Query psy11425
Match_columns 672
No_of_seqs 545 out of 3467
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 18:06:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0181 HemC Porphobilinogen d 100.0 4E-104 9E-109 808.8 31.5 298 371-670 9-306 (307)
2 TIGR00212 hemC porphobilinogen 100.0 3E-100 6E-105 787.6 32.6 289 369-661 3-292 (292)
3 cd00494 HMBS Hydroxymethylbila 100.0 4.3E-99 9E-104 778.8 32.8 287 369-658 3-291 (292)
4 PLN02691 porphobilinogen deami 100.0 1.8E-98 4E-103 785.5 33.8 297 369-668 46-350 (351)
5 PRK00072 hemC porphobilinogen 100.0 2.1E-98 5E-103 774.7 32.4 287 369-658 7-294 (295)
6 KOG2892|consensus 100.0 5.1E-85 1.1E-89 648.4 14.9 295 371-668 13-314 (320)
7 PF01379 Porphobil_deam: Porph 100.0 1.1E-79 2.5E-84 608.9 19.8 209 369-577 4-215 (215)
8 PRK01066 porphobilinogen deami 100.0 5.2E-79 1.1E-83 604.8 22.0 211 368-583 19-230 (231)
9 COG0194 Gmk Guanylate kinase [ 100.0 2.3E-42 4.9E-47 332.6 19.4 185 126-311 3-187 (191)
10 PRK14737 gmk guanylate kinase; 100.0 1.7E-38 3.7E-43 313.9 19.9 182 126-307 3-185 (186)
11 smart00072 GuKc Guanylate kina 100.0 1.4E-34 2.9E-39 285.7 20.5 181 127-307 2-183 (184)
12 PF00625 Guanylate_kin: Guanyl 100.0 3E-35 6.4E-40 290.0 15.5 181 126-306 1-182 (183)
13 PLN02772 guanylate kinase 100.0 8.3E-33 1.8E-37 296.4 20.2 185 126-310 134-322 (398)
14 PRK14738 gmk guanylate kinase; 100.0 1.5E-30 3.2E-35 261.6 20.5 188 124-311 10-199 (206)
15 KOG0609|consensus 100.0 3.8E-30 8.2E-35 278.3 18.3 202 115-316 328-538 (542)
16 TIGR03263 guanyl_kin guanylate 100.0 1.6E-27 3.4E-32 233.5 19.0 179 127-305 1-179 (180)
17 PRK00300 gmk guanylate kinase; 99.9 4.7E-27 1E-31 235.1 19.2 185 125-309 3-187 (205)
18 KOG0707|consensus 99.9 1.5E-27 3.2E-32 236.9 14.5 185 124-308 33-223 (231)
19 PRK10778 dksA RNA polymerase-b 99.9 2.7E-26 5.8E-31 217.5 12.3 123 1-123 26-149 (151)
20 COG1734 DksA DnaK suppressor p 99.9 2.8E-25 6.2E-30 201.4 12.1 117 7-123 1-118 (120)
21 TIGR02420 dksA RNA polymerase- 99.9 4.4E-25 9.6E-30 199.7 12.2 109 7-115 1-110 (110)
22 cd00071 GMPK Guanosine monopho 99.9 9.7E-24 2.1E-28 198.7 12.9 135 129-300 1-136 (137)
23 TIGR02890 spore_yteA sporulati 99.9 1.7E-22 3.6E-27 193.3 12.4 109 10-118 1-119 (159)
24 PRK10078 ribose 1,5-bisphospho 99.9 3E-20 6.6E-25 183.7 19.8 173 126-307 1-177 (186)
25 COG3709 Uncharacterized compon 99.8 1.8E-19 3.9E-24 169.1 17.8 177 125-308 3-184 (192)
26 TIGR02322 phosphon_PhnN phosph 99.8 2.2E-19 4.8E-24 175.9 19.2 172 128-306 2-178 (179)
27 PRK08356 hypothetical protein; 99.8 7.9E-18 1.7E-22 167.7 17.9 173 128-306 6-192 (195)
28 PF03900 Porphobil_deamC: Porp 99.7 2.2E-17 4.7E-22 139.0 8.1 72 585-659 1-74 (74)
29 TIGR00690 rpoZ DNA-directed RN 99.7 5.8E-17 1.3E-21 129.8 4.2 59 312-370 1-59 (59)
30 PHA00080 DksA-like zinc finger 99.5 1.4E-14 3E-19 120.5 5.9 64 44-118 1-64 (72)
31 PRK00392 rpoZ DNA-directed RNA 99.4 5.6E-14 1.2E-18 116.7 4.2 59 311-370 1-59 (69)
32 TIGR02419 C4_traR_proteo phage 99.4 9.1E-14 2E-18 112.8 5.3 63 45-117 1-63 (63)
33 KOG0708|consensus 99.4 1.1E-12 2.4E-17 138.5 13.7 181 115-315 175-357 (359)
34 PRK13715 conjugal transfer pro 99.4 1.3E-13 2.7E-18 115.0 5.2 69 44-123 2-72 (73)
35 PRK00081 coaE dephospho-CoA ki 99.4 1.1E-12 2.3E-17 130.8 13.0 176 127-306 2-193 (194)
36 PRK11019 hypothetical protein; 99.4 1.7E-13 3.7E-18 117.6 5.6 54 71-124 21-75 (88)
37 PRK14731 coaE dephospho-CoA ki 99.4 3.7E-12 8.1E-17 128.4 11.1 67 239-306 135-202 (208)
38 COG1758 RpoZ DNA-directed RNA 99.3 8E-13 1.7E-17 111.0 4.2 60 311-370 1-61 (74)
39 cd00227 CPT Chloramphenicol (C 99.3 6.8E-12 1.5E-16 122.8 10.6 160 127-304 2-174 (175)
40 PRK14730 coaE dephospho-CoA ki 99.3 1.2E-11 2.6E-16 123.5 12.1 174 128-305 2-193 (195)
41 PF01192 RNA_pol_Rpb6: RNA pol 99.3 1.7E-12 3.8E-17 103.6 4.3 54 317-370 1-54 (57)
42 PRK14733 coaE dephospho-CoA ki 99.3 2E-11 4.3E-16 122.5 13.0 177 127-307 6-199 (204)
43 PRK14732 coaE dephospho-CoA ki 99.3 4.7E-12 1E-16 126.5 8.1 172 129-307 1-191 (196)
44 PRK04040 adenylate kinase; Pro 99.3 1.5E-10 3.2E-15 115.0 16.0 164 126-304 1-187 (188)
45 PTZ00451 dephospho-CoA kinase; 99.2 7E-11 1.5E-15 121.6 13.8 85 219-306 119-207 (244)
46 PLN02422 dephospho-CoA kinase 99.2 7.8E-11 1.7E-15 120.3 13.2 87 218-307 108-195 (232)
47 KOG3220|consensus 99.2 7.7E-11 1.7E-15 115.2 10.4 171 128-306 2-194 (225)
48 COG0237 CoaE Dephospho-CoA kin 99.2 1.2E-10 2.5E-15 116.6 11.3 175 126-307 1-193 (201)
49 PF01258 zf-dskA_traR: Prokary 99.2 1.2E-11 2.6E-16 89.3 2.4 36 83-118 1-36 (36)
50 PRK01184 hypothetical protein; 99.2 1.3E-09 2.7E-14 107.4 17.0 163 128-306 2-178 (184)
51 PRK14734 coaE dephospho-CoA ki 99.2 8.5E-11 1.8E-15 117.8 8.7 68 238-306 126-194 (200)
52 PF01121 CoaE: Dephospho-CoA k 99.2 1.7E-11 3.6E-16 120.8 3.4 162 129-294 2-179 (180)
53 PRK00698 tmk thymidylate kinas 99.1 7.1E-10 1.5E-14 110.5 15.1 170 126-306 2-202 (205)
54 TIGR00152 dephospho-CoA kinase 99.1 2E-10 4.4E-15 113.7 10.9 62 239-301 125-187 (188)
55 cd02022 DPCK Dephospho-coenzym 99.1 3.2E-10 6.9E-15 111.6 10.8 159 129-292 1-175 (179)
56 PRK05480 uridine/cytidine kina 99.1 8E-10 1.7E-14 111.2 13.0 176 125-306 4-208 (209)
57 PRK00091 miaA tRNA delta(2)-is 99.0 3.7E-10 8.1E-15 120.1 8.4 121 125-260 2-131 (307)
58 PRK06762 hypothetical protein; 99.0 4.5E-09 9.8E-14 101.7 14.2 149 126-304 1-162 (166)
59 PRK03333 coaE dephospho-CoA ki 99.0 1.4E-08 3.1E-13 112.0 17.7 233 128-404 2-249 (395)
60 TIGR01360 aden_kin_iso1 adenyl 99.0 1.2E-08 2.5E-13 100.2 14.6 167 127-305 3-186 (188)
61 PRK08233 hypothetical protein; 98.9 2.3E-08 5E-13 97.6 15.8 162 126-307 2-178 (182)
62 PTZ00301 uridine kinase; Provi 98.9 6.9E-09 1.5E-13 104.8 12.0 174 127-305 3-204 (210)
63 PRK06696 uridine kinase; Valid 98.9 1.4E-08 2.9E-13 103.5 11.6 169 123-294 18-213 (223)
64 COG0572 Udk Uridine kinase [Nu 98.9 1.7E-08 3.6E-13 101.4 11.4 171 126-305 7-205 (218)
65 PRK01099 rpoK DNA-directed RNA 98.8 2E-09 4.4E-14 86.9 3.4 48 323-370 6-53 (62)
66 TIGR00235 udk uridine kinase. 98.8 2.5E-08 5.4E-13 100.4 12.0 176 124-305 3-203 (207)
67 TIGR01359 UMP_CMP_kin_fam UMP- 98.8 9.5E-08 2.1E-12 93.7 15.1 160 129-304 1-182 (183)
68 PRK04182 cytidylate kinase; Pr 98.8 9.4E-08 2E-12 93.0 14.5 156 129-306 2-173 (180)
69 cd01672 TMPK Thymidine monopho 98.8 9.8E-08 2.1E-12 94.1 14.6 167 128-305 1-199 (200)
70 TIGR02173 cyt_kin_arch cytidyl 98.8 9.6E-08 2.1E-12 92.3 14.2 154 129-304 2-170 (171)
71 COG1102 Cmk Cytidylate kinase 98.8 1.5E-07 3.3E-12 89.6 14.9 156 129-306 2-172 (179)
72 PRK14531 adenylate kinase; Pro 98.8 2E-07 4.4E-12 91.9 16.3 163 126-304 1-182 (183)
73 KOG3079|consensus 98.8 8.8E-08 1.9E-12 93.0 12.8 168 124-306 5-193 (195)
74 PRK14527 adenylate kinase; Pro 98.8 1.9E-07 4.1E-12 92.7 15.7 164 125-304 4-190 (191)
75 cd02023 UMPK Uridine monophosp 98.8 6.5E-08 1.4E-12 96.4 12.1 167 129-300 1-191 (198)
76 PRK14530 adenylate kinase; Pro 98.8 2.9E-07 6.4E-12 93.1 16.8 169 126-306 2-213 (215)
77 TIGR01313 therm_gnt_kin carboh 98.7 2E-07 4.3E-12 89.9 14.3 151 130-304 1-161 (163)
78 TIGR01351 adk adenylate kinase 98.7 4.5E-07 9.8E-12 91.4 16.1 159 130-304 2-209 (210)
79 PLN02200 adenylate kinase fami 98.7 6.1E-07 1.3E-11 92.3 17.1 166 126-307 42-225 (234)
80 PRK12339 2-phosphoglycerate ki 98.7 1E-07 2.2E-12 95.4 10.8 175 126-305 2-196 (197)
81 PRK13946 shikimate kinase; Pro 98.7 3.6E-07 7.8E-12 90.3 14.1 155 126-306 9-176 (184)
82 COG1936 Predicted nucleotide k 98.7 4.1E-07 9E-12 87.7 13.9 157 129-320 2-168 (180)
83 PRK00131 aroK shikimate kinase 98.7 3.9E-07 8.5E-12 88.0 14.1 68 238-306 97-171 (175)
84 TIGR00041 DTMP_kinase thymidyl 98.7 2.1E-07 4.5E-12 92.2 12.0 26 127-152 3-28 (195)
85 PRK05541 adenylylsulfate kinas 98.7 6.1E-08 1.3E-12 94.8 8.0 153 125-304 5-170 (176)
86 PRK12338 hypothetical protein; 98.6 3.2E-07 6.9E-12 97.7 13.4 177 126-307 3-205 (319)
87 PRK00279 adk adenylate kinase; 98.6 7.4E-07 1.6E-11 90.2 15.5 162 129-306 2-214 (215)
88 PRK14526 adenylate kinase; Pro 98.6 1.5E-06 3.2E-11 88.0 17.4 161 130-306 3-209 (211)
89 PRK14532 adenylate kinase; Pro 98.6 6.9E-07 1.5E-11 88.2 14.3 161 130-306 3-187 (188)
90 PRK09270 nucleoside triphospha 98.6 2.2E-07 4.7E-12 95.1 10.1 163 125-292 31-222 (229)
91 PRK13973 thymidylate kinase; P 98.6 9E-07 1.9E-11 89.6 14.4 169 126-306 2-206 (213)
92 PRK13808 adenylate kinase; Pro 98.6 7.7E-07 1.7E-11 95.4 14.5 162 130-307 3-194 (333)
93 PRK13947 shikimate kinase; Pro 98.6 4.8E-07 1E-11 87.8 11.7 152 129-304 3-166 (171)
94 TIGR03574 selen_PSTK L-seryl-t 98.5 5E-07 1.1E-11 93.5 11.8 155 129-306 1-169 (249)
95 PRK08154 anaerobic benzoate ca 98.5 1.5E-06 3.3E-11 93.0 15.2 155 124-306 130-301 (309)
96 PLN02674 adenylate kinase 98.5 2.6E-06 5.6E-11 87.9 16.0 162 127-304 31-243 (244)
97 PRK05057 aroK shikimate kinase 98.5 2.9E-06 6.4E-11 83.0 15.8 150 127-306 4-171 (172)
98 COG2019 AdkA Archaeal adenylat 98.5 6.6E-07 1.4E-11 85.7 10.3 164 127-306 4-188 (189)
99 PHA02530 pseT polynucleotide k 98.5 2.5E-06 5.4E-11 90.5 15.9 127 126-270 1-136 (300)
100 PRK00889 adenylylsulfate kinas 98.5 3.2E-07 7E-12 89.6 8.4 157 125-306 2-170 (175)
101 PRK13975 thymidylate kinase; P 98.5 5.4E-06 1.2E-10 82.2 17.1 27 126-152 1-27 (196)
102 PLN02348 phosphoribulokinase 98.5 3.1E-07 6.8E-12 99.9 8.7 157 125-290 47-243 (395)
103 cd02026 PRK Phosphoribulokinas 98.5 8.4E-07 1.8E-11 93.3 11.4 157 129-291 1-177 (273)
104 PF07931 CPT: Chloramphenicol 98.5 6.6E-07 1.4E-11 87.7 9.9 159 127-304 1-173 (174)
105 PRK03839 putative kinase; Prov 98.5 4.5E-06 9.8E-11 81.9 15.9 84 217-308 65-155 (180)
106 PRK07429 phosphoribulokinase; 98.5 7.8E-07 1.7E-11 95.7 11.3 162 125-291 6-186 (327)
107 PRK03731 aroL shikimate kinase 98.5 3.2E-06 6.9E-11 82.1 14.4 66 238-306 94-170 (171)
108 PLN02459 probable adenylate ki 98.5 4.3E-06 9.3E-11 86.8 15.8 162 129-306 31-251 (261)
109 PF13671 AAA_33: AAA domain; P 98.5 7.7E-07 1.7E-11 83.4 9.2 111 129-262 1-121 (143)
110 PLN02318 phosphoribulokinase/u 98.4 1.1E-06 2.4E-11 99.6 11.8 186 108-306 51-270 (656)
111 PRK02496 adk adenylate kinase; 98.4 6.3E-06 1.4E-10 81.1 15.8 160 129-304 3-182 (184)
112 PRK06547 hypothetical protein; 98.4 2.6E-06 5.6E-11 83.5 12.8 153 124-289 12-171 (172)
113 PRK14529 adenylate kinase; Pro 98.4 8.3E-06 1.8E-10 83.1 15.9 159 130-304 3-222 (223)
114 PRK12337 2-phosphoglycerate ki 98.4 1.8E-06 4E-11 95.7 11.9 176 126-305 254-460 (475)
115 PF00485 PRK: Phosphoribulokin 98.4 1.3E-07 2.7E-12 94.3 2.4 158 129-291 1-188 (194)
116 PRK13948 shikimate kinase; Pro 98.4 5E-06 1.1E-10 82.3 13.6 154 126-306 9-175 (182)
117 PRK03846 adenylylsulfate kinas 98.4 3.4E-06 7.3E-11 84.3 12.6 157 122-306 19-192 (198)
118 PRK05416 glmZ(sRNA)-inactivati 98.4 7E-06 1.5E-10 86.9 15.3 142 125-306 4-160 (288)
119 COG0563 Adk Adenylate kinase a 98.4 3.4E-06 7.3E-11 83.1 12.1 163 129-304 2-177 (178)
120 COG0703 AroK Shikimate kinase 98.4 6.5E-06 1.4E-10 80.1 13.7 154 127-307 2-169 (172)
121 PRK07667 uridine kinase; Provi 98.4 1.7E-06 3.6E-11 86.3 9.9 158 126-288 16-192 (193)
122 COG0125 Tmk Thymidylate kinase 98.4 6.8E-06 1.5E-10 82.9 14.3 171 125-306 1-203 (208)
123 PLN02924 thymidylate kinase 98.4 8.1E-06 1.8E-10 83.2 14.6 165 125-306 14-203 (220)
124 PRK14528 adenylate kinase; Pro 98.3 8E-06 1.7E-10 81.0 14.1 160 128-303 2-185 (186)
125 cd02025 PanK Pantothenate kina 98.3 1.1E-06 2.4E-11 89.5 8.0 23 129-151 1-23 (220)
126 cd00464 SK Shikimate kinase (S 98.3 6.2E-06 1.3E-10 78.2 12.4 52 238-292 92-149 (154)
127 TIGR00174 miaA tRNA isopenteny 98.3 6E-07 1.3E-11 94.7 5.7 95 129-233 1-105 (287)
128 PRK06217 hypothetical protein; 98.3 3E-05 6.5E-10 76.5 17.0 101 129-260 3-105 (183)
129 PRK05439 pantothenate kinase; 98.3 1.6E-06 3.5E-11 92.3 8.4 26 125-150 84-109 (311)
130 TIGR00017 cmk cytidylate kinas 98.3 5.1E-06 1.1E-10 84.5 11.6 26 126-151 1-26 (217)
131 PRK13974 thymidylate kinase; P 98.3 1.8E-05 3.9E-10 80.1 15.6 171 126-306 2-206 (212)
132 PRK13949 shikimate kinase; Pro 98.3 2E-05 4.3E-10 77.0 15.1 23 129-151 3-25 (169)
133 PRK04220 2-phosphoglycerate ki 98.3 3.1E-06 6.8E-11 89.4 10.0 179 126-306 91-290 (301)
134 cd02020 CMPK Cytidine monophos 98.3 8.6E-06 1.9E-10 76.4 12.1 118 129-274 1-123 (147)
135 cd01428 ADK Adenylate kinase ( 98.3 1.3E-05 2.8E-10 79.1 13.7 131 130-276 2-167 (194)
136 TIGR00554 panK_bact pantothena 98.3 1.6E-06 3.4E-11 91.7 7.2 26 125-150 60-85 (290)
137 COG4088 Predicted nucleotide k 98.3 6.4E-06 1.4E-10 81.5 10.6 178 128-325 2-195 (261)
138 PRK00625 shikimate kinase; Pro 98.2 1.7E-05 3.6E-10 77.9 13.4 23 129-151 2-24 (173)
139 TIGR00455 apsK adenylylsulfate 98.2 1.3E-05 2.7E-10 79.1 11.2 29 123-151 14-42 (184)
140 PRK13976 thymidylate kinase; P 98.2 3.5E-05 7.6E-10 77.9 14.3 169 128-306 1-201 (209)
141 PRK07933 thymidylate kinase; V 98.2 4.9E-05 1.1E-09 77.1 15.2 25 128-152 1-25 (213)
142 PRK08118 topology modulation p 98.1 1.5E-05 3.2E-10 77.7 10.8 97 129-259 3-99 (167)
143 PRK00023 cmk cytidylate kinase 98.1 1.6E-05 3.5E-10 81.3 11.5 26 126-151 3-28 (225)
144 cd02029 PRK_like Phosphoribulo 98.1 3.7E-06 8E-11 87.3 6.7 155 129-288 1-199 (277)
145 cd02024 NRK1 Nicotinamide ribo 98.1 5.9E-06 1.3E-10 82.0 7.8 128 129-262 1-154 (187)
146 cd02028 UMPK_like Uridine mono 98.1 8.2E-06 1.8E-10 80.4 8.6 138 129-269 1-154 (179)
147 PRK15453 phosphoribulokinase; 98.1 1.6E-05 3.4E-10 83.3 10.8 27 125-151 3-29 (290)
148 cd02030 NDUO42 NADH:Ubiquinone 98.1 8.4E-05 1.8E-09 75.6 16.0 23 129-151 1-23 (219)
149 cd02021 GntK Gluconate kinase 98.1 4.3E-05 9.2E-10 72.5 12.8 113 129-261 1-120 (150)
150 COG2074 2-phosphoglycerate kin 98.1 3.4E-05 7.4E-10 78.5 12.5 181 113-306 74-287 (299)
151 PRK09825 idnK D-gluconate kina 98.1 3.1E-05 6.7E-10 76.2 12.1 26 126-151 2-27 (176)
152 PRK13477 bifunctional pantoate 98.1 2.4E-05 5.2E-10 88.6 12.5 92 218-314 404-511 (512)
153 PTZ00088 adenylate kinase 1; P 98.1 0.00013 2.8E-09 74.8 16.6 24 129-152 8-31 (229)
154 PRK05537 bifunctional sulfate 98.1 2.8E-05 6E-10 89.8 12.8 156 125-306 390-562 (568)
155 PF02223 Thymidylate_kin: Thym 98.0 2.1E-05 4.6E-10 77.5 9.6 157 132-300 1-186 (186)
156 PRK11545 gntK gluconate kinase 98.0 0.00017 3.6E-09 70.1 15.5 68 236-306 89-160 (163)
157 PLN02842 nucleotide kinase 98.0 6.5E-05 1.4E-09 84.7 14.2 260 131-417 1-323 (505)
158 PRK05506 bifunctional sulfate 98.0 1.3E-05 2.8E-10 94.0 8.6 160 122-306 455-628 (632)
159 PF08433 KTI12: Chromatin asso 98.0 2.4E-05 5.2E-10 82.1 9.7 156 128-304 2-169 (270)
160 KOG3354|consensus 98.0 9.4E-05 2E-09 70.2 12.2 154 128-304 13-186 (191)
161 PRK06761 hypothetical protein; 98.0 0.00038 8.1E-09 73.4 18.1 120 126-259 2-127 (282)
162 PLN02840 tRNA dimethylallyltra 98.0 8.6E-06 1.9E-10 89.8 5.6 94 125-228 19-121 (421)
163 PRK07261 topology modulation p 97.9 6.7E-05 1.4E-09 73.4 10.7 97 129-259 2-99 (171)
164 COG0529 CysC Adenylylsulfate k 97.9 0.00034 7.3E-09 68.1 14.3 155 122-307 18-192 (197)
165 PF13238 AAA_18: AAA domain; P 97.9 7.2E-06 1.6E-10 74.9 2.8 22 130-151 1-22 (129)
166 COG4639 Predicted kinase [Gene 97.9 0.00021 4.6E-09 68.0 12.6 142 126-293 1-151 (168)
167 PF06414 Zeta_toxin: Zeta toxi 97.8 6.1E-05 1.3E-09 75.3 9.0 120 125-259 13-141 (199)
168 KOG3347|consensus 97.8 0.00022 4.7E-09 67.5 11.4 34 129-162 9-42 (176)
169 PRK00098 GTPase RsgA; Reviewed 97.8 1.7E-05 3.7E-10 84.5 4.6 93 127-219 164-277 (298)
170 PF00406 ADK: Adenylate kinase 97.8 5.7E-05 1.2E-09 72.0 7.5 127 132-277 1-138 (151)
171 PLN02165 adenylate isopentenyl 97.8 5.4E-05 1.2E-09 81.2 8.0 126 123-259 39-195 (334)
172 COG0645 Predicted kinase [Gene 97.8 0.00044 9.6E-09 66.9 13.1 112 128-261 2-126 (170)
173 TIGR01663 PNK-3'Pase polynucle 97.8 0.0002 4.3E-09 81.7 12.2 98 124-261 366-470 (526)
174 PRK14021 bifunctional shikimat 97.7 0.00043 9.2E-09 79.8 15.1 157 126-306 5-176 (542)
175 PF01583 APS_kinase: Adenylyls 97.7 0.00015 3.3E-09 69.8 9.6 106 127-255 2-116 (156)
176 PLN02199 shikimate kinase 97.7 0.0013 2.8E-08 69.6 16.4 26 126-151 101-126 (303)
177 COG0283 Cmk Cytidylate kinase 97.7 0.00067 1.4E-08 68.1 13.1 25 127-151 4-28 (222)
178 PF03668 ATP_bind_2: P-loop AT 97.7 0.00089 1.9E-08 70.2 14.4 140 128-306 2-156 (284)
179 cd01673 dNK Deoxyribonucleosid 97.6 0.00066 1.4E-08 67.2 12.4 22 129-150 1-22 (193)
180 cd02027 APSK Adenosine 5'-phos 97.6 0.00014 3.1E-09 69.4 7.3 23 129-151 1-23 (149)
181 COG3265 GntK Gluconate kinase 97.6 0.0014 3E-08 62.1 13.1 151 133-306 1-159 (161)
182 PF01202 SKI: Shikimate kinase 97.5 0.0013 2.8E-08 63.3 12.1 65 239-305 86-158 (158)
183 KOG3877|consensus 97.5 0.0033 7.2E-08 64.9 15.3 134 117-263 61-242 (393)
184 COG1428 Deoxynucleoside kinase 97.5 0.0015 3.2E-08 65.5 12.5 26 127-152 4-29 (216)
185 COG3911 Predicted ATPase [Gene 97.5 0.00044 9.5E-09 65.3 7.9 60 128-189 10-70 (183)
186 KOG1384|consensus 97.4 0.00054 1.2E-08 72.4 8.5 124 126-260 6-159 (348)
187 COG1072 CoaA Panthothenate kin 97.4 0.00038 8.2E-09 72.2 6.9 134 123-259 78-231 (283)
188 PF13189 Cytidylate_kin2: Cyti 97.3 0.0012 2.6E-08 65.1 9.2 157 129-290 1-177 (179)
189 PF13207 AAA_17: AAA domain; P 97.3 0.00015 3.3E-09 65.8 2.5 23 129-151 1-23 (121)
190 PRK08099 bifunctional DNA-bind 97.2 0.0054 1.2E-07 68.0 14.7 28 124-151 216-243 (399)
191 PRK11860 bifunctional 3-phosph 97.2 0.0035 7.5E-08 74.1 13.0 25 127-151 442-466 (661)
192 PLN02748 tRNA dimethylallyltra 97.2 0.00025 5.4E-09 79.6 3.2 101 123-233 18-128 (468)
193 PRK13951 bifunctional shikimat 97.1 0.0022 4.8E-08 72.9 10.7 23 129-151 2-24 (488)
194 COG1703 ArgK Putative periplas 97.1 0.0053 1.2E-07 64.5 12.2 164 117-307 39-218 (323)
195 PRK12495 hypothetical protein; 97.0 0.00072 1.6E-08 67.4 4.8 45 72-121 29-73 (226)
196 PRK11063 metQ DL-methionine tr 97.0 0.015 3.2E-07 61.3 14.8 175 379-588 45-259 (271)
197 PRK09518 bifunctional cytidyla 97.0 0.0036 7.7E-08 74.7 11.1 67 240-307 157-232 (712)
198 PRK14729 miaA tRNA delta(2)-is 97.0 0.00082 1.8E-08 71.5 5.0 97 127-233 4-109 (300)
199 COG1618 Predicted nucleotide k 97.0 0.0054 1.2E-07 59.1 9.7 26 126-151 4-29 (179)
200 COG4185 Uncharacterized protei 96.9 0.0079 1.7E-07 57.7 10.4 142 126-291 1-156 (187)
201 PHA00729 NTP-binding motif con 96.8 0.0042 9E-08 63.4 8.5 54 129-188 19-74 (226)
202 COG1660 Predicted P-loop-conta 96.8 0.014 3E-07 60.3 11.8 140 128-306 2-157 (286)
203 PRK12269 bifunctional cytidyla 96.8 0.0041 8.9E-08 74.9 9.1 78 240-317 209-296 (863)
204 TIGR03575 selen_PSTK_euk L-ser 96.8 0.014 3E-07 63.3 12.3 53 237-290 154-210 (340)
205 cd02019 NK Nucleoside/nucleoti 96.7 0.001 2.2E-08 55.0 2.6 23 129-151 1-23 (69)
206 COG4619 ABC-type uncharacteriz 96.7 0.0034 7.3E-08 60.9 6.2 52 125-187 27-79 (223)
207 TIGR01223 Pmev_kin_anim phosph 96.7 0.0018 3.8E-08 63.3 4.4 159 129-306 1-177 (182)
208 cd01130 VirB11-like_ATPase Typ 96.5 0.028 6E-07 55.6 11.7 27 126-152 24-50 (186)
209 PRK09087 hypothetical protein; 96.5 0.04 8.6E-07 56.5 13.0 25 127-151 44-68 (226)
210 TIGR01526 nadR_NMN_Atrans nico 96.5 0.018 3.9E-07 62.2 10.8 27 125-151 160-186 (325)
211 COG0324 MiaA tRNA delta(2)-iso 96.4 0.0043 9.3E-08 66.0 5.6 98 126-233 2-109 (308)
212 COG1126 GlnQ ABC-type polar am 96.4 0.0025 5.3E-08 64.2 3.2 26 125-150 26-51 (240)
213 COG1136 SalX ABC-type antimicr 96.4 0.0025 5.5E-08 65.0 3.2 30 122-151 26-55 (226)
214 TIGR00363 lipoprotein, YaeC fa 96.3 0.066 1.4E-06 56.0 13.7 180 381-588 34-246 (258)
215 KOG0744|consensus 96.2 0.099 2.1E-06 55.7 14.0 27 125-151 175-201 (423)
216 COG1160 Predicted GTPases [Gen 96.1 0.011 2.3E-07 65.5 6.7 242 126-400 177-435 (444)
217 KOG3327|consensus 96.1 0.13 2.7E-06 50.8 13.0 176 125-311 3-200 (208)
218 PRK09435 membrane ATPase/prote 96.1 0.03 6.6E-07 60.6 9.9 27 125-151 54-80 (332)
219 smart00382 AAA ATPases associa 96.0 0.0059 1.3E-07 55.0 3.4 26 127-152 2-27 (148)
220 PF03193 DUF258: Protein of un 96.0 0.0048 1E-07 59.8 2.9 25 127-151 35-59 (161)
221 PF13555 AAA_29: P-loop contai 96.0 0.0066 1.4E-07 49.3 3.2 24 127-150 23-46 (62)
222 COG3172 NadR Predicted ATPase/ 96.0 0.14 3E-06 49.4 12.6 29 123-151 4-32 (187)
223 COG0466 Lon ATP-dependent Lon 95.9 0.052 1.1E-06 63.1 11.3 27 125-151 348-374 (782)
224 cd00820 PEPCK_HprK Phosphoenol 95.9 0.0063 1.4E-07 55.0 3.2 23 126-148 14-36 (107)
225 KOG1969|consensus 95.9 0.019 4.2E-07 66.5 7.7 28 124-151 323-350 (877)
226 PHA03132 thymidine kinase; Pro 95.8 0.055 1.2E-06 62.4 11.0 26 126-151 256-281 (580)
227 KOG0057|consensus 95.8 0.01 2.2E-07 66.9 4.8 82 122-214 373-458 (591)
228 COG1116 TauB ABC-type nitrate/ 95.8 0.012 2.6E-07 60.5 5.0 29 123-151 25-53 (248)
229 KOG3308|consensus 95.8 0.07 1.5E-06 53.2 10.0 29 127-155 4-32 (225)
230 PRK06851 hypothetical protein; 95.8 0.091 2E-06 57.6 11.9 47 102-151 192-238 (367)
231 COG4618 ArpD ABC-type protease 95.7 0.0082 1.8E-07 67.0 3.8 56 122-187 357-412 (580)
232 PRK10751 molybdopterin-guanine 95.7 0.0082 1.8E-07 58.9 3.4 27 125-151 4-30 (173)
233 PRK12323 DNA polymerase III su 95.7 0.23 4.9E-06 58.1 15.1 25 127-151 38-62 (700)
234 TIGR00150 HI0065_YjeE ATPase, 95.6 0.018 3.8E-07 54.2 4.9 27 125-151 20-46 (133)
235 COG2274 SunT ABC-type bacterio 95.6 0.011 2.4E-07 70.0 4.3 106 67-186 433-548 (709)
236 PF01926 MMR_HSR1: 50S ribosom 95.5 0.011 2.3E-07 53.5 3.1 21 130-150 2-22 (116)
237 PRK14961 DNA polymerase III su 95.5 0.17 3.7E-06 55.5 13.1 25 127-151 38-62 (363)
238 PF00004 AAA: ATPase family as 95.5 0.0099 2.1E-07 54.2 2.8 22 130-151 1-22 (132)
239 PRK05800 cobU adenosylcobinami 95.5 0.38 8.1E-06 47.1 14.0 23 129-151 3-25 (170)
240 PF01745 IPT: Isopentenyl tran 95.4 0.043 9.2E-07 55.4 7.3 122 128-259 2-138 (233)
241 COG2884 FtsE Predicted ATPase 95.4 0.013 2.8E-07 58.0 3.4 27 124-150 25-51 (223)
242 COG2805 PilT Tfp pilus assembl 95.4 0.048 1E-06 57.6 7.6 85 126-229 124-210 (353)
243 PRK14951 DNA polymerase III su 95.4 0.25 5.3E-06 57.9 14.3 25 127-151 38-62 (618)
244 PF03308 ArgK: ArgK protein; 95.3 0.0097 2.1E-07 61.7 2.5 155 126-306 28-195 (266)
245 COG0593 DnaA ATPase involved i 95.3 0.13 2.7E-06 57.1 11.2 151 212-366 203-391 (408)
246 smart00763 AAA_PrkA PrkA AAA d 95.3 0.014 2.9E-07 63.6 3.6 27 125-151 76-102 (361)
247 PF13521 AAA_28: AAA domain; P 95.3 0.0086 1.9E-07 57.6 1.8 22 130-151 2-23 (163)
248 cd03238 ABC_UvrA The excision 95.3 0.014 3E-07 57.5 3.2 25 124-148 18-42 (176)
249 PLN03046 D-glycerate 3-kinase; 95.3 0.015 3.2E-07 64.3 3.8 26 126-151 211-236 (460)
250 KOG0635|consensus 95.3 0.041 9E-07 52.3 6.1 36 116-151 20-55 (207)
251 PRK07003 DNA polymerase III su 95.3 0.13 2.8E-06 60.9 11.6 25 127-151 38-62 (830)
252 KOG2702|consensus 95.2 0.011 2.4E-07 59.8 2.5 130 124-260 116-280 (323)
253 COG1763 MobB Molybdopterin-gua 95.2 0.016 3.4E-07 56.3 3.3 26 126-151 1-26 (161)
254 TIGR01166 cbiO cobalt transpor 95.2 0.016 3.5E-07 57.2 3.3 28 124-151 15-42 (190)
255 TIGR00960 3a0501s02 Type II (G 95.1 0.016 3.5E-07 58.4 3.3 27 125-151 27-53 (216)
256 cd04163 Era Era subfamily. Er 95.1 0.018 3.8E-07 53.9 3.4 24 127-150 3-26 (168)
257 PRK12422 chromosomal replicati 95.1 0.45 9.8E-06 53.7 15.2 23 128-150 142-164 (445)
258 COG1120 FepC ABC-type cobalami 95.1 0.021 4.6E-07 59.4 4.2 53 124-187 25-78 (258)
259 PF00005 ABC_tran: ABC transpo 95.1 0.014 3E-07 54.1 2.5 27 125-151 9-35 (137)
260 PLN02796 D-glycerate 3-kinase 95.1 0.023 5.1E-07 61.5 4.6 50 102-151 74-124 (347)
261 cd03225 ABC_cobalt_CbiO_domain 95.1 0.018 3.8E-07 57.8 3.4 27 125-151 25-51 (211)
262 COG1132 MdlB ABC-type multidru 95.1 0.03 6.5E-07 65.0 5.7 54 124-187 352-405 (567)
263 cd00009 AAA The AAA+ (ATPases 95.1 0.018 4E-07 52.4 3.2 26 126-151 18-43 (151)
264 cd03292 ABC_FtsE_transporter F 95.1 0.019 4.2E-07 57.6 3.6 27 125-151 25-51 (214)
265 COG1124 DppF ABC-type dipeptid 95.1 0.017 3.7E-07 59.2 3.2 27 125-151 31-57 (252)
266 COG1127 Ttg2A ABC-type transpo 95.0 0.032 7E-07 57.1 5.1 28 124-151 31-58 (263)
267 KOG3078|consensus 95.0 0.19 4E-06 51.6 10.6 38 126-163 14-51 (235)
268 COG0396 sufC Cysteine desulfur 95.0 0.032 7E-07 56.8 5.0 66 119-195 22-87 (251)
269 PRK14969 DNA polymerase III su 95.0 0.27 5.8E-06 56.7 13.2 25 127-151 38-62 (527)
270 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.0 0.02 4.4E-07 57.7 3.6 27 125-151 28-54 (218)
271 cd03224 ABC_TM1139_LivF_branch 95.0 0.019 4.1E-07 58.0 3.4 28 124-151 23-50 (222)
272 TIGR02868 CydC thiol reductant 95.0 0.02 4.4E-07 65.7 4.0 30 123-152 357-386 (529)
273 cd03222 ABC_RNaseL_inhibitor T 95.0 0.018 4E-07 56.7 3.1 27 125-151 23-49 (177)
274 TIGR02673 FtsE cell division A 95.0 0.021 4.5E-07 57.4 3.6 27 125-151 26-52 (214)
275 cd01895 EngA2 EngA2 subfamily. 95.0 0.016 3.5E-07 54.8 2.7 25 127-151 2-26 (174)
276 TIGR00763 lon ATP-dependent pr 95.0 0.068 1.5E-06 64.5 8.5 26 126-151 346-371 (775)
277 cd03261 ABC_Org_Solvent_Resist 95.0 0.022 4.7E-07 58.3 3.8 28 124-151 23-50 (235)
278 COG3839 MalK ABC-type sugar tr 95.0 0.018 3.9E-07 62.2 3.3 28 124-151 26-53 (338)
279 cd03269 ABC_putative_ATPase Th 94.9 0.022 4.7E-07 57.1 3.7 27 125-151 24-50 (210)
280 KOG0056|consensus 94.9 0.018 3.9E-07 64.0 3.1 54 124-187 561-614 (790)
281 COG4175 ProV ABC-type proline/ 94.9 0.036 7.8E-07 58.8 5.2 53 124-186 51-103 (386)
282 PRK14960 DNA polymerase III su 94.9 0.38 8.1E-06 56.4 13.9 25 127-151 37-61 (702)
283 cd03259 ABC_Carb_Solutes_like 94.9 0.024 5.1E-07 57.0 3.8 28 124-151 23-50 (213)
284 cd03263 ABC_subfamily_A The AB 94.9 0.024 5.2E-07 57.3 3.7 27 125-151 26-52 (220)
285 cd03226 ABC_cobalt_CbiO_domain 94.9 0.021 4.5E-07 57.1 3.3 27 125-151 24-50 (205)
286 cd03235 ABC_Metallic_Cations A 94.9 0.02 4.3E-07 57.6 3.1 27 125-151 23-49 (213)
287 PTZ00202 tuzin; Provisional 94.9 0.11 2.5E-06 57.8 9.0 27 126-152 285-311 (550)
288 cd03293 ABC_NrtD_SsuB_transpor 94.9 0.021 4.5E-07 57.8 3.3 27 125-151 28-54 (220)
289 cd03260 ABC_PstB_phosphate_tra 94.9 0.022 4.7E-07 57.9 3.4 27 125-151 24-50 (227)
290 cd01129 PulE-GspE PulE/GspE Th 94.8 0.13 2.9E-06 53.9 9.3 113 126-260 79-197 (264)
291 cd03262 ABC_HisP_GlnQ_permease 94.8 0.024 5.2E-07 56.9 3.6 27 125-151 24-50 (213)
292 cd03256 ABC_PhnC_transporter A 94.8 0.022 4.7E-07 58.4 3.3 27 125-151 25-51 (241)
293 PF05729 NACHT: NACHT domain 94.8 0.02 4.4E-07 54.1 3.0 24 128-151 1-24 (166)
294 cd03258 ABC_MetN_methionine_tr 94.8 0.024 5.1E-07 57.9 3.6 29 124-152 28-56 (233)
295 PF13245 AAA_19: Part of AAA d 94.8 0.026 5.6E-07 47.7 3.2 24 126-149 9-33 (76)
296 COG1117 PstB ABC-type phosphat 94.8 0.023 5.1E-07 57.2 3.3 28 124-151 30-57 (253)
297 KOG0058|consensus 94.8 0.03 6.4E-07 65.1 4.6 30 122-151 489-518 (716)
298 TIGR02315 ABC_phnC phosphonate 94.8 0.022 4.8E-07 58.4 3.3 28 124-151 25-52 (243)
299 TIGR02211 LolD_lipo_ex lipopro 94.8 0.025 5.4E-07 57.2 3.6 27 125-151 29-55 (221)
300 PRK14086 dnaA chromosomal repl 94.8 0.086 1.9E-06 61.2 8.3 153 212-366 405-595 (617)
301 KOG0734|consensus 94.8 0.15 3.3E-06 57.5 9.8 338 93-544 291-663 (752)
302 cd03229 ABC_Class3 This class 94.8 0.027 5.8E-07 55.2 3.7 27 125-151 24-50 (178)
303 cd03219 ABC_Mj1267_LivG_branch 94.8 0.024 5.3E-07 57.8 3.6 27 125-151 24-50 (236)
304 PRK11174 cysteine/glutathione 94.8 0.034 7.3E-07 64.8 5.1 52 124-186 373-424 (588)
305 PF03266 NTPase_1: NTPase; In 94.8 0.019 4.2E-07 56.1 2.6 22 130-151 2-23 (168)
306 PRK11629 lolD lipoprotein tran 94.8 0.023 5.1E-07 58.0 3.3 27 125-151 33-59 (233)
307 cd01131 PilT Pilus retraction 94.7 0.022 4.7E-07 57.0 3.0 23 129-151 3-25 (198)
308 PF01591 6PF2K: 6-phosphofruct 94.7 0.14 3E-06 52.4 8.9 28 124-151 9-36 (222)
309 cd03257 ABC_NikE_OppD_transpor 94.7 0.026 5.7E-07 57.1 3.7 27 125-151 29-55 (228)
310 PRK15177 Vi polysaccharide exp 94.7 0.024 5.2E-07 57.4 3.3 27 125-151 11-37 (213)
311 cd03301 ABC_MalK_N The N-termi 94.7 0.025 5.4E-07 56.8 3.4 27 125-151 24-50 (213)
312 COG3840 ThiQ ABC-type thiamine 94.7 0.025 5.5E-07 55.7 3.2 42 125-166 23-69 (231)
313 PF13401 AAA_22: AAA domain; P 94.7 0.02 4.3E-07 52.4 2.4 26 126-151 3-28 (131)
314 cd03265 ABC_DrrA DrrA is the A 94.7 0.026 5.6E-07 57.1 3.4 27 125-151 24-50 (220)
315 TIGR03608 L_ocin_972_ABC putat 94.7 0.029 6.3E-07 56.0 3.7 27 125-151 22-48 (206)
316 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.7 0.028 6.1E-07 53.2 3.4 28 124-151 23-50 (144)
317 COG3638 ABC-type phosphate/pho 94.7 0.046 9.9E-07 55.9 5.0 27 125-151 28-54 (258)
318 cd03230 ABC_DR_subfamily_A Thi 94.6 0.031 6.7E-07 54.5 3.8 27 125-151 24-50 (173)
319 PF08477 Miro: Miro-like prote 94.6 0.027 5.8E-07 50.6 3.1 22 130-151 2-23 (119)
320 PRK14958 DNA polymerase III su 94.6 0.49 1.1E-05 54.3 13.9 25 127-151 38-62 (509)
321 cd01858 NGP_1 NGP-1. Autoanti 94.6 0.029 6.2E-07 53.7 3.3 25 127-151 102-126 (157)
322 cd03232 ABC_PDR_domain2 The pl 94.6 0.027 5.9E-07 55.9 3.3 26 125-150 31-56 (192)
323 TIGR03864 PQQ_ABC_ATP ABC tran 94.6 0.027 5.9E-07 57.6 3.4 27 125-151 25-51 (236)
324 cd03296 ABC_CysA_sulfate_impor 94.6 0.027 5.9E-07 57.7 3.3 27 125-151 26-52 (239)
325 PRK08691 DNA polymerase III su 94.6 0.44 9.5E-06 56.2 13.5 25 127-151 38-62 (709)
326 cd03214 ABC_Iron-Siderophores_ 94.6 0.034 7.3E-07 54.6 3.8 27 125-151 23-49 (180)
327 PRK12727 flagellar biosynthesi 94.6 0.16 3.5E-06 58.1 9.6 25 126-150 349-373 (559)
328 PRK10584 putative ABC transpor 94.5 0.031 6.7E-07 56.8 3.7 27 125-151 34-60 (228)
329 PRK11248 tauB taurine transpor 94.5 0.028 6E-07 58.5 3.3 28 124-151 24-51 (255)
330 PTZ00265 multidrug resistance 94.5 0.055 1.2E-06 69.5 6.6 31 122-152 1189-1219(1466)
331 cd03218 ABC_YhbG The ABC trans 94.5 0.029 6.2E-07 57.2 3.4 27 125-151 24-50 (232)
332 cd03234 ABCG_White The White s 94.5 0.031 6.8E-07 56.8 3.6 28 124-151 30-57 (226)
333 cd03264 ABC_drug_resistance_li 94.5 0.03 6.5E-07 56.2 3.4 25 126-151 25-49 (211)
334 TIGR01978 sufC FeS assembly AT 94.5 0.028 6.1E-07 57.6 3.3 26 125-150 24-49 (243)
335 PF13191 AAA_16: AAA ATPase do 94.5 0.023 5E-07 55.0 2.6 28 124-151 21-48 (185)
336 KOG3580|consensus 94.5 0.21 4.6E-06 56.3 10.1 214 65-318 564-790 (1027)
337 TIGR03797 NHPM_micro_ABC2 NHPM 94.5 0.035 7.5E-07 66.0 4.5 30 123-152 475-504 (686)
338 PRK13540 cytochrome c biogenes 94.5 0.03 6.5E-07 55.9 3.4 27 125-151 25-51 (200)
339 PRK10247 putative ABC transpor 94.5 0.03 6.4E-07 57.0 3.4 28 124-151 30-57 (225)
340 cd03245 ABCC_bacteriocin_expor 94.5 0.029 6.4E-07 56.6 3.3 27 125-151 28-54 (220)
341 TIGR03410 urea_trans_UrtE urea 94.5 0.033 7.1E-07 56.7 3.7 27 125-151 24-50 (230)
342 PRK00089 era GTPase Era; Revie 94.5 0.03 6.5E-07 59.2 3.5 39 126-164 4-42 (292)
343 cd03295 ABC_OpuCA_Osmoprotecti 94.5 0.03 6.5E-07 57.5 3.4 27 125-151 25-51 (242)
344 TIGR00436 era GTP-binding prot 94.5 0.029 6.3E-07 58.8 3.3 37 129-165 2-38 (270)
345 cd03268 ABC_BcrA_bacitracin_re 94.5 0.031 6.6E-07 56.0 3.4 27 125-151 24-50 (208)
346 cd03223 ABCD_peroxisomal_ALDP 94.5 0.035 7.5E-07 53.9 3.6 28 124-151 24-51 (166)
347 cd03216 ABC_Carb_Monos_I This 94.5 0.036 7.7E-07 53.6 3.7 28 124-151 23-50 (163)
348 COG4107 PhnK ABC-type phosphon 94.5 0.13 2.8E-06 50.3 7.4 27 126-152 31-57 (258)
349 PF10662 PduV-EutP: Ethanolami 94.5 0.029 6.3E-07 53.3 2.9 24 128-151 2-25 (143)
350 PRK11124 artP arginine transpo 94.5 0.03 6.5E-07 57.5 3.4 27 125-151 26-52 (242)
351 cd03246 ABCC_Protease_Secretio 94.5 0.037 8E-07 53.9 3.8 28 124-151 25-52 (173)
352 PRK13541 cytochrome c biogenes 94.5 0.031 6.8E-07 55.5 3.4 27 125-151 24-50 (195)
353 PRK10908 cell division protein 94.5 0.034 7.3E-07 56.3 3.7 28 125-152 26-53 (222)
354 PRK13539 cytochrome c biogenes 94.4 0.034 7.4E-07 55.8 3.7 28 124-151 25-52 (207)
355 cd03266 ABC_NatA_sodium_export 94.4 0.034 7.5E-07 56.0 3.7 27 125-151 29-55 (218)
356 TIGR00073 hypB hydrogenase acc 94.4 0.033 7.2E-07 56.0 3.5 33 119-151 14-46 (207)
357 cd03298 ABC_ThiQ_thiamine_tran 94.4 0.036 7.8E-07 55.6 3.8 29 123-151 20-48 (211)
358 PRK14242 phosphate transporter 94.4 0.03 6.6E-07 57.9 3.3 26 125-150 30-55 (253)
359 cd03283 ABC_MutS-like MutS-lik 94.4 0.031 6.7E-07 56.1 3.2 24 126-149 24-47 (199)
360 cd03271 ABC_UvrA_II The excisi 94.4 0.029 6.2E-07 58.8 3.1 24 124-147 18-41 (261)
361 PHA02575 1 deoxynucleoside mon 94.4 0.032 6.9E-07 56.8 3.3 23 129-151 2-24 (227)
362 TIGR01189 ccmA heme ABC export 94.4 0.037 8.1E-07 55.0 3.8 27 125-151 24-50 (198)
363 PRK13538 cytochrome c biogenes 94.4 0.037 8E-07 55.4 3.8 28 125-152 25-52 (204)
364 cd01918 HprK_C HprK/P, the bif 94.4 0.032 6.9E-07 53.5 3.1 25 127-151 14-38 (149)
365 PRK11784 tRNA 2-selenouridine 94.4 0.22 4.7E-06 54.3 10.0 26 126-151 140-165 (345)
366 PRK14965 DNA polymerase III su 94.4 0.71 1.5E-05 53.9 14.8 25 127-151 38-62 (576)
367 TIGR01420 pilT_fam pilus retra 94.4 0.18 3.9E-06 54.9 9.3 117 126-261 121-244 (343)
368 PRK07994 DNA polymerase III su 94.4 0.52 1.1E-05 55.5 13.5 25 127-151 38-62 (647)
369 PRK11176 lipid transporter ATP 94.4 0.043 9.2E-07 63.9 4.7 29 124-152 366-394 (582)
370 TIGR02770 nickel_nikD nickel i 94.4 0.032 6.9E-07 56.9 3.3 27 125-151 10-36 (230)
371 TIGR01184 ntrCD nitrate transp 94.4 0.036 7.9E-07 56.6 3.6 27 125-151 9-35 (230)
372 PRK11264 putative amino-acid A 94.3 0.034 7.3E-07 57.4 3.4 27 125-151 27-53 (250)
373 TIGR03771 anch_rpt_ABC anchore 94.3 0.037 8E-07 56.3 3.6 27 125-151 4-30 (223)
374 PRK14250 phosphate ABC transpo 94.3 0.034 7.3E-07 57.2 3.3 27 125-151 27-53 (241)
375 cd03254 ABCC_Glucan_exporter_l 94.3 0.037 8E-07 56.2 3.6 28 124-151 26-53 (229)
376 TIGR00972 3a0107s01c2 phosphat 94.3 0.034 7.4E-07 57.3 3.3 28 124-151 24-51 (247)
377 cd03247 ABCC_cytochrome_bd The 94.3 0.04 8.6E-07 53.9 3.6 28 124-151 25-52 (178)
378 PRK10895 lipopolysaccharide AB 94.3 0.039 8.4E-07 56.6 3.7 27 125-151 27-53 (241)
379 PF03205 MobB: Molybdopterin g 94.3 0.028 6.2E-07 53.2 2.5 24 128-151 1-24 (140)
380 PF03180 Lipoprotein_9: NLPA l 94.3 0.43 9.3E-06 49.3 11.3 188 382-606 16-236 (237)
381 cd03215 ABC_Carb_Monos_II This 94.3 0.039 8.4E-07 54.3 3.5 27 125-151 24-50 (182)
382 PF07728 AAA_5: AAA domain (dy 94.3 0.028 6.1E-07 52.3 2.4 22 130-151 2-23 (139)
383 PRK09493 glnQ glutamine ABC tr 94.3 0.035 7.7E-07 56.9 3.3 27 125-151 25-51 (240)
384 PF13173 AAA_14: AAA domain 94.3 0.037 8.1E-07 51.1 3.2 25 127-151 2-26 (128)
385 PRK06851 hypothetical protein; 94.3 0.028 6.1E-07 61.5 2.7 27 125-151 28-54 (367)
386 COG3842 PotA ABC-type spermidi 94.3 0.034 7.4E-07 60.5 3.3 27 125-151 29-55 (352)
387 cd03237 ABC_RNaseL_inhibitor_d 94.2 0.037 8.1E-07 57.3 3.5 26 126-151 24-49 (246)
388 PRK10744 pstB phosphate transp 94.2 0.035 7.6E-07 57.8 3.3 27 125-151 37-63 (260)
389 TIGR02323 CP_lyasePhnK phospho 94.2 0.04 8.6E-07 57.0 3.7 28 124-151 26-53 (253)
390 PRK14267 phosphate ABC transpo 94.2 0.036 7.7E-07 57.3 3.3 27 125-151 28-54 (253)
391 cd03228 ABCC_MRP_Like The MRP 94.2 0.042 9.2E-07 53.4 3.7 28 124-151 25-52 (171)
392 TIGR03015 pepcterm_ATPase puta 94.2 0.035 7.6E-07 57.6 3.3 27 126-152 42-68 (269)
393 cd04155 Arl3 Arl3 subfamily. 94.2 0.039 8.5E-07 52.9 3.4 24 127-150 14-37 (173)
394 TIGR03005 ectoine_ehuA ectoine 94.2 0.036 7.8E-07 57.3 3.3 27 125-151 24-50 (252)
395 PF08303 tRNA_lig_kinase: tRNA 94.2 1.3 2.8E-05 43.2 13.5 28 130-157 2-29 (168)
396 PRK14247 phosphate ABC transpo 94.2 0.037 7.9E-07 57.2 3.3 27 125-151 27-53 (250)
397 PRK13657 cyclic beta-1,2-gluca 94.2 0.044 9.5E-07 63.9 4.4 29 124-152 358-386 (588)
398 TIGR01277 thiQ thiamine ABC tr 94.2 0.042 9E-07 55.3 3.7 31 122-152 19-49 (213)
399 cd03252 ABCC_Hemolysin The ABC 94.2 0.036 7.9E-07 56.6 3.3 28 124-151 25-52 (237)
400 cd03233 ABC_PDR_domain1 The pl 94.2 0.035 7.6E-07 55.6 3.1 27 125-151 31-57 (202)
401 TIGR02324 CP_lyasePhnL phospho 94.2 0.041 8.9E-07 55.7 3.6 27 125-151 32-58 (224)
402 PRK11300 livG leucine/isoleuci 94.2 0.04 8.6E-07 57.0 3.6 27 125-151 29-55 (255)
403 PRK05342 clpX ATP-dependent pr 94.2 0.056 1.2E-06 60.3 4.9 24 128-151 109-132 (412)
404 PRK11247 ssuB aliphatic sulfon 94.2 0.04 8.7E-07 57.5 3.6 27 125-151 36-62 (257)
405 PRK12289 GTPase RsgA; Reviewed 94.2 0.036 7.8E-07 60.5 3.4 24 127-150 172-195 (352)
406 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.2 0.037 8.1E-07 56.3 3.3 28 124-151 45-72 (224)
407 COG1125 OpuBA ABC-type proline 94.2 0.037 8.1E-07 57.1 3.2 29 123-151 23-51 (309)
408 PRK10771 thiQ thiamine transpo 94.2 0.042 9.1E-07 56.1 3.7 28 124-151 22-49 (232)
409 PF00448 SRP54: SRP54-type pro 94.2 0.033 7.1E-07 55.9 2.7 25 127-151 1-25 (196)
410 TIGR02857 CydD thiol reductant 94.1 0.05 1.1E-06 62.5 4.7 30 123-152 344-373 (529)
411 cd03236 ABC_RNaseL_inhibitor_d 94.1 0.043 9.4E-07 57.2 3.8 28 124-151 23-50 (255)
412 PRK14241 phosphate transporter 94.1 0.038 8.3E-07 57.4 3.3 27 125-151 28-54 (258)
413 PF05049 IIGP: Interferon-indu 94.1 0.071 1.5E-06 58.5 5.4 42 127-168 35-80 (376)
414 PRK14964 DNA polymerase III su 94.1 0.25 5.3E-06 56.3 9.9 24 127-150 35-58 (491)
415 TIGR03427 ABC_peri_uca ABC tra 94.1 0.43 9.3E-06 51.7 11.4 133 375-533 17-163 (328)
416 PRK09183 transposase/IS protei 94.1 0.25 5.3E-06 51.7 9.3 26 125-150 100-125 (259)
417 PRK14269 phosphate ABC transpo 94.1 0.04 8.7E-07 56.8 3.4 27 125-151 26-52 (246)
418 cd03251 ABCC_MsbA MsbA is an e 94.1 0.045 9.8E-07 55.8 3.7 27 125-151 26-52 (234)
419 PRK15056 manganese/iron transp 94.1 0.04 8.6E-07 57.8 3.3 28 124-151 30-57 (272)
420 PRK14274 phosphate ABC transpo 94.1 0.041 8.9E-07 57.2 3.4 28 124-151 35-62 (259)
421 PRK13645 cbiO cobalt transport 94.1 0.044 9.5E-07 58.1 3.6 27 125-151 35-61 (289)
422 cd03244 ABCC_MRP_domain2 Domai 94.0 0.042 9.2E-07 55.5 3.4 27 125-151 28-54 (221)
423 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.0 0.046 9.9E-07 55.9 3.7 27 125-151 27-53 (238)
424 TIGR03796 NHPM_micro_ABC1 NHPM 94.0 0.045 9.8E-07 65.3 4.2 30 123-152 501-530 (710)
425 PRK13894 conjugal transfer ATP 94.0 0.81 1.7E-05 49.4 13.3 25 126-150 147-171 (319)
426 TIGR00101 ureG urease accessor 94.0 0.043 9.4E-07 55.1 3.3 25 127-151 1-25 (199)
427 PRK13648 cbiO cobalt transport 94.0 0.045 9.8E-07 57.3 3.6 27 125-151 33-59 (269)
428 PRK14239 phosphate transporter 94.0 0.041 9E-07 56.8 3.3 26 125-150 29-54 (252)
429 PRK08084 DNA replication initi 94.0 0.22 4.8E-06 51.2 8.6 23 128-150 46-68 (235)
430 PRK14262 phosphate ABC transpo 94.0 0.042 9.1E-07 56.7 3.3 26 125-150 27-52 (250)
431 cd03294 ABC_Pro_Gly_Bertaine T 94.0 0.048 1E-06 57.2 3.8 28 125-152 48-75 (269)
432 PRK14248 phosphate ABC transpo 94.0 0.043 9.2E-07 57.4 3.4 26 125-150 45-70 (268)
433 cd03250 ABCC_MRP_domain1 Domai 94.0 0.048 1E-06 54.5 3.6 28 124-151 28-55 (204)
434 COG1118 CysA ABC-type sulfate/ 94.0 0.042 9.1E-07 58.1 3.2 27 125-151 26-52 (345)
435 PRK13638 cbiO cobalt transport 94.0 0.046 9.9E-07 57.3 3.6 27 125-151 25-51 (271)
436 PRK14255 phosphate ABC transpo 94.0 0.043 9.3E-07 56.7 3.3 26 125-150 29-54 (252)
437 TIGR02881 spore_V_K stage V sp 94.0 0.054 1.2E-06 56.5 4.1 27 125-151 40-66 (261)
438 PRK10790 putative multidrug tr 94.0 0.051 1.1E-06 63.4 4.3 31 122-152 362-392 (592)
439 PRK14240 phosphate transporter 94.0 0.044 9.4E-07 56.6 3.3 27 124-150 26-52 (250)
440 cd03290 ABCC_SUR1_N The SUR do 94.0 0.044 9.6E-07 55.3 3.3 28 124-151 24-51 (218)
441 PRK11701 phnK phosphonate C-P 94.0 0.048 1E-06 56.6 3.7 27 125-151 30-56 (258)
442 TIGR00958 3a01208 Conjugate Tr 94.0 0.052 1.1E-06 64.9 4.4 31 122-152 502-532 (711)
443 PRK10575 iron-hydroxamate tran 94.0 0.044 9.6E-07 57.2 3.4 27 125-151 35-61 (265)
444 cd03267 ABC_NatA_like Similar 93.9 0.044 9.5E-07 56.2 3.3 27 125-151 45-71 (236)
445 PRK12288 GTPase RsgA; Reviewed 93.9 0.022 4.8E-07 62.1 1.1 25 127-151 205-229 (347)
446 cd03231 ABC_CcmA_heme_exporter 93.9 0.05 1.1E-06 54.4 3.6 28 124-151 23-50 (201)
447 PRK14273 phosphate ABC transpo 93.9 0.044 9.6E-07 56.7 3.4 28 124-151 30-57 (254)
448 PRK14235 phosphate transporter 93.9 0.045 9.7E-07 57.3 3.4 27 125-151 43-69 (267)
449 PRK14261 phosphate ABC transpo 93.9 0.044 9.6E-07 56.7 3.3 26 125-150 30-55 (253)
450 PRK13632 cbiO cobalt transport 93.9 0.048 1.1E-06 57.2 3.6 28 125-152 33-60 (271)
451 PRK09544 znuC high-affinity zi 93.9 0.046 9.9E-07 56.8 3.4 28 124-151 27-54 (251)
452 cd03253 ABCC_ATM1_transporter 93.9 0.049 1.1E-06 55.6 3.6 28 124-151 24-51 (236)
453 cd03369 ABCC_NFT1 Domain 2 of 93.9 0.053 1.2E-06 54.3 3.7 27 125-151 32-58 (207)
454 PRK14259 phosphate ABC transpo 93.9 0.045 9.8E-07 57.4 3.3 28 124-151 36-63 (269)
455 PRK10619 histidine/lysine/argi 93.9 0.05 1.1E-06 56.5 3.6 28 125-152 29-56 (257)
456 cd03297 ABC_ModC_molybdenum_tr 93.9 0.052 1.1E-06 54.6 3.7 26 125-151 22-47 (214)
457 PRK13543 cytochrome c biogenes 93.9 0.051 1.1E-06 54.9 3.6 28 125-152 35-62 (214)
458 PRK14251 phosphate ABC transpo 93.9 0.047 1E-06 56.4 3.4 27 125-151 28-54 (251)
459 PRK13649 cbiO cobalt transport 93.9 0.045 9.7E-07 57.6 3.3 27 125-151 31-57 (280)
460 PRK11160 cysteine/glutathione 93.9 0.059 1.3E-06 62.7 4.5 29 124-152 363-391 (574)
461 PRK14256 phosphate ABC transpo 93.8 0.047 1E-06 56.5 3.3 28 124-151 27-54 (252)
462 CHL00131 ycf16 sulfate ABC tra 93.8 0.044 9.5E-07 56.6 3.1 26 125-150 31-56 (252)
463 TIGR03411 urea_trans_UrtD urea 93.8 0.048 1E-06 56.0 3.3 27 125-151 26-52 (242)
464 cd04164 trmE TrmE (MnmE, ThdF, 93.8 0.052 1.1E-06 50.5 3.3 24 128-151 2-25 (157)
465 COG1219 ClpX ATP-dependent pro 93.8 0.12 2.5E-06 55.1 6.1 94 129-232 99-195 (408)
466 PRK14245 phosphate ABC transpo 93.8 0.048 1E-06 56.3 3.3 25 125-149 27-51 (250)
467 PRK13548 hmuV hemin importer A 93.8 0.047 1E-06 56.8 3.3 27 125-151 26-52 (258)
468 PRK13547 hmuV hemin importer A 93.8 0.047 1E-06 57.5 3.3 27 125-151 25-51 (272)
469 PRK14268 phosphate ABC transpo 93.8 0.048 1E-06 56.7 3.3 27 125-151 36-62 (258)
470 PRK11831 putative ABC transpor 93.8 0.054 1.2E-06 56.8 3.7 27 125-151 31-57 (269)
471 PRK10522 multidrug transporter 93.8 0.065 1.4E-06 62.0 4.7 28 125-152 347-374 (547)
472 cd03116 MobB Molybdenum is an 93.8 0.054 1.2E-06 52.5 3.4 24 128-151 2-25 (159)
473 TIGR02769 nickel_nikE nickel i 93.8 0.052 1.1E-06 56.7 3.6 27 125-151 35-61 (265)
474 PRK14237 phosphate transporter 93.8 0.049 1.1E-06 57.0 3.4 27 125-151 44-70 (267)
475 cd03112 CobW_like The function 93.8 0.057 1.2E-06 52.1 3.6 25 128-152 1-25 (158)
476 PRK00093 GTP-binding protein D 93.8 0.24 5.2E-06 55.5 9.1 26 126-151 172-197 (435)
477 TIGR01188 drrA daunorubicin re 93.8 0.049 1.1E-06 58.1 3.4 27 125-151 17-43 (302)
478 cd03248 ABCC_TAP TAP, the Tran 93.8 0.057 1.2E-06 54.8 3.7 27 125-151 38-64 (226)
479 PRK14270 phosphate ABC transpo 93.8 0.05 1.1E-06 56.2 3.4 27 125-151 28-54 (251)
480 KOG1970|consensus 93.8 0.2 4.4E-06 56.7 8.2 26 126-151 109-134 (634)
481 TIGR03238 dnd_assoc_3 dnd syst 93.8 0.041 8.8E-07 61.9 2.8 22 124-145 29-50 (504)
482 PRK13647 cbiO cobalt transport 93.8 0.048 1E-06 57.3 3.3 27 125-151 29-55 (274)
483 cd03217 ABC_FeS_Assembly ABC-t 93.8 0.051 1.1E-06 54.3 3.3 26 125-150 24-49 (200)
484 PRK14249 phosphate ABC transpo 93.8 0.051 1.1E-06 56.2 3.4 27 125-151 28-54 (251)
485 PRK11614 livF leucine/isoleuci 93.7 0.048 1E-06 55.8 3.1 27 125-151 29-55 (237)
486 TIGR01193 bacteriocin_ABC ABC- 93.7 0.054 1.2E-06 64.6 4.1 30 122-151 495-524 (708)
487 TIGR03740 galliderm_ABC gallid 93.7 0.058 1.2E-06 54.7 3.7 28 125-152 24-51 (223)
488 PRK09111 DNA polymerase III su 93.7 1.6 3.5E-05 51.1 15.9 25 127-151 46-70 (598)
489 PRK10419 nikE nickel transport 93.7 0.05 1.1E-06 57.0 3.3 27 125-151 36-62 (268)
490 cd03213 ABCG_EPDR ABCG transpo 93.7 0.053 1.1E-06 53.9 3.3 28 124-151 32-59 (194)
491 TIGR00176 mobB molybdopterin-g 93.7 0.043 9.3E-07 52.9 2.5 23 129-151 1-23 (155)
492 TIGR01288 nodI ATP-binding ABC 93.7 0.051 1.1E-06 58.0 3.4 28 124-151 27-54 (303)
493 PRK14238 phosphate transporter 93.7 0.053 1.1E-06 56.9 3.4 27 125-151 48-74 (271)
494 cd04159 Arl10_like Arl10-like 93.7 0.046 1E-06 50.7 2.7 21 130-150 2-22 (159)
495 PRK14253 phosphate ABC transpo 93.7 0.054 1.2E-06 55.9 3.4 27 125-151 27-53 (249)
496 PRK11022 dppD dipeptide transp 93.6 0.051 1.1E-06 58.8 3.2 29 123-151 29-57 (326)
497 TIGR00968 3a0106s01 sulfate AB 93.6 0.061 1.3E-06 55.2 3.7 28 124-151 23-50 (237)
498 cd03278 ABC_SMC_barmotin Barmo 93.6 0.052 1.1E-06 54.3 3.0 23 126-149 22-44 (197)
499 PRK11153 metN DL-methionine tr 93.6 0.059 1.3E-06 58.7 3.7 27 125-151 29-55 (343)
500 PRK14244 phosphate ABC transpo 93.6 0.056 1.2E-06 55.9 3.4 26 125-150 29-54 (251)
No 1
>COG0181 HemC Porphobilinogen deaminase [Coenzyme metabolism]
Probab=100.00 E-value=4.3e-104 Score=808.82 Aligned_cols=298 Identities=49% Similarity=0.762 Sum_probs=292.5
Q ss_pred ccchHHHHHHHHHHHHHHhhCCCceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEEeeCCCCCCCCC
Q psy11425 371 VEIRLAIWQAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLKDIPMNLP 450 (672)
Q Consensus 371 r~S~LAl~Q~~~v~~~l~~~~p~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aVHSlKD~p~~~~ 450 (672)
|+|+||+|||++|+++|++.||+++|||++|+|+||+++|+||+++||||+||||||+||++|+||+|||||||||+++|
T Consensus 9 R~S~LAl~Qa~~V~~~L~~~~p~~~~ei~~i~T~GD~i~d~pL~~iGgkGlFtkEle~all~g~~DiAVHSlKDvP~~~p 88 (307)
T COG0181 9 RGSKLALAQANEVIERLKAAYPDLEVEIVTIKTKGDRILDKPLSKIGGKGLFTKELEQALLEGEIDIAVHSLKDVPTELP 88 (307)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCceEEEEEEecccchhccchHHHcCCcEEEHHHHHHHHHcCCCCEEEeecccCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCCCceEEecCCCCCcCCCCCCeeecCcHHHHHHHHHhCCCCeEEcccCCHHHHHhhhcCCCCCEeehh
Q psy11425 451 SGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILA 530 (672)
Q Consensus 451 ~gl~i~a~~~R~d~~D~lv~~~~~~~~~lp~~~~iGTsS~RR~~ql~~~~p~~~~~~iRGNv~tRl~kl~~g~~daiilA 530 (672)
+||.|+||++|+||||+||+++|.+|++||+||+|||||+||++||+++|||++|++|||||||||+||++|+|||||||
T Consensus 89 ~gL~laai~~R~dprDalVs~~~~~l~~LP~Ga~VGTSSlRR~aql~~~rPdl~i~~lRGNVdTRL~KL~~g~yDAIILA 168 (307)
T COG0181 89 EGLVLAAIPEREDPRDALVSRDGYDLEELPEGAVVGTSSLRRQAQLKALRPDLKIEPLRGNVDTRLRKLDEGEYDAIILA 168 (307)
T ss_pred CCceEEEecCCCChhheEEECCCCchhhCCCCCccccchHHHHHHHHHhCCCCeEEeccCcHHHHHHHhhcCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHhhcCCCCceeeecCCCCCCCCCCCceEEEEEecCcHHHHHHhhccCChhhHHhHHHHHHHHHHhcCCCCccceeEE
Q psy11425 531 AAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAAFA 610 (672)
Q Consensus 531 ~Agl~Rl~~~~~~~~~l~~~~~~pa~gQGalave~r~~d~~~~~~l~~i~~~~t~~~~~aER~~l~~l~ggC~~pig~~a 610 (672)
+|||+|||++++++++|+|+.|+|||||||||||||.+|.++.++|+.|||++|+.|+.|||+||+.|+|||++|||+||
T Consensus 169 ~AGL~RLgl~~~~~~~l~p~~~~PA~gQGal~ie~R~~d~~~~~ll~~i~~~~t~~~v~aERa~l~~L~ggC~~PIg~~a 248 (307)
T COG0181 169 AAGLKRLGLENRITEILDPEEFLPAPGQGALAIECRAGDEKVLELLAELNDEDTRICVTAERAFLRELEGGCQVPIGAYA 248 (307)
T ss_pred HHHHHhcCCcccceeecChhhcCCCCCCceEEEEEecCcHHHHHHHHhccCchHHHHHHHHHHHHHhhCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCeEEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHhhHHHHHHHHh
Q psy11425 611 MVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEIIKSYE 670 (672)
Q Consensus 611 ~~~~~~~~~~~l~~~~~~~dg~~~~~~~~~~~~~~~~~lg~~~a~~l~~~g~~~~l~~~~ 670 (672)
++. .+++++|+|.|+++||++.++.+..|+.++++++|.++|++|+++|+.+++..++
T Consensus 249 ~~~--~~~~l~l~~~v~~~DG~~~~~~~~~g~~~~a~~lG~~~a~~l~~~ga~e~l~~~~ 306 (307)
T COG0181 249 ELT--GGGELRLRALVGSPDGSQIIKAEIRGDAEDAEELGKELAEELLEKGAKEILEGVR 306 (307)
T ss_pred EEc--CCCeEEEEEEEECCCCceeEEEEeecchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 993 3349999999999999999999999999999999999999999999999998764
No 2
>TIGR00212 hemC porphobilinogen deaminase. Biosynthesis of cofactors, prosthetic groups, and carriers: Heme and porphyrin
Probab=100.00 E-value=2.8e-100 Score=787.58 Aligned_cols=289 Identities=48% Similarity=0.748 Sum_probs=283.8
Q ss_pred cc-ccchHHHHHHHHHHHHHHhhCCCceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEEeeCCCCCC
Q psy11425 369 IG-VEIRLAIWQAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLKDIPM 447 (672)
Q Consensus 369 v~-r~S~LAl~Q~~~v~~~l~~~~p~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aVHSlKD~p~ 447 (672)
|+ |+|+||+|||++|+++|++.||+++||+++|+|+||++++.||++|||||+||||||+||++|+||||||||||||+
T Consensus 3 IgTR~S~LAl~Qa~~V~~~L~~~~p~~~~ei~~i~T~GD~~~~~~L~~iGgkGlFtkele~aLl~g~iDiAVHSlKDlPt 82 (292)
T TIGR00212 3 IGTRGSKLALAQANLVREQLKAVYPELDTEIVIIKTTGDKIQDKPLYDIGGKGLFTKELEQALLDGEIDLAVHSLKDVPT 82 (292)
T ss_pred EEcCCCHHHHHHHHHHHHHHHHhCCCceEEEEEEeeeCcccccCcHHHcCCceeeHHHHHHHHhcCCCCEEEeccccCCC
Confidence 44 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEecCCCCCCceEEecCCCCCcCCCCCCeeecCcHHHHHHHHHhCCCCeEEcccCCHHHHHhhhcCCCCCEe
Q psy11425 448 NLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAI 527 (672)
Q Consensus 448 ~~~~gl~i~a~~~R~d~~D~lv~~~~~~~~~lp~~~~iGTsS~RR~~ql~~~~p~~~~~~iRGNv~tRl~kl~~g~~dai 527 (672)
++|+||+|+||++|+|||||||++++.++.+||+|++|||||+||++||+++|||++|++|||||+|||+||++|+||||
T Consensus 83 ~lp~gl~i~av~~RedprD~lv~~~~~~l~~Lp~ga~VGTsS~RR~aql~~~rPdl~i~~iRGNV~TRL~KL~~g~~Dai 162 (292)
T TIGR00212 83 VLPEGLEIAAVLKREDPRDVLVSRKYLSLDSLPQGAKVGTSSLRRKAQLKAIRPDLKIEPLRGNIDTRLRKLDEGEYDAI 162 (292)
T ss_pred CCCCCcEEEEEecCCCCceEEEECCCCChhHCCCCCEeccCCHHHHHHHHHHCCCCEEEECcCCHHHHHHHhcCCCCCEe
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred ehhHhhHhhcCCCCceeeecCCCCCCCCCCCceEEEEEecCcHHHHHHhhccCChhhHHhHHHHHHHHHHhcCCCCccce
Q psy11425 528 ILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLA 607 (672)
Q Consensus 528 ilA~Agl~Rl~~~~~~~~~l~~~~~~pa~gQGalave~r~~d~~~~~~l~~i~~~~t~~~~~aER~~l~~l~ggC~~pig 607 (672)
|||+|||+|||+.++++++|+++.|+|||||||||||||++|.++.++|+.|||++|+.++.|||+||+.|+|||++|||
T Consensus 163 iLA~AGL~RLgl~~~i~~~l~~~~~~PA~gQGalaIe~r~~d~~~~~ll~~l~d~~t~~~~~aER~~l~~L~ggC~~Pig 242 (292)
T TIGR00212 163 ILAEAGLKRLGLEDVITEVLDPEVMLPAPGQGAIAVECRKDDTEIKEILKEINHPPTRVEATAERAFLKELGGGCQTPIG 242 (292)
T ss_pred ehHhhHHHhCCCccccccccChhhcCCccccceEEEEEecCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccCCCeEEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHhh
Q psy11425 608 AFAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKG 661 (672)
Q Consensus 608 ~~a~~~~~~~~~~~l~~~~~~~dg~~~~~~~~~~~~~~~~~lg~~~a~~l~~~g 661 (672)
|||++ ++++++|+|.|+++||++.++.+..++.+++ ++|.++|++|+++|
T Consensus 243 a~a~~---~~~~l~l~~~v~~~dG~~~~~~~~~g~~~~a-~lG~~la~~l~~~g 292 (292)
T TIGR00212 243 AYAEY---NGNKLTLIAMVADLDGKEVIREEKEGNIEDA-ELGTEVAEELLKRG 292 (292)
T ss_pred EEEEE---eCCEEEEEEEEECCCCCEEEEEEEecCHHHH-HHHHHHHHHHHhcC
Confidence 99999 7889999999999999999999999999999 99999999999876
No 3
>cd00494 HMBS Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12. HMBS catalyzes the conversion of porphobilinogen (PBG) into hydroxymethylbilane (HMB). HMBS consists of three domains, and is believed to bind substrate through a hinge-bending motion of domains I and II. HMBS is found in all organisms except viruses.
