Query psy11425
Match_columns 672
No_of_seqs 545 out of 3467
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 18:06:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gtk_A Porphobilinogen deamina 100.0 4E-104 1E-108 822.1 35.4 297 371-670 11-307 (313)
2 3ecr_A Porphobilinogen deamina 100.0 3E-102 9E-107 815.1 32.8 297 371-670 29-358 (364)
3 1ex7_A Guanylate kinase; subst 100.0 8.4E-40 2.9E-44 321.7 17.5 181 128-308 2-186 (186)
4 3tvt_A Disks large 1 tumor sup 100.0 2.1E-33 7.1E-38 294.3 13.3 198 116-318 89-288 (292)
5 1kjw_A Postsynaptic density pr 100.0 1.4E-32 4.8E-37 289.0 13.6 198 115-318 93-293 (295)
6 3ney_A 55 kDa erythrocyte memb 100.0 5.2E-32 1.8E-36 268.3 13.6 183 121-313 13-196 (197)
7 3tau_A Guanylate kinase, GMP k 100.0 6.3E-31 2.2E-35 262.3 13.7 189 125-313 6-195 (208)
8 3a00_A Guanylate kinase, GMP k 100.0 5.4E-30 1.8E-34 250.9 12.3 181 127-307 1-185 (186)
9 2qor_A Guanylate kinase; phosp 100.0 1.1E-28 3.8E-33 244.9 18.2 186 123-308 8-198 (204)
10 2xkx_A Disks large homolog 4; 100.0 7.3E-29 2.5E-33 290.3 17.7 197 116-318 520-719 (721)
11 1s96_A Guanylate kinase, GMP k 100.0 1.2E-27 4E-32 241.3 18.7 192 122-313 11-204 (219)
12 1kgd_A CASK, peripheral plasma 99.9 8.7E-28 3E-32 234.1 11.1 174 124-306 2-178 (180)
13 3tr0_A Guanylate kinase, GMP k 99.9 5.2E-25 1.8E-29 217.0 16.7 188 126-313 6-193 (205)
14 1lvg_A Guanylate kinase, GMP k 99.9 6.3E-25 2.1E-29 217.5 15.9 183 126-308 3-189 (198)
15 1tjl_A DNAK suppressor protein 99.9 5E-25 1.7E-29 207.9 14.0 123 1-123 26-149 (151)
16 3lnc_A Guanylate kinase, GMP k 99.9 4E-25 1.4E-29 223.3 13.6 198 124-321 24-224 (231)
17 3tsz_A Tight junction protein 99.9 7.3E-23 2.5E-27 223.0 13.7 168 115-315 220-389 (391)
18 3shw_A Tight junction protein 99.9 4.7E-23 1.6E-27 227.9 11.5 173 115-320 212-386 (468)
19 2j41_A Guanylate kinase; GMP, 99.9 1.7E-22 5.9E-27 199.0 13.9 189 125-313 4-193 (207)
20 1z6g_A Guanylate kinase; struc 99.8 5.7E-20 1.9E-24 184.6 18.4 189 125-313 21-214 (218)
21 2kq9_A DNAK suppressor protein 99.8 9.6E-23 3.3E-27 183.6 -2.3 106 9-115 6-111 (112)
22 3kfv_A Tight junction protein 99.8 8.7E-20 3E-24 191.4 11.7 168 115-320 133-303 (308)
23 4dey_A Voltage-dependent L-typ 99.7 8.9E-18 3E-22 177.0 6.1 169 126-306 141-320 (337)
24 1znw_A Guanylate kinase, GMP k 99.6 7.9E-15 2.7E-19 145.4 19.0 183 123-305 16-200 (207)
25 2kgo_A Uncharacterized protein 99.6 7.1E-17 2.4E-21 142.2 1.5 58 67-124 36-95 (108)
26 3lu0_E DNA-directed RNA polyme 99.6 2.5E-16 8.5E-21 135.0 4.0 59 311-370 1-60 (91)
27 2a6h_E RNA polymerase omega ch 99.6 7.7E-16 2.6E-20 134.5 4.6 80 311-393 1-95 (99)
28 1gvn_B Zeta; postsegregational 99.4 2.4E-13 8.3E-18 142.1 7.5 172 125-313 31-235 (287)
29 4i1u_A Dephospho-COA kinase; s 99.3 2E-12 6.7E-17 129.0 9.9 176 127-306 9-201 (210)
30 3lw7_A Adenylate kinase relate 99.3 9.6E-11 3.3E-15 110.7 15.6 160 128-306 2-176 (179)
31 3tlx_A Adenylate kinase 2; str 99.2 6.8E-11 2.3E-15 120.3 13.8 164 126-305 28-242 (243)
32 1qf9_A UMP/CMP kinase, protein 99.2 8.9E-11 3E-15 113.3 13.3 165 125-306 4-191 (194)
33 3dl0_A Adenylate kinase; phosp 99.2 1E-10 3.4E-15 116.0 13.2 162 129-306 2-214 (216)
34 2z0h_A DTMP kinase, thymidylat 99.2 4.1E-11 1.4E-15 116.4 10.2 166 129-306 2-191 (197)
35 2f6r_A COA synthase, bifunctio 99.2 4E-11 1.4E-15 124.7 10.3 177 125-306 73-268 (281)
36 3fb4_A Adenylate kinase; psych 99.2 6.7E-11 2.3E-15 117.1 10.8 162 129-306 2-214 (216)
37 2c95_A Adenylate kinase 1; tra 99.2 4.7E-11 1.6E-15 115.8 9.4 168 126-306 8-193 (196)
38 1ukz_A Uridylate kinase; trans 99.1 7.1E-10 2.4E-14 108.6 16.0 170 124-306 12-201 (203)
39 1jjv_A Dephospho-COA kinase; P 99.1 1.1E-10 3.6E-15 114.9 9.4 67 239-306 125-196 (206)
40 4eaq_A DTMP kinase, thymidylat 99.1 3.7E-10 1.2E-14 114.0 13.5 170 125-306 24-224 (229)
41 2cdn_A Adenylate kinase; phosp 99.1 2.5E-10 8.5E-15 111.9 11.5 166 123-305 16-200 (201)
42 3t61_A Gluconokinase; PSI-biol 99.1 1.5E-10 5.1E-15 113.6 9.5 159 125-310 16-183 (202)
43 1qhx_A CPT, protein (chloramph 99.1 2.7E-10 9.1E-15 109.0 10.9 162 126-304 2-176 (178)
44 2bwj_A Adenylate kinase 5; pho 99.1 2.1E-10 7.2E-15 111.5 10.2 168 126-306 11-196 (199)
45 3lv8_A DTMP kinase, thymidylat 99.1 3.6E-10 1.2E-14 114.7 11.7 179 125-313 25-235 (236)
46 1ly1_A Polynucleotide kinase; 99.1 3.7E-10 1.3E-14 107.7 9.9 156 126-305 1-171 (181)
47 1tev_A UMP-CMP kinase; ploop, 99.0 7.1E-10 2.4E-14 107.0 10.7 173 126-306 2-194 (196)
48 2pbr_A DTMP kinase, thymidylat 99.0 2E-09 6.8E-14 103.9 13.8 164 129-306 2-191 (195)
49 2v54_A DTMP kinase, thymidylat 99.0 5.5E-10 1.9E-14 109.1 9.6 165 126-307 3-191 (204)
50 2wwf_A Thymidilate kinase, put 99.0 5.2E-10 1.8E-14 110.0 8.9 170 126-307 9-200 (212)
51 3kb2_A SPBC2 prophage-derived 99.0 5E-09 1.7E-13 99.1 15.4 70 239-309 96-169 (173)
52 3trf_A Shikimate kinase, SK; a 99.0 1.4E-09 4.9E-14 104.7 11.3 155 126-306 4-174 (185)
53 1vht_A Dephospho-COA kinase; s 99.0 4.3E-10 1.5E-14 111.7 7.7 67 239-306 127-194 (218)
54 1knq_A Gluconate kinase; ALFA/ 99.0 6.7E-09 2.3E-13 99.2 15.7 159 125-306 6-173 (175)
55 3a8t_A Adenylate isopentenyltr 99.0 3.4E-10 1.2E-14 120.2 6.6 124 126-259 39-194 (339)
56 4eun_A Thermoresistant glucoki 99.0 1.7E-09 5.9E-14 106.1 11.1 161 126-307 28-194 (200)
57 3vaa_A Shikimate kinase, SK; s 99.0 3.1E-09 1.1E-13 104.2 12.9 156 125-306 23-195 (199)
58 1kht_A Adenylate kinase; phosp 99.0 2.9E-09 1E-13 102.5 12.0 158 127-304 3-191 (192)
59 3cm0_A Adenylate kinase; ATP-b 99.0 1.6E-09 5.5E-14 104.3 10.1 161 126-304 3-184 (186)
60 1nn5_A Similar to deoxythymidy 99.0 6.4E-10 2.2E-14 109.4 7.4 170 126-306 8-200 (215)
61 4edh_A DTMP kinase, thymidylat 99.0 5.3E-09 1.8E-13 104.5 13.9 171 125-306 4-206 (213)
62 2plr_A DTMP kinase, probable t 98.9 9E-09 3.1E-13 100.7 13.7 164 126-306 3-207 (213)
63 1nks_A Adenylate kinase; therm 98.9 1.5E-09 5E-14 104.6 7.5 163 128-304 2-193 (194)
64 1uf9_A TT1252 protein; P-loop, 98.9 1.8E-09 6.3E-14 105.1 7.7 67 239-306 126-193 (203)
65 3v9p_A DTMP kinase, thymidylat 98.9 1.7E-09 5.7E-14 109.2 7.4 170 126-306 24-226 (227)
66 3umf_A Adenylate kinase; rossm 98.9 4.3E-09 1.5E-13 105.4 10.4 171 125-307 27-214 (217)
67 1y63_A LMAJ004144AAA protein; 98.9 6.2E-09 2.1E-13 100.8 11.0 157 125-307 8-175 (184)
68 1zak_A Adenylate kinase; ATP:A 98.9 9E-10 3.1E-14 109.7 4.5 167 126-306 4-210 (222)
69 1rz3_A Hypothetical protein rb 98.9 3.5E-10 1.2E-14 111.4 1.1 160 123-291 18-200 (201)
70 2if2_A Dephospho-COA kinase; a 98.9 1.5E-09 5E-14 106.4 5.3 66 239-306 125-191 (204)
71 2vli_A Antibiotic resistance p 98.8 2.4E-08 8.1E-13 95.7 13.4 151 125-306 3-171 (183)
72 2grj_A Dephospho-COA kinase; T 98.8 1E-08 3.4E-13 100.8 10.8 164 125-307 10-187 (192)
73 3sr0_A Adenylate kinase; phosp 98.8 1.3E-08 4.6E-13 101.0 10.5 162 129-306 2-204 (206)
74 1uj2_A Uridine-cytidine kinase 98.8 3.3E-08 1.1E-12 100.6 13.3 87 217-306 131-233 (252)
75 4tmk_A Protein (thymidylate ki 98.8 4.8E-08 1.6E-12 97.5 14.1 170 126-306 2-206 (213)
76 1e6c_A Shikimate kinase; phosp 98.8 3.7E-08 1.3E-12 93.4 12.8 65 239-305 95-169 (173)
77 2xb4_A Adenylate kinase; ATP-b 98.8 2.4E-08 8.4E-13 99.8 12.0 160 129-304 2-222 (223)
78 3foz_A TRNA delta(2)-isopenten 98.8 1E-09 3.6E-14 115.1 1.6 95 125-229 8-111 (316)
79 2rhm_A Putative kinase; P-loop 98.8 2.4E-08 8.2E-13 96.4 10.7 116 125-260 3-126 (193)
80 3exa_A TRNA delta(2)-isopenten 98.8 1.8E-09 6.1E-14 113.4 2.8 99 126-234 2-110 (322)
81 2iyv_A Shikimate kinase, SK; t 98.8 9.3E-09 3.2E-13 99.0 7.3 66 240-306 96-168 (184)
82 2ze6_A Isopentenyl transferase 98.7 5.3E-09 1.8E-13 106.9 5.4 122 128-260 2-139 (253)
83 2pt5_A Shikimate kinase, SK; a 98.7 4.2E-08 1.4E-12 92.7 11.2 65 239-308 94-165 (168)
84 1ltq_A Polynucleotide kinase; 98.7 9.8E-09 3.4E-13 106.8 7.1 132 126-277 1-146 (301)
85 1zuh_A Shikimate kinase; alpha 98.7 3.6E-08 1.2E-12 93.5 9.9 63 239-304 98-167 (168)
86 3eph_A TRNA isopentenyltransfe 98.7 2.3E-09 7.9E-14 116.3 0.5 89 127-225 2-99 (409)
87 3ake_A Cytidylate kinase; CMP 98.7 1.4E-07 4.9E-12 92.0 13.2 66 239-305 137-207 (208)
88 2jaq_A Deoxyguanosine kinase; 98.7 2.8E-07 9.5E-12 89.4 14.4 67 239-306 126-200 (205)
89 3ld9_A DTMP kinase, thymidylat 98.7 4.1E-08 1.4E-12 98.7 8.5 170 125-306 19-215 (223)
90 2qt1_A Nicotinamide riboside k 98.6 9.9E-08 3.4E-12 93.7 11.0 169 125-305 19-204 (207)
91 2gks_A Bifunctional SAT/APS ki 98.6 2E-08 6.9E-13 113.7 6.1 160 125-306 370-540 (546)
92 1gtv_A TMK, thymidylate kinase 98.6 2.3E-10 7.8E-15 112.7 -9.0 171 128-301 1-208 (214)
93 3hdt_A Putative kinase; struct 98.6 4E-07 1.4E-11 91.4 13.8 95 209-306 108-218 (223)
94 3fdi_A Uncharacterized protein 98.6 2.3E-07 8E-12 91.5 11.9 169 127-306 6-198 (201)
95 1a7j_A Phosphoribulokinase; tr 98.6 4E-10 1.4E-14 117.8 -8.6 25 126-150 4-28 (290)
96 4hlc_A DTMP kinase, thymidylat 98.6 2.3E-07 7.8E-12 92.0 11.5 169 126-306 1-200 (205)
97 2h92_A Cytidylate kinase; ross 98.6 4.7E-07 1.6E-11 89.4 13.7 88 214-306 115-217 (219)
98 3be4_A Adenylate kinase; malar 98.6 4.1E-07 1.4E-11 90.3 13.0 161 127-303 5-216 (217)
99 1zd8_A GTP:AMP phosphotransfer 98.6 1.2E-07 4E-12 94.7 9.1 165 126-306 6-214 (227)
100 3zvl_A Bifunctional polynucleo 98.6 7.3E-08 2.5E-12 105.6 8.2 125 125-289 256-393 (416)
101 1aky_A Adenylate kinase; ATP:A 98.6 3.7E-07 1.3E-11 90.6 12.4 163 127-305 4-218 (220)
102 3iij_A Coilin-interacting nucl 98.6 3.4E-08 1.2E-12 94.8 4.8 26 126-151 10-35 (180)
103 1kag_A SKI, shikimate kinase I 98.5 1.2E-07 4.1E-12 89.9 8.0 63 240-305 99-171 (173)
104 3a4m_A L-seryl-tRNA(SEC) kinas 98.5 3.8E-06 1.3E-10 85.8 18.4 155 126-307 3-174 (260)
105 1q3t_A Cytidylate kinase; nucl 98.5 6.3E-07 2.2E-11 90.1 12.3 89 214-306 132-234 (236)
106 1e4v_A Adenylate kinase; trans 98.5 5.4E-07 1.9E-11 89.0 11.5 159 129-304 2-213 (214)
107 3nwj_A ATSK2; P loop, shikimat 98.5 6E-07 2.1E-11 91.7 11.8 25 127-151 48-72 (250)
108 4e22_A Cytidylate kinase; P-lo 98.4 7.2E-07 2.5E-11 90.9 10.8 67 239-306 164-244 (252)
109 1via_A Shikimate kinase; struc 98.4 3E-07 1E-11 87.8 6.3 66 239-307 94-167 (175)
110 3hjn_A DTMP kinase, thymidylat 98.4 1.7E-06 5.7E-11 85.1 11.5 166 129-306 2-191 (197)
111 2bdt_A BH3686; alpha-beta prot 98.4 1.4E-06 4.8E-11 84.1 10.7 26 126-151 1-26 (189)
112 3asz_A Uridine kinase; cytidin 98.4 6.9E-07 2.4E-11 87.7 8.7 27 125-151 4-30 (211)
113 2pez_A Bifunctional 3'-phospho 98.4 1E-06 3.5E-11 84.3 9.6 65 239-306 106-175 (179)
114 3crm_A TRNA delta(2)-isopenten 98.4 4.1E-08 1.4E-12 103.8 -0.3 92 125-226 3-103 (323)
115 3d3q_A TRNA delta(2)-isopenten 98.3 4.6E-07 1.6E-11 96.4 7.1 118 126-257 6-136 (340)
116 1ak2_A Adenylate kinase isoenz 98.3 1.1E-05 3.7E-10 80.8 16.0 165 126-306 15-230 (233)
117 3gmt_A Adenylate kinase; ssgci 98.3 1.2E-06 4.1E-11 88.3 8.6 162 129-306 10-229 (230)
118 2vp4_A Deoxynucleoside kinase; 98.3 1.3E-06 4.3E-11 87.7 8.2 67 239-306 148-224 (230)
119 1sq5_A Pantothenate kinase; P- 98.3 3.7E-07 1.3E-11 95.9 4.1 52 239-291 216-296 (308)
120 2yvu_A Probable adenylyl-sulfa 98.3 1.4E-06 4.8E-11 83.9 7.9 159 123-306 9-183 (186)
121 1cke_A CK, MSSA, protein (cyti 98.3 4.8E-06 1.6E-10 82.4 11.7 86 216-306 122-222 (227)
122 1m7g_A Adenylylsulfate kinase; 98.2 8.1E-07 2.8E-11 87.7 5.9 156 122-307 20-203 (211)
123 3c8u_A Fructokinase; YP_612366 98.2 7.2E-07 2.4E-11 87.9 4.2 70 218-290 125-207 (208)
124 3tmk_A Thymidylate kinase; pho 98.2 3.4E-06 1.2E-10 84.2 8.8 166 126-306 4-202 (216)
125 2jeo_A Uridine-cytidine kinase 98.2 1.6E-05 5.3E-10 80.4 13.5 89 217-308 134-237 (245)
126 3uie_A Adenylyl-sulfate kinase 98.2 2.6E-06 9E-11 83.2 7.4 154 124-307 22-195 (200)
127 3r20_A Cytidylate kinase; stru 98.2 6.1E-06 2.1E-10 83.4 10.1 84 218-306 129-227 (233)
128 2p5t_B PEZT; postsegregational 98.2 8.3E-06 2.8E-10 82.9 11.2 119 125-259 30-157 (253)
129 3ch4_B Pmkase, phosphomevalona 98.1 1.2E-06 4E-11 86.5 4.4 164 126-307 10-190 (202)
130 1m8p_A Sulfate adenylyltransfe 98.1 1.1E-06 3.9E-11 99.9 4.9 200 80-307 328-567 (573)
131 1zp6_A Hypothetical protein AT 98.1 1.2E-06 4.2E-11 84.3 4.4 162 125-309 7-178 (191)
132 1p5z_B DCK, deoxycytidine kina 98.1 2.8E-06 9.7E-11 86.7 6.6 43 108-153 8-50 (263)
133 1dek_A Deoxynucleoside monopho 98.1 4.6E-07 1.6E-11 92.1 0.3 66 239-306 169-240 (241)
134 1x6v_B Bifunctional 3'-phospho 98.0 1.8E-05 6.1E-10 90.6 11.1 156 125-308 50-224 (630)
135 2bbw_A Adenylate kinase 4, AK4 97.9 6.5E-05 2.2E-09 75.6 12.1 26 126-151 26-51 (246)
136 3cr8_A Sulfate adenylyltranfer 97.9 1.4E-05 4.7E-10 90.6 7.1 27 125-151 367-393 (552)
137 3tqc_A Pantothenate kinase; bi 97.9 1.6E-06 5.5E-11 91.7 -0.8 27 125-151 90-116 (321)
138 3aez_A Pantothenate kinase; tr 97.8 3.6E-06 1.2E-10 88.7 1.0 28 124-151 87-114 (312)
139 3h0g_F DNA-directed RNA polyme 97.8 1.5E-05 5.1E-10 72.2 3.9 52 319-370 70-121 (142)
140 2ocp_A DGK, deoxyguanosine kin 97.8 2.8E-05 9.7E-10 78.1 6.5 28 127-154 2-29 (241)
141 1qkl_A RPB6, DNA-directed RNA 97.7 9.8E-06 3.4E-10 72.5 2.3 53 318-370 51-103 (127)
142 2axn_A 6-phosphofructo-2-kinas 97.6 0.00044 1.5E-08 77.7 13.9 28 124-151 32-59 (520)
143 1twf_F ABC23, DNA-directed RNA 97.6 3.2E-05 1.1E-09 71.3 3.6 52 319-370 80-131 (155)
144 4gp7_A Metallophosphoesterase; 97.1 0.0049 1.7E-07 58.4 12.9 84 213-297 69-163 (171)
145 1np6_A Molybdopterin-guanine d 97.1 0.00014 4.7E-09 70.1 1.5 45 126-170 5-49 (174)
146 1bif_A 6-phosphofructo-2-kinas 96.6 0.0079 2.7E-07 66.5 11.2 28 123-150 35-62 (469)
147 1xjc_A MOBB protein homolog; s 96.6 0.00063 2.1E-08 65.2 1.6 25 127-151 4-28 (169)
148 1g8f_A Sulfate adenylyltransfe 96.4 0.0015 5.3E-08 73.0 3.6 72 80-151 326-419 (511)
149 1odf_A YGR205W, hypothetical 3 95.9 0.0042 1.4E-07 64.5 3.8 28 124-151 28-55 (290)
150 3ec2_A DNA replication protein 95.8 0.0056 1.9E-07 58.0 4.0 26 125-150 36-61 (180)
151 2gza_A Type IV secretion syste 95.7 0.045 1.5E-06 58.4 10.8 28 125-152 173-200 (361)
152 1ye8_A Protein THEP1, hypothet 95.6 0.0059 2E-07 58.6 3.3 23 129-151 2-24 (178)
153 3tif_A Uncharacterized ABC tra 95.6 0.0063 2.2E-07 61.1 3.6 29 124-152 28-56 (235)
154 2qmh_A HPR kinase/phosphorylas 95.5 0.009 3.1E-07 58.7 4.0 27 126-152 33-59 (205)
155 1htw_A HI0065; nucleotide-bind 95.4 0.0086 3E-07 56.4 3.7 28 125-152 31-58 (158)
156 2ehv_A Hypothetical protein PH 95.4 0.0078 2.7E-07 59.6 3.3 24 125-148 28-51 (251)
157 2f1r_A Molybdopterin-guanine d 95.3 0.0036 1.2E-07 59.9 0.7 25 127-151 2-26 (171)
158 2eyu_A Twitching motility prot 95.3 0.0091 3.1E-07 60.9 3.7 28 124-151 22-49 (261)
159 2pcj_A ABC transporter, lipopr 95.3 0.007 2.4E-07 60.3 2.7 27 125-151 28-54 (224)
160 2cbz_A Multidrug resistance-as 95.3 0.0087 3E-07 60.1 3.3 28 124-151 28-55 (237)
161 1mv5_A LMRA, multidrug resista 95.2 0.011 3.7E-07 59.5 3.8 28 124-151 25-52 (243)
162 1b0u_A Histidine permease; ABC 95.2 0.009 3.1E-07 61.0 3.2 29 124-152 29-57 (262)
163 4g1u_C Hemin import ATP-bindin 95.2 0.0088 3E-07 61.2 3.0 27 125-151 35-61 (266)
164 4a74_A DNA repair and recombin 95.2 0.0087 3E-07 58.4 2.9 26 125-150 23-48 (231)
165 3gfo_A Cobalt import ATP-bindi 95.2 0.009 3.1E-07 61.5 3.1 28 125-152 32-59 (275)
166 2ff7_A Alpha-hemolysin translo 95.1 0.01 3.5E-07 60.0 3.4 28 125-152 33-60 (247)
167 2pze_A Cystic fibrosis transme 95.1 0.011 3.8E-07 59.0 3.5 28 125-152 32-59 (229)
168 2v9p_A Replication protein E1; 95.1 0.011 3.6E-07 61.9 3.4 30 122-151 121-150 (305)
169 3nh6_A ATP-binding cassette SU 95.1 0.012 4E-07 61.6 3.8 29 124-152 77-105 (306)
170 2d2e_A SUFC protein; ABC-ATPas 95.0 0.011 3.7E-07 59.9 3.3 26 125-150 27-52 (250)
171 2ixe_A Antigen peptide transpo 95.0 0.012 4.2E-07 60.3 3.6 29 124-152 42-70 (271)
172 1g6h_A High-affinity branched- 95.0 0.01 3.6E-07 60.2 3.1 27 125-151 31-57 (257)
173 2olj_A Amino acid ABC transpor 95.0 0.011 3.7E-07 60.5 3.2 28 125-152 48-75 (263)
174 2ghi_A Transport protein; mult 95.0 0.012 4.2E-07 59.9 3.5 28 124-151 43-70 (260)
175 1ji0_A ABC transporter; ATP bi 95.0 0.012 4.2E-07 59.1 3.4 27 125-151 30-56 (240)
176 1jbk_A CLPB protein; beta barr 95.0 0.022 7.4E-07 53.1 5.0 26 126-151 42-67 (195)
177 3b85_A Phosphate starvation-in 95.0 0.011 3.8E-07 58.2 3.1 26 125-150 20-45 (208)
178 1vpl_A ABC transporter, ATP-bi 95.0 0.011 3.9E-07 60.1 3.2 28 124-151 38-65 (256)
179 3kzg_A Arginine 3RD transport 95.0 0.13 4.5E-06 49.7 10.8 120 393-537 42-165 (237)
180 1sgw_A Putative ABC transporte 94.9 0.0098 3.3E-07 58.9 2.6 27 125-151 33-59 (214)
181 2zu0_C Probable ATP-dependent 94.9 0.013 4.5E-07 59.9 3.5 27 124-150 43-69 (267)
182 2kjq_A DNAA-related protein; s 94.9 0.013 4.3E-07 54.5 3.0 26 126-151 35-60 (149)
183 2qi9_C Vitamin B12 import ATP- 94.8 0.015 5E-07 59.0 3.5 28 124-151 23-50 (249)
184 3czq_A Putative polyphosphate 94.8 0.53 1.8E-05 48.9 15.3 40 126-166 85-124 (304)
185 1nij_A Hypothetical protein YJ 94.8 0.015 5.3E-07 60.8 3.7 25 127-151 4-28 (318)
186 2yz2_A Putative ABC transporte 94.8 0.016 5.3E-07 59.3 3.6 29 124-152 30-58 (266)
187 2onk_A Molybdate/tungstate ABC 94.8 0.015 5.1E-07 58.6 3.4 27 125-152 23-49 (240)
188 2nq2_C Hypothetical ABC transp 94.7 0.015 5.2E-07 58.9 3.4 28 125-152 29-56 (253)
189 2ihy_A ABC transporter, ATP-bi 94.7 0.016 5.4E-07 59.8 3.5 28 125-152 45-72 (279)
190 3del_B Arginine binding protei 94.6 0.21 7.2E-06 48.2 11.1 146 426-576 62-210 (242)
191 2gj8_A MNME, tRNA modification 94.6 0.023 7.9E-07 53.3 4.0 25 127-151 4-28 (172)
192 2p65_A Hypothetical protein PF 94.6 0.024 8.3E-07 52.8 4.1 26 126-151 42-67 (187)
193 1rj9_A FTSY, signal recognitio 94.6 0.018 6.2E-07 60.1 3.5 26 126-151 101-126 (304)
194 2i3b_A HCR-ntpase, human cance 94.5 0.015 5.2E-07 56.3 2.7 23 128-150 2-24 (189)
195 3e70_C DPA, signal recognition 94.4 0.021 7.2E-07 60.3 3.8 27 125-151 127-153 (328)
196 1mky_A Probable GTP-binding pr 94.4 0.016 5.6E-07 63.4 3.0 52 127-178 180-233 (439)
197 2dyk_A GTP-binding protein; GT 94.4 0.027 9.1E-07 51.2 4.0 24 128-151 2-25 (161)
198 3tui_C Methionine import ATP-b 94.4 0.019 6.6E-07 61.4 3.5 27 125-151 52-78 (366)
199 2w0m_A SSO2452; RECA, SSPF, un 94.4 0.02 6.8E-07 55.7 3.3 26 125-150 21-46 (235)
200 3b9q_A Chloroplast SRP recepto 94.4 0.022 7.6E-07 59.3 3.7 27 125-151 98-124 (302)
201 1of1_A Thymidine kinase; trans 94.3 0.02 6.8E-07 61.5 3.3 30 123-152 45-74 (376)
202 3fvq_A Fe(3+) IONS import ATP- 94.3 0.018 6.2E-07 61.5 2.9 27 125-151 28-54 (359)
203 3rlf_A Maltose/maltodextrin im 94.3 0.021 7.3E-07 61.5 3.5 28 125-152 27-54 (381)
204 2cvh_A DNA repair and recombin 94.3 0.023 7.8E-07 55.0 3.4 25 125-149 18-42 (220)
205 3iev_A GTP-binding protein ERA 94.3 0.03 1E-06 58.3 4.4 40 125-164 8-47 (308)
206 2yyz_A Sugar ABC transporter, 94.3 0.022 7.5E-07 60.9 3.4 27 125-151 27-53 (359)
207 2pjz_A Hypothetical protein ST 94.2 0.021 7.2E-07 58.3 3.1 28 124-152 28-55 (263)
208 2it1_A 362AA long hypothetical 94.2 0.023 8E-07 60.8 3.5 27 125-151 27-53 (362)
209 1z47_A CYSA, putative ABC-tran 94.2 0.022 7.5E-07 60.8 3.3 27 125-151 39-65 (355)
210 2bbs_A Cystic fibrosis transme 94.2 0.021 7.2E-07 59.2 3.0 29 124-152 61-89 (290)
211 1v43_A Sugar-binding transport 94.2 0.024 8.2E-07 60.9 3.5 27 125-151 35-61 (372)
212 2yv5_A YJEQ protein; hydrolase 94.1 0.028 9.6E-07 58.4 3.8 24 127-151 165-188 (302)
213 3bos_A Putative DNA replicatio 94.1 0.026 8.9E-07 55.0 3.4 26 126-151 51-76 (242)
214 2wji_A Ferrous iron transport 94.0 0.029 9.9E-07 52.0 3.4 24 127-150 3-26 (165)
215 1g29_1 MALK, maltose transport 94.0 0.025 8.5E-07 60.8 3.3 27 125-151 27-53 (372)
216 1svm_A Large T antigen; AAA+ f 94.0 0.027 9.3E-07 60.6 3.5 28 124-151 166-193 (377)
217 1n0w_A DNA repair protein RAD5 93.9 0.028 9.7E-07 55.2 3.3 26 125-150 22-47 (243)
218 2ewv_A Twitching motility prot 93.9 0.03 1E-06 60.1 3.6 28 124-151 133-160 (372)
219 2wjg_A FEOB, ferrous iron tran 93.9 0.034 1.2E-06 52.2 3.6 25 126-150 6-30 (188)
220 2qm8_A GTPase/ATPase; G protei 93.9 0.034 1.2E-06 58.8 4.0 26 125-150 53-78 (337)
221 2www_A Methylmalonic aciduria 93.9 0.035 1.2E-06 58.9 4.1 26 125-150 72-97 (349)
222 3pqc_A Probable GTP-binding pr 93.9 0.038 1.3E-06 51.9 3.9 26 126-151 22-47 (195)
223 1xs5_A 29 kDa protein, membran 93.8 0.1 3.4E-06 52.6 7.2 169 382-586 20-226 (241)
224 2ozz_A Hypothetical protein YH 93.8 0.19 6.6E-06 50.2 9.2 175 384-589 34-219 (231)
225 3d31_A Sulfate/molybdate ABC t 93.8 0.021 7.1E-07 60.8 2.2 27 125-151 24-50 (348)
226 2w58_A DNAI, primosome compone 93.8 0.032 1.1E-06 53.6 3.3 23 128-150 55-77 (202)
227 1njg_A DNA polymerase III subu 93.8 0.034 1.2E-06 53.7 3.4 25 127-151 45-69 (250)
228 3jvv_A Twitching mobility prot 93.7 0.034 1.2E-06 59.3 3.7 26 126-151 122-147 (356)
229 3sop_A Neuronal-specific septi 93.7 0.026 8.8E-07 57.8 2.6 24 128-151 3-26 (270)
230 3qf4_B Uncharacterized ABC tra 93.7 0.044 1.5E-06 62.5 4.8 29 124-152 378-406 (598)
231 2og2_A Putative signal recogni 93.7 0.035 1.2E-06 59.3 3.7 27 125-151 155-181 (359)
232 1lv7_A FTSH; alpha/beta domain 93.7 0.039 1.4E-06 55.2 3.9 25 127-151 45-69 (257)
233 3gd7_A Fusion complex of cysti 93.7 0.029 9.8E-07 60.7 2.9 28 124-151 44-71 (390)
234 1lw7_A Transcriptional regulat 93.6 0.029 9.9E-07 59.7 2.9 26 127-152 170-195 (365)
235 3ksx_A Nitrate transport prote 93.6 0.97 3.3E-05 46.4 14.4 124 385-532 49-187 (324)
236 3t15_A Ribulose bisphosphate c 93.6 0.031 1.1E-06 57.7 2.9 27 125-151 34-60 (293)
237 2pt7_A CAG-ALFA; ATPase, prote 93.5 0.025 8.6E-07 59.6 2.2 28 125-152 169-196 (330)
238 1d2n_A N-ethylmaleimide-sensit 93.5 0.05 1.7E-06 55.0 4.4 27 125-151 62-88 (272)
239 2rcn_A Probable GTPase ENGC; Y 93.5 0.035 1.2E-06 59.2 3.4 26 126-151 214-239 (358)
240 1vma_A Cell division protein F 93.5 0.042 1.4E-06 57.4 3.8 27 125-151 102-128 (306)
241 1oxx_K GLCV, glucose, ABC tran 93.5 0.02 7E-07 61.0 1.4 28 124-151 28-55 (353)
242 2qz4_A Paraplegin; AAA+, SPG7, 93.5 0.04 1.4E-06 54.9 3.5 26 126-151 38-63 (262)
243 2zr9_A Protein RECA, recombina 93.4 0.02 6.7E-07 61.0 1.2 26 125-150 59-84 (349)
244 1ega_A Protein (GTP-binding pr 93.4 0.036 1.2E-06 57.5 3.1 25 126-150 7-31 (301)
245 1ixz_A ATP-dependent metallopr 93.4 0.036 1.2E-06 55.4 3.0 22 130-151 52-73 (254)
246 1in4_A RUVB, holliday junction 93.4 0.033 1.1E-06 58.5 2.8 25 127-151 51-75 (334)
247 1pui_A ENGB, probable GTP-bind 93.4 0.025 8.4E-07 54.4 1.7 27 124-150 23-49 (210)
248 2yhs_A FTSY, cell division pro 93.4 0.044 1.5E-06 60.9 3.9 28 124-151 290-317 (503)
249 3tqf_A HPR(Ser) kinase; transf 93.4 0.042 1.4E-06 52.7 3.2 27 126-152 15-41 (181)
250 3qf4_A ABC transporter, ATP-bi 93.3 0.046 1.6E-06 62.2 4.1 28 125-152 367-394 (587)
251 3kta_A Chromosome segregation 93.3 0.039 1.3E-06 52.0 3.0 24 127-150 26-49 (182)
252 2yl4_A ATP-binding cassette SU 93.3 0.059 2E-06 61.3 4.9 28 125-152 368-395 (595)
253 1oix_A RAS-related protein RAB 93.3 0.038 1.3E-06 52.7 2.9 25 127-151 29-53 (191)
254 1ni3_A YCHF GTPase, YCHF GTP-b 93.3 0.04 1.4E-06 59.5 3.3 44 125-168 18-61 (392)
255 1t9h_A YLOQ, probable GTPase E 93.3 0.013 4.6E-07 61.2 -0.4 26 126-151 172-197 (307)
256 1cr0_A DNA primase/helicase; R 93.3 0.037 1.3E-06 56.8 2.9 27 124-150 32-58 (296)
257 2nzj_A GTP-binding protein REM 93.3 0.026 8.7E-07 52.1 1.5 25 127-151 4-28 (175)
258 2ged_A SR-beta, signal recogni 93.2 0.054 1.9E-06 51.1 3.9 26 126-151 47-72 (193)
259 3b9p_A CG5977-PA, isoform A; A 93.2 0.043 1.5E-06 56.1 3.3 26 126-151 53-78 (297)
260 3n70_A Transport activator; si 93.2 0.042 1.4E-06 50.3 2.9 26 126-151 23-48 (145)
261 3b60_A Lipid A export ATP-bind 93.2 0.058 2E-06 61.2 4.7 28 125-152 367-394 (582)
262 2x8a_A Nuclear valosin-contain 93.2 0.039 1.3E-06 56.4 3.0 22 130-151 47-68 (274)
263 3cf0_A Transitional endoplasmi 93.2 0.045 1.5E-06 56.6 3.4 27 125-151 47-73 (301)
264 4a82_A Cystic fibrosis transme 93.2 0.044 1.5E-06 62.2 3.6 29 124-152 364-392 (578)
265 3qax_A Probable ABC transporte 93.2 0.23 7.8E-06 48.6 8.4 146 426-576 82-231 (268)
266 3ozx_A RNAse L inhibitor; ATP 93.1 0.046 1.6E-06 61.5 3.7 29 123-151 21-49 (538)
267 1u0l_A Probable GTPase ENGC; p 93.1 0.041 1.4E-06 57.0 3.1 25 127-151 169-193 (301)
268 1e2k_A Thymidine kinase; trans 93.1 0.042 1.4E-06 58.0 3.0 27 126-152 3-29 (331)
269 3h4m_A Proteasome-activating n 93.0 0.049 1.7E-06 55.2 3.4 26 126-151 50-75 (285)
270 1p99_A Hypothetical protein PG 93.0 0.17 6E-06 52.3 7.6 176 383-587 56-267 (295)
271 1p9r_A General secretion pathw 93.0 0.052 1.8E-06 59.2 3.7 27 125-151 165-191 (418)
272 2lkc_A Translation initiation 93.0 0.061 2.1E-06 49.7 3.8 27 125-151 6-32 (178)
273 2f9l_A RAB11B, member RAS onco 93.0 0.054 1.8E-06 51.7 3.4 24 128-151 6-29 (199)
274 2wsm_A Hydrogenase expression/ 93.0 0.043 1.5E-06 53.2 2.8 25 126-150 29-53 (221)
275 1wf3_A GTP-binding protein; GT 93.0 0.063 2.1E-06 55.8 4.1 25 127-151 7-31 (301)
276 2hf9_A Probable hydrogenase ni 92.9 0.049 1.7E-06 53.0 3.1 25 126-150 37-61 (226)
277 3b5x_A Lipid A export ATP-bind 92.9 0.054 1.8E-06 61.5 3.7 27 125-151 367-393 (582)
278 2qag_B Septin-6, protein NEDD5 92.8 0.051 1.8E-06 59.3 3.3 26 125-150 38-65 (427)
279 3syl_A Protein CBBX; photosynt 92.8 0.065 2.2E-06 54.9 3.9 27 125-151 65-91 (309)
280 1iy2_A ATP-dependent metallopr 92.7 0.052 1.8E-06 55.2 3.0 22 130-151 76-97 (278)
281 1c9k_A COBU, adenosylcobinamid 92.7 0.042 1.4E-06 53.0 2.1 23 129-151 1-23 (180)
282 2zej_A Dardarin, leucine-rich 92.7 0.049 1.7E-06 51.4 2.6 23 128-150 3-25 (184)
283 1kao_A RAP2A; GTP-binding prot 92.6 0.071 2.4E-06 48.3 3.5 23 128-150 4-26 (167)
284 1nlf_A Regulatory protein REPA 92.6 0.049 1.7E-06 55.4 2.7 25 125-149 28-52 (279)
285 2yjp_A Putative ABC transporte 92.6 0.94 3.2E-05 45.6 12.4 166 379-576 84-254 (291)
286 4ef1_A Pheromone COB1/lipoprot 92.6 0.42 1.4E-05 48.2 9.4 173 382-586 21-231 (246)
287 1u8z_A RAS-related protein RAL 92.6 0.075 2.6E-06 48.2 3.7 25 127-151 4-28 (168)
288 3q72_A GTP-binding protein RAD 92.6 0.04 1.4E-06 50.4 1.8 22 129-150 4-25 (166)
289 3uif_A Sulfonate ABC transport 92.5 0.56 1.9E-05 48.8 10.9 132 377-532 29-175 (348)
290 2chg_A Replication factor C sm 92.5 0.059 2E-06 51.4 3.0 22 129-150 40-61 (226)
291 2hjg_A GTP-binding protein ENG 92.5 0.42 1.5E-05 51.9 10.2 55 126-180 174-230 (436)
292 2npi_A Protein CLP1; CLP1-PCF1 92.4 0.045 1.5E-06 60.4 2.3 28 124-151 135-162 (460)
293 3i6v_A Periplasmic His/Glu/Gln 92.4 2 7E-05 41.2 14.1 136 426-576 56-195 (232)
294 1p6x_A Thymidine kinase; P-loo 92.4 0.055 1.9E-06 57.2 2.8 27 126-152 6-32 (334)
295 2dr3_A UPF0273 protein PH0284; 92.4 0.057 2E-06 53.1 2.8 26 125-150 21-46 (247)
296 1z2a_A RAS-related protein RAB 92.4 0.077 2.6E-06 48.3 3.5 24 127-150 5-28 (168)
297 3j16_B RLI1P; ribosome recycli 92.4 0.066 2.3E-06 61.2 3.6 27 125-151 101-127 (608)
298 2yln_A Putative ABC transporte 92.3 0.24 8.4E-06 49.8 7.5 140 426-576 108-255 (283)
299 2px0_A Flagellar biosynthesis 92.3 0.058 2E-06 56.0 2.8 25 126-150 104-128 (296)
300 2ce2_X GTPase HRAS; signaling 92.3 0.07 2.4E-06 48.2 3.1 23 128-150 4-26 (166)
301 3q85_A GTP-binding protein REM 92.3 0.067 2.3E-06 49.0 2.9 22 129-150 4-25 (169)
302 1svi_A GTP-binding protein YSX 92.2 0.08 2.7E-06 49.9 3.4 25 126-150 22-46 (195)
303 4f4c_A Multidrug resistance pr 92.2 0.086 2.9E-06 65.6 4.5 30 123-152 440-469 (1321)
304 2oap_1 GSPE-2, type II secreti 92.1 0.057 2E-06 60.4 2.7 27 126-152 259-285 (511)
305 3tql_A Arginine-binding protei 92.1 0.42 1.4E-05 45.2 8.5 107 424-535 51-163 (227)
306 2e87_A Hypothetical protein PH 92.1 0.41 1.4E-05 50.6 9.2 26 126-151 166-191 (357)
307 1yqt_A RNAse L inhibitor; ATP- 92.1 0.072 2.5E-06 59.9 3.5 28 124-151 44-71 (538)
308 1tq4_A IIGP1, interferon-induc 92.1 0.067 2.3E-06 58.2 3.0 26 126-151 68-93 (413)
309 2fn4_A P23, RAS-related protei 92.1 0.081 2.8E-06 48.8 3.3 25 126-150 8-32 (181)
310 4fcw_A Chaperone protein CLPB; 92.1 0.087 3E-06 53.9 3.8 24 128-151 48-71 (311)
311 3k4u_A Binding component of AB 92.1 0.36 1.2E-05 46.8 8.1 141 425-576 55-206 (245)
312 1l8q_A Chromosomal replication 92.1 0.059 2E-06 55.9 2.5 24 127-150 37-60 (324)
313 1ek0_A Protein (GTP-binding pr 92.1 0.078 2.7E-06 48.3 3.1 24 128-151 4-27 (170)
314 1ofh_A ATP-dependent HSL prote 92.0 0.068 2.3E-06 54.5 2.9 25 127-151 50-74 (310)
315 2xtp_A GTPase IMAP family memb 92.0 0.1 3.5E-06 52.2 4.2 26 126-151 21-46 (260)
316 1c1y_A RAS-related protein RAP 92.0 0.092 3.1E-06 47.8 3.5 23 128-150 4-26 (167)
317 1upt_A ARL1, ADP-ribosylation 91.9 0.11 3.6E-06 47.6 3.9 24 127-150 7-30 (171)
318 1wms_A RAB-9, RAB9, RAS-relate 91.9 0.083 2.8E-06 48.8 3.1 25 127-151 7-31 (177)
319 1ky3_A GTP-binding protein YPT 91.9 0.095 3.2E-06 48.4 3.5 25 127-151 8-32 (182)
320 3clv_A RAB5 protein, putative; 91.9 0.11 3.8E-06 48.7 4.0 25 127-151 7-31 (208)
321 1z0j_A RAB-22, RAS-related pro 91.9 0.085 2.9E-06 48.1 3.1 24 128-151 7-30 (170)
322 1z08_A RAS-related protein RAB 91.9 0.086 2.9E-06 48.2 3.2 24 127-150 6-29 (170)
323 2orw_A Thymidine kinase; TMTK, 91.9 0.071 2.4E-06 51.2 2.7 24 126-149 2-25 (184)
324 1pzn_A RAD51, DNA repair and r 91.9 0.071 2.4E-06 56.6 2.9 28 124-151 128-155 (349)
325 1xwi_A SKD1 protein; VPS4B, AA 91.8 0.082 2.8E-06 55.3 3.3 26 126-151 44-69 (322)
326 3lxx_A GTPase IMAP family memb 91.7 0.095 3.3E-06 51.8 3.5 27 125-151 27-53 (239)
327 2erx_A GTP-binding protein DI- 91.7 0.1 3.4E-06 47.7 3.4 23 128-150 4-26 (172)
328 1fzq_A ADP-ribosylation factor 91.7 0.088 3E-06 49.5 3.0 26 125-150 14-39 (181)
329 3kl4_A SRP54, signal recogniti 91.7 0.097 3.3E-06 57.3 3.8 25 126-150 96-120 (433)
330 1jal_A YCHF protein; nucleotid 91.6 0.13 4.5E-06 54.9 4.6 40 126-166 1-40 (363)
331 3k53_A Ferrous iron transport 91.6 0.09 3.1E-06 53.3 3.2 25 127-151 3-27 (271)
332 1f2t_A RAD50 ABC-ATPase; DNA d 91.6 0.11 3.9E-06 47.9 3.7 23 126-148 22-44 (149)
333 3hws_A ATP-dependent CLP prote 91.6 0.082 2.8E-06 56.0 3.0 26 126-151 50-75 (363)
334 1nrj_B SR-beta, signal recogni 91.6 0.11 3.7E-06 50.1 3.6 25 127-151 12-36 (218)
335 1g16_A RAS-related protein SEC 91.5 0.081 2.8E-06 48.3 2.6 24 128-151 4-27 (170)
336 2r62_A Cell division protease 91.5 0.05 1.7E-06 54.7 1.2 25 127-151 44-68 (268)
337 2y8e_A RAB-protein 6, GH09086P 91.5 0.084 2.9E-06 48.6 2.7 24 127-150 14-37 (179)
338 1fnn_A CDC6P, cell division co 91.5 0.094 3.2E-06 55.2 3.4 24 128-151 45-68 (389)
339 4dcu_A GTP-binding protein ENG 91.5 0.054 1.8E-06 59.5 1.5 25 126-150 22-46 (456)
340 3p32_A Probable GTPase RV1496/ 91.4 0.11 3.8E-06 55.1 3.8 26 125-150 77-102 (355)
341 1r2q_A RAS-related protein RAB 91.4 0.098 3.3E-06 47.6 3.0 24 127-150 6-29 (170)
342 2hxs_A RAB-26, RAS-related pro 91.4 0.13 4.4E-06 47.5 3.8 24 127-150 6-29 (178)
343 1zu4_A FTSY; GTPase, signal re 91.4 0.1 3.6E-06 54.7 3.5 27 125-151 103-129 (320)
344 3uk6_A RUVB-like 2; hexameric 91.4 0.083 2.8E-06 55.5 2.8 25 127-151 70-94 (368)
345 3ozx_A RNAse L inhibitor; ATP 91.4 0.088 3E-06 59.2 3.2 27 125-151 292-318 (538)
346 4f4c_A Multidrug resistance pr 91.4 0.068 2.3E-06 66.5 2.4 52 124-185 1102-1153(1321)
347 3eie_A Vacuolar protein sortin 91.3 0.096 3.3E-06 54.5 3.2 26 126-151 50-75 (322)
348 3tw8_B RAS-related protein RAB 91.3 0.096 3.3E-06 48.3 2.9 24 127-150 9-32 (181)
349 3bc1_A RAS-related protein RAB 91.3 0.099 3.4E-06 48.8 3.0 24 127-150 11-34 (195)
350 1osn_A Thymidine kinase, VZV-T 91.3 0.093 3.2E-06 55.6 3.1 28 125-152 10-38 (341)
351 1tue_A Replication protein E1; 91.3 0.087 3E-06 51.9 2.6 25 127-151 58-82 (212)
352 3euj_A Chromosome partition pr 91.3 0.094 3.2E-06 58.1 3.2 24 128-151 30-53 (483)
353 3mpk_A Virulence sensor protei 91.3 1.7 5.7E-05 42.9 12.2 153 393-576 70-231 (267)
354 2qby_A CDC6 homolog 1, cell di 91.3 0.079 2.7E-06 55.5 2.5 26 125-150 43-68 (386)
355 4dsu_A GTPase KRAS, isoform 2B 91.3 0.12 4E-06 48.2 3.4 25 127-151 4-28 (189)
356 1r8s_A ADP-ribosylation factor 91.2 0.11 3.6E-06 47.4 3.0 22 129-150 2-23 (164)
357 2a9k_A RAS-related protein RAL 91.2 0.12 4.2E-06 47.9 3.5 25 127-151 18-42 (187)
358 2oil_A CATX-8, RAS-related pro 91.2 0.12 4.3E-06 48.6 3.5 25 127-151 25-49 (193)
359 1u94_A RECA protein, recombina 91.1 0.11 3.6E-06 55.5 3.3 26 125-150 61-86 (356)
360 2r2a_A Uncharacterized protein 91.1 0.12 4.1E-06 50.4 3.4 22 127-148 5-26 (199)
361 3bk7_A ABC transporter ATP-bin 91.1 0.1 3.6E-06 59.5 3.4 27 125-151 115-141 (607)
362 2bov_A RAla, RAS-related prote 91.0 0.13 4.6E-06 48.7 3.7 25 127-151 14-38 (206)
363 1z0f_A RAB14, member RAS oncog 91.0 0.11 3.9E-06 47.7 3.1 25 127-151 15-39 (179)
364 3gxa_A Outer membrane lipoprot 91.0 6.7 0.00023 40.0 16.4 179 383-606 42-259 (275)
365 3gee_A MNME, tRNA modification 91.0 0.43 1.5E-05 52.8 8.2 38 128-165 234-271 (476)
366 1moz_A ARL1, ADP-ribosylation 91.0 0.082 2.8E-06 49.2 2.1 26 125-150 16-41 (183)
367 2g6b_A RAS-related protein RAB 91.0 0.17 5.8E-06 46.7 4.2 25 127-151 10-34 (180)
368 1sxj_E Activator 1 40 kDa subu 91.0 0.099 3.4E-06 54.6 2.9 21 130-150 39-59 (354)
369 2v1u_A Cell division control p 91.0 0.09 3.1E-06 55.1 2.6 27 125-151 42-68 (387)
370 3t5g_A GTP-binding protein RHE 91.0 0.1 3.5E-06 48.5 2.7 25 126-150 5-29 (181)
371 3con_A GTPase NRAS; structural 90.9 0.13 4.3E-06 48.3 3.4 24 127-150 21-44 (190)
372 2p67_A LAO/AO transport system 90.9 0.12 4.2E-06 54.4 3.6 26 125-150 54-79 (341)
373 3g5u_A MCG1178, multidrug resi 90.9 0.14 4.7E-06 63.6 4.4 29 124-152 413-441 (1284)
374 2qtf_A Protein HFLX, GTP-bindi 90.9 0.11 3.8E-06 55.4 3.2 25 127-151 179-203 (364)
375 3b1v_A Ferrous iron uptake tra 90.9 0.13 4.4E-06 52.6 3.5 24 127-150 3-26 (272)
376 3ihw_A Centg3; RAS, centaurin, 90.9 0.15 5E-06 48.2 3.7 25 126-150 19-43 (184)
377 3bwd_D RAC-like GTP-binding pr 90.8 0.21 7.2E-06 46.2 4.7 24 127-150 8-31 (182)
378 1um8_A ATP-dependent CLP prote 90.8 0.15 5.1E-06 54.2 4.1 26 126-151 71-96 (376)
379 2b6h_A ADP-ribosylation factor 90.8 0.13 4.5E-06 48.8 3.4 26 125-150 27-52 (192)
380 2bjv_A PSP operon transcriptio 90.8 0.12 4.1E-06 51.8 3.2 26 127-152 29-54 (265)
381 3co5_A Putative two-component 90.8 0.048 1.6E-06 49.8 0.2 25 127-151 27-51 (143)
382 3kkq_A RAS-related protein M-R 90.8 0.15 5.2E-06 47.4 3.7 24 127-150 18-41 (183)
383 4ayb_K DNA-directed RNA polyme 90.8 0.19 6.5E-06 43.0 3.8 46 325-370 28-75 (95)
384 3m6a_A ATP-dependent protease 90.8 0.12 4E-06 58.3 3.3 26 126-151 107-132 (543)
385 1puj_A YLQF, conserved hypothe 90.7 0.14 4.7E-06 52.7 3.6 39 126-164 119-157 (282)
386 4bas_A ADP-ribosylation factor 90.7 0.13 4.5E-06 48.4 3.3 27 125-151 15-41 (199)
387 3t1o_A Gliding protein MGLA; G 90.7 0.14 4.6E-06 48.0 3.3 26 127-152 14-39 (198)
388 1ko7_A HPR kinase/phosphatase; 90.7 0.12 4.2E-06 54.0 3.3 27 126-152 143-169 (314)
389 2efe_B Small GTP-binding prote 90.7 0.14 4.9E-06 47.3 3.5 23 128-150 13-35 (181)
390 2cxx_A Probable GTP-binding pr 90.7 0.096 3.3E-06 48.9 2.2 23 129-151 3-25 (190)
391 3lxw_A GTPase IMAP family memb 90.7 0.17 5.9E-06 50.6 4.2 25 127-151 21-45 (247)
392 1yqt_A RNAse L inhibitor; ATP- 90.7 0.12 4.1E-06 58.2 3.3 26 126-151 311-336 (538)
393 2vf7_A UVRA2, excinuclease ABC 90.7 0.093 3.2E-06 62.0 2.5 22 124-145 33-54 (842)
394 4dhe_A Probable GTP-binding pr 90.6 0.076 2.6E-06 51.4 1.5 26 126-151 28-53 (223)
395 1sxj_C Activator 1 40 kDa subu 90.6 0.11 3.7E-06 54.4 2.8 22 130-151 49-70 (340)
396 3pfi_A Holliday junction ATP-d 90.6 0.16 5.4E-06 52.8 4.0 25 127-151 55-79 (338)
397 1ksh_A ARF-like protein 2; sma 90.6 0.14 4.9E-06 47.8 3.3 25 126-150 17-41 (186)
398 2atv_A RERG, RAS-like estrogen 90.6 0.16 5.5E-06 48.1 3.7 24 127-150 28-51 (196)
399 2bme_A RAB4A, RAS-related prot 90.5 0.11 3.9E-06 48.3 2.6 24 127-150 10-33 (186)
400 1mh1_A RAC1; GTP-binding, GTPa 90.5 0.15 5.2E-06 47.2 3.5 24 127-150 5-28 (186)
401 3geh_A MNME, tRNA modification 90.5 0.46 1.6E-05 52.3 7.8 24 127-150 224-247 (462)
402 3d8b_A Fidgetin-like protein 1 90.5 0.13 4.4E-06 54.5 3.2 26 126-151 116-141 (357)
403 1z06_A RAS-related protein RAB 90.5 0.15 5.2E-06 47.9 3.5 24 127-150 20-43 (189)
404 4b4t_K 26S protease regulatory 90.5 0.14 4.6E-06 56.0 3.5 27 125-151 204-230 (428)
405 3bk7_A ABC transporter ATP-bin 90.5 0.13 4.3E-06 58.9 3.3 26 126-151 381-406 (607)
406 3cnl_A YLQF, putative uncharac 90.5 0.14 4.7E-06 52.1 3.3 37 128-164 100-136 (262)
407 2cjw_A GTP-binding protein GEM 90.4 0.19 6.6E-06 47.8 4.1 23 128-150 7-29 (192)
408 3tkl_A RAS-related protein RAB 90.4 0.17 5.6E-06 47.6 3.7 24 128-151 17-40 (196)
409 2qby_B CDC6 homolog 3, cell di 90.4 0.13 4.3E-06 54.3 3.1 25 126-150 44-68 (384)
410 1vg8_A RAS-related protein RAB 90.4 0.16 5.4E-06 48.3 3.5 25 127-151 8-32 (207)
411 4b4t_M 26S protease regulatory 90.4 0.14 4.7E-06 56.1 3.4 27 125-151 213-239 (434)
412 1m7b_A RND3/RHOE small GTP-bin 90.4 0.14 4.6E-06 48.1 3.0 24 127-150 7-30 (184)
413 3kbr_A Cyclohexadienyl dehydra 90.3 0.42 1.4E-05 46.0 6.6 142 426-576 66-215 (239)
414 1ls1_A Signal recognition part 90.3 0.16 5.4E-06 52.6 3.6 26 126-151 97-122 (295)
415 3j16_B RLI1P; ribosome recycli 90.3 0.13 4.6E-06 58.6 3.4 24 128-151 379-402 (608)
416 3lda_A DNA repair protein RAD5 90.3 0.12 3.9E-06 56.1 2.7 23 126-148 177-199 (400)
417 2gf9_A RAS-related protein RAB 90.3 0.14 4.9E-06 48.0 3.1 25 127-151 22-46 (189)
418 2qgz_A Helicase loader, putati 90.2 0.15 5.1E-06 53.0 3.4 24 127-150 152-175 (308)
419 2obl_A ESCN; ATPase, hydrolase 90.2 0.13 4.4E-06 54.6 2.9 27 125-151 69-95 (347)
420 2qu8_A Putative nucleolar GTP- 90.2 0.16 5.6E-06 49.6 3.5 25 126-150 28-52 (228)
421 2p5s_A RAS and EF-hand domain 90.2 0.17 5.8E-06 48.1 3.5 26 126-151 27-52 (199)
422 1hqc_A RUVB; extended AAA-ATPa 90.1 0.11 3.9E-06 53.4 2.4 25 127-151 38-62 (324)
423 1zbd_A Rabphilin-3A; G protein 90.1 0.15 5.1E-06 48.5 3.1 24 128-151 9-32 (203)
424 2dpy_A FLII, flagellum-specifi 90.1 0.14 4.8E-06 56.1 3.2 30 122-151 152-181 (438)
425 1m2o_B GTP-binding protein SAR 90.1 0.14 4.6E-06 48.6 2.7 24 127-150 23-46 (190)
426 2ga8_A Hypothetical 39.9 kDa p 90.1 0.16 5.4E-06 54.1 3.4 71 217-288 260-348 (359)
427 2qag_C Septin-7; cell cycle, c 90.1 0.13 4.4E-06 56.1 2.8 23 129-151 33-55 (418)
428 2qnr_A Septin-2, protein NEDD5 90.0 0.1 3.5E-06 54.1 2.0 23 128-150 19-41 (301)
429 3dm5_A SRP54, signal recogniti 90.0 0.16 5.5E-06 55.7 3.6 25 126-150 99-123 (443)
430 3oes_A GTPase rhebl1; small GT 90.0 0.14 4.9E-06 48.7 2.9 26 126-151 23-48 (201)
431 1g41_A Heat shock protein HSLU 90.0 0.18 6.1E-06 55.3 3.9 25 128-152 51-75 (444)
432 4b4t_L 26S protease subunit RP 90.0 0.16 5.3E-06 55.7 3.4 27 125-151 213-239 (437)
433 2iwr_A Centaurin gamma 1; ANK 89.9 0.16 5.4E-06 47.0 3.0 24 127-150 7-30 (178)
434 2hjg_A GTP-binding protein ENG 89.9 0.11 3.7E-06 56.7 2.0 38 128-165 4-41 (436)
435 3un6_A Hypothetical protein sa 89.9 0.18 6.2E-06 52.5 3.7 103 425-531 94-210 (341)
436 1zd9_A ADP-ribosylation factor 89.9 0.18 6.3E-06 47.4 3.5 24 127-150 22-45 (188)
437 2y7i_A STM4351; arginine-bindi 89.9 1.6 5.3E-05 41.3 10.2 146 426-576 57-206 (229)
438 1tf7_A KAIC; homohexamer, hexa 89.8 0.13 4.5E-06 57.5 2.7 23 125-147 37-59 (525)
439 2fh5_B SR-beta, signal recogni 89.8 0.18 6.1E-06 48.4 3.3 25 127-151 7-31 (214)
440 3pih_A Uvrabc system protein A 89.8 0.1 3.5E-06 62.2 2.0 21 124-144 21-41 (916)
441 1f6b_A SAR1; gtpases, N-termin 89.8 0.14 4.8E-06 48.9 2.6 24 127-150 25-48 (198)
442 1ypw_A Transitional endoplasmi 89.8 0.23 8E-06 58.5 5.0 28 125-152 236-263 (806)
443 2a5j_A RAS-related protein RAB 89.8 0.16 5.6E-06 47.8 3.0 24 128-151 22-45 (191)
444 1yrb_A ATP(GTP)binding protein 89.8 0.2 6.8E-06 49.8 3.8 26 125-150 12-37 (262)
445 3c5c_A RAS-like protein 12; GD 89.8 0.19 6.7E-06 47.3 3.5 24 127-150 21-44 (187)
446 1x3s_A RAS-related protein RAB 89.7 0.17 5.8E-06 47.4 3.1 25 127-151 15-39 (195)
447 3ux8_A Excinuclease ABC, A sub 89.7 0.094 3.2E-06 60.5 1.5 23 125-147 346-368 (670)
448 1sxj_D Activator 1 41 kDa subu 89.7 0.15 5.2E-06 52.9 3.0 21 130-150 61-81 (353)
449 1sxj_A Activator 1 95 kDa subu 89.7 0.16 5.4E-06 56.7 3.3 26 126-151 76-101 (516)
450 3i8s_A Ferrous iron transport 89.7 0.18 6E-06 51.4 3.4 25 127-151 3-27 (274)
451 2fv8_A H6, RHO-related GTP-bin 89.7 0.17 5.7E-06 48.6 3.0 25 127-151 25-49 (207)
452 2fg5_A RAB-22B, RAS-related pr 89.6 0.16 5.6E-06 47.9 2.9 25 127-151 23-47 (192)
453 1knx_A Probable HPR(Ser) kinas 89.6 0.17 5.7E-06 52.9 3.2 27 126-152 146-172 (312)
454 3szr_A Interferon-induced GTP- 89.6 0.12 3.9E-06 59.1 2.1 23 129-151 47-69 (608)
455 2v25_A Major cell-binding fact 89.6 0.73 2.5E-05 44.5 7.7 154 391-576 78-239 (259)
456 2h17_A ADP-ribosylation factor 89.6 0.15 5.1E-06 47.6 2.6 25 127-151 21-45 (181)
457 3hr8_A Protein RECA; alpha and 89.6 0.15 5.3E-06 54.3 2.9 26 125-150 59-84 (356)
458 3qf7_A RAD50; ABC-ATPase, ATPa 89.6 0.19 6.6E-06 53.5 3.7 21 128-148 24-44 (365)
459 3g5u_A MCG1178, multidrug resi 89.5 0.29 9.8E-06 60.7 5.7 28 125-152 1057-1084(1284)
460 3r7w_A Gtpase1, GTP-binding pr 89.5 0.23 7.8E-06 51.5 4.1 25 127-151 3-27 (307)
461 2ygr_A Uvrabc system protein A 89.5 0.12 4E-06 62.0 2.1 21 125-145 44-64 (993)
462 3qks_A DNA double-strand break 89.5 0.21 7.3E-06 48.5 3.7 24 126-149 22-45 (203)
463 4dcu_A GTP-binding protein ENG 89.5 0.15 5.1E-06 55.9 2.8 40 126-165 194-233 (456)
464 1jr3_A DNA polymerase III subu 89.5 0.18 6E-06 52.9 3.3 25 127-151 38-62 (373)
465 2qp9_X Vacuolar protein sortin 89.5 0.16 5.6E-06 53.8 3.0 25 127-151 84-108 (355)
466 2ohf_A Protein OLA1, GTP-bindi 89.5 0.15 5.1E-06 55.1 2.7 40 125-165 20-59 (396)
467 4i62_A Amino acid ABC transpor 89.4 2.9 0.0001 40.5 12.1 145 424-576 91-242 (269)
468 2b8t_A Thymidine kinase; deoxy 89.4 0.2 6.8E-06 49.8 3.4 26 125-150 10-35 (223)
469 2r6f_A Excinuclease ABC subuni 89.4 0.12 4E-06 61.7 2.0 21 125-145 42-62 (972)
470 2zan_A Vacuolar protein sortin 89.4 0.24 8.1E-06 54.2 4.3 26 126-151 166-191 (444)
471 2zts_A Putative uncharacterize 89.4 0.19 6.6E-06 49.3 3.3 25 125-149 28-52 (251)
472 3reg_A RHO-like small GTPase; 89.4 0.19 6.4E-06 47.5 3.1 25 127-151 23-47 (194)
473 3cbq_A GTP-binding protein REM 89.4 0.16 5.5E-06 48.5 2.7 23 127-149 23-45 (195)
474 2j37_W Signal recognition part 89.4 0.26 8.7E-06 55.0 4.6 25 126-150 100-124 (504)
475 2gf0_A GTP-binding protein DI- 89.4 0.2 6.7E-06 47.2 3.2 24 127-150 8-31 (199)
476 3a1s_A Iron(II) transport prot 89.4 0.2 6.9E-06 50.6 3.5 25 127-151 5-29 (258)
477 3dz8_A RAS-related protein RAB 89.3 0.16 5.3E-06 48.0 2.5 25 127-151 23-47 (191)
478 2o52_A RAS-related protein RAB 89.3 0.17 5.8E-06 48.3 2.8 24 127-150 25-48 (200)
479 3t34_A Dynamin-related protein 89.3 0.23 7.7E-06 52.6 4.0 23 128-150 35-57 (360)
480 2bcg_Y Protein YP2, GTP-bindin 89.3 0.16 5.5E-06 48.4 2.6 25 127-151 8-32 (206)
481 2il1_A RAB12; G-protein, GDP, 89.3 0.17 5.9E-06 47.8 2.8 23 128-150 27-49 (192)
482 3q3j_B RHO-related GTP-binding 89.2 0.22 7.6E-06 48.2 3.6 25 126-150 26-50 (214)
483 2ce7_A Cell division protein F 89.2 0.22 7.6E-06 55.1 3.9 25 127-151 49-73 (476)
484 1zj6_A ADP-ribosylation factor 89.2 0.2 6.8E-06 47.0 3.1 26 125-150 14-39 (187)
485 2z4s_A Chromosomal replication 89.2 0.16 5.4E-06 55.6 2.7 24 127-150 130-153 (440)
486 2vhj_A Ntpase P4, P4; non- hyd 89.1 0.19 6.6E-06 52.8 3.2 25 126-150 122-146 (331)
487 1v5w_A DMC1, meiotic recombina 89.1 0.22 7.6E-06 52.5 3.7 26 125-150 120-145 (343)
488 4b4t_J 26S protease regulatory 89.1 0.17 5.7E-06 54.8 2.8 26 126-151 181-206 (405)
489 1qhl_A Protein (cell division 89.1 0.035 1.2E-06 55.4 -2.4 23 128-150 28-50 (227)
490 2fu5_C RAS-related protein RAB 89.1 0.13 4.3E-06 47.9 1.6 24 127-150 8-31 (183)
491 1wdn_A GLNBP, glutamine bindin 89.1 1.2 4.2E-05 41.8 8.8 139 426-576 53-200 (226)
492 2iw3_A Elongation factor 3A; a 89.0 0.18 6.2E-06 60.4 3.3 26 124-149 458-483 (986)
493 3cph_A RAS-related protein SEC 89.0 0.24 8.1E-06 47.2 3.6 24 127-150 20-43 (213)
494 3pvs_A Replication-associated 89.0 0.24 8.3E-06 54.3 4.0 24 128-151 51-74 (447)
495 2q3h_A RAS homolog gene family 89.0 0.23 7.8E-06 47.1 3.4 25 126-150 19-43 (201)
496 1g8p_A Magnesium-chelatase 38 89.0 0.14 4.8E-06 53.2 2.0 24 129-152 47-70 (350)
497 1h65_A Chloroplast outer envel 89.0 0.27 9.1E-06 49.7 4.1 25 127-151 39-63 (270)
498 3def_A T7I23.11 protein; chlor 88.9 0.27 9.2E-06 49.5 4.0 26 126-151 35-60 (262)
499 2ew1_A RAS-related protein RAB 88.9 0.17 5.9E-06 48.7 2.5 23 128-150 27-49 (201)
500 4b4t_H 26S protease regulatory 88.9 0.2 6.8E-06 55.2 3.2 27 125-151 241-267 (467)
No 1
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=100.00 E-value=3.7e-104 Score=822.14 Aligned_cols=297 Identities=46% Similarity=0.731 Sum_probs=276.4
Q ss_pred ccchHHHHHHHHHHHHHHhhCCCceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEEeeCCCCCCCCC
Q psy11425 371 VEIRLAIWQAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLKDIPMNLP 450 (672)
Q Consensus 371 r~S~LAl~Q~~~v~~~l~~~~p~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aVHSlKD~p~~~~ 450 (672)
|+|+||+|||++|+++|++.||+++|||++|+|+||+++++||++|||||+||||||+||++|+||||||||||||+++|
T Consensus 11 R~S~LAl~Qa~~V~~~L~~~~p~~~~ei~~i~T~GD~i~d~pL~~iGgkGlFtkELe~aLl~g~iDiAVHSlKDvPt~lp 90 (313)
T 1gtk_A 11 RQSPLALWQAHYVKDKLMASHPGLVVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFP 90 (313)
T ss_dssp CCSHHHHHHHHHHHHHHHHHCTTCEEEEEECC-----------------CTTHHHHHHHHHTTSCSEEEEEGGGSCSCCC
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCcEEEEeeecCCcccccccHHHcCCccchHHHHHHHHHcCCCcEEEecCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCCCceEEecCCCCCcCCCCCCeeecCcHHHHHHHHHhCCCCeEEcccCCHHHHHhhhcCCCCCEeehh
Q psy11425 451 SGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILA 530 (672)
Q Consensus 451 ~gl~i~a~~~R~d~~D~lv~~~~~~~~~lp~~~~iGTsS~RR~~ql~~~~p~~~~~~iRGNv~tRl~kl~~g~~daiilA 530 (672)
+||.|+||++|+|||||||++++.++.+||+|++|||||+||++||+++|||++|++|||||+|||+||++|+|||||||
T Consensus 91 ~gl~l~av~~RedprDalV~~~~~~l~~LP~Ga~VGTSSlRR~aQL~~~rPdl~i~~lRGNV~TRL~KL~~g~~DaiiLA 170 (313)
T 1gtk_A 91 QGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILA 170 (313)
T ss_dssp TTEEEEEECCCCCCCEEEECSSCSSGGGCCTTCEEECCCHHHHHHHHHHCTTSEEECCCSCHHHHHHHHHTTSCSEEEEE
T ss_pred CCcEEEEEecCCCcceEEEECCCCChhhCCCCCEEecCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHhhCCCCCEEEHh
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHhhcCCCCceeeecCCCCCCCCCCCceEEEEEecCcHHHHHHhhccCChhhHHhHHHHHHHHHHhcCCCCccceeEE
Q psy11425 531 AAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAAFA 610 (672)
Q Consensus 531 ~Agl~Rl~~~~~~~~~l~~~~~~pa~gQGalave~r~~d~~~~~~l~~i~~~~t~~~~~aER~~l~~l~ggC~~pig~~a 610 (672)
+|||+|||+.++++++|+++.|+|||||||||||||++|.++.++|+.|||++|+.++.|||+||+.|+|||++|||+||
T Consensus 171 ~AGL~RLgl~~~i~~~l~~~~~lPA~gQGalaIe~r~~d~~~~~ll~~l~d~~t~~~~~aERa~l~~L~GgC~~Piga~a 250 (313)
T 1gtk_A 171 VAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEGGCQVPIGSYA 250 (313)
T ss_dssp HHHHHHTTCGGGCSEECCTTTSCCCTTTTCEEEEEETTCHHHHHHHGGGCCHHHHHHHHHHHHHHHHHTCCTTSCEEEEE
T ss_pred hhHHHHcCCccccceeeChhhcCCCcCCceEEEEEccCcHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCCCcCcceeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCeEEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHhhHHHHHHHHh
Q psy11425 611 MVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEIIKSYE 670 (672)
Q Consensus 611 ~~~~~~~~~~~l~~~~~~~dg~~~~~~~~~~~~~~~~~lg~~~a~~l~~~g~~~~l~~~~ 670 (672)
++ +|++++|+|.|+++||++.++.+..|+.++|+++|..+|++|+++|+++||.+++
T Consensus 251 ~~---~~~~l~l~g~v~s~dG~~~~~~~~~g~~~~a~~lG~~la~~ll~~ga~~il~~~~ 307 (313)
T 1gtk_A 251 EL---IDGEIWLRALVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAREILAEVY 307 (313)
T ss_dssp EE---ETTEEEEEEEEECTTSSCEEEEEEEECGGGHHHHHHHHHHHHHHTTHHHHHHTTT
T ss_pred EE---ECCEEEEEEEEEcCCCCEEEEEEEEcCHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 99 7899999999999999999999999999999999999999999999999998864
No 2
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A*
Probab=100.00 E-value=2.5e-102 Score=815.09 Aligned_cols=297 Identities=37% Similarity=0.582 Sum_probs=267.8
Q ss_pred ccchHHHHHHHHHHHHHHhhCCCceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEEeeCCCCCCCCC
Q psy11425 371 VEIRLAIWQAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLKDIPMNLP 450 (672)
Q Consensus 371 r~S~LAl~Q~~~v~~~l~~~~p~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aVHSlKD~p~~~~ 450 (672)
|+|+||+|||++|+++|++.||+++|||++|+|+||++++.||++|||||+||||||+||++|+||||||||||||+++|
T Consensus 29 R~S~LAl~Qa~~V~~~L~~~~p~~~~eiv~i~T~GD~ild~pL~~iGgKGlFtkELe~ALl~g~iDiAVHSlKDvPt~lp 108 (364)
T 3ecr_A 29 RKSQLARIQTDSVVATLKASYPGLQFEIIAMSTTGDKILDTALSKIGEKSLFTKELEHALEKNEVDLVVHSLKDLPTVLP 108 (364)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCTTSEEEEEEC-------------------CCHHHHHHHHHTTSCSEEEEEGGGSCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeeccCccccCCcHHHcCCceeeHHHHHHHHhcCCCCEEEECcccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCCCceEEecC---CCCCcCCCCCCeeecCcHHHHHHHHHhCCCCeEEcccCCHHHHHhhhcC-CCCCE
Q psy11425 451 SGFILCAILKREDPRDAFISND---YISLSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDK-GEYAA 526 (672)
Q Consensus 451 ~gl~i~a~~~R~d~~D~lv~~~---~~~~~~lp~~~~iGTsS~RR~~ql~~~~p~~~~~~iRGNv~tRl~kl~~-g~~da 526 (672)
+||.|+||++|+|||||||+++ +.+|.+||+|++|||||+||++||+++|||++|++|||||+|||+||++ |+|||
T Consensus 109 ~gl~l~av~~ReDprDalV~~~~~~~~~l~~LP~Ga~VGTSSlRR~aQL~~~rPdL~i~~lRGNV~TRL~KL~~gg~~DA 188 (364)
T 3ecr_A 109 PGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQQEFSA 188 (364)
T ss_dssp TTEEEEEECCCCCCCEEEEECTTCTTCCTTTSCTTCEEECCCHHHHHHHHHHCTTSEEECCCSCHHHHHHHHHHSSSCSE
T ss_pred CCcEEEEEcCCCCcceEEEEcCccCCCChhHCCCcCEEeCCcHHHHHHHHHHCCCCEEEECCCCHHHHHHHhhcCCCcCE
Confidence 9999999999999999999985 6789999999999999999999999999999999999999999999999 59999
Q ss_pred eehhHhhHhhcCCCCceeeecCCCCCCCCCCCceEEEEEecCcHHHHHHhhccCChhhHHhHHHHHHHHHHhcCCCCccc
Q psy11425 527 IILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISL 606 (672)
Q Consensus 527 iilA~Agl~Rl~~~~~~~~~l~~~~~~pa~gQGalave~r~~d~~~~~~l~~i~~~~t~~~~~aER~~l~~l~ggC~~pi 606 (672)
||||+|||+|||+.++|+++|+++.|+|||||||||||||++|.++.++|+.|||++|+.+|.|||+||+.|+|||++||
T Consensus 189 iILA~AGL~RLgl~~~i~~~l~~~~~lPA~gQGaLaIe~R~~D~~~~~ll~~l~d~~T~~~v~AERa~l~~L~GGC~~PI 268 (364)
T 3ecr_A 189 IILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHDPETLLRCIAERAFLRHLEGGCSVPV 268 (364)
T ss_dssp EEEEHHHHHHTTCGGGCCEECCTTTCCBCTTTTCEEEEEETTCHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC--CCSSE
T ss_pred EEehhhHHhhcCCchheeEecChhhcCCccccceeEEEEecCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCeEEEEEEEEcCCCcEEEEEEEecC-----------------------------CCcHHHHHHHHHHHH
Q psy11425 607 AAFAMVNNFNESEINLRAIITNPNGLKIITAEVNGP-----------------------------IDTPETVGLYAAELL 657 (672)
Q Consensus 607 g~~a~~~~~~~~~~~l~~~~~~~dg~~~~~~~~~~~-----------------------------~~~~~~lg~~~a~~l 657 (672)
|+||++ ++++|+|+|.|+++||++.++.+..++ .++|++||..+|++|
T Consensus 269 ga~a~~---~~~~l~l~g~v~s~DG~~~i~~~~~g~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~lG~~lA~~L 345 (364)
T 3ecr_A 269 AVHTAM---KDGQLYLTGGVWSLDGSDSIQETMQATIHVPAQHEDGPEDDPQLVGITARNIPRGPQLAAQNLGISLANLL 345 (364)
T ss_dssp EEEEEE---ETTEEEEEEEEECTTSCSEEEEEEEEECCCCCSCCCCCTTCCCBTTBCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEE---ECCEEEEEEEEECCCCCEEEEEEEEeeccccccccccccccccccccccccccccCHHHHHHHHHHHHHHH
Confidence 999999 789999999999999999999988761 256999999999999
Q ss_pred HHhhHHHHHHHHh
Q psy11425 658 KKKGAIEIIKSYE 670 (672)
Q Consensus 658 ~~~g~~~~l~~~~ 670 (672)
+++||++||.+++
T Consensus 346 l~~Ga~~il~~~~ 358 (364)
T 3ecr_A 346 LSKGAKNILDVAR 358 (364)
T ss_dssp HHTTHHHHHHHSC
T ss_pred HHHhHHHHHHHHH
Confidence 9999999998765
No 3
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=100.00 E-value=8.4e-40 Score=321.68 Aligned_cols=181 Identities=40% Similarity=0.684 Sum_probs=170.5
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCC-CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTS 206 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~ 206 (672)
++|+|+||||||||||++.|.+.+| .|.++++||||+||++|.+|.+|||+|+++|.+++.+|.|+||++++|++|||+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~ 81 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeee
Confidence 5799999999999999999999887 589999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCeEEEEeeHHHHHHHHHhCC-CcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhc--CC
Q psy11425 207 FFPIVREIKSNVDILLEIDFQGAKQIKKKFP-NAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYA--NK 283 (672)
Q Consensus 207 ~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~-~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~--~~ 283 (672)
++.+...+++|++||++++++|+.++++.++ ++++|||.|||.+++++||..||.++++.+++||..+..++.+. ..
