKITAVDAQQT--ARAL--SDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAV 233 (295)
T ss_dssp HTTSCEECTTCCTTCCGGGEEECTTCCEEEEECGGGT--TGGG--GTSSEEEECHHHHHHTTCCTTTSCSEECCCSSGGG
T ss_pred HCCCccccCCCCCcCChhhhhcCCCceEEEEcCHHHH--HHHh--hcCCEEEECcHHHHHcCCCcccceEEecCCcccCC
Confidence 21 2 578887654322 1223 589999874321222233211 011233 222100
Q ss_pred CCCCceEEEEEec---CcHHHHHHhhcCCChhhHHHH
Q psy11424 128 APGQGAIAIEILD---NRKELMEMLIPLNHYFSEQTV 161 (245)
Q Consensus 128 A~gQGalave~r~---~d~~~~~ll~~l~~~~t~~~v 161 (245)
..-+-.+.+|+ +++.+..+++.+++++...-+
T Consensus 234 --~~~~n~ivvr~~~~~~~~vk~l~~a~~s~ev~~~i 268 (295)
T 1p99_A 234 --KPYINIVAVNDKDLDNKTYAKIVELYHSKEAQKAL 268 (295)
T ss_dssp --GGGEEEEEEEGGGTTCHHHHHHHHHHHSHHHHHHH
T ss_pred --CceeEEEEEeCCccChHHHHHHHHHHCCHHHHHHH
Confidence 01223355664 457788888888877654433
No 27
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=90.82 E-value=0.73 Score=37.58 Aligned_cols=140 Identities=18% Similarity=0.237 Sum_probs=76.8
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCC-----CCCCCCCCCCeEeeCcHHH-HHHHHHhCCC
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY-----ISLSTLPKNAVVGTNSLRR-KVLIKSFFPS 75 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~-----~~l~~lp~ga~IGTsS~RR-~aql~~~~pd 75 (245)
+|.+|++|+++-++-.-|. ..+.+.+.. +=-....+++.++. .++++| +|-+||+..--- ...+...+|+
T Consensus 96 ~l~~g~~D~~~~~~~~~~~-r~~~~~~s~--p~~~~~~~~~~~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~l~~~~~~ 171 (269)
T 4i62_A 96 SVQSGKADLAISGVSKTDE-RSKVFDFST--PYYTAKNKLIVKKSDLATYQSVNDL-AQKKVGAQKGSIQETMAKDLLQN 171 (269)
T ss_dssp HHHTTSCSEECSSCBCCHH-HHTTEEECS--CCEECCEEEEEEGGGTTTCSSGGGG-C-CEEEEETTSHHHHHHHHHCTT
T ss_pred HHhCCCccEEecCCcCCHh-Hhhceeccc--chhhcceEEEEECCccccccCHHHh-CCCeEEEecCchHHHHHHHhCCC
Confidence 5789999998754322221 112222211 11112234544332 356777 477887643322 4456777899
Q ss_pred CeEEeccCcHHHHHhhhccCCccEEEehhhhhhhcCCc-cceeeecCCCCcCCCCCCceEEEEEecCcHHHHHHh
Q psy11424 76 LIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQ-KRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 149 (245)
Q Consensus 76 l~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLg~~-~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll 149 (245)
.+++... +.+.-++.|.+|++|+++....-+..+-.. ... ..... .+ +....--+++.++++++++.+.+
T Consensus 172 ~~~~~~~-~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~-~~~~~-~~-~~~~~~~~~~~~~~~~~~l~~~l 242 (269)
T 4i62_A 172 SSLVSLP-KNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDL-AIADL-NF-EKEQDDSYAVAMKKDSKELKEAV 242 (269)
T ss_dssp SEEEEES-CHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTE-EECSC-CC-CC-CCCEECCEEESSCHHHHHHH
T ss_pred CcEEecC-CHHHHHHHHHcCCCCEEEeChHHHHHHHHhCCCC-eEEee-cc-CCCcccceEEEEeCCCHHHHHHH
Confidence 9988765 789999999999999999876655433111 111 11111 11 11122345677778776654443
No 28
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=89.60 E-value=0.68 Score=38.76 Aligned_cols=137 Identities=13% Similarity=0.122 Sum_probs=75.2
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCC---CCCCCCCCCCeEeeCcHHH-HHHHHH----hC
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY---ISLSTLPKNAVVGTNSLRR-KVLIKS----FF 73 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~---~~l~~lp~ga~IGTsS~RR-~aql~~----~~ 73 (245)
+|.+|++|+++-++-.-| +..+.+.+....- ....+++.+++ .++++| .|.+||+..--- ...+.. ..
T Consensus 78 ~l~~g~~D~~~~~~~~t~-~r~~~~~~s~p~~--~~~~~l~~~~~~~i~sl~dL-~g~~v~~~~g~~~~~~l~~~~~~~~ 153 (287)
T 2vha_A 78 LLQNGTFDFECGSTTNNV-ERQKQAAFSDTIF--VVGTRLLTKKGGDIKDFADL-KGKAVVVTSGTTSEVLLNKLNEEQK 153 (287)
T ss_dssp HHHTTSCSEECSSCBCCH-HHHTTCEEEEEEE--EEEEEEEEETTSSCCSGGGG-TTCEEEEETTSHHHHHHHHHHHHTT
T ss_pred HHHCCCeeEEeccccCCc-chhhcccccceee--ecceEEEEECCCCCCCHHHc-CCCEEEEeCCCcHHHHHHHHhhccC
Confidence 577899999975432211 1112333321111 11235555543 356666 467777632111 112222 23
Q ss_pred CCCeEEeccCcHHHHHhhhccCCccEEEehhhhhhhc----CCccceeeecCCCCcCCCCCCceEEEEEecCcHHHHHHh
Q psy11424 74 PSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRL----NLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 149 (245)
Q Consensus 74 pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RL----g~~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll 149 (245)
++.+++... |.+.-++.|.+|++|+++.....+..+ +....+ ..+.. .....-+++-++++++++.+.+
T Consensus 154 ~~~~~~~~~-~~~~~~~~L~~G~vDa~i~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~k~~~~l~~~l 226 (287)
T 2vha_A 154 MNMRIISAK-DHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNW-DIVGK-----PQSQEAYGCMLRKDDPQFKKLM 226 (287)
T ss_dssp CCCEEEEES-SHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGE-EEESC-----CSCEEEEEEEECTTCHHHHHHH
T ss_pred CCceEEEcC-CHHHHHHHHHcCCeeEEEeChHHHHHHHHhCCCCCce-EecCC-----ccccCceEEEEeCCCHHHHHHH
Confidence 688888765 678889999999999999876554432 222222 22221 1224557888888887665554
No 29
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=89.18 E-value=0.56 Score=38.64 Aligned_cols=94 Identities=13% Similarity=0.055 Sum_probs=52.0
Q ss_pred CCCCCCCCCCeEeeCc----HHHHHHHHHhC-CCCeEEeccCcHHHHHhhhccCCccEEEehhhhhhh----cCCcccee
Q psy11424 47 ISLSTLPKNAVVGTNS----LRRKVLIKSFF-PSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKR----LNLQKRIR 117 (245)
Q Consensus 47 ~~l~~lp~ga~IGTsS----~RR~aql~~~~-pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~R----Lg~~~~~~ 117 (245)
.++++| .|-+||+.. .--...+.... +...+..---|.+.-+..|..|++||+|.-...+.. .+....+.
T Consensus 111 ~~~~dL-~g~~v~v~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~ 189 (243)
T 4gvo_A 111 NSTKDL-AGKRVITSATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVV 189 (243)
T ss_dssp SSGGGG-TTCEEEECTTCHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTSCSBEEECHHHHHHHHHTCSSCEEEE
T ss_pred CchHHh-cCCeEEEecCchHHHHHHHHHHhccccceeccccCChHHHHHHHHcCCccEEEccHHHHHHHHhhCCCceEEe
Confidence 356777 577787642 12222233333 344444334566778999999999999976554433 33322221
Q ss_pred eecCCCCcCCCCCCceEEEEEecCcHHHHHHh
Q psy11424 118 MLFSPNQILPAPGQGAIAIEILDNRKELMEML 149 (245)
Q Consensus 118 ~~l~~~~~~PA~gQGalave~r~~d~~~~~ll 149 (245)
. +.....-+++-++++|+++.+.+
T Consensus 190 ---~-----~~~~~~~~~~~~~k~~~~l~~~i 213 (243)
T 4gvo_A 190 ---G-----DVLSNAKVYFMLGKDETKLSKKV 213 (243)
T ss_dssp ---E-----EEEECCEECCEECTTCHHHHHHH
T ss_pred ---c-----cCCCCCcEEEEEeCCCHHHHHHH
Confidence 1 11122335667788887765554
No 30
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=87.93 E-value=0.23 Score=40.68 Aligned_cols=103 Identities=15% Similarity=0.112 Sum_probs=60.2
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCCC-----CCCCCCC--CCeEeeCcHHHHH-HHHHh-
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYI-----SLSTLPK--NAVVGTNSLRRKV-LIKSF- 72 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~~-----~l~~lp~--ga~IGTsS~RR~a-ql~~~- 72 (245)
+|.+|++|+++.++-.-|. ..+.+.+.. +=-....+++.+++. ++++|.. |.+||+..---.. .|...
T Consensus 67 ~l~~g~~D~~~~~~~~t~~-r~~~~~~s~--p~~~~~~~~~~~~~~~~~i~~~~dL~~~~g~~i~~~~g~~~~~~l~~~~ 143 (257)
T 2q88_A 67 GLQAGRHDAITAGLFMKPE-RCAAVAYSQ--PILCDAEAFALKKGNPLGLKSYKDIADNPDAKIGAPGGGTEEKLALEAG 143 (257)
T ss_dssp HHHTTSCSEECSCCBCCHH-HHTTSEECS--CCCEECEEEEEETTCTTCCCBHHHHHHCTTCCEEECTTSHHHHHHHHTT
T ss_pred HHHCCCcCEEEecccCCHH-HHhcccccc--chhcCceEEEEECCCccCCCCHHHHhccCCceEEEECCcccHHHHHhcC
Confidence 5778999999855322221 111222211 111123456655432 3445532 7788864332222 34443
Q ss_pred CCCCeEEeccCcHHHHHhhhccCCccEEEehhhhhh
Q psy11424 73 FPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLK 108 (245)
Q Consensus 73 ~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~ 108 (245)
.|+.+++... |.+.-++.|..|++|+++.....+.
T Consensus 144 ~~~~~~~~~~-~~~~~~~~l~~grvDa~i~~~~~~~ 178 (257)
T 2q88_A 144 VPRDRVIVVP-DGQSGLKMLQDGRIDVYSLPVLSIN 178 (257)
T ss_dssp CCGGGEEECS-SHHHHHHHHHHTSCSEEEEEHHHHH
T ss_pred CCCceEEEcC-CHHHHHHHHHcCCCcEEEcCHHHHH
Confidence 5777887665 8899999999999999998765543
No 31
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=87.67 E-value=1.2 Score=37.49 Aligned_cols=138 Identities=13% Similarity=0.107 Sum_probs=76.9
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCC---CCCCCCCCCCeEeeCcHH-HHHHHHHhCCCCe
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY---ISLSTLPKNAVVGTNSLR-RKVLIKSFFPSLI 77 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~---~~l~~lp~ga~IGTsS~R-R~aql~~~~pdl~ 77 (245)
+|.+|++|+++-++-.-| +..+.+.+.. +=-....+++.+++ .++++| .|.+||+..-- -...+...+|+.+
T Consensus 101 ~l~~G~~D~~~~~~~~~~-~r~~~~~~s~--p~~~~~~~~~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~l~~~~~~~~ 176 (292)
T 1xt8_A 101 FLKSNKVDIILANFTQTP-QRAEQVDFCS--PYMKVALGVAVPKDSNITSVEDL-KDKTLLLNKGTTADAYFTQNYPNIK 176 (292)
T ss_dssp HHHTTSCSEECSSCBCCH-HHHTTEEECC--CCEEEEEEEEEETTCCCCSSGGG-TTSEEEEETTSHHHHHHHHHCTTSE
T ss_pred HHhCCCeeEEeecCCCCc-chhcceeeec--cceecceEEEEECCCCCCCHHHh-CCCEEEEeCCCcHHHHHHHhCCCce
Confidence 577899999975442111 1122333211 11112234555543 467777 48888864221 1345666778998
Q ss_pred EEeccCcHHHHHhhhccCCccEEEehhhhhhhcCCc-cceeeecCCCCcCCCCCCceEEEEEecCcHHHHHHh
Q psy11424 78 IKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQ-KRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 149 (245)
Q Consensus 78 ~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLg~~-~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll 149 (245)
++.. .+.+.-++.|.+|++|+++....-+..+--. ..+ ..++. .+ .-+..+++-++++++++.+.+
T Consensus 177 ~~~~-~~~~~~~~~L~~G~vDa~~~~~~~~~~~~~~~~~l-~~~~~-~~---~~~~~~~~~~~k~~~~l~~~l 243 (292)
T 1xt8_A 177 TLKY-DQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDF-KMGIK-EL---GNKDVIAPAVKKGDKELKEFI 243 (292)
T ss_dssp EEEE-SSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTE-EEEEE-EE---EEEEEECCEEETTCHHHHHHH
T ss_pred EEEc-CCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCCe-EEccc-cc---ccCceeEEEEeCCCHHHHHHH
Confidence 8765 4788899999999999999976554433111 011 11111 11 112233677788877655544
No 32
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=87.15 E-value=2 Score=35.26 Aligned_cols=137 Identities=8% Similarity=0.079 Sum_probs=75.1
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCC---CCCCCCCCCCeEeeCcHHHHHHHH--------
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY---ISLSTLPKNAVVGTNSLRRKVLIK-------- 70 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~---~~l~~lp~ga~IGTsS~RR~aql~-------- 70 (245)
+|.+|++|+++-++-.-|. ..+.+.+.. +=-...-+++.++. .++++| .|.+||+..---.....
T Consensus 75 ~l~~g~~D~~~~~~~~t~~-r~~~~~fs~--p~~~~~~~~~~~~~~~i~~~~dL-~g~~i~v~~g~~~~~~l~~~~~~~~ 150 (268)
T 3hv1_A 75 ELKNGTIDLIWNGYSVTDE-RKQSADFTE--PYMVNEQVLVTKKSSGIDSVAGM-AGKTLGAQAGSSGYDAFNASPKILK 150 (268)
T ss_dssp HHHHTSCSEECSSCBCCHH-HHTTCEECC--CCEEECEEEEEEGGGCCCSSGGG-TTCCEEEETTCHHHHHHHHCTTTTT
T ss_pred HHHCCCCCEEEecCccCHH-HHhcCcCcH--HHeeCceEEEEECCCCCCCHHHh-CCCEEEEEeCCchHHHHHHhhHHHh
Confidence 5778999999854432221 112222211 11112345555432 456777 57788875444333322
Q ss_pred HhCCCCeEEeccCcHHHHHhhhccCCccEEEehhhhhh----hcCCccceeeecCCCCcCCCCCCceEEEEEecCcHHHH
Q psy11424 71 SFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLK----RLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELM 146 (245)
Q Consensus 71 ~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~----RLg~~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~ 146 (245)
..+|+.+++.. .|.+.-++.|.+|++|+++.-..-+. +.+....+.. +.. . ...--+++-++++++++.
T Consensus 151 ~~~~~~~~~~~-~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~l~~-~~~-~----~~~~~~~~~~~k~~~~l~ 223 (268)
T 3hv1_A 151 DVVANQKVVQY-STFTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYNV-MPA-G----YEGESFAVGARKVDKTLI 223 (268)
T ss_dssp TTSGGGCEEEE-SSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEEE-EEC-S----SCCEEECCEECTTCHHHH
T ss_pred hhcccceEEEe-CCHHHHHHHHHcCCCCEEEeCHHHHHHHHHhCCCCCceEE-CCC-C----CCCCcEEEEEcCCCHHHH
Confidence 22455677765 47888999999999999998766543 3343233321 211 1 112235566688876655
Q ss_pred HHh
Q psy11424 147 EML 149 (245)
Q Consensus 147 ~ll 149 (245)
+.+
T Consensus 224 ~~l 226 (268)
T 3hv1_A 224 KKI 226 (268)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 33
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=86.06 E-value=2.1 Score=34.40 Aligned_cols=136 Identities=11% Similarity=0.079 Sum_probs=71.9
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCC---CCCCCCCCCCeEeeC---cHHHH-HHH-HHhC
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY---ISLSTLPKNAVVGTN---SLRRK-VLI-KSFF 73 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~---~~l~~lp~ga~IGTs---S~RR~-aql-~~~~ 73 (245)
+|.+|++|+++-++-.-| +..+.+.+.. +--. ..-+++.+++ .++++| .|.+||+. +.+.. .++ ...-
T Consensus 96 ~l~~g~~D~~~~~~~~~~-~~~~~~~~~~-p~~~-~~~~~~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~~~~~~~~~g 171 (259)
T 2v25_A 96 LLDNGSVDAVIATFTITP-ERKRIYNFSE-PYYQ-DAIGLLVLKEKKYKSLADM-KGANIGVAQAATTKKAIGEAAKKIG 171 (259)
T ss_dssp HHHTTSCSEECSSCBCCH-HHHTTEEECS-CSEE-EEEEEEEEGGGCCCSGGGC-TTCEEEEETTCSHHHHHHHHHHHTT
T ss_pred HHhCCCCCEEEecCccCH-HHHhcCcccc-ccee-CceEEEEeCCCCCCCHHHh-CCCEEEEecCCchHHHHHHHHHhcC
Confidence 577899999986542111 1223333321 1111 1234444432 467777 46677752 22221 111 1111
Q ss_pred CCCeEEeccCcHHHHHhhhccCCccEEEehhhhhhhcCCccceeeecCCCCcCCCCCCceEEEEEecCcHHHHHHh
Q psy11424 74 PSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 149 (245)
Q Consensus 74 pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLg~~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll 149 (245)
-+.+++.. .|.++-++.|.+|++|+++....-+..+--... ..++ . .....-+++-++++++++.+.+
T Consensus 172 ~~~~~~~~-~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~--~~~~-~----~~~~~~~~~~~~k~~~~l~~~~ 239 (259)
T 2v25_A 172 IDVKFSEF-PDYPSIKAALDAKRVDAFSVDKSILLGYVDDKS--EILP-D----SFEPQSYGIVTKKDDPAFAKYV 239 (259)
T ss_dssp CCCEEEEE-SSHHHHHHHHHTTSSSEEEEEHHHHTTTCCTTE--EECS-C----CCSEEEECCEEETTCHHHHHHH
T ss_pred CceeEEEe-CCHHHHHHHHHcCCCcEEEecHHHHHHHHHhCC--Cccc-c----ccccceeEEEEcCCCHHHHHHH
Confidence 22356544 588999999999999999997766554422211 1221 1 1223456777888876555544
No 34
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=86.04 E-value=0.83 Score=36.29 Aligned_cols=135 Identities=10% Similarity=0.018 Sum_probs=76.5
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCC----CCCCCCCCCCeEeeCcHHH-HHHHHHhCCCC
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY----ISLSTLPKNAVVGTNSLRR-KVLIKSFFPSL 76 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~----~~l~~lp~ga~IGTsS~RR-~aql~~~~pdl 76 (245)
+|.+|++|++ -++---| +....+.+.... . ....+++.++. .++++| .|.+||+..--- ...+....|+.
