RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11424
         (245 letters)



>d1pdaa1 c.94.1.1 (A:3-219) Porphobilinogen deaminase
           (hydroxymethylbilane synthase), N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 217

 Score =  134 bits (337), Expect = 2e-39
 Identities = 82/152 (53%), Positives = 106/152 (69%)

Query: 1   MAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGT 60
           +A+++ +AD+AVHS+KD+P+  P G  L  I +REDPRDAF+SN+Y SL  LP  ++VGT
Sbjct: 66  VALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGT 125

Query: 61  NSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLF 120
           +SLRR+  +    P LII+SLRGN+ TRL+KLD GEY AIILA AGLKRL L+ RIR   
Sbjct: 126 SSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAAL 185

Query: 121 SPNQILPAPGQGAIAIEILDNRKELMEMLIPL 152
            P   LPA GQGA+ IE   +     E+L  L
Sbjct: 186 PPEISLPAVGQGAVGIECRLDDSRTRELLAAL 217


>d1pdaa2 d.50.2.1 (A:220-307) Porphobilinogen deaminase
           (hydroxymethylbilane synthase), C-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 88

 Score = 73.7 bits (181), Expect = 7e-18
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 153 NHYFSEQTVKAERAVSRNFNGSCKISLAAFAMVNNFNESEINLRAIITNPNGLKIITAEV 212
           NH+ +   V AERA++    G+C++ + ++A + +    EI LR ++  P+G +II  E 
Sbjct: 1   NHHETALRVTAERAMNTRLEGACQVPIGSYAELID---GEIWLRGLVGAPDGSQIIRGER 57

Query: 213 NGPIDTPETVGLYAAELLKKKGAIEIIK 240
            G     E +G+  AE L   GA EI+ 
Sbjct: 58  RGAPQDAEQMGISLAEELLNNGAREILA 85


>d3ezma_ b.89.1.1 (A:) Cyanovirin-N {Cyanobacterium (Nostoc
           ellipsosporum) [TaxId: 45916]}
          Length = 101

 Score = 27.4 bits (61), Expect = 0.63
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 150 IPLNHYFSEQTVKAERAVSRNFNGSCK-ISLAAFAMVN--------NFNESEINLRAIIT 200
           I LN          +     NF  +C+   LA  + +          F  ++INL   I 
Sbjct: 34  IDLNSVIENVDGSLKWQ-PSNFIETCRNTQLAGSSELAAECKTRAQQFVSTKINLDDHIA 92

Query: 201 NPNG 204
           N +G
Sbjct: 93  NIDG 96


>d1n02a_ b.89.1.1 (A:) Cyanovirin-N {Cyanobacterium (Nostoc
           ellipsosporum) [TaxId: 45916]}
          Length = 102

 Score = 26.7 bits (59), Expect = 0.99
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 9/63 (14%)

Query: 150 IPLNHYFSEQTVKAERAVSRNFNGSCK-ISLAAF---AMVNN----FNESEINLRAIITN 201
           I L+ + +      +     NF+ +C   ++      +        +N S I+L ++I N
Sbjct: 36  INLDDHIANIDGTLKWQ-PSNFSQTCYNSAIQGSVLTSTCERTNGGYNTSSIDLNSVIEN 94

Query: 202 PNG 204
            +G
Sbjct: 95  VDG 97


>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase
           (MPP) alpha chain {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 220

 Score = 26.6 bits (57), Expect = 2.5
 Identities = 6/19 (31%), Positives = 10/19 (52%)

Query: 198 IITNPNGLKIITAEVNGPI 216
           + +  NGLK+ T+   G  
Sbjct: 8   LSSLANGLKVATSNTPGHF 26


>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol
           methylhydroxylase {Pseudomonas putida [TaxId: 303]}
          Length = 279

 Score = 25.8 bits (56), Expect = 4.9
 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 7/50 (14%)

Query: 92  LDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDN 141
               +  A        K   L+  I+    PN IL APG+  I    L+N
Sbjct: 235 TRFQDRVAQSYGPVKRK---LEHAIKRAVDPNNIL-APGRSGI---DLNN 277


>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus
           (Penicillium simplicissimum) [TaxId: 69488]}
          Length = 287

 Score = 25.9 bits (56), Expect = 5.1
 Identities = 8/43 (18%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 92  LDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAI 134
           +D+         ++ L+     + ++    PN I+ APG+  +
Sbjct: 237 MDQIMETYNWNNSSFLR---FNEVLKNAVDPNGII-APGKSGV 275


>d4bcla_ b.75.1.1 (A:) Bacteriochlorophyll A protein
           {Prosthecochloris aestuarii, strain 2k [TaxId: 1102]}
          Length = 359

 Score = 25.7 bits (56), Expect = 5.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 177 ISLAAFAMVNNFNESEINLRAIITNPNGLKIITA 210
           I L    MV  FN+  ++ +  I  P G KI  A
Sbjct: 286 IPLVHHGMVGKFNDFTVDTQLKIVLPKGYKIRYA 319


>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA,
           N-terminal domain {Bacteria (Listeria monocytogenes)
           [TaxId: 1639]}
          Length = 131

 Score = 24.6 bits (53), Expect = 9.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 212 VNGPIDTPETVGLYAAELLKKKGAIEIIKSYEKK 245
           ++G IDT  +VG Y  E++ ++    +IK  E K
Sbjct: 64  MSGFIDTETSVGYYNLEVISEQATAYVIKINELK 97


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.376 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 886,136
Number of extensions: 41428
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 10
Length of query: 245
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,268,006
Effective search space: 205416972
Effective search space used: 205416972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)