RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11424
(245 letters)
>gnl|CDD|234612 PRK00072, hemC, porphobilinogen deaminase; Reviewed.
Length = 295
Score = 320 bits (823), Expect = e-111
Identities = 117/231 (50%), Positives = 156/231 (67%), Gaps = 3/231 (1%)
Query: 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTN 61
A+++G+ D+AVHSLKD+P LP G +L AI +REDPRDA +S DY SL LP+ AVVGT+
Sbjct: 68 ALLEGEIDIAVHSLKDVPTELPEGLVLAAIPEREDPRDALVSRDYKSLDDLPEGAVVGTS 127
Query: 62 SLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFS 121
SLRR+ + + P L IK LRGN+DTRL KLD+GEY AIILAAAGLKRL L+ RI
Sbjct: 128 SLRRQAQLLALRPDLEIKPLRGNVDTRLRKLDEGEYDAIILAAAGLKRLGLEDRITEYLD 187
Query: 122 PNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAA 181
P ++LPAPGQGA+ IE + +E++E+L PLNH + V AERA R G C++ + A
Sbjct: 188 PEEMLPAPGQGALGIECRADDEEILELLAPLNHEETRLRVTAERAFLRALEGGCQVPIGA 247
Query: 182 FAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKK 232
+A E+ LR ++ +P+G +II AE+ GP E +G+ AE L
Sbjct: 248 YA---ELEGDELRLRGLVGSPDGSEIIRAEIEGPAADAEELGIELAEELLA 295
>gnl|CDD|223259 COG0181, HemC, Porphobilinogen deaminase [Coenzyme metabolism].
Length = 307
Score = 296 bits (761), Expect = e-101
Identities = 118/240 (49%), Positives = 162/240 (67%), Gaps = 2/240 (0%)
Query: 1 MAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGT 60
A+++G+ D+AVHSLKD+P LP G +L AI +REDPRDA +S D L LP+ AVVGT
Sbjct: 66 QALLEGEIDIAVHSLKDVPTELPEGLVLAAIPEREDPRDALVSRDGYDLEELPEGAVVGT 125
Query: 61 NSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLF 120
+SLRR+ +K+ P L I+ LRGN+DTRL KLD+GEY AIILAAAGLKRL L+ RI +
Sbjct: 126 SSLRRQAQLKALRPDLKIEPLRGNVDTRLRKLDEGEYDAIILAAAGLKRLGLENRITEIL 185
Query: 121 SPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLA 180
P + LPAPGQGA+AIE ++++E+L LN + V AERA R G C++ +
Sbjct: 186 DPEEFLPAPGQGALAIECRAGDEKVLELLAELNDEDTRICVTAERAFLRELEGGCQVPIG 245
Query: 181 AFAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEIIK 240
A+A + E+ LRA++ +P+G +II AE+ G + E +G AE L +KGA EI++
Sbjct: 246 AYAELT--GGGELRLRALVGSPDGSQIIKAEIRGDAEDAEELGKELAEELLEKGAKEILE 303
>gnl|CDD|238276 cd00494, HMBS, Hydroxymethylbilane synthase (HMBS), also known as
porphobilinogen deaminase (PBGD), is an intermediate
enzyme in the biosynthetic pathway of tetrapyrrolic ring
systems, such as heme, chlorophylls, and vitamin B12.
HMBS catalyzes the conversion of porphobilinogen (PBG)
into hydroxymethylbilane (HMB). HMBS consists of three
domains, and is believed to bind substrate through a
hinge-bending motion of domains I and II. HMBS is found
in all organisms except viruses.