T Consensus 82 ~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~a~~e~~~~~~~~ 161 (186)
T 1ex7_A 82 VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGA 161 (186)
T ss_dssp HHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccC
Confidence 9999999999999999999999999988654 78999999999999999999999999999999999988887654 47
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHhcc
Q psy11425 284 FDYIIINNKFSKALLQLKAIINANR 308 (672)
Q Consensus 284 ~D~VI~Nddle~a~~qL~~iI~~~~ 308 (672)
||+||+|+|+++++++|.++|.+++
T Consensus 162 fD~vIvNddle~a~~~l~~iI~aer 186 (186)
T 1ex7_A 162 HDKVIVNDDLDKAYKELKDFIFAEK 186 (186)
T ss_dssp SSEEEECSSHHHHHHHHHHHHTTCC
T ss_pred CcEEEECcCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999997653
No 4
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=100.00 E-value=2.1e-33 Score=294.33 Aligned_cols=198 Identities=20% Similarity=0.304 Sum_probs=178.7
Q ss_pred hhhhhccccccceEEEEeCCCCCChHHHHHHHHhcCC-CceeecccccccCCCCCCCCcccccC-CHHHHHHHHHcCCch
Q psy11425 116 HELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEKNGREYYFT-NIDNFKKLQKSGKFL 193 (672)
Q Consensus 116 ~E~~~r~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TTR~~r~~E~~G~dY~fv-s~~~F~~~i~~g~fl 193 (672)
||.+.+..+..+++|||+||+ |+||.+.|.+.+| .|.++++||||+||++|.+|.+|||+ ++++|.+++.+|.|+
T Consensus 89 YE~V~~~~~~~~RpvVl~Gp~---K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~fl 165 (292)
T 3tvt_A 89 YEAVQRLSINYTRPVIILGPL---KDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFI 165 (292)
T ss_dssp EEEEEEEECSSCCCEEEESTT---HHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEE
T ss_pred hheEEeccCCCCCeEEEeCCC---HHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceE
Confidence 788888888888999999994 9999999999987 58999999999999999999999998 899999999999999
Q ss_pred hHHhHhccccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy11425 194 EWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILS 273 (672)
Q Consensus 194 e~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~ 273 (672)
||++++|++|||+.+.|..++++|++||+|++++|+..++...+++++|||.|||.+++++|+..|+.++.+.+..|+.
T Consensus 166 E~a~~~gn~YGT~~~~V~~~~~~gk~viLdid~qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~e~~~~~~~r~~- 244 (292)
T 3tvt_A 166 EAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAI- 244 (292)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHHTCEEEECCCTHHHHHHHHTTCCCEEEEECCSCHHHHHHTCTTSCTTHHHHHHHHHH-
T ss_pred EEEEEccceeEEehHHHHHHHHcCCcEEEeccchhhhhcccccccceEEEEECCCHHHHHHHHhCCCchhHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999998887765555555543
Q ss_pred HHHHhhhcCCCcEEEEcCCHHHHHHHHHHHHHhcccccccccchh
Q psy11425 274 ANKEISYANKFDYIIINNKFSKALLQLKAIINANRCFMARVTIED 318 (672)
Q Consensus 274 ~~~e~~~~~~~D~VI~Nddle~a~~qL~~iI~~~~~~m~r~~~~~ 318 (672)
..+..+.+.||+||+|||+++++.+|.++|.++.....|+|-.+
T Consensus 245 -k~e~e~~~~fD~vIvNddle~a~~~l~~iI~~e~~~~~WVP~~~ 288 (292)
T 3tvt_A 245 -KMEQEFGEYFTGVVQGDTIEEIYSKVKSMIWSQSGPTIWVPSKE 288 (292)
T ss_dssp -HHHHHHTTTCSEEECCSSHHHHHHHHHHHHHHHTCSEEEEEC--
T ss_pred -HHHHhhhhhCCEEEECcCHHHHHHHHHHHHHHhhCCCeEecCcc
Confidence 44667788999999999999999999999999888877766543
No 5
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=99.98 E-value=1.4e-32 Score=289.03 Aligned_cols=198 Identities=23% Similarity=0.332 Sum_probs=180.6
Q ss_pred hhhhhhccccccceEEEEeCCCCCChHHHHHHHHhcCC-CceeecccccccCCCCCCCCcccccC-CHHHHHHHHHcCCc
Q psy11425 115 RHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEKNGREYYFT-NIDNFKKLQKSGKF 192 (672)
Q Consensus 115 ~~E~~~r~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TTR~~r~~E~~G~dY~fv-s~~~F~~~i~~g~f 192 (672)
.||.+.++.++++++|+|+|| ||+||++.|.+.+| .|.++++||||+||+||.+|.+|||+ |+++|.+++.+|.|
T Consensus 93 ~Ye~V~~~~~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~f 169 (295)
T 1kjw_A 93 SYETVTQMEVHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKF 169 (295)
T ss_dssp CEEEEEEEECCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCE
T ss_pred CcceeeeecCCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCc
Confidence 377777777778899999998 79999999999887 69999999999999999999999999 99999999999999
Q ss_pred hhHHhHhccccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHH
Q psy11425 193 LEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRIL 272 (672)
Q Consensus 193 le~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~ 272 (672)
+||++++|++|||+++.|..++++|++||++++++++..++.....|++|||.|||.+++++ |..|+ +++++++|+.
T Consensus 170 lE~~~~~g~~YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~~~pi~IfI~pps~~~L~~-L~~R~--t~~~i~~rl~ 246 (295)
T 1kjw_A 170 IEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE-INKRI--TEEQARKAFD 246 (295)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHH-HCTTS--CHHHHHHHHH
T ss_pred EEEEEEcCcEeeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcccCCeEEEEECCCHHHHHH-HHhcC--CHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877788999999999999988 87776 4577899998
Q ss_pred HH-HHHhhhcCCCcEEEEcCCHHHHHHHHHHHHHhcccccccccchh
Q psy11425 273 SA-NKEISYANKFDYIIINNKFSKALLQLKAIINANRCFMARVTIED 318 (672)
Q Consensus 273 ~~-~~e~~~~~~~D~VI~Nddle~a~~qL~~iI~~~~~~m~r~~~~~ 318 (672)
++ ..++.+.+.||++|+|+|+++++.+|.++|...+....|+|+.+
T Consensus 247 ~a~~~e~~~~~~fd~vivNd~le~a~~~l~~ii~~~~~~~~Wvp~~~ 293 (295)
T 1kjw_A 247 RATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARE 293 (295)
T ss_dssp HHHHHHHHHGGGCSEEECCSSHHHHHHHHHHHHHHHSCSEEEEECSC
T ss_pred HHHHHHHhccccCeEEEECcCHHHHHHHHHHHHHhccCCCEEeeCCC
Confidence 88 45778888999999999999999999999998888888877654
No 6
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.97 E-value=5.2e-32 Score=268.27 Aligned_cols=183 Identities=23% Similarity=0.387 Sum_probs=157.5
Q ss_pred ccccccceEEEEeCCCCCChHHHHHHHHhcCC-CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHh
Q psy11425 121 KSFKSFGNIFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVH 199 (672)
Q Consensus 121 r~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~ 199 (672)
+..++.+++|+|+||||||||||++.|.+.++ .+.+++++|||+|+++|.+|.+|+|++.++|.+++.++.|++|++++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~ 92 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQ 92 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhh
Confidence 34556789999999999999999999999887 58899999999999999999999999999999999999999999999
Q ss_pred ccccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Q psy11425 200 GNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEIS 279 (672)
Q Consensus 200 g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~ 279 (672)
+++||++...+..+++.|++||++++++++++++..++++++|||.|||.+ |+.++.+.+.+|+.. .+..
T Consensus 93 ~n~YGt~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~Pps~~--------~~~e~~~~i~~r~~~--~~~~ 162 (197)
T 3ney_A 93 GNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQG--------TQTEALQQLQKDSEA--IRSQ 162 (197)
T ss_dssp TEEEEEEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEEECCBS--------SCCHHHHHHHHHHHH--HHHH
T ss_pred ceecccchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEeCCCcc--------ccchHHHHHHHHHHH--HHHh
Confidence 999999999999999999999999999999999988889999999999863 343333445555532 2334
Q ss_pred hcCCCcEEEEcCCHHHHHHHHHHHHHhccccccc
Q psy11425 280 YANKFDYIIINNKFSKALLQLKAIINANRCFMAR 313 (672)
Q Consensus 280 ~~~~~D~VI~Nddle~a~~qL~~iI~~~~~~m~r 313 (672)
+.+.|||||+|||+++++++|.++|.+......|
T Consensus 163 ~~~~fd~vivNd~l~~a~~~l~~ii~~~~~~pqW 196 (197)
T 3ney_A 163 YAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQW 196 (197)
T ss_dssp HGGGCSEEEEESCHHHHHHHHHHHHHHCCCCCC-
T ss_pred hccCCCEEEECCCHHHHHHHHHHHHHHccCCCCC
Confidence 6779999999999999999999999876544433
No 7
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.97 E-value=6.3e-31 Score=262.33 Aligned_cols=189 Identities=38% Similarity=0.671 Sum_probs=172.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCC-ceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhcccc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHK-IKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFY 203 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~-~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~Y 203 (672)
.++++|+|+|||||||||+++.|.+.++. +...+++|||+++++|.+|.+|+|++...|..++..+.|++|+++++++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~y 85 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYY 85 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccC
Confidence 45789999999999999999999998864 99999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcCC
Q psy11425 204 GTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANK 283 (672)
Q Consensus 204 Gt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~~~ 283 (672)
|++...+...++.|+.||+++++++...++..++++++||+.|||.+++.+||..|+.++++.+.+|+.++..+..+.+.
T Consensus 86 g~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~~~~~~ 165 (208)
T 3tau_A 86 GTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMMAS 165 (208)
T ss_dssp EEEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTTTTSSCC-------CCHHHHHHHHHHHHHHHHGGG
T ss_pred CCcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999888888899
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHhccccccc
Q psy11425 284 FDYIIINNKFSKALLQLKAIINANRCFMAR 313 (672)
Q Consensus 284 ~D~VI~Nddle~a~~qL~~iI~~~~~~m~r 313 (672)
||++|+|+++++++.+|.++|...+++..|
T Consensus 166 ~d~vivN~~~~~~~~~l~~~i~~~~~~~~~ 195 (208)
T 3tau_A 166 YDYAVVNDVVANAVQKIKGIVETEHLKTER 195 (208)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHHHHTBHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999988777655
No 8
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.96 E-value=5.4e-30 Score=250.88 Aligned_cols=181 Identities=40% Similarity=0.679 Sum_probs=140.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCC-CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGT 205 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt 205 (672)
+++|+|+|||||||||+++.|....+ .+++++++|||++++++.+|.+|+|.+++.|..++..+.|++|.++.++.||+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~ 80 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS 80 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccC
Confidence 46899999999999999999998875 68889999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhcCCeEEEEeeHHHHHHHHH-hCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhc--C
Q psy11425 206 SFFPIVREIKSNVDILLEIDFQGAKQIKK-KFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYA--N 282 (672)
Q Consensus 206 ~~~~I~~~l~~G~~vIldi~~~g~~~l~~-~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~--~ 282 (672)
+...+...++.|++|++++++++...++. ..+++++|||.||+.+++.+||..|+.++++.+++|+.++..++.+. +
T Consensus 81 ~~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~~~~~~~~ 160 (186)
T 3a00_A 81 TVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETG 160 (186)
T ss_dssp EHHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC---------------------------------CC
T ss_pred cHHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999998 78889999999999999999999999999899999999998887776 8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHHhc
Q psy11425 283 KFDYIIINNKFSKALLQLKAIINAN 307 (672)
Q Consensus 283 ~~D~VI~Nddle~a~~qL~~iI~~~ 307 (672)
.||++|+|+++++++.+|.++|..+
T Consensus 161 ~~d~vi~nd~~~~a~~~l~~~i~~~ 185 (186)
T 3a00_A 161 AHDKVIVNDDLDKAYKELKDFIFAE 185 (186)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHTTC
T ss_pred CCcEEEECcCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999754
No 9
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.96 E-value=1.1e-28 Score=244.87 Aligned_cols=186 Identities=32% Similarity=0.533 Sum_probs=169.0
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhcCCC-ceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhcc
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKKDHK-IKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGN 201 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~-~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~ 201 (672)
..-.+++|+|+|||||||||+++.|.+.++. +.++++||||+++.++.+|.+|+|+++++|..++.++.|++++++.++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANN 87 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCC
Confidence 3346789999999999999999999998876 889999999999999999999999999999999999999999999999
Q ss_pred ccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCC--CcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Q psy11425 202 FYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFP--NAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEIS 279 (672)
Q Consensus 202 ~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~--~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~ 279 (672)
.||+..+.+...++.|+.||++++++++..+++.++ ++++|||.|+|++++.+|+..|+.++++.+.+|+..+..++.
T Consensus 88 ~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~ 167 (204)
T 2qor_A 88 FYGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQELTREMD 167 (204)
T ss_dssp EEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHH
T ss_pred eecCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999889999999999999999999999988776 678899997789999999999998888999999988766665
Q ss_pred --hcCCCcEEEEcCCHHHHHHHHHHHHHhcc
Q psy11425 280 --YANKFDYIIINNKFSKALLQLKAIINANR 308 (672)
Q Consensus 280 --~~~~~D~VI~Nddle~a~~qL~~iI~~~~ 308 (672)
+...||++|+|+++++++++|.++|....
T Consensus 168 ~~~~~~~d~vi~n~~~e~~~~~i~~~i~~~~ 198 (204)
T 2qor_A 168 EADKVGFNYFIVNDDLARTYAELREYLLGSY 198 (204)
T ss_dssp HHHHHTCSEEEECSSHHHHHHHHHHHHHHHC
T ss_pred HhhhccCcEEEECcCHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999997643
No 10
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.96 E-value=7.3e-29 Score=290.35 Aligned_cols=197 Identities=23% Similarity=0.341 Sum_probs=181.7
Q ss_pred hhhhhccccccceEEEEeCCCCCChHHHHHHHHhcCC-CceeecccccccCCCCCCCCcccccC-CHHHHHHHHHcCCch
Q psy11425 116 HELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEKNGREYYFT-NIDNFKKLQKSGKFL 193 (672)
Q Consensus 116 ~E~~~r~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TTR~~r~~E~~G~dY~fv-s~~~F~~~i~~g~fl 193 (672)
||.+.++.++++++|+|+||+ |+||++.|.+.+| .|.++++||||++|++|.+|.+|||+ ++++|.+++.+|.|+
T Consensus 520 Ye~V~~~~~~~~r~vvl~GP~---K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~fl 596 (721)
T 2xkx_A 520 YETVTQMEVHYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFI 596 (721)
T ss_pred ceeeecccCCCCCEEEEECCC---HHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCce
Confidence 788887777788999999994 9999999999887 69999999999999999999999999 999999999999999
Q ss_pred hHHhHhccccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy11425 194 EWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILS 273 (672)
Q Consensus 194 e~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~ 273 (672)
||++++|++|||+++.|+.++++|++||++++++++..++....+|++|||.|||.+++++ |..|+. ++++++|+.+
T Consensus 597 E~~~~~g~~YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~~ifi~pps~~~L~~-l~~R~t--~~~~~~rl~~ 673 (721)
T 2xkx_A 597 EAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE-INKRIT--EEQARKAFDR 673 (721)
T ss_pred EEEEECCccceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCEEEEEeCCcHHHHHH-HhccCC--HHHHHHHHHH
Confidence 9999999999999999999999999999999999999998777788999999999999988 888874 4678999988
Q ss_pred H-HHHhhhcCCCcEEEEcCCHHHHHHHHHHHHHhcccccccccchh
Q psy11425 274 A-NKEISYANKFDYIIINNKFSKALLQLKAIINANRCFMARVTIED 318 (672)
Q Consensus 274 ~-~~e~~~~~~~D~VI~Nddle~a~~qL~~iI~~~~~~m~r~~~~~ 318 (672)
+ ..++.+.+.||++|+|+|+++++.+|.++|........|+++.+
T Consensus 674 a~~~e~~~~~~fd~vi~Nd~l~~a~~~l~~~i~~~~~~~~Wvp~~~ 719 (721)
T 2xkx_A 674 ATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARE 719 (721)
T ss_pred HHHHHHhccccCcEEEECcCHHHHHHHHHHHHHhccCCcEEeeccc
Confidence 8 45888999999999999999999999999999988888888754
No 11
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.95 E-value=1.2e-27 Score=241.34 Aligned_cols=192 Identities=48% Similarity=0.776 Sum_probs=175.4
Q ss_pred cccccceEEEEeCCCCCChHHHHHHHHhcCC--CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHh
Q psy11425 122 SFKSFGNIFIISAPSGAGKSTLVNELLKKDH--KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVH 199 (672)
Q Consensus 122 ~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~--~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~ 199 (672)
|..+.+.+++|+||||||||||.+.|....+ .+...+++|||++++++.+|.+|+|.++..|..+...+.|++|..+.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 3445678999999999999999999998876 47789999999999999999999999999999999999999999999
Q ss_pred ccccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Q psy11425 200 GNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEIS 279 (672)
Q Consensus 200 g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~ 279 (672)
+++||++...+...++.|+++++|+++++...+++...+...|||.+++.+.+.+|++.||.++++++.+|+.++..++.
T Consensus 91 ~~~yg~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~~~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~rl~~a~~e~~ 170 (219)
T 1s96_A 91 GNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMS 170 (219)
T ss_dssp TEEEEEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHT
T ss_pred hccCCCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHccCCEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 99999998889999999999999999999999999888788899999999999999999999999999999999988888
Q ss_pred hcCCCcEEEEcCCHHHHHHHHHHHHHhccccccc
Q psy11425 280 YANKFDYIIINNKFSKALLQLKAIINANRCFMAR 313 (672)
Q Consensus 280 ~~~~~D~VI~Nddle~a~~qL~~iI~~~~~~m~r 313 (672)
+...||++|+|+|+++++.+|.++|...+++..|
T Consensus 171 ~~~~~d~~i~Nd~l~~a~~~l~~ii~~~~~~~~~ 204 (219)
T 1s96_A 171 HYAEYDYLIVNDDFDTALTDLKTIIRAERLRMSR 204 (219)
T ss_dssp TGGGSSEEEECSSHHHHHHHHHHHHHHHHTBHHH
T ss_pred hccCCCEEEECcCHHHHHHHHHHHHHHHHhhhHh
Confidence 8889999999999999999999999988776555
No 12
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=99.94 E-value=8.7e-28 Score=234.09 Aligned_cols=174 Identities=22% Similarity=0.440 Sum_probs=152.3
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCC-CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccc
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNF 202 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~ 202 (672)
|.++++++|+||||||||||++.|....+ .+...+++|||+|++++.+|.+|+|++.+.|..++..+.|++|+++.+++
T Consensus 2 ~~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~ 81 (180)
T 1kgd_A 2 SHMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAM 81 (180)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCcc
Confidence 45678999999999999999999998876 57888999999999999999999999999999999999999999999999
Q ss_pred cCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh--hh
Q psy11425 203 YGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEI--SY 280 (672)
Q Consensus 203 YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~--~~ 280 (672)
||++...+...++.|++|+++++++++..++...+++++|||.|||.+++.+| ++.+ +|+..+..++ .+
T Consensus 82 yg~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~~~~~~ifi~~p~~~~l~~R--------~~~i-~r~~~~~~~~~~~~ 152 (180)
T 1kgd_A 82 YGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNE--------DESL-QRLQKESDILQRTY 152 (180)
T ss_dssp EEEEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCTTSCC--------SHHH-HHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHCCCeEEEEECHHHHHHHHHhCCCcEEEEEECCCHHHHHhh--------HHHH-HHHHHHHHHHHHhh
Confidence 99999889999999999999999999999988777889999999988877665 3556 5666665554 56
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHh
Q psy11425 281 ANKFDYIIINNKFSKALLQLKAIINA 306 (672)
Q Consensus 281 ~~~~D~VI~Nddle~a~~qL~~iI~~ 306 (672)
.+.||++|+|+++++++++|.++|..
T Consensus 153 ~~~~d~~i~n~~~~~~~~~l~~~i~~ 178 (180)
T 1kgd_A 153 AHYFDLTIINNEIDETIRHLEEAVEL 178 (180)
T ss_dssp GGGCSEEEECSSHHHHHHHHHHHHHH
T ss_pred hCCCcEEEECcCHHHHHHHHHHHHHH
Confidence 78999999999999999999999864
No 13
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.92 E-value=5.2e-25 Score=216.96 Aligned_cols=188 Identities=46% Similarity=0.772 Sum_probs=173.7
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGT 205 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt 205 (672)
.+.+|+|+||+||||||+++.|....|.+.+...++++.++.++..|..|+|.++..|..+...+.|+++..++++.||+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGT 85 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccc
Confidence 46799999999999999999999888778888899999999999999999999999999999999999998999999999
Q ss_pred chHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcCCCc
Q psy11425 206 SFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFD 285 (672)
Q Consensus 206 ~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~~~~D 285 (672)
....+...++.|+.++++++++++..++..++.+.+||+.+||++++.+|+..|+.++++.+.+|+..+..+..+...+|
T Consensus 86 ~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d 165 (205)
T 3tr0_A 86 EKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEMAHYKEFD 165 (205)
T ss_dssp EHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHHHTTGGGCS
T ss_pred hHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCC
Confidence 99899999999999999999999999999898998999999999999999999998888889999999988888888999
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccccccc
Q psy11425 286 YIIINNKFSKALLQLKAIINANRCFMAR 313 (672)
Q Consensus 286 ~VI~Nddle~a~~qL~~iI~~~~~~m~r 313 (672)
+||+|+++++++++|..+|...++...+
T Consensus 166 ~vi~n~~~~~~~~~l~~~i~~~~~~~~~ 193 (205)
T 3tr0_A 166 YLVVNDNFDQAVQNLIHIISAERLQRDV 193 (205)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999876665444
No 14
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.92 E-value=6.3e-25 Score=217.46 Aligned_cols=183 Identities=36% Similarity=0.580 Sum_probs=165.3
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCC-CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYG 204 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YG 204 (672)
++++++|+||||||||||++.|...++ .+++.+++|||+++.++.+|.+|+|.+.+.|..++.++.|++++++.++.||
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g 82 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYG 82 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCC
Confidence 467899999999999999999988765 6788999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhc---
Q psy11425 205 TSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYA--- 281 (672)
Q Consensus 205 t~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~--- 281 (672)
++.+.+...++.+..++++++++++..++.....+.++|+.+|+..++.+|+..|+.++++.+.+++.....++.+.
T Consensus 83 ~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~a~~~ 162 (198)
T 1lvg_A 83 TSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEP 162 (198)
T ss_dssp EEHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGGST
T ss_pred CCHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 99989999999999999999999998877656678889999999999999999999999999999998887777655
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHhcc
Q psy11425 282 NKFDYIIINNKFSKALLQLKAIINANR 308 (672)
Q Consensus 282 ~~~D~VI~Nddle~a~~qL~~iI~~~~ 308 (672)
..||+||+|+++++++++|.++|....
T Consensus 163 ~~~D~iivnd~le~a~~~l~~ii~~~~ 189 (198)
T 1lvg_A 163 GLFDLVIINDDLDKAYATLKQALSEEI 189 (198)
T ss_dssp TTCSEEEECSSHHHHHHHHHHHTHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHHh
Confidence 789999999999999999999997753
No 15
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=99.92 E-value=5e-25 Score=207.87 Aligned_cols=123 Identities=39% Similarity=0.686 Sum_probs=111.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy11425 1 MSEKDYMNEEQLAFFKFRLKKLENDLLKNIVKTTEYLRE-TILVPDPADRATIEEENTLELRARDRERKLLIKIQQSIIN 79 (672)
Q Consensus 1 ~~~~~~mt~~ql~~~r~~L~~~~~el~~~l~~~~~~~~~-~~~~~d~~D~a~~~~~~~~~~~~~~~~~~~l~~i~~Al~r 79 (672)
+++++||+++|+++||++|++++++|..++......+.+ ....+|+.|+|+...+..+.+++.++++.+|.+|++||.|
T Consensus 26 ~~~e~~M~~~ql~~fr~~L~~~k~eL~~~l~~~~~~~~~~~~~~~D~~D~As~~~e~~l~~~~~~re~~~L~~i~~Al~r 105 (151)
T 1tjl_A 26 KPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKK 105 (151)
T ss_dssp CTTCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999887766554 3356799999999988888988999999999999999999
Q ss_pred cccCCCCCcCccCCcchhhhhhhCCCccchhHHhhhhhhhhccc
Q psy11425 80 IDKKEYGWCKDTGEPIGILRLLAKPMATLSLEAQQRHELKKKSF 123 (672)
Q Consensus 80 i~~gtyG~C~~Cge~Ip~~RL~a~P~a~~C~~c~~~~E~~~r~~ 123 (672)
|+.|+||+|++||+|||.+||+|+|++++|++||+..|...+++
T Consensus 106 i~~g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~E~~~k~~ 149 (151)
T 1tjl_A 106 VEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQM 149 (151)
T ss_dssp HHTTCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHHHHHHHHH
T ss_pred HhCCCCceeCCCCCcchHHHHhcCCCcchhHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999877654
No 16
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.92 E-value=4e-25 Score=223.30 Aligned_cols=198 Identities=38% Similarity=0.661 Sum_probs=157.3
Q ss_pred cccceEEEEeCCCCCChHHHHHHHH-hcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccc
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELL-KKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNF 202 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~-e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~ 202 (672)
..++.+|+|+||+||||||+++.|. ...+.+...++++||+++.++.+|.+|+|.++..|..+...+.|+++..+.++.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNF 103 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCceehhhhhcccc
Confidence 3457899999999999999999999 887778889999999999999999999999999999999999999998899999
Q ss_pred cCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhC-CCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhc
Q psy11425 203 YGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKF-PNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYA 281 (672)
Q Consensus 203 YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~-~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~ 281 (672)
||++...+...++.|+.+++++++.+...++..+ +....||+.+|+.+++.+|+..|+..+.+.+.+|+.++..+..+.
T Consensus 104 ~~~~~~~i~~~~~~~~~vild~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~ 183 (231)
T 3lnc_A 104 YGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHC 183 (231)
T ss_dssp EEEECTTHHHHHHHTCEEEEECCHHHHHHHHHHSGGGEEEEEEECSCHHHHHHC--------------CHHHHHHHHTTG
T ss_pred CCCCHHHHHHHHHcCCeEEEEcCHHHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhh
Confidence 9999888999999999999999999999888877 667789999999999999999998888899999999998888888
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHHhccccccc-ccchhhhh
Q psy11425 282 NKFDYIIINNKFSKALLQLKAIINANRCFMAR-VTIEDGLK 321 (672)
Q Consensus 282 ~~~D~VI~Nddle~a~~qL~~iI~~~~~~m~r-~~~~~~~~ 321 (672)
..+|+||+|++++++++++..+|...+.+..+ ++.+++..
T Consensus 184 ~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 224 (231)
T 3lnc_A 184 EAYDYVIVNEDIEETADRISNILRAEQMKTCRQVGLRELLE 224 (231)
T ss_dssp GGSSEEEECSSHHHHHHHHHHHHHHHHTBGGGEESHHHHHH
T ss_pred cCCeEEEECcCHHHHHHHHHHHHHHHhhccccCcchhhHhh
Confidence 89999999999999999999999887655433 55555443
No 17
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.88 E-value=7.3e-23 Score=223.04 Aligned_cols=168 Identities=14% Similarity=0.089 Sum_probs=142.4
Q ss_pred hhhhhhccccccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchh
Q psy11425 115 RHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLE 194 (672)
Q Consensus 115 ~~E~~~r~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle 194 (672)
.||.+.+..+..+++|||+|||| +||+++|.+.+|....+ |||+||++|.+|.+|||+
T Consensus 220 ~YE~V~~~~~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~---~tr~pR~gE~dG~~Y~Fv---------------- 277 (391)
T 3tsz_A 220 AYERVVLREAGFLRPVTIFGPIA---DVAREKLAREEPDIYQI---AKSEPRDAGTDQRSSGII---------------- 277 (391)
T ss_dssp SEEEEEEEECSSCCCEEEESTTH---HHHHHHHHHHCTTTEEE---CCCCCCCSSSCCC--CCC----------------
T ss_pred CcceEECcCCCCCCEEEEECCCH---HHHHHHHHhhCcccccc---ccCCCCCcccCCccCCcC----------------
Confidence 48888887788899999999998 89999999988864332 789999999999999998
Q ss_pred HHhHhccccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy11425 195 WAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSA 274 (672)
Q Consensus 195 ~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~ 274 (672)
++++|+.++++|++||+|++++|++.++...++|++|||.|||.++|++|......++++.++++++.+
T Consensus 278 -----------~~~~V~~~~~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~~~L~~~~~r~~~~s~e~~~~~~~~a 346 (391)
T 3tsz_A 278 -----------RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERS 346 (391)
T ss_dssp -----------CHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECCCHHHHHHHHHHHCSSCCCCHHHHHHHH
T ss_pred -----------cHHHHHHHHHcCCEEEEEeCHHHHHHHHhCCCCCEEEEEeCcCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 467888999999999999999999999999999999999999999999873333345666778888777
Q ss_pred -HHHhhhcCCCcEEEEcCCHH-HHHHHHHHHHHhccccccccc
Q psy11425 275 -NKEISYANKFDYIIINNKFS-KALLQLKAIINANRCFMARVT 315 (672)
Q Consensus 275 -~~e~~~~~~~D~VI~Nddle-~a~~qL~~iI~~~~~~m~r~~ 315 (672)
..+..|.+.|||||+|||++ .++.+|.++|........|+|
T Consensus 347 ~~~e~~~~~~fd~vivNd~l~~~a~~~l~~ii~~~~~~~~Wvp 389 (391)
T 3tsz_A 347 HKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVS 389 (391)
T ss_dssp HHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHHHHHSEEEEE
T ss_pred HHHHHhccccCcEEEECCCcHHHHHHHHHHHHHHhcCCCeecc
Confidence 56678999999999999998 799999999988776666654
No 18
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.88 E-value=4.7e-23 Score=227.89 Aligned_cols=173 Identities=14% Similarity=0.071 Sum_probs=137.7
Q ss_pred hhhhhhccccccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchh
Q psy11425 115 RHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLE 194 (672)
Q Consensus 115 ~~E~~~r~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle 194 (672)
.||.+.+..+..+++|||+||||+| |+++|.+.+|..... .||| ||++|.+|.+|||
T Consensus 212 ~YEeV~~~~~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s--~~TR-pR~gE~dG~~Y~F----------------- 268 (468)
T 3shw_A 212 AYERVVLREAGFLRPVTIFGPIADV---AREKLAREEPDIYQI--AKSE-PRDAGTDQRSSGI----------------- 268 (468)
T ss_dssp SEEEEEEECCSSCCCEEEESTTHHH---HHHHHHHHCTTTEEE--CCCB-C----------CB-----------------
T ss_pred CcceeEcccCCCCCEEEEECCCHHH---HHHHHHHhCCCceee--ecCC-CCCcccccccCCc-----------------
Confidence 4888888888889999999999999 999999988754333 4689 8999999999999
Q ss_pred HHhHhccccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy11425 195 WAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSA 274 (672)
Q Consensus 195 ~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~ 274 (672)
|++..|+.++++|++||+|++++|++.++...++|++|||.|||.++|+++......++++.++++++.+
T Consensus 269 ----------Ts~~~V~~vl~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl~~~see~~~r~~~~a 338 (468)
T 3shw_A 269 ----------IRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERS 338 (468)
T ss_dssp ----------CCHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECSCHHHHHHHHHHHCTTCCCCHHHHHHHH
T ss_pred ----------ccHHHHHHHHHCCCeEEEEeCHHHHHHHHhcCCCCEEEEEeCcCHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 6788999999999999999999999999998999999999999999998754444455666788888776
Q ss_pred -HHHhhhcCCCcEEEEcCCH-HHHHHHHHHHHHhcccccccccchhhh
Q psy11425 275 -NKEISYANKFDYIIINNKF-SKALLQLKAIINANRCFMARVTIEDGL 320 (672)
Q Consensus 275 -~~e~~~~~~~D~VI~Nddl-e~a~~qL~~iI~~~~~~m~r~~~~~~~ 320 (672)
..+..|.++|||||+|+|+ ++++.+|.++|...+....|+|+..+-
T Consensus 339 ~~~e~~~~~~fD~vIvNddl~d~a~~~L~~ii~~~~~~~~WvP~~~~~ 386 (468)
T 3shw_A 339 HKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSEGKAD 386 (468)
T ss_dssp HHHHHHHGGGCSEEEECBTTBCHHHHHHHHHHHHHHTSCEEEEC----
T ss_pred HHHHHhhhccCCEEEECCCcHHHHHHHHHHHHHHhcCCCEEeCCcccc
Confidence 4567899999999999999 599999999999998888888876543
No 19
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.88 E-value=1.7e-22 Score=198.99 Aligned_cols=189 Identities=39% Similarity=0.684 Sum_probs=140.6
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC-CCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhcccc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD-HKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFY 203 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~-~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~Y 203 (672)
+.+.+|+|+|||||||||+++.|...+ |..+..+.+++|.++.++.+|..|.|.++..|..+...+.++++..+.++.|
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYY 83 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeec
Confidence 357799999999999999999999987 5455567888999888888899999999999999999999999988888899
Q ss_pred CcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcCC
Q psy11425 204 GTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANK 283 (672)
Q Consensus 204 Gt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~~~ 283 (672)
|.....+...++.|..+|+++.+.+...++..+++.++||+.+|+.+++.+|+..|+..+++.+.+|+..+..+..+...
T Consensus 84 g~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~~~~~~ 163 (207)
T 2j41_A 84 GTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARKEVEMMNL 163 (207)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC---------------------------CGGGGGGG
T ss_pred CCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcccc
Confidence 99988888888889999999998888888877778888999888899999999999877778888888887766667778
Q ss_pred CcEEEEcCCHHHHHHHHHHHHHhccccccc
Q psy11425 284 FDYIIINNKFSKALLQLKAIINANRCFMAR 313 (672)
Q Consensus 284 ~D~VI~Nddle~a~~qL~~iI~~~~~~m~r 313 (672)
+|++|+|+++++++.+|.+++...++...|
T Consensus 164 ~d~vI~n~~~e~~~~~i~~~l~~~~~~~~~ 193 (207)
T 2j41_A 164 YDYVVVNDEVELAKNRIQCIVEAEHLKRER 193 (207)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHHTBHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHHHhhcchhh
Confidence 999999999999999999999887655433
No 20
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.84 E-value=5.7e-20 Score=184.58 Aligned_cols=189 Identities=34% Similarity=0.482 Sum_probs=163.9
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC-CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhcccc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFY 203 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~Y 203 (672)
..+.+++|+||||||||||++.|....| .+.+.+++++++++.++.+|.+|.|.++..|..+...+.|+++.++.++.|
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 100 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFY 100 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcccccC
Confidence 4578999999999999999999988776 455567888998888889999999999999999988899999988888899
Q ss_pred CcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhC--CCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhc
Q psy11425 204 GTSFFPIVREIKSNVDILLEIDFQGAKQIKKKF--PNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYA 281 (672)
Q Consensus 204 Gt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~--~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~ 281 (672)
|++...+..+++.+..++++.++.|.+..+... .++..+|+.+|+..++.+|+..++..+++.+.+++.....+..+.
T Consensus 101 g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~ 180 (218)
T 1z6g_A 101 GTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEA 180 (218)
T ss_dssp EEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Confidence 998888889999999999999999998887766 566789999999999999999999999999999998876655444
Q ss_pred --CCCcEEEEcCCHHHHHHHHHHHHHhccccccc
Q psy11425 282 --NKFDYIIINNKFSKALLQLKAIINANRCFMAR 313 (672)
Q Consensus 282 --~~~D~VI~Nddle~a~~qL~~iI~~~~~~m~r 313 (672)
..||+||+|+++++++..+..+|....++.++
T Consensus 181 h~~~~d~iiv~~~~~ea~~~~~~ii~~~~~~~~~ 214 (218)
T 1z6g_A 181 NLLNFNLSIINDDLTLTYQQLKNYLLNSYIHLNN 214 (218)
T ss_dssp TTSCCSEEEECSSHHHHHHHHHHHHHHHTTCC--
T ss_pred cccCCCEEEECCCHHHHHHHHHHHHHHHHHhhhc
Confidence 68999999999999999999999887666444
No 21
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics, PSI-2, protein ST initiative; NMR {Agrobacterium tumefaciens str}
Probab=99.83 E-value=9.6e-23 Score=183.56 Aligned_cols=106 Identities=20% Similarity=0.267 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCc
Q psy11425 9 EEQLAFFKFRLKKLENDLLKNIVKTTEYLRETILVPDPADRATIEEENTLELRARDRERKLLIKIQQSIINIDKKEYGWC 88 (672)
Q Consensus 9 ~~ql~~~r~~L~~~~~el~~~l~~~~~~~~~~~~~~d~~D~a~~~~~~~~~~~~~~~~~~~l~~i~~Al~ri~~gtyG~C 88 (672)
+.|+++||++|++++++|..++......+.. ...+|..|.|+...+..+..++.++.+.+|.+|++||.||+.|+||+|
T Consensus 6 ~~~l~~fr~~L~~~~~eL~~~l~~~~~~~~~-~~~~D~~D~a~~~~~~~~~~al~~r~r~~L~~i~~Al~ri~~g~yg~C 84 (112)
T 2kq9_A 6 SMNVESYEKILRDRQRELYRRLHKIEADFEE-PRNPDDEDRASERSNDEVLDELGQVGQDELRAIDAALARIASGTFGTC 84 (112)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHTTTTCCCCC-SSSCSSSCCCCTTCCCCCCTTSCHHHHHHHHHHHHHHHHHHHTCCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCee
Confidence 4578999999999999999999887654443 236889999998888887888888999999999999999999999999
Q ss_pred CccCCcchhhhhhhCCCccchhHHhhh
Q psy11425 89 KDTGEPIGILRLLAKPMATLSLEAQQR 115 (672)
Q Consensus 89 ~~Cge~Ip~~RL~a~P~a~~C~~c~~~ 115 (672)
++||+|||.+||+|+|++++|++||+.
T Consensus 85 ~~Cg~~I~~~Rl~a~P~a~~Ci~Cq~~ 111 (112)
T 2kq9_A 85 VKCGKRISEDRLKAVPYTPFCQECAAA 111 (112)
T ss_dssp TTTTEECCHHHHHHCSCCSSCHHHHHH
T ss_pred CCCCCcccHHHHhcCCCcchhHHHHhc
Confidence 999999999999999999999999974
No 22
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=99.80 E-value=8.7e-20 Score=191.40 Aligned_cols=168 Identities=15% Similarity=0.109 Sum_probs=135.4
Q ss_pred hhhhhhccccccceEEEEeCCCCCChHHHHHHHHhcCC-CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCch
Q psy11425 115 RHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFL 193 (672)
Q Consensus 115 ~~E~~~r~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fl 193 (672)
.||.+.+..+..+++|||+|| ||+||.+.|.+.+| .|+++++. +| .+.++.|+
T Consensus 133 ~YE~V~~~~~~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~~-~r----------------------~i~~~~fi 186 (308)
T 3kfv_A 133 PYERVVLREASFKRPVVILGP---VADIAMQKLTAEMPDQFEIAETV-SR----------------------TDSPSKII 186 (308)
T ss_dssp SEEEEEEEECSSCCCEEEEST---THHHHHHHHHHHCTTTEEECCCC-------------------------------CC
T ss_pred CchheeccccCCCCeEEEeCc---cHHHHHHHHHHhCcccccccccc-cc----------------------cccCCCee
Confidence 489999888888999999999 69999999999987 78888762 11 14455565
Q ss_pred hHHhHhccccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy11425 194 EWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILS 273 (672)
Q Consensus 194 e~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~ 273 (672)
++.+|+.++++|++||+|++++|++.++...++|++|||.|||.++|++|...++.++++.++++++.
T Consensus 187 ------------s~~~V~~vl~~Gk~~ILDId~QGa~~lk~~~~~pi~IFI~PPS~eeL~~rr~R~~~esee~~~r~~~a 254 (308)
T 3kfv_A 187 ------------KLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQWLAPASRRSTRRLYAQ 254 (308)
T ss_dssp ------------CHHHHHHHHHTTCEEEECCCHHHHHHHHHTTCCCEEEEEEESCHHHHHHHHHHHSTTCCCCHHHHHHH
T ss_pred ------------cHHHHHHHHHCCCcEEEEECHHHHHHHHhcCCCCEEEEEeCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 67899999999999999999999999999899999999999999999997433344566666666666
Q ss_pred H-HHHhhhcCCCcEEE-EcCCHHHHHHHHHHHHHhcccccccccchhhh
Q psy11425 274 A-NKEISYANKFDYII-INNKFSKALLQLKAIINANRCFMARVTIEDGL 320 (672)
Q Consensus 274 ~-~~e~~~~~~~D~VI-~Nddle~a~~qL~~iI~~~~~~m~r~~~~~~~ 320 (672)
+ ..+..|.+.||||| +|+|+++++.+|.++|........|+|.+.|-
T Consensus 255 a~eiE~~~~~~FD~vI~VNDdle~A~~~L~~iI~~~~~epqWvp~~~~~ 303 (308)
T 3kfv_A 255 AQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQQTRPIWTAEDQLH 303 (308)
T ss_dssp HHHHHHHHGGGCSEEEEECSSSTHHHHHHHHHHHHHTTSEEEEEC----
T ss_pred HHHHHHhhhccCcEEEEcCCCHHHHHHHHHHHHHHhcCCCeEeehhhhh
Confidence 5 45677889999999 99999999999999999998888888887653
No 23
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=99.69 E-value=8.9e-18 Score=176.98 Aligned_cols=169 Identities=18% Similarity=0.161 Sum_probs=121.0
Q ss_pred cceEEEEeCCCCCChHH-------HHHHHHhcCCCceeecccccccCCCCCCCCccc--ccCCHHHHHHHHHcCCchhHH
Q psy11425 126 FGNIFIISAPSGAGKST-------LVNELLKKDHKIKLSISTTTRPMRPGEKNGREY--YFTNIDNFKKLQKSGKFLEWA 196 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKST-------La~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY--~fvs~~~F~~~i~~g~fle~~ 196 (672)
..++|+|+||++.|--+ |...|...+++ .++ .||.++..+..+..+ +++++..|...+..+.++|+
T Consensus 141 ~~RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~---~i~-~tR~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~~~ev- 215 (337)
T 4dey_A 141 SMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEG---RIS-ITRVTADISLAKRSVLNNPSKHAIIERSNTRSSLAEV- 215 (337)
T ss_dssp SSCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTT---SEE-EEEECSCGGGC-------------------CCCHHHH-
T ss_pred CCCceEEECCccccchhHHHHHHHHHHhhHHhcCC---ccc-eEeecchhhhcchhhhhcccchhhhcccccccchHHH-
Confidence 34679999999999875 55666666543 332 346666555555543 56777788888888877774
Q ss_pred hHhccccCcchHHHHHHHhcCCeEEEEeeHH-HHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q psy11425 197 EVHGNFYGTSFFPIVREIKSNVDILLEIDFQ-GAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSAN 275 (672)
Q Consensus 197 ~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~-g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~ 275 (672)
+...+.+..+.++|++||+|++++ |+.++++.++++++|||.|||.++|++||..||.+..+.+..++..+.
T Consensus 216 -------~seVe~i~~v~~~Gk~vILDIDvQnGa~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt~~~~rl~~al~~ae 288 (337)
T 4dey_A 216 -------QSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAAD 288 (337)
T ss_dssp -------HHHHHHHHHHTTTCCEEEEEETTCCSGGGTTTSSCCCEEEEECCSCHHHHHHHHHTTCHHHHTTHHHHHHHHH
T ss_pred -------HhHHHHHHHHHhCCCEEEEEeCcHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 234556666777899999999999 999999999999999999999999999999999865555666666666
Q ss_pred HHhh-hcCCCcEEEEcCCHHHHHHHHHHHHHh
Q psy11425 276 KEIS-YANKFDYIIINNKFSKALLQLKAIINA 306 (672)
Q Consensus 276 ~e~~-~~~~~D~VI~Nddle~a~~qL~~iI~~ 306 (672)
.++. +.+.|||||+|||+++++.+|.++|..
