Query psy11430
Match_columns 181
No_of_seqs 50 out of 52
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 18:15:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11430.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11430hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1079|consensus 100.0 4.3E-44 9.4E-49 339.6 5.0 172 5-179 1-172 (739)
2 PF11616 EZH2_WD-Binding: WD r 98.8 3.3E-09 7.2E-14 66.2 3.0 30 32-61 1-30 (30)
3 KOG0700|consensus 67.1 3 6.6E-05 39.2 1.5 29 145-175 103-131 (390)
4 PF12645 HTH_16: Helix-turn-he 63.2 7 0.00015 27.6 2.4 39 136-174 11-58 (65)
5 TIGR01675 plant-AP plant acid 61.8 1.6 3.5E-05 37.8 -1.3 19 115-133 82-100 (229)
6 TIGR01533 lipo_e_P4 5'-nucleot 61.2 1.7 3.7E-05 38.1 -1.2 19 117-135 82-100 (266)
7 TIGR01680 Veg_Stor_Prot vegeta 47.2 3.8 8.2E-05 36.8 -1.4 16 117-132 108-123 (275)
8 PF09750 DRY_EERY: Alternative 46.0 6 0.00013 31.2 -0.3 21 125-154 29-49 (122)
9 PF08381 BRX: Transcription fa 45.4 17 0.00037 26.0 1.9 27 19-45 31-57 (59)
10 PF11827 DUF3347: Protein of u 40.8 20 0.00043 29.5 2.0 36 98-134 129-168 (174)
11 PF09796 QCR10: Ubiquinol-cyto 36.6 10 0.00023 27.3 -0.2 13 119-131 40-52 (64)
12 PF15176 LRR19-TM: Leucine-ric 35.4 13 0.00029 29.2 0.1 18 128-149 77-94 (102)
13 PF14831 DUF4484: Domain of un 35.1 20 0.00044 30.3 1.2 33 128-160 136-173 (176)
14 PF11464 Rbsn: Rabenosyn Rab b 33.1 61 0.0013 21.7 3.0 28 19-47 12-39 (42)
15 PF03767 Acid_phosphat_B: HAD 28.1 13 0.00029 31.4 -1.0 18 114-131 76-93 (229)
16 smart00147 RasGEF Guanine nucl 27.5 91 0.002 25.8 3.9 50 122-181 153-205 (242)
17 PHA02086 hypothetical protein 27.5 31 0.00068 26.2 1.0 20 124-149 18-37 (88)
18 PF06887 DUF1265: Protein of u 27.4 20 0.00043 24.9 -0.1 9 141-149 1-9 (48)
19 PF07477 Glyco_hydro_67C: Glyc 27.0 25 0.00054 31.0 0.4 57 116-174 128-193 (225)
20 KOG2568|consensus 27.0 27 0.00059 34.1 0.7 39 102-146 435-473 (518)
21 PF06304 DUF1048: Protein of u 25.7 34 0.00074 26.5 0.9 19 128-150 71-89 (103)
22 PF14043 WVELL: WVELL protein 24.7 21 0.00045 26.8 -0.4 26 125-153 43-68 (75)
23 KOG4752|consensus 24.7 60 0.0013 19.8 1.7 21 7-33 4-24 (26)
24 PF10440 WIYLD: Ubiquitin-bind 24.3 80 0.0017 22.9 2.6 34 138-178 30-63 (65)
25 PF12783 Sec7_N: Guanine nucle 23.7 62 0.0013 25.4 2.1 20 135-154 146-165 (168)
26 KOG3647|consensus 23.5 1.3E+02 0.0029 27.9 4.4 43 10-54 143-185 (338)
27 PF03010 GP4: GP4; InterPro: 21.7 33 0.00071 28.1 0.2 14 149-162 42-55 (152)
28 PRK11009 aphA acid phosphatase 21.4 1.5E+02 0.0033 25.6 4.2 14 118-131 71-86 (237)
29 PF06411 HdeA: HdeA/HdeB famil 21.1 1E+02 0.0023 22.6 2.7 48 131-179 38-85 (94)
30 PF04572 Gb3_synth: Alpha 1,4- 21.1 1.3E+02 0.0028 23.5 3.4 19 138-156 12-30 (135)
31 PF12119 DUF3581: Protein of u 20.7 55 0.0012 28.9 1.3 49 114-171 88-138 (218)
No 1
>KOG1079|consensus
Probab=100.00 E-value=4.3e-44 Score=339.64 Aligned_cols=172 Identities=40% Similarity=0.645 Sum_probs=166.9
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHhhhhHHHhhhhcceecccccCCcchHHhhhheeeecCCc
