RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11430
         (181 letters)



>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA
           {Escherichia coli [TaxId: 562]}
          Length = 209

 Score = 25.3 bits (55), Expect = 4.2
 Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 4/59 (6%)

Query: 118 DETVLHNIPYMGDEILEKDTSFIEELLKNYDGKVHGETGSAGFLDDQIFIELVNDLIKY 176
           D+TVL + P            F  E        V  E  + G+ +  I  E+   LI  
Sbjct: 43  DDTVLFSSPGFWRGKKT----FSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDM 97


>d1xkpa1 a.243.1.3 (A:73-269) Outer membrane protein yopN (LcrE)
          {Yersinia pestis [TaxId: 632]}
          Length = 197

 Score = 24.8 bits (54), Expect = 6.7
 Identities = 5/33 (15%), Positives = 13/33 (39%)

Query: 25 HIRAEDIKGTWNNNLKNMTQILGDEKIKRIKSK 57
            R  D++   N  L  + ++   + +  + S 
Sbjct: 5  QARVSDVEEQVNQYLSKVPELEQKQNVSELLSL 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0722    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 695,950
Number of extensions: 31049
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 7
Length of query: 181
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 101
Effective length of database: 1,309,196
Effective search space: 132228796
Effective search space used: 132228796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.1 bits)