T Consensus 289 ~E~~~~~~~FDyvIVNDdLe~A~~~L~~iI~~ 320 (337)
T 4dey_A 289 KLAQCPPELFDVILDENQLEDACEHLADYLEA 320 (337)
T ss_dssp HHHHSCGGGCSEEECCSSHHHHHHHHHHHHHH
T ss_pred HHHhhCcccCCEEEECCCHHHHHHHHHHHHHH
Confidence 6665 588999999999999999999999976
No 24
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.63 E-value=7.9e-15 Score=145.39 Aligned_cols=183 Identities=37% Similarity=0.660 Sum_probs=152.2
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhc--
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHG-- 200 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g-- 200 (672)
....+.+++|+|||||||||+++.|....+.+.+...+++++++.++..|..|.|.++..|..+...+.|.+|.++.+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~ 95 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGL 95 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCch
Confidence 345678999999999999999999988776666667888888877788899999999999998888888888766666
Q ss_pred cccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhh
Q psy11425 201 NFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISY 280 (672)
Q Consensus 201 ~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~ 280 (672)
..||.+...+...+.++..++++++..++..++..++..+.+++..|+...+.+++..++.+.+.....++.....++..
T Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~ 175 (207)
T 1znw_A 96 HRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAA 175 (207)
T ss_dssp EEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHG
T ss_pred hhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Confidence 67898887888888888888888999999888888888787888888899999999998877677777888777666655
Q ss_pred cCCCcEEEEcCCHHHHHHHHHHHHH
Q psy11425 281 ANKFDYIIINNKFSKALLQLKAIIN 305 (672)
Q Consensus 281 ~~~~D~VI~Nddle~a~~qL~~iI~ 305 (672)
...++++++++|++++......++-
T Consensus 176 ~~g~tvi~vtHdl~~~~~~~d~i~~ 200 (207)
T 1znw_A 176 QGDFDKVVVNRRLESACAELVSLLV 200 (207)
T ss_dssp GGGSSEEEECSSHHHHHHHHHHHHC
T ss_pred hccCcEEEECCCHHHHHHHHHHHHH
Confidence 5568999999999999988888774
No 25
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=99.61 E-value=7.1e-17 Score=142.21 Aligned_cols=58 Identities=24% Similarity=0.368 Sum_probs=51.7
Q ss_pred HHHHH-HHHHHhhccccC-CCCCcCccCCcchhhhhhhCCCccchhHHhhhhhhhhcccc
Q psy11425 67 RKLLI-KIQQSIINIDKK-EYGWCKDTGEPIGILRLLAKPMATLSLEAQQRHELKKKSFK 124 (672)
Q Consensus 67 ~~~l~-~i~~Al~ri~~g-tyG~C~~Cge~Ip~~RL~a~P~a~~C~~c~~~~E~~~r~~~ 124 (672)
...+. +|++||.||+.| +||+|++||+|||++||+|+|++++|++||+..|...+.+.
T Consensus 36 ~~~l~~~I~~Al~ri~~G~syG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E~~~k~~~ 95 (108)
T 2kgo_A 36 NSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYT 95 (108)
T ss_dssp STHHHHHHHHHTSCSCSSSCCSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHhcCCcCceecccCCcccHHHHhcCCCccccHHHHHHHHHHHHhhc
Confidence 33344 899999999999 89999999999999999999999999999999998877543
No 26
>3lu0_E DNA-directed RNA polymerase subunit omega; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_E*
Probab=99.60 E-value=2.5e-16 Score=135.04 Aligned_cols=59 Identities=54% Similarity=0.746 Sum_probs=54.6
Q ss_pred cccccchhhhhhhhcchhHHHHHHHHhhhhhc-CCCcccccccCCCcchhhhhhhcCcCcc
Q psy11425 311 MARVTIEDGLKKINNRFKLTLCAVYRARQLLK-GHTKKIIGCDNDKVTVIALREISHGKIG 370 (672)
Q Consensus 311 m~r~~~~~~~~~~~~~y~l~~~~~~~a~~~~~-~~~~~~~~~~~~k~~~~a~~~~~~~~v~ 370 (672)
|.||+||+++++|+|||+||++|+||||||.+ |+.|+ ..++++|||++||+||++|+|+
T Consensus 1 Mar~tvddlL~kV~nRY~LV~~AAKRARQL~~~G~~pl-v~~~~~Kpv~iALrEIa~GkV~ 60 (91)
T 3lu0_E 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPL-VPEENDKTTVIALREIEEGLIN 60 (91)
T ss_dssp -CCTTHHHHHHHSSSHHHHHHHHHHHHHHHHHTCCCSC-CSSSCCCSSCCSHHHHHSSSCE
T ss_pred CCCCCHHHHHHHcCCHhHHHHHHHHHHHHHHhcCCCCc-cCCCCCChHHHHHHHHHcCCCc
Confidence 89999999999999999999999999999999 77776 4577999999999999999998
No 27
>2a6h_E RNA polymerase omega chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.143.1.1 PDB: 1smy_E* 1zyr_E* 1iw7_E* 2a69_E* 2a6e_E 2a68_E* 2be5_E* 2cw0_E 3dxj_E* 2o5i_E 2o5j_E* 2ppb_E* 3aoh_E* 3aoi_E* 3eql_E* 1ynj_K* 1i6v_E* 1l9u_E 1l9z_E 1hqm_E* ...
Probab=99.58 E-value=7.7e-16 Score=134.52 Aligned_cols=80 Identities=21% Similarity=0.303 Sum_probs=66.1
Q ss_pred cccccchhhhhhhhcchhHHHHHHHHhhhhhcCC--Ccccc---cccCC---------CcchhhhhhhcCcCcc-ccchH
Q psy11425 311 MARVTIEDGLKKINNRFKLTLCAVYRARQLLKGH--TKKII---GCDND---------KVTVIALREISHGKIG-VEIRL 375 (672)
Q Consensus 311 m~r~~~~~~~~~~~~~y~l~~~~~~~a~~~~~~~--~~~~~---~~~~~---------k~~~~a~~~~~~~~v~-r~S~L 375 (672)
|.||++|+|+++|+|||+||++|+||||||.+|+ .+++. .+.+. ||+++|++||++|+|. +.-.+
T Consensus 1 M~~p~iddll~kv~nrY~LV~~aAKRARQI~~g~~k~~lv~~l~~~~~~~l~e~~~~~Kpv~iAL~EI~~Gki~~~~~~~ 80 (99)
T 2a6h_E 1 MAEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHGFKNTVLEPEERPKMQTLEGLFDDPNAETWAMKELLTGRLVFGENLV 80 (99)
T ss_dssp -CCTTHHHHHHHSSSHHHHHHHHHHHHHHHHHTCTTCCSCCSSSCCCCSSSSGGGTSSCSHHHHHHHHTTTCCEEESSSS
T ss_pred CCCCCHHHHHhhcCCHhHHHHHHHHHHHHHHcCCccccchhhhhhcccccccccccCCCHHHHHHHHHHcCCeeecCCcc
Confidence 7899999999999999999999999999999999 88766 36666 9999999999999999 55444
Q ss_pred HHHHHHHHHHHHHhhCCC
Q psy11425 376 AIWQAEYVRKKIIELYPW 393 (672)
Q Consensus 376 Al~Q~~~v~~~l~~~~p~ 393 (672)
+.. .....+...||+
T Consensus 81 ~~~---~~~~~~~~~~~~ 95 (99)
T 2a6h_E 81 PED---RLQKEMERIYPG 95 (99)
T ss_dssp CTT---HHHHHHHHHCCC
T ss_pred cHH---HHHHHHHhhcCC
Confidence 443 345566666775
No 28
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.40 E-value=2.4e-13 Score=142.07 Aligned_cols=172 Identities=13% Similarity=0.130 Sum_probs=114.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC-CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHH-hHhccc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWA-EVHGNF 202 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~-~~~g~~ 202 (672)
.++.+|+|+|||||||||+++.|.+.++ .+.+...+++|.++++ |..+... |.+|. .+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~--------------~~~~~~~--~~~~a~~~~~~~ 94 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPN--------------FDELVKL--YEKDVVKHVTPY 94 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTT--------------HHHHHHH--HGGGCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchh--------------hHHHHHH--ccchhhhhhhHH
Confidence 4578999999999999999999988764 3333333477766543 3333321 44443 445667
Q ss_pred cCcc-hHHHHHHHhcCCeEEEEeeHHHHH---HHHHh---CCCc-EEEEEeCCCHHHH----HHHHHHc-------CCC-
Q psy11425 203 YGTS-FFPIVREIKSNVDILLEIDFQGAK---QIKKK---FPNA-IGIFILPPSLDSL----KERLYKR-------GQD- 262 (672)
Q Consensus 203 YGt~-~~~I~~~l~~G~~vIldi~~~g~~---~l~~~---~~~~-~vIfI~~ps~e~l----~~RL~~R-------g~~- 262 (672)
||+. ...+...+..|..+|+++++.+.. .++.. ...+ .++++.+| ++.. .+|+..| ++.
T Consensus 95 ~~~~~~~~v~~~l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p-~~~~~l~~~~Rl~~R~~~g~l~~R~~ 173 (287)
T 1gvn_B 95 SNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVP-KINSYLGTIERYETMYADDPMTARAT 173 (287)
T ss_dssp HHHHHHHHHHHHHHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCC-HHHHHHHHHHHHHHHHHHCTTTCCCC
T ss_pred HHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECC-HHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 8773 445666778899999998776643 33221 2233 33444444 6666 7887533 222
Q ss_pred ---CHHHHHHHHHHHHHHhhhcCCCcEEEEcCCH--------HHHHHHHHHHHHhccccccc
Q psy11425 263 ---KYDVISRRILSANKEISYANKFDYIIINNKF--------SKALLQLKAIINANRCFMAR 313 (672)
Q Consensus 263 ---~~e~i~~rl~~~~~e~~~~~~~D~VI~Nddl--------e~a~~qL~~iI~~~~~~m~r 313 (672)
..+.+..++.....++.....||++++|++. +.+...+.++|..++++.-+
T Consensus 174 ~~e~~~~i~~rl~~a~~el~~~~~~d~v~v~d~~g~~ly~~~~~~~~~~~~ii~~e~~r~~~ 235 (287)
T 1gvn_B 174 PKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNREGVKLYSSLETPSISPKETLEKELNRKVS 235 (287)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCSCEEEECTTCCEEEETTTCTTSCHHHHHHHHHSCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCEeeccCCCCCcCHHHHHHHHHcCCCC
Confidence 2355677777777788778899999999864 67777899999988876444
No 29
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.34 E-value=2e-12 Score=128.98 Aligned_cols=176 Identities=13% Similarity=0.071 Sum_probs=107.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCC--------CCCCcccc----cCCHHHHHHHHHcCCc-h
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPG--------EKNGREYY----FTNIDNFKKLQKSGKF-L 193 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~--------E~~G~dY~----fvs~~~F~~~i~~g~f-l 193 (672)
..-|+|||++||||||+++.|.+.+..+..+.........++ +..|.++. .+++..+.+.+.++.- .
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~ 88 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAARGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDAR 88 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHTTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHHCCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHH
Confidence 357999999999999999999986533322221111111111 12244433 2566666665533211 1
Q ss_pred hHHhHhccccCcchHHHHHHHhc--CCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHH
Q psy11425 194 EWAEVHGNFYGTSFFPIVREIKS--NVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRI 271 (672)
Q Consensus 194 e~~~~~g~~YGt~~~~I~~~l~~--G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl 271 (672)
.+ .+.-.....+..+...+.. ++.+++++- -.+...........+|+|.+| ++++.+|+++|+..+.+++..|+
T Consensus 89 ~~--L~~i~HP~I~~~~~~~~~~~~~~~vv~d~p-LL~E~~~~~~~~D~vi~V~ap-~e~r~~Rl~~Rdg~s~eea~~ri 164 (210)
T 4i1u_A 89 RR--LEAITHPLIRAETEREARDAQGPYVIFVVP-LLVESRNWKARCDRVLVVDCP-VDTQIARVMQRNGFTREQVEAII 164 (210)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHTCCSSSEEEECT-TCTTCHHHHHHCSEEEEEECC-HHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HH--HHHHhhHHHHHHHHHHHHhcCCCEEEEEEe-cccccCCccccCCeEEEEECC-HHHHHHHHHhcCCCCHHHHHHHH
Confidence 11 1111111122233333332 456777752 111101111123456899987 99999999999878899999999
Q ss_pred HHHHHHhhhcCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 272 LSANKEISYANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 272 ~~~~~e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
.+|.....+...+|+||.|+ +++++..+|..++..
T Consensus 165 ~~Q~~~eek~~~AD~VIdN~~gsle~l~~qV~~l~~~ 201 (210)
T 4i1u_A 165 ARQATREARLAAADDVIVNDAATPDALAVQVDALHQR 201 (210)
T ss_dssp HHSCCHHHHHHTCSEEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHhCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 99876666778999999999 699999999998865
No 30
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.25 E-value=9.6e-11 Score=110.67 Aligned_cols=160 Identities=16% Similarity=0.213 Sum_probs=94.2
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCCCce-eecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccC--
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDHKIK-LSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYG-- 204 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~~~~-~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YG-- 204 (672)
++|+|+|||||||||+++.| +.. ++. +......|..-. ..| ... ..+..+.......+|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~-g~~~i~~~~~~~~~~~--~~~--~~~------------~~~~~~~~~~~~~~~~~ 63 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER-GAKVIVMSDVVRKRYS--IEA--KPG------------ERLMDFAKRLREIYGDG 63 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT-TCEEEEHHHHHHHHHH--HHC-----------------CCHHHHHHHHHHHHCTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC-CCcEEEHhHHHHHHHH--hcC--CCh------------hHHHHHHHHHHhhCCHH
Confidence 48999999999999999999 553 222 222222211100 000 000 111111111111111
Q ss_pred cchHHHHHHH--hcCCeEEEEee--HHHHHHHHHhCCC-cEEEEEeCCCHHHHHHHHHHcCC----CCHHHHHHHHHHH-
Q psy11425 205 TSFFPIVREI--KSNVDILLEID--FQGAKQIKKKFPN-AIGIFILPPSLDSLKERLYKRGQ----DKYDVISRRILSA- 274 (672)
Q Consensus 205 t~~~~I~~~l--~~G~~vIldi~--~~g~~~l~~~~~~-~~vIfI~~ps~e~l~~RL~~Rg~----~~~e~i~~rl~~~- 274 (672)
.....+...+ ..+..+|+++. +.....++..... ..+||+.+| ++++.+|+..|+. .+.+.+.+++...
T Consensus 64 ~~~~~~~~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~ 142 (179)
T 3lw7_A 64 VVARLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSP-PKIRYKRMIERLRSDDSKEISELIRRDREEL 142 (179)
T ss_dssp HHHHHHHHHHCSCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECC-HHHHHHHHHTCC----CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECC-HHHHHHHHHhccCCCCcchHHHHHHHHHhhh
Confidence 1122334445 56778888863 3333445554433 457888876 9999999999986 5667777776442
Q ss_pred -HHHhhhcCCCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 275 -NKEISYANKFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 275 -~~e~~~~~~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
.....+...+|++|.|+ +++++.++|.+++..
T Consensus 143 ~~~~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~ 176 (179)
T 3lw7_A 143 KLGIGEVIAMADYIITNDSNYEEFKRRCEEVTDR 176 (179)
T ss_dssp HHTHHHHHHTCSEEEECCSCHHHHHHHHHHHHHH
T ss_pred ccChHhHHHhCCEEEECCCCHHHHHHHHHHHHHH
Confidence 22335667899999999 799999999998864
No 31
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.23 E-value=6.8e-11 Score=120.27 Aligned_cols=164 Identities=20% Similarity=0.179 Sum_probs=108.3
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGT 205 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt 205 (672)
++.+|+|+|||||||||+++.|.+.+...++...++.|..... |.. .-..|...+..|.++.+.....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~---~~~----~g~~i~~~~~~g~~~~~~~~~~----- 95 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEK---KTE----LGLKIKNIINEGKLVDDQMVLS----- 95 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTS---SSH----HHHHHHHHHHTTCCCCHHHHHH-----
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhc---cch----HHHHHHHHHhcCCCCcHHHHHH-----
Confidence 4678999999999999999999987655566666777663221 111 2246677777888877643322
Q ss_pred chHHHHHHHh---cCCeEEEEeeHHHHHHHHH-------hCC-CcEEEEEeCCCHHHHHHHHHHcC--------------
Q psy11425 206 SFFPIVREIK---SNVDILLEIDFQGAKQIKK-------KFP-NAIGIFILPPSLDSLKERLYKRG-------------- 260 (672)
Q Consensus 206 ~~~~I~~~l~---~G~~vIldi~~~g~~~l~~-------~~~-~~~vIfI~~ps~e~l~~RL~~Rg-------------- 260 (672)
.+...+. .+..+++|+.+..+.+... ... -..+|++.+| ++++.+|+..|+
T Consensus 96 ---~~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p-~e~~~~Rl~~R~~~~~~g~~y~~~~~ 171 (243)
T 3tlx_A 96 ---LVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVP-DEVLVNRISGRLIHKPSGRIYHKIFN 171 (243)
T ss_dssp ---HHHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTEEEETTTTEEEETTTB
T ss_pred ---HHHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCC-HHHHHHHHHcCCCCcccCcccccccC
Confidence 2222332 3677899987665544332 112 2356777776 899999999875
Q ss_pred -------------------CCCHHHHHHHHHHHHHHh----hhcC-CCcEEEEc-C-CHHHHHHHHHHHHH
Q psy11425 261 -------------------QDKYDVISRRILSANKEI----SYAN-KFDYIIIN-N-KFSKALLQLKAIIN 305 (672)
Q Consensus 261 -------------------~~~~e~i~~rl~~~~~e~----~~~~-~~D~VI~N-d-dle~a~~qL~~iI~ 305 (672)
+++++.+++|+..+..+. .|.. .--++.+| + ++++++.+|.++|.
T Consensus 172 pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 172 PPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred CCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 357789999999876553 2222 22244444 4 69999999998875
No 32
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.21 E-value=8.9e-11 Score=113.25 Aligned_cols=165 Identities=21% Similarity=0.291 Sum_probs=95.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceeeccccccc-CCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhcccc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRP-MRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFY 203 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~-~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~Y 203 (672)
.|+++|+|+|++||||||+++.|.+.+...++......|. +..+.. ....+...+..|.+......
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~--------~~~~i~~~~~~g~~~~~~~~----- 70 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSK--------DGEMIATMIKNGEIVPSIVT----- 70 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCT--------THHHHHHHHHTTCCCCHHHH-----
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCH--------HHHHHHHHHHCCCCCCHHHH-----
Confidence 4668999999999999999999988643222222222222 112211 12334444444443322111
Q ss_pred CcchHHHHHHHh--cCCeEEEEeeHHHH---HHHHHh-C---CCcEEEEEeCCCHHHHHHHHHHcCC------CCHHHHH
Q psy11425 204 GTSFFPIVREIK--SNVDILLEIDFQGA---KQIKKK-F---PNAIGIFILPPSLDSLKERLYKRGQ------DKYDVIS 268 (672)
Q Consensus 204 Gt~~~~I~~~l~--~G~~vIldi~~~g~---~~l~~~-~---~~~~vIfI~~ps~e~l~~RL~~Rg~------~~~e~i~ 268 (672)
...+...+. .|..+|++..+... ..+... . ....+||+.+| ++++.+|+..|+. ++.+.+.
T Consensus 71 ---~~~l~~~i~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~r~~~~~~~~~ 146 (194)
T 1qf9_A 71 ---VKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCP-EEVMTQRLLKRGESSGRSDDNIESIK 146 (194)
T ss_dssp ---HHHHHHHHHTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECC-HHHHHHHHHHHHTTSCCTTCSHHHHH
T ss_pred ---HHHHHHHHHhcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECC-HHHHHHHHHhccccCCCCCCCHHHHH
Confidence 112222232 46778888643322 222211 1 12346788865 9999999998753 2367788
Q ss_pred HHHHHHHHH----hhhcCCCc--EEEEcC-CHHHHHHHHHHHHHh
Q psy11425 269 RRILSANKE----ISYANKFD--YIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 269 ~rl~~~~~e----~~~~~~~D--~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
+|+..+..+ ..+...+| ++|.|+ +++++.++|.+++..
T Consensus 147 ~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 147 KRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191 (194)
T ss_dssp HHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 888765422 12323356 667766 699999999998865
No 33
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.20 E-value=1e-10 Score=115.99 Aligned_cols=162 Identities=17% Similarity=0.136 Sum_probs=101.0
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchH
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFF 208 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~ 208 (672)
.|+|+|||||||||+++.|.+.+...++...++.|...... .. ....+...+..|.++...... .
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~---~~----~~~~~~~~~~~g~~~~~~~~~--------~ 66 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEE---TP----LGLEAKSYIDKGELVPDEVTI--------G 66 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTT---CH----HHHHHHHHHTTTCCCCHHHHH--------H
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcC---CH----HHHHHHHHHHCCCCCCHHHHH--------H
Confidence 48999999999999999998876444555556665532221 10 123344445555554432211 1
Q ss_pred HHHHHHh---cCCeEEEEeeHHH---HHHHHH----hCCC-cEEEEEeCCCHHHHHHHHHHc------------------
Q psy11425 209 PIVREIK---SNVDILLEIDFQG---AKQIKK----KFPN-AIGIFILPPSLDSLKERLYKR------------------ 259 (672)
Q Consensus 209 ~I~~~l~---~G~~vIldi~~~g---~~~l~~----~~~~-~~vIfI~~ps~e~l~~RL~~R------------------ 259 (672)
.+...+. .+..++++..|.. ...+.. .... ..+|++.+| ++++.+|+..|
T Consensus 67 ~~~~~l~~~~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~ 145 (216)
T 3dl0_A 67 IVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVD-KDVLMERLTGRRICSVCGTTYHLVFNPPK 145 (216)
T ss_dssp HHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECC-GGGHHHHHHTEEEETTTCCEEETTTBCCS
T ss_pred HHHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHCCCcCCccCCccccccCCCc
Confidence 2223332 3677899954333 233332 1222 256888876 89999999998
Q ss_pred ---------------CCCCHHHHHHHHHHHHHHh----hhc-C-CCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 260 ---------------GQDKYDVISRRILSANKEI----SYA-N-KFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 260 ---------------g~~~~e~i~~rl~~~~~e~----~~~-~-~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
.+++.+.+.+|+..+..+. .|. . ...++|.|+ ++++++.+|.++|..
T Consensus 146 ~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3dl0_A 146 TPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGG 214 (216)
T ss_dssp STTBCTTTCCBEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGG
T ss_pred ccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 5678889999998765432 221 1 134566666 699999999999875
No 34
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.20 E-value=4.1e-11 Score=116.39 Aligned_cols=166 Identities=11% Similarity=0.047 Sum_probs=90.2
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHh---HhccccCc
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAE---VHGNFYGT 205 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~---~~g~~YGt 205 (672)
+|+|+|++||||||+++.|.+.+...++.+ .+|+.|. +..+ -+.+...+..+.+..+.. +....+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v-~~~~~~~-----~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 71 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKV-ILKREPG-----GTET----GEKIRKILLEEEVTPKAELFLFLASRNLL 71 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-E-EEEESSC-----SSHH----HHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE-EEeeCCC-----CCcH----HHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 799999999999999999988742112222 2344432 1111 233444444455544322 11222222
Q ss_pred chHHHHHHHhcCCeEEEEe---------------eHHHHHHHHHh---CC-CcEEEEEeCCCHHHHHHHHHHcCCCCHHH
Q psy11425 206 SFFPIVREIKSNVDILLEI---------------DFQGAKQIKKK---FP-NAIGIFILPPSLDSLKERLYKRGQDKYDV 266 (672)
Q Consensus 206 ~~~~I~~~l~~G~~vIldi---------------~~~g~~~l~~~---~~-~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~ 266 (672)
... +...+.+|..+++|- +...+..+... .+ ...+||+.+| ++++.+|+..|+..+...
T Consensus 72 ~~~-i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~~ 149 (197)
T 2z0h_A 72 VTE-IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVD-VETALKRKGELNRFEKRE 149 (197)
T ss_dssp HHH-HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHC---CCCCCHH
T ss_pred HHH-HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCC-HHHHHHHHhccCcccHHH
Confidence 222 444566788888882 23333333221 11 3456788876 899999999987655456
Q ss_pred HHHHHHHHHHHhhhcCCCc-EEEEcC-CHHHHHHHHHHHHHh
Q psy11425 267 ISRRILSANKEISYANKFD-YIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 267 i~~rl~~~~~e~~~~~~~D-~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
+..++..+..+.......+ ++|.|+ +++++.+++.+++..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~ 191 (197)
T 2z0h_A 150 FLERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKR 191 (197)
T ss_dssp HHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 6666665544433222344 456665 599999999998864
No 35
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.19 E-value=4e-11 Score=124.72 Aligned_cols=177 Identities=12% Similarity=0.019 Sum_probs=98.5
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceeeccc-ccc-cCCCCC--------CCCcccc----cCCHHHHHHHHHcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSIST-TTR-PMRPGE--------KNGREYY----FTNIDNFKKLQKSG 190 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~-TTR-~~r~~E--------~~G~dY~----fvs~~~F~~~i~~g 190 (672)
..+.+|+|+|++||||||+++.|.+.+ +.+.... ..| ...++. ..|..+. .+++..+...+...
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~lg--~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~ 150 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKNLG--AYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN 150 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHHHT--CEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHCC--CcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence 346799999999999999999999654 2221111 000 011110 1122111 23444443322211
Q ss_pred -CchhHHh--HhccccCcchHHHHHHHhcC-CeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHH
Q psy11425 191 -KFLEWAE--VHGNFYGTSFFPIVREIKSN-VDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDV 266 (672)
Q Consensus 191 -~fle~~~--~~g~~YGt~~~~I~~~l~~G-~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~ 266 (672)
....+.+ .+...|....+.+......+ ..+|+++....-..+. . ....+|||.+| ++++.+|+..|+..+.+.
T Consensus 151 ~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~~~~-~-~~d~vI~l~a~-~ev~~~Rl~~R~g~s~e~ 227 (281)
T 2f6r_A 151 KKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAGWQ-S-MVHEVWTVVIP-ETEAVRRIVERDGLSEAA 227 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTTTGG-G-GCSEEEEEECC-HHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhccchH-H-hCCEEEEEcCC-HHHHHHHHHHcCCCCHHH
Confidence 1111110 01111111112222222333 5788887532111111 1 12467999987 999999999886567778
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 267 ISRRILSANKEISYANKFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 267 i~~rl~~~~~e~~~~~~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
+..++..+.....+...+|++|.|+ +++++.++|..++..
T Consensus 228 ~~~ri~~q~~~~~~~~~AD~vIdn~~s~eel~~~I~~~l~~ 268 (281)
T 2f6r_A 228 AQSRLQSQMSGQQLVEQSNVVLSTLWESHVTQSQVEKAWNL 268 (281)
T ss_dssp HHHHHHTSCCHHHHHHTCSEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHhhHhhCCEEEECCCCHHHHHHHHHHHHHH
Confidence 8888877643344445789999998 699999999998864
No 36
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.18 E-value=6.7e-11 Score=117.14 Aligned_cols=162 Identities=17% Similarity=0.149 Sum_probs=99.2
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchH
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFF 208 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~ 208 (672)
.|+|+|||||||||+++.|.+.+...++....+.|...... .. ....+...+..|.++..... ..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~---~~----~~~~~~~~~~~g~~~~~~~~--------~~ 66 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNG---TE----LGLKAKSFMDQGNLVPDEVT--------IG 66 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTT---CH----HHHHHHHHHHHTCCCCHHHH--------HH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcC---CH----HHHHHHHHHHCCCCCCHHHH--------HH
Confidence 58999999999999999998775444455555555432221 11 12334444555555443211 11
Q ss_pred HHHHHHh---cCCeEEEEeeHHH---HHHHHHh----CCC-cEEEEEeCCCHHHHHHHHHHc------------------
Q psy11425 209 PIVREIK---SNVDILLEIDFQG---AKQIKKK----FPN-AIGIFILPPSLDSLKERLYKR------------------ 259 (672)
Q Consensus 209 ~I~~~l~---~G~~vIldi~~~g---~~~l~~~----~~~-~~vIfI~~ps~e~l~~RL~~R------------------ 259 (672)
.+...+. .+..+|++..+.. ...+... ... ..+||+.+| ++++.+|+..|
T Consensus 67 ~~~~~l~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~ 145 (216)
T 3fb4_A 67 IVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVE-QEELMKRLTGRWICKTCGATYHTIFNPPA 145 (216)
T ss_dssp HHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHSEEEETTTCCEEETTTBCCS
T ss_pred HHHHHHhcccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCCCCccCCccccccCCCC
Confidence 2223332 3677888864333 2333321 222 356888876 89999999998
Q ss_pred ---------------CCCCHHHHHHHHHHHHHHh----h-hcCC-CcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 260 ---------------GQDKYDVISRRILSANKEI----S-YANK-FDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 260 ---------------g~~~~e~i~~rl~~~~~e~----~-~~~~-~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
.+++.+.+.+|+..+..+. . |... ..++|.|+ ++++++++|.++|..
T Consensus 146 ~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3fb4_A 146 VEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214 (216)
T ss_dssp STTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred cccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 4567788999998765432 2 2222 34566666 599999999999875
No 37
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.18 E-value=4.7e-11 Score=115.84 Aligned_cols=168 Identities=17% Similarity=0.278 Sum_probs=97.8
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeeccccccc-CCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRP-MRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYG 204 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~-~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YG 204 (672)
++++|+|+|++||||||+++.|.+.+...++......|. ++.+ ..+ ...+...+..|.++..... +.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~----~~~----~~~i~~~~~~g~~~~~~~~----~~ 75 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSG----SAR----GKKLSEIMEKGQLVPLETV----LD 75 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTT----CHH----HHHHHHHHHTTCCCCHHHH----HH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcC----ChH----HHHHHHHHHcCCcCCHHHH----HH
Confidence 467999999999999999999987642222222222222 1111 111 1233344444554332211 22
Q ss_pred cchHHHHHHHhcCCeEEEEeeHHHHHH---HHHhCCC-cEEEEEeCCCHHHHHHHHHHcCC------CCHHHHHHHHHHH
Q psy11425 205 TSFFPIVREIKSNVDILLEIDFQGAKQ---IKKKFPN-AIGIFILPPSLDSLKERLYKRGQ------DKYDVISRRILSA 274 (672)
Q Consensus 205 t~~~~I~~~l~~G~~vIldi~~~g~~~---l~~~~~~-~~vIfI~~ps~e~l~~RL~~Rg~------~~~e~i~~rl~~~ 274 (672)
.....+...+..|..+|+|+.+..... +...... ..+||+.+| ++++.+|+..|+. .+.+.+.+|+..+
T Consensus 76 ~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~ 154 (196)
T 2c95_A 76 MLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAG-PETMTQRLLKRGETSGRVDDNEETIKKRLETY 154 (196)
T ss_dssp HHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECC-HHHHHHHHHccCCcCCCCCCCHHHHHHHHHHH
Confidence 223344445557888999975444332 2232332 367888876 9999999998852 3456777777765
Q ss_pred HHHhh----hcCCCc--EEEEcC-CHHHHHHHHHHHHHh
Q psy11425 275 NKEIS----YANKFD--YIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 275 ~~e~~----~~~~~D--~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
..+.. +....| ++|.|+ +++++.++|.+++..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~ 193 (196)
T 2c95_A 155 YKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDA 193 (196)
T ss_dssp HHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHH
Confidence 44321 112234 346655 699999999998864
No 38
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.14 E-value=7.1e-10 Score=108.61 Aligned_cols=170 Identities=21% Similarity=0.267 Sum_probs=98.2
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccC--CCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhcc
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPM--RPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGN 201 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~--r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~ 201 (672)
+..+++|+|+|++||||||+++.|.+.+...++......|.. +.+ ..+ .+.+...+..|.+......
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~----~~~----~~~i~~~~~~g~~~~~~~~--- 80 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAG----SQY----GELIKNCIKEGQIVPQEIT--- 80 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTT----CSC----HHHHHHHHHTTCCCCHHHH---
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccC----CHH----HHHHHHHHHcCCcCCHHHH---
Confidence 345679999999999999999999877532233333333321 112 111 2334444445554322111
Q ss_pred ccCcchHHHHHHHhcC-CeEEEEeeHH---HHHHHHHhCC-CcEEEEEeCCCHHHHHHHHHHcC------CCCHHHHHHH
Q psy11425 202 FYGTSFFPIVREIKSN-VDILLEIDFQ---GAKQIKKKFP-NAIGIFILPPSLDSLKERLYKRG------QDKYDVISRR 270 (672)
Q Consensus 202 ~YGt~~~~I~~~l~~G-~~vIldi~~~---g~~~l~~~~~-~~~vIfI~~ps~e~l~~RL~~Rg------~~~~e~i~~r 270 (672)
+......+...+..| ..+++++.+. ....+..... ...+||+.+| ++++.+|+..|+ .++.+.+.+|
T Consensus 81 -~~~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~-~e~~~~Rl~~R~~~~~~~~~~~e~~~~r 158 (203)
T 1ukz_A 81 -LALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCP-EDIMLERLLERGKTSGRSDDNIESIKKR 158 (203)
T ss_dssp -HHHHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHHHHHHHHCCTTCSHHHHHHH
T ss_pred -HHHHHHHHHhhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECC-HHHHHHHHHhccccCCCCCCCHHHHHHH
Confidence 112233444556666 4677776432 2223333333 3467888876 899999998774 2456777777
Q ss_pred HHHHHH----HhhhcCCCcEE--EEcC-CHHHHHHHHHHHHHh
Q psy11425 271 ILSANK----EISYANKFDYI--IINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 271 l~~~~~----e~~~~~~~D~V--I~Nd-dle~a~~qL~~iI~~ 306 (672)
+..... ...+...+|++ |.|+ ++++++.+|.++|..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 159 FNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRD 201 (203)
T ss_dssp HHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 655322 22323345543 4555 699999999998864
No 39
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.13 E-value=1.1e-10 Score=114.95 Aligned_cols=67 Identities=12% Similarity=0.088 Sum_probs=48.2
Q ss_pred cEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcCCCcEEEEcC-CHH----HHHHHHHHHHHh
Q psy11425 239 AIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINN-KFS----KALLQLKAIINA 306 (672)
Q Consensus 239 ~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~~~~D~VI~Nd-dle----~a~~qL~~iI~~ 306 (672)
..+|||.+| ++++.+|+..|+..+.+.+..++..+.....+...+|++|.|+ +++ ++.++|..++..
T Consensus 125 d~vi~l~~~-~e~~~~Rl~~R~~~~~e~~~~r~~~q~~~~~~~~~ad~vIdn~~~~~~~~~~~~~~i~~~~~~ 196 (206)
T 1jjv_A 125 DRILVVDVS-PQTQLARSAQRDNNNFEQIQRIMNSQVSQQERLKWADDVINNDAELAQNLPHLQQKVLELHQF 196 (206)
T ss_dssp SEEEEEECC-HHHHHHHHC-----CHHHHHHHHHHSCCHHHHHHHCSEEEECCSCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhcCChHHHHHhCCEEEECCCCccccHHHHHHHHHHHHHH
Confidence 467999876 9999999999866677888888877533333344789999998 589 888888888754
No 40
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.13 E-value=3.7e-10 Score=114.02 Aligned_cols=170 Identities=14% Similarity=0.193 Sum_probs=96.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCc-hhHHh---Hhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKF-LEWAE---VHG 200 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~f-le~~~---~~g 200 (672)
.++.+|+|.|++||||||+++.|.+.... +..+ .+|+.|...+ ..+.+...+..+.. ..+.. +..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~-~~~~~p~~~~---------~g~~i~~~~~~~~~~~~~~~~ll~~a 92 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV-IMTREPGGVP---------TGEEIRKIVLEGNDMDIRTEAMLFAA 92 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE-EEECTTTTCH---------HHHHHHHHTTC---CCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc-eeecCCCCCc---------hHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 36789999999999999999999988643 3333 3455554221 12445555555542 22211 111
Q ss_pred cccCcchHHHHHHHhcCCeEEEE----------e-----eHHHHHHHHH---hCC-CcEEEEEeCCCHHHHHHHHHHcCC
Q psy11425 201 NFYGTSFFPIVREIKSNVDILLE----------I-----DFQGAKQIKK---KFP-NAIGIFILPPSLDSLKERLYKRGQ 261 (672)
Q Consensus 201 ~~YGt~~~~I~~~l~~G~~vIld----------i-----~~~g~~~l~~---~~~-~~~vIfI~~ps~e~l~~RL~~Rg~ 261 (672)
..+......+...++.|..||+| + +...+..+.. ..+ -..+||+..| ++++.+|+..|+.
T Consensus 93 ~r~~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~-~e~~~~R~~~R~~ 171 (229)
T 4eaq_A 93 SRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVS-AEVGRERIIKNSR 171 (229)
T ss_dssp HHHHHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhcCC
Confidence 12222222345667789999999 3 3332223322 222 2356888876 8999999999853
Q ss_pred C----C--HHHHHHHHHHHHHHhhhcCCCcEE-EEcC-CHHHHHHHHHHHHHh
Q psy11425 262 D----K--YDVISRRILSANKEISYANKFDYI-IINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 262 ~----~--~e~i~~rl~~~~~e~~~~~~~D~V-I~Nd-dle~a~~qL~~iI~~ 306 (672)
. . .....+++.....+........++ |.++ +++++.++|.++|..
T Consensus 172 ~~dr~e~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eev~~~I~~~l~~ 224 (229)
T 4eaq_A 172 DQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIK 224 (229)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHTTTCTTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred CccchhhhhHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2 1 233445554443333211122344 5444 599999999998865
No 41
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.12 E-value=2.5e-10 Score=111.92 Aligned_cols=166 Identities=16% Similarity=0.143 Sum_probs=94.9
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhcCCCceeeccccccc-CCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhcc
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRP-MRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGN 201 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~-~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~ 201 (672)
.+.++.+|+|+|++||||||+++.|.+.+....+......|. ...+ ..+ ...+...+..|.+.......
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~----~~~----g~~i~~~~~~g~~~~~~~~~-- 85 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEG----TKL----GVEAKRYLDAGDLVPSDLTN-- 85 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTT----CHH----HHHHHHHHHHTCCCCHHHHH--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcC----ChH----HHHHHHHHHcCCcccHHHHH--
Confidence 345667999999999999999999988642222222233332 1111 100 12233333333332211100
Q ss_pred ccCcchHHHHHHH---hcCCeEEEEeeHHHH------HH-HHHhCC-CcEEEEEeCCCHHHHHHHHHHcCC--CCHHHHH
Q psy11425 202 FYGTSFFPIVREI---KSNVDILLEIDFQGA------KQ-IKKKFP-NAIGIFILPPSLDSLKERLYKRGQ--DKYDVIS 268 (672)
Q Consensus 202 ~YGt~~~~I~~~l---~~G~~vIldi~~~g~------~~-l~~~~~-~~~vIfI~~ps~e~l~~RL~~Rg~--~~~e~i~ 268 (672)
..+...+ ..|..+|+|..+... .. +..... ...+||+.+| ++++.+|+..|++ ++.+.+.
T Consensus 86 ------~~~~~~~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~-~e~~~~Rl~~R~r~~~~~e~~~ 158 (201)
T 2cdn_A 86 ------ELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVS-EEVLLERLKGRGRADDTDDVIL 158 (201)
T ss_dssp ------HHHHHHTTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHHHCCTTCSHHHHH
T ss_pred ------HHHHHHHhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCCCCCCHHHHH
Confidence 1111111 245668888644322 11 222222 2367888876 8999999999865 4567777
Q ss_pred HHHHHHHHHh----hhcCCCcEEEEcC-CHHHHHHHHHHHHH
Q psy11425 269 RRILSANKEI----SYANKFDYIIINN-KFSKALLQLKAIIN 305 (672)
Q Consensus 269 ~rl~~~~~e~----~~~~~~D~VI~Nd-dle~a~~qL~~iI~ 305 (672)
+++..+..+. .+....+++|.|+ +++++.++|.++|.
T Consensus 159 ~r~~~~~~~~~~~~~~~~~~~~~Id~~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 159 NRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVFARALRALG 200 (201)
T ss_dssp HHHHHHHHHTTTHHHHTTTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHhcCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 8877665432 2335577888776 69999999988764
No 42
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.11 E-value=1.5e-10 Score=113.65 Aligned_cols=159 Identities=12% Similarity=0.101 Sum_probs=91.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYG 204 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YG 204 (672)
.++++|+|+|+|||||||+++.|.+... +.+......+ ....... ...+..........
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg-~~~i~~d~~~---------------~~~~~~~-~~~g~~~~~~~~~~---- 74 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEACG-YPFIEGDALH---------------PPENIRK-MSEGIPLTDDDRWP---- 74 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHHHT-CCEEEGGGGC---------------CHHHHHH-HHHTCCCCHHHHHH----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-CEEEeCCcCc---------------chhhHHH-HhcCCCCCchhhHH----
Confidence 3467999999999999999999988742 2222111110 1111111 11111111100000
Q ss_pred cchHHHHHHHhcCCeEEEEee---HHHHHHHHHhCCC-cEEEEEeCCCHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHh
Q psy11425 205 TSFFPIVREIKSNVDILLEID---FQGAKQIKKKFPN-AIGIFILPPSLDSLKERLYKRGQD--KYDVISRRILSANKEI 278 (672)
Q Consensus 205 t~~~~I~~~l~~G~~vIldi~---~~g~~~l~~~~~~-~~vIfI~~ps~e~l~~RL~~Rg~~--~~e~i~~rl~~~~~e~ 278 (672)
....+...+..|..+|++.. ......+...... ..+||+.+| .+++.+|+..|+.. ..+.+. .+....
T Consensus 75 -~~~~l~~~~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~-~e~~~~Rl~~R~~~~~~~~~~~----~~~~~~ 148 (202)
T 3t61_A 75 -WLAAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGS-ESVLAERMHHRTGHFMPSSLLQ----TQLETL 148 (202)
T ss_dssp -HHHHHHHHHTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECC-HHHHHHHHHHHHSSCCCHHHHH----HHHHHC
T ss_pred -HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCC-HHHHHHHHHHhhccCCCHHHHH----HHHHhc
Confidence 01233445567888888853 3444445554443 466888876 99999999988642 322222 222222
Q ss_pred --hhcCCCcEEEEcC-CHHHHHHHHHHHHHhcccc
Q psy11425 279 --SYANKFDYIIINN-KFSKALLQLKAIINANRCF 310 (672)
Q Consensus 279 --~~~~~~D~VI~Nd-dle~a~~qL~~iI~~~~~~ 310 (672)
.+....+++|.|+ +++++.++|.++|......
T Consensus 149 ~~~~~~~~~~~Id~~~~~~e~~~~I~~~l~~~~~~ 183 (202)
T 3t61_A 149 EDPRGEVRTVAVDVAQPLAEIVREALAGLARLAEN 183 (202)
T ss_dssp CCCTTSTTEEEEESSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCeEEEeCCCCHHHHHHHHHHHHHHhhhc
Confidence 1344578888887 6999999999999765443
No 43
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.11 E-value=2.7e-10 Score=109.04 Aligned_cols=162 Identities=13% Similarity=0.094 Sum_probs=88.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCC-Ccee-eccc--ccccCCCC-CCCCcccccCCHHHHHHHHHcCCchhHHhHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDH-KIKL-SIST--TTRPMRPG-EKNGREYYFTNIDNFKKLQKSGKFLEWAEVHG 200 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~-~v~~--TTR~~r~~-E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g 200 (672)
|+++|+|+|+|||||||+++.|.+..+ .+.. .... .+++++.. +..|.+|.- .| .+... ....
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~----~~-------~~~~~-~~~~ 69 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDA----DG-------GVSIG-PEFR 69 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECT----TS-------CEEEC-HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccC----CC-------ccccc-hhHH
Confidence 568999999999999999999998764 2222 1211 13333322 222333310 00 00000 0011
Q ss_pred cccCcchHHHHHHHhcCCeEEEEeeHH-H---HHHHHHhCC--CcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Q psy11425 201 NFYGTSFFPIVREIKSNVDILLEIDFQ-G---AKQIKKKFP--NAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSA 274 (672)
Q Consensus 201 ~~YGt~~~~I~~~l~~G~~vIldi~~~-g---~~~l~~~~~--~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~ 274 (672)
..|+.....+...+..|..+|+++.+. + ...+++... ...+||+.+| ++++.+|+..|+........ .+
T Consensus 70 ~~~~~~~~~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~-~e~l~~R~~~r~~~~~~~~~----~~ 144 (178)
T 1qhx_A 70 ALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCD-GAVAEGRETARGDRVAGMAA----KQ 144 (178)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECC-HHHHHHHHHHTSSSCTTHHH----HH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECC-HHHHHHHHHhhCCcccchhh----hh
Confidence 122222234455667788899988541 1 223333332 2356777765 99999999998754322111 11
Q ss_pred HHHhhhcCCCcEEEEcC--CHHHHHHHHHHHH
Q psy11425 275 NKEISYANKFDYIIINN--KFSKALLQLKAII 304 (672)
Q Consensus 275 ~~e~~~~~~~D~VI~Nd--dle~a~~qL~~iI 304 (672)
.........+|++|.++ +++++.++|.+.+
T Consensus 145 ~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 145 AYVVHEGVEYDVEVDTTHKESIECAWAIAAHV 176 (178)
T ss_dssp TTGGGTTCCCSEEEETTSSCHHHHHHHHHTTC
T ss_pred chhhccCCCCcEEEECCCCCHHHHHHHHHHHh
Confidence 11111123589999876 4888888876543
No 44
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.10 E-value=2.1e-10 Score=111.53 Aligned_cols=168 Identities=16% Similarity=0.186 Sum_probs=93.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccc-cccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTT-TRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYG 204 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~T-TR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YG 204 (672)
++++|+|+|++||||||+++.|.+.+...++..... ++.+..+... ...+...+..|..+........
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~--------~~~i~~~~~~g~~~~~~~~~~~--- 79 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESER--------SKLIRDIMERGDLVPSGIVLEL--- 79 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHH--------HHHHHHHHHTTCCCCHHHHHHH---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHH--------HHHHHHHHHcCCcCCHHHHHHH---
Confidence 567999999999999999999998742222222221 1111111000 1122233334443322111111
Q ss_pred cchHHHHHHHhcCCeEEEEeeHHH---HHHHHHhC-CCcEEEEEeCCCHHHHHHHHHHcCCC------CHHHHHHHHHHH
Q psy11425 205 TSFFPIVREIKSNVDILLEIDFQG---AKQIKKKF-PNAIGIFILPPSLDSLKERLYKRGQD------KYDVISRRILSA 274 (672)
Q Consensus 205 t~~~~I~~~l~~G~~vIldi~~~g---~~~l~~~~-~~~~vIfI~~ps~e~l~~RL~~Rg~~------~~e~i~~rl~~~ 274 (672)
....+...+..|..+|+|..+.. ...+.... ....+||+.+| ++++.+|+..|+.. +.+.+.+|+..+
T Consensus 80 -~~~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~ 157 (199)
T 2bwj_A 80 -LKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCS-ADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAY 157 (199)
T ss_dssp -HHHHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECC-HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHH
Confidence 12233334446788999964322 23344332 22367899976 99999999998752 235566676554
Q ss_pred HHHhh-----hcCCCc-EEEEcC-CHHHHHHHHHHHHHh
Q psy11425 275 NKEIS-----YANKFD-YIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 275 ~~e~~-----~~~~~D-~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
..... |....+ ++|.|+ ++++++++|.+++..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~ 196 (199)
T 2bwj_A 158 YRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDS 196 (199)
T ss_dssp HHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 43321 222233 455555 699999999998864
No 45
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.09 E-value=3.6e-10 Score=114.71 Aligned_cols=179 Identities=15% Similarity=0.102 Sum_probs=100.9
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHc----CCchhHHh---
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKS----GKFLEWAE--- 197 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~----g~fle~~~--- 197 (672)
+++++|+|.|++||||||+++.|.+.....++.+..+||.|...+ + -+.|...+.. ..+-.+.+
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~-----~----g~~ir~~l~~~~~~~~~~~~~e~lL 95 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTL-----L----AEKLRALVKEEHPGEELQDITELLL 95 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSH-----H----HHHHHHHHHSCCTTSCCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCH-----H----HHHHHHHHhhCCCcccCCHHHHHHH
Confidence 357899999999999999999998876433444346777764221 1 2455555542 22322211
Q ss_pred HhccccCcchHHHHHHHhcCCeEEEE------eeHHH---------HHHHHHh---CCC-cEEEEEeCCCHHHHHHHHHH
Q psy11425 198 VHGNFYGTSFFPIVREIKSNVDILLE------IDFQG---------AKQIKKK---FPN-AIGIFILPPSLDSLKERLYK 258 (672)
Q Consensus 198 ~~g~~YGt~~~~I~~~l~~G~~vIld------i~~~g---------~~~l~~~---~~~-~~vIfI~~ps~e~l~~RL~~ 258 (672)
+....+......|...+++|.+||+| +-+++ +..+... .+. ..+||++.| +++..+|+.+
T Consensus 96 f~A~R~~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~-~e~~~~Ri~~ 174 (236)
T 3lv8_A 96 VYAARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDID-PKLGLERARG 174 (236)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHh
Confidence 22233433344566778899999999 22222 2333321 222 356888876 9999999998
Q ss_pred cCCCC-----HHHHHHHHHHHHHHhhhcCCCcEEEEcC-CHHHHHHHHHHHHHhccccccc
Q psy11425 259 RGQDK-----YDVISRRILSANKEISYANKFDYIIINN-KFSKALLQLKAIINANRCFMAR 313 (672)
Q Consensus 259 Rg~~~-----~e~i~~rl~~~~~e~~~~~~~D~VI~Nd-dle~a~~qL~~iI~~~~~~m~r 313 (672)
|+..+ ..+...++.....++........+|.++ ++++..++|.++|...-..++|
T Consensus 175 R~~~dr~E~~~~~~~~rv~~~y~~la~~~~~~~vIDa~~sieeV~~~I~~~l~~~l~~~~~ 235 (236)
T 3lv8_A 175 RGELDRIEKMDISFFERARERYLELANSDDSVVMIDAAQSIEQVTADIRRALQDWLSQVNR 235 (236)
T ss_dssp --CCCTTTTSCHHHHHHHHHHHHHHHHHCTTEEEEETTSCHHHHHHHHHHHHHHHHTTCC-
T ss_pred cCCcchhhhhHHHHHHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 86311 1244455554443332211124455544 5999999999999765444444
No 46
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.06 E-value=3.7e-10 Score=107.74 Aligned_cols=156 Identities=15% Similarity=0.092 Sum_probs=78.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCC--cccccCCHHHHHHHHHcCCchhHHhHhcccc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNG--REYYFTNIDNFKKLQKSGKFLEWAEVHGNFY 203 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G--~dY~fvs~~~F~~~i~~g~fle~~~~~g~~Y 203 (672)
|+++|+|+|+|||||||+++.|.+...++.+...+..|....+...| ..| +.+. . ...+
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~~~~~~~~~~---~~~~-~---------------~~~~ 61 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKY---TKKK-E---------------GIVT 61 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCC---CHHH-H---------------HHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhCCCccchhhh---chhh-h---------------hHHH
Confidence 56799999999999999999998832233333334444332221111 111 1100 0 0011
Q ss_pred CcchHHHHHHH---hcCCeEEEEeeHHH------HHHHH-HhCCCcEEEEEeCCCHHHHHHHHHHcC--CCCHHHHHHHH
Q psy11425 204 GTSFFPIVREI---KSNVDILLEIDFQG------AKQIK-KKFPNAIGIFILPPSLDSLKERLYKRG--QDKYDVISRRI 271 (672)
Q Consensus 204 Gt~~~~I~~~l---~~G~~vIldi~~~g------~~~l~-~~~~~~~vIfI~~ps~e~l~~RL~~Rg--~~~~e~i~~rl 271 (672)
......+...+ ..|..+|+|..+.. +..+. .......+||+.+ +.+++.+|+..|+ ..+.+.+.+++
T Consensus 62 ~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~-~~~~~~~R~~~R~~~~~~~~~i~~~~ 140 (181)
T 1ly1_A 62 GMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDV-PWTELVKRNSKRGTKAVPIDVLRSMY 140 (181)
T ss_dssp HHHHHHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCC-CHHHHHHHHTTCGGGCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeC-CHHHHHHHHhccccCCCCHHHHHHHH
Confidence 12233455666 77889999864422 22222 2222346788886 5999999999987 45667777777
Q ss_pred HHHHHHhhhcCCCcEEEEcCCH-HHHHHHHHHHHH
Q psy11425 272 LSANKEISYANKFDYIIINNKF-SKALLQLKAIIN 305 (672)
Q Consensus 272 ~~~~~e~~~~~~~D~VI~Nddl-e~a~~qL~~iI~ 305 (672)
........+ -.++ +|.+. ++...++...+.
T Consensus 141 ~~~~~~~~~---~~~~-id~~~~~~v~~~i~~~l~ 171 (181)
T 1ly1_A 141 KSMREYLGL---PVYN-GTPGKPKAVIFDVDGTLA 171 (181)
T ss_dssp HHHHHHHTC---CCC--------------------
T ss_pred HHhhccCCC---Cccc-cCCCCCceeeehhhhhhh
Confidence 665544322 1345 45554 666666665554
No 47
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.04 E-value=7.1e-10 Score=107.03 Aligned_cols=173 Identities=16% Similarity=0.139 Sum_probs=90.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGT 205 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt 205 (672)
++.+|+|+|++||||||+++.|.+.+...++......+.... ..+..+ ...+...+..|............+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~--~~~~~~----~~~~~~~~~~g~~~~~~~~~~~l~~~ 75 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERK--NPDSQY----GELIEKYIKEGKIVPVEITISLLKRE 75 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH--CTTSTT----HHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHh--ccCChH----HHHHHHHHHCCCcCCHHHHHHHHHHH
Confidence 467999999999999999999988642212222111111100 001111 12222223333322111001000100
Q ss_pred chHHHHHHHhcCCeEEEEeeHHHHH---HHHHh---CC-CcEEEEEeCCCHHHHHHHHHHcCC------CCHHHHHHHHH
Q psy11425 206 SFFPIVREIKSNVDILLEIDFQGAK---QIKKK---FP-NAIGIFILPPSLDSLKERLYKRGQ------DKYDVISRRIL 272 (672)
Q Consensus 206 ~~~~I~~~l~~G~~vIldi~~~g~~---~l~~~---~~-~~~vIfI~~ps~e~l~~RL~~Rg~------~~~e~i~~rl~ 272 (672)
.......+..+..+|+|..+.... .+... .. ...+||+.+| ++++.+|+..|+. .+.+.+.+++.
T Consensus 76 -~~~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~ 153 (196)
T 1tev_A 76 -MDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCN-NEICIERCLERGKSSGRSDDNRESLEKRIQ 153 (196)
T ss_dssp -HHHHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECC-HHHHHHHHHHHHHTSSCCSCCHHHHHHHHH
T ss_pred -HHhhhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECC-HHHHHHHHHcccccCCCCCCCHHHHHHHHH
Confidence 011111123477888886443222 22221 11 2357888876 9999999987631 24566777776
Q ss_pred HHHHHhh-----hcCCCcE-EEEcC-CHHHHHHHHHHHHHh
Q psy11425 273 SANKEIS-----YANKFDY-IIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 273 ~~~~e~~-----~~~~~D~-VI~Nd-dle~a~~qL~~iI~~ 306 (672)
.+..... |....++ +|.|+ +++++.++|.+++.+
T Consensus 154 ~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 154 TYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 6544322 3445676 56665 599999999998864
No 48
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.03 E-value=2e-09 Score=103.92 Aligned_cols=164 Identities=12% Similarity=0.106 Sum_probs=91.0
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCC--CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHh---Hhcccc
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDH--KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAE---VHGNFY 203 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~--~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~---~~g~~Y 203 (672)
+|+|+|++||||||+++.|.+... ++.+. . ++.+.. ..+ .+.|...+..|.+..... +....+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i--~-~d~~~~-----~~~----~~~i~~~~~~g~~~~~~~~~~~~~~~~ 69 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS--L-YREPGG-----TKV----GEVLREILLTEELDERTELLLFEASRS 69 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEE--E-EESSCS-----SHH----HHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE--E-EeCCCC-----Cch----HHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999988641 22222 1 222211 111 123333343443322111 011111
Q ss_pred CcchHHHHHHHhcCCeEEEEee---------------HHHHHHHH---HhC-CCcEEEEEeCCCHHHHHHHHHHcCCCCH
Q psy11425 204 GTSFFPIVREIKSNVDILLEID---------------FQGAKQIK---KKF-PNAIGIFILPPSLDSLKERLYKRGQDKY 264 (672)
Q Consensus 204 Gt~~~~I~~~l~~G~~vIldi~---------------~~g~~~l~---~~~-~~~~vIfI~~ps~e~l~~RL~~Rg~~~~ 264 (672)
......+...+.+|..++++-. ...+..+. ... ....+||+.+| ++++.+|+.+|+..+.
T Consensus 70 ~~l~~~i~~~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~r~~~~~ 148 (195)
T 2pbr_A 70 KLIEEKIIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIP-VDIALRRLKEKNRFEN 148 (195)
T ss_dssp HHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCC-HHHHHHHhhccCccch
Confidence 1112233455667888888721 11222222 111 23467889876 8999999998766544
Q ss_pred HHHHHHHHHHHHHh-hhcCCCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 265 DVISRRILSANKEI-SYANKFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 265 e~i~~rl~~~~~e~-~~~~~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
+++..++.....+. .+. ..+++|.|+ +++++.++|.+++..
T Consensus 149 ~~~~~~~~~~~~~~~~~~-~~~~~Id~~~~~~~~~~~i~~~l~~ 191 (195)
T 2pbr_A 149 KEFLEKVRKGFLELAKEE-ENVVVIDASGEEEEVFKEILRALSG 191 (195)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTEEEEETTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhC-CCEEEEECCCCHHHHHHHHHHHHHH
Confidence 55566664433222 221 233888887 699999999998864
No 49
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.03 E-value=5.5e-10 Score=109.13 Aligned_cols=165 Identities=12% Similarity=0.182 Sum_probs=86.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCce-eecccccccCCCCCCCCcccccCCHHHHHHHHHcC-CchhHHh---Hhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIK-LSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSG-KFLEWAE---VHG 200 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~-~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g-~fle~~~---~~g 200 (672)
++++|+|+|++||||||+++.|.+.+.++. ......+|..+. | +.....+..+ .|-.+.. +..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~----g--------~~i~~~~~~~~~~~~~~~~~l~~~ 70 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVT----G--------KMIDDYLTRKKTYNDHIVNLLFCA 70 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHH----H--------HHHHHHHTSSCCCCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcH----H--------HHHHHHHhcCCCCCHHHHHHHHHH
Confidence 467999999999999999999999863332 222222211110 1 0011111111 1111100 000
Q ss_pred cccCcchHHHHHHHhcCCeEEEEeeH--------------HHHHHHHHhC-CCcEEEEEeCCCHHHHHHHHHHcCCCCHH
Q psy11425 201 NFYGTSFFPIVREIKSNVDILLEIDF--------------QGAKQIKKKF-PNAIGIFILPPSLDSLKERLYKRGQDKYD 265 (672)
Q Consensus 201 ~~YGt~~~~I~~~l~~G~~vIldi~~--------------~g~~~l~~~~-~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e 265 (672)
+.|.. ...+...+..|..+|+|-.+ ..+..+.... ....+||+.+| ++++.+ .|+.+..+
T Consensus 71 ~r~~~-~~~i~~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~-~e~~~~---~R~~d~~e 145 (204)
T 2v54_A 71 NRWEF-ASFIQEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESG-SKEINR---NVGEEIYE 145 (204)
T ss_dssp HHHTT-HHHHHHHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCC-HHHHTT---CCSSSTTC
T ss_pred HHHHH-HHHHHHHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCC-HHHHHh---hcCccccc
Confidence 11211 23455666778888888433 2222222221 12356888876 777666 56433222
Q ss_pred --HHHHHHHHHHHHhhhcCCCcE-EEEcC-CHHHHHHHHHHHHHhc
Q psy11425 266 --VISRRILSANKEISYANKFDY-IIINN-KFSKALLQLKAIINAN 307 (672)
Q Consensus 266 --~i~~rl~~~~~e~~~~~~~D~-VI~Nd-dle~a~~qL~~iI~~~ 307 (672)
.+.+++..+..+.......++ +|.|+ +++++.++|.+++...
T Consensus 146 ~~~~~~rl~~~y~~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l~~~ 191 (204)
T 2v54_A 146 DVTFQQKVLQEYKKMIEEGDIHWQIISSEFEEDVKKELIKNIVIEA 191 (204)
T ss_dssp CSHHHHHHHHHHHHHHTTCSSCEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHHHH
Confidence 566777665444432223454 45444 5999999999988653
No 50
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.01 E-value=5.2e-10 Score=109.99 Aligned_cols=170 Identities=10% Similarity=0.022 Sum_probs=92.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcC-Cchh---HHhHhcc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSG-KFLE---WAEVHGN 201 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g-~fle---~~~~~g~ 201 (672)
++++|+|+|++||||||+++.|.+.+...++.+ +++|.+..+...|. .+...+..+ .+-. ..-+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~~~~~~~g~--------~i~~~~~~~~~~~~~~~~~~~~~~ 79 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYFPNRETGIGQ--------IISKYLKMENSMSNETIHLLFSAN 79 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESSCTTSHHHH--------HHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEecCCCCCcHHH--------HHHHHHhcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999988642112222 34555432211111 111111111 1100 0000000
Q ss_pred ccCcchHHHHHHHhcCCeEEEEeeHHH---HH--------HHH----Hh-CCCcEEEEEeCCCHHHHHHHHHHc-CCCCH
Q psy11425 202 FYGTSFFPIVREIKSNVDILLEIDFQG---AK--------QIK----KK-FPNAIGIFILPPSLDSLKERLYKR-GQDKY 264 (672)
Q Consensus 202 ~YGt~~~~I~~~l~~G~~vIldi~~~g---~~--------~l~----~~-~~~~~vIfI~~ps~e~l~~RL~~R-g~~~~ 264 (672)
.+.. ...+...+..|..+|+|..+.. +. .+. .. .....+||+.+| ++++.+|+..| ++.+.
T Consensus 80 ~~~~-~~~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~r~~r~~~ 157 (212)
T 2wwf_A 80 RWEH-MNEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVP-PNYAQNRSDYGEEIYEK 157 (212)
T ss_dssp HHTT-HHHHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECC-TTGGGGSTTTTSSTTCS
T ss_pred HHHH-HHHHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCC-HHHHHHhhccCcccccH
Confidence 1111 1235566677888999865432 11 111 11 123357888876 78888998765 22333
Q ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEcC-CHHHHHHHHHHHHHhc
Q psy11425 265 DVISRRILSANKEISYANKFDYIIINN-KFSKALLQLKAIINAN 307 (672)
Q Consensus 265 e~i~~rl~~~~~e~~~~~~~D~VI~Nd-dle~a~~qL~~iI~~~ 307 (672)
+.+..++..+..+... ...+++|.|+ +++++.++|.+++...