Probab=100.00 E-value=4.3e-99 Score=778.82 Aligned_cols=287 Identities=50% Similarity=0.760 Sum_probs=281.5
Q ss_pred cc-ccchHHHHHHHHHHHHHHhhCCCceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEEeeCCCCCC
Q psy11425 369 IG-VEIRLAIWQAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLKDIPM 447 (672)
Q Consensus 369 v~-r~S~LAl~Q~~~v~~~l~~~~p~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aVHSlKD~p~ 447 (672)
|+ |+|+||+|||++|+++|++.||+++||+++|+|+||+++++||++|||||+||||||+||++|+||||||||||||+
T Consensus 3 IgtR~S~LAl~Qa~~V~~~L~~~~p~~~~ei~~i~T~GD~~~~~~L~~iggkG~Ftkele~aLl~g~iDiAVHSlKDlP~ 82 (292)
T cd00494 3 IGTRKSKLALIQTNKVIEKLKELCPGIEVEIVIIKTTGDKILDKPLAKIGGKGLFTKELEEALLNGEIDLAVHSLKDVPT 82 (292)
T ss_pred EEcCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEEEecCcccccccHHHcCCcceeHHHHHHHHHcCCCCEEEeccccCCC
Confidence 45 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEecCCCCCCceEEecCCCCCcCCCCCCeeecCcHHHHHHHHHhCCCCeEEcccCCHHHHHhhhcCCCCCEe
Q psy11425 448 NLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAI 527 (672)
Q Consensus 448 ~~~~gl~i~a~~~R~d~~D~lv~~~~~~~~~lp~~~~iGTsS~RR~~ql~~~~p~~~~~~iRGNv~tRl~kl~~g~~dai 527 (672)
++|+||.|+||++|+|||||||++++.+|.+||+|++|||||+||++||+++|||++|++|||||+|||+||++|+||||
T Consensus 83 ~lp~gl~i~av~~RedprDvlv~~~~~~l~~Lp~ga~IGTsS~RR~aql~~~rpdl~~~~iRGNV~TRL~KL~~ge~Dai 162 (292)
T cd00494 83 ELPEGLVLGAIPKREDPRDALVSRNGSSLEDLPAGSVVGTSSLRRQAQLKRKRPDLKFEPLRGNVDTRLRKLDEGEYDAI 162 (292)
T ss_pred CCCCCcEEEEEecCCCCceEEEECCCCChhHCCCCCEEecCCHHHHHHHHHHCCCCEEEEcCCCHHHHHHHhcCCCCCEe
Confidence 99999999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred ehhHhhHhhcCCCCceeeecCCCCCCCCCCCceEEEEEecCcHHHHHHhhccCChhhHHhHHHHHHHHHHhcCCCCccce
Q psy11425 528 ILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLA 607 (672)
Q Consensus 528 ilA~Agl~Rl~~~~~~~~~l~~~~~~pa~gQGalave~r~~d~~~~~~l~~i~~~~t~~~~~aER~~l~~l~ggC~~pig 607 (672)
|||+|||+|||+.++++++|+++.|+||||||+||||||++|+++.++|+.|||++|+.++.|||+||+.|||||++|||
T Consensus 163 iLA~AGL~RLgl~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll~~i~d~~t~~~~~aER~~L~~L~ggC~~Pig 242 (292)
T cd00494 163 ILAAAGLKRLGLEDRITQYLSPEVMLPAVGQGALAIECRKGDEELLALLKPLNHEETALCVLAERAFLRELEGGCQVPIG 242 (292)
T ss_pred ehHhhHHHHcCCcccCccccCccccCCccccceEEEEEecCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccCCC-eEEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHH
Q psy11425 608 AFAMVNNFNES-EINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLK 658 (672)
Q Consensus 608 ~~a~~~~~~~~-~~~l~~~~~~~dg~~~~~~~~~~~~~~~~~lg~~~a~~l~ 658 (672)
|||++ +++ +++|+|.|+++||++.++.+..++.+++.++|.++|++|+
T Consensus 243 ~~a~~---~~~~~l~l~~~v~s~dG~~~~~~~~~g~~~~a~~lg~~la~~l~ 291 (292)
T cd00494 243 VYAEL---DGGEELKLKGLVGSPDGKRLIEGEVRGNIEDAEELGKKLAEELL 291 (292)
T ss_pred EEEEE---CCCCEEEEEEEEECCCCCEEEEEEEecCHHHHHHHHHHHHHHHh
Confidence 99999 677 8999999999999999999999999999999999999986
No 4
>PLN02691 porphobilinogen deaminase
Probab=100.00 E-value=1.8e-98 Score=785.50 Aligned_cols=297 Identities=39% Similarity=0.602 Sum_probs=289.7
Q ss_pred cc-ccchHHHHHHHHHHHHHHhhCCCc----eEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEEeeCC
Q psy11425 369 IG-VEIRLAIWQAEYVRKKIIELYPWC----KVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLK 443 (672)
Q Consensus 369 v~-r~S~LAl~Q~~~v~~~l~~~~p~~----~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aVHSlK 443 (672)
|+ |+|+||+|||++|++.|++.||++ +|||++|+|+||++++.||++|||||+||||||+||++|+|||||||||
T Consensus 46 IGTR~S~LAl~Qt~~V~~~L~~~~p~~~~~~~~eiv~i~T~GD~~~d~pL~~iGgkGlFtkele~aLl~g~iDiAVHSlK 125 (351)
T PLN02691 46 IGTRGSPLALAQAYETRDLLKAAHPELAEEGALEIVIIKTTGDKILDQPLADIGGKGLFTKEIDDALLSGRIDIAVHSMK 125 (351)
T ss_pred EEeCCcHHHHHHHHHHHHHHHHhCCCcCCCCCEEEEEEeecCCccccchHHHcCCceEeHHHHHHHHHcCCCCEEEeccc
Confidence 44 999999999999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCeEEEEecCCCCCCceEEecCCCCCcCCCCCCeeecCcHHHHHHHHHhCCCCeEEcccCCHHHHHhhhcCCC
Q psy11425 444 DIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGE 523 (672)
Q Consensus 444 D~p~~~~~gl~i~a~~~R~d~~D~lv~~~~~~~~~lp~~~~iGTsS~RR~~ql~~~~p~~~~~~iRGNv~tRl~kl~~g~ 523 (672)
|||+++|+||.|+||++|+|||||||++++.+|++||+|++|||||+||++||+++|||++|++|||||||||+||++|+
T Consensus 126 DlP~~l~~gl~i~Avl~RedprDvLv~~~~~~L~~Lp~ga~IGTSS~RR~aql~~~rPdl~v~~iRGNVdTRL~KL~~ge 205 (351)
T PLN02691 126 DVPTYLPEGTILPCNLPREDVRDAFISLKAKSLAELPAGSVVGTASLRRQSQILHKYPHLKVVNFRGNVQTRLRKLQEGV 205 (351)
T ss_pred cCCCCCCCCcEEEEEcCCCCCceEEEECCCCChhHCCCCCEeccCcHHHHHHHHHHCCCCEEEeccCCHHHHHHHhcCCC
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred CCEeehhHhhHhhcCCCCceeeecCCCCCCCCCCCceEEEEEecCcHHHHHHhhccCChhhHHhHHHHHHHHHHhcCCCC
Q psy11425 524 YAAIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCK 603 (672)
Q Consensus 524 ~daiilA~Agl~Rl~~~~~~~~~l~~~~~~pa~gQGalave~r~~d~~~~~~l~~i~~~~t~~~~~aER~~l~~l~ggC~ 603 (672)
|||||||+|||+|||++++++++|+++.|+||||||+||||||++|+++.++|+.|||++|+.++.|||+||+.|||||+
T Consensus 206 yDaiILA~AGL~RLgl~~~i~~~l~~~~~~PA~gQGaLaVe~r~~d~~~~~ll~~ind~~T~~~~~aER~~L~~L~GgC~ 285 (351)
T PLN02691 206 VDATLLALAGLKRLDMTEHATSILSTDEMLPAVAQGAIGIACRTDDDKMLEYLASLNHEETRLAVACERAFLAALDGSCR 285 (351)
T ss_pred CCeeehHHHHHHhCCCcccccEecchhhcCCccccceEEEEEecCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEeccC-CCeEEEEEEEEcCCCcEEEEEEEecC--CCcHHHHHHHHHHHHHHhhHHHHHHH
Q psy11425 604 ISLAAFAMVNNFN-ESEINLRAIITNPNGLKIITAEVNGP--IDTPETVGLYAAELLKKKGAIEIIKS 668 (672)
Q Consensus 604 ~pig~~a~~~~~~-~~~~~l~~~~~~~dg~~~~~~~~~~~--~~~~~~lg~~~a~~l~~~g~~~~l~~ 668 (672)
+|||+||++ + ++++.|+|.|+++||++.+..+..++ .+++.++|..+|++|+++|+.+|+..
T Consensus 286 ~Pig~~a~~---~~~~~l~l~~~v~s~dG~~~~~~~~~g~~~~~~a~~lG~~la~~ll~~g~~~ii~~ 350 (351)
T PLN02691 286 TPIAGYARR---DKDGNCDFRGLVASPDGKQVLETSRKGPYVIDDAVAMGKDAGKELKSKAGPGFFDC 350 (351)
T ss_pred CceEEEEEE---cCCCeEEEEEEEECCCCCEEEEEEEecCCCHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 999999999 6 88999999999999999999988884 67899999999999999999999865
No 5
>PRK00072 hemC porphobilinogen deaminase; Reviewed
Probab=100.00 E-value=2.1e-98 Score=774.69 Aligned_cols=287 Identities=51% Similarity=0.832 Sum_probs=281.6
Q ss_pred cc-ccchHHHHHHHHHHHHHHhhCCCceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEEeeCCCCCC
Q psy11425 369 IG-VEIRLAIWQAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLKDIPM 447 (672)
Q Consensus 369 v~-r~S~LAl~Q~~~v~~~l~~~~p~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aVHSlKD~p~ 447 (672)
|+ |+|+||+|||++|+++|++.||+++||+++|+|+||+++++||++|||||+||||||+||++|+||||||||||||+
T Consensus 7 IGtR~S~LAl~Qt~~V~~~L~~~~p~~~~ei~~i~T~GD~~~~~~L~~iggkG~Ftkele~aLl~g~iDiAVHSlKDlP~ 86 (295)
T PRK00072 7 IGTRGSKLALWQAEWVKDRLKAAHPGLEVELVPIKTKGDKILDVPLAKIGGKGLFVKELEEALLEGEIDIAVHSLKDVPT 86 (295)
T ss_pred EEeCCCHHHHHHHHHHHHHHHHHCCCCeEEEEEeeccCcccccccHHHcCCcceeHHHHHHHHHcCCCCEEEeccCcCCC
Confidence 44 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEecCCCCCCceEEecCCCCCcCCCCCCeeecCcHHHHHHHHHhCCCCeEEcccCCHHHHHhhhcCCCCCEe
Q psy11425 448 NLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAI 527 (672)
Q Consensus 448 ~~~~gl~i~a~~~R~d~~D~lv~~~~~~~~~lp~~~~iGTsS~RR~~ql~~~~p~~~~~~iRGNv~tRl~kl~~g~~dai 527 (672)
++|+||+|+||++|+|||||||++++.++++||+|++|||||+||++||+++|||++|++|||||+|||+||++|+||||
T Consensus 87 ~l~~gl~i~avl~R~dprDvlv~~~~~~l~~Lp~ga~IGTsS~RR~aql~~~~Pdl~~~~iRGNV~TRL~KL~~g~~Dai 166 (295)
T PRK00072 87 ELPEGLVLAAIPEREDPRDALVSRDYKSLDDLPEGAVVGTSSLRRQAQLLALRPDLEIKPLRGNVDTRLRKLDEGEYDAI 166 (295)
T ss_pred CCCCCcEEEEEecCCCCceEEEECCCCChhHCCCCCEEecCcHHHHHHHHHHCcCCEEEECccCHHHHHHHhhCCCCCEe
Confidence 99999999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred ehhHhhHhhcCCCCceeeecCCCCCCCCCCCceEEEEEecCcHHHHHHhhccCChhhHHhHHHHHHHHHHhcCCCCccce
Q psy11425 528 ILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLA 607 (672)
Q Consensus 528 ilA~Agl~Rl~~~~~~~~~l~~~~~~pa~gQGalave~r~~d~~~~~~l~~i~~~~t~~~~~aER~~l~~l~ggC~~pig 607 (672)
|||+|||+|||+.+.++++|+++.|+|||||||||||||++|+++.++|+.|||++|+.++.+||+||+.|||||++|||
T Consensus 167 vLA~AGL~RLgl~~~~~~~l~~~~~~PA~gQGaiave~r~~d~~~~~~l~~i~d~~t~~~~~aER~~L~~L~ggC~~Pig 246 (295)
T PRK00072 167 ILAAAGLKRLGLEDRITEYLDPEEMLPAPGQGALGIECRADDEEILELLAPLNHEETRLRVTAERAFLRALEGGCQVPIG 246 (295)
T ss_pred ehHhhHHHHcCCccccceecChhhcCCcccccceeeeeecCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccCCCeEEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHH
Q psy11425 608 AFAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLK 658 (672)
Q Consensus 608 ~~a~~~~~~~~~~~l~~~~~~~dg~~~~~~~~~~~~~~~~~lg~~~a~~l~ 658 (672)
|||++ +++++.|+|.|+++||++.++.+..++.+++.++|.++|++|+
T Consensus 247 ~~a~~---~~~~l~l~~~v~~~dg~~~~~~~~~~~~~~~~~lg~~la~~l~ 294 (295)
T PRK00072 247 AYAEL---EGDELRLRGLVGSPDGSEIIRAEIEGPAADAEELGIELAEELL 294 (295)
T ss_pred eEEEE---eCCEEEEEEEEECCCCCEEEEEEEecCHHhHHHHHHHHHHHHh
Confidence 99999 7889999999999999999999888998999999999999886
No 6
>KOG2892|consensus
Probab=100.00 E-value=5.1e-85 Score=648.44 Aligned_cols=295 Identities=42% Similarity=0.646 Sum_probs=278.2
Q ss_pred ccchHHHHHHHHHHHHHHhhCCCceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEEeeCCCCCCCCC
Q psy11425 371 VEIRLAIWQAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLKDIPMNLP 450 (672)
Q Consensus 371 r~S~LAl~Q~~~v~~~l~~~~p~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aVHSlKD~p~~~~ 450 (672)
|+|+||++|+++|+..|++.||+++|+|.+++|+||+++++||++||+|++||||||++|.+|.+||+|||||||||.+|
T Consensus 13 RKSkLAvIQs~~v~~~Lek~YP~l~f~I~t~~T~GDkIl~k~L~~ig~KsLfTkELE~aL~~~~~divVHSLKDlPT~LP 92 (320)
T KOG2892|consen 13 RKSKLAVIQSYHVREKLEKKYPELAFEIITMSTTGDKILSKPLAKIGGKSLFTKELEDALINGHVDIVVHSLKDLPTYLP 92 (320)
T ss_pred cccchhhhhHHHHHHHHHhhCCCceeEEEEecccchHHhhchHhhhcccchhHHHHHHHHhcCCccEEEEecccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCCCceEEecC---CCCCcCCCCCCeeecCcHHHHHHHHHhCCCCeEEcccCCHHHHHhhhcCCC-CCE
Q psy11425 451 SGFILCAILKREDPRDAFISND---YISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGE-YAA 526 (672)
Q Consensus 451 ~gl~i~a~~~R~d~~D~lv~~~---~~~~~~lp~~~~iGTsS~RR~~ql~~~~p~~~~~~iRGNv~tRl~kl~~g~-~da 526 (672)
+|+.|+||+||+||+|+||++. |+++++||+|++|||||+||+|||++.||+|+|+++|||++|||+||+.+. |.|
T Consensus 93 ~G~~ig~i~kRedp~DalV~~~~s~~kTladLP~GsVVGTSSlRR~Aql~RkyPHL~f~~~rgn~~trl~kld~~~~~~~ 172 (320)
T KOG2892|consen 93 EGMIIGCILKREDPRDALVFLTYSAYKTLADLPAGSVVGTSSLRRKAQILRKYPHLHVESIRGNLQTRLSKLDGGKPFQA 172 (320)
T ss_pred CCcEeccccCCCCccceEEEecccccccHhhCCCCceechHHHhHHHHHHhhCCceEEEEecChHHHHHHhhcCCCcchh
Confidence 9999999999999999999987 789999999999999999999999999999999999999999999999998 999
Q ss_pred eehhHhhHhhcCCCCceeeecCCCCCCCCCCCceEEEEEecCcHHHHHHhhccCChhhHHhHHHHHHHHHHhcCCCCccc
Q psy11425 527 IILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISL 606 (672)
Q Consensus 527 iilA~Agl~Rl~~~~~~~~~l~~~~~~pa~gQGalave~r~~d~~~~~~l~~i~~~~t~~~~~aER~~l~~l~ggC~~pi 606 (672)
||||.|||+|+||.+++.+.|.|++|+||+||||++||||.||..+..++..+||.+|..|+.+||+||+.|||||++||
T Consensus 173 iilA~agl~rmg~~~ri~qil~p~~~~~avgqgalgie~r~~d~~m~~~l~~l~~~~t~~~~~~eraflrtl~Ggcs~pi 252 (320)
T KOG2892|consen 173 IILALAGLKRMGWTNRIAQILHPDEMLYAVGQGALGIECRADDDKMLTYLASLNDLNTTLRILAERAFLRTLEGGCSVPI 252 (320)
T ss_pred HHHHHHHHHHhhhHhHHHHhcChHHHHHHhccceeEEEEecChHHHHHHHHHhcChHHHHHHHHHHHHHHhhCCCccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCeEEEEEEEEcCCCcEEEEEEEecCCCcH--HHH-HHHHHHHHHHhhHHHHHHH
Q psy11425 607 AAFAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTP--ETV-GLYAAELLKKKGAIEIIKS 668 (672)
Q Consensus 607 g~~a~~~~~~~~~~~l~~~~~~~dg~~~~~~~~~~~~~~~--~~l-g~~~a~~l~~~g~~~~l~~ 668 (672)
++|+.. +++++.|+|.|+|+||++.+..+..+++.+- ... |..++..|.+.++..+..+
T Consensus 253 av~s~~---~~g~l~L~g~v~s~dg~~~i~~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~~~~ 314 (320)
T KOG2892|consen 253 AVYSSK---KEGNLILTGLVWSLDGTKVIETSRKGPIVYEKMVKMGGKEAGQQLLSRTAPGIFGN 314 (320)
T ss_pred eeEeec---cCCcEEEEeeEeccccchHHHHHhhcchhhhhhhhhccccccHHHHhhccCCCCCc
Confidence 999999 6677999999999999999988887765431 223 4667777777776655443
No 7
>PF01379 Porphobil_deam: Porphobilinogen deaminase, dipyromethane cofactor binding domain; InterPro: IPR022417 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. Porphobilinogen deaminase (also known as hydroxymethylbilane synthase, 2.5.1.61 from EC) functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the polymerisation of four PBG molecules into the tetrapyrrole structure, preuroporphyrinogen, with the concomitant release of four molecules of ammonia. This enzyme uses a unique dipyrro-methane cofactor made from two molecules of PBG, which is covalently attached to a cysteine side chain. The tetrapyrrole product is synthesized in an ordered, sequential fashion, by initial attachment of the first pyrrole unit (ring A) to the cofactor, followed by subsequent additions of the remaining pyrrole units (rings B, C, D) to the growing pyrrole chain []. The link between the pyrrole ring and the cofactor is broken once all the pyrroles have been added. This enzyme is folded into three distinct domains that enclose a single, large active site that makes use of an aspartic acid as its one essential catalytic residue, acting as a general acid/base during catalysis [, ]. A deficiency of hydroxymethylbilane synthase is implicated in the neuropathic disease, Acute Intermittent Porphyria (AIP) []. This entry represents the N-terminal domains 1 and 2 of porphobilinogen deaminase, an enzyme involved in tetrapyrrole biosynthesis. The structure of this domain consists of a duplication of two similar intertwined domains with three layers of (a/b/a) each. Porphobilinogen deaminase has a three-domain structure. Domains 1 (N-terminal) and 2 are duplications with the same structure, resembling the transferrins and periplasmic binding proteins. The dipyrromethane cofactor is covalently linked to domain 3 (C-terminal), but is bound by extensive salt-bridges and hydrogen-bonds within the cleft between domains 1 and 2, at a position corresponding to the binding sites for small-molecule ligands in the analogous proteins []. The enzyme has a single catalytic site, and the flexibility between domains is thought to aid elongation of the polypyrrole product in the active-site cleft of the enzyme.; GO: 0033014 tetrapyrrole biosynthetic process; PDB: 1GTK_A 1AH5_A 2YPN_A 1PDA_A 1YPN_A 3EQ1_B 3ECR_A.
Probab=100.00 E-value=1.1e-79 Score=608.93 Aligned_cols=209 Identities=52% Similarity=0.828 Sum_probs=164.8
Q ss_pred cc-ccchHHHHHHHHHHHHHHhhCCCceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEEeeCCCCCC
Q psy11425 369 IG-VEIRLAIWQAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLKDIPM 447 (672)
Q Consensus 369 v~-r~S~LAl~Q~~~v~~~l~~~~p~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aVHSlKD~p~ 447 (672)
|+ |+|+||+|||++|+++|++.||+++||+++|+|+||++++.||+++||||+||||||+||++|+||+|||||||||+
T Consensus 4 IGtR~S~LAl~Qa~~V~~~L~~~~P~~~~ei~~i~T~GD~~~~~~L~~~ggkg~Ftkele~aLl~g~iDiAVHSlKDlP~ 83 (215)
T PF01379_consen 4 IGTRGSKLALAQAEMVIDRLKKAFPDLEFEIVTIKTTGDRDLDRPLSKIGGKGLFTKELEEALLDGEIDIAVHSLKDLPT 83 (215)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHSTTSEEEEEEE--CCHH--------TT--HCCCHHHHHHHHTTS-SEEEEEGGGS-S
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhCCCceEEEEEccCCCCcccccchhhcCCccHHHHHHHHHHHcCCccEEEeccccCCC
Confidence 44 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEecCCCCCCceEEe--cCCCCCcCCCCCCeeecCcHHHHHHHHHhCCCCeEEcccCCHHHHHhhhcCCCCC
Q psy11425 448 NLPSGFILCAILKREDPRDAFIS--NDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYA 525 (672)
Q Consensus 448 ~~~~gl~i~a~~~R~d~~D~lv~--~~~~~~~~lp~~~~iGTsS~RR~~ql~~~~p~~~~~~iRGNv~tRl~kl~~g~~d 525 (672)
++|+||.|+||++|+|||||||+ +++.++++||+|++|||||+||++||+++|||++|++|||||+|||+||++|+||
T Consensus 84 ~l~~gl~iaav~~R~dprD~Lv~~~~~~~~l~~Lp~ga~IGTsS~RR~aql~~~~pdl~~~~iRGNv~TRL~KL~~g~~d 163 (215)
T PF01379_consen 84 ELPEGLVIAAVLKREDPRDVLVSRGRDGKSLEDLPKGARIGTSSLRRRAQLKRLRPDLEVVPIRGNVDTRLRKLDEGEYD 163 (215)
T ss_dssp S--TTEEEEEE-------EEEEE-GCTTSSCCCS-TT-EEE---HHHHHHHHHH-TTSEEE---S-HHHHHHHHHCTS-S
T ss_pred CCCCCceEeccCCCCCCccEEEEecCCCCChHHCccccccCCCCHHHHHHHHHhccCCeEEEecCCHHHHHHHhcccCCC
Confidence 99999999999999999999999 5688999999999999999999999999999999999999999999999999999
Q ss_pred EeehhHhhHhhcCCCCceeeecCCCCCCCCCCCceEEEEEecCcHHHHHHhh
Q psy11425 526 AIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLI 577 (672)
Q Consensus 526 aiilA~Agl~Rl~~~~~~~~~l~~~~~~pa~gQGalave~r~~d~~~~~~l~ 577 (672)
|||||+|||+|||+.++++++|+++.|+|||||||||||||++|.++.++|+
T Consensus 164 aiiLA~AGL~RLgl~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~llK 215 (215)
T PF01379_consen 164 AIILAAAGLKRLGLEDRISEILDPEEMLPAPGQGALAVECRKDDEEIIELLK 215 (215)
T ss_dssp EEEEEHHHHHHCT-GGGESEEE-TTTS-B-TTTT-EEEEEETT-HHHHHHH-
T ss_pred EEEhhhChhhhccccceeeeecCchhcCCCCCCeEEEEEEecCcHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999985
No 8
>PRK01066 porphobilinogen deaminase; Provisional
Probab=100.00 E-value=5.2e-79 Score=604.78 Aligned_cols=211 Identities=31% Similarity=0.481 Sum_probs=206.0
Q ss_pred Ccc-ccchHHHHHHHHHHHHHHhhCCCceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEEeeCCCCC
Q psy11425 368 KIG-VEIRLAIWQAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLKDIP 446 (672)
Q Consensus 368 ~v~-r~S~LAl~Q~~~v~~~l~~~~p~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aVHSlKD~p 446 (672)
+|+ |+|+||+|||++|++.|++.||+++|||++|+|+||++++.||+++||||+||||||+||++|+||||||||||||
T Consensus 19 rIgTR~S~LAl~Qa~~v~~~L~~~~p~~~~ei~~i~T~GD~~~~~~L~~iGgkGlFtkele~aLl~g~iDiAVHSlKDlP 98 (231)
T PRK01066 19 RIASRQSSLAVAQVHECLRLLRSFFPKLWFQISTTTTQGDLDQKTPLHLVENTGFFTDDVDFLVLSGQCDLAIHSAKDLP 98 (231)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEeccCcccccccHHHcCCceeeHHHHHHHHHcCCCCEEEecCCcCC
Confidence 345 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEecCCCCCCceEEecCCCCCcCCCCCCeeecCcHHHHHHHHHhCCCCeEEcccCCHHHHHhhhcCCCCCE
Q psy11425 447 MNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAA 526 (672)
Q Consensus 447 ~~~~~gl~i~a~~~R~d~~D~lv~~~~~~~~~lp~~~~iGTsS~RR~~ql~~~~p~~~~~~iRGNv~tRl~kl~~g~~da 526 (672)
+ |+||+|+||++|+|||||||++++.++.+||+|++|||||+||++||+++|||++|++|||||+|||+||++|+|||
T Consensus 99 t--~~gl~l~av~~RedprDvLv~~~~~~l~~Lp~ga~IGTSS~RR~aql~~~rPdl~v~~iRGNV~TRL~KL~~ge~Da 176 (231)
T PRK01066 99 E--PPKLTVVAITAGLDPRDLLVYAEKYLSQPLPRRPRIGSSSLRREELLKLLFPSGIILDIRGTIEERLKLLEEKKYDA 176 (231)
T ss_pred C--CCCCEEEEEcCCCCCceEEEECCCCchhhCCCCCEEeCChHHHHHHHHHHCCCCEEEeCcCCHHHHHHHhcCCCCCc
Confidence 9 99999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred eehhHhhHhhcCCCCceeeecCCCCCCCCCCCceEEEEEecCcHHHHHHhhccCChh
Q psy11425 527 IILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYF 583 (672)
Q Consensus 527 iilA~Agl~Rl~~~~~~~~~l~~~~~~pa~gQGalave~r~~d~~~~~~l~~i~~~~ 583 (672)
||||+|||+|||+.++++++|+++ |||||||||||||++|+++.++|+.|||.+
T Consensus 177 iiLA~AGL~RLgl~~~~~~~l~~~---~A~gQGalaie~R~~d~~~~~ll~~i~~~~ 230 (231)
T PRK01066 177 IVVAKAAVLRLGLRLPYTKELPPP---YHPLQGRLAITASKHIRSWKGLFLPLGITE 230 (231)
T ss_pred hhhHHHHHHhcCCcccceeECCCC---CCCCCCeEEEEEecCCHHHHHHHHHhcCCC
Confidence 999999999999999999999998 499999999999999999999999999975
No 9
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.3e-42 Score=332.63 Aligned_cols=185 Identities=51% Similarity=0.859 Sum_probs=180.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGT 205 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt 205 (672)
++++|+|+||||+|||||.+.|.+.. .+.+++++|||+||+||++|++|||+|+++|.+++..++|+||.+|+||+|||
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT 81 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGT 81 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccC
Confidence 68899999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcCCCc
Q psy11425 206 SFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFD 285 (672)
Q Consensus 206 ~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~~~~D 285 (672)
+...+...++.|++|+++++.+|+.++++.+++.+.|||.|||.+++++||..||.++++.|.+||..+..|+.+...||
T Consensus 82 ~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~~~~~fd 161 (191)
T COG0194 82 SREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKKEISHADEFD 161 (191)
T ss_pred cHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccccc
Q psy11425 286 YIIINNKFSKALLQLKAIINANRCFM 311 (672)
Q Consensus 286 ~VI~Nddle~a~~qL~~iI~~~~~~m 311 (672)
|||+|+|++.++.+|..+|..+++++
T Consensus 162 yvivNdd~e~a~~~l~~ii~aer~~~ 187 (191)
T COG0194 162 YVIVNDDLEKALEELKSIILAERLRR 187 (191)
T ss_pred EEEECccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998886554
No 10
>PRK14737 gmk guanylate kinase; Provisional
Probab=100.00 E-value=1.7e-38 Score=313.87 Aligned_cols=182 Identities=45% Similarity=0.738 Sum_probs=174.3
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGT 205 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt 205 (672)
.+++|+|+||||||||||++.|.+.+|.+.++++||||+||++|.+|++|||+|+++|..++.+|.|+||++|+|++|||
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt 82 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGT 82 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecC
Confidence 57899999999999999999999998888889999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCc-EEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcCCC
Q psy11425 206 SFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNA-IGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKF 284 (672)
Q Consensus 206 ~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~-~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~~~~ 284 (672)
+.++|...+++|++||++++++|+..++..+++. ++|||.|||.+++.+|+..|+..++++++.|+.++..+..+.+.|
T Consensus 83 ~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~~~~~~~ 162 (186)
T PRK14737 83 PKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIELDEANEF 162 (186)
T ss_pred cHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999999999999999988876 789999999999999999999999999999999999889999999
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhc
Q psy11425 285 DYIIINNKFSKALLQLKAIINAN 307 (672)
Q Consensus 285 D~VI~Nddle~a~~qL~~iI~~~ 307 (672)
|+||+|+|+++++.+|..+|...
T Consensus 163 D~vI~N~dle~a~~ql~~ii~~~ 185 (186)
T PRK14737 163 DYKIINDDLEDAIADLEAIICGK 185 (186)
T ss_pred CEEEECcCHHHHHHHHHHHHhcC
Confidence 99999999999999999998653
No 11
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=100.00 E-value=1.4e-34 Score=285.66 Aligned_cols=181 Identities=41% Similarity=0.649 Sum_probs=172.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCC-CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGT 205 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt 205 (672)
+++|+|+|||||||+||++.|.+.+| .|.++++||||++|++|.+|.+|+|+++++|..+++.|.|++|+++++++||+
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 57999999999999999999999987 79999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcCCCc
Q psy11425 206 SFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFD 285 (672)
Q Consensus 206 ~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~~~~D 285 (672)
++..+...+++|++||++++++++..+++.++++++|||.|||.+++++||..|++++.+.+.+|+..+..+....+.||
T Consensus 82 ~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~~~~~fd 161 (184)
T smart00072 82 SKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQEYHLFD 161 (184)
T ss_pred CHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877776668899
Q ss_pred EEEEcCCHHHHHHHHHHHHHhc
Q psy11425 286 YIIINNKFSKALLQLKAIINAN 307 (672)
Q Consensus 286 ~VI~Nddle~a~~qL~~iI~~~ 307 (672)
++|+|+|+++++.+|.++|.+.
T Consensus 162 ~~I~n~~l~~~~~~l~~~i~~~ 183 (184)
T smart00072 162 YVIVNDDLEDAYEELKEILEAE 183 (184)
T ss_pred EEEECcCHHHHHHHHHHHHHhc
Confidence 9999999999999999999763
No 12
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=100.00 E-value=3e-35 Score=289.96 Aligned_cols=181 Identities=40% Similarity=0.657 Sum_probs=167.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCC-CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYG 204 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YG 204 (672)
++++|+|+|||||||+||++.|.+.+| .|..+++||||+||++|.+|.+|||+++++|.+++..|+|++|++++|++||
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG 80 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG 80 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence 368999999999999999999999987 6889999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcCCC
Q psy11425 205 TSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKF 284 (672)
Q Consensus 205 t~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~~~~ 284 (672)
++..+|..++++|++|+++++++++..+++...+|++|||.|||.+.+.+|+..|+.++.+.+..|+.....++.+...|
T Consensus 81 t~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~~~~~~~~~~f 160 (183)
T PF00625_consen 81 TSKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERAEKEFEHYNEF 160 (183)
T ss_dssp EEHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHHHHHHGGGGGS
T ss_pred hccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHHHHHHhHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999887888999998888777776669
Q ss_pred cEEEEcCCHHHHHHHHHHHHHh
Q psy11425 285 DYIIINNKFSKALLQLKAIINA 306 (672)
Q Consensus 285 D~VI~Nddle~a~~qL~~iI~~ 306 (672)
|+||.|+++++++.+|.++|++
T Consensus 161 d~vi~n~~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 161 DYVIVNDDLEEAVKELKEIIEQ 182 (183)
T ss_dssp SEEEECSSHHHHHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHHh
Confidence 9999999999999999999986
No 13
>PLN02772 guanylate kinase
Probab=100.00 E-value=8.3e-33 Score=296.41 Aligned_cols=185 Identities=37% Similarity=0.561 Sum_probs=173.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCC-CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYG 204 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YG 204 (672)
..++|+|+|||||||+||++.|.+.+| .+.++++||||+||++|.+|.+|+|+++++|.+++.+|.|+||++++|++||
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG 213 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG 213 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence 567999999999999999999998876 5889999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhh---c
Q psy11425 205 TSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISY---A 281 (672)
Q Consensus 205 t~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~---~ 281 (672)
|+++.+..++++|++||+++++++.+.+++..+++++||+.|||.+++++||..|+..+++.+++|+..+..++.. .
T Consensus 214 Tsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~l~~v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL~~A~~Ei~~~~~~ 293 (398)
T PLN02772 214 TSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAIFIFICPPSMEELEKRLRARGTETEEQIQKRLRNAEAELEQGKSS 293 (398)
T ss_pred ccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999998888999999999999999999999999999999999998766654 5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHhcccc
Q psy11425 282 NKFDYIIINNKFSKALLQLKAIINANRCF 310 (672)
Q Consensus 282 ~~~D~VI~Nddle~a~~qL~~iI~~~~~~ 310 (672)
+.||++|+|+|+++++++|.++|....|.
T Consensus 294 ~~fD~vIvNDdLe~A~~~L~~iL~~~~~~ 322 (398)
T PLN02772 294 GIFDHILYNDNLEECYKNLKKLLGLDGLA 322 (398)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHhhcCcc
Confidence 68999999999999999999999765543
No 14
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.97 E-value=1.5e-30 Score=261.57 Aligned_cols=188 Identities=34% Similarity=0.655 Sum_probs=173.4
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhcccc
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFY 203 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~Y 203 (672)
+.++++|+|+||||||||||++.|.+.++.+.+++++|||++|++|.+|.+|||+++++|..++.+|.|++|+++++++|
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~Y 89 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYY 89 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCcee
Confidence 45688999999999999999999998877899999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcCC
Q psy11425 204 GTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANK 283 (672)
Q Consensus 204 Gt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~~~ 283 (672)
||++..+...+++|++||++++++++..+++..++.++||+.||+.+++.+|+..|+.++.+.+.+|+.....++.....
T Consensus 90 Gt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~~~~e~~~~~~ 169 (206)
T PRK14738 90 GVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATAPLELEQLPE 169 (206)
T ss_pred cCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcccC
Confidence 99999999999999999999999999999998889899999999999999999999988888999999888777766667
Q ss_pred CcEEEEcC--CHHHHHHHHHHHHHhccccc
Q psy11425 284 FDYIIINN--KFSKALLQLKAIINANRCFM 311 (672)
Q Consensus 284 ~D~VI~Nd--dle~a~~qL~~iI~~~~~~m 311 (672)
+|++++|. ++++++++|..+|....+.+
T Consensus 170 ~~~~iId~~~~~e~v~~~i~~~l~~~~~~~ 199 (206)
T PRK14738 170 FDYVVVNPEDRLDEAVAQIMAIISAEKSRV 199 (206)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHhccc
Confidence 89999996 69999999999998775543
No 15
>KOG0609|consensus
Probab=99.97 E-value=3.8e-30 Score=278.26 Aligned_cols=202 Identities=28% Similarity=0.380 Sum_probs=182.7
Q ss_pred hhhhhhccccccceEEEEeCCCCCChHHHHHHHHhcCC-CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCch
Q psy11425 115 RHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFL 193 (672)
Q Consensus 115 ~~E~~~r~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fl 193 (672)
-||.+.+..+..++.+||+|++|+|...|.+.|....| .|..+++||||++|++|.+|.+|||+|+++|..++++|+|+
T Consensus 328 tYEEV~~~~~~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~l 407 (542)
T KOG0609|consen 328 TYEEVVRYPPFRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFL 407 (542)
T ss_pred cHHHHhhhcccccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceeeehHHHhhhhhcCCce
Confidence 48888888888889999999999999999999999987 79999999999999999999999999999999999999999
Q ss_pred hHHhHhccccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcC-------CCCHHH
Q psy11425 194 EWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRG-------QDKYDV 266 (672)
Q Consensus 194 e~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg-------~~~~e~ 266 (672)
||++|.+++|||+.+++..++..|++|++|+.|+.++.++...+.|++|||.||+.+.+.+-...-. ..++++
T Consensus 408 E~GEy~~nlYGTs~dsVr~v~~~gKicvLdv~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~r~~~~~~~~~~~~~~d~~ 487 (542)
T KOG0609|consen 408 EYGEYEGNLYGTSLDSVRNVIASGKICVLDVEPQALKVLRTAEFKPYVIFIAPPSLEELRALRKVAVMSTIVAKQFTDED 487 (542)
T ss_pred ecCcchhccccchHHHHHHHHHhCCEEEEecCHHHhhhhhhhcccceEEEecCCCchhHHHHhhhccccccccccCCHHH
Confidence 9999999999999999999999999999999999999999999999999999998887755333221 245677
Q ss_pred HHHHHHH-HHHHhhhcCCCcEEEEcCCHHHHHHHHHHHHHhcccccccccc
Q psy11425 267 ISRRILS-ANKEISYANKFDYIIINNKFSKALLQLKAIINANRCFMARVTI 316 (672)
Q Consensus 267 i~~rl~~-~~~e~~~~~~~D~VI~Nddle~a~~qL~~iI~~~~~~m~r~~~ 316 (672)
+++.+.. +.++..|+++||.+|+|+|+++++++|+.+|++.+-...|+|+
T Consensus 488 Lq~i~~eS~~ie~~yghyfD~iIvN~dld~t~~eL~~~iekl~tepqWVPv 538 (542)
T KOG0609|consen 488 LQEIIDESARIEQQYGHYFDLIIVNSDLDKTFRELKTAIEKLRTEPQWVPV 538 (542)
T ss_pred HHHHHHHHHHHHHHhhhheeEEEEcCcHHHHHHHHHHHHHHhccCCceeee
Confidence 7776644 5778899999999999999999999999999988877777765
No 16
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.95 E-value=1.6e-27 Score=233.50 Aligned_cols=179 Identities=54% Similarity=0.930 Sum_probs=169.0
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTS 206 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~ 206 (672)
+++|+|+|||||||||+++.|.+..+.+...+++|||+|+.++.+|.+|+|++.+.|..++..++|+++..+.++.||++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 80 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP 80 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence 47899999999999999999999887788888999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcCCCcE
Q psy11425 207 FFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDY 286 (672)
Q Consensus 207 ~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~~~~D~ 286 (672)
...+...+++|++||+|+++.++..+++.++++..||+.+++.+.+++|+..|+.++.+.+.+|+.++..++.+.+.||+
T Consensus 81 ~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~~~~~~~~~~d~ 160 (180)
T TIGR03263 81 KSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEIAHADEFDY 160 (180)
T ss_pred HHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccccCcE
Confidence 99999999999999999999999999998888888999999999999999999998889999999999888888889999
Q ss_pred EEEcCCHHHHHHHHHHHHH
Q psy11425 287 IIINNKFSKALLQLKAIIN 305 (672)
Q Consensus 287 VI~Nddle~a~~qL~~iI~ 305 (672)
+|.|+|+++++++|..++.
T Consensus 161 ~i~n~~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 161 VIVNDDLEKAVEELKSIIL 179 (180)
T ss_pred EEECCCHHHHHHHHHHHHh
Confidence 9999999999999999874
No 17
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.95 E-value=4.7e-27 Score=235.07 Aligned_cols=185 Identities=50% Similarity=0.890 Sum_probs=173.5
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYG 204 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YG 204 (672)
.++.+|+|+||||||||||++.|...++.++..+++|||+|+.++.+|.+|+|++.++|..++..+.|++++++.++.||
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 82 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYG 82 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCcccc
Confidence 46789999999999999999999998877888999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcCCC
Q psy11425 205 TSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKF 284 (672)
Q Consensus 205 t~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~~~~ 284 (672)
++...+...+..|..||+++++.+...+++.++++++||+.+++.+++.+|+..|+.++++.+++|+.++..+..+.+.|
T Consensus 83 ~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~ 162 (205)
T PRK00300 83 TPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKAREEIAHASEY 162 (205)
T ss_pred CcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHhC
Confidence 99999999999999999999999999999988888889999999999999999999989999999999988888777889
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccc
Q psy11425 285 DYIIINNKFSKALLQLKAIINANRC 309 (672)
Q Consensus 285 D~VI~Nddle~a~~qL~~iI~~~~~ 309 (672)
|++|+|+++++++.+|..++.....
T Consensus 163 d~vi~n~~~e~~~~~l~~il~~~~~ 187 (205)
T PRK00300 163 DYVIVNDDLDTALEELKAIIRAERL 187 (205)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987643
No 18
>KOG0707|consensus
Probab=99.95 E-value=1.5e-27 Score=236.87 Aligned_cols=185 Identities=35% Similarity=0.577 Sum_probs=172.7
Q ss_pred cccc-eEEEEeCCCCCChHHHHHHHHhcCCC-ceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhcc
Q psy11425 124 KSFG-NIFIISAPSGAGKSTLVNELLKKDHK-IKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGN 201 (672)
Q Consensus 124 ~~~~-kiIvLtGpsGSGKSTLa~~L~e~~~~-~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~ 201 (672)
+++. +.|+|+||+|+||+|+.++|.+.++. ++++++||||.||.+|.+|.+|||++.++|..++..+.|+||+.+.++
T Consensus 33 ~p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn 112 (231)
T KOG0707|consen 33 PPGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGN 112 (231)
T ss_pred CCCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcc
Confidence 3444 89999999999999999999999874 899999999999999999999999999999999999999999999999
Q ss_pred ccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhc
Q psy11425 202 FYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYA 281 (672)
Q Consensus 202 ~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~ 281 (672)
+||++++.+++....|+.|+++++.+|.+.++...+++++||+.||+...+++||..|+.++.+++.+|+.++..++.+.
T Consensus 113 ~yGtsi~av~~~~~~gk~~ildId~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~sa~~e~~~~ 192 (231)
T KOG0707|consen 113 KYGTSIAAVQRLMLSGKVCILDIDLQGVQPIRATSLDAIYIFIKPPSIKILEERLRARGTETEESLLKRLKSAEEEFEIL 192 (231)
T ss_pred cCCchHHHHHHHHhcCCcceeehhhcCceeeecCCCceEEEEecCCcchhHHHHhhccCcchHHHHHHHHHhhhhhhccc
Confidence 99999999999999999999999999999999989999999999999999999999999999999999999888888777
Q ss_pred CC---CcEEEEc-CCHHHHHHHHHHHHHhcc
Q psy11425 282 NK---FDYIIIN-NKFSKALLQLKAIINANR 308 (672)
Q Consensus 282 ~~---~D~VI~N-ddle~a~~qL~~iI~~~~ 308 (672)
.. ||++|+| +++++++.++..++....
T Consensus 193 ~~~g~~d~~~~ns~~lee~~kel~~~~~~~~ 223 (231)
T KOG0707|consen 193 ENSGSFDLVIVNSDRLEEAYKELEIFISSDD 223 (231)
T ss_pred cCCccccceecCCCchhhhhhhhhhhhhHHH
Confidence 65 9999999 789999999999886543
No 19
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=99.94 E-value=2.7e-26 Score=217.51 Aligned_cols=123 Identities=40% Similarity=0.687 Sum_probs=114.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11425 1 MSEKDYMNEEQLAFFKFRLKKLENDLLKNIVKTTEYLRE-TILVPDPADRATIEEENTLELRARDRERKLLIKIQQSIIN 79 (672)
Q Consensus 1 ~~~~~~mt~~ql~~~r~~L~~~~~el~~~l~~~~~~~~~-~~~~~d~~D~a~~~~~~~~~~~~~~~~~~~l~~i~~Al~r 79 (672)
|+++.||++.|+++||++|++++++|.+++......+.+ ....+|.+|.++...++.+.+++.++++.+|.+|++||.|
T Consensus 26 ~~~~~yM~~~ql~~fr~~L~~~r~eL~~~i~~~~~~~~~~~~~~~D~~D~a~~~~~~~~~l~~~~r~~~~L~~I~~AL~R 105 (151)
T PRK10778 26 KPGEEYMNEAQLAHFKRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKK 105 (151)
T ss_pred CchhhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999888776664 3456899999999999999999999999999999999999
Q ss_pred cccCCCCCcCccCCcchhhhhhhCCCccchhHHhhhhhhhhccc
Q psy11425 80 IDKKEYGWCKDTGEPIGILRLLAKPMATLSLEAQQRHELKKKSF 123 (672)
Q Consensus 80 i~~gtyG~C~~Cge~Ip~~RL~a~P~a~~C~~c~~~~E~~~r~~ 123 (672)
|++|+||+|++||+|||.+||+|+|||++|++||+..|+..+++
T Consensus 106 i~~gtYG~Ce~CGe~I~~~RL~A~P~A~~CI~CQe~~E~~~~~~ 149 (151)
T PRK10778 106 VEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQM 149 (151)
T ss_pred HhCCCCceeccCCCcccHHHHhcCCCccccHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999887765
No 20
>COG1734 DksA DnaK suppressor protein [Signal transduction mechanisms]
Probab=99.92 E-value=2.8e-25 Score=201.43 Aligned_cols=117 Identities=50% Similarity=0.728 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q psy11425 7 MNEEQLAFFKFRLKKLENDLLKNIVKTTEYLRE-TILVPDPADRATIEEENTLELRARDRERKLLIKIQQSIINIDKKEY 85 (672)
Q Consensus 7 mt~~ql~~~r~~L~~~~~el~~~l~~~~~~~~~-~~~~~d~~D~a~~~~~~~~~~~~~~~~~~~l~~i~~Al~ri~~gty 85 (672)
|+++|+++||++|.+++.++..++......... ...++|.+|.|+..+++.+.+++..+++..|.+|+.||.||++|||
T Consensus 1 m~~~~~~~fk~~L~~~k~~l~~~~~~~~~~~~~~~~~~~d~aD~a~~~~~~~~~~~~~~r~r~~l~~i~~al~rIe~gtY 80 (120)
T COG1734 1 MNKEQLEHFKNKLLEWKKDLLEELEQTEEHLQDENEASPDPADRATQEEERELELRLRDRERKLLRKIESALDRIEEGTY 80 (120)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 899999999999999999999999998887764 5667889999999999999999999999999999999999999999
Q ss_pred CCcCccCCcchhhhhhhCCCccchhHHhhhhhhhhccc
Q psy11425 86 GWCKDTGEPIGILRLLAKPMATLSLEAQQRHELKKKSF 123 (672)
Q Consensus 86 G~C~~Cge~Ip~~RL~a~P~a~~C~~c~~~~E~~~r~~ 123 (672)
|+|++||+|||.+||.|+|+|++|++||+..|...+++
T Consensus 81 G~Ce~cG~~Ip~~RL~A~P~A~~Ci~cQ~~~E~~~k~~ 118 (120)
T COG1734 81 GICEECGEPIPEARLEARPTARLCIECQERAERREKQR 118 (120)
T ss_pred cchhccCCcCCHHHHhhCcchHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999988654
No 21
>TIGR02420 dksA RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage.
Probab=99.92 E-value=4.4e-25 Score=199.75 Aligned_cols=109 Identities=49% Similarity=0.755 Sum_probs=102.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q psy11425 7 MNEEQLAFFKFRLKKLENDLLKNIVKTTEYLRE-TILVPDPADRATIEEENTLELRARDRERKLLIKIQQSIINIDKKEY 85 (672)
Q Consensus 7 mt~~ql~~~r~~L~~~~~el~~~l~~~~~~~~~-~~~~~d~~D~a~~~~~~~~~~~~~~~~~~~l~~i~~Al~ri~~gty 85 (672)
|+++|+++||++|++++.+|..++......... +....|++|.++...++.+.+++.++++.+|.+|++||.||+.|+|
T Consensus 1 M~~~~l~~~k~~L~~~~~~L~~~i~~~~~~~~~~~~~~~d~~D~a~~~~~~~~~~~~~~~~~~~l~~i~~AL~ri~~g~y 80 (110)
T TIGR02420 1 MSEAQLEHFRKILLRWKQELLEEADKTLEHLQEESENFPDPADRATQEEERALELRTRDRERKLIKKIDEALKRIEDGEY 80 (110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 899999999999999999999999988777655 4567899999999999999999999999999999999999999999
Q ss_pred CCcCccCCcchhhhhhhCCCccchhHHhhh
Q psy11425 86 GWCKDTGEPIGILRLLAKPMATLSLEAQQR 115 (672)
Q Consensus 86 G~C~~Cge~Ip~~RL~a~P~a~~C~~c~~~ 115 (672)
|+|++||+|||++||+|+|||++|++||+.
T Consensus 81 G~C~~Cge~I~~~RL~a~P~a~~Cv~Cq~~ 110 (110)
T TIGR02420 81 GYCEECGEEIGLRRLEARPTATLCIDCKTL 110 (110)
T ss_pred CchhccCCcccHHHHhhCCCccccHHhHcc
Confidence 999999999999999999999999999963
No 22
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.90 E-value=9.7e-24 Score=198.71 Aligned_cols=135 Identities=47% Similarity=0.875 Sum_probs=128.8
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCC-CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcch
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSF 207 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~ 207 (672)
+|+|+||||||||||++.|.+.++ .+..++++|||+|++++.+|.+|+|++..+|.+++..+.|++|+++++++||++.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~ 80 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence 489999999999999999999865 6788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcCCCcEE
Q psy11425 208 FPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYI 287 (672)
Q Consensus 208 ~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~~~~D~V 287 (672)
+.+...+++|+++|++++++++..++..++++++|||.|| |+|
T Consensus 81 ~~i~~~~~~g~~~il~~~~~~~~~l~~~~~~~~~I~i~~~-------------------------------------~~~ 123 (137)
T cd00071 81 AAVEEALAEGKIVILEIDVQGARQVKKSYPDAVSIFILPP-------------------------------------DYV 123 (137)
T ss_pred HHHHHHHhCCCeEEEEecHHHHHHHHHcCCCeEEEEEECC-------------------------------------CeE
Confidence 9999999999999999999999999999999999999987 999
Q ss_pred EEcCCHHHHHHHH
Q psy11425 288 IINNKFSKALLQL 300 (672)
Q Consensus 288 I~Nddle~a~~qL 300 (672)
|.|+++++++++|
T Consensus 124 ~~~~~~~~~~~~~ 136 (137)
T cd00071 124 IVNDDLEKAYEEL 136 (137)
T ss_pred EeCCCHHHHHHhh
Confidence 9999999999876
No 23
>TIGR02890 spore_yteA sporulation protein, yteA family. Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to PFAM family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. The function of proteins in this family is unknown. YteA was detected in mature spores of Bacillus subtilis by Kuwana, et al., and appears to be expressed under control of sigma-K.
Probab=99.88 E-value=1.7e-22 Score=193.27 Aligned_cols=109 Identities=30% Similarity=0.379 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------ccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11425 10 EQLAFFKFRLKKLENDLLKNIVKTTEYLRE----------TILVPDPADRATIEEENTLELRARDRERKLLIKIQQSIIN 79 (672)
Q Consensus 10 ~ql~~~r~~L~~~~~el~~~l~~~~~~~~~----------~~~~~d~~D~a~~~~~~~~~~~~~~~~~~~l~~i~~Al~r 79 (672)
+|+++||++|++++++|..++..+...+.. +..+.|.+|.++...++++.+++.++.+.+|.+|++||.|
T Consensus 1 ~ql~~~r~~L~~~r~~L~~~i~~~~~~~~~~~~~~~~~~~s~~~~d~~D~a~~~~e~~~~~~l~~~~~~~L~~Ie~AL~R 80 (159)
T TIGR02890 1 QQLAELKNMLLQEKKELEQRLKQMNKEDGIASQRESTGELSQYDNHPADLATELYEREKDIALREHEERELREIEHALQK 80 (159)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999987765431 1335899999999999999999999999999999999999
Q ss_pred cccCCCCCcCccCCcchhhhhhhCCCccchhHHhhhhhh
Q psy11425 80 IDKKEYGWCKDTGEPIGILRLLAKPMATLSLEAQQRHEL 118 (672)
Q Consensus 80 i~~gtyG~C~~Cge~Ip~~RL~a~P~a~~C~~c~~~~E~ 118 (672)
|+.|+||+|++||+|||++||+|+|||++|+.||+..|+
T Consensus 81 i~~G~YG~Ce~CGe~I~~~RL~a~P~a~~Ci~Cq~~~E~ 119 (159)
T TIGR02890 81 IENGTYGICEVCGKPIPYERLEAIPTATTCVECQNRKEV 119 (159)
T ss_pred HhCCCCCeecccCCcccHHHHhhCCCcchhHHHHHHhhh
Confidence 999999999999999999999999999999999999998
No 24
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.85 E-value=3e-20 Score=183.68 Aligned_cols=173 Identities=20% Similarity=0.342 Sum_probs=141.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC-CCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD-HKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYG 204 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~-~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YG 204 (672)
|+.+|+|+||||||||||.+.|.... +.+.+....+||+++.. +.+|++++.++|.+++..+.|.+++.++|++||
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg 77 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAG---SENHIALSEQEFFTRAGQNLFALSWHANGLYYG 77 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchh---HHhheeEcHHHHHHHHHCCchhhHHHHhCCccC
Confidence 46789999999999999999998875 46667777888876543 678999999999999999999888899999999
Q ss_pred cchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcE-EEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcCC
Q psy11425 205 TSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAI-GIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANK 283 (672)
Q Consensus 205 t~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~-vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~~~ 283 (672)
++. .+...++.|+.||+++.......+++.+..+. +||+. +|.+++.+||..|++.+.+.+..|+.++.. ...
T Consensus 78 ~~~-~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~-~s~e~l~~RL~~R~~~~~~~i~~rl~r~~~----~~~ 151 (186)
T PRK10078 78 VGI-EIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQ-VSPEILRQRLENRGRENASEINARLARAAR----YQP 151 (186)
T ss_pred CcH-HHHHHHhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEe-CCHHHHHHHHHHhCCCCHHHHHHHHHHhhh----hcc
Confidence 998 68999999999999888777777887766554 45555 569999999999988888888888865432 235
Q ss_pred CcEEEEcC--CHHHHHHHHHHHHHhc
Q psy11425 284 FDYIIINN--KFSKALLQLKAIINAN 307 (672)
Q Consensus 284 ~D~VI~Nd--dle~a~~qL~~iI~~~ 307 (672)
+|++++|+ ++++++++|..++...
T Consensus 152 ad~~vi~~~~s~ee~~~~i~~~l~~~ 177 (186)
T PRK10078 152 QDCHTLNNDGSLRQSVDTLLTLLHLS 177 (186)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhhc
Confidence 78555555 4999999999998654
No 25
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.8e-19 Score=169.12 Aligned_cols=177 Identities=23% Similarity=0.321 Sum_probs=153.9
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC---CCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhcc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD---HKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGN 201 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~---~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~ 201 (672)
+|+++|.|+||||+||.||+.++.... |.++++-.+.||+.-++ |+++.-++..+|..+..+|.|.-.|+.+|.
T Consensus 3 ~~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag---~EdH~avs~~eF~~~a~~g~FAlsWqAhGL 79 (192)
T COG3709 3 FMGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAG---GEDHDALSEAEFNTRAGQGAFALSWQAHGL 79 (192)
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCC---cccccccCHHHHHHHhhcCceeEEehhcCc
Confidence 378999999999999999999998876 46899999999887554 788899999999999999999887899999
Q ss_pred ccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhc
Q psy11425 202 FYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYA 281 (672)
Q Consensus 202 ~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~ 281 (672)
+||++. .|...++.|.+||+.++...+.+++..|+...+|.|.++ ++++.+||.+||+++.++|..|+.+......
T Consensus 80 ~Ygip~-eId~wl~~G~vvl~NgSRa~Lp~arrry~~Llvv~ita~-p~VLaqRL~~RGREs~eeI~aRL~R~a~~~~-- 155 (192)
T COG3709 80 SYGIPA-EIDLWLAAGDVVLVNGSRAVLPQARRRYPQLLVVCITAS-PEVLAQRLAERGRESREEILARLARAARYTA-- 155 (192)
T ss_pred cccCch-hHHHHHhCCCEEEEeccHhhhHHHHHhhhcceeEEEecC-HHHHHHHHHHhccCCHHHHHHHHHhhccccc--
Confidence 999987 789999999999999999999999999998888888865 9999999999999999999999988654332
Q ss_pred CCCcEEEEcCC--HHHHHHHHHHHHHhcc
Q psy11425 282 NKFDYIIINNK--FSKALLQLKAIINANR 308 (672)
Q Consensus 282 ~~~D~VI~Ndd--le~a~~qL~~iI~~~~ 308 (672)
...|.+-+||| ++.+.+++...+.+..
T Consensus 156 ~~~dv~~idNsG~l~~ag~~ll~~l~~~~ 184 (192)
T COG3709 156 GPGDVTTIDNSGELEDAGERLLALLHQDS 184 (192)
T ss_pred CCCCeEEEcCCCcHHHHHHHHHHHHHhhc
Confidence 26676655554 9999999999887543
No 26
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.83 E-value=2.2e-19 Score=175.93 Aligned_cols=172 Identities=22% Similarity=0.307 Sum_probs=143.0
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCC---CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDH---KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYG 204 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~---~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YG 204 (672)
.+|+|+|||||||||+++.|....+ .+.+..++|||+++ .+|.+|+|++.++|..+...+.|.++..+.++.||
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPAS---AGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCC---CCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 5899999999999999999988653 35677899998764 56999999999999999999999998889999999
Q ss_pred cchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcCCC
Q psy11425 205 TSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKF 284 (672)
Q Consensus 205 t~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~~~~ 284 (672)
++. .+...+.+|..||+++.......+++.+.+..+||+.+ +.+++.+|+..|++.+.+.+..++.++..... ..+
T Consensus 79 ~~~-~i~~~~~~g~~vv~~g~~~~~~~~~~~~~~~~~i~l~~-~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~~--~~~ 154 (179)
T TIGR02322 79 IPA-EIDQWLEAGDVVVVNGSRAVLPEARQRYPNLLVVNITA-SPDVLAQRLAARGRESREEIEERLARSARFAA--APA 154 (179)
T ss_pred ChH-HHHHHHhcCCEEEEECCHHHHHHHHHHCCCcEEEEEEC-CHHHHHHHHHHcCCCCHHHHHHHHHHHhhccc--ccC
Confidence 997 57777888999999999887777777677778899986 49999999999988777888888865543221 457
Q ss_pred cEE-EEcC-CHHHHHHHHHHHHHh
Q psy11425 285 DYI-IINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 285 D~V-I~Nd-dle~a~~qL~~iI~~ 306 (672)
|++ |.|+ ++++++.+|.+++.+
T Consensus 155 ~~~vi~~~~~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 155 DVTTIDNSGSLEVAGETLLRLLRK 178 (179)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcc
Confidence 887 5555 699999999998864
No 27
>PRK08356 hypothetical protein; Provisional
Probab=99.77 E-value=7.9e-18 Score=167.74 Aligned_cols=173 Identities=16% Similarity=0.196 Sum_probs=127.2
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcch
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSF 207 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~ 207 (672)
.+|+|+|||||||||+++.|.+ .++. .++++++.++..+.++.+|+|++...|..++..+.|++|+.+.++.||+..
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~--~g~~-~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~ 82 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE--KGFC-RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI 82 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH--CCCc-EEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence 5799999999999999999964 3555 688899888889999999999999999999989999999999999999874
Q ss_pred HHHHH---HHhcCCeEEEEeeHHHHHHHHH-hCCCcEEEEEeCCCHHHHHHHHHHcCCC------CHHHHHHHHHHHHH-
Q psy11425 208 FPIVR---EIKSNVDILLEIDFQGAKQIKK-KFPNAIGIFILPPSLDSLKERLYKRGQD------KYDVISRRILSANK- 276 (672)
Q Consensus 208 ~~I~~---~l~~G~~vIldi~~~g~~~l~~-~~~~~~vIfI~~ps~e~l~~RL~~Rg~~------~~e~i~~rl~~~~~- 276 (672)
.+.. .+.....+++++- ..+.+... ......+|||.+| .+++.+|+..|+.. +.+.+.++...+..
T Consensus 83 -~~~~~~~~~~~~~~ividG~-r~~~q~~~l~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~l 159 (195)
T PRK08356 83 -LIRLAVDKKRNCKNIAIDGV-RSRGEVEAIKRMGGKVIYVEAK-PEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEKL 159 (195)
T ss_pred -HHHHHHHHhccCCeEEEcCc-CCHHHHHHHHhcCCEEEEEECC-HHHHHHHHHhcCCccccccccHHHHHHHHHHHHHh
Confidence 2222 2223334555532 22222211 1123467899877 79999999999875 34444444433322
Q ss_pred --HhhhcCCCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 277 --EISYANKFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 277 --e~~~~~~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
...+...+|++|.|+ +++++..+|..++..
T Consensus 160 ~~~~~~~~~aD~vI~N~~~~e~~~~~i~~~~~~ 192 (195)
T PRK08356 160 YHTTKLKDKADFVIVNEGTLEELRKKVEEILRE 192 (195)
T ss_pred hhhhhHHHhCcEEEECCCCHHHHHHHHHHHHHH
Confidence 123346899999996 799999999999864
No 28
>PF03900 Porphobil_deamC: Porphobilinogen deaminase, C-terminal domain; InterPro: IPR022418 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. Porphobilinogen deaminase (also known as hydroxymethylbilane synthase, 2.5.1.61 from EC) functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the polymerisation of four PBG molecules into the tetrapyrrole structure, preuroporphyrinogen, with the concomitant release of four molecules of ammonia. This enzyme uses a unique dipyrro-methane cofactor made from two molecules of PBG, which is covalently attached to a cysteine side chain. The tetrapyrrole product is synthesized in an ordered, sequential fashion, by initial attachment of the first pyrrole unit (ring A) to the cofactor, followed by subsequent additions of the remaining pyrrole units (rings B, C, D) to the growing pyrrole chain []. The link between the pyrrole ring and the cofactor is broken once all the pyrroles have been added. This enzyme is folded into three distinct domains that enclose a single, large active site that makes use of an aspartic acid as its one essential catalytic residue, acting as a general acid/base during catalysis [, ]. A deficiency of hydroxymethylbilane synthase is implicated in the neuropathic disease, Acute Intermittent Porphyria (AIP) []. This entry represents the C-terminal domain of porphobilinogen deaminase, an enzyme involved in tetrapyrrole biosynthesis. The structure of this alpha/beta domain consists of alpha-beta(3)-alpha in two layers []. Porphobilinogen deaminase has a three-domain structure. Domains 1 (N-terminal) and 2 are duplications with the same structure, resembling the transferrins and periplasmic binding proteins. The dipyrromethane cofactor is covalently linked to domain 3 (C-terminal), but is bound by extensive salt-bridges and hydrogen-bonds within the cleft between domains 1 and 2, at a position corresponding to the binding sites for small-molecule ligands in the analogous proteins []. The enzyme has a single catalytic site, and the flexibility between domains is thought to aid elongation of the polypyrrole product in the active-site cleft of the enzyme.; GO: 0033014 tetrapyrrole biosynthetic process; PDB: 3EQ1_B 3ECR_A 1GTK_A 1AH5_A 2YPN_A 1PDA_A 1YPN_A.
Probab=99.71 E-value=2.2e-17 Score=139.02 Aligned_cols=72 Identities=36% Similarity=0.651 Sum_probs=64.3
Q ss_pred HHhHHHHHHHHHHhcCCCCccceeEEEEeccCCCe-EEEEEEEEcCCCcE-EEEEEEecCCCcHHHHHHHHHHHHHH
Q psy11425 585 EQTVKAERAVSRNFNGSCKISLAAFAMVNNFNESE-INLRAIITNPNGLK-IITAEVNGPIDTPETVGLYAAELLKK 659 (672)
Q Consensus 585 ~~~~~aER~~l~~l~ggC~~pig~~a~~~~~~~~~-~~l~~~~~~~dg~~-~~~~~~~~~~~~~~~lg~~~a~~l~~ 659 (672)
|+|+.+||+||+.||||||+||||||++ +++. ++|+|+|+++||++ .++.+.+++.+++.++|.++|++|++
T Consensus 1 ~~~v~aER~fl~~l~ggC~~Piga~a~~---~~~~~l~l~~~v~~~dG~~~~~~~~~~~~~~~a~~lg~~la~~l~~ 74 (74)
T PF03900_consen 1 AIEVEAERAFLKELGGGCHSPIGAYAKI---EGDERLRLRAMVGSPDGSRIIIRVEITGPIEDAEELGKKLAEELLA 74 (74)
T ss_dssp HHHHHHHHHHHHHCT--TTSSEEEEEEE---ETTE-EEEEEEEE-TTSSSEEEEEEEEE-GGGHCCHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHhCCCCCCceeeEEEE---cCCCEEEEEEEEECCCCCEEEEEEEEEcCHHHHHHHHHHHHHHHhC
Confidence 5799999999999999999999999999 6777 99999999999999 89999999999999999999999974
No 29
>TIGR00690 rpoZ DNA-directed RNA polymerase, omega subunit. The trusted cutoff excludes archaeal homologs but captures some organellar sequences.
Probab=99.66 E-value=5.8e-17 Score=129.76 Aligned_cols=59 Identities=54% Similarity=0.683 Sum_probs=55.5
Q ss_pred ccccchhhhhhhhcchhHHHHHHHHhhhhhcCCCcccccccCCCcchhhhhhhcCcCcc
Q psy11425 312 ARVTIEDGLKKINNRFKLTLCAVYRARQLLKGHTKKIIGCDNDKVTVIALREISHGKIG 370 (672)
Q Consensus 312 ~r~~~~~~~~~~~~~y~l~~~~~~~a~~~~~~~~~~~~~~~~~k~~~~a~~~~~~~~v~ 370 (672)
.||++|+++++|+|||+||++|+||||||..|+.+++..+++.||+++||+||++|+|.
T Consensus 1 a~psid~ll~~v~srY~Lv~~aakRArqL~~~~~~~~~~~~~~Kp~~iAl~EIa~gkvs 59 (59)
T TIGR00690 1 ARPTIEDAMKKIGSRYDLVLVAARRARQLQLKGTDPIVPEENDKPTVIALREIAAGLVS 59 (59)
T ss_pred CCCCHHHHHHhcCCHhHHHHHHHHHHHHHHhCCCCCccCcccCchHHHHHHHHHcCCCC
Confidence 48999999999999999999999999999988887778889999999999999999984
No 30
>PHA00080 DksA-like zinc finger domain containing protein
Probab=99.52 E-value=1.4e-14 Score=120.52 Aligned_cols=64 Identities=27% Similarity=0.237 Sum_probs=54.6
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcCccCCcchhhhhhhCCCccchhHHhhhhhh
Q psy11425 44 PDPADRATIEEENTLELRARDRERKLLIKIQQSIINIDKKEYGWCKDTGEPIGILRLLAKPMATLSLEAQQRHEL 118 (672)
Q Consensus 44 ~d~~D~a~~~~~~~~~~~~~~~~~~~l~~i~~Al~ri~~gtyG~C~~Cge~Ip~~RL~a~P~a~~C~~c~~~~E~ 118 (672)
.|..|.|++..++.++.++. +++.++..++||+|++||++||++||+|+|++++|++||+..|.
