BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11425
(672 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YPN|A Chain A, Hydroxymethylbilane Synthase
pdb|1GTK|A Chain A, Time-Resolved And Static-Ensemble Structural Chemistry Of
Hydroxymethylbilane Synthase
Length = 313
Score = 267 bits (683), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 136/292 (46%), Positives = 188/292 (64%), Gaps = 3/292 (1%)
Query: 375 LAIWQAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGK 434
LA+WQA YV+ K++ +P VE++ + T+GD I + K+ KGLF KELE+A+++ +
Sbjct: 15 LALWQAHYVKDKLMASHPGLVVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENR 74
Query: 435 ADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKV 494
AD+AVHS+KD+P+ P G L I +REDPRDAF+SN+Y SL LP ++VGT+SLRR+
Sbjct: 75 ADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQC 134
Query: 495 LIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILP 554
+ P LII+SLRGN+ TRL+KLD GEY AIILA AGLKRL L+ RIR P LP
Sbjct: 135 QLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLP 194
Query: 555 APGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAAFAMVNN 614
A GQGA+ IE + E+L LNH+ + V AERA++ G C++ + ++A
Sbjct: 195 AVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEGGCQVPIGSYA---E 251
Query: 615 FNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEII 666
+ EI LRA++ P+G +II E G E +G+ AE L GA EI+
Sbjct: 252 LIDGEIWLRALVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAREIL 303
>pdb|1PDA|A Chain A, Structure Of Porphobilinogen Deaminase Reveals A Flexible
Multidomain Polymerase With A Single Catalytic Site
Length = 313
Score = 266 bits (680), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 135/292 (46%), Positives = 188/292 (64%), Gaps = 3/292 (1%)
Query: 375 LAIWQAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGK 434
LA+WQA YV+ K++ +P VE++ + T+GD I + K+ KGLF KELE+A+++ +
Sbjct: 15 LALWQAHYVKDKLMASHPGLVVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENR 74
Query: 435 ADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKV 494
AD+AVHS+KD+P+ P G L I +REDPRDAF+SN+Y SL LP ++VGT+SLRR+
Sbjct: 75 ADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQC 134
Query: 495 LIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILP 554
+ P LII+SLRGN+ TRL+KLD GEY AIILA AGLKRL L+ RIR P LP
Sbjct: 135 QLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLP 194
Query: 555 APGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAAFAMVNN 614
A GQGA+ IE + E+L LNH+ + V AERA++ G+C++ + ++A
Sbjct: 195 AVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEGACQVPIGSYA---E 251
Query: 615 FNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEII 666
+ EI LR ++ P+G +II E G E +G+ AE L GA EI+
Sbjct: 252 LIDGEIWLRGLVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAREIL 303
>pdb|1YPN|A Chain A, Reduced Form Hydroxymethylbilane Synthase (K59q Mutant)
Crystal Structure After 2 Hours In A Flow Cell
Determined By Time-Resolved Laue Diffraction
Length = 313
Score = 266 bits (680), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 135/292 (46%), Positives = 188/292 (64%), Gaps = 3/292 (1%)
Query: 375 LAIWQAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGK 434
LA+WQA YV+ K++ +P VE++ + T+GD I + K+ +GLF KELE+A+++ +
Sbjct: 15 LALWQAHYVKDKLMASHPGLVVELVPMVTRGDVILDTPLAKVGGQGLFVKELEVALLENR 74
Query: 435 ADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKV 494
AD+AVHS+KD+P+ P G L I +REDPRDAF+SN+Y SL LP ++VGT+SLRR+
Sbjct: 75 ADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQC 134
Query: 495 LIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILP 554
+ P LII+SLRGN+ TRL+KLD GEY AIILA AGLKRL L+ RIR P LP
Sbjct: 135 QLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLP 194
Query: 555 APGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAAFAMVNN 614
A GQGA+ IE + E+L LNH+ + V AERA++ G C++ + ++A
Sbjct: 195 AVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEGGCQVPIGSYA---E 251
Query: 615 FNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEII 666
+ EI LRA++ P+G +II E G E +G+ AE L GA EI+
Sbjct: 252 LIDGEIWLRALVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAREIL 303
>pdb|1AH5|A Chain A, Reduced Form Selenomethionine-Labelled Hydroxymethylbilane
Synthase Determined By Mad
Length = 313
Score = 262 bits (670), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 136/292 (46%), Positives = 183/292 (62%), Gaps = 3/292 (1%)
Query: 375 LAIWQAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGK 434
LA+WQA YV+ K+ +P VE++ T+GD I + K+ KGLF KELE+A+++ +
Sbjct: 15 LALWQAHYVKDKLXASHPGLVVELVPXVTRGDVILDTPLAKVGGKGLFVKELEVALLENR 74
Query: 435 ADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKV 494
AD+AVHS KD+P+ P G L I +REDPRDAF+SN+Y SL LP ++VGT+SLRR+
Sbjct: 75 ADIAVHSXKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQC 134
Query: 495 LIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILP 554
+ P LII+SLRGN+ TRL+KLD GEY AIILA AGLKRL L+ RIR P LP
Sbjct: 135 QLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLP 194