T Consensus 158 ~~~~~~~~~~~~~~~~-~~~~~~Id~~~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 158 VETQKKIYETYKHFAH-EDYWINIDATRKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp HHHHHHHHHHGGGGTT-CTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhc-cCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 5556666554333322 4557778776 6999999999998654
No 51
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.01 E-value=5e-09 Score=99.06 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=45.6
Q ss_pred cEEEEEeCCCHHHHHHHHHHcCCCCH-HHHHHHHHHH-HHHhhhcCCCcEEEEcC--CHHHHHHHHHHHHHhccc
Q psy11425 239 AIGIFILPPSLDSLKERLYKRGQDKY-DVISRRILSA-NKEISYANKFDYIIINN--KFSKALLQLKAIINANRC 309 (672)
Q Consensus 239 ~~vIfI~~ps~e~l~~RL~~Rg~~~~-e~i~~rl~~~-~~e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~~~~~ 309 (672)
..+||+.+| ++++.+|+..|++... .....++... ..-.......+++|.|+ +++++.++|...+.....
T Consensus 96 ~~~i~l~~~-~e~~~~R~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~ev~~~I~~~~~~~~~ 169 (173)
T 3kb2_A 96 AKVVYLHAD-PSVIKKRLRVRGDEYIEGKDIDSILELYREVMSNAGLHTYSWDTGQWSSDEIAKDIIFLVELEHH 169 (173)
T ss_dssp EEEEEEECC-HHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHHTCSSCEEEEETTTSCHHHHHHHHHHHHHHGGG
T ss_pred CEEEEEeCC-HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHhCCCc
Confidence 356778765 9999999998754321 2223333332 22233334577888876 699999999999987543
No 52
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.00 E-value=1.4e-09 Score=104.71 Aligned_cols=155 Identities=16% Similarity=0.094 Sum_probs=82.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhc-cccC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHG-NFYG 204 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g-~~YG 204 (672)
+++.|+|+|+|||||||+++.|.+... + .|++.+.+........+.++....+ ..|.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~-~---------------------~~i~~d~~~~~~~g~~~~~~~~~~g~~~~~ 61 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK-R---------------------ILYDSDKEIEKRTGADIAWIFEMEGEAGFR 61 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC-C---------------------CEEEHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC-C---------------------CEEEChHHHHHHcCCChhhHHHHhCHHHHH
Confidence 467899999999999999999988741 1 1222233322222112222111111 1122
Q ss_pred cch-HHHHHHHhcCCeEEEEe-----eHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHH--HH---cCCCCHHHHHHHHHH
Q psy11425 205 TSF-FPIVREIKSNVDILLEI-----DFQGAKQIKKKFPNAIGIFILPPSLDSLKERL--YK---RGQDKYDVISRRILS 273 (672)
Q Consensus 205 t~~-~~I~~~l~~G~~vIldi-----~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL--~~---Rg~~~~e~i~~rl~~ 273 (672)
... ..+.........++..+ +......++.. ..+||+.+| ++++.+|+ .. |...+......++..
T Consensus 62 ~~~~~~~~~~~~~~~~vi~~gg~~~~~~~~~~~l~~~---~~vi~L~~~-~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~ 137 (185)
T 3trf_A 62 RREREMIEALCKLDNIILATGGGVVLDEKNRQQISET---GVVIYLTAS-IDTQLKRIGQKGEMRRPLFIKNNSKEKLQQ 137 (185)
T ss_dssp HHHHHHHHHHHHSSSCEEECCTTGGGSHHHHHHHHHH---EEEEEEECC-HHHHHHHHHCCTTCSSCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcEEecCCceecCHHHHHHHHhC---CcEEEEECC-HHHHHHHHhhcCCCCCCCCCCCCHHHHHHH
Confidence 111 12222333333333331 22222333332 367889876 99999999 33 332333333344444
Q ss_pred HHH--HhhhcCCCcEEEEcCC--HHHHHHHHHHHHHh
Q psy11425 274 ANK--EISYANKFDYIIINNK--FSKALLQLKAIINA 306 (672)
Q Consensus 274 ~~~--e~~~~~~~D~VI~Ndd--le~a~~qL~~iI~~ 306 (672)
... +..|...+|++|.|++ ++++.++|.+++..
T Consensus 138 ~~~~r~~~y~~~ad~~Idt~~~~~~e~~~~I~~~l~~ 174 (185)
T 3trf_A 138 LNEIRKPLYQAMADLVYPTDDLNPRQLATQILVDIKQ 174 (185)
T ss_dssp HHHHHHHHHHHHCSEEEECTTCCHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhcCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 222 2234455999999985 89999999887753
No 53
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.00 E-value=4.3e-10 Score=111.69 Aligned_cols=67 Identities=9% Similarity=0.015 Sum_probs=52.0
Q ss_pred cEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcCCCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 239 AIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 239 ~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~~~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
..+|||.+| ++++.+|+..|+..+.+.+..++..+.....+...+|++|.|+ +++++..+|.+++..
T Consensus 127 d~vi~l~~~-~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~ad~vId~~~~~~~~~~~I~~~l~~ 194 (218)
T 1vht_A 127 NRVLVVDVS-PETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPDAIASDVARLHAH 194 (218)
T ss_dssp SEEEEEECC-HHHHHHHHHHHHTCCHHHHHHHHHHSCCHHHHHHHCSEEEECSSCTTSHHHHHHHHHHH
T ss_pred CEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhcCChHHHHHhCCEEEECCCCHHHHHHHHHHHHHH
Confidence 367999975 9999999999866677777788776543334445689999998 699999999888864
No 54
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.00 E-value=6.7e-09 Score=99.18 Aligned_cols=159 Identities=15% Similarity=0.180 Sum_probs=86.6
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCC--CCCCcccccCCHHHHHHHHHcCCchhHHhHhccc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPG--EKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNF 202 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~--E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~ 202 (672)
+.+.+|+|+|+|||||||+++.|.... ++.+...+..+....- ...|..+ ...... .+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-g~~~i~~d~~~~~~~~~~~~~g~~~---~~~~~~---------~~~~----- 67 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-HAAFLDGDFLHPRRNIEKMASGEPL---NDDDRK---------PWLQ----- 67 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-TCEEEEGGGGCCHHHHHHHHTTCCC---CHHHHH---------HHHH-----
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-CcEEEeCccccchHHHHHhhcCcCC---Cccccc---------cHHH-----
Confidence 346799999999999999999998763 2222221111100000 0001111 000000 0000
Q ss_pred cCcchHHHHHHHhcCCeEEEEee---HHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh-
Q psy11425 203 YGTSFFPIVREIKSNVDILLEID---FQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEI- 278 (672)
Q Consensus 203 YGt~~~~I~~~l~~G~~vIldi~---~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~- 278 (672)
.....+...+..|..+|++.. ......++....+..+||+.+| ++++.+|+..|+..... ...+..+....
T Consensus 68 --~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~l~~~~~~~~vv~l~~~-~e~~~~R~~~R~~~~~~--~~~~~~~~~~~~ 142 (175)
T 1knq_A 68 --ALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGD-FDVIESRLKARKGHFFK--TQMLVTQFETLQ 142 (175)
T ss_dssp --HHHHHHHHHHHHCSEEEEECCCCSHHHHHHHHTTCTTEEEEEEECC-HHHHHHHHHTSTTCCCC--HHHHHHHHHHCC
T ss_pred --HHHHHHHHHHhcCCcEEEEeCchHHHHHHHHHhcCCCEEEEEEECC-HHHHHHHHHhccCCCCc--hHHHHHHHHhhh
Confidence 001122333455777888753 2232334433345578999976 99999999998743210 11222222222
Q ss_pred -h-hcCCCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 279 -S-YANKFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 279 -~-~~~~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
. |...+|++|.|+ +++++..+|.+++..
T Consensus 143 ~~~~~~~~~~~Id~~~~~~~~~~~i~~~l~~ 173 (175)
T 1knq_A 143 EPGADETDVLVVDIDQPLEGVVASTIEVIKK 173 (175)
T ss_dssp CCCTTCTTEEEEECSSCHHHHHHHHHHHHHC
T ss_pred CcccCCCCeEEEeCCCCHHHHHHHHHHHHhc
Confidence 1 445679999988 699999999888764
No 55
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.98 E-value=3.4e-10 Score=120.23 Aligned_cols=124 Identities=14% Similarity=0.077 Sum_probs=85.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCC---------CceeecccccccCCCCCCCCcccccCCHHHH-HHHHHcCCchhH
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDH---------KIKLSISTTTRPMRPGEKNGREYYFTNIDNF-KKLQKSGKFLEW 195 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~---------~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F-~~~i~~g~fle~ 195 (672)
++++|+|+||+|||||||+..|.+.++ .++...+.+|++|+..|..|..|||++...| ...+..+.|.++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~ 118 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSL 118 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHH
Confidence 457999999999999999999999874 2445567899999999999999999876665 333333445544
Q ss_pred HhHhccccCcchHHHHHHHhcCCeEEEEeeH-HHHHHHHH---------------------hCCCcEEEEEeCCCHHHHH
Q psy11425 196 AEVHGNFYGTSFFPIVREIKSNVDILLEIDF-QGAKQIKK---------------------KFPNAIGIFILPPSLDSLK 253 (672)
Q Consensus 196 ~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~-~g~~~l~~---------------------~~~~~~vIfI~~ps~e~l~ 253 (672)
. ...+..+...|+.+|+.+.. ..++.+.. ......++|...++.+++.
T Consensus 119 a----------~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~ 188 (339)
T 3a8t_A 119 A----------GKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLT 188 (339)
T ss_dssp H----------HHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHH
T ss_pred H----------HHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHH
Confidence 2 33455566678887777533 22222221 1122333444445699999
Q ss_pred HHHHHc
Q psy11425 254 ERLYKR 259 (672)
Q Consensus 254 ~RL~~R 259 (672)
+||..|
T Consensus 189 ~RI~~R 194 (339)
T 3a8t_A 189 DYLAKR 194 (339)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 999988
No 56
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.98 E-value=1.7e-09 Score=106.10 Aligned_cols=161 Identities=10% Similarity=0.074 Sum_probs=86.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGT 205 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt 205 (672)
.+.+|+|+||+||||||+++.|.... +..+...... . ..... .....+.......... .+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~-g~~~i~~d~~-------------~--~~~~~-~~~~~g~~~~~~~~~~-~~~~ 89 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET-GLEFAEADAF-------------H--SPENI-ATMQRGIPLTDEDRWP-WLRS 89 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH-CCEEEEGGGG-------------S--CHHHH-HHHHTTCCCCHHHHHH-HHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh-CCeEEccccc-------------c--cHHHH-HHHhcCCCCCCccccc-HHHH
Confidence 46799999999999999999998764 2222211111 0 00000 0111111111100000 0101
Q ss_pred chHHHHHHHhcCCeEEEEeeHH---HHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh--hh
Q psy11425 206 SFFPIVREIKSNVDILLEIDFQ---GAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEI--SY 280 (672)
Q Consensus 206 ~~~~I~~~l~~G~~vIldi~~~---g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~--~~ 280 (672)
....+...+..|..+|++.... ....++.......+||+.+| ++++.+|+..|+..... ...+..+..+. .|
T Consensus 90 ~~~~~~~~~~~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~-~e~l~~Rl~~R~~~~~~--~~~l~~~~~~~~~~~ 166 (200)
T 4eun_A 90 LAEWMDARADAGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGP-AEVIKGRMSKREGHFMP--ASLLQSQLATLEALE 166 (200)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECC-HHHHHHHHTTCSCCSSC--GGGHHHHHHHCCCCC
T ss_pred HHHHHHHHHhcCCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCC-HHHHHHHHHhcccCCCC--HHHHHHHHHHhCCCC
Confidence 1112233445677788886322 11222222234567888876 99999999988653211 11222222222 23
Q ss_pred cCCCcEEEEcC-CHHHHHHHHHHHHHhc
Q psy11425 281 ANKFDYIIINN-KFSKALLQLKAIINAN 307 (672)
Q Consensus 281 ~~~~D~VI~Nd-dle~a~~qL~~iI~~~ 307 (672)
...+|++|.|+ +++++.++|.+++...
T Consensus 167 ~~~~~~~Id~~~~~~e~~~~I~~~l~~~ 194 (200)
T 4eun_A 167 PDESGIVLDLRQPPEQLIERALTWLDIA 194 (200)
T ss_dssp TTSCEEEEETTSCHHHHHHHHHHHHCCC
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHHHhc
Confidence 44589999887 6999999999988653
No 57
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=3.1e-09 Score=104.21 Aligned_cols=156 Identities=13% Similarity=0.159 Sum_probs=84.6
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhc-ccc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHG-NFY 203 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g-~~Y 203 (672)
.++++|+|+|+|||||||+++.|.+... +.+ ++.+.+........+-++....+ ..|
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~-~~~---------------------i~~d~~~~~~~g~~i~~~~~~~~~~~~ 80 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLN-VPF---------------------IDLDWYIEERFHKTVGELFTERGEAGF 80 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHT-CCE---------------------EEHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC-CCE---------------------EcchHHHHHHhCCcHHHHHHhcChHHH
Confidence 3467999999999999999999988741 111 11122111111111111110111 011
Q ss_pred CcchHHHHHHHhcCCeEEEEee------HHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHH-Hc------CCCCHHHHHHH
Q psy11425 204 GTSFFPIVREIKSNVDILLEID------FQGAKQIKKKFPNAIGIFILPPSLDSLKERLY-KR------GQDKYDVISRR 270 (672)
Q Consensus 204 Gt~~~~I~~~l~~G~~vIldi~------~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~-~R------g~~~~e~i~~r 270 (672)
......+...+..+..+|++.. ......+.. ...+||+.+| ++++.+|+. .| ...+.+.+..+
T Consensus 81 ~~~e~~~l~~l~~~~~~vi~~ggg~~~~~~~~~~l~~---~~~vi~L~~~-~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~ 156 (199)
T 3vaa_A 81 RELERNMLHEVAEFENVVISTGGGAPCFYDNMEFMNR---TGKTVFLNVH-PDVLFRRLRIAKQQRPILQGKEDDELMDF 156 (199)
T ss_dssp HHHHHHHHHHHTTCSSEEEECCTTGGGSTTHHHHHHH---HSEEEEEECC-HHHHHHHHHHTGGGCGGGTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCcEEECCCcEEccHHHHHHHHc---CCEEEEEECC-HHHHHHHHhcCCCCCCCcCCCChhhHHHH
Confidence 1111112222334455566631 222233333 3467888876 999999998 33 13344555555
Q ss_pred HHHHHHH-hhhcCCCcEEEEcCC--HHHHHHHHHHHHHh
Q psy11425 271 ILSANKE-ISYANKFDYIIINNK--FSKALLQLKAIINA 306 (672)
Q Consensus 271 l~~~~~e-~~~~~~~D~VI~Ndd--le~a~~qL~~iI~~ 306 (672)
+.....+ ..+...+|++|.|++ ++++.++|.+.|..
T Consensus 157 i~~~~~~r~~~y~~ad~~Idt~~~s~ee~~~~I~~~l~~ 195 (199)
T 3vaa_A 157 IIQALEKRAPFYTQAQYIFNADELEDRWQIESSVQRLQE 195 (199)
T ss_dssp HHHHHHHHHHHHTTSSEEEECCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 6554332 222333999999884 89999999988865
No 58
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.97 E-value=2.9e-09 Score=102.47 Aligned_cols=158 Identities=12% Similarity=0.168 Sum_probs=81.5
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHH-HHH-HcCCchhHHhHhc----
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFK-KLQ-KSGKFLEWAEVHG---- 200 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~-~~i-~~g~fle~~~~~g---- 200 (672)
+.+|+|+|+|||||||+++.|.+.... .|.+|.|++...+- ... ..+.+..+.+...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~-----------------~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 65 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRK-----------------EGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPE 65 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT-----------------TTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-----------------cCcceEEEehHHHHHHHHhccCCCCCHHHHhcCCHH
Confidence 578999999999999999999886421 01222233322221 111 1111111111110
Q ss_pred --cccCcch-HHHHHHHhcCCeEEEEeeHH-----HH------HHHHHhCCCcEEEEEeCCCHHHHHH-HHHH--cCC--
Q psy11425 201 --NFYGTSF-FPIVREIKSNVDILLEIDFQ-----GA------KQIKKKFPNAIGIFILPPSLDSLKE-RLYK--RGQ-- 261 (672)
Q Consensus 201 --~~YGt~~-~~I~~~l~~G~~vIldi~~~-----g~------~~l~~~~~~~~vIfI~~ps~e~l~~-RL~~--Rg~-- 261 (672)
..+.... ..+... ..+..+|++..+. ++ ..++...++ .+||+.+| ++++.+ |+.. |++
T Consensus 66 ~~~~~~~~~~~~i~~~-~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~l~~~-~~~~~~rRl~~~~R~r~~ 142 (192)
T 1kht_A 66 TQKRIQKMAGRKIAEM-AKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPD-LIIVVETT-GDEILMRRMSDETRVRDL 142 (192)
T ss_dssp HHHHHHHHHHHHHHHH-HTTSCEEEECCSEEEETTEEEESSCHHHHHHHCCS-EEEEEECC-HHHHHHHHHTSSSCSSSC
T ss_pred HHHHHHHHHHHHHHhh-ccCCeEEEccceeccccccccccCcHHHHhccCCC-EEEEEeCC-HHHHHHHHhhhcccCCCc
Confidence 0011000 112222 2455678876321 11 223333445 47999987 777775 9977 654
Q ss_pred CCHHHHHHHHHHHHHH----hhhcCCCcEEEEcCC--HHHHHHHHHHHH
Q psy11425 262 DKYDVISRRILSANKE----ISYANKFDYIIINNK--FSKALLQLKAII 304 (672)
Q Consensus 262 ~~~e~i~~rl~~~~~e----~~~~~~~D~VI~Ndd--le~a~~qL~~iI 304 (672)
.+.+.+..+....... ..|.....++|.|.+ ++++.++|.++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~~i~~~i 191 (192)
T 1kht_A 143 DTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVL 191 (192)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 3444443332222111 123344556677877 999999998876
No 59
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.97 E-value=1.6e-09 Score=104.34 Aligned_cols=161 Identities=17% Similarity=0.198 Sum_probs=86.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGT 205 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt 205 (672)
++.+|+|+|++||||||+++.|.+.....++......|..-++ |..+ ...+...+..|.+.....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~---~~~~----~~~i~~~~~~g~~~~~~~-------- 67 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVAR---GTPL----GERVRPIMERGDLVPDDL-------- 67 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHT---TCHH----HHHHHHHHHTTCCCCHHH--------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHc---CChH----HHHHHHHHHcCCcCCHHH--------
Confidence 4678999999999999999999876421122222222221000 1100 112222233333222111
Q ss_pred chHHHHHHHhcCCeEEEEeeHHHHHH-------HHHhCC-CcEEEEEeCCCHHHHHHHHHHcC----C--CCHHHHHHHH
Q psy11425 206 SFFPIVREIKSNVDILLEIDFQGAKQ-------IKKKFP-NAIGIFILPPSLDSLKERLYKRG----Q--DKYDVISRRI 271 (672)
Q Consensus 206 ~~~~I~~~l~~G~~vIldi~~~g~~~-------l~~~~~-~~~vIfI~~ps~e~l~~RL~~Rg----~--~~~e~i~~rl 271 (672)
....+...+..+ +|++..+....+ +..... ...+||+.+| ++++.+|+..|+ + .+.+.+.+|+
T Consensus 68 ~~~~~~~~l~~~--~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~r~~~~~~~~~~r~ 144 (186)
T 3cm0_A 68 ILELIREELAER--VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVP-EEELVRRILRRAELEGRSDDNEETVRRRL 144 (186)
T ss_dssp HHHHHHHHCCSE--EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECC-HHHHHHHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred HHHHHHHHhcCC--EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhccccCCCCCCCHHHHHHHH
Confidence 111223333333 777754433211 122111 2356888876 999999998873 2 4567777777
Q ss_pred HHHHHH----h-hhcC-CCcEEEEcC-CHHHHHHHHHHHH
Q psy11425 272 LSANKE----I-SYAN-KFDYIIINN-KFSKALLQLKAII 304 (672)
Q Consensus 272 ~~~~~e----~-~~~~-~~D~VI~Nd-dle~a~~qL~~iI 304 (672)
..+... . .|.. ..+++|.|+ +++++.++|.+++
T Consensus 145 ~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l 184 (186)
T 3cm0_A 145 EVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAAL 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHh
Confidence 765433 1 2221 125677765 6999999998876
No 60
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.97 E-value=6.4e-10 Score=109.41 Aligned_cols=170 Identities=11% Similarity=0.102 Sum_probs=85.8
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcC-CchhHHh---Hhcc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSG-KFLEWAE---VHGN 201 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g-~fle~~~---~~g~ 201 (672)
++++|+|+|++||||||+++.|.+.+...++.+ ..++.+..+..-| +.+...+..+ .|-.+.. +...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v-~~~~~~~~~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~ 78 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRA-ELLRFPERSTEIG--------KLLSSYLQKKSDVEDHSVHLLFSAN 78 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESSCTTSHHH--------HHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE-EEeeCCCCCCcHH--------HHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999998642112222 2333332111001 1111111111 1111100 0011
Q ss_pred ccCcchHHHHHHHhcCCeEEEEeeH---------------HHHHHHHHhC-CCcEEEEEeCCCHHHHHHHHHHcC-CCCH
Q psy11425 202 FYGTSFFPIVREIKSNVDILLEIDF---------------QGAKQIKKKF-PNAIGIFILPPSLDSLKERLYKRG-QDKY 264 (672)
Q Consensus 202 ~YGt~~~~I~~~l~~G~~vIldi~~---------------~g~~~l~~~~-~~~~vIfI~~ps~e~l~~RL~~Rg-~~~~ 264 (672)
.+.. ...+...+..|..+|+|-.. +.+..+.... ....+||+.+| ++++.+|+..|. ....
T Consensus 79 r~~~-~~~i~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~-~e~~~~Rl~r~~~~~~~ 156 (215)
T 1nn5_A 79 RWEQ-VPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQ-LADAAKRGAFGHERYEN 156 (215)
T ss_dssp HHTT-HHHHHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECC-HHHHHHC-----CTTCS
T ss_pred HHHH-HHHHHHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHhccCccccch
Confidence 1222 13455666788888888321 1111111111 12457888876 899999997542 2222
Q ss_pred HHHHHHHHHHHHHhhhcCCCc-EEEEcC-CHHHHHHHHHHHHHh
Q psy11425 265 DVISRRILSANKEISYANKFD-YIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 265 e~i~~rl~~~~~e~~~~~~~D-~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
.....++..+..+.......+ ++|.|+ +++++.++|.+++..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~ 200 (215)
T 1nn5_A 157 GAFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSED 200 (215)
T ss_dssp HHHHHHHHHHHHHHTTCTTSCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 344555555444332222345 556555 599999999988865
No 61
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.96 E-value=5.3e-09 Score=104.46 Aligned_cols=171 Identities=13% Similarity=0.093 Sum_probs=97.6
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCC---chhHHh---H
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGK---FLEWAE---V 198 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~---fle~~~---~ 198 (672)
+++.+|+|.|++||||||+++.|.+.....++.+ .+||.|...+ + -+.+...+.++. +-.+.+ |
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v-~~~~~p~~~~-----~----g~~i~~~l~~~~~~~~~~~~~~llf 73 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEV-QLTREPGGTP-----L----AERIRELLLAPSDEPMAADTELLLM 73 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE-EEEESSCSSH-----H----HHHHHHHHHSCCSSCCCHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCH-----H----HHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 4578999999999999999999988754333334 4667663221 1 133445555442 222222 2
Q ss_pred hccccCcchHHHHHHHhcCCeEEEEe---------------eHHHHHHHHHh---CCC-cEEEEEeCCCHHHHHHHHHHc
Q psy11425 199 HGNFYGTSFFPIVREIKSNVDILLEI---------------DFQGAKQIKKK---FPN-AIGIFILPPSLDSLKERLYKR 259 (672)
Q Consensus 199 ~g~~YGt~~~~I~~~l~~G~~vIldi---------------~~~g~~~l~~~---~~~-~~vIfI~~ps~e~l~~RL~~R 259 (672)
....+......|...+++|.+||+|= +...+..+... .+. ..+||++.| +++..+|+..|
T Consensus 74 ~a~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~-~e~~~~Ri~~R 152 (213)
T 4edh_A 74 FAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLP-VEIGLARAAAR 152 (213)
T ss_dssp HHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhc
Confidence 22222222334566778899999982 12222333321 232 346888876 99999999988
Q ss_pred CC-CCH----HHHHHHHHHHHHHh-hhcCCCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 260 GQ-DKY----DVISRRILSANKEI-SYANKFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 260 g~-~~~----e~i~~rl~~~~~e~-~~~~~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
+. +.. .+..+++.....++ ......-++|.++ ++++..++|.++|..
T Consensus 153 ~~~dr~E~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eeV~~~I~~~l~~ 206 (213)
T 4edh_A 153 GRLDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPN 206 (213)
T ss_dssp SSCCTTTTSCHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred CCcCcccccHHHHHHHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHHH
Confidence 53 111 23344444433333 1112223455544 599999999888864
No 62
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.92 E-value=9e-09 Score=100.72 Aligned_cols=164 Identities=13% Similarity=0.051 Sum_probs=88.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcC----CchhHHh---H
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSG----KFLEWAE---V 198 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g----~fle~~~---~ 198 (672)
++++|+|+|+|||||||+++.|.+.+...+ .+ ..++.| .|. .+...+..+ .+-.+.. +
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~-~~~~~~-----~~~--------~i~~~~~~~~~~~~~~~~~~~~~~ 67 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR-DV-YLTEWN-----SSD--------WIHDIIKEAKKKDLLTPLTFSLIH 67 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CE-EEEETT-----CCC--------HHHHHHHHHTTTSCCCHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CE-EEecCC-----cHH--------HHHHHHhccccccCCCHHHHHHHH
Confidence 467999999999999999999998753211 11 122222 111 111111111 1111100 0
Q ss_pred hccccCcchHHHHHHHhcCCeEEEEeeHHH--------------HHHHHHhCC-CcEEEEEeCCCHHHHHHHHH-HcCC-
Q psy11425 199 HGNFYGTSFFPIVREIKSNVDILLEIDFQG--------------AKQIKKKFP-NAIGIFILPPSLDSLKERLY-KRGQ- 261 (672)
Q Consensus 199 ~g~~YGt~~~~I~~~l~~G~~vIldi~~~g--------------~~~l~~~~~-~~~vIfI~~ps~e~l~~RL~-~Rg~- 261 (672)
....+......+...+..|..+|+|..+.. +..+..... ...+||+.+| ++++.+|+. .|+.
T Consensus 68 ~~~r~~~~~~~i~~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~-~e~~~~Rl~~~R~~~ 146 (213)
T 2plr_A 68 ATDFSDRYERYILPMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVS-PDIALERIKKSKRKI 146 (213)
T ss_dssp HHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECC-HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHhcccccc
Confidence 001111111233455667888999975432 222322222 2356888876 899999999 7863
Q ss_pred CC-------------H---HHHHHHHHHHHHHhhhcCCCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 262 DK-------------Y---DVISRRILSANKEISYANKFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 262 ~~-------------~---e~i~~rl~~~~~e~~~~~~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
.. . +.+..++..+..+... ...+++|.|+ +++++.++|.++|..
T Consensus 147 ~~~~~g~~~~~~~d~~e~~~~~~~r~~~~~~~~~~-~~~~~~Id~~~~~e~v~~~I~~~l~~ 207 (213)
T 2plr_A 147 KPQEAGADIFPGLSPEEGFLKYQGLITEVYDKLVK-DENFIVIDGTKTPKEIQIQIRKFVGE 207 (213)
T ss_dssp CTTTTTTTTCTTSCHHHHHHHHHHHHHHHHHHHTT-TTTCEEEETTSCHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhhhHHHHHHHHHHHHHHHHh-hCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 11 1 2344444443333221 1245777766 599999999988864
No 63
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.91 E-value=1.5e-09 Score=104.62 Aligned_cols=163 Identities=17% Similarity=0.108 Sum_probs=80.7
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCCCceeeccccc--ccCCCCCCCCcccccCCHHHHHHHHHc--CCchhHHhHhcccc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTT--RPMRPGEKNGREYYFTNIDNFKKLQKS--GKFLEWAEVHGNFY 203 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TT--R~~r~~E~~G~dY~fvs~~~F~~~i~~--g~fle~~~~~g~~Y 203 (672)
++|+|+|+|||||||+++.|.+.+...++.+.++. ...+ +.-+..+.+.....|...... ..++.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 72 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFML--ATALKLGYAKDRDEMRKLSVEKQKKLQIDA------- 72 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHH--HHHHTTTSCSSHHHHTTSCHHHHHHHHHHH-------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHH--HHHHhcccccchhhhhcCCHHHHHHHHHHH-------
Confidence 58999999999999999999887532111111211 0000 000011222222222211000 0111110
Q ss_pred CcchHHHHHHH--hcCCeEEEEee----HH-H------HHHHHHhCCCcEEEEEeCCCHHHHH-HHHHH--cCC-C--CH
Q psy11425 204 GTSFFPIVREI--KSNVDILLEID----FQ-G------AKQIKKKFPNAIGIFILPPSLDSLK-ERLYK--RGQ-D--KY 264 (672)
Q Consensus 204 Gt~~~~I~~~l--~~G~~vIldi~----~~-g------~~~l~~~~~~~~vIfI~~ps~e~l~-~RL~~--Rg~-~--~~ 264 (672)
...+...+ ..|..||+|.. ++ + ...++...+ ..+||+.+| ++++. +|+.. |+. . +.
T Consensus 73 ---~~~i~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~vi~l~~~-~~~~~~rr~~~~~R~~~~~~~~ 147 (194)
T 1nks_A 73 ---AKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINP-SVIFLLEAD-PKIILSRQKRDTTRNRNDYSDE 147 (194)
T ss_dssp ---HHHHHHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHHCC-SEEEEEECC-HHHHHHHHHHCTTTCCCCCCSH
T ss_pred ---HHHHHHHhhccCCCEEEECCchhhccccccccCCCHHHHHhcCC-CEEEEEeCC-HHHHHHHHHhhcccCCCCccCH
Confidence 11244555 67888999952 11 1 223333333 456888887 55655 55877 765 2 33
Q ss_pred HHHH--HHHHHHHHHh-hhcCCCcEEEE-cCC--HHHHHHHHHHHH
Q psy11425 265 DVIS--RRILSANKEI-SYANKFDYIII-NNK--FSKALLQLKAII 304 (672)
Q Consensus 265 e~i~--~rl~~~~~e~-~~~~~~D~VI~-Ndd--le~a~~qL~~iI 304 (672)
+.+. .++.....+. ......+++++ |++ +++++++|.++|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~d~~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 148 SVILETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM 193 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 4332 2333332222 11112455555 664 999999998776
No 64
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.90 E-value=1.8e-09 Score=105.13 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=50.2
Q ss_pred cEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcCCCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 239 AIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 239 ~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~~~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
..+|||.+| ++++.+|+..|...+.+.+..++..+.....+...+|++|.|+ +++++.++|.+++..
T Consensus 126 d~~i~l~~~-~e~~~~R~~~R~~~~~~~~~~~i~~~~~~~~~~~~ad~vId~~~~~~~~~~~i~~~~~~ 193 (203)
T 1uf9_A 126 HGTLLVAAP-LEERVRRVMARSGLSREEVLARERAQMPEEEKRKRATWVLENTGSLEDLERALKAVLAE 193 (203)
T ss_dssp SEEEEECCC-HHHHHHHHHTTTCCTTHHHHHHHTTSCCHHHHHHHCSEEECCSSHHHHHHHHHHHHHHS
T ss_pred CEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHHCCChhHHHHhCCEEEECCCCHHHHHHHHHHHHHH
Confidence 467999876 9999999999865555666777766433333345689998887 489999999998864
No 65
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.89 E-value=1.7e-09 Score=109.20 Aligned_cols=170 Identities=11% Similarity=0.019 Sum_probs=99.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCc----eeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHh---H
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKI----KLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAE---V 198 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~----~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~---~ 198 (672)
++++|+|.|++||||||+++.|.+..... ++.+ .+||.|+.++ .-+.+.+.+.++.+..+.+ +
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v-~~~rep~~t~---------~g~~ir~~l~~~~~~~~~~~llf 93 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHV-VVTREPGGTR---------LGETLREILLNQPMDLETEALLM 93 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCE-EEEESSSSSH---------HHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceee-eeecCCCCCh---------HHHHHHHHHHcCCCCHHHHHHHH
Confidence 57899999999999999999998876322 3333 4677774321 1234666666665433332 4
Q ss_pred hccccCcchHHHHHHHhcCCeEEEEe---------------eHHHHHHHHHh---CCC-cEEEEEeCCCHHHHHHHHHHc
Q psy11425 199 HGNFYGTSFFPIVREIKSNVDILLEI---------------DFQGAKQIKKK---FPN-AIGIFILPPSLDSLKERLYKR 259 (672)
Q Consensus 199 ~g~~YGt~~~~I~~~l~~G~~vIldi---------------~~~g~~~l~~~---~~~-~~vIfI~~ps~e~l~~RL~~R 259 (672)
..+.|......|...+++|.+||+|= +.+.+..+... .+. ..+||++.| +++..+|+..|
T Consensus 94 ~a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~-~e~~~~Ri~~R 172 (227)
T 3v9p_A 94 FAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVP-PQIASARRGAV 172 (227)
T ss_dssp HHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-SSCGGGTTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhc
Confidence 44455544556777788999999992 12222333322 232 346888876 88999999988
Q ss_pred CCC----C-HHHHHHHHHHHHHHhh-hcCCCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 260 GQD----K-YDVISRRILSANKEIS-YANKFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 260 g~~----~-~e~i~~rl~~~~~e~~-~~~~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
+.. . ..+..+++......+. .....-.+|..+ ++++..++|.++|+.
T Consensus 173 ~~~dr~E~~~~ef~~rv~~~Y~~la~~~~~~~~vIDa~~s~eeV~~~I~~~l~~ 226 (227)
T 3v9p_A 173 RMPDKFESESDAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLEGVLAA 226 (227)
T ss_dssp CCC---CCHHHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred cCccchhhhhHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 621 1 1233344443333321 111223445444 599999999988864
No 66
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.89 E-value=4.3e-09 Score=105.44 Aligned_cols=171 Identities=18% Similarity=0.224 Sum_probs=100.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYG 204 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YG 204 (672)
.++++|+|+|||||||+|+++.|.+.+.-.+.+....-|..-.. +.. .-......+..|.++...-. ..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~---~t~----lg~~~~~~~~~G~lVpde~~----~~ 95 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQS---GSP----KGKELKAMMERGELVPLEVV----LA 95 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTT---CCH----HHHHHHHHHHHTCCCCHHHH----HH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHc---CCc----hHHHHHHHHhcCCCCCHHHH----HH
Confidence 35789999999999999999999998633333332222221100 000 01223344455555432111 11
Q ss_pred cchHHHHHHHhcCCeEEEEeeHHHHHH---HHHhCC-CcEEEEEeCCCHHHHHHHHHHcC------CCCHHHHHHHHHHH
Q psy11425 205 TSFFPIVREIKSNVDILLEIDFQGAKQ---IKKKFP-NAIGIFILPPSLDSLKERLYKRG------QDKYDVISRRILSA 274 (672)
Q Consensus 205 t~~~~I~~~l~~G~~vIldi~~~g~~~---l~~~~~-~~~vIfI~~ps~e~l~~RL~~Rg------~~~~e~i~~rl~~~ 274 (672)
...+.+......+...|+|+-|..+.+ +.+... -..+|++.+| .+++.+|+..|. +++++.+.+|+..+
T Consensus 96 lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~-~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y 174 (217)
T 3umf_A 96 LLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVS-EEVMRKRLLKRAETSNRVDDNEETIVKRFRTF 174 (217)
T ss_dssp HHHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHSCC------CHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCC-HHHHHHHHhcccccCCCCCCCHHHHHHHHHHH
Confidence 111222222234556899986655544 333333 3467888876 999999998774 23467789998876
Q ss_pred HHH----hh-hcCCCcEEEEcC--CHHHHHHHHHHHHHhc
Q psy11425 275 NKE----IS-YANKFDYIIINN--KFSKALLQLKAIINAN 307 (672)
Q Consensus 275 ~~e----~~-~~~~~D~VI~Nd--dle~a~~qL~~iI~~~ 307 (672)
..+ .. |.+...++.+|. ++++.+.+|.++|++.
T Consensus 175 ~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k~ 214 (217)
T 3umf_A 175 NELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQKF 214 (217)
T ss_dssp HHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 543 23 334444555554 5999999999999763
No 67
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.89 E-value=6.2e-09 Score=100.82 Aligned_cols=157 Identities=11% Similarity=0.078 Sum_probs=80.8
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCcee-ecccccccCCCCCCCCcc--cccCCHHHHHHHHHcCCchhHHhHhcc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKL-SISTTTRPMRPGEKNGRE--YYFTNIDNFKKLQKSGKFLEWAEVHGN 201 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~-~v~~TTR~~r~~E~~G~d--Y~fvs~~~F~~~i~~g~fle~~~~~g~ 201 (672)
+.+++|+|+|++||||||+++.|.+...++.+ ......+.....+..+.. .+|.++. .+..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~~~~~~~~~~~~~~~r~-----------~~~~----- 71 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEK-----------DEDR----- 71 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC------CCCCCHH-----------HHHH-----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhhhhhHHHHhhhcccCCC-----------CHHH-----
Confidence 45678999999999999999999988223322 222333332111111110 0111000 0000
Q ss_pred ccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH------
Q psy11425 202 FYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSAN------ 275 (672)
Q Consensus 202 ~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~------ 275 (672)
....+...+..+..++++..... .+.... ...+||+.+| ++++.+|+..|+.. ...+..++..+.
T Consensus 72 ----~~~~l~~~~~~~g~~vi~~~~~~--~~~~~~-~~~vi~l~~~-~e~~~~Rl~~R~~~-~~~~~~~~~~q~~~~l~~ 142 (184)
T 1y63_A 72 ----LLDFMEPIMVSRGNHVVDYHSSE--LFPERW-FHMVVVLHTS-TEVLFERLTKRQYS-EAKRAENMEAEIQCICEE 142 (184)
T ss_dssp ----HHHHHHHHHTSSSEEEEECSCCT--TSCGGG-CSEEEEEECC-HHHHHHHHHHTTCC-HHHHHHHHHHHHTTHHHH
T ss_pred ----HHHHHHHHHhccCCEEEeCchHh--hhhhcc-CCEEEEEECC-HHHHHHHHHhCCCC-hhhhHhhHHHHHHHHHHH
Confidence 01122334423334455543211 111111 2367888876 99999999999643 444444543331
Q ss_pred HHhhhcCCCcEEEE-cC-CHHHHHHHHHHHHHhc
Q psy11425 276 KEISYANKFDYIII-NN-KFSKALLQLKAIINAN 307 (672)
Q Consensus 276 ~e~~~~~~~D~VI~-Nd-dle~a~~qL~~iI~~~ 307 (672)
....... .|++|. |+ +++++..++..++...
T Consensus 143 ~~~~~y~-~~~vi~~n~~~~~~~~~~v~~i~~~l 175 (184)
T 1y63_A 143 EARDAYE-DDIVLVRENDTLEQMAATVEEIRERV 175 (184)
T ss_dssp HHHHHSC-GGGEEEEECSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhc-cCcEEECCCCCHHHHHHHHHHHHHHH
Confidence 1112222 477776 65 6999977777776543
No 68
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.87 E-value=9e-10 Score=109.74 Aligned_cols=167 Identities=16% Similarity=0.149 Sum_probs=86.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeeccccccc-CCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRP-MRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYG 204 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~-~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YG 204 (672)
++.+|+|+|+|||||||+++.|.+.+...++...+++|. .+.+...|.. ....+..|.++........
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~--------i~~~~~~g~~~~~~~~~~~--- 72 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKR--------AKEFMEKGQLVPDEIVVNM--- 72 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHH--------HHHHHHTTCCCCHHHHHHH---
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHH--------HHHHHHcCCcCCHHHHHHH---
Confidence 346899999999999999999988754333343344443 1222111211 1111222222111000000
Q ss_pred cchHHH-HHHHhcCCeEEEEeeHHHH---HHHHHhCC-CcEEEEEeCCCHHHHHHHHHHcC-------------------
Q psy11425 205 TSFFPI-VREIKSNVDILLEIDFQGA---KQIKKKFP-NAIGIFILPPSLDSLKERLYKRG------------------- 260 (672)
Q Consensus 205 t~~~~I-~~~l~~G~~vIldi~~~g~---~~l~~~~~-~~~vIfI~~ps~e~l~~RL~~Rg------------------- 260 (672)
....+ ......+. +|+++.+... ..+..... ...+||++++ ++++.+|+..|.
T Consensus 73 -~~~~~~~~~~~~~~-~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~-~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~ 149 (222)
T 1zak_A 73 -VKERLRQPDAQENG-WLLDGYPRSYSQAMALETLEIRPDTFILLDVP-DELLVERVVGRRLDPVTGKIYHLKYSPPENE 149 (222)
T ss_dssp -HHHHHHSHHHHHTC-EEEESCCCSHHHHHHHHTTTCCCSEEEEEECC-HHHHHHHHTTEEECTTTCCEEESSSSCCCSS
T ss_pred -HHHHHhhccccCCc-EEEECCCCCHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHcCCcccccCCccccccCCCccc
Confidence 00000 01112233 4457633332 23333222 2356888876 888888887653
Q ss_pred ----------CCCHHHHHHHHHHHHHHh----hhcCCCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 261 ----------QDKYDVISRRILSANKEI----SYANKFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 261 ----------~~~~e~i~~rl~~~~~e~----~~~~~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
.+..+.+..|+.....+. .+.....++|.++ ++++++++|.++|..
T Consensus 150 ~~~~~l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~~~~~Id~~~~~~ev~~~I~~~l~~ 210 (222)
T 1zak_A 150 EIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDELLGS 210 (222)
T ss_dssp GGGGGCBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCCCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcEEEEECCCCHHHHHHHHHHHHHh
Confidence 234566787877655432 2222334556554 599999999998864
No 69
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.86 E-value=3.5e-10 Score=111.38 Aligned_cols=160 Identities=15% Similarity=0.067 Sum_probs=70.2
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhcC----CCceeecccccccC-----CCCCCCCccccc--CCHHHHHHHH----
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKKD----HKIKLSISTTTRPM-----RPGEKNGREYYF--TNIDNFKKLQ---- 187 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~~----~~~~~~v~~TTR~~-----r~~E~~G~dY~f--vs~~~F~~~i---- 187 (672)
.+..+.+|+|+|++||||||+++.|.... ..+.+.-......+ ..+...|..|++ .+.+.|.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l 97 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQL 97 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGT
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHH
Confidence 34567899999999999999999998753 11222111111111 112222222221 3555555443
Q ss_pred HcCCchhHHhHhccccCcchHHHHHHHhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHH
Q psy11425 188 KSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVI 267 (672)
Q Consensus 188 ~~g~fle~~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i 267 (672)
..+..+.+..|... ++..... ......+.++|+++.+.....+.. . ...+|||.+| .+++.+|+..|+ +++
T Consensus 98 ~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~vIveg~~l~~~~~~~-~-~d~~i~v~~~-~~~~~~R~~~R~----~~~ 168 (201)
T 1rz3_A 98 KASHQLTLPFYDHE-TDTHSKR-TVYLSDSDMIMIEGVFLQRKEWRP-F-FDFVVYLDCP-REIRFARENDQV----KQN 168 (201)
T ss_dssp TTCSEEEEEEEETT-TTEEEEE-EEECTTCSEEEEEETTTTSTTTGG-G-CSEEEEECCC-------------------C
T ss_pred hcCCccccCceecc-CCCCCCc-eEEeCCCcEEEEechhhccHHHHh-h-cCEEEEEeCC-HHHHHHHHhcCC----HHH
Confidence 12222222112111 2211100 011234678889886533222211 2 2467999987 789999999987 334
Q ss_pred HHHH-HHHHH-------HhhhcCCCcEEEEcC
Q psy11425 268 SRRI-LSANK-------EISYANKFDYIIINN 291 (672)
Q Consensus 268 ~~rl-~~~~~-------e~~~~~~~D~VI~Nd 291 (672)
..++ .++.. .......+|+||.|+
T Consensus 169 ~~~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 169 IQKFINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred HHHHHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 4555 33332 122245799999886
No 70
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.85 E-value=1.5e-09 Score=106.44 Aligned_cols=66 Identities=24% Similarity=0.264 Sum_probs=51.7
Q ss_pred cEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhcCCCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 239 AIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 239 ~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~e~~~~~~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
..+||+.+| ++++.+|+..|+ .+.+.+..++..+.....+...+|++|.|+ +++++..+|.+++..
T Consensus 125 ~~~i~l~~~-~e~~~~Rl~~R~-~~~~~~~~~~~~~~~~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~ 191 (204)
T 2if2_A 125 DKLIVVYAP-YEVCKERAIKRG-MSEEDFERRWKKQMPIEEKVKYADYVIDNSGSIEETYKQVKKVYEE 191 (204)
T ss_dssp SEEEEECCC-HHHHHHHHHHTC-CCHHHHHHHHTTSCCHHHHGGGCSEECCCSSCHHHHHHHHHHHHHT
T ss_pred CEEEEEECC-HHHHHHHHHHcC-CCHHHHHHHHHhCCChhHHHhcCCEEEECCCCHHHHHHHHHHHHHH
Confidence 367888876 999999999995 566677777766544445556789999888 699999999998864
No 71
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.85 E-value=2.4e-08 Score=95.67 Aligned_cols=151 Identities=13% Similarity=0.104 Sum_probs=76.6
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHH----cC--CchhHHhH
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQK----SG--KFLEWAEV 198 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~----~g--~fle~~~~ 198 (672)
+++.+|+|+|++||||||+++.|.+... +.+... . +.+...+. .+ .|......
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~-~~~i~d-~-------------------~~~g~~i~~~~~~g~~~~~~~~~~ 61 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLP-GSFVFE-P-------------------EEMGQALRKLTPGFSGDPQEHPMW 61 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHST-TCEECC-T-------------------HHHHHHHHHTSTTCCSCGGGSTTH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC-CCEEEc-h-------------------hhhHHHHHHhCccccchhhhhHHH
Confidence 4567999999999999999999987742 111110 0 01111110 00 01100000
Q ss_pred hccccCcchHHHHHHHhc-CCeEEEEeeH-------HHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCC--CCHHHHH
Q psy11425 199 HGNFYGTSFFPIVREIKS-NVDILLEIDF-------QGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQ--DKYDVIS 268 (672)
Q Consensus 199 ~g~~YGt~~~~I~~~l~~-G~~vIldi~~-------~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~--~~~e~i~ 268 (672)
.. .....+...++. |..+|++..+ .....++........||+.+| ++++.+|+..|+. ...+.+.
T Consensus 62 ~~----~~~~~i~~~l~~~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~-~e~~~~R~~~R~~r~~~~~~~~ 136 (183)
T 2vli_A 62 IP----LMLDALQYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAP-LNVVLERLRRDGQPQVNVGTVE 136 (183)
T ss_dssp HH----HHHHHHHHHHHHCSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECC-HHHHHHHHHTC----CCHHHHH
T ss_pred HH----HHHHHHHHHHHhCCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCC-HHHHHHHHHhccccchhHHHHH
Confidence 00 011233445555 7778888643 122233333334455888876 9999999998863 2233333
Q ss_pred HHHHHHHHHhhhcCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 269 RRILSANKEISYANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 269 ~rl~~~~~e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
..+... ..+ .+.+ +|.|+ +++++.++|.+++..
T Consensus 137 ~~~~~~---~~~-~~~~-~Id~~~~~~~~~~~~I~~~l~~ 171 (183)
T 2vli_A 137 DRLNEL---RGE-QFQT-HIDTAGLGTQQVAEQIAAQVGL 171 (183)
T ss_dssp HHHHHH---TSG-GGCS-EEECTTCCHHHHHHHHHHHHTC
T ss_pred HHHHhh---ccc-ccce-EeeCCCCCHHHHHHHHHHHHHH
Confidence 222211 112 2345 88876 599999999998864
No 72
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.84 E-value=1e-08 Score=100.81 Aligned_cols=164 Identities=12% Similarity=0.007 Sum_probs=83.5
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc-CCCceeecccc---ccc--CCCCCCCCcccc---cCCHHHHHHHHHcCC-chh
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK-DHKIKLSISTT---TRP--MRPGEKNGREYY---FTNIDNFKKLQKSGK-FLE 194 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~-~~~~~~~v~~T---TR~--~r~~E~~G~dY~---fvs~~~F~~~i~~g~-fle 194 (672)
.-..+|+|+|++||||||+++.|.+. +..+....... ..+ ++-.+..|.++. -+++..+.+.+..+. -..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~~ 89 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENLK 89 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHHH
Confidence 34579999999999999999999988 42222211110 000 000001122211 123333333221110 000
Q ss_pred HHhHhccccCcchHHHHHHHhc-CCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy11425 195 WAEVHGNFYGTSFFPIVREIKS-NVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILS 273 (672)
Q Consensus 195 ~~~~~g~~YGt~~~~I~~~l~~-G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~ 273 (672)
+. +..........+...+.. +..+++++- .+.+.........+|||.+| ++++.+|+ +.+
T Consensus 90 ~l--~~i~hP~i~~~~~~~~~~~~~~vv~d~p--ll~e~~~~~~~d~vi~v~a~-~e~r~~Rl--------------i~~ 150 (192)
T 2grj_A 90 KL--ELLVHPLMKKRVQEIINKTSGLIVIEAA--LLKRMGLDQLCDHVITVVAS-RETILKRN--------------REA 150 (192)
T ss_dssp HH--HHHHHHHHHHHHHHHHHTCCEEEEEECT--TTTTTTGGGGCSEEEEEECC-HHHHHHHC--------------SSH
T ss_pred HH--HhhhCHHHHHHHHHHHHHcCCEEEEEEe--ceeecChHHhCCEEEEEECC-HHHHHHHH--------------HHh
Confidence 10 000000001122222333 556777642 11111111123457999987 88988888 223
Q ss_pred HHHH--hhhcCCCcEEEEcC-CHHHHHHHHHHHHHhc
Q psy11425 274 ANKE--ISYANKFDYIIINN-KFSKALLQLKAIINAN 307 (672)
Q Consensus 274 ~~~e--~~~~~~~D~VI~Nd-dle~a~~qL~~iI~~~ 307 (672)
+... ..+...+|+||.|+ +++++..++.++++..
T Consensus 151 q~~~~~~~~~~~AD~vI~n~~~~~~l~~~v~~~~~~l 187 (192)
T 2grj_A 151 DRRLKFQEDIVPQGIVVANNSTLEDLEKKVEEVMKLV 187 (192)
T ss_dssp HHHHTTCTTCCCCSEEEECSSCHHHHHHHHHHHHHHH
T ss_pred cCCchhhhHHhcCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 3444 34567899999998 6999999999988653
No 73
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.81 E-value=1.3e-08 Score=101.01 Aligned_cols=162 Identities=22% Similarity=0.219 Sum_probs=96.3
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchH
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFF 208 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~ 208 (672)
+|+|.|||||||+|+++.|.+.+.-.+.+....-|..-.. +.. .-......+..|.++... +...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~---~t~----lg~~~~~~~~~G~lvpd~--------iv~~ 66 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQK---GTP----LGKKAKEYMERGELVPDD--------LIIA 66 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH---TCH----HHHHHHHHHHHTCCCCHH--------HHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHh---cCh----hhhhHHHHHhcCCcCCHH--------HHHH
Confidence 6889999999999999999998633333332222211000 000 011222334445444321 1122
Q ss_pred HHHHHHhcCCeEEEEeeHHHHHHHH-------HhCC-CcEEEEEeCCCHHHHHHHHHHcC--------------------
Q psy11425 209 PIVREIKSNVDILLEIDFQGAKQIK-------KKFP-NAIGIFILPPSLDSLKERLYKRG-------------------- 260 (672)
Q Consensus 209 ~I~~~l~~G~~vIldi~~~g~~~l~-------~~~~-~~~vIfI~~ps~e~l~~RL~~Rg-------------------- 260 (672)
-+...+.+....|+|+-|..+.+.. .... -..+|++.+| .+++.+|+..|.
T Consensus 67 lv~~~l~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~-~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~ 145 (206)
T 3sr0_A 67 LIEEVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVP-DEVVIERLSGRRINPETGEVYHVKYNPPPPGV 145 (206)
T ss_dssp HHHHHCCSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTEEECTTTCCEEETTTBCCCTTC
T ss_pred HHHHhhccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCC-HHHHHHHHhCCccccCCCceeeeeccCCCCCc
Confidence 3334444555688998765544332 2222 2356888876 899999999762
Q ss_pred ------CCCHHHHHHHHHHHHHHh----h-hcCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 261 ------QDKYDVISRRILSANKEI----S-YANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 261 ------~~~~e~i~~rl~~~~~e~----~-~~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
+++++.+++|+..+..+. . |.+...++.+|. ++++.+++|.++|..
T Consensus 146 ~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 146 KVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD 204 (206)
T ss_dssp CCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred eecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 456788999998876542 2 334445555554 599999999999853
No 74
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.80 E-value=3.3e-08 Score=100.64 Aligned_cols=87 Identities=16% Similarity=0.114 Sum_probs=56.9
Q ss_pred CCeEEEEeeHHHH-HHHHHhCCCcEEEEEeCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHH--Hh----hhcCCCc
Q psy11425 217 NVDILLEIDFQGA-KQIKKKFPNAIGIFILPPSLDSLKERLYKRG----QDKYDVISRRILSANK--EI----SYANKFD 285 (672)
Q Consensus 217 G~~vIldi~~~g~-~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg----~~~~e~i~~rl~~~~~--e~----~~~~~~D 285 (672)
...+|+++.+... ..+... .+ .+|||.+| ++++.+|+..|. ..+.+.+..++..... .. .+...+|
T Consensus 131 ~~~vIveG~~~~~~~~~~~~-~d-~vi~l~~~-~e~~~~R~~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad 207 (252)
T 1uj2_A 131 ADVVLFEGILAFYSQEVRDL-FQ-MKLFVDTD-ADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYAD 207 (252)
T ss_dssp CSEEEEECTTTTSSHHHHHH-CS-EEEEEECC-HHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCS
T ss_pred CcEEEEeeeccccCHHHHHh-cC-eeEEEeCC-HHHHHHHHHHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCc
Confidence 4568888744321 223332 33 57999987 899999998774 3566777767665331 11 3456789
Q ss_pred EEE----EcC-CHHHHHHHHHHHHHh
Q psy11425 286 YII----INN-KFSKALLQLKAIINA 306 (672)
Q Consensus 286 ~VI----~Nd-dle~a~~qL~~iI~~ 306 (672)
++| .|+ +++++.++|.+++..
T Consensus 208 ~vI~~~id~~~s~e~v~~~I~~~l~~ 233 (252)
T 1uj2_A 208 VIIPRGADNLVAINLIVQHIQDILNG 233 (252)
T ss_dssp EEEETGGGCHHHHHHHHHHHHHHHHC
T ss_pred EEEecCCCChhHHHHHHHHHHHHHcc
Confidence 998 554 488999999888864
No 75
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.80 E-value=4.8e-08 Score=97.52 Aligned_cols=170 Identities=12% Similarity=0.062 Sum_probs=92.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHc------CCchhHHh--
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKS------GKFLEWAE-- 197 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~------g~fle~~~-- 197 (672)
++++|+|.|++||||||+++.|.+.....++..-.+||.|..... -+.....+.. ..+-..++
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~---------g~~ir~~l~~~~~~~~~~~~~~~e~l 72 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQL---------AEKLRSLLLDIKSVGDEVITDKAEVL 72 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHH---------HHHHHHHHHSTTTTTTCCCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHH---------HHHHHHHHhcccccccccCChHHHHH
Confidence 478999999999999999999988753222211256777642210 1122222221 11111111
Q ss_pred -HhccccCcchHHHHHHHhcCCeEEEEe---------------eHHHHHHHHHh---CCC-cEEEEEeCCCHHHHHHHHH
Q psy11425 198 -VHGNFYGTSFFPIVREIKSNVDILLEI---------------DFQGAKQIKKK---FPN-AIGIFILPPSLDSLKERLY 257 (672)
Q Consensus 198 -~~g~~YGt~~~~I~~~l~~G~~vIldi---------------~~~g~~~l~~~---~~~-~~vIfI~~ps~e~l~~RL~ 257 (672)
+....+--....|...+++|.+||+|= +...+..+... .+. ..+||++.| +++..+|+.
T Consensus 73 L~~A~R~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~-~e~~~~Ri~ 151 (213)
T 4tmk_A 73 MFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVT-PEVGLKRAR 151 (213)
T ss_dssp HHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCC-HHHHHHHHH
Confidence 000001011234667788999999992 12222333322 222 356888876 999999999
Q ss_pred HcCCCC-H----HHHHHHHHHHHHHhhhcCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 258 KRGQDK-Y----DVISRRILSANKEISYANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 258 ~Rg~~~-~----e~i~~rl~~~~~e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
+|+..+ . .+..+++.....++... ...++++|. ++++..++|.++|..
T Consensus 152 ~R~~~dr~E~~~~~f~~rv~~~y~~la~~-~~~~~vIDa~~s~eeV~~~I~~~l~~ 206 (213)
T 4tmk_A 152 ARGELDRIEQESFDFFNRTRARYLELAAQ-DKSIHTIDATQPLEAVMDAIRTTVTH 206 (213)
T ss_dssp HHSSCCTTTTSCHHHHHHHHHHHHHHHHT-CTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred hcCCccchhhhHHHHHHHHHHHHHHHHHH-CCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 986421 1 22334444433333211 133444444 599999999888864
No 76
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.80 E-value=3.7e-08 Score=93.40 Aligned_cols=65 Identities=14% Similarity=0.208 Sum_probs=44.5
Q ss_pred cEEEEEeCCCHHHHHHHHH--Hc-CC---CCHHHHHHHHHHHHHHh--hhcCCCcEEEEcC--CHHHHHHHHHHHHH
Q psy11425 239 AIGIFILPPSLDSLKERLY--KR-GQ---DKYDVISRRILSANKEI--SYANKFDYIIINN--KFSKALLQLKAIIN 305 (672)
Q Consensus 239 ~~vIfI~~ps~e~l~~RL~--~R-g~---~~~e~i~~rl~~~~~e~--~~~~~~D~VI~Nd--dle~a~~qL~~iI~ 305 (672)
..+|||.+| ++++.+|+. .| +. ...+....++..+..+. .|.. +|++|.|+ +++++.++|.+++.
T Consensus 95 ~~~i~l~~~-~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Id~~~~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 95 GTVVYLFAP-AEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQD-VAHYVVDATQPPAAIVCELMQTMR 169 (173)
T ss_dssp SEEEEEECC-HHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHH-HCSEEEETTSCHHHHHHHHHHHTT
T ss_pred CeEEEEECC-HHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHh-CcEEEECCCCCHHHHHHHHHHHhc
Confidence 367899976 999999998 77 21 22233445555543332 2333 78999988 59999999988774
No 77
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.79 E-value=2.4e-08 Score=99.77 Aligned_cols=160 Identities=23% Similarity=0.211 Sum_probs=91.4
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchH
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFF 208 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~ 208 (672)
+|+|+|++||||||+++.|.+.+...++......|.+..+ |.. .-..+...+..|.++... ....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~---~~~----~g~~i~~~~~~g~~~~~~--------~~~~ 66 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGG---GTE----LGKKAKEFIDRGDLVPDD--------ITIP 66 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTT---TCH----HHHHHHHHHTTTCCCCHH--------HHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHc---CCH----HHHHHHHHHHcCCcCcHH--------HHHH
Confidence 6999999999999999999887422122222222444322 111 012344444455543221 1122
Q ss_pred HHHHHHhc--CCeEEEEeeHHH---HHHHHH----hCC-CcEEEEEeCCCHHHHHHHHHHcCC-----------------
Q psy11425 209 PIVREIKS--NVDILLEIDFQG---AKQIKK----KFP-NAIGIFILPPSLDSLKERLYKRGQ----------------- 261 (672)
Q Consensus 209 ~I~~~l~~--G~~vIldi~~~g---~~~l~~----~~~-~~~vIfI~~ps~e~l~~RL~~Rg~----------------- 261 (672)
.+...+.. |..+|+|+.+.. +..+.. ... -..+||+..| ++++.+|+..|+.
