RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11425
(672 letters)
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear
tetrapyrrole, all alpha/beta; HET: DPM; 1.66A
{Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A*
2ypn_A* 1ypn_A* 1pda_A*
Length = 313
Score = 408 bits (1051), Expect = e-139
Identities = 138/295 (46%), Positives = 191/295 (64%), Gaps = 5/295 (1%)
Query: 374 RLAIWQAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPL-KINEKGLFTKELEMAIIK 432
LA+WQA YV+ K++ +P VE++ + T+GD I + PL K+ KGLF KELE+A+++
Sbjct: 14 PLALWQAHYVKDKLMASHPGLVVELVPMVTRGDVILD-TPLAKVGGKGLFVKELEVALLE 72
Query: 433 GKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRR 492
+AD+AVHS+KD+P+ P G L I +REDPRDAF+SN+Y SL LP ++VGT+SLRR
Sbjct: 73 NRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRR 132
Query: 493 KVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQI 552
+ + P LII+SLRGN+ TRL+KLD GEY AIILA AGLKRL L+ RIR P
Sbjct: 133 QCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEIS 192
Query: 553 LPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAAFAMV 612
LPA GQGA+ IE + E+L LNH+ + V AERA++ G C++ + ++A +
Sbjct: 193 LPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEGGCQVPIGSYAEL 252
Query: 613 NNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAIEIIK 667
+ EI LRA++ P+G +II E G E +G+ AE L GA EI+
Sbjct: 253 ID---GEIWLRALVGAPDGSQIIRGERRGAPQDAEQMGISLAEELLNNGAREILA 304
>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen
hinge, alternative splicing, cytoplasm, disease
mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo
sapiens} PDB: 3eq1_A*
Length = 364
Score = 378 bits (973), Expect = e-126
Identities = 113/328 (34%), Positives = 174/328 (53%), Gaps = 38/328 (11%)
Query: 374 RLAIWQAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPL-KINEKGLFTKELEMAIIK 432
+LA Q + V + YP + EI+ ++T GDKI + L KI EK LFTKELE A+ K
Sbjct: 32 QLARIQTDSVVATLKASYPGLQFEIIAMSTTGDKILD-TALSKIGEKSLFTKELEHALEK 90
Query: 433 GKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISND---YISLSTLPKNAVVGTNS 489
+ DL VHSLKD+P LP GF + AI KRE+P DA + + +L TLP+ +VVGT+S
Sbjct: 91 NEVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEKSVVGTSS 150
Query: 490 LRRKVLIKSFFPSLIIKSLRGNIDTRLNKLD-KGEYAAIILAAAGLKRLNLQKRIRMLFS 548
LRR ++ FP L +S+RGN++TRL KLD + E++AIILA AGL+R+ R+ +
Sbjct: 151 LRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQQEFSAIILATAGLQRMGWHNRVGQILH 210
Query: 549 PNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAA 608
P + + A GQGA+ +E+ +++++++ L+ + AERA R+ G C + +A
Sbjct: 211 PEECMYAVGQGALGVEVRAKDQDILDLVGVLHDPETLLRCIAERAFLRHLEGGCSVPVAV 270
Query: 609 FAMVNNFNESEINLRAIITNPNGLKIITAEV----------------------------- 639
+ + ++ L + + +G I +
Sbjct: 271 HTAMKD---GQLYLTGGVWSLDGSDSIQETMQATIHVPAQHEDGPEDDPQLVGITARNIP 327
Query: 640 NGPIDTPETVGLYAAELLKKKGAIEIIK 667
GP + +G+ A LL KGA I+
Sbjct: 328 RGPQLAAQNLGISLANLLLSKGAKNILD 355
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 288 bits (739), Expect = 5e-94
Identities = 87/188 (46%), Positives = 132/188 (70%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKL 186
N+FIISAPSGAGK++LV L+K +IK+SIS TTRP RPG++ G +Y+F + F+ +
Sbjct: 7 ANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAM 66
Query: 187 QKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILP 246
K G FLE A ++ YGT ++R++K+ D+LLEID+QGA+QI++ FP A+ IFILP
Sbjct: 67 VKEGAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILP 126
Query: 247 PSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLKAIINA 306
PS+++L+ERL KR QD +I +R+ A +E+++ +FDY+++N+ F +A+ L II+A
Sbjct: 127 PSIEALRERLIKRRQDDTAIIEQRLALAREEMAHYKEFDYLVVNDNFDQAVQNLIHIISA 186
Query: 307 NRCFMARV 314
R
Sbjct: 187 ERLQRDVQ 194
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 284 bits (730), Expect = 1e-92
Identities = 75/189 (39%), Positives = 114/189 (60%), Gaps = 1/189 (0%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKK-DHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKK 185
G + ++S PSG GK T+ + + K SIS TTR MR GE +G +Y+F D F+
Sbjct: 6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEA 65
Query: 186 LQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFIL 245
L K +F+E+AE GN+YGT + + D+ LEI+ +GAKQ++KKFP+A+ IF+
Sbjct: 66 LIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLA 125
Query: 246 PPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLKAIIN 305
PPSL+ L+ERL RG + + I RI A KE+ N +DY+++N++ A +++ I+
Sbjct: 126 PPSLEHLRERLVGRGTESDEKIQSRINEARKEVEMMNLYDYVVVNDEVELAKNRIQCIVE 185
Query: 306 ANRCFMARV 314
A RV
Sbjct: 186 AEHLKRERV 194
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 284 bits (729), Expect = 2e-92
Identities = 72/189 (38%), Positives = 110/189 (58%), Gaps = 1/189 (0%)
Query: 127 GNIFIISAPSGAGKSTLVNELLK-KDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKK 185
G + ++S PSG GK T+ + K + SIS TTR R GE++G +YYF + + F++
Sbjct: 8 GLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQ 67
Query: 186 LQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFIL 245
K GK LE+AE GN+YGT + ++ + VDI LEI+ QGA Q++K P I IF+
Sbjct: 68 AIKDGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLT 127
Query: 246 PPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLKAIIN 305
PP L LK R+ RG + +V+ R+ +A KEI +DY ++N+ + A+ ++K I+
Sbjct: 128 PPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMMASYDYAVVNDVVANAVQKIKGIVE 187
Query: 306 ANRCFMARV 314
RV
Sbjct: 188 TEHLKTERV 196
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 284 bits (728), Expect = 3e-92
Identities = 92/191 (48%), Positives = 128/191 (67%), Gaps = 2/191 (1%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKD--HKIKLSISTTTRPMRPGEKNGREYYFTNIDNFK 184
G ++I+SAPSGAGKS+L+ LLK + ++S+S TTR RPGE +G Y+F N D FK
Sbjct: 16 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFK 75
Query: 185 KLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFI 244
++ FLE AEV GN+YGTS I + + + VD+ L+ID+QGA+QI++K P+A IFI
Sbjct: 76 EMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFI 135
Query: 245 LPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLKAII 304
LPPS L RL RGQD +VI++R+ A E+S+ ++DY+I+N+ F AL LK II
Sbjct: 136 LPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDDFDTALTDLKTII 195
Query: 305 NANRCFMARVT 315
A R M+R
Sbjct: 196 RAERLRMSRQK 206
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 282 bits (725), Expect = 6e-92
Identities = 67/185 (36%), Positives = 107/185 (57%), Gaps = 2/185 (1%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKL 186
G + ++S PS GKST+V L ++ + S+S TTR RPGE +G +Y+F + F++L
Sbjct: 20 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQL 79
Query: 187 QKSGKFLEWAEVHGNFY--GTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFI 244
G+ LEWAE+HG + GT P+ + V +L+E+D GA+ IKK P A+ +F+
Sbjct: 80 IDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFL 139
Query: 245 LPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLKAII 304
PPS L+ RL RG + DVI RR+ +A E++ FD +++N + A +L +++
Sbjct: 140 APPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLL 199
Query: 305 NANRC 309
Sbjct: 200 VGTAP 204
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 282 bits (724), Expect = 2e-91
Identities = 76/211 (36%), Positives = 118/211 (55%), Gaps = 6/211 (2%)
Query: 105 MATLSLEAQQRHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKD-HKIKLSISTTTR 163
M TL + Q + K G I ++S+PSG GK+T+ N+LL+K + I S+S TTR
Sbjct: 9 MGTLEAQTQGPGSMLKSV----GVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTR 64
Query: 164 PMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLE 223
R GEK G++YYF + + F +L +G+ +E AEV GNFYG + + V LL
