Query psy11431
Match_columns 590
No_of_seqs 131 out of 658
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 18:16:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11431.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11431hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1278|consensus 100.0 7E-184 2E-188 1447.2 47.1 548 1-586 64-618 (628)
2 PF02990 EMP70: Endomembrane p 100.0 2E-148 4E-153 1232.5 39.9 509 1-554 8-521 (521)
3 KOG1277|consensus 100.0 7E-148 2E-152 1145.7 37.3 512 1-585 62-582 (593)
4 PF12670 DUF3792: Protein of u 85.4 3.4 7.3E-05 37.3 7.3 77 298-378 5-81 (116)
5 PF11368 DUF3169: Protein of u 83.8 12 0.00027 38.1 11.4 38 370-414 200-237 (248)
6 PF05297 Herpes_LMP1: Herpesvi 68.5 1.6 3.5E-05 45.1 0.0 34 352-385 126-159 (381)
7 PF02990 EMP70: Endomembrane p 62.9 93 0.002 35.4 12.7 121 457-584 334-479 (521)
8 KOG2568|consensus 60.8 3.1 6.7E-05 46.7 0.3 147 291-484 265-419 (518)
9 KOG1278|consensus 57.2 3.6E+02 0.0077 31.1 17.3 195 277-511 391-615 (628)
10 PF07331 TctB: Tripartite tric 52.1 35 0.00075 31.1 5.8 24 358-382 109-132 (141)
11 PF13347 MFS_2: MFS/sugar tran 51.0 76 0.0017 34.3 9.2 81 276-362 209-291 (428)
12 TIGR02973 nitrate_rd_NapE peri 50.4 13 0.00029 27.5 2.1 35 360-394 2-36 (42)
13 PF06570 DUF1129: Protein of u 50.0 54 0.0012 32.5 7.1 45 312-359 91-135 (206)
14 PRK11339 abgT putative aminobe 49.6 43 0.00093 38.0 6.9 51 304-354 265-326 (508)
15 PF06609 TRI12: Fungal trichot 44.4 2.6E+02 0.0057 32.5 12.4 63 302-373 143-205 (599)
16 TIGR02972 TMAO_torE trimethyla 43.3 15 0.00034 27.9 1.5 36 359-394 6-41 (47)
17 PF08055 Trp_leader1: Tryptoph 43.2 10 0.00022 22.5 0.4 8 518-525 6-13 (18)
18 PF06796 NapE: Periplasmic nit 43.2 16 0.00035 28.8 1.7 35 359-393 14-48 (56)
19 TIGR00881 2A0104 phosphoglycer 38.2 1.3E+02 0.0028 30.8 8.2 23 336-358 257-279 (379)
20 COG5393 Predicted membrane pro 37.4 43 0.00094 30.4 3.7 44 306-349 48-102 (131)
21 KOG0569|consensus 37.4 31 0.00067 38.9 3.5 216 260-514 222-454 (485)
22 PF03806 ABG_transport: AbgT p 34.8 2.8E+02 0.006 31.6 10.3 88 335-425 302-402 (502)
23 COG2271 UhpC Sugar phosphate p 33.9 5.9E+02 0.013 28.6 12.4 161 239-425 186-372 (448)
24 TIGR00895 2A0115 benzoate tran 33.5 59 0.0013 33.7 4.8 27 335-361 289-315 (398)
25 KOG2290|consensus 28.7 4.4E+02 0.0096 29.6 10.2 11 303-313 517-527 (652)
26 TIGR00822 EII-Sor PTS system, 28.2 37 0.00079 35.3 2.0 90 414-520 152-246 (265)
27 PF07172 GRP: Glycine rich pro 28.0 94 0.002 27.2 4.2 6 258-263 23-28 (95)
28 PF09605 Trep_Strep: Hypotheti 27.3 1.5E+02 0.0033 28.9 6.1 26 407-432 158-185 (186)
29 PF12271 Chs3p: Chitin synthas 26.5 6.8E+02 0.015 26.5 10.9 121 304-425 118-246 (293)
30 TIGR00893 2A0114 d-galactonate 26.2 1.4E+02 0.0031 30.5 6.1 24 339-362 259-282 (399)
31 PF09788 Tmemb_55A: Transmembr 25.5 91 0.002 32.1 4.2 37 508-546 217-253 (256)
32 MTH00033 CYTB cytochrome b; Pr 25.2 1.5E+02 0.0032 32.6 6.0 98 484-584 26-142 (383)
33 PRK00293 dipZ thiol:disulfide 24.1 2.1E+02 0.0045 33.1 7.3 28 398-425 323-350 (571)
34 TIGR00901 2A0125 AmpG-related 23.2 2.9E+02 0.0062 28.6 7.8 175 241-430 159-340 (356)
35 MTH00119 CYTB cytochrome b; Pr 23.1 2E+02 0.0043 31.4 6.6 98 484-584 30-146 (380)
36 PF06570 DUF1129: Protein of u 22.4 86 0.0019 31.0 3.3 29 516-544 140-169 (206)
37 cd00284 Cytochrome_b_N Cytochr 22.2 1.1E+02 0.0023 30.4 4.0 98 484-584 21-139 (200)
38 PF12823 DUF3817: Domain of un 22.0 18 0.0004 31.3 -1.3 26 448-473 63-88 (92)
39 TIGR00523 eIF-1A eukaryotic/ar 20.9 70 0.0015 28.2 2.1 38 20-65 57-94 (99)
40 MTH00145 CYTB cytochrome b; Pr 20.8 2E+02 0.0044 31.4 6.1 68 518-585 75-147 (379)
41 MTH00053 CYTB cytochrome b; Pr 20.7 2E+02 0.0043 31.5 6.0 69 516-584 73-146 (381)
42 PF10539 Dev_Cell_Death: Devel 20.5 67 0.0015 29.8 2.0 39 20-72 68-110 (130)
43 COG1575 MenA 1,4-dihydroxy-2-n 20.1 5.6E+02 0.012 27.2 8.9 33 239-271 42-74 (303)
No 1
>KOG1278|consensus
Probab=100.00 E-value=7.2e-184 Score=1447.16 Aligned_cols=548 Identities=55% Similarity=1.047 Sum_probs=523.6
Q ss_pred CCCCCCCccCccCCCCCcccccccCceecCCcc--ccccccccccccccccCCCCCCHHHHHHHHHHHhccceEEEEEec
Q psy11431 1 FDFCTVEREEKESPAENLGQVVFGERIRPSPYK--MNEDQTCTELCTKTYTPGNSDSEMKLALLKRGMDLNYYHHWIVDN 78 (590)
Q Consensus 1 lpfC~p~~~~~~~~~~slGevL~Gdr~~~S~y~--f~~d~~c~~lC~~~y~~~~~~~~~~~~~l~~~I~~~Y~~~~~iD~ 78 (590)
+|||+|+ ++++++|||||+|+|||++||||+ |++|++|+.+|+. ++++|+++.++|+|+++|++||++||
T Consensus 64 ~~Fc~p~--~i~~~~EnLGeVl~GDRi~nSPy~~~m~e~~~C~~lC~~------k~~~~~~~~l~~~I~~~Y~v~wivDn 135 (628)
T KOG1278|consen 64 LPFCRPE--KIKKQSENLGEVLRGDRIENSPYKFKMLENQPCETLCAT------KLDKEDAKLLKKLIREGYVVNWIVDN 135 (628)
T ss_pred ccccCcc--ccCCcccchhceeccCcccCCCceEecccCCcchhhhcc------cCCHHHHHHHHHHHhhccEeeeeecC
Confidence 6999999 788899999999999999999999 9999999999976 58999999999999999999999999
Q ss_pred eeeeEEEEc-CCCceeeeCCeecceeeccccccccccccCCCCCCeeEEeeeEEEEEEEeCCCCCccCCcCCCCCCeEEE
Q psy11431 79 MPVTWCYLT-NDGQKYCNTGFPMGCYKHAYQDFCSSMIGEGSPNDMYYVFNHVDIRITYHSGEDEEWGSSFQGNGGRIIA 157 (590)
Q Consensus 79 LPv~~~~~~-~~~~~~y~~GfplG~~~~~~~~~~~~~~~~~~~~~~~yL~NHl~f~I~Yn~~~~~~~~~~~~~~~~rIVg 157 (590)
||+++++.. ++++++|.+|||+|+.+++ +.+++|++||++|+|+||+.+++ ++||||
T Consensus 136 lPva~~~~~~~~~~~~y~~GfplG~~~~~-------------~~~~~y~~NHl~~~i~yH~~~~~---------~~riVg 193 (628)
T KOG1278|consen 136 LPVATRYERSDDGKVYYGTGFPLGFKGPK-------------DEDKYYLHNHLDFVIRYHRDDND---------KYRIVG 193 (628)
T ss_pred CceeEEEeecCCCceEeccCccceeccCC-------------CccceeEeeeEEEEEEEEecCCC---------ceEEEE
Confidence 999988875 4588999999999986431 45789999999999999987664 389999
Q ss_pred EEEeeeccccCCCCCCC----CCCCCCCCCCCccccCCCCCCCCceEEEEEEEEEEeCCCccccchhhhhcccCCccchh
Q psy11431 158 VKITPRSISHIEEPGKP----PVCSSAQGELQPMAVPKGKLDKPLQIKYTYSIMFQKNNTVKWSSRWDYILESTSHTNIH 233 (590)
Q Consensus 158 ~~V~P~Si~~~~~~~~~----~~C~~~~~~~~~~~l~~~~~~~~~~i~fTYSV~w~~s~~~~w~~Rwd~yl~~~~~~~ih 233 (590)
|||+|+|++|+++++++ ++|+.. ++|.++++ +++++|.|||||+|+||+ ++|++|||+|| +++|.|||
T Consensus 194 feV~P~Si~~~~~~~~~~~~~~~c~~~---~~~~~~~e---~~~~~i~fTYsV~f~esd-i~WasRWD~yL-~m~~~qIh 265 (628)
T KOG1278|consen 194 FEVKPVSIKHEHEKGDSKNSLPTCSIP---EKPLELDE---GEETEIVFTYSVKFEESD-IKWASRWDYYL-HMEDVQIH 265 (628)
T ss_pred EEEEeeeeecccCCCcccccCCcccCC---CCccccCC---CCceEEEEEEEEEEEecc-CcchhhHHHHh-cCCCCceE
Confidence 99999999999875443 467642 45566665 567789999999999999 99999999999 78999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchhhcccceEEeccccCCCCCccchheeeccchHHHHHHH
Q psy11431 234 WFSILNSLMIVLFLSGMVAMIILRTLHKDIARYNQIDSGEDVQEEFGWKLVHGDVFRPPRKGMLLSVLLGSGIQILMMTM 313 (590)
Q Consensus 234 w~SIiNS~~ivl~L~~~v~~Il~R~lr~D~~~Yn~~~~~~~~~ee~GWKlvhgDVFR~P~~~~lLs~lvG~G~Qll~~~~ 313 (590)
||||+||+++|+||+++|+||++||||||++|||++|.|||.|||+|||||||||||||+++++||++||+|+|+++|++
T Consensus 266 WfSIiNSlvIVlfLSgiv~mI~lRtl~rDiarYne~d~~~d~~Ee~GWKLVhGDVFR~P~~~~lLsv~vGsGvQ~l~M~~ 345 (628)