T Consensus 67 ~i~~~l~~~~g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~ 145 (223)
T 2xb4_A 67 MVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLP-REVAKNRIMGRRICKNNPNHPNNIFIDAIK 145 (223)
T ss_dssp HHHHHHHHHCTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTBCEESSCTTSCCBTTCGGGC
T ss_pred HHHHHHhcccCCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcccCCccccCCccccccCCCc
Confidence 34455566 888999965443 223322 122 2356888876 8999999998862
Q ss_pred ------------------CCHH-HHHHHHHHHHHH----h----hhcC-----CCcEEEEcC--CHHHHHHHHHHHH
Q psy11425 262 ------------------DKYD-VISRRILSANKE----I----SYAN-----KFDYIIINN--KFSKALLQLKAII 304 (672)
Q Consensus 262 ------------------~~~e-~i~~rl~~~~~e----~----~~~~-----~~D~VI~Nd--dle~a~~qL~~iI 304 (672)
++.+ .+.+|+..+... . .|.. ...++++|. ++++.+++|.++|
T Consensus 146 ~~~~~~~~~~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l 222 (223)
T 2xb4_A 146 PNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222 (223)
T ss_dssp CBTTBCTTTCCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 1235 778887654332 1 2333 223444444 5999999998776
No 78
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.78 E-value=1e-09 Score=115.06 Aligned_cols=95 Identities=17% Similarity=0.056 Sum_probs=75.6
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCC---------ceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhH
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHK---------IKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEW 195 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~---------~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~ 195 (672)
.++++|+|+||+|||||||+..|.+.++. ++..++.+|++|++.|.+|++|||++...|...+..+.|.++
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~ 87 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRD 87 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHH
Confidence 46789999999999999999999988752 445567899999999999999999988888766655556555
Q ss_pred HhHhccccCcchHHHHHHHhcCCeEEEEeeHHHH
Q psy11425 196 AEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGA 229 (672)
Q Consensus 196 ~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~ 229 (672)
. ...+..+...|+.+|+.+-.-.+
T Consensus 88 a----------~~~i~~i~~~g~~pilVGGTglY 111 (316)
T 3foz_A 88 A----------LAEMADITAAGRIPLLVGGTMLY 111 (316)
T ss_dssp H----------HHHHHHHHHTTCEEEEEESCHHH
T ss_pred H----------HHHHHHHHhCCCcEEEEcCcHHH
Confidence 3 45677788889998888644333
No 79
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.77 E-value=2.4e-08 Score=96.36 Aligned_cols=116 Identities=18% Similarity=0.227 Sum_probs=65.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHH-hHhcccc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWA-EVHGNFY 203 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~-~~~g~~Y 203 (672)
.++++|+|+|+|||||||+++.|.+... +.+......| +.+...+.... .+|. ......|
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~-~~~i~~D~~~-----------------~~~~~~~~~~~-~~~~~~~~~~~~ 63 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR-LPLLSKDAFK-----------------EVMFDGLGWSD-REWSRRVGATAI 63 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT-CCEEEHHHHH-----------------HHHHHHHCCCS-HHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC-CeEecHHHHH-----------------HHHHHhcCccc-hHHHHHhhHHHH
Confidence 3568999999999999999999988642 2111111111 11111110000 0111 1111123
Q ss_pred CcchHHHHHHHhcCCeEEEEeeHHH------HHHHHHhCCCc-EEEEEeCCCHHHHHHHHHHcC
Q psy11425 204 GTSFFPIVREIKSNVDILLEIDFQG------AKQIKKKFPNA-IGIFILPPSLDSLKERLYKRG 260 (672)
Q Consensus 204 Gt~~~~I~~~l~~G~~vIldi~~~g------~~~l~~~~~~~-~vIfI~~ps~e~l~~RL~~Rg 260 (672)
......+...+..|..+|+|..+.. +..+......+ .+||+.+| ++++.+|+..|+
T Consensus 64 ~~~~~~~~~~l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~-~e~~~~R~~~R~ 126 (193)
T 2rhm_A 64 MMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVAS-GDVLVERILSRI 126 (193)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHHhc
Confidence 3333345566778889999976521 22244444443 56777765 999999998875
No 80
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.77 E-value=1.8e-09 Score=113.45 Aligned_cols=99 Identities=14% Similarity=0.072 Sum_probs=78.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCC---------ceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHH
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHK---------IKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWA 196 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~---------~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~ 196 (672)
++++|+|+||+|||||||+..|.+.++. ++..++.+|++|++.|.+|++|||++...|...+..+.|.++.
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a 81 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA 81 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH
Confidence 4679999999999999999999998752 3556789999999999999999999888887766666666553
Q ss_pred hHhccccCcchHHHHHHHhcCCeEEEEeeH-HHHHHHHH
Q psy11425 197 EVHGNFYGTSFFPIVREIKSNVDILLEIDF-QGAKQIKK 234 (672)
Q Consensus 197 ~~~g~~YGt~~~~I~~~l~~G~~vIldi~~-~g~~~l~~ 234 (672)
...|..+...|+++|+.+-. -.++.+..
T Consensus 82 ----------~~~i~~i~~~gk~pIlVGGTglYi~aLl~ 110 (322)
T 3exa_A 82 ----------TPLITEIHERGRLPFLVGGTGLYVNAVIH 110 (322)
T ss_dssp ----------HHHHHHHHHTTCEEEEESCCHHHHHHHHH
T ss_pred ----------HHHHHHHHhCCCcEEEEcCcHHHHHHHHc
Confidence 56777888899998888644 34444444
No 81
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.76 E-value=9.3e-09 Score=98.97 Aligned_cols=66 Identities=5% Similarity=-0.118 Sum_probs=43.0
Q ss_pred EEEEEeCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHH--HhhhcCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 240 IGIFILPPSLDSLKERLYKRGQ---DKYDVISRRILSANK--EISYANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 240 ~vIfI~~ps~e~l~~RL~~Rg~---~~~e~i~~rl~~~~~--e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
.+|||.+| ++++.+|+..|+. ........++..... +..|...+|++|.|+ +++++.++|.+++..
T Consensus 96 ~vV~L~~~-~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~Idt~~~s~ee~~~~I~~~l~~ 168 (184)
T 2iyv_A 96 TVVYLEIS-AAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQV 168 (184)
T ss_dssp CEEEEECC-HHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHHHCSEEEECSSSCHHHHHHHHHTTSCC
T ss_pred eEEEEeCC-HHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHHhccCCEEEECCCCCHHHHHHHHHHHHhh
Confidence 57899976 9999999988752 111112233433322 223445689999988 499999998877743
No 82
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.74 E-value=5.3e-09 Score=106.95 Aligned_cols=122 Identities=13% Similarity=0.068 Sum_probs=75.1
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCCCceee---------cccccccCCCCCCCCcccccCCHHHHHH-HHHcCCchhHHh
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLS---------ISTTTRPMRPGEKNGREYYFTNIDNFKK-LQKSGKFLEWAE 197 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~---------v~~TTR~~r~~E~~G~dY~fvs~~~F~~-~i~~g~fle~~~ 197 (672)
++|+|+||+||||||+++.|.+......+. ...+|+++++.+..|..|+|.+...+.. ......|.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~-- 79 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRR-- 79 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHH--
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHH--
Confidence 589999999999999999998764321111 1345677777788888888876432211 0000011111
Q ss_pred HhccccCcchHHHHHHHhcCCeEEEEeeH-HHHHHHHHh----C-CCcEEEEEeCCCHHHHHHHHHHcC
Q psy11425 198 VHGNFYGTSFFPIVREIKSNVDILLEIDF-QGAKQIKKK----F-PNAIGIFILPPSLDSLKERLYKRG 260 (672)
Q Consensus 198 ~~g~~YGt~~~~I~~~l~~G~~vIldi~~-~g~~~l~~~----~-~~~~vIfI~~ps~e~l~~RL~~Rg 260 (672)
....+ ..+..|+.+|+++.. ..++.+... . ....+||+.+|+.+++.+|+.+|.
T Consensus 80 --------~~~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~ 139 (253)
T 2ze6_A 80 --------LIFEV-DWRKSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRV 139 (253)
T ss_dssp --------HHHHH-HTTTTSSEEEEEECCHHHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred --------HHHHH-HHHhCCCCeEEeccHHHHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHH
Confidence 12334 445678888877643 333333332 1 234678999886699999998874
No 83
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.74 E-value=4.2e-08 Score=92.72 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=43.9
Q ss_pred cEEEEEeCCCHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHHhhhcCCCcEEEEcC--CHHHHHHHHHHHHHhcc
Q psy11425 239 AIGIFILPPSLDSLKERLYKRGQDK-----YDVISRRILSANKEISYANKFDYIIINN--KFSKALLQLKAIINANR 308 (672)
Q Consensus 239 ~~vIfI~~ps~e~l~~RL~~Rg~~~-----~e~i~~rl~~~~~e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~~~~ 308 (672)
..+||+.+| ++++.+|+..|.... .+.+..++..... .|.. +|++| |+ +++++.++|.+++....
T Consensus 94 ~~~i~l~~~-~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~~~~--~~~~-~~~~i-~~~~~~~~~~~~i~~~l~~~~ 165 (168)
T 2pt5_A 94 GTTVFIDIP-FEVFLERCKDSKERPLLKRPLDEIKNLFEERRK--IYSK-ADIKV-KGEKPPEEVVKEILLSLEGNA 165 (168)
T ss_dssp SEEEEEECC-HHHHHHHCBCTTCCBGGGSCGGGTHHHHHHHHH--HHTT-SSEEE-ECSSCHHHHHHHHHHHHHTSC
T ss_pred CEEEEEECC-HHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHH--HHHh-CCEEE-CCCCCHHHHHHHHHHHHHhcc
Confidence 467899976 999999998753211 2223333332221 2444 89999 77 59999999999987654
No 84
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.73 E-value=9.8e-09 Score=106.78 Aligned_cols=132 Identities=17% Similarity=0.149 Sum_probs=75.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCc--ccccCCHHHHHHHHHcCCchhHHhHhcccc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGR--EYYFTNIDNFKKLQKSGKFLEWAEVHGNFY 203 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~--dY~fvs~~~F~~~i~~g~fle~~~~~g~~Y 203 (672)
|+++|+|+|+|||||||+++.|.+.+.++.+......|....+...|. .|. ...+.+ . .
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~~~~g~~~~~~-~~~~~~---------~-----~---- 61 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYT-KKKEGI---------V-----T---- 61 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCCC---CC-HHHHHH---------H-----H----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhccCCcccccccc-hhhhhH---------H-----H----
Confidence 467999999999999999999998643443333333333211111121 121 000000 0 0
Q ss_pred CcchHHHHHHH---hcCCeEEEEeeHHH---HHHHH---HhCC-CcEEEEEeCCCHHHHHHHHHHcC--CCCHHHHHHHH
Q psy11425 204 GTSFFPIVREI---KSNVDILLEIDFQG---AKQIK---KKFP-NAIGIFILPPSLDSLKERLYKRG--QDKYDVISRRI 271 (672)
Q Consensus 204 Gt~~~~I~~~l---~~G~~vIldi~~~g---~~~l~---~~~~-~~~vIfI~~ps~e~l~~RL~~Rg--~~~~e~i~~rl 271 (672)
......+...+ ..|..+|+|..+.. ...+. .... ...+||+.+ |.+++.+|+..|+ ..+.+.+.+++
T Consensus 62 ~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~-~~e~~~~R~~~R~~~~~~~e~i~~~~ 140 (301)
T 1ltq_A 62 GMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDV-PWTELVKRNSKRGTKAVPIDVLRSMY 140 (301)
T ss_dssp HHHHHHHHHHTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCC-CHHHHHHHHHHCGGGCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEC-CHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 00122345566 67888999874422 22222 2222 346788886 5999999999986 34567777777
Q ss_pred HHHHHH
Q psy11425 272 LSANKE 277 (672)
Q Consensus 272 ~~~~~e 277 (672)
......
T Consensus 141 ~~~~~~ 146 (301)
T 1ltq_A 141 KSMREY 146 (301)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 665443
No 85
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.72 E-value=3.6e-08 Score=93.50 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=40.2
Q ss_pred cEEEEEeCCCHHHHHHHHHHcC-----CCC-HHHHHHHHHHHHHHhhhcCCCcEEEEcC-CHHHHHHHHHHHH
Q psy11425 239 AIGIFILPPSLDSLKERLYKRG-----QDK-YDVISRRILSANKEISYANKFDYIIINN-KFSKALLQLKAII 304 (672)
Q Consensus 239 ~~vIfI~~ps~e~l~~RL~~Rg-----~~~-~e~i~~rl~~~~~e~~~~~~~D~VI~Nd-dle~a~~qL~~iI 304 (672)
..+|||.+| ++++.+|+..|. ..+ .+.+...+.... ..|...+|++|.|+ +++++.++|.++|
T Consensus 98 ~~vi~l~~~-~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r~--~~~~~~a~~~Id~~~~~e~~~~~I~~~l 167 (168)
T 1zuh_A 98 GTTFYLKMD-FETLIKRLNQKEREKRPLLNNLTQAKELFEKRQ--ALYEKNASFIIDARGGLNNSLKQVLQFI 167 (168)
T ss_dssp EEEEEEECC-HHHHHHHHCC--------CCTTHHHHHHHHHHH--HHHHHTCSEEEEGGGCHHHHHHHHHHC-
T ss_pred CEEEEEECC-HHHHHHHHhccCCCCCCCccCHHHHHHHHHHHH--HHHHHHCCEEEECCCCHHHHHHHHHHHh
Confidence 467889876 999999998762 122 233444433322 12445689999988 6999988887654
No 86
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=98.69 E-value=2.3e-09 Score=116.26 Aligned_cols=89 Identities=18% Similarity=0.133 Sum_probs=75.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCCC---------ceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHh
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDHK---------IKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAE 197 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~~---------~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~ 197 (672)
.++|+|+||+|||||||+..|.+.++. ++..++.+|++|+++|..|.+|||++...|...+..+.|.++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a- 80 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETEC- 80 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHH-
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHH-
Confidence 468999999999999999999987643 4445788999999999999999999988888888778888875
Q ss_pred HhccccCcchHHHHHHHhcCCeEEEEee
Q psy11425 198 VHGNFYGTSFFPIVREIKSNVDILLEID 225 (672)
Q Consensus 198 ~~g~~YGt~~~~I~~~l~~G~~vIldi~ 225 (672)
...|..+...|+++|+.+-
T Consensus 81 ---------~~~i~~i~~~g~~pilVGG 99 (409)
T 3eph_A 81 ---------MNAIEDIHRRGKIPIVVGG 99 (409)
T ss_dssp ---------HHHHHHHHTTTCEEEEECS
T ss_pred ---------HHHHHHHHhcCCCEEEECC
Confidence 5577788889999888863
No 87
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.68 E-value=1.4e-07 Score=91.99 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=47.9
Q ss_pred cEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH-Hhhh-cCCCc-EEEEcC--CHHHHHHHHHHHHH
Q psy11425 239 AIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANK-EISY-ANKFD-YIIINN--KFSKALLQLKAIIN 305 (672)
Q Consensus 239 ~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~-e~~~-~~~~D-~VI~Nd--dle~a~~qL~~iI~ 305 (672)
..+|||.+| ++++.+|+..|...+.+.+.+++..... +..+ ....| ++|.|+ +++++.++|.+++.
T Consensus 137 d~~i~l~a~-~e~~~~R~~~r~~~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 137 AHKFYLTAS-PEVRAWRRARERPQAYEEVLRDLLRRDERDKAQSAPAPDALVLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp SEEEEEECC-HHHHHHHHHHTSSSCHHHHHHHHHHHHHTC--CCCCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred cEEEEEECC-HHHHHHHHHhhcccCHHHHHHHHHHHHHHHhhcccCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 467999986 9999999999876666777766654221 1111 44577 889888 59999999988874
No 88
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.66 E-value=2.8e-07 Score=89.43 Aligned_cols=67 Identities=12% Similarity=0.115 Sum_probs=47.0
Q ss_pred cEEEEEeCCCHHHHHHHHHHcCCCCHH----HHHHHHHHHHHH-h-hhc-CCCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 239 AIGIFILPPSLDSLKERLYKRGQDKYD----VISRRILSANKE-I-SYA-NKFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 239 ~~vIfI~~ps~e~l~~RL~~Rg~~~~e----~i~~rl~~~~~e-~-~~~-~~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
..+||+.+| ++++.+|+..|++.... ....++..+..+ . .|. ...|++|.|+ +++++..+|.+++..
T Consensus 126 d~vi~L~~~-~e~~~~Rl~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~l~~ 200 (205)
T 2jaq_A 126 DIVIYLRVS-TKTAISRIKKRGRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAELDVKTQIELIMNKLNS 200 (205)
T ss_dssp SEEEEEECC-HHHHHHHHHHHTCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEeCC-HHHHHHHHHHcCChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCCCHHHHHHHHHHHHHH
Confidence 367899976 99999999988653211 334555554433 2 233 5678899887 699999999988864
No 89
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.65 E-value=4.1e-08 Score=98.71 Aligned_cols=170 Identities=11% Similarity=-0.010 Sum_probs=84.6
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCC-ceeecccccccCCCCCCCCcccccCCHHHHHHHHHc-CCchhHHh---Hh
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHK-IKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKS-GKFLEWAE---VH 199 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~-~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~-g~fle~~~---~~ 199 (672)
.++++|+|.|++||||||+++.|.+.... .++.+..+||.|..+.. -+.+.+.+.. +.+-.+.+ +.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~---------g~~ir~~l~~~~~~~~~~e~llf~ 89 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLL---------NESVRNLLFKAQGLDSLSELLFFI 89 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHH---------HHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChH---------HHHHHHHHhCCCCCCHHHHHHHHH
Confidence 45789999999999999999999887543 44455555777642211 1222233322 11211111 11
Q ss_pred ccccCcchHHHHHHHhcCCeEEEEe---------------eHHHHHHHHHhC--C-CcEEEEEeCCCHHHHHHHHHHcCC
Q psy11425 200 GNFYGTSFFPIVREIKSNVDILLEI---------------DFQGAKQIKKKF--P-NAIGIFILPPSLDSLKERLYKRGQ 261 (672)
Q Consensus 200 g~~YGt~~~~I~~~l~~G~~vIldi---------------~~~g~~~l~~~~--~-~~~vIfI~~ps~e~l~~RL~~Rg~ 261 (672)
...+......|...+.+|.+||+|= +.+.+..+.... + -..+||++.| +++..+|+ .|++
T Consensus 90 a~R~~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~-~e~~~~Ri-~rdr 167 (223)
T 3ld9_A 90 AMRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVD-INESLSRS-CKNG 167 (223)
T ss_dssp HHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC--------------
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCC-HHHHHHHh-ccCc
Confidence 1122222233566778899999882 122233333222 2 2356888876 88899998 5554
Q ss_pred CCH--HHHHHHHHHHHHHhh-hcCCCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 262 DKY--DVISRRILSANKEIS-YANKFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 262 ~~~--e~i~~rl~~~~~e~~-~~~~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
... .+...++.....++. ......++|.++ ++++. ++|.++|..
T Consensus 168 ~E~~~~e~~~rv~~~y~~la~~~~~~~~vIDa~~sieeV-~~I~~~l~~ 215 (223)
T 3ld9_A 168 YEFADMEFYYRVRDGFYDIAKKNPHRCHVITDKSETYDI-DDINFVHLE 215 (223)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCTTTEEEEESSCSSSCC-CHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHCCCCEEEEcCCCCHHHH-HHHHHHHHH
Confidence 322 234455555443332 212235566665 58888 888777754
No 90
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.65 E-value=9.9e-08 Score=93.69 Aligned_cols=169 Identities=18% Similarity=0.078 Sum_probs=82.9
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceeeccccc-ccCCCCC--CCCc-cc---ccCCHHHHHHHHHcCCchhHHh
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTT-RPMRPGE--KNGR-EY---YFTNIDNFKKLQKSGKFLEWAE 197 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TT-R~~r~~E--~~G~-dY---~fvs~~~F~~~i~~g~fle~~~ 197 (672)
.++.+|+|+|+|||||||+++.|.+..+++.+...... ++..... ..+. ++ ...+...+...+. .+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~-----~~l~ 93 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAIS-----CWME 93 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHH-----HHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHH-----HHHh
Confidence 35679999999999999999999987533332222111 1110000 0000 00 0123333333221 1100
Q ss_pred HhccccCcchHHHHHHHhcCCeEEEEeeHHHH-HHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHH-HH-
Q psy11425 198 VHGNFYGTSFFPIVREIKSNVDILLEIDFQGA-KQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRIL-SA- 274 (672)
Q Consensus 198 ~~g~~YGt~~~~I~~~l~~G~~vIldi~~~g~-~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~-~~- 274 (672)
....+.... .+.. ....+.+|+++-+... ..+. ..+ ..+||+.+| ++++.+|+..|+... +....++. .+
T Consensus 94 -~~~~~~~~~-~~~~-~~~~~~vi~eg~~~~~~~~~~-~~~-d~~i~l~~~-~~~~~~R~~~R~~~~-e~~~~~~~~~~~ 166 (207)
T 2qt1_A 94 -SARHSVVST-DQES-AEEIPILIIEGFLLFNYKPLD-TIW-NRSYFLTIP-YEECKRRRSTRVYQP-PDSPGYFDGHVW 166 (207)
T ss_dssp -HHTTSSCCC-------CCCCEEEEECTTCTTCGGGT-TTC-SEEEEEECC-HHHHHHHHHHSCCSS-CCCTTHHHHTHH
T ss_pred -CCCCCCcCC-Ceee-cCCCCEEEEeehHHcCcHHHH-Hhc-CeeEEEECC-HHHHHHHHHHcCCCc-cchHHHHHHHHh
Confidence 001122221 1111 2345677887732110 1111 122 467889876 888999998886432 11122222 11
Q ss_pred ---HHH-hhhcCCCcEE--EEcC-CHHHHHHHHHHHHH
Q psy11425 275 ---NKE-ISYANKFDYI--IINN-KFSKALLQLKAIIN 305 (672)
Q Consensus 275 ---~~e-~~~~~~~D~V--I~Nd-dle~a~~qL~~iI~ 305 (672)
... ..+...+|.+ |.|+ +++++++++.+++.
T Consensus 167 ~~~~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~ 204 (207)
T 2qt1_A 167 PMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLI 204 (207)
T ss_dssp HHHHHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHH
Confidence 111 1233445655 7777 69999999998885
No 91
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.63 E-value=2e-08 Score=113.75 Aligned_cols=160 Identities=17% Similarity=0.147 Sum_probs=86.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCC-chhHHhHhcccc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGK-FLEWAEVHGNFY 203 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~-fle~~~~~g~~Y 203 (672)
..+.+|+|+|++||||||+++.|.+.... .|..+.+++.+.+...+..+. |-.. +... .+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~-----------------~G~~~~~ld~D~ir~~l~~~~~f~~~-er~~-~l 430 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQA-----------------RGRKVTLLDGDVVRTHLSRGLGFSKE-DRIT-NI 430 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHH-----------------TTCCEEEECHHHHHHHTCTTCCSSHH-HHHH-HH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhh-----------------cCCeEEEECchHhhhhhcccccccHH-HHHH-HH
Confidence 34678999999999999999999876311 122333444444433322111 1110 0000 01
Q ss_pred CcchHHHHHHHhcCCeEEEEeeH--HHH-HHHHHhC--CCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HH
Q psy11425 204 GTSFFPIVREIKSNVDILLEIDF--QGA-KQIKKKF--PNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSAN-KE 277 (672)
Q Consensus 204 Gt~~~~I~~~l~~G~~vIldi~~--~g~-~~l~~~~--~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~-~e 277 (672)
......+...++.|..+|++... +.. ..++... .+.++|||.+| .+++.+|+. |+... ......+..+. ..
T Consensus 431 ~~i~~~~~~~l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~-~e~~~~Rl~-r~~~~-~~~~~~i~~~~~vr 507 (546)
T 2gks_A 431 LRVGFVASEIVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAP-VEVCEERDV-KGLYK-KAKEGLIKGFTGVD 507 (546)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECC-GGGHHHHCC-SSHHH-HC------CCBTTT
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCC-HHHHHHHhh-ccccc-cccHHHHHHHHhhh
Confidence 11122344566789999988532 111 2233222 24478999976 899999975 32100 00011121111 00
Q ss_pred hhhc--CCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 278 ISYA--NKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 278 ~~~~--~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
..|. ..+|++|.|+ +++++.++|.+++..
T Consensus 508 ~~~e~~~~adivIDts~~s~eev~~~I~~~L~~ 540 (546)
T 2gks_A 508 DPYEPPVAPEVRVDTTKLTPEESALKILEFLKK 540 (546)
T ss_dssp BCCCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred hccccccCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 1222 4579999996 599999999998865
No 92
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.62 E-value=2.3e-10 Score=112.72 Aligned_cols=171 Identities=15% Similarity=0.065 Sum_probs=85.4
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcch
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSF 207 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~ 207 (672)
++|+|+|++||||||+++.|.+.+...++.+..++.+....+..|..+.+.....|.... .+.+.+...+....|+. .
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~r~~~-~ 78 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLA-SSVYAMATLFALDRAGA-V 78 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEEEEEEEEE-EEHHHHHHHHHHHHHEE-H
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHcccccccC-CCHhHHHHHHHHHHhhh-H
Confidence 479999999999999999998876433344433332221111102221110000000000 00011111111222333 4
Q ss_pred HHHHHHHhcCCeEEEEeeHH------HH-----------HHHHHh-----C--CCcEEEEEeCCCHHHHHHHHHHcCC--
Q psy11425 208 FPIVREIKSNVDILLEIDFQ------GA-----------KQIKKK-----F--PNAIGIFILPPSLDSLKERLYKRGQ-- 261 (672)
Q Consensus 208 ~~I~~~l~~G~~vIldi~~~------g~-----------~~l~~~-----~--~~~~vIfI~~ps~e~l~~RL~~Rg~-- 261 (672)
..+...+..|..+|+|..+. +. ..+... . ....+||+..| ++++.+|+..|+.
T Consensus 79 ~~i~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~-~~~~~~R~~~R~~~~ 157 (214)
T 1gtv_A 79 HTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVS-AELAGERSRGRAQRD 157 (214)
T ss_dssp HHHHHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEE-HHHHHHHHHHHHHEB
T ss_pred HHHHHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCC-HHHHHHHHHcccccc
Confidence 45566666788899997542 11 112221 1 12346778776 8999999998853
Q ss_pred -----CC---HHHHHHHHHHHHHHhhhcC-CCc-EEEEcC-CHHHHHHHHH
Q psy11425 262 -----DK---YDVISRRILSANKEISYAN-KFD-YIIINN-KFSKALLQLK 301 (672)
Q Consensus 262 -----~~---~e~i~~rl~~~~~e~~~~~-~~D-~VI~Nd-dle~a~~qL~ 301 (672)
+. .....+++..+..+..... ..+ ++|.|+ +++++.++|.
T Consensus 158 ~~~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~vId~~~~~~~v~~~i~ 208 (214)
T 1gtv_A 158 PGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLA 208 (214)
T ss_dssp BEEEEEEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEBHHHHHHHHC
T ss_pred cccccccccccHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHhc
Confidence 11 1355666655544432211 245 455555 5888777764
No 93
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.60 E-value=4e-07 Score=91.44 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=59.7
Q ss_pred HHHHHHhcCCeEEEEeeHHHHHHHH--HhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHhhhc----
Q psy11425 209 PIVREIKSNVDILLEIDFQGAKQIK--KKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSAN-KEISYA---- 281 (672)
Q Consensus 209 ~I~~~l~~G~~vIldi~~~g~~~l~--~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~-~e~~~~---- 281 (672)
.+.++.+.+ .||+.+.-.+ .-+. ....+.+.|||.+| ++.+.+|+..+...+.+.+.+.+.... ....+.
T Consensus 108 ~i~~la~~~-~~Vi~Grggg-~vl~~~~~~~~~~~VfL~A~-~e~r~~Ri~~~~~~~~~~a~~~I~~~d~~R~~~Y~~yt 184 (223)
T 3hdt_A 108 VMRELAESE-PCIFVGRAAG-YVLDQDEDIERLIRIFVYTD-KVKKVQRVMEVDCIDEERAKRRIKKIEKERKEYYKYFT 184 (223)
T ss_dssp HHHHHHHHS-CEEEESTTHH-HHHHHCTTCCEEEEEEEECC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC-CEEEEeCCcc-hhcccccCCCCeEEEEEECC-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444444 4666654333 2231 22334678999986 999999998765556666655554422 111221
Q ss_pred -------CCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 282 -------NKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 282 -------~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
..+|++|.++ +++++.+.|...++.
T Consensus 185 g~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~~ 218 (223)
T 3hdt_A 185 GSEWHSMKNYDLPINTTKLTLEETAELIKAYIRL 218 (223)
T ss_dssp SSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 3689999887 499999999998864
No 94
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.59 E-value=2.3e-07 Score=91.51 Aligned_cols=169 Identities=15% Similarity=0.159 Sum_probs=87.2
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCC-chh--------HHh
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGK-FLE--------WAE 197 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~-fle--------~~~ 197 (672)
..+|.|+|++||||||+++.|.+.. ++.+......+.. -+..|.+ .+.|...-+... |.. ...
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l-g~~~~D~~~~~~~--a~~~g~~-----~~~~~~~~e~~~~~~~~~~~~~~~~~~ 77 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY-NIPLYSKELLDEV--AKDGRYS-----KEVLERFDEKPMNFAFIPVPAGGTTIS 77 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT-TCCEECHHHHHHT--TCC------------------------------------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh-CcCEECHHHHHHH--HHhcCCC-----HHHHHHHhhhchhHHHHHhcccccccc
Confidence 4689999999999999999998875 2323222221110 0111221 122221111000 110 000
Q ss_pred HhccccCcchHHHHHHHh-cCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q psy11425 198 VHGNFYGTSFFPIVREIK-SNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANK 276 (672)
Q Consensus 198 ~~g~~YGt~~~~I~~~l~-~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~~ 276 (672)
.....+-.-...+..+.. ....||+++.-.+ .-+. .....+.|||.+| ++++.+|+..+...+.+.+..++.....
T Consensus 78 ~~~~~~~~~~~~i~~la~~~~~~~Vi~Gr~g~-~vl~-~~~~~~~V~L~A~-~e~r~~R~~~~~~~~~~~~~~~i~~~d~ 154 (201)
T 3fdi_A 78 LEQDIAIRQFNFIRKKANEEKESFVIVGRCAE-EILS-DNPNMISAFILGD-KDTKTKRVMEREGVDEKTALNMMKKMDK 154 (201)
T ss_dssp --CHHHHHHHHHHHHHHHTSCCCEEEESTTHH-HHTT-TCTTEEEEEEEEC-HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhcCCCEEEEECCcc-hhcC-CCCCeEEEEEECC-HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 000111111223333341 3445777764322 2222 2234678999986 9999999987755566666666654321
Q ss_pred -Hhhh-----------cCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 277 -EISY-----------ANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 277 -e~~~-----------~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
...+ ...+|++|.++ +++++.+.|..+++.
T Consensus 155 ~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~ 198 (201)
T 3fdi_A 155 MRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYIDS 198 (201)
T ss_dssp HHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 1111 12479999887 499999999888864
No 95
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.59 E-value=4e-10 Score=117.80 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=19.7
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.+.+|+|+|||||||||+++.|.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999885
No 96
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.58 E-value=2.3e-07 Score=91.97 Aligned_cols=169 Identities=15% Similarity=0.238 Sum_probs=85.7
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCch-hHHh---Hhcc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFL-EWAE---VHGN 201 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fl-e~~~---~~g~ 201 (672)
|+++|+|-|+.||||||+++.|.+.... ++.+ ..||.|. |... -+.+...+..+.-+ .+.+ +...
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v-~~~~eP~-----~t~~----g~~ir~~l~~~~~~~~~~~~lLf~a~ 69 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV-IMTREPG-----GVPT----GEEIRKIVLEGNDMDIRTEAMLFAAS 69 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE-EEEESST-----TCHH----HHHHHHHHHSSCCCCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHC-CCCE-EEeeCCC-----CChH----HHHHHHHHhcccCCCHHHHHHHHHHH
Confidence 6789999999999999999999886532 1112 3455552 1110 12233333332211 1100 0000
Q ss_pred ccCcchHHHHHHHhcCCeEEEEe---------------eHHHHHHHHHh---CCC-cEEEEEeCCCHHHHHHHHHHcCCC
Q psy11425 202 FYGTSFFPIVREIKSNVDILLEI---------------DFQGAKQIKKK---FPN-AIGIFILPPSLDSLKERLYKRGQD 262 (672)
Q Consensus 202 ~YGt~~~~I~~~l~~G~~vIldi---------------~~~g~~~l~~~---~~~-~~vIfI~~ps~e~l~~RL~~Rg~~ 262 (672)
.+-.....+...+.+|.+||+|= +...+..+... .+. ..+||++.| +++..+|+.+|+..
T Consensus 70 R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~-~e~~~~Ri~~r~~~ 148 (205)
T 4hlc_A 70 RREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVS-AEVGRERIIKNSRD 148 (205)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCC-HHHHHHHHHhcCCc
Confidence 00001234556778899999882 11222333321 223 356888876 99999999888653
Q ss_pred CH----H--HHHHHHHHHHHHhhhcCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 263 KY----D--VISRRILSANKEISYANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 263 ~~----e--~i~~rl~~~~~e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
.+ + ...+++.....++.....--++++|. ++++..++|.+.|..
T Consensus 149 ~dr~e~~~~~f~~~v~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~ 200 (205)
T 4hlc_A 149 QNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIK 200 (205)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred ccchhccCHHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 21 1 12233333222222112223555554 588988888887754
No 97
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.58 E-value=4.7e-07 Score=89.44 Aligned_cols=88 Identities=14% Similarity=0.312 Sum_probs=55.7
Q ss_pred HhcCCeEEEEeeHHHHHHHHHhCC-CcEEEEEeCCCHHHHHHHHH----HcCC-CCHHHHHHHHHHHH-HHh-----hhc
Q psy11425 214 IKSNVDILLEIDFQGAKQIKKKFP-NAIGIFILPPSLDSLKERLY----KRGQ-DKYDVISRRILSAN-KEI-----SYA 281 (672)
Q Consensus 214 l~~G~~vIldi~~~g~~~l~~~~~-~~~vIfI~~ps~e~l~~RL~----~Rg~-~~~e~i~~rl~~~~-~e~-----~~~ 281 (672)
+..|..+|+++...+ . ...+ ..++|||.+| ++++.+|+. .|+. .+.+.+..++..+. .+. .+.
T Consensus 115 ~~~~~~~vi~g~~~~-~---~~~~~~~~vi~l~a~-~e~~~~R~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~ 189 (219)
T 2h92_A 115 LAAEKGIVMDGRDIG-T---VVLPDADLKVYMIAS-VEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLR 189 (219)
T ss_dssp HHTTCCEEEEESSCC-C---CCCTTCSEEEEEECC-HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSC
T ss_pred hccCCcEEEEcCCcc-c---eecCCCCEEEEEECC-HHHHHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccc
Confidence 445666777763110 0 0111 2467899876 889888874 4554 36677777776543 222 333
Q ss_pred CCCc-EEEEcC--CHHHHHHHHHHHHHh
Q psy11425 282 NKFD-YIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 282 ~~~D-~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
..+| ++|.|+ +++++.++|.+++..
T Consensus 190 ~~~d~~~Id~~~~~~ee~~~~I~~~l~~ 217 (219)
T 2h92_A 190 KADDAVTLDTTGKSIEEVTDEILAMVSQ 217 (219)
T ss_dssp CCTTCEEEECTTCCHHHHHHHHHHHHHT
T ss_pred cCCCeEEEECCCCCHHHHHHHHHHHHhc
Confidence 4466 888887 599999999998864
No 98
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.57 E-value=4.1e-07 Score=90.30 Aligned_cols=161 Identities=17% Similarity=0.121 Sum_probs=82.7
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTS 206 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~ 206 (672)
+..|+|+|++||||||+++.|.+.+...++......|..-++ +..+. ......+..|..+... ..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~---~t~~g----~~i~~~~~~g~~~~~~--------~~ 69 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKN---GTKIG----LEAKSIIESGNFVGDE--------IV 69 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHT---C--CC----HHHHHHHHHTCCCCHH--------HH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHc---CCHHH----HHHHHHHHCCCcCCHH--------HH
Confidence 357999999999999999999887521112211111110000 00000 1111112222211100 00
Q ss_pred hHHHHHHHh---cCCeEEEEeeHHH---HHHHH----HhCCC-cEEEEEeCCCHHHHHHHHHHcCC--------------
Q psy11425 207 FFPIVREIK---SNVDILLEIDFQG---AKQIK----KKFPN-AIGIFILPPSLDSLKERLYKRGQ-------------- 261 (672)
Q Consensus 207 ~~~I~~~l~---~G~~vIldi~~~g---~~~l~----~~~~~-~~vIfI~~ps~e~l~~RL~~Rg~-------------- 261 (672)
...+...+. .|..+|+|+-+.. ...+. ..... ..+||+.+| ++++.+|+..|+.
T Consensus 70 ~~~i~~~l~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~-~e~~~~Rl~~R~~~~~~g~~y~~~~~p 148 (217)
T 3be4_A 70 LGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEID-DSEIIERISGRCTHPASGRIYHVKYNP 148 (217)
T ss_dssp HHHHHHHHHTTTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECC-HHHHHHHHHTEEECTTTCCEEETTTBC
T ss_pred HHHHHHHHhccccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCCCccccCccccccCC
Confidence 112222232 3777888854322 22222 23322 367888876 9999999998741
Q ss_pred -------------------CCHHHHHHHHHHHHHHhh-----hcCCCcEEEEcC--CHHHHHHHHHHH
Q psy11425 262 -------------------DKYDVISRRILSANKEIS-----YANKFDYIIINN--KFSKALLQLKAI 303 (672)
Q Consensus 262 -------------------~~~e~i~~rl~~~~~e~~-----~~~~~D~VI~Nd--dle~a~~qL~~i 303 (672)
++.+.+.+++........ |.....++++|. ++++.+++|.++
T Consensus 149 p~~~~~~~~~~~~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~ 216 (217)
T 3be4_A 149 PKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKI 216 (217)
T ss_dssp CSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHH
T ss_pred CCccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhh
Confidence 235667777765543322 433334555554 589998888765
No 99
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.57 E-value=1.2e-07 Score=94.74 Aligned_cols=165 Identities=19% Similarity=0.147 Sum_probs=86.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGT 205 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt 205 (672)
++.+|+|+|++||||||+++.|.+.+...++......|...++ |... -......+..|.++.....
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~---~~~~----g~~i~~~~~~g~~~~~~~~------- 71 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLR---GTEI----GVLAKAFIDQGKLIPDDVM------- 71 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHH---TCHH----HHHHHHHHTTTCCCCHHHH-------
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhc---CChH----HHHHHHHHHcCCcCCHHHH-------
Confidence 3468999999999999999999887532222222222221100 0000 0001111111221110000
Q ss_pred chHHHHHHHh--cCCeEEEEeeHHHHHH---HHHhCCCcEEEEEeCCCHHHHHHHHHHcC--------------------
Q psy11425 206 SFFPIVREIK--SNVDILLEIDFQGAKQ---IKKKFPNAIGIFILPPSLDSLKERLYKRG-------------------- 260 (672)
Q Consensus 206 ~~~~I~~~l~--~G~~vIldi~~~g~~~---l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg-------------------- 260 (672)
...+...+. .+..+|+|..+..+.+ +........+||++.| .+++.+|+..|+
T Consensus 72 -~~~~~~~l~~~~~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~-~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~ 149 (227)
T 1zd8_A 72 -TRLALHELKNLTQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVP-FEVIKQRLTARWIHPASGRVYNIEFNPPKTVG 149 (227)
T ss_dssp -HHHHHHHHHTCTTSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECC-HHHHHHHHTCEEEETTTTEEEETTTBCCSSTT
T ss_pred -HHHHHHHHhcccCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECC-HHHHHHHHHcCcCCCccCCccccccCCCCccc
Confidence 001112222 2566788875433322 2221223467888876 999999998662
Q ss_pred -------------CCCHHHHHHHHHHHHHHh----hhcC-CCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 261 -------------QDKYDVISRRILSANKEI----SYAN-KFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 261 -------------~~~~e~i~~rl~~~~~e~----~~~~-~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
.++.+.+.+|+..+.... .+.. .--++++|. ++++++++|.++|..
T Consensus 150 ~~~~~~~~l~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~~~~~v~~~i~~~l~~ 214 (227)
T 1zd8_A 150 IDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGTETNKIWPYVYAFLQT 214 (227)
T ss_dssp BCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSHHHHHHHHHHHHTT
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCCCHHHHHHHHHHHHHh
Confidence 234567778876654332 1211 112555555 799999999999864
No 100
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.57 E-value=7.3e-08 Score=105.64 Aligned_cols=125 Identities=12% Similarity=0.047 Sum_probs=74.5
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYG 204 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YG 204 (672)
..+.+|+|+|+|||||||+++.|.+.. ++.+.. .+.| ..|+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~-~~~~i~---------------------~D~~-----------------~~~~ 296 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA-GYVHVN---------------------RDTL-----------------GSWQ 296 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG-TCEECC---------------------GGGS-----------------CSHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc-CcEEEc---------------------cchH-----------------HHHH
Confidence 356899999999999999999998764 222221 1111 0122
Q ss_pred cchHHHHHHHhcCCeEEEEeeH------HHHHHHH-HhCCCcEEEEEeCCCHHHHHHHHHHcCC------CCHHHHHHHH
Q psy11425 205 TSFFPIVREIKSNVDILLEIDF------QGAKQIK-KKFPNAIGIFILPPSLDSLKERLYKRGQ------DKYDVISRRI 271 (672)
Q Consensus 205 t~~~~I~~~l~~G~~vIldi~~------~g~~~l~-~~~~~~~vIfI~~ps~e~l~~RL~~Rg~------~~~e~i~~rl 271 (672)
.....+...+..|..+|+|... ..+..+. .......+||+.+ +.+++.+|+..|.. ...+.+..++
T Consensus 297 ~~~~~~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~-~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~ 375 (416)
T 3zvl_A 297 RCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCA-TIEQARHNNRFREMTDPSHAPVSDMVMFSY 375 (416)
T ss_dssp HHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECC-CHHHHHHHHHHHHHHCTTCCCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeC-CHHHHHHHHHhhcccCCCcCCCCHHHHHHH
Confidence 2233455667789999998542 2233332 3334455666665 59999999998853 2233333344
Q ss_pred HHHHHHhhhcCCCcEEEE
Q psy11425 272 LSANKEISYANKFDYIII 289 (672)
Q Consensus 272 ~~~~~e~~~~~~~D~VI~ 289 (672)
.....+......||+|+.
T Consensus 376 ~~~~e~P~~~E~fd~v~~ 393 (416)
T 3zvl_A 376 RKQFEPPTLAEGFLEILE 393 (416)
T ss_dssp HHHCCCCCGGGTCSEEEE
T ss_pred HHhcCCCCcccCCcEEEE
Confidence 333323344567888764
No 101
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.56 E-value=3.7e-07 Score=90.56 Aligned_cols=163 Identities=16% Similarity=0.147 Sum_probs=85.5
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTS 206 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~ 206 (672)
+.+|+|+|++||||||+++.|.+.+...++......|..-++ |..+ -......+..|.++.... .
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~---~~~~----g~~i~~~~~~g~~~~~~~--------~ 68 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAK---GTQL----GLEAKKIMDQGGLVSDDI--------M 68 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHT---TCHH----HHHHHHHHHTTCCCCHHH--------H
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHc---CChH----HHHHHHHHHCCCcCCHHH--------H
Confidence 468999999999999999999887522122221222211000 1000 011222222333211100 0
Q ss_pred hHHHHHHHh----cCCeEEEEeeHHHH---HHH----HHhCCCc-EEEEEeCCCHHHHHHHHHHcC--------------
Q psy11425 207 FFPIVREIK----SNVDILLEIDFQGA---KQI----KKKFPNA-IGIFILPPSLDSLKERLYKRG-------------- 260 (672)
Q Consensus 207 ~~~I~~~l~----~G~~vIldi~~~g~---~~l----~~~~~~~-~vIfI~~ps~e~l~~RL~~Rg-------------- 260 (672)
...+...+. .|..+|+|.-+... ..+ ......+ .+||+..| ++++.+|+..|+
T Consensus 69 ~~~l~~~l~~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~-~e~~~~R~~~r~~~~~~g~~y~~~~~ 147 (220)
T 1aky_A 69 VNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVD-DELLVARITGRLIHPASGRSYHKIFN 147 (220)
T ss_dssp HHHHHHHHHHCGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECC-HHHHHHHHHTEEECTTTCCEEETTTB
T ss_pred HHHHHHHHHhccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhCCCccCccCCccccccC
Confidence 111222222 35667888633222 122 2223333 67888876 999999998763
Q ss_pred -------------------CCCHHHHHHHHHHHHHHh-----hhcCCCcEEEEcC--CHHHHHHHHHHHHH
Q psy11425 261 -------------------QDKYDVISRRILSANKEI-----SYANKFDYIIINN--KFSKALLQLKAIIN 305 (672)
Q Consensus 261 -------------------~~~~e~i~~rl~~~~~e~-----~~~~~~D~VI~Nd--dle~a~~qL~~iI~ 305 (672)
.++.+.+.+|+....... .|.....++.+|. ++++.+++|.++|.
T Consensus 148 pp~~~~~d~~~~~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 218 (220)
T 1aky_A 148 PPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218 (220)
T ss_dssp CCSSTTBCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred CCcccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 133566777776554332 1221123444443 69999999988875
No 102
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.56 E-value=3.4e-08 Score=94.75 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=23.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
++++|+|+|+|||||||+++.|.+.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998874
No 103
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.54 E-value=1.2e-07 Score=89.95 Aligned_cols=63 Identities=10% Similarity=0.155 Sum_probs=35.1
Q ss_pred EEEEEeCCCHHHHHHHHHHcCC------C-C-HHHHHHHHHHHHHHhhhcCCCcEEEEcC--CHHHHHHHHHHHHH
Q psy11425 240 IGIFILPPSLDSLKERLYKRGQ------D-K-YDVISRRILSANKEISYANKFDYIIINN--KFSKALLQLKAIIN 305 (672)
Q Consensus 240 ~vIfI~~ps~e~l~~RL~~Rg~------~-~-~e~i~~rl~~~~~e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~ 305 (672)
.+||+.+| ++++.+|+..|+. . . .+.+...+.. .+-.|...+|++|.|+ +++++.++|..++.
T Consensus 99 ~~i~l~~~-~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~--r~~~~~~~a~~~id~~~~~~~~~~~~i~~~l~ 171 (173)
T 1kag_A 99 VVVYLETT-IEKQLARTQRDKKRPLLHVETPPREVLEALANE--RNPLYEEIADVTIRTDDQSAKVVANQIIHMLE 171 (173)
T ss_dssp EEEECCCC-HHHHHSCC------CCSSSSCCCHHHHHHHHHH--HHHHHHHHCSEEC-----CHHHHHHHHHHHHC
T ss_pred EEEEEeCC-HHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHH--HHHHHHhhCCEEEECCCCCHHHHHHHHHHHHH
Confidence 46888876 9999999987631 1 1 2333222211 1123445579999987 58999999988874
No 104
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.50 E-value=3.8e-06 Score=85.83 Aligned_cols=155 Identities=19% Similarity=0.156 Sum_probs=83.7
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC--CCceee--cccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhcc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD--HKIKLS--ISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGN 201 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~--~~~~~~--v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~ 201 (672)
++.+|+|+|+|||||||+++.|.+.. .++.+. ..+..|... .+ |.......|
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l----~~--~~~~~e~~~------------------ 58 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESF----PV--WKEKYEEFI------------------ 58 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTS----SS--CCGGGHHHH------------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHH----hh--hhHHHHHHH------------------
Confidence 35689999999999999999998752 122222 222222111 11 100000001
Q ss_pred ccCcchHHHHHHHhcCCeEEEEeeH--HH----HHHHHHhCCC-cEEEEEeCCCHHHHHHHHHHcCCC-CHHHHHHHHHH
Q psy11425 202 FYGTSFFPIVREIKSNVDILLEIDF--QG----AKQIKKKFPN-AIGIFILPPSLDSLKERLYKRGQD-KYDVISRRILS 273 (672)
Q Consensus 202 ~YGt~~~~I~~~l~~G~~vIldi~~--~g----~~~l~~~~~~-~~vIfI~~ps~e~l~~RL~~Rg~~-~~e~i~~rl~~ 273 (672)
+......+...+.. ..+|+|..+ .. +..+...... ..+||+.+| ++++.+|+..|+.. +.+.+......
T Consensus 59 -~~~~~~~i~~~l~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~~~~l~~~~~~ 135 (260)
T 3a4m_A 59 -KKSTYRLIDSALKN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKAS-LDVLIRRNIERGEKIPNEVIKKMYEK 135 (260)
T ss_dssp -HHHHHHHHHHHHTT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECC-HHHHHHHHHHTTCSSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 01112234455555 777887532 11 2222222333 467888865 99999999998753 34444433222
Q ss_pred HHHHh-hh-cCCCcEEEEcC---CHHHHHHHHHHHHHhc
Q psy11425 274 ANKEI-SY-ANKFDYIIINN---KFSKALLQLKAIINAN 307 (672)
Q Consensus 274 ~~~e~-~~-~~~~D~VI~Nd---dle~a~~qL~~iI~~~ 307 (672)
...-. .| +...+++|.++ ++++...+|...+...
T Consensus 136 ~e~~~~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~~~ 174 (260)
T 3a4m_A 136 FDEPGKKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSKEI 174 (260)
T ss_dssp CCCTTSSCGGGCCSEEEETTSCCCHHHHHHHHHHHHTSC
T ss_pred hcCccccCCCCCCEEEEeCCCCCCHHHHHHHHHhcccCC
Confidence 11101 11 13578888876 4788888888887653
No 105
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.50 E-value=6.3e-07 Score=90.08 Aligned_cols=89 Identities=16% Similarity=0.250 Sum_probs=55.3
Q ss_pred HhcCCeEEEEeeHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHH----HHcC-CCCHHHHHHHHHH-HHHHhh-----hcC
Q psy11425 214 IKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERL----YKRG-QDKYDVISRRILS-ANKEIS-----YAN 282 (672)
Q Consensus 214 l~~G~~vIldi~~~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL----~~Rg-~~~~e~i~~rl~~-~~~e~~-----~~~ 282 (672)
+..|..+|+++...+...+. . ...+|||.+| ++++.+|+ ..|+ ..+.+.+..++.. +..+.. +..
T Consensus 132 ~~~~~~~v~~g~~~~~~~l~--~-~d~vi~L~a~-~e~~~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~ 207 (236)
T 1q3t_A 132 IAQQGGIVMDGRDIGTVVLP--Q-AELKIFLVAS-VDERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQ 207 (236)
T ss_dssp HHTTSCEEEECSSCSSSSGG--G-CSEEEEEECC-HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSC
T ss_pred hcccCCEEEECCcchhhhcc--C-CCEEEEEECC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhcccccccc
Confidence 34566677775322110010 1 2467999986 88888887 5677 4466666666654 433332 223
Q ss_pred CCc-EEEEcC--CHHHHHHHHHHHHHh
Q psy11425 283 KFD-YIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 283 ~~D-~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
..| ++|.|+ +++++.++|.+++..
T Consensus 208 ~~d~~vId~~~~s~eev~~~I~~~l~~ 234 (236)
T 1q3t_A 208 AEDAVYLDTTGLNIQEVVEKIKAEAEK 234 (236)
T ss_dssp CTTCEEEECSSCCHHHHHHHHHHHHHH
T ss_pred cCCEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345 888887 599999999988853
No 106
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.50 E-value=5.4e-07 Score=89.03 Aligned_cols=159 Identities=16% Similarity=0.215 Sum_probs=85.4
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccC-CCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcch
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPM-RPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSF 207 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~-r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~ 207 (672)
.|+|+|++||||||+++.|.+.+...++......|.. ..+...|.. +...+..|.++.... ..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~--------i~~~~~~g~~~~~~~--------~~ 65 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQ--------AKDIMDAGKLVTDEL--------VI 65 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGG--------GHHHHHHTCCCCHHH--------HH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHH--------HHHHHHCCCcCCHHH--------HH
Confidence 4899999999999999999886532333443444431 112122221 111122222211100 01
Q ss_pred HHHHHHHhc---CCeEEEEeeHHHH---HHHHHhCC-CcEEEEEeCCCHHHHHHHHHHcC--------------------
Q psy11425 208 FPIVREIKS---NVDILLEIDFQGA---KQIKKKFP-NAIGIFILPPSLDSLKERLYKRG-------------------- 260 (672)
Q Consensus 208 ~~I~~~l~~---G~~vIldi~~~g~---~~l~~~~~-~~~vIfI~~ps~e~l~~RL~~Rg-------------------- 260 (672)
..+...+.. +..+|+|..+... ..+..... ...+||++.| ++++.+|+..|+
T Consensus 66 ~~i~~~l~~~~~~~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~-~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~ 144 (214)
T 1e4v_A 66 ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVP-DELIVDRIVGRRVHAPSGRVYHVKFNPPKVEG 144 (214)
T ss_dssp HHHHHHHTSGGGGGCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHTEEEETTTTEEEETTTBCCSSTT
T ss_pred HHHHHHHhccccCCCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHCCcccCCcCCcccccCCCCCccc
Confidence 112222322 2456777643333 23333322 2357888876 899999998653
Q ss_pred -------------CCCHHHHHHHHHHHHHHh-----hhcCC-----CcEEEEcC--CHHHHHHHHHHHH
Q psy11425 261 -------------QDKYDVISRRILSANKEI-----SYANK-----FDYIIINN--KFSKALLQLKAII 304 (672)
Q Consensus 261 -------------~~~~e~i~~rl~~~~~e~-----~~~~~-----~D~VI~Nd--dle~a~~qL~~iI 304 (672)
+++.+.+.+|+..+..+. .|... .-++.+|. ++++.+.+|.++|
T Consensus 145 ~~~~~~~~l~~r~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l 213 (214)
T 1e4v_A 145 KDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213 (214)
T ss_dssp BCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred cccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 244677888887655432 12211 22444444 5899999998776
No 107
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.48 E-value=6e-07 Score=91.72 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+.+|+|+|+|||||||+++.|.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6789999999999999999998853
No 108
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.43 E-value=7.2e-07 Score=90.88 Aligned_cols=67 Identities=10% Similarity=0.140 Sum_probs=43.8
Q ss_pred cEEEEEeCCCHHHHHHHHHH-----cCCCCHHHHHHHHHHHHH-H----h-hhcCCCc-EEEEcC--CHHHHHHHHHHHH
Q psy11425 239 AIGIFILPPSLDSLKERLYK-----RGQDKYDVISRRILSANK-E----I-SYANKFD-YIIINN--KFSKALLQLKAII 304 (672)
Q Consensus 239 ~~vIfI~~ps~e~l~~RL~~-----Rg~~~~e~i~~rl~~~~~-e----~-~~~~~~D-~VI~Nd--dle~a~~qL~~iI 304 (672)
.+.|||.++ ++++.+|... +...+.+.+..++..... + . .+....| ++|.|+ ++++++++|.+++
T Consensus 164 ~~~ifl~A~-~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~~~~eev~~~I~~~i 242 (252)
T 4e22_A 164 PVKIFLDAS-SQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVIEQALAYA 242 (252)
T ss_dssp SEEEEEECC-HHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECSSSCHHHHHHHHHHHH
T ss_pred CEEEEEECC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcCCCHHHHHHHHHHHH
Confidence 467999986 8887777654 445566776666644321 1 1 2334566 777777 5999999999988
Q ss_pred Hh
Q psy11425 305 NA 306 (672)
Q Consensus 305 ~~ 306 (672)
..
T Consensus 243 ~~ 244 (252)
T 4e22_A 243 QR 244 (252)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 109
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.39 E-value=3e-07 Score=87.76 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=40.9
Q ss_pred cEEEEEeCCCHHHHHHHHHHcC---CC--C-HHHHHHHHHHHHHHhhhcCCCcEEEEcC--CHHHHHHHHHHHHHhc
Q psy11425 239 AIGIFILPPSLDSLKERLYKRG---QD--K-YDVISRRILSANKEISYANKFDYIIINN--KFSKALLQLKAIINAN 307 (672)
Q Consensus 239 ~~vIfI~~ps~e~l~~RL~~Rg---~~--~-~e~i~~rl~~~~~e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~~~ 307 (672)
..+||+.+| ++++.+|+..|. +. . .+.+...+... ...|...+|++|.++ +++++.++|.+.+...
T Consensus 94 ~~~i~l~~~-~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r--~~~y~~~~~~~Idt~~~~~eev~~~I~~~l~~~ 167 (175)
T 1via_A 94 GFCIYLKAD-FEYLKKRLDKDEISKRPLFYDEIKAKKLYNER--LSKYEQKANFILNIENKNIDELLSEIKKVIKEG 167 (175)
T ss_dssp CEEEEEECC-HHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHH--HHHHHHHCSEEEECTTCCHHHHHHHHHHHHC--
T ss_pred CEEEEEeCC-HHHHHHHHhcccCCCCCCcccHHHHHHHHHHH--HHHHHhcCCEEEECCCCCHHHHHHHHHHHHHhc
Confidence 367889876 999999987662 21 1 22233222211 112333478999887 5999999999888643
No 110
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=98.37 E-value=1.7e-06 Score=85.14 Aligned_cols=166 Identities=12% Similarity=0.103 Sum_probs=86.2
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHh---HhccccCc
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAE---VHGNFYGT 205 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~---~~g~~YGt 205 (672)
+|+|-|+.||||||.++.|.+....-+..+ .+||.|. |.. .-+.+...+..+.+-.... +... ...
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v-~~treP~-----~t~----~~~~ir~~l~~~~~~~~~~~ll~~a~-r~~ 70 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKV-ILKREPG-----GTE----TGEKIRKILLEEEVTPKAELFLFLAS-RNL 70 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCE-EEEESSC-----SSH----HHHHHHHHHHHSCCCHHHHHHHHHHH-HHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcE-EEEECCC-----CCc----HHHHHHHHhhcccCChHHHHHHHHHH-HHH
Confidence 799999999999999998877642111222 3455552 211 1122333333332211111 0000 001
Q ss_pred chHHHHHHHhcCCeEEEEe------eHH---------HHHHHHHh---CCC-cEEEEEeCCCHHHHHHHHHHcCCCCHHH
Q psy11425 206 SFFPIVREIKSNVDILLEI------DFQ---------GAKQIKKK---FPN-AIGIFILPPSLDSLKERLYKRGQDKYDV 266 (672)
Q Consensus 206 ~~~~I~~~l~~G~~vIldi------~~~---------g~~~l~~~---~~~-~~vIfI~~ps~e~l~~RL~~Rg~~~~e~ 266 (672)
....|...+.+|.+||+|= -++ .+..+... .+. ..+||++.| +++..+|...+++....+
T Consensus 71 ~~~~I~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~-~e~~~~R~~~~dr~e~~e 149 (197)
T 3hjn_A 71 LVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVD-VETALKRKGELNRFEKRE 149 (197)
T ss_dssp HHHHHHHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHC---CTTCCHH
T ss_pred HHHHHHHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcC-hHHHHHhCcCcCccccHH
Confidence 1345667788899999882 111 12222221 122 346777766 888888877766543344
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 267 ISRRILSANKEISYANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 267 i~~rl~~~~~e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
...++.....++.....-.++++|. ++++..++|.+.|++
T Consensus 150 f~~rv~~~y~~la~~~~~~~~~IDa~~~~eeV~~~I~~~i~~ 191 (197)
T 3hjn_A 150 FLERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKR 191 (197)
T ss_dssp HHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4455544433332222223555554 599999999888853
No 111
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.37 E-value=1.4e-06 Score=84.07 Aligned_cols=26 Identities=35% Similarity=0.627 Sum_probs=23.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
|+.+|+|+||+||||||+++.|....
T Consensus 1 mg~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 1 MKKLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCcHHHHHHHHhccc
Confidence 46799999999999999999998754
No 112
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.37 E-value=6.9e-07 Score=87.70 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=23.5
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+|+|+||+|||||||++.|....
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998864
No 113
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.37 E-value=1e-06 Score=84.35 Aligned_cols=65 Identities=12% Similarity=0.162 Sum_probs=39.2
Q ss_pred cEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH---HHhhhcCCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 239 AIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSAN---KEISYANKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 239 ~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl~~~~---~e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
..+||+.+| ++++.+|+..|. ..+....++..+. ........+|++|.|+ +++++..+|.+++..
T Consensus 106 ~~~i~l~~~-~e~~~~R~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ad~vid~~~~~~~~~~~~i~~~l~~ 175 (179)
T 2pez_A 106 FFEVFVDAP-LHVCEQRDVKGL--YKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQE 175 (179)
T ss_dssp EEEEEEECC-HHHHHHHCTTSH--HHHHHTTSSCSCBTTTBCCCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCC-HHHHHHHHhhhh--HHHHhcccccccccCCccccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 367888876 999999976431 0111111111110 0011124689999987 599999999998864
No 114
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.37 E-value=4.1e-08 Score=103.82 Aligned_cols=92 Identities=15% Similarity=0.054 Sum_probs=65.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceee---------cccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhH
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLS---------ISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEW 195 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~---------v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~ 195 (672)
.|+++|+|+||+|||||||+..|.+..+...+. .+.+|++|++.|..|..|||++...|......+.|.++
T Consensus 3 ~m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~ 82 (323)
T 3crm_A 3 SLPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRAD 82 (323)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHH
Confidence 466799999999999999999999886422222 25688999999999999999876554333222333333
Q ss_pred HhHhccccCcchHHHHHHHhcCCeEEEEeeH
Q psy11425 196 AEVHGNFYGTSFFPIVREIKSNVDILLEIDF 226 (672)
Q Consensus 196 ~~~~g~~YGt~~~~I~~~l~~G~~vIldi~~ 226 (672)
. ...+..+...|+.+|+.+-.
T Consensus 83 a----------~~~i~~i~~~g~~~IlvGGt 103 (323)
T 3crm_A 83 A----------LAAMAKATARGRIPLLVGGT 103 (323)
T ss_dssp H----------HHHHHHHHHTTCEEEEEESC
T ss_pred H----------HHHHHHHHHcCCeEEEECCc
Confidence 2 34566677788888877633
No 115
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.35 E-value=4.6e-07 Score=96.40 Aligned_cols=118 Identities=16% Similarity=0.033 Sum_probs=70.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCC---------ceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHH
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHK---------IKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWA 196 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~---------~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~ 196 (672)
|+++|+|+||+|||||||+..|.+..+. ++...+.+|++|+..|..|..|||++...+...+....|.++
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~- 84 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKR- 84 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHH-
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHH-
Confidence 4579999999999999999999988641 234456788999999999999998765443322111222222
Q ss_pred hHhccccCcchHHHHHHHhcCCeEEEEe-eHHHHHHHHHhCCCcEEEEEeCCCHHH---HHHHHH
Q psy11425 197 EVHGNFYGTSFFPIVREIKSNVDILLEI-DFQGAKQIKKKFPNAIGIFILPPSLDS---LKERLY 257 (672)
Q Consensus 197 ~~~g~~YGt~~~~I~~~l~~G~~vIldi-~~~g~~~l~~~~~~~~vIfI~~ps~e~---l~~RL~ 257 (672)
....+......|+.+|+.+ ..-.+..+.. ..+ +|..+.+.+. +.+|+.
T Consensus 85 ---------a~~~i~~i~~~g~~~IlvGGt~ly~~~l~~-~l~---~~~~~~d~~~~~Rlrrrl~ 136 (340)
T 3d3q_A 85 ---------AEKYIKDITRRGKVPIIAGGTGLYIQSLLY-NYA---FEDESISEDKMKQVKLKLK 136 (340)
T ss_dssp ---------HHHHHHHHHHTTCEEEEECCCHHHHHHHHB-CSC---CC---CCHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhCCCcEEEECChhhhHHHHHh-ccc---ccCCCCChHHHHHHHHHHH
Confidence 1334445566777766654 4433333332 222 4555123542 555654
No 116
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.31 E-value=1.1e-05 Score=80.81 Aligned_cols=165 Identities=19% Similarity=0.168 Sum_probs=83.8
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGT 205 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt 205 (672)
.+..|+|+|++||||||+++.|.+.+...++......|...++ +.. .-......+..|..+... .