Sbjct: 65 AARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLV 124
Query: 224 IDFQGAKQIKKKFP-NAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYAN 282
ID+QGA + + + + IFI+PPS++ L+ RL R D +V+ R+ A EIS+
Sbjct: 125 IDWQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCE 184
Query: 283 KFDYIIINNKFSKALLQLKAIINANRCFMAR 313
+DY+I+N + ++ I+ A + R
Sbjct: 185 AYDYVIVNEDIEETADRISNILRAEQMKTCR 215
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 276 bits (708), Expect = 2e-89
Identities = 66/187 (35%), Positives = 105/187 (56%), Gaps = 4/187 (2%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKD-HKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKK 185
++S PSGAGKSTL+ +L ++ S+S TTR RPGE++G++YYF + ++
Sbjct: 4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQR 63
Query: 186 LQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFIL 245
+G F+E AE GN YGTS + N +L++D QG + IKK I IF+
Sbjct: 64 DIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQ 123
Query: 246 PPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANK---FDYIIINNKFSKALLQLKA 302
PPSLD L++RL R + + +++R+ +A ++ + + FD +IIN+ KA LK
Sbjct: 124 PPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYATLKQ 183
Query: 303 IINANRC 309
++
Sbjct: 184 ALSEEIK 190
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 263 bits (676), Expect = 6e-85
Identities = 72/183 (39%), Positives = 112/183 (61%), Gaps = 4/183 (2%)
Query: 130 FIISAPSGAGKSTLVNELLKK-DHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQK 188
+IS PSG GKSTL+ +L + S+S+TTR R GE NG++Y F ++D FK + K
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIK 63
Query: 189 SGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFP-NAIGIFILPP 247
+ +F+EWA+ GN+YG++ + + KS +L+ID QG K +K NA +FI PP
Sbjct: 64 NNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPP 123
Query: 248 SLDSLKERLYKRGQDKYDVISRRILSANKEISYANK--FDYIIINNKFSKALLQLKAIIN 305
S++ LK+RL RG + + I++R+ +A E++YA D +I+N+ KA +LK I
Sbjct: 124 SVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDKAYKELKDFIF 183
Query: 306 ANR 308
A +
Sbjct: 184 AEK 186
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 264 bits (677), Expect = 7e-85
Identities = 61/188 (32%), Positives = 102/188 (54%), Gaps = 5/188 (2%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKK-DHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKK 185
++ PSG GK TL+ ++L + + + SIS TTR R E NG +YYF + D+F++
Sbjct: 12 IPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFER 71
Query: 186 LQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKK--FPNAIGIF 243
K G+FLE+ + NFYGT + L E++ G KQ+K+ + I IF
Sbjct: 72 KLKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIF 131
Query: 244 ILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANK--FDYIIINNKFSKALLQLK 301
+ PPS+D L RL R +K + I++R+ +E+ A+K F+Y I+N+ ++ +L+
Sbjct: 132 VKPPSIDILLGRLKNRNTEKPEEINKRMQELTREMDEADKVGFNYFIVNDDLARTYAELR 191
Query: 302 AIINANRC 309
+ +
Sbjct: 192 EYLLGSYP 199
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 262 bits (673), Expect = 4e-84
Identities = 68/203 (33%), Positives = 98/203 (48%), Gaps = 5/203 (2%)
Query: 118 LKKKSFKSFGNIFIISAPSGAGKSTLVNELLKK-DHKIKLSISTTTRPMRPGEKNGREYY 176
L + + +I PSG GK TL+ +LL + + S+S TTR R EK G +YY
Sbjct: 14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYY 73
Query: 177 FTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKK- 235
F + F+ K+ FLE+ NFYGT + + N L E++ G KQ+KK
Sbjct: 74 FIDKTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKST 133
Query: 236 -FPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYAN--KFDYIIINNK 292
NA+ IFI PPS D L RL R + + I +R+ N E+ AN F+ IIN+
Sbjct: 134 HIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDD 193
Query: 293 FSKALLQLKAIINANRCFMARVT 315
+ QLK + + + T
Sbjct: 194 LTLTYQQLKNYLLNSYIHLNNHT 216
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 236 bits (605), Expect = 2e-74
Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 11/183 (6%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKD-HKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKK 185
++ SG G+S + N LL ++ K + TTRP R E++G+EY+F + + +
Sbjct: 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTR 78
Query: 186 LQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFIL 245
+ +FLE+ GN +GT F + + K N +L+I+ Q K ++ + +FI
Sbjct: 79 NISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIA 138
Query: 246 PPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLKAIIN 305
P + E L + +D S YA+ FD ++NN + L +L+ +
Sbjct: 139 PTDQGTQTEALQQLQKD----------SEAIRSQYAHYFDLSLVNNGVDETLKKLQEAFD 188
Query: 306 ANR 308
Sbjct: 189 QAC 191
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 228 bits (585), Expect = 1e-71
Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 10/181 (5%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKD-HKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKK 185
++ G G+ + N L+ K + I TTRP + E+NG+ YYF + D +
Sbjct: 5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQ 64
Query: 186 LQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFIL 245
+ ++LE+ YGT I + + + +L+++ Q K ++ +FI
Sbjct: 65 DISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIA 124
Query: 246 PPSLDSLKERLYKRGQDKYDVISRRILSANK-EISYANKFDYIIINNKFSKALLQLKAII 304
P++ G ++ + + R ++ + +YA+ FD IINN+ + + L+ +
Sbjct: 125 APTIT--------PGLNEDESLQRLQKESDILQRTYAHYFDLTIINNEIDETIRHLEEAV 176
Query: 305 N 305
Sbjct: 177 E 177
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 198 bits (506), Expect = 9e-59
Identities = 35/176 (19%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
Query: 136 SGAGKSTLVNELLKKD-HKIKLSISTTTRPMRPGEKNGREYYF-TNIDNFKKLQKSGKFL 193
G K + ++L+ + K + TTRP R E +GR+Y+F ++ + ++ ++ F+
Sbjct: 106 LGPLKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFI 165
Query: 194 EWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLK 253
E + + N YGTS + + +L++ K+++ + +FI P S+DS+
Sbjct: 166 EAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVM 225
Query: 254 ERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLKAIINANRC 309
E + +++ R + E + F ++ + + ++K++I +
Sbjct: 226 EMNRRMTEEQAKKTYER--AIKMEQEFGEYFTGVVQGDTIEEIYSKVKSMIWSQSG 279
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 193 bits (492), Expect = 1e-56
Identities = 40/177 (22%), Positives = 80/177 (45%), Gaps = 6/177 (3%)
Query: 136 SGAGKSTLVNELLKKD-HKIKLSISTTTRPMRPGEKNGREYYF-TNIDNFKKLQKSGKFL 193
G K ++LL + K + TTRP R E +GR+Y+F ++ + +K ++ KF+
Sbjct: 111 LGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFI 170
Query: 194 EWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLK 253
E + + + YGTS + + +L++ ++++ + I IFI P SL+++
Sbjct: 171 EAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVL 230
Query: 254 ERLYKRGQDKYDVISRRILSANK-EISYANKFDYIIINNKFSKALLQLKAIINANRC 309
E + + + A K E + F I+ + F + ++K +I
Sbjct: 231 EI---NKRITEEQARKAFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSG 284
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA
polymerase, stringent response, PPGPP, riken structural
genomics/proteomics initiative; 2.00A {Escherichia coli}
SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Length = 151
Score = 129 bits (326), Expect = 3e-35
Identities = 48/124 (38%), Positives = 78/124 (62%), Gaps = 1/124 (0%)
Query: 1 MSEKDYMNEEQLAFFKFRLKKLENDLLKNIVKTTEYLRE-TILVPDPADRATIEEENTLE 59
++YMNE QLA F+ L+ N L + +T ++++ PDP DRA EEE +LE
Sbjct: 26 KPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLE 85
Query: 60 LRARDRERKLLIKIQQSIINIDKKEYGWCKDTGEPIGILRLLAKPMATLSLEAQQRHELK 119
LR RDRERKL+ KI++++ ++ +++G+C+ G IGI RL A+P A L ++ + E++
Sbjct: 86 LRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIR 145