Length = 292
Score = 286 bits (735), Expect = 1e-97
Identities = 113/232 (48%), Positives = 150/232 (64%), Gaps = 2/232 (0%)
Query: 1 MAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGT 60
A++ G+ DLAVHSLKD+P LP G +L AI KREDPRDA +S + SL LP +VVGT
Sbjct: 63 EALLNGEIDLAVHSLKDVPTELPEGLVLGAIPKREDPRDALVSRNGSSLEDLPAGSVVGT 122
Query: 61 NSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLF 120
+SLRR+ +K P L + LRGN+DTRL KLD+GEY AIILAAAGLKRL L+ RI
Sbjct: 123 SSLRRQAQLKRKRPDLKFEPLRGNVDTRLRKLDEGEYDAIILAAAGLKRLGLEDRITQYL 182
Query: 121 SPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLA 180
SP +LPA GQGA+AIE +EL+ +L PLNH + V AERA R G C++ +
Sbjct: 183 SPEVMLPAVGQGALAIECRKGDEELLALLKPLNHEETALCVLAERAFLRELEGGCQVPIG 242
Query: 181 AFAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKK 232
+A ++ E+ L+ ++ +P+G ++I EV G I+ E +G AE L
Sbjct: 243 VYAELD--GGEELKLKGLVGSPDGKRLIEGEVRGNIEDAEELGKKLAEELLA 292
>gnl|CDD|232876 TIGR00212, hemC, porphobilinogen deaminase. Alternate name
hydroxymethylbilane synthase Biosynthesis of cofactors,
prosthetic groups, and carriers: Heme and porphyrin
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 292
Score = 264 bits (677), Expect = 7e-89
Identities = 110/232 (47%), Positives = 149/232 (64%), Gaps = 3/232 (1%)
Query: 1 MAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGT 60
A++ G+ DLAVHSLKD+P LP G + A+LKREDPRD +S Y+SL +LP+ A VGT
Sbjct: 63 QALLDGEIDLAVHSLKDVPTVLPEGLEIAAVLKREDPRDVLVSRKYLSLDSLPQGAKVGT 122
Query: 61 NSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLF 120
+SLRRK +K+ P L I+ LRGNIDTRL KLD+GEY AIILA AGLKRL L+ I +
Sbjct: 123 SSLRRKAQLKAIRPDLKIEPLRGNIDTRLRKLDEGEYDAIILAEAGLKRLGLEDVITEVL 182
Query: 121 SPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLA 180
P +LPAPGQGAIA+E + E+ E+L +NH + AERA + G C+ +
Sbjct: 183 DPEVMLPAPGQGAIAVECRKDDTEIKEILKEINHPPTRVEATAERAFLKELGGGCQTPIG 242
Query: 181 AFAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKK 232
A+A N +++ L A++ + +G ++I E G I+ E A ELLK+
Sbjct: 243 AYAEYNG---NKLTLIAMVADLDGKEVIREEKEGNIEDAELGTEVAEELLKR 291
>gnl|CDD|216465 pfam01379, Porphobil_deam, Porphobilinogen deaminase, dipyromethane
cofactor binding domain.
Length = 213
Score = 225 bits (575), Expect = 2e-74
Identities = 84/148 (56%), Positives = 107/148 (72%)
Query: 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTN 61
A++ + D+AVHSLKD+P LP G +L AI KREDPRDA +S++ SL LP +VVGT+
Sbjct: 65 ALLNNEIDIAVHSLKDVPTELPEGLVLGAIPKREDPRDALVSSNGKSLEDLPAGSVVGTS 124
Query: 62 SLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFS 121
SLRR +K P L +SLRGN+DTRL KLD+GEY AIILAAAGLKRL L+ RI S
Sbjct: 125 SLRRSAQLKRKRPDLKFESLRGNVDTRLRKLDEGEYDAIILAAAGLKRLGLEDRITQSLS 184
Query: 122 PNQILPAPGQGAIAIEILDNRKELMEML 149
P+ +LPA GQGA+ IE KE++++L
Sbjct: 185 PDDMLPAVGQGALGIECRKGDKEMLDLL 212
>gnl|CDD|215373 PLN02691, PLN02691, porphobilinogen deaminase.
Length = 351
Score = 188 bits (480), Expect = 2e-58
Identities = 91/237 (38%), Positives = 134/237 (56%), Gaps = 5/237 (2%)
Query: 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTN 61
A++ G+ D+AVHS+KD+P LP G IL L RED RDAFIS SL+ LP +VVGT
Sbjct: 111 ALLSGRIDIAVHSMKDVPTYLPEGTILPCNLPREDVRDAFISLKAKSLAELPAGSVVGTA 170
Query: 62 SLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFS 121
SLRR+ I +P L + + RGN+ TRL KL +G A +LA AGLKRL++ + + S
Sbjct: 171 SLRRQSQILHKYPHLKVVNFRGNVQTRLRKLQEGVVDATLLALAGLKRLDMTEHATSILS 230
Query: 122 PNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAA 181
+++LPA QGAI I + +++E L LNH + V ERA +GSC+ +A
Sbjct: 231 TDEMLPAVAQGAIGIACRTDDDKMLEYLASLNHEETRLAVACERAFLAALDGSCRTPIAG 290
Query: 182 FAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGL---YAAELLKKKGA 235
+A + + + R ++ +P+G +++ GP + V + EL K G
Sbjct: 291 YARRD--KDGNCDFRGLVASPDGKQVLETSRKGPYVIDDAVAMGKDAGKELKSKAGP 345
>gnl|CDD|167150 PRK01066, PRK01066, porphobilinogen deaminase; Provisional.