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~---~~~----~g~~i~~~~~~g~~~~~~--------~ 79 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVAS---GSE----LGKKLKATMDAGKLVSDE--------M 79 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHH---TCH----HHHHHHHHHHTTCCCCHH--------H
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHc---CCh----hHHHHHHHHHCCCcCCHH--------H
Confidence 3468999999999999999999887521111111111110000 000 001111112222211100 0
Q ss_pred chHHHHHHHh---cCCeEEEEeeHHH------HHHH-HHhCC-CcEEEEEeCCCHHHHHHHHHHcC--------------
Q psy11425 206 SFFPIVREIK---SNVDILLEIDFQG------AKQI-KKKFP-NAIGIFILPPSLDSLKERLYKRG-------------- 260 (672)
Q Consensus 206 ~~~~I~~~l~---~G~~vIldi~~~g------~~~l-~~~~~-~~~vIfI~~ps~e~l~~RL~~Rg-------------- 260 (672)
....+...+. .+..+|+|.-+.. +..+ ..... ...+||+..| ++++.+|+..|.
T Consensus 80 ~~~~i~~~l~~~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~-~e~~~~Rl~~R~~~~~~g~~y~~~~~ 158 (233)
T 1ak2_A 80 VLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIP-DSLLIRRITGRLIHPQSGRSYHEEFN 158 (233)
T ss_dssp HHHHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECC-HHHHHHHHHTCEECTTTCCEEBTTTB
T ss_pred HHHHHHHHHhcccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCcCCccCCccccccC
Confidence 0111222222 2345777753322 2222 22222 3467888876 999999998762
Q ss_pred -------------------CCCHHHHHHHHHHHHHH----h-hhcC-CCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 261 -------------------QDKYDVISRRILSANKE----I-SYAN-KFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 261 -------------------~~~~e~i~~rl~~~~~e----~-~~~~-~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
+++.+.+.+|+..+... . .|.. ...++|..+ ++++.+++|.++|..
T Consensus 159 pp~~~~~~~~~~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~ 230 (233)
T 1ak2_A 159 PPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSK 230 (233)
T ss_dssp CCSSTTBCTTTCCBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred CCccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 13456677787654332 1 2221 234556555 599999999988864
No 117
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.30 E-value=1.2e-06 Score=88.30 Aligned_cols=162 Identities=18% Similarity=0.135 Sum_probs=78.9
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchH
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFF 208 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~ 208 (672)
-++|+|||||||||+++.|.+.+...+.+.....|..-.. |.. .-......+..|.++.... ...
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~---~t~----lG~~i~~~~~~G~lvpdei--------~~~ 74 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKA---GTP----LGVEAKTYMDEGKLVPDSL--------IIG 74 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHT---TCH----HHHHHHHHHTTTCCCCHHH--------HHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccC---CCh----HHHHHHHHHhhccccccHH--------HHH
Confidence 5899999999999999999887522222322222221000 000 0011222233333322110 011
Q ss_pred HHHHHHhc---CCeEEEEeeHHHHHH---HHHhCC-CcEEEEEeCCCHHHHHHHHHHcC---------------------
Q psy11425 209 PIVREIKS---NVDILLEIDFQGAKQ---IKKKFP-NAIGIFILPPSLDSLKERLYKRG--------------------- 260 (672)
Q Consensus 209 ~I~~~l~~---G~~vIldi~~~g~~~---l~~~~~-~~~vIfI~~ps~e~l~~RL~~Rg--------------------- 260 (672)
-+...+.+ +.-.|+|+-|..+.+ +.+... -..+|++..| .+++.+|+..|.
T Consensus 75 ll~~~l~~~~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp-~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~ 153 (230)
T 3gmt_A 75 LVKERLKEADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVP-FSEIIERMSGRRTHPASGRTYHVKFNPPKVEGK 153 (230)
T ss_dssp HHHHHHHSGGGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCC-HHHHHHHHHTEEEETTTTEEEETTTBCCSSTTB
T ss_pred HHHHHHhCcccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCC-HHHHHHHHHcCCcccccCCcccccCCCCCccCc
Confidence 22222322 345788986654433 333332 2457888876 999999999873
Q ss_pred ------------CCCHHHHHHHHHHHHHHh----hhcCC------------CcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 261 ------------QDKYDVISRRILSANKEI----SYANK------------FDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 261 ------------~~~~e~i~~rl~~~~~e~----~~~~~------------~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
+++++.+++|+..+..+. .|... --++.+|. ++++.+++|.+++.+
T Consensus 154 ~d~~g~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~ 229 (230)
T 3gmt_A 154 DDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS 229 (230)
T ss_dssp CTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC-----------------
T ss_pred CCCccCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 246789999998875432 33221 23555555 489999999887754
No 118
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.28 E-value=1.3e-06 Score=87.65 Aligned_cols=67 Identities=6% Similarity=0.090 Sum_probs=33.2
Q ss_pred cEEEEEeCCCHHHHHHHHHHcCCCCH----HHHHHHHHHHHHHh--hh--cCCCc-EEEEcC-CHHHHHHHHHHHHHh
Q psy11425 239 AIGIFILPPSLDSLKERLYKRGQDKY----DVISRRILSANKEI--SY--ANKFD-YIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 239 ~~vIfI~~ps~e~l~~RL~~Rg~~~~----e~i~~rl~~~~~e~--~~--~~~~D-~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
..+||+++| ++++.+|+..|++..+ ....+++..+..+. .| ....+ ++|.|+ ++++..++|.+++..
T Consensus 148 D~vi~Ld~~-~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~~ 224 (230)
T 2vp4_A 148 DLIIYLRTS-PEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESS 224 (230)
T ss_dssp SEEEEEECC-HHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC---------------
T ss_pred CEEEEEeCC-HHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 357889877 9999999998875322 14566676665544 22 23444 566666 599999999888754
No 119
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.27 E-value=3.7e-07 Score=95.95 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=39.6
Q ss_pred cEEEEEeCCCHHHHHHHHHHcC-------------------CCCHHHHHHHHHHHHHH----------hhhcCCCcEEEE
Q psy11425 239 AIGIFILPPSLDSLKERLYKRG-------------------QDKYDVISRRILSANKE----------ISYANKFDYIII 289 (672)
Q Consensus 239 ~~vIfI~~ps~e~l~~RL~~Rg-------------------~~~~e~i~~rl~~~~~e----------~~~~~~~D~VI~ 289 (672)
..+|||.+| .+++.+|+.+|. ..+.+++.+++.+++.. ..+...+|+||.
T Consensus 216 D~~i~V~~~-~~~~~~R~~~R~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~ 294 (308)
T 1sq5_A 216 DFSIYVDAP-EDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILT 294 (308)
T ss_dssp SEEEEEECC-HHHHHHHHHHHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEE
T ss_pred CEEEEEECC-HHHHHHHHHHHHHHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEE
Confidence 457999987 788888888773 45778888888876542 345578999999
Q ss_pred cC
Q psy11425 290 NN 291 (672)
Q Consensus 290 Nd 291 (672)
|+
T Consensus 295 n~ 296 (308)
T 1sq5_A 295 KS 296 (308)
T ss_dssp EC
T ss_pred eC
Confidence 87
No 120
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.26 E-value=1.4e-06 Score=83.89 Aligned_cols=159 Identities=11% Similarity=0.096 Sum_probs=78.3
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhcCC--C--ceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhH
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKKDH--K--IKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEV 198 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~--~--~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~ 198 (672)
..+++.+|+|+|++||||||+++.|.+... + +.+......|..-. +. ..|. ..+...
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~----~~-~~~~-~~~r~~------------- 69 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVS----EG-AGFT-REERLR------------- 69 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTT----TT-CCCC-HHHHHH-------------
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHh----hc-cCCC-hhhHHH-------------
Confidence 345678999999999999999999987642 1 22221122221111 10 0111 111000
Q ss_pred hccccCcchHHHHHHHhcCCeEEEEeeH--HH----HHHHHHhC-CCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHH
Q psy11425 199 HGNFYGTSFFPIVREIKSNVDILLEIDF--QG----AKQIKKKF-PNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRI 271 (672)
Q Consensus 199 ~g~~YGt~~~~I~~~l~~G~~vIldi~~--~g----~~~l~~~~-~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl 271 (672)
.+.............|..++++... +. +..+.... ....+||+++| ++++.+|+..+.. .......+
T Consensus 70 ---~~~~~~~~~~~~~~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~-~e~~~~R~~~~~~--~~~~~~~~ 143 (186)
T 2yvu_A 70 ---HLKRIAWIARLLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKAS-LEEVIRRDPKGLY--KKALKGEL 143 (186)
T ss_dssp ---HHHHHHHHHHHHHTTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECC-HHHHHHHCHHHHH--HHHHTTCC
T ss_pred ---HHHHHHHHHHHHHhCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCC-HHHHHHhhhhhhh--hHHhhcch
Confidence 0000011112234567777777532 11 22222222 23467888876 8999888743200 00000000
Q ss_pred HHHH-HHhhhc--CCCcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 272 LSAN-KEISYA--NKFDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 272 ~~~~-~e~~~~--~~~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
.... ....|. ...|++|.++ +++++.++|.+.|..
T Consensus 144 ~~~~~~~~~y~~~~~~~~~Id~~~~~~~ev~~~I~~~l~~ 183 (186)
T 2yvu_A 144 ENFTGITDPYEPPENPQLVLDTESNTIEHNVSYLYSLVKA 183 (186)
T ss_dssp SSCHHHHSCCCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 0000 011232 3578999886 589999999888753
No 121
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.25 E-value=4.8e-06 Score=82.40 Aligned_cols=86 Identities=10% Similarity=0.159 Sum_probs=47.6
Q ss_pred cCCeEEEEeeHHHHHHHHHhCC-CcEEEEEeCCCHHHHHHH----HHHcCCC-CHHHHHHHHHH----HHH-H-hhhcCC
Q psy11425 216 SNVDILLEIDFQGAKQIKKKFP-NAIGIFILPPSLDSLKER----LYKRGQD-KYDVISRRILS----ANK-E-ISYANK 283 (672)
Q Consensus 216 ~G~~vIldi~~~g~~~l~~~~~-~~~vIfI~~ps~e~l~~R----L~~Rg~~-~~e~i~~rl~~----~~~-e-~~~~~~ 283 (672)
.+..+++++..-. . ...+ ..++||+.+| .+++.+| +..|+.. +.+.....+.. +.. + ......
T Consensus 122 ~~~~~vldg~~~~-~---~~~~~~d~~i~l~~~-~e~~~~R~~~~l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~ 196 (227)
T 1cke_A 122 ELPGLIADGRDMG-T---VVFPDAPVKIFLDAS-SEERAHRRMLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPA 196 (227)
T ss_dssp CTTCEEEEESSCC-C---CCCTTCSEEEEEECC-HHHHHHHHHHHHHHHTCCCCHHHHHHHHC-------------CCCC
T ss_pred hCCCEEEECCCcc-c---eEecCCCEEEEEeCC-HHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCC
Confidence 3566788864111 0 0111 3567899987 7888888 4456642 34444444432 221 1 122222
Q ss_pred -CcEEEEcC--CHHHHHHHHHHHHHh
Q psy11425 284 -FDYIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 284 -~D~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
.+++|.|+ +++++.++|.+++..
T Consensus 197 ~~~~~Id~~~~~~~ev~~~I~~~l~~ 222 (227)
T 1cke_A 197 ADALVLDSTTLSIEQVIEKALQYARQ 222 (227)
T ss_dssp TTCEEEETTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 23888887 599999999988854
No 122
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.25 E-value=8.1e-07 Score=87.67 Aligned_cols=156 Identities=13% Similarity=0.039 Sum_probs=80.3
Q ss_pred cccccceEEEEeCCCCCChHHHHHHHHhcCC---C--ceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHH
Q psy11425 122 SFKSFGNIFIISAPSGAGKSTLVNELLKKDH---K--IKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWA 196 (672)
Q Consensus 122 ~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~---~--~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~ 196 (672)
....++.+|+|+|++||||||+++.|.+..+ + +.+......|..... +..| + ....
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~---~~~~-~---------------~~~r 80 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNK---DLGF-S---------------EADR 80 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTT---TCCS-S---------------HHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhcc---ccCC-C---------------HHHH
Confidence 3455678999999999999999999987642 1 222221222211100 0011 0 0000
Q ss_pred hHhccccCcchHHHHHHHhcCCeEEEEee------HHHHHHHHHh------CCC-cEEEEEeCCCHHHHHHHHHHcCCCC
Q psy11425 197 EVHGNFYGTSFFPIVREIKSNVDILLEID------FQGAKQIKKK------FPN-AIGIFILPPSLDSLKERLYKRGQDK 263 (672)
Q Consensus 197 ~~~g~~YGt~~~~I~~~l~~G~~vIldi~------~~g~~~l~~~------~~~-~~vIfI~~ps~e~l~~RL~~Rg~~~ 263 (672)
...|......+...+..|..||++.. ...+..+... .+. ..+||+++| ++++.+|+ .|.
T Consensus 81 ---~~~~~~~~~~~~~~l~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~-~e~~~~R~-~r~--- 152 (211)
T 1m7g_A 81 ---NENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVP-VEVAEQRD-PKG--- 152 (211)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECC-HHHHHTSC-TTC---
T ss_pred ---HHHHHHHHHHHHHHHHCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCC-HHHHHHhh-hHH---
Confidence 00010011223345667888888842 1112222221 111 467888876 88988885 110
Q ss_pred HHHHHHHHHHHH------HHhhhc--CCCcEEEEcC--CHHHHHHHHHHHHHhc
Q psy11425 264 YDVISRRILSAN------KEISYA--NKFDYIIINN--KFSKALLQLKAIINAN 307 (672)
Q Consensus 264 ~e~i~~rl~~~~------~e~~~~--~~~D~VI~Nd--dle~a~~qL~~iI~~~ 307 (672)
...+..... ....|. ..++++|.++ +++++.++|.+++...
T Consensus 153 ---~~~~~r~~~~~~~~~~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~~ 203 (211)
T 1m7g_A 153 ---LYKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDTK 203 (211)
T ss_dssp ---HHHHHHHTSSSSCBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHhcchhhhhhhhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHHHc
Confidence 011111100 001122 2468888887 5999999999988753
No 123
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.20 E-value=7.2e-07 Score=87.91 Aligned_cols=70 Identities=14% Similarity=0.058 Sum_probs=43.8
Q ss_pred CeEEEEeeHHHH-----HHHHHhCCCcEEEEEeCCCHHHHHHHHHHcC---CCCHHHHHHHHHH-HHH----HhhhcCCC
Q psy11425 218 VDILLEIDFQGA-----KQIKKKFPNAIGIFILPPSLDSLKERLYKRG---QDKYDVISRRILS-ANK----EISYANKF 284 (672)
Q Consensus 218 ~~vIldi~~~g~-----~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg---~~~~e~i~~rl~~-~~~----e~~~~~~~ 284 (672)
+.+++++.+..+ ..+.. . ...+|||++| .+++.+|+.+|. ..+.+++..++.. +.. ...+...+
T Consensus 125 ~~~i~eg~~~l~de~~~~~l~~-~-~d~~i~vd~~-~~~~~~R~~~R~~~~g~t~~~~~~~~~~~~~~~~~~i~~~~~~a 201 (208)
T 3c8u_A 125 RVAIIEGNYLLFDAPGWRDLTA-I-WDVSIRLEVP-MADLEARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPA 201 (208)
T ss_dssp CEEEEEESSTTBCSTTGGGGGG-T-CSEEEEECCC-HHHHHHHHHHHHHHTTCCHHHHHHHHHTHHHHHHHHHHTTBCCC
T ss_pred cEEEECCceeccCCchhHHHHH-h-cCEEEEEeCC-HHHHHHHHHHHHHhcCCCHHHHHHHHHhccHHHHHHHHhCCCCC
Confidence 567777644322 12221 2 3457999987 788778887762 3466777777764 555 34567889
Q ss_pred cEEEEc
Q psy11425 285 DYIIIN 290 (672)
Q Consensus 285 D~VI~N 290 (672)
|+||.+
T Consensus 202 D~vi~~ 207 (208)
T 3c8u_A 202 DLTWPQ 207 (208)
T ss_dssp SEEEC-
T ss_pred CEEeeC
Confidence 999854
No 124
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.18 E-value=3.4e-06 Score=84.23 Aligned_cols=166 Identities=11% Similarity=0.137 Sum_probs=89.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCC--chhHHh---Hhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGK--FLEWAE---VHG 200 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~--fle~~~---~~g 200 (672)
++++|+|.|++||||||+++.|.+.... ....+|.|..+..-| +.....+..+. +-.+.+ |..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~----~~~~~~ep~~~t~~g--------~~ir~~l~~~~~~~~~~~~~llf~a 71 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP----NCKLLKFPERSTRIG--------GLINEYLTDDSFQLSDQAIHLLFSA 71 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS----SEEEEESSCTTSHHH--------HHHHHHHHCTTSCCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc----cceEEEecCCCChHH--------HHHHHHHHhcccCCCHHHHHHHHHH
Confidence 4789999999999999999999988643 113445542111111 11222222221 111111 111
Q ss_pred cccCcchHHHHHHHhcCCeEEEEe------eHHH--------HHHHHH---hCCC-cEEEEE-eCCCHHHHHHHHHHcCC
Q psy11425 201 NFYGTSFFPIVREIKSNVDILLEI------DFQG--------AKQIKK---KFPN-AIGIFI-LPPSLDSLKERLYKRGQ 261 (672)
Q Consensus 201 ~~YGt~~~~I~~~l~~G~~vIldi------~~~g--------~~~l~~---~~~~-~~vIfI-~~ps~e~l~~RL~~Rg~ 261 (672)
..+. ....|...+++|.+||+|= -+++ +..+.. ..+. ..+||+ +.| +++..+|+..+++
T Consensus 72 ~R~~-~~~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~-pe~~~~R~~~~~d 149 (216)
T 3tmk_A 72 NRWE-IVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQD-VDNNAEKSGFGDE 149 (216)
T ss_dssp HHHT-THHHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSC-CSCGGGCCSSSCC
T ss_pred HHHH-HHHHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCC-HHHHHHHhccCcc
Confidence 1222 2456777888999999982 1122 111221 1122 356777 766 7777777654322
Q ss_pred --CCHHHHHHHHHHHHHHhhhc----CCCcEEEEc-C--CHHHHHHHHHHHHHh
Q psy11425 262 --DKYDVISRRILSANKEISYA----NKFDYIIIN-N--KFSKALLQLKAIINA 306 (672)
Q Consensus 262 --~~~e~i~~rl~~~~~e~~~~----~~~D~VI~N-d--dle~a~~qL~~iI~~ 306 (672)
++ .+..+++.....++... ....++++| . ++++..++|.++|..
T Consensus 150 r~E~-~~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~ 202 (216)
T 3tmk_A 150 RYET-VKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEP 202 (216)
T ss_dssp TTCC-HHHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred cccH-HHHHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 22 33444444433333211 233455555 3 699999999888865
No 125
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.17 E-value=1.6e-05 Score=80.36 Aligned_cols=89 Identities=16% Similarity=0.117 Sum_probs=49.2
Q ss_pred CCeEEEEeeHHHH-HHHHHhCCCcEEEEEeCCCHHHHHHHHHHcC---CCCHHHHHHHHHHHH-HH-----hhhcCCCcE
Q psy11425 217 NVDILLEIDFQGA-KQIKKKFPNAIGIFILPPSLDSLKERLYKRG---QDKYDVISRRILSAN-KE-----ISYANKFDY 286 (672)
Q Consensus 217 G~~vIldi~~~g~-~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg---~~~~e~i~~rl~~~~-~e-----~~~~~~~D~ 286 (672)
.+.+|+|.-.... ..+.. . ....||+.++ .+....|...|. ..+.+++..++..+. .. ......+|+
T Consensus 134 ~~~lilDg~~~~~~~~l~~-~-~~~~i~v~th-~~~~~~r~~~r~~~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~ 210 (245)
T 2jeo_A 134 ADVVLFEGILVFYSQEIRD-M-FHLRLFVDTD-SDVRLSRRVLRDVRRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADV 210 (245)
T ss_dssp CSEEEEECTTTTTSHHHHT-T-CSEEEEEECC-HHHHHHHHHHHHTC---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSE
T ss_pred CCEEEEeCccccccHHHHH-h-cCeEEEEECC-HHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceE
Confidence 3567777522221 22322 2 2456888877 444444444442 235666666555421 11 134568999
Q ss_pred EE----EcC-CHHHHHHHHHHHHHhcc
Q psy11425 287 II----INN-KFSKALLQLKAIINANR 308 (672)
Q Consensus 287 VI----~Nd-dle~a~~qL~~iI~~~~ 308 (672)
|| .|+ +++++.+++.+++....
T Consensus 211 vi~~~~dn~~~~~~l~~~i~~~~~~~~ 237 (245)
T 2jeo_A 211 IIPRGVDNMVAINLIVQHIQDILNGDI 237 (245)
T ss_dssp EEESSTTCHHHHHHHHHHHHHHHHTCC
T ss_pred EEcCCCCccHHHHHHHHHHHHHHhcch
Confidence 99 343 48899999988886543
No 126
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.16 E-value=2.6e-06 Score=83.21 Aligned_cols=154 Identities=12% Similarity=0.063 Sum_probs=78.9
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCC--Cce--eecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHh
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDH--KIK--LSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVH 199 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~--~~~--~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~ 199 (672)
..++.+|+|+|||||||||+++.|....+ +.. +......+.. -..+.. | +.+.+...+
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~---~~~~~~--~-~~~~~~~~~------------ 83 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHG---LNRDLS--F-KAEDRAENI------------ 83 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTT---TTTTCC--S-SHHHHHHHH------------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhH---hhcccC--c-ChHHHHHHH------------
Confidence 35678999999999999999999987642 221 2222211111 001111 1 122211110
Q ss_pred ccccCcchHHHHHHHhcCCeEEEEee---HHHHHHHHHhCC--CcEEEEEeCCCHHHHHHHH------HHcCCCCHHHHH
Q psy11425 200 GNFYGTSFFPIVREIKSNVDILLEID---FQGAKQIKKKFP--NAIGIFILPPSLDSLKERL------YKRGQDKYDVIS 268 (672)
Q Consensus 200 g~~YGt~~~~I~~~l~~G~~vIldi~---~~g~~~l~~~~~--~~~vIfI~~ps~e~l~~RL------~~Rg~~~~e~i~ 268 (672)
.............|..++.... +.....++.... ....||+.+| ++++.+|+ ..|.......
T Consensus 84 ----~~~~~~~~~~~~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~-~e~~~~R~~~~l~~~~r~~~~~~~-- 156 (200)
T 3uie_A 84 ----RRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVP-LSVCEARDPKGLYKLARAGKIKGF-- 156 (200)
T ss_dssp ----HHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCC-HHHHHHHCTTSHHHHHHTTSSCSC--
T ss_pred ----HHHHHHHHHHHhCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCC-HHHHHHhcccchHHHHhcCCCCCC--
Confidence 0001122233445666665532 122233444333 3456888876 99998886 2222110000
Q ss_pred HHHHHHHHHhhhc--CCCcEEEEcC---CHHHHHHHHHHHHHhc
Q psy11425 269 RRILSANKEISYA--NKFDYIIINN---KFSKALLQLKAIINAN 307 (672)
Q Consensus 269 ~rl~~~~~e~~~~--~~~D~VI~Nd---dle~a~~qL~~iI~~~ 307 (672)
......|. ...|++|.++ ++++++.+|.+.|...
T Consensus 157 -----~~~~~~~~~~~~~~~~idt~~~~~~~e~v~~i~~~l~~~ 195 (200)
T 3uie_A 157 -----TGIDDPYEPPLNCEISLGREGGTSPIEMAEKVVGYLDNK 195 (200)
T ss_dssp -----BTTTBCCCCCSSCSEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred -----CCCCCcCcCCCCCCEEEecCCCCCHHHHHHHHHHHHHHc
Confidence 00011232 2467888764 5899999999988653
No 127
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.16 E-value=6.1e-06 Score=83.36 Aligned_cols=84 Identities=13% Similarity=0.200 Sum_probs=49.3
Q ss_pred CeEEEEeeHHHHHHHHHhCC-CcEEEEEeCCCHHHHHHHHHH-----cCCCCHHHHHHHHHHH-HHHhh-hc---CCCc-
Q psy11425 218 VDILLEIDFQGAKQIKKKFP-NAIGIFILPPSLDSLKERLYK-----RGQDKYDVISRRILSA-NKEIS-YA---NKFD- 285 (672)
Q Consensus 218 ~~vIldi~~~g~~~l~~~~~-~~~vIfI~~ps~e~l~~RL~~-----Rg~~~~e~i~~rl~~~-~~e~~-~~---~~~D- 285 (672)
..||+++--.+.. .++ .++-|||.++ .+++.+|..+ +...+.+.+...+... ..+.. +. ..+|
T Consensus 129 ~~~V~~GRd~gt~----V~pda~lkifl~A~-~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~d 203 (233)
T 3r20_A 129 GRVVVEGRDIGTV----VLPDADVKIFLTAS-AEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADD 203 (233)
T ss_dssp SCEEEEESSCCCC----CCTTCSEEEEEECC-HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTT
T ss_pred CcEEEecccceeE----EcCCCCEEEEEECC-HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccC
Confidence 5678876322210 112 2467999986 8888777664 3345666666665443 33321 22 2344
Q ss_pred -EEEEcC--CHHHHHHHHHHHHHh
Q psy11425 286 -YIIINN--KFSKALLQLKAIINA 306 (672)
Q Consensus 286 -~VI~Nd--dle~a~~qL~~iI~~ 306 (672)
++|.++ +++++.+.|..+++.
T Consensus 204 al~IDTs~l~iee~v~~I~~~i~~ 227 (233)
T 3r20_A 204 ALVVDTSDMDQAQVIAHLLDLVTA 227 (233)
T ss_dssp SEEEECTTSCHHHHHHHHHHHC--
T ss_pred cEEEECCCCCHHHHHHHHHHHHHH
Confidence 677666 499999999888753
No 128
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.15 E-value=8.3e-06 Score=82.90 Aligned_cols=119 Identities=17% Similarity=0.108 Sum_probs=63.8
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC-CceeecccccccCCCCCC-CCcccccCCHHHHHHHHHcCCchhHHhHhccc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEK-NGREYYFTNIDNFKKLQKSGKFLEWAEVHGNF 202 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~-~~~~~v~~TTR~~r~~E~-~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~ 202 (672)
.++.+|+|+|+|||||||+++.|.+..+ .+.+...+.-|...+... -...+-+...+.+.. +.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~------------~~~~~ 97 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKD------------FAGKM 97 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHH------------HHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhH------------HHHHH
Confidence 4578999999999999999999988764 344444444433211100 000011111111110 00000
Q ss_pred cCcchHHHHHHHhcCCeEEEEeeHHHH-------HHHHHhCCCcEEEEEeCCCHHHHHHHHHHc
Q psy11425 203 YGTSFFPIVREIKSNVDILLEIDFQGA-------KQIKKKFPNAIGIFILPPSLDSLKERLYKR 259 (672)
Q Consensus 203 YGt~~~~I~~~l~~G~~vIldi~~~g~-------~~l~~~~~~~~vIfI~~ps~e~l~~RL~~R 259 (672)
. ...+...+..|..+|++..+... ..++.......++|+.+ +++++.+|+..|
T Consensus 98 ~---~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~-~~e~~~~R~~~R 157 (253)
T 2p5t_B 98 V---ESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIAT-KPELSYLSTLIR 157 (253)
T ss_dssp H---HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECC-CHHHHHHHHHHH
T ss_pred H---HHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeC-CHHHHHHHHHHH
Confidence 0 12334455667788999765422 22333333445567776 489999998766
No 129
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.14 E-value=1.2e-06 Score=86.50 Aligned_cols=164 Identities=15% Similarity=0.175 Sum_probs=85.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc-CC-Cc-eeecccccccCCCCCCCCcccccC-----CHHHHHHHHHcCCchhHHh
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK-DH-KI-KLSISTTTRPMRPGEKNGREYYFT-----NIDNFKKLQKSGKFLEWAE 197 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~-~~-~~-~~~v~~TTR~~r~~E~~G~dY~fv-----s~~~F~~~i~~g~fle~~~ 197 (672)
+.++|+|+|.+||||+|+++.|.+. +. .+ .+..+..+|.... ...|.++... -++.+... +..|++
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a-~~~gl~~~~~l~~~~ykE~~R~~-----m~~~g~ 83 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYA-QEHGLNFQRLLDTSTYKEAFRKD-----MIRWGE 83 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHH-HTTTCCCC-------CCSSHHHH-----HHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHH-HHcCCCchhhcchhhhHHHHHHH-----HHHHHH
Confidence 4579999999999999999999884 21 12 1333343331000 0111111110 00011111 122322
Q ss_pred Hhcc-ccCcchHHHHHHHhc--CCeEEEEe--eHHHHHHHHHhCCC-cEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHH
Q psy11425 198 VHGN-FYGTSFFPIVREIKS--NVDILLEI--DFQGAKQIKKKFPN-AIGIFILPPSLDSLKERLYKRGQDKYDVISRRI 271 (672)
Q Consensus 198 ~~g~-~YGt~~~~I~~~l~~--G~~vIldi--~~~g~~~l~~~~~~-~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~~rl 271 (672)
--.. -++.. +...+.. ..++|++. .+.-+..+++.++. .++|.|.++ ++++.+|...+....++.
T Consensus 84 ~~R~~d~~~~---~~~~~~~~~~~~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as-~~~R~~Rg~~~~~~~Dd~----- 154 (202)
T 3ch4_B 84 EKRQADPGFF---CRKIVEGISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVAL-EQSRQQRGWVFTPGVDDA----- 154 (202)
T ss_dssp HHHHHCTTTT---HHHHSBTCCCSEEEECCCCSHHHHHHHHHHHGGGEEEEEEEEC-HHHHHHTTCCCCTTTTTS-----
T ss_pred HHHhcCchHH---HHHHHHhcCCCcEEEeCCCCHHHHHHHHHhCCCcEEEEEEECC-HHHHHHHhhhcccccccc-----
Confidence 1111 11111 1122221 23455554 44455667766553 667888876 999988854332211111
Q ss_pred HHHHHHhhhc--CCCcEEEEcC-CHHHHHHHHHHHHHhc
Q psy11425 272 LSANKEISYA--NKFDYIIINN-KFSKALLQLKAIINAN 307 (672)
Q Consensus 272 ~~~~~e~~~~--~~~D~VI~Nd-dle~a~~qL~~iI~~~ 307 (672)
..+.... ..+||+|.|| ++++...+|..++...
T Consensus 155 ---esE~gL~~~~~~D~vI~Ndgt~eel~~~v~~ll~~~ 190 (202)
T 3ch4_B 155 ---ESECGLDNFGDFDWVIENHGVEQRLEEQLENLIEFI 190 (202)
T ss_dssp ---HHHHTTTTCCCCSEEEEECSCHHHHHHHHHHHHHHH
T ss_pred ---ccccCCCCCCcCCEEEEeCCCHHHHHHHHHHHHHHH
Confidence 1133222 4799999999 5999999999888654
No 130
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.14 E-value=1.1e-06 Score=99.92 Aligned_cols=200 Identities=14% Similarity=0.137 Sum_probs=99.2
Q ss_pred cccCCCCCcCccCCcchhhhhhhCCCccch----hHHhh----------------h-hhhhhcc--ccccceEEEEeCCC
Q psy11425 80 IDKKEYGWCKDTGEPIGILRLLAKPMATLS----LEAQQ----------------R-HELKKKS--FKSFGNIFIISAPS 136 (672)
Q Consensus 80 i~~gtyG~C~~Cge~Ip~~RL~a~P~a~~C----~~c~~----------------~-~E~~~r~--~~~~~kiIvLtGps 136 (672)
+.-..|-+|..||.-|+..+.-. .+..+ ..-.. . .+.+... ...++.+|+|+|+|
T Consensus 328 v~fd~~~y~~~~g~~i~id~~~~--~~~~~~iSgt~ir~~l~~g~~~p~w~~~~eVsr~lRe~~~~~gq~~~~I~l~Gls 405 (573)
T 1m8p_A 328 VEFQMVTYLPDTDEYRPVDQVPA--GVKTLNISGTELRRRLRSGAHIPEWFSYPEVVKILRESNPPRATQGFTIFLTGYM 405 (573)
T ss_dssp EECCCCCBBTTTTBCCCSSSSCT--TSCCBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHHTTSCCTTTCCEEEEEECST
T ss_pred EeccceEEEcCCCcEEecccCCC--CceeecCChHHHHHHHhccCCCCcccccccccHHHHHhcccccccceEEEeecCC
Confidence 44578999999999888775432 11122 00000 0 0111111 22456799999999
Q ss_pred CCChHHHHHHHHhcCC-----CceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhccccCcchHHHH
Q psy11425 137 GAGKSTLVNELLKKDH-----KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIV 211 (672)
Q Consensus 137 GSGKSTLa~~L~e~~~-----~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~~YGt~~~~I~ 211 (672)
||||||+++.|.+... .+.+......|.. ..+. ..|...+. . ++ +......+.
T Consensus 406 GSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~----l~~~-~~f~~~er-~---------~~-------i~ri~~v~~ 463 (573)
T 1m8p_A 406 NSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHE----LSSE-LGFTREDR-H---------TN-------IQRIAFVAT 463 (573)
T ss_dssp TSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHH----TCTT-CCCSHHHH-H---------HH-------HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcccCCceEEEECcHHHHHH----hccc-cCCChhHH-H---------HH-------HHHHHHHHH
Confidence 9999999999988742 1222211221111 0111 11111000 0 00 000012334
Q ss_pred HHHhcCCeEEEEeeH--H----HHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCHHHHH-HHHHHH-HHHhhhc--
Q psy11425 212 REIKSNVDILLEIDF--Q----GAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVIS-RRILSA-NKEISYA-- 281 (672)
Q Consensus 212 ~~l~~G~~vIldi~~--~----g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~~~e~i~-~rl~~~-~~e~~~~-- 281 (672)
..++.|..||++... + .++.+.......++||+++| .+++.+|.. ++ ...... ..+... .....|.
T Consensus 464 ~~~~~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~-~ev~~~R~~-r~--l~~~~~~~~i~~~~~~r~~~~~p 539 (573)
T 1m8p_A 464 ELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATP-LEHCEQSDK-RG--IYAAARRGEIKGFTGVDDPYETP 539 (573)
T ss_dssp HHHHTTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCC-HHHHHHHCS-SC--HHHHHHTTSSSSCBTTTBCCCCC
T ss_pred HHHhCCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCC-HHHHHHHhc-cc--chhhhhHHHHHHHHhcccccccc
Confidence 455678888877422 1 22222222123467888876 899988842 11 000000 000000 0001222
Q ss_pred CCCcEEEEcC--CHHHHHHHHHHHHHhc
Q psy11425 282 NKFDYIIINN--KFSKALLQLKAIINAN 307 (672)
Q Consensus 282 ~~~D~VI~Nd--dle~a~~qL~~iI~~~ 307 (672)
...|++|.++ +++++.++|...|...
T Consensus 540 ~~~dl~IDts~~s~eevv~~Il~~l~~~ 567 (573)
T 1m8p_A 540 EKADLVVDFSKQSVRSIVHEIILVLESQ 567 (573)
T ss_dssp SSCSEEECTTTSCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHhc
Confidence 3568888766 5999999999988753
No 131
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.14 E-value=1.2e-06 Score=84.27 Aligned_cols=162 Identities=16% Similarity=0.070 Sum_probs=79.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCce--eeccccc-ccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhcc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIK--LSISTTT-RPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGN 201 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~--~~v~~TT-R~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g~ 201 (672)
..+.+|+|+|||||||||+++.|... +..+ +...... .....+. ...|.+.... .. .....+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~-~~~g~i~i~~d~~~~~~~~~~--~~~~~~~~~~-~~-----------~~v~~~ 71 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL-PGVPKVHFHSDDLWGYIKHGR--IDPWLPQSHQ-QN-----------RMIMQI 71 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC-SSSCEEEECTTHHHHTCCSSC--CCTTSSSHHH-HH-----------HHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc-cCCCeEEEcccchhhhhhccc--ccCCccchhh-hh-----------HHHHHH
Confidence 45789999999999999999999887 3222 1111110 0001000 1122221111 00 000111
Q ss_pred ccCcchHHHHHHHhcCCeEEEEeeH--HHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCC---CHHHHHHHHHHHHH
Q psy11425 202 FYGTSFFPIVREIKSNVDILLEIDF--QGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQD---KYDVISRRILSANK 276 (672)
Q Consensus 202 ~YGt~~~~I~~~l~~G~~vIldi~~--~g~~~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~~---~~e~i~~rl~~~~~ 276 (672)
.+ .........|..++++... ..+..+......+..+++.+ +.+++..|+..|+.. +.+.+.. +.....
T Consensus 72 l~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~-~~~v~~~R~~~r~~~~lld~~~~~~-~~~~~~ 145 (191)
T 1zp6_A 72 AA----DVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRT-TAAEAIERCLDRGGDSLSDPLVVAD-LHSQFA 145 (191)
T ss_dssp HH----HHHHHHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEEC-CHHHHHHHHHTTCTTSCCCHHHHHH-HHHHTT
T ss_pred HH----HHHHHHhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecC-CHHHHHHHHHhcCCCccCCHHHHHH-HHHHHh
Confidence 11 0111123345566665321 12222322122344566665 599999999988643 2332221 111111
Q ss_pred HhhhcCCCcEEEEcC--CHHHHHHHHHHHHHhccc
Q psy11425 277 EISYANKFDYIIINN--KFSKALLQLKAIINANRC 309 (672)
Q Consensus 277 e~~~~~~~D~VI~Nd--dle~a~~qL~~iI~~~~~ 309 (672)
.+..+.+++|.++ ++++++++|.+++....+
T Consensus 146 --~l~~~~~~~i~t~~~~~~~~~~~i~~~l~~~~~ 178 (191)
T 1zp6_A 146 --DLGAFEHHVLPVSGKDTDQALQSAINALQSGRF 178 (191)
T ss_dssp --CCGGGGGGEEECTTCCTTTTTTTTHHHHHHTTS
T ss_pred --ccCcccccEEECCCCCHHHHHHHHHHHHHhhhh
Confidence 1122235566654 589999999998876544
No 132
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.10 E-value=2.8e-06 Score=86.71 Aligned_cols=43 Identities=21% Similarity=0.061 Sum_probs=24.9
Q ss_pred chhHHhhhhhhhhccccccceEEEEeCCCCCChHHHHHHHHhcCCC
Q psy11425 108 LSLEAQQRHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDHK 153 (672)
Q Consensus 108 ~C~~c~~~~E~~~r~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~ 153 (672)
.|..|-....... ...+++|+|.|++||||||+++.|.+....
T Consensus 8 ~~~~~~~~~~~~~---~~~~~~I~ieG~~GsGKST~~~~L~~~l~~ 50 (263)
T 1p5z_B 8 PKRSCPSFSASSE---GTRIKKISIEGNIAAGKSTFVNILKQLCED 50 (263)
T ss_dssp ------------------CCEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred hhccCCCCccccc---ccCceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3445544333332 234579999999999999999999988644
No 133
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.09 E-value=4.6e-07 Score=92.08 Aligned_cols=66 Identities=12% Similarity=-0.011 Sum_probs=45.2
Q ss_pred cEEEEEeCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHh-hhcCCCcEEEEcC-CHHHHHHHHHHHHHh
Q psy11425 239 AIGIFILPPSLDSLKERLYKRGQ----DKYDVISRRILSANKEI-SYANKFDYIIINN-KFSKALLQLKAIINA 306 (672)
Q Consensus 239 ~~vIfI~~ps~e~l~~RL~~Rg~----~~~e~i~~rl~~~~~e~-~~~~~~D~VI~Nd-dle~a~~qL~~iI~~ 306 (672)
..+|+++++ .+...+|+++|+. .+.+.. .++..+..+. .+...+|+||.|+ +++++..+|..+++.
T Consensus 169 d~VvVvdv~-~~~qieRl~~rg~~~v~i~~~~~-~~i~~Q~se~~~k~~~AD~VI~N~gsle~l~~qV~~ll~~ 240 (241)
T 1dek_A 169 DYYIVPDTR-QDHEMDAARAMGATVIHVVRPGQ-KSNDTHITEAGLPIRDGDLVITNDGSLEELFSKIKNTLKV 240 (241)
T ss_dssp SEEEECCCC-SHHHHHHHHHTTCEEEEEECTTC-CCSCCSGGGSCCCCCTTCEEEECCSCHHHHHHHHHHHHHT
T ss_pred CEEEEEcCC-cHHHHHHHHHCCCceEEEECccc-chhhcCCCcccccccCCCEEEECCCCHHHHHHHHHHHHhh
Confidence 455767776 7777889999863 111111 2344444444 3567899999999 599999999998853
No 134
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.00 E-value=1.8e-05 Score=90.61 Aligned_cols=156 Identities=13% Similarity=0.078 Sum_probs=82.8
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC----CCceeecccccccCCCCCCCCcccccCCHHHHHHHHHcCCchhHHhHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD----HKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHG 200 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~----~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~~i~~g~fle~~~~~g 200 (672)
+++.+|+|+|+|||||||+++.|.+.. ..+........|..-. .+. .|. ...-...
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~---~~~--~fs-~~dree~-------------- 109 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLN---KNL--GFS-PEDREEN-------------- 109 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTT---TTC--CSS-HHHHHHH--------------
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccC---ccc--cCC-hhhhHHH--------------
Confidence 467899999999999999999998863 2232222233332111 011 111 1000000
Q ss_pred cccCcchHHHHHHHhcCCeEEEEe-e-----HHHHHHHHHhCC-CcEEEEEeCCCHHHHHHHHHHcC----CCCHHHHHH
Q psy11425 201 NFYGTSFFPIVREIKSNVDILLEI-D-----FQGAKQIKKKFP-NAIGIFILPPSLDSLKERLYKRG----QDKYDVISR 269 (672)
Q Consensus 201 ~~YGt~~~~I~~~l~~G~~vIldi-~-----~~g~~~l~~~~~-~~~vIfI~~ps~e~l~~RL~~Rg----~~~~e~i~~ 269 (672)
+-...+.+...++.|.+|+.+. . .+.++.+..... ..++||+++| ++++.+|+.++. +... +..
T Consensus 110 --~r~i~eva~~~l~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap-~Evl~~Rl~r~ly~~aR~~~--~~~ 184 (630)
T 1x6v_B 110 --VRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAP-LHVCEQRDVKGLYKKARAGE--IKG 184 (630)
T ss_dssp --HHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECC-HHHHHHHCTTSHHHHHTTC------
T ss_pred --HHHHHHHHHHHHhCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECC-HHHHHHHhccccchhhhhhh--HHH
Confidence 0000112233456788777763 2 122233323222 3567889876 999999975210 1000 000
Q ss_pred HHHHHHHHhhhc--CCCcEEEEcC--CHHHHHHHHHHHHHhcc
Q psy11425 270 RILSANKEISYA--NKFDYIIINN--KFSKALLQLKAIINANR 308 (672)
Q Consensus 270 rl~~~~~e~~~~--~~~D~VI~Nd--dle~a~~qL~~iI~~~~ 308 (672)
.......|. ...|++|.++ +++++.++|.+.|....
T Consensus 185 ---~~~~~~~Ye~p~~~dlvIDts~~s~eevv~~Il~~L~~~~ 224 (630)
T 1x6v_B 185 ---FTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERD 224 (630)
T ss_dssp ---CBTTTBCCCCCSSCSEEEETTSSCHHHHHHHHHHHHHHTT
T ss_pred ---HHHhhhhhcccCCCcEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 001111232 4578999886 59999999999997643
No 135
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.90 E-value=6.5e-05 Score=75.64 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=23.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
++.+|+|+||+||||||+++.|.+.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998664
No 136
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.87 E-value=1.4e-05 Score=90.55 Aligned_cols=27 Identities=37% Similarity=0.410 Sum_probs=24.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+|+|+|+||||||||++.|....
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhh
Confidence 457899999999999999999998764
No 137
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.86 E-value=1.6e-06 Score=91.73 Aligned_cols=27 Identities=26% Similarity=0.117 Sum_probs=23.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+|+|+|||||||||+++.|....
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999999997653
No 138
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.81 E-value=3.6e-06 Score=88.70 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=24.2
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+|+|+||+|||||||++.|....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3567899999999999999999997753
No 139
>3h0g_F DNA-directed RNA polymerases I, II, and III subunit rpabc2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=97.75 E-value=1.5e-05 Score=72.23 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=46.7
Q ss_pred hhhhhhcchhHHHHHHHHhhhhhcCCCcccccccCCCcchhhhhhhcCcCcc
Q psy11425 319 GLKKINNRFKLTLCAVYRARQLLKGHTKKIIGCDNDKVTVIALREISHGKIG 370 (672)
Q Consensus 319 ~~~~~~~~y~l~~~~~~~a~~~~~~~~~~~~~~~~~k~~~~a~~~~~~~~v~ 370 (672)
.+...-+||.++.+..+||+||..|+++++..-.+.+|+.+|++||++|++.
T Consensus 70 ~T~pylTRYElARIiG~RAlQIsmGAp~LVd~~~~tdPl~IA~~EL~egkIP 121 (142)
T 3h0g_F 70 TTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAMKELAQKKIP 121 (142)
T ss_dssp CSCSSCCHHHHHHHHHHHHHHHHTCCCCCSCCCSCCCTTHHHHHHHHTTCCC
T ss_pred cCCCccCHHHHHHHHHHHHHHHHCCCCceEcCCCCCCHHHHHHHHHHcCCCc
Confidence 5566678999999999999999999999977555889999999999999987
No 140
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.75 E-value=2.8e-05 Score=78.08 Aligned_cols=28 Identities=29% Similarity=0.222 Sum_probs=24.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCCCc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDHKI 154 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~~~ 154 (672)
+++|+|.|++||||||+++.|.+....+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~~ 29 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEW 29 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 5789999999999999999999986443
No 141
>1qkl_A RPB6, DNA-directed RNA polymerase II 14.4 KD polypeptide; transcription; NMR {Homo sapiens} SCOP: a.143.1.2
Probab=97.73 E-value=9.8e-06 Score=72.45 Aligned_cols=53 Identities=15% Similarity=0.048 Sum_probs=46.3
Q ss_pred hhhhhhhcchhHHHHHHHHhhhhhcCCCcccccccCCCcchhhhhhhcCcCcc
Q psy11425 318 DGLKKINNRFKLTLCAVYRARQLLKGHTKKIIGCDNDKVTVIALREISHGKIG 370 (672)
Q Consensus 318 ~~~~~~~~~y~l~~~~~~~a~~~~~~~~~~~~~~~~~k~~~~a~~~~~~~~v~ 370 (672)
..+.+..+||.++.++.+||+||..||+|++.--+..||+.+|++||++|++.
T Consensus 51 r~t~p~lTRYElARIiG~RAlQLs~GAppLVd~e~~~dPl~IAl~ElaeGkIp 103 (127)
T 1qkl_A 51 RITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIP 103 (127)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHHHHHSCCSSSCSSSSCSSSHHHHHHHHHTCCC
T ss_pred cccCCCcCHHHHHHHHHHHHHHHhcCCcceEcCCCCCCHHHHHHHHHHcCCCC
Confidence 35667789999999999999999999999876545569999999999999975
No 142
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.60 E-value=0.00044 Score=77.72 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=24.0
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..++.+|+|+|+|||||||+++.|.+..
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3467799999999999999999998764
No 143
>1twf_F ABC23, DNA-directed RNA polymerases I, II, and III 23 KD polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.143.1.2 PDB: 1i3q_F 1i6h_F 1k83_F* 1nik_F 1nt9_F 1pqv_F 1r5u_F 1r9s_F* 1r9t_F* 1sfo_F* 1twa_F* 1twc_F* 1i50_F* 1twg_F* 1twh_F* 1wcm_F 1y1v_F 1y1w_F 1y1y_F 1y77_F* ...
Probab=97.59 E-value=3.2e-05 Score=71.33 Aligned_cols=52 Identities=15% Similarity=0.055 Sum_probs=45.1
Q ss_pred hhhhhhcchhHHHHHHHHhhhhhcCCCcccccccCCCcchhhhhhhcCcCcc
Q psy11425 319 GLKKINNRFKLTLCAVYRARQLLKGHTKKIIGCDNDKVTVIALREISHGKIG 370 (672)
Q Consensus 319 ~~~~~~~~y~l~~~~~~~a~~~~~~~~~~~~~~~~~k~~~~a~~~~~~~~v~ 370 (672)
.+....+||.++.++.+||+||..|+++++.--+..||+.+|++||++|+|.
T Consensus 80 ~t~p~lTRYElARIiG~RAlQLsmGAppLVd~e~~~dPl~IAl~ElaeGkIP 131 (155)
T 1twf_F 80 ATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIP 131 (155)
T ss_dssp CSCSBCCHHHHHHHHHHHHHHHHTTCCCSSCCSSCCSHHHHHHHHHHTTCCC
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcCCCcEEecCCCCCHHHHHHHHHHcCCCC
Confidence 4456678999999999999999999999876545569999999999999975
No 144
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.12 E-value=0.0049 Score=58.39 Aligned_cols=84 Identities=17% Similarity=0.136 Sum_probs=44.5
Q ss_pred HHhcCCeEEEEee---HHHHH----HHHHhCCCcEEEEEeCCCHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHhh--hc
Q psy11425 213 EIKSNVDILLEID---FQGAK----QIKKKFPNAIGIFILPPSLDSLKERLYKRGQ--DKYDVISRRILSANKEIS--YA 281 (672)
Q Consensus 213 ~l~~G~~vIldi~---~~g~~----~l~~~~~~~~vIfI~~ps~e~l~~RL~~Rg~--~~~e~i~~rl~~~~~e~~--~~ 281 (672)
.+..|...+++-. ..+-+ -.+....+|.+++++-| ...+-.+...|.. ..++.+......-...+. ..
T Consensus 69 ~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEP-t~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~ 147 (171)
T 4gp7_A 69 RLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLP-EKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQR 147 (171)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCC-HHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHH
T ss_pred HHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCC-HHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHh
Confidence 3445666666632 22211 22333457887888876 7788888777642 344444333322222211 11
Q ss_pred CCCcEEEEcCCHHHHH
Q psy11425 282 NKFDYIIINNKFSKAL 297 (672)
Q Consensus 282 ~~~D~VI~Nddle~a~ 297 (672)
+-+..+++-.|++++.
T Consensus 148 ~g~tvi~vtH~~~~~~ 163 (171)
T 4gp7_A 148 EGFRYVYILNSPEEVE 163 (171)
T ss_dssp HTCSEEEEECSHHHHH
T ss_pred cCCcEEEEeCCHHHhh
Confidence 2467777777877653
No 145
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.07 E-value=0.00014 Score=70.10 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=29.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEK 170 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~ 170 (672)
|.++++|+|+|||||||+++.|.......++.+..++..++..+.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~~i 49 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDV 49 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCcccc
Confidence 457899999999999999999987643222334455555554443
No 146
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.61 E-value=0.0079 Score=66.52 Aligned_cols=28 Identities=11% Similarity=0.288 Sum_probs=23.0
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
...++.+|+|+|.|||||||+++.|.+.
T Consensus 35 ~~~~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 35 MTNCPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3456679999999999999999999876
No 147
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.56 E-value=0.00063 Score=65.18 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.2
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++|+|+|++||||||++..|....
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 148
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.37 E-value=0.0015 Score=73.00 Aligned_cols=72 Identities=11% Similarity=-0.015 Sum_probs=44.2
Q ss_pred cccCCCCCcCccCCcchhhhhhh----------------------CCCccchhHHhhhhhhhhccccccceEEEEeCCCC
Q psy11425 80 IDKKEYGWCKDTGEPIGILRLLA----------------------KPMATLSLEAQQRHELKKKSFKSFGNIFIISAPSG 137 (672)
Q Consensus 80 i~~gtyG~C~~Cge~Ip~~RL~a----------------------~P~a~~C~~c~~~~E~~~r~~~~~~kiIvLtGpsG 137 (672)
+.-..|-+|..||.-|+..+.-. .|.--.+.+-..............+.+|+|+|.||
T Consensus 326 v~fd~~~y~~~~g~~i~~d~~p~~~~~~~~iSgt~IR~~Lr~G~~~P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsG 405 (511)
T 1g8f_A 326 VPFRMVTYLPDEDRYAPIDQIDTTKTRTLNISGTELRRRLRVGGEIPEWFSYPEVVKILRESNPPRPKQGFSIVLGNSLT 405 (511)
T ss_dssp ECCCCEEEEGGGTEEEEGGGCSSSCCCCBCCCHHHHHHHHHHTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCC
T ss_pred EeecceeEecccCeEEEcccCCCCcccccccCHHHHHHHHhCCCCCCccccChhhHHHHHHhcccccccceEEEecccCC
Confidence 33567899999998776654332 22222222222111111111123457899999999
Q ss_pred CChHHHHHHHHhcC
Q psy11425 138 AGKSTLVNELLKKD 151 (672)
Q Consensus 138 SGKSTLa~~L~e~~ 151 (672)
||||||++.|.+..
T Consensus 406 sGKSTIa~~La~~L 419 (511)
T 1g8f_A 406 VSREQLSIALLSTF 419 (511)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998885
No 149
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.89 E-value=0.0042 Score=64.46 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=24.3
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+|+|+|+|||||||+++.|...+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999998765
No 150
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.80 E-value=0.0056 Score=58.03 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=23.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+..++|+||+|+||||+++.+...
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998765
No 151
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.65 E-value=0.045 Score=58.36 Aligned_cols=28 Identities=21% Similarity=0.561 Sum_probs=25.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+.+++|+||+||||||+.+.|....+
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4577999999999999999999998865
No 152
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.61 E-value=0.0059 Score=58.59 Aligned_cols=23 Identities=35% Similarity=0.626 Sum_probs=20.8
Q ss_pred EEEEeCCCCCChHHHHHHHHhcC
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++|+||+||||||+++.|....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 153
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.60 E-value=0.0063 Score=61.06 Aligned_cols=29 Identities=38% Similarity=0.467 Sum_probs=25.0
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
...+.+++|+||+|||||||.+.|....+
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34678999999999999999999977653
No 154
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.46 E-value=0.009 Score=58.67 Aligned_cols=27 Identities=37% Similarity=0.602 Sum_probs=24.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
.++.|+|+|||||||||++..|.+.+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 467899999999999999999999874
No 155
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.42 E-value=0.0086 Score=56.40 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.7
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+.+++|.||+||||||+.+.|....|
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5678999999999999999999987653
No 156
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.36 E-value=0.0078 Score=59.60 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=22.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHH
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELL 148 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~ 148 (672)
..+.+++|+||+||||||+++.|.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 467899999999999999999887
No 157
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.33 E-value=0.0036 Score=59.86 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++++|+|+||||||||++.|...+
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998775
No 158
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.32 E-value=0.0091 Score=60.92 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=24.4
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+||||||+.+.|....
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 3567899999999999999999997764
No 159
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.29 E-value=0.007 Score=60.26 Aligned_cols=27 Identities=41% Similarity=0.406 Sum_probs=24.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999997765
No 160
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.25 E-value=0.0087 Score=60.11 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=24.6
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.|....
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999999997765
No 161
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.19 E-value=0.011 Score=59.54 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=24.8
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.|....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3567899999999999999999998765
No 162
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.18 E-value=0.009 Score=60.97 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=25.0
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
...+.+++|+||+|||||||.+.|....+
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34678999999999999999999987653
No 163
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.16 E-value=0.0088 Score=61.23 Aligned_cols=27 Identities=41% Similarity=0.508 Sum_probs=24.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 467899999999999999999997664
No 164
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.16 E-value=0.0087 Score=58.43 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.+++|+||+||||||+++.|...
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999764
No 165
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.16 E-value=0.009 Score=61.51 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=24.6
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+.+++|+||+|||||||.+.|....+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4678999999999999999999977653
No 166
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.15 E-value=0.01 Score=60.00 Aligned_cols=28 Identities=32% Similarity=0.349 Sum_probs=24.6
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+.+++|+||+|||||||.+.|....+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999999977653
No 167
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.10 E-value=0.011 Score=58.98 Aligned_cols=28 Identities=21% Similarity=0.482 Sum_probs=24.7
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+.+++|+||+|||||||.+.|....+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4678999999999999999999987653
No 168
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.08 E-value=0.011 Score=61.94 Aligned_cols=30 Identities=27% Similarity=0.234 Sum_probs=25.6
Q ss_pred cccccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 122 SFKSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 122 ~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+++.+++|+||||||||||++.|....
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344578899999999999999999998764
No 169
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.08 E-value=0.012 Score=61.60 Aligned_cols=29 Identities=34% Similarity=0.480 Sum_probs=25.3
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
...+.+++|+||+|||||||++.|...++
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 35688999999999999999999987763
No 170
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.04 E-value=0.011 Score=59.87 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=23.7
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.+++|+||+|||||||.+.|...
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999875
No 171
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.02 E-value=0.012 Score=60.31 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=25.1
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
...+.+++|+||+|||||||.+.|....+
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34678999999999999999999987653
No 172
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.02 E-value=0.01 Score=60.22 Aligned_cols=27 Identities=37% Similarity=0.564 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999997765
No 173
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.01 E-value=0.011 Score=60.52 Aligned_cols=28 Identities=32% Similarity=0.530 Sum_probs=24.7
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+.+++|+||+|||||||.+.|....+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 4678999999999999999999987653
No 174
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.99 E-value=0.012 Score=59.90 Aligned_cols=28 Identities=25% Similarity=0.320 Sum_probs=24.6
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.|....
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3467899999999999999999997764
No 175
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.99 E-value=0.012 Score=59.12 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 176
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.97 E-value=0.022 Score=53.12 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.3
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+..++|+||+|+||||+++.+.+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999997763
No 177
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.97 E-value=0.011 Score=58.17 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.9
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.+++|+||+|||||||.+.|...
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35679999999999999999999765
No 178
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.96 E-value=0.011 Score=60.06 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=24.7
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.|....
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999999998765
No 179
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=94.95 E-value=0.13 Score=49.69 Aligned_cols=120 Identities=13% Similarity=0.065 Sum_probs=77.9
Q ss_pred CceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEEeeCCCCCCCCCCCeEEEEecCCCCCCceEEecC
Q psy11425 393 WCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISND 472 (672)
Q Consensus 393 ~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aVHSlKD~p~~~~~gl~i~a~~~R~d~~D~lv~~~ 472 (672)
|++++++.+. - .++..+|.+|++|+++-++-.-|. ....+.+.. +=-...-++++++
T Consensus 42 g~~~~~~~~~-~-------------------~~~~~~l~~g~~D~~~~~~~~~~~-r~~~~~fs~--p~~~~~~~~~~~~ 98 (237)
T 3kzg_A 42 HATCTFEAYI-F-------------------DDLFPALKNREVDLVIASMIITDE-RKKHFIFSL--PYMESNSQYITTV 98 (237)
T ss_dssp TCEEEEEEEC-G-------------------GGHHHHHHTTSSSEECSSCBCCTT-GGGTCEECC--CSBCCEEEEEEET
T ss_pred CCceEEEEcC-H-------------------HHHHHHHhCCCCCEEEEccccChh-Hhccceeee--eeeecceEEEEEC
Confidence 7888888762 1 235678999999998875543332 122222211 1112233455544
Q ss_pred C---CCCcCCCCCCeeecCcHHH-HHHHHHhCCCCeEEcccCCHHHHHhhhcCCCCCEeehhHhhHhhc
Q psy11425 473 Y---ISLSTLPKNAVVGTNSLRR-KVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRL 537 (672)
Q Consensus 473 ~---~~~~~lp~~~~iGTsS~RR-~~ql~~~~p~~~~~~iRGNv~tRl~kl~~g~~daiilA~Agl~Rl 537 (672)
+ .++++| .|.+||+..--- ...+...+|+.+++.. .+.+.-++.|.+|++||++.....+..+
T Consensus 99 ~~~~~~~~dL-~g~~i~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~G~vDa~~~~~~~~~~~ 165 (237)
T 3kzg_A 99 DSKISTFDDL-HGKKIGVRKGTPYARQVLSENRNNQVIFY-ELIQDMLLGLSNNQVDASLMDYEAAKYW 165 (237)
T ss_dssp TCSCCSGGGG-TTCEEEEETTSTHHHHHHHTCSSCEEEEE-SSHHHHHHHHHTTSSSEEEEEHHHHHHH
T ss_pred CCCCCCHHHh-CCCEEEEecCCHHHHHHHHhCCCCcEEEe-CCHHHHHHHHHcCCCCEEEeCcHHHHHH
Confidence 3 456777 477887754433 5677788999888866 4788999999999999999876655443
No 180
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.95 E-value=0.0098 Score=58.92 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=24.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999997765
No 181
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.90 E-value=0.013 Score=59.88 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=24.0
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
...+.+++|+||+|||||||.+.|...
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 346789999999999999999999875
No 182
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.88 E-value=0.013 Score=54.55 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=22.8
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+..++|+||+|+||||+++.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999997753
No 183
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.81 E-value=0.015 Score=59.01 Aligned_cols=28 Identities=36% Similarity=0.553 Sum_probs=24.6
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||.+.|....
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3467899999999999999999997765
No 184
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=94.81 E-value=0.53 Score=48.94 Aligned_cols=40 Identities=8% Similarity=0.035 Sum_probs=29.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMR 166 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r 166 (672)
.+.+|++-|.-||||+|.++.|.+....-++-+ +.++.|.
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V-~~~~~Pt 124 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARV-VALTKPT 124 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEE-EECCSCC
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeE-EEeCCcC
Confidence 468999999999999999999999874322222 3444553
No 185
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.80 E-value=0.015 Score=60.82 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=22.5
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
-++++|+|++||||||+.+.|....