Q psy11430 5 SKEWKKRVRSSYCKIRQKRRHIRAEDIKGTWNNNLKNMTQILGDEKIKRIKSKAVWVCASVSQQDTAYMKKASAIRLDST 84 (181)
Q Consensus 5 ~~~w~~rVkseY~rlrq~kr~kr~d~vk~l~~~Nr~ki~e~~~~~~~~w~~~~~~~v~~~~~~~~~~~~k~~~v~s~~~~ 84 (181)
++.|+++|||+||++||++|+++++++|++|+.|.....|.+.+++.+|+..+.+++..+.+.++....+.+...+.+.|
T Consensus 1 p~~~~p~~ks~~~k~rq~~r~~~~~~~K~~~~~~~~~~~e~i~~~~~E~k~~~~~~~~~~~~~~~~~r~k~~~~~~~~~~ 80 (739)
T KOG1079|consen 1 PPNWRPSVKSEYGKSRQRKRVREADEGKSAKSKNPADRLEKIKILNCEWKKRRLKPVRSAKEVDGDIRVKVDLDTSIFDF 80 (739)
T ss_pred CCCcCccccCccchHHHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cceecccceeeccCCCCcccceecccccceeeccccceecCCCCCccccccchhHHHHHHHhcCCcccCCCCCccccchH
Q psy11430 85 QEVTSCPINSINAVNPIPTMYTWAPIQQNFMVEDETVLHNIPYMGDEILEKDTSFIEELLKNYDGKVHGETGSAGFLDDQ 164 (181)
Q Consensus 85 ~~~q~vp~~~l~~v~~iP~m~~W~PlqqNfmvEDEtvL~nIPYMGDev~e~D~~FiEELikNYDGkvHg~~~~~~~inDe 164 (181)
+.|++|+..+|+|+.+|.||+|+|+||||||||||||||||||||+|++.|++||||||+ |||||||+|. .+|++|+
T Consensus 81 -~~~~~~i~~~n~~~~v~~~~~~~~~q~nfmv~~~~~~~~ip~~~~~v~~~k~~~ieel~~-y~~~v~~dr~-~~~~~d~ 157 (739)
T KOG1079|consen 81 -PSQKSPINELNAVAQVPIMYSWPPLQQNFMVEDETVLHNIPYMGDEVLDIKGPFIEELIK-YDGKVHGDRN-QRFMEDQ 157 (739)
T ss_pred -cccccchhhhcccccccccccCChhhhcceecccceecccccccccccccccchhhhccc-ccceeecccc-ccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999 6799999
Q ss_pred HHHHHHHHHHhhccc
Q psy11430 165 IFIELVNDLIKYQVK 179 (181)
Q Consensus 165 ifvELv~~l~~y~~~ 179 (181)
+|||||.||.||.++
T Consensus 158 v~ve~~~a~~Q~~~e 172 (739)
T KOG1079|consen 158 VFVELVVALYQYGGE 172 (739)
T ss_pred hHHHHHHHHHhcCCc
Confidence 999999999999865
No 2
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=98.81 E-value=3.3e-09 Score=66.24 Aligned_cols=30 Identities=13% Similarity=0.016 Sum_probs=21.9
Q ss_pred HHHHHhhHHHHHHHhhhhHHHhhhhcceec
Q psy11430 32 KGTWNNNLKNMTQILGDEKIKRIKSKAVWV 61 (181)
Q Consensus 32 k~l~~~Nr~ki~e~~~~~~~~w~~~~~~~v 61 (181)
|++|++||+||+|++.+||++|+++|+|||
T Consensus 1 Kalf~sNr~Ki~e~t~iLN~eWk~lRiQpv 30 (30)
T PF11616_consen 1 KALFSSNRQKIQERTDILNEEWKKLRIQPV 30 (30)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH------
T ss_pred CchhHhhHHHHHHHHHHHHHHHHHhccCCC
Confidence 689999999999999999999999999986
No 3
>KOG0700|consensus
Probab=67.07 E-value=3 Score=39.18 Aligned_cols=29 Identities=31% Similarity=0.625 Sum_probs=25.6
Q ss_pred HhcCCcccCCCCCccccchHHHHHHHHHHHh
Q psy11430 145 KNYDGKVHGETGSAGFLDDQIFIELVNDLIK 175 (181)
Q Consensus 145 kNYDGkvHg~~~~~~~inDeifvELv~~l~~ 175 (181)
==||| |||.+|+.|+++.+|.-+...|..
T Consensus 103 GIyDG--hgGp~as~~v~~~L~~~v~~~L~~ 131 (390)
T KOG0700|consen 103 GIYDG--HGGPDASRFLSDHLYPYVARELQG 131 (390)
T ss_pred EEecC--CCCccHHHHHHHHHHHHHHHHhhh
Confidence 35999 999999999999999988877766
No 4
>PF12645 HTH_16: Helix-turn-helix domain; InterPro: IPR024760 This domain appears to be a helix-turn-helix domain, suggesting a transcriptional regulatory protein. Some proteins with this domain are annotated as conjugative transposon proteins.