Query: 120 KKSF 123
+K
Sbjct: 146 EKQM 149
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 126 bits (318), Expect = 2e-30
Identities = 40/172 (23%), Positives = 80/172 (46%), Gaps = 6/172 (3%)
Query: 137 GAGKSTLVNELLKKD-HKIKLSISTTTRPMRPGEKNGREYYF-TNIDNFKKLQKSGKFLE 194
G K ++LL + K + TTRP R E +GR+Y+F ++ + +K ++ KF+E
Sbjct: 538 GPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIE 597
Query: 195 WAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKE 254
+ + + YGTS + + +L++ ++++ + I IFI P SL+++ E
Sbjct: 598 AGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE 657
Query: 255 RLYKRGQDKYDVISRRILSANK-EISYANKFDYIIINNKFSKALLQLKAIIN 305
+ + + A K E + F I+ + F + ++K +I
Sbjct: 658 ---INKRITEEQARKAFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIE 706
>2kq9_A DNAK suppressor protein; zinc binding protein, structural genomics,
PSI-2, protein ST initiative; NMR {Agrobacterium
tumefaciens str}
Length = 112
Score = 110 bits (276), Expect = 5e-29
Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 1/108 (0%)
Query: 6 YMNEEQLAFFKFRLKKLENDLLKNIVKTTEYLRETILVPDPADRATIEEENTLELRARDR 65
+ ++ L+ + +L + + K E PD DRA+ + +
Sbjct: 3 GGKSMNVESYEKILRDRQRELYRRLHKIEADFEEP-RNPDDEDRASERSNDEVLDELGQV 61
Query: 66 ERKLLIKIQQSIINIDKKEYGWCKDTGEPIGILRLLAKPMATLSLEAQ 113
+ L I ++ I +G C G+ I RL A P E
Sbjct: 62 GQDELRAIDAALARIASGTFGTCVKCGKRISEDRLKAVPYTPFCQECA 109
>3lu0_E DNA-directed RNA polymerase subunit omega; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_E*
Length = 91
Score = 84.5 bits (209), Expect = 4e-20
Identities = 33/63 (52%), Positives = 42/63 (66%)
Query: 311 MARVTIEDGLKKINNRFKLTLCAVYRARQLLKGHTKKIIGCDNDKVTVIALREISHGKIG 370
MARVT++D ++KI NRF L L A RARQ+ G ++ +NDK TVIALREI G I
Sbjct: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60
Query: 371 VEI 373
+I
Sbjct: 61 NQI 63
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 88.0 bits (217), Expect = 4e-18
Identities = 107/726 (14%), Positives = 219/726 (30%), Gaps = 220/726 (30%)
Query: 1 MSEKDYMNEEQL-----AFFK-FRLKKLENDLLKNIVKTTEYLRETILVPDPADRATIEE 54
E Y ++ L AF F K ++ D+ K+I+ E I+ D
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEI-DHIIMSKDAVSGT---- 64
Query: 55 ENTLELRARDRERKLLIKI---QQSII-----NIDKKEYGWCKD-----TGEPIGILRLL 101
+L + Q+ ++ + + Y + +P + R+
Sbjct: 65 ------------LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 102 AKPMATLSLEAQ-------QRHELKKK------SFKSFGNIFIISAPSGAGKSTLVNELL 148
+ L + Q R + K + N+ +I G+GK+ + ++
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDVC 171
Query: 149 KKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFF 208
+K++ + + + ++ N K LE + +
Sbjct: 172 -LSYKVQC------------KMDFKIFWL----NLKNCNSPETVLEMLQ---KLL----Y 207
Query: 209 PIVREIKSNVDIL--LEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRG---QDK 263
I S D +++ + ++ LK + Y+
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRL---------------LKSKPYENCLLVLL- 251
Query: 264 YDVISRRILSANKEISYANKFDYIIINNKFSKALL--QLKAIINA-NRCFMARVTIEDGL 320
+V + + +A F+ ++ K LL + K + + + ++++
Sbjct: 252 -NVQNAKAWNA---------FN---LS---CKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 321 KKINNRFKLTLCAVYRARQLLKGHTKKIIGCDNDK----VTVIALREISHGKIGVEIR-- 374
+ +L K + C V R +S I IR
Sbjct: 296 MTLTPDEVKSLLL-------------KYLDCRPQDLPREVLTTNPRRLS--IIAESIRDG 340
Query: 375 LAIWQAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINE-KGLFTKELEMAIIKG 433
LA W W V +TT + L+ E + +F
Sbjct: 341 LATWD------------NWKHVNCDKLTTIIESSLNV--LEPAEYRKMFD---------- 376
Query: 434 KADLAVHSLKDIPMNLPSGFILCAI---LKREDPRDAFISNDYISLSTLPKNAVVGTNSL 490
L+V ++P+ +L I + + D + N S + K T S+
Sbjct: 377 --RLSVFP-PSA--HIPTI-LLSLIWFDVIKSDVMV--VVNKLHKYSLVEKQPKESTISI 428
Query: 491 RRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPN 550
PS+ ++ ++ ++ I+ N+ K F +
Sbjct: 429 ----------PSIY-------LELKVKLENEYALHRSIVD-----HYNIPKT----FDSD 462
Query: 551 QILPAPGQGAIAIEI--------LDNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSC 602
++P I R L M+ L+ F EQ ++ + + + N +GS
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-LDFRFLEQKIRHD-STAWNASGSI 520
Query: 603 KISLAAFA-----MVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELL 657
+L + +N + E + AI+ + E N I + T L A L+
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDF-----LPKIEEN-LICSKYTDLLRIA-LM 573
Query: 658 KKKGAI 663
+ AI
Sbjct: 574 AEDEAI 579
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 84.9 bits (209), Expect = 6e-18
Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 17/184 (9%)
Query: 131 IISAPSGAG---KSTLVNELLKKD-HKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKL 186
++ PS G + L H+ + IS T R R
Sbjct: 146 VLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT-RVTADISLAKRS--------VLNN 196
Query: 187 QKSGKFLEWAEVHGN--FYGTSFFPIVREIKSNVDILLEID-FQGAKQIKKKFPNAIGIF 243
+E + + + I ++ ++L+ D Q+ K I ++
Sbjct: 197 PSKHAIIERSNTRSSLAEVQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVY 256
Query: 244 ILPPSLDSLKERLYKRGQDKYDVISRRILSANKEIS-YANKFDYIIINNKFSKALLQLKA 302
+ S L+ + RG+ + ++ ++++A+K FD I+ N+ A L
Sbjct: 257 VKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFDVILDENQLEDACEHLAD 316
Query: 303 IINA 306
+ A
Sbjct: 317 YLEA 320
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 67.8 bits (165), Expect = 8e-12
Identities = 126/699 (18%), Positives = 207/699 (29%), Gaps = 269/699 (38%)
Query: 37 LRETILVPDPADRATIEEENTLELRA---RDRERKLLIKIQQSIINIDKKEYGWCKDTGE 93
L +LVP A +++ K+L + + D E
Sbjct: 16 LEHVLLVP-----------TASFFIASQLQEQFNKILPEPTEGFAADD-----------E 53
Query: 94 PIGILRLLAKPMATLS-----LEAQQRHELKKKSFKSFGNIFIISAPSGAGKS--TLVNE 146
P L+ K + +S + Q ++ F N ++ G L +
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL------EGNDIHALAAK 107
Query: 147 LLKKDHK--------IK---LSISTTTRPMRPG----------EKNGREYY-F----TNI 180
LL+++ IK + RP E N + F
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 181 DNFKKLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAI 240
D F++L+ Y T + +V ++ L + +K F +
Sbjct: 168 DYFEELRD-------------LYQT-YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 241 GIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQL 300
I L+ L+ +D Y +LS IS +I ++QL
Sbjct: 214 NI------LEWLENPSNTPDKD-Y------LLSI--PISCP------LI------GVIQL 246
Query: 301 KAIINANRCFMARVTIEDGLKKINNRFKLTLCAVYRARQLLKGHTKKIIGCDNDKVTVIA 360
A+ A++ G +L R LKG T G VT +A
Sbjct: 247 -----AHYVVTAKLL---GF----TPGEL--------RSYLKGAT----GHSQGLVTAVA 282
Query: 361 LREISHGKIGVE--------IRLAIWQAEYVRKKIIELYPWCKVE--ILGITTKGDKIFE 410
I+ I + + VR E YP + IL + + + E
Sbjct: 283 ---IAETDSWESFFVSVRKAITVLFFIG--VRCY--EAYPNTSLPPSILEDSLENN---E 332
Query: 411 KVP---LKINEKGLFTKELEMAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDA 467
VP L I L ++++ + K + L P
Sbjct: 333 GVPSPMLSI--SNLTQEQVQDYVNKTNSHL--------------------------PAGK 364
Query: 468 FISNDYISLSTLPKNAVV-GTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAA 526
+ ISL KN VV G P +SL G ++ L K K
Sbjct: 365 QV---EISLVNGAKNLVVSG-------------PP----QSLYG-LNLTLRKA-K----- 397
Query: 527 IILAAAGLKRLNLQKRI----RML-FSPNQILP--AP-------------GQGAIAIEIL 566
A +GL Q RI R L FS N+ LP +P + + +
Sbjct: 398 ---APSGLD----QSRIPFSERKLKFS-NRFLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 567 DNRKELMEMLIPLNHYFSEQTVKAERAVSRNFNGSCKISLAAFAMVNNFN-ESEINLRA- 624
N K++ IP+ F + R +GS + + E+ +A
Sbjct: 450 FNAKDIQ---IPVYDTFDGSDL-------RVLSGSISERIVDCIIRLPVKWETTTQFKAT 499
Query: 625 -II-------------TNPN----GLKIITAEVNGPIDT 645
I+ T+ N G+++I A G +D
Sbjct: 500 HILDFGPGGASGLGVLTHRNKDGTGVRVIVA---GTLDI 535
Score = 52.4 bits (125), Expect = 4e-07
Identities = 55/328 (16%), Positives = 103/328 (31%), Gaps = 113/328 (34%)
