RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11425
(672 letters)
>d1pdaa1 c.94.1.1 (A:3-219) Porphobilinogen deaminase
(hydroxymethylbilane synthase), N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 217
Score = 184 bits (469), Expect = 5e-55
Identities = 106/206 (51%), Positives = 141/206 (68%)
Query: 374 RLAIWQAEYVRKKIIELYPWCKVEILGITTKGDKIFEKVPLKINEKGLFTKELEMAIIKG 433
LA+WQA YV+ K++ +P VE++ + T+GD I + K+ KGLF KELE+A+++
Sbjct: 12 PLALWQAHYVKDKLMASHPGLVVELVPMVTRGDVILDTPLAKVGGKGLFVKELEVALLEN 71
Query: 434 KADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTLPKNAVVGTNSLRRK 493
+AD+AVHS+KD+P+ P G L I +REDPRDAF+SN+Y SL LP ++VGT+SLRR+
Sbjct: 72 RADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQ 131
Query: 494 VLIKSFFPSLIIKSLRGNIDTRLNKLDKGEYAAIILAAAGLKRLNLQKRIRMLFSPNQIL 553
+ P LII+SLRGN+ TRL+KLD GEY AIILA AGLKRL L+ RIR P L
Sbjct: 132 CQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEISL 191
Query: 554 PAPGQGAIAIEILDNRKELMEMLIPL 579
PA GQGA+ IE + E+L L
Sbjct: 192 PAVGQGAVGIECRLDDSRTRELLAAL 217
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 150 bits (380), Expect = 1e-42
Identities = 92/189 (48%), Positives = 128/189 (67%), Gaps = 2/189 (1%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKD--HKIKLSISTTTRPMRPGEKNGREYYFTNIDNFK 184
G ++I+SAPSGAGKS+L+ LLK + ++S+S TTR RPGE +G Y+F N D FK
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFK 61
Query: 185 KLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFI 244
++ FLE AEV GN+YGTS I + + + VD+ L+ID+QGA+QI++K P+A IFI
Sbjct: 62 EMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFI 121
Query: 245 LPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLKAII 304
LPPS L RL RGQD +VI++R+ A E+S+ ++DY+I+N+ F AL LK II
Sbjct: 122 LPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDDFDTALTDLKTII 181
Query: 305 NANRCFMAR 313
A R M+R
Sbjct: 182 RAERLRMSR 190
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 126 bits (318), Expect = 3e-34
Identities = 66/183 (36%), Positives = 105/183 (57%), Gaps = 4/183 (2%)
Query: 131 IISAPSGAGKSTLVNELLKKD-HKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKS 189
++S PSGAGKSTL+ +L ++ S+S TTR RPGE++G++YYF + ++ +
Sbjct: 4 VLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAA 63
Query: 190 GKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSL 249
G F+E AE GN YGTS + N +L++D QG + IKK I IF+ PPSL
Sbjct: 64 GDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSL 123
Query: 250 DSLKERLYKRGQDKYDVISRRILSANKEISYANK---FDYIIINNKFSKALLQLKAIINA 306
D L++RL R + + +++R+ +A ++ + + FD +IIN+ KA LK ++
Sbjct: 124 DVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYATLKQALSE 183
Query: 307 NRC 309
Sbjct: 184 EIK 186
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 125 bits (314), Expect = 8e-34
Identities = 65/180 (36%), Positives = 106/180 (58%), Gaps = 2/180 (1%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKL 186
G + ++S PS GKST+V L ++ + S+S TTR RPGE +G +Y+F + F++L
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQL 61
Query: 187 QKSGKFLEWAEVHGNFYGTSFF--PIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFI 244
G+ LEWAE+HG + + P+ + V +L+E+D GA+ IKK P A+ +F+
Sbjct: 62 IDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFL 121
Query: 245 LPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLKAII 304
PPS L+ RL RG + DVI RR+ +A E++ FD +++N + A +L +++
Sbjct: 122 APPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLL 181
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 123 bits (309), Expect = 4e-33
Identities = 72/182 (39%), Positives = 112/182 (61%), Gaps = 4/182 (2%)
Query: 131 IISAPSGAGKSTLVNELLKK-DHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKS 189
+IS PSG GKSTL+ +L + S+S+TTR R GE NG++Y F ++D FK + K+
Sbjct: 5 VISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKN 64
Query: 190 GKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKF-PNAIGIFILPPS 248
+F+EWA+ GN+YG++ + + KS +L+ID QG K +K NA +FI PPS
Sbjct: 65 NEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPS 124
Query: 249 LDSLKERLYKRGQDKYDVISRRILSANKEISYA--NKFDYIIINNKFSKALLQLKAIINA 306
++ LK+RL RG + + I++R+ +A E++YA D +I+N+ KA +LK I A
Sbjct: 125 VEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDKAYKELKDFIFA 184
Query: 307 NR 308
+
Sbjct: 185 EK 186
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 118 bits (296), Expect = 2e-31
Identities = 41/179 (22%), Positives = 81/179 (45%), Gaps = 12/179 (6%)
Query: 129 IFIISAPSGAGKSTLVNELLKKD-HKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQ 187
++ G G+ + N L+ K + I TTRP + E+NG+ YYF + D +
Sbjct: 5 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDI 64
Query: 188 KSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPP 247
+ ++LE+ YGT I + + + +L+++ Q K ++ +FI P
Sbjct: 65 SNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAP 124
Query: 248 SLDSLK--ERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLKAII 304
++ + +R Q + D++ + +YA+ FD IINN+ + + L+ +
Sbjct: 125 TITPGLNEDESLQRLQKESDIL---------QRTYAHYFDLTIINNEIDETIRHLEEAV 174
>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 199
Score = 111 bits (279), Expect = 8e-29
Identities = 40/173 (23%), Positives = 78/173 (45%), Gaps = 6/173 (3%)
Query: 136 SGAGKSTLVNELLKKD-HKIKLSISTTTRPMRPGEKNGREYYFTNIDN-FKKLQKSGKFL 193
G K ++LL + K + TTRP R E +GR+Y+F + +K ++ KF+
Sbjct: 15 LGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFI 74
Query: 194 EWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDSLK 253
E + + + YGTS + + +L++ ++++ + I IFI P SL+++
Sbjct: 75 EAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVL 134
Query: 254 ERLYKRGQDKYDVISRRILSANK-EISYANKFDYIIINNKFSKALLQLKAIIN 305
E + + + A K E + F I+ + F + ++K +I
Sbjct: 135 EINKRI---TEEQARKAFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIE 184
>d1tjla1 a.2.14.1 (A:7-110) DnaK suppressor protein DksA,
alpha-hairpin domain {Escherichia coli [TaxId: 562]}
Length = 104
Score = 83.0 bits (205), Expect = 6e-20
Identities = 35/83 (42%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 3 EKDYMNEEQLAFFKFRLKKLENDLLKNIVKTTEYLR-ETILVPDPADRATIEEENTLELR 61
++YMNE QLA F+ L+ N L + +T +++ E PDP DRA EEE +LELR
Sbjct: 22 GEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELR 81
Query: 62 ARDRERKLLIKIQQSIINIDKKE 84
RDRERKL+ KI++++ ++ ++
Sbjct: 82 NRDRERKLIKKIEKTLKKVEDED 104
>d1pdaa2 d.50.2.1 (A:220-307) Porphobilinogen deaminase