T KOG1278|consen 266 WFSIINSLVIVLFLSGIVAMIMLRTLYRDIARYNELDLDDDAQEESGWKLVHGDVFRPPRNSMLLSVLVGSGVQLLGMIL 345 (628)
T ss_pred EEehhhhHHHHHHHHHHHHHHHHHHHHHhHhhhccccchhhhhhhcceEEeecccccCCCCCeEEEEEeccChhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccchhhhhhhhhcCCCchhhhhhhhhccchhHHHHHHHHHHHHHHhcc
Q psy11431 314 VTLAFACLGFLSPANRGALMTCAMVMYVCLGTPAGYISARIYKSFGGEKWKSNIILTSTLVPGVVFCLFFVMNLIFWAKD 393 (590)
Q Consensus 314 ~~l~~a~~g~~~p~~rg~l~t~~i~~y~~~~~i~Gy~s~~lyk~~~g~~W~~~~~lt~~l~P~~~~~i~~~lN~i~~~~~ 393 (590)
+++++||+|+++|++||+++|+++++|+++|++|||+|+|+||+++|+.||+++++|++++||++|++++++|+++|+++
T Consensus 346 vti~fA~lGflSPs~RGsLmT~~~~l~v~~G~~agY~s~rlyk~~~g~~wk~~~~lta~l~PGivf~~~f~lN~~lW~~~ 425 (628)
T KOG1278|consen 346 VTIFFACLGFLSPSSRGSLMTAMVLLFVFMGFVAGYVSARLYKTFKGREWKRNAILTAFLFPGIVFAIFFVLNFFLWGKH 425 (628)
T ss_pred HHHHHHHhccCCccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhcCCcchhhHHhhhhhcchHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccChHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCCCCCccCCCCCCCCCCcccccccceeeecccccceehhhhHH
Q psy11431 394 SSAAVPFSTLLALVSLWVWVSMPLTFIGSFFGFRKRAIEHPVRTNQIPRQIPEQSVYTQAIPGVIMGGVLPFGCIFIQLY 473 (590)
Q Consensus 394 Ss~aipf~ti~~l~~lw~~vs~PL~~lG~~~g~~~~~~~~P~~~n~ipR~IP~~~~y~~~~~~~l~~G~lPF~~i~iEl~ 473 (590)
||+|+||+|++++++||++||+||+++|+++|+|++++|+|+||||||||||+||||+++++++++||++||++|||||+
T Consensus 426 SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~PvrTNqIpRqIP~q~~y~~~~~~ili~GilPFg~ifIELf 505 (628)
T KOG1278|consen 426 SSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPVRTNQIPRQIPEQPWYLNPIPSILIAGILPFGAIFIELF 505 (628)
T ss_pred CCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCcccCCCcccCCCCccccchhhHHHhhcccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeeceecccchhHHHHHHHhhheeeeeeccccc
Q psy11431 474 FILSSIWSSQTYYMFGFLFLVFLILIITCSETTILLCYFHLCAEDYHWWWRSFITSGFTSIYLFIYCIHYFETRLNISDA 553 (590)
Q Consensus 474 ~i~~s~W~~~~yy~fgfL~~~~~ilii~~a~vsIi~~Y~~L~~Edy~WwW~SF~~~gs~~~y~flYsi~y~~~~~~~~g~ 553 (590)
||++|+|.+|+||+|||||++++||+++|+|+||++||+|||+||||||||||++||++|+|+|+||++|+++|++++|+
T Consensus 506 FI~~SiW~~qfYY~FGFLFlvfiiLvvtcaeisIvl~Yf~LC~Edy~WwWRsF~~sG~~avY~fiYsi~Y~~~kL~i~g~ 585 (628)
T KOG1278|consen 506 FILSSIWLNQFYYMFGFLFLVFIILVVTCAEISIVLTYFQLCAEDYNWWWRSFLTSGSSAVYVFIYSIFYFFTKLEISGF 585 (628)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeeeeeccCcchhhHHHHHHhhhheeeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHhcchHHHHHHHhh
Q psy11431 554 SSVFLYFGYTLIMVFLFFIMTGMCEMLVSLVGS 586 (590)
Q Consensus 554 ~~~~lyf~y~~l~~~~~~l~~GtiGflas~~~~ 586 (590)
+++++|||||++++++++|+||||||+||+||-
T Consensus 586 ~s~~LYfgYsli~~~~~~l~tGtIGF~a~~~Fv 618 (628)
T KOG1278|consen 586 VSAVLYFGYSLIISLLFFLLTGTIGFLAAFWFV 618 (628)
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999999999999999999999999984
No 2
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=2e-148 Score=1232.51 Aligned_cols=509 Identities=52% Similarity=1.001 Sum_probs=479.8
Q ss_pred CCCCCCCccC-ccCCCCCcccccccCceecCCcc--ccccccccccccccccCCCCCCHHHHHHHHHHHhccceEEEEEe
Q psy11431 1 FDFCTVEREE-KESPAENLGQVVFGERIRPSPYK--MNEDQTCTELCTKTYTPGNSDSEMKLALLKRGMDLNYYHHWIVD 77 (590)
Q Consensus 1 lpfC~p~~~~-~~~~~~slGevL~Gdr~~~S~y~--f~~d~~c~~lC~~~y~~~~~~~~~~~~~l~~~I~~~Y~~~~~iD 77 (590)
||||+|+ + .+++++||||+|+|||+++|||+ |++|++|+++|++ +++++|+++++++|+|+|++||++|
T Consensus 8 lPfC~P~--~~~~~~~~slGevL~Gdr~~~S~y~i~f~~~~~c~~lC~~------~l~~~~~~~l~~~I~~~Y~~~~~vD 79 (521)
T PF02990_consen 8 LPFCRPE--EGIEHKSESLGEVLRGDRIQNSPYEIKFLQNVTCKVLCKK------TLTKEDVKKLKEAIENNYRVEMYVD 79 (521)
T ss_pred CCCcCCC--CccccccCCHHHHhccCceecCceEEEEecCcchhhccCc------cCCHHHHHHHHHHHHHhheeeEEec
Confidence 7999998 5 78889999999999999999999 9999999999988 5889999999999999999999999
Q ss_pred ceeeeEEEEcCC-CceeeeCCeecceeeccccccccccccCCCCCCeeEEeeeEEEEEEEeCCCCCccCCcCCCCCCeEE
Q psy11431 78 NMPVTWCYLTND-GQKYCNTGFPMGCYKHAYQDFCSSMIGEGSPNDMYYVFNHVDIRITYHSGEDEEWGSSFQGNGGRII 156 (590)
Q Consensus 78 ~LPv~~~~~~~~-~~~~y~~GfplG~~~~~~~~~~~~~~~~~~~~~~~yL~NHl~f~I~Yn~~~~~~~~~~~~~~~~rIV 156 (590)
|||++....+.+ .+..|..|+|+|. ++++++|||||++|+|+||++++++ +|||
T Consensus 80 ~LP~~~~~~~~~~~~~~y~~G~~~g~----------------~~~~~~~l~NH~~f~I~Yn~~~~~~---------~~IV 134 (521)
T PF02990_consen 80 DLPIAGFIGSVDGCDKGYPIGFPLGF----------------KDDNKYYLYNHLDFTIRYNQESNGD---------YRIV 134 (521)
T ss_pred CceEEEEecccCCcceecCCCcccCc----------------ccCCcceeEeEEEEEEEEECCCCCc---------eEEE
Confidence 999998887644 4677888999884 3467899999999999999876543 7999
Q ss_pred EEEEeeeccccCCCCCCCCCCCCCCCCCCccccCCCCCCCCceEEEEEEEEEEeCCCccccchhhhhcccCCccchhhHH
Q psy11431 157 AVKITPRSISHIEEPGKPPVCSSAQGELQPMAVPKGKLDKPLQIKYTYSIMFQKNNTVKWSSRWDYILESTSHTNIHWFS 236 (590)
Q Consensus 157 g~~V~P~Si~~~~~~~~~~~C~~~~~~~~~~~l~~~~~~~~~~i~fTYSV~w~~s~~~~w~~Rwd~yl~~~~~~~ihw~S 236 (590)
||||+|+|++|. +|+.. ..+++++++ +++..+|+|||||+|++++ ++|++|||+|+++..+.++||+|
T Consensus 135 gf~v~p~Si~~~-------~C~~~--~~~~~~l~~--~~~~~~i~fTYSV~w~~s~-~~w~~Rwd~Yl~~~~~~~ihw~S 202 (521)
T PF02990_consen 135 GFEVTPRSIDHS-------TCPGN--ESSPQELPE--DKEADNITFTYSVKWEESD-VPWASRWDKYLDSMFDSQIHWFS 202 (521)
T ss_pred EEEEEeccccCc-------ccccc--CCCCeeccC--CCcccEEEEEEEEEEEecC-CchhhccccccccccCCceEEEe
Confidence 999999999874 47642 356777765 1122279999999999999 99999999999656778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchhhcccceEEeccccCCCCCccchheeeccchHHHHHHHHHH
Q psy11431 237 ILNSLMIVLFLSGMVAMIILRTLHKDIARYNQIDSGEDVQEEFGWKLVHGDVFRPPRKGMLLSVLLGSGIQILMMTMVTL 316 (590)
Q Consensus 237 IiNS~~ivl~L~~~v~~Il~R~lr~D~~~Yn~~~~~~~~~ee~GWKlvhgDVFR~P~~~~lLs~lvG~G~Qll~~~~~~l 316 (590)
|+||+++|+||+++|++||+|++|||++|||+++++||++||+|||+|||||||||+|+++||+++|+|+|+++|+++++
T Consensus 203 iiNS~iivl~L~~~v~~Il~R~l~~D~~~y~~~~~~~~~~ee~GWKlvhgDVFR~P~~~~lls~lvG~G~Qll~~~~~~~ 282 (521)
T PF02990_consen 203 IINSFIIVLFLSGLVAIILLRTLRRDISRYNDEDSEEDDQEESGWKLVHGDVFRPPKHPMLLSALVGTGIQLLFMALVTL 282 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccchhhhhHHHhcCcCCchHHHhHhcchhhhhHHHHHHH
Confidence 99999999999999999999999999999999998778899999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCchhHHHHHHHHHHHhhcccchhhhhhhhhcCCCchhhhhhhhhccchhHHHHHHHHHHHHHHhccCCC
Q psy11431 317 AFACLGFLSPANRGALMTCAMVMYVCLGTPAGYISARIYKSFGGEKWKSNIILTSTLVPGVVFCLFFVMNLIFWAKDSSA 396 (590)
Q Consensus 317 ~~a~~g~~~p~~rg~l~t~~i~~y~~~~~i~Gy~s~~lyk~~~g~~W~~~~~lt~~l~P~~~~~i~~~lN~i~~~~~Ss~ 396 (590)
++|++|+++|++||+++++++++|+++|++|||+|||+||+++|++||+++++|++++|++++++++++|+++|.++||+
T Consensus 283 ~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~~~P~~~~~~~~~~n~i~~~~~ss~ 362 (521)
T PF02990_consen 283 FFAALGFLSPNNRGSLLTAAIILYALTSFIAGYVSARLYKSFGGKKWKKNSILTSLLFPGILFSIFFILNFIAWSYGSSS 362 (521)
T ss_pred HHHHhhhccccCcchHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCceeehhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHhhhhhhhhhhhhhcccCCC-CCCCccCCCCCCCCCCcccccccceeeecccccceehhhhHHHH
Q psy11431 397 AVPFSTLLALVSLWVWVSMPLTFIGSFFGFRKRAI-EHPVRTNQIPRQIPEQSVYTQAIPGVIMGGVLPFGCIFIQLYFI 475 (590)
Q Consensus 397 aipf~ti~~l~~lw~~vs~PL~~lG~~~g~~~~~~-~~P~~~n~ipR~IP~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i 475 (590)
|+||+|++.++++|++|++||+++|+++|+|+++. +.|||+|+|||+||+||||+++++.++++|++||++||+|++||
T Consensus 363 aipf~t~~~l~~lw~~v~~PL~~lG~~~g~k~~~~~~~p~~~n~ipR~IP~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i 442 (521)
T PF02990_consen 363 AIPFGTILFLIALWFFVSIPLTFLGGYFGFKNPPIDEFPCRTNQIPRQIPPQPWYLSPFFSILIGGILPFGAIFIELYFI 442 (521)
T ss_pred ccchHHHHHHHHHHHHHhhhhhhcchhhhcCccccccCCcCCCCCCCcCCCCccccCCccceeecchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888 99999999999999999999999999999999999999999999
Q ss_pred HHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeeceecccchhHHHHHHHhhheeeeeecccccc
Q psy11431 476 LSSIWSSQTYYMFGFLFLVFLILIITCSETTILLCYFHLCAEDYHWWWRSFITSGFTSIYLFIYCIHYFETRLNISDAS 554 (590)
Q Consensus 476 ~~s~W~~~~yy~fgfL~~~~~ilii~~a~vsIi~~Y~~L~~Edy~WwW~SF~~~gs~~~y~flYsi~y~~~~~~~~g~~ 554 (590)
++|+|.+++||+||||+++++|++++|||+||++||+|||+||||||||||++|||+|+|+|+||+||+++|++|+||+
T Consensus 443 ~~s~W~~~~y~~fgfl~~~~~ll~i~~a~vsI~~tY~~L~~Edy~WwWrSF~~~~s~~~y~f~Ysi~y~~~~~~~~g~~ 521 (521)
T PF02990_consen 443 FSSLWSNKFYYLFGFLLLVFILLIITCAEVSIILTYFQLCAEDYRWWWRSFLTGGSSGIYVFLYSIYYYFTKLSMSGFV 521 (521)
T ss_pred HHHhhcCcceEEehHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeehhCcHHHHHHHHHHHHhhheeEEeeecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999984
No 3
>KOG1277|consensus
Probab=100.00 E-value=6.9e-148 Score=1145.75 Aligned_cols=512 Identities=36% Similarity=0.751 Sum_probs=483.9
Q ss_pred CCCCCCCccCccCCCCCcccccccCceecCCcc--ccccccccccccccccCCCCCCHHHHHHHHHHHhccceEEEEEec
Q psy11431 1 FDFCTVEREEKESPAENLGQVVFGERIRPSPYK--MNEDQTCTELCTKTYTPGNSDSEMKLALLKRGMDLNYYHHWIVDN 78 (590)
Q Consensus 1 lpfC~p~~~~~~~~~~slGevL~Gdr~~~S~y~--f~~d~~c~~lC~~~y~~~~~~~~~~~~~l~~~I~~~Y~~~~~iD~ 78 (590)
||||.++.+++++++|+|||+|.|||++.|+|+ |+.|++.+++|.+ ++++++++.++++|+++|++||++||
T Consensus 62 LPfC~g~~~~i~hk~etLGEvL~G~eL~~s~y~ikF~~~v~~~v~C~~------~L~~e~v~~f~~AI~~~Yyfqmy~Dd 135 (593)
T KOG1277|consen 62 LPFCSGSKESISHKHETLGEVLQGDELEFSGYEIKFRDNVEKEVYCEK------KLSEEKVKAFRYAIENDYYFQMYIDD 135 (593)
T ss_pred cceecCCCcccchhhhhHHhhhCCceeeecceeeeecccCCceeeehh------hcCHHHHHHHHHHHHhhheeeeeecC
Confidence 799996544788999999999999999999999 9999999999987 69999999999999999999999999
Q ss_pred eeeeEEEEcCCCceeeeCCeecceeeccccccccccccCCCCCCeeEEeeeEEEEEEEeCCCCCccCCcCCCCCCeEEEE
Q psy11431 79 MPVTWCYLTNDGQKYCNTGFPMGCYKHAYQDFCSSMIGEGSPNDMYYVFNHVDIRITYHSGEDEEWGSSFQGNGGRIIAV 158 (590)
Q Consensus 79 LPv~~~~~~~~~~~~y~~GfplG~~~~~~~~~~~~~~~~~~~~~~~yL~NHl~f~I~Yn~~~~~~~~~~~~~~~~rIVg~ 158 (590)
||+| || +|+.|++. -+++.||||+||.+|.|.||+ +|||.+
T Consensus 136 lPIw--------------Gf-vGe~d~~k----------~~~~~ky~L~thk~f~i~yn~--------------drii~v 176 (593)
T KOG1277|consen 136 LPIW--------------GF-VGEVDEDK----------LDNEGKYYLYTHKKFEIGYNG--------------DRIIDV 176 (593)
T ss_pred ceee--------------eE-eeeecccc----------CCCCCceEEEEeeeEEEeecC--------------ceEEEE
Confidence 9999 99 99987652 236789999999999999997 599999
Q ss_pred EEeeeccccCCCCCCCCCCCCCCCCCCccccCCCCCCCCceEEEEEEEEEEeCCCccccchhhhhcccC-CccchhhHHH
Q psy11431 159 KITPRSISHIEEPGKPPVCSSAQGELQPMAVPKGKLDKPLQIKYTYSIMFQKNNTVKWSSRWDYILEST-SHTNIHWFSI 237 (590)
Q Consensus 159 ~V~P~Si~~~~~~~~~~~C~~~~~~~~~~~l~~~~~~~~~~i~fTYSV~w~~s~~~~w~~Rwd~yl~~~-~~~~ihw~SI 237 (590)
++...+ +.++.+ +..+++||||+|.|++ +++++|.|+|+|.. ..++||||||
T Consensus 177 nlt~~~---------------------~v~L~~-----~~~~~~tYsV~W~~t~-v~f~~rfdkyld~~ff~h~IHWfSI 229 (593)
T KOG1277|consen 177 NLTTHG---------------------LVDLRP-----DKKLTFTYSVKWKETE-VEFEKRFDKYLDPSFFPHRIHWFSI 229 (593)
T ss_pred Eeeecc---------------------cccCCC-----CCCCceEEEEEeeecc-CcHHHHhHhhcccccccceeehhhH
Confidence 988643 233433 3478999999999999 99999999999743 3457999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCC-----CcchhhcccceEEeccccCCCCCccchheeeccchHHHHHH
Q psy11431 238 LNSLMIVLFLSGMVAMIILRTLHKDIARYNQIDS-----GEDVQEEFGWKLVHGDVFRPPRKGMLLSVLLGSGIQILMMT 312 (590)
Q Consensus 238 iNS~~ivl~L~~~v~~Il~R~lr~D~~~Yn~~~~-----~~~~~ee~GWKlvhgDVFR~P~~~~lLs~lvG~G~Qll~~~ 312 (590)
+||+|+|+||+|+|+|||+|+||||++||+++|+ |+|++||.|||+|||||||||+|+.|||+++|+|.|++...
T Consensus 230 fNSfmmVifLvGlvamILMRtLrnDyarY~~dee~~d~~d~d~~~E~GWK~vHgDVFR~p~~~~Lfsa~lGsG~Qlf~l~ 309 (593)
T KOG1277|consen 230 FNSFMMVIFLVGLVAMILMRTLRNDYARYAKDEEALDDMDRDDQEEYGWKQVHGDVFRFPSHPLLFSAVLGSGAQLFTLV 309 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhccccccccccccceeeecccccCCCccHHHHHHhccccchHHHH
Confidence 9999999999999999999999999999998875 34789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccchhhhhhhhhcCCCchhhhhhhhhccchhHHHHHHHHHHHHHHhc
Q psy11431 313 MVTLAFACLGFLSPANRGALMTCAMVMYVCLGTPAGYISARIYKSFGGEKWKSNIILTSTLVPGVVFCLFFVMNLIFWAK 392 (590)
Q Consensus 313 ~~~l~~a~~g~~~p~~rg~l~t~~i~~y~~~~~i~Gy~s~~lyk~~~g~~W~~~~~lt~~l~P~~~~~i~~~lN~i~~~~ 392 (590)
++++++|++|.+++. ||++++++|++|+++|.++||++|.+|.+.||++|.|++++|+.++|+++++.++++|++++++
T Consensus 310 ~~ii~~Alvg~fy~~-rGal~saaI~vYAlTs~i~GY~~gs~Y~r~gG~~Wik~m~lta~Lfp~~~~~t~~~~N~vai~y 388 (593)
T KOG1277|consen 310 LIIIMLALVGVFYTE-RGALLSAAIVVYALTSPINGYVSGSFYARLGGRRWIKNMLLTASLFPVPVFGTAFLLNTVAIAY 388 (593)
T ss_pred HHHHHHHHHhhhhcc-chHHHHHHHHHHHhcccccccccceeeehhccHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 999999999999976 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccChHHHHHHHHHHHHhhhhhhhhhhhhhcc-cCCCCCCCccCCCCCCCCCCcccccccceeeecccccceehhhh
Q psy11431 393 DSSAAVPFSTLLALVSLWVWVSMPLTFIGSFFGFR-KRAIEHPVRTNQIPRQIPEQSVYTQAIPGVIMGGVLPFGCIFIQ 471 (590)
Q Consensus 393 ~Ss~aipf~ti~~l~~lw~~vs~PL~~lG~~~g~~-~~~~~~P~~~n~ipR~IP~~~~y~~~~~~~l~~G~lPF~~i~iE 471 (590)
+|++|+||+|+++++++|++|..||+++|++.|.. +.+++.|||++++||+||++|||++|.+.+++||+|||++||||
T Consensus 389 ~at~AlPfgt~v~v~~iw~fv~~PL~~~G~i~GkN~~~~~~~PCR~~~~pR~Ip~~kWy~~~~~~~~~gG~LPFgsIfIE 468 (593)
T KOG1277|consen 389 GATAALPFGTIVVVLLIWLFVISPLTVLGGIAGKNRSGEFDAPCRTKAIPREIPPKKWYRSPLVIMLMGGFLPFGSIFIE 468 (593)
T ss_pred ccccccCccchHHHHHHHHHHhchHHHcccccccccccCCCCCcccccCCCCCCCccccccchHHHHhhccCccchhhhh
Confidence 99999999999999999999999999999999964 56789999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcceeeceecccchhHHHHHHHhhheeeeeeccc
Q psy11431 472 LYFILSSIWSSQTYYMFGFLFLVFLILIITCSETTILLCYFHLCAEDYHWWWRSFITSGFTSIYLFIYCIHYFETRLNIS 551 (590)
Q Consensus 472 l~~i~~s~W~~~~yy~fgfL~~~~~ilii~~a~vsIi~~Y~~L~~Edy~WwW~SF~~~gs~~~y~flYsi~y~~~~~~~~ 551 (590)
+||||+|+|.+++||+|||++++++||+++++||||++||+||++||||||||||+++||+|+|+++||+|||++|++|.