T Consensus 1 ~D~~D~A~~~~e~~~~~al~-----------~~~~~~~~~~~~~C~~Cg~~Ip~~Rl~a~P~~~~Cv~Cq~~~E~ 64 (72)
T PHA00080 1 ADIIDRAAEIEELQRERALA-----------NRRNKYQAPSATHCEECGDPIPEARREAVPGCRTCVSCQEILEL 64 (72)
T ss_pred CcHHHHHHHHHHHHHHHHHH-----------HHHhcccCCCCCEecCCCCcCcHHHHHhCCCccCcHHHHHHHHH
Confidence 36778888777777666553 45567888999999999999999999999999999999999888
No 31
>PRK00392 rpoZ DNA-directed RNA polymerase subunit omega; Reviewed
Probab=99.45 E-value=5.6e-14 Score=116.65 Aligned_cols=59 Identities=53% Similarity=0.697 Sum_probs=56.5
Q ss_pred cccccchhhhhhhhcchhHHHHHHHHhhhhhcCCCcccccccCCCcchhhhhhhcCcCcc
Q psy11425 311 MARVTIEDGLKKINNRFKLTLCAVYRARQLLKGHTKKIIGCDNDKVTVIALREISHGKIG 370 (672)
Q Consensus 311 m~r~~~~~~~~~~~~~y~l~~~~~~~a~~~~~~~~~~~~~~~~~k~~~~a~~~~~~~~v~ 370 (672)
|.+|++|+++++++|||.||++|+||||||..|+.++ .+..+.||+++|++||++|+|.
T Consensus 1 m~~~~i~~ll~~v~~ry~Lv~~aakRArql~~~~~~~-~~~~~~K~~~~Al~EI~~gki~ 59 (69)
T PRK00392 1 MARPTIEDLLEKVDNRYELVLLAAKRARQLRAGAKPP-VDKSSDKPVVIALREIAEGKVT 59 (69)
T ss_pred CCcccHHHHHHHcCCHHHHHHHHHHHHHHHHcCCCCC-CCCcCCChHHHHHHHHHcCCCc
Confidence 7899999999999999999999999999999999988 7778899999999999999997
No 32
>TIGR02419 C4_traR_proteo phage/conjugal plasmid C-4 type zinc finger protein, TraR family. Members of this family are putative C4-type zinc finger proteins found almost exclusively in prophage regions, actual phage, or conjugal transfer regions of the Proteobactia. This small protein (about 70 amino acids) appears homologous to but is smaller than DksA (DnaK suppressor protein), found to be critical for regulating transcription of ribosomal RNA.
Probab=99.45 E-value=9.1e-14 Score=112.79 Aligned_cols=63 Identities=33% Similarity=0.290 Sum_probs=51.2
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcCccCCcchhhhhhhCCCccchhHHhhhhh
Q psy11425 45 DPADRATIEEENTLELRARDRERKLLIKIQQSIINIDKKEYGWCKDTGEPIGILRLLAKPMATLSLEAQQRHE 117 (672)
Q Consensus 45 d~~D~a~~~~~~~~~~~~~~~~~~~l~~i~~Al~ri~~gtyG~C~~Cge~Ip~~RL~a~P~a~~C~~c~~~~E 117 (672)
|..|.|++..++..+.++..+.... ....+||+|++||+|||++||+|+|++++|++||+..|
T Consensus 1 D~~D~A~e~~e~~~~~ala~~~~~~----------~~~~s~g~C~~Cg~~Ip~~Rl~a~p~~~~Cv~Cq~~~E 63 (63)
T TIGR02419 1 DEFDRAQELEEELLERALAAARAKK----------VIGPSLRECEDCGEPIPEARREALPGVTRCVSCQEILE 63 (63)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHhcc----------ccCCCCCeeccCCCcChHHHHhhcCCcCCcHHHHhhcC
Confidence 5678899888888887775322111 35567999999999999999999999999999998765
No 33
>KOG0708|consensus
Probab=99.43 E-value=1.1e-12 Score=138.51 Aligned_cols=181 Identities=20% Similarity=0.246 Sum_probs=158.4
Q ss_pred hhhhhhccccccceEEEEeCCCCCChHHHHHHHHhcCC-CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCch
Q psy11425 115 RHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFL 193 (672)
Q Consensus 115 ~~E~~~r~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fl 193 (672)
.|+.+.++.....++|+|.||. |.-|...|...+| .|..+++||+|+. +++|++.++.+.|+
T Consensus 175 sY~~V~~~~~~~~RPVlilg~~---~d~l~~~Lv~e~~~kF~~C~~~t~~~~--------------~~eme~~~k~~~fI 237 (359)
T KOG0708|consen 175 SYELVERLDSNYLRPVLILGPL---LDRLLDNLVNEFPDKFKSCLPETLRPS--------------REEMERDSKEETFI 237 (359)
T ss_pred cchhhhhhhccccCceEeccch---HHHHHHHHHHhhhccccccchhhhccc--------------HHHhhhhcccCcee
Confidence 3888888888889999999997 7779999998876 7999999999875 67899999999999
Q ss_pred hHHhHhccccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy11425 194 EWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILS 273 (672)
Q Consensus 194 e~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~ 273 (672)
+++++++++|||+..+|..+.++|++||+|+...++..++....+|++|||.+.|.+.++.+= ...+.+..++.+++
T Consensus 238 ~~~q~~~~~~~tsv~si~~va~k~~HCiLdv~~~ai~rLq~~~IyPIvIfIr~ks~~~i~e~~---~~~t~~~ake~~e~ 314 (359)
T KOG0708|consen 238 DAGQRSNGLYGTSVASIREVAEKGKHCLLDVGGDAIRRLQRNQIYPIVIFIRVKSKKQIKERN---LKITGEQAKELLER 314 (359)
T ss_pred eecccCCCcceehHHHHHHHhcCCCceEEecCcchHHHHHhcceeceEEEEEechHHHHHHHh---cccchHHHHHHHHH
Confidence 999999999999999999999999999999999999999998899999999999887776653 33456667777777
Q ss_pred H-HHHhhhcCCCcEEEEcCCHHHHHHHHHHHHHhccccccccc
Q psy11425 274 A-NKEISYANKFDYIIINNKFSKALLQLKAIINANRCFMARVT 315 (672)
Q Consensus 274 ~-~~e~~~~~~~D~VI~Nddle~a~~qL~~iI~~~~~~m~r~~ 315 (672)
+ ..|..+..+|..+|...++++.+.+|+.+|.++.-...|++
T Consensus 315 a~klEqe~~~~~t~vv~~~s~e~i~~qvk~~I~~Eq~k~iWVp 357 (359)
T KOG0708|consen 315 ARKLEQELDRYFTLVVQGGSLEELLSQVKDIIEDEQKKVIWVP 357 (359)
T ss_pred HHHhHhhhhhceEEEEecccHHHHHHHHHHHHHHhhCCeEeee
Confidence 6 45778999999999988999999999999998876666654
No 34
>PRK13715 conjugal transfer protein TraR; Provisional
Probab=99.43 E-value=1.3e-13 Score=115.02 Aligned_cols=69 Identities=26% Similarity=0.260 Sum_probs=54.4
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--CCCCCcCccCCcchhhhhhhCCCccchhHHhhhhhhhhc
Q psy11425 44 PDPADRATIEEENTLELRARDRERKLLIKIQQSIINIDK--KEYGWCKDTGEPIGILRLLAKPMATLSLEAQQRHELKKK 121 (672)
Q Consensus 44 ~d~~D~a~~~~~~~~~~~~~~~~~~~l~~i~~Al~ri~~--gtyG~C~~Cge~Ip~~RL~a~P~a~~C~~c~~~~E~~~r 121 (672)
.|..|+|++..++..+.++. +++.++.. -+|++|++||+|||.+||+|+|++++|++||+..|...+
T Consensus 2 ~D~~D~Aqe~~e~~~~~ai~-----------~~~~~~~~~~~~~~~C~~Cg~~Ip~~Rl~a~p~~~~Cv~Cq~~~E~~~~ 70 (73)
T PRK13715 2 SDEADEAYSVTEQLTMTGIN-----------RIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRK 70 (73)
T ss_pred CcHHHHHHHHHHHHHHHHHH-----------HHHhhhcccCCCcccHhhcCCcCCHHHHhcCCCcCCCHHHHHHHHHHhc
Confidence 47788888777666665443 33444432 257899999999999999999999999999999999887
Q ss_pred cc
Q psy11425 122 SF 123 (672)
Q Consensus 122 ~~ 123 (672)
++
T Consensus 71 ~~ 72 (73)
T PRK13715 71 HY 72 (73)
T ss_pred cc
Confidence 65
No 35
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.43 E-value=1.1e-12 Score=130.84 Aligned_cols=176 Identities=16% Similarity=0.101 Sum_probs=108.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCC--------CCCcccc----cCCHHHHHHHHHcCCchh
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGE--------KNGREYY----FTNIDNFKKLQKSGKFLE 194 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E--------~~G~dY~----fvs~~~F~~~i~~g~fle 194 (672)
+.+|+|||++||||||+++.|.+.+..+..+.....+...++. ..|.++. .+++..+...+.++...-
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 81 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAELGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR 81 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence 4689999999999999999998854222212111111111111 1232222 357777776665443211
Q ss_pred HHhHhccccCcchHHHHHHHhcC---CeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHH
Q psy11425 195 WAEVHGNFYGTSFFPIVREIKSN---VDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRI 271 (672)
Q Consensus 195 ~~~~~g~~YGt~~~~I~~~l~~G---~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl 271 (672)
. ..+.-.+......+...++.. +.+++++.. +.+.........+|+|.+| ++++.+|+..|+..+.+.+..|+
T Consensus 82 ~-~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~pl--l~e~~~~~~~D~vi~V~a~-~e~~~~Rl~~R~~~s~e~~~~ri 157 (194)
T PRK00081 82 K-KLEAILHPLIREEILEQLQEAESSPYVVLDIPL--LFENGLEKLVDRVLVVDAP-PETQLERLMARDGLSEEEAEAII 157 (194)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHcccCCEEEEEehH--hhcCCchhhCCeEEEEECC-HHHHHHHHHHcCCCCHHHHHHHH
Confidence 1 112211111223444444432 566666532 2221111123466888876 99999999999888889999999
Q ss_pred HHHHHHhhhcCCCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 272 LSANKEISYANKFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 272 ~~~~~e~~~~~~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
.+|.....+...+|+||.|+ +++++..++..+++.
T Consensus 158 ~~Q~~~~~~~~~ad~vI~N~g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 158 ASQMPREEKLARADDVIDNNGDLEELRKQVERLLQE 193 (194)
T ss_pred HHhCCHHHHHHhCCEEEECCCCHHHHHHHHHHHHHh
Confidence 98876666777899999999 799999999998854
No 36
>PRK11019 hypothetical protein; Provisional
Probab=99.42 E-value=1.7e-13 Score=117.59 Aligned_cols=54 Identities=26% Similarity=0.394 Sum_probs=49.4
Q ss_pred HHHHHHhhccccC-CCCCcCccCCcchhhhhhhCCCccchhHHhhhhhhhhcccc
Q psy11425 71 IKIQQSIINIDKK-EYGWCKDTGEPIGILRLLAKPMATLSLEAQQRHELKKKSFK 124 (672)
Q Consensus 71 ~~i~~Al~ri~~g-tyG~C~~Cge~Ip~~RL~a~P~a~~C~~c~~~~E~~~r~~~ 124 (672)
..|++++.++..| +||+|++||+|||++||+|+|++++|++||+..|...+++.
T Consensus 21 ~aI~~a~~r~~~g~syg~C~~CG~~Ip~~Rl~A~P~a~~Cv~Cq~~~E~~~k~~~ 75 (88)
T PRK11019 21 DAIARARSELPRGESLTECEECGEPIPEARRKAIPGVRLCVACQQEKDLQQAAFS 75 (88)
T ss_pred HHHHHHHhhcccCCcCCeeCcCCCcCcHHHHhhcCCccccHHHHHHHHHHHhHhc
Confidence 4678899999989 79999999999999999999999999999999998877654
No 37
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.35 E-value=3.7e-12 Score=128.38 Aligned_cols=67 Identities=21% Similarity=0.282 Sum_probs=57.7
Q ss_pred cEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcCCCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 239 AIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 239 ~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~~~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
..+|+|.+| ++++.+|+..|+..+.+.+.+|+..|..+..+...+|++|.|+ +++++..++..+++.
T Consensus 135 d~ii~V~a~-~e~~~~Rl~~R~~~s~e~~~~Ri~~q~~~~~~~~~ad~vI~N~g~~e~l~~~i~~~~~~ 202 (208)
T PRK14731 135 DFIVVVAAD-TELRLERAVQRGMGSREEIRRRIAAQWPQEKLIERADYVIYNNGTLDELKAQTEQLYQV 202 (208)
T ss_pred CeEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHHcCChHHHHHhCCEEEECCCCHHHHHHHHHHHHHH
Confidence 455777765 9999999999998899999999998876666667899999998 699999999998865
No 38
>COG1758 RpoZ DNA-directed RNA polymerase, subunit K/omega [Transcription]
Probab=99.33 E-value=8e-13 Score=111.02 Aligned_cols=60 Identities=53% Similarity=0.673 Sum_probs=56.6
Q ss_pred cccccchhhhhhhhcchhHHHHHHHHhhhhhcCCCcccccccC-CCcchhhhhhhcCcCcc
Q psy11425 311 MARVTIEDGLKKINNRFKLTLCAVYRARQLLKGHTKKIIGCDN-DKVTVIALREISHGKIG 370 (672)
Q Consensus 311 m~r~~~~~~~~~~~~~y~l~~~~~~~a~~~~~~~~~~~~~~~~-~k~~~~a~~~~~~~~v~ 370 (672)
|.+|++++++++++|||.|++++++||+||..|+++++....+ +|||++|++||++|++.
T Consensus 1 m~~~~~~~l~~~~~~ryelv~~aa~RA~Ql~~ga~~~~~~~~~~~kpv~iAl~Ei~~g~i~ 61 (74)
T COG1758 1 MARPTIEDLLDKVGNRYELVVVAAKRARQLAAGAPPLVDDEENKDKPVVIALREIAEGKIP 61 (74)
T ss_pred CCccCHHHHHhhccCHHHHHHHHHHHHHHHHcCCCCccccccccCChHHHHHHHHHcCCCC
Confidence 6789999999999999999999999999999999998776665 99999999999999987
No 39
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.32 E-value=6.8e-12 Score=122.82 Aligned_cols=160 Identities=13% Similarity=0.103 Sum_probs=97.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcc-cccCCHHHHHH---HH-HcCCchhHH-hHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGRE-YYFTNIDNFKK---LQ-KSGKFLEWA-EVHG 200 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~d-Y~fvs~~~F~~---~i-~~g~fle~~-~~~g 200 (672)
+++|+|+|+|||||||+++.|.+..+...+.+ |.| |++..+..+.. .+ ..+.+.++. ...+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~-------------~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHF-------------GVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFR 68 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCcccc-------------CccHHHHhcChhhcccccccccCccCCcccchHHH
Confidence 57999999999999999999988754211111 222 22222221111 00 011112221 2345
Q ss_pred cccCcchHHHHHHHhcCCeEEEEeeHHHHHHH----HHhCC-CcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy11425 201 NFYGTSFFPIVREIKSNVDILLEIDFQGAKQI----KKKFP-NAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSAN 275 (672)
Q Consensus 201 ~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l----~~~~~-~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~ 275 (672)
+.|++....+...++.|.+||+|........+ +.... ....||+.+| .+++.+|+..|++... .....+.
T Consensus 69 ~~y~~~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~-~~~l~~R~~~R~~~~~----~~~~~~~ 143 (175)
T cd00227 69 LLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCP-GEVAEGRETARGDRVP----GQARKQA 143 (175)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECC-HHHHHHHHHhcCCccc----hHHHHHH
Confidence 67888888888899999999999765422222 22222 4567888876 7999999999985422 1222222
Q ss_pred HHhhhcCCCcEEEEcC--CHHHHHHHHHHHH
Q psy11425 276 KEISYANKFDYIIINN--KFSKALLQLKAII 304 (672)
Q Consensus 276 ~e~~~~~~~D~VI~Nd--dle~a~~qL~~iI 304 (672)
........+|++|.++ +++++..+|.+.|
T Consensus 144 ~~~~~~~~~dl~iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 144 RVVHAGVEYDLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred HHhcCCCcceEEEECCCCCHHHHHHHHHHhc
Confidence 2222235689999887 4888888887654
No 40
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.31 E-value=1.2e-11 Score=123.50 Aligned_cols=174 Identities=16% Similarity=0.037 Sum_probs=99.5
Q ss_pred eEEEEeCCCCCChHHHHHHHHhc-CCCceeecccccccCCCCC--------CCCcccc-----cCCHHHHHHHHHcCCch
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKK-DHKIKLSISTTTRPMRPGE--------KNGREYY-----FTNIDNFKKLQKSGKFL 193 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~-~~~~~~~v~~TTR~~r~~E--------~~G~dY~-----fvs~~~F~~~i~~g~fl 193 (672)
++|+|||++||||||+++.|.+. +..+..+.......-+++. ..|.++. .+++......+..+.-
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~- 80 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPE- 80 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHH-
Confidence 47999999999999999999987 3222111111000000110 0111110 1233333333211110
Q ss_pred hHHhHhccccCcchHHHHHHHhc---CCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHH
Q psy11425 194 EWAEVHGNFYGTSFFPIVREIKS---NVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRR 270 (672)
Q Consensus 194 e~~~~~g~~YGt~~~~I~~~l~~---G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~r 270 (672)
....++...+......+...+.. .+.+++++ ..+.+.........+|||.+| .+++.+|+..|+..+.+.+..|
T Consensus 81 ~~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~--pll~E~~~~~~~D~ii~V~a~-~e~r~~Rl~~R~g~s~e~~~~r 157 (195)
T PRK14730 81 ERRWLENLIHPYVRERFEEELAQLKSNPIVVLVI--PLLFEAKLTDLCSEIWVVDCS-PEQQLQRLIKRDGLTEEEAEAR 157 (195)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe--HHhcCcchHhCCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHH
Confidence 01112222222222233333332 34555554 233222222233456999987 9999999999988888999999
Q ss_pred HHHHHHHhhhcCCCcEEEEcC-CHHHHHHHHHHHHH
Q psy11425 271 ILSANKEISYANKFDYIIINN-KFSKALLQLKAIIN 305 (672)
Q Consensus 271 l~~~~~e~~~~~~~D~VI~Nd-dle~a~~qL~~iI~ 305 (672)
+.++.........+|+||.|+ +++++..++..++.
T Consensus 158 i~~Q~~~~~k~~~aD~vI~N~g~~e~l~~qv~~~l~ 193 (195)
T PRK14730 158 INAQWPLEEKVKLADVVLDNSGDLEKLYQQVDQLLK 193 (195)
T ss_pred HHhCCCHHHHHhhCCEEEECCCCHHHHHHHHHHHHh
Confidence 988776556677899999999 69999999998763
No 41
>PF01192 RNA_pol_Rpb6: RNA polymerase Rpb6 ; InterPro: IPR006110 In eukaryotes, there are three different forms of DNA-dependent RNA polymerases (2.7.7.6 from EC) transcribing different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. In archaebacteria, there is generally a single form of RNA polymerase which also consists of an oligomeric assemblage of 10 to 13 polypeptides. A component of 14 to 18 kDa shared by all three forms of eukaryotic RNA polymerases and which has been sequenced in budding yeast (gene RPB6 or RPO26), in Schizosaccharomyces pombe (Fission yeast) (gene rpb6 or rpo15), in human and in African swine fever virus (ASFV) is evolutionary related to the archaebacterial subunit K (gene rpoK). The archaebacterial protein is colinear with the C-terminal part of the eukaryotic subunit. The structures of the omega subunit and RBP6, and the structures of the omega/beta' and RPB6/RPB1 interfaces, suggest a molecular mechanism for the function of omega and RPB6 in promoting RNAP assembly and/or stability. The conserved regions of omega and RPB6 form a compact structural domain that interacts simultaneously with conserved regions of the largest RNAP subunit and with the C-terminal tail following a conserved region of the largest RNAP subunit. The second half of the conserved region of omega and RPB6 forms an arc that projects away from the remainder of the structural domain and wraps over and around the C-terminal tail of the largest RNAP subunit, clamping it in a crevice, and threading the C-terminal tail of the largest RNAP subunit through the narrow gap between omega and RPB6 [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_R 2Y0S_I 3HKZ_U 2PMZ_K 3M3Y_F 3HOX_F 3GTJ_F 4A3K_F 2VUM_F 3S14_F ....
Probab=99.30 E-value=1.7e-12 Score=103.58 Aligned_cols=54 Identities=43% Similarity=0.546 Sum_probs=50.7
Q ss_pred hhhhhhhhcchhHHHHHHHHhhhhhcCCCcccccccCCCcchhhhhhhcCcCcc
Q psy11425 317 EDGLKKINNRFKLTLCAVYRARQLLKGHTKKIIGCDNDKVTVIALREISHGKIG 370 (672)
Q Consensus 317 ~~~~~~~~~~y~l~~~~~~~a~~~~~~~~~~~~~~~~~k~~~~a~~~~~~~~v~ 370 (672)
|+|+++++|||.|+++++||||||..|+.|++....+.||+++|++||++|++.
T Consensus 1 e~l~~~~~~rY~Lv~~~akRArql~~g~~~~~~~~~~~k~v~iAl~EI~~gki~ 54 (57)
T PF01192_consen 1 EDLLEKVDNRYELVILAAKRARQLSEGAPPLVEEDNEMKPVSIALEEIAEGKIK 54 (57)
T ss_dssp SHHHHSSSSHHHHHHHHHHHHHHHHTTSTTSSSSSSSSSSSHHHHHHHHTTSSC
T ss_pred ChhhhccCCHhHHHHHHHHHHHHHHcCcccccccccCCCcHHHHHHHHHcCCCC
Confidence 589999999999999999999999999999987777779999999999999985
No 42
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.30 E-value=2e-11 Score=122.45 Aligned_cols=177 Identities=17% Similarity=0.062 Sum_probs=104.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc-CCCceeecccccccCCCC-------CCCCcccc---cCCHHHHHHHHHcCCchhH
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK-DHKIKLSISTTTRPMRPG-------EKNGREYY---FTNIDNFKKLQKSGKFLEW 195 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~-~~~~~~~v~~TTR~~r~~-------E~~G~dY~---fvs~~~F~~~i~~g~fle~ 195 (672)
+.+|+|||++||||||+++.|.+. +..+..+.........++ +..|.++. -+++..+.+.+.++.- ..
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~-~~ 84 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKE-AK 84 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHH-HH
Confidence 468999999999999999999875 322222111100000000 11122211 1344444443322110 01
Q ss_pred HhHhccccCcchHHHHHHHhc--CCeEEEEeeHHHHHHHH--HhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHH
Q psy11425 196 AEVHGNFYGTSFFPIVREIKS--NVDILLEIDFQGAKQIK--KKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRI 271 (672)
Q Consensus 196 ~~~~g~~YGt~~~~I~~~l~~--G~~vIldi~~~g~~~l~--~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl 271 (672)
...+.-.+......+...+.. ...+++++ ..+.+.. .......+|+|.+| .+++.+|++.|+..+.+.+..|+
T Consensus 85 ~~Le~i~HP~V~~~~~~~~~~~~~~~vv~ei--pLL~E~~~~~~~~~D~vi~V~a~-~e~ri~Rl~~Rd~~s~~~a~~ri 161 (204)
T PRK14733 85 KWLEDYLHPVINKEIKKQVKESDTVMTIVDI--PLLGPYNFRHYDYLKKVIVIKAD-LETRIRRLMERDGKNRQQAVAFI 161 (204)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCCeEEEEe--chhhhccCchhhhCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHH
Confidence 112222222222233333333 23455554 3332221 11123456888876 99999999999888999999999
Q ss_pred HHHHHHhhhcCCCcEEEEcCC--HHHHHHHHHHHHHhc
Q psy11425 272 LSANKEISYANKFDYIIINNK--FSKALLQLKAIINAN 307 (672)
Q Consensus 272 ~~~~~e~~~~~~~D~VI~Ndd--le~a~~qL~~iI~~~ 307 (672)
.+|.........+|+||.|+. ++++..++..+++..
T Consensus 162 ~~Q~~~eek~~~aD~VI~N~g~~~~~l~~~~~~~~~~~ 199 (204)
T PRK14733 162 NLQISDKEREKIADFVIDNTELTDQELESKLITTINEI 199 (204)
T ss_pred HhCCCHHHHHHhCCEEEECcCCCHHHHHHHHHHHHHHH
Confidence 999888888899999999984 799999999988764
No 43
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.30 E-value=4.7e-12 Score=126.47 Aligned_cols=172 Identities=14% Similarity=0.048 Sum_probs=101.2
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCC-----------Ccccc----cCCHHHHHHHHHcCCch
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKN-----------GREYY----FTNIDNFKKLQKSGKFL 193 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~-----------G~dY~----fvs~~~F~~~i~~g~fl 193 (672)
+|+|||++||||||+++.|.+.+.. .+......+ ...+.+ |.++. -+++..+...+.++.-.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~g~~-~i~~D~i~~--~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~ 77 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEELGAF-GISADRLAK--RYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEK 77 (196)
T ss_pred CEEEECCCCccHHHHHHHHHHCCCE-EEecchHHH--HHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHH
Confidence 4899999999999999999876421 111111111 111111 11111 13444444333221110
Q ss_pred hHHhHhccccCcchHHHHHHHh---cCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHH
Q psy11425 194 EWAEVHGNFYGTSFFPIVREIK---SNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRR 270 (672)
Q Consensus 194 e~~~~~g~~YGt~~~~I~~~l~---~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~r 270 (672)
....+.-.+......+...+. +++.+++++ ..+.+.........+|||.+| ++++.+|+..|+..+.+.+..|
T Consensus 78 -~~~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~--pLL~E~~~~~~~D~vi~V~a~-~e~r~~RL~~R~g~s~e~a~~r 153 (196)
T PRK14732 78 -LKALNELIHPLVRKDFQKILQTTAEGKLVIWEV--PLLFETDAYTLCDATVTVDSD-PEESILRTISRDGMKKEDVLAR 153 (196)
T ss_pred -HHHHHHHhhHHHHHHHHHHHHHHhcCCcEEEEe--eeeeEcCchhhCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHH
Confidence 011111111111222222222 345666654 222222111223567999987 9999999999988889999999
Q ss_pred HHHHHHHhhhcCCCcEEEEcC-CHHHHHHHHHHHHHhc
Q psy11425 271 ILSANKEISYANKFDYIIINN-KFSKALLQLKAIINAN 307 (672)
Q Consensus 271 l~~~~~e~~~~~~~D~VI~Nd-dle~a~~qL~~iI~~~ 307 (672)
+.+|.....+...+|+||.|+ +++++..++..+++..
T Consensus 154 i~~Q~~~~~k~~~aD~vI~N~~~~~~l~~~v~~l~~~~ 191 (196)
T PRK14732 154 IASQLPITEKLKRADYIVRNDGNREGLKEECKILYSTL 191 (196)
T ss_pred HHHcCCHHHHHHhCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 999877777788999999999 6999999999988654
No 44
>PRK04040 adenylate kinase; Provisional
Probab=99.25 E-value=1.5e-10 Score=114.97 Aligned_cols=164 Identities=16% Similarity=0.243 Sum_probs=94.8
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCC-Cceeeccccc-ccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhcccc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTT-RPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFY 203 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TT-R~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~Y 203 (672)
++++|+|+|+|||||||+++.|.+..+ .+.+...... +.. . ...| ...++++|..+-. ..-.++..
T Consensus 1 ~~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~-a-~~~g---~~~~~d~~r~l~~-~~~~~~~~------ 68 (188)
T PRK04040 1 MMKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEV-A-KEEG---LVEHRDEMRKLPP-EEQKELQR------ 68 (188)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHH-H-HHcC---CCCCHHHHhhCCh-hhhHHHHH------
Confidence 367999999999999999999988864 3322211000 000 0 0001 1224444443211 00011110
Q ss_pred CcchHHHHHHHhcCCeEEEEeeH-----HH------HHHHHHhCCCcEEEEEeCCCHHHHHHHHHH----cCCCCHHHHH
Q psy11425 204 GTSFFPIVREIKSNVDILLEIDF-----QG------AKQIKKKFPNAIGIFILPPSLDSLKERLYK----RGQDKYDVIS 268 (672)
Q Consensus 204 Gt~~~~I~~~l~~G~~vIldi~~-----~g------~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~----Rg~~~~e~i~ 268 (672)
...+.+.+ ...+..+|+|..+ .+ ...++...++.+ |++.+|+.+++.+|+.. |+.++.+.++
T Consensus 69 -~a~~~i~~-~~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~i-i~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~ 145 (188)
T PRK04040 69 -EAAERIAE-MAGEGPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVI-VLIEADPDEILMRRLRDETRRRDVETEEDIE 145 (188)
T ss_pred -HHHHHHHH-hhcCCCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEE-EEEeCCHHHHHHHHhcccccCCCCCCHHHHH
Confidence 00111111 2335568888733 12 133444445555 66666656777777753 6778889999
Q ss_pred HHHHHHHHHhh-h---cCCCcEEEEcCC--HHHHHHHHHHHH
Q psy11425 269 RRILSANKEIS-Y---ANKFDYIIINNK--FSKALLQLKAII 304 (672)
Q Consensus 269 ~rl~~~~~e~~-~---~~~~D~VI~Ndd--le~a~~qL~~iI 304 (672)
.++..+..+.. | ...++++|+|++ +++++.+|.++|
T Consensus 146 ~~~~~a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 146 EHQEMNRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 99888766532 3 356999999999 999999999887
No 45
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.25 E-value=7e-11 Score=121.63 Aligned_cols=85 Identities=18% Similarity=0.076 Sum_probs=66.5
Q ss_pred eEEEEeeHHHHHHHH-HhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcCCCcEEEEcC---CHH
Q psy11425 219 DILLEIDFQGAKQIK-KKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINN---KFS 294 (672)
Q Consensus 219 ~vIldi~~~g~~~l~-~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~~~~D~VI~Nd---dle 294 (672)
.|++|+ ..+.+.. .......+|+|.+| .+++.+||..|+..+.+++.+|+.+|.....+...+|+||.|+ |++
T Consensus 119 ~vv~ev--PLL~E~~~~~~~~D~iv~V~a~-~e~ri~RL~~R~g~s~eea~~Ri~~Q~~~~ek~~~aD~VI~N~~~g~~~ 195 (244)
T PTZ00451 119 IVVLDA--PTLFETKTFTYFVSASVVVSCS-EERQIERLRKRNGFSKEEALQRIGSQMPLEEKRRLADYIIENDSADDLD 195 (244)
T ss_pred EEEEEe--chhhccCchhhcCCeEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhCCCHHHHHHhCCEEEECCCCCCHH
Confidence 566654 3333322 12233556888876 9999999999988899999999999887777888999999999 699
Q ss_pred HHHHHHHHHHHh
Q psy11425 295 KALLQLKAIINA 306 (672)
Q Consensus 295 ~a~~qL~~iI~~ 306 (672)
++..++..++..
T Consensus 196 ~L~~~v~~~~~~ 207 (244)
T PTZ00451 196 ELRGSVCDCVAW 207 (244)
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
No 46
>PLN02422 dephospho-CoA kinase
Probab=99.23 E-value=7.8e-11 Score=120.26 Aligned_cols=87 Identities=17% Similarity=0.060 Sum_probs=67.6
Q ss_pred CeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcCCCcEEEEcC-CHHHH
Q psy11425 218 VDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINN-KFSKA 296 (672)
Q Consensus 218 ~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~~~~D~VI~Nd-dle~a 296 (672)
+.+++++ ..+.+.........+|||.+| ++++.+|+..|+..+.+.+.+|+++|.........+|+||.|+ +++++
T Consensus 108 ~~vv~ei--pLL~E~~~~~~~D~vI~V~a~-~e~ri~RL~~R~g~s~eea~~Ri~~Q~~~eek~~~AD~VI~N~gs~e~L 184 (232)
T PLN02422 108 KVIVLDI--PLLFETKMDKWTKPVVVVWVD-PETQLERLMARDGLSEEQARNRINAQMPLDWKRSKADIVIDNSGSLEDL 184 (232)
T ss_pred CEEEEEe--hhhhhcchhhhCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHHcCChhHHHhhCCEEEECCCCHHHH
Confidence 3455443 344333323334567999986 9999999999988889999999988876666678899999999 69999
Q ss_pred HHHHHHHHHhc
Q psy11425 297 LLQLKAIINAN 307 (672)
Q Consensus 297 ~~qL~~iI~~~ 307 (672)
..++..+++..
T Consensus 185 ~~qv~~ll~~l 195 (232)
T PLN02422 185 KQQFQKVLEKI 195 (232)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 47
>KOG3220|consensus
Probab=99.20 E-value=7.7e-11 Score=115.16 Aligned_cols=171 Identities=17% Similarity=0.084 Sum_probs=106.2
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCC--------CCCCcccc----cCCHHHHHHHHHcCCchhH
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPG--------EKNGREYY----FTNIDNFKKLQKSGKFLEW 195 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~--------E~~G~dY~----fvs~~~F~~~i~~g~fle~ 195 (672)
.+|+|||++||||||+++.|...+..+..+..-..+.-.|| |..|.++. -++++...+++.++
T Consensus 2 ~iVGLTGgiatGKStVs~~f~~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~----- 76 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFKALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSD----- 76 (225)
T ss_pred eEEEeecccccChHHHHHHHHHcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCC-----
Confidence 58999999999999999999977633322221111111111 12222211 12444444443221
Q ss_pred HhHhccccCcchHHH--------HHHHhcCCe-EEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHH
Q psy11425 196 AEVHGNFYGTSFFPI--------VREIKSNVD-ILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDV 266 (672)
Q Consensus 196 ~~~~g~~YGt~~~~I--------~~~l~~G~~-vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~ 266 (672)
.+....+.++.+..| ...+-.|.. |++|+ ..+.+.+.......+|.+.++ .+...+|+..|+..+++.
T Consensus 77 ~~~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDi--PLLFE~~~~~~~~~tvvV~cd-~~~Ql~Rl~~Rd~lse~d 153 (225)
T KOG3220|consen 77 PKKRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDI--PLLFEAKLLKICHKTVVVTCD-EELQLERLVERDELSEED 153 (225)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEec--hHHHHHhHHhheeeEEEEEEC-cHHHHHHHHHhccccHHH
Confidence 111111222222222 233345654 55544 445454444444556777765 899999999999889999
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 267 ISRRILSANKEISYANKFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 267 i~~rl~~~~~e~~~~~~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
.+.|+.+|+.-.+..+.+|+||.|| +++++++++..++..
T Consensus 154 Ae~Rl~sQmp~~~k~~~a~~Vi~Nng~~~~l~~qv~~v~~~ 194 (225)
T KOG3220|consen 154 AENRLQSQMPLEKKCELADVVIDNNGSLEDLYEQVEKVLAL 194 (225)
T ss_pred HHHHHHhcCCHHHHHHhhheeecCCCChHHHHHHHHHHHHH
Confidence 9999999988778888999999999 699999999988754
No 48
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.18 E-value=1.2e-10 Score=116.61 Aligned_cols=175 Identities=18% Similarity=0.105 Sum_probs=101.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccC-CCC--------CCCCcccc----cCCHHHHHHHHHcCC-
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPM-RPG--------EKNGREYY----FTNIDNFKKLQKSGK- 191 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~-r~~--------E~~G~dY~----fvs~~~F~~~i~~g~- 191 (672)
|..+|+|||++||||||+++.|.+.+..+..+. ...|.- .++ +..|.+.. -.++..+...+-++.
T Consensus 1 ~~~iIglTG~igsGKStva~~~~~~G~~vidaD-~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~ 79 (201)
T COG0237 1 MMLIIGLTGGIGSGKSTVAKILAELGFPVIDAD-DVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPE 79 (201)
T ss_pred CceEEEEecCCCCCHHHHHHHHHHcCCeEEEcc-HHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHH
Confidence 457999999999999999999999643222211 111100 000 11122111 022333332221111
Q ss_pred chhHHhHhccccCcchHHH---HHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHH
Q psy11425 192 FLEWAEVHGNFYGTSFFPI---VREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVIS 268 (672)
Q Consensus 192 fle~~~~~g~~YGt~~~~I---~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~ 268 (672)
-..| ...-.+......+ ..... ...+++++ +.+.+........++|.|.+| ++++.+|+++|+..+.+.+.
T Consensus 80 ~~~~--Le~i~hPli~~~~~~~~~~~~-~~~~~~ei--plL~e~~~~~~~d~Vi~V~a~-~e~r~eRl~~R~~~~~e~~~ 153 (201)
T COG0237 80 ARLK--LEKILHPLIRAEIKVVIDGAR-SPYVVLEI--PLLFEAGGEKYFDKVIVVYAP-PEIRLERLMKRDGLDEEDAE 153 (201)
T ss_pred HHHH--HHHhhhHHHHHHHHHHHHHhh-CCceEEEc--hHHHhccccccCCEEEEEECC-HHHHHHHHHhcCCCCHHHHH
Confidence 0111 1111111112221 11122 23444444 343333222223467888887 99999999999988888999
Q ss_pred HHHHHHHHHhhhcCCCcEEEEcC-CHHHHHHHHHHHHHhc
Q psy11425 269 RRILSANKEISYANKFDYIIINN-KFSKALLQLKAIINAN 307 (672)
Q Consensus 269 ~rl~~~~~e~~~~~~~D~VI~Nd-dle~a~~qL~~iI~~~ 307 (672)
.++..|....+.....|+||.|+ +++++.+++..++...
T Consensus 154 ~~~~~Q~~~~ek~~~ad~vi~n~~~i~~l~~~i~~~~~~~ 193 (201)
T COG0237 154 ARLASQRDLEEKLALADVVIDNDGSIENLLEQIEKLLKEL 193 (201)
T ss_pred HHHHhcCCHHHHHhhcCChhhcCCCHHHHHHHHHHHHHHH
Confidence 99999877666688999999999 6999999999988754
No 49
>PF01258 zf-dskA_traR: Prokaryotic dksA/traR C4-type zinc finger; InterPro: IPR000962 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents domains identified in zinc finger-containing members of the DksA/TraR family. DksA is a critical component of the rRNA transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP. In delta-dksA mutants, rRNA promoters are unresponsive to changes in amino acid availability, growth rate, or growth phase. In vitro, DksA binds to RNAP, reduces open complex lifetime, inhibits rRNA promoter activity, and amplifies effects of ppGpp and the initiating NTP on rRNA transcription [, ]. The dksA gene product suppresses the temperature-sensitive growth and filamentation of a dnaK deletion mutant of Escherichia coli. Gene knockout [] and deletion [] experiments have shown the gene to be non-essential, mutations causing a mild sensitivity to UV light, but not affecting DNA recombination []. In Pseudomonas aeruginosa, dksA is a novel regulator involved in the post-transcriptional control of extracellular virulence factor production []. The proteins contain a C-terminal region thought to fold into a 4-cysteine zinc finger. Other proteins found to contain a similar zinc finger domain include: the traR gene products encoded on the E. coli F and R100 plasmids [, ] the traR gene products encoded on Salmonella spp. plasmids pED208 and pSLT the dnaK suppressor hypothetical proteins from bacteria and bacteriophage FHL4, LIM proteins from Homo sapiens (Human) and Mus musculus (Mouse) [] More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2GVI_A 2KQ9_A 2KGO_A 1TJL_I.
Probab=99.17 E-value=1.2e-11 Score=89.30 Aligned_cols=36 Identities=53% Similarity=0.783 Sum_probs=29.9
Q ss_pred CCCCCcCccCCcchhhhhhhCCCccchhHHhhhhhh
Q psy11425 83 KEYGWCKDTGEPIGILRLLAKPMATLSLEAQQRHEL 118 (672)
Q Consensus 83 gtyG~C~~Cge~Ip~~RL~a~P~a~~C~~c~~~~E~ 118 (672)
|+||+|++||++||.+||.++|++++|++||+..|+
T Consensus 1 g~yg~C~~CGe~I~~~Rl~~~p~~~~C~~C~~~~e~ 36 (36)
T PF01258_consen 1 GSYGICEDCGEPIPEERLVAVPGATLCVECQERRER 36 (36)
T ss_dssp T--SB-TTTSSBEEHHHHHHCTTECS-HHHHHHHH-
T ss_pred CCCCCccccCChHHHHHHHhCCCcEECHHHhCcccC
Confidence 789999999999999999999999999999998774
No 50
>PRK01184 hypothetical protein; Provisional
Probab=99.15 E-value=1.3e-09 Score=107.41 Aligned_cols=163 Identities=19% Similarity=0.225 Sum_probs=92.5
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcch
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSF 207 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~ 207 (672)
++|+|+|||||||||+++.+.+.+.. .......-|..-. ..|.... .+.|...... +.+ .|+...
T Consensus 2 ~~i~l~G~~GsGKsT~a~~~~~~g~~-~i~~~d~lr~~~~--~~~~~~~---~~~~g~~~~~--~~~-------~~~~~~ 66 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSKIAREMGIP-VVVMGDVIREEVK--KRGLEPT---DENIGKVAID--LRK-------ELGMDA 66 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHHcCCc-EEEhhHHHHHHHH--HcCCCCC---cHHHHHHHHH--HHH-------HHChHH
Confidence 58999999999999999855444311 1222222222100 0111111 1233332211 110 121111
Q ss_pred --HHHHHHHh--cCCeEEEEee--HHHHHHHHHhCC-CcEEEEEeCCCHHHHHHHHHHcCCC----CHHHHHHHHHHHHH
Q psy11425 208 --FPIVREIK--SNVDILLEID--FQGAKQIKKKFP-NAIGIFILPPSLDSLKERLYKRGQD----KYDVISRRILSANK 276 (672)
Q Consensus 208 --~~I~~~l~--~G~~vIldi~--~~g~~~l~~~~~-~~~vIfI~~ps~e~l~~RL~~Rg~~----~~e~i~~rl~~~~~ 276 (672)
..+...+. .+..+|+|+. +.-+..+++.++ ...+|+|.+| .+++.+|+..|+.. +.+.+..|+..+..
T Consensus 67 ~~~~~~~~i~~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~-~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~ 145 (184)
T PRK01184 67 VAKRTVPKIREKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAP-PEVRFERLKKRGRSDDPKSWEELEERDERELS 145 (184)
T ss_pred HHHHHHHHHHhcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECC-HHHHHHHHHHcCCCCChhhHHHHHHHHHHHhc
Confidence 11112222 2567888874 333344555444 3467888876 99999999998742 34667777666532
Q ss_pred --HhhhcCCCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 277 --EISYANKFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 277 --e~~~~~~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
..++...+|++|.|+ +++++..++..+++.
T Consensus 146 ~~~~~~~~~ad~vI~N~~~~~~l~~~v~~~~~~ 178 (184)
T PRK01184 146 WGIGEVIALADYMIVNDSTLEEFRARVRKLLER 178 (184)
T ss_pred cCHHHHHHhcCEEEeCCCCHHHHHHHHHHHHHH
Confidence 223456899999998 699999999998864
No 51
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.15 E-value=8.5e-11 Score=117.85 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=58.9
Q ss_pred CcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcCCCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 238 NAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 238 ~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~~~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
...+|||.+| .+++.+|+..|+..+.+.+..|+..+.....+...+|+||.|+ ++++++.++..+++.
T Consensus 126 ~D~vi~V~a~-~e~ri~Rl~~R~g~s~e~~~~ri~~Q~~~~~k~~~ad~vI~N~g~~e~l~~~v~~~~~~ 194 (200)
T PRK14734 126 MDLVVVVDVD-VEERVRRLVEKRGLDEDDARRRIAAQIPDDVRLKAADIVVDNNGTREQLLAQVDGLIAE 194 (200)
T ss_pred CCeEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhcCCHHHHHHhCCEEEECcCCHHHHHHHHHHHHHH
Confidence 3567999986 9999999999877788999999999887776778999999999 699999999988754
No 52
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.15 E-value=1.7e-11 Score=120.82 Aligned_cols=162 Identities=18% Similarity=0.127 Sum_probs=89.6
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCC--------CCCcccc----cCCHHHHHHHHHcCCchhHH
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGE--------KNGREYY----FTNIDNFKKLQKSGKFLEWA 196 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E--------~~G~dY~----fvs~~~F~~~i~~g~fle~~ 196 (672)
+|+|||+.||||||+++.|.+.+..+..+......--.++. ..|.++. .+++..+...+-++.- ...
T Consensus 2 iIglTG~igsGKStv~~~l~~~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~-~~~ 80 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAELGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPE-KLK 80 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHHTT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHH-HHH
T ss_pred EEEEECCCcCCHHHHHHHHHHCCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHH-HHH
Confidence 79999999999999999999976332222211111111111 1122221 2456666655533221 011
Q ss_pred hHhccccCcchHHHHHHHhc---CCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy11425 197 EVHGNFYGTSFFPIVREIKS---NVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILS 273 (672)
Q Consensus 197 ~~~g~~YGt~~~~I~~~l~~---G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~ 273 (672)
..+.-.+......+...+.. .+.+++++ ..+.+.........+|+|.+| .+++.+|+++|+..+.+.+..|+.+
T Consensus 81 ~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~--pLL~E~~~~~~~D~vi~V~a~-~e~ri~Rl~~R~~~~~~~~~~ri~~ 157 (180)
T PF01121_consen 81 KLENIIHPLIREEIEKFIKRNKSEKVVVVEI--PLLFESGLEKLCDEVIVVYAP-EEIRIKRLMERDGLSEEEAEARIAS 157 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHSTSEEEEE---TTTTTTTGGGGSSEEEEEE---HHHHHHHHHHHHTSTHHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHHHHHHhccCCCEEEEEc--chhhhhhHhhhhceEEEEECC-HHHHHHHHHhhCCCcHHHHHHHHHh
Confidence 11111122222233333332 25566654 222222222224567999987 9999999999988899999999999
Q ss_pred HHHHhhhcCCCcEEEEcCC-HH
Q psy11425 274 ANKEISYANKFDYIIINNK-FS 294 (672)
Q Consensus 274 ~~~e~~~~~~~D~VI~Ndd-le 294 (672)
|.........+|+||.|+. ++
T Consensus 158 Q~~~~~k~~~ad~vI~N~g~~~ 179 (180)
T PF01121_consen 158 QMPDEEKRKRADFVIDNNGSLE 179 (180)
T ss_dssp S--HHHHHHH-SEEEE-SSHHH
T ss_pred CCCHHHHHHhCCEEEECCCCCC
Confidence 9988888899999999994 54
No 53
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.15 E-value=7.1e-10 Score=110.55 Aligned_cols=170 Identities=15% Similarity=0.080 Sum_probs=98.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHH--cCCchhHHh---Hhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQK--SGKFLEWAE---VHG 200 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~--~g~fle~~~---~~g 200 (672)
++++|+|.|++||||||+++.|.+.....+. ..++++.|+. .. ..+.|...+. ...+..+.. +..
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~-~~~~~~~p~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGR-DVVFTREPGG-TP--------LGEKLRELLLDPNEEMDDKTELLLFYA 71 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCC-ceeEeeCCCC-Ch--------HHHHHHHHHhccccCCCHHHHHHHHHH
Confidence 4689999999999999999999886532221 2244555542 11 1244555543 233433332 223
Q ss_pred cccCcchHHHHHHHhcCCeEEEE------eeHH---------HHHHHHHhC---C-CcEEEEEeCCCHHHHHHHHHHcCC
Q psy11425 201 NFYGTSFFPIVREIKSNVDILLE------IDFQ---------GAKQIKKKF---P-NAIGIFILPPSLDSLKERLYKRGQ 261 (672)
Q Consensus 201 ~~YGt~~~~I~~~l~~G~~vIld------i~~~---------g~~~l~~~~---~-~~~vIfI~~ps~e~l~~RL~~Rg~ 261 (672)
..|+.....+...+..|.++|+| +.++ .+..+.... + -..+||+.+| ++++.+|+..|+.
T Consensus 72 ~r~~~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~-~~~~~~Rl~~R~~ 150 (205)
T PRK00698 72 ARAQHLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVP-PEVGLARIRARGE 150 (205)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHHHhcCC
Confidence 44555555556666778889988 2121 222333221 2 2356888876 7999999999974
Q ss_pred CCHH-----HHHHHHHHHHHHhhhcCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 262 DKYD-----VISRRILSANKEISYANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 262 ~~~e-----~i~~rl~~~~~e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
.+.. ....++......+.....++++++|+ +++++.++|.++|.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~i~~ 202 (205)
T PRK00698 151 LDRIEQEGLDFFERVREGYLELAEKEPERIVVIDASQSLEEVHEDILAVIKA 202 (205)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 3211 22334433222222122345555554 599999999998864
No 54
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.15 E-value=2e-10 Score=113.74 Aligned_cols=62 Identities=19% Similarity=0.144 Sum_probs=53.5
Q ss_pred cEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcCCCcEEEEcC-CHHHHHHHHH
Q psy11425 239 AIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINN-KFSKALLQLK 301 (672)
Q Consensus 239 ~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~~~~D~VI~Nd-dle~a~~qL~ 301 (672)
..+|||.+| .+++.+|+..|+..+.+.+.+|+.++.........+|+||.|+ +++++..++.
T Consensus 125 D~vv~V~~~-~~~~~~Rl~~R~~~s~~~~~~r~~~q~~~~~~~~~ad~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 125 DRVIVVDVS-PQLQLERLMQRDNLTEEEVQKRLASQMDIEERLARADDVIDNSATLADLVKQLE 187 (188)
T ss_pred CEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhcCCHHHHHHhCCEEEECCCCHHHHHHHHh
Confidence 456888876 9999999999988889999999999876666777899999999 6999988875
No 55
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.12 E-value=3.2e-10 Score=111.58 Aligned_cols=159 Identities=17% Similarity=0.101 Sum_probs=90.1
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccC-CCC--------CCCCcccc----cCCHHHHHHHHHcCCchhH
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPM-RPG--------EKNGREYY----FTNIDNFKKLQKSGKFLEW 195 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~-r~~--------E~~G~dY~----fvs~~~F~~~i~~g~fle~ 195 (672)
+|+|||++||||||+++.|.+.+..+..+ ....+.. .++ +..|..+. .+++..+.+.+..+.-. .
T Consensus 1 ii~itG~~gsGKst~~~~l~~~g~~~i~~-D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~-~ 78 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKELGIPVIDA-DKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEK-R 78 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCEEec-CHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHH-H
Confidence 58999999999999999999854222111 1222111 111 01122221 23444444443221100 0
Q ss_pred HhHhccccCcchHHHHHHHhc---CCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHH
Q psy11425 196 AEVHGNFYGTSFFPIVREIKS---NVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRIL 272 (672)
Q Consensus 196 ~~~~g~~YGt~~~~I~~~l~~---G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~ 272 (672)
...+.-.+......+...+.. ...+++++ ..+.+.........+|||.+| ++++.+|+..|+..+.+.+..|+.
T Consensus 79 ~~l~~i~hp~i~~~~~~~~~~~~~~~~vive~--plL~e~~~~~~~D~vv~V~a~-~~~ri~Rl~~Rd~~s~~~~~~r~~ 155 (179)
T cd02022 79 KKLEAITHPLIRKEIEEQLAEARKEKVVVLDI--PLLFETGLEKLVDRVIVVDAP-PEIQIERLMKRDGLSEEEAEARIA 155 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCEEEEEe--hHhhcCCcHHhCCeEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 111122222223333333332 24555554 222221111223556999987 999999999998888899999999
Q ss_pred HHHHHhhhcCCCcEEEEcCC
Q psy11425 273 SANKEISYANKFDYIIINNK 292 (672)
Q Consensus 273 ~~~~e~~~~~~~D~VI~Ndd 292 (672)
.|.....+...+|+||.|+.
T Consensus 156 ~Q~~~~~~~~~aD~vI~N~~ 175 (179)
T cd02022 156 SQMPLEEKRARADFVIDNSG 175 (179)
T ss_pred hcCCHHHHHHhCCEEEECcC
Confidence 98777777889999999984
No 56
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.10 E-value=8e-10 Score=111.19 Aligned_cols=176 Identities=19% Similarity=0.164 Sum_probs=92.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCC--cee-ecccccccCC--CCCCCCcccccCCH-----HHHHH---HHHcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHK--IKL-SISTTTRPMR--PGEKNGREYYFTNI-----DNFKK---LQKSGK 191 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~--~~~-~v~~TTR~~r--~~E~~G~dY~fvs~-----~~F~~---~i~~g~ 191 (672)
..+.+|+|+|+||||||||++.|.+..+. +.+ ......+... +.+. ...+.|-.+ +.+.+ .+..+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 82 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEE-RVKTNYDHPDAFDHDLLIEHLKALKAGK 82 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHH-hcccCccCcccccHHHHHHHHHHHHcCC
Confidence 45679999999999999999999887631 111 1111111100 0000 001112111 12222 223343
Q ss_pred chhHHhHhccccCcchHHHHHHHhcCCeEEEEeeHHHH-HHHHHhCCCcEEEEEeCCCHHHHHHHHHHcC----CCCHHH
Q psy11425 192 FLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGA-KQIKKKFPNAIGIFILPPSLDSLKERLYKRG----QDKYDV 266 (672)
Q Consensus 192 fle~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~-~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg----~~~~e~ 266 (672)
-+.+..|+..........+ .+.....+|+++-+... ..+.. . ...+|||.+| .+++.+|...|. ..+.+.
T Consensus 83 ~v~~p~~d~~~~~~~~~~~--~~~~~~~vivEg~~l~~~~~~~~-~-~d~~I~v~~~-~~~~~~R~~~Rd~~~rg~~~e~ 157 (209)
T PRK05480 83 AIEIPVYDYTEHTRSKETI--RVEPKDVIILEGILLLEDERLRD-L-MDIKIFVDTP-LDIRLIRRLKRDVNERGRSLES 157 (209)
T ss_pred ccccCcccccccccCCCeE--EeCCCCEEEEEeehhcCchhHhh-h-hceeEEEeCC-hhHHHHHHHhhcchhcCCCHHH
Confidence 3333222211111000000 12334567788766543 23332 2 3456999987 777777777765 345666
Q ss_pred HHHHHHHHHH------HhhhcCCCcEEEEcC-----CHHHHHHHHHHHHHh
Q psy11425 267 ISRRILSANK------EISYANKFDYIIINN-----KFSKALLQLKAIINA 306 (672)
Q Consensus 267 i~~rl~~~~~------e~~~~~~~D~VI~Nd-----dle~a~~qL~~iI~~ 306 (672)
+..++..+.. ...+...+|+||.|+ +++.+..+|..+++.
T Consensus 158 ~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~~~~~~~~~~l~~~i~~~~~~ 208 (209)
T PRK05480 158 VINQYLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKAKIRQLLEK 208 (209)
T ss_pred HHHHHHHhhhhhHHhhccHhhcceeEEecCCCcchHHHHHHHHHHHHHhhc
Confidence 6666655433 134567899999976 377777777776643
No 57
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=99.05 E-value=3.7e-10 Score=120.09 Aligned_cols=121 Identities=17% Similarity=0.128 Sum_probs=94.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCC---------ceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhH
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHK---------IKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEW 195 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~---------~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~ 195 (672)
.++++|+|+||+|||||||+..|.+.+.. ++..++++|++|+++|.+|++|||++...|...+..+.|+++
T Consensus 2 ~~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~ 81 (307)
T PRK00091 2 MKPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRD 81 (307)
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHH
Confidence 45689999999999999999999988643 567778999999999999999999999999888888888887
Q ss_pred HhHhccccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcC
Q psy11425 196 AEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRG 260 (672)
Q Consensus 196 ~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg 260 (672)
. ...+..+..+|+++|+++-...+.+.. ...+ +..|++.+.+.+|+..+.
T Consensus 82 a----------~~~i~~i~~~gk~pIlvGGt~~Y~~al---~~g~--~~~p~~~~~~r~~l~~~~ 131 (307)
T PRK00091 82 A----------LAAIADILARGKLPILVGGTGLYIKAL---LEGL--SPLPPADPELRAELEALA 131 (307)
T ss_pred H----------HHHHHHHHhCCCCEEEECcHHHHHHHh---ccCC--CCCCCCCHHHHHHHHHHH
Confidence 5 456777888899988886554432211 1221 245777778888887664
No 58
>PRK06762 hypothetical protein; Provisional
Probab=99.02 E-value=4.5e-09 Score=101.65 Aligned_cols=149 Identities=15% Similarity=0.081 Sum_probs=85.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCC-CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYG 204 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YG 204 (672)
|+++|+|+|+|||||||+++.|.+..+ ++.+. +.+.+...+..+. .......+.
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i---------------------~~D~~r~~l~~~~----~~~~~~~~~ 55 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLV---------------------SQDVVRRDMLRVK----DGPGNLSID 55 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEe---------------------cHHHHHHHhcccc----CCCCCcCHH
Confidence 678999999999999999999988753 22221 1222222111000 000000000
Q ss_pred cchHHHHHHHhcCCeEEEEeeH------HHHHHHHHhCC-CcEEEEEeCCCHHHHHHHHHHcCCC---CHHHHHHHHHHH
Q psy11425 205 TSFFPIVREIKSNVDILLEIDF------QGAKQIKKKFP-NAIGIFILPPSLDSLKERLYKRGQD---KYDVISRRILSA 274 (672)
Q Consensus 205 t~~~~I~~~l~~G~~vIldi~~------~g~~~l~~~~~-~~~vIfI~~ps~e~l~~RL~~Rg~~---~~e~i~~rl~~~ 274 (672)
.....+...++.|..+|++... ..+..+..... ...+||+.+| .++..+|...|+.. +.+.++.++..
T Consensus 56 ~~~~~~~~~~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap-~e~~~~R~~~R~~~~~~~~~~l~~~~~~- 133 (166)
T PRK06762 56 LIEQLVRYGLGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLS-FEETLRRHSTRPKSHEFGEDDMRRWWNP- 133 (166)
T ss_pred HHHHHHHHHHhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCC-HHHHHHHHhcccccccCCHHHHHHHHhh-
Confidence 0112223345678888888643 12344544444 3467888876 88999999988652 23444433322
Q ss_pred HHHhhhcCCCcEEEEcCC--HHHHHHHHHHHH
Q psy11425 275 NKEISYANKFDYIIINNK--FSKALLQLKAII 304 (672)
Q Consensus 275 ~~e~~~~~~~D~VI~Ndd--le~a~~qL~~iI 304 (672)
..-...++.+|++++ +++...++...+
T Consensus 134 ---~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 162 (166)
T PRK06762 134 ---HDTLGVIGETIFTDNLSLKDIFDAILTDI 162 (166)
T ss_pred ---cCCcCCCCeEEecCCCCHHHHHHHHHHHh
Confidence 221134788887774 888888887765
No 59
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.98 E-value=1.4e-08 Score=111.97 Aligned_cols=233 Identities=13% Similarity=0.037 Sum_probs=129.3
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCC--------CCCCcccc----cCCHHHHHHHHHcCCchhH
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPG--------EKNGREYY----FTNIDNFKKLQKSGKFLEW 195 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~--------E~~G~dY~----fvs~~~F~~~i~~g~fle~ 195 (672)
+.|+|||++||||||+++.|.+.+..+..+......--.++ +..|..+. -+++..+.+.+..+.- ..
T Consensus 2 ~~IgltG~igsGKStv~~~L~~~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~-~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAELGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDE-AR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHHCCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHH-HH
Confidence 46999999999999999999886432222211111000011 01121110 1344444444322110 01
Q ss_pred HhHhccccCcchHHHHHHHh--cCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy11425 196 AEVHGNFYGTSFFPIVREIK--SNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILS 273 (672)
Q Consensus 196 ~~~~g~~YGt~~~~I~~~l~--~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~ 273 (672)
...+...+......+...++ .+..+++. +...+.+.........+|||.+| .+++.+|+..|...+.+.+..++..
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~-eipLL~E~~~~~~~D~iI~V~ap-~e~ri~Rl~~rRg~s~~~a~~ri~~ 158 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAAPEDAVVVE-DIPLLVESGMAPLFHLVVVVDAD-VEVRVRRLVEQRGMAEADARARIAA 158 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCEEEE-EeeeeecCCchhhCCEEEEEECC-HHHHHHHHHhcCCCCHHHHHHHHHh
Confidence 11122222222222333333 23333333 22222222111223567999987 9999999998655677777888888
Q ss_pred HHHHhhhcCCCcEEEEcC-CHHHHHHHHHHHHHhcccccccccchhhhhhhhcchhHHHHHHHHhhhhhcCCCccccccc
Q psy11425 274 ANKEISYANKFDYIIINN-KFSKALLQLKAIINANRCFMARVTIEDGLKKINNRFKLTLCAVYRARQLLKGHTKKIIGCD 352 (672)
Q Consensus 274 ~~~e~~~~~~~D~VI~Nd-dle~a~~qL~~iI~~~~~~m~r~~~~~~~~~~~~~y~l~~~~~~~a~~~~~~~~~~~~~~~ 352 (672)
+.........+|++|.|+ +++++..++..+++. |.+=+++--|++.=...++-.+..|+
T Consensus 159 Q~~~e~k~~~AD~vIdN~~s~e~l~~~v~~~l~~--------------------~~~~~~~~~~~~~~~~~~~v~v~~yd 218 (395)
T PRK03333 159 QASDEQRRAVADVWLDNSGTPDELVEAVRALWAD--------------------RLLPFAHNLRARRRAARAPPRLVPAD 218 (395)
T ss_pred cCChHHHHHhCCEEEECCCCHHHHHHHHHHHHHH--------------------HHhhHHHHHhcCCCCCCCCceEeCCC
Confidence 766666677899999999 699999999888764 33334555566665566665556666
Q ss_pred CCCcchhhhhhhcCcCccccchHHHHHHHHHHHHHHhhCCCceEEEEeeccC
Q psy11425 353 NDKVTVIALREISHGKIGVEIRLAIWQAEYVRKKIIELYPWCKVEILGITTK 404 (672)
Q Consensus 353 ~~k~~~~a~~~~~~~~v~r~S~LAl~Q~~~v~~~l~~~~p~~~~e~~~i~t~ 404 (672)
..=| .+-+..+..|+...++.-+.|..|=+|
T Consensus 219 p~W~---------------------~~f~~e~~~l~~~l~~~~~~IeHIGST 249 (395)
T PRK03333 219 PSWP---------------------AQAQRIVARLKTAAGHKALRVDHIGST 249 (395)
T ss_pred CCcH---------------------HHHHHHHHHHHHhcCccceEEEEeccC
Confidence 5433 134455667777665555666666544
No 60
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.96 E-value=1.2e-08 Score=100.25 Aligned_cols=167 Identities=21% Similarity=0.266 Sum_probs=93.7
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTS 206 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~ 206 (672)
.++|+|+|||||||||+++.|.+.+...+.......|..-.+ +.. ........+..+.++....... ..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~----~l 71 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVAS---GSE----RGKQLQAIMESGDLVPLDTVLD----LL 71 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhc---CCH----HHHHHHHHHHCCCCCCHHHHHH----HH
Confidence 468999999999999999999887521122221212211000 000 0122223333343332211111 11
Q ss_pred hHHHHHHHhcCCeEEEEeeHHHHHHH---HHhCC-CcEEEEEeCCCHHHHHHHHHHcCC------CCHHHHHHHHHHHHH
Q psy11425 207 FFPIVREIKSNVDILLEIDFQGAKQI---KKKFP-NAIGIFILPPSLDSLKERLYKRGQ------DKYDVISRRILSANK 276 (672)
Q Consensus 207 ~~~I~~~l~~G~~vIldi~~~g~~~l---~~~~~-~~~vIfI~~ps~e~l~~RL~~Rg~------~~~e~i~~rl~~~~~ 276 (672)
.+.+...+..|..+|+|+.|....+. ..... ...+||+.+| .+.+.+|+..|+. ++.+.+.+|+.....
T Consensus 72 ~~~~~~~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~ 150 (188)
T TIGR01360 72 KDAMVAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCS-EDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYK 150 (188)
T ss_pred HHHHHcccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHH
Confidence 12222334467788999876554333 23333 2356778876 8999999998864 256777888876543
Q ss_pred Hh----h-hcCCCcEEEEcC--CHHHHHHHHHHHHH
Q psy11425 277 EI----S-YANKFDYIIINN--KFSKALLQLKAIIN 305 (672)
Q Consensus 277 e~----~-~~~~~D~VI~Nd--dle~a~~qL~~iI~ 305 (672)
.. . |....+++++|. ++++...+|...|+
T Consensus 151 ~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 186 (188)
T TIGR01360 151 ATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAID 186 (188)
T ss_pred hhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 22 2 333446666665 48999999988875
No 61
>PRK08233 hypothetical protein; Provisional
Probab=98.94 E-value=2.3e-08 Score=97.61 Aligned_cols=162 Identities=20% Similarity=0.173 Sum_probs=81.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGT 205 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt 205 (672)
++.+|+|+|+|||||||+++.|.+.++......-...+. ..++.........+...+ .+. ...
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~------------~~~~~~~~~~~~~~~~~~--~~~---~~~ 64 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDF------------DNCPEDICKWIDKGANYS--EWV---LTP 64 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEc------------ccCchhhhhhhhccCChh--hhh---hHH
Confidence 357999999999999999999998864221111111110 011111111111111000 000 000
Q ss_pred chHHHHHHHhcC--CeEEEEeeHHHHH-HHHHhCCCcEEEEEeCCCHHHHHHHHHHcCC--CCHHHHHHHHHHHHHH---
Q psy11425 206 SFFPIVREIKSN--VDILLEIDFQGAK-QIKKKFPNAIGIFILPPSLDSLKERLYKRGQ--DKYDVISRRILSANKE--- 277 (672)
Q Consensus 206 ~~~~I~~~l~~G--~~vIldi~~~g~~-~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~--~~~e~i~~rl~~~~~e--- 277 (672)
....+....... ..+|++..+.... .+.. .++ .+||+.+| .+++.+|+..|.. .+.+.+..++..+...
T Consensus 65 ~~~~l~~~~~~~~~~~vivd~~~~~~~~~~~~-~~d-~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~ 141 (182)
T PRK08233 65 LIKDIQELIAKSNVDYIIVDYPFAYLNSEMRQ-FID-VTIFIDTP-LDIAMARRILRDFKEDTGNEIHNDLKHYLNYARP 141 (182)
T ss_pred HHHHHHHHHcCCCceEEEEeeehhhccHHHHH-HcC-EEEEEcCC-HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 011222333333 3455565433222 2322 234 67999977 8887777766642 1222333334332211
Q ss_pred --h----hhcCCCcEEEEcC-CHHHHHHHHHHHHHhc
Q psy11425 278 --I----SYANKFDYIIINN-KFSKALLQLKAIINAN 307 (672)
Q Consensus 278 --~----~~~~~~D~VI~Nd-dle~a~~qL~~iI~~~ 307 (672)
. .+...++++|.|+ ++++..+++..++.+.
T Consensus 142 ~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l~~~ 178 (182)
T PRK08233 142 LYLEALHTVKPNADIVLDGALSVEEIINQIEEELYRR 178 (182)
T ss_pred HHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHHHhC
Confidence 1 1123578888776 6999999999998753
No 62
>PTZ00301 uridine kinase; Provisional
Probab=98.93 E-value=6.9e-09 Score=104.77 Aligned_cols=174 Identities=20% Similarity=0.107 Sum_probs=92.7
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC-----CC-c-eeecccccccCCCCCCC-CcccccCCHHHHHHH--------HHcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD-----HK-I-KLSISTTTRPMRPGEKN-GREYYFTNIDNFKKL--------QKSG 190 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~-----~~-~-~~~v~~TTR~~r~~E~~-G~dY~fvs~~~F~~~--------i~~g 190 (672)
-.+|+|+|||||||||+++.|.+.. +. . ..+.....+........ ...+.|.+++.|+-. ++.|
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 3799999999999999998876542 21 1 11111111111110000 113566666666532 3445
Q ss_pred CchhHHhHhccccCcchHHHHHHHhcCCeEEEEeeHHHH-HHHHHhCCCcEEEEEeCCCHHHHHHHHHH-----cCCCCH
Q psy11425 191 KFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGA-KQIKKKFPNAIGIFILPPSLDSLKERLYK-----RGQDKY 264 (672)
Q Consensus 191 ~fle~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~-~~l~~~~~~~~vIfI~~ps~e~l~~RL~~-----Rg~~~~ 264 (672)
.-++...|+...+...... ..+...+++|+++.+... ..++. ..+ +.|||.+| .++...|... ||...+
T Consensus 83 ~~i~~P~yd~~~~~~~~~~--~~i~p~~ViIvEGi~~l~~~~l~~-l~D-~~ifvd~~-~d~~~~Rr~~Rd~~~rG~~~e 157 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSDTA--VTMTPKSVLIVEGILLFTNAELRN-EMD-CLIFVDTP-LDICLIRRAKRDMRERGRTFE 157 (210)
T ss_pred CcccCCCcccccCCcCCce--EEeCCCcEEEEechhhhCCHHHHH-hCC-EEEEEeCC-hhHHHHHHHhhhHHhcCCCHH
Confidence 4444433432222111111 123456788889877642 33443 334 45999988 6666665554 444444
Q ss_pred HHHHHHHHHHH-HH----hhhcCCCcEEEEcC-CHHHHHHHHHHHHH
Q psy11425 265 DVISRRILSAN-KE----ISYANKFDYIIINN-KFSKALLQLKAIIN 305 (672)
Q Consensus 265 e~i~~rl~~~~-~e----~~~~~~~D~VI~Nd-dle~a~~qL~~iI~ 305 (672)
+.+.++..... .. ..+...+|+||.+. +.+.++.-+...|.
T Consensus 158 ~v~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~~~~~~~~~~~~~~ 204 (210)
T PTZ00301 158 SVIEQYEATVRPMYYAYVEPSKVYADIIVPSWKDNSVAVGVLRAKLN 204 (210)
T ss_pred HHHHHHHHhhcccHHHHcCccccCCcEEEcCCCcchHHHHHHHHHHH
Confidence 44444554321 11 24557899999877 46666666655554
No 63
>PRK06696 uridine kinase; Validated
Probab=98.87 E-value=1.4e-08 Score=103.53 Aligned_cols=169 Identities=14% Similarity=0.077 Sum_probs=82.7
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhcCC--Cceeec-c--cc--cccCC--CC--CCCCcccccCCHHHHHHHHHc--
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKKDH--KIKLSI-S--TT--TRPMR--PG--EKNGREYYFTNIDNFKKLQKS-- 189 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~--~~~~~v-~--~T--TR~~r--~~--E~~G~dY~fvs~~~F~~~i~~-- 189 (672)
....+.+|+|.|+|||||||+++.|.+..+ +....+ + .. ....| .+ ...|..+.-.+.+.|.+.+..
T Consensus 18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l 97 (223)
T PRK06696 18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPL 97 (223)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhc
Confidence 345678999999999999999999988753 111111 0 00 00000 00 111111122344445444322
Q ss_pred --CCchhHH-hHhccccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcC----CC
Q psy11425 190 --GKFLEWA-EVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRG----QD 262 (672)
Q Consensus 190 --g~fle~~-~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg----~~ 262 (672)
+....+. ..+...++.........+..+.++|+++.+..-..+. .....+|||.+| .+++.+|+..|. ..
T Consensus 98 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~~~--~~~d~~i~v~~~-~e~~~~R~~~Rd~~~~g~ 174 (223)
T PRK06696 98 GPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELR--DLWDYKIFLDTD-FEVSRRRGAKRDTEAFGS 174 (223)
T ss_pred cCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhhHH--hhCCEEEEEECC-HHHHHHHHHHhhhhhhCC
Confidence 1111110 0111122221111111234466788887553222222 223467999987 899999998875 22
Q ss_pred CHHHHHHHHHHHH-HHhhh------cCCCcEEEEcCCHH
Q psy11425 263 KYDVISRRILSAN-KEISY------ANKFDYIIINNKFS 294 (672)
Q Consensus 263 ~~e~i~~rl~~~~-~e~~~------~~~~D~VI~Nddle 294 (672)
..+.......+.. .+..| ...+|+||.|++..
T Consensus 175 ~~~~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~~~ 213 (223)
T PRK06696 175 YEEAEKMYLARYHPAQKLYIAEANPKERADVVIDNSDPA 213 (223)
T ss_pred chHHHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCCCC
Confidence 2223332222221 11122 46799999999743
No 64
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.86 E-value=1.7e-08 Score=101.44 Aligned_cols=171 Identities=19% Similarity=0.105 Sum_probs=96.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCC-C---------ceeecccccccCCCCCCCCcccccCCHHHHHHH--------H
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDH-K---------IKLSISTTTRPMRPGEKNGREYYFTNIDNFKKL--------Q 187 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~-~---------~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~--------i 187 (672)
+..+|+|+|+|||||||+++.|.+.+. . |+...+++.... -..++|..++.|+-. +
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~------~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEE------RNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhh------cCCcCccChhhhcHHHHHHHHHHH
Confidence 447999999999999999999999874 2 222222222111 223556667776633 3
Q ss_pred HcCCchhHHhHhccccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHH----HcCCCC
Q psy11425 188 KSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLY----KRGQDK 263 (672)
Q Consensus 188 ~~g~fle~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~----~Rg~~~ 263 (672)
.+|+-+....|+-..+-...+. ..+....++|+++-+....+-..... .+-|||+++....+.+|+. .||++-
T Consensus 81 ~~g~~v~~P~yd~~~~~r~~~~--i~~~p~~VVIvEGi~~l~d~~lr~~~-d~kIfvdtd~D~RliRri~RD~~~rg~~~ 157 (218)
T COG0572 81 KQGKPVDLPVYDYKTHTREPET--IKVEPNDVVIVEGILLLYDERLRDLM-DLKIFVDTDADVRLIRRIKRDVQERGRDL 157 (218)
T ss_pred HcCCcccccccchhcccccCCc--cccCCCcEEEEecccccccHHHHhhc-CEEEEEeCCccHHHHHHHHHHHHHhCCCH
Confidence 4555544433332211111111 22445677888876555442222233 4459999986666666665 477776
Q ss_pred HHHHHHHHHHH-HHHh----hhcCCCcEEEEcC-CHHHHHHHHHHHHH
Q psy11425 264 YDVISRRILSA-NKEI----SYANKFDYIIINN-KFSKALLQLKAIIN 305 (672)
Q Consensus 264 ~e~i~~rl~~~-~~e~----~~~~~~D~VI~Nd-dle~a~~qL~~iI~ 305 (672)
+..++++...- .+.. ...+++|.+|.-. .-.-++..+...|.