T Consensus 65 ~l~~g~~D~~-~~~~~~~-~r~~~~~~s~p~-~-~~~~~~~~~~~~~~~~~~~dL-~g~~i~~~~g~~~~~~l~~~~~~~ 139 (234)
T 3h7m_A 65 ALKSGRVDVL-QGISWSE-KRARQIDFTPPH-T-IVYHAIFARRDSPPAAGLEDL-RGRKVALHRDGIMHEYLAERGYGK 139 (234)
T ss_dssp HHHTTSSSEE-EEEECCH-HHHTTEEEEEEE-E-EEEEEEEEESSSCCCSSGGGG-TTSCEEEETTSHHHHHHHTTTCGG
T ss_pred HHhCCCeeEE-EeccCCH-hHHhhcCCCccc-c-ccceEEEEECCCCCCCCHHHh-CCCEEEEEeCchHHHHHHhcCCCc
Confidence 5778999995 3332111 112223322111 1 12245555443 356677 577777754322 34566777888
Q ss_pred eEEeccCcHHHHHhhhccCCccEEEehhhhh----hhcCCccceeeecCCCCcCCCCCCceEEEEEecCcHHHHHHh
Q psy11424 77 IIKSLRGNIDTRLNKLDKGEYAAIILAAAGL----KRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 149 (245)
Q Consensus 77 ~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL----~RLg~~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll 149 (245)
+++... |.+.-++.|.+|++|+++....-+ ++.++.. +. .+.. .....-+++-++++++++.+.+
T Consensus 140 ~~~~~~-~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~-~~-~~~~-----~~~~~~~~~~~~~~~~~l~~~l 208 (234)
T 3h7m_A 140 DLVLTP-TPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTN-LV-PVAR-----SIAAQRYGYAVRQGDAELLARF 208 (234)
T ss_dssp GEEEES-SHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTCTT-EE-EEEE-----EEEEEEEEEEEETTCHHHHHHH
T ss_pred eEEEeC-CHHHHHHHHHcCCceEEEeccHHHHHHHHhcCCCc-eE-Eecc-----ccCCCceEEEEeCCCHHHHHHH
Confidence 888765 778899999999999999866554 3334432 21 1110 1112346778888887665554
No 35
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=85.88 E-value=2.8 Score=34.04 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=63.1
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCC----CCCCCCCCCCeEeeCcHHH-HHHHHHhCCCC
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY----ISLSTLPKNAVVGTNSLRR-KVLIKSFFPSL 76 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~----~~l~~lp~ga~IGTsS~RR-~aql~~~~pdl 76 (245)
+|.+|++|+++-++-.-|. ..+.+.+.. +=-....+++.++. .++++| .|.+||+..--- ...+...+|+.
T Consensus 77 ~l~~g~~D~~~~~~~~~~~-r~~~~~~s~--p~~~~~~~~~~~~~~~~i~~~~dL-~g~~i~v~~g~~~~~~l~~~~~~~ 152 (249)
T 4f3p_A 77 ALQTQNIDVALSGMTIKEE-RRKAIDFSD--PYYDSGLAAMVQANNTTIKSIDDL-NGKVIAAKTGTATIDWIKAHLKPK 152 (249)
T ss_dssp HHHTTSCSEEEEEEECCHH-HHTTEEECS--CCEEEEEEEEEETTCCSCCSSGGG-TTSEEEEETTSHHHHHHHHHCCCS
T ss_pred HHHCCCCCEEEeccccCHH-HHcCcceec--ceeeccEEEEEECCCCCcCChHHh-CCCEEEEeCCChHHHHHHhcCCCc
Confidence 5779999998754322211 111121110 01112234444432 356777 577887643322 34567778999
Q ss_pred eEEeccCcHHHHHhhhccCCccEEEehhhhhhh
Q psy11424 77 IIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKR 109 (245)
Q Consensus 77 ~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~R 109 (245)
+++... |.+.-++.|..|++|+++....-+..
T Consensus 153 ~~~~~~-~~~~~~~~L~~GrvDa~i~~~~~~~~ 184 (249)
T 4f3p_A 153 EIRQFP-NIDQAYLALEAGRVDAAMHDTPNVLF 184 (249)
T ss_dssp EEEEES-SHHHHHHHHHTTSSSEEEEEHHHHHH
T ss_pred eEEEcC-CHHHHHHHHHcCCeeEEEeCcHHHHH
Confidence 988775 88999999999999999987766544
No 36
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=85.34 E-value=1.8 Score=36.87 Aligned_cols=95 Identities=13% Similarity=0.100 Sum_probs=53.4
Q ss_pred ccccCCccEEeecCCCCCCCCCCC--eeEEEecCCCCCCeEEEEcC---CCCCCCCCCCCeEeeCcH---H-HHHHH-HH
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSG--FILCAILKREDPRDAFISND---YISLSTLPKNAVVGTNSL---R-RKVLI-KS 71 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~g--L~iaav~~R~dprDvlv~~~---~~~l~~lp~ga~IGTsS~---R-R~aql-~~ 71 (245)
+|.+|++|+++-+.--+-.....| +...+.+-..++ -++++++ -+++.+| +|-+||+++. . --..+ +.
T Consensus 50 ~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~l~~~~~s~i~s~~DL-~Gk~i~~~~~~~~~~~~~~~l~~ 127 (302)
T 3ix1_A 50 LTASGAIPLALSYQPDVILARSKDLPVVSVASVVRSPL-NHVMFLAEQDFDSPADL-VGLTVGYPGIPVNEPILKTMVEA 127 (302)
T ss_dssp HHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECSCC-EEEEEEGGGCCSSGGGG-TTSEEEECSCTTHHHHHHHHHHH
T ss_pred HHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEeccCC-EEEEEECCCCCCChHHc-CCCEEEeCCCcchHHHHHHHHHH
Confidence 688999999987621100011122 443443444444 5666554 3467777 5888887542 1 11122 22
Q ss_pred h--C-CCCeEEeccCcHHHHHhhhccCCccEEE
Q psy11424 72 F--F-PSLIIKSLRGNIDTRLNKLDKGEYAAII 101 (245)
Q Consensus 72 ~--~-pdl~~~~iRGNV~TRL~KL~~g~~Daii 101 (245)
. . .+++++++..+. +.-|.+|++||++
T Consensus 128 ~Gl~~~~v~~~~~~~~~---~~al~~G~vDa~~ 157 (302)
T 3ix1_A 128 AGGDYEQVHLMDVGFEL---GASIVSGRADAVV 157 (302)
T ss_dssp TTCCGGGCEEEECTTCH---HHHHHHSSSSEEE
T ss_pred cCCCHHHeEEEecCccH---HHHHhCCCCCEEE
Confidence 1 2 258888885554 4556689999987
No 37
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=84.87 E-value=0.83 Score=36.25 Aligned_cols=129 Identities=13% Similarity=0.157 Sum_probs=69.5
Q ss_pred ccccCCccEEeecCCCCCCC-CCCCeeEEEecCCCCCCeEEEEcC-----CCCCCCCCCCCeEeeCcHHHHH-HHHHhCC
Q psy11424 2 AIIKGKADLAVHSLKDIPMN-LPSGFILCAILKREDPRDAFISND-----YISLSTLPKNAVVGTNSLRRKV-LIKSFFP 74 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~-l~~gL~iaav~~R~dprDvlv~~~-----~~~l~~lp~ga~IGTsS~RR~a-ql~~~~p 74 (245)
+|.+|++|+++-++-.-|.. .+..+.+.. +=-...-+++.++ ..++++| .|.+||+..---.. .+...
T Consensus 60 ~l~~g~~D~~~~~~~~~~~r~~~~~~~~s~--p~~~~~~~~~~~~~~~~~i~~~~dL-~g~~v~~~~g~~~~~~l~~~-- 134 (233)
T 1ii5_A 60 AVAEGELDILIGPISVTPERAAIEGITFTQ--PYFSSGIGLLIPGTATPLFRSVGDL-KNKEVAVVRDTTAVDWANFY-- 134 (233)
T ss_dssp HHHTTSCSEEEEEEECCHHHHTSTTEEECC--CCEEEEEEEEEEGGGTTTCSSGGGG-TTCEEEEETTSHHHHHHHHT--
T ss_pred HHHCCCcCEEEeeeecCccccccceeEEcc--ceeecCeEEEEECCCCCCCCCHHHh-CCCeEEEECCccHHHHHHHc--
Confidence 57899999987643211111 012333220 1011123444443 2456777 57788764322222 33333
Q ss_pred CCeEEeccCcHHHHHhhhccCCccEEEehhhhhhhc----CCccceeeecCCCCcCCCCCCceEEEEEecCcH
Q psy11424 75 SLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRL----NLQKRIRMLFSPNQILPAPGQGAIAIEILDNRK 143 (245)
Q Consensus 75 dl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RL----g~~~~~~~~l~~~~~~PA~gQGalave~r~~d~ 143 (245)
+++++.. .|.++-++.|.+|++|+++....-+..+ +. ..+ ..++. .....-+++-++++++
T Consensus 135 ~~~~~~~-~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~-~~~-~~~~~-----~~~~~~~~~~~~k~~~ 199 (233)
T 1ii5_A 135 QADVRET-NNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPN-LNL-EVTEI-----RVSLEPYGFVLKENSP 199 (233)
T ss_dssp TCEEEEE-SSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGG-GCE-EECSC-----CSEEEEEEEEEETTCT
T ss_pred CCCeEEc-CCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCC-CcE-EEeCc-----cccccceEEEEcCCch
Confidence 5676654 5789999999999999999876655433 22 122 12221 1123456777888764
No 38
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=84.51 E-value=0.73 Score=36.34 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=56.1
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcC-------CCCCCCCCCCCeEeeCcHHHHH-HHHHhC
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISND-------YISLSTLPKNAVVGTNSLRRKV-LIKSFF 73 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~-------~~~l~~lp~ga~IGTsS~RR~a-ql~~~~ 73 (245)
+|.+|++|+++-++--.|. ..+.+.... +=-....+++.++ ..++++| .|.+||+..---.. .+..
T Consensus 56 ~l~~g~~D~~~~~~~~~~~-r~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~dL-~g~~i~~~~g~~~~~~l~~-- 129 (228)
T 2pyy_A 56 AIKDNKVNLGIAAISITAE-REQNFDFSL--PIFASGLQIMVRNLESGTGDIRSIDDL-PGKVVATTAGSTAATYLRE-- 129 (228)
T ss_dssp HHHTTSCSEECSSCBCCHH-HHHHSEECS--CSEEEEEEEEEEC-----CCCCSGGGC-TTCEEEEETTSHHHHHHHH--
T ss_pred HHHCCCcCEEEeccccCHH-HHccceecc--cchhcceEEEEECCccccCCcCCHHHc-CCCeEEEEcCcHHHHHHHH--
Confidence 5779999999754321111 111111110 0001122334332 2467777 57788864222222 3333
Q ss_pred CCCeEEeccCcHHHHHhhhccCCccEEEehhhhhh
Q psy11424 74 PSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLK 108 (245)
Q Consensus 74 pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~ 108 (245)
++++++.. .|..+-++.|.+|++|+++....-+.
T Consensus 130 ~~~~~~~~-~~~~~~~~~l~~g~~D~~~~~~~~~~ 163 (228)
T 2pyy_A 130 HHISVLEV-PKIEEAYKALQTKKADAVVFDAPVLL 163 (228)
T ss_dssp TTCEEEEE-SSHHHHHHHHHTTSSSEEEEEHHHHH
T ss_pred cCCceEec-CCHHHHHHHHHcCCCCEEEecHHHHH
Confidence 56776654 58899999999999999998765543
No 39
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=84.32 E-value=7.3 Score=33.34 Aligned_cols=142 Identities=20% Similarity=0.228 Sum_probs=80.8
Q ss_pred ccccCCccEEee--------cCCCCCCC--------------CCC--CeeEEEecCCCCCCeEEEEc-------CCCCCC
Q psy11424 2 AIIKGKADLAVH--------SLKDIPMN--------------LPS--GFILCAILKREDPRDAFISN-------DYISLS 50 (245)
Q Consensus 2 aLl~g~iDiAVH--------SlKDlP~~--------------l~~--gL~iaav~~R~dprDvlv~~-------~~~~l~ 50 (245)
||.+|+||+++- =++..|.. +++ ++...+... .+..+.|+.+ +-+++.
T Consensus 51 al~~G~iD~~~eytGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~l~V~~~~a~~~~i~si~ 129 (275)
T 1sw5_A 51 ALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLG-FRDDYALAVRADWAEENGVEKIS 129 (275)
T ss_dssp HHHHTSSSEEEEEHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHCCEEEEEEE-EECCEEEEEEHHHHHHHTCCBGG
T ss_pred HHHcCCCcEEEeehhhHHHHhcCCCCccCCCHHHHHHHHHHHhhhcCCeEEeccCC-CCCeeEEEEeHHHHHHcCCCcHH
Confidence 788999999983 34443331 111 677776653 2456677665 346788
Q ss_pred CCCCC---CeEeeCcH--HHH----HHHHHhCCCC-eEEeccCcHHHHHhhhccCCccEEEehh--hhhhhcCCccceee
Q psy11424 51 TLPKN---AVVGTNSL--RRK----VLIKSFFPSL-IIKSLRGNIDTRLNKLDKGEYAAIILAA--AGLKRLNLQKRIRM 118 (245)
Q Consensus 51 ~lp~g---a~IGTsS~--RR~----aql~~~~pdl-~~~~iRGNV~TRL~KL~~g~~DaiiLA~--AGL~RLg~~~~~~~ 118 (245)
||..- .++|+++- -|. ..++.+-=+. +++++ +.......+.+|++|++..-. .-+...++ ..
T Consensus 130 DL~g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl~~~~~~~~--~~~~~~~Al~~g~vd~~~~~~p~~~~~~~~l----~~ 203 (275)
T 1sw5_A 130 DLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQM--EPTLMYEAIKNKQVDVIPAYTTDSRVDLFNL----KI 203 (275)
T ss_dssp GGTTTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEEC--CGGGHHHHHHTTSCSEEEEETTCHHHHHTTE----EE
T ss_pred HHHhhhcceEeccCcccccccchHHHHHHhcCCCcccccCC--CHHHHHHHHHcCCCeEEEEeCCCcchhcCCe----EE
Confidence 88543 37887753 110 1222221112 55555 445678889999999998732 22333332 12
Q ss_pred ecCCCCcCCCCCCceEEEEEecCc---HHHHHHhhcCC
Q psy11424 119 LFSPNQILPAPGQGAIAIEILDNR---KELMEMLIPLN 153 (245)
Q Consensus 119 ~l~~~~~~PA~gQGalave~r~~d---~~~~~ll~~l~ 153 (245)
.-++..+.|. .-+...+|.+- +++.++|+.+.
T Consensus 204 L~d~~~~~~~---~~~~~v~~~~~~~~P~~~~~l~~l~ 238 (275)
T 1sw5_A 204 LEDDKGALPP---YDAIIIVNGNTAKDEKLISVLKLLE 238 (275)
T ss_dssp CBCTTCCSCC---CEEEEEECTTGGGCHHHHHHHHTTT
T ss_pred ccCCcccCCc---cceeeeeehhhccChHHHHHHHHHH
Confidence 3344555554 33455667531 67888888887
No 40
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=84.08 E-value=1.8 Score=36.00 Aligned_cols=136 Identities=13% Similarity=0.079 Sum_probs=70.1
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCC-----CCCCCCCCCCeEeeCcHHHHHHHHHhCCCC
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY-----ISLSTLPKNAVVGTNSLRRKVLIKSFFPSL 76 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~-----~~l~~lp~ga~IGTsS~RR~aql~~~~pdl 76 (245)
+|.+|++|+++-++---| +..+.+.+.. +=-...-+++.++. .++++| .|.+||+..---.......++.
T Consensus 78 ~l~~G~~D~~~~~~~~t~-~r~~~~~fs~--p~~~~~~~l~~~~~~~~~i~~~~dL-~g~~i~v~~g~~~~~~l~~~~~- 152 (271)
T 2iee_A 78 AVNSGQVDAAANDIDVTK-DREEKFAFST--PYKYSYGTAIVRKDDLSGIKTLKDL-KGKKAAGAATTVYMEVARKYGA- 152 (271)
T ss_dssp HHHHTSSSEECSSCBCCH-HHHTTEEECC--CSEEEEEEEEECTTTGGGCSSGGGG-TTCEEESCTTSHHHHHHHHTTC-
T ss_pred HHHCCCcCEEEeCCcCCh-hhccceEEee--cceeCCeEEEEECCCCCCCCCHHHh-CCCEEEEeCCccHHHHHHHcCC-
Confidence 567899999987652111 1112222211 00111234555433 356777 6788886433333333444554
Q ss_pred eEEeccCcHHHH--HhhhccCCccEEEehh-hhhhhcC---CccceeeecCCCCcCCCCCCceEEEEEecCcHHHHHHh
Q psy11424 77 IIKSLRGNIDTR--LNKLDKGEYAAIILAA-AGLKRLN---LQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 149 (245)
Q Consensus 77 ~~~~iRGNV~TR--L~KL~~g~~DaiiLA~-AGL~RLg---~~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll 149 (245)
+++.. .|.+.- ++.|..|++| .+... ....-+. -...+ ..+.. +.....-+++-++++++++.+.+
T Consensus 153 ~~~~~-~~~~~~~l~~~L~~GrvD-~i~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~k~~~~l~~~l 224 (271)
T 2iee_A 153 KEVIY-DNATNEQYLKDVANGRTD-VILNDYYLQTLALAAFPDLNI-TIHPD----IKYMPNKQALVMKKSNAALQKKM 224 (271)
T ss_dssp EEEEC-SSCCHHHHHHHHHHTSSC-EEEEEHHHHHHHHHHCTTSSC-EECSS----CCEEEEEECCEEETTCHHHHHHH
T ss_pred ceEEe-CChhhHHHHHHHHcCCcc-EEeccHHHHHHHHHhCCCCce-EEecC----CCcccceEEEEEcCCCHHHHHHH
Confidence 66665 466777 9999999999 55543 2222111 11122 12211 11233456777888877665554
No 41
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=82.57 E-value=1.6 Score=37.94 Aligned_cols=96 Identities=9% Similarity=0.065 Sum_probs=55.8
Q ss_pred ccccCCccEEeecCCCC-C--CCCCCCeeEEEecCCCCCC-eEEEEc-C---CCCCCCCCCCCeEeeCc---HHHH--HH
Q psy11424 2 AIIKGKADLAVHSLKDI-P--MNLPSGFILCAILKREDPR-DAFISN-D---YISLSTLPKNAVVGTNS---LRRK--VL 68 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDl-P--~~l~~gL~iaav~~R~dpr-Dvlv~~-~---~~~l~~lp~ga~IGTsS---~RR~--aq 68 (245)
+|.+|++|+++-++=-+ . ..-.+.+.+.+..-+. |. -+++.+ + -+++.+| -+||+++ .--. ..