Query: 555 APGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAAFAMVNN 614
A GQGA+ IE + E+L LNH+ + V AERA + G C++ + ++A
Sbjct: 195 AVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAXNTRLEGGCQVPIGSYA---E 251
Query: 615 FNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEII 666
+ EI LRA++ P+G +II E G E G+ AE L GA EI+
Sbjct: 252 LIDGEIWLRALVGAPDGSQIIRGERRGAPQDAEQXGISLAEELLNNGAREIL 303
>pdb|3ECR|A Chain A, Structure Of Human Porphobilinogen Deaminase
pdb|3ECR|B Chain B, Structure Of Human Porphobilinogen Deaminase
Length = 364
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/295 (36%), Positives = 168/295 (56%), Gaps = 18/295 (6%)
Query: 374 RLAIWQAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKG 433
+LA Q + V + YP + EI+ ++T GDKI + KI EK LFTKELE A+ K
Sbjct: 32 QLARIQTDSVVATLKASYPGLQFEIIAMSTTGDKILDTALSKIGEKSLFTKELEHALEKN 91
Query: 434 KADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYI---SLSTLPKNAVVGTNSL 490
+ DL VHSLKD+P LP GF + AI KRE+P DA + + +L TLP+ +VVGT+SL
Sbjct: 92 EVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEKSVVGTSSL 151
Query: 491 RRKVLIKSFFPSLIIKSLRGNIDTRLNKLD-KGEYAAIILAAAGLKRLNLQKRIRMLFSP 549
RR ++ FP L +S+RGN++TRL KLD + E++AIILA AGL+R+ R+ + P
Sbjct: 152 RRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQQEFSAIILATAGLQRMGWHNRVGQILHP 211
Query: 550 NQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAAF 609
+ + A GQGA+ +E+ +++++++ L+ + AERA R+ G C + +A
Sbjct: 212 EECMYAVGQGALGVEVRAKDQDILDLVGVLHDPETLLRCIAERAFLRHLEGGCSVPVAVH 271
Query: 610 AMVNNFNESEINLRAIITNPNG-----------LKIITAEVNGPIDTPETVGLYA 653
+ ++ L + + +G + + +GP D P+ VG+ A
Sbjct: 272 TA---MKDGQLYLTGGVWSLDGSDSIQETMQATIHVPAQHEDGPEDDPQLVGITA 323
>pdb|3EQ1|A Chain A, The Crystal Structure Of Human Porphobilinogen Deaminase
At 2.8a Resolution
pdb|3EQ1|B Chain B, The Crystal Structure Of Human Porphobilinogen Deaminase
At 2.8a Resolution
Length = 361
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/295 (36%), Positives = 168/295 (56%), Gaps = 18/295 (6%)
Query: 374 RLAIWQAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKG 433
+LA Q + V + YP + EI+ ++T GDKI + KI EK LFTKELE A+ K
Sbjct: 29 QLARIQTDSVVATLKASYPGLQFEIIAMSTTGDKILDTALSKIGEKSLFTKELEHALEKN 88
Query: 434 KADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYI---SLSTLPKNAVVGTNSL 490
+ DL VHSLKD+P LP GF + AI KRE+P DA + + +L TLP+ +VVGT+SL
Sbjct: 89 EVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEKSVVGTSSL 148
Query: 491 RRKVLIKSFFPSLIIKSLRGNIDTRLNKLD-KGEYAAIILAAAGLKRLNLQKRIRMLFSP 549
RR ++ FP L +S++GN++TRL KLD + E++AIILA AGL+R+ R+ + P
Sbjct: 149 RRAAQLQRKFPHLEFRSIQGNLNTRLRKLDEQQEFSAIILATAGLQRMGWHNRVGQILHP 208
Query: 550 NQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAAF 609
+ + A GQGA+ +E+ +++++++ L+ + AERA R+ G C + +A
Sbjct: 209 EECMYAVGQGALGVEVRAKDQDILDLVGVLHDPETLLRCIAERAFLRHLEGGCSVPVAVH 268
Query: 610 AMVNNFNESEINLRAIITNPNG-----------LKIITAEVNGPIDTPETVGLYA 653
+ ++ L + + +G + + +GP D P+ VG+ A
Sbjct: 269 TA---MKDGQLYLTGGVWSLDGSDSIQETMQATIHVPAQHEDGPEDDPQLVGITA 320
>pdb|4HTG|A Chain A, Porphobilinogen Deaminase From Arabidopsis Thaliana
Length = 320
Score = 186 bits (472), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 109/273 (39%), Positives = 156/273 (57%), Gaps = 7/273 (2%)
Query: 375 LAIWQA----EYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAI 430
LA+ QA E ++KK EL + I I T GDKI + I KGLFTKE++ A+
Sbjct: 22 LALAQAYETREKLKKKHPELVEDGAIHIEIIKTTGDKILSQPLADIGGKGLFTKEIDEAL 81
Query: 431 IKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSL 490
I G D+AVHS+KD+P LP IL L RED RDAFI +L+ LP +VVGT SL
Sbjct: 82 INGHIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFICLTAATLAELPAGSVVGTASL 141
Query: 491 RRKVLIKSFFPSLII-KSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSP 549
RRK I +P+L + ++ RGN+ TRL+KL G+ A +LA AGLKRL++ + + + S
Sbjct: 142 RRKSQILHKYPALHVEENFRGNVQTRLSKLQGGKVQATLLALAGLKRLSMTENVASILSL 201
Query: 550 NQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAAF 609
+++LPA QGAI I + ++ L LNH + + ERA +GSC+ +A +
Sbjct: 202 DEMLPAVAQGAIGIACRTDDDKMATYLASLNHEETRLAISCERAFLETLDGSCRTPIAGY 261
Query: 610 AMVNNFNESEINLRAIITNPNGLKIITAEVNGP 642
A + E R ++ +P+G K++ GP
Sbjct: 262 A--SKDEEGNCIFRGLVASPDGTKVLETSRKGP 292
>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella Burnetii
Length = 205
Score = 183 bits (465), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 130/183 (71%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKL 186
N+FIISAPSGAGK++LV L+K +IK+SIS TTRP RPG++ G +Y+F + F+
Sbjct: 7 ANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAX 66
Query: 187 QKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILP 246
K G FLE A ++ YGT ++R++K+ D+LLEID+QGA+QI++ FP A+ IFILP
Sbjct: 67 VKEGAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILP 126
Query: 247 PSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLKAIINA 306
PS+++L+ERL KR QD +I +R+ A +E ++ +FDY+++N+ F +A+ L II+A
Sbjct: 127 PSIEALRERLIKRRQDDTAIIEQRLALAREEXAHYKEFDYLVVNDNFDQAVQNLIHIISA 186
Query: 307 NRC 309
R
Sbjct: 187 ERL 189
>pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2AN9|B Chain B, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2ANB|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gmp
pdb|2ANC|A Chain A, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|B Chain B, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|C Chain C, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|D Chain D, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|E Chain E, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|F Chain F, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2F3R|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3R|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3T|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|C Chain C, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|D Chain D, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|E Chain E, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|F Chain F, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
Length = 207
Score = 182 bits (462), Expect = 6e-46, Method: Composition-based stats.
Identities = 92/189 (48%), Positives = 128/189 (67%), Gaps = 2/189 (1%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKD--HKIKLSISTTTRPMRPGEKNGREYYFTNIDNFK 184
G ++I+SAPSGAGKS+L+ LLK + ++S+S TTR RPGE +G Y+F N D FK
Sbjct: 4 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFK 63
Query: 185 KLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFI 244
++ FLE AEV GN+YGTS I + + + VD+ L+ID+QGA+QI++K P+A IFI
Sbjct: 64 EMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFI 123
Query: 245 LPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLKAII 304
LPPS L RL RGQD +VI++R+ A E+S+ ++DY+I+N+ F AL LK II
Sbjct: 124 LPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDDFDTALTDLKTII 183
Query: 305 NANRCFMAR 313
A R M+R
Sbjct: 184 RAERLRMSR 192
>pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
pdb|1S96|B Chain B, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
Length = 219
Score = 175 bits (443), Expect = 8e-44, Method: Composition-based stats.
Identities = 91/189 (48%), Positives = 124/189 (65%), Gaps = 2/189 (1%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKD--HKIKLSISTTTRPMRPGEKNGREYYFTNIDNFK 184
G ++I+SAPSGAGKS+L+ LLK + ++S+S TTR RPGE +G Y+F N D FK
Sbjct: 16 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFK 75
Query: 185 KLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFI 244
+ FLE AEV GN+YGTS I + + + VD+ L+ID+QGA+QI++K P+A IFI
Sbjct: 76 EXISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKXPHARSIFI 135
Query: 245 LPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLKAII 304
LPPS L RL RGQD +VI++R A E S+ ++DY+I+N+ F AL LK II
Sbjct: 136 LPPSKIELDRRLRGRGQDSEEVIAKRXAQAVAEXSHYAEYDYLIVNDDFDTALTDLKTII 195
Query: 305 NANRCFMAR 313
A R +R
Sbjct: 196 RAERLRXSR 204
>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium
Tuberculosis (Rv1389)
Length = 228
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 112/202 (55%), Gaps = 2/202 (0%)
Query: 105 MATLSLEAQQRHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRP 164
MA E + + G + ++S PS GKST+V L ++ + S+S TTR
Sbjct: 1 MAVSVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRA 60
Query: 165 MRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFY--GTSFFPIVREIKSNVDILL 222
RPGE +G +Y+F + F++L G+ LEWAE+HG + GT P+ + V +L+
Sbjct: 61 PRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLI 120
Query: 223 EIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYAN 282
E+D GA+ IKK P A+ +F+ PPS L+ RL RG + DVI RR+ +A E++
Sbjct: 121 EVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQG 180
Query: 283 KFDYIIINNKFSKALLQLKAII 304
FD +++N + A +L +++
Sbjct: 181 DFDKVVVNRRLESACAELVSLL 202
>pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From
Mycobacterium Tuberculosis (Rv1389)
Length = 228
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 112/202 (55%), Gaps = 2/202 (0%)
Query: 105 MATLSLEAQQRHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRP 164
MA E + + G + ++S PS GKST+V L ++ + S+S TTR
Sbjct: 1 MAVSVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRC 60
Query: 165 MRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFY--GTSFFPIVREIKSNVDILL 222
RPGE +G +Y+F + F++L G+ LEWAE+HG + GT P+ + V +L+
Sbjct: 61 PRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLI 120
Query: 223 EIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYAN 282
E+D GA+ IKK P A+ +F+ PPS L+ RL RG + DVI RR+ +A E++
Sbjct: 121 EVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGCETADVIQRRLDTARIELAAQG 180
Query: 283 KFDYIIINNKFSKALLQLKAII 304
FD +++N + A +L +++
Sbjct: 181 DFDKVVVNRRLESACAELVSLL 202
>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium
Tuberculosis Guanylate Kinase
pdb|1ZNX|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gmp
pdb|1ZNY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gdp
pdb|1ZNZ|A Chain A, Crystal Structure Of The Reduced Form Of Mycobacterium
Tuberculosis Guanylate Kinase In Complex With Gdp
Length = 207
Score = 141 bits (355), Expect = 1e-33, Method: Composition-based stats.