Query: 376 AIW-QAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAII-KG 433
+W +A+ + Y + IL I EKG +E A+I +
Sbjct: 1644 DVWNRAD---NHFKDTYGF---SILDIVINNPV--NLTIHFGGEKGKRIRENYSAMIFET 1695
Query: 434 KADLAVHS---LKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKN---AVVGT 487
D + + K+I + S + + L + + A+
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTS-YTF------RSEKGL--------L-SATQFTQPALT-L 1738
Query: 488 NS------LRRKVLIK--SFFP--SLIIKSLRGNIDTRLNKLDKGEYAAIILAA-AGLKR 536
L+ K LI + F SL GEYAA LA+ A +
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSL------------------GEYAA--LASLADV-- 1776
Query: 537 LNLQKRIRMLF----SPNQILPAPGQGAIAIEILDNRKELMEMLIPLNHYFSEQTVKA-- 590
++++ + ++F + +P G ++ + FS++ ++
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS------FSQEALQYVV 1830
Query: 591 ERAVSRNFNGSCKISLAAFAMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVG 650
ER V + +I V N+N N + ++ +DT
Sbjct: 1831 ER-VGKRTGWLVEI-------V-NYNV-----------ENQQYVAAGDLRA-LDT----- 1864
Query: 651 LYAAELLK--KKGAIEIIK-----SYEK 671
+L K I+II+ S E+
Sbjct: 1865 --VTNVLNFIKLQKIDIIELQKSLSLEE 1890
Score = 46.6 bits (110), Expect = 3e-05
Identities = 48/329 (14%), Positives = 100/329 (30%), Gaps = 137/329 (41%)
Query: 356 VTVIALR--EISHGKIGVEIRLAI-----WQAEYVRKK--------------------II 388
+ + R +SHG + E L + + A ++++
Sbjct: 1 MDAYSTRPLTLSHGSL--EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 389 ELYPWCKVEILG-ITTKGDKI----FEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLK 443
EL + LG +++ + F++V L L E E ++G D +H+L
Sbjct: 59 ELV----GKFLGYVSSLVEPSKVGQFDQV-LN-----LCLTEFENCYLEGN-D--IHAL- 104
Query: 444 DIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRKVLIKSFFPSL 503
+ L + T ++ K LIK++ +
Sbjct: 105 --------------------------------AAKLLQEN--DTTLVKTKELIKNYITAR 130
Query: 504 IIKSLRGNIDTRLNK-LDKGEYAAIILAA-AGLKRLNLQKRIRMLFSPNQILPAPGQGAI 561
I+ + DK +A+ A G ++ +F GQG
Sbjct: 131 IM----------AKRPFDKKSNSALFRAVGEG------NAQLVAIF--------GGQGNT 166
Query: 562 AIEILDNRKELMEMLIPLNHYFSE-QTV-KAERAVSRNFNGSCKISLAAFAMVNNFNESE 619
+ YF E + + + + + I +A ++ +
Sbjct: 167 ------------------DDYFEELRDLYQTYHVLVGDL-----IKFSA-ETLSELIRTT 202
Query: 620 INLRAIITNPNGLKIITAEVNGPIDTPET 648
++ + GL I+ + P +TP+
Sbjct: 203 LDAEKVF--TQGLNILEW-LENPSNTPDK 228
Score = 40.0 bits (93), Expect = 0.003
Identities = 58/311 (18%), Positives = 96/311 (30%), Gaps = 106/311 (34%)
Query: 335 YR----ARQLLK---GHTKKIIGCDNDKVTVIALREISHGKIGVE---IRLAIWQAEYVR 384
Y+ A+ + H K G ++ +I V + L I
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYG--------FSILDI------VINNPVNLTIHFGGEKG 1681
Query: 385 KKIIELYPWCKVE-ILGITTKGDKIFEKVPLKIN------EKG-----------LFTKEL 426
K+I E Y E I+ K +KIF+++ EKG L +
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL--M 1739
Query: 427 EMAI---------IKGKADLAVHSLKDIPMNLPSG-FI-LCAILKREDPRDAFISNDYIS 475
E A I A A HSL G + L ++ A D +S
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSL---------GEYAALASL--------A----DVMS 1778
Query: 476 LSTLPKNAVVGTNSLRRKVLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLK 535
+ +L + VV R ++ P + G + + ++ G A + L+
Sbjct: 1779 IESLVE--VV---FYRGM-TMQVAVP----RDELGRSNYGMIAINPGR-VAASFSQEALQ 1827
Query: 536 RL--NLQKRIRMLFSP---NQILPAPGQ-----G---AI--AIEILDNRKELMEMLIPLN 580
+ + KR L N Q G A+ +L+ K +I L
Sbjct: 1828 YVVERVGKRTGWLVEIVNYN----VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQ 1883
Query: 581 HYFSEQTVKAE 591
S + V+
Sbjct: 1884 KSLSLEEVEGH 1894
Score = 38.1 bits (88), Expect = 0.010
Identities = 45/288 (15%), Positives = 78/288 (27%), Gaps = 109/288 (37%)
Query: 27 LKNIVKT--TEYLRETILVPDPADRATIEEENTLELRARDRERKLLIKIQQSIINIDKKE 84
+ +IV TI + E + + + KI + I N
Sbjct: 1661 ILDIVINNPVNL---TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI-NEHSTS 1716
Query: 85 YGWCKDTGEPIGILRL--LAKP-MATLSLEAQQRHELKKKSFKSFGNIFIISAPSGAGKS 141
Y + G+L +P + + A +LK K F AG
Sbjct: 1717 YTF----RSEKGLLSATQFTQPALTLMEK-AAFE-DLKSKGLIPADATF-------AG-- 1761
Query: 142 TLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYY-----FTNIDNFK---KL-QKSGKF 192
H S+ GE Y ++ + + ++ G
Sbjct: 1762 ----------H----SL---------GE------YAALASLADVMSIESLVEVVFYRGMT 1792
Query: 193 LEWAEVHGNFYGTSFF------P--------------IVREIKSNVDILLEI------DF 226
++ A V + G S + P +V + L+EI +
Sbjct: 1793 MQVA-VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQ 1851
Query: 227 Q----G-----------AKQIKKKFPNAIGIFILP--PSLDSLKERLY 257
Q G IK + I I L SL+ ++ L+
Sbjct: 1852 QYVAAGDLRALDTVTNVLNFIKLQ---KIDIIELQKSLSLEEVEGHLF 1896
Score = 31.2 bits (70), Expect = 1.5
Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 50/126 (39%)
Query: 575 MLIPLNHYFSEQTVKAE-----RAVSRNFNG----SCKISLAA-F--------------- 609
+L+P +F ++ + + F + L F
Sbjct: 20 LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 610 ------AMVNNFNESEINLRAIITNPNGLKIITAEVNGPIDTPETVGLYAAELLKKKGAI 663
+ F E+ L N + + A++ DT L+K K
Sbjct: 80 FDQVLNLCLTEF-ENCY-LEG-----NDIHALAAKLLQENDTT---------LVKTK--- 120
Query: 664 EIIKSY 669
E+IK+Y
Sbjct: 121 ELIKNY 126
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 55.7 bits (133), Expect = 3e-08
Identities = 16/124 (12%), Positives = 37/124 (29%), Gaps = 2/124 (1%)
Query: 184 KKLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIF 243
+ + + I + I + LL++ ++ I +F
Sbjct: 248 IYQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVF 307
Query: 244 ILPPSLDSLKERLYKRGQDKYDVISRRILSANK-EISYANKFDYII-INNKFSKALLQLK 301
+ P S +K + + + ++K + + F I +N+ LK
Sbjct: 308 LNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALK 367
Query: 302 AIIN 305
I
Sbjct: 368 EAIQ 371
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 54.8 bits (131), Expect = 4e-08
Identities = 18/147 (12%), Positives = 40/147 (27%), Gaps = 13/147 (8%)
Query: 161 TTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDI 220
R E+ + + + I + I +
Sbjct: 244 VAREKLAREEPDIYQI-----------AKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHA 292
Query: 221 LLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANK-EIS 279
LL++ ++ I +F+ P S +K + + + ++K +
Sbjct: 293 LLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKN 352
Query: 280 YANKFDYII-INNKFSKALLQLKAIIN 305
+ F I +N+ LK I
Sbjct: 353 NHHLFTTTINLNSMNDGWYGALKEAIQ 379
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 53.7 bits (128), Expect = 7e-08
Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 2/108 (1%)
Query: 200 GNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKR 259
+ + + LL++ +++ I +F +P S +LK
Sbjct: 181 SPSKIIKLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQWL 240
Query: 260 GQDKYDVISRRILSANK-EISYANKFDYIIINNKFSKALL-QLKAIIN 305
R A K ++ F I N S +LKAII
Sbjct: 241 APASRRSTRRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIR 288
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 41.9 bits (97), Expect = 1e-04
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 23/49 (46%)
Query: 9 EEQLAFFKFRLKKLENDLLKNIVKTTEYLRETILVPD--P--ADRATIE 53
E+Q LKKL+ L K Y D P A +AT+E
Sbjct: 18 EKQ------ALKKLQASL-----KL--Y------ADDSAPALAIKATME 47
Score = 33.8 bits (76), Expect = 0.067
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 114 QRHELKK--KSFKSFGNIFIISAPSGAGKSTL 143
++ LKK S K + + SAP+ A K+T+
Sbjct: 18 EKQALKKLQASLKLYADD---SAPALAIKATM 46
Score = 28.0 bits (61), Expect = 6.9
Identities = 7/26 (26%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 48 DRATIEE-ENTLELRARDRERKLLIK 72
++ +++ + +L+L A D L IK
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK 43
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered,
structural proteomics, META binding, zinc-finger,
structural genomics; NMR {Escherichia coli}
Length = 108
