RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11430
(181 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.033
Identities = 29/159 (18%), Positives = 46/159 (28%), Gaps = 64/159 (40%)
Query: 37 NNLKNMTQILGDEKIKRIKSKAVWVCASVSQQDTAYMKKASAIRLDSTQEVTSCPINSIN 96
NN N+T G EK KRI+ Y A+ ++ +
Sbjct: 1667 NNPVNLTIHFGGEKGKRIREN--------------YS----AMIFETIVDGKLKTEKIFK 1708
Query: 97 AVNPIPTMYTWAPIQQNFMVEDETVLHNIPYMGDEILEKDTSF-----------IEELLK 145
+N T YT+ ++ +L T F E LK
Sbjct: 1709 EINEHSTSYTFRS--------EKGLLS------------ATQFTQPALTLMEKAAFEDLK 1748
Query: 146 NYDGKV--------H--GE----TGSAGFLDDQIFIELV 170
+ G + H GE A + + +E+V
Sbjct: 1749 S-KGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV 1786
Score = 30.4 bits (68), Expect = 0.34
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 31 IKGTWNNNLKNMTQILGDEKIKRIKSKAVWVCASVSQ 67
G L +T +L K+++I + S+ +
Sbjct: 1855 AAGD-LRALDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
Score = 27.7 bits (61), Expect = 2.9
Identities = 22/121 (18%), Positives = 34/121 (28%), Gaps = 47/121 (38%)
Query: 57 KAVWVCASVSQQDTAYMKKASAIRLDS-TQEVTSCPINSINAVNPIPTMYTWAPIQQNFM 115
+ VW + A D+ ++ I I NP+
Sbjct: 1643 QDVW--------NRA----------DNHFKDTYGFSILDIVINNPV-------------- 1670
Query: 116 VEDETVLHNIPYMGDEILEKDTSFIEELLKNYDGKVHGETGSAGFLDDQIFIELVNDLIK 175
+H G I E ++ I E DGK+ E +IF E+
Sbjct: 1671 ---NLTIHFGGEKGKRIRENYSAMIFE--TIVDGKLKTE---------KIFKEINEHSTS 1716
Query: 176 Y 176
Y
Sbjct: 1717 Y 1717
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.41
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 14/35 (40%)
Query: 67 QQDTAYMKK-ASAIRL---DSTQEVTSCPINSINA 97
Q +KK ++++L DS P +I A
Sbjct: 20 QA----LKKLQASLKLYADDSA------PALAIKA 44
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 1.3
Identities = 28/198 (14%), Positives = 62/198 (31%), Gaps = 52/198 (26%)
Query: 13 RSSY--CKIRQKRRHIRAEDIKGTWNNNLKNMTQILGDEKIKRIKSKAVWVCASVSQQDT 70
R + + HI + W + +K+ ++ ++ K S+ ++
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY----------SLVEKQ- 420
Query: 71 AYMKKASAIRLDSTQEVTSCPINS--------INAVNPIPTMYTWAPIQQNFMVEDETVL 122
K S I + S + + ++ N T + I D+
Sbjct: 421 ---PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY---LDQYFY 474
Query: 123 HNIPY--MGDEILEK---------DTSFIEELLKNYDGKVHGETGSAG------------ 159
+I + E E+ D F+E+ ++ +D +GS
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR-HDSTAWNASGSILNTLQQLKFYKPY 533
Query: 160 -FLDDQIFIELVNDLIKY 176
+D + LVN ++ +
Sbjct: 534 ICDNDPKYERLVNAILDF 551
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison
hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB:
3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Length = 326
Score = 27.5 bits (62), Expect = 2.3
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 12/56 (21%)
Query: 116 VEDETVLHNIP--YMGDEILEKDTSFIEELLKNYDGKV--HG-----ETGSAGFLD 162
V+ E V+ NI M D + I DG V HG ET A FLD
Sbjct: 48 VKGEQVV-NIGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTDTMEET--AYFLD 100
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A
{Campylobacter jejuni subsp}
Length = 418
Score = 26.9 bits (60), Expect = 3.8
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 123 HNIPYMGDEILEKDTSFIEELLKNYDGKVHGETGSAGFLDDQIFIELVNDLIK 175
H+I +EK + + Y +V+ E G A + V D+I+
Sbjct: 239 HHITKK-GYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIE 290
>2fok_A R.FOKI, FOKI restriction endonuclease; nucleic acid recognition,
DNA-binding protein, type IIS restriction endonuclease;
2.30A {Planomicrobium okeanokoites} SCOP: a.4.5.12
a.4.5.12 a.4.5.12 c.52.1.12 PDB: 1fok_A*
Length = 579
Score = 26.2 bits (57), Expect = 6.7
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Query: 4 VSKEWKKRVRSSYCKIRQKRRHIRAEDIKGTWNNNLKNMTQILGDEKIKRIKSKAVWVCA 63
V + K+ + + K K A I G LK + + G K R+ + W
Sbjct: 240 VKQGKKEFIIPTLGKPDNKEFISHAFKITG---EGLKVLRRAKGSTKFTRVPKRVYWEML 296
Query: 64 SVSQQDTAYMKKASAIRLDSTQEVTSCPINSINA 97
+ + D Y++ A+ L+ + S I I
Sbjct: 297 ATNLTDKEYVRTRRALILEILIKAGSLKIEQIQD 330
>2c4i_A Avidin; biotin, glycoprotein, signalor; HET: BTN; 1.95A {Gallus
gallus}
Length = 271
Score = 25.9 bits (56), Expect = 8.8
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 13 RSSYCKIRQKRRHIRAEDIKGTWNNNL 39
R K R + G W N+L
Sbjct: 64 RLRTQKEGGSGGSARKCSLTGKWTNDL 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.387
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,756,619
Number of extensions: 150473
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 24
Length of query: 181
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 93
Effective length of database: 4,244,745
Effective search space: 394761285
Effective search space used: 394761285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)