T Consensus 61 al~~G~~D~~~~~~~~~~~~~~~g~~~~~~v~~~~~~-~~~~~i~v~~ds~~i~s~~DL---K~i~~~~~gs~~~~~~~~ 136 (321)
T 2x7q_A 61 LLNSNEVDIAIGLTEAFIADIAKGNENIHVLDTYVKS-PLLWAVSTGSNRDDVTDAKQL---KRIGVSRIGSGSYVMSFV 136 (321)
T ss_dssp HHHTTSCSEEEEEHHHHHHHHHTTCTTEEEEEEEECS-CCEEEEEEESSCTTCSSGGGC---CEEEESSTTSHHHHHHHH
T ss_pred HHHcCCccEEecCcHHHHHHHHCCCCcEEEEEEecCC-CcceEEEECCCCCCCCChHHc---ceEEeeCCCcHHHHHHHH
Confidence 67899999998543101 0 0111126665554443 44 345543 2 2467888 5788754 1111 12
Q ss_pred H-HH--hCCCCeEEeccCcHHHHHhhhccC----CccEEEe
Q psy11424 69 I-KS--FFPSLIIKSLRGNIDTRLNKLDKG----EYAAIIL 102 (245)
Q Consensus 69 l-~~--~~pdl~~~~iRGNV~TRL~KL~~g----~~DaiiL 102 (245)
+ +. +-|+++++.+. +....+.-|.+| +.||++.
T Consensus 137 l~~~~Gl~~dv~~v~~~-~~~~~~~al~~G~~~~~vDa~~~ 176 (321)
T 2x7q_A 137 LAHQLGVPSFDQFQVLS-NFKNLRDSVNLKDGVEGSDAFMW 176 (321)
T ss_dssp HHHHHTSCCCCEEEECC-SHHHHHHHHTTCTTSCCCSEEEE
T ss_pred HHHhcCCCcceEEEEcC-ChHHHHHHHHcCCCccceEEEEe
Confidence 2 22 22367888775 677888999999 9999764
No 42
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=81.49 E-value=10 Score=33.06 Aligned_cols=144 Identities=19% Similarity=0.187 Sum_probs=85.3
Q ss_pred ccccCCccEEe--ec--C----CCCCCCCCCCeeEEEecCCCCCCeEEEEcCCCCCCCCCCCCeEeeCc----HHHHHHH
Q psy11424 2 AIIKGKADLAV--HS--L----KDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNS----LRRKVLI 69 (245)
Q Consensus 2 aLl~g~iDiAV--HS--l----KDlP~~l~~gL~iaav~~R~dprDvlv~~~~~~l~~lp~ga~IGTsS----~RR~aql 69 (245)
||.+|++|+.. |. | |+-. -.|+.++-..-+ | =.+.|++.+++.+||.|++|+.+. .=|.-+|
T Consensus 47 AL~~G~iD~n~fQh~pyl~~~~k~~g----~~Lv~v~~~~~~-p-~glYS~kiksl~dL~~Ga~IAIpnd~sn~~RaL~l 120 (246)
T 4ef1_A 47 ALESGDIDANYFQHVPFFNEAVKEND----YDFVNAGAIHLE-P-VGLYSKKYKSLQEIPDGSTIYVSSSVSDWPRVLTI 120 (246)
T ss_dssp HHHHTSCSEEEEEEHHHHHHHHHHHT----CCEEEEEEEEEC-C-CEEECSSCSSGGGSCTTCEEEEESCGGGHHHHHHH
T ss_pred HHHCCCCCEEecCCHHHHHHHHHHCC----CCEEEEeecccc-c-eEEecCCCCCHHHcCCCCEEEeecCCchHHHHHHH
Confidence 78899999986 32 1 2111 123333322222 3 356788899999999999999755 3455555
Q ss_pred HHh------CC-----------------CCeE-EeccCcHHHHHhhhccCCccEEEehhhhhhhcCCcc---ceeeecCC
Q psy11424 70 KSF------FP-----------------SLII-KSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQK---RIRMLFSP 122 (245)
Q Consensus 70 ~~~------~p-----------------dl~~-~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLg~~~---~~~~~l~~ 122 (245)
+.. .+ +++| +.+-.. +=-+-|.+|++|+.++---=...-|+.. .+ +++.
T Consensus 121 L~~~GLI~Lk~~~~~~~~t~~DI~~Npk~l~~~~el~aa--ql~~al~dg~vDaavin~n~a~~agl~p~~dal--~~E~ 196 (246)
T 4ef1_A 121 LEDAGLITLKEGVDRTTATFDDIDKNTKKLKFNHESDPA--IMTTLYDNEEGAAVLINSNFAVDQGLNPKKDAI--ALEK 196 (246)
T ss_dssp HHHTTSEEECTTCCGGGCCGGGEEEETTCCEEEEEECGG--GHHHHHHTTCSSEEEECHHHHHHTTCCHHHHCS--EECS
T ss_pred HHHCCCeeecCCCCcCcCCHhHHhcCCCccEEeeecCHH--HHHHHhccccccEEEEechHHHHcCCCCccCce--EEcC
Confidence 542 11 3577 777543 2234578899999887532233334432 11 1221
Q ss_pred CCcCCCCCCceEEEEEec---CcHHHHHHhhcCCChhhHHH
Q psy11424 123 NQILPAPGQGAIAIEILD---NRKELMEMLIPLNHYFSEQT 160 (245)
Q Consensus 123 ~~~~PA~gQGalave~r~---~d~~~~~ll~~l~~~~t~~~ 160 (245)
.. .+=+.-|.+|+ |++++..+.+.++.++...-
T Consensus 197 ~~-----~~y~n~i~vr~~~~~~~~~k~lv~~~~s~~v~~~ 232 (246)
T 4ef1_A 197 ES-----SPYANIIAVRKEDENNENVKKLVKVLRSKEVQDW 232 (246)
T ss_dssp CC-----GGGCEEEEEEGGGTTCHHHHHHHHHHHSHHHHHH
T ss_pred CC-----CCeEEEEEEeccccCCHHHHHHHHHHcCHHHHHH
Confidence 11 23455667775 56889999999988876443
No 43
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=78.15 E-value=4 Score=37.23 Aligned_cols=98 Identities=10% Similarity=0.147 Sum_probs=58.0
Q ss_pred ccccCC----ccEEeecCCCCCC---------CCCCCeeEEEecCCCCCCeEEEEc-CC------CCC-------CCCCC
Q psy11424 2 AIIKGK----ADLAVHSLKDIPM---------NLPSGFILCAILKREDPRDAFISN-DY------ISL-------STLPK 54 (245)
Q Consensus 2 aLl~g~----iDiAVHSlKDlP~---------~l~~gL~iaav~~R~dprDvlv~~-~~------~~l-------~~lp~ 54 (245)
+|..|+ +|+++-+ -++|. .....+.+.+.+.+. . .+++.+ +. .++ .+| +
T Consensus 79 al~~G~~~~giD~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-~~i~v~~~~~~~~i~~s~~~l~~~~~dL-k 154 (417)
T 2g29_A 79 NLVLGSASGGIDGAHIL-TPMPYLITMGTVTDGKPTPMYILARLNVN-G-QGIQLGNNYKDLKVGTDAAPLKEAFAKV-T 154 (417)
T ss_dssp HHHHCGGGTSCSEEEEE-THHHHHHHHCTTSSSCCCCEEEEEECCBS-C-EEEEECGGGGGGCCCSCCTTHHHHHHTS-S
T ss_pred HHHCCCCcCCcCeEeec-chHHHHHHhCcccCCCCCCEEEEEEeccC-C-eEEEEecchhhccccCCHHHHHHHHHhc-C
Confidence 678899 9999753 24441 113345656655433 2 555543 32 344 455 3
Q ss_pred CCeEeeC---cHHH-H--HHHHH--hCC--CCeEEeccCcHHHHHhhhccCCccEEEehhh
Q psy11424 55 NAVVGTN---SLRR-K--VLIKS--FFP--SLIIKSLRGNIDTRLNKLDKGEYAAIILAAA 105 (245)
Q Consensus 55 ga~IGTs---S~RR-~--aql~~--~~p--dl~~~~iRGNV~TRL~KL~~g~~DaiiLA~A 105 (245)
|-+||++ |.-. . ..|.. +.| |++++.+ + -...+.-|.+|+.||.++..-
T Consensus 155 Gk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~-~-~~~~~~aL~~G~vDa~~~~eP 213 (417)
T 2g29_A 155 DPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-P-PAQMVANVKVNAMESFCVGEP 213 (417)
T ss_dssp SCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-C-GGGHHHHHHTTSCSEEEEETT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEEC-C-HHHHHHHHHcCCCCEEEeCCC
Confidence 8899875 3221 1 11222 234 6888888 3 367888899999999997643
No 44
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=78.14 E-value=22 Score=30.67 Aligned_cols=127 Identities=11% Similarity=0.091 Sum_probs=76.5
Q ss_pred ccccCCccEEeecCC------------CCCCCCC----------------------CCeeEEEecCCCCCCeEEEEcC-C
Q psy11424 2 AIIKGKADLAVHSLK------------DIPMNLP----------------------SGFILCAILKREDPRDAFISND-Y 46 (245)
Q Consensus 2 aLl~g~iDiAVHSlK------------DlP~~l~----------------------~gL~iaav~~R~dprDvlv~~~-~ 46 (245)
++..|.+|+++-+.- |+|.-.+ .|+.+.+...-. ++. +.+++ -
T Consensus 53 ~v~~G~id~~~~~~~~~~~~~p~~~~~~lPf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~-~~~-~~~~~pI 130 (301)
T 2pfz_A 53 AVQGNQAQIGEILLTNFANEDPVYELDGLPFLATGYDASFKLYQAQKPFLEKKLASQGMMLLYSVAWP-PQG-IFANRDI 130 (301)
T ss_dssp HHHTTSSSEEEEEGGGGTTTCGGGTGGGSTTSCCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECC-CCE-EEESSCC
T ss_pred HHHCCceeeEechhhhccccCchhhhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEecccC-Ccc-eeeCCCC
Confidence 678999999987742 5665332 477777654332 444 44532 3
Q ss_pred CCCCCCCCCCeEeeCcHHHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEehhhhhhhcCCccceeeecCCCCcC
Q psy11424 47 ISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQIL 126 (245)
Q Consensus 47 ~~l~~lp~ga~IGTsS~RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLg~~~~~~~~l~~~~~~ 126 (245)
.+++|| +|.+|.|.+.=-...++.+ ....+++- ...=..-|++|..||..-....+.-+++.+...++..+
T Consensus 131 ~s~~Dl-kG~KiR~~~~~~~~~~~~l--Ga~pv~~~--~~E~y~ALq~G~vDg~~~~~~~~~~~~~~ev~ky~~~~---- 201 (301)
T 2pfz_A 131 KQVSDM-KGLKWRAYSPVTAKIAELV--GAQPVTVQ--QAELAQAMATGVIDSYMSSGSTGFDTKTYEYIKKFYDT---- 201 (301)
T ss_dssp SSGGGG-TTCEEEESSHHHHHHHHHH--TCEEEECC--GGGHHHHHHTTSCSEEEECHHHHHHTTGGGTCCEEECC----
T ss_pred CChHHh-cCCEEecCChhHHHHHHHc--CCcceecC--HHHHHHHHhcCeeeEEecCccccccccHHHHhhhheec----
Confidence 467777 7899988643222344444 46666663 33444456689999999888888877775443332222
Q ss_pred CCCCCceEEEEEec
Q psy11424 127 PAPGQGAIAIEILD 140 (245)
Q Consensus 127 PA~gQGalave~r~ 140 (245)
........+.+.+
T Consensus 202 -~~~~~~~~~~~n~ 214 (301)
T 2pfz_A 202 -EAWLPKNAVLVNK 214 (301)
T ss_dssp -CCCCCEEEEEEEH
T ss_pred -ccccceeEEEEcH
Confidence 1233445566654
No 45
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=77.19 E-value=3.3 Score=34.23 Aligned_cols=103 Identities=12% Similarity=0.139 Sum_probs=59.5
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCC---CCCCCCCCCCeEeeCcHHH-HHHHHHhCC-CC
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY---ISLSTLPKNAVVGTNSLRR-KVLIKSFFP-SL 76 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~---~~l~~lp~ga~IGTsS~RR-~aql~~~~p-dl 76 (245)
+|.+|++|+++-++-..| +..+.+.+.. +- -...-+++.+++ .++++| .|.+||+..--- ...+...++ +.
T Consensus 95 ~l~~G~~D~~~~~~~~~~-~r~~~~~~s~-p~-~~~~~~l~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~l~~~~~~~~ 170 (272)
T 2pvu_A 95 SLQSKEVDMGISGITITD-ERKQSYDFSD-PY-FEATQVILVKQGSPVKNALDL-KGKTIGVQNATTGQEAAEKLFGKGP 170 (272)
T ss_dssp HHHHTSSSEECSSCBCCH-HHHTTEEECS-CC-EEECEEEEEETTCCCCSGGGG-TTSCEEEETTSHHHHHHHHHHCSST
T ss_pred HHhCCCCCEEEeCCcCCH-HHHhcCccch-hh-hccceEEEEECCCCCCCHHHh-CCCeEEEEcCchHHHHHHHhcCCCC
Confidence 577899999985432111 1112333211 11 112235555443 356667 466777632111 233444444 67
Q ss_pred eEEeccCcHHHHHhhhccCCccEEEehhhhhhh
Q psy11424 77 IIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKR 109 (245)
Q Consensus 77 ~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~R 109 (245)
+++.. .|.++-++.|.+|++|+++....-+..
T Consensus 171 ~i~~~-~~~~~~~~~l~~G~vDa~~~~~~~~~~ 202 (272)
T 2pvu_A 171 HIKKF-ETTVVAIMELLNGGVDAVITDNAVANE 202 (272)
T ss_dssp TEEEE-SSHHHHHHHHHTTSCSEEEEEHHHHHH
T ss_pred eEEEc-CCHHHHHHHHHcCCccEEEeCHHHHHH
Confidence 77766 588999999999999999987655443
No 46
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=75.77 E-value=1.1 Score=38.19 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=37.9
Q ss_pred CCCCCCeEee---CcHHHHHHHHHhCCCCe--EEecc-CcHHHHHhhhccCCccEEEehhhhhhh
Q psy11424 51 TLPKNAVVGT---NSLRRKVLIKSFFPSLI--IKSLR-GNIDTRLNKLDKGEYAAIILAAAGLKR 109 (245)
Q Consensus 51 ~lp~ga~IGT---sS~RR~aql~~~~pdl~--~~~iR-GNV~TRL~KL~~g~~DaiiLA~AGL~R 109 (245)
+|..|.+||+ +|. ..++...+|+.. ++... .|.+.-+++|..|++||+|.-..-+..
T Consensus 157 ~l~~~~~vg~v~~~s~--~~~l~~~~~~~~~~i~~~~~~~~~~~l~~l~~G~vDa~i~d~~~~~~ 219 (284)
T 2a5s_A 157 DYSPPFRFGTVPNGST--ERNIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNY 219 (284)
T ss_dssp GSSSCCCEECCTTSHH--HHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHTTSCSEEEEEHHHHHH
T ss_pred HcCCCceEEEEeCCch--HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHcCCeeEEEEchHHHHH
Confidence 3334778884 333 345566666542 22221 689999999999999999987766544
No 47
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=75.44 E-value=3.4 Score=35.00 Aligned_cols=102 Identities=11% Similarity=0.044 Sum_probs=56.6
Q ss_pred ccccCCccEEeecCCCCC--CCCCCCeeEEEecCCCCCCeEEEEcCC---CCCCCCCCCCeEeeC--c-HHHH--HHHHH
Q psy11424 2 AIIKGKADLAVHSLKDIP--MNLPSGFILCAILKREDPRDAFISNDY---ISLSTLPKNAVVGTN--S-LRRK--VLIKS 71 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP--~~l~~gL~iaav~~R~dprDvlv~~~~---~~l~~lp~ga~IGTs--S-~RR~--aql~~ 71 (245)
+|.+|++|+++-+.-..- ......+.+.+.........++|.++. .++++| +|-+||+. | .+.. ..++.
T Consensus 48 ~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~i~s~~dL-~Gk~i~~~~gs~~~~~l~~~l~~ 126 (308)
T 2x26_A 48 ALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILVAENSPIKTVADL-KGHKVAFQKGSSSHNLLLRALRQ 126 (308)
T ss_dssp HHHHTSCSEEEECSHHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTCSCCSGGGG-TTSEEEECTTSHHHHHHHHHHHH
T ss_pred HHHCCCCCEEcccCcHHHHHHhcCCCeEEEEEecCCCCceEEEEeCCCCCCCHHHc-CCCEEeeeCCCcHHHHHHHHHHH
Confidence 688999999986542100 001123444444333333556766543 356777 47788763 2 2221 11222
Q ss_pred h--CC-CCeEEeccCcHHHHHhhhccCCccEEEehhhh
Q psy11424 72 F--FP-SLIIKSLRGNIDTRLNKLDKGEYAAIILAAAG 106 (245)
Q Consensus 72 ~--~p-dl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AG 106 (245)
. -| +++++.+ +...-+..|.+|+.||.++...-
T Consensus 127 ~Gl~~~~v~~~~~--~~~~~~~al~~G~vDa~~~~~~~ 162 (308)
T 2x26_A 127 AGLKFTDIQPTYL--TPADARAAFQQGNVDAWAIWDPY 162 (308)
T ss_dssp TTCCGGGSEEEEC--CHHHHHHHHHTTSSSEEEEETTH
T ss_pred cCCCHHHeEEEec--ChHHHHHHHHcCCCCEEEecchh
Confidence 2 12 3444443 56778899999999999875443
No 48
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=75.42 E-value=31 Score=29.89 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=81.9
Q ss_pred ccccCCccEEe--ec--CCCCCCCCCCCeeEEEecCCCCCCeEEEEcCCCCCCCCCCCCeEee----CcHHHHHHHHHhC
Q psy11424 2 AIIKGKADLAV--HS--LKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGT----NSLRRKVLIKSFF 73 (245)
Q Consensus 2 aLl~g~iDiAV--HS--lKDlP~~l~~gL~iaav~~R~dprDvlv~~~~~~l~~lp~ga~IGT----sS~RR~aql~~~~ 73 (245)
||.+|+||+.. |. |...-.+ .|..+.++-.=.-..-.+.|++.+++++||.|++|+. |..=|.-+|+...