T Consensus 469 mYfIFtSfW~ykiYyvYgfm~lVf~IL~iVtvcvTIv~TYFlLnaEDyrW~WtSfls~~ST~~yvy~Ys~yYy~~ktkMs 548 (593)
T KOG1277|consen 469 MYFIFTSFWGYKIYYVYGFMFLVFVILLIVTVCVTIVLTYFLLNAEDYRWWWTSFLSAGSTALYVYLYSFYYYFFKTKMS 548 (593)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccccceeeeeeeeccccceeehhhhHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhcchHHHHHHHh
Q psy11431 552 DASSVFLYFGYTLIMVFLFFIMTGMCEMLVSLVG 585 (590)
Q Consensus 552 g~~~~~lyf~y~~l~~~~~~l~~GtiGflas~~~ 585 (590)
|+.|+.+|||||+++|.++|+|||+|||.++..|
T Consensus 549 G~fQTsfyFGYm~~f~~~lgim~Gtigy~gt~~F 582 (593)
T KOG1277|consen 549 GLFQTSFYFGYMAVFCYALGLMCGTIGYVGTLLF 582 (593)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHhhHhhhHHHHH
Confidence 9999999999999999999999999999999877
No 4
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=85.42 E-value=3.4 Score=37.28 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=55.9
Q ss_pred hheeeccchHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccchhhhhhhhhcCCCchhhhhhhhhccchhH
Q psy11431 298 LSVLLGSGIQILMMTMVTLAFACLGFLSPANRGALMTCAMVMYVCLGTPAGYISARIYKSFGGEKWKSNIILTSTLVPGV 377 (590)
Q Consensus 298 Ls~lvG~G~Qll~~~~~~l~~a~~g~~~p~~rg~l~t~~i~~y~~~~~i~Gy~s~~lyk~~~g~~W~~~~~lt~~l~P~~ 377 (590)
-+++-|.-.-+..+.+..++++.+-...+-+.+.+-....+.++++.+++|++++|. -+.|.|..- ..++.++-.+
T Consensus 5 ~~vl~g~~~~~~~tl~~~l~~a~ll~~~~~~e~~~~~~~~~i~~ls~~~GG~~a~~~---~~~kG~l~G-~~~Gl~y~~i 80 (116)
T PF12670_consen 5 SAVLKGLLVAYIITLILLLLLALLLYFTSLSESILPWLVVIIYILSVFIGGFYAGRK---AGSKGWLHG-LLVGLLYFLI 80 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HccchHHHH-HHHHHHHHHH
Confidence 345556667777788888888877666666777888888899999999999999965 556778864 4455544444
Q ss_pred H
Q psy11431 378 V 378 (590)
Q Consensus 378 ~ 378 (590)
+
T Consensus 81 l 81 (116)
T PF12670_consen 81 L 81 (116)
T ss_pred H
Confidence 3
No 5
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=83.78 E-value=12 Score=38.10 Aligned_cols=38 Identities=18% Similarity=0.484 Sum_probs=21.4
Q ss_pred hhccchhHHHHHHHHHHHHHHhccCCCccChHHHHHHHHHHHHhh
Q psy11431 370 TSTLVPGVVFCLFFVMNLIFWAKDSSAAVPFSTLLALVSLWVWVS 414 (590)
Q Consensus 370 t~~l~P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~vs 414 (590)
...++|+..+.+.++- . .++..+...++.+.++|+-+.
T Consensus 200 n~~ll~~~~~~l~i~s----~---~t~~~q~la~lvl~~I~iyi~ 237 (248)
T PF11368_consen 200 NQYLLPILYILLFIYS----L---LTGENQLLAILVLIIIWIYIN 237 (248)
T ss_pred HHHHHHHHHHHHHHHH----H---HcCCccHHHHHHHHHHHHHHH
Confidence 4456677655544332 1 234455666677777777543
No 6
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=68.52 E-value=1.6 Score=45.06 Aligned_cols=34 Identities=12% Similarity=0.277 Sum_probs=0.0
Q ss_pred hhhhhhcCCCchhhhhhhhhccchhHHHHHHHHH
Q psy11431 352 ARIYKSFGGEKWKSNIILTSTLVPGVVFCLFFVM 385 (590)
Q Consensus 352 ~~lyk~~~g~~W~~~~~lt~~l~P~~~~~i~~~l 385 (590)
..+.+..+..-|...+++-++++-.++++|...+
T Consensus 126 m~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L 159 (381)
T PF05297_consen 126 MWLLRELGASFWTILAFCLAFLLAIVLLIIAVLL 159 (381)
T ss_dssp ----------------------------------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677888899888877776555544444443
No 7
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=62.87 E-value=93 Score=35.40 Aligned_cols=121 Identities=19% Similarity=0.403 Sum_probs=71.7
Q ss_pred eeecccccceehhhhHHHHHHhhcccc--hhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccC----CC------------
Q psy11431 457 VIMGGVLPFGCIFIQLYFILSSIWSSQ--TYYMFGFLFLVFLILIITCSETTILLCYFHLCA----ED------------ 518 (590)
Q Consensus 457 ~l~~G~lPF~~i~iEl~~i~~s~W~~~--~yy~fgfL~~~~~ilii~~a~vsIi~~Y~~L~~----Ed------------ 518 (590)
++.+.++|... +.=...+-.-.|.++ --..|+-++..+.+++.++.-.+++..|+-... |.
T Consensus 334 ~lt~~~~P~~~-~~~~~~~n~i~~~~~ss~aipf~t~~~l~~lw~~v~~PL~~lG~~~g~k~~~~~~~p~~~n~ipR~IP 412 (521)
T PF02990_consen 334 ILTSLLFPGIL-FSIFFILNFIAWSYGSSSAIPFGTILFLIALWFFVSIPLTFLGGYFGFKNPPIDEFPCRTNQIPRQIP 412 (521)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhhhhhhcchhhhcCccccccCCcCCCCCCCcCC
Confidence 44556778743 333334444456543 235677788888888888888998888866332 21
Q ss_pred -cceeecee---cccc---hhHHHHHHHhhheeeeeecccccchhhHHHHHHHHHHHHHHHHhcchHHHHHHH
Q psy11431 519 -YHWWWRSF---ITSG---FTSIYLFIYCIHYFETRLNISDASSVFLYFGYTLIMVFLFFIMTGMCEMLVSLV 584 (590)
Q Consensus 519 -y~WwW~SF---~~~g---s~~~y~flYsi~y~~~~~~~~g~~~~~lyf~y~~l~~~~~~l~~GtiGflas~~ 584 (590)
-.|.=+.+ +.+| ..++|+++|-++--+-.-+ ....||+.++..+++.+.|+.++-+.++.
T Consensus 413 ~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~s~W~~~------~y~~fgfl~~~~~ll~i~~a~vsI~~tY~ 479 (521)
T PF02990_consen 413 PQPWYLSPFFSILIGGILPFGAIFIELYFIFSSLWSNK------FYYLFGFLLLVFILLIITCAEVSIILTYF 479 (521)
T ss_pred CCccccCCccceeecchHHHHHHHHHHHHHHHHhhcCc------ceEEehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23543333 4555 4566777775543322111 23335666666677777778887777663
No 8
>KOG2568|consensus
Probab=60.77 E-value=3.1 Score=46.70 Aligned_cols=147 Identities=18% Similarity=0.309 Sum_probs=86.5
Q ss_pred CCCCccchheeeccchHHHHHHHHHHHHHHhhccCCCCchhHHHHHHH--HHHHhhcccchhhhhhhhhc--CCCchhhh
Q psy11431 291 PPRKGMLLSVLLGSGIQILMMTMVTLAFACLGFLSPANRGALMTCAMV--MYVCLGTPAGYISARIYKSF--GGEKWKSN 366 (590)
Q Consensus 291 ~P~~~~lLs~lvG~G~Qll~~~~~~l~~a~~g~~~p~~rg~l~t~~i~--~y~~~~~i~Gy~s~~lyk~~--~g~~W~~~ 366 (590)
.|+-.+.++.+++++=+-+.-+++.++---.|+++|.-+|.++..+.+ .|.+.+.+.|-+ +.+..- ...+|+..
T Consensus 265 ~~~~~~~~a~i~sa~K~Tlsr~LlLIVSlGYGIVkP~Lg~~l~rv~~ig~~~~i~s~i~~l~--~~~g~~se~~~~~~lf 342 (518)
T KOG2568|consen 265 SPKVYTVFASILSAIKKTLSRLLLLIVSLGYGIVKPTLGGTLLRVCQIGVIYFIASEILGLA--RVIGNISELSSLLILF 342 (518)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCcchHHHHHHHHhHHHHHHHHHHHHH--HHhcCcccccchhhHH
Confidence 788889999999999888877666555555899999888777766532 233333333322 112111 01112211
Q ss_pred hhhhhccchhHHHHHHHHHHHHHHhccCCCccChHHHHHHHHHHHHhhhhhhhhhhhhhcccCCCCCCCccCCCCCCCCC
Q psy11431 367 IILTSTLVPGVVFCLFFVMNLIFWAKDSSAAVPFSTLLALVSLWVWVSMPLTFIGSFFGFRKRAIEHPVRTNQIPRQIPE 446 (590)
Q Consensus 367 ~~lt~~l~P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~lG~~~g~~~~~~~~P~~~n~ipR~IP~ 446 (590)
. ++|+--....+..|+++|++=|+- .=++.|++-+
T Consensus 343 ~-----------------------------~ip~ai~d~~f~~wIF~SL~~Tlk----------------~Lr~rRn~vK 377 (518)
T KOG2568|consen 343 A-----------------------------ALPLAILDAAFIYWIFISLAKTLK----------------KLRLRRNIVK 377 (518)
T ss_pred H-----------------------------HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHH
Confidence 0 233444456677899998875542 2234566665
Q ss_pred CcccccccceeeecccccceehhhhHHHHH----Hhhcccch
Q psy11431 447 QSVYTQAIPGVIMGGVLPFGCIFIQLYFIL----SSIWSSQT 484 (590)
Q Consensus 447 ~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~----~s~W~~~~ 484 (590)
-.-|++-.-.+.++=+.-|+-+.+|.++.- +..|....