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4689999999999999999998764
No 186
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.77 E-value=0.016 Score=59.28 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=25.0
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
...+.+++|+||+|||||||.+.|....+
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34678999999999999999999987653
No 187
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.76 E-value=0.015 Score=58.59 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.7
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
.. .+++|+||+|||||||.+.|....+
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45 7999999999999999999987753
No 188
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.74 E-value=0.015 Score=58.94 Aligned_cols=28 Identities=36% Similarity=0.553 Sum_probs=24.7
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+.+++|+||+|||||||.+.|....+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999999987653
No 189
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.71 E-value=0.016 Score=59.76 Aligned_cols=28 Identities=36% Similarity=0.500 Sum_probs=24.5
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+.+++|+||+|||||||.+.|....+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4678999999999999999999977653
No 190
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=94.56 E-value=0.21 Score=48.25 Aligned_cols=146 Identities=10% Similarity=0.037 Sum_probs=81.6
Q ss_pred HHHHHHcCCccEEEeeCCCCCCCCCCCeEEEEecCCCCCCceEEecCC---CCCcCCCCCCeeecCcHHHHHHHHHhCCC
Q psy11425 426 LEMAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY---ISLSTLPKNAVVGTNSLRRKVLIKSFFPS 502 (672)
Q Consensus 426 le~aLl~~~~D~aVHSlKD~p~~~~~gl~i~a~~~R~d~~D~lv~~~~---~~~~~lp~~~~iGTsS~RR~~ql~~~~p~ 502 (672)
+-.+|.+|++|+++.++-.-|. ....+.+..+. ......+++.+++ .++++| .|-+||+.+---........|+
T Consensus 62 ~~~~l~~g~~D~~~~~~~~~~~-r~~~~~~~p~~-~~~~~~~~~~~~~~~i~~~~dL-~g~~i~v~~g~~~~~~l~~~~~ 138 (242)
T 3del_B 62 LILNLKQHRIDAVITGMSITPS-RLKEILMIPYY-GEEIKHLVLVFKGENKHPLPLT-QYRSVAVQTGTYQEAYLQSLSE 138 (242)
T ss_dssp HHHHHHTTSSSEECSSBBCCHH-HHTTEEEEEEE-EEEESEEEEEEESCCSCCCCGG-GSSCEEEETTSHHHHHHHHSTT
T ss_pred HHHHHhCCCcCEEEecCcCCHH-HHhcccceeee-ecCCceEEEEeCCCCCCCHHHh-CCCEEEEEcCcHHHHHHHhCCC
Confidence 4678999999999865433332 11222221111 0022345555432 456777 4667776433333333344899
Q ss_pred CeEEcccCCHHHHHhhhcCCCCCEeehhHhhHhhcCCCCceeeecCCCCCCCCCCCceEEEEEecCcHHHHHHh
Q psy11425 503 LIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 576 (672)
Q Consensus 503 ~~~~~iRGNv~tRl~kl~~g~~daiilA~Agl~Rl~~~~~~~~~l~~~~~~pa~gQGalave~r~~d~~~~~~l 576 (672)
.+++... |.+.-++.|..|++||++....-+..+--.......+.. .+.+.+-.--+++-++++++++.+.+
T Consensus 139 ~~~~~~~-~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~~l~~~l 210 (242)
T 3del_B 139 VHIRSFD-STLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATI-DLPEDQWVLGYGIGVASDRPALALKI 210 (242)
T ss_dssp CCEEEES-SHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEE-ECCGGGCEEEEEEEEETTCHHHHHHH
T ss_pred ceEEEEC-CHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCeEEecC-ccCcccccceEEEEEeCCCHHHHHHH
Confidence 9998765 889999999999999999976655544221111112211 11111100117888898887655544
No 191
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.56 E-value=0.023 Score=53.26 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.0
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+..|+|+|++|||||||.+.|....
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998754
No 192
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.55 E-value=0.024 Score=52.79 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=22.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+..++|+||+|+||||+++.+.+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35578999999999999999997763
No 193
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.55 E-value=0.018 Score=60.09 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=23.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+.+|+|+||+||||||+++.|....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999997654
No 194
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.53 E-value=0.015 Score=56.31 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.6
Q ss_pred eEEEEeCCCCCChHHHHHHHHhc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.+++|+||+||||||+.+.|...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhh
Confidence 46899999999999999998765
No 195
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.45 E-value=0.021 Score=60.28 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=23.8
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+|+|+||+||||||+++.|....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999997654
No 196
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.45 E-value=0.016 Score=63.35 Aligned_cols=52 Identities=35% Similarity=0.457 Sum_probs=32.0
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCC--CCCcccccC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGE--KNGREYYFT 178 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E--~~G~dY~fv 178 (672)
...|+|+|+||||||||.+.|...........+.|||.+..+. .+|..+.++
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~ 233 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFV 233 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEES
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEE
Confidence 4679999999999999999998764333444566777665442 345555544
No 197
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.44 E-value=0.027 Score=51.20 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=21.3
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+-|+|+|++|||||||.+.|....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999998764
No 198
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.44 E-value=0.019 Score=61.44 Aligned_cols=27 Identities=37% Similarity=0.489 Sum_probs=24.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||||||||||.+.|....
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 467899999999999999999998765
No 199
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.40 E-value=0.02 Score=55.71 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=22.7
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.+++|+||+||||||+++.|...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 35679999999999999999998754
No 200
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.37 E-value=0.022 Score=59.32 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.8
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+||||||+++.|....
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999997654
No 201
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=94.33 E-value=0.02 Score=61.47 Aligned_cols=30 Identities=23% Similarity=0.169 Sum_probs=23.6
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
.+..+++|+|-|+.||||||+++.|.+.+.
T Consensus 45 ~~~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 45 KMPTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp -CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 334577999999999999999999998753
No 202
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.32 E-value=0.018 Score=61.53 Aligned_cols=27 Identities=37% Similarity=0.513 Sum_probs=24.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||||||||||.+.|.-..
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 467899999999999999999998765
No 203
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.31 E-value=0.021 Score=61.46 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=24.8
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+.+++|+||||||||||.+.|.-..+
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 4678999999999999999999987753
No 204
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.28 E-value=0.023 Score=55.01 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=22.5
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHh
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLK 149 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e 149 (672)
..+.+++|+|+|||||||++..|..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999999975
No 205
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.27 E-value=0.03 Score=58.30 Aligned_cols=40 Identities=33% Similarity=0.258 Sum_probs=28.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceeeccccccc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRP 164 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~ 164 (672)
+++-+|+|+|.+|||||||.+.|...........+.|||.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~ 47 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRM 47 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceee
Confidence 3456999999999999999999987643222233445543
No 206
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.26 E-value=0.022 Score=60.90 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=24.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|.||||||||||.+.|.-..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 467899999999999999999998765
No 207
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.21 E-value=0.021 Score=58.32 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=24.1
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
.. +.+++|+||+|||||||.+.|....|
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p 55 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLLP 55 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35 78999999999999999999976543
No 208
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.20 E-value=0.023 Score=60.76 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=24.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||||||||||.+.|....
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 467899999999999999999998765
No 209
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.19 E-value=0.022 Score=60.80 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||||||||||.+.|.-..
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 210
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.17 E-value=0.021 Score=59.19 Aligned_cols=29 Identities=21% Similarity=0.441 Sum_probs=25.2
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
...+.+++|+||+|||||||.+.|....+
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 35688999999999999999999987653
No 211
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.16 E-value=0.024 Score=60.89 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=24.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|.||||||||||.+.|.-..
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 467899999999999999999998765
No 212
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.11 E-value=0.028 Score=58.43 Aligned_cols=24 Identities=42% Similarity=0.768 Sum_probs=22.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+.+++|+||||||||||.+.|. ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 5799999999999999999999 64
No 213
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.10 E-value=0.026 Score=55.03 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=22.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+..++|+||+|+||||+++.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999987653
No 214
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.04 E-value=0.029 Score=51.96 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
...|+|+|++|+|||||.+.|...
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999865
No 215
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.02 E-value=0.025 Score=60.78 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|.||||||||||.+.|.-..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 467899999999999999999998765
No 216
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.98 E-value=0.027 Score=60.55 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=24.4
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+|+|+|||||||||+++.|....
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3567799999999999999999998754
No 217
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.92 E-value=0.028 Score=55.25 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=23.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
+.+.+++|+|||||||||++..|...
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45789999999999999999999774
No 218
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.90 E-value=0.03 Score=60.06 Aligned_cols=28 Identities=21% Similarity=0.464 Sum_probs=24.3
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+|+|+||+||||||+.+.|....
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3457799999999999999999998764
No 219
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.89 E-value=0.034 Score=52.19 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
+...|+|+|++|||||||.+.|...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999865
No 220
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.87 E-value=0.034 Score=58.76 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=23.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.+++|+|+|||||||+.+.|...
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999999999999754
No 221
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.86 E-value=0.035 Score=58.94 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.9
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
....+|+|+|+||||||||.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999864
No 222
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.86 E-value=0.038 Score=51.88 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
....|+|+|++|||||||.+.|....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34579999999999999999998764
No 223
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=93.85 E-value=0.1 Score=52.56 Aligned_cols=169 Identities=14% Similarity=0.170 Sum_probs=96.3
Q ss_pred HHHHHHHhhCCCceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEE--eeCCCCCCC--C--CCCe--
Q psy11425 382 YVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAV--HSLKDIPMN--L--PSGF-- 453 (672)
Q Consensus 382 ~v~~~l~~~~p~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aV--HSlKD~p~~--~--~~gl-- 453 (672)
.+...+++. |+++|++.+..- -...+||.+|++|+.. |. |.- . ..|.
T Consensus 20 ~~~~~~~~~--Gl~ve~~~f~d~-------------------~~~n~AL~~G~iD~n~fq~~----~~l~~~~~~~g~~l 74 (241)
T 1xs5_A 20 IAKEEVKKQ--HIELRIVEFTNY-------------------VALNEAVMRGDILMNFFQHV----PHMQQFNQEHNGDL 74 (241)
T ss_dssp HHHHHHHTT--TEEEEEEECSCH-------------------HHHHHHHHHTSSSEEEEEEH----HHHHHHHHHHTCCE
T ss_pred HHHHHHHHc--CCeEEEEEcCCh-------------------HHHHHHHHcCCCCEeccCCH----HHHHHHHHHCCCCE
Confidence 355667664 899998876531 1247899999999986 42 210 0 1233
Q ss_pred EEEEecCCCCCCceEEecCCCCCcCCCCCCeeecCc----HHHHHHHHHhC----------------------CCCeEEc
Q psy11425 454 ILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNS----LRRKVLIKSFF----------------------PSLIIKS 507 (672)
Q Consensus 454 ~i~a~~~R~d~~D~lv~~~~~~~~~lp~~~~iGTsS----~RR~~ql~~~~----------------------p~~~~~~ 507 (672)
+.++-...+ | ..+.+++.+++++||.|++||... .=|...++... .+++|++
T Consensus 75 ~~v~~~~~~-p-~g~ys~kiksl~dL~~G~~Iaip~d~sn~~ral~lL~~aGli~l~~~~~~~~t~~dI~~np~~v~~~~ 152 (241)
T 1xs5_A 75 VSVGNVHVE-P-LALYSRTYRHVSDFPAGAVIAIPNDSSNEARALRLLEAAGFIRMRAGSGLFATVEDVQQNVRNVVLQE 152 (241)
T ss_dssp EEEEEEEEC-C-CEEECSSCCSGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTTCCGGGEEECTTCCEEEE
T ss_pred EEEEeeccc-c-ceeecCCCCChHHcCCCCEEEEeCCCchHHHHHHHHHHCCCEEecCCCCCccChhhhhcCCCceEEEE
Confidence 333323233 2 356677889999999999998633 34454455421 2577877
Q ss_pred ccCCHHHHHhhhcCCCCCEeehhHhhHhhcCCCCc-eeeecCCCCCCCCCCCceEEEEEec---CcHHHHHHhhccCChh
Q psy11425 508 LRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKR-IRMLFSPNQILPAPGQGAIAIEILD---NRKELMEMLIPLNHYF 583 (672)
Q Consensus 508 iRGNv~tRl~kl~~g~~daiilA~Agl~Rl~~~~~-~~~~l~~~~~~pa~gQGalave~r~---~d~~~~~~l~~i~~~~ 583 (672)
+-..-- .+-| ++.||.++..-=....|+... -.-+++... .| -+..+.+|+ +++.+..+++.+++++
T Consensus 153 l~~~~~--~~al--~~VDaa~i~~~~a~~agl~~~~~~l~~e~~~-~~----~~nviv~r~~~~~~~~vk~l~~a~~s~~ 223 (241)
T 1xs5_A 153 VESALL--PRVF--DQVDGAVINGNYAIMAGLSARRDGLAVEPDA-SA----YANVLVVKRGNEADARVQAVLRALCGGR 223 (241)
T ss_dssp ECGGGH--HHHG--GGSSEEEECHHHHHHTTCCTTTTCSEECSCG-GG----GCEEEEEETTCTTCHHHHHHHHHHTSHH
T ss_pred eCHHHH--HHhh--hccCEEEECcHHHHHcCCCcccceEEEcCCC-Cc----eEEEEEEECCccChHHHHHHHHHHCCHH
Confidence 643111 2333 589999875432333444321 001222211 12 233455664 4578888999998877
Q ss_pred hHH
Q psy11425 584 SEQ 586 (672)
Q Consensus 584 t~~ 586 (672)
+..
T Consensus 224 v~~ 226 (241)
T 1xs5_A 224 VRT 226 (241)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 224
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=93.85 E-value=0.19 Score=50.24 Aligned_cols=175 Identities=11% Similarity=0.126 Sum_probs=104.2
Q ss_pred HHHHHhhCCCceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEEeeCCCCCCCC---CCCeEE-EEec
Q psy11425 384 RKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLKDIPMNL---PSGFIL-CAIL 459 (672)
Q Consensus 384 ~~~l~~~~p~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aVHSlKD~p~~~---~~gl~i-~a~~ 459 (672)
+.-|.+.|-|+++++..+.+.+-++ .+|.+|++|+||-|+ .+++. ..++.+ .-+.
T Consensus 34 atgl~~~f~gi~~~i~~mrg~~~RI-------------------~aL~~gk~D~aI~S~--~aa~e~~~~~~r~~~vdFg 92 (231)
T 2ozz_A 34 ASGLKAQFDGIPFYYAHMRGADIRV-------------------ECLLNGVYDMAVVSR--LAAESYLSQNNLCIALELG 92 (231)
T ss_dssp HHHHHHTTTTSCEEEEECSCHHHHH-------------------HHHHTTSCSEEEEEH--HHHHHHHHHSCEEEEEECC
T ss_pred HHHHHHHhcCCcEEEEEccChHHHH-------------------HHHHcCCCCEEEEec--ccchhhhcccCeEEEEEcC
Confidence 4456666668999999998776654 689999999999986 11100 012332 2344
Q ss_pred CCCC-CCceEEecCCCCCcCCCCCCeeec--CcHHHHHHHHHhCCCCeEEcccCCHHHHHhhhcCCCCCEeeh----hHh
Q psy11425 460 KRED-PRDAFISNDYISLSTLPKNAVVGT--NSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIIL----AAA 532 (672)
Q Consensus 460 ~R~d-~~D~lv~~~~~~~~~lp~~~~iGT--sS~RR~~ql~~~~p~~~~~~iRGNv~tRl~kl~~g~~daiil----A~A 532 (672)
+--- ...++|.+++. -... .+||- +|.--..--...+++.+++-+--+...=+..|.+|+.||+|. ..|
T Consensus 93 ~~yYv~~h~li~~~~~-~~~i---krVGvd~gS~dq~~lt~~~~~g~~Ve~ve~~y~~~i~~L~~G~IDA~Iwn~d~~~a 168 (231)
T 2ozz_A 93 PHTYVGEHQLICRKGE-SGNV---KRVGLDSRSADQKIMTDVFFGDSDVERVDLSYHESLQRIVKGDVDAVIWNVVAENE 168 (231)
T ss_dssp TTSSSCCEEEEEETTC-GGGC---CEEEECTTCHHHHHHHHHHHTTSCCEEEECCHHHHHHHHHHTSCCEEEEEC-CHHH
T ss_pred CCccccCeEEEEeCCC-cccc---EEEEecCCChhHHHHHhhhcCCCeEEEEECCHHHHHHHHHcCCccEEEEcCcchhh
Confidence 4333 45566665432 1112 68885 343333322334478776656567889999999999999999 444
Q ss_pred hHhhcCCCCceeeecCCCCCCCCCCCceEEEEEecCcHHHHHHhhccCChhhHHhHH
Q psy11425 533 GLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVK 589 (672)
Q Consensus 533 gl~Rl~~~~~~~~~l~~~~~~pa~gQGalave~r~~d~~~~~~l~~i~~~~t~~~~~ 589 (672)
. ...++. ...+.........+..+ |.+|++|..+.++|.++=+.+.-..+.
T Consensus 169 ~-~~~~l~---~~~l~~~~~~~~~~eav--I~v~k~n~~L~~~ln~~I~~~~v~~~Q 219 (231)
T 2ozz_A 169 L-TMLGLE---ATPLTDDPRFLQATEAV--VLTRVDDYPMQQLLRAVVDKHALLAHQ 219 (231)
T ss_dssp H-HHTTEE---EEECCSCHHHHHTTCEE--EEEETTCHHHHHHHHHHCCHHHHHHHH
T ss_pred h-cCCCcc---eeccccccccccCCceE--EEEECCCHHHHHHHHHHhHHHHHHHHH
Confidence 4 222221 11222211123344444 667999999999998655555544443
No 225
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.80 E-value=0.021 Score=60.80 Aligned_cols=27 Identities=30% Similarity=0.548 Sum_probs=24.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||||||||||.+.|.-..
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 467899999999999999999998765
No 226
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.80 E-value=0.032 Score=53.58 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=21.0
Q ss_pred eEEEEeCCCCCChHHHHHHHHhc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
+.++|+||+|+||||+++.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998765
No 227
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.77 E-value=0.034 Score=53.68 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=21.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+..++|+||+|+||||+++.+.+..
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999997753
No 228
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.74 E-value=0.034 Score=59.29 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=22.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+.+|+|+||+||||||+.+.|....
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 44599999999999999999987654
No 229
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.72 E-value=0.026 Score=57.84 Aligned_cols=24 Identities=46% Similarity=0.603 Sum_probs=21.2
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..++|+||+|||||||.+.|....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998654
No 230
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.72 E-value=0.044 Score=62.48 Aligned_cols=29 Identities=31% Similarity=0.491 Sum_probs=25.3
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
...+.+++|+||+||||||+.+.|....+
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 34688999999999999999999987763
No 231
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.70 E-value=0.035 Score=59.29 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.8
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+|+|+||+||||||+++.|....
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 467899999999999999999997654
No 232
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.68 E-value=0.039 Score=55.21 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
++-++|+||||+||||+++.+....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4458999999999999999998764
No 233
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.65 E-value=0.029 Score=60.68 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=24.4
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+|||||||||+.+.|....
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3467899999999999999999997654
No 234
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.61 E-value=0.029 Score=59.73 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=23.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
+..++|+||+|||||||++.|....+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999999988763
No 235
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=93.57 E-value=0.97 Score=46.36 Aligned_cols=124 Identities=13% Similarity=0.132 Sum_probs=78.4
Q ss_pred HHHHhhCCCceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEEeeCCCCCC----CCCCCeEEEEecC
Q psy11425 385 KKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLKDIPM----NLPSGFILCAILK 460 (672)
Q Consensus 385 ~~l~~~~p~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aVHSlKD~p~----~~~~gl~i~a~~~ 460 (672)
..+++..++++++++...+ |. ++-++|.+|++|+++-+. .|. .-...+.+.+...
T Consensus 49 g~~~~~~~g~~v~~~~~~~-~~------------------~~~~al~~G~~D~~~~~~--~~~~~~~~~g~~~~~v~~~~ 107 (324)
T 3ksx_A 49 RLLEQRFPRTKITWVEFPA-GP------------------QLLEALNVGSIDLGGAGD--IPPLFAQAAGADLLYVGWVP 107 (324)
T ss_dssp THHHHHCTTSEEEEEEESS-HH------------------HHHHHHHTTSCSEEEEES--HHHHHHHHTTCCEEEEEEEC
T ss_pred CHHHHhcCCCceEEEECCC-HH------------------HHHHHHHCCCCCEEeecC--HHHHHHHhcCCCEEEEEEec
Confidence 4566666789998876542 21 456899999999997653 111 1123466666665
Q ss_pred CCCCCceEEecCC---CCCcCCCCCCeeecC--cHHH--H-HHHHHhC---CCCeEEcccCCHHHHHhhhcCCCCCEeeh
Q psy11425 461 REDPRDAFISNDY---ISLSTLPKNAVVGTN--SLRR--K-VLIKSFF---PSLIIKSLRGNIDTRLNKLDKGEYAAIIL 529 (672)
Q Consensus 461 R~d~~D~lv~~~~---~~~~~lp~~~~iGTs--S~RR--~-~ql~~~~---p~~~~~~iRGNv~tRl~kl~~g~~daiil 529 (672)
......++|+++. .++++| .|.+||++ |.-. . ..|+..- .+++++++ +....+.-|.+|+.||+++
T Consensus 108 ~~~~~~~lvv~~~s~I~s~~DL-kGk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~--~~~~~~~al~~G~vDa~~~ 184 (324)
T 3ksx_A 108 PTPKAETILVPSKSALRTVADL-KGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL--SPANARAAFAAGQVDAWAI 184 (324)
T ss_dssp CCGGGEEEEEETTCSCCSGGGG-TTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC--CHHHHHHHHHTTCCSEEEE
T ss_pred CCCCceEEEEeCCCCCCCHHHh-CCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeC--CHHHHHHHHHcCCCCEEEE
Confidence 4444567776653 567888 58888875 2111 1 1222221 25677776 5788899999999999887
Q ss_pred hHh
Q psy11425 530 AAA 532 (672)
Q Consensus 530 A~A 532 (672)
...
T Consensus 185 ~~p 187 (324)
T 3ksx_A 185 WDP 187 (324)
T ss_dssp ETT
T ss_pred ccH
Confidence 543
No 236
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.56 E-value=0.031 Score=57.66 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=23.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..++.+.|.||||+|||++++.+....
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345788999999999999999998764
No 237
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.54 E-value=0.025 Score=59.63 Aligned_cols=28 Identities=21% Similarity=0.461 Sum_probs=24.5
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+.+++|+||+||||||+.+.|....+
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3567999999999999999999988764
No 238
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.54 E-value=0.05 Score=55.01 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=23.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+..+.|+||||+|||++++.+....
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 455789999999999999999998763
No 239
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.53 E-value=0.035 Score=59.25 Aligned_cols=26 Identities=46% Similarity=0.641 Sum_probs=22.8
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+.+++|+||||||||||++.|....
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 35689999999999999999998654
No 240
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.48 E-value=0.042 Score=57.39 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=23.5
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++.+|+|+|++||||||++..|....
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 457899999999999999999987653
No 241
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.48 E-value=0.02 Score=60.98 Aligned_cols=28 Identities=39% Similarity=0.500 Sum_probs=24.7
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||||||||||.+.|.-..
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3467899999999999999999998765
No 242
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.47 E-value=0.04 Score=54.86 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=22.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++.|+|+||||+|||++++.+....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998764
No 243
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.43 E-value=0.02 Score=60.98 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
+.+.++.|.|++|||||||+..+...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999888644
No 244
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.41 E-value=0.036 Score=57.53 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=22.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
...+|+|+|++|+|||||.+.|...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3458999999999999999999865
No 245
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.40 E-value=0.036 Score=55.37 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=20.4
Q ss_pred EEEeCCCCCChHHHHHHHHhcC
Q psy11425 130 FIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 130 IvLtGpsGSGKSTLa~~L~e~~ 151 (672)
++|+||||+||||+++.+....
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998764
No 246
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.36 E-value=0.033 Score=58.49 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=21.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+..++|+||+|+||||+++.+....
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3568999999999999999998763
No 247
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.35 E-value=0.025 Score=54.36 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=23.1
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
...+..|+|+|++|||||||.+.|...
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 355678999999999999999998654
No 248
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.35 E-value=0.044 Score=60.88 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=24.1
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+|+|+|++||||||+++.|...+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3467899999999999999999997653
No 249
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.35 E-value=0.042 Score=52.71 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=24.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
.++-|+|+|+||+||||++-.|.+.+.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~rG~ 41 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDRGH 41 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHTTC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHcCC
Confidence 467799999999999999999999863
No 250
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.34 E-value=0.046 Score=62.17 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.8
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+.+++|+||+||||||+.+.|....+
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 4678999999999999999999987753
No 251
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.31 E-value=0.039 Score=52.02 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
+.+.+|+|++|||||||.+.|.-.
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999998654
No 252
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.31 E-value=0.059 Score=61.33 Aligned_cols=28 Identities=36% Similarity=0.565 Sum_probs=24.9
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+.+++|+||+|||||||.+.|....+
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4678999999999999999999987753
No 253
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.30 E-value=0.038 Score=52.70 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.0
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...|+|+|++|||||||.+.|....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3579999999999999999998764
No 254
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.29 E-value=0.04 Score=59.55 Aligned_cols=44 Identities=16% Similarity=-0.029 Sum_probs=30.5
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPG 168 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~ 168 (672)
.++..|+|+|++|||||||.+.|...........+.||+.|..+
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G 61 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEA 61 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceee
Confidence 45779999999999999999999875321112234556555433
No 255
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.28 E-value=0.013 Score=61.21 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=21.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+.+++|+|+||||||||.+.|....
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 36799999999999999999997553
No 256
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.26 E-value=0.037 Score=56.77 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=23.4
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
...+.+++|+|+||+||||++..|...
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 346789999999999999999988665
No 257
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.26 E-value=0.026 Score=52.11 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.2
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-|+|+|++|+|||||.+.|....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 3469999999999999999997653
No 258
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.25 E-value=0.054 Score=51.06 Aligned_cols=26 Identities=27% Similarity=0.531 Sum_probs=22.7
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
....|+|+|++|||||||.+.|....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44579999999999999999998764
No 259
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.23 E-value=0.043 Score=56.06 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=23.3
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++.++|+||||+||||+++.+....
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998875
No 260
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.22 E-value=0.042 Score=50.26 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=22.3
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+..|.|+|++|+|||++++.+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34568999999999999999998764
No 261
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.22 E-value=0.058 Score=61.18 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=24.9
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+.+++|+||+||||||+.+.|....+
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 4678999999999999999999987753
No 262
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.21 E-value=0.039 Score=56.44 Aligned_cols=22 Identities=23% Similarity=0.613 Sum_probs=20.6
Q ss_pred EEEeCCCCCChHHHHHHHHhcC
Q psy11425 130 FIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 130 IvLtGpsGSGKSTLa~~L~e~~ 151 (672)
++|+||||+||||+++.|....
T Consensus 47 vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc
Confidence 9999999999999999998764
No 263
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.20 E-value=0.045 Score=56.58 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=23.7
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..++.|.|+||||+||||+++.+....
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346789999999999999999998875
No 264
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.19 E-value=0.044 Score=62.18 Aligned_cols=29 Identities=31% Similarity=0.329 Sum_probs=25.0
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
...+.+++|+||+||||||+.+.|....+
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 34688999999999999999999877653
No 265
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=93.16 E-value=0.23 Score=48.64 Aligned_cols=146 Identities=10% Similarity=0.072 Sum_probs=82.3
Q ss_pred HHHHHHcCCccEEEeeCCCCCCCCCCCeEEEEecCCCCCCceEEecCC----CCCcCCCCCCeeecCcHHHHHHHHHhCC
Q psy11425 426 LEMAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY----ISLSTLPKNAVVGTNSLRRKVLIKSFFP 501 (672)
Q Consensus 426 le~aLl~~~~D~aVHSlKD~p~~~~~gl~i~a~~~R~d~~D~lv~~~~----~~~~~lp~~~~iGTsS~RR~~ql~~~~p 501 (672)
+-++|.+|++|+++.++---|. ....+.+..+. ......+++.+++ .++++| .|.+||+..---........|
T Consensus 82 ~~~~l~~g~~D~~~~~~~~~~~-r~~~~~~~p~~-~~~~~~~~~~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~l~~~~ 158 (268)
T 3qax_A 82 LILNLKKHRIDAILAGMSITPS-RQKEIALLPYY-GDEVQELMVVSKRSLETPVLPLT-QYSSVAVQTGTYQEHYLLSQP 158 (268)
T ss_dssp HHHHHHHTSSSEECSCCBCCHH-HHTTSEEEEEE-CCCBCEEEEEEETTSCSCCCCGG-GSSCEEEETTSHHHHHHHTST
T ss_pred HHHHHhCCCccEEeecCccCHh-Hhcceeeecce-ecccceEEEEECCCCCCCCHHHh-CCCEEEEecCcHHHHHHHhCC
Confidence 4578899999999865432222 12223332221 1133445555432 456777 477777654444444445588
Q ss_pred CCeEEcccCCHHHHHhhhcCCCCCEeehhHhhHhhcCCCCceeeecCCCCCCCCCCCceEEEEEecCcHHHHHHh
Q psy11425 502 SLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 576 (672)
Q Consensus 502 ~~~~~~iRGNv~tRl~kl~~g~~daiilA~Agl~Rl~~~~~~~~~l~~~~~~pa~gQGalave~r~~d~~~~~~l 576 (672)
+.+++... |.+.-++.|.+|++||++.-..-+..+--...-...+. ..+.+.+-.--+++-++++++++.+.+
T Consensus 159 ~~~~~~~~-~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~~l~~~l 231 (268)
T 3qax_A 159 GICVRSFD-STLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPNLVATR-LELPPECWVLGCGLGVAKDRPEEIQTI 231 (268)
T ss_dssp TCCEEEES-CHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEE-EECCGGGCBCCEEEEECTTCHHHHHHH
T ss_pred CceEEecC-CHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCcEEec-CccCcccccccEEEEEeCCCHHHHHHH
Confidence 99988764 78899999999999999986665544321111011111 111111101116788888887655444
No 266
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.15 E-value=0.046 Score=61.53 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=25.0
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+..+.+++|+||+||||||+++.|....
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34567899999999999999999997764
No 267
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.14 E-value=0.041 Score=57.04 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=22.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+.+++|+||||||||||.+.|....
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc
Confidence 5799999999999999999997654
No 268
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=93.09 E-value=0.042 Score=58.04 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=22.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
.+.+|+|-|+.||||||+++.|.+...
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 457999999999999999999988753
No 269
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.04 E-value=0.049 Score=55.22 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=23.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++-+.|+||||+||||+++.+....
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 45679999999999999999998875
No 270
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=93.02 E-value=0.17 Score=52.32 Aligned_cols=176 Identities=11% Similarity=0.058 Sum_probs=95.8
Q ss_pred HHHHHHhhCCCceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEE--eeC--CCCCCCC-CCCeEEEE
Q psy11425 383 VRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAV--HSL--KDIPMNL-PSGFILCA 457 (672)
Q Consensus 383 v~~~l~~~~p~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aV--HSl--KD~p~~~-~~gl~i~a 457 (672)
+...|++. |+++|++.+..-.+ ..+||.+|++|++. |.. ...-..- ...|+.++
T Consensus 56 ~~~~~~~~--G~~Ve~~~f~~~~~-------------------~~~AL~~G~iD~~~~~~~~~l~~~~~~~~g~~l~~v~ 114 (295)
T 1p99_A 56 VKELAKKD--DIDVEIKHFSDYNL-------------------PNKALNDGDIDMNAFQHFAFLDQYKKAHKGTKISALS 114 (295)
T ss_dssp HHHHHGGG--TCCEEEEECSSTTS-------------------HHHHHHTTSSSEEEEEEHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHc--CCeEEEEEeCChHH-------------------HHHHHHcCCCCEEccCCHHHHHHHHHhcCCCCEEEEE
Confidence 45677765 89999987765332 26799999999997 421 0000000 11233333
Q ss_pred ecCCCCCCceEEecCCCCCcCCCCCCeeec----CcHHHHHHHHHhC----------------------CCCeEEcccCC
Q psy11425 458 ILKREDPRDAFISNDYISLSTLPKNAVVGT----NSLRRKVLIKSFF----------------------PSLIIKSLRGN 511 (672)
Q Consensus 458 ~~~R~d~~D~lv~~~~~~~~~lp~~~~iGT----sS~RR~~ql~~~~----------------------p~~~~~~iRGN 511 (672)
....+ | ..+.+.+.+++++||+|.+||+ |+-=|..+++... .+++++++-..
T Consensus 115 ~~~~~-p-~g~ys~~iksl~DL~~Gk~IAip~~~s~~~~~l~lL~~~Gli~l~~~~~~~~t~~dI~~np~~v~~v~~~~~ 192 (295)
T 1p99_A 115 TTVLA-P-LGIYSDKIKDVKKVKDGAKVVIPNDVSNQARALKLLEAAGLIKLKKDFGLAGTVKDITSNPKHLKITAVDAQ 192 (295)
T ss_dssp EEEEC-C-CEEECSSCSCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTTCCGGGEEECTTCCEEEEECGG
T ss_pred eeccc-c-ceeecCCCCChHHcCCCCEEEecCCCcHHHHHHHHHHHCCCccccCCCCCcCChhhhhcCCCceEEEEcCHH
Confidence 33222 2 4566777889999999999964 4445555554321 25778776542
Q ss_pred HHHHHhhhcCCCCCEeehhHhhHhhcCCCCc-eeeecC-CCCCCCCCCCceEEEEEec---CcHHHHHHhhccCChhhHH
Q psy11425 512 IDTRLNKLDKGEYAAIILAAAGLKRLNLQKR-IRMLFS-PNQILPAPGQGAIAIEILD---NRKELMEMLIPLNHYFSEQ 586 (672)
Q Consensus 512 v~tRl~kl~~g~~daiilA~Agl~Rl~~~~~-~~~~l~-~~~~~pa~gQGalave~r~---~d~~~~~~l~~i~~~~t~~ 586 (672)
-- .+-| |+.||+++..-=....|+... -.-+++ +..... ..-+-.+.+|+ +++.+..+++.++++++..
T Consensus 193 ~~--~~al--~~VDaa~i~~~~a~~ag~~~~~~~i~~e~~~~~~~--~~~~n~ivvr~~~~~~~~vk~l~~a~~s~ev~~ 266 (295)
T 1p99_A 193 QT--ARAL--SDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAV--KPYINIVAVNDKDLDNKTYAKIVELYHSKEAQK 266 (295)
T ss_dssp GT--TGGG--GTSSEEEECHHHHHHTTCCTTTSCSEECCCSSGGG--GGGEEEEEEEGGGTTCHHHHHHHHHHHSHHHHH
T ss_pred HH--HHHh--hcCCEEEECcHHHHHcCCCcccceEEecCCcccCC--CceeEEEEEeCCccChHHHHHHHHHHCCHHHHH
Confidence 21 2223 589999874321222233211 011233 222100 01223345664 4577888888888877644
Q ss_pred h
Q psy11425 587 T 587 (672)
Q Consensus 587 ~ 587 (672)
-
T Consensus 267 ~ 267 (295)
T 1p99_A 267 A 267 (295)
T ss_dssp H
T ss_pred H
Confidence 3
No 271
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.00 E-value=0.052 Score=59.15 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=23.5
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+|+|+||+||||||+.+.|....
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 456799999999999999999987764
No 272
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.00 E-value=0.061 Score=49.71 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=23.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.....|+|+|++|||||||.+.|....
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 345689999999999999999997653
No 273
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.98 E-value=0.054 Score=51.75 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.5
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..|+|+|++|||||||.+.|....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 579999999999999999998763
No 274
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.97 E-value=0.043 Score=53.23 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.|+|+|.+||||||+++.|...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999765
No 275
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=92.95 E-value=0.063 Score=55.77 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=22.0
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...|+|+|.||+|||||.+.|....
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3579999999999999999998663
No 276
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.94 E-value=0.049 Score=53.04 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.|+|+|.+|||||||++.|...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999865
No 277
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.87 E-value=0.054 Score=61.49 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=24.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+||||||+.+.|....
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998775
No 278
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.80 E-value=0.051 Score=59.32 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=22.4
Q ss_pred ccceE--EEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNI--FIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~ki--IvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.+ ++|+|++|||||||.+.|...
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 45667 999999999999999999765
No 279
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.80 E-value=0.065 Score=54.91 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=22.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+..++|+||||+|||++++.+.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999998776653
No 280
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.71 E-value=0.052 Score=55.18 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=20.4
Q ss_pred EEEeCCCCCChHHHHHHHHhcC
Q psy11425 130 FIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 130 IvLtGpsGSGKSTLa~~L~e~~ 151 (672)
++|+||||+||||+++.|....
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 8999999999999999998764
No 281
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.68 E-value=0.042 Score=52.97 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.3
Q ss_pred EEEEeCCCCCChHHHHHHHHhcC
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+|.|+|++||||||++..|...+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~~ 23 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGDA 23 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCSC
T ss_pred CEEEECCCCCcHHHHHHHHHhcC
Confidence 37899999999999999998763
No 282
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.67 E-value=0.049 Score=51.36 Aligned_cols=23 Identities=35% Similarity=0.639 Sum_probs=20.5
Q ss_pred eEEEEeCCCCCChHHHHHHHHhc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..|+|+|++|||||||.+.|...
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
No 283
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.61 E-value=0.071 Score=48.32 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.7
Q ss_pred eEEEEeCCCCCChHHHHHHHHhc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.-|+|+|++|||||||.+.|...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999765
No 284
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.60 E-value=0.049 Score=55.44 Aligned_cols=25 Identities=36% Similarity=0.499 Sum_probs=22.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHh
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLK 149 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e 149 (672)
..+.+++|+||+|||||||+..+..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3578999999999999999998865
No 285
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=92.60 E-value=0.94 Score=45.55 Aligned_cols=166 Identities=14% Similarity=0.114 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhhCCCceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEEeeCCCCCCCCCCCeEEEEe
Q psy11425 379 QAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLKDIPMNLPSGFILCAI 458 (672)
Q Consensus 379 Q~~~v~~~l~~~~p~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aVHSlKD~p~~~~~gl~i~a~ 458 (672)
-.+.+.+.+.. ||++++++.... + ++..+|.+|++|+++-++-.-| +....+.+..
T Consensus 84 l~~~i~~~~~~--~g~~v~~~~~~~--~------------------~~~~~l~~G~~D~~~~~~~~~~-~r~~~~~~~~- 139 (291)
T 2yjp_A 84 IAKDLAKDLLG--SPDKVEFVLTEA--A------------------NRVEYVRSGKVDLILANFTQTP-ERAEAVDFAD- 139 (291)
T ss_dssp HHHHHHHHHHS--CGGGEEEEECCG--G------------------GHHHHHHTTSCSEECSSCBCCH-HHHTTEEECC-
T ss_pred HHHHHHHHhcc--CCceEEEEEccH--H------------------HHHHHHhCCCeeEEEeCCCCCh-HHHccceecc-
Confidence 34445555533 789998887531 1 2578999999999986432111 1112222211
Q ss_pred cCCCCCCceEEecCC---CCCcCCCCCCeeecCcHH-HHHHHHHhCCCCeEEcccCCHHHHHhhhcCCCCCEeehhHhhH
Q psy11425 459 LKREDPRDAFISNDY---ISLSTLPKNAVVGTNSLR-RKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGL 534 (672)
Q Consensus 459 ~~R~d~~D~lv~~~~---~~~~~lp~~~~iGTsS~R-R~~ql~~~~p~~~~~~iRGNv~tRl~kl~~g~~daiilA~Agl 534 (672)
+=-....+++++++ .++++| .|.+||+..-- =...+...+|+++++... +.+.-+..|.+|++||++....-+
T Consensus 140 -p~~~~~~~l~~~~~~~i~sl~dL-~gk~v~~~~g~~~~~~l~~~~~~~~~~~~~-~~~~~~~~l~~G~vDa~~~~~~~~ 216 (291)
T 2yjp_A 140 -PYMKVALGVVSPKNKPITDMAQL-KDQTLLVNKGTTADAFFTKSHPEVKLLKFD-QNTETFDALKDGRGVALAHDNALL 216 (291)
T ss_dssp -CCEEECEEEEEETTSCCCSGGGG-TTSEEEEETTSHHHHHHHHHCTTSEEEEES-SHHHHHHHHHTTSSSEEEEEHHHH
T ss_pred -CeeecceEEEEeCCCCCCCHHHh-CCCEEEEecCCcHHHHHHHhCCCceEEEeC-CHHHHHHHHHcCCccEEEecHHHH
Confidence 11112345565543 467888 48888764211 123466677899888764 889999999999999999865544
Q ss_pred hhcCCC-CceeeecCCCCCCCCCCCceEEEEEecCcHHHHHHh
Q psy11425 535 KRLNLQ-KRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 576 (672)
Q Consensus 535 ~Rl~~~-~~~~~~l~~~~~~pa~gQGalave~r~~d~~~~~~l 576 (672)
..+--. ..+ ..++. |-.....+++-++++++++.+.+
T Consensus 217 ~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~k~~~~l~~~l 254 (291)
T 2yjp_A 217 WAWAKENPNF-EVAIG----NLGPAEFIAPAVQKGNADLLNWV 254 (291)
T ss_dssp HHHHHHCTTE-EEEEC----CSSSCEEECCEEETTCHHHHHHH
T ss_pred HHHHHhCCCe-EEcCC----cccCCcceEEEEeCCCHHHHHHH
Confidence 332110 112 12221 11122334777888877555444
No 286
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=92.58 E-value=0.42 Score=48.19 Aligned_cols=173 Identities=17% Similarity=0.142 Sum_probs=102.2
Q ss_pred HHHHHHHhhCCCceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEE--ee--CCCCCCCCCCCeEEEE
Q psy11425 382 YVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAV--HS--LKDIPMNLPSGFILCA 457 (672)
Q Consensus 382 ~v~~~l~~~~p~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aV--HS--lKD~p~~~~~gl~i~a 457 (672)
.|+..|++. |+++|++.++.--. ...||.+|+||+.. |. |...-..-.-.|+.++
T Consensus 21 ~v~~~l~k~--Gi~veiv~F~dy~~-------------------pN~AL~~G~iD~n~fQh~pyl~~~~k~~g~~Lv~v~ 79 (246)
T 4ef1_A 21 HVKPLLEKE--GVKLEVTTYTDYVL-------------------PNKALESGDIDANYFQHVPFFNEAVKENDYDFVNAG 79 (246)
T ss_dssp HHHHHHHHT--TEEEEEEECSSSSH-------------------HHHHHHHTSCSEEEEEEHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHhc--CCEEEEEEeCCchh-------------------HHHHHHCCCCCEEecCCHHHHHHHHHHCCCCEEEEe
Confidence 477778774 89999988764211 25699999999986 32 1000000111233333
Q ss_pred ecCCCCCCceEEecCCCCCcCCCCCCeeecCc----HHHHHHHHHh------CC-----------------CCeE-Eccc
Q psy11425 458 ILKREDPRDAFISNDYISLSTLPKNAVVGTNS----LRRKVLIKSF------FP-----------------SLII-KSLR 509 (672)
Q Consensus 458 ~~~R~d~~D~lv~~~~~~~~~lp~~~~iGTsS----~RR~~ql~~~------~p-----------------~~~~-~~iR 509 (672)
-..-+ | =.+.|++++++++||.|++|+.+. .=|.-+|+.. .+ +++| +++-
T Consensus 80 ~~~~~-p-~glYS~kiksl~dL~~Ga~IAIpnd~sn~~RaL~lL~~~GLI~Lk~~~~~~~~t~~DI~~Npk~l~~~~el~ 157 (246)
T 4ef1_A 80 AIHLE-P-VGLYSKKYKSLQEIPDGSTIYVSSSVSDWPRVLTILEDAGLITLKEGVDRTTATFDDIDKNTKKLKFNHESD 157 (246)
T ss_dssp EEEEC-C-CEEECSSCSSGGGSCTTCEEEEESCGGGHHHHHHHHHHTTSEEECTTCCGGGCCGGGEEEETTCCEEEEEEC
T ss_pred ecccc-c-eEEecCCCCCHHHcCCCCEEEeecCCchHHHHHHHHHHCCCeeecCCCCcCcCCHhHHhcCCCccEEeeecC
Confidence 22223 2 366788899999999999998654 3455555532 11 3577 7775
Q ss_pred CCHHHHHhhhcCCCCCEeehhHhhHhhcCCCC---ceeeecCCCCCCCCCCCceEEEEEec---CcHHHHHHhhccCChh
Q psy11425 510 GNIDTRLNKLDKGEYAAIILAAAGLKRLNLQK---RIRMLFSPNQILPAPGQGAIAIEILD---NRKELMEMLIPLNHYF 583 (672)
Q Consensus 510 GNv~tRl~kl~~g~~daiilA~Agl~Rl~~~~---~~~~~l~~~~~~pa~gQGalave~r~---~d~~~~~~l~~i~~~~ 583 (672)
. .+=-+-|.+|+.||.++---=...-|+.. .+ +++.. ..+=+.-|.+|+ +++.+..+.+.++.++
T Consensus 158 a--aql~~al~dg~vDaavin~n~a~~agl~p~~dal--~~E~~-----~~~y~n~i~vr~~~~~~~~~k~lv~~~~s~~ 228 (246)
T 4ef1_A 158 P--AIMTTLYDNEEGAAVLINSNFAVDQGLNPKKDAI--ALEKE-----SSPYANIIAVRKEDENNENVKKLVKVLRSKE 228 (246)
T ss_dssp G--GGHHHHHHTTCSSEEEECHHHHHHTTCCHHHHCS--EECSC-----CGGGCEEEEEEGGGTTCHHHHHHHHHHHSHH
T ss_pred H--HHHHHHhccccccEEEEechHHHHcCCCCccCce--EEcCC-----CCCeEEEEEEeccccCCHHHHHHHHHHcCHH
Confidence 3 23345678999999887432222223321 11 11211 123455666775 5678999999999887
Q ss_pred hHH
Q psy11425 584 SEQ 586 (672)
Q Consensus 584 t~~ 586 (672)
...
T Consensus 229 v~~ 231 (246)
T 4ef1_A 229 VQD 231 (246)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 287
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.58 E-value=0.075 Score=48.21 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=21.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-|+|+|++|||||||.+.|....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3569999999999999999998653
No 288
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.57 E-value=0.04 Score=50.40 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.8
Q ss_pred EEEEeCCCCCChHHHHHHHHhc
Q psy11425 129 IFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~ 150 (672)
-|+|+|++|||||||.+.|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5899999999999999999654
No 289
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=92.52 E-value=0.56 Score=48.82 Aligned_cols=132 Identities=14% Similarity=0.075 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEEeeCCCCCC----CCCCC
Q psy11425 377 IWQAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLKDIPM----NLPSG 452 (672)
Q Consensus 377 l~Q~~~v~~~l~~~~p~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aVHSlKD~p~----~~~~g 452 (672)
+++..-+.+.+.+. |++++++++...|.- .++-++|.+|++|+++-+. .|. .--..
T Consensus 29 ~a~~~gl~~~~~~~--G~~v~~~~~~~~g~~----------------~~~~~al~~G~~D~~~~~~--~~~~~~~~~g~~ 88 (348)
T 3uif_A 29 LVVNGAFPEELRKQ--GIKVEWVPAAMASVG----------------PVINEGFASGKIDFGIYGD--LPPIILNASKPT 88 (348)
T ss_dssp HHHHSSHHHHHHHT--TEEEEEEEECTTCHH----------------HHHHHHHHTTCCCEEEEES--HHHHHHHHHSCC
T ss_pred HHHHccHHHHHHhc--CCeEEEEecccCCCc----------------HHHHHHHHcCCCCEEecCc--HHHHHHHhCCCC
Confidence 44433366677665 899998777665531 2346899999999999443 221 11123
Q ss_pred eEEEEecCCCCCCceEEecC---CCCCcCCCCCCeeecC--cHH--H-HHHHHHhC---CCCeEEcccCCHHHHHhhhcC
Q psy11425 453 FILCAILKREDPRDAFISND---YISLSTLPKNAVVGTN--SLR--R-KVLIKSFF---PSLIIKSLRGNIDTRLNKLDK 521 (672)
Q Consensus 453 l~i~a~~~R~d~~D~lv~~~---~~~~~~lp~~~~iGTs--S~R--R-~~ql~~~~---p~~~~~~iRGNv~tRl~kl~~ 521 (672)
+.+.+.+-..++ -++|+++ .+++++| .|.+||++ |.- - ...|...- .+++++++ +....+.-|.+
T Consensus 89 ~~~v~~~~~~~~-~~lvv~~~s~i~s~~DL-kGk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~--~~~~~~~al~~ 164 (348)
T 3uif_A 89 VQLVAPWGTTSN-SYLVVPKNSTAKSIKDL-KGKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNV--NPQVGAAALAS 164 (348)
T ss_dssp EEEEEECCCCCC-CEEEEETTCCCCSGGGG-TTSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECC--CHHHHHHHHHH
T ss_pred EEEEEeccCCCc-eEEEEECCCCCCCHHHc-CCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEEC--CHHHHHHHHHc
Confidence 455544444433 4555543 3567888 58888764 221 1 11222222 24677766 56788999999
Q ss_pred CCCCEeehhHh
Q psy11425 522 GEYAAIILAAA 532 (672)
Q Consensus 522 g~~daiilA~A 532 (672)
|+.||+++...
T Consensus 165 G~vDa~~~~~~ 175 (348)
T 3uif_A 165 GTVDGFFSLFD 175 (348)
T ss_dssp TSSSEEEESTT
T ss_pred CCCCEEEechH
Confidence 99999987543
No 290
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.52 E-value=0.059 Score=51.36 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChHHHHHHHHhc
Q psy11425 129 IFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.++|+||+|+||||+++.+.+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999775
No 291
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=92.49 E-value=0.42 Score=51.95 Aligned_cols=55 Identities=25% Similarity=0.303 Sum_probs=30.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCC--CCCCcccccCCH
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPG--EKNGREYYFTNI 180 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~--E~~G~dY~fvs~ 180 (672)
...-|+|+|.||+|||||.+.|...........+.||+..... +.+|..+.+++.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT 230 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDT 230 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEEC
Confidence 3467999999999999999999876422223344566543221 223444555544
No 292
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.45 E-value=0.045 Score=60.43 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=24.7
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||++.|....
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3467899999999999999999998765
No 293
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=92.42 E-value=2 Score=41.21 Aligned_cols=136 Identities=10% Similarity=0.058 Sum_probs=79.3
Q ss_pred HHHHHHcCCccEEEeeCCCCCCCCCCCeEEEEecCCCCCCceEEecCCCCCcCCCCCCeeecCcHHHHHHHHHhCCCCeE
Q psy11425 426 LEMAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSLII 505 (672)
Q Consensus 426 le~aLl~~~~D~aVHSlKD~p~~~~~gl~i~a~~~R~d~~D~lv~~~~~~~~~lp~~~~iGTsS~RR~~ql~~~~p~~~~ 505 (672)
+-.+|.+|++|+++.++-.-|. ....+.+..-. - ....+++.+++. +.+| .| +||+..---........ ++++
T Consensus 56 ~~~~l~~g~~D~~~~~~~~t~~-r~~~~~fs~p~-~-~~~~~~~~~~~~-~~dL-~g-~igv~~g~~~~~~l~~~-~~~~ 128 (232)
T 3i6v_A 56 IIPNLVSGNYDTIIAGMSITDE-RDEVIDFTQNY-I-PPTASSYVATSD-GADL-SG-IVAAQTATIQAGYIAES-GATL 128 (232)
T ss_dssp HHHHHHTTSCSEECSSCBCCHH-HHTTSEEEEEE-E-CCCEEEEEESST-TCCT-TS-EEEEETTSHHHHHHHHS-SSEE
T ss_pred HHHHHHCCCCCEEEeCCcCCHH-HHhhcCccccc-c-cCCeEEEEECCC-hHHh-CC-CEEEecCchHHHHHHhc-CCeE
Confidence 4578999999998876533332 22233333211 1 133466665543 7788 46 98875443333333333 6788
Q ss_pred EcccCCHHHHHhhhcCCCCCEeehhHhhH----hhcCCCCceeeecCCCCCCCCCCCceEEEEEecCcHHHHHHh
Q psy11425 506 KSLRGNIDTRLNKLDKGEYAAIILAAAGL----KRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 576 (672)
Q Consensus 506 ~~iRGNv~tRl~kl~~g~~daiilA~Agl----~Rl~~~~~~~~~l~~~~~~pa~gQGalave~r~~d~~~~~~l 576 (672)
+... |.+.-++.|.+|++||+|.-..-+ ++.+....+ +.. |.....-+++-++++++++.+.+
T Consensus 129 ~~~~-~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~k~~~~l~~~l 195 (232)
T 3i6v_A 129 VEFA-TPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMF---VGD----DVPLGGGVGMGLRESDGELRGKF 195 (232)
T ss_dssp EEES-SHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTTSSEE---EEE----EEECSSCEEEEECTTCHHHHHHH
T ss_pred EEeC-CHHHHHHHHHcCCcCEEEEChHHHHHHHHhCCCCeEE---ecC----CCCCCCcEEEEEeCCCHHHHHHH
Confidence 7765 888999999999999999755544 333322111 111 11122346777788887655544
No 294
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=92.41 E-value=0.055 Score=57.21 Aligned_cols=27 Identities=19% Similarity=0.052 Sum_probs=24.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
.+++|+|-|+.||||||+++.|.+.+.
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999999998763
No 295
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.40 E-value=0.057 Score=53.06 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=21.6
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.+++|+|||||||||++..+...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999998777543
No 296
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.38 E-value=0.077 Score=48.31 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=21.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|++|||||||.+.|...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999865
No 297
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.37 E-value=0.066 Score=61.16 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=24.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+||||||+.+.|....
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 457899999999999999999998764
No 298
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=92.35 E-value=0.24 Score=49.81 Aligned_cols=140 Identities=8% Similarity=0.056 Sum_probs=76.4
Q ss_pred HHHHHHcCCccEEEeeCCCCCCCCCCCeEEEEecCCCCCCceEEecC---CCCCcCCCCCCeeecCcHHHHH-HHHHhCC
Q psy11425 426 LEMAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISND---YISLSTLPKNAVVGTNSLRRKV-LIKSFFP 501 (672)
Q Consensus 426 le~aLl~~~~D~aVHSlKD~p~~~~~gl~i~a~~~R~d~~D~lv~~~---~~~~~~lp~~~~iGTsS~RR~~-ql~~~~p 501 (672)
+..+|.+|++|+++-++-....+....+.+.. +=-...-++++++ ..++++| .|.+||+..---.. .|...
T Consensus 108 ~~~~l~~G~~D~~~~~~~~~t~~r~~~~~~~~--p~~~~~~~l~~~~~~~i~s~~dL-~G~~v~v~~g~~~~~~l~~~-- 182 (283)
T 2yln_A 108 MMAGLKAGRFDVVANQVGLTSPERQATFDKSE--PYSWSGAVLVAHNDSNIKSIADI-KGVKTAQSLTSNYGEKAKAA-- 182 (283)
T ss_dssp HHHHHHHTSCSEECSSCCCCSHHHHHHEEECS--CSEEECEEEEEETTCSCCSGGGC-TTSEEEECTTSHHHHHHHHT--
T ss_pred HHHHHHCCCcCEEEecCccCChhhhcceEecc--CeeeecEEEEEECCCCCCCHHHh-CCCEEEEecCchHHHHHHHc--
Confidence 36789999999998654320111111222211 1111223455554 3578888 78899874332222 33333
Q ss_pred CCeEEcccCCHHHHHhhhcCCCCCEeehhHhh----HhhcCCCCceeeecCCCCCCCCCCCceEEEEEecCcHHHHHHh
Q psy11425 502 SLIIKSLRGNIDTRLNKLDKGEYAAIILAAAG----LKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 576 (672)
Q Consensus 502 ~~~~~~iRGNv~tRl~kl~~g~~daiilA~Ag----l~Rl~~~~~~~~~l~~~~~~pa~gQGalave~r~~d~~~~~~l 576 (672)
+++++... +...-+..|.+|++||++.-..- ++..+.. .+ .++....+-+ ..-+++-++++++++.+.+
T Consensus 183 ~~~~~~~~-~~~~~~~~l~~g~vDa~i~~~~~~~~~~~~~~~~-~l-~~~~~~~~~~---~~~~~i~~~k~~~~l~~~i 255 (283)
T 2yln_A 183 GAQLVPVD-GLAQSLTLIEQKRADATLNDELAVLDYLKKNPNA-GV-KIVWSAPADE---KVGSGLIVNKGNDEAVAKF 255 (283)
T ss_dssp TCEEEECS-SHHHHHHHHHTTSCCEEEEEHHHHHHHHHHSTTS-SE-EEEEECCGGG---CEEECCEEESSCHHHHHHH
T ss_pred CCeEEEeC-CHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCC-cE-EEccCcccCC---cccEEEEEeCCCHHHHHHH
Confidence 67776654 78889999999999999975443 3333332 12 1222011110 2346677788876544443
No 299
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.33 E-value=0.058 Score=55.97 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.+.+|+|+|++||||||++..|...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999998754
No 300
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.30 E-value=0.07 Score=48.20 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.6
Q ss_pred eEEEEeCCCCCChHHHHHHHHhc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.-|+++|++|||||||.+.|...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999765
No 301
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.27 E-value=0.067 Score=48.98 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=19.8
Q ss_pred EEEEeCCCCCChHHHHHHHHhc
Q psy11425 129 IFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~ 150 (672)
-|+|+|++|||||||.+.|...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999754
No 302
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.16 E-value=0.08 Score=49.86 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
....|+|+|++|||||||.+.|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999865
No 303
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.16 E-value=0.086 Score=65.59 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=26.2
Q ss_pred ccccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 123 FKSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 123 ~~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+++..++|+||||||||||++.|...++
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 345788999999999999999999988764
No 304
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.14 E-value=0.057 Score=60.40 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=23.7
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
.+..|+|+||+||||||+++.|....+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 466799999999999999999987754
No 305
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=92.13 E-value=0.42 Score=45.21 Aligned_cols=107 Identities=16% Similarity=0.184 Sum_probs=67.5
Q ss_pred HHHHHHHHcCCccEEEeeCCCCCCCCCCCeEEEEecCCCCCCceEEecCC----CCCcCCCCCCeeecCcHHH-HHHHHH
Q psy11425 424 KELEMAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY----ISLSTLPKNAVVGTNSLRR-KVLIKS 498 (672)
Q Consensus 424 kele~aLl~~~~D~aVHSlKD~p~~~~~gl~i~a~~~R~d~~D~lv~~~~----~~~~~lp~~~~iGTsS~RR-~~ql~~ 498 (672)
+++..+|.+|++|+++-++-.-| +....+.+.. +=-....+++++++ .++++| .|.+||+..--- ...+..
T Consensus 51 ~~~~~~l~~g~~D~~~~~~~~~~-~r~~~~~~s~--p~~~~~~~l~~~~~~~~~~~~~dL-~g~~v~~~~g~~~~~~l~~ 126 (227)
T 3tql_A 51 DSLIPSLKLGKFDALFGGMNITT-ARQKEVDFTD--PYYTNSVSFIADKNTPLTLSKQGL-KGKIIGVQGGTTFDSYLQD 126 (227)
T ss_dssp HHHHHHHHHTSCSEECSSCBCCT-TGGGTEEECS--CSBCCEEEEEEETTSCCCCSTTTT-TTCEEEEETTSHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEecCcCCH-hHHhheeccc--ceeccceEEEEeCCCCCCCCHHHh-CCCEEEEEecccHHHHHHH
Confidence 35678899999999975442112 2222222221 11223455666543 467777 477777643222 455666
Q ss_pred hCCC-CeEEcccCCHHHHHhhhcCCCCCEeehhHhhHh
Q psy11425 499 FFPS-LIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLK 535 (672)
Q Consensus 499 ~~p~-~~~~~iRGNv~tRl~kl~~g~~daiilA~Agl~ 535 (672)
..|+ ++++... |.+.-++.|..|.+||++....-+.
T Consensus 127 ~~~~~~~~~~~~-~~~~~~~~l~~grvDa~~~~~~~~~ 163 (227)
T 3tql_A 127 SFGNSITIQRYP-SEEDALMDLTSGRVDAVVGDTPLIK 163 (227)
T ss_dssp HHGGGSEEEEES-SHHHHHHHHTTTSSSEEESCHHHHH
T ss_pred hccccceEEEcC-CHHHHHHHHHcCCcCEEEeChHHHH
Confidence 6777 8887664 7889999999999999998665443
No 306
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=92.10 E-value=0.41 Score=50.60 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=22.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
....|+|+|++|||||||.+.|....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999997664
No 307
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.09 E-value=0.072 Score=59.94 Aligned_cols=28 Identities=36% Similarity=0.368 Sum_probs=24.6
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...+.+++|+||+|||||||++.|.-..
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567899999999999999999998764
No 308
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.09 E-value=0.067 Score=58.23 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+.+++|+|++||||||+.+.|....
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 45599999999999999999998754
No 309
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.09 E-value=0.081 Score=48.81 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=21.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
...-|+|+|.+|||||||.+.|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999876
No 310
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.08 E-value=0.087 Score=53.89 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.7
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..++|+||+|+||||+++.|....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 479999999999999999998764
No 311
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=92.06 E-value=0.36 Score=46.82 Aligned_cols=141 Identities=10% Similarity=0.049 Sum_probs=81.4
Q ss_pred HHHHHHHcCCccEEEeeCCCCCCCCCCCeEEEEecCCCCCCceEEecCC-----CCCcCCCC-CCeeecCcHHH-HHHHH
Q psy11425 425 ELEMAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY-----ISLSTLPK-NAVVGTNSLRR-KVLIK 497 (672)
Q Consensus 425 ele~aLl~~~~D~aVHSlKD~p~~~~~gl~i~a~~~R~d~~D~lv~~~~-----~~~~~lp~-~~~iGTsS~RR-~~ql~ 497 (672)
++-.+|.+|++|+++.++-.-|. ....+.+.. +=-....++++++. .++++|.. |.+||+..--- ...+.
T Consensus 55 ~~~~~l~~g~~D~~~~~~~~t~~-r~~~~~~s~--p~~~~~~~~~~~~~~~~~i~~~~dL~~~g~~i~v~~g~~~~~~l~ 131 (245)
T 3k4u_A 55 GLIPGLVTEKFDIIISGMTISQE-RNLRVNFVE--PYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEYAAK 131 (245)
T ss_dssp GHHHHHHTTSCSEECSSCBCCHH-HHTTSEECS--CSEEECEEEEEETTTTTTCCSGGGGCCSSCEEEEETTSHHHHHHH
T ss_pred HHHHHHhCCCcCEEEecCcCCHH-HHhhcCcch--hhheeceEEEEECCcccccCCHHHhccCCcEEEEeCCcHHHHHHH
Confidence 35678999999998765432221 111122111 11112234554433 35777753 77777643322 34566
Q ss_pred HhCCCCeEEcccCCHHHHHhhhcCCCCCEeehhHhhH----hhcCCCCceeeecCCCCCCCCCCCceEEEEEecCcHHHH
Q psy11425 498 SFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGL----KRLNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELM 573 (672)
Q Consensus 498 ~~~p~~~~~~iRGNv~tRl~kl~~g~~daiilA~Agl----~Rl~~~~~~~~~l~~~~~~pa~gQGalave~r~~d~~~~ 573 (672)
..+|+.+++... |.+.-++.|.+|.+||+|....-+ .+.+. ..+ ..+.. .....-+++-++++++++.