Identities = 67/182 (36%), Positives = 108/182 (59%), Gaps = 2/182 (1%)
Query: 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFK 184
+ G + ++S PS GKST+V L ++ + S+S TTR RPGE +G +Y+F + F+
Sbjct: 18 AVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQ 77
Query: 185 KLQKSGKFLEWAEVHGNFY--GTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGI 242
+L G+ LEWAE+HG + GT P+ + V +L+E+D GA+ IKK P A+ +
Sbjct: 78 QLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTV 137
Query: 243 FILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLKA 302
F+ PPS L+ RL RG + DVI RR+ +A E++ FD +++N + A +L +
Sbjct: 138 FLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVS 197
Query: 303 II 304
++
Sbjct: 198 LL 199
>pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|B Chain B, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|C Chain C, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|D Chain D, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
Length = 207
Score = 140 bits (353), Expect = 2e-33, Method: Composition-based stats.
Identities = 75/189 (39%), Positives = 114/189 (60%), Gaps = 1/189 (0%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKK-DHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKK 185
G + ++S PSG GK T+ + + K SIS TTR MR GE +G +Y+F D F+
Sbjct: 6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEA 65
Query: 186 LQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFIL 245
L K +F+E+AE GN+YGT + + D+ LEI+ +GAKQ++KKFP+A+ IF+
Sbjct: 66 LIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLA 125
Query: 246 PPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLKAIIN 305
PPSL+ L+ERL RG + + I RI A KE+ N +DY+++N++ A +++ I+
Sbjct: 126 PPSLEHLRERLVGRGTESDEKIQSRINEARKEVEMMNLYDYVVVNDEVELAKNRIQCIVE 185
Query: 306 ANRCFMARV 314
A RV
Sbjct: 186 AEHLKRERV 194
>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
pdb|3LNC|B Chain B, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
Length = 231
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 119/206 (57%), Gaps = 6/206 (2%)
Query: 105 MATLSLEAQQRHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKD-HKIKLSISTTTR 163
M TL + Q + KS G I ++S+PSG GK+T+ N+LL+K + I S+S TTR
Sbjct: 9 MGTLEAQTQGPGSM----LKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTR 64
Query: 164 PMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLE 223
R GEK G++YYF + + F +L +G+ +E AEV GNFYG + + V LL
Sbjct: 65 AARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLV 124
Query: 224 IDFQGA-KQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYAN 282
ID+QGA K ++ + + IFI+PPS++ L+ RL R D +V+ R+ A EIS+
Sbjct: 125 IDWQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCE 184
Query: 283 KFDYIIINNKFSKALLQLKAIINANR 308
+DY+I+N + ++ I+ A +
Sbjct: 185 AYDYVIVNEDIEETADRISNILRAEQ 210
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 113/183 (61%), Gaps = 6/183 (3%)
Query: 131 IISAPSGAGKSTLVNELLKK-DHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKS 189
+IS PSG GKSTL+ +L + S+S+TTR R GE NG++Y F ++D FK + K+
Sbjct: 6 VISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKN 65
Query: 190 GKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFP--NAIGIFILPP 247
+F+EWA+ GN+YG++ + + KS +L+ID QG K + K P NA +FI PP
Sbjct: 66 NEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSV-KAIPELNARFLFIAPP 124
Query: 248 SLDSLKERLYKRGQDKYDVISRRILSANKEISYA--NKFDYIIINNKFSKALLQLKAIIN 305
S++ LK+RL RG + + I++R+ +A E++YA D +I+N+ KA +LK I
Sbjct: 125 SVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDKAYKELKDFIF 184
Query: 306 ANR 308
A +
Sbjct: 185 AEK 187
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 113/183 (61%), Gaps = 6/183 (3%)
Query: 131 IISAPSGAGKSTLVNELLKK-DHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKS 189
+IS PSG GKSTL+ +L + S+S+TTR R GE NG++Y F ++D FK + K+
Sbjct: 5 VISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKN 64
Query: 190 GKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFP--NAIGIFILPP 247
+F+EWA+ GN+YG++ + + KS +L+ID QG K + K P NA +FI PP
Sbjct: 65 NEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSV-KAIPELNARFLFIAPP 123
Query: 248 SLDSLKERLYKRGQDKYDVISRRILSANKEISYA--NKFDYIIINNKFSKALLQLKAIIN 305
S++ LK+RL RG + + I++R+ +A E++YA D +I+N+ KA +LK I
Sbjct: 124 SVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDKAYKELKDFIF 183
