Query psy11430
Match_columns 181
No_of_seqs 50 out of 52
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 18:15:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11430.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11430hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qxv_B EZH2, ENX-1, enhancer o 98.3 2.3E-07 8E-12 56.6 2.8 30 32-61 1-30 (30)
2 2z6o_A UFM1-conjugating enzyme 40.5 14 0.00048 30.2 2.2 16 6-21 31-46 (172)
3 3sja_C Golgi to ER traffic pro 39.1 47 0.0016 23.1 4.5 42 9-50 8-49 (65)
4 1yzm_A FYVE-finger-containing 30.9 41 0.0014 22.4 3.0 31 19-50 18-48 (51)
5 3sjb_C Golgi to ER traffic pro 30.1 71 0.0024 23.6 4.4 41 9-49 25-65 (93)
6 1psb_C NDR Ser/Thr kinase-like 28.8 19 0.00065 20.2 0.9 10 14-23 13-22 (26)
7 3vlc_E Golgi to ER traffic pro 28.7 57 0.0019 24.2 3.7 41 9-49 32-72 (94)
8 3phf_B Envelope glycoprotein L 27.3 29 0.00098 26.5 1.9 32 138-180 64-99 (108)
9 2ygg_A Sodium/hydrogen exchang 25.9 59 0.002 23.0 3.2 25 27-51 8-32 (70)
10 3v1a_A Computational design, M 25.8 57 0.002 21.5 2.9 27 19-46 17-43 (48)
11 3kpa_A Probable ubiquitin fold 25.2 29 0.00099 28.3 1.7 14 7-20 34-47 (168)
12 1z0j_B FYVE-finger-containing 25.1 46 0.0016 22.9 2.4 30 19-49 25-54 (59)
13 2ije_S Guanine nucleotide-rele 25.0 32 0.0011 27.8 1.9 50 122-181 151-203 (240)
14 1z0k_B FYVE-finger-containing 24.1 67 0.0023 22.6 3.2 30 19-49 36-65 (69)
15 1urq_A M-tomosyn isoform; tran 22.7 83 0.0028 21.2 3.4 23 27-49 12-34 (63)
16 3ns6_A Eukaryotic translation 22.5 42 0.0014 22.7 1.9 28 121-148 10-37 (100)
17 1hx6_A Protein P3, major capsi 20.4 33 0.0011 30.1 1.2 29 102-130 161-189 (394)
No 1
>2qxv_B EZH2, ENX-1, enhancer of zeste homolog 2; WD-repeat domain, polycomb repressive complex 2, alternative splicing, DNA-binding, nucleus; 1.82A {Mus musculus}
Probab=98.34 E-value=2.3e-07 Score=56.61 Aligned_cols=30 Identities=10% Similarity=0.035 Sum_probs=27.5
Q ss_pred HHHHHhhHHHHHHHhhhhHHHhhhhcceec
Q psy11430 32 KGTWNNNLKNMTQILGDEKIKRIKSKAVWV 61 (181)
Q Consensus 32 k~l~~~Nr~ki~e~~~~~~~~w~~~~~~~v 61 (181)
|++|++||+||.|++.++|+.|+.++++|+
T Consensus 1 K~a~~~NR~ki~e~~~~ln~~W~~~~~~P~ 30 (30)
T 2qxv_B 1 KTMFSSNRQKILERTETLNQEWKQRRIQPV 30 (30)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 689999999999999999999999998874
No 2
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=40.54 E-value=14 Score=30.19 Aligned_cols=16 Identities=19% Similarity=0.613 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhhhhh
Q psy11430 6 KEWKKRVRSSYCKIRQ 21 (181)
Q Consensus 6 ~~w~~rVkseY~rlrq 21 (181)
..|.+|++.||.+|++
T Consensus 31 ~~w~~RL~eE~k~L~k 46 (172)
T 2z6o_A 31 ELWVQRLKEEYQSLIR 46 (172)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4599999999999996
No 3
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=39.10 E-value=47 Score=23.14 Aligned_cols=42 Identities=12% Similarity=0.191 Sum_probs=33.9
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHhhhhH
Q psy11430 9 KKRVRSSYCKIRQKRRHIRAEDIKGTWNNNLKNMTQILGDEK 50 (181)
Q Consensus 9 ~~rVkseY~rlrq~kr~kr~d~vk~l~~~Nr~ki~e~~~~~~ 50 (181)
-+..+.|+..|++..+---+++=.+-|..+++++..-...+.