T Consensus 47 AL~~G~iDaN~fQh~pyl~~~~k~--~g~~lv~v~~~~~~p~glYS~k~ksl~dL~~Ga~Iaipnd~tn~~RaL~lL~~a 124 (240)
T 3tqw_A 47 ALADGSVDANMFQHLPYLKAQIEM--RGYKIVSIGKTFVYPMGLYSKKITALTQLKTGAKIAVPSDPSNEARALLLLEKA 124 (240)
T ss_dssp HHHTTSCSEEEEEEHHHHHHHHHH--HCCCEEEEEEEEECCCEEECSSCSSGGGCCTTCEEEEECSHHHHHHHHHHHHHT
T ss_pred HHHcCCcCeeccCCHHHHHHHHHH--CCCCEEEEeeccccceEEecCCCCCHHHhcCCCEEEEecCccHHHHHHHHHHHC
Confidence 78899999974 43 2111001 1222333322111224677889999999999999995 4556777766643
Q ss_pred C----------------------CCeEEeccCcHHHHHhhhccCCccEEEehhhhhhhcCCcc---ceeeecCCCCcCCC
Q psy11424 74 P----------------------SLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQK---RIRMLFSPNQILPA 128 (245)
Q Consensus 74 p----------------------dl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLg~~~---~~~~~l~~~~~~PA 128 (245)
- +++|+++-..--.| -| +++|+.|+---=...-|+.. .+ +++...
T Consensus 125 GLI~Lk~~~~~~~T~~DI~~Npk~l~~~e~~aaql~r--~l--~dvD~avin~n~a~~agl~p~~dal--~~E~~~---- 194 (240)
T 3tqw_A 125 QLIQLKTHVTINATPMDIASNPKKLKIVELDAAQLSR--SL--GDVDLAAINTNYAIPAGLSPSRDAL--LTEGPN---- 194 (240)
T ss_dssp TSCEECCC--CCCCGGGEEECTTCCEEEEECGGGGGG--CT--TTCSEEEECHHHHGGGTCCTTTTCS--EECCSS----
T ss_pred CCEEecCCCCCcCChhhhccCCCCcEEEEcCHHHHHH--hc--cCccEEEEcchHHHHcCCCcccCee--EEcCCC----
Confidence 2 24565554332222 12 57888876432223333321 11 122111
Q ss_pred CCCceEEEEEec---CcHHHHHHhhcCCChhhHHHH
Q psy11424 129 PGQGAIAIEILD---NRKELMEMLIPLNHYFSEQTV 161 (245)
Q Consensus 129 ~gQGalave~r~---~d~~~~~ll~~l~~~~t~~~v 161 (245)
.+=+.-|.+|+ |++++..+.+.++.++...-+
T Consensus 195 -~~y~nviavr~~~~d~~~~k~lv~a~~s~evk~~i 229 (240)
T 3tqw_A 195 -SPYANVVAVREDDKNDPRLKQLVSALHSPAVLSAA 229 (240)
T ss_dssp -SSCEEEEEEEGGGTTCHHHHHHHHHHTSHHHHHHH
T ss_pred -CCeeEEEEEeccccCCHHHHHHHHHHCCHHHHHHH
Confidence 23455666775 568899999999988765443
No 49
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=73.45 E-value=23 Score=30.57 Aligned_cols=127 Identities=9% Similarity=0.104 Sum_probs=75.5
Q ss_pred ccccCCccEEeecCC------------CCCCCCC----------------------CCeeEEEecCCCCCCeEEEEcC-C
Q psy11424 2 AIIKGKADLAVHSLK------------DIPMNLP----------------------SGFILCAILKREDPRDAFISND-Y 46 (245)
Q Consensus 2 aLl~g~iDiAVHSlK------------DlP~~l~----------------------~gL~iaav~~R~dprDvlv~~~-~ 46 (245)
++..|.+|+++-+.- |+|.-.+ .|+.+.+...-. ++. +.+++ -
T Consensus 54 ~v~~G~id~~~~~~~~~~~~~p~~~~~~lPfl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~-~~~-~~~~~pI 131 (301)
T 2pfy_A 54 GVQQGVVQIGEVLVSALGNEDPLFEIDSVPFLASSFNESEKLWKATRPLLAQRLDKQGIVLVYGSPWP-PQG-IYTKKPV 131 (301)
T ss_dssp HHHHTSSSEEEEEGGGGTTTCGGGGGGGSTTTSCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECC-CCE-EEESSCC
T ss_pred HHHCCCeeeehhhhhhhhccCcccccccCCcccCCHHHHHHHHHHhhHHHHHHHHHCCCEEEEeecCC-Ccc-eecCCCC
Confidence 677899999987731 6665432 477777654433 343 44532 3
Q ss_pred CCCCCCCCCCeEeeCcHHHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEehhhhhhhcCCccceeeecCCCCcC
Q psy11424 47 ISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQIL 126 (245)
Q Consensus 47 ~~l~~lp~ga~IGTsS~RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLg~~~~~~~~l~~~~~~ 126 (245)
.+++|| +|.+|.|.+.=-...++.+ ....+++- ...=..-|++|..||..-....+.-+++.+...++...
T Consensus 132 ~s~~Dl-kG~KiR~~~~~~~~~~~~l--Ga~pv~~~--~~E~y~ALq~G~vDg~~~~~~~~~~~~~~ev~k~~~~~---- 202 (301)
T 2pfy_A 132 AALADL-KGTRFRAYSASTSHMAALM--GAVPTTVQ--TPEVPQAFSTGVIDAMLTSPATGVDSQAWDYVKYYYDA---- 202 (301)
T ss_dssp SSGGGG-TTCEEEECSHHHHHHHHHT--TSEEEECC--GGGHHHHHHTTSCSBEEECHHHHHHTTGGGTCCEEEEC----
T ss_pred CCHHHh-CCCEEeecChhHHHHHHHc--CCcceecc--HHHHHHHHhcceeeeEecCccccccccHHHHhhhhccc----
Confidence 467777 7899988642222333443 46667664 33334445689999999888888777775433322222
Q ss_pred CCCCCceEEEEEec
Q psy11424 127 PAPGQGAIAIEILD 140 (245)
Q Consensus 127 PA~gQGalave~r~ 140 (245)
........+.+.+
T Consensus 203 -~~~~~~~~~~~n~ 215 (301)
T 2pfy_A 203 -QAFIPQSFVIANK 215 (301)
T ss_dssp -CCCCCEEEEEEEH
T ss_pred -ccccceeeEEEcH
Confidence 1233445566654
No 50
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=71.66 E-value=1.6 Score=35.91 Aligned_cols=134 Identities=13% Similarity=0.083 Sum_probs=70.2
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcC-----CCCCCCCCCCCeEeeCcHH-HHHHHHHhCCC
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISND-----YISLSTLPKNAVVGTNSLR-RKVLIKSFFPS 75 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~-----~~~l~~lp~ga~IGTsS~R-R~aql~~~~pd 75 (245)
+|.+|++|+++-++-.-|. ..+.+.+.. + =-....+++.++ ..++++| .|.+||+..-- -...+....|+
T Consensus 83 ~l~~g~~D~~~~~~~~t~~-r~~~~~fs~-p-~~~~~~~~~~~~~~~~~i~~~~dL-~g~~v~v~~g~~~~~~l~~~~~~ 158 (259)
T 4dz1_A 83 AVASGQADVAFSGISITDK-RKKVIDFSE-P-YYINSFYLVSMANHKITLNNLNEL-NKYSIGYPRGMAYSDLIKNDLEP 158 (259)
T ss_dssp HHHHTSSSEEEEEEECCHH-HHTTEEECC-C-SEEEEEEEEEETTSCCCCCSGGGG-GGSCEEEETTSTHHHHHHHHTGG
T ss_pred HHhCCCCCEEEECCcCCHH-Hhhcccccc-c-hhhCceEEEEEcCCCCCCCCHHHh-CCCEEEEeCCcHHHHHHHHhccc
Confidence 5778999998765322221 111111110 0 001112233322 2356666 46666653211 12345555665
Q ss_pred ------CeEEeccCcHHHHHhhhccCCccEEEehhhhhhhc----CCccceeeecCCCCcCCCCCCceEEEEEecCcHHH
Q psy11424 76 ------LIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRL----NLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKEL 145 (245)
Q Consensus 76 ------l~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RL----g~~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~ 145 (245)
.+++... |.+.-++.|.+|++||++.-..-+..+ +....+.. . .....-+++-+++++ ++
T Consensus 159 ~g~~~~~~~~~~~-~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~k~~-~l 228 (259)
T 4dz1_A 159 KGYYSLSKVKLYP-TYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRY--V------FKNVDQLGIAFKKGS-PV 228 (259)
T ss_dssp GTSCCGGGCEEES-SHHHHHHHHHHTSCSEEEEEHHHHHHHHHTSCCCEEEEE--E------EEEEEEEEEEEETTC-HH
T ss_pred ccccccceeEecC-CHHHHHHHHHcCCCCEEEecHHHHHHHhccCCCceEeec--c------cCCCceEEEEEeCCh-HH
Confidence 5666554 788999999999999999887655333 22211111 1 011234788889887 44
Q ss_pred HHHh
Q psy11424 146 MEML 149 (245)
Q Consensus 146 ~~ll 149 (245)
.+.+
T Consensus 229 ~~~l 232 (259)
T 4dz1_A 229 RDDF 232 (259)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 51
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=68.56 E-value=3 Score=38.57 Aligned_cols=98 Identities=10% Similarity=0.050 Sum_probs=60.0
Q ss_pred ccccCC----ccEEeecCCCCCCC---------CCCCeeEEEecCCCCCCeEEEEcCC---CC-----------CCCCCC
Q psy11424 2 AIIKGK----ADLAVHSLKDIPMN---------LPSGFILCAILKREDPRDAFISNDY---IS-----------LSTLPK 54 (245)
Q Consensus 2 aLl~g~----iDiAVHSlKDlP~~---------l~~gL~iaav~~R~dprDvlv~~~~---~~-----------l~~lp~ 54 (245)
+|.+|+ +|+++- +-++|.. ....+.+.+...+. . .+++.++. .. +.+|.+
T Consensus 82 al~~G~~~~~~D~a~~-~~~~~~~~~~g~~~~~~g~~~~~v~~~~~~-g-~~i~v~~~~~~s~i~~~~~~lk~~i~dL~k 158 (429)
T 2i49_A 82 NVTIGSQGGGIDGGQW-QMPMPHLITEGIITNGNKVPMYVLAQLITQ-G-NGIAVAPMHEGKGVNLDITKAADYIKGFNK 158 (429)
T ss_dssp HHHHTGGGTSCSEEEE-CTTHHHHHHTTTTTTTCCCCEEEEEECCBC-C-EEEEECGGGTTTTCSSCCGGGHHHHHTHHH
T ss_pred HHHcCCCCCceeEEEe-ccHHHHHHHcCccccCCCCCEEEEEEeccC-C-cEEEEecchhhcccccchHHHHHHHHHHHH
Confidence 677888 999965 3445532 13346666666653 3 55554331 12 355613
Q ss_pred --CC--eEeeC---cH-----HHHHHHHHhCC--CCeEEeccCcHHHHHhhhccCCccEEEehh
Q psy11424 55 --NA--VVGTN---SL-----RRKVLIKSFFP--SLIIKSLRGNIDTRLNKLDKGEYAAIILAA 104 (245)
Q Consensus 55 --ga--~IGTs---S~-----RR~aql~~~~p--dl~~~~iRGNV~TRL~KL~~g~~DaiiLA~ 104 (245)
|- +||++ |. |....-.-+-| |++++.+ +-...+.-|.+|+.||+++..
T Consensus 159 ~~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v~~--~~~~~~~aL~~G~iDa~~~~e 220 (429)
T 2i49_A 159 TNGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLLAV--PPAETVQGMRNGTMDAFSTGD 220 (429)
T ss_dssp HHSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEEEC--CHHHHHHHHHHTCCCEEEEET
T ss_pred hCCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEEEC--ChHHHHHHHHcCCccEEEecc
Confidence 66 89875 32 22111112346 6888888 568888999999999999863
No 52
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=68.05 E-value=8.4 Score=30.62 Aligned_cols=48 Identities=15% Similarity=-0.018 Sum_probs=41.3
Q ss_pred CeEeeCcH-------HHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEeh
Q psy11424 56 AVVGTNSL-------RRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILA 103 (245)
Q Consensus 56 a~IGTsS~-------RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA 103 (245)
-+||++.. ..-.+++..+|++++.-.-++-+.-++.|.+|++|..|..
T Consensus 21 l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~ 75 (241)
T 3oxn_A 21 FTIATTDYAMQTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICR 75 (241)
T ss_dssp EEEEECSHHHHHTHHHHHHHHHHHCTTCEEEEEECCGGGHHHHHHTSCCSEEEEC
T ss_pred EEEEechHHHHHHHHHHHHHHHHHCCCCEEEEEECCcccHHHHHHcCCCCEEEec
Confidence 47888764 5567788899999999999999998999999999999875
No 53
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=66.83 E-value=47 Score=29.44 Aligned_cols=143 Identities=13% Similarity=0.134 Sum_probs=83.3
Q ss_pred ccccCCccEEeecCCCCCCC----CCCCeeEEEecCCCCCCeEEEEcCCCCCCCCCCCCeEeeCc----HHHHHHHHHh-
Q psy11424 2 AIIKGKADLAVHSLKDIPMN----LPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNS----LRRKVLIKSF- 72 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~----l~~gL~iaav~~R~dprDvlv~~~~~~l~~lp~ga~IGTsS----~RR~aql~~~- 72 (245)
||.+|+||+..- -..|.- -..|..|..|-.-....=.+.|++.+++++||.|++|+... .=|.-+|+..
T Consensus 67 AL~~G~IDaN~f--Qh~pyL~~~nk~~g~~Lv~v~~~~~~p~glYS~kiksl~dL~~Ga~IAIPnDptN~~RaL~lL~~a 144 (275)
T 3gxa_A 67 ALAEGELDINVF--QHKPYLDDFKKEHNLDITEVFQVPTAPLGLYPGKLKSLEEVKDGSTVSAPNDPSNFARVLVMLDEL 144 (275)
T ss_dssp HHHHTSCSEEEE--ECHHHHHHHHHHHTCCEEEEEECCBCCCEEEESSCCCGGGCCTTCEEEEECSHHHHHHHHHHHHHT
T ss_pred HHHcCCCCeeec--CCHHHHHHHHHHcCCCEEEEeeccccceEEecCCCCCHHHcCCCCEEEecCCccHHHHHHHHHHHC
Confidence 788999998752 122211 01244444443332333467789999999999999999643 4566666542
Q ss_pred -----CC-----------------CCeEEeccCcHHHHHhhhccCCccEEEeh-----hhhhhhcCCccceeeecCCCCc
Q psy11424 73 -----FP-----------------SLIIKSLRGNIDTRLNKLDKGEYAAIILA-----AAGLKRLNLQKRIRMLFSPNQI 125 (245)
Q Consensus 73 -----~p-----------------dl~~~~iRGNV~TRL~KL~~g~~DaiiLA-----~AGL~RLg~~~~~~~~l~~~~~ 125 (245)
.+ +++|+++-..---| -| +++|+.|+- .|||. . .+.+.+ +++
T Consensus 145 GLIkLk~~~~~~~~T~~DI~eNpk~lk~~eldaaql~r--~l--~dvD~avIn~nya~~agl~-~--~dal~E--~~~-- 213 (275)
T 3gxa_A 145 GWIKLKDGINPLTASKADIAENLKNIKIVELEAAQLPR--SR--ADVDFAVVNGNYAISSGMK-L--TEALFQ--EPS-- 213 (275)
T ss_dssp TSSEECTTCCGGGCCGGGEEECTTCCEEEEECGGGHHH--HT--TTSSEEEECHHHHHHTTCC-G--GGCSEE--CCC--
T ss_pred CCEEecCCCCCCcCCHHHHhcCCCCCEEEEeCHHHHhh--hc--cccCEEEEchhHHHHcCCC-c--ccceec--CCC--
Confidence 11 35666665443333 23 468988763 45555 2 222212 111
Q ss_pred CCCCCCceEEEEEec---CcHHHHHHhhcCCChhhHHHH
Q psy11424 126 LPAPGQGAIAIEILD---NRKELMEMLIPLNHYFSEQTV 161 (245)
Q Consensus 126 ~PA~gQGalave~r~---~d~~~~~ll~~l~~~~t~~~v 161 (245)
.+=+.-|.+|+ |++++..+.+.++.++...-+
T Consensus 214 ----~~y~Nvivvr~~d~d~~~ik~lv~a~~S~evk~~i 248 (275)
T 3gxa_A 214 ----FAYVNWSAVKTADKDSQWLKDVTEAYNSDAFKAYA 248 (275)
T ss_dssp ----CTTCCEEEEEGGGTTCHHHHHHHHHTTSHHHHHHH
T ss_pred ----CCcEEEEEEeccccCCHHHHHHHHHHcCHHHHHHH
Confidence 23334566665 568899999999988865443
No 54
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=66.79 E-value=7.4 Score=34.38 Aligned_cols=108 Identities=15% Similarity=0.041 Sum_probs=60.5
Q ss_pred ccccCCccEEeecCCC-CCCCCCCCeeEEEecC--CCCCC--eEEEEcCC---CCCCCC---CCCCeEee-----CcHHH
Q psy11424 2 AIIKGKADLAVHSLKD-IPMNLPSGFILCAILK--REDPR--DAFISNDY---ISLSTL---PKNAVVGT-----NSLRR 65 (245)
Q Consensus 2 aLl~g~iDiAVHSlKD-lP~~l~~gL~iaav~~--R~dpr--Dvlv~~~~---~~l~~l---p~ga~IGT-----sS~RR 65 (245)
+|.+|++|+++-+..- +...-..+..+.+++. ..+|. -+||.++. +++.+| .+|-+||. +|---
T Consensus 62 aL~~G~vDia~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~ds~i~sl~DL~~~~kgk~va~~~~gsts~~l 141 (321)
T 3p7i_A 62 GMRFNKVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDSPINNLNDLLAKRKDLTFGNGDPNSTSGFL 141 (321)
T ss_dssp HHHTTSCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETTCSCCSHHHHHHTGGGCEEEECCTTCTTTTH
T ss_pred HHHcCCCcEEEEChHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECCCCCCCHHHHHhhcCCCEEEeCCCCccHHHH
Confidence 6789999999854211 1111113555555442 22333 36776654 356666 14567762 22111
Q ss_pred HHH--H-HHh--CCC-CeEEeccCcHHHHHhhhccCCccEEEehhhhhhhc
Q psy11424 66 KVL--I-KSF--FPS-LIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRL 110 (245)
Q Consensus 66 ~aq--l-~~~--~pd-l~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RL 110 (245)
..+ | ... .|+ ++.+ ..|+-+.-+.-|..|++|+.+....-+..+
T Consensus 142 ~~~~~l~~~~Gi~~~~~~~v-~~~~~~~a~~al~~G~vDa~~~~~~~~~~~ 191 (321)
T 3p7i_A 142 VPGYYVFAKNNISASDFKRT-VNAGHETNALAVANKQVDVATNNTENLDKL 191 (321)
T ss_dssp HHHHHTTGGGTCCGGGSSEE-EECCHHHHHHHHHTTSSSEEEEEHHHHHTH
T ss_pred HHHHHHHHHcCCChhHceee-ecCCHHHHHHHHHCCCceEEEechHHHHHH
Confidence 111 2 221 121 4455 578888889999999999999876555444
No 55
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=65.88 E-value=11 Score=29.82 Aligned_cols=48 Identities=10% Similarity=0.005 Sum_probs=40.1
Q ss_pred CeEeeCc-------HHHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEeh
Q psy11424 56 AVVGTNS-------LRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILA 103 (245)
Q Consensus 56 a~IGTsS-------~RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA 103 (245)
-+||++. ++.-..+++.+|++++.-.-++-+.-++.|.+|++|-.|..