Query: 306 ANR 308
A +
Sbjct: 184 AEK 186
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 112/183 (61%), Gaps = 6/183 (3%)
Query: 131 IISAPSGAGKSTLVNELLKK-DHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKS 189
+IS PSG GKSTL+ +L + S+ +TTR R GE NG++Y F ++D FK + K+
Sbjct: 21 VISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTPRAGEVNGKDYNFVSVDEFKSMIKN 80
Query: 190 GKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFP--NAIGIFILPP 247
+F+EWA+ GN+YG++ + + KS +L+ID QG K + K P NA +FI PP
Sbjct: 81 NEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSV-KAIPELNARFLFIAPP 139
Query: 248 SLDSLKERLYKRGQDKYDVISRRILSANKEISYA--NKFDYIIINNKFSKALLQLKAIIN 305
S++ LK+RL RG + + I++R+ +A E++YA D +I+N+ KA +LK I
Sbjct: 140 SVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDKAYKELKDFIF 199
Query: 306 ANR 308
A +
Sbjct: 200 AEK 202
>pdb|3TAU|A Chain A, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
pdb|3TAU|B Chain B, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
Length = 208
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 111/190 (58%), Gaps = 3/190 (1%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKL--SISTTTRPMRPGEKNGREYYFTNIDNFK 184
G + ++S PSG GK T V E + KD + SIS TTR R GE++G +YYF + + F+
Sbjct: 8 GLLIVLSGPSGVGKGT-VREAVFKDPETSFDYSISXTTRLPREGEQDGVDYYFRSREVFE 66
Query: 185 KLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFI 244
+ K GK LE+AE GN+YGT + ++ + VDI LEI+ QGA Q++K P I IF+
Sbjct: 67 QAIKDGKXLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAXQVRKAXPEGIFIFL 126
Query: 245 LPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLKAII 304
PP L LK R+ RG + +V+ R +A KEI +DY ++N+ + A+ ++K I+
Sbjct: 127 TPPDLSELKNRIIGRGTESXEVVEERXETAKKEIEXXASYDYAVVNDVVANAVQKIKGIV 186
Query: 305 NANRCFMARV 314
RV
Sbjct: 187 ETEHLKTERV 196
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 110/180 (61%), Gaps = 6/180 (3%)
Query: 131 IISAPSGAGKSTLVNELLKKDHKI-KLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKS 189
++S PSGAGKSTL+ +L ++ I S+S TTR RPGE++G++YYF + ++ +
Sbjct: 8 VLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAA 67
Query: 190 GKFLEWAEVHGNFYGTSFFPIVREIKS-NVDILLEIDFQGAKQIKKKFPNAIGIFILPPS 248
G F+E AE GN YGTS VR +++ N +L++D QG + IKK I IF+ PPS
Sbjct: 68 GDFIEHAEFSGNLYGTS-KEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPS 126
Query: 249 LDSLKERLYKRGQDKYDVISRRILSANKEISYANK---FDYIIINNKFSKALLQLKAIIN 305
LD L++RL R + + +++R+ +A ++ + + FD +IIN+ KA LK ++
Sbjct: 127 LDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYATLKQALS 186
>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase
Length = 204
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 102/187 (54%), Gaps = 21/187 (11%)
Query: 131 IISAPSGAGKSTLVNELLKK-DHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKS 189
++ PSG GK TL+ ++L + + + SIS TTR R E NG +YYF + D+F++ K
Sbjct: 16 VVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKE 75
Query: 190 GKFLEWAEVHGNFYGTSFFPIVREIKSNVDI--------LLEIDFQGAKQIK--KKFPNA 239
G+FLE+ + NFYGT +KS D+ L E + G KQ+K K +
Sbjct: 76 GQFLEFDKYANNFYGT--------LKSEYDLAVGEGKICLFEXNINGVKQLKESKHIQDG 127
Query: 240 IGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANK--FDYIIINNKFSKAL 297
I IF+ PPS+D L RL R +K + I++R +E A+K F+Y I+N+ ++
Sbjct: 128 IYIFVKPPSIDILLGRLKNRNTEKPEEINKRXQELTREXDEADKVGFNYFIVNDDLARTY 187
Query: 298 LQLKAII 304
+L+ +
Sbjct: 188 AELREYL 194
>pdb|1Z6G|A Chain A, Crystal Structure Of Guanylate Kinase From Plasmodium
Falciparum
Length = 218
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 96/187 (51%), Gaps = 7/187 (3%)
Query: 125 SFGNIF--IISAPSGAGKSTLVNELLKK-DHKIKLSISTTTRPMRPGEKNGREYYFTNID 181
S NI+ +I PSG GK TL+ +LL + + S+S TTR R EK G +YYF +
Sbjct: 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKT 78
Query: 182 NFKKLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKK--KFPNA 239
F+ K+ FLE+ NFYGT + + N L E++ G KQ+KK NA
Sbjct: 79 IFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNA 138
Query: 240 IGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYAN--KFDYIIINNKFSKAL 297
+ IFI PPS D L RL R + + I +R+ N E+ AN F+ IIN+ +
Sbjct: 139 LYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTY 198
Query: 298 LQLKAII 304
QLK +
Sbjct: 199 QQLKNYL 205
>pdb|1TJL|A Chain A, Crystal Structure Of Transcription Factor Dksa From E.