Probab=63.24 E-value=7 Score=27.61 Aligned_cols=39 Identities=28% Similarity=0.458 Sum_probs=28.7
Q ss_pred chhHHHHHHHhcCCccc---------CCCCCccccchHHHHHHHHHHH
Q psy11430 136 DTSFIEELLKNYDGKVH---------GETGSAGFLDDQIFIELVNDLI 174 (181)
Q Consensus 136 D~~FiEELikNYDGkvH---------g~~~~~~~inDeifvELv~~l~ 174 (181)
|..=++++++.|+|-++ -..-..+.||+++.-+|-.+|.
T Consensus 11 D~~A~~~IL~~y~~yI~kls~r~~~d~~g~~~~~vDedl~q~l~~kLi 58 (65)
T PF12645_consen 11 DPEAMEEILKHYEPYISKLSTRTLYDEYGNVYGYVDEDLKQRLEIKLI 58 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhcccccCCcCceeCHHHHHHHHHHHH
Confidence 44789999999999888 2221156788888888777664
No 5
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=61.83 E-value=1.6 Score=37.80 Aligned_cols=19 Identities=37% Similarity=0.538 Sum_probs=15.0
Q ss_pred eeccccceecCCCCCcccc
Q psy11430 115 MVEDETVLHNIPYMGDEIL 133 (181)
Q Consensus 115 mvEDEtvL~nIPYMGDev~ 133 (181)
+==|||+|.|+||++....
T Consensus 82 ~DIDET~LsN~py~~~~~~ 100 (229)
T TIGR01675 82 FDVDDTLLSNIPYYKKHGY 100 (229)
T ss_pred EccccccccCHHHHHHhcc
Confidence 4458999999999877644
No 6
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=61.21 E-value=1.7 Score=38.14 Aligned_cols=19 Identities=53% Similarity=0.816 Sum_probs=15.6
Q ss_pred ccccceecCCCCCcccccc
Q psy11430 117 EDETVLHNIPYMGDEILEK 135 (181)
Q Consensus 117 EDEtvL~nIPYMGDev~e~ 135 (181)
=|||+|.|.||+|..++..
T Consensus 82 IDeTvLdns~y~~~~~~~~ 100 (266)
T TIGR01533 82 LDETVLDNSPYQGYQVLNN 100 (266)
T ss_pred CccccccChHHHHHHhcCC
Confidence 3999999999998776544
No 7
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=47.25 E-value=3.8 Score=36.78 Aligned_cols=16 Identities=44% Similarity=0.540 Sum_probs=13.5
Q ss_pred ccccceecCCCCCccc
Q psy11430 117 EDETVLHNIPYMGDEI 132 (181)
Q Consensus 117 EDEtvL~nIPYMGDev 132 (181)
=|||+|.|+||.+..+
T Consensus 108 IDET~LsN~pY~~~~~ 123 (275)
T TIGR01680 108 IDGTALSNIPYYKKHG 123 (275)
T ss_pred CccccccCHHHHHHhc
Confidence 4899999999988653
No 8
>PF09750 DRY_EERY: Alternative splicing regulator ; InterPro: IPR019147 This entry represents the conserved N-terminal region of SWAP (suppressor-of-white-apricot protein) splice factor proteins. This region contains two highly conserved motifs, viz: DRY and EERY, which appear to be the sites for alternative splicing of exons 2 and 3 of the SWAP mRNA []. These proteins are thus thought to be involved in auto-regulation of pre-mRNA splicing. Most family members are associated with two Surp domains (IPR000061 from INTERPRO) and an arginine/serine-rich binding region towards the C terminus.
Probab=46.01 E-value=6 Score=31.17 Aligned_cols=21 Identities=33% Similarity=0.670 Sum_probs=17.6
Q ss_pred CCCCCccccccchhHHHHHHHhcCCcccCC
Q psy11430 125 IPYMGDEILEKDTSFIEELLKNYDGKVHGE 154 (181)
Q Consensus 125 IPYMGDev~e~D~~FiEELikNYDGkvHg~ 154 (181)
||.|||. |- ||.-||++.|=+
T Consensus 29 iPW~Gd~----~~-----lIDRfDvR~~Ld 49 (122)
T PF09750_consen 29 IPWQGDP----DL-----LIDRFDVRALLD 49 (122)
T ss_pred ccCCCCc----cc-----ceeHHhhhhhcc
Confidence 9999996 44 899999998765
No 9
>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members. It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.