Score = 40.7 bits (95), Expect = 1e-04
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 16/84 (19%)
Query: 46 PADRATIEEENTLEL---RARDRERKLLIKIQQSIINIDKKEYGWCKDTGEPIGILRLLA 102
D + +T+E RAR + + C++ G PI R A
Sbjct: 27 NDDAVNEQINSTIEDAIARARGEIPR-------------GESLDECEECGAPIPQARREA 73
Query: 103 KPMATLSLEAQQRHELKKKSFKSF 126
P L + QQ +L+K ++ +
Sbjct: 74 IPGVRLCIHCQQEKDLQKPAYTGY 97
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 37.0 bits (85), Expect = 0.010
Identities = 24/143 (16%), Positives = 42/143 (29%), Gaps = 25/143 (17%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKL 186
GNI ++S G+GKST+ L K+ + D+
Sbjct: 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHS--------------------DDLWGY 48
Query: 187 QKSGKFLEW----AEVHGNFYGTSFFPIVREIKSNVDILLE-IDFQGAKQIKKKFPNAIG 241
K G+ W + + + R K ++L+ + +
Sbjct: 49 IKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLH 108
Query: 242 IFILPPSLDSLKERLYKRGQDKY 264
+L + ER RG D
Sbjct: 109 YIVLRTTAAEAIERCLDRGGDSL 131
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 36.7 bits (85), Expect = 0.016
Identities = 34/213 (15%), Positives = 64/213 (30%), Gaps = 32/213 (15%)
Query: 93 EPIGILRLLAKPMATLSLEAQQRHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDH 152
E +G + A L + + S + ++ G GKS+ VN L+ +
Sbjct: 7 EWVGFQQFPAATQEKLIEFFGKLKQKDMNSM----TVLVLGKG-GVGKSSTVNSLIGEQV 61
Query: 153 -KIKLSISTTTRP-MRPGEKNGREYYF--------TNIDNFKKLQKSGKFLEWAEVHGNF 202
++ + RP M G N + L+ FL +
Sbjct: 62 VRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTID--- 118
Query: 203 YGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIG---IFILPPSLDSLKERLYKR 259
++ + +V + E+D Q I + F I + +L + +
Sbjct: 119 ------VLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVL-----THAQFSPPD 167
Query: 260 GQDKYDVISRRILSANKEISYANKFDYIIINNK 292
S+R S K I +K +
Sbjct: 168 ELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDS 200
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 36.9 bits (86), Expect = 0.020
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLS-IST-------TTR 163
G I I + SG GKS+L+N LL ++I + +S TT
Sbjct: 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTT 259
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 35.5 bits (81), Expect = 0.023
Identities = 20/138 (14%), Positives = 40/138 (28%), Gaps = 10/138 (7%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKK--DHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFK 184
+ I++ S AGKS +V L + + + + M ++ + D
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGV 62
Query: 185 KLQKSGKFLE--WAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGI 242
+ + LE WAE I+ ++ E + +
Sbjct: 63 SIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQER----WRSFVGDLD--VLW 116
Query: 243 FILPPSLDSLKERLYKRG 260
+ + R RG
Sbjct: 117 VGVRCDGAVAEGRETARG 134
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 35.7 bits (82), Expect = 0.023
Identities = 23/141 (16%), Positives = 39/141 (27%), Gaps = 20/141 (14%)
Query: 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPM-RPGEKNGREYYFTN---IDNF 183
++II+ P+G GKST L + M G + E N
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNI 62
Query: 184 KKLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIF 243
L + + N + E ++ + I
Sbjct: 63 TDLTVN------FLLAQNDVVLDYIAFPDEAEALAQTVQAKVDD----------VEIRFI 106
Query: 244 ILPPSLDSLKERLYKRGQDKY 264
IL + + L R R +D+
Sbjct: 107 ILWTNREELLRRDALRKKDEQ 127
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 36.0 bits (84), Expect = 0.030
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSIST-------TTR 163
G I I++ PSG GKS++++ L ++ + + +S TT
Sbjct: 165 GFICILAGPSGVGKSSILSRLTGEELRTQ-EVSEKTERGRHTTT 207
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 35.1 bits (82), Expect = 0.071
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 138 AGKSTLVNELLKKDHKIKLSISTTTR-----PMRPGEKNGREYYFTNID 181
GKS+LVN +L ++ I +++ TTR N +E+ +D
Sbjct: 186 VGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSF---TYNQQEFVI--VD 229
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 34.6 bits (79), Expect = 0.10
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 108 LSLEAQQRHELKK--KSFKSFGNIFIISAPSGAGKSTLVNELLK-----KDHKIKL 156
L Q++ K+ K + I+ P+G G +TL +++ + I L
Sbjct: 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIIL 79
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A*
1us8_A*
Length = 149
Score = 33.1 bits (76), Expect = 0.11
Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 21/129 (16%)
Query: 116 HELKKKSFKSFGN--------IFIISAPSGAGKSTLV--------NELLKKDHKIKLSIS 159
+ K+F+S + I +I +G+GKS+L+ L KD K
Sbjct: 4 ERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTK 63
Query: 160 TTTRPMR---PGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIVREIKS 216
R EK+G +Y T F K SG+ + GN + P + I +
Sbjct: 64 VGARDTYIDLIFEKDGTKYRITR--RFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISA 121
Query: 217 NVDILLEID 225
++ L+ +
Sbjct: 122 FMEKLIPYN 130
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 34.0 bits (79), Expect = 0.12
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 127 GNIFIISAPSGAGKSTLVNELL 148
G I ++ SG GKS+L+N +
Sbjct: 169 GKISTMAGLSGVGKSSLLNAIN 190
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 33.7 bits (78), Expect = 0.15
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 127 GNIFIISAPSGAGKSTLVNELL 148
+ + SG GKS+L+N +
Sbjct: 173 DKTTVFAGQSGVGKSSLLNAIS 194
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 34.0 bits (79), Expect = 0.15
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 138 AGKSTLVNELLKKDHKIKLSISTTTR-----PMRPGEKNGREYYFTNID 181
GKSTL N +L K+ + I TTR + +GR+Y F +D
Sbjct: 191 VGKSTLFNAILNKERALVSPIPGTTRDPVDDEV---FIDGRKYVF--VD 234
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 33.8 bits (77), Expect = 0.15
Identities = 27/153 (17%), Positives = 42/153 (27%), Gaps = 28/153 (18%)
Query: 136 SGAGKSTLVNELLKKDH-KIKLSISTTTRPMR-PGEKNGREYYF--------TNIDNFKK 185
G GKS+ VN ++ + I S RP+ + G N
Sbjct: 48 GGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMA 107
Query: 186 LQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFI- 244
L FL + ++ + + + +D AK I F I
Sbjct: 108 LNIIKSFLLDKTID---------VLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAI 158
Query: 245 --------LPPSLDSLKERLYKRGQDKYDVISR 269
PP E KR + V+
Sbjct: 159 VALTHAQFSPPDGLPYDEFFSKRSEALLQVVRS 191
>2jzj_A Cyanovirin-N homolog; CVNH, antiviral protein, carbohydrate binding
protein; NMR {Ceratopteris richardii}
Length = 124
Score = 32.2 bits (73), Expect = 0.16
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 577 IPLNHYFSEQTVKAERAVSRNFNGSCK-ISLAAFAMVN--------NFNESEINLRAIIT 627
I LN+Y + E +F SC +L + +++S ++L ++
Sbjct: 35 INLNYYIGNDNGRLEYP-GESFGSSCVKTALNDGHTLTASCKGADGQYHDSSMDLNYVVG 93
Query: 628 NPNG 631
N G
Sbjct: 94 NSYG 97
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 33.7 bits (78), Expect = 0.21
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 136 SGAGKSTLVNELLKK 150
SG+GKSTLVN++L
Sbjct: 677 SGSGKSTLVNDILAA 691
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 33.2 bits (77), Expect = 0.23
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 10/49 (20%)
Query: 119 KKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSIST----TTR 163
G I I+ P+ GKSTL+N+LL + K+SI++ TTR
Sbjct: 2 SIDKSYC-GFIAIVGRPN-VGKSTLLNKLLGQ----KISITSRKAQTTR 44
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 33.6 bits (78), Expect = 0.24
Identities = 12/15 (80%), Positives = 14/15 (93%)
Query: 136 SGAGKSTLVNELLKK 150
SG+GKSTLVNE+L K
Sbjct: 659 SGSGKSTLVNEVLYK 673
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 33.1 bits (75), Expect = 0.25