T Consensus 158 e~vi~qy~~~vkp~~~~fIeptk~~ADiiip~~~~n~vav~~l~~~I~ 205 (218)
T COG0572 158 ESVIEQYVKTVRPMYEQFIEPTKKYADIIIPSGGKNEVAVDLLQAKIA 205 (218)
T ss_pred HHHHHHHHHhhChhhhhccCcccccceEEeecCCcceeehhHHHHHHH
Confidence 77777777442 2222 3456789988765 23333333444443
No 65
>PRK01099 rpoK DNA-directed RNA polymerase subunit K; Provisional
Probab=98.84 E-value=2e-09 Score=86.87 Aligned_cols=48 Identities=23% Similarity=0.087 Sum_probs=43.6
Q ss_pred hhcchhHHHHHHHHhhhhhcCCCcccccccCCCcchhhhhhhcCcCcc
Q psy11425 323 INNRFKLTLCAVYRARQLLKGHTKKIIGCDNDKVTVIALREISHGKIG 370 (672)
Q Consensus 323 ~~~~y~l~~~~~~~a~~~~~~~~~~~~~~~~~k~~~~a~~~~~~~~v~ 370 (672)
.-+||.++.+++||||||.+|++|+++.-.++|||.+|++||++|+|.
T Consensus 6 ~ltrfe~a~i~akRArQl~~Ga~~lv~~~~~~kPv~iAl~Ei~~gkI~ 53 (62)
T PRK01099 6 KLTRFERARIIGARALQISMGAPVLIDIPESTDPLDIAEEEFKRGVLP 53 (62)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCCceecCCCCCCHHHHHHHHHHcCCCC
Confidence 347899999999999999999999866548999999999999999996
No 66
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.84 E-value=2.5e-08 Score=100.36 Aligned_cols=176 Identities=20% Similarity=0.164 Sum_probs=89.7
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCCC--ceeecc---cccccCCCCCCCCcccccCCHHHHHH-----H---HHcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDHK--IKLSIS---TTTRPMRPGEKNGREYYFTNIDNFKK-----L---QKSG 190 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~--~~~~v~---~TTR~~r~~E~~G~dY~fvs~~~F~~-----~---i~~g 190 (672)
++.+.+|+|+|||||||||+++.|....+. ...... +.....+.. .....+.|-.+..|.. . +..|
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~l~~g 81 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEM-AERKKTNFDHPDAFDNDLLYEHLKNLKNG 81 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCH-HHhcCCCCCCccHhHHHHHHHHHHHHHCC
Confidence 456789999999999999999999876531 111110 000000000 0011223333333332 1 3344
Q ss_pred CchhHHhHhccccCcchHHHHHHHhcCCeEEEEeeHHHHHH-HHHhCCCcEEEEEeCCCHHHHHHHHHHc-----CCCCH
Q psy11425 191 KFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQ-IKKKFPNAIGIFILPPSLDSLKERLYKR-----GQDKY 264 (672)
Q Consensus 191 ~fle~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~-l~~~~~~~~vIfI~~ps~e~l~~RL~~R-----g~~~~ 264 (672)
.-+.+..|+.......... ..+.....+|+++.+..+.. +.. . ...+|||.+| .++...|+..| +....
T Consensus 82 ~~v~~p~yd~~~~~~~~~~--~~~~~~~~vIieG~~~~~~~~~~~-~-~d~~I~v~~~-~~~~l~R~~~R~~~~rg~~~~ 156 (207)
T TIGR00235 82 SPIDVPVYDYVNHTRPKET--VHIEPKDVVILEGIMPLFDERLRD-L-MDLKIFVDTP-LDIRLIRRIERDINERGRSLD 156 (207)
T ss_pred CCEecccceeecCCCCCce--EEeCCCCEEEEEehhhhchHhHHH-h-CCEEEEEECC-hhHHHHHHHHHHHHhhCCCHH
Confidence 4344333322111111111 11234567888876665432 322 2 3467999987 66666665544 44333
Q ss_pred HHHHHHHHHHHHH-----hhhcCCCcEEEEcC-CHHHHHHHHHHHHH
Q psy11425 265 DVISRRILSANKE-----ISYANKFDYIIINN-KFSKALLQLKAIIN 305 (672)
Q Consensus 265 e~i~~rl~~~~~e-----~~~~~~~D~VI~Nd-dle~a~~qL~~iI~ 305 (672)
+.+..+....... ......+|+||.|+ +.+.++.-+..-|.
T Consensus 157 ~~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~~~~~~~~~~~~~~ 203 (207)
T TIGR00235 157 SVIDQYRKTVRPMYEQFVEPTKQYADLIIPEGGRNEVAINVLDTKIK 203 (207)
T ss_pred HHHHHHHHhhhhhHHHhCcccccccEEEEcCCCCchHHHHHHHHHHH
Confidence 3333333322211 23456799999887 57888887766554
No 67
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.81 E-value=9.5e-08 Score=93.74 Aligned_cols=160 Identities=19% Similarity=0.240 Sum_probs=87.8
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchH
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFF 208 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~ 208 (672)
+|+|+|||||||||+++.|.+.+...+.+....-|..-.. +.. ........+..|..+.-... ..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~---~~~----~~~~~~~~~~~g~~~~~~~~--------~~ 65 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKS---GSE----NGELIESMIKNGKIVPSEVT--------VK 65 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhc---CCh----HHHHHHHHHHCCCcCCHHHH--------HH
Confidence 5899999999999999999998743444443333332110 100 01122222333332211000 11
Q ss_pred HHHHHHhc--CCeEEEEeeHHHHHHHH------HhC-CCcEEEEEeCCCHHHHHHHHHHcCC------CCHHHHHHHHHH
Q psy11425 209 PIVREIKS--NVDILLEIDFQGAKQIK------KKF-PNAIGIFILPPSLDSLKERLYKRGQ------DKYDVISRRILS 273 (672)
Q Consensus 209 ~I~~~l~~--G~~vIldi~~~g~~~l~------~~~-~~~~vIfI~~ps~e~l~~RL~~Rg~------~~~e~i~~rl~~ 273 (672)
-+...+.. +..+|+|+.|....+.. ... .-..+|++..| .+++.+|+..|+. ++.+.+.+|+..
T Consensus 66 ll~~~~~~~~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~-~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~ 144 (183)
T TIGR01359 66 LLKNAIQADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCP-EEVMIKRLLKRGQSSGRVDDNIESIKKRFRT 144 (183)
T ss_pred HHHHHHhccCCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhcCCccCCCCCCCHHHHHHHHHH
Confidence 12222322 56689998664432222 111 22346888876 8999999998863 346777787765
Q ss_pred HHHH----hhhcCCC-cE-EEEcC-CHHHHHHHHHHHH
Q psy11425 274 ANKE----ISYANKF-DY-IIINN-KFSKALLQLKAII 304 (672)
Q Consensus 274 ~~~e----~~~~~~~-D~-VI~Nd-dle~a~~qL~~iI 304 (672)
+... ..+.... -+ +|.++ ++++.++++.+++
T Consensus 145 y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 145 YNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 4332 2322222 23 45444 5899999988765
No 68
>PRK04182 cytidylate kinase; Provisional
Probab=98.80 E-value=9.4e-08 Score=93.03 Aligned_cols=156 Identities=19% Similarity=0.267 Sum_probs=82.1
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecc-cccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcc-
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSIS-TTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTS- 206 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~-~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~- 206 (672)
+|+|+|++||||||+++.|.+.. ++.+... ..-+..- +..|. +..+|......... +...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l-g~~~id~~~~~~~~~--~~~g~-----~~~~~~~~~~~~~~----------~~~~~ 63 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL-GLKHVSAGEIFRELA--KERGM-----SLEEFNKYAEEDPE----------IDKEI 63 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCcEecHHHHHHHHH--HHcCC-----CHHHHHHHhhcCch----------HHHHH
Confidence 79999999999999999998874 2222110 0000000 00011 11222211100000 0000
Q ss_pred hHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HH----h---
Q psy11425 207 FFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSAN-KE----I--- 278 (672)
Q Consensus 207 ~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~-~e----~--- 278 (672)
...+......+..+|+++....+ +.... ...+|||.+| ++.+.+|+..|+..+.......+.... .. .
T Consensus 64 ~~~~~~~~~~~~~~Vi~g~~~~~--~~~~~-~~~~V~l~a~-~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~ 139 (180)
T PRK04182 64 DRRQLEIAEKEDNVVLEGRLAGW--MAKDY-ADLKIWLKAP-LEVRAERIAEREGISVEEALEETIEREESEAKRYKEYY 139 (180)
T ss_pred HHHHHHHHhcCCCEEEEEeecce--EecCC-CCEEEEEECC-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11222223144566777643221 11111 3467899976 999999999987655554444333221 11 0
Q ss_pred ----hhcCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 279 ----SYANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 279 ----~~~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
...+.+|++|.++ +++++...|.+.+..
T Consensus 140 ~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~~~~ 173 (180)
T PRK04182 140 GIDIDDLSIYDLVINTSRWDPEGVFDIILTAIDK 173 (180)
T ss_pred CCCccccccccEEEECCCCCHHHHHHHHHHHHHH
Confidence 1125799999877 499999999888864
No 69
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.80 E-value=9.8e-08 Score=94.09 Aligned_cols=167 Identities=14% Similarity=0.073 Sum_probs=85.6
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcC------CchhHHhHhcc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSG------KFLEWAEVHGN 201 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g------~fle~~~~~g~ 201 (672)
++|+|.|++||||||+++.|.+....-++.+ .+++.|...+ ..+.+......+ .+.++.-+...
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEV-VLTREPGGTP---------IGEAIRELLLDPEDEKMDPRAELLLFAAD 70 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeE-EEEeCCCCCc---------hHHHHHHHHhccCccCCCHHHHHHHHHHH
Confidence 4799999999999999999988763222222 2333443221 012222222211 11111112222
Q ss_pred ccCcchHHHHHHHhcCCeEEEEe------e---------HHHHHHHHH---hCC-CcEEEEEeCCCHHHHHHHHHHcCCC
Q psy11425 202 FYGTSFFPIVREIKSNVDILLEI------D---------FQGAKQIKK---KFP-NAIGIFILPPSLDSLKERLYKRGQD 262 (672)
Q Consensus 202 ~YGt~~~~I~~~l~~G~~vIldi------~---------~~g~~~l~~---~~~-~~~vIfI~~ps~e~l~~RL~~Rg~~ 262 (672)
.+......+...+..|..+|+|= - ...+..+.. ..+ ...+||+.+| ++++.+|+..|+..
T Consensus 71 r~~~~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~ 149 (200)
T cd01672 71 RAQHVEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDID-PEVGLARIEARGRD 149 (200)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHHHhcCCc
Confidence 23333333444556788888881 1 112222221 112 2356777776 89999999999764
Q ss_pred CH-----HHHHHHHHHHHHHhhhcCCCcEEEEcC--CHHHHHHHHHHHHH
Q psy11425 263 KY-----DVISRRILSANKEISYANKFDYIIINN--KFSKALLQLKAIIN 305 (672)
Q Consensus 263 ~~-----e~i~~rl~~~~~e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~ 305 (672)
.. ....+++..............++++|. ++++..+++.+.|.
T Consensus 150 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 150 DRDEQEGLEFHERVREGYLELAAQEPERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence 32 122223222222221111234555555 48899999888764
No 70
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.79 E-value=9.6e-08 Score=92.27 Aligned_cols=154 Identities=20% Similarity=0.301 Sum_probs=82.6
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecc-cccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcch
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSIS-TTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSF 207 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~-~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~ 207 (672)
+|+|+|++||||||+++.|.+.. ++.+... ..-+..- +..|. +...|........-+ .....
T Consensus 2 iI~i~G~~GSGKstia~~la~~l-g~~~~~~~~~~~~~~--~~~g~-----~~~~~~~~~~~~~~~---------~~~~~ 64 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL-SLKLISAGDIFRELA--AKMGL-----DLIEFLNYAEENPEI---------DKKID 64 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCceecHHHHHHHHH--HHcCC-----CHHHHHHHHhcCcHH---------HHHHH
Confidence 79999999999999999998864 2211111 0000000 00011 122222111111000 00001
Q ss_pred HHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHh----h-h-
Q psy11425 208 FPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSAN-KEI----S-Y- 280 (672)
Q Consensus 208 ~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~-~e~----~-~- 280 (672)
..+......+..+|+++....+. + ...++ +.|||.+| ++.+.+|+..|+..+.+.+.+++.... .+. . |
T Consensus 65 ~~i~~~~~~~~~~Vi~g~~~~~~-~-~~~~d-~~v~v~a~-~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~ 140 (171)
T TIGR02173 65 RRIHEIALKEKNVVLESRLAGWI-V-REYAD-VKIWLKAP-LEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYG 140 (171)
T ss_pred HHHHHHHhcCCCEEEEeccccee-e-cCCcC-EEEEEECC-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11223333456777787543321 1 12233 67899986 999999999998777777776655432 111 1 1
Q ss_pred -----cCCCcEEEEcC--CHHHHHHHHHHHH
Q psy11425 281 -----ANKFDYIIINN--KFSKALLQLKAII 304 (672)
Q Consensus 281 -----~~~~D~VI~Nd--dle~a~~qL~~iI 304 (672)
...||++|.++ ++++ .+.|..++
T Consensus 141 ~~~~~~~~ydl~i~t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 141 IDIDDLSIYDLVINTSNWDPNN-VDIILDAL 170 (171)
T ss_pred CCccccccccEEEECCCCCHHH-HHHHHHHh
Confidence 14689888776 4888 88777654
No 71
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.79 E-value=1.5e-07 Score=89.60 Aligned_cols=156 Identities=22% Similarity=0.246 Sum_probs=87.0
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeec-ccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcch
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSI-STTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSF 207 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v-~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~ 207 (672)
+|.|.|||||||||+++.|.+.+ ++.+.- ..+-|..-. | .-.+-.+|.+..+.+--++. -+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~-gl~~vsaG~iFR~~A~-e------~gmsl~ef~~~AE~~p~iD~--------~iD~ 65 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL-GLKLVSAGTIFREMAR-E------RGMSLEEFSRYAEEDPEIDK--------EIDR 65 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh-CCceeeccHHHHHHHH-H------cCCCHHHHHHHHhcCchhhH--------HHHH
Confidence 68999999999999999999985 222211 111111100 0 01233444443332222221 1111
Q ss_pred HHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHH-HHHHHH----hhhc-
Q psy11425 208 FPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRI-LSANKE----ISYA- 281 (672)
Q Consensus 208 ~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl-~~~~~e----~~~~- 281 (672)
-+..+....+||++....++..- ....+-||+.+| .+++.+|+..|...+.++..+.+ ++...+ ..+.
T Consensus 66 --rq~e~a~~~nvVlegrLA~Wi~k---~~adlkI~L~Ap-l~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~Yg 139 (179)
T COG1102 66 --RQKELAKEGNVVLEGRLAGWIVR---EYADLKIWLKAP-LEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYG 139 (179)
T ss_pred --HHHHHHHcCCeEEhhhhHHHHhc---cccceEEEEeCc-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11222336678888877775322 223445899988 99999999999877665543332 222222 2222
Q ss_pred ------CCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 282 ------NKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 282 ------~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
..||+||... |.+.++.-|...+..
T Consensus 140 IDidDlSiyDLVinTs~~~~~~v~~il~~aid~ 172 (179)
T COG1102 140 IDIDDLSIYDLVINTSKWDPEEVFLILLDAIDA 172 (179)
T ss_pred CCCccceeeEEEEecccCCHHHHHHHHHHHHHh
Confidence 3588888665 466666666666654
No 72
>PRK14531 adenylate kinase; Provisional
Probab=98.78 E-value=2e-07 Score=91.94 Aligned_cols=163 Identities=17% Similarity=0.150 Sum_probs=90.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGT 205 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt 205 (672)
|.+.|+|+|||||||||+++.|.+.+...+++....-|..-. .+.. ....+...+..|.++.-.-
T Consensus 1 ~~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~---~~~~----~~~~~~~~~~~G~~v~d~l-------- 65 (183)
T PRK14531 1 MKQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVA---AGSA----LGQEAEAVMNRGELVSDAL-------- 65 (183)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHh---cCCH----HHHHHHHHHHcCCCCCHHH--------
Confidence 345699999999999999999988863223333233332110 1110 0112333334444322110
Q ss_pred chHHHHHHHh--cCCeEEEEeeHHHHHHHH------HhC-CC-cEEEEEeCCCHHHHHHHHHHcCC--CCHHHHHHHHHH
Q psy11425 206 SFFPIVREIK--SNVDILLEIDFQGAKQIK------KKF-PN-AIGIFILPPSLDSLKERLYKRGQ--DKYDVISRRILS 273 (672)
Q Consensus 206 ~~~~I~~~l~--~G~~vIldi~~~g~~~l~------~~~-~~-~~vIfI~~ps~e~l~~RL~~Rg~--~~~e~i~~rl~~ 273 (672)
....+...+. .+..+|+|+.|....+.. ... .. ..+|++.+| .+++.+|+..|++ ++++.+.+|+..
T Consensus 66 ~~~~~~~~l~~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~-~~~l~~Rl~~R~r~dD~~e~i~~Rl~~ 144 (183)
T PRK14531 66 VLAIVESQLKALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELD-DAVLIERLLARGRADDNEAVIRNRLEV 144 (183)
T ss_pred HHHHHHHHHhhccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECC-HHHHHHHhhcCCCCCCCHHHHHHHHHH
Confidence 0011111222 244578898775544332 111 12 346888876 9999999998865 456778889877
Q ss_pred HHHHh----hhcC-CCc-EEEEcC-CHHHHHHHHHHHH
Q psy11425 274 ANKEI----SYAN-KFD-YIIINN-KFSKALLQLKAII 304 (672)
Q Consensus 274 ~~~e~----~~~~-~~D-~VI~Nd-dle~a~~qL~~iI 304 (672)
+.... .|.. ..- ..|.++ +.++++.+|.+.+
T Consensus 145 y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 145 YREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred HHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 64432 2222 222 344444 5999999988765
No 73
>KOG3079|consensus
Probab=98.77 E-value=8.8e-08 Score=92.96 Aligned_cols=168 Identities=22% Similarity=0.290 Sum_probs=110.8
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhcccc
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFY 203 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~Y 203 (672)
+.++++|.+.|+|||||.|.+..++++++..|.+....-|..+..+ |.+|.+ .....+.+|.++.....
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~--gse~g~----~I~~~i~~G~iVP~ei~----- 73 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASA--GSERGA----LIKEIIKNGDLVPVEIT----- 73 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccc--cChHHH----HHHHHHHcCCcCcHHHH-----
Confidence 3568899999999999999999999998756677777666655443 444332 34455677777654321
Q ss_pred CcchHHHHHHHhc--C-CeEEEEeeHHHHHHHH---HhCC--CcEEEEEeCCCHHHHHHHHHHcCC------CCHHHHHH
Q psy11425 204 GTSFFPIVREIKS--N-VDILLEIDFQGAKQIK---KKFP--NAIGIFILPPSLDSLKERLYKRGQ------DKYDVISR 269 (672)
Q Consensus 204 Gt~~~~I~~~l~~--G-~~vIldi~~~g~~~l~---~~~~--~~~vIfI~~ps~e~l~~RL~~Rg~------~~~e~i~~ 269 (672)
..-+...+.+ + ...++|+-|.-..+.. +... -.+++|++++ .++..+|+..|+. ++.+.+++
T Consensus 74 ---~~LL~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~-ee~~l~Rll~R~q~~~R~DDn~esikk 149 (195)
T KOG3079|consen 74 ---LSLLEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCP-EETMLKRLLHRGQSNSRSDDNEESIKK 149 (195)
T ss_pred ---HHHHHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCC-HHHHHHHHHhhcccCCCCCCchHHHHH
Confidence 2223333332 1 1278888775554443 3332 3567889987 9999999997754 46688999
Q ss_pred HHHHHHHH----hhhcCCC-cEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 270 RILSANKE----ISYANKF-DYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 270 rl~~~~~e----~~~~~~~-D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
|++.+... +.|.+.- ...-+|. +.++.+.+|...|..
T Consensus 150 R~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 150 RLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred HHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence 99886432 3444332 2223343 699999999998864
No 74
>PRK14527 adenylate kinase; Provisional
Probab=98.77 E-value=1.9e-07 Score=92.73 Aligned_cols=164 Identities=17% Similarity=0.213 Sum_probs=88.7
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYG 204 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YG 204 (672)
+++++|+|+|||||||||+++.|.+.+...+......-|..-. .+.++ .......+..|.++...
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~---~~~~~----~~~~~~~~~~g~~~p~~-------- 68 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVA---RGTEL----GQRAKPIMEAGDLVPDE-------- 68 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHh---cCcHH----HHHHHHHHHcCCCCcHH--------
Confidence 4678999999999999999999988753222222111111000 00000 01111222223222210
Q ss_pred cchHHHHHHHhc--CCeEEEEeeHHHHHHH------HHhC-CC-cEEEEEeCCCHHHHHHHHHHcC------CCCHHHHH
Q psy11425 205 TSFFPIVREIKS--NVDILLEIDFQGAKQI------KKKF-PN-AIGIFILPPSLDSLKERLYKRG------QDKYDVIS 268 (672)
Q Consensus 205 t~~~~I~~~l~~--G~~vIldi~~~g~~~l------~~~~-~~-~~vIfI~~ps~e~l~~RL~~Rg------~~~~e~i~ 268 (672)
.....+...+.. +..+|+|+-|....+. .+.. .. ..+||+.+| .+++.+|+..|+ +++++.+.
T Consensus 69 ~~~~l~~~~l~~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~r~dd~~~~~~ 147 (191)
T PRK14527 69 LILALIRDELAGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVP-DEELIRRIVERARQEGRSDDNEETVR 147 (191)
T ss_pred HHHHHHHHHHhcCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHcCcccCCCCCCCHHHHH
Confidence 011122223332 3458888765433322 1221 22 345777876 899999999874 34567888
Q ss_pred HHHHHHHHHhh-----hcCCCcEEEEcC--CHHHHHHHHHHHH
Q psy11425 269 RRILSANKEIS-----YANKFDYIIINN--KFSKALLQLKAII 304 (672)
Q Consensus 269 ~rl~~~~~e~~-----~~~~~D~VI~Nd--dle~a~~qL~~iI 304 (672)
+|++.+..... |.+..-++.+|. +.++.+.+|...|
T Consensus 148 ~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 148 RRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred HHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 89887755432 333223444444 5999999988765
No 75
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.76 E-value=6.5e-08 Score=96.40 Aligned_cols=167 Identities=18% Similarity=0.137 Sum_probs=77.5
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCC--Ccee-eccccc--ccCCCC-CCCCcccccC---CHHHHHHH---HHcCCchhHH
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDH--KIKL-SISTTT--RPMRPG-EKNGREYYFT---NIDNFKKL---QKSGKFLEWA 196 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~--~~~~-~v~~TT--R~~r~~-E~~G~dY~fv---s~~~F~~~---i~~g~fle~~ 196 (672)
+|+|+|||||||||+++.|..... .... .....- ...+.. +..+..|.+- +-+.|... +..+..+.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 589999999999999999988742 1111 111000 000000 0011112111 11222222 2233333332
Q ss_pred hHhccccCcchHHHHHHHhcCCeEEEEeeHHHHH-HHHHhCCCcEEEEEeCCCHHHHHHHHHHcC----CCCHHHHHHHH
Q psy11425 197 EVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAK-QIKKKFPNAIGIFILPPSLDSLKERLYKRG----QDKYDVISRRI 271 (672)
Q Consensus 197 ~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~-~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg----~~~~e~i~~rl 271 (672)
.|+..........+ .+.....+|+++...+.. .+.. .. ..+|||.+| .+...+|...|. ..+.+.+..++
T Consensus 81 ~~d~~~~~~~~~~~--~i~~~~~vI~eg~~~~~~~~~~~-~~-d~~i~v~~~-~~~~~~R~~~Rd~~~rg~~~~~~~~~~ 155 (198)
T cd02023 81 VYDFKTHSRLKETV--TVYPADVIILEGILALYDKELRD-LM-DLKIFVDTD-ADVRLIRRIERDIVERGRDLESVINQY 155 (198)
T ss_pred ccccccCcccCCce--ecCCCCEEEEechhhccchhHHh-hc-CeEEEEECC-hhHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 22211111111111 233345677776654442 2322 23 456999987 666555554442 13344444444
Q ss_pred HHH-HHH-----hhhcCCCcEEEEcCC-HHHHHHHH
Q psy11425 272 LSA-NKE-----ISYANKFDYIIINNK-FSKALLQL 300 (672)
Q Consensus 272 ~~~-~~e-----~~~~~~~D~VI~Ndd-le~a~~qL 300 (672)
..+ ... ..+...+|+||.|++ .++++.-+
T Consensus 156 ~~~~~~~~~~~i~~~~~~aD~ii~~~~~~~~~~~~~ 191 (198)
T cd02023 156 LKFVKPMHEQFIEPTKRYADVIIPRGGDNHVAIDLI 191 (198)
T ss_pred HHhhhhhHHHhCccchhceeEEECCCCCccHHHHHH
Confidence 332 211 235667999999885 55555543
No 76
>PRK14530 adenylate kinase; Provisional
Probab=98.75 E-value=2.9e-07 Score=93.12 Aligned_cols=169 Identities=12% Similarity=0.135 Sum_probs=87.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGT 205 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt 205 (672)
+++.|+|+|||||||||+++.|.+.+...+......-|.... .+..+. +.........+..|.++.-. .
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~--~~~~~~-~~~~~~~~~~~~~g~~~~d~--------~ 70 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQ--MDISDM-DTEYDTPGEYMDAGELVPDA--------V 70 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhcc--CCcccc-cchHHHHHHHHHcCCCCCHH--------H
Confidence 456799999999999999999998863222333332222110 000000 00000011112222221110 0
Q ss_pred chHHHHHHHhcCCeEEEEeeHHHHHH---HHHhCCCcEEEEEeCCCHHHHHHHHHHc-----------------------
Q psy11425 206 SFFPIVREIKSNVDILLEIDFQGAKQ---IKKKFPNAIGIFILPPSLDSLKERLYKR----------------------- 259 (672)
Q Consensus 206 ~~~~I~~~l~~G~~vIldi~~~g~~~---l~~~~~~~~vIfI~~ps~e~l~~RL~~R----------------------- 259 (672)
....+...+......|+++-|....+ +........+||+.+| .+++.+|+..|
T Consensus 71 ~~~~l~~~l~~~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~-~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~ 149 (215)
T PRK14530 71 VNEIVEEALSDADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVS-EEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVC 149 (215)
T ss_pred HHHHHHHHHhcCCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCC-HHHHHHHHhCCCcCcccCCccccCCCCCcccccC
Confidence 01112223333445667764443322 2222223345667665 67777776544
Q ss_pred ----------CCCCHHHHHHHHHHHHHHh----h-hcCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 260 ----------GQDKYDVISRRILSANKEI----S-YANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 260 ----------g~~~~e~i~~rl~~~~~e~----~-~~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
.+++++.+++|+..+..+. . |.+..-++.+|. ++++.+++|..+|.+
T Consensus 150 ~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 213 (215)
T PRK14530 150 DECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD 213 (215)
T ss_pred cccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 4456788999998865432 2 223334555555 599999999998864
No 77
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.74 E-value=2e-07 Score=89.86 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=76.3
Q ss_pred EEEeCCCCCChHHHHHHHHhcCCCceeeccc-ccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchH
Q psy11425 130 FIISAPSGAGKSTLVNELLKKDHKIKLSIST-TTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFF 208 (672)
Q Consensus 130 IvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~-TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~ 208 (672)
|+|+||+||||||+++.|............. ..+........|..+...+. .+| +.....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~------------~~~-------~~~~~~ 61 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDR------------WPW-------LQNLND 61 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhH------------HHH-------HHHHHH
Confidence 5799999999999999998875322111100 00000000001111110000 011 111122
Q ss_pred HHHHHHhcCCeEEEEeeH---HHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHhhh--c
Q psy11425 209 PIVREIKSNVDILLEIDF---QGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQD--KYDVISRRILSANKEISY--A 281 (672)
Q Consensus 209 ~I~~~l~~G~~vIldi~~---~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~--~~e~i~~rl~~~~~e~~~--~ 281 (672)
.+...+..|..+|++... .....++.......+||+.+| .+++.+|+..|+.. ..+. +..+...... .
T Consensus 62 ~~~~~l~~~~~~Vi~~t~~~~~~r~~~~~~~~~~~~i~l~~~-~e~~~~R~~~R~~~~~~~~~----i~~~~~~~~~~~~ 136 (163)
T TIGR01313 62 ASTAAAAKNKVGIITCSALKRHYRDILREAEPNLHFIYLSGD-KDVILERMKARKGHFMKADM----LESQFAALEEPLA 136 (163)
T ss_pred HHHHHHhcCCCEEEEecccHHHHHHHHHhcCCCEEEEEEeCC-HHHHHHHHHhccCCCCCHHH----HHHHHHHhCCCCC
Confidence 333455567666666543 222223333344556777765 99999999999742 2233 3333222222 2
Q ss_pred CCCcEEEEcCC--HHHHHHHHHHHH
Q psy11425 282 NKFDYIIINNK--FSKALLQLKAII 304 (672)
Q Consensus 282 ~~~D~VI~Ndd--le~a~~qL~~iI 304 (672)
...+++++|++ .+++..++...|
T Consensus 137 ~e~~~~~id~~~~~~~~~~~~~~~~ 161 (163)
T TIGR01313 137 DETDVLRVDIDQPLEGVEEDCIAVV 161 (163)
T ss_pred CCCceEEEECCCCHHHHHHHHHHHH
Confidence 23466666653 788888877665
No 78
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.70 E-value=4.5e-07 Score=91.44 Aligned_cols=159 Identities=16% Similarity=0.172 Sum_probs=91.4
Q ss_pred EEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchHH
Q psy11425 130 FIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFP 209 (672)
Q Consensus 130 IvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~~ 209 (672)
|+|+|||||||||+++.|.+.+...+......-|..... +.. .-......+..|.++.-... ...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~---~~~----~~~~~~~~~~~g~~vp~~~~--------~~l 66 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKA---GTP----LGKKAKEYMEKGELVPDEIV--------NQL 66 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhcc---ccH----HHHHHHHHHhCCCCCCHHHH--------HHH
Confidence 789999999999999999987633333333333321110 000 01122233334443322111 112
Q ss_pred HHHHHhc----CCeEEEEeeHHHHHHH---HHhCC--CcEEEEEeCCCHHHHHHHHHHcC--------------------
Q psy11425 210 IVREIKS----NVDILLEIDFQGAKQI---KKKFP--NAIGIFILPPSLDSLKERLYKRG-------------------- 260 (672)
Q Consensus 210 I~~~l~~----G~~vIldi~~~g~~~l---~~~~~--~~~vIfI~~ps~e~l~~RL~~Rg-------------------- 260 (672)
+...+.+ +...|+|+-|....+. ..... -..+|++..| .+++.+|+..|.
T Consensus 67 ~~~~i~~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~ 145 (210)
T TIGR01351 67 VKERLTQNQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVP-DEELVERLSGRRICPSCGRVYHLKFNPPKVPG 145 (210)
T ss_pred HHHHHhcCcccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECC-HHHHHHHHHCCCccCCcCCccccccCCCccCC
Confidence 2233332 4568899876555433 33222 3456888876 889999998763
Q ss_pred -------------CCCHHHHHHHHHHHHHHh----hhc-CCCcEEEEcC--CHHHHHHHHHHHH
Q psy11425 261 -------------QDKYDVISRRILSANKEI----SYA-NKFDYIIINN--KFSKALLQLKAII 304 (672)
Q Consensus 261 -------------~~~~e~i~~rl~~~~~e~----~~~-~~~D~VI~Nd--dle~a~~qL~~iI 304 (672)
+++++.+++|+..+.... .|. ...-++.+|. +.++++.+|.++|
T Consensus 146 ~~~~~~~~l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 146 CDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred cCcccCCccccCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 246788999998875432 232 2333555554 5999999998876
No 79
>PLN02200 adenylate kinase family protein
Probab=98.69 E-value=6.1e-07 Score=92.27 Aligned_cols=166 Identities=21% Similarity=0.222 Sum_probs=91.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGT 205 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt 205 (672)
.+.+|+|+|+|||||||+++.|.+.+...+++....-|..-... .+ .-..+...+..|..+... .
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~---s~----~~~~i~~~~~~G~~vp~e-~------- 106 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASN---SE----HGAMILNTIKEGKIVPSE-V------- 106 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhcc---Ch----hHHHHHHHHHcCCCCcHH-H-------
Confidence 35689999999999999999999886333444433333211100 00 011222222233222210 0
Q ss_pred chHHHHHHHh--cCCeEEEEeeHHHHHHHH---HhC-C-CcEEEEEeCCCHHHHHHHHHHcCC----CCHHHHHHHHHHH
Q psy11425 206 SFFPIVREIK--SNVDILLEIDFQGAKQIK---KKF-P-NAIGIFILPPSLDSLKERLYKRGQ----DKYDVISRRILSA 274 (672)
Q Consensus 206 ~~~~I~~~l~--~G~~vIldi~~~g~~~l~---~~~-~-~~~vIfI~~ps~e~l~~RL~~Rg~----~~~e~i~~rl~~~ 274 (672)
....+...+. .+..+|+|+.|....+.. ... . -..+||+..| ++++.+|+..|+. ++.+.+.+|++.+
T Consensus 107 ~~~~l~~~l~~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~-~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y 185 (234)
T PLN02200 107 TVKLIQKEMESSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCP-EEEMVKRVLNRNQGRVDDNIDTIKKRLKVF 185 (234)
T ss_pred HHHHHHHHHhcCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECC-HHHHHHHHHcCcCCCCCCCHHHHHHHHHHH
Confidence 0011122222 234578998765443322 211 1 2256788876 8899999998742 3457778888765
Q ss_pred HHH----hhhc-CCCcEEEEcC--CHHHHHHHHHHHHHhc
Q psy11425 275 NKE----ISYA-NKFDYIIINN--KFSKALLQLKAIINAN 307 (672)
Q Consensus 275 ~~e----~~~~-~~~D~VI~Nd--dle~a~~qL~~iI~~~ 307 (672)
... ..|. ....++.+|. ++++++.++..++...
T Consensus 186 ~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~ 225 (234)
T PLN02200 186 NALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAAC 225 (234)
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 443 2322 2233444444 5999999999988653
No 80
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.68 E-value=1e-07 Score=95.44 Aligned_cols=175 Identities=15% Similarity=0.123 Sum_probs=90.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccC-CCCCCCCcccccC--------CHHHHHHHHHcCCchhHH
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPM-RPGEKNGREYYFT--------NIDNFKKLQKSGKFLEWA 196 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~-r~~E~~G~dY~fv--------s~~~F~~~i~~g~fle~~ 196 (672)
.+.+|+|+|+|||||||+++.|.+.........++..|.. |..-..+...+.. +++.....+. .|.+.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~--~y~~q- 78 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVK--GYLDQ- 78 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHH--HHHHH-
Confidence 3579999999999999999999887521112222221111 1000000001110 0000000000 01111
Q ss_pred hHhccccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHH-hCCCcEEEEEeCCCHHHHHHHHHHcCCCC--HHHHHHHHHH
Q psy11425 197 EVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKK-KFPNAIGIFILPPSLDSLKERLYKRGQDK--YDVISRRILS 273 (672)
Q Consensus 197 ~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~-~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~--~e~i~~rl~~ 273 (672)
....|......+...+.+|..+|++..+..-..+.. ......++|+..++++.+.+|+..|+.+. ....++.+++
T Consensus 79 --~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~~~~v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~~~ 156 (197)
T PRK12339 79 --ARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENRTNNIRAFYLYIRDAELHRSRLADRINYTHKNSPGKRLAEH 156 (197)
T ss_pred --HHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHhcCeEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHHHH
Confidence 112233334456677889999999974433222221 12345667777778999999999997432 1111222222
Q ss_pred H-------HHHhhhcCCCcE-EEEcCCHHHHHHHHHHHHH
Q psy11425 274 A-------NKEISYANKFDY-IIINNKFSKALLQLKAIIN 305 (672)
Q Consensus 274 ~-------~~e~~~~~~~D~-VI~Nddle~a~~qL~~iI~ 305 (672)
. ..-....+.++. +|.|.|++++.+.+.+.+.
T Consensus 157 ~~~ir~i~~~l~~~a~~~~i~~i~~~~~~~~~~~~~~~~~ 196 (197)
T PRK12339 157 LPEYRTIMDYSIADARGYNIKVIDTDNYREARNPLLDPIS 196 (197)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeecCccHHHHHHHHHHHhc
Confidence 1 111233445665 5666689999999877653
No 81
>PRK13946 shikimate kinase; Provisional
Probab=98.67 E-value=3.6e-07 Score=90.30 Aligned_cols=155 Identities=16% Similarity=0.106 Sum_probs=81.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGT 205 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt 205 (672)
+++.|+|+|++||||||+++.|.+.. ++.+........... |. +..++........| .-.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L-g~~~id~D~~~~~~~----g~-----~~~e~~~~~ge~~~----------~~~ 68 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML-GLPFLDADTEIERAA----RM-----TIAEIFAAYGEPEF----------RDL 68 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc-CCCeECcCHHHHHHh----CC-----CHHHHHHHHCHHHH----------HHH
Confidence 56789999999999999999999875 232222221111000 11 11111000000000 000
Q ss_pred chHHHHHHHhcCCeEEEEe-----eHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCC------CHHHHHHHHHHH
Q psy11425 206 SFFPIVREIKSNVDILLEI-----DFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQD------KYDVISRRILSA 274 (672)
Q Consensus 206 ~~~~I~~~l~~G~~vIldi-----~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~------~~e~i~~rl~~~ 274 (672)
....+...+..+..||... .+.....++ .+.++||+.+| ++++.+|+..|... +....-+.+...
T Consensus 69 e~~~l~~l~~~~~~Vi~~ggg~~~~~~~r~~l~---~~~~~v~L~a~-~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~ 144 (184)
T PRK13946 69 ERRVIARLLKGGPLVLATGGGAFMNEETRAAIA---EKGISVWLKAD-LDVLWERVSRRDTRPLLRTADPKETLARLMEE 144 (184)
T ss_pred HHHHHHHHHhcCCeEEECCCCCcCCHHHHHHHH---cCCEEEEEECC-HHHHHHHhcCCCCCCcCCCCChHHHHHHHHHH
Confidence 1223444455555444431 222222222 24577999987 99999999987542 111211222222
Q ss_pred HHHhhhcCCCcEEEEcCC--HHHHHHHHHHHHHh
Q psy11425 275 NKEISYANKFDYIIINNK--FSKALLQLKAIINA 306 (672)
Q Consensus 275 ~~e~~~~~~~D~VI~Ndd--le~a~~qL~~iI~~ 306 (672)
.. .+...+|++|.+++ ++++.+.|...|..
T Consensus 145 R~--~~y~~~dl~i~~~~~~~~~~~~~i~~~i~~ 176 (184)
T PRK13946 145 RY--PVYAEADLTVASRDVPKEVMADEVIEALAA 176 (184)
T ss_pred HH--HHHHhCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 21 22334899886664 89999999888865
No 82
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.67 E-value=4.1e-07 Score=87.72 Aligned_cols=157 Identities=17% Similarity=0.241 Sum_probs=84.6
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchH
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFF 208 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~ 208 (672)
.|+|||.||+||||+++.|.+.+..+... .+|. ...|-+.++.+ ....|-...+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~~lg~~~i~l-----------------------~el~--~e~~~~~~~de-~r~s~~vD~d 55 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLRELGYKVIEL-----------------------NELA--KENGLYTEYDE-LRKSVIVDVD 55 (180)
T ss_pred eEEEeCCCCCchHHHHHHHHHhCCceeeH-----------------------HHHH--HhcCCeeccCC-ccceEEeeHH
Confidence 69999999999999999999554221111 1110 11111111110 0011222233
Q ss_pred HHHHHHh---cCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh---hhcC
Q psy11425 209 PIVREIK---SNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEI---SYAN 282 (672)
Q Consensus 209 ~I~~~l~---~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~---~~~~ 282 (672)
.+...++ ....+|++..... ..+++-+|+|.-.+++.+.+||+.||.. ++.+...++...... +-..
T Consensus 56 ~~~~~le~~~~~~~~Ivd~H~~h------l~~~~dlVvVLR~~p~~L~~RLk~RGy~-~eKI~ENveAEi~~vi~~EA~E 128 (180)
T COG1936 56 KLRKRLEELLREGSGIVDSHLSH------LLPDCDLVVVLRADPEVLYERLKGRGYS-EEKILENVEAEILDVILIEAVE 128 (180)
T ss_pred HHHHHHHHHhccCCeEeechhhh------cCCCCCEEEEEcCCHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 3456777765433 2332333445445699999999999874 555666665544332 1112
Q ss_pred CCcEE----EEcCCHHHHHHHHHHHHHhcccccccccchhhh
Q psy11425 283 KFDYI----IINNKFSKALLQLKAIINANRCFMARVTIEDGL 320 (672)
Q Consensus 283 ~~D~V----I~Nddle~a~~qL~~iI~~~~~~m~r~~~~~~~ 320 (672)
.|+-+ +.|.+++++...|.++|... ++.++.+-|-+
T Consensus 129 ~~~~v~evdtt~~s~ee~~~~i~~ii~~~--~~~~~g~vd~~ 168 (180)
T COG1936 129 RFEAVIEVDTTNRSPEEVAEEIIDIIGGG--RKKRVGVVDWL 168 (180)
T ss_pred hcCceEEEECCCCCHHHHHHHHHHHHccc--ccCCCCCcchh
Confidence 22322 23336999999999999863 33344443333
No 83
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.67 E-value=3.9e-07 Score=88.03 Aligned_cols=68 Identities=9% Similarity=0.177 Sum_probs=42.7
Q ss_pred CcEEEEEeCCCHHHHHHHHHHcCCC---CHHHHHHHHHHH--HHHhhhcCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 238 NAIGIFILPPSLDSLKERLYKRGQD---KYDVISRRILSA--NKEISYANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 238 ~~~vIfI~~ps~e~l~~RL~~Rg~~---~~e~i~~rl~~~--~~e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
...+||+.+| ++.+.+|+..|... ..+.....+... .....|...+|++|..+ +++++.+.|.+.|+.
T Consensus 97 ~~~~v~l~~~-~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~idt~~~~~~e~~~~I~~~v~~ 171 (175)
T PRK00131 97 RGTVVYLDAS-FEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPLYEEVADITVETDGRSPEEVVNEILEKLEA 171 (175)
T ss_pred CCEEEEEECC-HHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCeEEeCCCCCHHHHHHHHHHHHHh
Confidence 4567899876 88899999876431 101111222211 11223456699999866 589999999998863
No 84
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.65 E-value=2.1e-07 Score=92.25 Aligned_cols=26 Identities=38% Similarity=0.445 Sum_probs=23.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
+++|+|.|++||||||+++.|.+...
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999998763
No 85
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.65 E-value=6.1e-08 Score=94.78 Aligned_cols=153 Identities=12% Similarity=0.096 Sum_probs=75.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC----CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH----KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHG 200 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~----~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g 200 (672)
..+.+|+|+|+|||||||+++.|.+... ...+... +.+...+....+-.....
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~---------------------d~~r~~~~~~~~~~~~~~-- 61 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG---------------------DELREILGHYGYDKQSRI-- 61 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec---------------------HHHHhhcCCCCCCHHHHH--
Confidence 4567999999999999999999987642 1212111 111111100000000000
Q ss_pred cccCcchHHHHH-HHhcCCeEEEEeeHHH--HHHHHHhCC-CcEEEEEeCCCHHHHHHHHHHcC--CCCHHHHHHHHHHH
Q psy11425 201 NFYGTSFFPIVR-EIKSNVDILLEIDFQG--AKQIKKKFP-NAIGIFILPPSLDSLKERLYKRG--QDKYDVISRRILSA 274 (672)
Q Consensus 201 ~~YGt~~~~I~~-~l~~G~~vIldi~~~g--~~~l~~~~~-~~~vIfI~~ps~e~l~~RL~~Rg--~~~~e~i~~rl~~~ 274 (672)
..+ .....+.. ....|..||++..... +........ ..++||+.+| ++++.+|+..+. ....+.+..++..+
T Consensus 62 ~~~-~~~~~l~~~l~~~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~-~e~~~~R~~~~l~~~~~~~~~~~~~~~~ 139 (176)
T PRK05541 62 EMA-LKRAKLAKFLADQGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCD-MEELIRRDQKGLYTKALKGEIKNVVGVD 139 (176)
T ss_pred HHH-HHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCC-HHHHHHhchhhHHHHHHcCcccccccCC
Confidence 000 00111222 2356888888864321 222222222 2456788876 889999975320 01112222233222
Q ss_pred HHHhhhcCCCcEEEEcCC---HHHHHHHHHHHH
Q psy11425 275 NKEISYANKFDYIIINNK---FSKALLQLKAII 304 (672)
Q Consensus 275 ~~e~~~~~~~D~VI~Ndd---le~a~~qL~~iI 304 (672)
.. .|...+|++|.|++ +++.+.++...+
T Consensus 140 ~~--~~~~~Ad~vI~~~~~~~~~~~v~~i~~~l 170 (176)
T PRK05541 140 IP--FDEPKADLVIDNSCRTSLDEKVDLILNKL 170 (176)
T ss_pred Cc--ccCCCCCEEEeCCCCCCHHHHHHHHHHHH
Confidence 21 22234899999984 566666665555
No 86
>PRK12338 hypothetical protein; Provisional
Probab=98.64 E-value=3.2e-07 Score=97.72 Aligned_cols=177 Identities=21% Similarity=0.218 Sum_probs=88.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCccc----ccCCHHHHHHHHHcCCchh-----HH
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREY----YFTNIDNFKKLQKSGKFLE-----WA 196 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY----~fvs~~~F~~~i~~g~fle-----~~ 196 (672)
.+.+|+|+|+|||||||+++.|.+...-.+...+++-|..-.+ ..+.+| |..+.+....+-....+.. +.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~-~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~ 81 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRG-IIGKEYAPALHKSSYNAYTALRDKENFKNNEELICA 81 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcC-CCCcccCchhhcccHHHHhhcCCcccccchHHHHHH
Confidence 4579999999999999999999988632222233333332111 112222 2222222211100000100 00
Q ss_pred hHhccccCcchH----HHHHHHhcCCeEEEEe---eHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCC------
Q psy11425 197 EVHGNFYGTSFF----PIVREIKSNVDILLEI---DFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDK------ 263 (672)
Q Consensus 197 ~~~g~~YGt~~~----~I~~~l~~G~~vIldi---~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~------ 263 (672)
-|. ..+..... .+...+..|..+|+++ .|..+...+......+..|+..++.+..++|...|...+
T Consensus 82 gf~-~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~r~~~~ 160 (319)
T PRK12338 82 GFE-EHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQFEENASIHFFILSADEEVHKERFVKRAMEIKRGGKQ 160 (319)
T ss_pred HHH-HHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhhcccCceEEEEEECCHHHHHHHHHHhhhccCCchhh
Confidence 000 00111122 2334455788899996 443333222111122333444477999999999865321
Q ss_pred ---HHHHHHHHHHHHHHhhhcCCCcEE-EEcCCHHHHHHHHHHHHHhc
Q psy11425 264 ---YDVISRRILSANKEISYANKFDYI-IINNKFSKALLQLKAIINAN 307 (672)
Q Consensus 264 ---~e~i~~rl~~~~~e~~~~~~~D~V-I~Nddle~a~~qL~~iI~~~ 307 (672)
.+.+ +.|..+.. .....++.. |.|.|++++++++.++|...
T Consensus 161 l~~f~~I-r~Iq~~l~--~~A~e~~VpvI~N~did~Tv~~ile~I~e~ 205 (319)
T PRK12338 161 LEYFREN-RIIHDHLV--EQAREHNVPVIKNDDIDCTVKKMLSYIREV 205 (319)
T ss_pred hhChHHH-HHHHHHHH--HhHhhCCCceeCCCcHHHHHHHHHHHHHhh
Confidence 1111 12222222 224456665 66678999999999998755
No 87
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.63 E-value=7.4e-07 Score=90.19 Aligned_cols=162 Identities=19% Similarity=0.167 Sum_probs=90.9
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchH
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFF 208 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~ 208 (672)
.|+|+|||||||||+++.|.+.+...+....+..|..... +. ..-..+...+..|..+.-. ....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~---~~----~~~~~~~~~~~~g~~~p~~--------~~~~ 66 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKA---GT----ELGKEAKSYMDAGELVPDE--------IVIG 66 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhc---cc----hHHHHHHHHHHcCCcCCHH--------HHHH
Confidence 4899999999999999999988643333333332221100 00 0111222333333322211 0111
Q ss_pred HHHHHHhc---CCeEEEEeeHHHHHHHHH------h-CCC-cEEEEEeCCCHHHHHHHHHHcC-----------------
Q psy11425 209 PIVREIKS---NVDILLEIDFQGAKQIKK------K-FPN-AIGIFILPPSLDSLKERLYKRG----------------- 260 (672)
Q Consensus 209 ~I~~~l~~---G~~vIldi~~~g~~~l~~------~-~~~-~~vIfI~~ps~e~l~~RL~~Rg----------------- 260 (672)
.+...+.+ +..+|+|+-|....+... . ... ..+|++.+| .+.+.+|+..|.
T Consensus 67 ~i~~~l~~~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~ 145 (215)
T PRK00279 67 LVKERLAQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVP-DEELVERLSGRRICPACGRTYHVKFNPPK 145 (215)
T ss_pred HHHHHHhccCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHhCCcccCccCCcccccCCCCC
Confidence 22222322 335888986655433221 1 112 357888876 888999998773
Q ss_pred ----------------CCCHHHHHHHHHHHHHHh----hhc-CCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 261 ----------------QDKYDVISRRILSANKEI----SYA-NKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 261 ----------------~~~~e~i~~rl~~~~~e~----~~~-~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
+++++.+.+|+..+.... .|. +..-++-+|. +.++++++|.++|..
T Consensus 146 ~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 146 VEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred CcCcCcCCCCcccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 356788999998765432 332 2223554555 599999999998864
No 88
>PRK14526 adenylate kinase; Provisional
Probab=98.63 E-value=1.5e-06 Score=88.01 Aligned_cols=161 Identities=19% Similarity=0.193 Sum_probs=93.6
Q ss_pred EEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchHH
Q psy11425 130 FIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFP 209 (672)
Q Consensus 130 IvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~~ 209 (672)
|+|+|||||||||+++.|.+.+...+.+....-|..-. .+.. .-..+...+..|.++..... ..-
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~---~~t~----~g~~i~~~~~~g~lvpd~~~--------~~l 67 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENIL---NSTP----LGKEIKQIVENGQLVPDSIT--------IKI 67 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcc---cCCh----hhHHHHHHHHcCccCChHHH--------HHH
Confidence 78999999999999999987753333333333332110 0110 11234444555554432110 111
Q ss_pred HHHHHh---cCCeEEEEeeHHHHHHH---HHhCCCcEEEEEeCCCHHHHHHHHHHc------------------------
Q psy11425 210 IVREIK---SNVDILLEIDFQGAKQI---KKKFPNAIGIFILPPSLDSLKERLYKR------------------------ 259 (672)
Q Consensus 210 I~~~l~---~G~~vIldi~~~g~~~l---~~~~~~~~vIfI~~ps~e~l~~RL~~R------------------------ 259 (672)
+...+. .....|+|+-|....+. ....+...+|++..| .+++.+|+..|
T Consensus 68 v~~~l~~~~~~~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~ 146 (211)
T PRK14526 68 VEDKINTIKNNDNFILDGFPRNINQAKALDKFLPNIKIINFLID-EELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICD 146 (211)
T ss_pred HHHHHhcccccCcEEEECCCCCHHHHHHHHHhcCCCEEEEEECC-HHHHHHHHHCCCcccccCCccccccCCCCccCcCC
Confidence 222232 23457889877555443 333444556667765 89999998865
Q ss_pred ---------CCCCHHHHHHHHHHHHHHh----hhc-CCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 260 ---------GQDKYDVISRRILSANKEI----SYA-NKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 260 ---------g~~~~e~i~~rl~~~~~e~----~~~-~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
.+++++.+.+|+..+..+. .|. ...-++.+|. ++++++++|..+|..
T Consensus 147 ~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~ 209 (211)
T PRK14526 147 VCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK 209 (211)
T ss_pred CCCCeeeccCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 3456789999998875442 333 2223444444 599999999998865
No 89
>PRK14532 adenylate kinase; Provisional
Probab=98.61 E-value=6.9e-07 Score=88.23 Aligned_cols=161 Identities=18% Similarity=0.202 Sum_probs=89.3
Q ss_pred EEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchHH
Q psy11425 130 FIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFP 209 (672)
Q Consensus 130 IvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~~ 209 (672)
|+|+|||||||||+++.|.+.+...+.+..+..|..-. .|.. .-..+...+..|+.+.-... ...
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~---~~~~----~~~~~~~~~~~g~~~~~~~~--------~~~ 67 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIA---SGSE----LGQRVKGIMDRGELVSDEIV--------IAL 67 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHH---cCCH----HHHHHHHHHHCCCccCHHHH--------HHH
Confidence 88999999999999999998864334444344443210 0110 01122233333433221100 111
Q ss_pred HHHH---HhcCCeEEEEeeHHHHHHHH-------HhCCCc-EEEEEeCCCHHHHHHHHHHcC------CCCHHHHHHHHH
Q psy11425 210 IVRE---IKSNVDILLEIDFQGAKQIK-------KKFPNA-IGIFILPPSLDSLKERLYKRG------QDKYDVISRRIL 272 (672)
Q Consensus 210 I~~~---l~~G~~vIldi~~~g~~~l~-------~~~~~~-~vIfI~~ps~e~l~~RL~~Rg------~~~~e~i~~rl~ 272 (672)
+... +..+..+|+|+.|....+.. .....| .+|++..| .+++.+|+..|. .++.+.+.+|+.
T Consensus 68 ~~~~~~~~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~-~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~ 146 (188)
T PRK14532 68 IEERLPEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVD-DEALIERIVKRFEEQGRPDDNPEVFVTRLD 146 (188)
T ss_pred HHHHHhCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCcCcCCCCCCCHHHHHHHHH
Confidence 1111 22356688898664433222 222333 56888876 889999998773 234566778887
Q ss_pred HHHHHh----hhc-CCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 273 SANKEI----SYA-NKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 273 ~~~~e~----~~~-~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
....+. .+. +..-++.+|. ++++++.+|.+.|+.
T Consensus 147 ~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~~ 187 (188)
T PRK14532 147 AYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALEG 187 (188)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 664432 222 2222444443 699999999988853
No 90
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.58 E-value=2.2e-07 Score=95.12 Aligned_cols=163 Identities=17% Similarity=0.173 Sum_probs=85.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCc-e-----eec--cccc---ccCCCCCCCC-cccccCCHHHHHHH---HHc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKI-K-----LSI--STTT---RPMRPGEKNG-REYYFTNIDNFKKL---QKS 189 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~-~-----~~v--~~TT---R~~r~~E~~G-~dY~fvs~~~F~~~---i~~ 189 (672)
..+.+|+|+||+|||||||++.|....+.. + ... .+.. +... +-... ..+...+-+.|... +..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~-g~~~~~~~~~~~d~~~~~~~l~~l~~ 109 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAH-GLRPRKGAPETFDVAGLAALLRRLRA 109 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhc-ccccccCCCCCCCHHHHHHHHHHHHc
Confidence 457899999999999999999998765311 1 111 1111 0000 00000 01122233333322 333
Q ss_pred CC-chhHHhHhccccCcchHHHHHHHhcCCeEEEEeeHHH-----HHHHHHhCCCcEEEEEeCCCHHHHHHHHHHc---C
Q psy11425 190 GK-FLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQG-----AKQIKKKFPNAIGIFILPPSLDSLKERLYKR---G 260 (672)
Q Consensus 190 g~-fle~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g-----~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~R---g 260 (672)
+. .+.+..|...........+ .......++|+++.+.. +..+.. ....+|||.+| .+++.+|+..| .
T Consensus 110 ~~~~i~~P~yD~~~~~~~~~~~-~~~~~~~ivIvEG~~~l~~~~~~~~l~~--~~D~vi~v~~~-~~~~~~R~~~R~~~~ 185 (229)
T PRK09270 110 GDDEVYWPVFDRSLEDPVADAI-VVPPTARLVIVEGNYLLLDEEPWRRLAG--LFDFTIFLDAP-AEVLRERLVARKLAG 185 (229)
T ss_pred CCCceecccCCcccCCCCCCce-EecCCCCEEEEcCcceeeccccHHHHHh--hCCEEEEEECC-HHHHHHHHHHHHHhc
Confidence 33 3333322221111000000 01112456667764332 223332 23467999987 88999999988 3
Q ss_pred CCCHHHHHHHHHH-HHH----HhhhcCCCcEEEEcCC
Q psy11425 261 QDKYDVISRRILS-ANK----EISYANKFDYIIINNK 292 (672)
Q Consensus 261 ~~~~e~i~~rl~~-~~~----e~~~~~~~D~VI~Ndd 292 (672)
..+++++..++.. +.. .....+.+|+||.|+.
T Consensus 186 g~s~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~n~~ 222 (229)
T PRK09270 186 GLSPEAAEAFVLRNDGPNARLVLETSRPADLVLEMTA 222 (229)
T ss_pred CCCHHHHHHHHHhcChHHHHHHHhcCCCCCEEEEecC
Confidence 4567888888864 333 2356778999999985
No 91
>PRK13973 thymidylate kinase; Provisional
Probab=98.58 E-value=9e-07 Score=89.61 Aligned_cols=169 Identities=15% Similarity=0.120 Sum_probs=86.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcC---Cc---hhHHhHh
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSG---KF---LEWAEVH 199 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g---~f---le~~~~~ 199 (672)
.+++|+|.|+.||||||+++.|.+....-++.+ .+|+.|.... . -+...+.+..+ .+ .+..-+.
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~-~~~~~p~~~~-~--------g~~ir~~l~~~~~~~~~~~~~~ll~~ 71 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDV-LVTREPGGSP-G--------AEAIRHVLLSGAAELYGPRMEALLFA 71 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeE-EEEECCCCCc-h--------HHHHHHHHcCCCccCCCHHHHHHHHH
Confidence 378999999999999999999988863222333 3343332111 0 11111111110 00 1100011
Q ss_pred ccccCcchHHHHHHHhcCCeEEEEee------HHH---------HHHHHHh---CCC-cEEEEEeCCCHHHHHHHHHHcC
Q psy11425 200 GNFYGTSFFPIVREIKSNVDILLEID------FQG---------AKQIKKK---FPN-AIGIFILPPSLDSLKERLYKRG 260 (672)
Q Consensus 200 g~~YGt~~~~I~~~l~~G~~vIldi~------~~g---------~~~l~~~---~~~-~~vIfI~~ps~e~l~~RL~~Rg 260 (672)
...+......|...+++|.+||+|-- +++ +..+... .+. ..+||++.| +++..+|+..|+
T Consensus 72 a~r~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~-~e~~~~Rl~~R~ 150 (213)
T PRK13973 72 AARDDHVEEVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIP-AEVGLERAAKRR 150 (213)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHHHhcc
Confidence 11111112345667788998888831 122 1222221 122 346777776 999999999886
Q ss_pred CCC----H-----HHHHHHHHHHHHHhhhcCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 261 QDK----Y-----DVISRRILSANKEISYANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 261 ~~~----~-----e~i~~rl~~~~~e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
..+ . +..+++.+.+.....+. ...++++|. ++++...+|..+|..
T Consensus 151 ~~~~~~~~e~~~~~~~~~~~~~y~~l~~~~-~~~~~~Ida~~~~e~V~~~I~~~i~~ 206 (213)
T PRK13973 151 GSDTPDRFEKEDLAFHEKRREAFLQIAAQE-PERCVVIDATASPEAVAAEIWAAVDQ 206 (213)
T ss_pred CCCccCchhhchHHHHHHHHHHHHHHHHhC-CCcEEEEcCCCCHHHHHHHHHHHHHH
Confidence 421 1 11222222222211111 112444444 599999999998864
No 92
>PRK13808 adenylate kinase; Provisional
Probab=98.58 E-value=7.7e-07 Score=95.42 Aligned_cols=162 Identities=18% Similarity=0.200 Sum_probs=91.3
Q ss_pred EEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchHH
Q psy11425 130 FIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFP 209 (672)
Q Consensus 130 IvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~~ 209 (672)
|+|+|||||||||++..|.+.+...++++...-|..-. .+.. .-..+...+..|.++...... .-
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~---~~s~----~g~~~~~~~~~G~lVPdeiv~--------~l 67 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVA---AGTP----VGLKAKDIMASGGLVPDEVVV--------GI 67 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhh---cCCh----hhHHHHHHHHcCCCCCHHHHH--------HH
Confidence 78899999999999999999864333343333321100 0000 111233333444443321111 01
Q ss_pred HHHHHh---cCCeEEEEeeHHHHHHHHHh-------CCC-cEEEEEeCCCHHHHHHHHHHc------------CCCCHHH
Q psy11425 210 IVREIK---SNVDILLEIDFQGAKQIKKK-------FPN-AIGIFILPPSLDSLKERLYKR------------GQDKYDV 266 (672)
Q Consensus 210 I~~~l~---~G~~vIldi~~~g~~~l~~~-------~~~-~~vIfI~~ps~e~l~~RL~~R------------g~~~~e~ 266 (672)
+...+. ...-.|+|+.|..+.+.... ... .++||++.| ++++.+|+..| .+++.+.
T Consensus 68 i~e~l~~~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp-~evll~Rl~~R~~~~~~rg~~~R~DD~~E~ 146 (333)
T PRK13808 68 ISDRIEQPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVN-EGALLARVETRVAEMRARGEEVRADDTPEV 146 (333)
T ss_pred HHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECC-HHHHHHHHHcCcccccccCCccCCCCCHHH
Confidence 111121 12347889877555444321 112 345777765 89999999876 2345788
Q ss_pred HHHHHHHHHHH----hhhcCCC-cEEEEcC--CHHHHHHHHHHHHHhc
Q psy11425 267 ISRRILSANKE----ISYANKF-DYIIINN--KFSKALLQLKAIINAN 307 (672)
Q Consensus 267 i~~rl~~~~~e----~~~~~~~-D~VI~Nd--dle~a~~qL~~iI~~~ 307 (672)
+.+|+..+... +.|.... -++.+|. ++++++.+|..+|...
T Consensus 147 i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~ 194 (333)
T PRK13808 147 LAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAV 194 (333)
T ss_pred HHHHHHHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHH
Confidence 88898765544 3343322 3455554 5899999999999764
No 93
>PRK13947 shikimate kinase; Provisional
Probab=98.57 E-value=4.8e-07 Score=87.76 Aligned_cols=152 Identities=13% Similarity=0.148 Sum_probs=75.9
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchH
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFF 208 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~ 208 (672)
-|+|+|+|||||||+++.|.+.. ++.+.......... .|... .+-|... |+ ..|... ...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l-g~~~id~d~~~~~~----~g~~~----~~~~~~~---ge-~~~~~~-------e~~ 62 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL-SFGFIDTDKEIEKM----TGMTV----AEIFEKD---GE-VRFRSE-------EKL 62 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh-CCCEEECchhhhhh----cCCcH----HHHHHHh---Ch-HHHHHH-------HHH
Confidence 48999999999999999998875 23232222221111 11110 1112110 10 000000 011
Q ss_pred HHHHHHhcCCeEEEE-----eeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCC---CHHHHHHHHHHHHHH-hh
Q psy11425 209 PIVREIKSNVDILLE-----IDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQD---KYDVISRRILSANKE-IS 279 (672)
Q Consensus 209 ~I~~~l~~G~~vIld-----i~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~---~~e~i~~rl~~~~~e-~~ 279 (672)
.++.....+..+|-. +++..+..+++. .++||+.++ ++.+.+|+..|+.. .......++.....+ ..
T Consensus 63 ~~~~l~~~~~~vi~~g~g~vl~~~~~~~l~~~---~~vv~L~~~-~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~~ 138 (171)
T PRK13947 63 LVKKLARLKNLVIATGGGVVLNPENVVQLRKN---GVVICLKAR-PEVILRRVGKKKSRPLLMVGDPEERIKELLKEREP 138 (171)
T ss_pred HHHHHhhcCCeEEECCCCCcCCHHHHHHHHhC---CEEEEEECC-HHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHH
Confidence 122222222222211 233444444442 357999876 99999999876431 111222333222111 12
Q ss_pred hcCCCcEEEEcC--CHHHHHHHHHH-HH
Q psy11425 280 YANKFDYIIINN--KFSKALLQLKA-II 304 (672)
Q Consensus 280 ~~~~~D~VI~Nd--dle~a~~qL~~-iI 304 (672)
+...+|++|.++ +++++.++|.. ++
T Consensus 139 ~y~~ad~~Idt~~~~~~~i~~~I~~~~~ 166 (171)
T PRK13947 139 FYDFADYTIDTGDMTIDEVAEEIIKAYL 166 (171)
T ss_pred HHHhcCEEEECCCCCHHHHHHHHHHHHH
Confidence 334689988865 58999999988 44
No 94
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.55 E-value=5e-07 Score=93.50 Aligned_cols=155 Identities=20% Similarity=0.282 Sum_probs=83.4
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCch-hHHhHhccccCcch
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFL-EWAEVHGNFYGTSF 207 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fl-e~~~~~g~~YGt~~ 207 (672)
+|+|+|+|||||||+++.|.+.+..- |.+++.++.+.+...+.. +- .+..+. .....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~-----------------~~~v~~i~~D~lr~~~~~--~~~~~e~~~---~~~~~ 58 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK-----------------NIDVIILGTDLIRESFPV--WKEKYEEFI---RDSTL 58 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc-----------------CCceEEEccHHHHHHhHH--hhHHhHHHH---HHHHH
Confidence 48999999999999999998764210 011111111111111100 00 000000 11112
Q ss_pred HHHHHHHhcCCeEEEEeeH--HHH-HHH----HHhCCCcEEEEEeCCCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHH-h
Q psy11425 208 FPIVREIKSNVDILLEIDF--QGA-KQI----KKKFPNAIGIFILPPSLDSLKERLYKRGQDK-YDVISRRILSANKE-I 278 (672)
Q Consensus 208 ~~I~~~l~~G~~vIldi~~--~g~-~~l----~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~-~e~i~~rl~~~~~e-~ 278 (672)
..+...+..|..||+|... .+. ..+ +.......+||+.+| .+.+.+|...|+... ++.+.......... .
T Consensus 59 ~~i~~~l~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p-~e~~~~Rn~~R~~~~~~~~i~~l~~r~e~p~~ 137 (249)
T TIGR03574 59 YLIKTALKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAP-LDTLLRRNIERGEKIPNEVIKDMYEKFDEPGT 137 (249)
T ss_pred HHHHHHHhCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCC-HHHHHHHHHhCCCCCCHHHHHHHHHhhCCCCC
Confidence 3456677788888888643 111 112 222334566788766 899999999887643 34444433332211 1
Q ss_pred h-hcCCCcEEEEcC---CHHHHHHHHHHHHHh
Q psy11425 279 S-YANKFDYIIINN---KFSKALLQLKAIINA 306 (672)
Q Consensus 279 ~-~~~~~D~VI~Nd---dle~a~~qL~~iI~~ 306 (672)
. ++...+++|..+ +.++.+++|...+..
T Consensus 138 ~~~wd~~~~~vd~~~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 138 KYSWDLPDLTIDTTKKIDYNEILEEILEISEN 169 (249)
T ss_pred CCCccCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence 2 234578888765 357888888777643
No 95
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.53 E-value=1.5e-06 Score=93.02 Aligned_cols=155 Identities=13% Similarity=0.154 Sum_probs=83.1
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC-CCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccc
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD-HKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNF 202 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~-~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~ 202 (672)
+.++..|+|+|++||||||+++.|.+.. ..|........ . ..|. +..++.... ++. .+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~--~----~~G~-----~i~ei~~~~--------G~~--~f 188 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIE--R----EAGL-----SVSEIFALY--------GQE--GY 188 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHH--H----HhCC-----CHHHHHHHH--------CHH--HH
Confidence 3456799999999999999999998874 22221111111 0 0111 111111110 000 00
Q ss_pred cCcchHHHHHHHhcCCeEEEEe------eHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCC----C----HHHHH
Q psy11425 203 YGTSFFPIVREIKSNVDILLEI------DFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQD----K----YDVIS 268 (672)
Q Consensus 203 YGt~~~~I~~~l~~G~~vIldi------~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~----~----~e~i~ 268 (672)
.-.....+...+.....+|+.. ++..+..+.. +.++|||.+| ++.+.+|+..|+.. + .+.+.
T Consensus 189 r~~e~~~l~~ll~~~~~~VI~~Ggg~v~~~~~~~~l~~---~~~~V~L~a~-~e~~~~Rl~~r~~~rp~~~~~~~~e~i~ 264 (309)
T PRK08154 189 RRLERRALERLIAEHEEMVLATGGGIVSEPATFDLLLS---HCYTVWLKAS-PEEHMARVRAQGDLRPMADNREAMEDLR 264 (309)
T ss_pred HHHHHHHHHHHHhhCCCEEEECCCchhCCHHHHHHHHh---CCEEEEEECC-HHHHHHHHhcCCCCCCCCCCCChHHHHH
Confidence 0111223334444333333332 1122223322 4568999976 99999999987532 1 13443
Q ss_pred HHHHHHHHHhhhcCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 269 RRILSANKEISYANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 269 ~rl~~~~~e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
...+... .+.+.+|++|.|+ +++++.++|..++..
T Consensus 265 ~~~~~R~---~~y~~ad~~I~t~~~s~ee~~~~I~~~l~~ 301 (309)
T PRK08154 265 RILASRE---PLYARADAVVDTSGLTVAQSLARLRELVRP 301 (309)
T ss_pred HHHHHHH---HHHHhCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 3332222 3334699999988 489999999888853
No 96
>PLN02674 adenylate kinase
Probab=98.52 E-value=2.6e-06 Score=87.90 Aligned_cols=162 Identities=16% Similarity=0.081 Sum_probs=95.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTS 206 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~ 206 (672)
.+.|+|+|||||||+|+++.|.+.+.-.+.+....-|..-. .+.. .-..+...+..|.++...-.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~---~~s~----~g~~i~~~~~~G~lvpd~iv-------- 95 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVA---AKTP----LGIKAKEAMDKGELVSDDLV-------- 95 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHh---ccCh----hhHHHHHHHHcCCccCHHHH--------
Confidence 35688999999999999999999874334444333332100 0110 11234444556666543211
Q ss_pred hHHHHHHHhc---CCeEEEEeeHHHHHHHHHh-------CC-CcEEEEEeCCCHHHHHHHHHHc----------------
Q psy11425 207 FFPIVREIKS---NVDILLEIDFQGAKQIKKK-------FP-NAIGIFILPPSLDSLKERLYKR---------------- 259 (672)
Q Consensus 207 ~~~I~~~l~~---G~~vIldi~~~g~~~l~~~-------~~-~~~vIfI~~ps~e~l~~RL~~R---------------- 259 (672)
...+...+.. +...|+|+-|....+.... .. -..+|++..| .+++.+|+..|
T Consensus 96 ~~lv~~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~-~~~l~~Rl~gR~~~~~~g~~yn~~~~p 174 (244)
T PLN02674 96 VGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAID-DAILEERITGRWIHPSSGRTYHTKFAP 174 (244)
T ss_pred HHHHHHHHhCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhccccccccCCccccccCC
Confidence 1122222322 3458899877665444311 11 2346788875 88999998865
Q ss_pred -----------------CCCCHHHHHHHHHHHHHHh----hhc-CCCcEEEEcC--CHHHHHHHHHHHH
Q psy11425 260 -----------------GQDKYDVISRRILSANKEI----SYA-NKFDYIIINN--KFSKALLQLKAII 304 (672)
Q Consensus 260 -----------------g~~~~e~i~~rl~~~~~e~----~~~-~~~D~VI~Nd--dle~a~~qL~~iI 304 (672)
.+++++.+.+|+..+..+. .|. ..--++.+|. ++++.+++|..++
T Consensus 175 p~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 175 PKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred CcccCcccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 3456788999998876442 333 2223444444 5999999998876
No 97
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.52 E-value=2.9e-06 Score=83.03 Aligned_cols=150 Identities=15% Similarity=0.197 Sum_probs=79.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccc--c--CCHHHHHHHHHcCCchhHHhHhccc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYY--F--TNIDNFKKLQKSGKFLEWAEVHGNF 202 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~--f--vs~~~F~~~i~~g~fle~~~~~g~~ 202 (672)
.+.|+|+|++||||||+++.|.+.. ++.+...+..+..+. |.+.. | .....|... +
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l-~~~~vd~D~~i~~~~----g~~i~~~~~~~g~~~fr~~-------e-------- 63 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL-NMEFYDSDQEIEKRT----GADIGWVFDVEGEEGFRDR-------E-------- 63 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc-CCcEEECCchHHHHh----CcCHhHHHHHhCHHHHHHH-------H--------
Confidence 4579999999999999999998874 333333333222221 11110 0 011111111 0
Q ss_pred cCcchHHHHHHHhcCCeEEEEe------eHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCC------CHHHHHHH
Q psy11425 203 YGTSFFPIVREIKSNVDILLEI------DFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQD------KYDVISRR 270 (672)
Q Consensus 203 YGt~~~~I~~~l~~G~~vIldi------~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~------~~e~i~~r 270 (672)
...+......+. +++.. ++.....++. ...+||+..| .+.+.+|+..+..- .....-..