Probab=45.35 E-value=17 Score=25.97 Aligned_cols=27 Identities=15% Similarity=0.274 Sum_probs=19.9
Q ss_pred hhhhhhhhhhhhHHHHHHhhHHHHHHH
Q psy11430 19 IRQKRRHIRAEDIKGTWNNNLKNMTQI 45 (181)
Q Consensus 19 lrq~kr~kr~d~vk~l~~~Nr~ki~e~ 45 (181)
+|=.++..-..+++..|..|+.+|.++
T Consensus 31 VRFSR~~F~e~qA~~WW~eN~~rv~e~ 57 (59)
T PF08381_consen 31 VRFSRERFSEWQAERWWEENRDRVYEK 57 (59)
T ss_pred EEEhhhhcCHHHHHHHHHHHHHHHHHh
Confidence 343344444788999999999999875
No 10
>PF11827 DUF3347: Protein of unknown function (DUF3347); InterPro: IPR021782 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 169 to 570 amino acids in length.
Probab=40.77 E-value=20 Score=29.50 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=26.2
Q ss_pred CCCCcccceecccccce----eeccccceecCCCCCccccc
Q psy11430 98 VNPIPTMYTWAPIQQNF----MVEDETVLHNIPYMGDEILE 134 (181)
Q Consensus 98 v~~iP~m~~W~PlqqNf----mvEDEtvL~nIPYMGDev~e 134 (181)
...-|.+...+|--.|- =+-++..+.| ||+|+.-|.
T Consensus 129 ~~~~~ly~~~CPMa~~~kGa~WLs~~~~I~N-PYfG~~ML~ 168 (174)
T PF11827_consen 129 GSSGTLYVQYCPMAFNNKGAYWLSDSKEIKN-PYFGDKMLT 168 (174)
T ss_pred CCCCcEEEEECCCccCCCCCeeCCCCCcCcC-CCCchhhCc
Confidence 44556777777776655 6677788888 999997554
No 11
>PF09796 QCR10: Ubiquinol-cytochrome-c reductase complex subunit (QCR10); InterPro: IPR019182 This entry represents subunit 10 of the cytochrome b-c1 complex (also known as the ubiquinol-cytochrome c reductase complex or complex III). This complex is located on the inner mitochondrial membrane and it couples electron transfer from ubiquinol to cytochrome. Subunit 10 is required for stable association of the iron-sulphur protein with the complex [].
Probab=36.61 E-value=10 Score=27.27 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=11.0
Q ss_pred ccceecCCCCCcc
Q psy11430 119 ETVLHNIPYMGDE 131 (181)
Q Consensus 119 EtvL~nIPYMGDe 131 (181)
.++|.+|||+|+-
T Consensus 40 ~dil~KIP~~G~~ 52 (64)
T PF09796_consen 40 RDILQKIPVFGSY 52 (64)
T ss_pred HHHHHhCCccccc
Confidence 4789999999974
No 12
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=35.38 E-value=13 Score=29.24 Aligned_cols=18 Identities=39% Similarity=0.530 Sum_probs=11.4
Q ss_pred CCccccccchhHHHHHHHhcCC
Q psy11430 128 MGDEILEKDTSFIEELLKNYDG 149 (181)
Q Consensus 128 MGDev~e~D~~FiEELikNYDG 149 (181)
|+|+..|+|| ||| .||=.
T Consensus 77 ~~~~~eDDDG-FIE---DnYI~ 94 (102)
T PF15176_consen 77 IPDTNEDDDG-FIE---DNYIQ 94 (102)
T ss_pred CCCCCCCCCc-ccc---ccCcC
Confidence 4455446666 999 67743
No 13
>PF14831 DUF4484: Domain of unknown function (DUF4484)
Probab=35.13 E-value=20 Score=30.26 Aligned_cols=33 Identities=33% Similarity=0.651 Sum_probs=25.2
Q ss_pred CCccc-cccchhHHHHHHHhcCC---cccCCC-CCccc
Q psy11430 128 MGDEI-LEKDTSFIEELLKNYDG---KVHGET-GSAGF 160 (181)
Q Consensus 128 MGDev-~e~D~~FiEELikNYDG---kvHg~~-~~~~~ 160 (181)
||=|+ -.+|-.|++||..-|=| .|.|-+ +|||+
T Consensus 136 MgLD~wS~~D~~FV~el~~~yf~R~a~V~~~~i~~Cgv 173 (176)
T PF14831_consen 136 MGLDVWSAQDAAFVKELVAKYFGRRAYVEGKGIECCGV 173 (176)
T ss_pred cCCCcCcHHHHHHHHHHHHHHcCCccEEccCcEEeccE
Confidence 66554 36899999999999988 677766 66653
No 14
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=33.14 E-value=61 Score=21.70 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=22.1
Q ss_pred hhhhhhhhhhhhHHHHHHhhHHHHHHHhh
Q psy11430 19 IRQKRRHIRAEDIKGTWNNNLKNMTQILG 47 (181)
Q Consensus 19 lrq~kr~kr~d~vk~l~~~Nr~ki~e~~~ 47 (181)
|.|.|...|-|+| +.+..|++-+.....