T Consensus 32 l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~l~~~~~~~~~~~~~l~~g~~Dl~i~~ 86 (238)
T 2hxr_A 32 LRIAVTPTFTSYFIGPLMADFYARYPSITLQLQEMSQEKIEDMLCRDELDVGIAF 86 (238)
T ss_dssp EEEEECHHHHTTTHHHHHHHHHHHCTTSCEEEEECCHHHHHHHHHTTSCSEEEEE
T ss_pred EEEeechhhHHHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHcCCCcEEEEc
Confidence 4688765 45667888899999999999998888889999999987764
No 56
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=64.20 E-value=26 Score=29.86 Aligned_cols=89 Identities=13% Similarity=0.081 Sum_probs=56.1
Q ss_pred ccccCCccEEeecC--------CCCCCCCCCCeeEEEecCCCCCCeEEEEcCCCCCCCCCCCCeEeeC---cH-HH--HH
Q psy11424 2 AIIKGKADLAVHSL--------KDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTN---SL-RR--KV 67 (245)
Q Consensus 2 aLl~g~iDiAVHSl--------KDlP~~l~~gL~iaav~~R~dprDvlv~~~~~~l~~lp~ga~IGTs---S~-RR--~a 67 (245)
+|.+|++|+++-+. |.. .+.+.++.... .-.+|+++. | +|-+||++ |. -- +.
T Consensus 49 al~~G~~D~~~~~~~~~~~~~~~g~------~~~i~~~~~~g--~~~lv~~~~-----L-kGK~Iav~~~gs~~~~ll~~ 114 (283)
T 3hn0_A 49 LLIKQETDIAVLPMINAANLYNKGI------KIKLAGCPIWG--TLYLVEKTP-----L-KEPALYVFGNGTTPDILTRY 114 (283)
T ss_dssp HHHTTCCSEEEEEHHHHHHHHHTTC------SCEEEEEEECC--CCEEEECSS-----C-CSCCEECSSTTSHHHHHHHH
T ss_pred HHHCCCCCEEEEcHHHHHHHHHCCC------CeEEEEEeccc--EEEEEecCC-----C-CCCEEEecCCCCcHHHHHHH
Confidence 68899999998542 333 35566665433 345676643 4 68888864 21 11 11
Q ss_pred HHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEehh
Q psy11424 68 LIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAA 104 (245)
Q Consensus 68 ql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~ 104 (245)
.|.+.--|++++.+.-+-.....-|.+|+.||.++..
T Consensus 115 ~L~~~Gldv~~~~~~~~~~~~~~al~~G~vDa~~~~e 151 (283)
T 3hn0_A 115 YLGRQRLDYPLNYAFNTAGEITQGILAGKVNRAVLGE 151 (283)
T ss_dssp HHHHHTCCCCEECSCCSHHHHHHHHHHTSCSEEEECT
T ss_pred HHHHcCCceEEEEccCCHHHHHHHHHcCCCCEEEecc
Confidence 2222222778776653567778889999999999854
No 57
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=63.04 E-value=5.8 Score=30.71 Aligned_cols=48 Identities=8% Similarity=0.135 Sum_probs=39.5
Q ss_pred eEeeCc-------HHHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEehh
Q psy11424 57 VVGTNS-------LRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAA 104 (245)
Q Consensus 57 ~IGTsS-------~RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~ 104 (245)
+||+++ .+--.++++.+|++++.-.-|+-+.-++.|.+|++|-.|...
T Consensus 11 ~Ig~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~ 65 (222)
T 4ab5_A 11 RIAVECHTCFDWLMPAMGEFRPMWPQVELDIVSGFQADPVGLLLQHRADLAIVSE 65 (222)
T ss_dssp EEECCCTTTHHHHHHHHHHHHHHSTTEEEEEECCCCSCTHHHHHTTSCSEEEESC
T ss_pred EEEEehHHHHHHHHHHHHHHHHHCCCcEEEEecCCHHHHHHHHHcCCcCEEEecC
Confidence 577663 345677888899999999999988889999999999988753
No 58
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=62.81 E-value=10 Score=29.96 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=39.4
Q ss_pred CeEeeCcH-------HHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEeh
Q psy11424 56 AVVGTNSL-------RRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILA 103 (245)
Q Consensus 56 a~IGTsS~-------RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA 103 (245)
-+||+++. +--.++++.+|++++.-.-++-++-++.|.+|++|-.|..
T Consensus 16 lrIg~~~~~~~~~l~~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~ 70 (228)
T 2fyi_A 16 LTIATTHTQARYSLPEVIKAFRELFPEVRLELIQGTPQEIATLLQNGEADIGIAS 70 (228)
T ss_dssp EEEEECHHHHHHTHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEES
T ss_pred EEEeeccchHHHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCccEEEEe
Confidence 46888753 3346678889999999999999988999999999988764
No 59
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=61.90 E-value=19 Score=31.23 Aligned_cols=110 Identities=14% Similarity=0.096 Sum_probs=61.4
Q ss_pred ccccCCccEEeecCCCCCCCCCCC--eeEEEecCCCCCCeEEEEcCC---CCCCCCCCCCeEeeCcHHHHHHHHHh----
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSG--FILCAILKREDPRDAFISNDY---ISLSTLPKNAVVGTNSLRRKVLIKSF---- 72 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~g--L~iaav~~R~dprDvlv~~~~---~~l~~lp~ga~IGTsS~RR~aql~~~---- 72 (245)
+|.+|++|+++.+.=-+-.....| +.+.+..-..++.-+++.++. +++.+| +|-+||+...==...+..+
T Consensus 54 al~sG~~D~g~~~~~~~~~a~~~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~dL-kGK~ig~~~~~~~~~l~~~L~~~ 132 (342)
T 4esw_A 54 LVGSGKVDMGLKAMVGTLAAKARGFPVTSIGSLLDEPFTGICYLEGSGITSDFQSL-KGKRIGYVGEFGKIQVDELTKHY 132 (342)
T ss_dssp HHHHTSSSEEEEEHHHHHHHHHTTCCEEEEEEEECSCCEEEEEETTSSCCSSGGGG-TTCEEEESSSHHHHHHHHHHGGG
T ss_pred HHHcCCcCEEEecHHHHHHHHHCCCCeEEEEEeccCCcccccccccccccCCHHHh-CCCEEEecCCchHHHHHHHHHHc
Confidence 688999999987542211112223 344444444445545554432 245666 6888887542222333322
Q ss_pred --C-CCCeEEeccCcHHHHHhhhccCCccEEEehh--------hhhhhcCCccc
Q psy11424 73 --F-PSLIIKSLRGNIDTRLNKLDKGEYAAIILAA--------AGLKRLNLQKR 115 (245)
Q Consensus 73 --~-pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~--------AGL~RLg~~~~ 115 (245)
- .+++++++-.+. ..-|.+|+.||.+... .++.+.|....
T Consensus 133 Gl~~~dv~~v~~~~~~---~~al~~G~vDa~~~~~p~~~~~~~~~~~~~g~~~~ 183 (342)
T 4esw_A 133 GMTPDDYVAVRCGMNV---AKYILEGTIDCGIGIECIQQVELEEALKEQGKDSN 183 (342)
T ss_dssp TCCGGGSEEEECGGGH---HHHHHHTSSSEEEEETTTHHHHHHHHHHHTTCCGG
T ss_pred CCChhheEEecCCHHH---HHHHHcCCCCEEEEeccchHHHHHHHHHhhCcccc
Confidence 1 356777765443 4557799999998643 35666665443
No 60
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=61.50 E-value=15 Score=29.84 Aligned_cols=49 Identities=8% Similarity=0.018 Sum_probs=39.1
Q ss_pred CeEeeCcH------HHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEehh
Q psy11424 56 AVVGTNSL------RRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAA 104 (245)
Q Consensus 56 a~IGTsS~------RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~ 104 (245)
-+||+++. .-..++.+.+|++++....++-+.-+++|.+|++|-.|...
T Consensus 30 l~Ig~~~~~~~~l~~~l~~f~~~~P~i~v~i~~~~~~~~~~~l~~g~~Di~i~~~ 84 (290)
T 1twy_A 30 ITISGSTSVARIMDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAMTSR 84 (290)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHTTSCSEEEESS
T ss_pred EEEecCcchHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHHhcCCCcEEEecC
Confidence 47888753 22355667799999999999999999999999999888653
No 61
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=60.35 E-value=72 Score=27.72 Aligned_cols=151 Identities=13% Similarity=0.089 Sum_probs=84.3
Q ss_pred ccccCCccEEe--ecC--CCCCCCCCCCeeEEEecCCCCCCeEEEEcCCCCCCCCCCCCeEeeC----cHHHHHHHHHhC
Q psy11424 2 AIIKGKADLAV--HSL--KDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTN----SLRRKVLIKSFF 73 (245)
Q Consensus 2 aLl~g~iDiAV--HSl--KDlP~~l~~gL~iaav~~R~dprDvlv~~~~~~l~~lp~ga~IGTs----S~RR~aql~~~~ 73 (245)
||-+|++|+-. |-- ..-= .-..|..+.++.+-.-.-=-+-|++++++++||.|++|+-. -.=|.-.|+..-
T Consensus 49 AL~~G~iDaN~fQH~pyL~~~~-k~~~g~~lv~v~~~~~~P~glYS~k~ksl~dl~~Ga~IaIPnDptN~~RaL~lL~~a 127 (249)
T 4got_A 49 ALADKEVDANYFQHIPYLEQEM-KENTDYKLVNAGAVHLEPFGIYSKTYKSLKDLPDGATIILTNNVAEQGRMLAMLENA 127 (249)
T ss_dssp HHHTTSCSEEEEEEHHHHHHHH-HHCTTCCEEEEEEEEECCCEEECSSCSSGGGCCTTCEEEEECCGGGHHHHHHHHHHT
T ss_pred HHHcCCcceeeccCHHHHHHHH-HhCCCCceEEeeeeeeccccccccCcCchhhcCCCCEEEEecCccchHHHHHHHHHC
Confidence 68889999886 421 1000 01124444444433333345567889999999999999853 455676666643
Q ss_pred ------C-----------------CCeEEeccCcHHHHHhhhccCCccEEEehhhhhhhcCCcc-ceeeecCCCCcCCCC
Q psy11424 74 ------P-----------------SLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQK-RIRMLFSPNQILPAP 129 (245)
Q Consensus 74 ------p-----------------dl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLg~~~-~~~~~l~~~~~~PA~ 129 (245)
+ +++|+.+-..-- -+-|.+.++|+.|+---=...-|+.. .-.-.++.. ..
T Consensus 128 GLIkLk~~~~~~~~t~~DI~~Npk~l~~~e~~aaql--~r~l~d~~vD~avin~n~a~~agl~p~~dal~~E~~----~~ 201 (249)
T 4got_A 128 GLITLDSKVETVDATLKDIKKNPKNLEFKKVAPELT--AKAYENKEGDAVFINVNYAIQNKLNPKKDAIEVEST----KN 201 (249)
T ss_dssp TSCEECTTSCGGGCCGGGEEECTTCCEEEEECTTTH--HHHHHTTCSSEEEECHHHHHHTTCCHHHHCSEECCS----TT
T ss_pred CCEEECCCCCccccCcchhhhCCccccceecCHhHh--hhhcccccccEEEechhHHHHcCCChhhhhhcccCC----CC
Confidence 2 255665543322 23356678898887433333333321 100011110 01
Q ss_pred CCceEEEEEec---CcHHHHHHhhcCCChhhHH
Q psy11424 130 GQGAIAIEILD---NRKELMEMLIPLNHYFSEQ 159 (245)
Q Consensus 130 gQGalave~r~---~d~~~~~ll~~l~~~~t~~ 159 (245)
-+=+.-|.+|+ |++++..+.+.++.++...
T Consensus 202 ~py~Nvivvr~~d~d~~~ik~lv~a~~s~evk~ 234 (249)
T 4got_A 202 NPYANIIAVRKGEEDSAKIKALMEVLHSKKIKD 234 (249)
T ss_dssp CCCCEEEEEETTCTTSHHHHHHHHHHTSHHHHH
T ss_pred CceEEEEEEcccccCCHHHHHHHHHHCCHHHHH
Confidence 12345677775 5678999999998887654
No 62
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=60.22 E-value=17 Score=30.52 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=39.9
Q ss_pred CeEeeCc-------HHHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEeh
Q psy11424 56 AVVGTNS-------LRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILA 103 (245)
Q Consensus 56 a~IGTsS-------~RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA 103 (245)
-+||++. +..-.++...+|++++.-.-++-+.-+..|.+|++|..|..
T Consensus 92 l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~i~l~~~~~~~~~~~l~~g~~Dlai~~ 146 (312)
T 2h9b_A 92 IRIGFVGSLLFGLLPRIIHLYRQAHPNLRIELYEMGTKAQTEALKEGRIDAGFGR 146 (312)
T ss_dssp EEEEECGGGGGTTHHHHHHHHHHTCTTCEEEEEECCHHHHHHHHHTTSCSEEEES
T ss_pred EEEEechhhhHhhHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEe
Confidence 4688764 34457778889999999999999999999999999988864
No 63
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=56.08 E-value=15 Score=28.19 Aligned_cols=41 Identities=12% Similarity=0.129 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEeh
Q psy11424 63 LRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILA 103 (245)
Q Consensus 63 ~RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA 103 (245)
++.-.++++.+|++++.-.-++-+.-+..|.+|++|..|..
T Consensus 21 ~~~l~~f~~~~P~i~i~l~~~~~~~l~~~l~~g~~Dl~i~~ 61 (209)
T 2ql3_A 21 PSMLYAFTAEYPRASVEFREDTQNRLRTQLEGGELDVAIVY 61 (209)
T ss_dssp HHHHHHHHHHCTTEEEEEEECCHHHHHHHHHTTSCSEEEEE
T ss_pred HHHHHHHHHHCCCceEEEEECcHHHHHHHHHcCCccEEEEe
Confidence 35567888999999999999998888899999999987754
No 64
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=54.37 E-value=11 Score=29.47 Aligned_cols=47 Identities=26% Similarity=0.357 Sum_probs=37.6
Q ss_pred eEeeCcH-------HHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEeh
Q psy11424 57 VVGTNSL-------RRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILA 103 (245)
Q Consensus 57 ~IGTsS~-------RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA 103 (245)
+||+++. .--.++++.+|++++.-.-++-+.-++.|.+|++|..|..
T Consensus 8 rIg~~~~~~~~~l~~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~ 61 (219)
T 1i6a_A 8 HIGLIPTVGPYLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDAVILA 61 (219)
T ss_dssp EEEECTTTHHHHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEEE
T ss_pred EEEeccchhhhhhhHHHHHHHHHCCCeEEEEEECChHHHHHHHHcCCeeEEEec
Confidence 5776532 2245677889999999999999999999999999987764
No 65
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=52.11 E-value=16 Score=28.40 Aligned_cols=49 Identities=20% Similarity=0.116 Sum_probs=40.4
Q ss_pred CeEeeCcH-------HHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEehh
Q psy11424 56 AVVGTNSL-------RRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAA 104 (245)
Q Consensus 56 a~IGTsS~-------RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~ 104 (245)
-+||+++. .--.++++.+|++++.-.-++-+.-++.|.+|++|..|...
T Consensus 13 l~Ig~~~~~~~~~l~~~l~~~~~~~P~v~i~~~~~~~~~~~~~l~~g~~Dl~i~~~ 68 (232)
T 3ho7_A 13 LNIAVLPTIAPYLLPRVFPIWKKELAGLEIHVSEMQTSRCLASLLSGEIDMAIIAS 68 (232)
T ss_dssp EEEEECTTTHHHHHHHHHHHHHHHSTTEEEEEEECCHHHHHHHHHHTSCSEEEESS
T ss_pred EEEEeccccchhhhHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEcC
Confidence 36776653 34567788899999999999999999999999999988764
No 66
>2amh_A Septum formation protein MAF homologue, putative; domain alpha-beta motif, structural genomics, PSI, protein structure initiative; 2.00A {Trypanosoma brucei} SCOP: c.51.4.2
Probab=50.45 E-value=7.3 Score=33.14 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=27.4
Q ss_pred eEeeCcHHHHHHHHHhCC--CCeEEeccCcHHHHH
Q psy11424 57 VVGTNSLRRKVLIKSFFP--SLIIKSLRGNIDTRL 89 (245)
Q Consensus 57 ~IGTsS~RR~aql~~~~p--dl~~~~iRGNV~TRL 89 (245)
+.+++|+||+..|..+.| .+.|..+.=+||...