T Consensus 64 ----~~~l~~l~~~~~-~vi~~ggg~v~~~~~~~~l~~---~~~vv~L~~~-~e~~~~Ri~~~~~rP~~~~~~~~~~~~~ 134 (172)
T PRK05057 64 ----EKVINELTEKQG-IVLATGGGSVKSRETRNRLSA---RGVVVYLETT-IEKQLARTQRDKKRPLLQVDDPREVLEA 134 (172)
T ss_pred ----HHHHHHHHhCCC-EEEEcCCchhCCHHHHHHHHh---CCEEEEEeCC-HHHHHHHHhCCCCCCCCCCCCHHHHHHH
Confidence 112222222333 33322 2222233332 2367999977 99999999754221 11111112
Q ss_pred HHHHHHHhhhcCCCcEEEEcCC--HHHHHHHHHHHHHh
Q psy11425 271 ILSANKEISYANKFDYIIINNK--FSKALLQLKAIINA 306 (672)
Q Consensus 271 l~~~~~e~~~~~~~D~VI~Ndd--le~a~~qL~~iI~~ 306 (672)
+.. .+.-.|...+|++|.+++ .++...+|.+.++.
T Consensus 135 l~~-~R~~~Y~~~Ad~~idt~~~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 135 LAN-ERNPLYEEIADVTIRTDDQSAKVVANQIIHMLES 171 (172)
T ss_pred HHH-HHHHHHHhhCCEEEECCCCCHHHHHHHHHHHHhh
Confidence 211 223346677999998774 88999998887753
No 98
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.51 E-value=6.6e-07 Score=85.68 Aligned_cols=164 Identities=16% Similarity=0.204 Sum_probs=86.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTS 206 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~ 206 (672)
+++++++|-||+||||+.+.+.+.... +..+.+-+-.- |.......-.+++++..+....+-.- .
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~-~~ivNyG~~Ml---e~A~k~glve~rD~~Rklp~e~Q~~l-----------q 68 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVK-HKIVNYGDLML---EIAKKKGLVEHRDEMRKLPLENQREL-----------Q 68 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhh-ceeeeHhHHHH---HHHHHhCCcccHHHHhcCCHHHHHHH-----------H
Confidence 489999999999999999988776411 11111111000 00000011123333332211111100 1
Q ss_pred hHHHHHHHhcCCeEEEEe-----eHHHH----H--HHHHhCCCcEEEEEeCCCHHHHHHHHHH----cCCCCHHHHHHHH
Q psy11425 207 FFPIVREIKSNVDILLEI-----DFQGA----K--QIKKKFPNAIGIFILPPSLDSLKERLYK----RGQDKYDVISRRI 271 (672)
Q Consensus 207 ~~~I~~~l~~G~~vIldi-----~~~g~----~--~l~~~~~~~~vIfI~~ps~e~l~~RL~~----Rg~~~~e~i~~rl 271 (672)
..+++++.+.+..+|+|. +|.|+ . -+....++.+ |.+.+++.+++.+|++. |..++.+++.+.+
T Consensus 69 ~~Aa~rI~~~~~~iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~i-vllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHq 147 (189)
T COG2019 69 AEAAKRIAEMALEIIVDTHATIKTPAGYLPGLPSWVLEELNPDVI-VLLEADPEEILERRLRDSRRDRDVESVEEIREHQ 147 (189)
T ss_pred HHHHHHHHHhhhceEEeccceecCCCccCCCCcHHHHHhcCCCEE-EEEeCCHHHHHHHHhcccccccccccHHHHHHHH
Confidence 223444444455477774 33333 2 3445455554 55555657777777773 3445667777766
Q ss_pred HHHHHH-hhh---cCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 272 LSANKE-ISY---ANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 272 ~~~~~e-~~~---~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
+..... +.| ....-.||.|+ +++++..++..+|..
T Consensus 148 e~nR~aA~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~~ 188 (189)
T COG2019 148 EMNRAAAMAYAILLGATVKIVENHEGDPEEAAEEIVELLDR 188 (189)
T ss_pred HHHHHHHHHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 554321 222 24456778887 499999999988864
No 99
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.50 E-value=2.5e-06 Score=90.51 Aligned_cols=127 Identities=20% Similarity=0.153 Sum_probs=68.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGT 205 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt 205 (672)
|+++|+++|+|||||||+++.|.+.++++.+.....-|....+...-..|.|..... ...+..
T Consensus 1 m~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 63 (300)
T PHA02530 1 MMKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKE-----------------DLVTKA 63 (300)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHH-----------------HHHHHH
Confidence 568999999999999999999998864333322222221111100000011110000 000111
Q ss_pred chHHHHHHHhcCCeEEEEeeHH---H---HHHH-HHhCCCcEEEEEeCCCHHHHHHHHHHcCC--CCHHHHHHH
Q psy11425 206 SFFPIVREIKSNVDILLEIDFQ---G---AKQI-KKKFPNAIGIFILPPSLDSLKERLYKRGQ--DKYDVISRR 270 (672)
Q Consensus 206 ~~~~I~~~l~~G~~vIldi~~~---g---~~~l-~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~--~~~e~i~~r 270 (672)
....+...+..|..+|++..+. . +..+ +.......+|++.+ +.+++.+|+..|+. .+.+.+..+
T Consensus 64 ~~~~~~~~l~~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~-~~e~~~~R~~~R~~~~~~~~~i~~~ 136 (300)
T PHA02530 64 QEAAALAALKSGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDV-PVEELVKRNRKRGERAVPEDVLRSM 136 (300)
T ss_pred HHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCC-CHHHHHHHHHccCcCCCCHHHHHHH
Confidence 1233445567788889985432 1 2222 22233455677776 59999999999954 345555533
No 100
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.50 E-value=3.2e-07 Score=89.58 Aligned_cols=157 Identities=14% Similarity=0.139 Sum_probs=77.8
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC--C--ceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH--K--IKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHG 200 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~--~--~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g 200 (672)
+.+.+|+|+|+|||||||+++.|..... + +.+.....-|. .-..+..|...++...
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~---~~~~~~~~~~~~r~~~----------------- 61 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT---NLSKGLGFSKEDRDTN----------------- 61 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH---HHhcCCCCChhhHHHH-----------------
Confidence 3567999999999999999999987642 1 11111111010 0000111111111100
Q ss_pred cccCcchHHHHHHHhcCCeEEEEeeH---HHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCC---HHHHHHHHHHH
Q psy11425 201 NFYGTSFFPIVREIKSNVDILLEIDF---QGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDK---YDVISRRILSA 274 (672)
Q Consensus 201 ~~YGt~~~~I~~~l~~G~~vIldi~~---~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~---~e~i~~rl~~~ 274 (672)
+.............|.+|+++... .....++.......+||+.+| .+++.+|. .|+-.. .+.+...+ ..
T Consensus 62 --~~~~~~~a~~~~~~g~~vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~-~e~~~~R~-~~~l~~~~~~~~i~~~~-~~ 136 (175)
T PRK00889 62 --IRRIGFVANLLTRHGVIVLVSAISPYRETREEVRANIGNFLEVFVDAP-LEVCEQRD-VKGLYAKARAGEIKHFT-GI 136 (175)
T ss_pred --HHHHHHHHHHHHhCCCEEEEecCCCCHHHHHHHHhhcCCeEEEEEcCC-HHHHHHhC-cccHHHHHHcCCCCCCc-cc
Confidence 000000111223457777776531 223344444445667899887 88888884 111000 00111111 01
Q ss_pred HHHhhhcCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 275 NKEISYANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 275 ~~e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
...+.....+|++|..+ +++++.+++...|..
T Consensus 137 ~~~~~~p~~ad~~i~~~~~~~~~~~~~i~~~l~~ 170 (175)
T PRK00889 137 DDPYEPPLNPEVECRTDLESLEESVDKVLQKLEE 170 (175)
T ss_pred CCCCCCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 11111124578888766 499999999998865
No 101
>PRK13975 thymidylate kinase; Provisional
Probab=98.50 E-value=5.4e-06 Score=82.21 Aligned_cols=27 Identities=22% Similarity=0.371 Sum_probs=24.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
|+++|+|.|++||||||+++.|.+...
T Consensus 1 m~~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 1 MNKFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 468999999999999999999999864
No 102
>PLN02348 phosphoribulokinase
Probab=98.49 E-value=3.1e-07 Score=99.90 Aligned_cols=157 Identities=19% Similarity=0.124 Sum_probs=81.9
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCc--------------------eeecccc---cccCCCCCCCCcc------c
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKI--------------------KLSISTT---TRPMRPGEKNGRE------Y 175 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~--------------------~~~v~~T---TR~~r~~E~~G~d------Y 175 (672)
..+.+|+|+|+|||||||+++.|.+.+... .++.... .|..|. ..|.. +
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~--~~g~t~ldP~a~ 124 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRK--EKGVTALDPRAN 124 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHh--hcCCccCCcccc
Confidence 346799999999999999999998865210 1111111 111111 01111 1
Q ss_pred ccCCHHHHHHHHHcCCchhHHhHhccccCcchHHHHHHHhcCCeEEEEeeHHHHHH-HHHhCCCcEEEEEeCCCHHHHH-
Q psy11425 176 YFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQ-IKKKFPNAIGIFILPPSLDSLK- 253 (672)
Q Consensus 176 ~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~-l~~~~~~~~vIfI~~ps~e~l~- 253 (672)
.|..-.++-..++.|+-+++..|+.. -|..... ..+...+++|+++.+..... ++. ...+.|||+++ .++..
T Consensus 125 dfDll~~~L~~Lk~G~~I~~PiYDh~-tg~~~~~--e~I~p~~VVIVEGlh~L~~e~lr~--l~D~~IyVd~~-~dvrl~ 198 (395)
T PLN02348 125 NFDLMYEQVKALKEGKAVEKPIYNHV-TGLLDPP--ELIEPPKILVIEGLHPMYDERVRD--LLDFSIYLDIS-DDVKFA 198 (395)
T ss_pred cHHHHHHHHHHHHCCCcEEeeccccC-CCCcCCc--EEcCCCcEEEEechhhccCccccc--cCcEEEEEECC-HHHHHH
Confidence 11111122233455655555434322 2322211 23556778888875544322 222 23467999987 66653
Q ss_pred ---HHHH-HcCCCCHHHHHHHHHHHHHH-----hhhcCCCcEEEEc
Q psy11425 254 ---ERLY-KRGQDKYDVISRRILSANKE-----ISYANKFDYIIIN 290 (672)
Q Consensus 254 ---~RL~-~Rg~~~~e~i~~rl~~~~~e-----~~~~~~~D~VI~N 290 (672)
+|.. .|| .+.+++..++..+... ..+...+|+||.=
T Consensus 199 RRI~RD~~eRG-~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v 243 (395)
T PLN02348 199 WKIQRDMAERG-HSLESIKASIEARKPDFDAYIDPQKQYADVVIEV 243 (395)
T ss_pred HHHHhhHhhcC-CCHHHHHHHHHhcCcchhhhcccccccCCEEEEe
Confidence 3333 244 4667777777665433 2345689998853
No 103
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.48 E-value=8.4e-07 Score=93.28 Aligned_cols=157 Identities=17% Similarity=0.128 Sum_probs=81.2
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCcee---ecccccccCCCC-CCCCcccccCCHHHHH------HHHHcCCchhHHhH
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKL---SISTTTRPMRPG-EKNGREYYFTNIDNFK------KLQKSGKFLEWAEV 198 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~---~v~~TTR~~r~~-E~~G~dY~fvs~~~F~------~~i~~g~fle~~~~ 198 (672)
+|+|+|+|||||||+++.|....+.... ......+..+.. ...|.....-....|. ..++.++-+.+..|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 5899999999999999999877532111 111111100000 0011111111111122 22344444444333
Q ss_pred hccccCcchHHHHHHHhcCCeEEEEeeHHHHH-HHHHhCCCcEEEEEeCCCHHHH----HHHHHHcCCCCHHHHHHHHHH
Q psy11425 199 HGNFYGTSFFPIVREIKSNVDILLEIDFQGAK-QIKKKFPNAIGIFILPPSLDSL----KERLYKRGQDKYDVISRRILS 273 (672)
Q Consensus 199 ~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~-~l~~~~~~~~vIfI~~ps~e~l----~~RL~~Rg~~~~e~i~~rl~~ 273 (672)
+ +..|..... ..+...+++|+++-...+. .++. .....|||.++ .+++ .+|...|...+.+++.+++++
T Consensus 81 ~-~~~~~~~~~--~~i~~~~ivIvEG~~~l~~~~l~~--~~D~~I~vd~~-~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~ 154 (273)
T cd02026 81 N-HVTGLIDPP--ELIKPTKIVVIEGLHPLYDERVRE--LLDFSVYLDIS-DEVKFAWKIQRDMAERGHSLEDVLASIEA 154 (273)
T ss_pred c-ccCCCcCCc--EEcCCCCEEEEeeehhhCchhhhh--hccEEEEEECC-hhHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 2 222321111 1234457788887664332 2322 23456999987 6666 445555545567777788866
Q ss_pred HHHHhh-----hcCCCcEEEEcC
Q psy11425 274 ANKEIS-----YANKFDYIIINN 291 (672)
Q Consensus 274 ~~~e~~-----~~~~~D~VI~Nd 291 (672)
+..... +...+|+||.+.
T Consensus 155 r~~~~~~~I~P~~~~ADvVI~~~ 177 (273)
T cd02026 155 RKPDFEAYIDPQKQYADVVIQVL 177 (273)
T ss_pred hchhHHHHhccccccCcEEEEcc
Confidence 544432 367899999776
No 104
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.48 E-value=6.6e-07 Score=87.70 Aligned_cols=159 Identities=17% Similarity=0.219 Sum_probs=83.0
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCC--Cceeecccccc---cCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhcc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDH--KIKLSISTTTR---PMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGN 201 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~--~~~~~v~~TTR---~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~ 201 (672)
+++|+|.|+|.||||||++.|.+.++ -+++.+..... +.+.....|..+--.-+ +.+.....
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~-------------~~~~~~~~ 67 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRP-------------DGGPLFRR 67 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSE-------------EE-HHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCC-------------chhHHHHH
Confidence 47999999999999999999999875 24444432222 11111111111100000 00111112
Q ss_pred ccCcchHHHHHHHhcCCeEEEEe---eHHH-HHHHHHh--CCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy11425 202 FYGTSFFPIVREIKSNVDILLEI---DFQG-AKQIKKK--FPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSAN 275 (672)
Q Consensus 202 ~YGt~~~~I~~~l~~G~~vIldi---~~~g-~~~l~~~--~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~ 275 (672)
.|......|....+.|.+||+|- ++.. ...+++. ..+..+|-|.+| .+++.+|-..|++-..-. ...+
T Consensus 68 ~~~~~~~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cp-leil~~RE~~RgDR~~G~-----a~~q 141 (174)
T PF07931_consen 68 LYAAMHAAIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCP-LEILERRERARGDRPIGL-----AAWQ 141 (174)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE---HHHHHHHHHHHTSSSTTH-----HHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECC-HHHHHHHHHhcCCcchHH-----HHHH
Confidence 22233457777888999999993 2222 2334332 234566777776 899999999998743321 1111
Q ss_pred HH-hhhcCCCcEEEEcC--CHHHHHHHHHHHH
Q psy11425 276 KE-ISYANKFDYIIINN--KFSKALLQLKAII 304 (672)
Q Consensus 276 ~e-~~~~~~~D~VI~Nd--dle~a~~qL~~iI 304 (672)
.+ ......||+.|... +.+++.++|.+.+
T Consensus 142 ~~~Vh~~~~YDleVDTs~~sp~ecA~~I~~~~ 173 (174)
T PF07931_consen 142 AEHVHEGGRYDLEVDTSATSPEECAREILARL 173 (174)
T ss_dssp TTGGGTT---SEEEETTSS-HHHHHHHHHTT-
T ss_pred HhhcccCCCCCEEEECCCCCHHHHHHHHHHHh
Confidence 22 23334699999776 4888888876644
No 105
>PRK03839 putative kinase; Provisional
Probab=98.48 E-value=4.5e-06 Score=81.89 Aligned_cols=84 Identities=13% Similarity=0.121 Sum_probs=48.1
Q ss_pred CCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH----hhh-cCCCcEEEEcC
Q psy11425 217 NVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKE----ISY-ANKFDYIIINN 291 (672)
Q Consensus 217 G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e----~~~-~~~~D~VI~Nd 291 (672)
+..+|+++.+..+ ..+ ..+||+.++ ++++.+|+..|+...+. ....+.....+ ..+ .+...++|..+
T Consensus 65 ~~~vIidG~~~~l-----~~~-~~vi~L~~~-~~~~~~Rl~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~Id~~ 136 (180)
T PRK03839 65 EKNVVLDGHLSHL-----LPV-DYVIVLRAH-PKIIKERLKERGYSKKK-ILENVEAELVDVCLCEALEEKEKVIEVDTT 136 (180)
T ss_pred CCCEEEEeccccc-----cCC-CEEEEEECC-HHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 4557888754321 122 346888865 99999999988743222 12222111111 112 12334556543
Q ss_pred --CHHHHHHHHHHHHHhcc
Q psy11425 292 --KFSKALLQLKAIINANR 308 (672)
Q Consensus 292 --dle~a~~qL~~iI~~~~ 308 (672)
+++++..++.++|....
T Consensus 137 ~~s~eev~~~I~~~l~~~~ 155 (180)
T PRK03839 137 GKTPEEVVEEILELIKSGK 155 (180)
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 59999999999997653
No 106
>PRK07429 phosphoribulokinase; Provisional
Probab=98.48 E-value=7.8e-07 Score=95.70 Aligned_cols=162 Identities=15% Similarity=0.109 Sum_probs=83.5
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC-C-ce-eecccccccCCCC-CCCCcc------cccCCHHHHHHHHHcCCchh
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH-K-IK-LSISTTTRPMRPG-EKNGRE------YYFTNIDNFKKLQKSGKFLE 194 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~-~-~~-~~v~~TTR~~r~~-E~~G~d------Y~fvs~~~F~~~i~~g~fle 194 (672)
..+.+|+|+|+|||||||+++.|.+... . .. .+........+.. ...|.. +++..-.+.-..+..|+-+.
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I~ 85 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPIL 85 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCcee
Confidence 4567999999999999999999998753 1 11 1111111000000 000111 00100011112334454444
Q ss_pred HHhHhccccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHH----HHHHHcCCCCHHHHHHH
Q psy11425 195 WAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLK----ERLYKRGQDKYDVISRR 270 (672)
Q Consensus 195 ~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~----~RL~~Rg~~~~e~i~~r 270 (672)
+..|+ +..|..... ..+...+++|+++....+........ ...|||.++ .+++. +|...|...+.+++..+
T Consensus 86 ~P~yd-~~~g~~~~~--~~i~p~~iVIvEG~~~l~~~~lr~~~-D~~I~Vda~-~evr~~Rri~Rd~~rrG~s~eei~~~ 160 (327)
T PRK07429 86 KPIYN-HETGTFDPP--EYIEPNKIVVVEGLHPLYDERVRELY-DFKVYLDPP-EEVKIAWKIKRDMAKRGHTYEQVLAE 160 (327)
T ss_pred cceee-cCCCCcCCc--EecCCCcEEEEechhhcCcHhHHhhC-CEEEEEECC-HHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 43222 222221111 12344577888886543333222233 456999977 66665 34444434567778888
Q ss_pred HHHHHHHhh-----hcCCCcEEEEcC
Q psy11425 271 ILSANKEIS-----YANKFDYIIINN 291 (672)
Q Consensus 271 l~~~~~e~~-----~~~~~D~VI~Nd 291 (672)
++++..+.. ....+|+||.|.
T Consensus 161 i~~r~pd~~~yI~P~k~~ADiVI~~~ 186 (327)
T PRK07429 161 IEAREPDFEAYIRPQRQWADVVIQFL 186 (327)
T ss_pred HHHhCccHhhhhcccccCCCEEEEcC
Confidence 877654433 367899999887
No 107
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.47 E-value=3.2e-06 Score=82.11 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=40.6
Q ss_pred CcEEEEEeCCCHHHHHHHHHHcCC---------CC-HHHHHHHHHHHHHHhhhcCCCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 238 NAIGIFILPPSLDSLKERLYKRGQ---------DK-YDVISRRILSANKEISYANKFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 238 ~~~vIfI~~ps~e~l~~RL~~Rg~---------~~-~e~i~~rl~~~~~e~~~~~~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
...+||+..| ++++.+|+..|.. .+ .+.+...++.. ...|....+++|.++ +.++...++.+++.+
T Consensus 94 ~~~~v~l~~~-~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r--~~~y~~~a~~~Id~~~~~e~v~~~i~~~l~~ 170 (171)
T PRK03731 94 NGIVIYLCAP-VSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAER--EALYREVAHHIIDATQPPSQVVSEILSALAQ 170 (171)
T ss_pred CCEEEEEECC-HHHHHHHHccccccccCCcCCCCChHHHHHHHHHHH--HHHHHHhCCEEEcCCCCHHHHHHHHHHHHhc
Confidence 3457889876 8999999987632 11 12222222221 123444567888766 589999999888754
No 108
>PLN02459 probable adenylate kinase
Probab=98.46 E-value=4.3e-06 Score=86.83 Aligned_cols=162 Identities=14% Similarity=0.128 Sum_probs=97.1
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchH
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFF 208 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~ 208 (672)
.|+|+|||||||||++..|.+.+...+.+....-|..-.. +.. .-..+...+..|.++.-.-.. .
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~---~t~----lg~~i~~~~~~G~lVPdeiv~--------~ 95 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKS---SGP----LGAQLKEIVNQGKLVPDEIIF--------S 95 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhc---cch----hHHHHHHHHHcCCccCHHHHH--------H
Confidence 4778899999999999999998643344444443321000 000 113345556667765542111 1
Q ss_pred HHHHHHh-----cCCeEEEEeeHHHHHHHHHh---CCCcEEEEEeCCCHHHHHHHHHHc---------------------
Q psy11425 209 PIVREIK-----SNVDILLEIDFQGAKQIKKK---FPNAIGIFILPPSLDSLKERLYKR--------------------- 259 (672)
Q Consensus 209 ~I~~~l~-----~G~~vIldi~~~g~~~l~~~---~~~~~vIfI~~ps~e~l~~RL~~R--------------------- 259 (672)
.+...+. .....|+|+-|....+.... ..-..+|++..| .+++.+|+..|
T Consensus 96 ll~~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~-d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~ 174 (261)
T PLN02459 96 LLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLR-EEVLVEKCLGRRICSECGKNFNVADIDLKGED 174 (261)
T ss_pred HHHHHHhcccccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECC-HHHHHHHhhccccccccCcccccccccccccc
Confidence 1222222 12458899877666554422 222456888876 88888888865
Q ss_pred -----------------------CCCCHHHHHHHHHHHHHHh----h-hcCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 260 -----------------------GQDKYDVISRRILSANKEI----S-YANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 260 -----------------------g~~~~e~i~~rl~~~~~e~----~-~~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
.+++++.+.+|+..+..+. . |.+..-++.+|. ++++++++|..+|..
T Consensus 175 ~~~~~~~~p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~ 251 (261)
T PLN02459 175 GRPGIVMPPLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNL 251 (261)
T ss_pred ccccccCCCCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhch
Confidence 2456788999998876442 2 333333444444 599999999999853
No 109
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.45 E-value=7.7e-07 Score=83.35 Aligned_cols=111 Identities=20% Similarity=0.366 Sum_probs=62.3
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCch---hHHhHhccccCc
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFL---EWAEVHGNFYGT 205 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fl---e~~~~~g~~YGt 205 (672)
+|+++|+|||||||+++.|.+........ .+.+...+.....- .+.......+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~----------------------~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVIS----------------------QDEIRRRLAGEDPPSPSDYIEAEERAYQI 58 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEE----------------------HHHHHHHHCCSSSGCCCCCHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEe----------------------HHHHHHHHcccccccchhHHHHHHHHHHH
Confidence 58999999999999999998775322222 12222222111100 000111112222
Q ss_pred chHHHHHHHhcCCeEEEEeeH------HHHHHHHHhCC-CcEEEEEeCCCHHHHHHHHHHcCCC
Q psy11425 206 SFFPIVREIKSNVDILLEIDF------QGAKQIKKKFP-NAIGIFILPPSLDSLKERLYKRGQD 262 (672)
Q Consensus 206 ~~~~I~~~l~~G~~vIldi~~------~g~~~l~~~~~-~~~vIfI~~ps~e~l~~RL~~Rg~~ 262 (672)
....+...+..|..+|+|... .-+..+.+... ...+|++.++ .+++.+|+..|+..
T Consensus 59 ~~~~~~~~l~~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~-~~~~~~R~~~R~~~ 121 (143)
T PF13671_consen 59 LNAAIRKALRNGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAP-EETLRERLAQRNRE 121 (143)
T ss_dssp HHHHHHHHHHTT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHH-HHHHHHHHHTTHCC
T ss_pred HHHHHHHHHHcCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECC-HHHHHHHHHhcCCc
Confidence 334556677889999998422 22233333344 4566777765 89999999988665
No 110
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.44 E-value=1.1e-06 Score=99.59 Aligned_cols=186 Identities=15% Similarity=0.107 Sum_probs=101.4
Q ss_pred chhHHhhhhhhhhccccccceEEEEeCCCCCChHHHHHHHHhcCCCceee-cccccccCCCCCCCCcccccCCHHHHH--
Q psy11425 108 LSLEAQQRHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLS-ISTTTRPMRPGEKNGREYYFTNIDNFK-- 184 (672)
Q Consensus 108 ~C~~c~~~~E~~~r~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~-v~~TTR~~r~~E~~G~dY~fvs~~~F~-- 184 (672)
.+..||...+.. ....+|+|.|||||||||+++.|....+..+.. ........+ ..+|.|..+..|.
T Consensus 51 ~ira~qlL~~~~-----~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~-----~i~~nfD~P~a~D~d 120 (656)
T PLN02318 51 VIRACQLLAQKN-----DGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSR-----IIDGNFDDPRLTDYD 120 (656)
T ss_pred hhHHHHHHHhcC-----CCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchh-----hhCccCCChhhcchh
Confidence 345555544421 235799999999999999999999886542221 111111111 1334555555443
Q ss_pred ------HHHHcCCchhHHhHhccccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHH-
Q psy11425 185 ------KLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLY- 257 (672)
Q Consensus 185 ------~~i~~g~fle~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~- 257 (672)
..++.|.-+++..|+... +.....-...+....++|+++.+.....++..+ ++.|||++|....+.+|+.
T Consensus 121 ~L~enL~~Lr~GksV~iPiYDf~t-~~r~~~~~i~v~p~~VVIVEGIyaL~~~Lr~Ll--DlkIFVDtdvDirL~RRI~R 197 (656)
T PLN02318 121 TLLDNIHDLKAGKSVQVPIYDFKS-SSRVGYRTLEVPSSRIVIIEGIYALSEKLRPLL--DLRVSVTGGVHFDLVKRVLR 197 (656)
T ss_pred HHHHHHHHHhCCCceecCcccccc-CcccCCceeecCCCcEEEEechhhccHhHHhhC--CEEEEEcCCccHHHHHHHHH
Confidence 224455555554443221 111100001234577899998887766665533 4569999775555666665
Q ss_pred ---HcCCCCHHHHHHHHHHHHH-Hhh----hcCCCcEEEEc--------CC--------HHHHHHHHHHHHHh
Q psy11425 258 ---KRGQDKYDVISRRILSANK-EIS----YANKFDYIIIN--------NK--------FSKALLQLKAIINA 306 (672)
Q Consensus 258 ---~Rg~~~~e~i~~rl~~~~~-e~~----~~~~~D~VI~N--------dd--------le~a~~qL~~iI~~ 306 (672)
.||...++.+.++...... ... ..+.+|++|.| .+ .+-.++++...+..
T Consensus 198 D~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~~~~~~~~i~~~L~~ 270 (656)
T PLN02318 198 DIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSSRSVTVEQIKAVLSE 270 (656)
T ss_pred HHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCCccccHHHHHHHhhh
Confidence 4566444444444333221 122 24578999988 11 14566666666654
No 111
>PRK02496 adk adenylate kinase; Provisional
Probab=98.44 E-value=6.3e-06 Score=81.14 Aligned_cols=160 Identities=19% Similarity=0.203 Sum_probs=85.4
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchH
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFF 208 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~ 208 (672)
.|+|+|||||||||+++.|.+.+...+.......|..... +.. .-......+..|.++.... ...
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~---~~~----~g~~~~~~~~~g~~~~~~~--------~~~ 67 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKE---QTP----LGIKAQGYMDKGELVPDQL--------VLD 67 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhc---cCh----hHHHHHHHHHCCCccCHHH--------HHH
Confidence 4889999999999999999987532233332232221110 000 0011122222333222110 011
Q ss_pred HHHHHHh---cCCeEEEEeeHHHHHH---H---HHhC-CC-cEEEEEeCCCHHHHHHHHHHcCC--CCHHHHHHHHHHHH
Q psy11425 209 PIVREIK---SNVDILLEIDFQGAKQ---I---KKKF-PN-AIGIFILPPSLDSLKERLYKRGQ--DKYDVISRRILSAN 275 (672)
Q Consensus 209 ~I~~~l~---~G~~vIldi~~~g~~~---l---~~~~-~~-~~vIfI~~ps~e~l~~RL~~Rg~--~~~e~i~~rl~~~~ 275 (672)
.+...+. .....|+|+-|....+ + .... .. ..+|++.+| .+.+.+|+..|++ ++++.+.+|+..+.
T Consensus 68 ~l~~~l~~~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~ 146 (184)
T PRK02496 68 LVQERLQQPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVP-DDVVVERLLARGRKDDTEEVIRRRLEVYR 146 (184)
T ss_pred HHHHHHhCcCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 1222222 1234788886643322 1 1111 22 345777765 9999999998875 35577888887765
Q ss_pred HHh----hhc-CCCcEEEEcC--CHHHHHHHHHHHH
Q psy11425 276 KEI----SYA-NKFDYIIINN--KFSKALLQLKAII 304 (672)
Q Consensus 276 ~e~----~~~-~~~D~VI~Nd--dle~a~~qL~~iI 304 (672)
... .|. ...-++.+|. ++++...+|...|
T Consensus 147 ~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l 182 (184)
T PRK02496 147 EQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAAL 182 (184)
T ss_pred HHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 422 222 2223454554 5999999998876
No 112
>PRK06547 hypothetical protein; Provisional
Probab=98.43 E-value=2.6e-06 Score=83.53 Aligned_cols=153 Identities=13% Similarity=0.044 Sum_probs=77.0
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHH-HcCCchhHHhHhccc
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQ-KSGKFLEWAEVHGNF 202 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i-~~g~fle~~~~~g~~ 202 (672)
+..+.+|+|+|+|||||||+++.|.+......+...... .++. +... ..+.+...+ ..|+...+. |. ..
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~-~~~~----~~~~---~~~~l~~~~l~~g~~~~~~-yd-~~ 81 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLY-PGWH----GLAA---ASEHVAEAVLDEGRPGRWR-WD-WA 81 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccccee-cccc----cCCh---HHHHHHHHHHhCCCCceec-CC-CC
Confidence 455679999999999999999999887421111111111 1110 0000 001111111 122222111 11 01
Q ss_pred cCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhC---CCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh-
Q psy11425 203 YGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKF---PNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEI- 278 (672)
Q Consensus 203 YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~---~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~- 278 (672)
.+..... ..+..+.++|+++.......++... ...+.||+.+| .+++.+|+..|+.....-+.+++......+
T Consensus 82 ~~~~~~~--~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~-~~vr~~R~~~Rd~~~~~~~~~w~~~e~~~~~ 158 (172)
T PRK06547 82 NNRPGDW--VSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGP-EALRKERALARDPDYAPHWEMWAAQEERHFA 158 (172)
T ss_pred CCCCCCc--EEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECC-HHHHHHHHHhcCchhhHHHHHHHHHHHHHHh
Confidence 1111111 1233566788887655444443321 22367999987 999999999997653344455554433322
Q ss_pred --hhcCCCcEEEE
Q psy11425 279 --SYANKFDYIII 289 (672)
Q Consensus 279 --~~~~~~D~VI~ 289 (672)
.-...+|.++.
T Consensus 159 ~~~~~~~ad~~~~ 171 (172)
T PRK06547 159 RYDPRDVADWLGS 171 (172)
T ss_pred cCCChhccEEEec
Confidence 22346787764
No 113
>PRK14529 adenylate kinase; Provisional
Probab=98.40 E-value=8.3e-06 Score=83.14 Aligned_cols=159 Identities=21% Similarity=0.174 Sum_probs=95.1
Q ss_pred EEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchHH
Q psy11425 130 FIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFP 209 (672)
Q Consensus 130 IvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~~ 209 (672)
|+|.|||||||||+++.|.+.+...+.+.....|..-.+ |.. .-..+...+..|.++.-.- ....
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~---~t~----lg~~i~~~i~~G~lvpdei--------~~~l 67 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGG---GTE----LGKKAKEYIDRGDLVPDDI--------TIPM 67 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccC---CCh----HHHHHHHHHhccCcchHHH--------HHHH
Confidence 888999999999999999998643334445555542111 111 1234555566666654311 1112
Q ss_pred HHHHHhc--CCeEEEEeeHHHHHHHHHh-------C-CCcEEEEEeCCCHHHHHHHHHHc--------------------
Q psy11425 210 IVREIKS--NVDILLEIDFQGAKQIKKK-------F-PNAIGIFILPPSLDSLKERLYKR-------------------- 259 (672)
Q Consensus 210 I~~~l~~--G~~vIldi~~~g~~~l~~~-------~-~~~~vIfI~~ps~e~l~~RL~~R-------------------- 259 (672)
+...+.+ ..-.|+|+-|....+.... . .-..+|++..| .+++.+|+..|
T Consensus 68 v~~~l~~~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~-~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~ 146 (223)
T PRK14529 68 ILETLKQDGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLP-REVAKNRIMGRRLCKNDNNHPNNIFIDAIKP 146 (223)
T ss_pred HHHHHhccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHhhCCccccccCCcccccccCCCcc
Confidence 2233322 3458899877666554421 1 12346888876 89999999866
Q ss_pred ---------------CCCC-HHHHHHHHHHHHHH-------hhhcC------CCcEEEEcC--CHHHHHHHHHHHH
Q psy11425 260 ---------------GQDK-YDVISRRILSANKE-------ISYAN------KFDYIIINN--KFSKALLQLKAII 304 (672)
Q Consensus 260 ---------------g~~~-~e~i~~rl~~~~~e-------~~~~~------~~D~VI~Nd--dle~a~~qL~~iI 304 (672)
.+++ ++.+++|+..+..+ ..|.. .--++.+|. ++++.+.+|..+|
T Consensus 147 ~~~~cd~~~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 147 DGDVCRVCGGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL 222 (223)
T ss_pred cCCcCcCcCCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 1233 46899999887654 12333 222454554 5899999988776
No 114
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.40 E-value=1.8e-06 Score=95.67 Aligned_cols=176 Identities=10% Similarity=0.044 Sum_probs=92.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCc--c-cccCCHHHHHHHHHcCC-----------
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGR--E-YYFTNIDNFKKLQKSGK----------- 191 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~--d-Y~fvs~~~F~~~i~~g~----------- 191 (672)
.+.+|+++|+|||||||++..|........+..+++.|..-.+-.... . .|..|-... .....+.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~-~~~~~~~~~~~~~~~~~~ 332 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAW-RALLPPGEGLPAEPTRAE 332 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHH-hhccCcccccccccchHH
Confidence 478999999999999999999998863222333333332111100000 0 111111111 1110000
Q ss_pred ----chhHHhHhccccCcchHHHHHHHhcCCeEEEEe---eHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCH
Q psy11425 192 ----FLEWAEVHGNFYGTSFFPIVREIKSNVDILLEI---DFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKY 264 (672)
Q Consensus 192 ----fle~~~~~g~~YGt~~~~I~~~l~~G~~vIldi---~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~ 264 (672)
|....+. .+.-...-+...+..|..+|+++ .|..+..........+.++|..++++...+|...|...+.
T Consensus 333 vi~Gf~~q~~~---V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~~~~ 409 (475)
T PRK12337 333 VLRGFRDQVQQ---VAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRHPYQAGALVVPMLVTLPDEALHRRRFELRDRETG 409 (475)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHhcCCceEEEEEEECCHHHHHHHHHHHhhhcc
Confidence 0000000 00001224456677899999995 5555443333444555567778899999999998865431
Q ss_pred --HHHHHHHHHH-------HHHhhhcCCCcE-EEEcCCHHHHHHHHHHHHH
Q psy11425 265 --DVISRRILSA-------NKEISYANKFDY-IIINNKFSKALLQLKAIIN 305 (672)
Q Consensus 265 --e~i~~rl~~~-------~~e~~~~~~~D~-VI~Nddle~a~~qL~~iI~ 305 (672)
...++.+.+. ..-......++. +|.|.|+|++.+.+.+.|-
T Consensus 410 ~~r~~~ky~~~f~~IR~IQdyLv~~A~~~~ipvI~n~nid~tv~~~l~~i~ 460 (475)
T PRK12337 410 ASRPRERYLRHFEEIRLIQDHLLRLARQEGVPVLPGEDLDESIDKALEVVL 460 (475)
T ss_pred CCCchhHHHHhHHHHHHHHHHHHHHHHHcCCCeecCccHHHHHHHHHHHHH
Confidence 1112222221 111233345565 4555589999999877664
No 115
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.39 E-value=1.3e-07 Score=94.28 Aligned_cols=158 Identities=21% Similarity=0.135 Sum_probs=73.5
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCC--ce------ee--ccccc------ccCCC-CCCCCcccccCCHHHHHHH---HH
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHK--IK------LS--ISTTT------RPMRP-GEKNGREYYFTNIDNFKKL---QK 188 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~--~~------~~--v~~TT------R~~r~-~E~~G~dY~fvs~~~F~~~---i~ 188 (672)
+|+|+|||||||||+++.|...... +. .. ..+.. +..+. ...+-......+-+.|.+. +.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 6999999999999999999876531 11 10 11000 00000 0001011112233333332 34
Q ss_pred cCCchhHHhHhccccCcchHHHHHHHhcCCeEEEEeeHHHHHH-HHHhCCCcEEEEEeCCCHHHHHHH-HH----HcCCC
Q psy11425 189 SGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQ-IKKKFPNAIGIFILPPSLDSLKER-LY----KRGQD 262 (672)
Q Consensus 189 ~g~fle~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~-l~~~~~~~~vIfI~~ps~e~l~~R-L~----~Rg~~ 262 (672)
+|.-+....|..... ..... ...+....++|+++.+..... ++. ..+ +.|||.++ .+....| +. .||..
T Consensus 81 ~g~~i~~p~yd~~~~-~~~~~-~~~~~~~~ivIvEG~~~l~~~~l~~-l~D-~~ifld~~-~~~~l~Rri~RD~~~rG~~ 155 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTG-DRDPW-IIIISPSDIVIVEGIYALYDEELRD-LFD-LKIFLDAD-EDLRLERRIQRDVAERGRS 155 (194)
T ss_dssp TTSCEEEEEEETTTT-EEEEE-EEEEES-SEEEEEETTTTSSHCHGG-G-S-EEEEEEE--HHHHHHHHHHHHHHHS-S-
T ss_pred CCCcccccccccccc-cceee-eeecCCCCEEEEcccceeeeeeecc-cce-eEEEeccc-HHHHHHHHhhhhccccCCc
Confidence 455444433322211 11110 012334577889987655432 332 334 56999987 6654444 43 35655
Q ss_pred CHHHHHHHHHHHHHHh----hhcCCCcEEEEcC
Q psy11425 263 KYDVISRRILSANKEI----SYANKFDYIIINN 291 (672)
Q Consensus 263 ~~e~i~~rl~~~~~e~----~~~~~~D~VI~Nd 291 (672)
.++.+..+......+. .+.+.+|+||.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~I~p~~~~ADivi~~~ 188 (194)
T PF00485_consen 156 PEEVIAQYERVRPGYERYIEPQKERADIVIPSG 188 (194)
T ss_dssp HHHHHHHHHTHHHHHHHCTGGGGGG-SEEEESC
T ss_pred ceeEEEEeecCChhhhhheeccccccEEEECCC
Confidence 4444444442222222 3456899999876
No 116
>PRK13948 shikimate kinase; Provisional
Probab=98.39 E-value=5e-06 Score=82.27 Aligned_cols=154 Identities=12% Similarity=0.092 Sum_probs=80.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccC-
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYG- 204 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YG- 204 (672)
.+..|+|+|++||||||+.+.|.+.. ++.+...+....... |. ..++-|.. + |..|-
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l-g~~~iD~D~~ie~~~----g~----si~~if~~---------~----Ge~~fR 66 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL-MLHFIDTDRYIERVT----GK----SIPEIFRH---------L----GEAYFR 66 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc-CCCEEECCHHHHHHH----hC----CHHHHHHH---------h----CHHHHH
Confidence 35689999999999999999998875 222333222211110 10 00111111 1 10000
Q ss_pred -cchHHHHHHHhcCCeEEEE-----eeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCC--CCHHHHHHHHHHHH-
Q psy11425 205 -TSFFPIVREIKSNVDILLE-----IDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQ--DKYDVISRRILSAN- 275 (672)
Q Consensus 205 -t~~~~I~~~l~~G~~vIld-----i~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~--~~~e~i~~rl~~~~- 275 (672)
.-...+...+..+..||.- ++++....+++ ...+||+.++ ++.+.+|+..+++ ........++....
T Consensus 67 ~~E~~~l~~l~~~~~~VIa~GgG~v~~~~n~~~l~~---~g~vV~L~~~-~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~ 142 (182)
T PRK13948 67 RCEAEVVRRLTRLDYAVISLGGGTFMHEENRRKLLS---RGPVVVLWAS-PETIYERTRPGDRPLLQVEDPLGRIRTLLN 142 (182)
T ss_pred HHHHHHHHHHHhcCCeEEECCCcEEcCHHHHHHHHc---CCeEEEEECC-HHHHHHHhcCCCCCCCCCCChHHHHHHHHH
Confidence 0011233344344444432 34444455554 2456889866 9999999954321 11001112333321
Q ss_pred -HHhhhcCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 276 -KEISYANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 276 -~e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
.+--| ..+|++|.++ +.++...+|.+.+..
T Consensus 143 ~R~~~Y-~~a~~~i~t~~~~~~ei~~~i~~~l~~ 175 (182)
T PRK13948 143 EREPVY-RQATIHVSTDGRRSEEVVEEIVEKLWA 175 (182)
T ss_pred HHHHHH-HhCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 12234 4589999877 488999988888754
No 117
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.39 E-value=3.4e-06 Score=84.32 Aligned_cols=157 Identities=15% Similarity=0.143 Sum_probs=79.8
Q ss_pred cccccceEEEEeCCCCCChHHHHHHHHhcCC--C--ceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHh
Q psy11425 122 SFKSFGNIFIISAPSGAGKSTLVNELLKKDH--K--IKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAE 197 (672)
Q Consensus 122 ~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~--~--~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~ 197 (672)
.+++.+.+|+|+|+|||||||+++.|..... + ..+......|..-. .+..|..-++...
T Consensus 19 ~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~---~~~~~~~~~~~~~-------------- 81 (198)
T PRK03846 19 LHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLC---SDLGFSDADRKEN-------------- 81 (198)
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhh---hcCCcCcccHHHH--------------
Confidence 4456788999999999999999999987642 1 11111111111000 0111211111111
Q ss_pred HhccccCcchHHHHHHHhcCCeEEEEeeH---HHHHHHHHhCC--CcEEEEEeCCCHHHHHHH----HHHcCCCCHHHHH
Q psy11425 198 VHGNFYGTSFFPIVREIKSNVDILLEIDF---QGAKQIKKKFP--NAIGIFILPPSLDSLKER----LYKRGQDKYDVIS 268 (672)
Q Consensus 198 ~~g~~YGt~~~~I~~~l~~G~~vIldi~~---~g~~~l~~~~~--~~~vIfI~~ps~e~l~~R----L~~Rg~~~~e~i~ 268 (672)
|-...+.....+..|.+||..... ..-..++.... ..++||+.+| .+++.+| +..+.+. +.+.
T Consensus 82 -----~~~l~~~a~~~~~~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~-~e~~~~R~~r~l~~~~~~--~~~~ 153 (198)
T PRK03846 82 -----IRRVGEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTP-LAICEARDPKGLYKKARA--GEIR 153 (198)
T ss_pred -----HHHHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCC-HHHHHhcCchhHHHHhhc--CCcc
Confidence 101111223445568777755421 12222333322 2346889876 8888888 1111100 0111
Q ss_pred HHHHHHHHHhhhc--CCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 269 RRILSANKEISYA--NKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 269 ~rl~~~~~e~~~~--~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
. + ......|. ..+|++|.++ ++++.+.+|.+.+..
T Consensus 154 ~-l--~~~r~~Y~~p~~ad~~Idt~~~~~~~vv~~Il~~l~~ 192 (198)
T PRK03846 154 N-F--TGIDSVYEAPESPEIHLDTGEQLVTNLVEQLLDYLRQ 192 (198)
T ss_pred C-c--ccccccCCCCCCCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 1 0 01112354 5689998865 589999999888865
No 118
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.38 E-value=7e-06 Score=86.87 Aligned_cols=142 Identities=13% Similarity=0.156 Sum_probs=79.9
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYG 204 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YG 204 (672)
.+.++|+|+|+|||||||+++.|...+ +.. +. + .....|.. |++.....+
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~~~g--~~~-~d------------~-----~~~~L~~~------l~~~~~~~~---- 53 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALEDLG--YYC-VD------------N-----LPPSLLPK------LVELLAQSG---- 53 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHcC--CeE-EC------------C-----cCHHHHHH------HHHHHHhcC----
Confidence 455799999999999999999997654 221 11 1 11222322 222211000
Q ss_pred cchHHHHHHHhcCCeEEEEeeH--------HHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCC----CHHHHHHHHH
Q psy11425 205 TSFFPIVREIKSNVDILLEIDF--------QGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQD----KYDVISRRIL 272 (672)
Q Consensus 205 t~~~~I~~~l~~G~~vIldi~~--------~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~----~~e~i~~rl~ 272 (672)
....-.+++|+.. ..+..++.......+||+.++ .+++.+|+..+.+. ........+.
T Consensus 54 ---------~~~~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~-~e~L~~Rl~~~rr~RPLl~~~~l~e~I~ 123 (288)
T PRK05416 54 ---------GIRKVAVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDAS-DEVLIRRYSETRRRHPLSGDGSLLEGIE 123 (288)
T ss_pred ---------CCCCeEEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECC-HHHHHHHHhhcccCCCccCCccHHHHHH
Confidence 0112245566531 222344444334567999976 99999999753210 0011222232
Q ss_pred HHHHHh-hhcCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 273 SANKEI-SYANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 273 ~~~~e~-~~~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
...... .+...+|++|.++ +.+++.++|.+++..
T Consensus 124 ~eR~~l~pl~~~ADivIDTs~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 124 LERELLAPLRERADLVIDTSELSVHQLRERIRERFGG 160 (288)
T ss_pred HHHhhhhhHHHhCCEEEECCCCCHHHHHHHHHHHHhc
Confidence 222222 3456799999887 489999999888854
No 119
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.38 E-value=3.4e-06 Score=83.15 Aligned_cols=163 Identities=21% Similarity=0.221 Sum_probs=92.3
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchH
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFF 208 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~ 208 (672)
.|+|.|||||||||+++.|.+.++-.|....+.-|..- ..+.. --.+-...+..|+++...-+. ++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~---~~~t~----lg~~~k~~i~~g~lv~d~i~~----~~v~~ 70 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAI---AERTE----LGEEIKKYIDKGELVPDEIVN----GLVKE 70 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhh---ccCCh----HHHHHHHHHHcCCccchHHHH----HHHHH
Confidence 48899999999999999999996544444333322221 11110 011122224455555442222 22233
Q ss_pred HHHHHHhcCCeEEEEeeHHHHHHH---HH---hC--CCcEEEEEeCCCHHHHHHHHHHcC---CCCHHHHHHHHHHHHHH
Q psy11425 209 PIVREIKSNVDILLEIDFQGAKQI---KK---KF--PNAIGIFILPPSLDSLKERLYKRG---QDKYDVISRRILSANKE 277 (672)
Q Consensus 209 ~I~~~l~~G~~vIldi~~~g~~~l---~~---~~--~~~~vIfI~~ps~e~l~~RL~~Rg---~~~~e~i~~rl~~~~~e 277 (672)
.+... +....+|++.-|..+.+. ++ .. .-..++.+..+ .+.+..|+..|. +++++.+.+|+......
T Consensus 71 rl~~~-d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~-~~~~~~r~~~r~~r~dd~~~~~~~R~~~y~~~ 148 (178)
T COG0563 71 RLDEA-DCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVP-EELLLERLLGRRVREDDNEETVKKRLKVYHEQ 148 (178)
T ss_pred HHHhh-cccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCC-HHHHHHHHhCccccccCCHHHHHHHHHHHHhc
Confidence 33222 211257888766544332 22 21 23556788877 599999999774 56788899998776543
Q ss_pred h-hhcCCCcEEEEcC-CHHHHHHHHHHHH
Q psy11425 278 I-SYANKFDYIIINN-KFSKALLQLKAII 304 (672)
Q Consensus 278 ~-~~~~~~D~VI~Nd-dle~a~~qL~~iI 304 (672)
. ....++.+.|... ++++.++++...+
T Consensus 149 ~~pli~~y~~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 149 TAPLIEYYSVTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred ccchhhhheeeccCCCCHHHHHHHHHHhh
Confidence 2 2222333444444 4888888887764
No 120
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.38 E-value=6.5e-06 Score=80.08 Aligned_cols=154 Identities=16% Similarity=0.198 Sum_probs=82.0
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCC-CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGT 205 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt 205 (672)
.+-|+|+|+.|||||||-+.|.+... .|........+ +. | ....+-|.. +++-.-...
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~--~~----g----~sI~eIF~~---------~GE~~FR~~-- 60 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEK--RT----G----MSIAEIFEE---------EGEEGFRRL-- 60 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHH--HH----C----cCHHHHHHH---------HhHHHHHHH--
Confidence 35699999999999999999988752 33222211110 00 0 001111111 111000000
Q ss_pred chHHHHHHHhcCCeEEEEe-----eHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcC------CCCH-HHHHHHHHH
Q psy11425 206 SFFPIVREIKSNVDILLEI-----DFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRG------QDKY-DVISRRILS 273 (672)
Q Consensus 206 ~~~~I~~~l~~G~~vIldi-----~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg------~~~~-e~i~~rl~~ 273 (672)
-...+..++..+..||--+ +.+....+++.. ++||+.+| ++.+.+|+.... ..++ +.++.-+
T Consensus 61 E~~vl~~l~~~~~~ViaTGGG~v~~~enr~~l~~~g---~vv~L~~~-~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~-- 134 (172)
T COG0703 61 ETEVLKELLEEDNAVIATGGGAVLSEENRNLLKKRG---IVVYLDAP-FETLYERLQRDRKRPLLQTEDPREELEELL-- 134 (172)
T ss_pred HHHHHHHHhhcCCeEEECCCccccCHHHHHHHHhCC---eEEEEeCC-HHHHHHHhccccCCCcccCCChHHHHHHHH--
Confidence 0123444555554444332 334444444432 78999987 999999998321 1222 2222222
Q ss_pred HHHHhhhcCCCcEEEEcCC-HHHHHHHHHHHHHhc
Q psy11425 274 ANKEISYANKFDYIIINNK-FSKALLQLKAIINAN 307 (672)
Q Consensus 274 ~~~e~~~~~~~D~VI~Ndd-le~a~~qL~~iI~~~ 307 (672)
..+.--|...+|+++..++ .+....++...+...
T Consensus 135 ~~R~~~Y~e~a~~~~~~~~~~~~v~~~i~~~l~~~ 169 (172)
T COG0703 135 EERQPLYREVADFIIDTDDRSEEVVEEILEALEGS 169 (172)
T ss_pred HHHHHHHHHhCcEEecCCCCcHHHHHHHHHHHHHh
Confidence 2233456677999998885 477888887777653
No 121
>PRK07667 uridine kinase; Provisional
Probab=98.37 E-value=1.7e-06 Score=86.31 Aligned_cols=158 Identities=20% Similarity=0.164 Sum_probs=77.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCC----Cc-eeeccccccc--CC--CCCCCCccccc--CCHHHHHH----HHHcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDH----KI-KLSISTTTRP--MR--PGEKNGREYYF--TNIDNFKK----LQKSG 190 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~----~~-~~~v~~TTR~--~r--~~E~~G~dY~f--vs~~~F~~----~i~~g 190 (672)
.+.+|+|+|+|||||||+++.|.+... .+ .+.....-++ .+ .+..+-.+|++ .+.+.|.. .+..+
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~~ 95 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNE 95 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcCC
Confidence 347999999999999999999987531 11 1111111110 00 00000011111 12222221 12233
Q ss_pred CchhHHhHhccccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHH
Q psy11425 191 KFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRR 270 (672)
Q Consensus 191 ~fle~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~r 270 (672)
+-+.+..|+... +...... ..+..+.++|+++.+-.-..++. ....+|||.+| .+++.+|+.+|...+.+....|
T Consensus 96 ~~i~~P~~d~~~-~~~~~~~-~~~~~~~vvIvEG~~l~~~~~~~--~~d~~v~V~~~-~~~~~~R~~~r~~~~~~~~~~r 170 (193)
T PRK07667 96 TKLTLPFYHDET-DTCEMKK-VQIPIVGVIVIEGVFLQRKEWRD--FFHYMVYLDCP-RETRFLRESEETQKNLSKFKNR 170 (193)
T ss_pred CeEEEeeecccc-ccccccc-eecCCCCEEEEEehhhhhhhHHh--hceEEEEEECC-HHHHHHHHhcccHhHHHHHHHH
Confidence 333332222111 1111000 11234577888887632222322 34567999987 9999999999876655555555
Q ss_pred HHHHHH-Hh---hhcCCCcEEE
Q psy11425 271 ILSANK-EI---SYANKFDYII 288 (672)
Q Consensus 271 l~~~~~-e~---~~~~~~D~VI 288 (672)
...+.. .+ .-...+|+||
T Consensus 171 ~~~a~~~y~~~~~~~~~ad~i~ 192 (193)
T PRK07667 171 YWKAEDYYLETESPKDRADLVI 192 (193)
T ss_pred hHHHHHHHHhhcChHhhCcEEe
Confidence 432221 11 1234688876
No 122
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.37 E-value=6.8e-06 Score=82.85 Aligned_cols=171 Identities=19% Similarity=0.228 Sum_probs=91.5
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcC--CchhHHh---Hh
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSG--KFLEWAE---VH 199 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g--~fle~~~---~~ 199 (672)
+++++|+|-|.-||||||+++.|.+.+..-++ .-.+||.|..+.. | +.....+..+ .+-...+ |.
T Consensus 1 ~~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~-~v~~trEP~~~~i-g--------e~iR~~ll~~~~~~~~~~e~lLfa 70 (208)
T COG0125 1 MKGMFIVIEGIDGAGKTTQAELLKERLEERGI-KVVLTREPGGTPI-G--------EKIRELLLNGEEKLSPKAEALLFA 70 (208)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEeCCCCChH-H--------HHHHHHHcCCccCCCHHHHHHHHH
Confidence 35789999999999999999999888643332 2256776643211 1 1111111111 1111111 01
Q ss_pred ccccCcchHHHHHHHhcCCeEEEEe------eHHH---------HHHHHHhCC---C-cEEEEEeCCCHHHHHHHHHHcC
Q psy11425 200 GNFYGTSFFPIVREIKSNVDILLEI------DFQG---------AKQIKKKFP---N-AIGIFILPPSLDSLKERLYKRG 260 (672)
Q Consensus 200 g~~YGt~~~~I~~~l~~G~~vIldi------~~~g---------~~~l~~~~~---~-~~vIfI~~ps~e~l~~RL~~Rg 260 (672)
...+.-....|...+..|.+||+|= -+|| +..+....+ . .+++|++.| +++-.+|+.+|+
T Consensus 71 adR~~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~-~e~al~R~~~r~ 149 (208)
T COG0125 71 ADRAQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVP-PEVALERIRKRG 149 (208)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCC-HHHHHHHHHhcC
Confidence 1111111234566677899999882 2232 233333333 3 356777766 999999999996
Q ss_pred CC-CHHHHHHH--HHHH-HHHhhhcCCC--cEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 261 QD-KYDVISRR--ILSA-NKEISYANKF--DYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 261 ~~-~~e~i~~r--l~~~-~~e~~~~~~~--D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
.. +..+.... .++- .........+ -++++|. ++++...++..+|..
T Consensus 150 ~~~~r~E~~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~ 203 (208)
T COG0125 150 ELRDRFEKEDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKE 203 (208)
T ss_pred CccchhhhHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHH
Confidence 64 32221111 1111 1112222233 2444444 489999999888865
No 123
>PLN02924 thymidylate kinase
Probab=98.35 E-value=8.1e-06 Score=83.18 Aligned_cols=165 Identities=13% Similarity=0.133 Sum_probs=85.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCccc-------ccCCHHHHHHHHHcCCchhHHh
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREY-------YFTNIDNFKKLQKSGKFLEWAE 197 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY-------~fvs~~~F~~~i~~g~fle~~~ 197 (672)
.++++|+|.|+.||||||+++.|.+....-++.+ .++|.|..+...|... .-.++..+.-+..
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~--------- 83 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFS--------- 83 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHH---------
Confidence 4678999999999999999999988864333333 3444443211111100 0112222111110
Q ss_pred HhccccCcchHHHHHHHhcCCeEEEEeeH------HH--------HHHHHHhCCCc-EEEEEeCCCHHHHHHHHHHcCCC
Q psy11425 198 VHGNFYGTSFFPIVREIKSNVDILLEIDF------QG--------AKQIKKKFPNA-IGIFILPPSLDSLKERLYKRGQD 262 (672)
Q Consensus 198 ~~g~~YGt~~~~I~~~l~~G~~vIldi~~------~g--------~~~l~~~~~~~-~vIfI~~ps~e~l~~RL~~Rg~~ 262 (672)
...+. ....|...++.|.+||+|=-. ++ +..+....+.| ++||++.| +++..+|...++..
T Consensus 84 --adR~~-~~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~-~~~a~~R~~~~~~~ 159 (220)
T PLN02924 84 --ANRWE-KRSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDIS-PEEAAERGGYGGER 159 (220)
T ss_pred --HHHHH-HHHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHhccCccc
Confidence 00011 124577788889999988311 11 12222223334 56777765 88888886533211
Q ss_pred C-HHHHHHHHHHHHHHhhhcCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 263 K-YDVISRRILSANKEISYANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 263 ~-~e~i~~rl~~~~~e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
- .....+++......+ .. ..+.++|. ++++...+|.++|..
T Consensus 160 ~E~~~~~~rv~~~Y~~l--a~-~~~~vIDa~~sieeV~~~I~~~I~~ 203 (220)
T PLN02924 160 YEKLEFQKKVAKRFQTL--RD-SSWKIIDASQSIEEVEKKIREVVLD 203 (220)
T ss_pred cccHHHHHHHHHHHHHH--hh-cCEEEECCCCCHHHHHHHHHHHHHH
Confidence 1 112223333222222 22 23444444 599999999888854
No 124
>PRK14528 adenylate kinase; Provisional
Probab=98.35 E-value=8e-06 Score=80.97 Aligned_cols=160 Identities=21% Similarity=0.179 Sum_probs=86.0
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcch
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSF 207 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~ 207 (672)
+.|+|+|||||||||+++.|.+.+...+.+....-|.. -..+.. ........+..|.++.... ..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~---~~~~~~----~g~~~~~~~~~g~lvp~~~--------~~ 66 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREA---VKNQTA----MGIEAKRYMDAGDLVPDSV--------VI 66 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHH---hhcCCH----HHHHHHHHHhCCCccCHHH--------HH
Confidence 45899999999999999999887532222222222211 001100 0011223334444332210 01
Q ss_pred HHHHHHHhc---CCeEEEEeeHHHHHHHH-------HhCC-CcEEEEEeCCCHHHHHHHHHHc----C--CCCHHHHHHH
Q psy11425 208 FPIVREIKS---NVDILLEIDFQGAKQIK-------KKFP-NAIGIFILPPSLDSLKERLYKR----G--QDKYDVISRR 270 (672)
Q Consensus 208 ~~I~~~l~~---G~~vIldi~~~g~~~l~-------~~~~-~~~vIfI~~ps~e~l~~RL~~R----g--~~~~e~i~~r 270 (672)
..+...+.+ ....|+|+-|....+.. .... -..+|++..| .+++.+|+..| + +++++.+.+|
T Consensus 67 ~~~~~~l~~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~-~~~~~~Rl~~R~~~~gr~dd~~e~i~~R 145 (186)
T PRK14528 67 GIIKDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVP-DGELLKRLLGRAEIEGRADDNEATIKNR 145 (186)
T ss_pred HHHHHHHhCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhcCccccCCCCCCHHHHHHH
Confidence 112222222 23478888664443322 1111 2346888876 88999999976 2 4568999999
Q ss_pred HHHHHHHh----hh-cCCCcEEEEcC--CHHHHHHHHHHH
Q psy11425 271 ILSANKEI----SY-ANKFDYIIINN--KFSKALLQLKAI 303 (672)
Q Consensus 271 l~~~~~e~----~~-~~~~D~VI~Nd--dle~a~~qL~~i 303 (672)
+..+.... .| ....-++.+|. +.++.+.+|...
T Consensus 146 l~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~ 185 (186)
T PRK14528 146 LDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKE 185 (186)
T ss_pred HHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHh
Confidence 98875432 22 22222444444 588888887653
No 125
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.34 E-value=1.1e-06 Score=89.45 Aligned_cols=23 Identities=30% Similarity=0.200 Sum_probs=20.7
Q ss_pred EEEEeCCCCCChHHHHHHHHhcC
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+|+|+|||||||||+++.|....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998764
No 126
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.33 E-value=6.2e-06 Score=78.21 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=32.9
Q ss_pred CcEEEEEeCCCHHHHHHHHHHcCCC------CHHHHHHHHHHHHHHhhhcCCCcEEEEcCC
Q psy11425 238 NAIGIFILPPSLDSLKERLYKRGQD------KYDVISRRILSANKEISYANKFDYIIINNK 292 (672)
Q Consensus 238 ~~~vIfI~~ps~e~l~~RL~~Rg~~------~~e~i~~rl~~~~~e~~~~~~~D~VI~Ndd 292 (672)
..++|||.+| ++++.+|+..|+.. +.+.+..++... ...|...+|++|..++
T Consensus 92 ~~~~i~l~~~-~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~r--~~~Y~~~ad~~i~~~~ 149 (154)
T cd00464 92 NGIVVWLDAS-PEELLERLARDKTRPLLQDEDPERLRELLEER--EPLYREVADLTIDTDE 149 (154)
T ss_pred CCeEEEEeCC-HHHHHHHhccCCCCCCCCCCCHHHHHHHHHHH--HHHHHHhCcEEEECCC
Confidence 4567999987 99999999887421 112233333222 2335567999998775
No 127
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=98.33 E-value=6e-07 Score=94.65 Aligned_cols=95 Identities=20% Similarity=0.134 Sum_probs=70.2
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCC---------CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHh
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDH---------KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVH 199 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~---------~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~ 199 (672)
+|+|+||+|||||+|+..|.+..+ .++...+.+|++|++.|..|..|||++--++..... .
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~----------v 70 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYS----------A 70 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEc----------H
Confidence 489999999999999999998864 255556899999999999999999986433322111 1
Q ss_pred ccccCcchHHHHHHHhcCCeEEEEeeH-HHHHHHH
Q psy11425 200 GNFYGTSFFPIVREIKSNVDILLEIDF-QGAKQIK 233 (672)
Q Consensus 200 g~~YGt~~~~I~~~l~~G~~vIldi~~-~g~~~l~ 233 (672)
+++|+.....+..+.+.|+.+|+.+-. -.++.+.
T Consensus 71 ~~f~~~a~~~i~~~~~~g~~pi~vGGTg~Yi~all 105 (287)
T TIGR00174 71 ADFQTLALNAIADITARGKIPLLVGGTGLYLKALL 105 (287)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHH
Confidence 345666777888888899988887644 3334443
No 128
>PRK06217 hypothetical protein; Validated
Probab=98.30 E-value=3e-05 Score=76.46 Aligned_cols=101 Identities=16% Similarity=0.131 Sum_probs=58.1
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceee-cccccccCCCCCCCCccccc-CCHHHHHHHHHcCCchhHHhHhccccCcc
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLS-ISTTTRPMRPGEKNGREYYF-TNIDNFKKLQKSGKFLEWAEVHGNFYGTS 206 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~-v~~TTR~~r~~E~~G~dY~f-vs~~~F~~~i~~g~fle~~~~~g~~YGt~ 206 (672)
.|+|+|+|||||||+++.|.+... +.+. .....+.+ ++..+.. ...+.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~-~~~~~~D~~~~~~-----~~~~~~~~~~~~~~----------------------- 53 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD-IPHLDTDDYFWLP-----TDPPFTTKRPPEER----------------------- 53 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-CcEEEcCceeecc-----CCCCccccCCHHHH-----------------------
Confidence 499999999999999999998852 2211 11111111 1111110 111111
Q ss_pred hHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcC
Q psy11425 207 FFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRG 260 (672)
Q Consensus 207 ~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg 260 (672)
...+...+..+...|+++.+...........+ .+||+.+| .+++..|+..|.
T Consensus 54 ~~~~~~~~~~~~~~vi~G~~~~~~~~~~~~~d-~~i~Ld~~-~~~~~~Rl~~R~ 105 (183)
T PRK06217 54 LRLLLEDLRPREGWVLSGSALGWGDPLEPLFD-LVVFLTIP-PELRLERLRLRE 105 (183)
T ss_pred HHHHHHHHhcCCCEEEEccHHHHHHHHHhhCC-EEEEEECC-HHHHHHHHHcCc
Confidence 11222333445668889888765443333333 46899876 999999999874
No 129
>PRK05439 pantothenate kinase; Provisional
Probab=98.30 E-value=1.6e-06 Score=92.32 Aligned_cols=26 Identities=27% Similarity=0.160 Sum_probs=23.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.+|+|+|+|||||||+++.|.+.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~ 109 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQAL 109 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999874
No 130
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.30 E-value=5.1e-06 Score=84.50 Aligned_cols=26 Identities=42% Similarity=0.592 Sum_probs=23.3
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
|+.+|+|+||+||||||+++.|.+.+
T Consensus 1 ~~~~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 1 MAMIIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998865
No 131
>PRK13974 thymidylate kinase; Provisional
Probab=98.30 E-value=1.8e-05 Score=80.08 Aligned_cols=171 Identities=14% Similarity=0.115 Sum_probs=85.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCcee----ecccccccCCCCCCCCcccccCCHHHHHHHHHcC--C-----chh
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKL----SISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSG--K-----FLE 194 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~----~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g--~-----fle 194 (672)
.+.+|+|.|++||||||+++.|.+..+.-+. ..-+.|+.|.... -| +...+.+... . ..+
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~-~g--------~~ir~~l~~~~~~~~~~~~~~ 72 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTL-LG--------KSLRELLLDTSKDNSPSPLAE 72 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCc-hH--------HHHHHHHcCCCcccCCCHHHH
Confidence 3689999999999999999999987642111 1113333332111 01 1122222100 0 000
Q ss_pred HHhHhccccCcchHHHHHHHhcCCeEEEEe---------------eHHHHHHHHHh---CCC-cEEEEEeCCCHHHHHHH
Q psy11425 195 WAEVHGNFYGTSFFPIVREIKSNVDILLEI---------------DFQGAKQIKKK---FPN-AIGIFILPPSLDSLKER 255 (672)
Q Consensus 195 ~~~~~g~~YGt~~~~I~~~l~~G~~vIldi---------------~~~g~~~l~~~---~~~-~~vIfI~~ps~e~l~~R 255 (672)
..-+..+.+-.....+...+..|.+||.|= +...+..+... ... ..+||+++| ++++.+|
T Consensus 73 ~llf~adr~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~-~~~~~~R 151 (212)
T PRK13974 73 LLLYAADRAQHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEIS-VEESIRR 151 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHH
Confidence 000000001001123455667788877661 11113333321 112 346777776 9999999
Q ss_pred HHHcCCCCHHHHHHHHHHH-HH-HhhhcCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 256 LYKRGQDKYDVISRRILSA-NK-EISYANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 256 L~~Rg~~~~e~i~~rl~~~-~~-e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
+..|+++..+......... .. ...|.....++.+|. ++++...++.++|.+
T Consensus 152 ~~~R~dD~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~~~I~~~l~~ 206 (212)
T PRK13974 152 RKNRKPDRIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETISNEIKETLLN 206 (212)
T ss_pred HHhcccCchhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 9888654322211111111 11 122333334554454 599999999998874
No 132
>PRK13949 shikimate kinase; Provisional
Probab=98.29 E-value=2e-05 Score=77.01 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=21.2
Q ss_pred EEEEeCCCCCChHHHHHHHHhcC
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
-|+|+|++||||||+++.|.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 133
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.28 E-value=3.1e-06 Score=89.43 Aligned_cols=179 Identities=20% Similarity=0.168 Sum_probs=89.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeec-ccccc-cCC---CCCCCCcccccCCHHHHHHH---HHcCC--chhH
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSI-STTTR-PMR---PGEKNGREYYFTNIDNFKKL---QKSGK--FLEW 195 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v-~~TTR-~~r---~~E~~G~dY~fvs~~~F~~~---i~~g~--fle~ 195 (672)
.|.+|+|+|+|||||||++..|...+. +...+ .++-| ..| ..+. ....|..+-..+... -.... +..|
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~-~~~vi~~D~~re~~R~~~~~e~-~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~ 168 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLG-IRSVIGTDSIREVMRKIISKEL-LPTLHESSYTAWKSLRRPPPPEPPVIYGF 168 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC-CCEEEechHHHHHHHHhcchhh-ccchhhhhhhhhhcccCCCCCchhhhhhH
Confidence 357899999999999999999998863 22222 22222 000 0000 000010000001000 00000 0001
Q ss_pred HhHhccccCcchHHHHHHHhcCCeEEEEe---eHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHH---
Q psy11425 196 AEVHGNFYGTSFFPIVREIKSNVDILLEI---DFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISR--- 269 (672)
Q Consensus 196 ~~~~g~~YGt~~~~I~~~l~~G~~vIldi---~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~--- 269 (672)
.........-....|...+.+|..+|+++ .|..+......+++.+.+++...+++..++|...|........++
T Consensus 169 ~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~~~~~~~i~~~l~i~~ee~h~~RF~~R~~~~~r~~~~y~~ 248 (301)
T PRK04220 169 ERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKYLENPNVFMFVLTLSDEEAHKARFYARARVSRRPAERYLK 248 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhhhcCCCEEEEEEEECCHHHHHHHHHHHHhhhCCchhhHHH
Confidence 00000000002334566677899999986 555545444455666666667678999999988775432110111
Q ss_pred HHHH----HHHHhhhcCCCcE-EEEcCCHHHHHHHHHHHHHh
Q psy11425 270 RILS----ANKEISYANKFDY-IIINNKFSKALLQLKAIINA 306 (672)
Q Consensus 270 rl~~----~~~e~~~~~~~D~-VI~Nddle~a~~qL~~iI~~ 306 (672)
.+.. +.........+++ +|.|.|++++.+++.+.|..
T Consensus 249 ~~~~ir~iq~~l~~~a~~~~ip~I~n~~i~~s~~~~~~~i~~ 290 (301)
T PRK04220 249 NFEIIREINDYIVEKAKKHGVPVIENISIEETVDKILEIITE 290 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeecCccHHHHHHHHHHHHHH
Confidence 1111 1111222233333 46677999999999887753
No 134
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.28 E-value=8.6e-06 Score=76.41 Aligned_cols=118 Identities=21% Similarity=0.164 Sum_probs=63.6
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchH
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFF 208 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~ 208 (672)
+|+|+|++||||||+++.|.+.. ++.+.... -...+.|...... ...+..+... ...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~-~~~~~~~~----------------~i~~e~~~~~~~~--~~~~~~i~~~----l~~ 57 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL-GLPYLDTG----------------GIRTEEVGKLASE--VAAIPEVRKA----LDE 57 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-CCceeccc----------------cCCHHHHHHHHHH--hcccHhHHHH----HHH
Confidence 58999999999999999999875 22221111 0123333322110 0000000000 011
Q ss_pred HHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHH-----cCCCCHHHHHHHHHHH
Q psy11425 209 PIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYK-----RGQDKYDVISRRILSA 274 (672)
Q Consensus 209 ~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~-----Rg~~~~e~i~~rl~~~ 274 (672)
.+.. +..+..+|+++...+.. + ......+||+.+| ++.+.+|+.. +...+++.+.+++...