T Consensus 12 I~qAk~~~r~dEV-~~L~~NL~EL~~e~~ 39 (42)
T PF11464_consen 12 IKQAKAARRFDEV-ATLEENLRELQDEID 39 (42)
T ss_dssp HHHHHHTT-HHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHH-HHHHHHHHHHHHHHH
Confidence 7889999999999 667899988876553
No 15
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=28.11 E-value=13 Score=31.42 Aligned_cols=18 Identities=44% Similarity=0.486 Sum_probs=13.8
Q ss_pred eeeccccceecCCCCCcc
Q psy11430 114 FMVEDETVLHNIPYMGDE 131 (181)
Q Consensus 114 fmvEDEtvL~nIPYMGDe 131 (181)
++==|||+|.|+||.+..
T Consensus 76 v~DIDeTvLsn~~y~~~~ 93 (229)
T PF03767_consen 76 VFDIDETVLSNSPYYAYL 93 (229)
T ss_dssp EEESBTTTEEHHHHHHHH
T ss_pred EEECCcccccCHHHHHHH
Confidence 444599999999995544
No 16
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases.
Probab=27.46 E-value=91 Score=25.77 Aligned_cols=50 Identities=22% Similarity=0.417 Sum_probs=27.1
Q ss_pred eecCCCCCccccccchhHHHHHHHhcCCcccCCCCCccccchHH---HHHHHHHHHhhcccCC
Q psy11430 122 LHNIPYMGDEILEKDTSFIEELLKNYDGKVHGETGSAGFLDDQI---FIELVNDLIKYQVKDY 181 (181)
Q Consensus 122 L~nIPYMGDev~e~D~~FiEELikNYDGkvHg~~~~~~~inDei---fvELv~~l~~y~~~~~ 181 (181)
..=|||+|-- =.|-.|++|-.+++. + .|.||-.- +.++|..+..|+...|
T Consensus 153 ~p~IP~lg~~--l~dl~~~~~~~~~~~-------~-~~~iNf~k~~~i~~~i~~~~~~Q~~~y 205 (242)
T smart00147 153 PPCVPFLGVL--LKDLTFIDEGNPDFL-------E-NGLVNFEKRRKIAEILREIRQLQSQPY 205 (242)
T ss_pred CCCccchHHH--HHHHHHHHccCcccc-------c-CCcccHHHHHHHHHHHHHHHHHhcCCC
Confidence 4579999973 234445544333332 1 35677665 4555556666655433
No 17
>PHA02086 hypothetical protein
Probab=27.45 E-value=31 Score=26.25 Aligned_cols=20 Identities=45% Similarity=0.810 Sum_probs=13.2
Q ss_pred cCCCCCccccccchhHHHHHHHhcCC
Q psy11430 124 NIPYMGDEILEKDTSFIEELLKNYDG 149 (181)
Q Consensus 124 nIPYMGDev~e~D~~FiEELikNYDG 149 (181)
||-||||+ .--.||-+|-.|
T Consensus 18 nirfmgd~------~~adels~~v~~ 37 (88)
T PHA02086 18 NIRFMGDQ------QHADELTENVSG 37 (88)
T ss_pred hheecCch------hhHHHHHhhccH
Confidence 89999998 334456555443
No 18
>PF06887 DUF1265: Protein of unknown function (DUF1265); InterPro: IPR009676 This family represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be restricted to Caenorhabditis elegans.
Probab=27.43 E-value=20 Score=24.87 Aligned_cols=9 Identities=56% Similarity=0.763 Sum_probs=7.6
Q ss_pred HHHHHhcCC
Q psy11430 141 EELLKNYDG 149 (181)
Q Consensus 141 EELikNYDG 149 (181)
|||+|||..
T Consensus 1 EEL~kN~ED 9 (48)
T PF06887_consen 1 EELVKNHED 9 (48)
T ss_pred ChHHHhhhh
Confidence 689999876
No 19
>PF07477 Glyco_hydro_67C: Glycosyl hydrolase family 67 C-terminus; InterPro: IPR011099 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the C-terminal region of alpha-glucuronidase, which is mainly alpha-helical. It wraps around the catalytic domain (IPR011100 from INTERPRO), making additional interactions both with the N-terminal domain (IPR005154 from INTERPRO) of its parent monomer and also forming the majority of the dimer-surface with the equivalent C-terminal domain of the other monomer of the dimer [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1GQL_A 1GQI_B 1GQJ_B 1GQK_A 1H41_A 1MQR_A 1K9F_A 1K9E_A 1L8N_A 1K9D_A ....