(hydroxymethylbilane synthase), C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 88
Score = 74.4 bits (183), Expect = 4e-17
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 580 NHYFSEQTVKAERAVSRNFNGSCKISLAAFAMVNNFNESEINLRAIITNPNGLKIITAEV 639
NH+ + V AERA++ G+C++ + ++A + + EI LR ++ P+G +II E
Sbjct: 1 NHHETALRVTAERAMNTRLEGACQVPIGSYAELID---GEIWLRGLVGAPDGSQIIRGER 57
Query: 640 NGPIDTPETVGLYAAELLKKKGAIEIIK 667
G E +G+ AE L GA EI+
Sbjct: 58 RGAPQDAEQMGISLAEELLNNGAREILA 85
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 63.8 bits (154), Expect = 2e-12
Identities = 27/190 (14%), Positives = 53/190 (27%), Gaps = 27/190 (14%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKL 186
GNI ++S G+GKST+ L G + D+
Sbjct: 4 GNILLLSGHPGSGKSTIAEALA--------------------NLPGVPKVHFHSDDLWGY 43
Query: 187 QKSGKFLEW----AEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIK-KKFPNAIG 241
K G+ W + + + R K ++L+ + +
Sbjct: 44 IKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLH 103
Query: 242 IFILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFS--KALLQ 299
+L + ER RG D ++ +++ + +AL
Sbjct: 104 YIVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQS 163
Query: 300 LKAIINANRC 309
+ + R
Sbjct: 164 AINALQSGRF 173
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 62.0 bits (149), Expect = 1e-11
Identities = 27/165 (16%), Positives = 48/165 (29%), Gaps = 16/165 (9%)
Query: 128 NIFIISAPSGAGKSTLVNELLKK-DHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKL 186
++II+ P+G GKST L + D+ + + G + E +K +
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNI 62
Query: 187 QKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILP 246
A+ +F + K I IL
Sbjct: 63 TDLTVNFLLAQNDVVLDYIAFPDEAEALA-------------QTVQAKVDDVEIRFIILW 109
Query: 247 PSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINN 291
+ + L R R +D + + R L +E + N
Sbjct: 110 TNREELLRRDALRKKD--EQMGERCLELVEEFESKGIDERYFYNT 152
>d1tjla2 g.39.1.13 (A:111-151) DnaK suppressor protein DksA, zinc
finger domain {Escherichia coli [TaxId: 562]}
Length = 41
Score = 57.0 bits (138), Expect = 2e-11
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 85 YGWCKDTGEPIGILRLLAKPMATLSLEAQQRHELKKKSFK 124
+G+C+ G IGI RL A+P A L ++ + E+++K
Sbjct: 1 FGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMA 40
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 53.9 bits (128), Expect = 6e-09
Identities = 20/165 (12%), Positives = 52/165 (31%), Gaps = 16/165 (9%)
Query: 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQK 188
+ I++ S AGKS +V L + L+ + + + +
Sbjct: 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS------LIEAMPLKMQSAEGGIEFDA 58
Query: 189 SGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIG-----IF 243
G G +V ++ I+++ F G ++++ + +G
Sbjct: 59 DGGV-SIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWV 117
Query: 244 ILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYII 288
+ + R RG + +++ + ++D +
Sbjct: 118 GVRCDGAVAEGRETARGDRVAGMAAKQA----YVVHEGVEYDVEV 158
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 47.8 bits (112), Expect = 4e-07
Identities = 21/144 (14%), Positives = 36/144 (25%), Gaps = 10/144 (6%)
Query: 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQK 188
I + G+GKST E + K+ R + EY +T
Sbjct: 4 IILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGM 63
Query: 189 SGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPS 248
+ G+ + K++ + +
Sbjct: 64 QFDTAKSILYGGDSVKGVIISDTNLNPERRLAW--------ETFAKEYGWKVEHKVFDVP 115
Query: 249 LDSLKERLYKRGQDKY--DVISRR 270
L +R KRG DV+
Sbjct: 116 WTELVKRNSKRGTKAVPIDVLRSM 139
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 39.2 bits (90), Expect = 4e-04
Identities = 23/164 (14%), Positives = 48/164 (29%), Gaps = 16/164 (9%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKL 186
+I+++ SG+GKS + +E+ + H L P R EK + D L
Sbjct: 6 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL-DGDFLHPRRNIEKMASGEPLNDDDRKPWL 64
Query: 187 QKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILP 246
Q + + + + + L
Sbjct: 65 QALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLS---------------FIYLK 109
Query: 247 PSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIIN 290
D ++ RL R + + A++ D ++++
Sbjct: 110 GDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVD 153
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 39.2 bits (90), Expect = 6e-04
Identities = 15/175 (8%), Positives = 42/175 (24%), Gaps = 15/175 (8%)
Query: 129 IFIISAPSGAGKSTLVNEL---LKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKK 185
+ +++ G G +T L+K+ +S + ++ +
Sbjct: 3 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDP 62
Query: 186 LQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFIL 245
+ S + + + G N I ++
Sbjct: 63 ETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTP---KGYLPGLPSWVLNELNPDLIIVV 119
Query: 246 PPSLDSLKERLYKRGQDKYDVISRRILSANKEI---------SYANKFDYIIINN 291
+ D + R D+ + + ++ + I+ N
Sbjct: 120 ETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNR 174
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 36.2 bits (82), Expect = 0.005
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNID 181
++ ++ P+ AGKS+L+ + + KI TT P + E FT D
Sbjct: 3 DVGLVGYPN-AGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLAD 55
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 35.9 bits (81), Expect = 0.011
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Query: 116 HELKKKSFKSFGN--------IFIISAPSGAGKSTLVNELL 148
+ K+F+S + I +I +G+GKS+L++ +L
Sbjct: 4 ERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAIL 44
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 36.0 bits (82), Expect = 0.012
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 92 GEPIGILRLLAKPMATLSLEAQQRHELKKKSFKSFGNIFI--ISAPSGAGKSTLVNELLK 149
GE + + + + +L GN ++ GAGKST +
Sbjct: 17 GERATLAQAMTLVESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 76
Query: 150 KDHKIKLSISTTT 162
+ L ++
Sbjct: 77 LLIREGLKVAVIA 89
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 35.1 bits (79), Expect = 0.015
Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 1/116 (0%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKL 186
G I I+ P GKSTL+N+LL + I + TTR G Y +D
Sbjct: 6 GFIAIVGRP-NVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 64
Query: 187 QKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGI 242