T Consensus 13 ILAS~SPrR~eLL~~~~~~~gi~f~v~~~~iDE~~ 47 (207)
T 2amh_A 13 IIGTSSAFRANVLREHFGDRFRNFVLLPPDIDEKA 47 (207)
T ss_dssp EECCCCHHHHHHHHHHHTTTCSEEEECCCCCCGGG
T ss_pred EEccCCHHHHHHHHhhhhcCCCCEEEECCCCCCCC
Confidence 789999999999999866 577777777888753
No 67
>3k2d_A ABC-type metal ION transport system, periplasmic; alpha/beta domain, immune system; 2.60A {Vibrio vulnificus}
Probab=49.07 E-value=17 Score=31.65 Aligned_cols=145 Identities=14% Similarity=0.106 Sum_probs=81.7
Q ss_pred ccccCCccEEee--c--CCCCCCCCCCCeeEEEecCCCCCCeEEEEcCCCCCCCCCCCCeEeeCc----HHHHHHHHHhC
Q psy11424 2 AIIKGKADLAVH--S--LKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNS----LRRKVLIKSFF 73 (245)
Q Consensus 2 aLl~g~iDiAVH--S--lKDlP~~l~~gL~iaav~~R~dprDvlv~~~~~~l~~lp~ga~IGTsS----~RR~aql~~~~ 73 (245)
||-+|+||+..- . |...-. ..|..+.++-.=.-..=.+.|++.+++++||.|++|+.+. .=|.-+|+..-
T Consensus 50 AL~~G~IDaN~fQh~pyL~~~nk--~~g~~lv~v~~~~~~p~glYS~k~ksl~dL~~Ga~IaipnD~tN~~RaL~lL~~a 127 (237)
T 3k2d_A 50 ALDDGSIDMNAFQHKPYLDRQVE--DRDYKLTIAGNTFVYPIAGYSKQVKSVAALADGVRIAVPNDPTNLGRSLLLLEQQ 127 (237)
T ss_dssp HHHHTSCSEEEEEEHHHHHHHHH--HHCCCEEEEEECCCCCCEEECSSCSCSTTCCTTCEEEEECSHHHHHHHHHHHHHT
T ss_pred HHHcCCCCeeccCCHHHHHHHHH--HCCCCEEEEeeecccceEEecCCCCCHHHhcCCCEEEecCCccHHHHHHHHHHHC
Confidence 788899998753 2 110000 1133344433322223467788999999999999999654 45666665432
Q ss_pred ------C----------------CCeEEeccCcHHHHHhhhccCCccEEEeh-----hhhhhhcCCccceeeecCCCCcC
Q psy11424 74 ------P----------------SLIIKSLRGNIDTRLNKLDKGEYAAIILA-----AAGLKRLNLQKRIRMLFSPNQIL 126 (245)
Q Consensus 74 ------p----------------dl~~~~iRGNV~TRL~KL~~g~~DaiiLA-----~AGL~RLg~~~~~~~~l~~~~~~ 126 (245)
+ +++|+++-.----| -| +++|+.|+- .|||.-. .+.+ +++...
T Consensus 128 GLIkLk~~~~~~~t~~DI~~Npk~lk~~e~~aaql~r--~l--~dvD~avin~nya~~agl~p~--~dal--~~E~~~-- 197 (237)
T 3k2d_A 128 GLIKLRPEVGLLATVRDIVENPKNITIMELDAAQLPR--SL--DDVALSIINTTYASSINLTPE--KDGV--FVEDKE-- 197 (237)
T ss_dssp TSCEECTTCCSSCCGGGEEECTTCCEEEEECGGGHHH--HT--TTSSEEEECHHHHGGGTCCHH--HHCS--EECCSS--
T ss_pred CCEEecCCCCCCCCHHHHhCCCCCCEEEEcCHHHHhh--hc--cCccEEEecccHHHHcCCCcc--ccee--EEcCCC--
Confidence 1 35666655433223 12 468888763 4554321 0111 112111
Q ss_pred CCCCCceEEEEEec---CcHHHHHHhhcCCChhhHHHH
Q psy11424 127 PAPGQGAIAIEILD---NRKELMEMLIPLNHYFSEQTV 161 (245)
Q Consensus 127 PA~gQGalave~r~---~d~~~~~ll~~l~~~~t~~~v 161 (245)
.+=+.-|.+|+ |++++..+.+.++.++...-+
T Consensus 198 ---~~y~nviavr~~~~d~~~~k~lv~~~~s~~vk~~i 232 (237)
T 3k2d_A 198 ---SPYVNLIVARQDNVQNENVQNFVKAYQTEEVYTAA 232 (237)
T ss_dssp ---SSCCEEEEEETTTTTSHHHHHHHHHHTSHHHHHHH
T ss_pred ---CCcEEEEEEeccccCCHHHHHHHHHHCCHHHHHHH
Confidence 23355667775 568899999999988876543
No 68
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=49.00 E-value=57 Score=25.90 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=38.9
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHHHHhc-------------cCCCcceeeEEEEeccCCCeEEEEEE
Q psy11424 143 KELMEMLIPLNHYFSEQTVKAERAVSRNFN-------------GSCKISLAAFAMVNNFNESEINLRAI 198 (245)
Q Consensus 143 ~~~~~ll~~l~~~~t~~~v~aER~~l~~L~-------------ggC~~Piga~a~~~~~~~~~l~l~~~ 198 (245)
.++.+-|+.+.|++.+.....|-+ +.|- -||+++|-.+++.. +++++++.|-
T Consensus 11 ~~ii~~F~~~~~we~Ry~~LI~lg--k~Lp~lpe~~k~~~~~V~GCqS~VWl~~~~~--~~g~l~f~ad 75 (141)
T 3g0m_A 11 EKLLRNFTRCANWEEKYLYIIELG--QRLAELNPQDRNPQNTIHGCQSQVWIVMRRN--ANGIIELQGD 75 (141)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHH--HTSCCCCGGGCSGGGBCCSSSSCEEEEEEEC--TTSBEEEEEE
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH--ccCCCCCHHHcCccCcCCCCccCeeEEEEEc--CCCEEEEEec
Confidence 468888999999888887776643 2222 79999999999872 4567887764
No 69
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=48.90 E-value=8.6 Score=33.54 Aligned_cols=108 Identities=16% Similarity=0.061 Sum_probs=60.1
Q ss_pred ccccCCccEEeecCCCCCC-CCCCCeeEEEecC--CCCCC--eEEEEcCCC---CCCCC---CCCCeEee-----CcHHH
Q psy11424 2 AIIKGKADLAVHSLKDIPM-NLPSGFILCAILK--REDPR--DAFISNDYI---SLSTL---PKNAVVGT-----NSLRR 65 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~-~l~~gL~iaav~~--R~dpr--Dvlv~~~~~---~l~~l---p~ga~IGT-----sS~RR 65 (245)
+|.+|++|+++-+....-. .-..+..+.+.+. -.+|. -+||.++.. ++.+| .+|-+||. +|-.=
T Consensus 52 al~~G~vDi~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~ds~i~sl~DL~~~~kgk~ia~~~~gs~~~~l 131 (310)
T 3n5l_A 52 GMRFDKVDIAWYGNKAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKDSKIDSLEDMLANAKSLTFGNGDPNSTSGYL 131 (310)
T ss_dssp HHHTTSCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETTCSCCSHHHHHHTGGGCEEEECCTTCTTTTH
T ss_pred HHHcCCCCEEEECcHHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECCCCCCCHHHHhhhcCCCEEEecCCCccHhHH
Confidence 6789999999865211100 0012455444432 22332 367766543 56666 14667763 12111
Q ss_pred HHH--H-HHhCCC----CeEEeccCcHHHHHhhhccCCccEEEehhhhhhhc
Q psy11424 66 KVL--I-KSFFPS----LIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRL 110 (245)
Q Consensus 66 ~aq--l-~~~~pd----l~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RL 110 (245)
... | ...--+ ++.+ ..|+-+.-+.-|..|++|+.+....-+..+
T Consensus 132 ~~~~~l~~~~Gi~~~~~~~~v-~~g~~~~~~~al~~G~vDa~~~~~~~~~~~ 182 (310)
T 3n5l_A 132 VPGYYVFAKNNVDPVKAFKRT-LNSSHEVNALAVANKQVDVATFNTEGMERL 182 (310)
T ss_dssp HHHHHTTTTTTCCHHHHSSEE-EECCHHHHHHHHHTTSSSEEEEEHHHHHHH
T ss_pred HHHHHHHHHcCCChHHhcccc-ccCCHHHHHHHHHcCCccEEEecchhHHHH
Confidence 111 1 111111 4455 579998889999999999999876655543
No 70
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=46.74 E-value=14 Score=29.18 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=38.1
Q ss_pred CeEeeCcH-------HHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEeh
Q psy11424 56 AVVGTNSL-------RRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILA 103 (245)
Q Consensus 56 a~IGTsS~-------RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA 103 (245)
-+||+++. +=-.++++.+|++++.-..+|-+.-++.|.+|++|-.|..
T Consensus 10 l~Ig~~~~~~~~~lp~~l~~f~~~~P~v~l~l~~~~~~~l~~~L~~g~iDl~i~~ 64 (218)
T 2y7p_A 10 FNLAMTDIGEMYFMPPLMEALAQRAPHIQISTLRPNAGNLKEDMESGAVDLALGL 64 (218)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHHCTTCEEEEECCCTTTHHHHHHHTSSCEEEEC
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHCCCCEEEEEeCCcccHHHHHhCCCceEEEec
Confidence 36887643 2245667789999999999998888999999999987753
No 71
>1ex2_A Protein MAF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SUC PO4; 1.85A {Bacillus subtilis} SCOP: c.51.4.2 PDB: 1exc_A*
Probab=46.20 E-value=11 Score=31.59 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=23.8
Q ss_pred CeEeeCcHHHHHHHHHhCCCCeEEeccCcHHHH
Q psy11424 56 AVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTR 88 (245)
Q Consensus 56 a~IGTsS~RR~aql~~~~pdl~~~~iRGNV~TR 88 (245)
-+.+++|+||+..|..+.-++++. .=+||..
T Consensus 5 lILAS~SPrR~eLL~~~gi~f~v~--~~~iDE~ 35 (189)
T 1ex2_A 5 LILASQSPRRKELLDLLQLPYSII--VSEVEEK 35 (189)
T ss_dssp EEECCCCHHHHHHHHTTCCCCEEC--CCCCCCC
T ss_pred EEEECCCHHHHHHHHhCCCCeEEE--CCCCCCC
Confidence 578999999999999887666655 3466653
No 72
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=45.83 E-value=26 Score=27.73 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=41.3
Q ss_pred CeEeeCcH-------HHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEehh
Q psy11424 56 AVVGTNSL-------RRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAA 104 (245)
Q Consensus 56 a~IGTsS~-------RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~ 104 (245)
-+||+++. +.-.++++.+|++++.-.-++-..=+..|.+|++|-.|...
T Consensus 29 l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~i~~~~~~~~~~~L~~g~~Dl~i~~~ 84 (238)
T 3onm_A 29 LIIGASDDTADTLLPFLLNRVATLYPRLAIDVRVKRSPFIADMLSSGEVDLAITTA 84 (238)
T ss_dssp EEEEECHHHHTTHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHHTSCSEEEECS
T ss_pred EEEeccchhhHHHHHHHHHHHHHHCCCcEEEEEECCHHHHHHHHHCCCccEEEEec
Confidence 36887654 45677888999999999999999989999999999988754
No 73
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=44.28 E-value=27 Score=29.51 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=40.1
Q ss_pred CeEeeCc-------HHHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEeh
Q psy11424 56 AVVGTNS-------LRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILA 103 (245)
Q Consensus 56 a~IGTsS-------~RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA 103 (245)
-+||+++ +..-.++...+|++++.-.-++-+..+..|.+|++|..|..
T Consensus 92 l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~g~~Dlai~~ 146 (313)
T 2h98_A 92 LRIGYVSSLLYGLLPEIIYLFRQQNPEIHIELIECGTKDQINALKQGKIDLGFGR 146 (313)
T ss_dssp EEEEECGGGGGTTHHHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHTSCSEEEES
T ss_pred EEEEechHhHHhHHHHHHHHHHHHCCCeEEEEEeCChHHHHHHHHcCCCCEEEEe
Confidence 4688764 34567788889999999999999999999999999988764
No 74
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=43.42 E-value=20 Score=31.31 Aligned_cols=143 Identities=13% Similarity=0.135 Sum_probs=81.5
Q ss_pred ccccCCccEEeecCCCCCCC----CCCCeeEEEecCCCCCCeEEEEcCCCCCCCCCCCCeEeeC----cHHHHHHHHHhC
Q psy11424 2 AIIKGKADLAVHSLKDIPMN----LPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTN----SLRRKVLIKSFF 73 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~----l~~gL~iaav~~R~dprDvlv~~~~~~l~~lp~ga~IGTs----S~RR~aql~~~~ 73 (245)
||.+|+||+-..-- .|.- -..|..+.++-+-.-..=.+-|++++++++||.|++|+.. ..=|.-.|+..-
T Consensus 45 AL~~G~iDaN~fQh--~pyL~~~nk~~g~~Lv~v~~~~~~p~glYS~k~ksl~dl~~Ga~IaIPnDptN~~RaL~lL~~a 122 (245)
T 3ir1_A 45 ALAEGELDINVFQH--KPYLDDFKKEHNLDITEVFQVPTAPLGLYPGKLKSLEEVKDGSTVSAPNDPSNFARVLVMLDEL 122 (245)
T ss_dssp HHHHTSCSEEEEEC--HHHHHHHHHHHTCCEEEEEECCBCCCEEEESSCCCGGGCCTTCEEEEECSHHHHHHHHHHHHHT
T ss_pred HHHCCCcCeeccCC--HHHHHHHHHHcCCCEEEEeeecccceEEecCCCCCHHHcCCCCEEEecCCccHHHHHHHHHHHC
Confidence 67888888874321 1110 0124455555443333346678999999999999999954 445666665432
Q ss_pred C-----------------------CCeEEeccCcHHHHHhhhccCCccEEEeh-----hhhhhhcCCccceeeecCCCCc
Q psy11424 74 P-----------------------SLIIKSLRGNIDTRLNKLDKGEYAAIILA-----AAGLKRLNLQKRIRMLFSPNQI 125 (245)
Q Consensus 74 p-----------------------dl~~~~iRGNV~TRL~KL~~g~~DaiiLA-----~AGL~RLg~~~~~~~~l~~~~~ 125 (245)
- +++|+.+-..---| -| +++|+.|.- .|||. . .+.+.+ +.
T Consensus 123 GLIkLk~~~~~~~~T~~DI~~Npk~lk~~e~daaql~r--~l--~dvD~avin~nya~~agl~-~--~dal~E--~~--- 190 (245)
T 3ir1_A 123 GWIKLKDGINPLTASKADIAENLKNIKIVELEAAQLPR--SR--ADVDFAVVNGNYAISSGMK-L--TEALFQ--EP--- 190 (245)
T ss_dssp TSSEECTTCCGGGCCGGGEEECTTCCEEEEECGGGSGG--GG--GTSSEEEECHHHHHHTTCC-G--GGCSEE--CC---
T ss_pred CCEEecCCCCCCcCCHHHHhcCCCCCEEEEeCHHHHhh--hc--cccCEEEEchhHHHHcCCC-c--ccceec--CC---
Confidence 1 23555543322111 22 368887753 45555 2 222211 11
Q ss_pred CCCCCCceEEEEEec---CcHHHHHHhhcCCChhhHHHH
Q psy11424 126 LPAPGQGAIAIEILD---NRKELMEMLIPLNHYFSEQTV 161 (245)
Q Consensus 126 ~PA~gQGalave~r~---~d~~~~~ll~~l~~~~t~~~v 161 (245)
..+=+.-|.+|+ |++++..+.+.++.++...-+
T Consensus 191 ---~~~y~Nvivvr~~~~d~~~ik~lv~a~~S~evk~~i 226 (245)
T 3ir1_A 191 ---SFAYVNWSAVKTADKDSQWLKDVTEAYNSDAFKAYA 226 (245)
T ss_dssp ---CCTTCCEEEEEGGGTTCHHHHHHHHHTTSHHHHHHH
T ss_pred ---CCCcEEEEEEeccccCCHHHHHHHHHHCCHHHHHHH
Confidence 123344566675 568899999999988865443
No 75
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=43.37 E-value=1.1e+02 Score=26.89 Aligned_cols=104 Identities=12% Similarity=0.048 Sum_probs=61.6
Q ss_pred ccccCCccEEeecCC-------------CCCCCCC------------------------CCeeEEEecCCCCCCeEEEEc
Q psy11424 2 AIIKGKADLAVHSLK-------------DIPMNLP------------------------SGFILCAILKREDPRDAFISN 44 (245)
Q Consensus 2 aLl~g~iDiAVHSlK-------------DlP~~l~------------------------~gL~iaav~~R~dprDvlv~~ 44 (245)
+|..|.+|+++-+.- ++|.-.+ .|+.+.+ ..- -++..+.++
T Consensus 86 ~v~~G~id~~~~~~~~~~~~~p~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~-~~~-g~~~~~~~~ 163 (361)
T 2zzv_A 86 AVKTGVLDGMNPFTLYWAGRMPVTAFLSSYALGLDRPDQWETWFYSLGGLDIARRAFAEQGLFYVG-PVQ-HDLNIIHSK 163 (361)
T ss_dssp HHHHTSSSEEECBGGGGTTTCGGGGGSSCCTTSCCSHHHHHHHHHTSSHHHHHHHHHHHTTEEEEE-EEC-CCCCCEEES
T ss_pred HHHcCceeEEEeccccccccCcHHHHHhcCCCCcCCHHHHHHHHHcCchHHHHHHHHHHCCcEEec-ccC-CccccceeC
Confidence 678899999987642 3664331 2555554 322 234444443
Q ss_pred -CCCCCCCCCCCCeEeeCcHHHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEehhhhh-hhcCC
Q psy11424 45 -DYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGL-KRLNL 112 (245)
Q Consensus 45 -~~~~l~~lp~ga~IGTsS~RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL-~RLg~ 112 (245)
.-.+++|| +|-+|.|.+.=-...++.+ ....+++ ....=..-|.+|.+||.......+ .-.++
T Consensus 164 ~pI~s~~DL-kG~kirv~~~~~~~~~~~l--Ga~pv~~--~~~e~~~ALq~G~VDg~~~~~~~~~~~~~~ 228 (361)
T 2zzv_A 164 KPIRRFEDF-KGVKLRVPGGMIAEVFAAA--GASTVLL--PGGEVYPALERGVIDAADFVGPAVNYNLGF 228 (361)
T ss_dssp SCCCSGGGG-TTCEEECCSHHHHHHHHHT--TCEEECC--CGGGHHHHHHTTSCSEEECSCHHHHHHTTH
T ss_pred CCcCChHHh-CCCEEeecCHHHHHHHHHc--CCeeeec--ChHHHHHHHHcCCcceeecCCcchhhhcCh
Confidence 23467777 7889998872112233333 4666666 444556677899999998665555 44444
No 76
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=42.71 E-value=28 Score=26.50 Aligned_cols=48 Identities=21% Similarity=0.226 Sum_probs=38.8
Q ss_pred eEeeCcH-------HHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEehh
Q psy11424 57 VVGTNSL-------RRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAA 104 (245)
Q Consensus 57 ~IGTsS~-------RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~ 104 (245)
+||+++. .--.++.+.+|++++.-.-++-+.-++.|.+|++|-.|...