Probab=26.99 E-value=25 Score=31.02 Aligned_cols=57 Identities=25% Similarity=0.422 Sum_probs=38.3
Q ss_pred eccccce--ecCCCCCccccccchhHHHHHHHhcCCcccCCC-------CCccccchHHHHHHHHHHH
Q psy11430 116 VEDETVL--HNIPYMGDEILEKDTSFIEELLKNYDGKVHGET-------GSAGFLDDQIFIELVNDLI 174 (181)
Q Consensus 116 vEDEtvL--~nIPYMGDev~e~D~~FiEELikNYDGkvHg~~-------~~~~~inDeifvELv~~l~ 174 (181)
|-||-.| ||+|| |..+..=.|.|+||..+|...|=--+ ..-+.||++.|-+....|.
T Consensus 128 cPeelLLwFHHvPw--~~~l~sG~Tl~q~l~~~~~~Gve~v~~~~~~W~~l~~~iD~~rf~~V~~rL~ 193 (225)
T PF07477_consen 128 CPEELLLWFHHVPW--DHKLKSGKTLWQELYDTHYEGVEEVREMQKTWDSLEGKIDEERFEEVLERLK 193 (225)
T ss_dssp S-GGGHHHH-EEET--T-B-TTS-BHHHHHHHHHHHHHHHHHHHHHHHHTTTTSS-HHHHHHHHHHHH
T ss_pred CCHHHHhhhccCCC--cCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 6666654 99999 66677777999999999987654332 3357999999988877764
No 20
>KOG2568|consensus
Probab=26.96 E-value=27 Score=34.15 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=30.1
Q ss_pred cccceecccccceeeccccceecCCCCCccccccchhHHHHHHHh
Q psy11430 102 PTMYTWAPIQQNFMVEDETVLHNIPYMGDEILEKDTSFIEELLKN 146 (181)
Q Consensus 102 P~m~~W~PlqqNfmvEDEtvL~nIPYMGDev~e~D~~FiEELikN 146 (181)
=.|+-|.|.|.|.+ +..-|-|+||..|.+...+.++-..
T Consensus 435 vI~~LWrPS~nn~r------yA~s~l~~d~~ee~~~~~~~~~~~~ 473 (518)
T KOG2568|consen 435 VIMFLWRPSQNNQR------YAFSPLSDDDEEEEEEESLDLLESL 473 (518)
T ss_pred HHHHhcCCCCCCcc------cccccccCCcchhhhhhhhhhcccc
Confidence 36799999999976 6789999999777776666655433
No 21
>PF06304 DUF1048: Protein of unknown function (DUF1048); InterPro: IPR008316 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2O3L_B 2HH6_A 2O4T_A.
Probab=25.71 E-value=34 Score=26.54 Aligned_cols=19 Identities=42% Similarity=0.945 Sum_probs=13.3
Q ss_pred CCccccccchhHHHHHHHhcCCc
Q psy11430 128 MGDEILEKDTSFIEELLKNYDGK 150 (181)
Q Consensus 128 MGDev~e~D~~FiEELikNYDGk 150 (181)
.|||+. .|.+|||++|.++
T Consensus 71 iGeD~~----~Fcdeli~~~~~~ 89 (103)
T PF06304_consen 71 IGEDVA----AFCDELIKNYKTK 89 (103)
T ss_dssp H-S-HH----HHHHHHHCCSCC-
T ss_pred hCCCHH----HHHHHHHHhcchh
Confidence 577754 6999999999875
No 22
>PF14043 WVELL: WVELL protein
Probab=24.71 E-value=21 Score=26.80 Aligned_cols=26 Identities=35% Similarity=0.786 Sum_probs=21.1
Q ss_pred CCCCCccccccchhHHHHHHHhcCCcccC
Q psy11430 125 IPYMGDEILEKDTSFIEELLKNYDGKVHG 153 (181)
Q Consensus 125 IPYMGDev~e~D~~FiEELikNYDGkvHg 153 (181)
=||.|.|+-+ .+.-..|++|-.++|-
T Consensus 43 ~~Y~G~e~te---~iV~qwI~~yG~~LH~ 68 (75)
T PF14043_consen 43 RPYQGEEMTE---RIVRQWIENYGSKLHE 68 (75)
T ss_pred CccCcHHHHH---HHHHHHHHHHHHHHHH
Confidence 4899998655 4788899999888883
No 23
>KOG4752|consensus
Probab=24.70 E-value=60 Score=19.75 Aligned_cols=21 Identities=24% Similarity=0.686 Sum_probs=14.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhHHH
Q psy11430 7 EWKKRVRSSYCKIRQKRRHIRAEDIKG 33 (181)
Q Consensus 7 ~w~~rVkseY~rlrq~kr~kr~d~vk~ 33 (181)
.|++. |+|.+||-.|+...++
T Consensus 4 kwrkk------rmrrlkrkrr~~~~rs 24 (26)
T KOG4752|consen 4 KWRKK------RMRRLKRKRRKMRARS 24 (26)
T ss_pred HHHHH------HHHHHHHHHHHHHhhc
Confidence 47654 6888888887766544
No 24
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=24.34 E-value=80 Score=22.88 Aligned_cols=34 Identities=24% Similarity=0.465 Sum_probs=27.7
Q ss_pred hHHHHHHHhcCCcccCCCCCccccchHHHHHHHHHHHhhcc
Q psy11430 138 SFIEELLKNYDGKVHGETGSAGFLDDQIFIELVNDLIKYQV 178 (181)
Q Consensus 138 ~FiEELikNYDGkvHg~~~~~~~inDeifvELv~~l~~y~~ 178 (181)
..+..|++-|||. -.+|.|+-.--|++++..-++