T Consensus 8 ~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele 49 (65)
T 3sja_C 8 YLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEIN 49 (65)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999988888888888999999988766555443
No 4
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=30.89 E-value=41 Score=22.40 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=25.9
Q ss_pred hhhhhhhhhhhhHHHHHHhhHHHHHHHhhhhH
Q psy11430 19 IRQKRRHIRAEDIKGTWNNNLKNMTQILGDEK 50 (181)
Q Consensus 19 lrq~kr~kr~d~vk~l~~~Nr~ki~e~~~~~~ 50 (181)
|.|.|+-.|-|+| +.+..|++-+.+.+..+.
T Consensus 18 I~qAk~~~r~DEV-~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 18 IRQAKAAGRMDEV-RTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHTTCHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHH-HHHHHHHHHHHHHHHHHh
Confidence 7888999999999 667999999988876653
No 5
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=30.05 E-value=71 Score=23.64 Aligned_cols=41 Identities=12% Similarity=0.189 Sum_probs=32.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHhhhh
Q psy11430 9 KKRVRSSYCKIRQKRRHIRAEDIKGTWNNNLKNMTQILGDE 49 (181)
Q Consensus 9 ~~rVkseY~rlrq~kr~kr~d~vk~l~~~Nr~ki~e~~~~~ 49 (181)
-+..+.|+.+|+...+---+++=.+-|..|++++..-...+
T Consensus 25 ~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~el 65 (93)
T 3sjb_C 25 YLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEI 65 (93)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999988888888888899999998765544444
No 6
>1psb_C NDR Ser/Thr kinase-like protein; helix-loop-helix, protein-peptide complex, metal binding protein; NMR {Bos taurus}
Probab=28.84 E-value=19 Score=20.16 Aligned_cols=10 Identities=10% Similarity=0.660 Sum_probs=7.9
Q ss_pred HHhhhhhhhh
Q psy11430 14 SSYCKIRQKR 23 (181)
Q Consensus 14 seY~rlrq~k 23 (181)
+||+||+..|
T Consensus 13 te~lRl~R~K 22 (26)
T 1psb_C 13 TEFLRLKRTR 22 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhcc
Confidence 6899998655
No 7
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=28.69 E-value=57 Score=24.23 Aligned_cols=41 Identities=12% Similarity=0.189 Sum_probs=32.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhHHHHHHhhHHHHHHHhhhh
Q psy11430 9 KKRVRSSYCKIRQKRRHIRAEDIKGTWNNNLKNMTQILGDE 49 (181)
Q Consensus 9 ~~rVkseY~rlrq~kr~kr~d~vk~l~~~Nr~ki~e~~~~~ 49 (181)
-+..+.|+..|+...+---+++=.+-|..|++++..-+..+
T Consensus 32 ~~~lk~E~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~el 72 (94)
T 3vlc_E 32 YLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEI 72 (94)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999988888888888899999998766555444
No 8
>3phf_B Envelope glycoprotein L; virus entry, membrane fusion, viral protein; 3.58A {Human herpesvirus 4}
Probab=27.34 E-value=29 Score=26.53 Aligned_cols=32 Identities=31% Similarity=0.509 Sum_probs=23.9
Q ss_pred hHHHHHHHhcCCcccCCCCCccccchHHHHHHHHHH----HhhcccC
Q psy11430 138 SFIEELLKNYDGKVHGETGSAGFLDDQIFIELVNDL----IKYQVKD 180 (181)
Q Consensus 138 ~FiEELikNYDGkvHg~~~~~~~inDeifvELv~~l----~~y~~~~ 180 (181)
+|+..+++.+...+||+ ++||+++| .||+.+|
T Consensus 64 SFllaVl~r~~~~~~~~-----------l~elLn~l~~ly~~fs~ed 99 (108)
T 3phf_B 64 SFFISILKRSSSALTGH-----------LRELLTTLETLYGSFSVED 99 (108)
T ss_dssp HHHHHHHHTTGGGCCTH-----------HHHHHHHHHHHHTTSCGGG
T ss_pred HHHHHHHHhcCCCCcHH-----------HHHHHHHHHHHHHhhhHHH
Confidence 79999999999998765 35667766 4566555
No 9
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=25.91 E-value=59 Score=23.02 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.2
Q ss_pred hhhhHHHHHHhhHHHHHHHhhhhHH
Q psy11430 27 RAEDIKGTWNNNLKNMTQILGDEKI 51 (181)
Q Consensus 27 r~d~vk~l~~~Nr~ki~e~~~~~~~ 51 (181)
+-++|+.++..|+.++++++-..|.