+ + + +V + + + K + K P + +
Sbjct: 65 MEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAV 120
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 34.7 bits (78), Expect = 0.017
Identities = 27/165 (16%), Positives = 42/165 (25%)
Query: 124 KSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNF 183
K++ I GKSTL+N LL TTR G +D
Sbjct: 2 KTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTP 61
Query: 184 KKLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIF 243
+ E+ + +V + E + I +
Sbjct: 62 GLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLV 121
Query: 244 ILPPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYII 288
E K + R+LSA E A ++
Sbjct: 122 GNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLL 166
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 34.3 bits (78), Expect = 0.019
Identities = 24/143 (16%), Positives = 44/143 (30%), Gaps = 26/143 (18%)
Query: 99 RLLAKPMATLSLEAQQRHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSI 158
+ + + L + L K + + ++ GAGK+TL +L+
Sbjct: 6 QYIPDEFSMLRFGKKFAEILLKLHTEK-AIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVK 64
Query: 159 STTTRPMRPGEKNGREYYFTNIDNFKKL-------------QKSGKFLEWAEVHGNFYGT 205
S T + G+ Y ++ S +EW+E
Sbjct: 65 SPTYTLVEEYNIAGKMIYHFDLYRLADPEELEFMGIRDYFNTDSICLIEWSE-------- 116
Query: 206 SFFPIVREIKSNVDILLEIDFQG 228
+ I DIL+ ID+
Sbjct: 117 ----KGQGILPEADILVNIDYYD 135
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 35.2 bits (80), Expect = 0.020
Identities = 29/177 (16%), Positives = 55/177 (31%), Gaps = 14/177 (7%)
Query: 104 PMATLSLEAQQRHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTR 163
AT + + LK++ S I ++ G GKS+ VN ++ + +
Sbjct: 11 APATQTKLLELLGNLKQEDVNSL-TILVMGKG-GVGKSSTVNSIIGERVVSISPFQSEGP 68
Query: 164 PMRPGEKNGREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFP--IVREIKSNVDIL 221
++ + NI + L + G + A + ++ + + +
Sbjct: 69 RPVMVSRSRAGFTL-NIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRV 127
Query: 222 LEIDFQGAKQIKKKFPNAIGIFI---------LPPSLDSLKERLYKRGQDKYDVISR 269
+D AK I F I PP E KR + V+
Sbjct: 128 DNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSKRSEALLQVVRS 184
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 34.9 bits (79), Expect = 0.020
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSI 158
+ +++ GAGK+TL+ +L + H K+++
Sbjct: 5 VTLLTGFLGAGKTTLLRHILNEQHGYKIAV 34
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 34.2 bits (77), Expect = 0.023
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTT 161
+ +A SG GK+TL+ +L+ +
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 36
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 34.1 bits (77), Expect = 0.024
Identities = 31/179 (17%), Positives = 56/179 (31%), Gaps = 16/179 (8%)
Query: 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRP--MRPGEKNGREYYFTNIDNFKK 185
++ ++ PS GKSTL++ + KI TT P +GR + ++ +
Sbjct: 3 DVGLVGFPS-VGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE 61
Query: 186 LQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFIL 245
G L +R I+ I+ ID G + L
Sbjct: 62 GAHQGVGLGHQ-------------FLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQEL 108
Query: 246 PPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLKAII 304
L ER +K D+ + + + I+ + L +L +
Sbjct: 109 SEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEV 167
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 34.3 bits (77), Expect = 0.027
Identities = 23/183 (12%), Positives = 54/183 (29%), Gaps = 17/183 (9%)
Query: 122 SFKSFGNIFI-ISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYY-FTN 179
+ K+ G + + I S +GK+TL N+L + + +S+ E+ R +
Sbjct: 16 AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEE 75
Query: 180 IDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNA 239
+ LQ ++L + +++ + + I +
Sbjct: 76 WFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFL 135
Query: 240 IG----------IFILPPSLDSLKERLYKRGQDKYDVISRRILSA----NKEISYANKFD 285
+++ P + Q+ I R A + + D
Sbjct: 136 QRKEWRPFFDFVVYLDCPREIRFARENDQVKQNIQKFI-NRYWKAEDYYLETEEPIKRAD 194
Query: 286 YII 288
+
Sbjct: 195 VVF 197
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 34.5 bits (78), Expect = 0.031
Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 2/86 (2%)
Query: 92 GEPIGILRLLAKPMATLSLEAQQRHELKKKSFKSFGNIFI--ISAPSGAGKSTLVNELLK 149
G+ + R + + + +L G I+ G GKST ++ L
Sbjct: 14 GDRAALARAITLAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 73
Query: 150 KDHKIKLSISTTTRPMRPGEKNGREY 175
++ G
Sbjct: 74 LLTAAGHKVAVLAVDPSSTRTGGSIL 99
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 33.4 bits (75), Expect = 0.043
Identities = 38/204 (18%), Positives = 67/204 (32%), Gaps = 42/204 (20%)
Query: 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQ 187
NI + G GK+TL EL K +++ R + + EY +D + +
Sbjct: 6 NILLT-GTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVD 64
Query: 188 KSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPP 247
+ + V +++G FFP +F+L
Sbjct: 65 ELDNQMREGGVIVDYHGCDFFPE--------------------------RWFHIVFVLRT 98
Query: 248 SLDSLKERLYKRG------QDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLK 301
+ L ERL RG D ++L SY + + + +NK + +
Sbjct: 99 DTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNVD 158
Query: 302 AIINANRCFMARVTIEDGLKKINN 325
I+ IE +K N+
Sbjct: 159 QILKW---------IEQWIKDHNS 173
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 32.5 bits (73), Expect = 0.078
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 128 NIFIISAPSGAGKSTLVNELLKK 150
N++ + +GK+TL+ + +
Sbjct: 2 NVWQVVGYKHSGKTTLMEKWVAA 24
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 32.9 bits (73), Expect = 0.11
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 8/38 (21%)
Query: 116 HELKKKSFKSFGN--------IFIISAPSGAGKSTLVN 145
+ K+F+S + I +I +G+GKS+L++
Sbjct: 4 ERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLD 41
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 32.3 bits (72), Expect = 0.12
Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 1/114 (0%)
Query: 113 QQRHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNG 172
+R ++ G ++ SGAGK+T+ L++ T +
Sbjct: 5 NKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMA-LEEYLVCHGIPCYTLDGDNIRQGLN 63
Query: 173 REYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDF 226
+ F+ D + +++ + + G TSF + ++N + E
Sbjct: 64 KNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGAS 117