T Consensus 378 l~lYr~F~n~l~~~Vvas~~~i~~~~~~~~~~~~~~~Wk~~W 419 (518)
T KOG2568|consen 378 LSLYRKFTNTLAFSVVASFAFILVETIFYSIMSCNKDWKERW 419 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 566766443333444556666778877754 66777653
No 9
>KOG1278|consensus
Probab=57.21 E-value=3.6e+02 Score=31.12 Aligned_cols=195 Identities=18% Similarity=0.371 Sum_probs=104.3
Q ss_pred hcccceEEeccccCCCCCccchheeeccchHHHHHHHHHHHHHHhhccCC-CCchhHHHHHHHHHHHh----hcccchhh
Q psy11431 277 EEFGWKLVHGDVFRPPRKGMLLSVLLGSGIQILMMTMVTLAFACLGFLSP-ANRGALMTCAMVMYVCL----GTPAGYIS 351 (590)
Q Consensus 277 ee~GWKlvhgDVFR~P~~~~lLs~lvG~G~Qll~~~~~~l~~a~~g~~~p-~~rg~l~t~~i~~y~~~----~~i~Gy~s 351 (590)
+..+||. ..++++++=-|+=+...++.=.++ .|.-|- +-.=+.+-+++++|.+- ++++||++
T Consensus 391 ~g~~wk~-----------~~~lta~l~PGivf~~~f~lN~~l--W~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g 457 (628)
T KOG1278|consen 391 KGREWKR-----------NAILTAFLFPGIVFAIFFVLNFFL--WGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFG 457 (628)
T ss_pred cCCcchh-----------hHHhhhhhcchHHHHHHHHHHHHh--hcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhh
Confidence 4577884 467788888887665544322222 232221 11223344555566553 56777777
Q ss_pred hhhh------------hhcCCCchhhh---hhhhhccchhHHHH--HHHHHHHHHHhccCCCccChHHHHHHHHHHHHhh
Q psy11431 352 ARIY------------KSFGGEKWKSN---IILTSTLVPGVVFC--LFFVMNLIFWAKDSSAAVPFSTLLALVSLWVWVS 414 (590)
Q Consensus 352 ~~ly------------k~~~g~~W~~~---~~lt~~l~P~~~~~--i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~vs 414 (590)
-|-= ++...++|..+ .++-+..+|.-... .++++|.+ |.+ .--.=||-++.++.+-...|
T Consensus 458 ~kk~~~e~PvrTNqIpRqIP~q~~y~~~~~~ili~GilPFg~ifIELfFI~~Si-W~~--qfYY~FGFLFlvfiiLvvtc 534 (628)
T KOG1278|consen 458 FKKPAIEHPVRTNQIPRQIPEQPWYLNPIPSILIAGILPFGAIFIELFFILSSI-WLN--QFYYMFGFLFLVFIILVVTC 534 (628)
T ss_pred ccCCCCCCCcccCCCcccCCCCccccchhhHHHhhcccchHHHHHHHHHHHHHH-Hhh--hHHHHHHHHHHHHHHHHHHH
Confidence 6432 12334567653 34445556765333 34444443 544 22233566666666767777
Q ss_pred hhhhhhhhhhhcccCCCCCCCccCCCCCCCCCCcccccccceeeecccccceehhhhHHHHHHhhcccc--------hhh
Q psy11431 415 MPLTFIGSFFGFRKRAIEHPVRTNQIPRQIPEQSVYTQAIPGVIMGGVLPFGCIFIQLYFILSSIWSSQ--------TYY 486 (590)
Q Consensus 415 ~PL~~lG~~~g~~~~~~~~P~~~n~ipR~IP~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~s~W~~~--------~yy 486 (590)
.=.++++.|+-.- -.+ |+..+-..+.+|. .++|+++|-|+--.-.=+ +|
T Consensus 535 aeisIvl~Yf~LC--------~Ed-----------y~WwWRsF~~sG~---~avY~fiYsi~Y~~~kL~i~g~~s~~LY- 591 (628)
T KOG1278|consen 535 AEISIVLTYFQLC--------AED-----------YNWWWRSFLTSGS---SAVYVFIYSIFYFFTKLEISGFVSAVLY- 591 (628)
T ss_pred HHHHHHHHHHHHH--------hcc-----------cceeeeeeeccCc---chhhHHHHHHhhhheeeeecccchhHHH-
Confidence 7888888888642 222 2333344666776 899999987764433211 34
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh
Q psy11431 487 MFGFLFLVFLILIITCSETTILLCY 511 (590)
Q Consensus 487 ~fgfL~~~~~ilii~~a~vsIi~~Y 511 (590)
||.-++..++..+.|..+.-..+|
T Consensus 592 -fgYsli~~~~~~l~tGtIGF~a~~ 615 (628)
T KOG1278|consen 592 -FGYSLIISLLFFLLTGTIGFLAAF 615 (628)
T ss_pred -HHHHHHHHHHHHHHhccHHHHHHH
Confidence 444444444445555555544443
No 10
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=52.06 E-value=35 Score=31.13 Aligned_cols=24 Identities=21% Similarity=0.685 Sum_probs=14.4
Q ss_pred cCCCchhhhhhhhhccchhHHHHHH
Q psy11431 358 FGGEKWKSNIILTSTLVPGVVFCLF 382 (590)
Q Consensus 358 ~~g~~W~~~~~lt~~l~P~~~~~i~ 382 (590)
++.++|++..+ .+..+|..+..++
T Consensus 109 ~g~r~~~~~~~-~s~~~~~~i~~~F 132 (141)
T PF07331_consen 109 LGERRWLRLLL-ISVVFAAVIYFVF 132 (141)
T ss_pred hCCCcHHHHHH-HHHHHHHHHHHHH
Confidence 34778998654 4555566655444
No 11
>PF13347 MFS_2: MFS/sugar transport protein
Probab=51.02 E-value=76 Score=34.31 Aligned_cols=81 Identities=16% Similarity=0.234 Sum_probs=44.4
Q ss_pred hhcccceEEeccccCCCCCccchheee--ccchHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccchhhhh
Q psy11431 276 QEEFGWKLVHGDVFRPPRKGMLLSVLL--GSGIQILMMTMVTLAFACLGFLSPANRGALMTCAMVMYVCLGTPAGYISAR 353 (590)
Q Consensus 276 ~ee~GWKlvhgDVFR~P~~~~lLs~lv--G~G~Qll~~~~~~l~~a~~g~~~p~~rg~l~t~~i~~y~~~~~i~Gy~s~~ 353 (590)
++..++|..-..+||-|+...++.+.. ..|..+......-..-..+| .....+.....+.+.++++....++
T Consensus 209 ~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~------~~~~~~~~~~~~~~~~~v~~~~~~~ 282 (428)
T PF13347_consen 209 EKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLG------NEGLISIFMLIFFVASIVGSPLWGR 282 (428)
T ss_pred ccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhc------CchhhHHHHHHHHHHHHHHHHHHHH
Confidence 344566665677888776655533322 23333322222111112222 1234555555677778888888889
Q ss_pred hhhhcCCCc
Q psy11431 354 IYKSFGGEK 362 (590)
Q Consensus 354 lyk~~~g~~ 362 (590)
+-|.+|.++
T Consensus 283 l~~r~gk~~ 291 (428)
T PF13347_consen 283 LSKRFGKKK 291 (428)
T ss_pred HHHHcccee
Confidence 999886655
No 12
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=50.38 E-value=13 Score=27.52 Aligned_cols=35 Identities=9% Similarity=0.124 Sum_probs=30.2
Q ss_pred CCchhhhhhhhhccchhHHHHHHHHHHHHHHhccC
Q psy11431 360 GEKWKSNIILTSTLVPGVVFCLFFVMNLIFWAKDS 394 (590)
Q Consensus 360 g~~W~~~~~lt~~l~P~~~~~i~~~lN~i~~~~~S 394 (590)
.+.||...+++..++|.+..+....--+++|..+-
T Consensus 2 ~~El~~flfl~~~l~PiLsV~~V~~YGF~vWm~Q~ 36 (42)
T TIGR02973 2 RMELNTFLFLAAVIWPVLSVITVGGYGFAVWMYQI 36 (42)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999988888888887653
No 13
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=50.01 E-value=54 Score=32.45 Aligned_cols=45 Identities=22% Similarity=0.446 Sum_probs=24.9
Q ss_pred HHHHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccchhhhhhhhhcC
Q psy11431 312 TMVTLAFACLGFLSPANRGALMTCAMVMYVCLGTPAGYISARIYKSFG 359 (590)
Q Consensus 312 ~~~~l~~a~~g~~~p~~rg~l~t~~i~~y~~~~~i~Gy~s~~lyk~~~ 359 (590)
.+.+++.+.++++++.++... .+..-++.++++|.+-..+++.+.
T Consensus 91 ~if~~~~gi~~~f~~~~~~~~---gi~tli~~~i~~G~~~~~~~~~i~ 135 (206)
T PF06570_consen 91 GIFSLLFGIMGFFSPKNSNQY---GIITLILVSIVGGLVFYFIFKYIY 135 (206)
T ss_pred HHHHHHHHHHHHHhhcccccc---cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566677887777433221 222333455667766666665543
No 14
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=49.57 E-value=43 Score=37.95 Aligned_cols=51 Identities=12% Similarity=0.256 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHHHHHH--hhccCCCCch-----hHHH----HHHHHHHHhhcccchhhhhh
Q psy11431 304 SGIQILMMTMVTLAFAC--LGFLSPANRG-----ALMT----CAMVMYVCLGTPAGYISARI 354 (590)
Q Consensus 304 ~G~Qll~~~~~~l~~a~--~g~~~p~~rg-----~l~t----~~i~~y~~~~~i~Gy~s~~l 354 (590)
.|+-++....+.+++.. -|.++..+.| .+++ ...++|.+.|++-|++++++
T Consensus 265 Ag~~~l~~~~~i~~l~lP~~g~Lr~~~tG~l~~Sp~~~siv~~i~~~Fli~GivyG~~~g~i 326 (508)
T PRK11339 265 AGVVSLLFIAAIALMVIPENGILRDPINHTVMPSPFIKGIVPLIILFFFVVSLAYGIATRTI 326 (508)
T ss_pred HHHHHHHHHHHHHHHHccCCcccccCCCCCccCChHHHhHHHHHHHHHHHHHHHHhhhcccc
Confidence 45555554444333321 4444422224 5666 66677888888888887754
No 15
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=44.42 E-value=2.6e+02 Score=32.51 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=37.1
Q ss_pred eccchHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccchhhhhhhhhcCCCchhhhhhhhhcc
Q psy11431 302 LGSGIQILMMTMVTLAFACLGFLSPANRGALMTCAMVMYVCLGTPAGYISARIYKSFGGEKWKSNIILTSTL 373 (590)
Q Consensus 302 vG~G~Qll~~~~~~l~~a~~g~~~p~~rg~l~t~~i~~y~~~~~i~Gy~s~~lyk~~~g~~W~~~~~lt~~l 373 (590)
+|.|+|.+.... .+ -..+.+.|+.-....-+.++....+++.++.++.. ..+|+++..+...+
T Consensus 143 vgaG~~~~~~~~----is--El~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~---~~~WRw~~~~~~i~ 205 (599)
T PF06609_consen 143 VGAGVQELAALA----IS--ELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA---HSGWRWIFYIFIIW 205 (599)
T ss_pred HhhHHHHHHHHH----HH--HhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc---CCCcchHHHHHHHH
Confidence 367887754322 22 22344556654444455566677778888777654 35799877665543
No 16
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=43.34 E-value=15 Score=27.86 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=30.5
Q ss_pred CCCchhhhhhhhhccchhHHHHHHHHHHHHHHhccC
Q psy11431 359 GGEKWKSNIILTSTLVPGVVFCLFFVMNLIFWAKDS 394 (590)
Q Consensus 359 ~g~~W~~~~~lt~~l~P~~~~~i~~~lN~i~~~~~S 394 (590)
+.+.||...+++..++|.+..+....--+++|..+-
T Consensus 6 k~~El~~flfl~v~l~PiLsV~~Vg~YGF~vWm~Q~ 41 (47)
T TIGR02972 6 RSNELKALGFIIVVLFPILSVAGIGGYGFIIWMIQA 41 (47)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999999999988888888887653
No 17
>PF08055 Trp_leader1: Tryptophan leader peptide; InterPro: IPR012638 This family consists of the tryptophan (trp) leader peptides. Tryptophan accumulation is the principal event resulting in down regulation of transcription of the structural genes of the trp operon. The leader peptide of the trp operon forms mutually exclusive secondary structures that would either result in the termination of transcription of the trp operon when tryptophan is in plentiful supply or vice versa [].
Probab=43.21 E-value=10 Score=22.50 Aligned_cols=8 Identities=38% Similarity=1.631 Sum_probs=5.9
Q ss_pred Ccceeece
Q psy11431 518 DYHWWWRS 525 (590)
Q Consensus 518 dy~WwW~S 525 (590)
--||||.+
T Consensus 6 ~~nwwwta 13 (18)
T PF08055_consen 6 IQNWWWTA 13 (18)
T ss_pred ccceeeec
Confidence 35799975
No 18
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=43.18 E-value=16 Score=28.85 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=30.3
Q ss_pred CCCchhhhhhhhhccchhHHHHHHHHHHHHHHhcc
Q psy11431 359 GGEKWKSNIILTSTLVPGVVFCLFFVMNLIFWAKD 393 (590)
Q Consensus 359 ~g~~W~~~~~lt~~l~P~~~~~i~~~lN~i~~~~~ 393 (590)
+++.||...+++..++|.+..++...--+++|..+
T Consensus 14 k~~E~~~flfl~~~l~PiL~v~~Vg~YGF~VWm~Q 48 (56)
T PF06796_consen 14 KRSELKAFLFLAVVLFPILAVAFVGGYGFIVWMYQ 48 (56)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999988888888764
No 19
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=38.15 E-value=1.3e+02 Score=30.80 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=15.0
Q ss_pred HHHHHHHhhcccchhhhhhhhhc
Q psy11431 336 AMVMYVCLGTPAGYISARIYKSF 358 (590)
Q Consensus 336 ~i~~y~~~~~i~Gy~s~~lyk~~ 358 (590)
....+.+.+.++..+++++-+..