Identities = 22/136 (16%), Positives = 40/136 (29%), Gaps = 14/136 (10%)
Query: 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSIST-TTRPMRPGEKNGREYYFTNIDNFKKLQ 187
I + G+GKST E + K+ I+ R + EY +T
Sbjct: 4 IILTIGCPGSGKSTWAREFIAKNPGFYN-INRDDYRQSIMAHEERDEYKYTKKKEGIVTG 62
Query: 188 KSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDI--LLEIDFQGAKQIKKKFPNAIGIFIL 245
+ G+ S ++ + L + K++ + +
Sbjct: 63 MQFDTAKSILYGGD----SVKGVI------ISDTNLNPERRLAWETFAKEYGWKVEHKVF 112
Query: 246 PPSLDSLKERLYKRGQ 261
L +R KRG
Sbjct: 113 DVPWTELVKRNSKRGT 128
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 33.6 bits (78), Expect = 0.26
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 136 SGAGKSTLVNELLKK 150
SG+GKSTLV++ L
Sbjct: 532 SGSGKSTLVSQALVD 546
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 33.3 bits (77), Expect = 0.28
Identities = 12/15 (80%), Positives = 14/15 (93%)
Query: 136 SGAGKSTLVNELLKK 150
SG+GKSTLVNE+L K
Sbjct: 357 SGSGKSTLVNEVLYK 371
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 33.2 bits (77), Expect = 0.31
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 136 SGAGKSTLVNELLKK 150
SG+GKS+LV E L
Sbjct: 619 SGSGKSSLVMETLYP 633
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 32.1 bits (73), Expect = 0.33
Identities = 23/152 (15%), Positives = 41/152 (26%), Gaps = 28/152 (18%)
Query: 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSIST-TTRPMRPGEKNGREYYFTNIDNFKKLQ 187
I + G+GKST E + K+ I+ R + EY +T
Sbjct: 4 IILTIGCPGSGKSTWAREFIAKNPGFYN-INRDDYRQSIMAHEERDEYKYTKKKEGIVTG 62
Query: 188 KSGKFLEWAEVHGNFYGTSFFPIV--------REIKSNVDILLEIDFQGAKQIKKKFPNA 239
+ G+ S ++ + E ++
Sbjct: 63 MQFDTAKSILYGGD----SVKGVIISDTNLNPERRLAWETFAKEYGWK------------ 106
Query: 240 IGIFILPPSLDSLKERLYKRGQDK--YDVISR 269
+ + L +R KRG DV+
Sbjct: 107 VEHKVFDVPWTELVKRNSKRGTKAVPIDVLRS 138
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 32.4 bits (75), Expect = 0.41
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 10/51 (19%)
Query: 117 ELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSIST----TTR 163
K G + I+ P+ GKSTL+N LL K+SI + TTR
Sbjct: 2 HHHHHHMKV-GYVAIVGKPN-VGKSTLLNNLLGT----KVSIISPKAGTTR 46
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 32.0 bits (73), Expect = 0.56
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 113 QQRHELKKKSFKSFGNIFI--ISAPSGAGKSTLVNEL----LKKDHKI 154
+L G I+ G GKST ++ L HK+
Sbjct: 39 AAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV 86
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 32.0 bits (74), Expect = 0.61
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 10/47 (21%)
Query: 121 KSFKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSIST----TTR 163
+ S G + I+ P+ GKSTL+N LL K++ + TTR
Sbjct: 3 EKTYS-GFVAIVGKPN-VGKSTLLNNLLGV----KVAPISPRPQTTR 43
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 31.7 bits (71), Expect = 0.64
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 109 SLEAQQRHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPG 168
+L Q + KK F+ + ++ SG GKSTL+N L D + IS +
Sbjct: 3 NLPNQVHRKSVKKGFE--FTLMVVGE-SGLGKSTLINSLFLTDLYPERVISGAAEKIERT 59
Query: 169 EKNGREYYFTNIDNFK 184
+ K
Sbjct: 60 VQIEASTVEIEERGVK 75
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 31.9 bits (73), Expect = 0.68
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 127 GNIFIISAPSGAGKSTLV 144
G I+ + SGAGKSTL+
Sbjct: 54 GQIYGVIGASGAGKSTLI 71
>3s3z_A CV-N, tandem cyanovirin-N dimer CVN2L10; sugar-binding, GP120,
engineered dimer, antivi protein; 1.75A {Nostoc
ellipsosporum} PDB: 3s3y_A 1n02_A
Length = 223
Score = 31.5 bits (71), Expect = 0.69
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 10/64 (15%)
Query: 577 IPLNHYFSEQTVKAERAVSRNFNGSCK-------ISLAAFAMVNN--FNESEINLRAIIT 627
I LN + NF +C+ LAA F ++INL I
Sbjct: 45 IDLNSVIENVDGSLKWQ-PSNFIETCRNTQLAGSSELAAECKTRAQQFVSTKINLDDHIA 103
Query: 628 NPNG 631
N +G
Sbjct: 104 NIDG 107
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 31.8 bits (72), Expect = 0.70
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 8/36 (22%)
Query: 116 HELKKKSFKSFGN--------IFIISAPSGAGKSTL 143
L ++F N I ++ P+GAGKS+L
Sbjct: 4 ERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSL 39
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural
genomics, APC84050.2, PS protein structure initiative;
HET: MSE; 1.82A {Neisseria meningitidis MC58}
Length = 199
Score = 31.2 bits (70), Expect = 0.71
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 11/60 (18%)
Query: 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQK 188
I +I+ G+GK+ + ++ D K + R FTNI K
Sbjct: 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRK-----------VFTNIKGLKIPHT 55
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 31.3 bits (71), Expect = 0.93
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 113 QQRHELKKKSFKSFGNIFI--ISAPSGAGKSTLVNEL----LKKDHKI 154
+L GN ++ GAGKST + +++ K+
Sbjct: 40 ALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV 87
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 30.8 bits (70), Expect = 1.0
Identities = 26/178 (14%), Positives = 56/178 (31%), Gaps = 23/178 (12%)
Query: 132 ISAPSGAGKSTLVNEL---LKKDHKIKLSIST----TTRPMRPGEKNGREYYFT--NIDN 182
I S +GK+TL N+L L++ R R N + + D
Sbjct: 27 IDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDV 86
Query: 183 -------FKKLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKK 235
F++L K+ L + + + + I++E F K+ +
Sbjct: 87 EWLTHQLFRQL-KASHQLTLPFY--DHETDTHSKRTVYLSDSDMIMIEGVFLQRKEWRPF 143
Query: 236 FPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDY--IIINN 291
F +++ P + Q+ I+R + + + ++ +
Sbjct: 144 F--DFVVYLDCPREIRFARENDQVKQNIQKFINRYWKAEDYYLETEEPIKRADVVFDM 199
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 31.4 bits (71), Expect = 1.1
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 127 GNIFIISAPSGAGKST-----LVNELLKKDHKI 154
+ I+ GAGK+ +V E L + +
Sbjct: 19 KRLTIMDLHPGAGKTKRILPSIVREALLRRLRT 51
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin
nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Length = 715
Score = 31.2 bits (71), Expect = 1.2
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 15/65 (23%)
Query: 98 LRLLAKPMATLSLEAQQRHELKKKSFKSF--------------GNIFIISAPSGAGKSTL 143
L L P+ L L + +KK+ K GN ++++P+G+GK TL
Sbjct: 3 LELEWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGK-TL 61
Query: 144 VNELL 148
+ E+
Sbjct: 62 IAEMG 66
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 31.1 bits (70), Expect = 1.3
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 127 GNIFIISAPSGAGKSTLVNELL 148
N I+ A GAGKS LL
Sbjct: 36 SNWTIL-AKPGAGKSFTAKMLL 56
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 30.7 bits (69), Expect = 1.3
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 136 SGAGKSTLVNELLKKDH-KIKLSISTTTRPMRPGEKNGREYYFTNID 181
+GAGKS N +L + + + T+ + +E +D
Sbjct: 38 TGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVD 84
>2jzk_A Cyanovirin-N homolog; CVNH, antiviral protein, carbohydrate binding
protein; NMR {Tuber borchii}
Length = 106
Score = 29.1 bits (65), Expect = 1.4
Identities = 12/65 (18%), Positives = 18/65 (27%), Gaps = 11/65 (16%)
Query: 577 IPLNHYFSEQTVKAERAVSRNFNGSCK-ISLAAFAMV---------NNFNESEINLRAII 626
+ L+ +NF+ S + I L F E + I
Sbjct: 38 LDLDTCIGNPNGFLGWG-MQNFSHSSEDIKLEEGGRKLTCRPKTVDGGFRERQGIDLNRI 96
Query: 627 TNPNG 631
N NG
Sbjct: 97 QNVNG 101
>2a6h_E RNA polymerase omega chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: a.143.1.1
PDB: 1smy_E* 1zyr_E* 1iw7_E* 2a69_E* 2a6e_E 2a68_E*
2be5_E* 2cw0_E 3dxj_E* 2o5i_E 2o5j_E* 2ppb_E* 3aoh_E*
3aoi_E* 3eql_E* 1ynj_K* 1i6v_E* 1l9u_E 1l9z_E 1hqm_E*
...