T Consensus 58 ~~~~-~~~~~~~Vidg~~~~~~-~--~~~~~~~i~l~~~-~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~ 123 (147)
T cd02020 58 RQRE-LAKKPGIVLEGRDIGTV-V--FPDADLKIFLTAS-PEVRAKRRAKQLQAKGEGVDLEEILAEIIER 123 (147)
T ss_pred HHHH-HhhCCCEEEEeeeeeeE-E--cCCCCEEEEEECC-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 1112 33445678887543221 1 1123467889877 8888888888 5566777777776553
No 135
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.28 E-value=1.3e-05 Score=79.13 Aligned_cols=131 Identities=20% Similarity=0.192 Sum_probs=71.3
Q ss_pred EEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchHH
Q psy11425 130 FIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFP 209 (672)
Q Consensus 130 IvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~~ 209 (672)
|+|+|||||||||+++.|.+.+...++.....-|..-..+ . ..-..+...+..|..+.-. .....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~---~----~~~~~~~~~~~~g~~~~~~--------~~~~l 66 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASG---T----ELGKKAKEYIDSGKLVPDE--------IVIKL 66 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcC---C----hHHHHHHHHHHcCCccCHH--------HHHHH
Confidence 7999999999999999999986333333333322211110 0 0011222223323222110 01112
Q ss_pred HHHHHhc---CCeEEEEeeHHHHHH---HHHhC----CCcEEEEEeCCCHHHHHHHHHHcC-------------------
Q psy11425 210 IVREIKS---NVDILLEIDFQGAKQ---IKKKF----PNAIGIFILPPSLDSLKERLYKRG------------------- 260 (672)
Q Consensus 210 I~~~l~~---G~~vIldi~~~g~~~---l~~~~----~~~~vIfI~~ps~e~l~~RL~~Rg------------------- 260 (672)
+...+.. +..+|+++-|....+ +.+.. ....+||+.+| ++++.+|+..|.
T Consensus 67 ~~~~l~~~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~ 145 (194)
T cd01428 67 LKERLKKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVP-DEVLIERILGRRICPVSGRVYHLGKDDVTGE 145 (194)
T ss_pred HHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCcCCCcCCcCCcCCCcccCC
Confidence 2233332 456788875543322 22222 33456888876 899999999875
Q ss_pred ------CCCHHHHHHHHHHHHH
Q psy11425 261 ------QDKYDVISRRILSANK 276 (672)
Q Consensus 261 ------~~~~e~i~~rl~~~~~ 276 (672)
+++.+.+++|+..+..
T Consensus 146 ~l~~r~dd~~~~i~~R~~~y~~ 167 (194)
T cd01428 146 PLSQRSDDNEETIKKRLEVYKE 167 (194)
T ss_pred ccccCCCCCHHHHHHHHHHHHH
Confidence 2356778888877653
No 136
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.26 E-value=1.6e-06 Score=91.75 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=22.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.+|+|.||+||||||+++.|...
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999877443
No 137
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.25 E-value=6.4e-06 Score=81.51 Aligned_cols=178 Identities=15% Similarity=0.158 Sum_probs=90.7
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccc--cCCHHHHHHHHHcCCchhHHhHhccccCc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYY--FTNIDNFKKLQKSGKFLEWAEVHGNFYGT 205 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~--fvs~~~F~~~i~~g~fle~~~~~g~~YGt 205 (672)
+.|++||+|||||||+++.|++....-...+.|.+ .||. |.+.+.|..... .+.|. .....|
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~----------kdy~~~i~~DEslpi~ke--~yres--~~ks~~-- 65 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLE----------KDYLRGILWDESLPILKE--VYRES--FLKSVE-- 65 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccc----------hhhhhheecccccchHHH--HHHHH--HHHHHH--
Confidence 57999999999999999999887532222222222 1111 111111111000 00000 000001
Q ss_pred chHHHHHHHhcCCeEEEEe-e------HHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHH
Q psy11425 206 SFFPIVREIKSNVDILLEI-D------FQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDK-YDVISRRILSANKE 277 (672)
Q Consensus 206 ~~~~I~~~l~~G~~vIldi-~------~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~-~e~i~~rl~~~~~e 277 (672)
+ .+..+++ +..||+|- + ++.+-..++..-...+|++.+| ++++.+|-..|+..- ++.+++.+.++..-
T Consensus 66 -r-lldSalk-n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~p-lDtc~rrN~ergepip~Evl~qly~RfEeP 141 (261)
T COG4088 66 -R-LLDSALK-NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTP-LDTCLRRNRERGEPIPEEVLRQLYDRFEEP 141 (261)
T ss_pred -H-HHHHHhc-ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccC-HHHHHHhhccCCCCCCHHHHHHHHHhhcCC
Confidence 1 2222333 56777773 2 2333333444445678888887 999999988888754 45555555554321
Q ss_pred --hhhcCCCcEEEEcC-CHHHHHHHHHHH---HHhcccccccccchhhhhhhhc
Q psy11425 278 --ISYANKFDYIIINN-KFSKALLQLKAI---INANRCFMARVTIEDGLKKINN 325 (672)
Q Consensus 278 --~~~~~~~D~VI~Nd-dle~a~~qL~~i---I~~~~~~m~r~~~~~~~~~~~~ 325 (672)
...+...-++|... +..+.+..+... ++...-.-.+...|..+++|+.
T Consensus 142 n~~~rWDspll~id~~d~~t~~IDfiesvl~~vekpke~n~~yvld~~tnkvi~ 195 (261)
T COG4088 142 NPDRRWDSPLLVIDDSDVSTEVIDFIESVLRLVEKPKERNRRYVLDSSTNKVIV 195 (261)
T ss_pred CCCccccCceEEEecccccccchhHHHHHHHhccChhhcCceEecchhhHHHHH
Confidence 23445566777633 334444444443 3333333345566666777665
No 138
>PRK00625 shikimate kinase; Provisional
Probab=98.24 E-value=1.7e-05 Score=77.87 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=21.2
Q ss_pred EEEEeCCCCCChHHHHHHHHhcC
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.|+|+|++||||||+++.|.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998874
No 139
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.18 E-value=1.3e-05 Score=79.08 Aligned_cols=29 Identities=38% Similarity=0.418 Sum_probs=25.2
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...++.+|+|+|+|||||||+++.|....
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 33567899999999999999999998774
No 140
>PRK13976 thymidylate kinase; Provisional
Probab=98.17 E-value=3.5e-05 Score=77.94 Aligned_cols=169 Identities=14% Similarity=0.087 Sum_probs=83.5
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCCCc-eeecccccccCCCCCCCCcccccCCHHHHHHHHHc-CCchhHHh---Hhccc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDHKI-KLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKS-GKFLEWAE---VHGNF 202 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~~~-~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~-g~fle~~~---~~g~~ 202 (672)
++|+|.|..||||||+++.|.+..... +....++||.|. |..+ .+.....+.. +.+-...+ +....
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~-----~~~~----g~~ir~~l~~~~~~~~~~~~llf~a~R 71 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPG-----GTSF----NELVRGLLLSLKNLDKISELLLFIAMR 71 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCC-----CCHH----HHHHHHHHcCCcCCCHHHHHHHHHHHH
Confidence 479999999999999999998876321 211224555553 1110 0111111111 00100000 11111
Q ss_pred cCcchHHHHHHHhcCCeEEEEe------eH---------HHHHHHHHhC--CC-cEEEEEeCCCHHHHHHHHHHcCCCC-
Q psy11425 203 YGTSFFPIVREIKSNVDILLEI------DF---------QGAKQIKKKF--PN-AIGIFILPPSLDSLKERLYKRGQDK- 263 (672)
Q Consensus 203 YGt~~~~I~~~l~~G~~vIldi------~~---------~g~~~l~~~~--~~-~~vIfI~~ps~e~l~~RL~~Rg~~~- 263 (672)
+......|...+++|.+||.|= -+ ..+..+.... +. ..+||++.| +++..+|+..++.+.
T Consensus 72 ~~~~~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~-~e~a~~Ri~~~~~e~~ 150 (209)
T PRK13976 72 REHFVKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDID-IELSLSRADKNGYEFM 150 (209)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCC-HHHHHHHhcccchhcc
Confidence 1111234566778899999882 11 1223333221 12 346777776 999999986554321
Q ss_pred HHHHHHHHHHHHHHhhhcCC-CcEEEEc----CC---HHHHHHHHHHHHHh
Q psy11425 264 YDVISRRILSANKEISYANK-FDYIIIN----NK---FSKALLQLKAIINA 306 (672)
Q Consensus 264 ~e~i~~rl~~~~~e~~~~~~-~D~VI~N----dd---le~a~~qL~~iI~~ 306 (672)
..+...++.....++..... .-.+|.+ ++ +++..++|.++|..
T Consensus 151 ~~~~l~~v~~~Y~~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~ 201 (209)
T PRK13976 151 DLEFYDKVRKGFREIVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHA 201 (209)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHH
Confidence 12233344333333321111 1123333 13 88999999888854
No 141
>PRK07933 thymidylate kinase; Validated
Probab=98.16 E-value=4.9e-05 Score=77.06 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=22.5
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
++|+|.|+.||||||+++.|.+...
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~ 25 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALE 25 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999988763
No 142
>PRK08118 topology modulation protein; Reviewed
Probab=98.15 E-value=1.5e-05 Score=77.72 Aligned_cols=97 Identities=19% Similarity=0.189 Sum_probs=53.9
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchH
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFF 208 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~ 208 (672)
-|+|+|||||||||+++.|.+....-++.....-.. ..+..++++++...+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~--------~~w~~~~~~~~~~~~--------------------- 53 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK--------PNWEGVPKEEQITVQ--------------------- 53 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc--------cCCcCCCHHHHHHHH---------------------
Confidence 589999999999999999988752100111000000 011223333332221
Q ss_pred HHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHc
Q psy11425 209 PIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKR 259 (672)
Q Consensus 209 ~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~R 259 (672)
...+ ++...|+|+.+......+-... ..+||+++| .+++..|+..|
T Consensus 54 --~~~~-~~~~wVidG~~~~~~~~~l~~~-d~vi~Ld~p-~~~~~~R~~~R 99 (167)
T PRK08118 54 --NELV-KEDEWIIDGNYGGTMDIRLNAA-DTIIFLDIP-RTICLYRAFKR 99 (167)
T ss_pred --HHHh-cCCCEEEeCCcchHHHHHHHhC-CEEEEEeCC-HHHHHHHHHHH
Confidence 1222 2355788887765444333333 446999987 77777777665
No 143
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.15 E-value=1.6e-05 Score=81.28 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=23.3
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
++.+|+|+|++||||||+++.|.+.+
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~ 28 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKL 28 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998775
No 144
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.14 E-value=3.7e-06 Score=87.29 Aligned_cols=155 Identities=12% Similarity=-0.007 Sum_probs=77.9
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCC--C--cee-ecccc---cccCCC-----CCCCCcccccCC--HHHHHHH-------
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDH--K--IKL-SISTT---TRPMRP-----GEKNGREYYFTN--IDNFKKL------- 186 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~--~--~~~-~v~~T---TR~~r~-----~E~~G~dY~fvs--~~~F~~~------- 186 (672)
+|+|+|+|||||||+++.|.+.+. + ... ..... .|.... .+..+ ++|.. ++.|+-.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~--~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAG--RNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcC--CCCCCCCcccccHHHHHHHHH
Confidence 589999999999999998876542 1 111 11111 111110 01122 33333 4443322
Q ss_pred -HHcCCchhHHhHhcc---------ccCcchHHHHHHHhcCCeEEEEeeHHHH----HHHHHhCCCcEEEEEeCCCHHHH
Q psy11425 187 -QKSGKFLEWAEVHGN---------FYGTSFFPIVREIKSNVDILLEIDFQGA----KQIKKKFPNAIGIFILPPSLDSL 252 (672)
Q Consensus 187 -i~~g~fle~~~~~g~---------~YGt~~~~I~~~l~~G~~vIldi~~~g~----~~l~~~~~~~~vIfI~~ps~e~l 252 (672)
+.+|.-++...|... .-|+.... ........++|+++-..++ ..+++ ..|. .|||+|+..-.+
T Consensus 79 ~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~-~~~~~p~dvIivEGLhg~~~~~~~~lr~-~~Dl-kIfVd~~~dlr~ 155 (277)
T cd02029 79 TYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPW-EDLPEDTDLLFYEGLHGGVVTEGYNVAQ-HADL-LVGVVPIINLEW 155 (277)
T ss_pred HHHcCCCcccceeeccccccccccCCCCccCCc-ccccCCCcEEEECCCCcccccccHHHHH-hCCe-EEEecCcHHHHH
Confidence 233444443333211 11322111 1123445566777654332 23433 3344 599998877777
Q ss_pred HHHHH----HcCCCCHHHHHHHHHHHHHHhhh----cCCCcEEE
Q psy11425 253 KERLY----KRGQDKYDVISRRILSANKEISY----ANKFDYII 288 (672)
Q Consensus 253 ~~RL~----~Rg~~~~e~i~~rl~~~~~e~~~----~~~~D~VI 288 (672)
.+|+. +||+..++.+...+.+......| ....|.++
T Consensus 156 irRI~RD~~ERGrs~EsVi~qilrrmpdy~~yI~PQ~~~tDI~f 199 (277)
T cd02029 156 IQKIHRDTAERGYSAEAVMDTILRRMPDYINYICPQFSRTDINF 199 (277)
T ss_pred HHHHHhhhHhhCCCHHHHHHHHHHhCchHHhhCCcccccCcEEE
Confidence 77776 47877766666666554333333 24566665
No 145
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.14 E-value=5.9e-06 Score=82.05 Aligned_cols=128 Identities=13% Similarity=0.022 Sum_probs=64.6
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCce-eecccccccCCCCCCCC-cccccCCHHHHH-----HH---HHcCCchhHHhH
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIK-LSISTTTRPMRPGEKNG-REYYFTNIDNFK-----KL---QKSGKFLEWAEV 198 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~-~~v~~TTR~~r~~E~~G-~dY~fvs~~~F~-----~~---i~~g~fle~~~~ 198 (672)
+|+|+|+|||||||+++.|.+..+... +.....-.+........ ..++|..++.|+ +. +.++..+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~--- 77 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPK--- 77 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccC---
Confidence 589999999999999999999863222 22221111111111110 124454444333 22 223332111
Q ss_pred hccccCcchH---------------HHHHHHhcCCeEEEEeeHHHH-HHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCC
Q psy11425 199 HGNFYGTSFF---------------PIVREIKSNVDILLEIDFQGA-KQIKKKFPNAIGIFILPPSLDSLKERLYKRGQD 262 (672)
Q Consensus 199 ~g~~YGt~~~---------------~I~~~l~~G~~vIldi~~~g~-~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~ 262 (672)
....++.... .........++||+++..... ..++. .....|||.+| .+++.+|...|+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~--l~D~~Ifvd~~-~d~~~~Rr~~R~~~ 154 (187)
T cd02024 78 FLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVD--LFDIRYFLRVP-YETCKRRREARTGY 154 (187)
T ss_pred cccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHh--hcCceeEecCC-HHHHHHHHHHcCCc
Confidence 1111111100 000123345678888865433 23332 33456999986 88888888888643
No 146
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.13 E-value=8.2e-06 Score=80.43 Aligned_cols=138 Identities=18% Similarity=0.120 Sum_probs=70.5
Q ss_pred EEEEeCCCCCChHHHHHHHHhcC----CCc-eeecccccccCCCCCCCCccccc---CCHHHHHHH---HHcCCchhHHh
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKD----HKI-KLSISTTTRPMRPGEKNGREYYF---TNIDNFKKL---QKSGKFLEWAE 197 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~----~~~-~~~v~~TTR~~r~~E~~G~dY~f---vs~~~F~~~---i~~g~fle~~~ 197 (672)
+|+|+|+|||||||+++.|.+.. +.. .+.....-++....+...-.|.+ .+-+.|.+. +..|.-+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 58999999999999999998874 221 22222222221111111111111 233344433 23444444433
Q ss_pred HhccccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHH-HHHHHHH----HcCCCCHHHHHH
Q psy11425 198 VHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLD-SLKERLY----KRGQDKYDVISR 269 (672)
Q Consensus 198 ~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e-~l~~RL~----~Rg~~~~e~i~~ 269 (672)
|+-... .....-...+....++|+++.+.....++.. ..+.|||.+|... .+.+|+. .||....+.+..
T Consensus 81 yd~~~~-~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~--~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~ 154 (179)
T cd02028 81 YDFRTG-KRRGYRKLKLPPSGVVILEGIYALNERLRSL--LDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILM 154 (179)
T ss_pred ceeECC-ccCCCceEEeCCCCEEEEecHHhcCHhHHhh--cCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhh
Confidence 322221 1111000123456778899877766656553 3456999988443 4666664 466665555554
No 147
>PRK15453 phosphoribulokinase; Provisional
Probab=98.12 E-value=1.6e-05 Score=83.25 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++++|+|+|+|||||||+++.|.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999997654
No 148
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.12 E-value=8.4e-05 Score=75.58 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=21.1
Q ss_pred EEEEeCCCCCChHHHHHHHHhcC
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+|+|.|..||||||+++.|.+..
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l 23 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKL 23 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 149
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.11 E-value=4.3e-05 Score=72.49 Aligned_cols=113 Identities=15% Similarity=0.102 Sum_probs=57.7
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCC--CCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcc
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRP--GEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTS 206 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~--~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~ 206 (672)
+|+|+|+|||||||+++.|.+.. +..+....+-+.... ....|..+.......+...+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 61 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-GAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALT------------------ 61 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-CCEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHH------------------
Confidence 58899999999999999998874 222222222221100 001122221111111111110
Q ss_pred hHHHHHHHhcCCeEEEEeeH--HHH-HHHHHh--CCCcEEEEEeCCCHHHHHHHHHHcCC
Q psy11425 207 FFPIVREIKSNVDILLEIDF--QGA-KQIKKK--FPNAIGIFILPPSLDSLKERLYKRGQ 261 (672)
Q Consensus 207 ~~~I~~~l~~G~~vIldi~~--~g~-~~l~~~--~~~~~vIfI~~ps~e~l~~RL~~Rg~ 261 (672)
..........|..+|++... ... ..++.. .....+|++.+| ++++.+|+..|..
T Consensus 62 ~~~~~~l~~~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~-~~~~~~R~~~R~~ 120 (150)
T cd02021 62 DALLAKLASAGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGP-REVLAERLAARKG 120 (150)
T ss_pred HHHHHHHHhCCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECC-HHHHHHHHHhccc
Confidence 00111122467778888543 121 222222 134567888876 8999999999954
No 150
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.10 E-value=3.4e-05 Score=78.54 Aligned_cols=181 Identities=20% Similarity=0.220 Sum_probs=95.9
Q ss_pred hhhhhhhhcccccc-ceEEEEeCCCCCChHHHHHHHHhcCCCceeecc-ccccc-CCCCCCCCcccccCCHHHHHHHHHc
Q psy11425 113 QQRHELKKKSFKSF-GNIFIISAPSGAGKSTLVNELLKKDHKIKLSIS-TTTRP-MRPGEKNGREYYFTNIDNFKKLQKS 189 (672)
Q Consensus 113 ~~~~E~~~r~~~~~-~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~-~TTR~-~r~~E~~G~dY~fvs~~~F~~~i~~ 189 (672)
..+|....+...++ +.+|.|-|+||+||||++..|+... +....++ +..|. .|+ +++++ ...-+..
T Consensus 74 a~rY~lwR~ir~~~~p~IILIGGasGVGkStIA~ElA~rL-gI~~visTD~IREvlR~---------ii~~~-l~PtLh~ 142 (299)
T COG2074 74 AKRYLLWRRIRKMKRPLIILIGGASGVGKSTIAGELARRL-GIRSVISTDSIREVLRK---------IISPE-LLPTLHT 142 (299)
T ss_pred HHHHHHHHHHhccCCCeEEEecCCCCCChhHHHHHHHHHc-CCceeecchHHHHHHHH---------hCCHH-hcchhhH
Confidence 44566666655555 6778888899999999999998775 2211111 00000 000 11111 0011111
Q ss_pred CCchhHHhHhcc-----------------ccCcchHHHHHHHhcCCeEEEEeeH---HHHHHHHHhCCCcEEEEEeCCCH
Q psy11425 190 GKFLEWAEVHGN-----------------FYGTSFFPIVREIKSNVDILLEIDF---QGAKQIKKKFPNAIGIFILPPSL 249 (672)
Q Consensus 190 g~fle~~~~~g~-----------------~YGt~~~~I~~~l~~G~~vIldi~~---~g~~~l~~~~~~~~vIfI~~ps~ 249 (672)
.-|.-|..+.+. .-|+. .-|.+.+.+|.++|+++-. ..+..... ..+.+..++..+++
T Consensus 143 Ssy~Awkalr~~~~~~piiaGF~dqa~~V~~GI~-~VI~RAi~eG~~lIIEGvHlVPg~i~~~~~-~~n~~~~~l~i~de 220 (299)
T COG2074 143 SSYDAWKALRDPTDENPIIAGFEDQASAVMVGIE-AVIERAIEEGEDLIIEGVHLVPGLIKEEAL-GNNVFMFMLYIADE 220 (299)
T ss_pred hHHHHHHHhcCCCCCcchhhhHHHHhHHHHHHHH-HHHHHHHhcCcceEEEeeeeccccccHhhh-ccceEEEEEEeCCH
Confidence 222223222111 11222 2456677789999988632 22222222 34456677778889
Q ss_pred HHHHHHHHHcCCCCH--HHHHHHHHHH---HH----HhhhcCCCcE-EEEcCCHHHHHHHHHHHHHh
Q psy11425 250 DSLKERLYKRGQDKY--DVISRRILSA---NK----EISYANKFDY-IIINNKFSKALLQLKAIINA 306 (672)
Q Consensus 250 e~l~~RL~~Rg~~~~--e~i~~rl~~~---~~----e~~~~~~~D~-VI~Nddle~a~~qL~~iI~~ 306 (672)
+..+.|...|.+.+- .-..+.++.. .. -+.....++. ||.|+|++++.+++.+.|.+
T Consensus 221 e~Hr~RF~~R~~~t~~~rp~~Ryl~yf~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~il~~i~~ 287 (299)
T COG2074 221 ELHRERFYDRIRYTHASRPGGRYLEYFKEIRTIHDYLVERAREHGVPVIENDDIDETVDRILEDIRK 287 (299)
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccHHHHHHHHHHHHHH
Confidence 999999998876541 0011111111 11 1123345665 67777899999999888864
No 151
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.10 E-value=3.1e-05 Score=76.20 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+.+++|+|+|||||||+++.|....
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998875
No 152
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.09 E-value=2.4e-05 Score=88.64 Aligned_cols=92 Identities=11% Similarity=0.122 Sum_probs=51.0
Q ss_pred CeEEEEeeHHHHHHHHHhCCC-cEEEEEeCCCHHHHHHHHH----HcCC--CCHHHHHHHHH-HHHHHh-----hhcCC-
Q psy11425 218 VDILLEIDFQGAKQIKKKFPN-AIGIFILPPSLDSLKERLY----KRGQ--DKYDVISRRIL-SANKEI-----SYANK- 283 (672)
Q Consensus 218 ~~vIldi~~~g~~~l~~~~~~-~~vIfI~~ps~e~l~~RL~----~Rg~--~~~e~i~~rl~-~~~~e~-----~~~~~- 283 (672)
+.+|+|+.-.|.. .+++ .+-||++++ ++++.+|.. .|+. .+.+.+...+. +...+. .....
T Consensus 404 ~~iV~eGRDigtv----V~P~AdlKIfL~As-~evRa~RR~~~l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~ 478 (512)
T PRK13477 404 GGLVAEGRDIGTH----VFPDAELKIFLTAS-VEERARRRALDLQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKAD 478 (512)
T ss_pred CCEEEEcccceeE----EcCCCCEEEEEECC-HHHHHHHHHhhhhhCCCccCCHHHHHHHHHHHHhhhcccccccccccC
Confidence 3467776322211 1343 456889876 777777643 3543 22344433332 222222 22233
Q ss_pred CcEEEEcC--CHHHHHHHHHHHHHhcccccccc
Q psy11425 284 FDYIIINN--KFSKALLQLKAIINANRCFMARV 314 (672)
Q Consensus 284 ~D~VI~Nd--dle~a~~qL~~iI~~~~~~m~r~ 314 (672)
.+++|.++ ++++.+.+|.+.+....+...||
T Consensus 479 dai~IDTs~lsieeVv~~Il~~i~~~~~~~~~~ 511 (512)
T PRK13477 479 DAIELITDGLSIEEVVDKIIDLYRDRIPEEVWP 511 (512)
T ss_pred CeEEEECCCCCHHHHHHHHHHHHHHhCccccCC
Confidence 34666666 49999999999997755555555
No 153
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.08 E-value=0.00013 Score=74.83 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.8
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
-|+|+|||||||||+++.|.+.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 399999999999999999999863
No 154
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.07 E-value=2.8e-05 Score=89.77 Aligned_cols=156 Identities=15% Similarity=0.106 Sum_probs=83.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCC-----ceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHh
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHK-----IKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVH 199 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~-----~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~ 199 (672)
..+.+|+|+|+||||||||++.|.+.... +.+...+.-|..- .|.. .|...+.
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l----~ge~-~f~~~er----------------- 447 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHL----SSEL-GFSKEDR----------------- 447 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhc----cCCC-CCCHHHH-----------------
Confidence 34679999999999999999999887521 1222222222211 1111 1111000
Q ss_pred ccccCcchHHHHHHHhcCCeEEEEeeH------HHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcC--CCCHHHHHHHH
Q psy11425 200 GNFYGTSFFPIVREIKSNVDILLEIDF------QGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRG--QDKYDVISRRI 271 (672)
Q Consensus 200 g~~YGt~~~~I~~~l~~G~~vIldi~~------~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg--~~~~e~i~~rl 271 (672)
...|.........+++.|..+|++... ...+.+.+.....++||+.+| .+++.+|+.+.- ....+.++..+
T Consensus 448 ~~~~~~l~~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p-~e~l~~R~rr~Ll~~~~~~~i~~l~ 526 (568)
T PRK05537 448 DLNILRIGFVASEITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATP-LEVCEQRDRKGLYAKAREGKIKGFT 526 (568)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCC-HHHHHHhccccccccchhchhhccc
Confidence 001111111234567789888888521 223333333333457888876 889999864210 00111111111
Q ss_pred HHHHHHhhhc--CCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 272 LSANKEISYA--NKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 272 ~~~~~e~~~~--~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
.....|. ..+|++|.++ +++++.++|...|..
T Consensus 527 ---~~R~~yy~p~~Adl~IDt~~~s~~eiv~~Il~~L~~ 562 (568)
T PRK05537 527 ---GISDPYEPPANPELVIDTTNVTPDECAHKILLYLEE 562 (568)
T ss_pred ---cccccccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 1112233 4689999877 489999999888764
No 155
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.04 E-value=2.1e-05 Score=77.50 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=78.9
Q ss_pred EeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHH-cCCchhHHh---HhccccCcch
Q psy11425 132 ISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQK-SGKFLEWAE---VHGNFYGTSF 207 (672)
Q Consensus 132 LtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~-~g~fle~~~---~~g~~YGt~~ 207 (672)
|-|+.||||||+++.|.+.....+.. -..++++..+. ..+.+.+.+. ...+-.... +.........
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~-~~~~~~~~~~~---------~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~ 70 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYK-VIITFPPGSTP---------IGELIRELLRSESELSPEAEALLFAADRAWHLA 70 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEE-EEEEESSTSSH---------HHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCCh---------HHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 56999999999999998886432222 22344442211 1223333333 111111100 0000000011
Q ss_pred HHHHHHHhcCCeEEEEe---------------eHHHHHHHHHhCC--Cc-EEEEEeCCCHHHHHHHHHHcCC----CCH-
Q psy11425 208 FPIVREIKSNVDILLEI---------------DFQGAKQIKKKFP--NA-IGIFILPPSLDSLKERLYKRGQ----DKY- 264 (672)
Q Consensus 208 ~~I~~~l~~G~~vIldi---------------~~~g~~~l~~~~~--~~-~vIfI~~ps~e~l~~RL~~Rg~----~~~- 264 (672)
..|...++.|.+||+|= ++..+..+....+ .| .+||++.+ +++..+|+..|+. ...
T Consensus 71 ~~I~~~l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~-pe~~~~R~~~r~~~~~~~~~~ 149 (186)
T PF02223_consen 71 RVIRPALKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVD-PEEALKRIAKRGEKDDEEEED 149 (186)
T ss_dssp HTHHHHHHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECC-HHHHHHHHHHTSSTTTTTTHH
T ss_pred HHHHHHHcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecC-HHHHHHHHHcCCccchHHHHH
Confidence 34566778899999992 1223333333322 33 45777765 9999999999987 111
Q ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEcC--CHHHHHHHH
Q psy11425 265 DVISRRILSANKEISYANKFDYIIINN--KFSKALLQL 300 (672)
Q Consensus 265 e~i~~rl~~~~~e~~~~~~~D~VI~Nd--dle~a~~qL 300 (672)
.....++.....++.. ....++|+|. ++++..++|
T Consensus 150 ~~~~~~~~~~y~~l~~-~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 150 LEYLRRVREAYLELAK-DPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TTTTEEEEETTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCCCEEEEECCCCHHHHHhhC
Confidence 1222222222222222 3556666665 477777664
No 156
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.03 E-value=0.00017 Score=70.07 Aligned_cols=68 Identities=13% Similarity=0.253 Sum_probs=39.3
Q ss_pred CCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhc--CCCcEEEEcCC--HHHHHHHHHHHHHh
Q psy11425 236 FPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYA--NKFDYIIINNK--FSKALLQLKAIINA 306 (672)
Q Consensus 236 ~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~--~~~D~VI~Ndd--le~a~~qL~~iI~~ 306 (672)
.....+||+.+| .+++.+|+..|... ... -..+.+|...++-. ..-+.++++.+ .++...++...+.+
T Consensus 89 ~~~~~~v~l~a~-~~~l~~Rl~~R~~~-~a~-~~vl~~Q~~~~ep~~~~e~~~~~id~~~~~~~~~~~~~~~~~~ 160 (163)
T PRK11545 89 NPNLSFIYLKGD-FDVIESRLKARKGH-FFK-TQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKK 160 (163)
T ss_pred CCCEEEEEEECC-HHHHHHHHHhccCC-CCC-HHHHHHHHHHcCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 345667888876 99999999999652 111 11122232222211 11345555553 67888888877754
No 157
>PLN02842 nucleotide kinase
Probab=98.02 E-value=6.5e-05 Score=84.68 Aligned_cols=260 Identities=17% Similarity=0.116 Sum_probs=130.9
Q ss_pred EEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchHHH
Q psy11425 131 IISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPI 210 (672)
Q Consensus 131 vLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~~I 210 (672)
.|+|+|||||||+++.|.+.+...+.+..+..|..- ..+.. .-....+.+..|.++......... .+.+
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev---~~~T~----iG~~Ire~l~~G~lvPdeiv~~ll----~drl 69 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEV---SAGTD----IGKRAKEFMNSGRLVPDEIVIAMV----TGRL 69 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh---ccCCH----HHHHHHHHHhCCCCCcHHHHHHHH----HHHH
Confidence 378999999999999999886433333333222210 11111 112344444555544332211100 0011
Q ss_pred HHHHhcCCeEEEEeeHHHHHHHH---HhCCC-cEEEEEeCCCHHHHHHHHHHc---------------------------
Q psy11425 211 VREIKSNVDILLEIDFQGAKQIK---KKFPN-AIGIFILPPSLDSLKERLYKR--------------------------- 259 (672)
Q Consensus 211 ~~~l~~G~~vIldi~~~g~~~l~---~~~~~-~~vIfI~~ps~e~l~~RL~~R--------------------------- 259 (672)
..........|+|+-|..+.+.. +.... ..+|+++.+ .+++.+|+..|
T Consensus 70 ~~~~~~~~G~ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvp-devlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~ 148 (505)
T PLN02842 70 SREDAKEKGWLLDGYPRSFAQAQSLEKLKIRPDIFILLDVP-DEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLI 148 (505)
T ss_pred hCccccCCcEEEeCCCCcHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHhccccccccCCccccccCCCCccccccccc
Confidence 00000112366687655444332 32222 346777765 78888887755
Q ss_pred --CCCCHHHHHHHHHHHHHHh----hhcCCCcEEEEcC--CHHHHHHHHHHHHHhcccc---cc-----------cccch
Q psy11425 260 --GQDKYDVISRRILSANKEI----SYANKFDYIIINN--KFSKALLQLKAIINANRCF---MA-----------RVTIE 317 (672)
Q Consensus 260 --g~~~~e~i~~rl~~~~~e~----~~~~~~D~VI~Nd--dle~a~~qL~~iI~~~~~~---m~-----------r~~~~ 317 (672)
.+++++.+++|+..+.... .+... -++.+|. +.++.+++|.++|...... |. +..+-
T Consensus 149 ~R~DD~eE~IkkRL~~Y~~~t~pIl~~Y~~-rl~~IDAsqs~EeVfeeI~~iL~~~L~~~~~~~~~~~~~~~~~~~~~~~ 227 (505)
T PLN02842 149 TRPDDTEEKVKARLQIYKKNAEAILSTYSD-IMVKIDGNRPKEVVFEEISSLLSQIQKDATKMIKTKKASPVQDKWRGIP 227 (505)
T ss_pred cCCCCCHHHHHHHHHHHHHHhhhHHHhcCc-EEEEEECCCCHHHHHHHHHHHHHHHHhhhhhhcccccccchhhhhccCc
Confidence 2456788999998876543 22221 1344444 4899999998888654222 11 11233
Q ss_pred hhhhhhh-cc------hhHHHHHHHHhhhhhcCCCcccccccCCCcchhhhhhhcC-cCccc-cchHHHHHHHHHHHHHH
Q psy11425 318 DGLKKIN-NR------FKLTLCAVYRARQLLKGHTKKIIGCDNDKVTVIALREISH-GKIGV-EIRLAIWQAEYVRKKII 388 (672)
Q Consensus 318 ~~~~~~~-~~------y~l~~~~~~~a~~~~~~~~~~~~~~~~~k~~~~a~~~~~~-~~v~r-~S~LAl~Q~~~v~~~l~ 388 (672)
-.|+.|. || |.-+.-|.++| +.+|..-+ -+.+.+=|++- +.|-| |-.|.|++ .+...|.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~a~~~a--~~~g~~r~--------~~~~~~pel~~~~~~~~~~~~~~l~~--~~~~~~~ 295 (505)
T PLN02842 228 TRLNNIPHSREIRAYFYDDVLQATQRA--VNDGRTRL--------KVEINIPELNPEMDVYRIGTLMELVR--VLALSFA 295 (505)
T ss_pred hhhcCCCChHHHHHHHHHHHHHHHHHH--HhCCcceE--------EEEEecCccccccccccchhHHHHHH--HHHHHHh
Confidence 3444443 34 33556666666 34554333 23334445442 34443 55556544 3444554
Q ss_pred hhCCCceEEEEeeccCCccc-cCCcccccC
Q psy11425 389 ELYPWCKVEILGITTKGDKI-FEKVPLKIN 417 (672)
Q Consensus 389 ~~~p~~~~e~~~i~t~GD~~-~~~~l~~~g 417 (672)
+. +..+.+..-.+.|--. +..||+--|
T Consensus 296 ~~--~~~~kv~~~~~~g~~~~~~~~~~~~~ 323 (505)
T PLN02842 296 DD--GKRVKVCVQGSMGEGALAGMPLQLAG 323 (505)
T ss_pred hc--CCceEEEecCCcchhHhccCcccccc
Confidence 43 4456666666566333 344554433
No 158
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.01 E-value=1.3e-05 Score=94.04 Aligned_cols=160 Identities=11% Similarity=0.037 Sum_probs=84.2
Q ss_pred cccccceEEEEeCCCCCChHHHHHHHHhcC----CCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHh
Q psy11425 122 SFKSFGNIFIISAPSGAGKSTLVNELLKKD----HKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAE 197 (672)
Q Consensus 122 ~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~----~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~ 197 (672)
.+.+++++|+++|.|||||||+++.|.+.. ....+...+..|+.-. .+..|. ++.-.
T Consensus 455 ~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~---~~~~~~---~~~r~------------- 515 (632)
T PRK05506 455 RKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLN---RDLGFS---DADRV------------- 515 (632)
T ss_pred HhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccC---CCCCCC---HHHHH-------------
Confidence 445568999999999999999999998773 1223333333333211 111111 11100
Q ss_pred HhccccCcchHHHHHHHhcCCeEEEEeeH--HHH-HHHHHhCC--CcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHH
Q psy11425 198 VHGNFYGTSFFPIVREIKSNVDILLEIDF--QGA-KQIKKKFP--NAIGIFILPPSLDSLKERLYKRGQDKYDVISRRIL 272 (672)
Q Consensus 198 ~~g~~YGt~~~~I~~~l~~G~~vIldi~~--~g~-~~l~~~~~--~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~ 272 (672)
..|...........+.|.+++++... ... ..++.... ...+||+.+| .+.+.+|. .|+-..... ...+.
T Consensus 516 ---~~~~~l~~~a~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~-~e~~~~R~-~r~L~~~~~-~~~l~ 589 (632)
T PRK05506 516 ---ENIRRVAEVARLMADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTP-LEVCEARD-PKGLYAKAR-AGEIK 589 (632)
T ss_pred ---HHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCC-HHHHHhhC-Ccchhhhcc-ccccc
Confidence 01111122233445678888888642 122 22232222 2467888876 88888883 232110000 01111
Q ss_pred HH-HHHhhhc--CCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 273 SA-NKEISYA--NKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 273 ~~-~~e~~~~--~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
.. .....|. ..+|++|.++ +++++..++.+.+..
T Consensus 590 ~l~~~r~~y~~P~~a~~~Id~~~~s~~e~v~~Ii~~l~~ 628 (632)
T PRK05506 590 NFTGIDSPYEAPENPELRLDTTGRSPEELAEQVLELLRR 628 (632)
T ss_pred cccccccCCCCCCCCeEEEeCCCCCHHHHHHHHHHHHHH
Confidence 10 1112343 4578899875 489999999888854
No 159
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.00 E-value=2.4e-05 Score=82.11 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=73.9
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcch
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSF 207 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~ 207 (672)
++|+|+|.|||||||+++.|.+.+.. .+...+.++.+.+. +..+.|... ......-|..+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~-----------------~~~~v~~i~~~~~~--~~~~~y~~~-~~Ek~~R~~l~ 61 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE-----------------KGKEVVIISDDSLG--IDRNDYADS-KKEKEARGSLK 61 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH-----------------TT--EEEE-THHHH---TTSSS--G-GGHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh-----------------cCCEEEEEcccccc--cchhhhhch-hhhHHHHHHHH
Confidence 58999999999999999999886421 01111222222222 111112111 00111112234
Q ss_pred HHHHHHHhcCCeEEEEee-------HHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCC---CHHHHHHHHHHHHHH
Q psy11425 208 FPIVREIKSNVDILLEID-------FQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQD---KYDVISRRILSANKE 277 (672)
Q Consensus 208 ~~I~~~l~~G~~vIldi~-------~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~---~~e~i~~rl~~~~~e 277 (672)
..+.+.+.+..+||+|.. ++.+...+...-...+||+.+| .+...+|=..|+.. +++.+.....+.+.-
T Consensus 62 s~v~r~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~-~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P 140 (270)
T PF08433_consen 62 SAVERALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCP-LETCLQRNSKRPEPERYPEETIDDMIQRFEEP 140 (270)
T ss_dssp HHHHHHHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHTT-S--S-HHHHHHHHHH---T
T ss_pred HHHHHhhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCC-HHHHHHhhhccCCCCCCCHHHHHHHHHHhcCC
Confidence 566677777888888842 2333333444445668999987 89999998888643 445555554443321
Q ss_pred h--hhcCCCcEEEEcCCHHHHHHHHHHHH
Q psy11425 278 I--SYANKFDYIIINNKFSKALLQLKAII 304 (672)
Q Consensus 278 ~--~~~~~~D~VI~Nddle~a~~qL~~iI 304 (672)
. ..+...-++|.+++.+..+.+|...|
T Consensus 141 ~~~nrWD~plf~i~~~~~~~~~~~I~~~l 169 (270)
T PF08433_consen 141 DPKNRWDSPLFTIDSSDEELPLEEIWNAL 169 (270)
T ss_dssp TSS-GGGS-SEEEE-TTS---HHHHHHHH
T ss_pred CCCCCccCCeEEEecCCCCCCHHHHHHHH
Confidence 1 23455778888544333334444444
No 160
>KOG3354|consensus
Probab=97.99 E-value=9.4e-05 Score=70.20 Aligned_cols=154 Identities=15% Similarity=0.203 Sum_probs=83.8
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCccccc-CCHHHHHHHHHcCCchhHHhHhccccCcc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYF-TNIDNFKKLQKSGKFLEWAEVHGNFYGTS 206 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~f-vs~~~F~~~i~~g~fle~~~~~g~~YGt~ 206 (672)
-+|+++|+|||||||+.+.|.+... +.| .+|.|||- .+.+.|.+.+.-+.--.|.-... .
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~-~~F-------------~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~-----i 73 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELG-LKF-------------IDGDDLHPPANVEKMTQGIPLNDDDRWPWLKK-----I 73 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhC-Ccc-------------cccccCCCHHHHHHHhcCCCCCcccccHHHHH-----H
Confidence 4899999999999999999988852 222 34667663 23333333332222111211110 0
Q ss_pred hHHHHHHHhcCCeEEEEeeH--HHHHHHHHh---------CC--CcEEEEEeCCCHHHHHHHHHHcCC-CCHHHHHHHHH
Q psy11425 207 FFPIVREIKSNVDILLEIDF--QGAKQIKKK---------FP--NAIGIFILPPSLDSLKERLYKRGQ-DKYDVISRRIL 272 (672)
Q Consensus 207 ~~~I~~~l~~G~~vIldi~~--~g~~~l~~~---------~~--~~~vIfI~~ps~e~l~~RL~~Rg~-~~~e~i~~rl~ 272 (672)
.......+..|.-+|+-++. ..++.+... .+ ...+||+.. |.+++.+|+..|.. .=+ ...++
T Consensus 74 ~~~~~~~l~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~-s~evi~~Rl~~R~gHFMp---~~lle 149 (191)
T KOG3354|consen 74 AVELRKALASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSA-SFEVILKRLKKRKGHFMP---ADLLE 149 (191)
T ss_pred HHHHHHHhhcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeec-cHHHHHHHHhhcccccCC---HHHHH
Confidence 11233445577888877643 233333332 11 134677765 79999999999954 111 12344
Q ss_pred HHHHHhhhc--CCCcEE---EEcCCHHHHHHHHHHHH
Q psy11425 273 SANKEISYA--NKFDYI---IINNKFSKALLQLKAII 304 (672)
Q Consensus 273 ~~~~e~~~~--~~~D~V---I~Nddle~a~~qL~~iI 304 (672)
+|...++.. ..-|+| +.|-+.++.+..|.+.+
T Consensus 150 SQf~~LE~p~~~e~div~isv~~~~~e~iv~tI~k~~ 186 (191)
T KOG3354|consen 150 SQFATLEAPDADEEDIVTISVKTYSVEEIVDTIVKMV 186 (191)
T ss_pred HHHHhccCCCCCccceEEEeeccCCHHHHHHHHHHHH
Confidence 554444332 222333 33346788777776544
No 161
>PRK06761 hypothetical protein; Provisional
Probab=97.98 E-value=0.00038 Score=73.44 Aligned_cols=120 Identities=17% Similarity=0.127 Sum_probs=68.8
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeeccccc--ccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhcccc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTT--RPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFY 203 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TT--R~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~Y 203 (672)
|+++|+|+|+|||||||+++.|.+.....++.+..++ ..+++.+..+..+ .+.++|...+.....+.
T Consensus 2 m~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~--~~~eer~~~l~~~~~f~--------- 70 (282)
T PRK06761 2 MTKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVAC--FTKEEFDRLLSNYPDFK--------- 70 (282)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccC--CCHHHHHHHHHhhhHHH---------
Confidence 4679999999999999999999988643222332222 2335556666544 38888888875443222
Q ss_pred CcchHHHHHHHhcCCeEEEEee--HHHHHH-HHH-hCCCcEEEEEeCCCHHHHHHHHHHc
Q psy11425 204 GTSFFPIVREIKSNVDILLEID--FQGAKQ-IKK-KFPNAIGIFILPPSLDSLKERLYKR 259 (672)
Q Consensus 204 Gt~~~~I~~~l~~G~~vIldi~--~~g~~~-l~~-~~~~~~vIfI~~ps~e~l~~RL~~R 259 (672)
...+...+..|..+|+-.. ...++. +.. .+....+-++...|++.+.+|+..|
T Consensus 71 ---~~l~~~~~~~g~~~i~~~~~l~~~yr~~~~~~~~~~~~v~~~h~~p~e~i~~R~~~r 127 (282)
T PRK06761 71 ---EVLLKNVLKKGDYYLLPYRKIKNEFGDQFSDELFNDISKNDIYELPFDKNTELITDR 127 (282)
T ss_pred ---HHHHHHHHHcCCeEEEEehhhhHHHhhhhhhhhcccceeeeeecCCHHHHHHHHHHH
Confidence 1233445566666554331 111111 111 0111223445466799999998776
No 162
>PLN02840 tRNA dimethylallyltransferase
Probab=97.96 E-value=8.6e-06 Score=89.80 Aligned_cols=94 Identities=17% Similarity=0.138 Sum_probs=66.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC---------CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhH
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH---------KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEW 195 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~---------~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~ 195 (672)
.++++|+|+||+|||||||+..|.+... .++.....+|.+|...|..|+.||+++--........+.|.
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~-- 96 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFF-- 96 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHH--
Confidence 4567999999999999999999999863 23445567899999999999999987544333222222222
Q ss_pred HhHhccccCcchHHHHHHHhcCCeEEEEeeHHH
Q psy11425 196 AEVHGNFYGTSFFPIVREIKSNVDILLEIDFQG 228 (672)
Q Consensus 196 ~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g 228 (672)
......+..+.+.|++.|+.+-.-.
T Consensus 97 --------~~A~~~I~~i~~rgkiPIvVGGTGl 121 (421)
T PLN02840 97 --------DDARRATQDILNRGRVPIVAGGTGL 121 (421)
T ss_pred --------HHHHHHHHHHHhcCCCEEEEcCccH
Confidence 2235567777788998777764433
No 163
>PRK07261 topology modulation protein; Provisional
Probab=97.93 E-value=6.7e-05 Score=73.39 Aligned_cols=97 Identities=18% Similarity=0.098 Sum_probs=54.1
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchH
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFF 208 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~ 208 (672)
.|+|+|+|||||||+++.|.+.+. +.....+..+- ...+.-.+.++|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~-~~~i~~D~~~~-------~~~~~~~~~~~~~~----------------------- 50 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN-CPVLHLDTLHF-------QPNWQERDDDDMIA----------------------- 50 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC-CCeEecCCEEe-------ccccccCCHHHHHH-----------------------
Confidence 489999999999999999987642 11111111100 00011112222222
Q ss_pred HHHHHHhcCCeEEEEeeHHHHH-HHHHhCCCcEEEEEeCCCHHHHHHHHHHc
Q psy11425 209 PIVREIKSNVDILLEIDFQGAK-QIKKKFPNAIGIFILPPSLDSLKERLYKR 259 (672)
Q Consensus 209 ~I~~~l~~G~~vIldi~~~g~~-~l~~~~~~~~vIfI~~ps~e~l~~RL~~R 259 (672)
.+...+..+. .|+|+++.... ...-.. -..+||++.| ..+...|+.+|
T Consensus 51 ~~~~~~~~~~-wIidg~~~~~~~~~~l~~-ad~vI~Ld~p-~~~~~~R~lkR 99 (171)
T PRK07261 51 DISNFLLKHD-WIIDGNYSWCLYEERMQE-ADQIIFLNFS-RFNCLYRAFKR 99 (171)
T ss_pred HHHHHHhCCC-EEEcCcchhhhHHHHHHH-CCEEEEEcCC-HHHHHHHHHHH
Confidence 2334455555 88898876632 222222 3456889877 77777777665
No 164
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.88 E-value=0.00034 Score=68.07 Aligned_cols=155 Identities=15% Similarity=0.246 Sum_probs=81.2
Q ss_pred cccccceEEEEeCCCCCChHHHHHHHHhcCC--Cce--eecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHh
Q psy11425 122 SFKSFGNIFIISAPSGAGKSTLVNELLKKDH--KIK--LSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAE 197 (672)
Q Consensus 122 ~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~--~~~--~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~ 197 (672)
.....+.+|=+||.||||||||++.|.++.. +++ ....+.-|. +- +.++-|...+.-+...+
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~---gL--~~dLgFs~edR~eniRR--------- 83 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRH---GL--NRDLGFSREDRIENIRR--------- 83 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhh---cc--cCCCCCChHHHHHHHHH---------
Confidence 3445678999999999999999999877652 222 222111111 00 12333332222111111
Q ss_pred HhccccCcchHHH-HHHHhcCCeEEEE-eeH--HHHHHHHHhCC--CcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHH
Q psy11425 198 VHGNFYGTSFFPI-VREIKSNVDILLE-IDF--QGAKQIKKKFP--NAIGIFILPPSLDSLKERLYKRGQDKYDVISRRI 271 (672)
Q Consensus 198 ~~g~~YGt~~~~I-~~~l~~G~~vIld-i~~--~g~~~l~~~~~--~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl 271 (672)
...+ +...+.|-++|+- ++| ..-+..++... ..+-|||.+| .++.++|- +.-+.++-
T Consensus 84 ---------vaevAkll~daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~p-l~vce~RD-------pKGLYkKA 146 (197)
T COG0529 84 ---------VAEVAKLLADAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTP-LEVCERRD-------PKGLYKKA 146 (197)
T ss_pred ---------HHHHHHHHHHCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCC-HHHHHhcC-------chHHHHHH
Confidence 1122 2334457766654 333 22233444444 3677999988 88876652 22222221
Q ss_pred HHHH-H-----Hhhh--cCCCcEEEEcC--CHHHHHHHHHHHHHhc
Q psy11425 272 LSAN-K-----EISY--ANKFDYIIINN--KFSKALLQLKAIINAN 307 (672)
Q Consensus 272 ~~~~-~-----e~~~--~~~~D~VI~Nd--dle~a~~qL~~iI~~~ 307 (672)
..-. . +..| ....|++|..+ ++++...+|..++...
T Consensus 147 r~GeI~~fTGid~pYE~P~~Pel~l~t~~~~vee~v~~i~~~l~~~ 192 (197)
T COG0529 147 RAGEIKNFTGIDSPYEAPENPELHLDTDRNSVEECVEQILDLLKER 192 (197)
T ss_pred HcCCCCCCcCCCCCCCCCCCCeeEeccccCCHHHHHHHHHHHHHhc
Confidence 1111 1 1122 33466776644 5899999999888654
No 165
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.88 E-value=7.2e-06 Score=74.85 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=20.6
Q ss_pred EEEeCCCCCChHHHHHHHHhcC
Q psy11425 130 FIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 130 IvLtGpsGSGKSTLa~~L~e~~ 151 (672)
|+|+|+||||||||++.|.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999984
No 166
>COG4639 Predicted kinase [General function prediction only]
Probab=97.88 E-value=0.00021 Score=68.04 Aligned_cols=142 Identities=18% Similarity=0.255 Sum_probs=74.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCc-hhHHhHhccccC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKF-LEWAEVHGNFYG 204 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~f-le~~~~~g~~YG 204 (672)
|..+++|+|+|||||||+++......+ ..... .+|.-. |+. +......+.- .-| .
T Consensus 1 ~~~LvvL~G~~~sGKsT~ak~n~~~~~--~lsld-~~r~~l-g~~------------~~~e~sqk~~~~~~----~---- 56 (168)
T COG4639 1 MRILVVLRGASGSGKSTFAKENFLQNY--VLSLD-DLRLLL-GVS------------ASKENSQKNDELVW----D---- 56 (168)
T ss_pred CceEEEEecCCCCchhHHHHHhCCCcc--eecHH-HHHHHh-hhc------------hhhhhccccHHHHH----H----
Confidence 457899999999999999987644432 11211 122111 000 0000000100 011 0
Q ss_pred cchHHHHHHHhcCCeEEEEeeH---HH---HHHHHHhC-CCcEEEEEeCCCHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Q psy11425 205 TSFFPIVREIKSNVDILLEIDF---QG---AKQIKKKF-PNAIGIFILPPSLDSLKERLYKRGQD-KYDVISRRILSANK 276 (672)
Q Consensus 205 t~~~~I~~~l~~G~~vIldi~~---~g---~~~l~~~~-~~~~vIfI~~ps~e~l~~RL~~Rg~~-~~e~i~~rl~~~~~ 276 (672)
......+..+..|+..|+|.+- .- +..+-+.+ ...++|+++.| .+.+.+|-..|.+. ..+.|.+.+ +.-.
T Consensus 57 ~l~~~l~qrl~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp-~~~c~aRNk~~~Rqv~~~VI~r~~-r~~~ 134 (168)
T COG4639 57 ILYKQLEQRLRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTP-LELCLARNKLRERQVPEEVIPRML-RETI 134 (168)
T ss_pred HHHHHHHHHHHcCCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCC-HHHHHHHhhccchhCCHHHHHHHH-HHHH
Confidence 1112345567789999999643 33 33333444 35667777777 88888886655443 445554444 3323
Q ss_pred HhhhcCCCcEEEEcCCH
Q psy11425 277 EISYANKFDYIIINNKF 293 (672)
Q Consensus 277 e~~~~~~~D~VI~Nddl 293 (672)
...-...+-++..+.+.
T Consensus 135 ~~l~~e~~~~~~~~~s~ 151 (168)
T COG4639 135 DLLEKEPFRYVWTLSSP 151 (168)
T ss_pred hhccCCCeEEEEecCCH
Confidence 33334566677766653
No 167
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.84 E-value=6.1e-05 Score=75.34 Aligned_cols=120 Identities=21% Similarity=0.223 Sum_probs=59.8
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC--CCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD--HKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNF 202 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~--~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~ 202 (672)
..|.++++.|+|||||||++..+...+ ..+....++.-|..-+. -.++... ....+.........
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~-----------~~~~~~~-~~~~~~~~~~~~a~- 79 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPD-----------YDELLKA-DPDEASELTQKEAS- 79 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTT-----------HHHHHHH-HCCCTHHHHHHHHH-
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccc-----------hhhhhhh-hhhhhHHHHHHHHH-
Confidence 567899999999999999999998875 44444444444332211 1111111 11111111111100
Q ss_pred cCcchHHHHHHHhcCCeEEEEeeH---HHH----HHHHHhCCCcEEEEEeCCCHHHHHHHHHHc
Q psy11425 203 YGTSFFPIVREIKSNVDILLEIDF---QGA----KQIKKKFPNAIGIFILPPSLDSLKERLYKR 259 (672)
Q Consensus 203 YGt~~~~I~~~l~~G~~vIldi~~---~g~----~~l~~~~~~~~vIfI~~ps~e~l~~RL~~R 259 (672)
-.....+...+..+.+++++..+ ..+ +.+++......++||..| ++.-..|...|
T Consensus 80 -~~~~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~-~e~s~~rv~~R 141 (199)
T PF06414_consen 80 -RLAEKLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVP-PELSIERVRQR 141 (199)
T ss_dssp -HHHHHHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE----HHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECC-HHHHHHHHHHH
Confidence 01122455667889999999744 222 344444455666777665 78888888776
No 168
>KOG3347|consensus
Probab=97.82 E-value=0.00022 Score=67.46 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=25.7
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeeccccc
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTT 162 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TT 162 (672)
-|.|||.||+||||++..|.+...--++.++...
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~isd~v 42 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEISDLV 42 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEehhhHH
Confidence 4889999999999999999988532334454443
No 169
>PRK00098 GTPase RsgA; Reviewed
Probab=97.81 E-value=1.7e-05 Score=84.48 Aligned_cols=93 Identities=14% Similarity=0.086 Sum_probs=64.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCC-Cceeec------ccccccCCCCCCC------------CcccccCCHHHHHHHH
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDH-KIKLSI------STTTRPMRPGEKN------------GREYYFTNIDNFKKLQ 187 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v------~~TTR~~r~~E~~------------G~dY~fvs~~~F~~~i 187 (672)
+++++|+|+||+|||||.+.|..... ..+... .||||..+..+.+ +.+|++.+++++...+
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~f 243 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEHYF 243 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHHHH
Confidence 57899999999999999999976542 222111 3788876665444 4557778888877764
Q ss_pred Hc-CCchhHHhHhc-cccCcchHHHHHHHhcCCe
Q psy11425 188 KS-GKFLEWAEVHG-NFYGTSFFPIVREIKSNVD 219 (672)
Q Consensus 188 ~~-g~fle~~~~~g-~~YGt~~~~I~~~l~~G~~ 219 (672)
.. ..+..+..+++ .+|+.+...+...+++|.+
T Consensus 244 ~~~~~~~~~c~f~~c~h~~ep~c~v~~a~~~g~i 277 (298)
T PRK00098 244 PEFRPLSGDCKFRNCTHLHEPGCAVKAAVEEGEI 277 (298)
T ss_pred HHHHHHhCCCCCCCCcCCCCCCChHHHHHHcCCC
Confidence 32 22233333444 6799999999999998874
No 170
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.79 E-value=5.7e-05 Score=71.97 Aligned_cols=127 Identities=20% Similarity=0.243 Sum_probs=73.6
Q ss_pred EeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchHHHH
Q psy11425 132 ISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIV 211 (672)
Q Consensus 132 LtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~~I~ 211 (672)
|.|||||||||+++.|.+.+.-.+.++...-|..-.. +. ..-..+...+.+|..+...-. ..-+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~---~s----~~g~~i~~~l~~g~~vp~~~v--------~~ll~ 65 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKS---DS----ELGKQIQEYLDNGELVPDELV--------IELLK 65 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHT---TS----HHHHHHHHHHHTTSS--HHHH--------HHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhh---hh----HHHHHHHHHHHhhccchHHHH--------HHHHH
Confidence 6899999999999999998744444544433321100 00 012345556666776543111 11222
Q ss_pred HHHh---cCCeEEEEeeHHHHHHHH---H----hCCCc-EEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q psy11425 212 REIK---SNVDILLEIDFQGAKQIK---K----KFPNA-IGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKE 277 (672)
Q Consensus 212 ~~l~---~G~~vIldi~~~g~~~l~---~----~~~~~-~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e 277 (672)
..+. .....|+|+-|....++. . ....+ .+|++..| .+.+.+|+.. ++.+.+++|+..+...
T Consensus 66 ~~l~~~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~-~~~~~~R~~~---d~~~~i~~Rl~~y~~~ 138 (151)
T PF00406_consen 66 ERLEQPPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCP-DETLIERLSQ---DNEEVIKKRLEEYREN 138 (151)
T ss_dssp HHHHSGGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE---HHHHHHHHHT---GSHHHHHHHHHHHHHH
T ss_pred HHHhhhcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccc-hhhhhhhccc---CCHHHHHHHHHHHHHH
Confidence 2222 246688998775554433 3 22333 56777765 8999999887 6778899999886543
No 171
>PLN02165 adenylate isopentenyltransferase
Probab=97.79 E-value=5.4e-05 Score=81.20 Aligned_cols=126 Identities=16% Similarity=0.091 Sum_probs=66.7
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhcCCC---------ceeecccccccCCCCCCCCcccccCCHHHHHH-HHHcCCc
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKKDHK---------IKLSISTTTRPMRPGEKNGREYYFTNIDNFKK-LQKSGKF 192 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~---------~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~-~i~~g~f 192 (672)
.+.++++|+|+||+|||||||+..|.+.... ++.-....|-+|-..+..|..||+++.-.-.. .+..+.|
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F 118 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEF 118 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHH
Confidence 3455779999999999999999999888531 11111223444444455666655432100000 0000011
Q ss_pred hhHHhHhccccCcchHHHHHHHhcCCeEEEEeeHH-HHHHHHHh-------------------C-CCcEEEEEeCCCHHH
Q psy11425 193 LEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQ-GAKQIKKK-------------------F-PNAIGIFILPPSLDS 251 (672)
Q Consensus 193 le~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~-g~~~l~~~-------------------~-~~~~vIfI~~ps~e~ 251 (672)
.. .....+..+...|+..|+.+-.- .++.+... . .+..++++. ++.++
T Consensus 119 ~~----------~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~-~dr~~ 187 (334)
T PLN02165 119 RS----------LASLSISEITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVD-VSEPV 187 (334)
T ss_pred HH----------HHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEEC-CCHHH
Confidence 11 11234445556677777665332 22333221 0 123445555 45899
Q ss_pred HHHHHHHc
Q psy11425 252 LKERLYKR 259 (672)
Q Consensus 252 l~~RL~~R 259 (672)
+.+|+..|
T Consensus 188 L~~RI~~R 195 (334)
T PLN02165 188 LFEYLSKR 195 (334)
T ss_pred HHHHHHHH
Confidence 99999888
No 172
>COG0645 Predicted kinase [General function prediction only]
Probab=97.77 E-value=0.00044 Score=66.88 Aligned_cols=112 Identities=22% Similarity=0.226 Sum_probs=63.7
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCC---C---CCCcccccCCHHHHHHHHHcCCchhHHhHhcc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPG---E---KNGREYYFTNIDNFKKLQKSGKFLEWAEVHGN 201 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~---E---~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~ 201 (672)
+++++.|.|||||||++..|.+..+... .-++..|+.-.+ + ..|..+.-++..
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~-lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~-------------------- 60 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIR-LRSDVIRKRLFGVPEETRGPAGLYSPAATAA-------------------- 60 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceE-EehHHHHHHhcCCcccccCCCCCCcHHHHHH--------------------
Confidence 5788999999999999999999864332 223333332111 0 011111111111
Q ss_pred ccCcchHHHHHHHhcCCeEEEEeeHH------HHHHHHHhCCCcEE-EEEeCCCHHHHHHHHHHcCC
Q psy11425 202 FYGTSFFPIVREIKSNVDILLEIDFQ------GAKQIKKKFPNAIG-IFILPPSLDSLKERLYKRGQ 261 (672)
Q Consensus 202 ~YGt~~~~I~~~l~~G~~vIldi~~~------g~~~l~~~~~~~~v-IfI~~ps~e~l~~RL~~Rg~ 261 (672)
.|..........+..|..||+|..+. .+..+-....-++. |.+.+| .+++..|+..|..
T Consensus 61 vy~~l~~~A~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap-~~v~~~rl~aR~~ 126 (170)
T COG0645 61 VYDELLGRAELLLSSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAP-EEVLRGRLAARKG 126 (170)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCc-HHHHHHHHHHhCC
Confidence 12222334457788999999997442 22222222222344 444554 9999999999976
No 173
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.75 E-value=0.0002 Score=81.67 Aligned_cols=98 Identities=15% Similarity=0.140 Sum_probs=63.2
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhcccc
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFY 203 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~Y 203 (672)
+.++.+|+++|+|||||||+++.+.... ++. .++.+.+.. |.
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~-g~~---------------------~vn~D~lg~---------~~------- 407 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPA-GYK---------------------HVNADTLGS---------TQ------- 407 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHc-CCe---------------------EECcHHHHH---------HH-------
Confidence 3567899999999999999999987753 221 122232211 10
Q ss_pred CcchHHHHHHHhcCCeEEEEeeH------HHHHHHHHhCC-CcEEEEEeCCCHHHHHHHHHHcCC
Q psy11425 204 GTSFFPIVREIKSNVDILLEIDF------QGAKQIKKKFP-NAIGIFILPPSLDSLKERLYKRGQ 261 (672)
Q Consensus 204 Gt~~~~I~~~l~~G~~vIldi~~------~g~~~l~~~~~-~~~vIfI~~ps~e~l~~RL~~Rg~ 261 (672)
.-...+...+..|+.||+|-+. ..+..+.+... ....|++.+| .+++++|+..|..
T Consensus 408 -~~~~~a~~~L~~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p-~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 408 -NCLTACERALDQGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAP-LAQAKHNIAFREL 470 (526)
T ss_pred -HHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCC-HHHHHHHHHhhcc
Confidence 0123466788899999999632 33344444444 3445555654 9999999998854
No 174
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.75 E-value=0.00043 Score=79.80 Aligned_cols=157 Identities=11% Similarity=0.075 Sum_probs=81.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCC-CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYG 204 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YG 204 (672)
..+.|+|+|++||||||+.+.|.+... .|........+ +. | .+-.++ |-++++..-. -
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~--~~----g-----~si~ei--------f~~~Ge~~FR--~ 63 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIER--EI----G-----MSIPSY--------FEEYGEPAFR--E 63 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHH--HH----C-----cCHHHH--------HHHHHHHHHH--H
Confidence 456899999999999999999988751 22222111110 00 1 111111 1111111100 0
Q ss_pred cchHHHHHHHhcCCeEEEE-----eeHHHHHHHHHhCC-CcEEEEEeCCCHHHHHHHHHHcCC---C---CHHHHHHHHH
Q psy11425 205 TSFFPIVREIKSNVDILLE-----IDFQGAKQIKKKFP-NAIGIFILPPSLDSLKERLYKRGQ---D---KYDVISRRIL 272 (672)
Q Consensus 205 t~~~~I~~~l~~G~~vIld-----i~~~g~~~l~~~~~-~~~vIfI~~ps~e~l~~RL~~Rg~---~---~~e~i~~rl~ 272 (672)
.-.+.+...+.....||-- .+++....+.+... .-.+||+..+ ++.+.+|+..+.. . +.+.+...+
T Consensus 64 ~E~~~l~~~~~~~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~-~~~l~~Rl~~~~~RPll~~~~~~~~~~l~- 141 (542)
T PRK14021 64 VEADVVADMLEDFDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDAD-PKEAMERANRGGGRPMLNGDANKRWKKLF- 141 (542)
T ss_pred HHHHHHHHHHhcCCeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECC-HHHHHHHHhCCCCCCCCCCCcHHHHHHHH-
Confidence 0012233333333333311 23444443432211 2367999976 9999999874321 1 112222211
Q ss_pred HHHHHhhhcCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 273 SANKEISYANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 273 ~~~~e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
..++--|.+.+|++|.++ +++++..++.+.+..
T Consensus 142 -~~R~~~Y~~~Ad~~i~~~~~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 142 -KQRDPVFRQVANVHVHTRGLTPQAAAKKLIDMVAE 176 (542)
T ss_pred -HHHHHHHHhhCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 223445667899999876 489999999888864
No 175
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.75 E-value=0.00015 Score=69.79 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=56.0
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC----CCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD----HKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNF 202 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~----~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~ 202 (672)
+.+|.|||.||||||||++.|.+.. ....+.....-|.- --.+..|...++.+.-+.+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~---l~~dl~fs~~dR~e~~rr~--------------- 63 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG---LNADLGFSKEDREENIRRI--------------- 63 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT---TTTT--SSHHHHHHHHHHH---------------
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc---cCCCCCCCHHHHHHHHHHH---------------
Confidence 5789999999999999999987764 33333333333321 0001111111222211111
Q ss_pred cCcchHHHHHHHhcCCeEEEEee-H--HHHHHHHHhCC--CcEEEEEeCCCHHHHHHH
Q psy11425 203 YGTSFFPIVREIKSNVDILLEID-F--QGAKQIKKKFP--NAIGIFILPPSLDSLKER 255 (672)
Q Consensus 203 YGt~~~~I~~~l~~G~~vIldi~-~--~g~~~l~~~~~--~~~vIfI~~ps~e~l~~R 255 (672)
.+......++|.+||+... | +.-..+++..+ ..+-|||.+| .+++++|
T Consensus 64 ----~~~A~ll~~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~-~e~~~~R 116 (156)
T PF01583_consen 64 ----AEVAKLLADQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCP-LEVCRKR 116 (156)
T ss_dssp ----HHHHHHHHHTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES--HHHHHHH
T ss_pred ----HHHHHHHHhCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCC-HHHHHHh
Confidence 1122344567888877642 2 22233444444 3678999987 8888887
No 176
>PLN02199 shikimate kinase
Probab=97.70 E-value=0.0013 Score=69.57 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=23.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+++.|+|+|++||||||+.+.|.+..
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~L 126 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVL 126 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998864
No 177
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.67 E-value=0.00067 Score=68.11 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=23.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+|.|=||+||||||+++.|.+++
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~L 28 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKL 28 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHh
Confidence 3789999999999999999999986
No 178
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=97.66 E-value=0.00089 Score=70.17 Aligned_cols=140 Identities=16% Similarity=0.207 Sum_probs=78.3
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcch
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSF 207 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~ 207 (672)
++|+|||.|||||||.++.|.+.++ +++... | +.-+.+ |++.....+..+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~lED~Gy---~cvDNl--P---------------~~Ll~~------l~~~~~~~~~~~---- 51 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRALEDLGY---YCVDNL--P---------------PSLLPQ------LIELLAQSNSKI---- 51 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHHHhcCe---eEEcCC--c---------------HHHHHH------HHHHHHhcCCCC----
Confidence 6899999999999999999998862 343211 1 111111 222211000000
Q ss_pred HHHHHHHhcCCeEEEEeeH--------HHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCC----HHHHHHHHHHHH
Q psy11425 208 FPIVREIKSNVDILLEIDF--------QGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDK----YDVISRRILSAN 275 (672)
Q Consensus 208 ~~I~~~l~~G~~vIldi~~--------~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~----~e~i~~rl~~~~ 275 (672)
+.-.+++|+-. +.+..+++......+||+++. .+++.+|-..-.+.- ...+..-++...
T Consensus 52 --------~~~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~-d~~LirRy~eTRR~HPL~~~~~~le~I~~Er 122 (284)
T PF03668_consen 52 --------EKVAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDAS-DEVLIRRYSETRRRHPLSSDGSLLEAIEKER 122 (284)
T ss_pred --------ceEEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECC-hHHHHHHHHhccCCCCCCCCCCcHHHHHHHH
Confidence 01124455411 233445556667889999976 889999988421110 001111133322
Q ss_pred HH-hhhcCCCcEEEEcCC--HHHHHHHHHHHHHh
Q psy11425 276 KE-ISYANKFDYIIINNK--FSKALLQLKAIINA 306 (672)
Q Consensus 276 ~e-~~~~~~~D~VI~Ndd--le~a~~qL~~iI~~ 306 (672)
.. ......+|+||...+ ..+...+|.+++..
T Consensus 123 ~~L~~lr~~Ad~vIDTs~l~~~~Lr~~i~~~~~~ 156 (284)
T PF03668_consen 123 ELLEPLRERADLVIDTSNLSVHQLRERIRERFGG 156 (284)
T ss_pred HHHHHHHHhCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 22 245678999998874 77888888777653
No 179
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.62 E-value=0.00066 Score=67.21 Aligned_cols=22 Identities=41% Similarity=0.681 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChHHHHHHHHhc
Q psy11425 129 IFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~ 150 (672)
+|+|.|++||||||+++.|.+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~ 22 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEH 22 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999886
No 180
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.62 E-value=0.00014 Score=69.40 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChHHHHHHHHhcC
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+|+|+|+|||||||+++.|.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998875
No 181
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.59 E-value=0.0014 Score=62.12 Aligned_cols=151 Identities=17% Similarity=0.149 Sum_probs=83.6
Q ss_pred eCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchHHHHH
Q psy11425 133 SAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIVR 212 (672)
Q Consensus 133 tGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~~I~~ 212 (672)
+|.|||||||+...|.+... ..| ++|.+.| .++...+|- +|.=+.-.... .+.....+.+..
T Consensus 1 MGVsG~GKStvg~~lA~~lg-~~f-------------idGDdlH--p~aNi~KM~-~GiPL~DdDR~-pWL~~l~~~~~~ 62 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLG-AKF-------------IDGDDLH--PPANIEKMS-AGIPLNDDDRW-PWLEALGDAAAS 62 (161)
T ss_pred CCCCccCHHHHHHHHHHHcC-Cce-------------ecccccC--CHHHHHHHh-CCCCCCcchhh-HHHHHHHHHHHH
Confidence 69999999999999998852 222 2355544 344444443 22211100000 001111223333
Q ss_pred HHhcCCeEEEEeeH--HHHH-HHHHhCCCcEEEEEeCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhhh--cCCCcE
Q psy11425 213 EIKSNVDILLEIDF--QGAK-QIKKKFPNAIGIFILPPSLDSLKERLYKRGQ-DKYDVISRRILSANKEISY--ANKFDY 286 (672)
Q Consensus 213 ~l~~G~~vIldi~~--~g~~-~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~-~~~e~i~~rl~~~~~e~~~--~~~~D~ 286 (672)
..+.|..+|+.++. ..++ .++...+...+||+..+ ++.+.+|+..|.. .=+ ...+.+|...++- ... |.