T Consensus 257 ~~~~~~~~~~~~~~~~g~l~~r~ 279 (379)
T TIGR00881 257 AFTLYELGGLVGTLLAGWLSDKL 279 (379)
T ss_pred HHHHHHHHcchhHHHHHHHHHHH
Confidence 34455567777777777776644
No 20
>COG5393 Predicted membrane protein [Function unknown]
Probab=37.37 E-value=43 Score=30.41 Aligned_cols=44 Identities=30% Similarity=0.469 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHhhc----------cCCCCch-hHHHHHHHHHHHhhcccch
Q psy11431 306 IQILMMTMVTLAFACLGF----------LSPANRG-ALMTCAMVMYVCLGTPAGY 349 (590)
Q Consensus 306 ~Qll~~~~~~l~~a~~g~----------~~p~~rg-~l~t~~i~~y~~~~~i~Gy 349 (590)
.|+++|..++++++.+|. +.|.+|= +......++|+++.+.+++
T Consensus 48 l~lllm~gLtl~fa~~~lmsL~vLvi~~f~~tyRl~a~~a~~~vl~vl~~i~ciW 102 (131)
T COG5393 48 LQLLLMAGLTLLFAAFGLMSLMVLVIWAFDPTYRLNAMIATTAVLLVLALIGCIW 102 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555554443 5677774 7777778888888877766
No 21
>KOG0569|consensus
Probab=37.35 E-value=31 Score=38.94 Aligned_cols=216 Identities=13% Similarity=0.166 Sum_probs=0.0
Q ss_pred hhhhhhhccCCCCcchhhcccceEEec-----------cccCCC--CCccchheeeccchHHHHHHHHHH----HHHHhh
Q psy11431 260 HKDIARYNQIDSGEDVQEEFGWKLVHG-----------DVFRPP--RKGMLLSVLLGSGIQILMMTMVTL----AFACLG 322 (590)
Q Consensus 260 r~D~~~Yn~~~~~~~~~ee~GWKlvhg-----------DVFR~P--~~~~lLs~lvG~G~Qll~~~~~~l----~~a~~g 322 (590)
||.+++|-..++++++.||.-+..=.. |++|-| +.+.+....+..+.|+-..-.+.. ++--.|
T Consensus 222 ~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG 301 (485)
T KOG0569|consen 222 RKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAG 301 (485)
T ss_pred HHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcC
Q ss_pred ccCCCCchhHHHHHHHHHHHhhcccchhhhhhhhhcCCCchhhhhhhhhccchhHHHHHHHHHHHHHHhccCCCccChHH
Q psy11431 323 FLSPANRGALMTCAMVMYVCLGTPAGYISARIYKSFGGEKWKSNIILTSTLVPGVVFCLFFVMNLIFWAKDSSAAVPFST 402 (590)
Q Consensus 323 ~~~p~~rg~l~t~~i~~y~~~~~i~Gy~s~~lyk~~~g~~W~~~~~lt~~l~P~~~~~i~~~lN~i~~~~~Ss~aipf~t 402 (590)
+++..--..-...-++.++++++|.+.-=|. |+||....-+..+.+-.+++.+...++-... ..++...
T Consensus 302 -~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-----gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~y~~ 370 (485)
T KOG0569|consen 302 -FTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-----GRRPLLLISLSLMAVALLLMSIALFLSNSFG-----SWLSYLC 370 (485)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHH
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcccCCCCCCCccCCCCCCCCCCcccccccceeeecccccceehhhhHHHHHHhhccc
Q psy11431 403 LLALVSLWVWVSMPLTFIGSFFGFRKRAIEHPVRTNQIPRQIPEQSVYTQAIPGVIMGGVLPFGCIFIQLYFILSSIWSS 482 (590)
Q Consensus 403 i~~l~~lw~~vs~PL~~lG~~~g~~~~~~~~P~~~n~ipR~IP~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~s~W~~ 482 (590)
+..++..-+..++=+.=+.-+++ +--.|+++ +....-+++.....+-++.-+.
T Consensus 371 i~~~~~~~~~f~~G~gpi~~fi~---------------aELf~~~~----R~aa~s~~~~~~w~~~fiv~~~-------- 423 (485)
T KOG0569|consen 371 IAAIFLFIISFAIGPGPIPWFIG---------------AELFPQSA----RSAAQSVATAVNWLSNFIVGFA-------- 423 (485)
T ss_pred HHHHHHHHHhhhcCCCchhHHHH---------------HHhCCccc----hHHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy11431 483 QTYYMFGFLFLVFLILIITCSETTILLCYFHL 514 (590)
Q Consensus 483 ~~yy~fgfL~~~~~ilii~~a~vsIi~~Y~~L 514 (590)
+..++..+=-.+.++.++.+.+..+.+|..|
T Consensus 424 -fp~l~~~~g~~~filF~i~~~~~~i~~~~~l 454 (485)
T KOG0569|consen 424 -FPPLQNVIGPYVFILFVIPLAIFLIYLYRYL 454 (485)
T ss_pred -HHHHHHHhcchhhHHHHHHHHHHHHHHHHhC
No 22
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=34.81 E-value=2.8e+02 Score=31.59 Aligned_cols=88 Identities=15% Similarity=0.197 Sum_probs=42.0
Q ss_pred HHHHHHHHhhcccchhhhhhhhhcCCCchhhhhhhhhccchhHHHHHHHHHHHHHHhccCC-------------CccChH
Q psy11431 335 CAMVMYVCLGTPAGYISARIYKSFGGEKWKSNIILTSTLVPGVVFCLFFVMNLIFWAKDSS-------------AAVPFS 401 (590)
Q Consensus 335 ~~i~~y~~~~~i~Gy~s~~lyk~~~g~~W~~~~~lt~~l~P~~~~~i~~~lN~i~~~~~Ss-------------~aipf~ 401 (590)
...++|.+.|++=|+.+|++ | +.++.-+.+--.---....++..++...++.+.+.|. .+..+.
T Consensus 302 iI~l~F~i~GivYG~~sG~i-k--s~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~~~~ 378 (502)
T PF03806_consen 302 IIFLFFLIPGIVYGIASGTI-K--SDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSLGLP 378 (502)
T ss_pred HHHHHHHHHHHHHhhhhcee-c--CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhcCCC
Confidence 34445666666666666643 1 1223333222222222334455555556666655543 223334
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhh
Q psy11431 402 TLLALVSLWVWVSMPLTFIGSFFG 425 (590)
Q Consensus 402 ti~~l~~lw~~vs~PL~~lG~~~g 425 (590)
.+..++.+-++.++=-.++||--+
T Consensus 379 ~~~l~i~fill~a~iNLfi~S~Sa 402 (502)
T PF03806_consen 379 GIPLIIGFILLTAFINLFIGSASA 402 (502)
T ss_pred cHHHHHHHHHHHHHHHHhhhcchh
Confidence 444445555555555566666544
No 23
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=33.95 E-value=5.9e+02 Score=28.56 Aligned_cols=161 Identities=17% Similarity=0.279 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh--------hhhccCCCC--cchh--h-cccceEEeccccCCCCCccchheeeccc
Q psy11431 239 NSLMIVLFLSGMVAMIILRTLHKDI--------ARYNQIDSG--EDVQ--E-EFGWKLVHGDVFRPPRKGMLLSVLLGSG 305 (590)
Q Consensus 239 NS~~ivl~L~~~v~~Il~R~lr~D~--------~~Yn~~~~~--~~~~--e-e~GWKlvhgDVFR~P~~~~lLs~lvG~G 305 (590)
..+..--.++.++++++++.+|.+= .+|..+..| ++++ | .+.|+.+..-|+|-| .+..+
T Consensus 186 ~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk---~iW~l----- 257 (448)
T COG2271 186 AAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNK---LIWLL----- 257 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcCh---HHHHH-----
Confidence 3445555556667777777776432 233333222 1111 2 355887777777765 33222
Q ss_pred hHHHHHHHHHHHHHHh--hc-------cCCCCchhH--HHHHHHHHHHhhcccchhhhhhh-hhcCCCchhhhhhhhhcc
Q psy11431 306 IQILMMTMVTLAFACL--GF-------LSPANRGAL--MTCAMVMYVCLGTPAGYISARIY-KSFGGEKWKSNIILTSTL 373 (590)
Q Consensus 306 ~Qll~~~~~~l~~a~~--g~-------~~p~~rg~l--~t~~i~~y~~~~~i~Gy~s~~ly-k~~~g~~W~~~~~lt~~l 373 (590)
.+.-+++... |+ ++..+.=++ ...++.+|=..|+.+.-..|.+- |.|+|+|+-.+.+....
T Consensus 258 ------a~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~- 330 (448)
T COG2271 258 ------ALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL- 330 (448)
T ss_pred ------HHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHH-
Confidence 2222333221 11 111111122 23445556555555555555443 55778887655443221
Q ss_pred chhHHHHHHHHHHHH-HHhccCCCccChHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy11431 374 VPGVVFCLFFVMNLI-FWAKDSSAAVPFSTLLALVSLWVWVSMPLTFIGSFFG 425 (590)
Q Consensus 374 ~P~~~~~i~~~lN~i-~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~lG~~~g 425 (590)
..+-++ .|.. +..-+.-....++.+=++|.-|=.++|-...
T Consensus 331 ---------i~~~~~~~w~~--~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~ 372 (448)
T COG2271 331 ---------ITASLVLYWLA--PNGSYLLDAILLFIIGFLIYGPQMLIGLAAA 372 (448)
T ss_pred ---------HHHHHHHHHcC--CCccHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 111111 2222 2224455666677777788889877776543
No 24
>TIGR00895 2A0115 benzoate transport.
Probab=33.49 E-value=59 Score=33.71 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=16.5
Q ss_pred HHHHHHHHhhcccchhhhhhhhhcCCC
Q psy11431 335 CAMVMYVCLGTPAGYISARIYKSFGGE 361 (590)
Q Consensus 335 ~~i~~y~~~~~i~Gy~s~~lyk~~~g~ 361 (590)
.....+.+++.++..+++++-+.++.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (398)
T TIGR00895 289 TGGALFNFGGVIGSIIFGWLADRLGPR 315 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 334455566677777777776666543
No 25
>KOG2290|consensus
Probab=28.70 E-value=4.4e+02 Score=29.61 Aligned_cols=11 Identities=18% Similarity=0.262 Sum_probs=6.9
Q ss_pred ccchHHHHHHH
Q psy11431 303 GSGIQILMMTM 313 (590)
Q Consensus 303 G~G~Qll~~~~ 313 (590)
-+|.|+.+.+.
T Consensus 517 Pa~sQ~Gila~ 527 (652)
T KOG2290|consen 517 PAGSQFGILAC 527 (652)
T ss_pred CcccccchHHH
Confidence 36888865443
No 26
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=28.15 E-value=37 Score=35.29 Aligned_cols=90 Identities=19% Similarity=0.407 Sum_probs=50.8
Q ss_pred hhhhhhhhhhhhcccCCCCCCCccCCCCCCCCCCcccccccceeeecccccceehhhhHHHHHHhhcccc--hhhhHHHH
Q psy11431 414 SMPLTFIGSFFGFRKRAIEHPVRTNQIPRQIPEQSVYTQAIPGVIMGGVLPFGCIFIQLYFILSSIWSSQ--TYYMFGFL 491 (590)
Q Consensus 414 s~PL~~lG~~~g~~~~~~~~P~~~n~ipR~IP~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~s~W~~~--~yy~fgfL 491 (590)
.+| ++++-++|.. .++.+=..|| +|-++- .-..+|++|-. =+--+++-+|+.+ .|++-||+
T Consensus 152 ~i~-~fla~~~G~~--------~v~~il~~iP--~~v~~G--l~vaggmLPAv----GfAmLl~~m~~k~~~~ff~lGF~ 214 (265)
T TIGR00822 152 AIP-ALIVALVSQS--------AVQAMLKAIP--EVVTHG--LQIAGGIIVVV----GYAMVLRMMFKAYLMPFFYLGFL 214 (265)
T ss_pred HHH-HHHHHHcCHH--------HHHHHHHHCH--HHHHHH--HHHHHhhHHHH----HHHHHHHHHhhcchHHHHHHHHH
Confidence 344 4888888832 1222223444 466653 35689999974 4445567788766 68889999
Q ss_pred HHHHH-HHHHHHHHHH--HHhhhhcccCCCcc
Q psy11431 492 FLVFL-ILIITCSETT--ILLCYFHLCAEDYH 520 (590)
Q Consensus 492 ~~~~~-ilii~~a~vs--Ii~~Y~~L~~Edy~ 520 (590)
+.++. +=++.++-+. +...|+..+...||
T Consensus 215 laayl~l~~l~iAiig~~~A~i~~~~~~~~~~ 246 (265)
T TIGR00822 215 FAAYTDFSLLAFGAVGGAGALLYIQLNPKSHR 246 (265)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHhcccccc
Confidence 88876 3333333333 33334444443333
No 27
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=27.97 E-value=94 Score=27.19 Aligned_cols=6 Identities=0% Similarity=0.346 Sum_probs=2.6
Q ss_pred Hhhhhh
Q psy11431 258 TLHKDI 263 (590)
Q Consensus 258 ~lr~D~ 263 (590)
...||.