T Consensus 7 ~Ig~~~~~~~~~l~~~l~~~~~~~P~i~i~i~~~~~~~~~~~l~~g~~Dl~i~~~ 61 (219)
T 3jv9_A 7 KLGLIFTVAPYLLPKLIVSLRRTAPKMPLMLEENYTHTLTESLKRGDVDAIIVAE 61 (219)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHSTTCCEEEEEECHHHHHHHHHHTSSSEEEEES
T ss_pred EEEEcchhhHHHHHHHHHHHHHHCCCcEEEEEeCCcHHHHHHHHcCCCCEEEEcC
Confidence 5666543 33567788899999999999999989999999999888754
No 77
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=42.66 E-value=49 Score=28.87 Aligned_cols=98 Identities=7% Similarity=0.037 Sum_probs=54.8
Q ss_pred ccccCCccEEeecC--------CCCCCC---CCCCeeEEEecCCCCCCeEEEEcC---CCCCCCCCCCCeEeeC---c-H
Q psy11424 2 AIIKGKADLAVHSL--------KDIPMN---LPSGFILCAILKREDPRDAFISND---YISLSTLPKNAVVGTN---S-L 63 (245)
Q Consensus 2 aLl~g~iDiAVHSl--------KDlP~~---l~~gL~iaav~~R~dprDvlv~~~---~~~l~~lp~ga~IGTs---S-~ 63 (245)
+|.+|++|+++-+. +..|.. ..+.+...+..-. +|. +||.++ .+++.||. |-+|+.+ | .
T Consensus 82 ~l~~g~~D~~~~~~~~~~~a~~g~~~f~~~~~~~d~~~v~~~~~-~~~-~lvv~~ds~i~sl~DL~-gk~v~~~~~Gs~~ 158 (327)
T 4ddd_A 82 SIRYSNMDISIVQSDLEYYAYNGLGFYEKMLPMDNLRMLASLHK-EYL-TIVVKKSSNISVIDDIK-GKRVNIGSPGTGV 158 (327)
T ss_dssp HHHTTSCSEEEEEHHHHHHHHHTCGGGTTSCCCTTEEEEEEEEE-EEE-EEEEETTSSCCSGGGGT-TSEEECCSTTSHH
T ss_pred HHHcCCCcEEEECcHHHHHHHhCcCcccccCCCcchhehhccCC-ccE-EEEEECCCCCCCHHHhC-CCEEecCCCCccH
Confidence 57789999997543 222221 2245665544332 333 444443 35678884 5576653 2 2
Q ss_pred HHHH-HHHH-h--CC-CCeEEeccCcHHHHHhhhccCCccEEEeh
Q psy11424 64 RRKV-LIKS-F--FP-SLIIKSLRGNIDTRLNKLDKGEYAAIILA 103 (245)
Q Consensus 64 RR~a-ql~~-~--~p-dl~~~~iRGNV~TRL~KL~~g~~DaiiLA 103 (245)
+... +++. . .+ ++..++..|+ ..-+.-|.+|++|+++..
T Consensus 159 ~~~~~~~l~~~Gi~~~~v~~v~~~g~-~~a~~aL~~G~vDa~~~~ 202 (327)
T 4ddd_A 159 RVAMLKLLGEKGWTKKDFSVMAELKS-SEQAQALCDNKIDVMVDV 202 (327)
T ss_dssp HHHHHHHHHHHTCCGGGCSEEECCCH-HHHHHHHHTTSCSBEEEE
T ss_pred HHHHHHHHHHcCCChHhcchhhcCCH-HHHHHHHHcCCCCEEEEc
Confidence 3222 2222 1 22 3445666665 556888999999999873
No 78
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=40.65 E-value=15 Score=31.06 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=55.8
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEEEecCCCCCCeEEEEcCC----CCCCCCC-----CCCeEeeCcHHH-HHHHHH
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY----ISLSTLP-----KNAVVGTNSLRR-KVLIKS 71 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~iaav~~R~dprDvlv~~~~----~~l~~lp-----~ga~IGTsS~RR-~aql~~ 71 (245)
+|.+|++|+++-++---|. ..+.+.+.. +-- ...-+++.++. .++++|. .|.+|||..--- ...++.
T Consensus 111 ~l~~g~~D~~~~~~~~t~e-R~~~~~fs~-P~~-~~~~~i~~~~~~~~i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~ 187 (294)
T 2rc8_A 111 DLLSGTANMAVTSFSINTA-RSQVIDFTS-PFF-STSLGILVRTRGTELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQ 187 (294)
T ss_dssp HHHHTSCSEECSSCBCCHH-HHTTSEECS-CSE-EEEEEEEEETTSCCCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHH
T ss_pred HHHCCCcCEEEeccccCHh-HhceEEEcc-chH-hcceEEEEECCCCCcCChhhhhhcCcccCeEEEEEcCChHHHHHHH
Confidence 5778999999866522111 001111100 000 01123333322 3556664 277888742211 234455
Q ss_pred hCCCCe--EEe-ccCcHHHHHhhhcc--CCccEEEehhhhhhhc
Q psy11424 72 FFPSLI--IKS-LRGNIDTRLNKLDK--GEYAAIILAAAGLKRL 110 (245)
Q Consensus 72 ~~pdl~--~~~-iRGNV~TRL~KL~~--g~~DaiiLA~AGL~RL 110 (245)
.+|+.. +.. --.|.+.-+++|.+ |++||+|.-..-+..+
T Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~GrvDa~i~~~~~~~~~ 231 (294)
T 2rc8_A 188 SFPEMHEYMRRYNVPATPDGVQYLKNDPEKLDAFIMDKALLDYE 231 (294)
T ss_dssp HCHHHHHHHGGGCBSSHHHHHHHHHSSSCCCSEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhccCceeEEEecHHHHHHH
Confidence 555432 111 13578899999999 9999999877665543
No 79
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=38.61 E-value=20 Score=29.69 Aligned_cols=48 Identities=8% Similarity=0.068 Sum_probs=37.7
Q ss_pred CeEeeCcH-------HHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEeh
Q psy11424 56 AVVGTNSL-------RRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILA 103 (245)
Q Consensus 56 a~IGTsS~-------RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA 103 (245)
-+||+++. +--.++...+|++++.-.-+|-+.-++.|.+|++|..|..
T Consensus 103 l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~ 157 (310)
T 2esn_A 103 FVFAATDYTAFALLPPLMNRLQHSAPGVRLRLVNAERKLSVEALASGRIDFALGY 157 (310)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHHSTTCEEEEECCSSSCCHHHHHHTSSSEEEEC
T ss_pred EEEEeChHHHHHHHHHHHHHHHHHCCCeEEEEEeCCcccHHHHHHcCCCCEEEec
Confidence 47888753 2346677889999999988887767778999999988765
No 80
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=37.29 E-value=36 Score=27.72 Aligned_cols=48 Identities=10% Similarity=-0.072 Sum_probs=38.8
Q ss_pred CeEeeCc-------HHHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEeh
Q psy11424 56 AVVGTNS-------LRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILA 103 (245)
Q Consensus 56 a~IGTsS-------~RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA 103 (245)
-+||++. +..-.++.+.+|++++.-.-++-+.-+..|.+|++|..|..
T Consensus 93 l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~ 147 (294)
T 1ixc_A 93 LSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSR 147 (294)
T ss_dssp EEEEECSGGGGTHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEES
T ss_pred EEEEEccchhHHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHCCCccEEEEe
Confidence 3577653 34567788889999999999998888899999999988764
No 81
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=36.30 E-value=24 Score=29.25 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=40.3
Q ss_pred CeEeeCcH-------HHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEehh
Q psy11424 56 AVVGTNSL-------RRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAA 104 (245)
Q Consensus 56 a~IGTsS~-------RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~ 104 (245)
-+||+++. ..-.++...+|++++.-.-++-+.-+..|.+|++|..|...
T Consensus 94 l~I~~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~~~~~l~~g~~Dlai~~~ 149 (305)
T 3fxq_A 94 ITFAASPAIALAALPLALASFAREFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAA 149 (305)
T ss_dssp EEEEECHHHHHTHHHHHHHHHHHHCTTCEEEEEECCTTTTHHHHHHTSSSEEEEEC
T ss_pred EEEEechHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHcCCCCEEEecC
Confidence 36777653 34567888999999999999999999999999999988754
No 82
>3up9_A Putative uncharacterized protein; membrane lipoprotein, L-methionine binding protein, NLPA LIP structural genomics; HET: PG4 PE4; 2.35A {Actinomyces odontolyticus} SCOP: c.94.1.0
Probab=36.12 E-value=18 Score=31.61 Aligned_cols=146 Identities=14% Similarity=0.111 Sum_probs=79.4
Q ss_pred ccccCCccEEee--c--CCCCCCCCCCCeeEEEecCCCCCCeEEEEcCCCCCCCCCCCCeEeeCc----HHHHHHHHHh-
Q psy11424 2 AIIKGKADLAVH--S--LKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNS----LRRKVLIKSF- 72 (245)
Q Consensus 2 aLl~g~iDiAVH--S--lKDlP~~l~~gL~iaav~~R~dprDvlv~~~~~~l~~lp~ga~IGTsS----~RR~aql~~~- 72 (245)
||.+|+||+..- . |...-. ..|..+..+-.=.-..=.+.|++++++++||.|++|+.+. .=|.-.|+..
T Consensus 51 AL~~G~IDaN~fQH~pyL~~~nk--~~g~~lv~v~~~~~~p~giYS~k~ksl~dL~~Ga~IaIPnD~tN~~RaL~lL~~a 128 (245)
T 3up9_A 51 ALNDGDLDANFYQTVPYLENAEK--QFGYNFEAGEGIHLEPLGVFSNKHKSLDELPDGGTIGIISDTANQSRALELLATQ 128 (245)
T ss_dssp HHHTTSCSEEEEEEHHHHHHHHH--HHCCCEEECCCCEECCCEEECSSCSCGGGCCTTEEEEEECSHHHHHHHHHHHHHT
T ss_pred HHHcCCCceeccCCHHHHHHHHH--HCCCCEEEEeeecccceEEEeCCCCCHHHcCcCCEEEEecCcchHHHHHHHHHHC
Confidence 788899998753 1 110000 1133444443322222356788899999999999999654 3456565542
Q ss_pred -----CC--------------CCeEEeccCcHHHHHhhhccCCccEEEehhhhhhhcCCcc---ceeeecCCCCcCCCCC
Q psy11424 73 -----FP--------------SLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQK---RIRMLFSPNQILPAPG 130 (245)
Q Consensus 73 -----~p--------------dl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLg~~~---~~~~~l~~~~~~PA~g 130 (245)
.+ +++|+.+-..---| -| .++|+.|+---=...-|+.. .+ +++. |...
T Consensus 129 GLIkLk~~~~~~~~~T~~DIk~lk~~e~daaqlpr--~l--~dvd~avin~nya~~agl~p~~dal--~~E~----~~~~ 198 (245)
T 3up9_A 129 GLVSIPEGDGDVNINTVTKLKNFDFREVEGPQLVR--SL--DDFDYAVINGNFAQEGGKTISGDAL--VVES----PVDN 198 (245)
T ss_dssp TSEECCCCC--CSTTTSEESSSEEEEEECGGGHHH--HT--TTSSEEEECHHHHHHTTCCHHHHCS--EECC----CTTC
T ss_pred CCEEecCCCCCcCcCChhhccccEEEEeCHHHHhh--hc--ccCCEEEEchhHHHHcCcCcccCee--EECC----CCCC
Confidence 22 33444443332222 12 36888876432223333331 11 1111 1223
Q ss_pred CceEEEEEec---CcHHHHHHhhcCCChhhHH
Q psy11424 131 QGAIAIEILD---NRKELMEMLIPLNHYFSEQ 159 (245)
Q Consensus 131 QGalave~r~---~d~~~~~ll~~l~~~~t~~ 159 (245)
+=+.-|.+|+ |++++..+.+.++.++...
T Consensus 199 py~nviavr~~~~d~~~~k~lv~a~~s~evk~ 230 (245)
T 3up9_A 199 PAVNVLVWKGDSKKVDAIAKLEKLLHSDEVKQ 230 (245)
T ss_dssp CCEEEEEEETTCTTHHHHHHHHHHHTSHHHHH
T ss_pred CcEEEEEEeccccCCHHHHHHHHHHCCHHHHH
Confidence 4456677776 4578899999999887643
No 83
>2p5x_A ASMTL, N-acetylserotonin O-methyltransferase-like protei; structural genomics, structural genomics consortium, unknown function; 2.00A {Homo sapiens}
Probab=35.55 E-value=22 Score=30.63 Aligned_cols=31 Identities=13% Similarity=0.229 Sum_probs=23.3
Q ss_pred CeEeeCcHHHHHHHHHhCCCCeEEeccCcHHHH
Q psy11424 56 AVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTR 88 (245)
Q Consensus 56 a~IGTsS~RR~aql~~~~pdl~~~~iRGNV~TR 88 (245)
-+.+++|+||+..|..+.-++++ +.=|||..
T Consensus 6 lILAS~SPrR~eLL~~~Gi~f~v--~~~~iDE~ 36 (230)
T 2p5x_A 6 VVLASASPRRQEILSNAGLRFEV--VPSKFKEK 36 (230)
T ss_dssp EEECCCCHHHHHHHHHTTCCCEE--CCCCCCCC
T ss_pred EEEeCCCHHHHHHHHHCCCCeEE--eCCCCCCC
Confidence 58999999999999998655544 44566654
No 84
>4ib2_A Putative lipoprotein; putative methionine-bindning, NLPA lipoprotein, PF03180 FAMI structural genomics, joint center for structural genomics; 1.76A {Ruminococcus gnavus}
Probab=34.59 E-value=21 Score=31.27 Aligned_cols=149 Identities=13% Similarity=0.076 Sum_probs=79.8
Q ss_pred ccccCCccEEeecCCCCCCC----CCCCeeEEEecCCCCCCeEEEEcCCCCCCCCCCCCeEeeCc----HHHHHHHHHhC
Q psy11424 2 AIIKGKADLAVHSLKDIPMN----LPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNS----LRRKVLIKSFF 73 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~----l~~gL~iaav~~R~dprDvlv~~~~~~l~~lp~ga~IGTsS----~RR~aql~~~~ 73 (245)
||.+|++|+..--.. |.- -..|..+.++-.=....=.+.|++.+++.+||.|++|+.+. .=|.-+|+..-
T Consensus 54 AL~~G~iDaN~fQh~--pyL~~~~k~~g~~lv~v~~~~~~p~glyS~kiksl~dLk~Ga~IAipnd~sN~~RaL~lL~~a 131 (252)
T 4ib2_A 54 VVESGEFDANYFQHV--PYLESFNEEKGTHLVDAGDIHYEPFGIYPGTKKSLDEISEGDKIAVPNDTTNEARALLLLQDN 131 (252)
T ss_dssp HHHTTSSSEEEEEEH--HHHHHHHHHHCCCEEEEEEEEECCCEEEESSCSCGGGCCTTCEEEEECSHHHHHHHHHHHHHT
T ss_pred HHHcCCcCeeecCCH--HHHHHHHHHCCCCEEEEeeccccceEeecCCcCCHHHcCCCCEEEeeCCCCHHHHHHHHHHHC
Confidence 788999998743211 100 01133333332211222366788999999999999999754 34555665432
Q ss_pred C----------------------CCeEEeccCcHHHHHhhhccCCccEEEehhhhhhhcCCcc---ceeeecCCCCcCCC
Q psy11424 74 P----------------------SLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQK---RIRMLFSPNQILPA 128 (245)
Q Consensus 74 p----------------------dl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLg~~~---~~~~~l~~~~~~PA 128 (245)
- +++|+++-..---| -| .++|+.|+---=...-|+.. .+ +++... -++
T Consensus 132 GLIkLk~~~~~~~t~~DI~~Npk~lk~~el~aaql~r--~l--~dvD~avin~n~a~~agl~p~~dal--~~E~~~-~~~ 204 (252)
T 4ib2_A 132 GIITLKDGAGLNATVNDIEENPYNVEIVELEAAQVAR--VT--GETAYVVLNGNYALEAGYSVAKDAL--AYEKSD-SEA 204 (252)
T ss_dssp TSCEECTTCGGGCCGGGEEECTTCCEEEEECGGGGGG--GT--TTSSEEEECHHHHHHTTCCHHHHCS--EECCTT-BHH
T ss_pred CCEEecCCCCCCCCHHHHhcCCCCcEEEEcCHHHHHh--hh--ccCCEEEEchhHHHHcCCCCcccee--EecCCC-ccc
Confidence 2 34566554332222 22 36888876322222233321 11 111100 001
Q ss_pred CCCceEEEEEec---CcHHHHHHhhcCCChhhHH
Q psy11424 129 PGQGAIAIEILD---NRKELMEMLIPLNHYFSEQ 159 (245)
Q Consensus 129 ~gQGalave~r~---~d~~~~~ll~~l~~~~t~~ 159 (245)
.-+=+.-|.+|+ |++++..+++.++.++...
T Consensus 205 ~~~y~Niiavr~~~~d~~~~k~lv~a~~s~evk~ 238 (252)
T 4ib2_A 205 AKTYVNIIAVKEGNEKEEKIQALVKALKSDEIKE 238 (252)
T ss_dssp HHHSEEEEEEETTCTTCHHHHHHHHHHTSHHHHH
T ss_pred CCCeeEEEEEecCccCCHHHHHHHHHHCCHHHHH
Confidence 123355667775 5688999999999887653
No 85
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=33.44 E-value=1.2e+02 Score=26.04 Aligned_cols=107 Identities=16% Similarity=0.120 Sum_probs=67.8
Q ss_pred ccccCCccEEeecC------------CCCCCCCCC--------------------------CeeEEEecCCCCCCeEEEE
Q psy11424 2 AIIKGKADLAVHSL------------KDIPMNLPS--------------------------GFILCAILKREDPRDAFIS 43 (245)
Q Consensus 2 aLl~g~iDiAVHSl------------KDlP~~l~~--------------------------gL~iaav~~R~dprDvlv~ 43 (245)
++..|.+|+++-+. =|+|.-.++ |+.+.++... .++ .+.+
T Consensus 51 ~v~~G~id~~~~~~~~~~~~~p~~~~~~lPfl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~~~-g~~-~~~~ 128 (316)
T 2vpn_A 51 QTQNGILQFVNQSPGFTGSLIPSAQIFFIPYLMPTDMDTVLEFFDESKAINEMFPKLYAEHGLELLKMYPE-GEM-VVTA 128 (316)
T ss_dssp HHHTTSCSEEEECHHHHHHHSGGGGGGGSTTCSCSSHHHHHHHHHHCHHHHTHHHHHHHTTTEEEEEEEEE-EEE-EEEE
T ss_pred HHhCCCceEEeecchhhhccCcchhheecCeecCCHHHHHHHHHcCchHHHHHHHHHHHHcCCEEEEeecC-Cce-EEec
Confidence 67789999998762 167765444 5677766532 233 3445
Q ss_pred cC-CCCCCCCCCCCeEee-CcHHHHHHHHHhCCCCeEEecc-CcHHHHHhhhccCCccEEEehhhhhhhcCCccce
Q psy11424 44 ND-YISLSTLPKNAVVGT-NSLRRKVLIKSFFPSLIIKSLR-GNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRI 116 (245)
Q Consensus 44 ~~-~~~l~~lp~ga~IGT-sS~RR~aql~~~~pdl~~~~iR-GNV~TRL~KL~~g~~DaiiLA~AGL~RLg~~~~~ 116 (245)
++ -.+++|| +|-+|.| .|.=-...++.+ ....+++- +.|-|- |++|.+||.......+.-+++.+..