T Consensus 63 ~~~~~~~~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~-~~~i~~Rm~~R~gHFM~---~~ll~SQfa~LE~P~~de-~v 137 (161)
T COG3265 63 LAQKNKHVVIACSALKRSYRDLLREANPGLRFVYLDGD-FDLILERMKARKGHFMP---ASLLDSQFATLEEPGADE-DV 137 (161)
T ss_pred hhcCCCceEEecHHHHHHHHHHHhccCCCeEEEEecCC-HHHHHHHHHhcccCCCC---HHHHHHHHHHhcCCCCCC-CE
Confidence 44566666666533 2222 34455567778888865 9999999999964 211 2334455444432 233 55
Q ss_pred EEE-cC-CHHHHHHHHHHHHHh
Q psy11425 287 III-NN-KFSKALLQLKAIINA 306 (672)
Q Consensus 287 VI~-Nd-dle~a~~qL~~iI~~ 306 (672)
+.+ .+ ++++..+++..++..
T Consensus 138 i~idi~~~~e~vv~~~~~~l~~ 159 (161)
T COG3265 138 LTIDIDQPPEEVVAQALAWLKE 159 (161)
T ss_pred EEeeCCCCHHHHHHHHHHHHhc
Confidence 444 44 389999998888754
No 182
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=97.49 E-value=0.0013 Score=63.30 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=40.4
Q ss_pred cEEEEEeCCCHHHHHHHHHHcCC----CCHHH--HHHHHHHHHHHhhhcCCCcEEEEcCC--HHHHHHHHHHHHH
Q psy11425 239 AIGIFILPPSLDSLKERLYKRGQ----DKYDV--ISRRILSANKEISYANKFDYIIINNK--FSKALLQLKAIIN 305 (672)
Q Consensus 239 ~~vIfI~~ps~e~l~~RL~~Rg~----~~~e~--i~~rl~~~~~e~~~~~~~D~VI~Ndd--le~a~~qL~~iI~ 305 (672)
..+|||..+ ++.+.+|+..+.. ..... ....+.. .....|....|+++..++ .++...+|.+.|+
T Consensus 86 g~vI~L~~~-~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~-~R~~~Y~~~a~~~v~~~~~~~~~i~~~i~~~l~ 158 (158)
T PF01202_consen 86 GLVIYLDAD-PEELAERLRARDNRPLLKGKMEHEEILELLF-EREPLYEQAADIVVDTDGSPPEEIAEEILEFLK 158 (158)
T ss_dssp SEEEEEE---HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHH-HHHHHHHHHSSEEEETSSCHHHHHHHHHHHHH-
T ss_pred CEEEEEeCC-HHHHHHHHhCCCCCCCCCCCChHHHHHHHHH-HHHHHHHhcCeEEEeCCCCCHHHHHHHHHHHhC
Confidence 467999876 9999999998765 11121 1111111 334456667888888875 4888888877763
No 183
>KOG3877|consensus
Probab=97.49 E-value=0.0033 Score=64.94 Aligned_cols=134 Identities=15% Similarity=0.261 Sum_probs=76.5
Q ss_pred hhhhccccccceEEEEeCCCCCChHHHHHHHHhcCCCceee---------cccccccCCCCC--CCCc------ccccC-
Q psy11425 117 ELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLS---------ISTTTRPMRPGE--KNGR------EYYFT- 178 (672)
Q Consensus 117 E~~~r~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~---------v~~TTR~~r~~E--~~G~------dY~fv- 178 (672)
.+-.++.....++|++-|+.|||||++++.|+++....+++ .+++. ..|+.. ..+. .-++.
T Consensus 61 Dktskrf~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~-D~r~l~~~~p~~cr~~di~~Fy~d 139 (393)
T KOG3877|consen 61 DKTSKRFHENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGN-DLRNLYNKFPARCRLPDISMFYKD 139 (393)
T ss_pred chhhhhhcccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCc-cchhccccCCcccCchhHHHhccC
Confidence 33445666778999999999999999999999985222222 22211 111110 0000 00001
Q ss_pred ----CHHHHHHHHHcCCchhHHhHhccccCcchHHHHHHHhcCCeEEEEeeH----HHHHHHHHh---------------
Q psy11425 179 ----NIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDF----QGAKQIKKK--------------- 235 (672)
Q Consensus 179 ----s~~~F~~~i~~g~fle~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~----~g~~~l~~~--------------- 235 (672)
....|...+.+..|.+| .+++.-++..|.-|+++-+| -.+..++.+
T Consensus 140 PS~dlsa~~Q~r~y~~R~~QY-----------~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr 208 (393)
T KOG3877|consen 140 PSGDLSAAMQDRIYNCRFDQY-----------LDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVR 208 (393)
T ss_pred CCccHHHHHHHHHHHhHHHHH-----------HHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 12234444444445544 45667778889988888433 222222211
Q ss_pred -------CCCcEEEEEeCCCHHHHHHHHHHcCCCC
Q psy11425 236 -------FPNAIGIFILPPSLDSLKERLYKRGQDK 263 (672)
Q Consensus 236 -------~~~~~vIfI~~ps~e~l~~RL~~Rg~~~ 263 (672)
..-..+|+++.| -....+++++||...
T Consensus 209 ~nti~~ll~PHLViYld~P-v~~v~~~Ik~rg~~~ 242 (393)
T KOG3877|consen 209 KNTIPQLLWPHLVIYLDTP-VNKVLENIKRRGNTD 242 (393)
T ss_pred hhhhhhhcCccEEEEEcCC-cHHHHHHHHhcCCCc
Confidence 112458999988 667788899998653
No 184
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.48 E-value=0.0015 Score=65.50 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=23.7
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+|+|.||.|+|||||++.|.++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999864
No 185
>COG3911 Predicted ATPase [General function prediction only]
Probab=97.46 E-value=0.00044 Score=65.35 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=39.7
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCC-CCCCCCcccccCCHHHHHHHHHc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMR-PGEKNGREYYFTNIDNFKKLQKS 189 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r-~~E~~G~dY~fvs~~~F~~~i~~ 189 (672)
++++|+|+||+|||||.+.|.+.+.. .+..--++.-+ +.-..|....|.++..|......
T Consensus 10 ~~fIltGgpGaGKTtLL~aLa~~Gfa--tvee~~r~ii~~es~~gg~~lPW~D~~afael~~~ 70 (183)
T COG3911 10 KRFILTGGPGAGKTTLLAALARAGFA--TVEEAGRDIIALESAQGGTALPWTDPGAFAELVGL 70 (183)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHcCce--eeccchhhHHHHHHhcCCCcCCccChHHHHHHHHH
Confidence 69999999999999999999998632 11111110000 11234577788899999877543
No 186
>KOG1384|consensus
Probab=97.39 E-value=0.00054 Score=72.44 Aligned_cols=124 Identities=17% Similarity=0.083 Sum_probs=81.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCC---------ceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHH
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHK---------IKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWA 196 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~---------~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~ 196 (672)
+-++|||+|+.|||||-|+=-|+.++++ ++--...+|-++-..|..|+.+|....-.++.....++|-..
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~- 84 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDD- 84 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHH-
Confidence 5689999999999999999999998753 233334556566666778888875433222222222333222
Q ss_pred hHhccccCcchHHHHHHHhcCCeEEEEe-eHHHHHHHHHhC--------------------CCcEEEEEeCCCHHHHHHH
Q psy11425 197 EVHGNFYGTSFFPIVREIKSNVDILLEI-DFQGAKQIKKKF--------------------PNAIGIFILPPSLDSLKER 255 (672)
Q Consensus 197 ~~~g~~YGt~~~~I~~~l~~G~~vIldi-~~~g~~~l~~~~--------------------~~~~vIfI~~ps~e~l~~R 255 (672)
....|+.+...|+.-|+.+ +...++.+.... +++++++++++ ..++.+|
T Consensus 85 ---------a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~-~~VL~~~ 154 (348)
T KOG1384|consen 85 ---------ASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDAD-QAVLFER 154 (348)
T ss_pred ---------HHHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecc-hHHHHHH
Confidence 2446777888888866665 444444444431 34677888876 8899999
Q ss_pred HHHcC
Q psy11425 256 LYKRG 260 (672)
Q Consensus 256 L~~Rg 260 (672)
+-+|-
T Consensus 155 l~~RV 159 (348)
T KOG1384|consen 155 LDKRV 159 (348)
T ss_pred HHHHH
Confidence 98884
No 187
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.36 E-value=0.00038 Score=72.21 Aligned_cols=134 Identities=13% Similarity=-0.040 Sum_probs=72.9
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhcC---C-----------CceeecccccccCCCCCCCCcccccC--CHHHHHHH
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKKD---H-----------KIKLSISTTTRPMRPGEKNGREYYFT--NIDNFKKL 186 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~~---~-----------~~~~~v~~TTR~~r~~E~~G~dY~fv--s~~~F~~~ 186 (672)
....+-+|+|.|++|+||||+++.|.... + +|+++-..-. +.-.-..-|..-.|. .--.|-..
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~-~~glm~rKGfPeSyD~~~ll~fl~~ 156 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLD-ERGLMARKGFPESYDVAALLRFLSD 156 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhh-hccccccCCCCccccHHHHHHHHHH
Confidence 34557799999999999999999886653 2 1222111111 000000112111121 11224444
Q ss_pred HHc-CCchhHHhHhccccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHH---hCCCcEEEEEeCCCHHHHHHHHHHc
Q psy11425 187 QKS-GKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKK---KFPNAIGIFILPPSLDSLKERLYKR 259 (672)
Q Consensus 187 i~~-g~fle~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~---~~~~~~vIfI~~ps~e~l~~RL~~R 259 (672)
+++ +.-+.+..|....|-...+. ..+..+-.++|+++..-....--+ ..+..+.|||+++ .+.+++|+..|
T Consensus 157 vK~~~~~v~aPvysh~~yD~vpd~-~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~-~~~le~wyi~R 231 (283)
T COG1072 157 VKAGKPDVFAPVYSHLIYDPVPDA-FQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDAD-EELLEERYIER 231 (283)
T ss_pred HhcCCCccccccccccccccCCCc-eeecCCCCEEEEechhhhcCCCccccccccceEEEEecCC-HHHHHHHHHHH
Confidence 553 34466666666666554332 345556677888765433211111 1124568999987 99999999987
No 188
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.28 E-value=0.0012 Score=65.05 Aligned_cols=157 Identities=18% Similarity=0.193 Sum_probs=70.0
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeeccc-ccccCCCCCCCCccc-ccCCHH---HHHHHHHcCCchh---HHhHhc
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSIST-TTRPMRPGEKNGREY-YFTNID---NFKKLQKSGKFLE---WAEVHG 200 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~-TTR~~r~~E~~G~dY-~fvs~~---~F~~~i~~g~fle---~~~~~g 200 (672)
||.|++..|||++||++.|.+.. ++.+.... .....+.....-... .+.... .|...+..+.+.. ......
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~L-g~~~~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKL-GYPYYDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHC-T--EE-HHHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHc-CCccCCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 68999999999999999999986 22222111 111111111100000 111111 1211111111100 111122
Q ss_pred cccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-h-
Q psy11425 201 NFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKE-I- 278 (672)
Q Consensus 201 ~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e-~- 278 (672)
..+....+.|....+.| .||+.+- +...+-+..++.+-|||.+| .+.+.+|+++|...+.+.+.+.+...... .
T Consensus 80 ~~~~~~~~~i~~la~~~-~~Vi~GR--~a~~il~~~~~~l~V~i~A~-~~~Rv~ri~~~~~~s~~~A~~~i~~~D~~R~~ 155 (179)
T PF13189_consen 80 KIFRAQSEIIRELAAKG-NCVIVGR--CANYILRDIPNVLHVFIYAP-LEFRVERIMEREGISEEEAEKLIKKEDKRRRA 155 (179)
T ss_dssp HHHHHHHHHHHHHHH----EEEEST--THHHHTTT-TTEEEEEEEE--HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-CEEEEec--CHhhhhCCCCCeEEEEEECC-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 22322233444444455 5555542 22233344567788999987 99999999999777777777776553211 1
Q ss_pred ----------hhcCCCcEEEEc
Q psy11425 279 ----------SYANKFDYIIIN 290 (672)
Q Consensus 279 ----------~~~~~~D~VI~N 290 (672)
.....||+||.+
T Consensus 156 ~~~~~~~~~~~d~~~YDLvint 177 (179)
T PF13189_consen 156 YYKYYTGIDWGDPSNYDLVINT 177 (179)
T ss_dssp HHHHH-SS-TTBGGG-SEEEEE
T ss_pred HHHHHhCCCCCCchhceEEEeC
Confidence 112368988864
No 189
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.26 E-value=0.00015 Score=65.82 Aligned_cols=23 Identities=52% Similarity=0.814 Sum_probs=21.5
Q ss_pred EEEEeCCCCCChHHHHHHHHhcC
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+|+|+|+|||||||+++.|.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999974
No 190
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.23 E-value=0.0054 Score=68.04 Aligned_cols=28 Identities=36% Similarity=0.307 Sum_probs=24.8
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+...+.|+|+|++|||||||++.|.+.+
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3457889999999999999999999884
No 191
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.16 E-value=0.0035 Score=74.12 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=22.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+|.|.||+||||||+++.|.+.+
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~ 466 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEAL 466 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999986
No 192
>PLN02748 tRNA dimethylallyltransferase
Probab=97.16 E-value=0.00025 Score=79.64 Aligned_cols=101 Identities=14% Similarity=0.091 Sum_probs=62.4
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhcCCC---------ceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCch
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKKDHK---------IKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFL 193 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~---------~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fl 193 (672)
...++++|+|+||+|||||||+..|.+.+.. ++.-.+-.|-++-..|..|+.||+++--.....+..+.|.
T Consensus 18 ~~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~ 97 (468)
T PLN02748 18 QKGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFR 97 (468)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHH
Confidence 3456779999999999999999999998631 3333345666776778889998875321111111111122
Q ss_pred hHHhHhccccCcchHHHHHHHhcCCeEEEEeeHHH-HHHHH
Q psy11425 194 EWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQG-AKQIK 233 (672)
Q Consensus 194 e~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g-~~~l~ 233 (672)
.. -...|..+...|+..|+.+-.-. ++.+.
T Consensus 98 ~~----------A~~~I~~I~~rgk~PIlVGGTglYi~aLl 128 (468)
T PLN02748 98 DH----------AVPLIEEILSRNGLPVIVGGTNYYIQALV 128 (468)
T ss_pred HH----------HHHHHHHHHhcCCCeEEEcChHHHHHHHH
Confidence 11 13456667778988777764433 34443
No 193
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.14 E-value=0.0022 Score=72.93 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChHHHHHHHHhcC
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.|+|+|++||||||+++.|.+..
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~l 24 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVL 24 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998764
No 194
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.11 E-value=0.0053 Score=64.52 Aligned_cols=164 Identities=19% Similarity=0.289 Sum_probs=85.9
Q ss_pred hhhhccccc--cceEEEEeCCCCCChHHHHHHHHhcCC----CceeecccccccCCCCCCCCcccccCCHHHHHHHH-Hc
Q psy11425 117 ELKKKSFKS--FGNIFIISAPSGAGKSTLVNELLKKDH----KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQ-KS 189 (672)
Q Consensus 117 E~~~r~~~~--~~kiIvLtGpsGSGKSTLa~~L~e~~~----~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i-~~ 189 (672)
+.....+|. .+.+|+|||+||+||||+...|..++. .+....-+-+.+.-.|-. .-++--|...- ..
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsi------LGDRiRM~~~~~~~ 112 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSI------LGDRIRMQRLAVDP 112 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccc------cccHhhHHhhccCC
Confidence 333444443 456999999999999999999877652 233322233323222221 12344455444 45
Q ss_pred CCchhHHhHhccccCcchHHHH--HHHh-cCCeEEEEeeHHHH--HHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCH
Q psy11425 190 GKFLEWAEVHGNFYGTSFFPIV--REIK-SNVDILLEIDFQGA--KQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKY 264 (672)
Q Consensus 190 g~fle~~~~~g~~YGt~~~~I~--~~l~-~G~~vIldi~~~g~--~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~ 264 (672)
|-|+.--...|..=|.+..+-. .+++ .|.++|+. +.-|+ -+..-...-..++++..| ...++-
T Consensus 113 ~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIV-ETVGvGQsev~I~~~aDt~~~v~~p-----------g~GD~~ 180 (323)
T COG1703 113 GVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIV-ETVGVGQSEVDIANMADTFLVVMIP-----------GAGDDL 180 (323)
T ss_pred CeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEE-EecCCCcchhHHhhhcceEEEEecC-----------CCCcHH
Confidence 6666655555666666654322 2233 47775543 22222 111111223445777666 222221
Q ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEcC-C---HHHHHHHHHHHHHhc
Q psy11425 265 DVISRRILSANKEISYANKFDYIIINN-K---FSKALLQLKAIINAN 307 (672)
Q Consensus 265 e~i~~rl~~~~~e~~~~~~~D~VI~Nd-d---le~a~~qL~~iI~~~ 307 (672)
..++ . ...+..|++++|. | -+.++..+...+...
T Consensus 181 Q~iK----~-----GimEiaDi~vINKaD~~~A~~a~r~l~~al~~~ 218 (323)
T COG1703 181 QGIK----A-----GIMEIADIIVINKADRKGAEKAARELRSALDLL 218 (323)
T ss_pred HHHH----h-----hhhhhhheeeEeccChhhHHHHHHHHHHHHHhh
Confidence 2222 1 2234689999998 5 456677776666544
No 195
>PRK12495 hypothetical protein; Provisional
Probab=97.04 E-value=0.00072 Score=67.37 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=33.9
Q ss_pred HHHHHhhccccCCCCCcCccCCcchhhhhhhCCCccchhHHhhhhhhhhc
Q psy11425 72 KIQQSIINIDKKEYGWCKDTGEPIGILRLLAKPMATLSLEAQQRHELKKK 121 (672)
Q Consensus 72 ~i~~Al~ri~~gtyG~C~~Cge~Ip~~RL~a~P~a~~C~~c~~~~E~~~r 121 (672)
++-.-|.+-..-+.-+|.+||.||| ++|++++|+.||+.......
T Consensus 29 ~ma~lL~~gatmsa~hC~~CG~PIp-----a~pG~~~Cp~CQ~~~~~~~~ 73 (226)
T PRK12495 29 RMSELLLQGATMTNAHCDECGDPIF-----RHDGQEFCPTCQQPVTEDGA 73 (226)
T ss_pred HHHHHHHhhcccchhhcccccCccc-----CCCCeeECCCCCCccccccc
Confidence 3334444444557789999999999 67999999999987665443
No 196
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=97.01 E-value=0.015 Score=61.27 Aligned_cols=175 Identities=16% Similarity=0.143 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhhCCCceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEEeeCCCCC--C--CCCCCeE
Q psy11425 379 QAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLKDIP--M--NLPSGFI 454 (672)
Q Consensus 379 Q~~~v~~~l~~~~p~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aVHSlKD~p--~--~~~~gl~ 454 (672)
.++.++..|++.. |+++|++.+.+.++. -+||.+|++|+......+.= . .....|.
T Consensus 45 ~~~~~~~~l~~~~-G~~Vel~~f~~~~~~-------------------~~ALa~GdID~~~~qh~~~l~~~~~~~g~~l~ 104 (271)
T PRK11063 45 VAEVAQKVAKEKY-GLDVELVTFNDYVLP-------------------NEALSKGDIDANAFQHKPYLDQQIKDRGYKLV 104 (271)
T ss_pred HHHHHHHHHHHhc-CCeEEEEEecCcHHH-------------------HHHHHcCCcceecccCHHHHHHHHHHcCCcEE
Confidence 3677778887653 899999998754433 67999999999553222110 0 1122333
Q ss_pred EEEecCCCCCCceEEe------cCCCCCcCCCCCCeeecCc-H---HHHHHHHHh---------------------CC-C
Q psy11425 455 LCAILKREDPRDAFIS------NDYISLSTLPKNAVVGTNS-L---RRKVLIKSF---------------------FP-S 502 (672)
Q Consensus 455 i~a~~~R~d~~D~lv~------~~~~~~~~lp~~~~iGTsS-~---RR~~ql~~~---------------------~p-~ 502 (672)
+++. .++. .+.+++++||.|++|++.+ + =|...+++. .| +
T Consensus 105 ~~~~--------~~vvp~~~ys~~i~si~DL~~Gk~IAip~d~~n~~r~L~lL~~~Gli~l~~~~~~~~t~~di~~n~~~ 176 (271)
T PRK11063 105 AVGN--------TFVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTVLDIVENPKN 176 (271)
T ss_pred EEeE--------EEEEEeeccccCCCCHHHhcCCCEEEecCCCccHHHHHHHHHHCCCEEecCCCCCCCCHHHHhcCCCC
Confidence 3321 2332 3567899999999999876 2 344444333 23 6
Q ss_pred CeEEcccCCHHHHHhhhcCCCCCEeehhHhhHhhcCCCC-ceeeecCCCCCCCCCCCceEEEEEec---CcHHHHHHhhc
Q psy11425 503 LIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQK-RIRMLFSPNQILPAPGQGAIAIEILD---NRKELMEMLIP 578 (672)
Q Consensus 503 ~~~~~iRGNv~tRl~kl~~g~~daiilA~Agl~Rl~~~~-~~~~~l~~~~~~pa~gQGalave~r~---~d~~~~~~l~~ 578 (672)
++|+++.. ..=-+-|.+|+.||.++..-=....|+.. .-.-+++... -+++..+.+|. +++.+..+++.
T Consensus 177 v~~v~~~~--~~~~~al~~g~vDaa~i~~~~a~~a~~~~~~~~l~~e~~~-----~~~~~~~~v~~~~~~~~~~~~l~~a 249 (271)
T PRK11063 177 LKIVELEA--PQLPRSLDDAQIALAVINTTYASQIGLTPAKDGIFVEDKD-----SPYVNLIVAREDNKDAENVKKFVQA 249 (271)
T ss_pred CEEEECcH--HHHHHhcccccccEEEEChHHHHHcCCCCCCCeeEECCCC-----CCeEEEEEECCcccCCHHHHHHHHH
Confidence 88888853 34456688999999999877777777654 2112344332 14667777775 55789999999
Q ss_pred cCChhhHHhH
Q psy11425 579 LNHYFSEQTV 588 (672)
Q Consensus 579 i~~~~t~~~~ 588 (672)
+++++...-+
T Consensus 250 ~~s~~v~~~i 259 (271)
T PRK11063 250 YQSDEVYEAA 259 (271)
T ss_pred HcCHHHHHHH
Confidence 9988875544
No 197
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.99 E-value=0.0036 Score=74.67 Aligned_cols=67 Identities=12% Similarity=0.224 Sum_probs=39.3
Q ss_pred EEEEEeCCCHHHHHHHHHHcCC-CCHHHHHHHHH-HHHHHh---hhcCCC-cEEEEcC---CHHHHHHHHHHHHHhc
Q psy11425 240 IGIFILPPSLDSLKERLYKRGQ-DKYDVISRRIL-SANKEI---SYANKF-DYIIINN---KFSKALLQLKAIINAN 307 (672)
Q Consensus 240 ~vIfI~~ps~e~l~~RL~~Rg~-~~~e~i~~rl~-~~~~e~---~~~~~~-D~VI~Nd---dle~a~~qL~~iI~~~ 307 (672)
+-||++++ .+++.+|-..+.. .+.+.+...+. ++..+. ..-..+ |.+++|+ ++++++..+..+++..
T Consensus 157 ~K~~l~A~-~~~Ra~Rr~~~~~~~~~~~~~~~~~~Rd~~d~R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~~~ 232 (712)
T PRK09518 157 VRILLTAR-EEVRQARRSGQDRSETPGVVLEDVAARDEADSKVTSFLSAADGVTTLDNSDLDFDETLDLLIGLVEDA 232 (712)
T ss_pred eEEEEECC-HHHHHHHHHHhhhcCCHHHHHHHHHHHhhhcccccCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHhh
Confidence 45888876 6666666555433 45555544443 333333 222344 4454444 4899999999988654
No 198
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=96.98 E-value=0.00082 Score=71.50 Aligned_cols=97 Identities=13% Similarity=0.044 Sum_probs=59.0
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCCC--------ceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhH
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDHK--------IKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEV 198 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~~--------~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~ 198 (672)
+++|+|+||+|||||.|+-.|.+.+.. ++.-.+-.|-+|.+.|..++.||+++--........+.|.+.
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~--- 80 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKGKAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKE--- 80 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHH---
Confidence 469999999999999999999988421 222234556677777888888887643222111111222221
Q ss_pred hccccCcchHHHHHHHhcCCeEEEEeeH-HHHHHHH
Q psy11425 199 HGNFYGTSFFPIVREIKSNVDILLEIDF-QGAKQIK 233 (672)
Q Consensus 199 ~g~~YGt~~~~I~~~l~~G~~vIldi~~-~g~~~l~ 233 (672)
....|..+...|+..|+.+-. -.++.+.
T Consensus 81 -------a~~~i~~i~~~gk~PilvGGTglYi~all 109 (300)
T PRK14729 81 -------ALKIIKELRQQKKIPIFVGGSAFYFKHLK 109 (300)
T ss_pred -------HHHHHHHHHHCCCCEEEEeCchHHHHHHH
Confidence 134556666778887777543 3334443
No 199
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.95 E-value=0.0054 Score=59.06 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=22.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+..-|+|||+|||||||++..+.+..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 45679999999999999999887653
No 200
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.92 E-value=0.0079 Score=57.75 Aligned_cols=142 Identities=23% Similarity=0.178 Sum_probs=78.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc-CCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK-DHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYG 204 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~-~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YG 204 (672)
|+++.++.||.||||||+...+... .+.+ .|++.+++...+-...--...-..+.
T Consensus 1 m~~l~IvaG~NGsGKstv~~~~~~~~~~~~---------------------~~VN~D~iA~~i~p~~p~~~~i~A~r--- 56 (187)
T COG4185 1 MKRLDIVAGPNGSGKSTVYASTLAPLLPGI---------------------VFVNADEIAAQISPDNPTSAAIQAAR--- 56 (187)
T ss_pred CceEEEEecCCCCCceeeeeccchhhcCCe---------------------EEECHHHHhhhcCCCCchHHHHHHHH---
Confidence 4678889999999999997544222 1222 34445544433311100000000000
Q ss_pred cchHHHHHHHhcCCeEEEEeeH------HHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHc----CC-CCHHHHHHHHHH
Q psy11425 205 TSFFPIVREIKSNVDILLEIDF------QGAKQIKKKFPNAIGIFILPPSLDSLKERLYKR----GQ-DKYDVISRRILS 273 (672)
Q Consensus 205 t~~~~I~~~l~~G~~vIldi~~------~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~R----g~-~~~e~i~~rl~~ 273 (672)
.-...+...++.|....++... +.++..+...+.....|+.-++.+.-.+|++.| |. ..++.+++|-.+
T Consensus 57 ~ai~~i~~~I~~~~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~r 136 (187)
T COG4185 57 VAIDRIARLIDLGRPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRR 136 (187)
T ss_pred HHHHHHHHHHHcCCCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 0012344566777777777543 233444455566666777778888888888877 33 345667777666
Q ss_pred HHHHh-hhcCCCcE-EEEcC
Q psy11425 274 ANKEI-SYANKFDY-IIINN 291 (672)
Q Consensus 274 ~~~e~-~~~~~~D~-VI~Nd 291 (672)
....+ .+-+.||- .|.||
T Consensus 137 sle~l~~~l~l~dr~~IydN 156 (187)
T COG4185 137 SLELLAQALTLADRATIYDN 156 (187)
T ss_pred HHHHHHHHHhhcceeEEecC
Confidence 44433 45677885 44444
No 201
>PHA00729 NTP-binding motif containing protein
Probab=96.83 E-value=0.0042 Score=63.44 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=33.4
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCC-Cce-eecccccccCCCCCCCCcccccCCHHHHHHHHH
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDH-KIK-LSISTTTRPMRPGEKNGREYYFTNIDNFKKLQK 188 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~-~~~-~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~ 188 (672)
-|+|+|+||+||||++..|..... .+. .+..+.. -..+....|++.+.+...+.
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~------~d~~~~~~fid~~~Ll~~L~ 74 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDA------WQYVQNSYFFELPDALEKIQ 74 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhH------HhcCCcEEEEEHHHHHHHHH
Confidence 689999999999999999987631 111 1111111 12244556777777666553
No 202
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=96.80 E-value=0.014 Score=60.26 Aligned_cols=140 Identities=14% Similarity=0.146 Sum_probs=76.8
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcch
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSF 207 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~ 207 (672)
++|+|+|.||||||+-++.|.+.++ +++... || .+.. +|++.. | +..
T Consensus 2 ~lvIVTGlSGAGKsvAl~~lEDlGy---ycvDNL--Pp----------------~Llp-----~~~~~~------~-~~~ 48 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVLEDLGY---YCVDNL--PP----------------QLLP-----KLADLM------L-TLE 48 (286)
T ss_pred cEEEEecCCCCcHHHHHHHHHhcCe---eeecCC--CH----------------HHHH-----HHHHHH------h-hcc
Confidence 5899999999999999999988862 333211 11 1111 122210 0 000
Q ss_pred HHHHHHHhcCCeEEEEee--------HHHHHHHHHhC-CCcEEEEEeCCCHHHHHHHHHHcCCCCHHH----HHHHHHHH
Q psy11425 208 FPIVREIKSNVDILLEID--------FQGAKQIKKKF-PNAIGIFILPPSLDSLKERLYKRGQDKYDV----ISRRILSA 274 (672)
Q Consensus 208 ~~I~~~l~~G~~vIldi~--------~~g~~~l~~~~-~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~----i~~rl~~~ 274 (672)
.. ...-.+++|+. .+.+.+++... .++.++|+++. .+++.+|-..-.+.-+=. +..-|...
T Consensus 49 ~~-----~~kvAv~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~-~~~Lv~RY~etRR~HPL~~~~~l~~~I~~E 122 (286)
T COG1660 49 SR-----ITKVAVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEAD-DETLVRRYSETRRSHPLSEDGLLLEAIAKE 122 (286)
T ss_pred cC-----CceEEEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECc-hhHHHHHHhhhhhcCCCCccCcHHHHHHHH
Confidence 00 01122555541 13334555553 35888999975 889999988532221111 12222221
Q ss_pred HH-HhhhcCCCcEEEEcCC--HHHHHHHHHHHHHh
Q psy11425 275 NK-EISYANKFDYIIINNK--FSKALLQLKAIINA 306 (672)
Q Consensus 275 ~~-e~~~~~~~D~VI~Ndd--le~a~~qL~~iI~~ 306 (672)
.. -......+|+||...+ .-+.-+.|...+..
T Consensus 123 RelL~pLk~~A~~vIDTs~ls~~~Lr~~i~~~f~~ 157 (286)
T COG1660 123 RELLAPLREIADLVIDTSELSVHELRERIRTRFLG 157 (286)
T ss_pred HHHHHHHHHHhhhEeecccCCHHHHHHHHHHHHcc
Confidence 11 1245567999998774 67777777777763
No 203
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=96.77 E-value=0.0041 Score=74.91 Aligned_cols=78 Identities=5% Similarity=0.082 Sum_probs=47.1
Q ss_pred EEEEEeCCCHHHHHHHHHHc-CCCCHHHHHHHH-HHHHHHhh-----hcCCCcEEEEcC---CHHHHHHHHHHHHHhccc
Q psy11425 240 IGIFILPPSLDSLKERLYKR-GQDKYDVISRRI-LSANKEIS-----YANKFDYIIINN---KFSKALLQLKAIINANRC 309 (672)
Q Consensus 240 ~vIfI~~ps~e~l~~RL~~R-g~~~~e~i~~rl-~~~~~e~~-----~~~~~D~VI~Nd---dle~a~~qL~~iI~~~~~ 309 (672)
+-||+++.......+|..+. ...+.+.+...+ .++..+.. ....-|.+++++ ++++++.++...+.+-.+
T Consensus 209 ~KifL~As~e~RA~RR~~e~~~~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDts~l~ieevv~~i~~~~~~~~~ 288 (863)
T PRK12269 209 LKCYLDASIEARVARRWAQGTSRLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDTSCLTIEEVCERIAREAHRRAL 288 (863)
T ss_pred EEEEEECCHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEECCCCCHHHHHHHHHHHHHhccc
Confidence 45888876444444454432 223455555554 33333331 123457766665 399999999999998888
Q ss_pred ccccccch
Q psy11425 310 FMARVTIE 317 (672)
Q Consensus 310 ~m~r~~~~ 317 (672)
|-.-.+|+
T Consensus 289 ~~~~~~~~ 296 (863)
T PRK12269 289 WGGERSVE 296 (863)
T ss_pred cccccccc
Confidence 86655554
No 204
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.75 E-value=0.014 Score=63.29 Aligned_cols=53 Identities=13% Similarity=0.006 Sum_probs=32.7
Q ss_pred CCcEEEEEeCCCHHHHHHHHHHcCCC-CHHHHHHHHHHHH-HH--hhhcCCCcEEEEc
Q psy11425 237 PNAIGIFILPPSLDSLKERLYKRGQD-KYDVISRRILSAN-KE--ISYANKFDYIIIN 290 (672)
Q Consensus 237 ~~~~vIfI~~ps~e~l~~RL~~Rg~~-~~e~i~~rl~~~~-~e--~~~~~~~D~VI~N 290 (672)
....+||+.+| .++..+|..+|+.. +++.+.....+.. .. ...+....++|..
T Consensus 154 ~~~~~V~ld~p-le~~l~RN~~R~~~v~devie~m~~r~E~P~~~~nrWd~pl~~v~~ 210 (340)
T TIGR03575 154 LGFCQLFLDCP-VESCLLRNKQRPVPLPDETIQLMGRKIEKPNPEKNAWEHNSLVIQS 210 (340)
T ss_pred CCEEEEEEeCC-HHHHHHHHhcCCCCCCHHHHHHHHHHhcCCCCCCCCCCCCeEEEec
Confidence 35567888877 99999999999754 4455444433322 11 2334556677765
No 205
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.72 E-value=0.001 Score=54.99 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChHHHHHHHHhcC
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+|+|+|+|||||||+++.|.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998874
No 206
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.70 E-value=0.0034 Score=60.88 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=38.8
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCC-ceeecccccccCCCCCCCCcccccCCHHHHHHHH
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHK-IKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQ 187 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~-~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i 187 (672)
..+-+|.|+||||+||||+.+.++...+. -+.. + ..|.+|.-.+++.|.+.+
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l----~-------f~Ge~vs~~~pea~Rq~V 79 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL----L-------FEGEDVSTLKPEAYRQQV 79 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhccCCCCceE----E-------EcCccccccChHHHHHHH
Confidence 45779999999999999999999887532 1111 1 237788888888888765
No 207
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=96.70 E-value=0.0018 Score=63.33 Aligned_cols=159 Identities=17% Similarity=0.216 Sum_probs=78.8
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCC--c-eeecccccccCCCCCCCCcccccCCHHHHHHHHHc--------CCchhHHh
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHK--I-KLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKS--------GKFLEWAE 197 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~--~-~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~--------g~fle~~~ 197 (672)
+|+|+|-.+|||.|+++.|.+.+.. . .+.++..+...- .+.-|.+ |..++.+ ..+++|++
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~-A~~~gld--------~~~Ll~d~~YKE~~R~~mi~w~e 71 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQY-AQEHGLN--------FQRLLDTSTYKEAFRKDMIRWGE 71 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHH-HHHhChh--------HHHhcCCcccchhhhHHHHHHHH
Confidence 5899999999999999999766421 0 122222221100 0011222 2222222 23466654
Q ss_pred Hhc-cccCcchHHHHHHHhcCCeEEEE-e-eHHHHHHHHHhCC-CcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy11425 198 VHG-NFYGTSFFPIVREIKSNVDILLE-I-DFQGAKQIKKKFP-NAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILS 273 (672)
Q Consensus 198 ~~g-~~YGt~~~~I~~~l~~G~~vIld-i-~~~g~~~l~~~~~-~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~ 273 (672)
-.. .-+|.-...+...+. ..++|+. + ...-+..++..++ ..+.|-|.++ .+++.+|.-....-.+ .
T Consensus 72 ~~r~~dp~~F~r~~~~~~~-~~v~iIsD~Rr~~dv~~f~~~~g~~~~~VRV~As-eetR~~Rgw~Ft~gvd--------d 141 (182)
T TIGR01223 72 EKRQADPGFFCRKIVEGIS-QPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVAL-EQSRQQRGWVFTPGVD--------D 141 (182)
T ss_pred HHHhhCccHHHHHHHhccC-CCEEEEeCCCcccHHHHHHHHcCCceEEEEEecC-HHHHHHHHHhcccccc--------c
Confidence 322 224433322222222 2233332 2 2233455566554 3455667764 8888877643311100 0
Q ss_pred HHHHhhh--cCCCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 274 ANKEISY--ANKFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 274 ~~~e~~~--~~~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
...|-.. ...+|+||.|+ +.+...++|..++..
T Consensus 142 ~~SEc~lDd~~~~D~vi~Nd~~~~~l~~~l~~l~~~ 177 (182)
T TIGR01223 142 AESECGLDNFGDFDWVIENHGVEQRLEEQLENLIEF 177 (182)
T ss_pred cccccCCCcccceeEEEecCCChHHHHHHHHHHHHH
Confidence 1112111 13599999999 477778888777764
No 208
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.52 E-value=0.028 Score=55.60 Aligned_cols=27 Identities=37% Similarity=0.441 Sum_probs=24.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
.+..++|+||+||||||+.+.|....+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 467899999999999999999987754
No 209
>PRK09087 hypothetical protein; Validated
Probab=96.49 E-value=0.04 Score=56.46 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=21.7
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+.++|+||+|||||+|++.+.+..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999887653
No 210
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.47 E-value=0.018 Score=62.25 Aligned_cols=27 Identities=37% Similarity=0.316 Sum_probs=23.9
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.|+|+|+||||||||++.|...+
T Consensus 160 ~~~~~~~~~G~~~~gkstl~~~l~~~~ 186 (325)
T TIGR01526 160 FFVKTVAILGGESTGKSTLVNKLAAVF 186 (325)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 346789999999999999999999874
No 211
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.43 E-value=0.0043 Score=66.02 Aligned_cols=98 Identities=15% Similarity=0.092 Sum_probs=60.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCC---------ceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHH
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHK---------IKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWA 196 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~---------~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~ 196 (672)
.+++|+|+||+|||||.++-.|++..++ ++.-..--|-+|...|..|+.||..+--.........+|.+.
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~- 80 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRD- 80 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHH-
Confidence 4679999999999999999999998754 222223445566667888888886432222111111122221
Q ss_pred hHhccccCcchHHHHHHHhcCCeEEEEeeHHHH-HHHH
Q psy11425 197 EVHGNFYGTSFFPIVREIKSNVDILLEIDFQGA-KQIK 233 (672)
Q Consensus 197 ~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~-~~l~ 233 (672)
....|..+...|+.-|+.+-.-.+ +.+.
T Consensus 81 ---------a~~~i~~i~~rgk~pIlVGGTglY~~aL~ 109 (308)
T COG0324 81 ---------ALAAIDDILARGKLPILVGGTGLYLKALL 109 (308)
T ss_pred ---------HHHHHHHHHhCCCCcEEEccHHHHHHHHH
Confidence 134566777789887777644333 4443
No 212
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.38 E-value=0.0025 Score=64.18 Aligned_cols=26 Identities=42% Similarity=0.594 Sum_probs=22.9
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+-+++|+|||||||||+.+.|-..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 46789999999999999999998554
No 213
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.36 E-value=0.0025 Score=64.96 Aligned_cols=30 Identities=43% Similarity=0.457 Sum_probs=25.0
Q ss_pred cccccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 122 SFKSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 122 ~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.....+.+++|+||||||||||.+.|.-..
T Consensus 26 l~i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 26 LEIEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 334568899999999999999999986554
No 214
>TIGR00363 lipoprotein, YaeC family. This family of putative lipoproteins contains a consensus site for lipoprotein signal sequence cleavage. Included in this family is the E. coli hypothetical protein yaeC. About half of the proteins between the noise and trusted cutoffs contain the consensus lipoprotein signature and may belong to this family.
Probab=96.33 E-value=0.066 Score=56.01 Aligned_cols=180 Identities=17% Similarity=0.098 Sum_probs=110.4
Q ss_pred HHHHHHHHhhCCCceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEEeeCCCCCC--CCCCCeEEEEe
Q psy11425 381 EYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLKDIPM--NLPSGFILCAI 458 (672)
Q Consensus 381 ~~v~~~l~~~~p~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aVHSlKD~p~--~~~~gl~i~a~ 458 (672)
+.+.+.+.+. .|+++|++.+..-.+ ..+||.+|+||+......+.-. .-..|+.+.++
T Consensus 34 ~~~~~~~~~~-~G~~Ve~~~f~d~~~-------------------~~~Al~~G~ID~~~~q~~~~l~~~~~~~g~~lv~v 93 (258)
T TIGR00363 34 EVAAKVAKEK-YGLDVELVEFNDYAL-------------------PNEAVSKGDLDANAFQHKPYLDQDAKAKGYKLVAV 93 (258)
T ss_pred HHHHHHHHHh-cCCEEEEEEeCCcHH-------------------HHHHHHcCCCCeEecCCHHHHHHHHHhCCCcEEEE
Confidence 3445555443 279999999875332 3689999999998643222101 11234555554
Q ss_pred cCCC-CCCceEEecCCCCCcCCCCCCeeecC----cHHHHHHHHHh----------------------CCCCeEEcccCC
Q psy11425 459 LKRE-DPRDAFISNDYISLSTLPKNAVVGTN----SLRRKVLIKSF----------------------FPSLIIKSLRGN 511 (672)
Q Consensus 459 ~~R~-d~~D~lv~~~~~~~~~lp~~~~iGTs----S~RR~~ql~~~----------------------~p~~~~~~iRGN 511 (672)
.+=- -| =.+.+++++++++||.|++|+.+ ..=|.-.++.. ..|++++++--+
T Consensus 94 ~~~~~~p-~~~ys~~~~sl~dlk~G~~IAip~d~~n~~raL~~L~~aGLi~l~~~~~~~~t~~DI~~n~~~v~~vel~~~ 172 (258)
T TIGR00363 94 GNTFVYP-LAGYSKKIKNVNELQDGAKVAVPNDPTNLGRALLLLQKQGLIKLKDGNGLLPTVLDIVENPKKLNITELETS 172 (258)
T ss_pred eeeEEec-ccccCcCCCCHHHcCCCCEEEEeCCcchHHHHHHHHHHcCCceecCCCCCcCChhhhhcCCCCCEEEEcCHH
Confidence 3100 00 02235678899999999999854 33555445544 446888888753
Q ss_pred HHHHHhhhcCCCCCEeehhHhhHhhcCCCCc-eeeecCCCCCCCCCCCceEEEEEec---CcHHHHHHhhccCChhhHHh
Q psy11425 512 IDTRLNKLDKGEYAAIILAAAGLKRLNLQKR-IRMLFSPNQILPAPGQGAIAIEILD---NRKELMEMLIPLNHYFSEQT 587 (672)
Q Consensus 512 v~tRl~kl~~g~~daiilA~Agl~Rl~~~~~-~~~~l~~~~~~pa~gQGalave~r~---~d~~~~~~l~~i~~~~t~~~ 587 (672)
+=.+-|.+|..||.++...=+...|+... -.-+++... -+|+-.+.+|. +++.+.++++.+++++...-
T Consensus 173 --~~~~al~~g~vDaa~v~~~~~~~agl~~~~~~i~~e~~~-----~~~~n~l~~r~~~~~~~~~~~lv~~~~s~~v~~~ 245 (258)
T TIGR00363 173 --QLPRALDDPKVDLAVINTTYAGQVGLNPQDDGVFVEDKD-----SPYVNIIVSREDNKDAENVKDFIQSYQSEEVYQA 245 (258)
T ss_pred --HHHHHhhcccccEEEEChHHHHHcCCCcCcCceeecCCC-----CCeeEEEEEcCCccCCHHHHHHHHHHcCHHHHHH
Confidence 33477899999999986655555555421 112333221 24667777775 45689999999998887544
Q ss_pred H
Q psy11425 588 V 588 (672)
Q Consensus 588 ~ 588 (672)
.
T Consensus 246 i 246 (258)
T TIGR00363 246 A 246 (258)
T ss_pred H
Confidence 4
No 215
>KOG0744|consensus
Probab=96.21 E-value=0.099 Score=55.68 Aligned_cols=27 Identities=26% Similarity=0.640 Sum_probs=24.7
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.-.++|.|.||||+|||||++.|+++.
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred eeeeEEEEeCCCCCChhHHHHHHHHhh
Confidence 357899999999999999999999985
No 216
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.11 E-value=0.011 Score=65.50 Aligned_cols=242 Identities=17% Similarity=0.179 Sum_probs=131.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCC--CcccccCCHHHHHHHHHcCCchhHHhHhcccc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKN--GREYYFTNIDNFKKLQKSGKFLEWAEVHGNFY 203 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~--G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~Y 203 (672)
.+.-|+|+|-|-+|||||.+.|...........+-|||.+-..+.. |..|.+++..-+.+..+-.+-+| +|
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E-------~~ 249 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVE-------KY 249 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceE-------EE
Confidence 3567999999999999999999888655666788899887655444 77777776554433322111122 35
Q ss_pred CcchHHHHHHHhcCCeEEEEeeH-HHH-------HHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy11425 204 GTSFFPIVREIKSNVDILLEIDF-QGA-------KQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSAN 275 (672)
Q Consensus 204 Gt~~~~I~~~l~~G~~vIldi~~-~g~-------~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~ 275 (672)
...+ +. ..++.-.+|++.++. +++ -.+......+.+|.+- - ++.+.+ .....+..+..+.+..
T Consensus 250 Sv~r-t~-~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvN-K-WDl~~~-----~~~~~~~~k~~i~~~l 320 (444)
T COG1160 250 SVAR-TL-KAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVN-K-WDLVEE-----DEATMEEFKKKLRRKL 320 (444)
T ss_pred eehh-hH-hHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEE-c-cccCCc-----hhhHHHHHHHHHHHHh
Confidence 4443 22 455555666655533 111 1122334456545443 3 232221 1122233444444433
Q ss_pred HHhhhcCCCcEEEEcC-CHHHHHHHHHHHHHhcccccccccchhhhhhhhcchhHHHHHHHHhhh-hhc-CCCcccc--c
Q psy11425 276 KEISYANKFDYIIINN-KFSKALLQLKAIINANRCFMARVTIEDGLKKINNRFKLTLCAVYRARQ-LLK-GHTKKII--G 350 (672)
Q Consensus 276 ~e~~~~~~~D~VI~Nd-dle~a~~qL~~iI~~~~~~m~r~~~~~~~~~~~~~y~l~~~~~~~a~~-~~~-~~~~~~~--~ 350 (672)
..+.|...+...-.+. .++..+..+..+.+...++.+...+++.++. |.+.+. ... |....+. .
T Consensus 321 ~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~-----------a~~~~pP~~~~G~r~ki~Ya~ 389 (444)
T COG1160 321 PFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSLLNRVLED-----------AVAKHPPPVRYGRRLKIKYAT 389 (444)
T ss_pred ccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHHHHHHHHHH-----------HHHhCCCCccCCceEEEEEEe
Confidence 3334433333333333 4889999998888887777777555444332 222211 111 2222111 1
Q ss_pred ccCCCcchhhhhhhcCcCccccchHHHHHHHHHHHHHHhhC--CCceEEEEe
Q psy11425 351 CDNDKVTVIALREISHGKIGVEIRLAIWQAEYVRKKIIELY--PWCKVEILG 400 (672)
Q Consensus 351 ~~~~k~~~~a~~~~~~~~v~r~S~LAl~Q~~~v~~~l~~~~--p~~~~e~~~ 400 (672)
-.+.+|-...+ -+++...|---..++..+.|++.| +|..+.+..
T Consensus 390 q~~~~PP~fvl------f~N~~~~~~~sY~RyL~n~~R~~f~~~g~Pi~l~~ 435 (444)
T COG1160 390 QVSTNPPTFVL------FGNRPKALHFSYKRYLENRLRKAFGFEGTPIRLEF 435 (444)
T ss_pred cCCCCCCEEEE------EecchhhCchHHHHHHHHHHHHHcCCCCCcEEEEE
Confidence 11233333222 122777777889999999999875 566665543
No 217
>KOG3327|consensus
Probab=96.08 E-value=0.13 Score=50.82 Aligned_cols=176 Identities=13% Similarity=0.219 Sum_probs=85.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC-CCceeecccccccCCCCCCCC--cccccCCHHHHHHHHHcCCchhHHhHhcc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD-HKIKLSISTTTRPMRPGEKNG--REYYFTNIDNFKKLQKSGKFLEWAEVHGN 201 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~-~~~~~~v~~TTR~~r~~E~~G--~dY~fvs~~~F~~~i~~g~fle~~~~~g~ 201 (672)
.++..|++-|--.|||||.+..|.+.. +....+.. ..=|.|...... ..|.- +...-..-+-..-+.-+
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~~~~~~~~l-~~FP~Rst~iGk~i~~YL~-------k~~dl~d~~iHLlFSAn 74 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESLIPGLDPAEL-LRFPERSTSIGKLIDGYLR-------KKSDLPDHTIHLLFSAN 74 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHHHhccChHHh-hhcchhcccccHHHHHHHH-------hccCCcHHHHHHHhccc
Confidence 357899999999999999999997764 22110100 000111111111 11110 00000000111112233
Q ss_pred ccCcchHHHHHHHhcCCeEEEEe-eHHHH-----HHHHHh--------CCCc-EEEEEeCCCHHHHHHHHHHcCCCCHHH
Q psy11425 202 FYGTSFFPIVREIKSNVDILLEI-DFQGA-----KQIKKK--------FPNA-IGIFILPPSLDSLKERLYKRGQDKYDV 266 (672)
Q Consensus 202 ~YGt~~~~I~~~l~~G~~vIldi-~~~g~-----~~l~~~--------~~~~-~vIfI~~ps~e~l~~RL~~Rg~~~~e~ 266 (672)
.|-. ...|.+.+.+|.++|+|= .+.|+ +.+-.. .+.| .++|+..+ ++. ..|...+|.+..+.
T Consensus 75 Rwe~-~~~i~e~l~kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~-p~~-~a~rggfG~Erye~ 151 (208)
T KOG3327|consen 75 RWEH-VSLIKEKLAKGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVS-PED-AARRGGFGEERYET 151 (208)
T ss_pred hhhH-HHHHHHHHhcCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCC-HHH-HHHhcCcchhHHHH
Confidence 3322 345677788899999982 33333 221110 0122 36778776 666 44445566554333
Q ss_pred H--HHHHHHHHHHhhhcCCCcEEEEcC--CHHHHHHHHHHHHHhccccc
Q psy11425 267 I--SRRILSANKEISYANKFDYIIINN--KFSKALLQLKAIINANRCFM 311 (672)
Q Consensus 267 i--~~rl~~~~~e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~~~~~~m 311 (672)
. .++.....+.+.........+++. ++++..++|..+++......
T Consensus 152 v~fqekv~~~~q~l~r~e~~~~~~vDAs~sve~V~~~V~~i~e~~~~~~ 200 (208)
T KOG3327|consen 152 VAFQEKVLVFFQKLLRKEDLNWHVVDASKSVEKVHQQVRSLVENVLSEP 200 (208)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEecCccHHHHHHHHHHHHHHhccCC
Confidence 2 222222222222222333344444 59999999988887654433
No 218
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.07 E-value=0.03 Score=60.58 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=22.7
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+|+|+|+|||||||+++.|....
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999876553
No 219
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.99 E-value=0.0059 Score=55.02 Aligned_cols=26 Identities=35% Similarity=0.681 Sum_probs=23.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
+..++|+||+||||||+++.|.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Confidence 46799999999999999999988764
No 220
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.99 E-value=0.0048 Score=59.83 Aligned_cols=25 Identities=40% Similarity=0.663 Sum_probs=22.7
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+++++|+|+||+|||||+|.|....
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4899999999999999999998763
No 221
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.97 E-value=0.0066 Score=49.32 Aligned_cols=24 Identities=38% Similarity=0.789 Sum_probs=20.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
+.+..|+|++|||||||...+.-.
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999988544
No 222
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=95.97 E-value=0.14 Score=49.42 Aligned_cols=29 Identities=34% Similarity=0.266 Sum_probs=26.1
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.|...|+|.|+||-.||||||++.|...+
T Consensus 4 rp~F~K~VailG~ESsGKStLv~kLA~~f 32 (187)
T COG3172 4 RPFFVKTVAILGGESSGKSTLVNKLANIF 32 (187)
T ss_pred chhhheeeeeecCcccChHHHHHHHHHHh
Confidence 45678999999999999999999998875
No 223
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.052 Score=63.11 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=24.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+++|++|+||||+|||+|.+-+++..
T Consensus 348 ~kGpILcLVGPPGVGKTSLgkSIA~al 374 (782)
T COG0466 348 LKGPILCLVGPPGVGKTSLGKSIAKAL 374 (782)
T ss_pred CCCcEEEEECCCCCCchhHHHHHHHHh
Confidence 457899999999999999999998864
No 224
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.93 E-value=0.0063 Score=54.96 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=21.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHH
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELL 148 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~ 148 (672)
.+.+++|.|||||||||+++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 46799999999999999999986
No 225
>KOG1969|consensus
Probab=95.91 E-value=0.019 Score=66.48 Aligned_cols=28 Identities=29% Similarity=0.570 Sum_probs=24.4
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
++..||..|+||+|.|||||+..++.+-
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa 350 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA 350 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc
Confidence 3556899999999999999999998873
No 226
>PHA03132 thymidine kinase; Provisional
Probab=95.83 E-value=0.055 Score=62.36 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=24.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+.+|+|-|+.||||||+++.|.+..
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~l 281 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGIL 281 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999999875
No 227
>KOG0057|consensus
Probab=95.81 E-value=0.01 Score=66.90 Aligned_cols=82 Identities=17% Similarity=0.156 Sum_probs=54.7
Q ss_pred cccccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHH----HcCCchhHHh
Q psy11425 122 SFKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQ----KSGKFLEWAE 197 (672)
Q Consensus 122 ~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i----~~g~fle~~~ 197 (672)
...+.+.-++|+|++||||||+.+.|...+. +.-.+ -++|.+..-++.+.+.+.+ +++.+...+-
T Consensus 373 f~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I----------~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTI 441 (591)
T KOG0057|consen 373 FTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSI----------LIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTI 441 (591)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcE----------EECCeeHhhhChHHhhhheeEeCCcccccchhH
Confidence 3445688999999999999999999988763 11111 2578888888888888876 3333333344
Q ss_pred HhccccCcchHHHHHHH
Q psy11425 198 VHGNFYGTSFFPIVREI 214 (672)
Q Consensus 198 ~~g~~YGt~~~~I~~~l 214 (672)
.++-.||-+..+-+++.
T Consensus 442 l~NI~YGn~sas~eeV~ 458 (591)
T KOG0057|consen 442 LYNIKYGNPSASDEEVV 458 (591)
T ss_pred HHHhhcCCCCcCHHHHH
Confidence 45556665544444443
No 228
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.79 E-value=0.012 Score=60.51 Aligned_cols=29 Identities=34% Similarity=0.442 Sum_probs=25.2
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
....+-++.|.||||+|||||.+.+.-..
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568899999999999999999998765
No 229
>KOG3308|consensus
Probab=95.77 E-value=0.07 Score=53.22 Aligned_cols=29 Identities=28% Similarity=0.172 Sum_probs=25.5
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCCCce
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDHKIK 155 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~~~~ 155 (672)
..+|+|+|.+.||||||++.|.+.+++-.
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~~ 32 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPGCS 32 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccCCe
Confidence 46899999999999999999999987543
No 230
>PRK06851 hypothetical protein; Provisional
Probab=95.76 E-value=0.091 Score=57.60 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=35.4
Q ss_pred hCCCccchhHHhhhhhhhhccccccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 102 AKPMATLSLEAQQRHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 102 a~P~a~~C~~c~~~~E~~~r~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
-.+++..+...-...+..- ....++++|+|+||+||||++..+.+..
T Consensus 192 ~F~ga~Tp~G~~s~~~~l~---~~~~~~~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 192 LFLGAITPKGAVDFVPSLT---EGVKNRYFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred eeccccCCCcHHhhHHhHh---cccceEEEEeCCCCCcHHHHHHHHHHHH
Confidence 4677777766665555443 3456899999999999999999987764
No 231
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.74 E-value=0.0082 Score=67.04 Aligned_cols=56 Identities=23% Similarity=0.190 Sum_probs=42.5
Q ss_pred cccccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHH
Q psy11425 122 SFKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQ 187 (672)
Q Consensus 122 ~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i 187 (672)
.....+-.++|+||||||||||++.|.--++...-.| ..||-+++-.++++|.+-+
T Consensus 357 F~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~V----------RLDga~l~qWd~e~lG~hi 412 (580)
T COG4618 357 FALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSV----------RLDGADLRQWDREQLGRHI 412 (580)
T ss_pred eEecCCceEEEECCCCccHHHHHHHHHcccccCCCcE----------EecchhhhcCCHHHhcccc
Confidence 3445678999999999999999999988775443333 3567777777888887654
No 232
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.73 E-value=0.0082 Score=58.93 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=23.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++++++|+|+||||||||++.|....
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHH
Confidence 356799999999999999999988664
No 233
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.66 E-value=0.23 Score=58.13 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+..++|+||+|+||||+++.|.+..
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998875
No 234
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.60 E-value=0.018 Score=54.16 Aligned_cols=27 Identities=41% Similarity=0.688 Sum_probs=24.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+|+|.|+.|+||||+++.+.+..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 346799999999999999999998875
No 235
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.58 E-value=0.011 Score=70.04 Aligned_cols=106 Identities=16% Similarity=0.097 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhhccccCCCCCcCccCCcchhhhhhhCCCccchhHHhhh---hhhh-------hccccccceEEEEeCCC
Q psy11425 67 RKLLIKIQQSIINIDKKEYGWCKDTGEPIGILRLLAKPMATLSLEAQQR---HELK-------KKSFKSFGNIFIISAPS 136 (672)
Q Consensus 67 ~~~l~~i~~Al~ri~~gtyG~C~~Cge~Ip~~RL~a~P~a~~C~~c~~~---~E~~-------~r~~~~~~kiIvLtGps 136 (672)
-.+++++..|..|+.+=-.--=+.+++.- +...|...-++.|... |... -....+.+..|+|+|.|
T Consensus 433 ~~~~q~~~~~~~rL~dil~~~~E~~~~~~----~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~S 508 (709)
T COG2274 433 WTDFQQAKVALERLGDILDTPPEQEGDKT----LIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRS 508 (709)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccc----cccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCC
Confidence 34566777777777664443344444332 3344444444444422 1111 12444678899999999
Q ss_pred CCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHH
Q psy11425 137 GAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKL 186 (672)
Q Consensus 137 GSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~ 186 (672)
|||||||++.|...+.+..-.+ ..||.|..-.+...+.+.
T Consensus 509 GsGKSTL~KLL~gly~p~~G~I----------~~dg~dl~~i~~~~lR~~ 548 (709)
T COG2274 509 GSGKSTLLKLLLGLYKPQQGRI----------LLDGVDLNDIDLASLRRQ 548 (709)
T ss_pred CCCHHHHHHHHhcCCCCCCceE----------EECCEeHHhcCHHHHHhh
Confidence 9999999999987763211111 245666666666666555
No 236
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.52 E-value=0.011 Score=53.45 Aligned_cols=21 Identities=43% Similarity=0.512 Sum_probs=19.6
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy11425 130 FIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 130 IvLtGpsGSGKSTLa~~L~e~ 150 (672)
|+|.|++|||||||.+.|...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999875
No 237
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.52 E-value=0.17 Score=55.50 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+..++|+||+|+||||+++.+.+..
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998874
No 238
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.49 E-value=0.0099 Score=54.17 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=20.5
Q ss_pred EEEeCCCCCChHHHHHHHHhcC
Q psy11425 130 FIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 130 IvLtGpsGSGKSTLa~~L~e~~ 151 (672)
|+|+||||+||||+++.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999999885
No 239
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.46 E-value=0.38 Score=47.11 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=21.2
Q ss_pred EEEEeCCCCCChHHHHHHHHhcC
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+|+|+|||||||||++..|...+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 68999999999999999998774
No 240
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.44 E-value=0.043 Score=55.42 Aligned_cols=122 Identities=16% Similarity=0.188 Sum_probs=58.7
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCC-------C--ceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhH
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDH-------K--IKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEV 198 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~-------~--~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~ 198 (672)
++++|.||+|+|||.++=.|.+.+. + .+.-...++-.|-+.|..|..-.|.+. ..+..|.+- -.++
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~----r~l~~G~i~-a~ea 76 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDD----RPLSDGIIN-AEEA 76 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES--------GGG-S---HHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeecc----ccccCCCcC-HHHH
Confidence 6899999999999999999988752 1 112223445455556666665555432 223333321 1111
Q ss_pred hccccCcchHHHHHHHhcCCeEEEEe-eHHHHHHHHHhCCC-----cEEEEEeCCCHHHHHHHHHHc
Q psy11425 199 HGNFYGTSFFPIVREIKSNVDILLEI-DFQGAKQIKKKFPN-----AIGIFILPPSLDSLKERLYKR 259 (672)
Q Consensus 199 ~g~~YGt~~~~I~~~l~~G~~vIldi-~~~g~~~l~~~~~~-----~~vIfI~~ps~e~l~~RL~~R 259 (672)
+... ...+.. +..++.+|+++ +...+..+.+.... ..++.+..|+.+....|..+|
T Consensus 77 ~~~L----i~~v~~-~~~~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~R 138 (233)
T PF01745_consen 77 HERL----ISEVNS-YSAHGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRR 138 (233)
T ss_dssp HHHH----HHHHHT-TTTSSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred HHHH----HHHHHh-ccccCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHH
Confidence 1111 111111 22367899996 55555555543321 234555667788888877766
No 241
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.38 E-value=0.013 Score=57.95 Aligned_cols=27 Identities=37% Similarity=0.610 Sum_probs=23.4
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..++-++.|+||||+||||+.+.|...
T Consensus 25 i~~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 25 IPKGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred ecCceEEEEECCCCCCHHHHHHHHHhh
Confidence 356779999999999999999998655
No 242
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.36 E-value=0.048 Score=57.56 Aligned_cols=85 Identities=16% Similarity=0.266 Sum_probs=49.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCC-c-eeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhcccc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHK-I-KLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFY 203 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~-~-~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~Y 203 (672)
..-.|.+|||.||||||-...+...... . .+.+ |. .|=++|.|.++..+-...+-|. .-
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIl--TI-------EDPIE~vh~skkslI~QREvG~----------dT 184 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHIL--TI-------EDPIEYVHESKKSLINQREVGR----------DT 184 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceE--Ee-------cCchHhhhcchHhhhhHHHhcc----------cH
Confidence 3458999999999999988877776421 1 1111 11 2234577766665433322111 11
Q ss_pred CcchHHHHHHHhcCCeEEEEeeHHHH
Q psy11425 204 GTSFFPIVREIKSNVDILLEIDFQGA 229 (672)
Q Consensus 204 Gt~~~~I~~~l~~G~~vIldi~~~g~ 229 (672)
..-....+..+.+.++||+.++..-.
T Consensus 185 ~sF~~aLraALReDPDVIlvGEmRD~ 210 (353)
T COG2805 185 LSFANALRAALREDPDVILVGEMRDL 210 (353)
T ss_pred HHHHHHHHHHhhcCCCEEEEeccccH
Confidence 11134566778888999998855433
No 243
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.35 E-value=0.25 Score=57.90 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.2
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+..+.++||+|+||||+++.|.+..
T Consensus 38 ~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 38 HHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998774
No 244
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.35 E-value=0.0097 Score=61.66 Aligned_cols=155 Identities=20% Similarity=0.354 Sum_probs=70.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC----CCceeecccccccCCCCCCCCcccccCCHHHHHHHH-HcCCchhHHhHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD----HKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQ-KSGKFLEWAEVHG 200 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~----~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i-~~g~fle~~~~~g 200 (672)
...+|+||||||+|||||...|...+ ..+....-+-+.+...|-.=|. +--|.... ..+-|+.--...|
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGD------RiRM~~~~~d~~vfIRS~atRG 101 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGD------RIRMQELSRDPGVFIRSMATRG 101 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--------GGGCHHHHTSTTEEEEEE---S
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccccc------HHHhcCcCCCCCEEEeecCcCC
Confidence 46799999999999999999987764 2333322233323222222222 22233322 2344554433344
Q ss_pred cccCcchHH--HHHHHh-cCCeEEE-EeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy11425 201 NFYGTSFFP--IVREIK-SNVDILL-EIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANK 276 (672)
Q Consensus 201 ~~YGt~~~~--I~~~l~-~G~~vIl-di~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~ 276 (672)
+.=|.+... +..+++ .|.++|+ +.---|--++.-...-..++++.+|. -|++- .. ++.
T Consensus 102 ~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg----------~GD~i-Q~----~Ka--- 163 (266)
T PF03308_consen 102 SLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPG----------LGDEI-QA----IKA--- 163 (266)
T ss_dssp SHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESS----------TCCCC-CT----B-T---
T ss_pred CCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCC----------CccHH-HH----Hhh---
Confidence 444443322 223344 4777554 32111212222233344556666662 33321 11 111
Q ss_pred HhhhcCCCcEEEEcC-C---HHHHHHHHHHHHHh
Q psy11425 277 EISYANKFDYIIINN-K---FSKALLQLKAIINA 306 (672)
Q Consensus 277 e~~~~~~~D~VI~Nd-d---le~a~~qL~~iI~~ 306 (672)
...+.+|.+++|. | -+.++.++...+.-
T Consensus 164 --GimEiaDi~vVNKaD~~gA~~~~~~l~~~l~l 195 (266)
T PF03308_consen 164 --GIMEIADIFVVNKADRPGADRTVRDLRSMLHL 195 (266)
T ss_dssp --THHHH-SEEEEE--SHHHHHHHHHHHHHHHHH
T ss_pred --hhhhhccEEEEeCCChHHHHHHHHHHHHHHhh
Confidence 1123489999998 5 56777777777753
No 245
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.35 E-value=0.13 Score=57.12 Aligned_cols=151 Identities=20% Similarity=0.231 Sum_probs=82.1
Q ss_pred HHHhcCCeEEEEe--eHHHH----HHHHHhCCCcEEEEEeCCCHHHHHHHHHH----cCCCCHHHH----HHHHHHHHHH
Q psy11425 212 REIKSNVDILLEI--DFQGA----KQIKKKFPNAIGIFILPPSLDSLKERLYK----RGQDKYDVI----SRRILSANKE 277 (672)
Q Consensus 212 ~~l~~G~~vIldi--~~~g~----~~l~~~~~~~~vIfI~~ps~e~l~~RL~~----Rg~~~~e~i----~~rl~~~~~e 277 (672)
.+...|+-+++.. .|..+ ..++.++.--.++-|.+|+.+.+..=|++ ++-.-++++ ..++.+...+
T Consensus 203 ~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvRe 282 (408)
T COG0593 203 ALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRE 282 (408)
T ss_pred HHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHH
Confidence 3444566666554 33333 34555554456788999998887765554 332222222 2233333332
Q ss_pred hhhc-----CCCcEEEEcCCHHHHHHHHHHHHHhcccccccccchhhhhhhhcchhHHH-----------------HHHH
Q psy11425 278 ISYA-----NKFDYIIINNKFSKALLQLKAIINANRCFMARVTIEDGLKKINNRFKLTL-----------------CAVY 335 (672)
Q Consensus 278 ~~~~-----~~~D~VI~Nddle~a~~qL~~iI~~~~~~m~r~~~~~~~~~~~~~y~l~~-----------------~~~~ 335 (672)
+.-. .+..+.=..-+.+-+.+-|..++.... . .+++++++.|-..|.+-+ .|.|
T Consensus 283 LegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~---~-itie~I~~~Va~~y~v~~~dl~s~~R~~~i~~~Rqiamy 358 (408)
T COG0593 283 LEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGE---K-ITIEDIQKIVAEYYNVKVSDLLSKSRTRNIVRPRQIAMY 358 (408)
T ss_pred HHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhcccc---c-CCHHHHHHHHHHHhCCCHHHhhccccccccchHHHHHHH
Confidence 2110 011111101245555555555555444 3 888888888888887322 4667
Q ss_pred HhhhhhcCCCcccccc--cCCCcchhhhhhhcC
Q psy11425 336 RARQLLKGHTKKIIGC--DNDKVTVIALREISH 366 (672)
Q Consensus 336 ~a~~~~~~~~~~~~~~--~~~k~~~~a~~~~~~ 366 (672)
=|||+.+-.-|.+... ..+-.|-+|.+-|..
T Consensus 359 L~r~lt~~Slp~IG~~FgrdHtTV~~a~~kI~~ 391 (408)
T COG0593 359 LARELTNLSLPEIGKAFGRDHTTVLHAVRKIEQ 391 (408)
T ss_pred HHHHHccCcHHHHHHHhCCCccHHHHHHHHHHH
Confidence 7888888887765532 455667777776653
No 246
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.32 E-value=0.014 Score=63.62 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=23.8
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...++++|+|||||||||+++.|....
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999998765
No 247
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.29 E-value=0.0086 Score=57.63 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=18.7
Q ss_pred EEEeCCCCCChHHHHHHHHhcC
Q psy11425 130 FIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 130 IvLtGpsGSGKSTLa~~L~e~~ 151 (672)
|+|+|++|+|||||++.|.+.+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~g 23 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAARG 23 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHcC
Confidence 8999999999999999999883
No 248
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.28 E-value=0.014 Score=57.53 Aligned_cols=25 Identities=44% Similarity=0.622 Sum_probs=22.1
Q ss_pred cccceEEEEeCCCCCChHHHHHHHH
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELL 148 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~ 148 (672)
...+.+++|+||+|||||||.+.+.
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3467899999999999999999884
No 249
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.28 E-value=0.015 Score=64.32 Aligned_cols=26 Identities=38% Similarity=0.272 Sum_probs=22.8
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+.+|+|+|++|||||||++.|....
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL 236 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLF 236 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999999999996554
No 250
>KOG0635|consensus
Probab=95.27 E-value=0.041 Score=52.35 Aligned_cols=36 Identities=36% Similarity=0.421 Sum_probs=28.8
Q ss_pred hhhhhccccccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 116 HELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 116 ~E~~~r~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+.+++....++-+|-|||-||||||||+-.|.+..
T Consensus 20 k~eRq~l~~qkGcviWiTGLSgSGKStlACaL~q~L 55 (207)
T KOG0635|consen 20 KEERQKLLKQKGCVIWITGLSGSGKSTLACALSQAL 55 (207)
T ss_pred HHHHHHHhcCCCcEEEEeccCCCCchhHHHHHHHHH
Confidence 344555666788999999999999999998886653
No 251
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.26 E-value=0.13 Score=60.86 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+..++|+|++|+||||+++.|.+..
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998875
No 252
>KOG2702|consensus
Probab=95.24 E-value=0.011 Score=59.76 Aligned_cols=130 Identities=18% Similarity=0.097 Sum_probs=68.2
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCCC----cee-ecccccccCCCCCCCCcccc------c---------------
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDHK----IKL-SISTTTRPMRPGEKNGREYY------F--------------- 177 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~----~~~-~v~~TTR~~r~~E~~G~dY~------f--------------- 177 (672)
+.....++|.|++|+||||++..+...+|. |.. ++.... --.++|.+|. |
T Consensus 116 ~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iai----ivPMDGFHlsr~~LD~f~dP~~AharRGapwT 191 (323)
T KOG2702|consen 116 SNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAI----IVPMDGFHLSRRCLDLFKDPQTAHARRGAPWT 191 (323)
T ss_pred ccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeE----EecccchhhhHHHHHhhcChHHHHhhcCCCcc
Confidence 455679999999999999999999887641 111 010000 0013344332 1
Q ss_pred CCHHHHHHHHHc----CCchhHHhHhccccCcchHHHHHHHhcCCeEEEEeeHHHH-----HHHHHhCCCcEEEEEeCCC
Q psy11425 178 TNIDNFKKLQKS----GKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGA-----KQIKKKFPNAIGIFILPPS 248 (672)
Q Consensus 178 vs~~~F~~~i~~----g~fle~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~-----~~l~~~~~~~~vIfI~~ps 248 (672)
.+...|.+..+- ..---|....++-.|.+..+-.-+-...+++|+++++-.+ +.+-+.+ +.. +||...
T Consensus 192 FD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~-d~k-~~idV~- 268 (323)
T KOG2702|consen 192 FDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTL-DDK-YKIDVD- 268 (323)
T ss_pred cCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHh-hhh-eecccc-
Confidence 133444443320 1101122233444555543322223347888888766443 2333322 222 677654
Q ss_pred HHHHHHHHHHcC
Q psy11425 249 LDSLKERLYKRG 260 (672)
Q Consensus 249 ~e~l~~RL~~Rg 260 (672)
.+..++|...|-
T Consensus 269 ~~~a~~RVa~RH 280 (323)
T KOG2702|consen 269 YEAAEERVAKRH 280 (323)
T ss_pred HHHHHHHHHHHh
Confidence 888899988873
No 253
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.21 E-value=0.016 Score=56.30 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=23.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
|.+++.++|+++||||||+..|....
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L 26 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKL 26 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHH
Confidence 56899999999999999999987664
No 254
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.16 E-value=0.016 Score=57.25 Aligned_cols=28 Identities=32% Similarity=0.374 Sum_probs=24.5
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.|....