T Consensus 30 ~vl~~LL~lY~~n-------W~lIEed~Y~~L~dai~e~~e 63 (65)
T PF10440_consen 30 PVLKNLLKLYDGN-------WELIEEDNYRVLADAIFEEQE 63 (65)
T ss_pred HHHHHHHHHHcCC-------chhhhcccHHHHHHHHHHHhh
Confidence 5789999999863 459999999999999976554
No 25
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=23.74 E-value=62 Score=25.43 Aligned_cols=20 Identities=35% Similarity=0.708 Sum_probs=16.5
Q ss_pred cchhHHHHHHHhcCCcccCC
Q psy11430 135 KDTSFIEELLKNYDGKVHGE 154 (181)
Q Consensus 135 ~D~~FiEELikNYDGkvHg~ 154 (181)
+|+.|+-|+..|||-..|+.
T Consensus 146 ~~p~~l~~lf~NYDCd~~~~ 165 (168)
T PF12783_consen 146 KDPQFLVDLFVNYDCDLNSK 165 (168)
T ss_pred hChhHHHHHHHHcCCCCCCC
Confidence 45579999999999988754
No 26
>KOG3647|consensus
Probab=23.50 E-value=1.3e+02 Score=27.89 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=38.5
Q ss_pred HHHHHHhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHhhhhHHHhh
Q psy11430 10 KRVRSSYCKIRQKRRHIRAEDIKGTWNNNLKNMTQILGDEKIKRI 54 (181)
Q Consensus 10 ~rVkseY~rlrq~kr~kr~d~vk~l~~~Nr~ki~e~~~~~~~~w~ 54 (181)
.|=|.||-|+| |||..-+-||-.|+.-.++..|.+..+++.+.
T Consensus 143 errk~ElEr~r--kRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~ 185 (338)
T KOG3647|consen 143 ERRKAELERTR--KRLEALQSIRPAHMDEYEDCEEELQKLYQRYF 185 (338)
T ss_pred HHHHHHHHHHH--HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 45589999999 99999999999999999999999998887753
No 27
>PF03010 GP4: GP4; InterPro: IPR004257 This family contains a predicted structural envelope protein Gp4 from Equine arteritis virus (EAV).
Probab=21.69 E-value=33 Score=28.07 Aligned_cols=14 Identities=43% Similarity=0.999 Sum_probs=12.3
Q ss_pred CcccCCCCCccccc
Q psy11430 149 GKVHGETGSAGFLD 162 (181)
Q Consensus 149 GkvHg~~~~~~~in 162 (181)
|.|||-.||-.|||
T Consensus 42 ghvhgh~gcrnfin 55 (152)
T PF03010_consen 42 GHVHGHEGCRNFIN 55 (152)
T ss_pred cccccchhhhhhhc
Confidence 78999999988887
No 28
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=21.43 E-value=1.5e+02 Score=25.57 Aligned_cols=14 Identities=43% Similarity=0.824 Sum_probs=10.4
Q ss_pred cccceecCC--CCCcc
Q psy11430 118 DETVLHNIP--YMGDE 131 (181)
Q Consensus 118 DEtvL~nIP--YMGDe 131 (181)
|||+|.|-| |.|-+
T Consensus 71 DeTvldnsp~~~~~~~ 86 (237)
T PRK11009 71 DDTVLFSSPGFWRGKK 86 (237)
T ss_pred cCccccCCchheeeee
Confidence 899999888 45543
No 29
>PF06411 HdeA: HdeA/HdeB family; InterPro: IPR010486 HNS (histone-like nucleoid structuring)-dependent expression A (HdeA) protein is a stress response protein found in highly acid resistant bacteria such as Shigella flexneri and Escherichia coli, but which is lacking in mildly acid tolerant bacteria such as Salmonella []. HdeA is one of the most abundant proteins found in the periplasmic space of E. coli, where it is one of a network of proteins that confer an acid resistance phenotype essential for the pathogenesis of enteric bacteria []. HdeA is thought to act as a chaperone, functioning to prevent the aggregation of periplasmic proteins denatured under acidic conditions. The HNS protein, a chromatin-associated protein that influences the gene expression of several environmentally-induced target genes, represses the expression of HdeA. HdeB, which is encoded within the same operon, may form heterodimers with HdeA. HdeA is a single domain protein with an overall fold that is similar to the fold of the N-terminal subdomain of the GluRS anticodon-binding domain. ; PDB: 1BG8_C 1DJ8_C 2XUV_C.