T Consensus 23 vaa~~~ 28 (95)
T PF07172_consen 23 VAAREL 28 (95)
T ss_pred hhhHHh
Confidence 334444
No 28
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=27.30 E-value=1.5e+02 Score=28.86 Aligned_cols=26 Identities=15% Similarity=0.451 Sum_probs=17.2
Q ss_pred HHHHHHhhhhhhhhhhhhhcc--cCCCC
Q psy11431 407 VSLWVWVSMPLTFIGSFFGFR--KRAIE 432 (590)
Q Consensus 407 ~~lw~~vs~PL~~lG~~~g~~--~~~~~ 432 (590)
+.+...+.+-..++|+++|.| ++++|
T Consensus 158 ~~~~~~~~~v~a~lG~~lG~kllkKHF~ 185 (186)
T PF09605_consen 158 LIIIIIITFVGALLGALLGKKLLKKHFE 185 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444667788999999976 44443
No 29
>PF12271 Chs3p: Chitin synthase III catalytic subunit; InterPro: IPR022057 This family of proteins is found in eukaryotes. Proteins in this family are typically between 288 and 332 amino acids in length. This family is the catalytic domain of chitin synthase III. Chitin is a major component of fungal cell walls and this enzyme is responsible for its formation.
Probab=26.49 E-value=6.8e+02 Score=26.50 Aligned_cols=121 Identities=20% Similarity=0.264 Sum_probs=68.5
Q ss_pred cchHHHHHHHHH---HHHHHhhccCCCCchhHHHHHHHH--HHHhhcccchhhhhhhhhcCC---Cchhhhhhhhhccch
Q psy11431 304 SGIQILMMTMVT---LAFACLGFLSPANRGALMTCAMVM--YVCLGTPAGYISARIYKSFGG---EKWKSNIILTSTLVP 375 (590)
Q Consensus 304 ~G~Qll~~~~~~---l~~a~~g~~~p~~rg~l~t~~i~~--y~~~~~i~Gy~s~~lyk~~~g---~~W~~~~~lt~~l~P 375 (590)
+.+|+....... ++-+.+|+.- ...|+..+..++- =++.-+.+||+|--..|.+.| .+-.......-.++|
T Consensus 118 tAi~~g~~~a~~w~Ll~Ng~vgfQl-~eDGT~~Sl~ll~~ss~~~f~~t~~isl~Tf~~w~~~~~~~~~~~Lfvl~~l~p 196 (293)
T PF12271_consen 118 TAIQIGLISATCWCLLINGFVGFQL-WEDGTPLSLWLLRGSSLILFIGTFYISLDTFKSWTGYLSPTNTIALFVLYYLLP 196 (293)
T ss_pred HHHHHHHHHHHHHHHHHhhhheeee-ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcchhHHHHHHHH
Confidence 456665544332 3335566654 4667666554332 122334456666666666544 111112344455679
Q ss_pred hHHHHHHHHHHHHHHhccCCCccChHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy11431 376 GVVFCLFFVMNLIFWAKDSSAAVPFSTLLALVSLWVWVSMPLTFIGSFFG 425 (590)
Q Consensus 376 ~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~lG~~~g 425 (590)
++.+.+++++-.++...-=-.--|.+.++.-.+++..-.+=+-.++-.++
T Consensus 197 ~i~l~~Y~v~q~~lv~~vL~e~wp~g~i~~~~~fFv~gQv~~y~~S~~IC 246 (293)
T PF12271_consen 197 AIFLVIYVVLQLILVLRVLGERWPLGYILLGVFFFVAGQVFLYVFSTHIC 246 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 99999999988876655444566778877776666655554444444443
No 30
>TIGR00893 2A0114 d-galactonate transporter.
Probab=26.23 E-value=1.4e+02 Score=30.49 Aligned_cols=24 Identities=8% Similarity=-0.014 Sum_probs=13.8
Q ss_pred HHHHhhcccchhhhhhhhhcCCCc
Q psy11431 339 MYVCLGTPAGYISARIYKSFGGEK 362 (590)
Q Consensus 339 ~y~~~~~i~Gy~s~~lyk~~~g~~ 362 (590)
.+.+.+.++....+++.+.++.++
T Consensus 259 ~~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 259 LPGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555566666666666665554
No 31
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=25.50 E-value=91 Score=32.08 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=25.4
Q ss_pred HhhhhcccCCCcceeeceecccchhHHHHHHHhhheeee
Q psy11431 508 LLCYFHLCAEDYHWWWRSFITSGFTSIYLFIYCIHYFET 546 (590)
Q Consensus 508 i~~Y~~L~~Edy~WwW~SF~~~gs~~~y~flYsi~y~~~ 546 (590)
+.||-+ +++|+=-+-++....-.+++++..|+||+--
T Consensus 217 vGT~~~--A~~~~giY~~wv~~~l~a~~~~~rs~yy~~m 253 (256)
T PF09788_consen 217 VGTWTY--AKTYGGIYVSWVGLFLIALICLIRSIYYCCM 253 (256)
T ss_pred hhhHHH--HhhcCcEeHHHHHHHHHHHHHHHHhheeEEE
Confidence 445444 4555445566666777899999999999743
No 32
>MTH00033 CYTB cytochrome b; Provisional
Probab=25.19 E-value=1.5e+02 Score=32.58 Aligned_cols=98 Identities=18% Similarity=0.303 Sum_probs=61.1
Q ss_pred hhhhHHHHHH-HHHHHHHHHHHHHHHhhhhccc-------------CCCcceeeceecccchhHHHHHHH-----hhhee
Q psy11431 484 TYYMFGFLFL-VFLILIITCSETTILLCYFHLC-------------AEDYHWWWRSFITSGFTSIYLFIY-----CIHYF 544 (590)
Q Consensus 484 ~yy~fgfL~~-~~~ilii~~a~vsIi~~Y~~L~-------------~Edy~WwW~SF~~~gs~~~y~flY-----si~y~ 544 (590)
..+-+|.|+. ++++.+++.. .+..|++=+ .-+++|-.|+.-.-|++.+++.+| .+||-
T Consensus 26 ~~w~~Gsll~~~~~~qiiTGi---~La~~Y~p~~~~Af~Sv~~i~~~v~~Gw~iR~~H~~gAs~~f~~~ylHi~R~~~~g 102 (383)
T MTH00033 26 YWWNFGSLLCLCLGIQILTGV---LLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYG 102 (383)
T ss_pred hHhhHHHHHHHHHHHHHHHHH---HHHhhhcCCCcchHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3456788764 4444444432 233333322 337899999999999998888776 45554
Q ss_pred eeeecccccchhhHHHHHHHHHHHHHHHHhcchHHHHHHH
Q psy11431 545 ETRLNISDASSVFLYFGYTLIMVFLFFIMTGMCEMLVSLV 584 (590)
Q Consensus 545 ~~~~~~~g~~~~~lyf~y~~l~~~~~~l~~GtiGflas~~ 584 (590)
-.|.+....+..++++.-+...=...-|-.|-.+|.++-+
T Consensus 103 sY~r~~~W~~Gv~ll~l~m~~aF~GYvLpw~qms~w~~~V 142 (383)
T MTH00033 103 GYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATV 142 (383)
T ss_pred cccChHHHHHhHHHHHHHHHHHHhhhcccccchhhHHHHH
Confidence 4454555666677777666666556666667677766544
No 33
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=24.09 E-value=2.1e+02 Score=33.07 Aligned_cols=28 Identities=25% Similarity=0.206 Sum_probs=23.0
Q ss_pred cChHHHHHHHHHHHHhhhhhhhhhhhhh
Q psy11431 398 VPFSTLLALVSLWVWVSMPLTFIGSFFG 425 (590)
Q Consensus 398 ipf~ti~~l~~lw~~vs~PL~~lG~~~g 425 (590)
-+....+.++++-++.++||.++|...+
T Consensus 323 ~~~~g~~~l~~~gLG~~~Plll~~~~~~ 350 (571)
T PRK00293 323 DLLLGGLTLYLLALGMGLPLILITTFGN 350 (571)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888999999999999998754
No 34
>TIGR00901 2A0125 AmpG-related permease.
Probab=23.20 E-value=2.9e+02 Score=28.60 Aligned_cols=175 Identities=11% Similarity=-0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCcchhhcccceEEeccccCCCCCccchheeeccchHHHHHHHHHHHHHH
Q psy11431 241 LMIVLFLSGMVAMIILRTLHKDIARYNQIDSGEDVQEEFGWKLVHGDVFRPPRKGMLLSVLLGSGIQILMMTMVTLAFAC 320 (590)
Q Consensus 241 ~~ivl~L~~~v~~Il~R~lr~D~~~Yn~~~~~~~~~ee~GWKlvhgDVFR~P~~~~lLs~lvG~G~Qll~~~~~~l~~a~ 320 (590)
..++..+..+++.++...+.||-.+-++..+++..+...++| +++|.|..+.++..++..-+..+........+..
T Consensus 159 ~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (356)
T TIGR00901 159 IFFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIR----EFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTL 234 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHH----HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhccCCCCchhHHHHHHHHHHHhhcccchhhhhhhhhcCCCchhhhhhhhhccchhHHHHHHHHHHHHHHhccCCC----
Q psy11431 321 LGFLSPANRGALMTCAMVMYVCLGTPAGYISARIYKSFGGEKWKSNIILTSTLVPGVVFCLFFVMNLIFWAKDSSA---- 396 (590)
Q Consensus 321 ~g~~~p~~rg~l~t~~i~~y~~~~~i~Gy~s~~lyk~~~g~~W~~~~~lt~~l~P~~~~~i~~~lN~i~~~~~Ss~---- 396 (590)
.-....-+....-....+.-++.+++++..++++.+.++.+++ +..+.+.-++....+..+ .+..
