RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11430
(181 letters)
>gnl|CDD|235508 PRK05568, PRK05568, flavodoxin; Provisional.
Length = 142
Score = 28.6 bits (64), Expect = 0.97
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 126 PYMGDEILEKDT--SFIEELLKNYDGKVHGETGSAGFLDDQ 164
P MGDE+LE+ F+E + GK GS G+ D +
Sbjct: 57 PAMGDEVLEEGEMEPFVESISSLVKGKKLVLFGSYGWGDGE 97
>gnl|CDD|233259 TIGR01070, mutS1, DNA mismatch repair protein MutS. [DNA
metabolism, DNA replication, recombination, and repair].
Length = 840
Score = 29.0 bits (65), Expect = 1.4
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 122 LHNIP--YMGDEILEKDTSFIEELLKNYDGKVHGETGSAGFLDDQIFIELVNDLIKY 176
LH +P Y + L+ +I LK + KV G L+ ++F EL L KY
Sbjct: 467 LHLVPAHYRRRQTLKNAERYITPELKEKEDKVLEAEGKILALEKELFEELRELLKKY 523
>gnl|CDD|239000 cd02045, antithrombin-III_like, Antithrombin is a serine proteinase
inhibitor (serpin) which controls the process of
coagulation. It is the most important anticoagulant
molecule in mammalian circulation systems, controlled by
its interaction with the co-factor, heparin, which
accelerates its interaction with target proteases, such
as thrombin and factor Xa. This subgroup corresponds to
clade C of the serpin superfamily.
Length = 381
Score = 28.7 bits (64), Expect = 2.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 100 PIPTMYTWAPIQQNFMVEDETVLHNIPYMGDEI 132
P+P MY + + + ED+ + +PY GD+I
Sbjct: 202 PVPMMYQESKFRYAKIPEDKVQVLELPYKGDDI 234
>gnl|CDD|200463 cd11324, AmyAc_Amylosucrase, Alpha amylase catalytic domain found
in Amylosucrase. Amylosucrase is a glucosyltransferase
that catalyzes the transfer of a D-glucopyranosyl moiety
from sucrose onto an acceptor molecule. When the
acceptor is another saccharide, only alpha-1,4 linkages
are produced. Unlike most amylopolysaccharide synthases,
it does not require any alpha-D-glucosyl nucleoside
diphosphate substrate. In the presence of glycogen it
catalyzes the transfer of a D-glucose moiety onto a
glycogen branch, but in its absence, it hydrolyzes
sucrose and synthesizes polymers, smaller
maltosaccharides, and sucrose isoforms. The
Alpha-amylase family comprises the largest family of
glycoside hydrolases (GH), with the majority of enzymes
acting on starch, glycogen, and related oligo- and
polysaccharides. These proteins catalyze the
transformation of alpha-1,4 and alpha-1,6 glucosidic
linkages with retention of the anomeric center. The
protein is described as having 3 domains: A, B, C. A is
a (beta/alpha) 8-barrel; B is a loop between the beta 3
strand and alpha 3 helix of A; C is the C-terminal
extension characterized by a Greek key. The majority of
the enzymes have an active site cleft found between
domains A and B where a triad of catalytic residues
(Asp, Glu and Asp) performs catalysis. Other members of
this family have lost the catalytic activity as in the
case of the human 4F2hc, or only have 2 residues that
serve as the catalytic nucleophile and the acid/base,
such as Thermus A4 beta-galactosidase with 2 Glu
residues (GH42) and human alpha-galactosidase with 2 Asp
residues (GH31). The family members are quite extensive
and include: alpha amylase, maltosyltransferase,
cyclodextrin glycotransferase, maltogenic amylase,
neopullulanase, isoamylase, 1,4-alpha-D-glucan
maltotetrahydrolase, 4-alpha-glucotransferase,
oligo-1,6-glucosidase, amylosucrase, sucrose
phosphorylase, and amylomaltase.
Length = 536
Score = 28.3 bits (64), Expect = 2.5
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 125 IP--YMGDEI-LEKDTSFIEELLKNYDGK-VH 152
IP YMGDE+ L D S++++ K D + VH
Sbjct: 466 IPLIYMGDELGLLNDYSYLDDPAKADDSRWVH 497
>gnl|CDD|178293 PLN02690, PLN02690, Agmatine deiminase.
Length = 374
Score = 27.8 bits (62), Expect = 3.2
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 34 TWNNNLKNMTQILGDEKIKRIKSKAVWVCASVSQQDTAYMKKASAIRLDSTQEVTSCPIN 93
W +N K Q K + V VCAS +Q + A + S V +N
Sbjct: 32 NWRDNAKPAQQQFAAVAKAISKFEPVTVCASPAQWENAR----EQLPGVSNVRVVEMSMN 87
>gnl|CDD|226805 COG4365, COG4365, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 537
Score = 27.1 bits (60), Expect = 7.0
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
Query: 107 WAPIQQNFMVEDETVLHNIPYMGDEILEKDTSFIEELLKNY-----DGKVHG-ETGSAGF 160
WA +++ F + +P +G L IE+LL Y V G E F
Sbjct: 356 WAELKRVFKTCGRKMPPVMPRLGITYLN---DRIEKLLAEYNISLEKAIVDGVEGEREKF 412
Query: 161 LDDQI---FIELVNDLIKYQ 177
+ +Q FIE+V I+
Sbjct: 413 IREQAPHQFIEVVEGAIEQI 432
>gnl|CDD|184906 PRK14942, PRK14942, DNA polymerase III subunit beta; Provisional.
Length = 373
Score = 26.8 bits (59), Expect = 7.4
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 140 IEELLKNYDGKVHGETGSAGFLDDQIF-----IELVNDLIKYQVKDY 181
+ E+ K ETG+ G +D+QI+ IEL+ LI+ +Y
Sbjct: 208 VREISKMIATS---ETGNIGLIDEQIYVSANNIELLCKLIEGNFPNY 251
>gnl|CDD|184818 PRK14779, PRK14779, lipoprotein signal peptidase; Provisional.
Length = 159
Score = 26.2 bits (58), Expect = 9.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 156 GSAGFLDDQIFIELVNDLIKYQVKDY 181
G+ G L D+ F+ V D I + D+
Sbjct: 101 GALGNLYDRFFLGQVRDFIDIYIGDF 126
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.387
Gapped
Lambda K H
0.267 0.0720 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,077,534
Number of extensions: 811927
Number of successful extensions: 717
Number of sequences better than 10.0: 1
Number of HSP's gapped: 717
Number of HSP's successfully gapped: 17
Length of query: 181
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 90
Effective length of database: 6,901,388
Effective search space: 621124920
Effective search space used: 621124920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)