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999997764
No 255
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.14 E-value=0.016 Score=58.40 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 256
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.13 E-value=0.018 Score=53.90 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
...|+++|++||||||+.+.|...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999765
No 257
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.13 E-value=0.45 Score=53.74 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.4
Q ss_pred eEEEEeCCCCCChHHHHHHHHhc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..++|.||+|+|||+|++.+...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~ 164 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHA 164 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999999988764
No 258
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.13 E-value=0.021 Score=59.42 Aligned_cols=53 Identities=26% Similarity=0.205 Sum_probs=35.9
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCC-CceeecccccccCCCCCCCCcccccCCHHHHHHHH
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQ 187 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i 187 (672)
.+.+.+++|.||.|||||||.+.|....+ .-+.+ ..+|.+.+-.+..++.+.+
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V-----------~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV-----------LLDGKDIASLSPKELAKKL 78 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEE-----------EECCCchhhcCHHHHhhhE
Confidence 35689999999999999999999987652 11111 2345555555566665553
No 259
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.12 E-value=0.014 Score=54.15 Aligned_cols=27 Identities=41% Similarity=0.538 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||.+.|....
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 467899999999999999999998775
No 260
>PLN02796 D-glycerate 3-kinase
Probab=95.10 E-value=0.023 Score=61.48 Aligned_cols=50 Identities=30% Similarity=0.244 Sum_probs=32.0
Q ss_pred hCCCccchhHHhhhhhhh-hccccccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 102 AKPMATLSLEAQQRHELK-KKSFKSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 102 a~P~a~~C~~c~~~~E~~-~r~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+|.+..|..-....-.. +.-....+.+|+|+|++||||||+++.|....
T Consensus 74 ~~P~~~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 74 YLPVYLWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred HcCcHHHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 456665554433322111 11111346799999999999999999998765
No 261
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.08 E-value=0.018 Score=57.83 Aligned_cols=27 Identities=37% Similarity=0.489 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998764
No 262
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=95.07 E-value=0.03 Score=65.00 Aligned_cols=54 Identities=30% Similarity=0.336 Sum_probs=37.4
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHH
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQ 187 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i 187 (672)
.+++..++|+|||||||||+++.|...++...-.+ -.+|.+..-.+.+...+.+
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I----------~idg~dI~~i~~~~lr~~I 405 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEI----------LIDGIDIRDISLDSLRKRI 405 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE----------EECCEehhhcCHHHHHHhc
Confidence 45688999999999999999999988764211111 1246666666666665554
No 263
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.06 E-value=0.018 Score=52.42 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=23.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++.++|+||+|+||||+++.+....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998874
No 264
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.06 E-value=0.019 Score=57.62 Aligned_cols=27 Identities=44% Similarity=0.726 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998765
No 265
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.06 E-value=0.017 Score=59.19 Aligned_cols=27 Identities=37% Similarity=0.405 Sum_probs=24.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+-.++|+|+||||||||++.|+-..
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 467899999999999999999997764
No 266
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.04 E-value=0.032 Score=57.13 Aligned_cols=28 Identities=39% Similarity=0.433 Sum_probs=24.6
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+++.+.+|+|||||||||+.+.+.-..
T Consensus 31 V~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 31 VPRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred ecCCcEEEEECCCCcCHHHHHHHHhccC
Confidence 3578999999999999999999987664
No 267
>KOG3078|consensus
Probab=95.03 E-value=0.19 Score=51.63 Aligned_cols=38 Identities=26% Similarity=0.268 Sum_probs=28.8
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTR 163 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR 163 (672)
++.-.+++|++||||+|++.++.+.+...+.+..+.-|
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr 51 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLR 51 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHH
Confidence 35578999999999999999999998654444433333
No 268
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.032 Score=56.75 Aligned_cols=66 Identities=23% Similarity=0.338 Sum_probs=44.0
Q ss_pred hhccccccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhH
Q psy11425 119 KKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEW 195 (672)
Q Consensus 119 ~~r~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~ 195 (672)
.-+.....+-+.+|+||.|||||||+..|+-. |.|...-... -.+|.+....++++ ..+.|-|+-|
T Consensus 22 gvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~-p~Y~Vt~G~I-------~~~GedI~~l~~~E---RAr~GifLaf 87 (251)
T COG0396 22 GVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH-PKYEVTEGEI-------LFDGEDILELSPDE---RARAGIFLAF 87 (251)
T ss_pred CcceeEcCCcEEEEECCCCCCHHHHHHHHhCC-CCceEecceE-------EECCcccccCCHhH---HHhcCCEEee
Confidence 33455667889999999999999999999776 4443322111 13466665555543 4566777776
No 269
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.01 E-value=0.27 Score=56.75 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=22.2
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+..++++||+|+||||+++.|.+..
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 38 HHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998774
No 270
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.00 E-value=0.02 Score=57.70 Aligned_cols=27 Identities=48% Similarity=0.596 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 467899999999999999999998765
No 271
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.98 E-value=0.019 Score=58.01 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=24.5
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..++.+++|+||+|||||||.+.|....
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999997664
No 272
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.98 E-value=0.02 Score=65.71 Aligned_cols=30 Identities=37% Similarity=0.285 Sum_probs=25.9
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
...++..++|+||||||||||++.|...++
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345788999999999999999999987753
No 273
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.98 E-value=0.018 Score=56.73 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 567899999999999999999998764
No 274
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.98 E-value=0.021 Score=57.42 Aligned_cols=27 Identities=37% Similarity=0.589 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998764
No 275
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=94.97 E-value=0.016 Score=54.78 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=21.7
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+..|+|+|.+|+||||+.+.|....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~ 26 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEE 26 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcc
Confidence 3469999999999999999997763
No 276
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=94.97 E-value=0.068 Score=64.51 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=23.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+++++|.||||+||||+++.|.+..
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998875
No 277
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.96 E-value=0.022 Score=58.28 Aligned_cols=28 Identities=39% Similarity=0.513 Sum_probs=24.7
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||++.|....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999998765
No 278
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.96 E-value=0.018 Score=62.19 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=24.3
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+-+++|.|||||||||+.+.++-..
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999997654
No 279
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.95 E-value=0.022 Score=57.14 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=24.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998764
No 280
>KOG0056|consensus
Probab=94.92 E-value=0.018 Score=63.98 Aligned_cols=54 Identities=24% Similarity=0.267 Sum_probs=38.5
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHH
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQ 187 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i 187 (672)
.++++.|+|+||||+||||+++.|.+.+.--.-++ ..||.|..-++.....+.+
T Consensus 561 v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI----------~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 561 VQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSI----------TIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred ecCCcEEEEECCCCCchhHHHHHHHHHhhccCceE----------EEcCchHHHHHHHHHHHhc
Confidence 35689999999999999999999987753111111 4667777777666665553
No 281
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.91 E-value=0.036 Score=58.84 Aligned_cols=53 Identities=28% Similarity=0.317 Sum_probs=35.8
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHH
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKL 186 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~ 186 (672)
...+.|++|+|-||||||||.+.|-...+.-.-. -..+|.|..-.++.+....
T Consensus 51 v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~----------ilv~g~di~~~~~~~Lr~~ 103 (386)
T COG4175 51 VEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGE----------ILVDGKDIAKLSAAELREL 103 (386)
T ss_pred ecCCeEEEEEecCCCCHHHHHHHHhccCCCCCce----------EEECCcchhcCCHHHHHHH
Confidence 3467899999999999999999986654211101 1345667666677665533
No 282
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.91 E-value=0.38 Score=56.44 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.5
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+..++++||+|+||||+++.|.+..
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999999998874
No 283
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.89 E-value=0.024 Score=57.03 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=24.6
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.|....
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999998765
No 284
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.88 E-value=0.024 Score=57.26 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 285
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.87 E-value=0.021 Score=57.12 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998764
No 286
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.86 E-value=0.02 Score=57.58 Aligned_cols=27 Identities=41% Similarity=0.589 Sum_probs=24.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999999997664
No 287
>PTZ00202 tuzin; Provisional
Probab=94.86 E-value=0.11 Score=57.81 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=23.7
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
.+++++|+|++|+||||+++.+....+
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456999999999999999999987754
No 288
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.86 E-value=0.021 Score=57.78 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998764
No 289
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.85 E-value=0.022 Score=57.90 Aligned_cols=27 Identities=41% Similarity=0.564 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||.+.|....
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999998764
No 290
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.85 E-value=0.13 Score=53.93 Aligned_cols=113 Identities=17% Similarity=0.142 Sum_probs=59.8
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCce-eecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIK-LSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYG 204 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~-~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YG 204 (672)
...+|+|+|++||||||+++.|....+... ..+ |--.+.+....|... ++..+..+.
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~~~~~~ii--tiEdp~E~~~~~~~q-----------------~~v~~~~~~--- 136 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELNTPEKNII--TVEDPVEYQIPGINQ-----------------VQVNEKAGL--- 136 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEE--EECCCceecCCCceE-----------------EEeCCcCCc---
Confidence 445899999999999999998877653211 111 111111111111100 000000111
Q ss_pred cchHHHHHHHhcCCeEEEEeeH---HHHHHHHHh--CCCcEEEEEeCCCHHHHHHHHHHcC
Q psy11425 205 TSFFPIVREIKSNVDILLEIDF---QGAKQIKKK--FPNAIGIFILPPSLDSLKERLYKRG 260 (672)
Q Consensus 205 t~~~~I~~~l~~G~~vIldi~~---~g~~~l~~~--~~~~~vIfI~~ps~e~l~~RL~~Rg 260 (672)
+..+.+...+..++++|+.++. +.+..+.+. .+...+--+.+.|......||..-+
T Consensus 137 ~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~tGh~v~tTlHa~~~~~ai~Rl~~~~ 197 (264)
T cd01129 137 TFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAALTGHLVLSTLHTNDAPGAITRLLDMG 197 (264)
T ss_pred CHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHHcCCcEEEEeccCCHHHHHHHHHHhC
Confidence 1234566677788888888744 333322221 1233334467788888888887644
No 291
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.84 E-value=0.024 Score=56.85 Aligned_cols=27 Identities=37% Similarity=0.577 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 292
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.83 E-value=0.022 Score=58.36 Aligned_cols=27 Identities=41% Similarity=0.466 Sum_probs=24.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||++.|....
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999999998664
No 293
>PF05729 NACHT: NACHT domain
Probab=94.83 E-value=0.02 Score=54.11 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=21.4
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
++++|+|++|+||||++..+....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 579999999999999999988764
No 294
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.83 E-value=0.024 Score=57.86 Aligned_cols=29 Identities=41% Similarity=0.475 Sum_probs=25.1
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
...+.+++|+||+|||||||.+.|....+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34678999999999999999999987653
No 295
>PF13245 AAA_19: Part of AAA domain
Probab=94.83 E-value=0.026 Score=47.74 Aligned_cols=24 Identities=29% Similarity=0.653 Sum_probs=17.6
Q ss_pred cceEEEEeCCCCCChH-HHHHHHHh
Q psy11425 126 FGNIFIISAPSGAGKS-TLVNELLK 149 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKS-TLa~~L~e 149 (672)
...+++|.|||||||| |+++.+..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999 44444433
No 296
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.82 E-value=0.023 Score=57.23 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=24.4
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+..++.+|+||||+||||+.+.|-.+.
T Consensus 30 i~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 30 IPKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred ccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 3467899999999999999999997765
No 297
>KOG0058|consensus
Probab=94.81 E-value=0.03 Score=65.15 Aligned_cols=30 Identities=33% Similarity=0.431 Sum_probs=26.2
Q ss_pred cccccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 122 SFKSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 122 ~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
....++++++|+|||||||||+++.|.+.|
T Consensus 489 fti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 489 FTIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 444578899999999999999999998876
No 298
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.81 E-value=0.022 Score=58.41 Aligned_cols=28 Identities=39% Similarity=0.470 Sum_probs=24.4
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.|....
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3467899999999999999999997664
No 299
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.80 E-value=0.025 Score=57.16 Aligned_cols=27 Identities=44% Similarity=0.513 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998764
No 300
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.79 E-value=0.086 Score=61.24 Aligned_cols=153 Identities=18% Similarity=0.200 Sum_probs=72.8
Q ss_pred HHHhcCCeEEEEeeH--HHH----HHHHHhCCCcEEEEEeCCCHHHHHHHHH----HcCCC-CHHHHHH---HHHHHHHH
Q psy11425 212 REIKSNVDILLEIDF--QGA----KQIKKKFPNAIGIFILPPSLDSLKERLY----KRGQD-KYDVISR---RILSANKE 277 (672)
Q Consensus 212 ~~l~~G~~vIldi~~--~g~----~~l~~~~~~~~vIfI~~ps~e~l~~RL~----~Rg~~-~~e~i~~---rl~~~~~e 277 (672)
...+.|+.+|+-.+. ..+ ..++..+..-.++-|.+|+.+.+..-|. .|+-. +++.+.- ++.+...+
T Consensus 405 ~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~ 484 (617)
T PRK14086 405 TLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRE 484 (617)
T ss_pred HHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHH
Confidence 334456666665432 222 3455555556678899998877766555 34332 3333322 22222222
Q ss_pred hhh--cCCCcEEE-EcC--CHHHHHHHHHHHHHhcccccccccchhhhhhhhcchhHHHH-----------------HHH
Q psy11425 278 ISY--ANKFDYII-INN--KFSKALLQLKAIINANRCFMARVTIEDGLKKINNRFKLTLC-----------------AVY 335 (672)
Q Consensus 278 ~~~--~~~~D~VI-~Nd--dle~a~~qL~~iI~~~~~~m~r~~~~~~~~~~~~~y~l~~~-----------------~~~ 335 (672)
+.. .....+.. .|. +++.+..-|..++... .....+++++++.|-..|.+-.- |.|
T Consensus 485 LegaL~rL~a~a~~~~~~itl~la~~vL~~~~~~~--~~~~it~d~I~~~Va~~f~v~~~dl~s~~R~~~i~~aRqiAMY 562 (617)
T PRK14086 485 LEGALIRVTAFASLNRQPVDLGLTEIVLRDLIPED--SAPEITAAAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMY 562 (617)
T ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccc--cCCcCCHHHHHHHHHHHhCCCHHHHhCCCCCcccchHHHHHHH
Confidence 211 01111111 222 3444444444443321 23356788888888887774433 334
Q ss_pred HhhhhhcCCCcccccc--cCCCcchhhhhhhcC
Q psy11425 336 RARQLLKGHTKKIIGC--DNDKVTVIALREISH 366 (672)
Q Consensus 336 ~a~~~~~~~~~~~~~~--~~~k~~~~a~~~~~~ 366 (672)
-+|++..-.-+.+... .++-.|.+|.+-|..
T Consensus 563 L~r~lt~~Sl~~IG~~FgRdHSTV~~A~~kI~~ 595 (617)
T PRK14086 563 LCRELTDLSLPKIGQQFGRDHTTVMHADRKIRA 595 (617)
T ss_pred HHHHHcCCCHHHHHHHhCCChhHHHHHHHHHHH
Confidence 4444444333322211 455666677666655
No 301
>KOG0734|consensus
Probab=94.78 E-value=0.15 Score=57.48 Aligned_cols=338 Identities=17% Similarity=0.191 Sum_probs=163.0
Q ss_pred CcchhhhhhhC--CCccchhHHhhhhhhhhccccc----------cceEEEEeCCCCCChHHHHHHHHhcCCCceeeccc
Q psy11425 93 EPIGILRLLAK--PMATLSLEAQQRHELKKKSFKS----------FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSIST 160 (672)
Q Consensus 93 e~Ip~~RL~a~--P~a~~C~~c~~~~E~~~r~~~~----------~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~ 160 (672)
+++.+++...+ -.+.-|-+.++..|..-..... -|+=|.|+||||.|||-|++...-.
T Consensus 291 ~ev~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE---------- 360 (752)
T KOG0734|consen 291 SEVDPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE---------- 360 (752)
T ss_pred cccChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc----------
Confidence 66666665433 3345577777665554222211 2566999999999999999988543
Q ss_pred ccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcE
Q psy11425 161 TTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAI 240 (672)
Q Consensus 161 TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~ 240 (672)
.|+.++|.+-.+|+.++ -|.-...|+..++. .+. .-|+
T Consensus 361 ----------A~VPFF~~sGSEFdEm~---------------VGvGArRVRdLF~a---------------Ak~--~APc 398 (752)
T KOG0734|consen 361 ----------AGVPFFYASGSEFDEMF---------------VGVGARRVRDLFAA---------------AKA--RAPC 398 (752)
T ss_pred ----------cCCCeEeccccchhhhh---------------hcccHHHHHHHHHH---------------HHh--cCCe
Confidence 24556666667777764 12223334433322 222 2577
Q ss_pred EEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh-hhcCCCcEEEEcC-CHHHHHHHHHHHHHhcccc----cccc
Q psy11425 241 GIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEI-SYANKFDYIIINN-KFSKALLQLKAIINANRCF----MARV 314 (672)
Q Consensus 241 vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~-~~~~~~D~VI~Nd-dle~a~~qL~~iI~~~~~~----m~r~ 314 (672)
+|||+--+ -+ =.+|...+....++-+++-.-|+ .|.+.--+||+.. |.-+++++- +++-.+|- ...|
T Consensus 399 IIFIDEiD--av---G~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~A--L~RPGRFD~~v~Vp~P 471 (752)
T KOG0734|consen 399 IIFIDEID--AV---GGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKA--LTRPGRFDRHVTVPLP 471 (752)
T ss_pred EEEEechh--hh---cccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHH--hcCCCccceeEecCCC
Confidence 88987431 11 11343322233444455544455 4444445555544 655555442 23322322 3333
Q ss_pred cchhhhhhhhcchhHHHHHHHHhhhhhcCCCcccccccCCCcch--hhhhhhcCcCcc-ccchHHHHHHHHH-HHHHHhh
Q psy11425 315 TIEDGLKKINNRFKLTLCAVYRARQLLKGHTKKIIGCDNDKVTV--IALREISHGKIG-VEIRLAIWQAEYV-RKKIIEL 390 (672)
Q Consensus 315 ~~~~~~~~~~~~y~l~~~~~~~a~~~~~~~~~~~~~~~~~k~~~--~a~~~~~~~~v~-r~S~LAl~Q~~~v-~~~l~~~ 390 (672)
.| |=+.-++-+| -+..|.+ .=+.-|+.|..+ -|--||= +| +.+|++.
T Consensus 472 Dv---------~GR~eIL~~y----------------l~ki~~~~~VD~~iiARGT~GFsGAdLaN----lVNqAAlkAa 522 (752)
T KOG0734|consen 472 DV---------RGRTEILKLY----------------LSKIPLDEDVDPKIIARGTPGFSGADLAN----LVNQAALKAA 522 (752)
T ss_pred Cc---------ccHHHHHHHH----------------HhcCCcccCCCHhHhccCCCCCchHHHHH----HHHHHHHHHH
Confidence 33 1111122222 2222222 224557777777 6766752 22 2334443
Q ss_pred CCC-ceEEEEeeccCCccccCCcccccCcccccHHHHHHHH----HcCCccEEEeeCCCCCCCCCCCeEEEEecCCCCCC
Q psy11425 391 YPW-CKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAI----IKGKADLAVHSLKDIPMNLPSGFILCAILKREDPR 465 (672)
Q Consensus 391 ~p~-~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aL----l~~~~D~aVHSlKD~p~~~~~gl~i~a~~~R~d~~ 465 (672)
--+ ..+........-|+++--|- -|+.|..|=-.-+ -.|.+=+|.|.=--+|-. =+-|.||...-
T Consensus 523 ~dga~~VtM~~LE~akDrIlMG~E----Rks~~i~~eak~~TAyHE~GHAivA~yTk~A~Plh------KaTImPRG~sL 592 (752)
T KOG0734|consen 523 VDGAEMVTMKHLEFAKDRILMGPE----RKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLH------KATIMPRGPSL 592 (752)
T ss_pred hcCcccccHHHHhhhhhheeeccc----ccccccChhhhhhhhhhccCceEEEeecCCCcccc------ceeeccCCccc
Confidence 222 34556666677787754332 3677765532222 134444444443333321 12333333210
Q ss_pred ceEEecCCCCCcCCCCCCeeecCcHHHHHHHHHhCCCCeEEcccCCHHHHH----hhhcCCC----CCEeehhHhhHhhc
Q psy11425 466 DAFISNDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRL----NKLDKGE----YAAIILAAAGLKRL 537 (672)
Q Consensus 466 D~lv~~~~~~~~~lp~~~~iGTsS~RR~~ql~~~~p~~~~~~iRGNv~tRl----~kl~~g~----~daiilA~Agl~Rl 537 (672)
- --..||+.-. +|=.| +|++... . +.+-|-|..-| .|+-+|- =.|.=+|.+=+.-.
T Consensus 593 G--------~t~~LPe~D~--~~~Tk--~q~LA~l---D-V~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~f 656 (752)
T KOG0734|consen 593 G--------HTSQLPEKDR--YSITK--AQLLARL---D-VCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKF 656 (752)
T ss_pred c--------ceeecCccch--hhHHH--HHHHHHH---H-HhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHc
Confidence 0 0134555433 22233 3333321 1 22445554433 2344442 23666777777888
Q ss_pred CCCCcee
Q psy11425 538 NLQKRIR 544 (672)
Q Consensus 538 ~~~~~~~ 544 (672)
||++.+.
T Consensus 657 GMSd~vG 663 (752)
T KOG0734|consen 657 GMSDKVG 663 (752)
T ss_pred Ccccccc
Confidence 8887764
No 302
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.78 E-value=0.027 Score=55.20 Aligned_cols=27 Identities=37% Similarity=0.570 Sum_probs=24.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||++.|....
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998664
No 303
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.78 E-value=0.024 Score=57.82 Aligned_cols=27 Identities=37% Similarity=0.410 Sum_probs=24.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999999997664
No 304
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.77 E-value=0.034 Score=64.82 Aligned_cols=52 Identities=29% Similarity=0.311 Sum_probs=35.3
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHH
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKL 186 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~ 186 (672)
..++..++|+|+||||||||++.|...+|.-+.. -.+|.+..-.+.+.+.+.
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I-----------~i~g~~i~~~~~~~lr~~ 424 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSL-----------KINGIELRELDPESWRKH 424 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEE-----------EECCEecccCCHHHHHhh
Confidence 3578899999999999999999997765321111 134555555555555544
No 305
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.76 E-value=0.019 Score=56.07 Aligned_cols=22 Identities=32% Similarity=0.717 Sum_probs=19.1
Q ss_pred EEEeCCCCCChHHHHHHHHhcC
Q psy11425 130 FIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 130 IvLtGpsGSGKSTLa~~L~e~~ 151 (672)
|+|||+||+||||+++.+.+..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999987764
No 306
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.76 E-value=0.023 Score=58.01 Aligned_cols=27 Identities=41% Similarity=0.506 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998765
No 307
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.75 E-value=0.022 Score=57.04 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=20.7
Q ss_pred EEEEeCCCCCChHHHHHHHHhcC
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+|+|+||+||||||+++.|....
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999887665
No 308
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=94.74 E-value=0.14 Score=52.36 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=22.0
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.....+|+++|.||.|||++++.|.+..
T Consensus 9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL 36 (222)
T PF01591_consen 9 HAGKLVIVMVGLPARGKSYIARKLCRYL 36 (222)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999998764
No 309
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.74 E-value=0.026 Score=57.14 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=24.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 310
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.73 E-value=0.024 Score=57.35 Aligned_cols=27 Identities=33% Similarity=0.388 Sum_probs=24.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457899999999999999999998764
No 311
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.72 E-value=0.025 Score=56.82 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=24.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++.+++|+||+|||||||.+.|....
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998775
No 312
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.70 E-value=0.025 Score=55.66 Aligned_cols=42 Identities=36% Similarity=0.438 Sum_probs=29.6
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC-CCce----eecccccccCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD-HKIK----LSISTTTRPMR 166 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~-~~~~----~~v~~TTR~~r 166 (672)
..+.++.|+|||||||||+.+.+.-.. |..+ .-..||..+|.
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~ 69 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA 69 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc
Confidence 346799999999999999999887653 4222 22356665553
No 313
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.70 E-value=0.02 Score=52.43 Aligned_cols=26 Identities=38% Similarity=0.681 Sum_probs=19.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+++|+|++|+|||++++.+.+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998874
No 314
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.67 E-value=0.026 Score=57.11 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=24.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||.+.|....
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999998764
No 315
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.67 E-value=0.029 Score=55.95 Aligned_cols=27 Identities=37% Similarity=0.513 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998765
No 316
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.66 E-value=0.028 Score=53.22 Aligned_cols=28 Identities=29% Similarity=0.302 Sum_probs=24.6
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+|++|||||||.+.|....
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3467899999999999999999997765
No 317
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.65 E-value=0.046 Score=55.90 Aligned_cols=27 Identities=44% Similarity=0.554 Sum_probs=23.8
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+.+-+|+|.|+||||||||.+.|....
T Consensus 28 ~~GE~VaiIG~SGaGKSTLLR~lngl~ 54 (258)
T COG3638 28 NQGEMVAIIGPSGAGKSTLLRSLNGLV 54 (258)
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhccc
Confidence 457799999999999999999997754
No 318
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.64 E-value=0.031 Score=54.46 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999997765
No 319
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.64 E-value=0.027 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEeCCCCCChHHHHHHHHhcC
Q psy11425 130 FIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 130 IvLtGpsGSGKSTLa~~L~e~~ 151 (672)
|+|+|++|||||||.+.|....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998774
No 320
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.60 E-value=0.49 Score=54.34 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+..+.++||+|+||||+++.|.+..
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998875
No 321
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.60 E-value=0.029 Score=53.68 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=21.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+..|+++|+||+|||||.+.|....
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~ 126 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKK 126 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCC
Confidence 4568899999999999999997653
No 322
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.60 E-value=0.027 Score=55.87 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=23.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.+++|+||+|||||||.+.|...
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999754
No 323
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.60 E-value=0.027 Score=57.64 Aligned_cols=27 Identities=37% Similarity=0.491 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||++.|....
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999999998764
No 324
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.58 E-value=0.027 Score=57.75 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 325
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.57 E-value=0.44 Score=56.22 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=22.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+..++|+||+|+||||+++.|.+..
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4679999999999999999998864
No 326
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.55 E-value=0.034 Score=54.58 Aligned_cols=27 Identities=44% Similarity=0.513 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++.+++|+||+|||||||.+.|....
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999997765
No 327
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.55 E-value=0.16 Score=58.06 Aligned_cols=25 Identities=32% Similarity=0.680 Sum_probs=22.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.+.+|+|+||+|+||||++..|...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999998764
No 328
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.55 E-value=0.031 Score=56.79 Aligned_cols=27 Identities=37% Similarity=0.452 Sum_probs=24.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999999998765
No 329
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.54 E-value=0.028 Score=58.49 Aligned_cols=28 Identities=32% Similarity=0.525 Sum_probs=24.7
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.|....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999998765
No 330
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=94.54 E-value=0.055 Score=69.51 Aligned_cols=31 Identities=23% Similarity=0.189 Sum_probs=26.4
Q ss_pred cccccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 122 SFKSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 122 ~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
....++..++|+|+||||||||++.|...++
T Consensus 1189 l~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd 1219 (1466)
T PTZ00265 1189 FSCDSKKTTAIVGETGSGKSTVMSLLMRFYD 1219 (1466)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3345788999999999999999999988764
No 331
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.54 E-value=0.029 Score=57.17 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=24.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||.+.|....
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998764
No 332
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=94.53 E-value=0.031 Score=56.78 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=24.4
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||++.|....
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 3467899999999999999999997664
No 333
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.53 E-value=0.03 Score=56.21 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=22.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+ +++|+||+|||||||.+.|....
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 46 99999999999999999998764
No 334
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.53 E-value=0.028 Score=57.59 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=23.6
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.+++|+||+|||||||.+.|...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999776
No 335
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.53 E-value=0.023 Score=55.03 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=18.5
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...++.++|+|++|+|||++.+.+....
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456899999999999999999887764
No 336
>KOG3580|consensus
Probab=94.52 E-value=0.21 Score=56.34 Aligned_cols=214 Identities=18% Similarity=0.114 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHhhccccCC-------CCCcCccCCcchhhh--hhhCCCccchhHHhhhhhhhhccccccceEEEEeCC
Q psy11425 65 RERKLLIKIQQSIINIDKKE-------YGWCKDTGEPIGILR--LLAKPMATLSLEAQQRHELKKKSFKSFGNIFIISAP 135 (672)
Q Consensus 65 ~~~~~l~~i~~Al~ri~~gt-------yG~C~~Cge~Ip~~R--L~a~P~a~~C~~c~~~~E~~~r~~~~~~kiIvLtGp 135 (672)
...++|+.+++|+.....|. -|.-....+..-..| |.|+|-.+.- -.||++--....+.+.|+|.||
T Consensus 564 sRAEQlASvq~aqr~~agGdRAdFWR~RGlRsg~KknlrkSREDLsA~~vqtkf----PaYERVvLREAgFkRPVvifGP 639 (1027)
T KOG3580|consen 564 SRAEQLASVQNAQRDNAGGDRADFWRMRGLRSGVKKNLRKSREDLSAVVVQTKF----PAYERVVLREAGFKRPVVIFGP 639 (1027)
T ss_pred cHHHHHHHHHhhccccccchHHHHHHHhhhhhhhhhhhhhhhhhhhhceecccC----CchhhhhhhhhcccCceEEecc
Confidence 34456777788877655441 122222223332222 4455422221 2366665555566788999999
Q ss_pred CCCChHHHHHHHHhcCCC-ceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchHHHHHHH
Q psy11425 136 SGAGKSTLVNELLKKDHK-IKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIVREI 214 (672)
Q Consensus 136 sGSGKSTLa~~L~e~~~~-~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~~I~~~l 214 (672)
.+ .--+..|....|. |..+- | .+|.. |.+ ++..+ +...+++.++
T Consensus 640 iA---DiAmeKLa~E~PD~fqiAk---t-eprda---g~~-------------~stg~------------irL~Tvrqii 684 (1027)
T KOG3580|consen 640 IA---DIAMEKLANELPDWFQIAK---T-EPRDA---GSE-------------KSTGV------------IRLNTVRQII 684 (1027)
T ss_pred HH---HHHHHHHhhhCcchhhhhc---c-ccccC---Ccc-------------cccce------------EEehhhHHHH
Confidence 73 4455566666553 22221 1 11111 111 00011 1234677889
Q ss_pred hcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH-hhhcCCCcEEEEcCC
Q psy11425 215 KSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQD-KYDVISRRILSANKE-ISYANKFDYIIINNK 292 (672)
Q Consensus 215 ~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~-~~e~i~~rl~~~~~e-~~~~~~~D~VI~Ndd 292 (672)
++.+..++|++|..+..+.-..-++++||+.|.|..-+.. +++|-.- +.....+-..++... ....|.|..+|.-|+
T Consensus 685 eqDKHALLDVTP~AvdrLNY~QwypIVvff~PdSrqgvkt-mRqrL~P~Sr~SsRkLy~~a~KL~K~~~HLFTaTInLNs 763 (1027)
T KOG3580|consen 685 EQDKHALLDVTPKAVDRLNYTQWYPIVVFFNPDSRQGVKT-MRQRLAPTSRKSSRKLYDQANKLKKTCAHLFTATINLNS 763 (1027)
T ss_pred hcccchhhccCHHHHhhhccceeeeEEEEeCCcchHHHHH-HHHHhCcccchhHHHHHHHHHHHhhhchhheEeeeccCC
Confidence 9999999999999998887666689999999887644322 3333221 112222222222222 245578998887664
Q ss_pred -HHHHHHHHHHHHHhcccccccccchh
Q psy11425 293 -FSKALLQLKAIINANRCFMARVTIED 318 (672)
Q Consensus 293 -le~a~~qL~~iI~~~~~~m~r~~~~~ 318 (672)
.+.-|..|+.+|...+-+..|++-++
T Consensus 764 ~nD~Wyg~LK~~iq~QQ~~~vWvsEgk 790 (1027)
T KOG3580|consen 764 ANDSWYGSLKDTIQHQQGEAVWVSEGK 790 (1027)
T ss_pred CChhHHHHHHHHHHHhcCceeEeeccc
Confidence 67888999999987776666655443
No 337
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=94.52 E-value=0.035 Score=66.02 Aligned_cols=30 Identities=40% Similarity=0.493 Sum_probs=26.0
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
...++..++|+|+||||||||++.|...++
T Consensus 475 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~ 504 (686)
T TIGR03797 475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFET 504 (686)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 335688999999999999999999988763
No 338
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.52 E-value=0.03 Score=55.87 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+||||||+.+.|....
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999997764
No 339
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.51 E-value=0.03 Score=57.02 Aligned_cols=28 Identities=36% Similarity=0.471 Sum_probs=24.5
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..++.+++|+||+|||||||.+.|....
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3467899999999999999999998764
No 340
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.50 E-value=0.029 Score=56.58 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 468899999999999999999998764
No 341
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.49 E-value=0.033 Score=56.69 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||++.|....
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 342
>PRK00089 era GTPase Era; Reviewed
Probab=94.49 E-value=0.03 Score=59.22 Aligned_cols=39 Identities=31% Similarity=0.322 Sum_probs=27.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeeccccccc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRP 164 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~ 164 (672)
+.-+|+|+|++|||||||.+.|...........+.|||.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~ 42 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRH 42 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccc
Confidence 345899999999999999999986532222334455543
No 343
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.48 E-value=0.03 Score=57.54 Aligned_cols=27 Identities=26% Similarity=0.493 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++.+++|+||+|||||||.+.|....
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998764
No 344
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=94.48 E-value=0.029 Score=58.82 Aligned_cols=37 Identities=32% Similarity=0.343 Sum_probs=27.5
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccC
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPM 165 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~ 165 (672)
.|+|+|.|+||||||.+.|...........+.|||..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~ 38 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNR 38 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCc
Confidence 5899999999999999999876422223445677653
No 345
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.47 E-value=0.031 Score=56.00 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=24.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999999998764
No 346
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.47 E-value=0.035 Score=53.86 Aligned_cols=28 Identities=36% Similarity=0.485 Sum_probs=24.6
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+|++|||||||++.|....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999999998764
No 347
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.47 E-value=0.036 Score=53.60 Aligned_cols=28 Identities=32% Similarity=0.350 Sum_probs=24.5
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.|....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999997765
No 348
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.47 E-value=0.13 Score=50.33 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=24.3
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
++.+++|+|-|||||||+.+.|....+
T Consensus 31 PGeVLgiVGESGSGKtTLL~~is~rl~ 57 (258)
T COG4107 31 PGEVLGIVGESGSGKTTLLKCISGRLT 57 (258)
T ss_pred CCcEEEEEecCCCcHHhHHHHHhcccC
Confidence 467999999999999999999988764
No 349
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=94.46 E-value=0.029 Score=53.31 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.3
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+.|.|+|++|||||||++.|....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 468999999999999999997764
No 350
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.46 E-value=0.03 Score=57.48 Aligned_cols=27 Identities=37% Similarity=0.581 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998664
No 351
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.46 E-value=0.037 Score=53.92 Aligned_cols=28 Identities=39% Similarity=0.443 Sum_probs=24.6
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.|....
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3467899999999999999999998764
No 352
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.46 E-value=0.031 Score=55.50 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++.+++|+|++|||||||.+.|....
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998764
No 353
>PRK10908 cell division protein FtsE; Provisional
Probab=94.45 E-value=0.034 Score=56.33 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=24.8
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+.+++|+||+|||||||.+.|....+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999999987653
No 354
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.45 E-value=0.034 Score=55.80 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=24.9
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..++.+++|+|++|||||||.+.|....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568899999999999999999998775
No 355
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.45 E-value=0.034 Score=56.00 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=24.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||.+.|....
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999999998764
No 356
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.44 E-value=0.033 Score=55.96 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=26.6
Q ss_pred hhccccccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 119 KKKSFKSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 119 ~~r~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+........++|+|+|++||||||+.+.|....
T Consensus 14 ~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 14 RERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 333444567899999999999999999998763
No 357
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.44 E-value=0.036 Score=55.63 Aligned_cols=29 Identities=41% Similarity=0.503 Sum_probs=25.3
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
....+.+++|+||+|||||||.+.|....
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568899999999999999999998765
No 358
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.43 E-value=0.03 Score=57.86 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=23.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.+++|+|++|||||||.+.|...
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999999999999754
No 359
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.43 E-value=0.031 Score=56.09 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHHh
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLK 149 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e 149 (672)
.+++++|+||+|+||||+.+.+.-
T Consensus 24 ~g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CCcEEEEECCCCCChHHHHHHHHH
Confidence 357999999999999999998864
No 360
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.42 E-value=0.029 Score=58.79 Aligned_cols=24 Identities=33% Similarity=0.600 Sum_probs=21.2
Q ss_pred cccceEEEEeCCCCCChHHHHHHH
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNEL 147 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L 147 (672)
.+.+.+++|+|+||||||||++..
T Consensus 18 ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 18 IPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred ccCCcEEEEECCCCCchHHHHHHH
Confidence 356789999999999999999865
No 361
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=94.42 E-value=0.032 Score=56.85 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=21.9
Q ss_pred EEEEeCCCCCChHHHHHHHHhcC
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+|+|+|.+||||||+++.+.+++
T Consensus 2 iI~i~G~~gsGKstva~~~~~~g 24 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIENY 24 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHhcC
Confidence 79999999999999999998886
No 362
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.41 E-value=0.037 Score=55.02 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 363
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.41 E-value=0.037 Score=55.40 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=24.7
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+.+++|+|++|||||||.+.|....+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999999987753
No 364
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=94.41 E-value=0.032 Score=53.45 Aligned_cols=25 Identities=48% Similarity=0.709 Sum_probs=22.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
++=|.|+|+||+||||++..|.+.+
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~g 38 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKRG 38 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 5679999999999999999999986
No 365
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=94.41 E-value=0.22 Score=54.33 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=22.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...++++.|++|||||++...|.+.+
T Consensus 140 ~~~~ivl~G~TGsGKT~iL~~L~~~~ 165 (345)
T PRK11784 140 QFPLVVLGGNTGSGKTELLQALANAG 165 (345)
T ss_pred cCceEecCCCCcccHHHHHHHHHhcC
Confidence 34578899999999999999998764
No 366
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.40 E-value=0.71 Score=53.90 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+..++++||+|+||||+++.|.+..
T Consensus 38 ~hayLf~Gp~G~GKtt~A~~lak~l 62 (576)
T PRK14965 38 AHAFLFTGARGVGKTSTARILAKAL 62 (576)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 5678999999999999999998874
No 367
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.37 E-value=0.18 Score=54.89 Aligned_cols=117 Identities=17% Similarity=0.161 Sum_probs=60.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCC-c-eeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhcccc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHK-I-KLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFY 203 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~-~-~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~Y 203 (672)
.+.+|+|+||+||||||+++.|....+. . ...+ |-..|. | |.+-.. ..++...+. +...
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~--tiEdp~--E-----~~~~~~---------~~~i~q~ev-g~~~ 181 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHII--TIEDPI--E-----YVHRNK---------RSLINQREV-GLDT 181 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEE--EEcCCh--h-----hhccCc---------cceEEcccc-CCCC
Confidence 3568999999999999999998875431 1 1111 111111 1 100000 000000000 1111
Q ss_pred CcchHHHHHHHhcCCeEEEEeeHH---HHHH-HHH-hCCCcEEEEEeCCCHHHHHHHHHHcCC
Q psy11425 204 GTSFFPIVREIKSNVDILLEIDFQ---GAKQ-IKK-KFPNAIGIFILPPSLDSLKERLYKRGQ 261 (672)
Q Consensus 204 Gt~~~~I~~~l~~G~~vIldi~~~---g~~~-l~~-~~~~~~vIfI~~ps~e~l~~RL~~Rg~ 261 (672)
.+....++..+..++++|+..++. .+.. ++. ..+..++.-+.+.|......|+..-..
T Consensus 182 ~~~~~~l~~~lr~~pd~i~vgEird~~~~~~~l~aa~tGh~v~~T~Ha~~~~~~~~Rl~~~~~ 244 (343)
T TIGR01420 182 LSFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFGTLHTNSAAQTIERIIDVFP 244 (343)
T ss_pred cCHHHHHHHhhccCCCEEEEeCCCCHHHHHHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHhcc
Confidence 122345666777888888887553 2222 111 123445566677788888899986543
No 368
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.37 E-value=0.52 Score=55.48 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+..++++||+|+||||+++.|.+..
T Consensus 38 ~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 38 HHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568999999999999999998875
No 369
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=94.37 E-value=0.043 Score=63.85 Aligned_cols=29 Identities=31% Similarity=0.363 Sum_probs=25.4
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..++..++|+|+||||||||++.|...++
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 34678999999999999999999988763
No 370
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=94.36 E-value=0.032 Score=56.92 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998764
No 371
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=94.35 E-value=0.036 Score=56.61 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||.+.|....
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 372
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.33 E-value=0.034 Score=57.37 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=24.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998664
No 373
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.32 E-value=0.037 Score=56.29 Aligned_cols=27 Identities=33% Similarity=0.537 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||.+.|....
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999999998764
No 374
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.31 E-value=0.034 Score=57.22 Aligned_cols=27 Identities=44% Similarity=0.597 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||++.|....
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998764
No 375
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.31 E-value=0.037 Score=56.22 Aligned_cols=28 Identities=39% Similarity=0.564 Sum_probs=24.6
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.|....
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3467899999999999999999998765
No 376
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=94.30 E-value=0.034 Score=57.33 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=24.7
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+|++|||||||++.|....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 24 IPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3568899999999999999999998664
No 377
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.29 E-value=0.04 Score=53.92 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=24.5
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+|++|||||||.+.|....
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3467899999999999999999997764
No 378
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.29 E-value=0.039 Score=56.62 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=24.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 379
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.28 E-value=0.028 Score=53.19 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=20.7
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
++|.|+|+++|||||+++.|....
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999987664
No 380
>PF03180 Lipoprotein_9: NLPA lipoprotein; InterPro: IPR004872 This family of bacterial lipoproteins contains several antigenic members, that may be involved in bacterial virulence. Their precise function is unknown. However they are probably distantly related to IPR001638 from INTERPRO which are solute binding proteins.; PDB: 4EF2_A 4EF1_B 3GXA_C 3IR1_D 3TQW_A 3K2D_B 3UP9_A 1XS5_A 1P99_A.
Probab=94.28 E-value=0.43 Score=49.32 Aligned_cols=188 Identities=16% Similarity=0.161 Sum_probs=112.1
Q ss_pred HHHHHHHhhCCCceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEEeeCC----CCCCCCCCCeEEEE
Q psy11425 382 YVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLK----DIPMNLPSGFILCA 457 (672)
Q Consensus 382 ~v~~~l~~~~p~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aVHSlK----D~p~~~~~gl~i~a 457 (672)
.|.+.+++. |+++|++.+. |-. +...||.+|+||+-+.--. .--.+ .|..|.+
T Consensus 16 ~v~~~~~~~--Gi~vevv~f~---D~~----------------~~N~AL~~G~iDaN~fQh~~yl~~~n~~--~~~~L~~ 72 (237)
T PF03180_consen 16 AVKEKLKKK--GIDVEVVEFS---DYV----------------QPNEALADGEIDANFFQHIPYLEQFNKE--NGYNLVP 72 (237)
T ss_dssp HHHHHHHHT--TEEEEEEEES---STT----------------HHHHHHHTTSSSEEEEEEHHHHHHHHHH--HT--EEE
T ss_pred HHHHHHHhc--CCeEEEEEec---chh----------------hcChHHHCCCcceeccCCHHHHHHHHHH--CCCcEEE
Confidence 788888886 7999999887 332 2489999999999875321 11111 2444454
Q ss_pred ecCCCCCCceEEecCCCCCcCCCCCCeeecC----cHHHHHHHHHhC------C----------------CCeEEcccCC
Q psy11425 458 ILKREDPRDAFISNDYISLSTLPKNAVVGTN----SLRRKVLIKSFF------P----------------SLIIKSLRGN 511 (672)
Q Consensus 458 ~~~R~d~~D~lv~~~~~~~~~lp~~~~iGTs----S~RR~~ql~~~~------p----------------~~~~~~iRGN 511 (672)
+-+=--..=.|-|++++++++||.|++|+=+ ..=|.-.|+.-. | +|+|+++-..
T Consensus 73 v~~~~~~p~glYS~k~~sl~~lp~Ga~VaIpnD~sN~~RaL~lLq~aGLI~Lk~~~~~~~t~~DI~~Npk~l~~~evd~~ 152 (237)
T PF03180_consen 73 VGPTYIEPMGLYSKKYKSLDDLPDGATVAIPNDPSNQARALKLLQEAGLITLKDGVGLTATVDDITENPKNLKFKEVDAA 152 (237)
T ss_dssp EEEEEE---EEEESSSSSGGGS-TTEEEEEESSHHHHHHHHHHHHHTTSEEE-TT-GCC-SGGGEEEETTSEEEEEE-GG
T ss_pred ecceeEEeEEEeecccCchhhcCCCCEEEEeCCccchhHHHHHHHhCCeEEEcCCCCCccChhhhhhcccCceEEEecHh
Confidence 4332222234557889999999999999854 345666665532 2 3444444321
Q ss_pred HHHHHhhhcCCCCCEeehhHhhHhhcCCCCceeeecCCCCCCCCCCCceEEEEEec---CcHHHHHHhhccCChhhHHhH
Q psy11425 512 IDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILD---NRKELMEMLIPLNHYFSEQTV 588 (672)
Q Consensus 512 v~tRl~kl~~g~~daiilA~Agl~Rl~~~~~~~~~l~~~~~~pa~gQGalave~r~---~d~~~~~~l~~i~~~~t~~~~ 588 (672)
+=-+-|. ++|+.|+.-.=....|+...-.-++..+ +..-.=+..+.+|+ ||+.+..+.+.++++++
T Consensus 153 --~l~~~l~--dvD~avi~~~~a~~agl~~~~~~~~~e~---~~~~~y~n~lv~r~~~~d~~~ik~l~ea~~s~~v---- 221 (237)
T PF03180_consen 153 --QLPRALD--DVDAAVINGNYALDAGLDPKKDLLFEEP---DADKPYANVLVVREDDKDDPWIKKLVEAYQSPEV---- 221 (237)
T ss_dssp --GHHHHTT--TSSEEEE-HHHHHHTT--CCCHSSEE-S---SSSCGGEEEEEEEGGGTTCHHHHHHHHHHTSHHH----
T ss_pred --hHHhhcc--cCCEEEecHhHHHHcCcCcccceeeeec---ccCcceeEEEEEECCccCCHHHHHHHHHHCCHHH----
Confidence 1122233 4999998665556666654321122221 22456677788886 78899999999999988
Q ss_pred HHHHHHHHHhcCCCCccc
Q psy11425 589 KAERAVSRNFNGSCKISL 606 (672)
Q Consensus 589 ~aER~~l~~l~ggC~~pi 606 (672)
+.|+..--+|.-.|.
T Consensus 222 ---~~~i~~~~~g~~iPa 236 (237)
T PF03180_consen 222 ---KKFIEETYKGSVIPA 236 (237)
T ss_dssp ---HHHHHHHCTTSSEET
T ss_pred ---HHHHHHHcCCceEeC
Confidence 455555556666663
No 381
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.28 E-value=0.039 Score=54.25 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||.+.|....
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 382
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.26 E-value=0.028 Score=52.34 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.4
Q ss_pred EEEeCCCCCChHHHHHHHHhcC
Q psy11425 130 FIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 130 IvLtGpsGSGKSTLa~~L~e~~ 151 (672)
|+|+||||+|||++++.|.+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998875
No 383
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.26 E-value=0.035 Score=56.90 Aligned_cols=27 Identities=41% Similarity=0.656 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++.+++|+|++|||||||.+.|....
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 384
>PF13173 AAA_14: AAA domain
Probab=94.26 E-value=0.037 Score=51.13 Aligned_cols=25 Identities=40% Similarity=0.698 Sum_probs=22.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+++++|+||.||||||+++.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998764
No 385
>PRK06851 hypothetical protein; Provisional
Probab=94.26 E-value=0.028 Score=61.52 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=24.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...++++|+|+||+||||+++.+.+..
T Consensus 28 ~~~~~~il~G~pGtGKStl~~~i~~~~ 54 (367)
T PRK06851 28 GANRIFILKGGPGTGKSTLMKKIGEEF 54 (367)
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999987765
No 386
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.26 E-value=0.034 Score=60.46 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=23.8
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+-++.|.|||||||||+.+.++-..
T Consensus 29 ~~Gef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 29 KKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 457799999999999999999997664
No 387
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.24 E-value=0.037 Score=57.34 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+.+++|+||+|||||||.+.|....
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999998764
No 388
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=94.24 E-value=0.035 Score=57.77 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=23.9
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467899999999999999999997653
No 389
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=94.23 E-value=0.04 Score=56.99 Aligned_cols=28 Identities=36% Similarity=0.374 Sum_probs=24.8
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+|++|||||||.+.|....
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 26 LYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999998775
No 390
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.23 E-value=0.036 Score=57.35 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=24.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999999997664
No 391
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.23 E-value=0.042 Score=53.39 Aligned_cols=28 Identities=43% Similarity=0.525 Sum_probs=24.7
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.|....
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3467899999999999999999998765
No 392
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.23 E-value=0.035 Score=57.61 Aligned_cols=27 Identities=37% Similarity=0.582 Sum_probs=23.3
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
.+.+++|+||+||||||+++.+.....
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 355899999999999999999987753
No 393
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.23 E-value=0.039 Score=52.86 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
...|+|+|++|||||||.+.|...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 457999999999999999999765
No 394
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=94.21 E-value=0.036 Score=57.32 Aligned_cols=27 Identities=33% Similarity=0.577 Sum_probs=24.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998764
No 395
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=94.21 E-value=1.3 Score=43.19 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=22.7
Q ss_pred EEEeCCCCCChHHHHHHHHhcCCCceee
Q psy11425 130 FIISAPSGAGKSTLVNELLKKDHKIKLS 157 (672)
Q Consensus 130 IvLtGpsGSGKSTLa~~L~e~~~~~~~~ 157 (672)
|+=++.+|+||||++..|...++.++..
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHv 29 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHV 29 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCcc
Confidence 5667899999999999999988645443
No 396
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.21 E-value=0.037 Score=57.15 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=23.9
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||.+.|....
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999999997664
No 397
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=94.21 E-value=0.044 Score=63.91 Aligned_cols=29 Identities=41% Similarity=0.523 Sum_probs=25.4
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..++.+++|+|+||||||||++.|...++
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 386 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRVFD 386 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 34678999999999999999999987763
No 398
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.20 E-value=0.042 Score=55.34 Aligned_cols=31 Identities=42% Similarity=0.404 Sum_probs=26.2
Q ss_pred cccccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 122 SFKSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 122 ~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
....++.+++|+||+|||||||.+.|....+
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3345788999999999999999999987753
No 399
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.20 E-value=0.036 Score=56.65 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=24.8
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+|++|||||||.+.|....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3568899999999999999999998765
No 400
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.19 E-value=0.035 Score=55.59 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=24.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++.+++|+|++|||||||.+.|....
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 467899999999999999999997764
No 401
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.19 E-value=0.041 Score=55.75 Aligned_cols=27 Identities=44% Similarity=0.636 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||.+.|....
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 402
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.19 E-value=0.04 Score=57.03 Aligned_cols=27 Identities=33% Similarity=0.361 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||.+.|....
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999999998765
No 403
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.19 E-value=0.056 Score=60.33 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.3
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.-|.|+||||+|||++++.|....
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Confidence 358999999999999999998764
No 404
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.18 E-value=0.04 Score=57.47 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998765
No 405
>PRK12289 GTPase RsgA; Reviewed
Probab=94.18 E-value=0.036 Score=60.53 Aligned_cols=24 Identities=42% Similarity=0.816 Sum_probs=21.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.++++|+|+||+|||||.|.|...
T Consensus 172 ~ki~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 172 NKITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred cceEEEEeCCCCCHHHHHHHHcCc
Confidence 457999999999999999999754
No 406
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.17 E-value=0.037 Score=56.32 Aligned_cols=28 Identities=32% Similarity=0.266 Sum_probs=24.7
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.|....
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999998764
No 407
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.16 E-value=0.037 Score=57.15 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=24.2
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
....+-+++|.|||||||||+.+++-...
T Consensus 23 ~I~~gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHHHHHhccc
Confidence 34567899999999999999999886653
No 408
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=94.16 E-value=0.042 Score=56.08 Aligned_cols=28 Identities=43% Similarity=0.423 Sum_probs=24.7
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||++.|....
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999998765
No 409
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.15 E-value=0.033 Score=55.85 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=21.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
|++|+++||+||||||.+-+|...+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 5799999999999999998887654
No 410
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=94.15 E-value=0.05 Score=62.52 Aligned_cols=30 Identities=43% Similarity=0.452 Sum_probs=25.8
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
...++..++|+|+||||||||.+.|...++
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 373 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTLLNLLLGFVD 373 (529)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 335788999999999999999999987763
No 411
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.14 E-value=0.043 Score=57.19 Aligned_cols=28 Identities=32% Similarity=0.405 Sum_probs=25.0
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.|....
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4568899999999999999999998775
No 412
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=94.14 E-value=0.038 Score=57.39 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=24.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999999998654
No 413
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=94.11 E-value=0.071 Score=58.47 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=26.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCC---C-ceeecccccccCCCC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDH---K-IKLSISTTTRPMRPG 168 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~---~-~~~~v~~TTR~~r~~ 168 (672)
+.=|+|+|.|||||||++|.|+..++ + -...+..||..+.++
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y 80 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPY 80 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeC
Confidence 45699999999999999999976432 1 122233566555443
No 414
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.11 E-value=0.25 Score=56.34 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
+.-+.++||+|+||||+++.|.+.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~ 58 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLC 58 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 456999999999999999999874
No 415
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=94.09 E-value=0.43 Score=51.72 Aligned_cols=133 Identities=13% Similarity=0.033 Sum_probs=86.7
Q ss_pred HHHHHHHH-HHHHHHhhCCCceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEEeeCCCCCCC---CC
Q psy11425 375 LAIWQAEY-VRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLKDIPMN---LP 450 (672)
Q Consensus 375 LAl~Q~~~-v~~~l~~~~p~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aVHSlKD~p~~---~~ 450 (672)
+.+++.+- +.+.|++. ++++|++.+.+.+| .-+||.+|++|++.- =|+|.- ..
T Consensus 17 ~~lA~~~G~fe~~l~~~--Gl~Ve~~~f~~~~~-------------------~l~Al~aG~iD~~~~--g~~~~~~~~~a 73 (328)
T TIGR03427 17 WGYAAQQGIVDKWADKY--GITIEVVQINDYVE-------------------SINQYTAGKFDGCTM--TNMDALTIPAA 73 (328)
T ss_pred HHHHHHcCchhhhHHHc--CCeEEEEECCChHH-------------------HHHHHHcCCCCEEee--cCHHHHHHHHh
Confidence 44444433 44566664 78899888865222 234799999999753 444431 13
Q ss_pred CC--eEEEEecCCCCCCceEEecCCCCCcCCCCCCeeec--CcHHHHH--H-HHHh--C-CCCeEEcccCCHHHHHhhhc
Q psy11425 451 SG--FILCAILKREDPRDAFISNDYISLSTLPKNAVVGT--NSLRRKV--L-IKSF--F-PSLIIKSLRGNIDTRLNKLD 520 (672)
Q Consensus 451 ~g--l~i~a~~~R~d~~D~lv~~~~~~~~~lp~~~~iGT--sS~RR~~--q-l~~~--~-p~~~~~~iRGNv~tRl~kl~ 520 (672)
.| +.+.++.......|++|.++.+++.|| +|-+||+ +|..--. + |... - .|++++++. ...-..-|.
T Consensus 74 ~g~~~~iv~v~~~~~g~~~ivv~~i~svaDL-KGKkIav~~gs~~~~ll~~aL~~aGL~~~DV~~v~~~--~~d~~aAl~ 150 (328)
T TIGR03427 74 GGVDTTALIVGDFSNGNDGIVLKGGKSLADL-KGQKVNLVELSVSHYLLARALESVGLSEKDVKVVNTS--DADIVAAFI 150 (328)
T ss_pred CCCCeEEEEEEccCCCceEEEECCCCCHHHc-CCCEEeccCCChHHHHHHHHHHHcCCCHHHeEEEeCC--hHHHHHHHh
Confidence 34 457777777778899999888889999 6888876 2333211 1 2221 1 368888874 466788999
Q ss_pred CCCCCEeehhHhh
Q psy11425 521 KGEYAAIILAAAG 533 (672)
Q Consensus 521 ~g~~daiilA~Ag 533 (672)
+|+.||.++-.--
T Consensus 151 ~G~VDAa~~~eP~ 163 (328)
T TIGR03427 151 TKDVTAVVTWNPQ 163 (328)
T ss_pred cCCCcEEEEcCch
Confidence 9999999884433
No 416
>PRK09183 transposase/IS protein; Provisional
Probab=94.09 E-value=0.25 Score=51.73 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=21.5
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+..++|+||+|+|||+|+..|...
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 34567889999999999999998543
No 417
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.09 E-value=0.04 Score=56.79 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.7
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||.+.|....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467899999999999999999997653
No 418
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.07 E-value=0.045 Score=55.78 Aligned_cols=27 Identities=41% Similarity=0.545 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||++.|....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467899999999999999999997765
No 419
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=94.06 E-value=0.04 Score=57.84 Aligned_cols=28 Identities=32% Similarity=0.357 Sum_probs=24.5
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.|....
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 30 VPGGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999997664
No 420
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.06 E-value=0.041 Score=57.20 Aligned_cols=28 Identities=32% Similarity=0.351 Sum_probs=24.1
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+|++|||||||++.|....
T Consensus 35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3467899999999999999999997653
No 421
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.05 E-value=0.044 Score=58.06 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||.+.|....
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998775
No 422
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.05 E-value=0.042 Score=55.48 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=24.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||++.|....
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999999998664
No 423
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.05 E-value=0.046 Score=55.95 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=24.5
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||.+.|....
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 467899999999999999999998775
No 424
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=94.05 E-value=0.045 Score=65.28 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=25.9
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
...++..|+|+|+||||||||++.|...++
T Consensus 501 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~ 530 (710)
T TIGR03796 501 TLQPGQRVALVGGSGSGKSTIAKLVAGLYQ 530 (710)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 335688999999999999999999988763
No 425
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.03 E-value=0.81 Score=49.43 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.++.|+|+|++||||||+++.|...
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999875
No 426
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=94.03 E-value=0.043 Score=55.06 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
|..|+|+||+||||||+.+.+....
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3579999999999999999998764
No 427
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.03 E-value=0.045 Score=57.30 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998765
No 428
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=94.03 E-value=0.041 Score=56.78 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=23.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.+++|+||+|||||||.+.|...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999999754
No 429
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.01 E-value=0.22 Score=51.21 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.2
Q ss_pred eEEEEeCCCCCChHHHHHHHHhc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..++|+||+|+|||+|+..+...
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~ 68 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAE 68 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999987654
No 430
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.01 E-value=0.042 Score=56.71 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=23.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.+++|+|++|||||||.+.|...
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999999854
No 431
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.01 E-value=0.048 Score=57.18 Aligned_cols=28 Identities=39% Similarity=0.510 Sum_probs=24.8
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+.+++|+||+|||||||.+.|....+
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999999987753
No 432
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.99 E-value=0.043 Score=57.41 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.+++|+|++|||||||++.|...
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 46789999999999999999999764
No 433
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.98 E-value=0.048 Score=54.45 Aligned_cols=28 Identities=36% Similarity=0.561 Sum_probs=24.6
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.+....
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 3467899999999999999999997764
No 434
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.98 E-value=0.042 Score=58.13 Aligned_cols=27 Identities=37% Similarity=0.567 Sum_probs=23.8
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|.|||||||||+.+.++-..
T Consensus 26 ~~Ge~vaLlGpSGaGKsTlLRiIAGLe 52 (345)
T COG1118 26 KSGELVALLGPSGAGKSTLLRIIAGLE 52 (345)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhCcC
Confidence 368899999999999999999997653
No 435
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.98 E-value=0.046 Score=57.31 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=24.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999999998765
No 436
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.98 E-value=0.043 Score=56.71 Aligned_cols=26 Identities=35% Similarity=0.485 Sum_probs=23.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.+++|+|++|||||||++.|...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45789999999999999999999764
No 437
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.97 E-value=0.054 Score=56.53 Aligned_cols=27 Identities=26% Similarity=0.155 Sum_probs=22.6
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+...-++|+||||+||||+++.+.+..
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 344568999999999999999997763
No 438
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=93.97 E-value=0.051 Score=63.40 Aligned_cols=31 Identities=23% Similarity=0.190 Sum_probs=26.2
Q ss_pred cccccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 122 SFKSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 122 ~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
....++..|+|+|+||||||||.+.|...++
T Consensus 362 l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~ 392 (592)
T PRK10790 362 LSVPSRGFVALVGHTGSGKSTLASLLMGYYP 392 (592)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3335688999999999999999999988763
No 439
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=93.97 E-value=0.044 Score=56.59 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.7
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
...+.+++|+|++|||||||.+.|...
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 26 IEENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 346789999999999999999999764
No 440
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.97 E-value=0.044 Score=55.30 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.6
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.|....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 24 IPTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3467899999999999999999998764
No 441
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=93.96 E-value=0.048 Score=56.63 Aligned_cols=27 Identities=37% Similarity=0.481 Sum_probs=24.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++.+++|+|++|||||||++.|....
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 442
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=93.96 E-value=0.052 Score=64.89 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=26.5
Q ss_pred cccccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 122 SFKSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 122 ~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
....++..++|+|||||||||+++.|...++
T Consensus 502 l~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~ 532 (711)
T TIGR00958 502 FTLHPGEVVALVGPSGSGKSTVAALLQNLYQ 532 (711)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 3345788999999999999999999988763
No 443
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=93.96 E-value=0.044 Score=57.22 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=24.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||++.|....
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999999998764
No 444
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.95 E-value=0.044 Score=56.22 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=24.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||.+.|....
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999999998764
No 445
>PRK12288 GTPase RsgA; Reviewed
Probab=93.95 E-value=0.022 Score=62.11 Aligned_cols=25 Identities=48% Similarity=0.720 Sum_probs=21.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++++|+|+||+|||||.|.|....
T Consensus 205 ~ki~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 205 GRISIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred hCCEEEECCCCCCHHHHHHHhcccc
Confidence 3578999999999999999997653
No 446
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.94 E-value=0.05 Score=54.35 Aligned_cols=28 Identities=29% Similarity=0.502 Sum_probs=24.8
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+|++|||||||.+.|....
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468899999999999999999998765
No 447
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.94 E-value=0.044 Score=56.72 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=24.5
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+|++|||||||.+.|....
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 30 ILKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3467899999999999999999997654
No 448
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=93.94 E-value=0.045 Score=57.29 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=24.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||.+.|....
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999998654
No 449
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.93 E-value=0.044 Score=56.70 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=23.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.+++|+||+|||||||.+.|...
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 30 PKNRVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999999999754
No 450
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.92 E-value=0.048 Score=57.16 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=24.7
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+.+++|+||+|||||||.+.|....+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGLLK 60 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999999987753
No 451
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.91 E-value=0.046 Score=56.81 Aligned_cols=28 Identities=43% Similarity=0.545 Sum_probs=24.6
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.|....
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999998764
No 452
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.90 E-value=0.049 Score=55.57 Aligned_cols=28 Identities=36% Similarity=0.487 Sum_probs=24.8
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.|....
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 24 IPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3467899999999999999999998765
No 453
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.89 E-value=0.053 Score=54.27 Aligned_cols=27 Identities=37% Similarity=0.406 Sum_probs=24.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||.+.|....
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467899999999999999999997764
No 454
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.89 E-value=0.045 Score=57.37 Aligned_cols=28 Identities=32% Similarity=0.526 Sum_probs=24.4
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.|....
T Consensus 36 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 36 IPRGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3568899999999999999999997653
No 455
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=93.89 E-value=0.05 Score=56.49 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=24.9
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+.+++|+|++|||||||++.|....+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4688999999999999999999987753
No 456
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.89 E-value=0.052 Score=54.61 Aligned_cols=26 Identities=35% Similarity=0.337 Sum_probs=23.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.. .+++|+||+|||||||.+.|....
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 45 899999999999999999998765
No 457
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.88 E-value=0.051 Score=54.86 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=24.7
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+.+++|+|++|||||||.+.|....+
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999999987653
No 458
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.87 E-value=0.047 Score=56.39 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||++.|....
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 467899999999999999999998654
No 459
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.86 E-value=0.045 Score=57.62 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 460
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.85 E-value=0.059 Score=62.72 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=25.4
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..++..++|+||||||||||.+.|...++
T Consensus 363 i~~G~~~aivG~sGsGKSTL~~ll~g~~~ 391 (574)
T PRK11160 363 IKAGEKVALLGRTGCGKSTLLQLLTRAWD 391 (574)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35688999999999999999999988763
No 461
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.85 E-value=0.047 Score=56.45 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=24.5
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+|++|||||||++.|....
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 27 FPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3467899999999999999999998764
No 462
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.84 E-value=0.044 Score=56.58 Aligned_cols=26 Identities=38% Similarity=0.578 Sum_probs=23.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.++.+++|+|++|||||||.+.|...
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 46789999999999999999999764
No 463
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.84 E-value=0.048 Score=55.97 Aligned_cols=27 Identities=33% Similarity=0.608 Sum_probs=24.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++.+++|+|++|||||||.+.|....
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998764
No 464
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=93.84 E-value=0.052 Score=50.54 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.0
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..|+++|++||||||+.+.|....
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~ 25 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRD 25 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCc
Confidence 368999999999999999997653
No 465
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.12 Score=55.09 Aligned_cols=94 Identities=22% Similarity=0.340 Sum_probs=56.6
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHH-HHHHHHcCCchhHHhHhccccCcch
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDN-FKKLQKSGKFLEWAEVHGNFYGTSF 207 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~-F~~~i~~g~fle~~~~~g~~YGt~~ 207 (672)
=|.|.||+|||||-|++-|++.. .+.|++.+.|--..+| |.-.+-+. ..+++++-.|-...--.|..| .
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~L-nVPFaiADATtLTEAG------YVGEDVENillkLlqaadydV~rAerGIIy---I 168 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKIL-NVPFAIADATTLTEAG------YVGEDVENILLKLLQAADYDVERAERGIIY---I 168 (408)
T ss_pred cEEEECCCCCcHHHHHHHHHHHh-CCCeeeccccchhhcc------ccchhHHHHHHHHHHHcccCHHHHhCCeEE---E
Confidence 48899999999999999999886 3444554444333333 22222333 445555555533333456666 5
Q ss_pred HHHHHHHhc--CCeEEEEeeHHHHHHH
Q psy11425 208 FPIVREIKS--NVDILLEIDFQGAKQI 232 (672)
Q Consensus 208 ~~I~~~l~~--G~~vIldi~~~g~~~l 232 (672)
+.|.++.++ ++.+--|++-+|+++.
T Consensus 169 DEIDKIarkSeN~SITRDVSGEGVQQA 195 (408)
T COG1219 169 DEIDKIARKSENPSITRDVSGEGVQQA 195 (408)
T ss_pred echhhhhccCCCCCcccccCchHHHHH
Confidence 566666664 3444556777777654
No 466
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.81 E-value=0.048 Score=56.34 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.7
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHh
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLK 149 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e 149 (672)
..+.+++|+|++|||||||.+.|..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 27 EEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4678999999999999999999964
No 467
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.81 E-value=0.047 Score=56.84 Aligned_cols=27 Identities=41% Similarity=0.549 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||.+.|....
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998764
No 468
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.81 E-value=0.047 Score=57.47 Aligned_cols=27 Identities=33% Similarity=0.407 Sum_probs=24.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999997654
No 469
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.81 E-value=0.048 Score=56.67 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.9
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||.+.|....
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 36 PKNSVTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998653
No 470
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=93.81 E-value=0.054 Score=56.77 Aligned_cols=27 Identities=37% Similarity=0.450 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 471
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=93.80 E-value=0.065 Score=62.00 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=25.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
.++..++|+||||||||||++.|...++
T Consensus 347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~ 374 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4688999999999999999999987763
No 472
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.80 E-value=0.054 Score=52.49 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=22.0
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
++|.|+|++||||||++..|....
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998875
No 473
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=93.80 E-value=0.052 Score=56.67 Aligned_cols=27 Identities=37% Similarity=0.396 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||.+.|....
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 474
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=93.79 E-value=0.049 Score=56.98 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=24.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||.+.|....
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 467899999999999999999997654
No 475
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=93.79 E-value=0.057 Score=52.05 Aligned_cols=25 Identities=36% Similarity=0.664 Sum_probs=21.8
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
++++|+|++||||||+.+.+.+..+
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~~ 25 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQH 25 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhccc
Confidence 4789999999999999999887643
No 476
>PRK00093 GTP-binding protein Der; Reviewed
Probab=93.79 E-value=0.24 Score=55.48 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=22.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
....|+|+|.+++|||||.+.|....
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~ 197 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEE 197 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCC
Confidence 35679999999999999999998654
No 477
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.78 E-value=0.049 Score=58.15 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+||||||+.+.|....
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 478
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.77 E-value=0.057 Score=54.77 Aligned_cols=27 Identities=37% Similarity=0.444 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 467899999999999999999998765
No 479
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.77 E-value=0.05 Score=56.21 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=24.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||++.|....
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 467899999999999999999998653
No 480
>KOG1970|consensus
Probab=93.77 E-value=0.2 Score=56.73 Aligned_cols=26 Identities=42% Similarity=0.562 Sum_probs=23.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+++.||||+|+||||..+.|.+..
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhh
Confidence 46799999999999999999998774
No 481
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=93.77 E-value=0.041 Score=61.85 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=20.0
Q ss_pred cccceEEEEeCCCCCChHHHHH
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVN 145 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~ 145 (672)
...+.+++|+|||||||||+.+
T Consensus 29 i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 29 LPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred ecCCCEEEEECCCCCCHHHHHh
Confidence 3567899999999999999999
No 482
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.76 E-value=0.048 Score=57.34 Aligned_cols=27 Identities=37% Similarity=0.375 Sum_probs=24.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||.+.|....
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (274)
T PRK13647 29 PEGSKTALLGPNGAGKSTLLLHLNGIY 55 (274)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 467899999999999999999998764
No 483
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.76 E-value=0.051 Score=54.26 Aligned_cols=26 Identities=31% Similarity=0.629 Sum_probs=23.5
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.+++|+|++|||||||.+.|...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999765
No 484
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.76 E-value=0.051 Score=56.19 Aligned_cols=27 Identities=41% Similarity=0.518 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||++.|....
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 28 PERQITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467899999999999999999998764
No 485
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.75 E-value=0.048 Score=55.82 Aligned_cols=27 Identities=33% Similarity=0.521 Sum_probs=24.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 29 NQGEIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999999997664
No 486
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=93.75 E-value=0.054 Score=64.61 Aligned_cols=30 Identities=30% Similarity=0.182 Sum_probs=25.8
Q ss_pred cccccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 122 SFKSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 122 ~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
....++..++|+|+||||||||++.|...+
T Consensus 495 l~i~~G~~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 495 LTIKMNSKTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 334568899999999999999999998776
No 487
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.73 E-value=0.058 Score=54.68 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=24.7
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+.+++|+|++|||||||.+.|....+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999999987653
No 488
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.71 E-value=1.6 Score=51.13 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=22.2
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+.-++|+||+|+||||+++.|.+..
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh
Confidence 4568999999999999999998874
No 489
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=93.70 E-value=0.05 Score=56.96 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=24.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++.+++|+|++|||||||++.|....
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 62 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVGLE 62 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999997664
No 490
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.70 E-value=0.053 Score=53.94 Aligned_cols=28 Identities=46% Similarity=0.635 Sum_probs=24.6
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.|....
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999998765
No 491
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.70 E-value=0.043 Score=52.89 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChHHHHHHHHhcC
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+|+|+|++||||||++..|....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999988764
No 492
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=93.69 E-value=0.051 Score=57.99 Aligned_cols=28 Identities=39% Similarity=0.487 Sum_probs=24.6
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.|....
T Consensus 27 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 27 IARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3467899999999999999999998764
No 493
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=93.68 E-value=0.053 Score=56.91 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=24.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+|++|||||||++.|....
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999998653
No 494
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.68 E-value=0.046 Score=50.70 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=19.3
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy11425 130 FIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 130 IvLtGpsGSGKSTLa~~L~e~ 150 (672)
|+|+|++|||||||.+.|...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999765
No 495
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.66 E-value=0.054 Score=55.86 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=23.9
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||++.|....
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 27 PARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999997654
No 496
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=93.63 E-value=0.051 Score=58.76 Aligned_cols=29 Identities=24% Similarity=0.193 Sum_probs=25.1
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
....+.+++|+|+||||||||++.|....
T Consensus 29 ~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34568899999999999999999998764
No 497
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=93.63 E-value=0.061 Score=55.19 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=24.7
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+|++|||||||.+.|....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999999998764
No 498
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=93.61 E-value=0.052 Score=54.35 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHHh
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLK 149 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e 149 (672)
.+ +++|+||+|||||||.+.|.-
T Consensus 22 ~g-~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 22 PG-LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred CC-cEEEECCCCCCHHHHHHHHHH
Confidence 35 999999999999999999853
No 499
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=93.61 E-value=0.059 Score=58.66 Aligned_cols=27 Identities=41% Similarity=0.527 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 29 ~~Gei~~iiG~nGsGKSTLlk~L~Gl~ 55 (343)
T PRK11153 29 PAGEIFGVIGASGAGKSTLIRCINLLE 55 (343)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 500
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.60 E-value=0.056 Score=55.85 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.+++|+|++|||||||.+.|...
T Consensus 29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 29 YKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999999999999765
Done!