T Consensus 8 ~~e~ir~IL~~NLykiRqr~~SYnR 32 (70)
T 2ygg_A 8 KEEEIRKILRNNLQKTRQRLRSYNR 32 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccc
Confidence 4578999999999999999977543
No 10
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=25.79 E-value=57 Score=21.47 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=22.0
Q ss_pred hhhhhhhhhhhhHHHHHHhhHHHHHHHh
Q psy11430 19 IRQKRRHIRAEDIKGTWNNNLKNMTQIL 46 (181)
Q Consensus 19 lrq~kr~kr~d~vk~l~~~Nr~ki~e~~ 46 (181)
|+|.|.-.|-++| +++..|++-+..-.
T Consensus 17 I~qAk~~rRfdEV-~~L~~NL~EL~~E~ 43 (48)
T 3v1a_A 17 IHQAKAAGRMDEV-RTLQENLHQLMHEY 43 (48)
T ss_dssp HHHHHTTTCHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcChHHH-HHHHHHHHHHHHHH
Confidence 7889999999999 66788988776543
No 11
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=25.23 E-value=29 Score=28.33 Aligned_cols=14 Identities=21% Similarity=0.798 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhhhh
Q psy11430 7 EWKKRVRSSYCKIR 20 (181)
Q Consensus 7 ~w~~rVkseY~rlr 20 (181)
.|..|+|+||+.|=
T Consensus 34 ~w~~RlkeEy~alI 47 (168)
T 3kpa_A 34 KWTARLKEEYASLI 47 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 39999999999886
No 12
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=25.12 E-value=46 Score=22.86 Aligned_cols=30 Identities=17% Similarity=0.370 Sum_probs=25.8
Q ss_pred hhhhhhhhhhhhHHHHHHhhHHHHHHHhhhh
Q psy11430 19 IRQKRRHIRAEDIKGTWNNNLKNMTQILGDE 49 (181)
Q Consensus 19 lrq~kr~kr~d~vk~l~~~Nr~ki~e~~~~~ 49 (181)
|+|.|+-.|-|+| +.+..|++-+.+.+..+
T Consensus 25 I~qAk~~~R~DEV-~~Le~NLrEL~~ei~~~ 54 (59)
T 1z0j_B 25 IFDAKQCGRLDEV-EVLTENLRELKHTLAKQ 54 (59)
T ss_dssp HHHHHHSSCHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHH-HHHHHHHHHHHHHHHHH
Confidence 7888999999999 77899999998887655
No 13
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus}
Probab=25.02 E-value=32 Score=27.83 Aligned_cols=50 Identities=26% Similarity=0.485 Sum_probs=29.7
Q ss_pred eecCCCCCccccccchhHHHHHHHhcCCcccCCCCCccccchHH---HHHHHHHHHhhcccCC
Q psy11430 122 LHNIPYMGDEILEKDTSFIEELLKNYDGKVHGETGSAGFLDDQI---FIELVNDLIKYQVKDY 181 (181)
Q Consensus 122 L~nIPYMGDev~e~D~~FiEELikNYDGkvHg~~~~~~~inDei---fvELv~~l~~y~~~~~ 181 (181)
.-=|||+|- .=+|-+|++|=..+|- + .|.||=+- +.+.|..+.+|+...|
T Consensus 151 ~p~IPflg~--~L~DL~~i~egnp~~~-------~-~~lINf~K~~~~~~ii~~i~~~q~~~y 203 (240)
T 2ije_S 151 PPCVPYLGM--YLTDLVFIEEGTPNYT-------E-DGLVNFSKMRMISHIIREIRQFQQTTY 203 (240)