Length = 99
Score = 29.1 bits (64), Expect = 1.5
Identities = 19/96 (19%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 311 MARVTIEDGLKKINNRFKLTLCAVYRARQLLKG-------------HTKKIIGCDNDKVT 357
MA I+ ++++++LT+ RA+QLL+ + + G +D
Sbjct: 1 MAEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHGFKNTVLEPEERPKMQTLEGLFDDPNA 60
Query: 358 V-IALREISHGKIGVEIRLAIWQAEYVRKKIIELYP 392
A++E+ G++ L + ++K++ +YP
Sbjct: 61 ETWAMKELLTGRLVFGENLV--PEDRLQKEMERIYP 94
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP
binding, structure function project, S2F, unknown
function; 2.00A {Escherichia coli} SCOP: c.37.1.10
d.237.1.1
Length = 318
Score = 30.6 bits (70), Expect = 1.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 137 GAGKSTLVNELLKKDH 152
GAGK+TL+ +L + H
Sbjct: 14 GAGKTTLLRHILNEQH 29
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 30.0 bits (67), Expect = 1.8
Identities = 34/184 (18%), Positives = 59/184 (32%), Gaps = 33/184 (17%)
Query: 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQ 187
NI + P G GK+TL EL K +++ R + + EY +D + +
Sbjct: 13 NILLTGTP-GVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVD 71
Query: 188 KSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPP 247
+ L+ G IV + +F+L
Sbjct: 72 E----LDNQMREGGV-------IVDYHGCDFFPERWFHI---------------VFVLRT 105
Query: 248 SLDSLKERLYKRG------QDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLK 301
+ L ERL RG D ++L SY + + + +NK + +
Sbjct: 106 DTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNVD 165
Query: 302 AIIN 305
I+
Sbjct: 166 QILK 169
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 30.6 bits (69), Expect = 1.8
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 127 GNIFIISAPSGAGKST-----LVNELLKKDHKI 154
G ++ GAGK+ ++ E ++ +
Sbjct: 8 GMTTVLDFHPGAGKTRRFLPQILAECARRRLRT 40
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 30.6 bits (69), Expect = 1.9
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 113 QQRHELKKKSFKSFGNIFI--ISAPSGAGKSTLVN----ELLKKDHKI 154
+Q +L + GN I+ G GKST + L+++ H++
Sbjct: 63 EQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRV 110
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 29.5 bits (66), Expect = 2.3
Identities = 27/143 (18%), Positives = 46/143 (32%), Gaps = 14/143 (9%)
Query: 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQK 188
I I+ P G GK+ + L + +L S P G+ + + D +
Sbjct: 7 IIWINGPFGVGKTHTAHTLHE-----RLPGSFVFEPEEMGQALRKLTPGFSGDPQEHPMW 61
Query: 189 SGKFLE-WAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPP 247
L+ G P V I + K ++ F L
Sbjct: 62 IPLMLDALQYASREAAGPLIVP--------VSISDTARHRRLMSGLKDRGLSVHHFTLIA 113
Query: 248 SLDSLKERLYKRGQDKYDVISRR 270
L+ + ERL + GQ + +V +
Sbjct: 114 PLNVVLERLRRDGQPQVNVGTVE 136
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 29.8 bits (66), Expect = 2.4
Identities = 40/266 (15%), Positives = 75/266 (28%), Gaps = 44/266 (16%)
Query: 102 AKPMATLSLEAQQRHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKL----- 156
MAT + S + I AGKST VN L + ++
Sbjct: 1 GSHMATPPKRS--CPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPV 58
Query: 157 -------SISTTTRPMRPGEKNGR-----------------EYYFTNIDNFKKLQKSGKF 192
S + +KNG + Y +L
Sbjct: 59 ARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGK 118
Query: 193 LEWAEVHGNFYGTSFFP---IVREIKSNVDILLEIDFQGAKQIK-------KKFPNAIGI 242
L+ AE F+ S + I + + E ++ + + GI
Sbjct: 119 LKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGI 178
Query: 243 FILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLKA 302
L + ++ R+Y RG+++ I L + + + + F
Sbjct: 179 IYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHY-KHESWLLHRTLKTNFDYLQEVPIL 237
Query: 303 IINANRCFMARVTIEDGLKKINNRFK 328
++ N F + E ++K+
Sbjct: 238 TLDVNEDFKDK--YESLVEKVKEFLS 261
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 30.2 bits (68), Expect = 2.5
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 127 GNIFIISAPSGAGKSTLV-NELLKKDHKIKLSISTT--TRPM 165
+ ++ GAGK+ V +L+++ K +L TR +
Sbjct: 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVV 43
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 29.7 bits (66), Expect = 2.5
Identities = 31/239 (12%), Positives = 57/239 (23%), Gaps = 45/239 (18%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKL---------SISTTTRPMRPGEKNGREY-- 175
GNI GKST V L K + + +I ++
Sbjct: 9 GNI-------AVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLD 61
Query: 176 --------------------YFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIVREIK 215
+ + Y + +
Sbjct: 62 MMYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFE 121
Query: 216 SNVDILLEID-----FQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRR 270
+ +E G L S +RLY+R +++ I
Sbjct: 122 NGSLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELA 181
Query: 271 ILSANKEISYANKFDYIIINNKFSKALLQLKAIINANRCFMARVT-IEDGLKKINNRFK 328
L + + F + +++ N F VT ED ++++N K
Sbjct: 182 YLEQLHG-QHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREVNTFVK 239
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 30.2 bits (69), Expect = 2.6
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 135 PSGAGKSTLVN 145
SG+GKST+ +
Sbjct: 377 RSGSGKSTIAS 387
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 29.7 bits (66), Expect = 2.7
Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 9/129 (6%)
Query: 120 KKSFKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTN 179
F+ F + ++ SG GKSTL+N L D L P +K +
Sbjct: 4 GSGFE-F-TLMVVGE-SGLGKSTLINSLFLTD----LYSPEYPGPSHRIKKTVQVEQSKV 56
Query: 180 IDNFKKLQKSGKFLEWAEVHGNF-YGTSFFPIVREIKSNVDILLEIDFQGA-KQIKKKFP 237
+ +Q ++ + P++ I S + L + + +Q+
Sbjct: 57 LIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRV 116
Query: 238 NAIGIFILP 246
FI P
Sbjct: 117 QCCLYFIAP 125
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 29.2 bits (65), Expect = 2.8
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 128 NIFIISAPSGAGKSTLVNELLKK 150
N++ + +GK+TL+ + +
Sbjct: 5 NVWQVVGYKHSGKTTLMEKWVAA 27
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 29.4 bits (66), Expect = 2.9
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 104 PMATLSLEAQQRHELKKKSFKSFGNIFII--SAPSGAGKSTLVNELLKK 150
MA S + Q H+ G F+I S + +GKS++ ++++
Sbjct: 2 GMAGDSEQTLQNHQQPNG-----GEPFLIGVSGGTASGKSSVCAKIVQL 45
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 29.9 bits (68), Expect = 2.9
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 135 PSGAGKSTLVN 145
SG+GKST+ N
Sbjct: 377 RSGSGKSTIAN 387
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 29.3 bits (65), Expect = 3.0
Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 24/137 (17%)
Query: 128 NIFIISAPSGAGKSTLVNELLKKDHKIK-LSISTTTRPMRPGEKNGREYYFTNIDNFKKL 186
NI I P G GK+++ + + + L + + + E T+I K
Sbjct: 12 NILITGTP-GTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTE-LDTHIIEEKDE 69
Query: 187 QKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILP 246
+ F+E V + +V S + + +L
Sbjct: 70 DRLLDFMEPIMVSRGNH------VVDYHSSELFPERWFHM---------------VVVLH 108
Query: 247 PSLDSLKERLYKRGQDK 263
S + L ERL KR +
Sbjct: 109 TSTEVLFERLTKRQYSE 125
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 29.9 bits (67), Expect = 3.1
Identities = 12/67 (17%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 103 KPMATLSLEAQQRHELKK-----KSFKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLS 157
P+ + A + + K ++ G+++++ + GKST +N ++++
Sbjct: 134 CPVDVCLVSAAKGIGMAKVMEAINRYREGGDVYVVGCTN-VGKSTFINRIIEEATGKGNV 192
Query: 158 ISTTTRP 164
I+T+ P
Sbjct: 193 ITTSYFP 199
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 28.9 bits (64), Expect = 3.3
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 129 IFIISAPSGAGKSTLVNELLKK 150
I I S +GK+TL+ ++
Sbjct: 4 ILSIVGTSDSGKTTLITRMMPI 25
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 29.1 bits (66), Expect = 3.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 138 AGKSTLVNELLKKDHKIKLSISTTTR 163
AGKS+L+N L ++ I I+ TTR
Sbjct: 15 AGKSSLLNALAGREAAIVTDIAGTTR 40
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY
LP_3323, structural genomics, PSI-2, prote structure
initiative; 2.12A {Lactobacillus plantarum} SCOP:
c.23.10.9
Length = 232
Score = 29.4 bits (66), Expect = 3.3
Identities = 5/58 (8%), Positives = 18/58 (31%)
Query: 230 KQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYI 287
++ +P +FI + S + + +A +++ ++
Sbjct: 121 TGLQTNWPTVPKLFISAIHIGSDFGGSFSAVTNGLGYRQSDYEAAIAQMTADYGVPHL 178
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 29.5 bits (66), Expect = 3.4
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Query: 132 ISAPSGAGKSTLVN----ELLKKDHKI 154
+S P GAGKST + L ++ HK+
Sbjct: 79 LSGPPGAGKSTFIEYFGKMLTERGHKL 105
>1p9r_A General secretion pathway protein E; bacterial type II secretion
system cytoplasmic protein - GSPE, putative ATPase/ ATP
binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11
PDB: 1p9w_A*