T Consensus 132 ~~~~~~~~~~~~-~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~-~~~-~~~~~-----~~~~~~~~~~~~k~~~~l~ 203 (245)
T 3k4u_A 132 RLFKNAKLKTYD-TEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQ-GYL-VHLDT-----SLTYEPLGWAIKKGDPDFL 203 (245)
T ss_dssp HHCSSSEEEEES-SHHHHHHHHHSSSSEEEEEEHHHHHHHHHHTTT-TTE-EEECC-----CCSCEEECCEECTTCHHHH
T ss_pred hhCCcCCEEEeC-CHHHHHHHHHcCCCcEEEEcHHHHHHHHhcCCc-cce-eecCC-----CcccccEEEEEcCCCHHHH
Confidence 678999998776 788889999999999999865443 33342 222 12221 1123456777888887554
Q ss_pred HHh
Q psy11425 574 EML 576 (672)
Q Consensus 574 ~~l 576 (672)
+.+
T Consensus 204 ~~l 206 (245)
T 3k4u_A 204 NWL 206 (245)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 312
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.06 E-value=0.059 Score=55.93 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
+..++|+||+|+||||+++.+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999775
No 313
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.05 E-value=0.078 Score=48.29 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=20.9
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.-|+|+|++|||||||.+.|....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999997653
No 314
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.04 E-value=0.068 Score=54.48 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=22.0
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+..++|+||||+|||++++.+.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999998764
No 315
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.01 E-value=0.1 Score=52.23 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=22.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
....|+|+|.+|||||||.+.|....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 34679999999999999999998653
No 316
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.99 E-value=0.092 Score=47.75 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.6
Q ss_pred eEEEEeCCCCCChHHHHHHHHhc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.-|+|+|.+|||||||.+.|...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999865
No 317
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.93 E-value=0.11 Score=47.61 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|++|||||||.+.|...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999765
No 318
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.93 E-value=0.083 Score=48.75 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-|+|+|++|||||||.+.|....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3469999999999999999998653
No 319
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.93 E-value=0.095 Score=48.40 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-|+|+|++|||||||.+.|....
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3569999999999999999997653
No 320
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.91 E-value=0.11 Score=48.71 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-|+|+|++|||||||.+.|....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4569999999999999999998763
No 321
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.90 E-value=0.085 Score=48.15 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=21.3
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.-|+|+|++|||||||.+.|....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998763
No 322
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.90 E-value=0.086 Score=48.20 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=21.2
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|++|||||||.+.|...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346999999999999999999865
No 323
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.89 E-value=0.071 Score=51.17 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=19.7
Q ss_pred cceEEEEeCCCCCChHHHHHHHHh
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLK 149 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e 149 (672)
++++++++||+||||||++-.+..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999855543
No 324
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.88 E-value=0.071 Score=56.58 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=24.4
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+.+.++.|+||+|||||||+..|....
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999997654
No 325
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.82 E-value=0.082 Score=55.29 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=22.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++-|.|+||||+|||++++.+....
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 34679999999999999999998765
No 326
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.73 E-value=0.095 Score=51.82 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=22.8
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
....-|+|+|++|||||||.+.|....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 345679999999999999999998764
No 327
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.73 E-value=0.1 Score=47.67 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.7
Q ss_pred eEEEEeCCCCCChHHHHHHHHhc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.-|+|+|++|||||||.+.|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 328
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.67 E-value=0.088 Score=49.49 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.....|+|+|++|||||||.+.|...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999765
No 329
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.66 E-value=0.097 Score=57.26 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.+.+|+++|++||||||++..|...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999988754
No 330
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=91.61 E-value=0.13 Score=54.92 Aligned_cols=40 Identities=28% Similarity=0.174 Sum_probs=26.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMR 166 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r 166 (672)
|+..|+|+|.||+|||||.+.|...... ....+.||..|.
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~~~~~-v~~~p~tTi~p~ 40 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTKAGIE-AANYPFCTIEPN 40 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceECce
Confidence 4567999999999999999999876421 112344565553
No 331
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.59 E-value=0.09 Score=53.28 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=21.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...|+|+|++|||||||.+.|....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999997653
No 332
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.59 E-value=0.11 Score=47.93 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHH
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELL 148 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~ 148 (672)
.+.+.+|+||.|||||||...+.
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999885
No 333
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.57 E-value=0.082 Score=55.96 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+..|+|+||||+|||++++.|.+..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999998875
No 334
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.55 E-value=0.11 Score=50.14 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...|+|+|++|||||||.+.|....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998764
No 335
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.55 E-value=0.081 Score=48.29 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=21.0
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.-|+|+|++|||||||.+.|....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 458999999999999999998653
No 336
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=91.54 E-value=0.05 Score=54.70 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=21.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
++-++|+||||+|||++++.+....
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3448899999999999999998763
No 337
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.51 E-value=0.084 Score=48.62 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=21.0
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|++|||||||.+.|...
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999854
No 338
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.50 E-value=0.094 Score=55.18 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=21.5
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+.++|+||+|+||||+++.+....
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999999997764
No 339
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.46 E-value=0.054 Score=59.51 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.7
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
+.+.|+|+|.||||||||.+.|...
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3568999999999999999999765
No 340
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.44 E-value=0.11 Score=55.07 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=22.5
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.+..+|+|+|++|+||||+++.|...
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999998654
No 341
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.42 E-value=0.098 Score=47.63 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.2
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|++|||||||.+.|...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999864
No 342
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.41 E-value=0.13 Score=47.49 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=21.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|++|||||||.+.|...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346999999999999999999765
No 343
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.39 E-value=0.1 Score=54.66 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+|+|+|++||||||++..|....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999887653
No 344
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.39 E-value=0.083 Score=55.53 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=22.5
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
++.++|+||||+|||++++.+.+..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 345
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.38 E-value=0.088 Score=59.23 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.9
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||++.|....
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357799999999999999999998765
No 346
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.37 E-value=0.068 Score=66.52 Aligned_cols=52 Identities=27% Similarity=0.282 Sum_probs=35.2
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccCCCCCCCCcccccCCHHHHHH
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKK 185 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~r~~E~~G~dY~fvs~~~F~~ 185 (672)
..++..|+|+|+||||||||++.|...++...-.+ ..||.|..-.+.+.+.+
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I----------~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI----------FIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEE----------EETTEETTTBCHHHHHT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEE----------EECCEEhhhCCHHHHHh
Confidence 35678999999999999999999987753211011 24566666555555443
No 347
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.34 E-value=0.096 Score=54.53 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++-|.|+||||+|||++++.+....
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 34679999999999999999998763
No 348
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.33 E-value=0.096 Score=48.32 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|++|||||||.+.|...
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999754
No 349
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.33 E-value=0.099 Score=48.78 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.2
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|++|||||||.+.|...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999999864
No 350
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=91.32 E-value=0.093 Score=55.59 Aligned_cols=28 Identities=18% Similarity=-0.002 Sum_probs=25.0
Q ss_pred ccceEEEEeCCCCCChHHHH-HHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLV-NELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa-~~L~e~~~ 152 (672)
..+.+|+|-|+.||||||++ +.|.+..+
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~ 38 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAI 38 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999999999 99998864
No 351
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.32 E-value=0.087 Score=51.94 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=21.7
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-++|.||||+||||++..|+...
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999988764
No 352
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.31 E-value=0.094 Score=58.15 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.7
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+++|+||+|||||||.+.|....
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 799999999999999999997653
No 353
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=91.28 E-value=1.7 Score=42.94 Aligned_cols=153 Identities=19% Similarity=0.213 Sum_probs=90.4
Q ss_pred CceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEEeeCCCCCCCCCCCeEEEEecCCCCCCceEEecC
Q psy11425 393 WCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISND 472 (672)
Q Consensus 393 ~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aVHSlKD~p~~~~~gl~i~a~~~R~d~~D~lv~~~ 472 (672)
|++++++...+ -.++-.+|.+|++|++. ++-.-| +....+.+.. +=-...-++++++
T Consensus 70 g~~~~~~~~~~-------------------~~~~~~~l~~G~~D~~~-~~~~t~-~r~~~~~fs~--p~~~~~~~l~~~~ 126 (267)
T 3mpk_A 70 GLDFEIIGVDT-------------------VEELIAKLRSGEADMAG-ALFVNS-ARESFLSFSR--PYVRNGMVIVTRQ 126 (267)
T ss_dssp CCEEEEEEESS-------------------HHHHHHHHHHTSCSEEE-EEECCG-GGTTTEEECS--CSEEECEEEEEES
T ss_pred CCeEEEEecCC-------------------HHHHHHHHHCCCccEEe-cccCCh-hhhcceEech--hhccCceEEEEEC
Confidence 68888876542 34567889999999976 332222 1222222221 1111224455543
Q ss_pred C----CCCcCCCCCCeeecCcHHH-HHHHHHhCCCCeEEcccCCHHHHHhhhcCCCCCEeehhHhhHh----hcCCCCce
Q psy11425 473 Y----ISLSTLPKNAVVGTNSLRR-KVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLK----RLNLQKRI 543 (672)
Q Consensus 473 ~----~~~~~lp~~~~iGTsS~RR-~~ql~~~~p~~~~~~iRGNv~tRl~kl~~g~~daiilA~Agl~----Rl~~~~~~ 543 (672)
. .++++| .|.+||+..--- ...|...+|+.+++.. .|.+.-+..|.+|++||+|.-..-+. +.+.. .+
T Consensus 127 ~~~~i~~~~dL-~g~~i~v~~g~~~~~~l~~~~~~~~~~~~-~~~~~~l~~L~~GrvDa~i~~~~~~~~~~~~~~~~-~l 203 (267)
T 3mpk_A 127 DPDAPVDADHL-DGRTVALVRNSAAIPLLQRRYPQAKVVTA-DNPSEAMLMVANGQADAVVQTQISASYYVNRYFAG-KL 203 (267)
T ss_dssp STTSCSSGGGC-TTCEEEEETTCTHHHHHHHHCTTSEEEEE-SSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTT-TE
T ss_pred CCCCCCCHHHH-CCCEEEEeCCchhHHHHHHhCCCcEEEEe-CCHHHHHHHHHcCCCCEEEecHHHHHHHHHhcCCC-ce
Confidence 3 356777 477777643222 3456778999999877 47899999999999999998755443 32221 12
Q ss_pred eeecCCCCCCCCCCCceEEEEEecCcHHHHHHh
Q psy11425 544 RMLFSPNQILPAPGQGAIAIEILDNRKELMEML 576 (672)
Q Consensus 544 ~~~l~~~~~~pa~gQGalave~r~~d~~~~~~l 576 (672)
. +..+ +|. ...-+++-++++++.+.+.+
T Consensus 204 ~-~~~~---~~~-~~~~~~~~~~k~~~~l~~~l 231 (267)
T 3mpk_A 204 R-IASA---LDL-PPAEIALATTRGQTELMSIL 231 (267)
T ss_dssp E-EEEE---CSS-CCEEEEEEEETTCHHHHHHH
T ss_pred E-EEec---cCC-CceeEEEEEcCCCHHHHHHH
Confidence 1 1111 111 23567888898887665544
No 354
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.28 E-value=0.079 Score=55.46 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.6
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+..++|+||+|+||||+++.+...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998775
No 355
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.27 E-value=0.12 Score=48.20 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=21.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-|+|+|++|||||||.+.|....
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC
Confidence 3469999999999999999998653
No 356
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.22 E-value=0.11 Score=47.36 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.8
Q ss_pred EEEEeCCCCCChHHHHHHHHhc
Q psy11425 129 IFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~ 150 (672)
-|+|+|++|||||||.+.|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999765
No 357
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.21 E-value=0.12 Score=47.86 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=21.7
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-|+|+|++|||||||.+.|....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4569999999999999999998653
No 358
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.15 E-value=0.12 Score=48.59 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-|+|+|++|||||||.+.|....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3569999999999999999998753
No 359
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.11 E-value=0.11 Score=55.50 Aligned_cols=26 Identities=31% Similarity=0.546 Sum_probs=22.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
+.+.++.|+|+||+||||++..|...
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35779999999999999999888654
No 360
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=91.10 E-value=0.12 Score=50.40 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=18.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHH
Q psy11425 127 GNIFIISAPSGAGKSTLVNELL 148 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~ 148 (672)
+.+++++|++|||||+++..+.
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHH
Confidence 4488999999999999987753
No 361
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.07 E-value=0.1 Score=59.51 Aligned_cols=27 Identities=33% Similarity=0.386 Sum_probs=23.9
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|+||+|||||||.+.|....
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 567899999999999999999997654
No 362
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.05 E-value=0.13 Score=48.65 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=21.7
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-|+|+|++|||||||.+.|....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 4569999999999999999997653
No 363
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.04 E-value=0.11 Score=47.68 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-|+|+|.+|||||||.+.|....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3569999999999999999998753
No 364
>3gxa_A Outer membrane lipoprotein GNA1946; periplasmic, L-methionine bingding, protein binding; 2.25A {Neisseria meningitidis}
Probab=91.03 E-value=6.7 Score=39.98 Aligned_cols=179 Identities=12% Similarity=0.117 Sum_probs=105.0
Q ss_pred HHHHHHhhCCCceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEEeeCCCCCCC----CCCCeEEEEe
Q psy11425 383 VRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLKDIPMN----LPSGFILCAI 458 (672)
Q Consensus 383 v~~~l~~~~p~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aVHSlKD~p~~----~~~gl~i~a~ 458 (672)
++..|++. |+++|++.++. -.+ ...||.+|+||+..-- ..|.- -..|..|.+|
T Consensus 42 ~k~~l~k~--Gi~veiv~F~D---y~~----------------pN~AL~~G~IDaN~fQ--h~pyL~~~nk~~g~~Lv~v 98 (275)
T 3gxa_A 42 IQPELEKK--GYTVKLVEFTD---YVR----------------PNLALAEGELDINVFQ--HKPYLDDFKKEHNLDITEV 98 (275)
T ss_dssp HHHHHHTT--TCEEEEEEESS---SSH----------------HHHHHHHTSCSEEEEE--CHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHc--CCeEEEEEeCC---cHh----------------HHHHHHcCCCCeeecC--CHHHHHHHHHHcCCCEEEE
Confidence 45666664 89999998763 221 3689999999988532 12210 0123444444
Q ss_pred cCCCCCCceEEecCCCCCcCCCCCCeeecC----cHHHHHHHHHh------CC-----------------CCeEEcccCC
Q psy11425 459 LKREDPRDAFISNDYISLSTLPKNAVVGTN----SLRRKVLIKSF------FP-----------------SLIIKSLRGN 511 (672)
Q Consensus 459 ~~R~d~~D~lv~~~~~~~~~lp~~~~iGTs----S~RR~~ql~~~------~p-----------------~~~~~~iRGN 511 (672)
..-....=.|.|++++++++||.|++|+.. ..=|.-.|+.. .+ +|+|+++-..
T Consensus 99 ~~~~~~p~glYS~kiksl~dL~~Ga~IAIPnDptN~~RaL~lL~~aGLIkLk~~~~~~~~T~~DI~eNpk~lk~~eldaa 178 (275)
T 3gxa_A 99 FQVPTAPLGLYPGKLKSLEEVKDGSTVSAPNDPSNFARVLVMLDELGWIKLKDGINPLTASKADIAENLKNIKIVELEAA 178 (275)
T ss_dssp EECCBCCCEEEESSCCCGGGCCTTCEEEEECSHHHHHHHHHHHHHTTSSEECTTCCGGGCCGGGEEECTTCCEEEEECGG
T ss_pred eeccccceEEecCCCCCHHHcCCCCEEEecCCccHHHHHHHHHHHCCCEEecCCCCCCcCCHHHHhcCCCCCEEEEeCHH
Confidence 332223346778889999999999999954 44566666542 12 2566666543
Q ss_pred HHHHHhhhcCCCCCEeeh-----hHhhHhhcCCCCceeeecCCCCCCCCCCCceEEEEEec---CcHHHHHHhhccCChh
Q psy11425 512 IDTRLNKLDKGEYAAIIL-----AAAGLKRLNLQKRIRMLFSPNQILPAPGQGAIAIEILD---NRKELMEMLIPLNHYF 583 (672)
Q Consensus 512 v~tRl~kl~~g~~daiil-----A~Agl~Rl~~~~~~~~~l~~~~~~pa~gQGalave~r~---~d~~~~~~l~~i~~~~ 583 (672)
---| -| +++|+.|+ -.|||. . .+.+.+ +++ .+=+.-|.+|+ +++.+..+++.++.++
T Consensus 179 ql~r--~l--~dvD~avIn~nya~~agl~-~--~dal~E--~~~------~~y~Nvivvr~~d~d~~~ik~lv~a~~S~e 243 (275)
T 3gxa_A 179 QLPR--SR--ADVDFAVVNGNYAISSGMK-L--TEALFQ--EPS------FAYVNWSAVKTADKDSQWLKDVTEAYNSDA 243 (275)
T ss_dssp GHHH--HT--TTSSEEEECHHHHHHTTCC-G--GGCSEE--CCC------CTTCCEEEEEGGGTTCHHHHHHHHHTTSHH
T ss_pred HHhh--hc--cccCEEEEchhHHHHcCCC-c--ccceec--CCC------CCcEEEEEEeccccCCHHHHHHHHHHcCHH
Confidence 2222 23 46888875 345665 2 222221 111 12334456665 5678999999999988
Q ss_pred hHHhHHHHHHHHHHhcCCCCccc
Q psy11425 584 SEQTVKAERAVSRNFNGSCKISL 606 (672)
Q Consensus 584 t~~~~~aER~~l~~l~ggC~~pi 606 (672)
...- +..-=.|.-.|.
T Consensus 244 vk~~-------i~~~y~G~~ip~ 259 (275)
T 3gxa_A 244 FKAY-------AHKRFEGYKSPA 259 (275)
T ss_dssp HHHH-------HHHHSTTCBCCT
T ss_pred HHHH-------HHHHcCCCEEcc
Confidence 7543 332224556664
No 365
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=91.03 E-value=0.43 Score=52.77 Aligned_cols=38 Identities=37% Similarity=0.448 Sum_probs=19.4
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPM 165 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~ 165 (672)
..|+|+|.+|+|||||.+.|......+....+.||+..
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~ 271 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDY 271 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-----------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEE
Confidence 45999999999999999999766322233344555543
No 366
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.01 E-value=0.082 Score=49.16 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=22.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
....-|+|+|++|||||||.+.|...
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 44568999999999999999998643
No 367
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.98 E-value=0.17 Score=46.73 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-|+|+|++|||||||.+.|....
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4569999999999999999997753
No 368
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.97 E-value=0.099 Score=54.64 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=19.6
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy11425 130 FIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 130 IvLtGpsGSGKSTLa~~L~e~ 150 (672)
++|+||+|+||||+++.|...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999873
No 369
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.96 E-value=0.09 Score=55.12 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=23.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+..++|+||+|+||||+++.+.+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999997753
No 370
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.96 E-value=0.1 Score=48.50 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.7
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
+..-|+|+|.+|||||||.+.|...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3457999999999999999999854
No 371
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.95 E-value=0.13 Score=48.31 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=21.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|.+|||||||++.|...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 347999999999999999999865
No 372
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.93 E-value=0.12 Score=54.40 Aligned_cols=26 Identities=23% Similarity=0.209 Sum_probs=22.8
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.+|+|+|++|+||||+++.|...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999754
No 373
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=90.89 E-value=0.14 Score=63.63 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=25.3
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
...+.+++|+||+|||||||++.|...++
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34678999999999999999999987763
No 374
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=90.88 E-value=0.11 Score=55.43 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=21.5
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
-++|+|+|++|||||||.+.|....
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCC
Confidence 3469999999999999999998764
No 375
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=90.86 E-value=0.13 Score=52.60 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
...|+|+|.||||||||.+.|...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 357999999999999999999865
No 376
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.86 E-value=0.15 Score=48.23 Aligned_cols=25 Identities=28% Similarity=0.169 Sum_probs=21.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
...-|+|+|.+|||||||.+.|...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999988765
No 377
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.84 E-value=0.21 Score=46.16 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=21.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|.+|+|||||.+.|...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999999865
No 378
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=90.81 E-value=0.15 Score=54.17 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=22.7
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+..|+|+||||+||||+++.|.+..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999998875
No 379
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.80 E-value=0.13 Score=48.81 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=22.1
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
....-|+|+|++|||||||.+.|...
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999999654
No 380
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.80 E-value=0.12 Score=51.83 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.5
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
+..|.|+|++|+|||++++.+....+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 35688999999999999999988753
No 381
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.78 E-value=0.048 Score=49.82 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=21.2
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+..|.|+|++|+|||++++.+....
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCcEEEECCCCccHHHHHHHHHHhC
Confidence 3458899999999999999987654
No 382
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.77 E-value=0.15 Score=47.38 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|++|||||||.+.|...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999865
No 383
>4ayb_K DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_I 4b1o_K 4b1p_I 2waq_K 2wb1_I 2pmz_K 3hkz_K
Probab=90.77 E-value=0.19 Score=43.00 Aligned_cols=46 Identities=26% Similarity=0.249 Sum_probs=38.8
Q ss_pred cchhHHHHHHHHhhhhhcCCCcccccc--cCCCcchhhhhhhcCcCcc
Q psy11425 325 NRFKLTLCAVYRARQLLKGHTKKIIGC--DNDKVTVIALREISHGKIG 370 (672)
Q Consensus 325 ~~y~l~~~~~~~a~~~~~~~~~~~~~~--~~~k~~~~a~~~~~~~~v~ 370 (672)
.||.-.-.-.-||.||..||+|+++-. .+.-|+.+|.+|+.+|++-
T Consensus 28 TKYEkaRIiG~RA~Qis~GA~~~I~~~~~~~~Dp~~IA~~EL~~~kiP 75 (95)
T 4ayb_K 28 TRYEIARVISARALQLAMGAPALIDINNISSTDVISIAEEEFKRGVLP 75 (95)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCCSSCTTTSCSSCTHHHHHHHHHTTCCC
T ss_pred cHHHHHHHHHHHHHHHHCCCCceEeCCCCCCCCHHHHHHHHHHcCCCC
Confidence 358888888899999999999987643 4567999999999999976
No 384
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.76 E-value=0.12 Score=58.29 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=23.3
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+.+++|+||||+||||+++.+....
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 56799999999999999999998764
No 385
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=90.74 E-value=0.14 Score=52.67 Aligned_cols=39 Identities=28% Similarity=0.184 Sum_probs=23.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeeccccccc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRP 164 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~ 164 (672)
.+..++|+|.||+|||||.+.|...........+.||+.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~ 157 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTS 157 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-----------
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeee
Confidence 456799999999999999999987642112223445543
No 386
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.73 E-value=0.13 Score=48.40 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=22.5
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.....|+|+|.+|||||||.+.|....
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345679999999999999999997653
No 387
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.73 E-value=0.14 Score=48.03 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=22.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..-|+|+|.+|||||||.+.|...++
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 34699999999999999998877653
No 388
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.72 E-value=0.12 Score=54.02 Aligned_cols=27 Identities=41% Similarity=0.634 Sum_probs=24.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
.++-|+|+|+||+||||++..|.+.+.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~g~ 169 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKRGH 169 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhcCC
Confidence 367899999999999999999999863
No 389
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.71 E-value=0.14 Score=47.27 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.8
Q ss_pred eEEEEeCCCCCChHHHHHHHHhc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.-|+|+|++|||||||.+.|...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999765
No 390
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.70 E-value=0.096 Score=48.91 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.4
Q ss_pred EEEEeCCCCCChHHHHHHHHhcC
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
-|+|+|++|||||||.+.|....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 48899999999999999998653
No 391
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.70 E-value=0.17 Score=50.61 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-|+|+|.+|||||||.+.|....
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4579999999999999999998764
No 392
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.66 E-value=0.12 Score=58.15 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=23.7
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+.+++|+||+|||||||.+.|....
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999998765
No 393
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=90.66 E-value=0.093 Score=62.03 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.6
Q ss_pred cccceEEEEeCCCCCChHHHHH
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVN 145 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~ 145 (672)
.+.++++||||+||||||||+.
T Consensus 33 iP~~~l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 33 VPRDALVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp EESSSEEEEESSTTSSHHHHHT
T ss_pred ecCCCEEEEECCCCCCHHHHHH
Confidence 3578899999999999999984
No 394
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=90.62 E-value=0.076 Score=51.35 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=22.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
....|+|+|.+|||||||.+.|....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 35679999999999999999997763
No 395
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.61 E-value=0.11 Score=54.40 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.2
Q ss_pred EEEeCCCCCChHHHHHHHHhcC
Q psy11425 130 FIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 130 IvLtGpsGSGKSTLa~~L~e~~ 151 (672)
++|+||+|+||||+++.+....
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998763
No 396
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.56 E-value=0.16 Score=52.82 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...++|+||+|+|||++++.+....
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3458999999999999999998764
No 397
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.56 E-value=0.14 Score=47.76 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=21.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
...-|+|+|++|||||||.+.|...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999764
No 398
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.56 E-value=0.16 Score=48.07 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=21.5
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|.+|||||||.+.|...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999875
No 399
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.53 E-value=0.11 Score=48.30 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.2
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|++|||||||.+.|...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346999999999999999999765
No 400
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.50 E-value=0.15 Score=47.21 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=21.1
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|++|||||||.+.|...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 346999999999999999999865
No 401
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=90.50 E-value=0.46 Score=52.35 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.2
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
+..|+|+|++|+|||||.+.|...
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 345999999999999999999775
No 402
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=90.49 E-value=0.13 Score=54.55 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=23.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++.|+|+||+|+|||++++.+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998875
No 403
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.49 E-value=0.15 Score=47.87 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=21.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|.+|||||||.+.|...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999765
No 404
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.48 E-value=0.14 Score=56.02 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=23.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..++=|.|.||||+|||++++.++...
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345679999999999999999998874
No 405
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.48 E-value=0.13 Score=58.86 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=23.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+.+++|+||+|||||||.+.|....
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57799999999999999999998764
No 406
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=90.45 E-value=0.14 Score=52.09 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=22.7
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCCCceeeccccccc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRP 164 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~ 164 (672)
..++|+|.||+|||||.+.|...........+.+|+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~ 136 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKG 136 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccc
Confidence 5789999999999999999987643222233455543
No 407
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.44 E-value=0.19 Score=47.79 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.6
Q ss_pred eEEEEeCCCCCChHHHHHHHHhc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..|+|+|.+|+|||||.+.|...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999853
No 408
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.44 E-value=0.17 Score=47.60 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.3
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.-|+|+|++|||||||.+.|....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998753
No 409
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.41 E-value=0.13 Score=54.26 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=22.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.+..++|+||+|+||||+++.+.+.
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999765
No 410
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.41 E-value=0.16 Score=48.25 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=21.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-|+|+|++|||||||.+.|....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4579999999999999999997763
No 411
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.40 E-value=0.14 Score=56.09 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=23.7
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..++=|.|.||||+|||++++.++...
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 346779999999999999999998874
No 412
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.38 E-value=0.14 Score=48.08 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|++|||||||.+.|...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999875
No 413
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=90.35 E-value=0.42 Score=45.95 Aligned_cols=142 Identities=9% Similarity=0.014 Sum_probs=79.6
Q ss_pred HHHHHHcCCccEEEeeCCCCCCCCCCCeEEEEecCCCCCCceEEecC-----CCCCcCCC-CCCeeecCcH-HHHHHHHH
Q psy11425 426 LEMAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISND-----YISLSTLP-KNAVVGTNSL-RRKVLIKS 498 (672)
Q Consensus 426 le~aLl~~~~D~aVHSlKD~p~~~~~gl~i~a~~~R~d~~D~lv~~~-----~~~~~~lp-~~~~iGTsS~-RR~~ql~~ 498 (672)
+-.+|.+|++|+++-++-.-|. ....+.+.. +-- ...-+++.++ ..++++|. +|.+||+..- --...+..
T Consensus 66 ~~~~l~~g~~D~~~~~~~~t~~-r~~~~~fs~-p~~-~~~~~~~~~~~~~~~i~~~~dL~~~g~~v~~~~g~~~~~~l~~ 142 (239)
T 3kbr_A 66 LMRDFADDRFDIAMSGISINLE-RQRQAYFSI-PYL-RDGKTPITLCSEEARFQTLEQIDQPGVTAIVNPGGTNEKFARA 142 (239)
T ss_dssp HHHHHHTTCCSEECSSCBCCHH-HHTTCEECS-CSE-EECEEEEEEGGGGGGGSSHHHHSSTTCEEEECTTSHHHHHHHH
T ss_pred HHHHHHCCCcCEEEeCCcCCHH-HcCccccch-HHh-ccCcEEEEECCcccccCCHHHhcCCCcEEEEcCCCcHHHHHHH
Confidence 4678999999999765432221 111111110 000 1122344432 23566664 3778886322 22446677
Q ss_pred hCCCCeEEcccCCHHHHHhhhcCCCCCEeehhHhhHhhcCC-CCceeeecCCCCCCCCCCCceEEEEEecCcHHHHHHh
Q psy11425 499 FFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNL-QKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 576 (672)
Q Consensus 499 ~~p~~~~~~iRGNv~tRl~kl~~g~~daiilA~Agl~Rl~~-~~~~~~~l~~~~~~pa~gQGalave~r~~d~~~~~~l 576 (672)
.+|+.+++... |...-++.|.+|++||+|.-..-+..+-- .... ..+.+.. .....-+++-+++ ++++.+.+
T Consensus 143 ~~~~~~~~~~~-~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~k-~~~l~~~l 215 (239)
T 3kbr_A 143 NLKKARILVHP-DNVTIFQQIVDGKADLMMTDAIEARLQSRLHPEL-CAVHPQQ---PFDFAEKAYLLPR-DEAFKRYV 215 (239)
T ss_dssp HCSSSEEEECC-CTTTHHHHHHTTSCSEEEEEHHHHHHHHHHCTTE-EECCCC----CCCCEEECCEECS-CHHHHHHH
T ss_pred hCCCCceEEeC-CHHHHHHHHHcCCcCEEEEchHHHHHHHHhCCCc-EEecCCC---CccccceEEEEcC-CHHHHHHH
Confidence 78999998765 77888999999999999986654433211 1111 1222111 1235567777888 77655554
No 414
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.32 E-value=0.16 Score=52.59 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.8
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+.+|+|+|++|+||||++..|....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999987653
No 415
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.32 E-value=0.13 Score=58.64 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.8
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.+++|+||+|||||||.+.|....
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 579999999999999999998765
No 416
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.31 E-value=0.12 Score=56.10 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHH
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELL 148 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~ 148 (672)
.+.+++|+||||||||||+..|.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHH
Confidence 57799999999999999999775
No 417
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.29 E-value=0.14 Score=48.04 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=21.7
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-|+|+|++|||||||.+.|....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3469999999999999999998653
No 418
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.25 E-value=0.15 Score=53.00 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
+..++|+||+|+|||+|+..+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999988754
No 419
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.19 E-value=0.13 Score=54.63 Aligned_cols=27 Identities=37% Similarity=0.410 Sum_probs=24.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..+.+++|.||+|+|||||.+.|....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 567899999999999999999998875
No 420
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.18 E-value=0.16 Score=49.58 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.1
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
....|+|+|.+|||||||.+.|...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999765
No 421
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.18 E-value=0.17 Score=48.13 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=22.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...-|+|+|++|||||||.+.|....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34679999999999999999997653
No 422
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.13 E-value=0.11 Score=53.38 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+..++|+||+|+||||+++.+....
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999997753
No 423
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.11 E-value=0.15 Score=48.46 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=21.2
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.-|+|+|++|||||||.+.|....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999997653
No 424
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.11 E-value=0.14 Score=56.09 Aligned_cols=30 Identities=27% Similarity=0.238 Sum_probs=25.6
Q ss_pred cccccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 122 SFKSFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 122 ~~~~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.....+.+++|.||+|||||||.+.|....
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 334567899999999999999999998875
No 425
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.09 E-value=0.14 Score=48.64 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
...|+|+|++|||||||.+.|...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999865
No 426
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.07 E-value=0.16 Score=54.13 Aligned_cols=71 Identities=20% Similarity=0.062 Sum_probs=43.7
Q ss_pred CCeEEEEeeHHH-----HHHHHHhCCC---cEEEEEeCCCHHHHHHHHHHcC---CC--CHHHHHHHHHHH-----HHHh
Q psy11425 217 NVDILLEIDFQG-----AKQIKKKFPN---AIGIFILPPSLDSLKERLYKRG---QD--KYDVISRRILSA-----NKEI 278 (672)
Q Consensus 217 G~~vIldi~~~g-----~~~l~~~~~~---~~vIfI~~ps~e~l~~RL~~Rg---~~--~~e~i~~rl~~~-----~~e~ 278 (672)
.+++|+++.+-. +..+...+.+ ..+|||++| ++++++|+.+|. .. +.+++..|+... ..-.
T Consensus 260 ~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad-~ev~~~Rli~R~~~~Gl~~s~eea~~r~~~~d~pN~~~I~ 338 (359)
T 2ga8_A 260 TRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDID-YEATEERVAKRHLQSGLVTTIAEGREKFRSNDLLNGRDID 338 (359)
T ss_dssp CCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECC-HHHHHHHHHHHHHHTTSCSSHHHHHHHHHHCTTTSSHHHH
T ss_pred CCEEEEEeehhhccccchhhhhhccccccceEEEEEECC-HHHHHHHHHHhhhccCCCCCHHHHHHHHHhcCchhhHhHh
Confidence 467888884432 3334433311 167999987 999999999882 33 677777777652 1112
Q ss_pred hhcCCCcEEE
Q psy11425 279 SYANKFDYII 288 (672)
Q Consensus 279 ~~~~~~D~VI 288 (672)
.....+|.|+
T Consensus 339 ~~~~~ad~i~ 348 (359)
T 2ga8_A 339 NHLIKVDNIV 348 (359)
T ss_dssp HTBCCCTTEE
T ss_pred hcCCCCCEEE
Confidence 3445677654
No 427
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=90.06 E-value=0.13 Score=56.09 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=20.4
Q ss_pred EEEEeCCCCCChHHHHHHHHhcC
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
-|+|+|++|||||||++.|....
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999998653
No 428
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.05 E-value=0.1 Score=54.10 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=19.5
Q ss_pred eEEEEeCCCCCChHHHHHHHHhc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.-|+|+|++|||||||.+.|...
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 45799999999999999998643
No 429
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.04 E-value=0.16 Score=55.66 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.+.+|+++|++||||||++..|...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999998888754
No 430
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.03 E-value=0.14 Score=48.71 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=22.4
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...-|+|+|.+|||||||.+.|....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34579999999999999999998764
No 431
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.01 E-value=0.18 Score=55.32 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.0
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
+-|+|+||||+||||+++.|.....
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3488999999999999999988763
No 432
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.98 E-value=0.16 Score=55.69 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=23.6
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..++=|.|.||||+|||++++.++...
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 346779999999999999999998874
No 433
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=89.93 E-value=0.16 Score=47.01 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|.+|||||||.+.|...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999875
No 434
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=89.89 E-value=0.11 Score=56.75 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=22.4
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPM 165 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~ 165 (672)
..|+|+|.||+|||||.+.|...........+.+||..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~ 41 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDR 41 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------C
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccce
Confidence 57999999999999999999765322222334455443
No 435
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=89.88 E-value=0.18 Score=52.49 Aligned_cols=103 Identities=13% Similarity=0.078 Sum_probs=63.8
Q ss_pred HHHHHHHcCCccEEEeeCCCCCC--CCCCCeEEEEecCCCCCCceEEecC---CCCCcCCCCCCeeecCc---HH-HHH-
Q psy11425 425 ELEMAIIKGKADLAVHSLKDIPM--NLPSGFILCAILKREDPRDAFISND---YISLSTLPKNAVVGTNS---LR-RKV- 494 (672)
Q Consensus 425 ele~aLl~~~~D~aVHSlKD~p~--~~~~gl~i~a~~~R~d~~D~lv~~~---~~~~~~lp~~~~iGTsS---~R-R~~- 494 (672)
++-++|.+|++|+++-++--.-. .....+.+.+.... ...++|+++ .++++||+.|.+||+++ .. ...
T Consensus 94 ~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~~ivv~~~s~I~s~~DL~kGk~i~v~~~~s~~~~~~~ 171 (341)
T 3un6_A 94 DLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHH--EGNVIMGQKGMHLNEFNNNGDDYHFGIPHRYSTHYLLLE 171 (341)
T ss_dssp HHHHHHHTTSSSEEEEEHHHHHHHHHTTCCCEEEEESCE--ECEEEEESTTCCGGGCCSSSSCEEEEESCSSSHHHHHHH
T ss_pred HHHHHHHcCCCCEEecchHHHHHHHHCCCCeEEEeecCC--CceEEEEcCCCCCCCHHHhCCCCEEEECCCCCHHHHHHH
Confidence 56789999999999876511000 01123455555432 244566654 35789999999998642 22 221
Q ss_pred -HHHHhC--C-CCeEEcccCCHHHHHhhhcCCCCCEeehhH
Q psy11425 495 -LIKSFF--P-SLIIKSLRGNIDTRLNKLDKGEYAAIILAA 531 (672)
Q Consensus 495 -ql~~~~--p-~~~~~~iRGNv~tRl~kl~~g~~daiilA~ 531 (672)
.|+..- | |++++.+ +....+.-|.+|+.||+++..
T Consensus 172 ~~l~~~Gl~~~dv~~~~~--~~~~~~~al~~G~vDa~~~~~ 210 (341)
T 3un6_A 172 ELRKQLKIKPGHFSYHEM--SPAEMPAALSEHRITGYSVAE 210 (341)
T ss_dssp HHHHHTTCCTTSEEEEEC--CGGGHHHHHHTTSCSEEEEET
T ss_pred HHHHHcCCCHHHeEEEEc--ChHHHHHHHHcCCCCEEEecC
Confidence 233321 2 5677777 356778899999999998843
No 436
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.87 E-value=0.18 Score=47.40 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.2
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|.+|||||||.+.|...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 346999999999999999999865
No 437
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=89.86 E-value=1.6 Score=41.33 Aligned_cols=146 Identities=10% Similarity=0.090 Sum_probs=80.6
Q ss_pred HHHHHHcCCccEEEeeCCCCCCCCCCCeEEEEecCCCCCCceEEecCC--CCCcCCCCCCeeecCcHHH-HHHHHHhCCC
Q psy11425 426 LEMAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDY--ISLSTLPKNAVVGTNSLRR-KVLIKSFFPS 502 (672)
Q Consensus 426 le~aLl~~~~D~aVHSlKD~p~~~~~gl~i~a~~~R~d~~D~lv~~~~--~~~~~lp~~~~iGTsS~RR-~~ql~~~~p~ 502 (672)
+-.+|.+|++|+++.++-.-| +..+.+.+.. +--.....+++++++ .++++| .|.+||+..--- ...+...+|+
T Consensus 57 ~~~~l~~g~~D~~~~~~~~~~-~r~~~~~~s~-p~~~~~~~~~~~~~~~~~~~~dL-~g~~v~~~~g~~~~~~l~~~~~~ 133 (229)
T 2y7i_A 57 LIPSLRFKKFDAVIAGMDMTP-KREQQVSFSQ-PYYEGLSAVVVTRKGAYHTFADL-KGKKVGLENGTTHQRYLQDKQQA 133 (229)
T ss_dssp HHHHHHTTSCSEECSSCBCCH-HHHTTSEECS-CSBCCCCEEEEEETTSCCSTGGG-TTCEEEEETTSHHHHHHHHHCTT
T ss_pred HHHHHhCCCceEEEecCccCH-HHhcceeecc-ccccCCcEEEEEeCCCCCCHHHH-CCCEEEEecCCcHHHHHHHhCCC
Confidence 467899999999985432111 1112222221 111111345555543 467777 588888643222 3456667899
Q ss_pred CeEEcccCCHHHHHhhhcCCCCCEeehhHhhHhhcC-CCCceeeecCCCCCCCCCCCceEEEEEecCcHHHHHHh
Q psy11425 503 LIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLN-LQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 576 (672)
Q Consensus 503 ~~~~~iRGNv~tRl~kl~~g~~daiilA~Agl~Rl~-~~~~~~~~l~~~~~~pa~gQGalave~r~~d~~~~~~l 576 (672)
++++... |.+.-++.|..|++||++....-+..+- -...+ ..+.+...-|..-..-+++-++++++++.+.+
T Consensus 134 ~~~~~~~-~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 206 (229)
T 2y7i_A 134 ITPVAYD-SYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDY-AIMDERASDPDYYGKGLGIAVRKDNDALLQEI 206 (229)
T ss_dssp SEEEEES-CHHHHHHHHHTTSCSEEEEEHHHHHHHHTTCTTE-EECSCCBCCTTTSCCCBCCEECTTCHHHHHHH
T ss_pred CeEEecC-CHHHHHHHHHcCCcCEEEechHHHHHHHHhCCCe-EEeccccccccccccceEEEEeCCCHHHHHHH
Confidence 9888764 7899999999999999998665544321 11122 23322111111111235566777776554443
No 438
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.81 E-value=0.13 Score=57.50 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.8
Q ss_pred ccceEEEEeCCCCCChHHHHHHH
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNEL 147 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L 147 (672)
..+.+++|+||+|||||||++.+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Confidence 46789999999999999999984
No 439
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.81 E-value=0.18 Score=48.44 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...|+|+|.+|||||||.+.|....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998753
No 440
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=89.81 E-value=0.1 Score=62.19 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.2
Q ss_pred cccceEEEEeCCCCCChHHHH
Q psy11425 124 KSFGNIFIISAPSGAGKSTLV 144 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa 144 (672)
.+..+++||||+||||||||+
T Consensus 21 ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 21 IPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp EETTSEEEEEESTTSSSHHHH
T ss_pred cCCCcEEEEECCCCCcHHHHH
Confidence 357899999999999999998
No 441
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.80 E-value=0.14 Score=48.93 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.7
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
...|+|+|++|||||||.+.|...
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999654
No 442
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.80 E-value=0.23 Score=58.53 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=24.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+..|+|+||||+||||+++.|....+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999988754
No 443
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.79 E-value=0.16 Score=47.81 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.3
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.-|+|+|++|||||||.+.|....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 469999999999999999998753
No 444
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.78 E-value=0.2 Score=49.85 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.+..+++++|..||||||++..|...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999743
No 445
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=89.77 E-value=0.19 Score=47.32 Aligned_cols=24 Identities=38% Similarity=0.426 Sum_probs=21.2
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|.+|||||||.+.|...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 347999999999999999999765
No 446
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.74 E-value=0.17 Score=47.38 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-|+|+|++|||||||.+.|....
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3579999999999999999997653
No 447
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=89.74 E-value=0.094 Score=60.49 Aligned_cols=23 Identities=48% Similarity=0.784 Sum_probs=20.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHH
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNEL 147 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L 147 (672)
..+.+++|+||||||||||.+.+
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHHTTT
T ss_pred cCCCEEEEEeeCCCCHHHHHHHH
Confidence 35789999999999999999754
No 448
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.70 E-value=0.15 Score=52.91 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=19.7
Q ss_pred EEEeCCCCCChHHHHHHHHhc
Q psy11425 130 FIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 130 IvLtGpsGSGKSTLa~~L~e~ 150 (672)
++|+||+|+||||+++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999776
No 449
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.69 E-value=0.16 Score=56.70 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=23.2
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++.++|+||+|+||||+++.+.+..
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998875
No 450
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=89.68 E-value=0.18 Score=51.41 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.2
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...|+|+|.+|||||||.+.|....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998764
No 451
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.68 E-value=0.17 Score=48.57 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-|+|+|.+|||||||.+.|....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3479999999999999999998753
No 452
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.65 E-value=0.16 Score=47.95 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-|+|+|++|||||||.+.|....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3469999999999999999997653
No 453
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=89.64 E-value=0.17 Score=52.95 Aligned_cols=27 Identities=37% Similarity=0.629 Sum_probs=24.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
.++-|.|+|+||+||||++-.|.+.+.
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~G~ 172 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINKNH 172 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHcCC
Confidence 467799999999999999999998863
No 454
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=89.61 E-value=0.12 Score=59.15 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChHHHHHHHHhcC
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.|+|+|++|||||||.+.|....
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998764
No 455
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=89.60 E-value=0.73 Score=44.53 Aligned_cols=154 Identities=11% Similarity=0.081 Sum_probs=83.3
Q ss_pred CCCceEEEEeeccCCccccCCcccccCcccccHHHHHHHHHcCCccEEEeeCCCCCCCCCCCeEEEEecCCCCCCceEEe
Q psy11425 391 YPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFIS 470 (672)
Q Consensus 391 ~p~~~~e~~~i~t~GD~~~~~~l~~~g~kg~F~kele~aLl~~~~D~aVHSlKD~p~~~~~gl~i~a~~~R~d~~D~lv~ 470 (672)
.|+++++++.... . ++-++|.+|++|+++-++-.-| +..+.+.+.. +--. ..-+++.
T Consensus 78 ~pg~~v~~~~~~~-~-------------------~~~~~l~~g~~D~~~~~~~~~~-~~~~~~~~~~-p~~~-~~~~~~~ 134 (259)
T 2v25_A 78 GDDKKIKLVAVNA-K-------------------TRGPLLDNGSVDAVIATFTITP-ERKRIYNFSE-PYYQ-DAIGLLV 134 (259)
T ss_dssp SCTTSEEEEECCT-T-------------------THHHHHHTTSCSEECSSCBCCH-HHHTTEEECS-CSEE-EEEEEEE
T ss_pred CCCcceEEEEcCH-H-------------------HHHHHHhCCCCCEEEecCccCH-HHHhcCcccc-ccee-CceEEEE
Confidence 4899999887532 1 1367899999999986542111 1222333221 1011 1224444
Q ss_pred cC---CCCCcCCCCCCeeecC---cHHHH-HH-HHHhCCCCeEEcccCCHHHHHhhhcCCCCCEeehhHhhHhhcCCCCc
Q psy11425 471 ND---YISLSTLPKNAVVGTN---SLRRK-VL-IKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKR 542 (672)
Q Consensus 471 ~~---~~~~~~lp~~~~iGTs---S~RR~-~q-l~~~~p~~~~~~iRGNv~tRl~kl~~g~~daiilA~Agl~Rl~~~~~ 542 (672)
+. ..++++| .|.+||+. +.+.. .+ +....-+.+++.. .|..+-+..|.+|++|+++.....+..+--...
T Consensus 135 ~~~~~i~~~~dL-~g~~i~~~~g~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~ 212 (259)
T 2v25_A 135 LKEKKYKSLADM-KGANIGVAQAATTKKAIGEAAKKIGIDVKFSEF-PDYPSIKAALDAKRVDAFSVDKSILLGYVDDKS 212 (259)
T ss_dssp EGGGCCCSGGGC-TTCEEEEETTCSHHHHHHHHHHHTTCCCEEEEE-SSHHHHHHHHHTTSSSEEEEEHHHHTTTCCTTE
T ss_pred eCCCCCCCHHHh-CCCEEEEecCCchHHHHHHHHHhcCCceeEEEe-CCHHHHHHHHHcCCCcEEEecHHHHHHHHHhCC
Confidence 43 2467777 46667652 22221 11 1122223356544 588999999999999999997665554422211
Q ss_pred eeeecCCCCCCCCCCCceEEEEEecCcHHHHHHh
Q psy11425 543 IRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 576 (672)
Q Consensus 543 ~~~~l~~~~~~pa~gQGalave~r~~d~~~~~~l 576 (672)
..+. +.....-+++-++++++++.+.+
T Consensus 213 --~~~~-----~~~~~~~~~~~~~k~~~~l~~~~ 239 (259)
T 2v25_A 213 --EILP-----DSFEPQSYGIVTKKDDPAFAKYV 239 (259)
T ss_dssp --EECS-----CCCSEEEECCEEETTCHHHHHHH
T ss_pred --Cccc-----cccccceeEEEEcCCCHHHHHHH
Confidence 1111 11223456777888875554444
No 456
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=89.59 E-value=0.15 Score=47.64 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-|+|+|.+|||||||.+.|....
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998653
No 457
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.57 E-value=0.15 Score=54.25 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.9
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
+.+.++.|.||||||||||+..+...
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999988754
No 458
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=89.56 E-value=0.19 Score=53.52 Aligned_cols=21 Identities=38% Similarity=0.727 Sum_probs=19.1
Q ss_pred eEEEEeCCCCCChHHHHHHHH
Q psy11425 128 NIFIISAPSGAGKSTLVNELL 148 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~ 148 (672)
.+.+|+||+|||||||.+.+.
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 488899999999999999875
No 459
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=89.54 E-value=0.29 Score=60.75 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=24.8
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
..+.+++|+||+|||||||++.|...++
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4678999999999999999999987753
No 460
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=89.53 E-value=0.23 Score=51.46 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-|+|+|.+|||||||.+.|....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4569999999999999999987764
No 461
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=89.52 E-value=0.12 Score=61.99 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=19.0
Q ss_pred ccceEEEEeCCCCCChHHHHH
Q psy11425 125 SFGNIFIISAPSGAGKSTLVN 145 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~ 145 (672)
+..+++||||+||||||||+.
T Consensus 44 P~~~lvv~tG~SGSGKSSLaf 64 (993)
T 2ygr_A 44 PRDALIVFTGLSGSGKSSLAF 64 (993)
T ss_dssp ESSSEEEEEESTTSSHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 567899999999999999984
No 462
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=89.50 E-value=0.21 Score=48.48 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=20.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHHh
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLK 149 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e 149 (672)
.+.+.+|+||.|||||||...+.-
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999998853
No 463
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=89.49 E-value=0.15 Score=55.95 Aligned_cols=40 Identities=30% Similarity=0.345 Sum_probs=24.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPM 165 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~ 165 (672)
...-|+|+|.+|+|||||.+.|......+....+.||+..
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~ 233 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA 233 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CT
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEE
Confidence 3567999999999999999999865322222334455443
No 464
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.48 E-value=0.18 Score=52.87 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
+..++|+||+|+||||+++.+.+..
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999997753
No 465
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=89.48 E-value=0.16 Score=53.76 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
++-|+|+||||+|||++++.+....
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4568899999999999999998764
No 466
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=89.47 E-value=0.15 Score=55.13 Aligned_cols=40 Identities=20% Similarity=0.052 Sum_probs=23.3
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcCCCceeecccccccC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPM 165 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~~~~~~~v~~TTR~~ 165 (672)
.++..|+|+|+||+|||||.+.|..... .....+.||..|
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p 59 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDP 59 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------CC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCc
Confidence 4566799999999999999999986532 111234455544
No 467
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=89.45 E-value=2.9 Score=40.48 Aligned_cols=145 Identities=18% Similarity=0.250 Sum_probs=78.9
Q ss_pred HHHHHHHHcCCccEEEeeCCCCCCCCCCCeEEEEecCCCCCCceEEecC-----CCCCcCCCCCCeeecCcHHH-HHHHH
Q psy11425 424 KELEMAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISND-----YISLSTLPKNAVVGTNSLRR-KVLIK 497 (672)
Q Consensus 424 kele~aLl~~~~D~aVHSlKD~p~~~~~gl~i~a~~~R~d~~D~lv~~~-----~~~~~~lp~~~~iGTsS~RR-~~ql~ 497 (672)
.++-++|.+|++|+++-++-.-|. ....+.+.. +=-....+++.++ ..++++| .|-+||+..--- ...+.
T Consensus 91 ~~~~~~l~~g~~D~~~~~~~~~~~-r~~~~~~s~--p~~~~~~~~~~~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~l~ 166 (269)
T 4i62_A 91 DNVLASVQSGKADLAISGVSKTDE-RSKVFDFST--PYYTAKNKLIVKKSDLATYQSVNDL-AQKKVGAQKGSIQETMAK 166 (269)
T ss_dssp HHHHHHHHTTSCSEECSSCBCCHH-HHTTEEECS--CCEECCEEEEEEGGGTTTCSSGGGG-C-CEEEEETTSHHHHHHH
T ss_pred HHHHHHHhCCCccEEecCCcCCHh-Hhhceeccc--chhhcceEEEEECCccccccCHHHh-CCCeEEEecCchHHHHHH
Confidence 346789999999998754322221 112222111 1111223444433 2457777 477777643222 34567
Q ss_pred HhCCCCeEEcccCCHHHHHhhhcCCCCCEeehhHhhHhhcCC-CCceeeecCCCCCCCCCCCceEEEEEecCcHHHHHHh
Q psy11425 498 SFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNL-QKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 576 (672)
Q Consensus 498 ~~~p~~~~~~iRGNv~tRl~kl~~g~~daiilA~Agl~Rl~~-~~~~~~~l~~~~~~pa~gQGalave~r~~d~~~~~~l 576 (672)
...|+.+++... +.+.-++.|.+|++||++....-+..+-- .... ..... .+ +....--+++-++++++++.+.+
T Consensus 167 ~~~~~~~~~~~~-~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~-~~~~~-~~-~~~~~~~~~~~~~~~~~~l~~~l 242 (269)
T 4i62_A 167 DLLQNSSLVSLP-KNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDL-AIADL-NF-EKEQDDSYAVAMKKDSKELKEAV 242 (269)
T ss_dssp HHCTTSEEEEES-CHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTE-EECSC-CC-CC-CCCEECCEEESSCHHHHHHH
T ss_pred HhCCCCcEEecC-CHHHHHHHHHcCCCCEEEeChHHHHHHHHhCCCC-eEEee-cc-CCCcccceEEEEeCCCHHHHHHH
Confidence 778999988765 78999999999999999976554432211 1111 11111 11 11122345677788776544433
No 468
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=89.43 E-value=0.2 Score=49.83 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=21.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..+.+++++|++|+||||++-.+...
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHH
Confidence 45789999999999999988766544
No 469
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=89.43 E-value=0.12 Score=61.74 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.0
Q ss_pred ccceEEEEeCCCCCChHHHHH
Q psy11425 125 SFGNIFIISAPSGAGKSTLVN 145 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~ 145 (672)
+..+++||||+||||||||+.
T Consensus 42 P~~~lvv~tG~SGSGKSSLaf 62 (972)
T 2r6f_A 42 PRGKLVVLTGLSGSGKSSLAF 62 (972)
T ss_dssp ETTSEEEEEESTTSSHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 567899999999999999984
No 470
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=89.42 E-value=0.24 Score=54.22 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=23.0
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++-|.|+||||+|||++++.+....
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999998875
No 471
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.42 E-value=0.19 Score=49.25 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=21.2
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHh
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLK 149 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e 149 (672)
+.+.+++|+|+||+|||+++-.++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3567999999999999999987643
No 472
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.40 E-value=0.19 Score=47.47 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=21.9
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-|+|+|.+|+|||||.+.|....
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998763
No 473
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.40 E-value=0.16 Score=48.46 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHHh
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLK 149 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e 149 (672)
...|+|+|.+|||||||.+.|..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999864
No 474
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.39 E-value=0.26 Score=54.99 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=20.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.+++|+|+|++||||||++..|...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999743
No 475
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.37 E-value=0.2 Score=47.21 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.3
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|.+|||||||.+.|...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 356999999999999999999864
No 476
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=89.35 E-value=0.2 Score=50.57 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.8
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...|+|+|.+|||||||.+.|....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC
Confidence 4579999999999999999998653
No 477
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.33 E-value=0.16 Score=47.97 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=21.7
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-|+|+|++|||||||.+.|....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3469999999999999999998754
No 478
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=89.32 E-value=0.17 Score=48.29 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=20.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|++|||||||.+.|...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356999999999999999999754
No 479
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=89.30 E-value=0.23 Score=52.58 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=21.1
Q ss_pred eEEEEeCCCCCChHHHHHHHHhc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
+.|+|+|.+|||||||.+.|...
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37999999999999999999875
No 480
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.30 E-value=0.16 Score=48.43 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.6
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..-|+|+|++|||||||.+.|....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3569999999999999999997653
No 481
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.27 E-value=0.17 Score=47.83 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=19.9
Q ss_pred eEEEEeCCCCCChHHHHHHHHhc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.-|+|+|.+|||||||.+.|...
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999754
No 482
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.25 E-value=0.22 Score=48.22 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=21.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
...-|+|+|.+|||||||.+.|...
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3457999999999999999999775
No 483
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=89.20 E-value=0.22 Score=55.08 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=21.7
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
++-|+|+||||+||||+++.+....
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4558999999999999999998763
No 484
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.18 E-value=0.2 Score=46.97 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.4
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
....-|+|+|.+|||||||.+.|...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999854
No 485
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=89.17 E-value=0.16 Score=55.57 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
+..++|+||+|+||||+++.+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999999998765
No 486
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.14 E-value=0.19 Score=52.80 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.5
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.+.++.|+||||+|||||+..+...
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3567899999999999999998764
No 487
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.13 E-value=0.22 Score=52.49 Aligned_cols=26 Identities=19% Similarity=0.031 Sum_probs=23.0
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
+.+.++.|+|+|||||||++..+...
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998764
No 488
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.12 E-value=0.17 Score=54.85 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.9
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
.++=|.|.||||+|||.+++.++...
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 45669999999999999999998874
No 489
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=89.11 E-value=0.035 Score=55.44 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.0
Q ss_pred eEEEEeCCCCCChHHHHHHHHhc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.+++|+||+|||||||.+.|.-.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36789999999999999998665
No 490
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=89.11 E-value=0.13 Score=47.93 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=10.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|++|||||||.+.|...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999754
No 491
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=89.10 E-value=1.2 Score=41.78 Aligned_cols=139 Identities=13% Similarity=0.075 Sum_probs=78.2
Q ss_pred HHHHHHcCCccEEEeeCCCCCCCCCCCeEEEEecCCCCCCceEEecC----CCCCcCCCCCCeeecCcHHH-HHHHHHhC
Q psy11425 426 LEMAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISND----YISLSTLPKNAVVGTNSLRR-KVLIKSFF 500 (672)
Q Consensus 426 le~aLl~~~~D~aVHSlKD~p~~~~~gl~i~a~~~R~d~~D~lv~~~----~~~~~~lp~~~~iGTsS~RR-~~ql~~~~ 500 (672)
+..+|.+|++|+++.++-.-|. ....+.+.. +=-...-++++++ ..++++| .|.+||+..--- ...+...+
T Consensus 53 ~~~~l~~g~~D~~~~~~~~~~~-r~~~~~~~~--p~~~~~~~~~~~~~~~~i~~~~dL-~g~~i~~~~g~~~~~~l~~~~ 128 (226)
T 1wdn_A 53 IIPALQTKNVDLALAGITITDE-RKKAIDFSD--GYYKSGLLVMVKANNNDVKSVKDL-DGKVVAVKSGTGSVDYAKANI 128 (226)
T ss_dssp HHHHHHTTSSSEEEEEEECCHH-HHTTSEECS--CCEEEEEEEEEETTCCSCSSSTTT-TTCEEEEETTSHHHHHHHHHC
T ss_pred HHHHHhCCCCCEEEEcCcCCHH-HhCcccccc--chhcCceEEEEeCCCCCCCCHHHh-CCCEEEEEcCCcHHHHHHHhC
Confidence 5678999999999865432221 111222110 0001122344432 2357777 577787532211 33566667
Q ss_pred CCCeEEcccCCHHHHHhhhcCCCCCEeehhHhhHhh----cCCCCceeeecCCCCCCCCCCCceEEEEEecCcHHHHHHh
Q psy11425 501 PSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKR----LNLQKRIRMLFSPNQILPAPGQGAIAIEILDNRKELMEML 576 (672)
Q Consensus 501 p~~~~~~iRGNv~tRl~kl~~g~~daiilA~Agl~R----l~~~~~~~~~l~~~~~~pa~gQGalave~r~~d~~~~~~l 576 (672)
|+.+++... |.++-++.|.+|.+||++....-+.. .+. ..+ ..+++ .....-+++-++++++++.+.+
T Consensus 129 ~~~~~~~~~-~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~-~~l-~~~~~-----~~~~~~~~~~~~k~~~~l~~~~ 200 (226)
T 1wdn_A 129 KTKDLRQFP-NIDNAYMELGTNRADAVLHDTPNILYFIKTAGN-GQF-KAVGD-----SLEAQQYGIAFPKGSDELRDKV 200 (226)
T ss_dssp CCSEEEEES-SHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTT-TTE-EEEEE-----EEEEEEEEEEECTTCHHHHHHH
T ss_pred CCceEEEeC-CHHHHHHHHHcCCcCEEEeCcHHHHHHHHhCCC-Cce-EEecC-----CcccCceEEEEeCCCHHHHHHH
Confidence 888887654 78899999999999999986554433 332 122 11211 1123457888888876544443
No 492
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.03 E-value=0.18 Score=60.42 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=23.2
Q ss_pred cccceEEEEeCCCCCChHHHHHHHHh
Q psy11425 124 KSFGNIFIISAPSGAGKSTLVNELLK 149 (672)
Q Consensus 124 ~~~~kiIvLtGpsGSGKSTLa~~L~e 149 (672)
...+.+++|+||+|||||||++.|..
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34678999999999999999999984
No 493
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.01 E-value=0.24 Score=47.24 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.4
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
..-|+|+|++|||||||.+.|...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999865
No 494
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=89.00 E-value=0.24 Score=54.32 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.9
Q ss_pred eEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..++|+||||+||||+++.+....
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Confidence 469999999999999999998875
No 495
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=88.99 E-value=0.23 Score=47.05 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=20.7
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhc
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
...-|+|+|.+|||||||.+.|...
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999754
No 496
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=88.97 E-value=0.14 Score=53.24 Aligned_cols=24 Identities=29% Similarity=0.248 Sum_probs=21.4
Q ss_pred EEEEeCCCCCChHHHHHHHHhcCC
Q psy11425 129 IFIISAPSGAGKSTLVNELLKKDH 152 (672)
Q Consensus 129 iIvLtGpsGSGKSTLa~~L~e~~~ 152 (672)
.+.|+||+|+|||++++.+....+
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 399999999999999999988754
No 497
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=88.95 E-value=0.27 Score=49.71 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=22.0
Q ss_pred ceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 127 GNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 127 ~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
...|+|+|.+|+|||||.+.|....
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998653
No 498
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=88.91 E-value=0.27 Score=49.49 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.6
Q ss_pred cceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 126 FGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 126 ~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
....|+|+|.+|+|||||.+.|....
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34679999999999999999998764
No 499
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.91 E-value=0.17 Score=48.68 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.8
Q ss_pred eEEEEeCCCCCChHHHHHHHHhc
Q psy11425 128 NIFIISAPSGAGKSTLVNELLKK 150 (672)
Q Consensus 128 kiIvLtGpsGSGKSTLa~~L~e~ 150 (672)
.-|+|+|.+|||||||.+.|...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999765
No 500
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.88 E-value=0.2 Score=55.16 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=23.8
Q ss_pred ccceEEEEeCCCCCChHHHHHHHHhcC
Q psy11425 125 SFGNIFIISAPSGAGKSTLVNELLKKD 151 (672)
Q Consensus 125 ~~~kiIvLtGpsGSGKSTLa~~L~e~~ 151 (672)
..++=|.|.||||+|||++++.++...
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 456779999999999999999998874
Done!