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 32.8 bits (73), Expect = 0.12
Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 3/127 (2%)
Query: 115 RHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKK---DHKIKLSISTTTRPMRPGEKN 171
R + +K I ++ GKS+++ + + + R +
Sbjct: 17 REKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDF 76
Query: 172 GREYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQ 231
E K+L K L+ + F R+ + + LLE Q +K
Sbjct: 77 LLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKD 136
Query: 232 IKKKFPN 238
+
Sbjct: 137 NVIIVLD 143
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 31.4 bits (70), Expect = 0.14
Identities = 9/87 (10%), Positives = 23/87 (26%)
Query: 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQ 187
+ + AP+G+GKST V L ++ + + + + + ++
Sbjct: 9 QVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVR 68
Query: 188 KSGKFLEWAEVHGNFYGTSFFPIVREI 214
+
Sbjct: 69 TITTGSPITYSTYGKFLADGGCSGGAY 95
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 31.8 bits (72), Expect = 0.14
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 126 FGNIFIISAPSGAGKSTLVNELLKKDHKI 154
FG +++ SG GKS +L+ K+H
Sbjct: 14 FGVGVLLTGRSGIGKSECALDLINKNHLF 42
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 31.8 bits (72), Expect = 0.15
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 126 FGNIFIISAPSGAGKSTLVNELLKKDHKI 154
+G +I+ SG GKS EL+++ H++
Sbjct: 13 YGLGVLITGDSGVGKSETALELVQRGHRL 41
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 31.6 bits (70), Expect = 0.15
Identities = 22/168 (13%), Positives = 46/168 (27%), Gaps = 14/168 (8%)
Query: 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQ 187
NIF++ P GAGKST+ +L + +L++ ++ G + + ++
Sbjct: 4 NIFLV-GPMGAGKSTIGRQLAQ-----QLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGF 57
Query: 188 KSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPP 247
+ + E+ L I
Sbjct: 58 RDREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARG-------VVVYLETTIEKQLA 110
Query: 248 SLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSK 295
K+R + + + + + Y D I + S
Sbjct: 111 RTQRDKKRPLLHVETPPREVLEALANERNPL-YEEIADVTIRTDDQSA 157
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 31.6 bits (70), Expect = 0.20
Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 6/148 (4%)
Query: 136 SGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEW 195
S GKSTL+ L K + TR + E + F
Sbjct: 9 SNVGKSTLIYRLTGKKVRRG-KRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQERI 67
Query: 196 AEVHGN-----FYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLD 250
+ + +V + K+ +I+ + +G I +F + +P +
Sbjct: 68 KDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVA 127
Query: 251 SLKERLYKRGQDKYDVISRRILSANKEI 278
K K Q+ + ++ + EI
Sbjct: 128 VNKLDKIKNVQEVINFLAEKFEVPLSEI 155
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 31.1 bits (70), Expect = 0.21
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 126 FGNIFIISAPSGAGKSTLVNELLKKDHKI 154
+G +I+ SG GKS EL+K+ H++
Sbjct: 14 YGVGVLITGDSGIGKSETALELIKRGHRL 42
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 31.5 bits (70), Expect = 0.24
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 129 IFIISAPSGAGKSTLVNELLKKDHKIK 155
I + +G+GK+TL E +
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRYLEDNY 28
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 31.5 bits (71), Expect = 0.28
Identities = 19/195 (9%), Positives = 41/195 (21%), Gaps = 28/195 (14%)
Query: 132 ISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGK 191
+ G GKST ++ PM I Q +
Sbjct: 11 LDGVYGIGKSTTGR-VMASAASGGSPTLYFPEPMAYWRTLFETDV---ISGIYDTQNRKQ 66
Query: 192 FLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDS 251
A + + F G + P+ +F
Sbjct: 67 QGNLAVDDAALITAHYQSRFTTPYLILHDHTCTLFGGNSLQRGTQPDLTLVF-------- 118
Query: 252 LKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLKAIINANRCFM 311
R V ++S + + + +
Sbjct: 119 ------DRHPVASTVCFPAARYLLGDMSMC---ALMAMVATLPR-------EPQGGNIVV 162
Query: 312 ARVTIEDGLKKINNR 326
+ +E+ ++++ R
Sbjct: 163 TTLNVEEHIRRLRTR 177
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 31.2 bits (70), Expect = 0.29
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 11/37 (29%)
Query: 120 KKSFKSF-----------GNIFIISAPSGAGKSTLVN 145
+ +K+F G F+I P+GAGK+ +
Sbjct: 8 SRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLE 44
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 31.0 bits (70), Expect = 0.33
Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 5/111 (4%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKL 186
G I + +GAGK+T ++ + K I N + +
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI----IFNGQDITNKPAHVINRMGIALVP 87
Query: 187 QKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFP 237
+ F E G IK +++ + + F K+ K+
Sbjct: 88 EGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSL-FPRLKERLKQLG 137
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 30.5 bits (67), Expect = 0.38
Identities = 15/60 (25%), Positives = 24/60 (40%)
Query: 136 SGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLEW 195
AGKS+L+N L ++ I I+ TTR + + ID + S +
Sbjct: 10 PNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERI 69
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 30.8 bits (69), Expect = 0.45
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 9/35 (25%)
Query: 120 KKSFKSF---------GNIFIISAPSGAGKSTLVN 145
+K +F + ++ P+GAGKS +
Sbjct: 8 EKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLE 42
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 30.5 bits (67), Expect = 0.45
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNF 183
+ I+ P GKSTL N+L+KK I TR F +D
Sbjct: 3 VLIVGRP-NVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTC 56
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 30.2 bits (67), Expect = 0.51
Identities = 18/166 (10%), Positives = 42/166 (25%), Gaps = 39/166 (23%)
Query: 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQK 188
+ + GAGKST + E L + ++ ++ + + + + +
Sbjct: 16 VVVAVGFPGAGKSTFIQEHLVSAGYVHVN------------RDTLGSWQRCVSSCQAALR 63
Query: 189 SGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPS 248
GK + + Q K F +
Sbjct: 64 QGKRVVIDNTN---------------------PDVPSRARYIQCAKDAGVPCRCFNFCAT 102
Query: 249 LDSLKERLYKR------GQDKYDVISRRILSANKEISYANKFDYII 288
++ + R D++ + + A F I+