T Consensus 235 ~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~----l~~~~~~~~~~~~~~~~~-------~~~~~~~~ 303 (356)
T TIGR00901 235 FLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYA----LLLFGIVQALTNAGFVWL-------ASNGHHDG 303 (356)
T ss_pred HHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHHHHHHHH-------HhcCcccc
Q ss_pred ---ccChHHHHHHHHHHHHhhhhhhhhhhhhhcccCC
Q psy11431 397 ---AVPFSTLLALVSLWVWVSMPLTFIGSFFGFRKRA 430 (590)
Q Consensus 397 ---aipf~ti~~l~~lw~~vs~PL~~lG~~~g~~~~~ 430 (590)
......+...++..++...-....-+++....++
T Consensus 304 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~ 340 (356)
T TIGR00901 304 ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNP 340 (356)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC
No 35
>MTH00119 CYTB cytochrome b; Provisional
Probab=23.08 E-value=2e+02 Score=31.45 Aligned_cols=98 Identities=17% Similarity=0.262 Sum_probs=61.0
Q ss_pred hhhhHHHHHH-HHHHHHHHHHHHHHHhhhhcc-------------cCCCcceeeceecccchhHHHHHHH-----hhhee
Q psy11431 484 TYYMFGFLFL-VFLILIITCSETTILLCYFHL-------------CAEDYHWWWRSFITSGFTSIYLFIY-----CIHYF 544 (590)
Q Consensus 484 ~yy~fgfL~~-~~~ilii~~a~vsIi~~Y~~L-------------~~Edy~WwW~SF~~~gs~~~y~flY-----si~y~ 544 (590)
..|-+|.++. ++++.+++.. .+..|++= +.-+++|.-|+.-.-|++.+++.+| .++|-
T Consensus 30 ~~~~~G~ll~~~~~~qiitG~---~L~~~Y~p~~~~a~~Sv~~i~~~v~~G~~iR~~H~~ga~~~~~~~~lH~~r~~~~g 106 (380)
T MTH00119 30 AWWNFGSLLGLCLITQILTGL---FLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYG 106 (380)
T ss_pred hhhHHHHHHHHHHHHHHHHHH---HHHHHhcCCchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567887764 4444544443 23333333 2346899999999888888888766 34554
Q ss_pred eeeecccccchhhHHHHHHHHHHHHHHHHhcchHHHHHHH
Q psy11431 545 ETRLNISDASSVFLYFGYTLIMVFLFFIMTGMCEMLVSLV 584 (590)
Q Consensus 545 ~~~~~~~g~~~~~lyf~y~~l~~~~~~l~~GtiGflas~~ 584 (590)
-.|.+....+..++++.-+...=....|-.|-.||.|+-.
T Consensus 107 sy~~~~~W~~Gv~l~~l~~~~~f~Gy~Lpw~q~s~wa~~v 146 (380)
T MTH00119 107 SYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATV 146 (380)
T ss_pred eecccchhhhhhHHHHHHHHHHHHhcccchhhhhhHHHHH
Confidence 4555666666777777666665555556666666655433
No 36
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.38 E-value=86 Score=31.00 Aligned_cols=29 Identities=17% Similarity=0.613 Sum_probs=17.3
Q ss_pred CCCcceeeceecccch-hHHHHHHHhhhee
Q psy11431 516 AEDYHWWWRSFITSGF-TSIYLFIYCIHYF 544 (590)
Q Consensus 516 ~Edy~WwW~SF~~~gs-~~~y~flYsi~y~ 544 (590)
.+...+||+.+..+.. ..+++.++.+..+
T Consensus 140 ~~~r~~~~k~~~~~~~~~~~w~~~~~~~~~ 169 (206)
T PF06570_consen 140 KKKRPSWWKYILISVLAMVLWIVIFVLTSF 169 (206)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556689999875443 4445555554444
No 37
>cd00284 Cytochrome_b_N Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Probab=22.15 E-value=1.1e+02 Score=30.43 Aligned_cols=98 Identities=17% Similarity=0.252 Sum_probs=56.8
Q ss_pred hhhhHHHHHH-HHHHHHHHHHHHHHHhhhhcc-------------cCCCcceeeceecccchhHHHHHHHh-----hhee
Q psy11431 484 TYYMFGFLFL-VFLILIITCSETTILLCYFHL-------------CAEDYHWWWRSFITSGFTSIYLFIYC-----IHYF 544 (590)
Q Consensus 484 ~yy~fgfL~~-~~~ilii~~a~vsIi~~Y~~L-------------~~Edy~WwW~SF~~~gs~~~y~flYs-----i~y~ 544 (590)
..|.+|+++. ++++.+++-... ..|++= ..-+++|-.|+.-.-|++.+++++|- ++|-
T Consensus 21 ~~~~~G~ll~~~~~iqiiTGi~L---a~~Y~p~~~~A~~Sv~~i~~ev~~G~liR~~H~~gas~~~~~~~lH~~r~~~~g 97 (200)
T cd00284 21 YWWNFGSLLGTCLVIQILTGVFL---AMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYG 97 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHcCChHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566787654 555555543322 223332 33468999999988888888887662 3332
Q ss_pred eee--ecccccchhhHHHHHHHHHHHHHHHHhcchHHHHHHH
Q psy11431 545 ETR--LNISDASSVFLYFGYTLIMVFLFFIMTGMCEMLVSLV 584 (590)
Q Consensus 545 ~~~--~~~~g~~~~~lyf~y~~l~~~~~~l~~GtiGflas~~ 584 (590)
..| .+....+..++++.-+...=...-|-.|-.||.+.-+
T Consensus 98 sY~~pre~~W~~G~~l~~l~~~~af~GY~Lpw~q~s~w~~~v 139 (200)
T cd00284 98 SYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATV 139 (200)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHH
Confidence 222 2445556666666665555555555566666655443
No 38
>PF12823 DUF3817: Domain of unknown function (DUF3817); InterPro: IPR023845 This domain is associated with, strictly bacterial integral membrane proteins. It occurs in proteins that on rare occasions are fused to transporter domains such as the major facilitator superfamily domain. Of three invariant residues, two occur as a His-Gly dipeptide in the middle of three predicted transmembrane helices.
Probab=21.96 E-value=18 Score=31.34 Aligned_cols=26 Identities=15% Similarity=0.390 Sum_probs=20.4
Q ss_pred cccccccceeeecccccceehhhhHH
Q psy11431 448 SVYTQAIPGVIMGGVLPFGCIFIQLY 473 (590)
Q Consensus 448 ~~y~~~~~~~l~~G~lPF~~i~iEl~ 473 (590)
.|-.+.....+++|++||++.+.|-.
T Consensus 63 rW~~~~~~~~llas~iPfg~f~~er~ 88 (92)
T PF12823_consen 63 RWSLKRTLLALLASVIPFGTFWFERW 88 (92)
T ss_pred CCChHHHHHHHHHHcccccHHHHHHH
Confidence 45555667788999999999988853
No 39
>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A. Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C
Probab=20.85 E-value=70 Score=28.21 Aligned_cols=38 Identities=18% Similarity=0.378 Sum_probs=29.2
Q ss_pred cccccCceecCCccccccccccccccccccCCCCCCHHHHHHHHHH
Q psy11431 20 QVVFGERIRPSPYKMNEDQTCTELCTKTYTPGNSDSEMKLALLKRG 65 (590)
Q Consensus 20 evL~Gdr~~~S~y~f~~d~~c~~lC~~~y~~~~~~~~~~~~~l~~~ 65 (590)
-+..||...-|||++..+.+|..+. .++++|++.|++.
T Consensus 57 wI~~GD~VlVsp~d~~~~~kg~Iv~--------r~~~~qv~~L~~~ 94 (99)
T TIGR00523 57 WIREGDVVIVKPWEFQGDDKCDIVW--------RYTKTQVEWLKRK 94 (99)
T ss_pred EecCCCEEEEEEccCCCCccEEEEE--------EcCHHHHHHHHHc
Confidence 3678999999999987677877765 2568899887753
No 40
>MTH00145 CYTB cytochrome b; Provisional
Probab=20.78 E-value=2e+02 Score=31.41 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=45.6
Q ss_pred CcceeeceecccchhHHHHHHH-----hhheeeeeecccccchhhHHHHHHHHHHHHHHHHhcchHHHHHHHh
Q psy11431 518 DYHWWWRSFITSGFTSIYLFIY-----CIHYFETRLNISDASSVFLYFGYTLIMVFLFFIMTGMCEMLVSLVG 585 (590)
Q Consensus 518 dy~WwW~SF~~~gs~~~y~flY-----si~y~~~~~~~~g~~~~~lyf~y~~l~~~~~~l~~GtiGflas~~~ 585 (590)
+++|-.|+.-.-|++.+++.+| .+||--.|......+..++++.-+...=...-|-.|-.+|.|+-+.
T Consensus 75 ~~Gw~iR~~H~~gas~~f~~~~lH~~r~~~~gsy~~~~~W~~Gv~l~~l~~~~af~GYvLpw~q~s~w~~~v~ 147 (379)
T MTH00145 75 NYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVI 147 (379)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHhHHHHHHHHHHHHHhhccCccccchHHHHHH
Confidence 7899999999999998888777 3455434444455556666666666555555566666666655443
No 41
>MTH00053 CYTB cytochrome b; Provisional
Probab=20.70 E-value=2e+02 Score=31.51 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=48.2
Q ss_pred CCCcceeeceecccchhHHHHHHH-----hhheeeeeecccccchhhHHHHHHHHHHHHHHHHhcchHHHHHHH
Q psy11431 516 AEDYHWWWRSFITSGFTSIYLFIY-----CIHYFETRLNISDASSVFLYFGYTLIMVFLFFIMTGMCEMLVSLV 584 (590)
Q Consensus 516 ~Edy~WwW~SF~~~gs~~~y~flY-----si~y~~~~~~~~g~~~~~lyf~y~~l~~~~~~l~~GtiGflas~~ 584 (590)
.-|++|.-|+.-.-|++.+++.+| .+||--.|.+....+..++++.-|...=...-|-.|=.||.++-+
T Consensus 73 ~v~~Gw~iR~~H~~gas~~f~~~ylHi~R~~~~gsy~~~~~W~~Gv~l~~l~m~~af~GYvLpw~qms~w~~tV 146 (381)
T MTH00053 73 DVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATV 146 (381)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCchHHHhhHHHHHHHHHHHHHHhccchhhhhhHHHHH
Confidence 447999999999999999988777 455654555555666677777666666555666666666665544
No 42
>PF10539 Dev_Cell_Death: Development and cell death domain; InterPro: IPR013989 The DCD (Development and Cell Death) domain is found in plant proteins involved in development and cell death. The DCD domain is an ~130 amino acid long stretch that contains several mostly invariable motifs. These include a FGLP and a LFL motif at the N terminus and a PAQV and a PLxE motif towards the C terminus of the domain. The DCD domain is present in proteins with different architectures. Some of these proteins contain additional recognizable motifs, like the KELCH repeats or the ParB domain []. Biological studies indicate a role of these proteins in phytohormone response, embryo development and programmed cell death by pathogens or ozone. The predicted secondary structure of the DCD domain is mostly composed of beta strands and confined by an alpha-helix at the N- and at the C terminus []. Proteins known to contain a DCD domain are listed below: Carrot B2 protein. Pea Gda-1 protein. Soybean N-rich protein (NRP).
Probab=20.52 E-value=67 Score=29.78 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=27.0
Q ss_pred cccccCceecCCcc----ccccccccccccccccCCCCCCHHHHHHHHHHHhccceE
Q psy11431 20 QVVFGERIRPSPYK----MNEDQTCTELCTKTYTPGNSDSEMKLALLKRGMDLNYYH 72 (590)
Q Consensus 20 evL~Gdr~~~S~y~----f~~d~~c~~lC~~~y~~~~~~~~~~~~~l~~~I~~~Y~~ 72 (590)
+...|+.-..|+|. |....+|.+|- + +.++.+|+++|+-
T Consensus 68 ~Af~~~~~~~~~fPAQVrf~i~~~C~PL~-----------E---~~fk~aI~~Ny~~ 110 (130)
T PF10539_consen 68 YAFSGSGSGESPFPAQVRFRIRWDCPPLP-----------E---SQFKPAIKDNYYD 110 (130)
T ss_pred hhhCCCCCCCcccceEEEEEEeeeeecCC-----------H---HHHHHHHHHhCCC
Confidence 34455555557776 88888887764 2 3577999999965
No 43
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=20.14 E-value=5.6e+02 Score=27.22 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCC
Q psy11431 239 NSLMIVLFLSGMVAMIILRTLHKDIARYNQIDS 271 (590)
Q Consensus 239 NS~~ivl~L~~~v~~Il~R~lr~D~~~Yn~~~~ 271 (590)
|-..-+++|.+.+.+.+.-+.-||...|.+-.|
T Consensus 42 ~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D 74 (303)
T COG1575 42 NLLVALLALIAAILLQILVNLANDYFDYKKGTD 74 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCC
Confidence 334445556666666667778888877766544
Done!