T ss_dssp SSCBCCHHH--HHHHHHHHHHHSCSBC-------T-TSCBCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCccCccch--HHHHHHHHHhcCCCCC-------C-CCcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 356999994 4667777776444332 2 34666543 4456666666665443
No 14
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=24.06 E-value=67 Score=22.60 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=25.4
Q ss_pred hhhhhhhhhhhhHHHHHHhhHHHHHHHhhhh
Q psy11430 19 IRQKRRHIRAEDIKGTWNNNLKNMTQILGDE 49 (181)
Q Consensus 19 lrq~kr~kr~d~vk~l~~~Nr~ki~e~~~~~ 49 (181)
|+|.|.-.|-|+| +.+..|++-+.+.+..+
T Consensus 36 I~qAk~~~r~DEV-~tLe~NLrEL~~ei~~~ 65 (69)
T 1z0k_B 36 IRQAKAAGRMDEV-RTLQENLRQLQDEYDQQ 65 (69)
T ss_dssp HHHHHHTTCHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHH-HHHHHHHHHHHHHHHHH
Confidence 7899999999999 66789999988877655
No 15
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=22.72 E-value=83 Score=21.22 Aligned_cols=23 Identities=9% Similarity=-0.015 Sum_probs=19.3
Q ss_pred hhhhHHHHHHhhHHHHHHHhhhh
Q psy11430 27 RAEDIKGTWNNNLKNMTQILGDE 49 (181)
Q Consensus 27 r~d~vk~l~~~Nr~ki~e~~~~~ 49 (181)
..++|+..+..|++++.||-+.|
T Consensus 12 qv~ev~~iM~~ni~kvlERGekL 34 (63)
T 1urq_A 12 AASGVVGELARARLALDERGQKL 34 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999998876544
No 16
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=22.48 E-value=42 Score=22.73 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=22.1
Q ss_pred ceecCCCCCccccccchhHHHHHHHhcC
Q psy11430 121 VLHNIPYMGDEILEKDTSFIEELLKNYD 148 (181)
Q Consensus 121 vL~nIPYMGDev~e~D~~FiEELikNYD 148 (181)
.+.||||.+++-.+-...-|.++...|-
T Consensus 10 fV~nLp~v~~~~~~~~~~~L~~~F~~~G 37 (100)
T 3ns6_A 10 VVNGAPVIPSAKVPVLKKALTSLFSKAG 37 (100)
T ss_dssp EEESCCCCBGGGHHHHHHHHHHHHHTTS
T ss_pred EEeCCCcCChHHHHHHHHHHHHHHHhcC
Confidence 4689999998766666677888888884
No 17
>1hx6_A Protein P3, major capsid protein; bacteriophage PRD1, coat protein, jelly roll, viral beta barrel, viral protein; 1.65A {Enterobacteria phage PRD1} SCOP: b.121.2.1 b.121.2.1 PDB: 1gw7_A 1gw8_A 1hb5_A 1hb7_A 1hb9_A 1hqn_A 1cjd_A 1w8x_A
Probab=20.41 E-value=33 Score=30.08 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=19.0
Q ss_pred cccceecccccceeeccccceecCCCCCc
Q psy11430 102 PTMYTWAPIQQNFMVEDETVLHNIPYMGD 130 (181)
Q Consensus 102 P~m~~W~PlqqNfmvEDEtvL~nIPYMGD 130 (181)
-+||+|.|+.-.=.----.||.|.|---.
T Consensus 161 ltmyywvplaysetdltgavlanvpqskq 189 (394)
T 1hx6_A 161 LTMYYWVPLAYSETDLTGAVLANVPQSKQ 189 (394)
T ss_dssp EEEEEEEESSSSSSCCTTCEECSSCCSCC
T ss_pred eEEEEEEEeeecccccchHHhhcCcchhh
Confidence 47999999974322222348899997543
Done!