Sbjct: 103 IEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTLAEGFLEIL 148
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 29.9 bits (66), Expect = 0.53
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 136 SGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGKFLE 194
GKSTL+N LL +D I I TTR + E R F +D ++ +E
Sbjct: 9 PNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVE 67
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 30.5 bits (67), Expect = 0.60
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 295 KALLQLKAIINANRCFMARVTIEDGLKKINNRFKLTLCAVYRARQLLKGHTKKIIGCD 352
+ QLK I R A T+ I+ ++ + R R+ L+GH KI
Sbjct: 9 QEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQM----RTRRTLRGHLAKIYAMH 62
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 30.1 bits (67), Expect = 0.69
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 127 GNIFIISAPSGAGKSTLVN 145
G F I PSGAGK+T +
Sbjct: 31 GERFGILGPSGAGKTTFMR 49
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 30.0 bits (66), Expect = 0.71
Identities = 23/185 (12%), Positives = 48/185 (25%), Gaps = 23/185 (12%)
Query: 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGRE-------------- 174
+I G+GK+T +N K + I L + N E
Sbjct: 11 TVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQ 70
Query: 175 -YYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIK 233
Y + + K + + R + ++ +
Sbjct: 71 SYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEE 130
Query: 234 KKFPNAIGIFILPPSLDSLKERLYKRGQDKYDVISRRILSANKE--------ISYANKFD 285
A I L S + ER+ +R + + + + L E
Sbjct: 131 SIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCK 190
Query: 286 YIIIN 290
++++
Sbjct: 191 VLVLD 195
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 29.9 bits (67), Expect = 0.87
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 127 GNIFIISAPSGAGKSTLVN 145
G + PSG GKSTL+
Sbjct: 26 GEFVVFVGPSGCGKSTLLR 44
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 30.1 bits (67), Expect = 0.87
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 108 LSLEAQQRHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSI-----STTT 162
+ L + K+ S N+ + G+GKS+ +N L ++ + + T
Sbjct: 38 IQLTNSAISDALKEIDSSVLNVAVTGET-GSGKSSFINTLRGIGNEEEGAAKTGVVEVTM 96
Query: 163 RPMRPGEKNGREYYF 177
N F
Sbjct: 97 ERHPYKHPNIPNVVF 111
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 30.1 bits (66), Expect = 0.88
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 10/39 (25%)
Query: 116 HELKKKSFKSFGN----------IFIISAPSGAGKSTLV 144
L+ +FKS+ I P+G+GKS ++
Sbjct: 4 VGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMM 42
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 29.8 bits (66), Expect = 0.89
Identities = 24/151 (15%), Positives = 57/151 (37%), Gaps = 9/151 (5%)
Query: 113 QQRHELKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNG 172
+R EL+ + G ++ S +GKSTL EL + + + +
Sbjct: 14 SERTELRNQR----GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLN 69
Query: 173 REYYFTNIDNFKKLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQI 232
++ F+ D + +++ + + + TSF R+ + L + A
Sbjct: 70 KDLGFSEADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQL----HEVATPG 125
Query: 233 KKKFPNAIGIFILPPSLDSLKERLYKRGQDK 263
++ + +++ P ++ ++R K K
Sbjct: 126 EETGLPFVEVYVDVP-VEVAEQRDPKGLYKK 155
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 29.9 bits (67), Expect = 0.91
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSI 158
G I+ PSG GK+T + + + + I
Sbjct: 29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 29.1 bits (64), Expect = 0.94
Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 3/132 (2%)
Query: 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQ 187
NI I G+GKST + L KD + + + + + E + +NF + Q
Sbjct: 2 NIVFI-GFMGSGKST-LARALAKDLDLVF-LDSDFLIEQKFNQKVSEIFEQKRENFFREQ 58
Query: 188 KSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPP 247
+ ++ T + + + K+ + I L
Sbjct: 59 EQKMADFFSSCEKACIATGGGFVNVSNLEKAGFCIYLKADFEYLKKRLDKDEISKRPLFY 118
Query: 248 SLDSLKERLYKR 259
K+ +R
Sbjct: 119 DEIKAKKLYNER 130
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 29.6 bits (65), Expect = 0.96
Identities = 11/71 (15%), Positives = 25/71 (35%)
Query: 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQ 187
I I++ G GKST++ ++ + ++ + Y + D +KL
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLS 61
Query: 188 KSGKFLEWAEV 198
+ +
Sbjct: 62 VEKQKKLQIDA 72
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 29.6 bits (66), Expect = 1.1
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 127 GNIFIISAPSGAGKSTLVN 145
G++ +I P+G+GKSTL+N
Sbjct: 30 GDVTLIIGPNGSGKSTLIN 48
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 29.1 bits (64), Expect = 1.1
Identities = 23/168 (13%), Positives = 44/168 (26%), Gaps = 13/168 (7%)
Query: 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQ 187
N+ ++ P GAGK T +++ +S T R K G K+
Sbjct: 2 NLVLMGLP-GAGKGTQAEKIVAAYGIPHIS---TGDMFRAAMKEGTPLGL----QAKQYM 53
Query: 188 KSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPP 247
G + G + + A + +++
Sbjct: 54 DRGDLVPDEVTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHI 113
Query: 248 SLDSLKERLYKRGQDKYDVISRRILSANKEIS-----YANKFDYIIIN 290
+ D ++ R+ K++ Y K IN
Sbjct: 114 DVRQDVLMERLTADDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNIN 161
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 29.1 bits (65), Expect = 1.1
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 127 GNIFIISAPSGAGKSTLVNELL 148
GN+ P+G GK+TL+ +
Sbjct: 27 GNVVNFHGPNGIGKTTLLKTIS 48
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 29.5 bits (66), Expect = 1.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 127 GNIFIISAPSGAGKSTLVNELL 148
G I + P+GAGKSTL+ +
Sbjct: 25 GEILHLVGPNGAGKSTLLARMA 46
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 29.2 bits (64), Expect = 1.2
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 129 IFIISAPSGAGKSTLVNELL 148
I I G GK+TLV +++
Sbjct: 3 IIITG-EPGVGKTTLVKKIV 21
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 29.1 bits (65), Expect = 1.3
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSI 158
G + I SG+GKSTL + + +
Sbjct: 29 GEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 29.5 bits (65), Expect = 1.3
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 127 GNIFIISAPSGAGKST-----LVNELLKKDHKI 154
+ I+ GAGK+ +V E +K+ +