Length = 418
Score = 29.8 bits (68), Expect = 3.4
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 92 GEPIGILRLLAKPMATLSLEA-----QQRHELKKKSFKSFGNIFIISAPSGAGKST---- 142
GE + ++RLL K L L + ++ + G I +++ P+G+GKST
Sbjct: 129 GERV-VMRLLDKNATRLDLHSLGMTAHNHDNFRRLIKRPHG-IILVTGPTGSGKSTTLYA 186
Query: 143 LVNELLKKDHKI 154
+ EL + I
Sbjct: 187 GLQELNSSERNI 198
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 29.7 bits (66), Expect = 3.6
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 136 SGAGKSTLVNELLKKDHKIKLSISTTTRP 164
+G+GKS+ +N L ++ + + T
Sbjct: 78 TGSGKSSFINTLRGIGNEEEGAAKTGVVE 106
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 3.8
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 12/56 (21%)
Query: 47 ADRATIE--------EENTLELRARDRERKLLIKIQQSIINIDKKEY-GWCKDTGE 93
ADR T E EE L+ D K ++Q KK+ W + E
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQELDAASK---VMEQEWREKAKKDLEEWNQRQSE 129
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 28.8 bits (65), Expect = 3.9
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 8/36 (22%)
Query: 116 HELKKKSFKSFGN--------IFIISAPSGAGKSTL 143
+ K+F+S + I +I +G+GKS+L
Sbjct: 4 ERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSL 39
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 28.9 bits (64), Expect = 4.3
Identities = 11/59 (18%), Positives = 23/59 (38%)
Query: 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKL 186
I I++ G GKST++ ++ + ++ + Y + D +KL
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKL 60
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 29.5 bits (67), Expect = 4.5
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 135 PSGAGKSTLVN 145
SG GKSTL+N
Sbjct: 375 MSGGGKSTLIN 385
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 29.4 bits (66), Expect = 4.6
Identities = 5/46 (10%), Positives = 18/46 (39%), Gaps = 10/46 (21%)
Query: 127 GNIFIISAPSGAGKST-----LVNELLKKDHKIKLSISTTTRPMRP 167
+ ++ G+GK+ ++ + +++ + + P R
Sbjct: 21 RQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAV-----LAPTRV 61
>2dp9_A Hypothetical protein TTHA0113; jellyroll, structural genomics,
NPPSFA, national project on structural and functional
analyses; 1.90A {Thermus thermophilus} SCOP: b.122.1.5
PDB: 1wk2_A
Length = 124
Score = 28.2 bits (62), Expect = 4.7
Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 104 PMATLSLEAQQRHELKKKSFKSFGNIFIISAPSGAGKSTLVN---ELLKKDHKIKLSIST 160
P A+L ++ ++ E++++ + G + I+S G++ LV ++
Sbjct: 16 PYASLIVDGRKVWEIRRRKTRHRGPLGIVSGGRLIGQADLVGVEGPFSVEELLAHQEKHL 75
Query: 161 TTRPMRPGEKNGREYYFTNIDNFKKLQK 188
Y ++N + +K
Sbjct: 76 AEEAFLRAYAKDEPLYAWVLENAFRYEK 103
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 28.7 bits (64), Expect = 4.9
Identities = 10/53 (18%), Positives = 16/53 (30%)
Query: 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNID 181
+ I++ GK+TL L LS M G + +
Sbjct: 7 LIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVG 59
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 29.1 bits (66), Expect = 5.0
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 24/54 (44%)
Query: 105 MATLSLEAQQRHELKKKSFKSFGNIFIISA---------------PSGAGKSTL 143
MA++ L + K++G + + PSG GKSTL
Sbjct: 1 MASVQL---------QNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTL 45
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 29.3 bits (66), Expect = 5.3
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 93 EPIGILRLLAKPMATLSLEAQQRHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDH 152
+ G A L +Q + + + +++ G GKST +
Sbjct: 173 DGAGNDDWAVPKKARKGLSEEQA-SVLDQLAGH--RLVVLTGGPGTGKSTTTKAVADLAE 229
Query: 153 KIKLSI 158
+ L +
Sbjct: 230 SLGLEV 235
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 28.9 bits (64), Expect = 5.7
Identities = 33/195 (16%), Positives = 67/195 (34%), Gaps = 24/195 (12%)
Query: 117 ELKKKSFKSFGN--------IFIISAPSGAGKSTLVNELL--------KKDHKIKLSIST 160
+ K+F+S + I +I +G+GKS+L++ +L KD K
Sbjct: 5 RVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKV 64
Query: 161 TTRPMR---PGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSN 217
R EK+G +Y F K SG+ + GN + P + I +
Sbjct: 65 GARDTYIDLIFEKDGTKYRI--TRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAF 122
Query: 218 VDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKE 277
++ L+ + I + I + + + + DK++ +++
Sbjct: 123 MEKLIPYN-IFLNAIYIRQGQIDAILESDEAREKVVREVLN--LDKFETAYKKLSELKGG 179
Query: 278 ISYANKFDYIIINNK 292
+ + K
Sbjct: 180 SGGTEELIEKVKKYK 194
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 28.6 bits (65), Expect = 6.0
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 135 PSGAGKSTLVN 145
PSG GKST+ +
Sbjct: 36 PSGGGKSTIFS 46
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 28.4 bits (63), Expect = 6.5
Identities = 26/188 (13%), Positives = 62/188 (32%), Gaps = 23/188 (12%)
Query: 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQK 188
+ + S +GK + L + ++ + P++ +Y + NF++L
Sbjct: 13 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLK------EQYAQEHGLNFQRLLD 66
Query: 189 SGKFLEWAEVHGNFYGTSFF---------PIVREIKSNVDILLEIDFQG-AKQIKKKFPN 238
+ + E +G IV I + ++ + + ++ +
Sbjct: 67 TSTYKEAFRKDMIRWGEEKRQADPGFFCRKIVEGISQPIWLVSDTRRVSDIQWFREAYGA 126
Query: 239 AIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALL 298
+ S ++R + D S + FD++I N+ + L
Sbjct: 127 VTQTVRVVALEQSRQQRGWVFTPGVDDAES------ECGLDNFGDFDWVIENHGVEQRLE 180
Query: 299 -QLKAIIN 305
QL+ +I
Sbjct: 181 EQLENLIE 188
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 28.7 bits (65), Expect = 6.5
Identities = 9/14 (64%), Positives = 13/14 (92%)
Query: 135 PSGAGKSTLVNELL 148
PSG+GKST+++ LL
Sbjct: 378 PSGSGKSTVLSLLL 391
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 28.5 bits (63), Expect = 6.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 127 GNIFIISAPSGAGKSTLVNEL 147
G + + +P GAGKS L +L
Sbjct: 30 GTVGALVSPGGAGKSMLALQL 50
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Length = 181
Score = 28.1 bits (62), Expect = 7.0
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 126 FGNIFIISAPSGAGKSTLVNELLKKDHKI 154
+I+ + GKS L L+ + H++
Sbjct: 15 DKMGVLITGEANIGKSELSLALIDRGHQL 43
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 28.3 bits (62), Expect = 7.1
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 129 IFIISAPSGAGKSTLVNELLKK 150
++ SGAGK+T+ K+
Sbjct: 34 AILLGGQSGAGKTTIHRIKQKE 55
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 28.2 bits (64), Expect = 7.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 132 ISAPSGAGKSTLVN 145
I SG+GKSTL+
Sbjct: 35 IIGASGSGKSTLLY 48
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 28.6 bits (63), Expect = 7.9
Identities = 5/37 (13%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRP 164
+ ++ G GK+ + + + + I R
Sbjct: 162 KVVLVDGVPGCGKTKEILSRVNFEEDL---ILVPGRQ 195
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate
metabolism, magnesium, metal-binding, multifunctional
enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A
1kkm_A*
Length = 205
Score = 28.1 bits (62), Expect = 8.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 126 FGNIFIISAPSGAGKSTLVNELLKKDHKI 154
+G +I+ SG GKS EL+++ H++
Sbjct: 33 YGLGVLITGDSGVGKSETALELVQRGHRL 61
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 28.5 bits (63), Expect = 8.3
Identities = 15/121 (12%), Positives = 38/121 (31%), Gaps = 10/121 (8%)
Query: 115 RHELKK-KSFKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGR 173
E +K + + ++ GKS+L+ L + I + E
Sbjct: 18 EEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCR---------ELYAE 68
Query: 174 EYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIK 233
+ T + K+LQ + + + F + K ++ + +++
Sbjct: 69 RGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELG 128
Query: 234 K 234
+
Sbjct: 129 E 129
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer,
leukemia, transferase, ATP-binding, proto- oncogene,
phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Length = 312
Score = 28.0 bits (63), Expect = 9.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 41 ILVPDPADRATIEE 54
L P P+ R ++EE
Sbjct: 267 CLAPKPSSRPSLEE 280
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 27.8 bits (62), Expect = 9.5
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 110 LEAQQRHELK-----KKSFKSFGNIFII--SAPSGAGKSTLVNELLKK 150
+ H + + F+I S + +GKST+ ++++
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.387
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,389,227
Number of extensions: 671801
Number of successful extensions: 1952
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1889
Number of HSP's successfully gapped: 189
Length of query: 672
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 572
Effective length of database: 3,909,693
Effective search space: 2236344396
Effective search space used: 2236344396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)