Coli
pdb|1TJL|B Chain B, Crystal Structure Of Transcription Factor Dksa From E.
Coli
pdb|1TJL|C Chain C, Crystal Structure Of Transcription Factor Dksa From E.
Coli
pdb|1TJL|D Chain D, Crystal Structure Of Transcription Factor Dksa From E.
Coli
pdb|1TJL|E Chain E, Crystal Structure Of Transcription Factor Dksa From E.
Coli
pdb|1TJL|F Chain F, Crystal Structure Of Transcription Factor Dksa From E.
Coli
pdb|1TJL|G Chain G, Crystal Structure Of Transcription Factor Dksa From E.
Coli
pdb|1TJL|H Chain H, Crystal Structure Of Transcription Factor Dksa From E.
Coli
pdb|1TJL|I Chain I, Crystal Structure Of Transcription Factor Dksa From E.
Coli
pdb|1TJL|J Chain J, Crystal Structure Of Transcription Factor Dksa From E.
Coli
Length = 151
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 78/121 (64%), Gaps = 1/121 (0%)
Query: 4 KDYMNEEQLAFFKFRLKKLENDLLKNIVKTTEYLR-ETILVPDPADRATIEEENTLELRA 62
++YMNE QLA F+ L+ N L + +T +++ E PDP DRA EEE +LELR
Sbjct: 29 EEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRN 88
Query: 63 RDRERKLLIKIQQSIINIDKKEYGWCKDTGEPIGILRLLAKPMATLSLEAQQRHELKKKS 122
RDRERKL+ KI++++ ++ +++G+C+ G IGI RL A+P A L ++ + E+++K
Sbjct: 89 RDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQ 148
Query: 123 F 123
Sbjct: 149 M 149
>pdb|4IJJ|A Chain A, Structure Of Transcription Factor Dksa2 From Pseudomonas
Aeruginosa
pdb|4IJJ|B Chain B, Structure Of Transcription Factor Dksa2 From Pseudomonas
Aeruginosa
pdb|4IJJ|C Chain C, Structure Of Transcription Factor Dksa2 From Pseudomonas
Aeruginosa
Length = 136
Score = 90.5 bits (223), Expect = 3e-18, Method: Composition-based stats.
Identities = 47/119 (39%), Positives = 74/119 (62%)
Query: 6 YMNEEQLAFFKFRLKKLENDLLKNIVKTTEYLRETILVPDPADRATIEEENTLELRARDR 65
YM+E Q FF+ L + +L I LR+ D AD A+ EE+ +LR +R
Sbjct: 16 YMDEAQQDFFRDLLLRQRQELQARIEGEFGELRDLERPSDEADLASREEQRQWQLRLLER 75
Query: 66 ERKLLIKIQQSIINIDKKEYGWCKDTGEPIGILRLLAKPMATLSLEAQQRHELKKKSFK 124
E+KLL KI +++ + + +YGWC++TGEPIG+ RLL +P ATL +EA++R E +++ +
Sbjct: 76 EKKLLDKIDEALERLARGDYGWCQETGEPIGLRRLLLRPTATLCIEAKERQEKRERHVR 134
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 11/172 (6%)
Query: 131 IISAPSGAGKSTLVNELLKKD-HKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKS 189
++ SG G+S + N LL ++ K + TTRP R E++G+EY+F + + + +
Sbjct: 23 VLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISA 82
Query: 190 GKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSL 249
+FLE+ GN +GT F + + K N +L+I+ Q K ++ + +FI P
Sbjct: 83 NEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQ 142
Query: 250 DSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLK 301
+ E L + +D + S+ YA+ FD ++NN + L +L+
Sbjct: 143 GTQTEALQQLQKDSEAIRSQ----------YAHYFDLSLVNNGVDETLKKLQ 184
>pdb|3LU0|E Chain E, Molecular Model Of Escherichia Coli Core Rna Polymerase
pdb|4IGC|E Chain E, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
pdb|4IGC|J Chain J, X-ray Crystal Structure Of Escherichia Coli Sigma70
Holoenzyme
Length = 91
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 33/63 (52%), Positives = 42/63 (66%)
Query: 311 MARVTIEDGLKKINNRFKLTLCAVYRARQLLKGHTKKIIGCDNDKVTVIALREISHGKIG 370
MARVT++D ++KI NRF L L A RARQ+ G ++ +NDK TVIALREI G I
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60
Query: 371 VEI 373
+I
Sbjct: 61 NQI 63
>pdb|3IYD|E Chain E, Three-Dimensional Em Structure Of An Intact
Activator-Dependent Transcription Initiation Complex
Length = 90
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/62 (51%), Positives = 41/62 (66%)
Query: 312 ARVTIEDGLKKINNRFKLTLCAVYRARQLLKGHTKKIIGCDNDKVTVIALREISHGKIGV 371
ARVT++D ++KI NRF L L A RARQ+ G ++ +NDK TVIALREI G I
Sbjct: 1 ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINN 60
Query: 372 EI 373
+I
Sbjct: 61 QI 62
>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of
Human Cask
Length = 180
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 12/178 (6%)
Query: 130 FIISAPSGAGKSTLVNELLKKD-HKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQK 188
++ G G+ + N L+ K + I TTRP + E+NG+ YYF + D +
Sbjct: 8 LVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDIS 67
Query: 189 SGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPS 248
+ ++LE+ YGT I + + + +L+++ Q K ++ +FI P+