Sbjct: 9 KRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRT 41
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 29.3 bits (64), Expect = 1.3
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 129 IFI-ISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFK 184
+ I I GAGK TLV +L S++T P R G+ + +
Sbjct: 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP-RYGQSVAADIAAEALHGEH 56
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus
[TaxId: 274]}
Length = 191
Score = 29.1 bits (64), Expect = 1.4
Identities = 19/183 (10%), Positives = 54/183 (29%), Gaps = 12/183 (6%)
Query: 132 ISAPSGAGKSTLVNELLKKDH------KIKLSISTTTRPMRPGEKNGREYYFTNIDNFKK 185
I+ G+GKST+ L + +
Sbjct: 8 ITGNIGSGKSTVAALLRSWGYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALA 67
Query: 186 LQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFIL 245
+ + ++ E+ L+ ++ + + + +
Sbjct: 68 RLVFSDPERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVA 127
Query: 246 PPSLDSLKERLYKRGQDKYDVISR--RILSANKEISYANKFDYIIINNKFSKALL-QLKA 302
P + ++ + + G + +V++R + ++ A +++ N + L LKA
Sbjct: 128 APLEERVRRVMARSGLSREEVLARERAQMPEEEKRKRA---TWVLENTGSLEDLERALKA 184
Query: 303 IIN 305
++
Sbjct: 185 VLA 187
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 29.0 bits (63), Expect = 1.4
Identities = 8/48 (16%), Positives = 18/48 (37%)
Query: 136 SGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNF 183
S AGKS+ +N L + + S + + + ++ +
Sbjct: 25 SNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGY 72
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 29.1 bits (65), Expect = 1.5
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 127 GNIFIISAPSGAGKSTLVNELL 148
G + I+ +G+GK++L+ +L
Sbjct: 62 GEMLAITGSTGSGKTSLLMLIL 83
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 29.0 bits (65), Expect = 1.5
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 127 GNIFIISAPSGAGKSTLVN 145
G ++ PSG GK+T +
Sbjct: 32 GEFLVLLGPSGCGKTTTLR 50
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 28.8 bits (64), Expect = 1.6
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 127 GNIFIISAPSGAGKSTLVNEL--LKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFK 184
G IF + P+GAGK+T + + L K +++ P E Y
Sbjct: 28 GEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAG-- 85
Query: 185 KLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEI 224
++ + +E+ FY +S EI+ V+ EI
Sbjct: 86 -AYRNMQGIEYLRFVAGFYASSS----SEIEEMVERATEI 120
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 28.8 bits (63), Expect = 1.7
Identities = 27/172 (15%), Positives = 47/172 (27%), Gaps = 6/172 (3%)
Query: 124 KSFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNF 183
KS N+ + G+GK T +++ + LS R + E T I N
Sbjct: 3 KSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNG 62
Query: 184 KKLQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIF 243
+ + G +F + E + + K
Sbjct: 63 EIVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEE 122
Query: 244 ILPPSLDSLKERLYKRGQDKYDVISRRILSANKEIS-----YANKFDYIIIN 290
++ L R D + I +R + N + Y II
Sbjct: 123 VMTQRLLKRG-ESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIP 173
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 28.7 bits (64), Expect = 1.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 127 GNIFIISAPSGAGKSTLVNELL 148
+I + PSG GKST+ + L
Sbjct: 28 NSIIAFAGPSGGGKSTIFSLLE 49
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 28.7 bits (64), Expect = 1.9
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 107 TLSLEAQQRHELKKKSFK-SFGNIFIISAPSGAGKSTLVNELL 148
T + ++ L+ + K G + SG+GKST+ + +
Sbjct: 20 TFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 62
>d3ezma_ b.89.1.1 (A:) Cyanovirin-N {Cyanobacterium (Nostoc
ellipsosporum) [TaxId: 45916]}
Length = 101
Score = 27.4 bits (61), Expect = 1.9
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 10/64 (15%)
Query: 577 IPLNHYFSEQTVKAERAVSRNFNGSCK-ISLAAFAMVN--------NFNESEINLRAIIT 627
I LN + NF +C+ LA + + F ++INL I
Sbjct: 34 IDLNSVIENVDGSLKWQ-PSNFIETCRNTQLAGSSELAAECKTRAQQFVSTKINLDDHIA 92
Query: 628 NPNG 631
N +G
Sbjct: 93 NIDG 96
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 28.9 bits (63), Expect = 2.0
Identities = 12/150 (8%), Positives = 40/150 (26%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKL 186
++ + G+GK+ ++++ + + + Y F+
Sbjct: 34 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPE 93
Query: 187 QKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILP 246
+ +F + +I+ + K +
Sbjct: 94 RIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTF 153
Query: 247 PSLDSLKERLYKRGQDKYDVISRRILSANK 276
+ + + +L +R Q ++ A+
Sbjct: 154 RNEYTGRGKLAERQQKLGRHMATLNKLADL 183
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 28.8 bits (64), Expect = 2.2
Identities = 14/82 (17%), Positives = 20/82 (24%), Gaps = 4/82 (4%)
Query: 127 GNIFI-ISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKK 185
G + I + G GK+T E L I P+ E I
Sbjct: 4 GVLRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDA---ICGIYG 60
Query: 186 LQKSGKFLEWAEVHGNFYGTSF 207
Q + + F
Sbjct: 61 TQTRRLNGDVSPEDAQRLTAHF 82
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 28.7 bits (64), Expect = 2.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 127 GNIFIISAPSGAGKSTLVN 145
G++ I SG+GKST +
Sbjct: 28 GDVISIIGSSGSGKSTFLR 46
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 28.6 bits (64), Expect = 2.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 127 GNIFIISAPSGAGKSTLVNELL 148
G SG GKSTL+N +
Sbjct: 44 GETVAFVGMSGGGKSTLINLIP 65
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 28.4 bits (62), Expect = 2.3
Identities = 15/116 (12%), Positives = 35/116 (30%), Gaps = 5/116 (4%)
Query: 125 SFGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFK 184
S+ II+ P +GK++L+ L + + P+ + +G +
Sbjct: 1 SYQPSIIIAGPQNSGKTSLLTLLTTDSVR---PTVVSQEPLSAADYDGSGVTLVDFPGHV 57
Query: 185 KLQK--SGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPN 238
KL+ S A+ + + + L + + +
Sbjct: 58 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID 113
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 28.1 bits (61), Expect = 2.4
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQ 187
+ I+ P GKSTL N +L K+ + + + F + + +
Sbjct: 10 KVAIVGRP-NVGKSTLFNAILNKERAL------VSPIPGTTRDPVDDEVFIDGRKYVFVD 62
Query: 188 KSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILL 222
+G + S + +V I+ D+++
Sbjct: 63 TAGLRRKSRVEPRTVEKYSNYRVVDSIE-KADVVV 96