Probab=21.13 E-value=1e+02 Score=22.57 Aligned_cols=48 Identities=21% Similarity=0.393 Sum_probs=37.9
Q ss_pred cccccchhHHHHHHHhcCCcccCCCCCccccchHHHHHHHHHHHhhccc
Q psy11430 131 EILEKDTSFIEELLKNYDGKVHGETGSAGFLDDQIFIELVNDLIKYQVK 179 (181)
Q Consensus 131 ev~e~D~~FiEELikNYDGkvHg~~~~~~~inDeifvELv~~l~~y~~~ 179 (181)
|-++-|+.|..-.+==++|..+|+++ +..+|=+-+...+..+.+|+.+
T Consensus 38 eFl~ld~~~~~~v~~w~~g~~~~~k~-~d~vD~~~~~~~tp~v~~~Ckk 85 (94)
T PF06411_consen 38 EFLDLDPDFMPPVVFWMEGWNKGDKG-GDYVDFDGIETVTPKVVEYCKK 85 (94)
T ss_dssp HHHTS-HHHHHHHHHHHHHCTSCSSC-GCBB-HHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHhhhccCCC-CCeeeHHHHHHhhHHHHHHHHH
Confidence 34567778888888888888999998 8899888888889999888754
No 30
>PF04572 Gb3_synth: Alpha 1,4-glycosyltransferase conserved region; InterPro: IPR007652 The glycosphingolipids (GSL) form part of eukaryotic cell membranes. They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilise UDP donors and transfer the sugar to a beta-linked acceptor []. No function has been yet assigned to this domain ; GO: 0008378 galactosyltransferase activity, 0005795 Golgi stack
Probab=21.05 E-value=1.3e+02 Score=23.54 Aligned_cols=19 Identities=42% Similarity=0.891 Sum_probs=16.8
Q ss_pred hHHHHHHHhcCCcccCCCC
Q psy11430 138 SFIEELLKNYDGKVHGETG 156 (181)
Q Consensus 138 ~FiEELikNYDGkvHg~~~ 156 (181)
.||+|+.+||||..=|.-|
T Consensus 12 ~~l~df~~~Y~~~~w~~nG 30 (135)
T PF04572_consen 12 ECLEDFVKNYDGNKWGHNG 30 (135)
T ss_pred HHHHHHHHHcCcchhcccC
Confidence 5889999999999988876
No 31
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=20.74 E-value=55 Score=28.88 Aligned_cols=49 Identities=27% Similarity=0.558 Sum_probs=30.0
Q ss_pred eeeccc--cceecCCCCCccccccchhHHHHHHHhcCCcccCCCCCccccchHHHHHHHH
Q psy11430 114 FMVEDE--TVLHNIPYMGDEILEKDTSFIEELLKNYDGKVHGETGSAGFLDDQIFIELVN 171 (181)
Q Consensus 114 fmvEDE--tvL~nIPYMGDev~e~D~~FiEELikNYDGkvHg~~~~~~~inDeifvELv~ 171 (181)
|.|.|+ .+--++---|+ .-+|++|||.||++|=- --|-- | -.|++.|.+
T Consensus 88 ~~v~D~~gK~yL~v~r~G~--~s~d~~~Ie~~ir~YVa-FSG~N----F--PhilvPLMe 138 (218)
T PF12119_consen 88 FDVCDEQGKEYLEVERSGE--VSHDPALIESFIRSYVA-FSGQN----F--PHILVPLME 138 (218)
T ss_pred EEEEcCCCCEEEEEEEcCC--cccCHHHHHHHHHHHhc-ccCCC----C--cHHhhhhHh
Confidence 555544 23334555566 37899999999999965 11211 2 467777765
Done!