Length = 231
Score = 109 bits (273), Expect = 5e-29
Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 11/155 (7%)
Query: 2 AIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTN 61
++ G+ DLA+HS KD+P P + AI DPRD + + LP+ +G++
Sbjct: 81 LVLSGQCDLAIHSAKDLPE--PPKLTVVAITAGLDPRDLLVYAEKYLSQPLPRRPRIGSS 138
Query: 62 SLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFS 121
SLRR+ L+K FPS II +RG I+ RL L++ +Y AI++A A + RL L R+ ++
Sbjct: 139 SLRREELLKLLFPSGIILDIRGTIEERLKLLEEKKYDAIVVAKAAVLRLGL----RLPYT 194
Query: 122 PNQILPAP---GQGAIAIEILDNRKELMEMLIPLN 153
+ LP P QG +AI + + + +PL
Sbjct: 195 --KELPPPYHPLQGRLAITASKHIRSWKGLFLPLG 227
>gnl|CDD|202802 pfam03900, Porphobil_deamC, Porphobilinogen deaminase, C-terminal
domain.
Length = 72
Score = 58.8 bits (143), Expect = 8e-12
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 159 QTVKAERAVSRNFNGSCKISLAAFAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDT 218
V AERA R G C++ + A+A++ + + L+ ++ +P+G ++ EV G I+
Sbjct: 2 LCVLAERAFLRELEGGCQVPIGAYAVLKD---GNLRLKGLVGSPDGTRVFEIEVRGDIED 58
Query: 219 PETVGLYAAELLKK 232
E +G AE L
Sbjct: 59 AEELGKKLAEELLA 72
>gnl|CDD|204088 pfam08888, HopJ, HopJ type III effector protein. Pathovars of
Pseudomonas syringae interact with their plant hosts via
the action of Hrp outer protein (Hop) effector proteins,
injected into plant cells by the type III secretion
system. The proteins in this family are called HopJ
after the original member HopPmaJ.
Length = 110
Score = 27.9 bits (63), Expect = 2.2
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 172 NGSCKISLAAFAMVNNFNESE 192
GSCKI AFA +N +E E
Sbjct: 49 EGSCKI--FAFAQLNGLSEEE 67
>gnl|CDD|234957 PRK01526, PRK01526, Maf-like protein; Reviewed.
Length = 205
Score = 28.3 bits (63), Expect = 2.9
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Query: 100 IILAAAGLKRLNLQKRIRMLFSPNQILPA 128
IILA++ R+ L RI+++ P+QI+PA
Sbjct: 10 IILASSSPARIELLNRIKII--PSQIIPA 36
>gnl|CDD|234807 PRK00648, PRK00648, Maf-like protein; Reviewed.
Length = 191
Score = 27.6 bits (62), Expect = 4.3
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 57 VVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYA 98
++ ++S RRK +++ F + ++ LD E
Sbjct: 6 ILASSSPRRKEILEGFRIPFEVVPSPFVEESYPYSLDPEEIT 47
>gnl|CDD|223538 COG0462, PrsA, Phosphoribosylpyrophosphate synthetase [Nucleotide
transport and metabolism / Amino acid transport and
metabolism].
Length = 314
Score = 27.9 bits (63), Expect = 4.4
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 216 IDTPETVGLYAAELLKKKGAIEII 239
IDT T+ AA+ LK++GA ++
Sbjct: 224 IDTGGTIAK-AAKALKERGAKKVY 246
>gnl|CDD|227614 COG5295, Hia, Autotransporter adhesin [Intracellular trafficking
and secretion / Extracellular structures].
Length = 715
Score = 27.9 bits (62), Expect = 6.5
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 82 RGNIDTRLNKLDKGEYA--AIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIE-- 137
++ ++ K+D+ A A LAAA L + L + + G+ A+A+
Sbjct: 627 NTELNGKIGKVDRDARAGIASALAAASLPQAYLPGKSMVSIGGGTY---RGESALALGVS 683
Query: 138 -ILDNRKELME 147
I DN + +++
Sbjct: 684 RISDNGRWVIK 694
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.376
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,835,622
Number of extensions: 1267934
Number of successful extensions: 1164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1158
Number of HSP's successfully gapped: 27
Length of query: 245
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 151
Effective length of database: 6,768,326
Effective search space: 1022017226
Effective search space used: 1022017226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)