T Consensus 129 ~~pI~s~~Dl-kG~KiR~~~~~~~~~~~~~l--Ga~pv~m~~~Evy~A---Lq~G~VDg~~~~~~~~~~~~~~ev~ 198 (316)
T 2vpn_A 129 DEPITSPEDF-DNKKIRTMTNPLLAETYKAF--GATPTPLPWGEVYGG---LQTGIIDGQENPIFWIESGGLYEVS 198 (316)
T ss_dssp SSCCCSGGGG-TTCEEEECSCHHHHHHHHHH--TCEEEECCGGGHHHH---HHHTSCSEEEEEHHHHHHTTGGGTC
T ss_pred CCCCCChHHh-CCCEEEeCCCHHHHHHHHHc--CCeeeecCHHHHHHH---HHcCCcceeeCCHHHHHhcCHHHhh
Confidence 32 3467777 7889988 343223344444 46666654 445555 4579999999998888888775443
No 86
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=31.35 E-value=1.4e+02 Score=26.22 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=56.8
Q ss_pred cCCccEEeecCCCCCCCC------CCCeeEEEecCCCCCCeEEEEcCC---CCCCCCCCCCeEeeCcHH-----------
Q psy11424 5 KGKADLAVHSLKDIPMNL------PSGFILCAILKREDPRDAFISNDY---ISLSTLPKNAVVGTNSLR----------- 64 (245)
Q Consensus 5 ~g~iDiAVHSlKDlP~~l------~~gL~iaav~~R~dprDvlv~~~~---~~l~~lp~ga~IGTsS~R----------- 64 (245)
.|.+|++.. .-++|..+ +..+.+.++.... +...++.++. +++.+| +|-+||+++..
T Consensus 63 ~~~~d~~~~-~g~~~~~~a~~~g~~~~~~~v~~~~~~-~~~~i~v~~ds~I~s~~DL-kGk~Igv~~~~~~~~~gs~~~~ 139 (365)
T 2de3_A 63 YDQPAYTRF-GGEIPPLLSEGLRAPGRTRLLGITPLL-GRQGFFVRDDSPITAAADL-AGRRIGVSASAIRILRGQLGDY 139 (365)
T ss_dssp CCSTTEEEE-ECSHHHHHHHHTTCTTSEEEEEEEEEC-CSEEEEEETTCSCCSGGGG-TTCEEEECHHHHHHHHTCCTTG
T ss_pred ccCchhhhh-cCCcHHHHHHhcCCCCCeEEEEEeccC-CcceEEECCCCCCCCHHHh-CCCeEEeecccccccCCCcccc
Confidence 356676543 24444211 2246777665433 3466666543 467777 58899986510
Q ss_pred ------------------H--HHHHHHh---CCCCeEEeccCcH-----H-------------------HHHhhhccCCc
Q psy11424 65 ------------------R--KVLIKSF---FPSLIIKSLRGNI-----D-------------------TRLNKLDKGEY 97 (245)
Q Consensus 65 ------------------R--~aql~~~---~pdl~~~~iRGNV-----~-------------------TRL~KL~~g~~ 97 (245)
| ...|+.. ..|++++.+...- + +.+.-|.+|++
T Consensus 140 ~~~~~~~~~~~~~gs~~~~~~~~~L~~~Gl~~~dv~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~G~v 219 (365)
T 2de3_A 140 LELDPWRQTLVALGSWEARALLHTLEHGELGVDDVELVPISSPGVDVPAEQLEESATVKGADLFPDVARGQAAVLASGDV 219 (365)
T ss_dssp GGSCHHHHHHHHTTHHHHHHHHHHHHHTTCCGGGSEEEECCCTTTCCCHHHHHHSSBSSHHHHSTTHHHHHHHHHHSSSC
T ss_pred cccchhhhhhhccchhhHHHHHHHHHHcCCCHHHeEEEECCCccccccccccccccccccccccccchhhHHHHHhCCCc
Confidence 0 1122222 1368888876531 0 25788999999
Q ss_pred cEEEehhhh
Q psy11424 98 AAIILAAAG 106 (245)
Q Consensus 98 DaiiLA~AG 106 (245)
||+++...-
T Consensus 220 DA~~~~~p~ 228 (365)
T 2de3_A 220 DALYSWLPW 228 (365)
T ss_dssp SEEEEEHHH
T ss_pred CEEEEcchh
Confidence 999986543
No 87
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=31.09 E-value=45 Score=27.29 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=39.2
Q ss_pred CeEeeCcH-------HHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEeh
Q psy11424 56 AVVGTNSL-------RRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILA 103 (245)
Q Consensus 56 a~IGTsS~-------RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA 103 (245)
-+||+++. ..-..++..+|++++.-.-+|-+.-+..|.+|++|-.|..
T Consensus 97 l~i~~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~ 151 (306)
T 3fzv_A 97 IDIGCFETVAPLYLPGLIAGFRQAYPGVEIRIRDGEQQELVQGLTSGRFDLAFLY 151 (306)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHHTSCSEEEEC
T ss_pred EEEEechhhhHHHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHCCCccEEEEe
Confidence 36887543 3456777889999999999999998999999999988864
No 88
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=30.39 E-value=44 Score=26.04 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHHHhhHH
Q psy11424 215 PIDTPETVGLYAAELLKKKGAI 236 (245)
Q Consensus 215 ~~~~a~~lg~~la~~l~~~ga~ 236 (245)
+.+.|..+|..+|+.++++|..
T Consensus 70 n~~AA~~vG~llA~Ral~~GI~ 91 (120)
T 1ovy_A 70 NIEAAKKVGELVAKRALEKGIK 91 (120)
T ss_dssp SHHHHHHHHHHHHHHHHHHSSS
T ss_pred cHHHHHHHHHHHHHHHHHCCCC
Confidence 4556889999999999999853
No 89
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=29.60 E-value=52 Score=27.64 Aligned_cols=48 Identities=15% Similarity=0.096 Sum_probs=39.7
Q ss_pred CeEeeCc-------HHHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEeh
Q psy11424 56 AVVGTNS-------LRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILA 103 (245)
Q Consensus 56 a~IGTsS-------~RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA 103 (245)
-+||+++ +..-.++...+|++++.-.-++-+.-+..|.+|++|-.|..
T Consensus 95 l~I~~~~~~~~~~l~~~l~~f~~~~P~v~i~l~~~~~~~~~~~l~~g~~Dlai~~ 149 (324)
T 1al3_A 95 LYVATTHTQARYALPGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIAT 149 (324)
T ss_dssp EEEEECHHHHHHTSHHHHHHHHHHCTEEEEEEEECCHHHHHHHHHTTCCSEEEES
T ss_pred EEEEechhhhhhHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCceEEEEe
Confidence 4788874 24456788889999999999998888999999999988764
No 90
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=27.17 E-value=45 Score=27.93 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=38.1
Q ss_pred CeEeeCcH-------HHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEeh
Q psy11424 56 AVVGTNSL-------RRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILA 103 (245)
Q Consensus 56 a~IGTsS~-------RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA 103 (245)
-+||+++. +--.++...+|++++.-.-++-+.-+..|.+|++|..|..
T Consensus 107 l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~ 161 (315)
T 1uth_A 107 FNLAMTDIGEMYFMPPLMEALAQRAPHIQISTLRPNAGNLKEDMESGAVDLALGL 161 (315)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHHCTTCEEEEECTTSSCHHHHHHHTSCCEEEEC
T ss_pred EEEEechHHHHHHHHHHHHHHHHHCCCcEEEEEeCCcccHHHHHHCCCCCEEEec
Confidence 47888742 2235677789999999988988888889999999988764
No 91
>1wlo_A SUFE protein; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; NMR {Thermus thermophilus}
Probab=26.15 E-value=41 Score=26.58 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=29.1
Q ss_pred HHHHHhhcCCChhhHHHHHHHHH---------HHHHhccCCCcceeeEEEEeccCCC-eEEEEE
Q psy11424 144 ELMEMLIPLNHYFSEQTVKAERA---------VSRNFNGSCKISLAAFAMVNNFNES-EINLRA 197 (245)
Q Consensus 144 ~~~~ll~~l~~~~t~~~v~aER~---------~l~~L~ggC~~Piga~a~~~~~~~~-~l~l~~ 197 (245)
++.+-|+.+ +++.+.....|-+ +=...=-||+++|-.+++.. +++ ++++.|
T Consensus 8 ~ii~~F~~~-~~e~Ry~~LI~lgk~Lp~lpe~~~~~~V~GCqS~VWl~~~~~--~~g~~l~f~~ 68 (136)
T 1wlo_A 8 QALELFKSL-PKELRSQVLLEYAAKVPPPPPGVELERVHECQTPFFVHADVE--GGKVRLYFHV 68 (136)
T ss_dssp HHHHHHHHS-CHHHHHHHHHHHHHTCCCCCSSCCCEECTTSSSCCEEEEEEE--TTEEEEEEEC
T ss_pred HHHHHHHcC-CHHHHHHHHHHHHhhCCCCChhhhhccCCCCccCeEEEEEEe--CCceEEEEec
Confidence 344555566 5555555444322 00111269999999999862 333 677765
No 92
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=26.03 E-value=1e+02 Score=23.60 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=26.8
Q ss_pred EEEEEEcCCCcEEEEEEE-------ecCCCCHHHHHHHHHHHHHHhhHH
Q psy11424 195 LRAIITNPNGLKIITAEV-------NGPIDTPETVGLYAAELLKKKGAI 236 (245)
Q Consensus 195 l~~~v~~~dG~~~~~~~~-------~~~~~~a~~lg~~la~~l~~~ga~ 236 (245)
+.+.+.+.+|...+-.-. .++.+.|..+|..+|+..+++|..
T Consensus 35 iyAQiidd~~~~tlasAsT~e~~~k~~n~~AA~~vG~llA~ra~~~GI~ 83 (112)
T 3v2d_S 35 IYAQIIDDEKGVTLVSASSLALKLKGNKTEVARQVGRALAEKALALGIK 83 (112)
T ss_dssp EEEEEEETTTTEEEEEEETTTTTCCCCHHHHHHHHHHHHHHHHHTTTCC
T ss_pred EEEEEEecCCCeEEEEEEecchhccCCCHHHHHHHHHHHHHHHHHCCCC
Confidence 444555555555443322 233456889999999999998853
No 93
>2i6e_A Hypothetical protein; NYSGXRC,10093B, structural genomics, PSI-2, protein structure initiative; 2.50A {Deinococcus radiodurans} SCOP: c.94.1.1
Probab=25.20 E-value=90 Score=27.04 Aligned_cols=94 Identities=13% Similarity=0.118 Sum_probs=51.8
Q ss_pred ccccCCccEEeecCCCCCCCCCCCeeEE---EecCCCCCCeEEEEcCCCCCCCCCCCCeEeeCcHHHHHH------HHHh
Q psy11424 2 AIIKGKADLAVHSLKDIPMNLPSGFILC---AILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKVL------IKSF 72 (245)
Q Consensus 2 aLl~g~iDiAVHSlKDlP~~l~~gL~ia---av~~R~dprDvlv~~~~~~l~~lp~ga~IGTsS~RR~aq------l~~~ 72 (245)
+|++|++|++.=|.=-.+. ..+.+.+. ++.......-++|.++ .++.+| -+|+++.--.... |.+.
T Consensus 53 ~l~~G~lDi~~vs~~~~~~-~~~~~~~l~~~~i~a~g~v~s~~lv~~-~~i~~L---k~Va~~~~s~t~~~Ll~~lL~~~ 127 (301)
T 2i6e_A 53 ALLSGEVDIANVSAVEFIR-HADTLAALPDFSVAVLGPVYSVNLFHT-CPLPEL---RRVALTSQSAMSVALLEVLLRQK 127 (301)
T ss_dssp HHHHSSCSEEEEEHHHHHH-TTTTEEEEEEEEEEESSCCSSEEEEES-SCGGGC---CEEEECTTCHHHHHHHHHHHHHT
T ss_pred HHHCCCCCEEEeCHHHHHh-hhCcEEEecCeEEEeeCCcceEEEEeC-CCHHHc---CEEEECCCChHHHHHHHHHHHHC
Confidence 6789999999655532222 23333322 4455555566655544 567888 5788765444322 2221
Q ss_pred CCCCeEEeccCcHHHHHhhhccCCccEEEehh
Q psy11424 73 FPSLIIKSLRGNIDTRLNKLDKGEYAAIILAA 104 (245)
Q Consensus 73 ~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~ 104 (245)
--+.+++.+-.....- .++++||.++.-
T Consensus 128 Gl~~~~~~~~~~~~~~----l~~~~da~l~ig 155 (301)
T 2i6e_A 128 GLSPVLERAEGTAESL----LAAGYDGVLRIG 155 (301)
T ss_dssp TCCCEEEECCSCHHHH----HTTTCSEEEEES
T ss_pred CCCcEEEeCCchHHHH----hccCcCEEEEEC
Confidence 1223566554443332 248899988764
No 94
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=25.12 E-value=72 Score=27.09 Aligned_cols=48 Identities=10% Similarity=0.062 Sum_probs=36.9
Q ss_pred CeEeeCcHHH-------HHHHHHh---C--CCCeEEeccCcHHHHHhhhccCCccEEEeh
Q psy11424 56 AVVGTNSLRR-------KVLIKSF---F--PSLIIKSLRGNIDTRLNKLDKGEYAAIILA 103 (245)
Q Consensus 56 a~IGTsS~RR-------~aql~~~---~--pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA 103 (245)
-+||++|.-= ..+.++. + |++++....||-.+=+++|.+|++|-.+.+
T Consensus 22 L~Ig~~~~~~~~~lp~ll~~F~~~~~~~~~P~v~v~l~~~~s~~l~~~l~~G~~Dl~i~~ 81 (294)
T 3cvg_A 22 LRIGNGGAGQSGLVKELADAFIKSKVDSGSAPFKVAWYKSDTTVTINYLKDGIVDVGITY 81 (294)
T ss_dssp EEEEESHHHHHTHHHHHHHHHHHHHHSCC---CEEEEEECCHHHHHHHHHTTSCSEEEES
T ss_pred EEEEeccchhHHHHHHHHHHHHhhhcccCCCCeEEEEEeCCHHHHHHHHHcCCCcEEEEc
Confidence 4799766432 3445666 8 999999999999999999999999988775
No 95
>3j0c_B E2 envelope glycoprotein; alphavirus, bioweapon; 4.80A {Venezuelan equine encephalitis virus}
Probab=24.85 E-value=34 Score=32.13 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=18.8
Q ss_pred cCCCcceeeEEEEeccCCCeEEEE
Q psy11424 173 GSCKISLAAFAMVNNFNESEINLR 196 (245)
Q Consensus 173 ggC~~Piga~a~~~~~~~~~l~l~ 196 (245)
|.|++||++-..+.++.|+.|.+.
T Consensus 25 g~C~SPIaIE~V~sea~DG~lrIQ 48 (423)
T 3j0c_B 25 GSCHSPIAIEAVKSDGHDGYVRLQ 48 (423)
T ss_dssp SCEEETTCEEEEECCCTTSEEEEE
T ss_pred CCCCCcceeeehhccCCCceEEEE
Confidence 589999999998866667766554
No 96
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Probab=23.64 E-value=85 Score=27.69 Aligned_cols=50 Identities=14% Similarity=0.022 Sum_probs=38.9
Q ss_pred eEeeCcHHHHHHHHHhCCCCeEEeccCcHHHHHhhhccCCccEEEehhhh
Q psy11424 57 VVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAG 106 (245)
Q Consensus 57 ~IGTsS~RR~aql~~~~pdl~~~~iRGNV~TRL~KL~~g~~DaiiLA~AG 106 (245)
+|+|.|.+|...++.+--+..+-.-..++..+++++..|.+|.++=+..+
T Consensus 192 Vi~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~ 241 (371)
T 3gqv_A 192 PIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITN 241 (371)
T ss_dssp EEEEECGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCS
T ss_pred EEEEeCHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCc
Confidence 78999999988888876654444445688889999988889999866544
No 97
>3j0f_I E2 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1z8y_J
Probab=22.16 E-value=52 Score=30.93 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=18.3
Q ss_pred cCCCcceeeEEEEeccCCCeEEEE
Q psy11424 173 GSCKISLAAFAMVNNFNESEINLR 196 (245)
Q Consensus 173 ggC~~Piga~a~~~~~~~~~l~l~ 196 (245)
..|++||++-..+.++.|+.|.+.
T Consensus 23 ~~C~SPIaIE~V~sea~DG~lrIQ 46 (423)
T 3j0f_I 23 VPCFSPVKIEQVWDEADDNTIRIQ 46 (423)
T ss_pred CccCCcceeeeeeccCCCceEEEE
Confidence 369999999998865666766654
No 98
>3n40_P P62 envelope glycoprotein; viral protein, immature heterodimer, alphavirus, receptor BI membrane fusion; HET: NAG NDG; 2.17A {Chikungunya virus} PDB: 3n44_B* 3n41_B* 3n42_B* 3n43_B* 2xfb_B 3n44_A* 3n41_A* 3n42_A* 3n43_A*
Probab=20.52 E-value=44 Score=31.16 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=18.3
Q ss_pred cCCCcceeeEEEEeccCCCeEEEE
Q psy11424 173 GSCKISLAAFAMVNNFNESEINLR 196 (245)
Q Consensus 173 ggC~~Piga~a~~~~~~~~~l~l~ 196 (245)
..|++||++-..+.++.++.|.+.
T Consensus 86 ~~C~SPIaIE~V~~ea~DG~lrIQ 109 (401)
T 3n40_P 86 HSCHSPVALERIRNEATDGTLKIQ 109 (401)
T ss_dssp CCEEETTCEEEEECCCTTCCEEEE
T ss_pred CccCCcceeeehhccCCCceEEEE
Confidence 369999999998866666765553
Done!