>d1nsta_ c.37.1.5 (A:) Heparan sulfate
N-deacetylase/N-sulfotransferase domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 301
Score = 28.7 bits (63), Expect = 2.4
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 12/68 (17%)
Query: 119 KKKSFKSFGNIFIISAP-SGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYF 177
K+K+ F + II +G +T + L + + P + E F
Sbjct: 19 KEKTCDRFPKLLIIGPQKTG---TTALYLFLGMHPDLSSN--------YPSSETFEEIQF 67
Query: 178 TNIDNFKK 185
N N+ K
Sbjct: 68 FNGHNYHK 75
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 28.4 bits (62), Expect = 2.6
Identities = 4/19 (21%), Positives = 13/19 (68%)
Query: 132 ISAPSGAGKSTLVNELLKK 150
+S + +GKS++ ++++
Sbjct: 7 VSGGTASGKSSVCAKIVQL 25
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 28.1 bits (61), Expect = 2.6
Identities = 19/188 (10%), Positives = 52/188 (27%), Gaps = 12/188 (6%)
Query: 126 FGNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKK 185
F I +GKS LVN+L + + + +++
Sbjct: 6 FAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMAL 65
Query: 186 LQKSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFIL 245
+ H + + F + + + +
Sbjct: 66 GHQRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNT 125
Query: 246 PPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNK-----FSKALLQL 300
D L+ ++ + ++ + +++L K YI I + +++ +
Sbjct: 126 EWVDDGLRSLGSQKQRQQFQQLLKKLLD-------KYKVPYIEIESPSYLDRYNQVKAVI 178
Query: 301 KAIINANR 308
+ ++N
Sbjct: 179 EKVLNEEE 186
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 28.5 bits (62), Expect = 2.8
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 9/41 (21%)
Query: 116 HELKKKSFKSFGN---------IFIISAPSGAGKSTLVNEL 147
+L K FKSFG + I P+G+GKS +++ +
Sbjct: 4 KKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAI 44
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 27.8 bits (60), Expect = 2.9
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKDHK 153
G ++ +GK + L ++
Sbjct: 6 GFTIFLTGYMNSGKDAIARALQVTLNQ 32
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 28.4 bits (63), Expect = 2.9
Identities = 27/195 (13%), Positives = 47/195 (24%), Gaps = 28/195 (14%)
Query: 132 ISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQKSGK 191
I P G GK+T L + I PM G I N Q
Sbjct: 9 IDGPHGMGKTTTTQLL--VALGSRDDIVYVPEPMTYWRVLGASET---IANIYTTQHRLD 63
Query: 192 FLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPSLDS 251
E + TS QI P A+ +L P +
Sbjct: 64 QGEISAGDAAVVMTSA-----------------------QITMGMPYAVTDAVLAPHIGG 100
Query: 252 LKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLKAIINANRCFM 311
+ + R ++A A + + + + +
Sbjct: 101 EAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVL 160
Query: 312 ARVTIEDGLKKINNR 326
+ + + ++ R
Sbjct: 161 GALPEDRHIDRLAKR 175
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 27.9 bits (61), Expect = 3.0
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDN 182
+ I AP +GK T + K +S R + ++
Sbjct: 5 KVMISGAP-ASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEK 58
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 28.0 bits (61), Expect = 3.3
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 2/59 (3%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRP--MRPGEKNGREYYFTNIDNF 183
G + ++ AGKST +L++ P K Y D
Sbjct: 3 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVE 61
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 27.9 bits (62), Expect = 3.3
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 127 GNIFIISAPSGAGKSTLVNELLKKDHKIKLSI 158
G + + P+G+GKST+ L +
Sbjct: 40 GEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 27.6 bits (60), Expect = 3.4
Identities = 23/173 (13%), Positives = 50/173 (28%), Gaps = 11/173 (6%)
Query: 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQ 187
+F++ P GAGK T +++K LS R R + K+
Sbjct: 3 VVFVLGGP-GAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIV 61
Query: 188 KSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPP 247
+ + + + + + + K + K + +F
Sbjct: 62 PVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCN 121
Query: 248 SLDSLKERL-----YKRGQDKYDVISRRILSANKEIS-----YANKFDYIIIN 290
+ ++ L R D + + +RI + + Y I+
Sbjct: 122 NEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKID 174
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 28.1 bits (61), Expect = 3.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 127 GNIFIISAPSGAGKSTLVNEL 147
G + + +P GAGKS L +L
Sbjct: 29 GTVGALVSPGGAGKSMLALQL 49
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 28.1 bits (61), Expect = 3.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 127 GNIFIISAPSGAGKSTLVNEL 147
G + ++++ SG GKST V +
Sbjct: 35 GEVIMVTSGSGMGKSTFVRQQ 55
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 27.7 bits (60), Expect = 3.7
Identities = 29/243 (11%), Positives = 63/243 (25%), Gaps = 15/243 (6%)
Query: 130 FI-ISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQK 188
+ I GKST V L K + + T P+ +
Sbjct: 4 RLSIEGNIAVGKSTFVKLLTKTYPEWHV----ATEPVATWQNIQAAGNQKACTAQSLGNL 59
Query: 189 SGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPPS 248
+ T F S + + LE + Q +K
Sbjct: 60 LDMMYREPARWSYTFQTFSF------LSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRY 113
Query: 249 LDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLKAIINANR 308
+ + D I + S + + I + S + LK + R
Sbjct: 114 IFAKNLFENGSLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQ-VCLKRLYQRAR 172
Query: 309 CFMARVTIEDGLKKINNRFKLTLCAVYRARQLLKGHTKK--IIGCDNDKVTVIALREISH 366
+ + L++++ + + L ++ ++D + +E
Sbjct: 173 EEEKGIELAY-LEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQEDLM 231
Query: 367 GKI 369
++
Sbjct: 232 REV 234
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 27.6 bits (60), Expect = 4.1
Identities = 23/165 (13%), Positives = 52/165 (31%), Gaps = 6/165 (3%)
Query: 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQ 187
I ++ AP AGK T +++ K + +T +R K+G E D +
Sbjct: 2 RIILLGAP-VAGKGTQAQFIME---KYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGK 57
Query: 188 KSGKFLEWAEVHGNFYGTSFFP--IVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFIL 245
L A V ++ + + G + I+
Sbjct: 58 LVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIV 117
Query: 246 PPSLDSLKERLYKRGQDKYDVISRRILSANKEISYANKFDYIIIN 290
+ +E ++ +Y ++ ++ + + A Y ++
Sbjct: 118 DRIVKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVD 162