Sbjct: 68 NNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPT 127
Query: 249 LDS--LKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLKAII 304
+ ++ +R Q + D++ R +YA+ FD IINN+ + + L+ +
Sbjct: 128 ITPGLNEDESLQRLQKESDILQR---------TYAHYFDLTIINNEIDETIRHLEEAV 176
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 153 KIKLSISTTTRPMRPGEKNGREYYF-TNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIV 211
K + TTRP R E +GR+Y+F ++ + +K ++ KF+E + + + YGTS +
Sbjct: 135 KFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVR 194
Query: 212 REIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKE 254
+ +L++ ++++ + I IFI P SL+++ E
Sbjct: 195 EVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE 237
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 153 KIKLSISTTTRPMRPGEKNGREYYF-TNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIV 211
K + TTRP R E +GR+Y+F ++ + +K ++ KF+E + + + YGTS +
Sbjct: 555 KFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYGTSVQSVR 614
Query: 212 REIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKE 254
+ +L++ ++++ + I IFI P SL+++ E
Sbjct: 615 EVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE 657
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 153 KIKLSISTTTRPMRPGEKNGREYYF-TNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIV 211
K + TTRP R E +GR+Y+F ++ + +K ++ KF+E + + + YGTS +
Sbjct: 129 KFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVR 188
Query: 212 REIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKE 254
+ +L++ ++++ + I IFI P SL+++ E
Sbjct: 189 EVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE 231
>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold
Proteins As Specific Phospho-Protein Binding Modules
Length = 296
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 11/157 (7%)
Query: 153 KIKLSISTTTRPMRPGEKNGREYYF-TNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIV 211
K + TTRP R E +GR+Y+F T+ + +K + KF+E + + + YGTS +
Sbjct: 130 KFGSCVPHTTRPKRDYEVDGRDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYGTSVQSVR 189
Query: 212 REIKSNVDILLEIDFQGAK--QIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISR 269
+ +L++ K QI + +P I IFI P S++++ E + KR D+ +R
Sbjct: 190 AVAEKGKHCILDVSGNAIKRLQIAQLYP--ISIFIKPKSMENIME-MNKRLTDEQ---AR 243
Query: 270 RIL--SANKEISYANKFDYIIINNKFSKALLQLKAII 304
+ + E + F I+ + Q+K II
Sbjct: 244 KTFERAVRLEQEFTEHFTAIVQGDTLEDIYNQVKQII 280
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 153 KIKLSISTTTRPMRPGEKNGREYYF-TNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIV 211
K + TTRP R E +GR+Y+F ++ + ++ ++ F+E + + N YGTS +
Sbjct: 124 KFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVASVR 183
Query: 212 REIKSNVDILLEIDFQGAK--QIKKKFPNAIGIFILPPSLDSLKE 254
+ +L++ K Q+ + +P + +FI P S+DS+ E
Sbjct: 184 EVAEKGKHCILDVSGNAIKRLQVAQLYP--VAVFIKPKSVDSVME 226
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 108 LSLEAQQRHELKKKSFK-SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMR 166
L + + H LK S K G ++ SG+GKSTLVNE+L K KL + +
Sbjct: 630 LEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKA----K 685
Query: 167 PGE 169
PGE
Sbjct: 686 PGE 688
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 108 LSLEAQQRHELKKKSFK-SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMR 166
L + + H LK S K G ++ SG+GKSTLVNE+L K KL + +
Sbjct: 328 LEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKA----K 383
Query: 167 PGE 169
PGE
Sbjct: 384 PGE 386
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 108 LSLEAQQRHELKKKSFK-SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMR 166
L + + H LK S K G ++ SG+GKSTLVNE+L K KL + +
Sbjct: 630 LEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKA----K 685
Query: 167 PGE 169
PGE
Sbjct: 686 PGE 688
>pdb|3ADR|A Chain A, The First Crystal Structure Of An Archaeal
Metallo-Beta-Lactamase Superfamily Protein; St1585 From
Sulfolobus Tokodaii
pdb|3ADR|B Chain B, The First Crystal Structure Of An Archaeal
Metallo-Beta-Lactamase Superfamily Protein; St1585 From
Sulfolobus Tokodaii
Length = 261
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 277 EISYANKFDYIIINN------KFSKALLQL-KAIINANRCFMARVTIEDGLKKINNRFKL 329
+ S+ +K DYI++ + LLQ+ KA + F +T EDGLKK+N +
Sbjct: 44 DFSFLDKLDYIVLTHLHIDHIGLLPELLQVYKAKVLVKSGFKKYLTSEDGLKKLNESAEK 103
Query: 330 TLCAVYRARQLLKGHTKKIIGCDNDKV 356
L +Y + G KK+ D DKV
Sbjct: 104 VLGDLY---YVYGGLEKKL---DQDKV 124
>pdb|1IKO|P Chain P, Crystal Structure Of The Murine Ephrin-B2 Ectodomain
Length = 178
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 35 EYLRETILVPDPADRATIEEENT--LELRARDRERKLLIKIQQSIINIDKKEYGWCKD 90
EY + ++ D ADR TI++ENT L D++ K IK Q+ N+ E+ KD
Sbjct: 48 EYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKD 105
>pdb|1KGY|E Chain E, Crystal Structure Of The Ephb2-Ephrinb2 Complex
pdb|1KGY|F Chain F, Crystal Structure Of The Ephb2-Ephrinb2 Complex
pdb|1KGY|G Chain G, Crystal Structure Of The Ephb2-Ephrinb2 Complex
pdb|1KGY|H Chain H, Crystal Structure Of The Ephb2-Ephrinb2 Complex
Length = 138
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 35 EYLRETILVPDPADRATIEEENT--LELRARDRERKLLIKIQQSIINIDKKEYGWCKD 90
EY + ++ D ADR TI++ENT L D++ K IK Q+ N+ E+ KD
Sbjct: 47 EYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKD 104
>pdb|3GXU|B Chain B, Crystal Structure Of Eph Receptor And Ephrin Complex
Length = 143
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 35 EYLRETILVPDPADRATIEEENT--LELRARDRERKLLIKIQQSIINIDKKEYGWCKD 90
EY + ++ D ADR TI++ENT L D++ K IK Q+ N+ E+ KD
Sbjct: 48 EYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNKD 105
>pdb|2WO2|B Chain B, Crystal Structure Of The Epha4-Ephrinb2 Complex
Length = 153
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 35 EYLRETILVPDPADRATIEEENT--LELRARDRERKLLIKIQQSIINIDKKEYGWCKD 90
EY + ++ D ADR TI++ENT L D++ K IK Q+ N+ E+ KD
Sbjct: 51 EYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNKD 108
>pdb|2VSM|B Chain B, Nipah Virus Attachment Glycoprotein In Complex With Human
Cell Surface Receptor Ephrinb2
Length = 140
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 35 EYLRETILVPDPADRATIEEENT--LELRARDRERKLLIKIQQSIINIDKKEYGWCKD 90
EY + ++ D ADR TI++ENT L D++ K IK Q+ N+ E+ KD
Sbjct: 47 EYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNKD 104
>pdb|2VSK|B Chain B, Hendra Virus Attachment Glycoprotein In Complex With Human
Cell Surface Receptor Ephrinb2
pdb|2VSK|D Chain D, Hendra Virus Attachment Glycoprotein In Complex With Human
Cell Surface Receptor Ephrinb2
Length = 138
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 35 EYLRETILVPDPADRATIEEENT--LELRARDRERKLLIKIQQSIINIDKKEYGWCKD 90
EY + ++ D ADR TI++ENT L D++ K IK Q+ N+ E+ KD
Sbjct: 47 EYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNKD 104
>pdb|2HLE|B Chain B, Structural And Biophysical Characterization Of The
Ephb4-ephrinb2 Protein Protein Interaction And Receptor
Specificity
Length = 138
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 35 EYLRETILVPDPADRATIEEENT--LELRARDRERKLLIKIQQSIINIDKKEYGWCKD 90
EY + ++ D ADR TI++ENT L D++ K IK Q+ N+ E+ KD
Sbjct: 47 EYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKD 104
>pdb|2I85|A Chain A, Nmr Solution Structure Of Human Ephrinb2 Ectodomain
Length = 142
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 35 EYLRETILVPDPADRATIEEENT--LELRARDRERKLLIKIQQSIINIDKKEYGWCKD 90
EY + ++ D ADR TI++ENT L D++ K IK Q+ N+ E+ KD
Sbjct: 50 EYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNKD 107
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTR 163
+ I+ P+ GKSTL+N LL +D I I TTR
Sbjct: 246 MVIVGKPN-VGKSTLLNRLLNEDRAIVTDIPGTTR 279
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 41/84 (48%)
Query: 341 LKGHTKKIIGCDNDKVTVIALREISHGKIGVEIRLAIWQAEYVRKKIIELYPWCKVEILG 400
LK ++I +N ++ + L E + I ++I + + V KK+ E W ++ ++
Sbjct: 22 LKKEGYEVIEAENGQIALEKLSEFTPDLIVLDIMMPVMDGFTVLKKLQEKEEWKRIPVIV 81
Query: 401 ITTKGDKIFEKVPLKINEKGLFTK 424
+T KG + E + L + + + K
Sbjct: 82 LTAKGGEEDESLALSLGARKVMRK 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,006,964
Number of Sequences: 62578
Number of extensions: 802664
Number of successful extensions: 2541
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2443
Number of HSP's gapped (non-prelim): 81
length of query: 672
length of database: 14,973,337
effective HSP length: 105
effective length of query: 567
effective length of database: 8,402,647
effective search space: 4764300849
effective search space used: 4764300849
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)