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine
esterase Pce (LytD), N-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 305
Score = 27.7 bits (60), Expect = 4.5
Identities = 8/66 (12%), Positives = 16/66 (24%)
Query: 420 GLFTKELEMAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRDAFISNDYISLSTL 479
G G V +K + + +K P ++D +
Sbjct: 198 GDLDNVHGAEDKYGPLIGKVDLMKFNHHHDTNKSNTKDFIKNLSPSLIVQTSDSLPWKNG 257
Query: 480 PKNAVV 485
+ V
Sbjct: 258 VDSEYV 263
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 27.6 bits (60), Expect = 4.7
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 128 NIFIISAPSGAGKSTLVNELLKKDHKIK 155
+ ++ +G+GK+TL LL K +
Sbjct: 4 TVALV-GHAGSGKTTLTEALLYKTGAKE 30
>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 27.7 bits (61), Expect = 4.7
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 5 DYMNEEQLAFFKFRLKKLENDLLKNIVKTTEYLRETILVPDPADRATIEE 54
D ++ + ++ KK + K I L ILV +P+ R TI +
Sbjct: 207 DQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPD 256
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 27.5 bits (61), Expect = 4.8
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 127 GNIFIISAPSGAGKSTLVN 145
G I+ + SGAGKSTL+
Sbjct: 31 GQIYGVIGASGAGKSTLIR 49
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 27.5 bits (61), Expect = 5.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 127 GNIFIISAPSGAGKSTLVN 145
G I PSG+GKST++N
Sbjct: 31 GEFVSIMGPSGSGKSTMLN 49
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 27.0 bits (59), Expect = 5.6
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 128 NIFIISAPSGAGKSTLVNEL---LKKDHKIKLSISTTTRPMRPGE 169
N++ + G+GK+T +L K + L ++ T+ E
Sbjct: 11 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE 55
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 27.2 bits (59), Expect = 5.6
Identities = 5/55 (9%), Positives = 15/55 (27%)
Query: 129 IFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNF 183
+ ++ GK+ + +L + + I + + F
Sbjct: 4 LIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPD 58
>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus
subtilis [TaxId: 1423]}
Length = 118
Score = 26.3 bits (57), Expect = 5.7
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 366 HGKIGVEIRLAIWQAEYVRKKIIELYPWCKVEILGITTKG 405
G I I + +K+I+ + ++ +GI + G
Sbjct: 20 DGTIIDRIEFPTKMPDETIEKVIQYFSQFSLQAIGIGSFG 59
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 27.2 bits (59), Expect = 5.9
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 10/39 (25%)
Query: 116 HELKKKSFKSFGN----------IFIISAPSGAGKSTLV 144
+L+ K FKS+GN I +G+GKS +
Sbjct: 5 EKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIG 43
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 363
Score = 27.6 bits (60), Expect = 5.9
Identities = 11/83 (13%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 117 ELKKKSFKSFGN--IFIISAPSGAGK--STLVNELLKKDHKIKLSISTTTRPMRPGEKNG 172
EL+++ + N I I G S + L + H + ++ +
Sbjct: 4 ELEREQYWPSENLKISITG---AGGFIASHIARRLKHEGHYV-IASDWKKNEHMTEDMFC 59
Query: 173 REYYFTNIDNFKKLQKSGKFLEW 195
E++ ++ + K + ++
Sbjct: 60 DEFHLVDLRVMENCLKVTEGVDH 82
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 26.9 bits (58), Expect = 6.1
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 131 IISAPSGAGKSTLVNELLK--KDHKIKLSISTTTRPMRPGEKNG 172
++ P G GK+TL+++ + K + + T + G + G
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIG 48
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 26.8 bits (58), Expect = 6.8
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRP 167
NI ++ P GAGK T + +++K +S R
Sbjct: 2 NIVLMGLP-GAGKGTQADRIVEKYGTPHISTGDMFRAAIQ 40
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 26.9 bits (58), Expect = 6.8
Identities = 19/184 (10%), Positives = 49/184 (26%), Gaps = 28/184 (15%)
Query: 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYFTNIDNFKKLQ 187
NI I G GK+++ + + + + ++ + ++
Sbjct: 7 NILIT-GTPGTGKTSMAEMIAAELDGFQ--HLEVGKLVKENHFYTEYDTELDTHIIEEKD 63
Query: 188 KSGKFLEWAEVHGNFYGTSFFPIVREIKSNVDILLEIDFQGAKQIKKKFPNAIGIFILPP 247
+ + + E+ + + +L
Sbjct: 64 EDRLLDFMEPIMVSRGNHVVDYHSSELFPERWFHM-------------------VVVLHT 104
Query: 248 SLDSLKERLYKRG------QDKYDVISRRILSANKEISYANKFDYIIINNKFSKALLQLK 301
S + L ERL KR + + + I +Y + + N+ + ++
Sbjct: 105 STEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYEDDIVLVRENDTLEQMAATVE 164
Query: 302 AIIN 305
I
Sbjct: 165 EIRE 168
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 27.2 bits (60), Expect = 6.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 132 ISAPSGAGKSTLVNELLK 149
++ SGAG ST+ + +
Sbjct: 9 VTGSSGAGTSTVKHTFDQ 26
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK
{Myxococcus xanthus [TaxId: 34]}
Length = 143
Score = 26.1 bits (57), Expect = 7.7
Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 407 KIFEKVPLKINEKGLFTKELEMAIIKGKADLAVHSLKDIPMNLPSGFILCAILKREDPRD 466
FE+ LK L A A KD+ + SG ++ +L+ E+
Sbjct: 24 SRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENAVL 83
Query: 467 AFISNDYISLSTLPKNAVVGT 487
A +T P A GT
Sbjct: 84 ANRDIMG---ATNPAQAAEGT 101
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 26.6 bits (57), Expect = 7.9
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 118 LKKKSFKSFGNIFIISAPSGAGKSTLVNELLKKDHKI 154
L KK+ K + AGK+TL++ L
Sbjct: 9 LYKKTGK-----LVFLGLDNAGKTTLLHMLKDDRLGQ 40
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 26.6 bits (57), Expect = 8.8
Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 1/50 (2%)
Query: 128 NIFIISAPSGAGKSTLVNELLKKDHKIKLSISTTTRPMRPGEKNGREYYF 177
N+ I GK+TL L + ++ G +
Sbjct: 7 NLGIFGHI-DHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFK 55
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 26.7 bits (57), Expect = 9.5
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 127 GNIFIISAPSGAGKSTL 143
G+I + GK+ +
Sbjct: 23 GSITEMFGEFRTGKTQI 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.387
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,538,550
Number of extensions: 129749
Number of successful extensions: 675
Number of sequences better than 10.0: 1
Number of HSP's gapped: 657
Number of HSP's successfully gapped: 153
Length of query: 672
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 581
Effective length of database: 1,158,166
Effective search space: 672894446
Effective search space used: 672894446
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)