Query psy11431
Match_columns 590
No_of_seqs 131 out of 658
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 18:16:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11431.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11431hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 32.4 12 0.00041 30.4 0.6 55 232-292 8-67 (79)
2 2elu_A Zinc finger protein 406 31.3 19 0.00065 24.2 1.3 24 37-69 9-32 (37)
3 3cx5_C Cytochrome B-C1 complex 27.8 80 0.0027 33.1 6.1 66 518-583 73-145 (385)
4 2qjy_A Cytochrome B; cytochrom 27.8 61 0.0021 34.7 5.3 96 484-582 43-159 (445)
5 1pw4_A Glycerol-3-phosphate tr 26.3 72 0.0025 32.2 5.5 26 333-358 290-315 (451)
6 1vf5_A Cytochrome B6; photosyn 25.5 69 0.0024 30.8 4.7 66 518-583 77-149 (215)
7 4f4l_A ION transport protein; 22.8 1.4E+02 0.0046 25.3 5.7 82 302-389 4-90 (112)
8 3o7q_A L-fucose-proton symport 20.4 75 0.0026 32.0 4.2 25 336-360 300-324 (438)
9 1pp9_C Cytochrome B; cytochrom 19.3 1.2E+02 0.0042 31.6 5.5 66 518-583 74-144 (379)
10 3tlw_A GLR4197 protein, GLIC; 18.4 1.8E+02 0.006 29.0 6.4 42 305-347 202-243 (321)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=32.39 E-value=12 Score=30.38 Aligned_cols=55 Identities=20% Similarity=0.474 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhhhhhccCCCCcchhhcccceEEeccccCCC
Q psy11431 232 IHWFSILNSLMIVLFLSGMVAMIILRTL-----HKDIARYNQIDSGEDVQEEFGWKLVHGDVFRPP 292 (590)
Q Consensus 232 ihw~SIiNS~~ivl~L~~~v~~Il~R~l-----r~D~~~Yn~~~~~~~~~ee~GWKlvhgDVFR~P 292 (590)
.+...|+-..+..++|.|++.+++.|.+ ||..+|++++ +....|+.-....||+|
T Consensus 8 ~n~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE------~~~~~w~~~~NPlyk~~ 67 (79)
T 2knc_B 8 PDILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEE------RARAKWDTANNPLYKEA 67 (79)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHTTTTCCHHHHC
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhcccccCCCCCccCC
Confidence 3455666666666677777777776643 4555555432 23344654334456655
No 2
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=31.25 E-value=19 Score=24.16 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=16.6
Q ss_pred cccccccccccccCCCCCCHHHHHHHHHHHhcc
Q psy11431 37 DQTCTELCTKTYTPGNSDSEMKLALLKRGMDLN 69 (590)
Q Consensus 37 d~~c~~lC~~~y~~~~~~~~~~~~~l~~~I~~~ 69 (590)
.+-|+ .|+++|+ +++.+.+.|++.
T Consensus 9 kqhcr-fckkkys--------dvknlikhire~ 32 (37)
T 2elu_A 9 KQHCR-FCKKKYS--------DVKNLIKHIRDA 32 (37)
T ss_dssp CCEET-TTTEECS--------SHHHHHHHHHHT
T ss_pred HHHHH-HHHHHHH--------HHHHHHHHHHHh
Confidence 34564 4998876 567788888763
No 3
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=27.85 E-value=80 Score=33.10 Aligned_cols=66 Identities=9% Similarity=0.092 Sum_probs=49.4
Q ss_pred CcceeeceecccchhHHHHHHH-----hhheeeee--ecccccchhhHHHHHHHHHHHHHHHHhcchHHHHHH
Q psy11431 518 DYHWWWRSFITSGFTSIYLFIY-----CIHYFETR--LNISDASSVFLYFGYTLIMVFLFFIMTGMCEMLVSL 583 (590)
Q Consensus 518 dy~WwW~SF~~~gs~~~y~flY-----si~y~~~~--~~~~g~~~~~lyf~y~~l~~~~~~l~~GtiGflas~ 583 (590)
||+|-.|+.-.-|++.+++.+| .+||--.| .+....+.+++++.-|+..=...-|--|-.+|.++-
T Consensus 73 ~~GwliR~~H~~gAs~ffi~iylHi~Rglyygsy~~Pr~~~W~~Gv~l~ll~m~~aF~GYvLPwgQmS~Wgat 145 (385)
T 3cx5_C 73 HNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGAT 145 (385)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeeecHHHHHHHHHHHHHhhhccCCcchhHHHH
Confidence 7999999999999999988887 35554444 456667777777777777777777777777776553
No 4
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=27.85 E-value=61 Score=34.66 Aligned_cols=96 Identities=10% Similarity=0.237 Sum_probs=61.7
Q ss_pred hhhhHHHHHHH-HHHHHHHHHHHHHHhhhhccc-------------CCCcceeeceecccchhHHHHHHH-----hhhee
Q psy11431 484 TYYMFGFLFLV-FLILIITCSETTILLCYFHLC-------------AEDYHWWWRSFITSGFTSIYLFIY-----CIHYF 544 (590)
Q Consensus 484 ~yy~fgfL~~~-~~ilii~~a~vsIi~~Y~~L~-------------~Edy~WwW~SF~~~gs~~~y~flY-----si~y~ 544 (590)
..+-||.|+.. +++.+++-. .+..|+.=+ .-||+|-.|+.-.-|++.+++.+| .+||-
T Consensus 43 ~~w~fGsll~~~l~iQilTGi---fLam~Y~p~~~~Af~Sv~~I~rdV~~GwliR~~H~~gAs~ffi~iylHi~Rglyyg 119 (445)
T 2qjy_A 43 WMWIWGVVLAFCLVLQIVTGI---VLAMHYTPHVDLAFASVEHIMRNVNGGFMLRYLHANGASLFFIAVYLHIFRGLYYG 119 (445)
T ss_dssp GGGSHHHHHHHHHHHHHHHHH---HHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHHHH---HHHeeccCCcHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34558887764 444444432 223333322 237999999999999999988887 35554
Q ss_pred eee--ecccccchhhHHHHHHHHHHHHHHHHhcchHHHHH
Q psy11431 545 ETR--LNISDASSVFLYFGYTLIMVFLFFIMTGMCEMLVS 582 (590)
Q Consensus 545 ~~~--~~~~g~~~~~lyf~y~~l~~~~~~l~~GtiGflas 582 (590)
-.| .+....+.+++++.-|+..=..+-|--|-.+|.++
T Consensus 120 sY~~Pr~~~W~~Gv~l~ll~m~taF~GYvLPwgQmSfWga 159 (445)
T 2qjy_A 120 SYKAPREVTWIVGMLIYLAMMATAFMGYVLPWGQMSFWGA 159 (445)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHH
T ss_pred ccCCCccceeeehHHHHHHHHHHHHHheeccCCccchHHH
Confidence 344 45666777777777777666666666676666655
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=26.31 E-value=72 Score=32.21 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhcccchhhhhhhhhc
Q psy11431 333 MTCAMVMYVCLGTPAGYISARIYKSF 358 (590)
Q Consensus 333 ~t~~i~~y~~~~~i~Gy~s~~lyk~~ 358 (590)
.......+.+++++++..++++.+.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~g~l~~~~ 315 (451)
T 1pw4_A 290 SSWAYFLYEYAGIPGTLLCGWMSDKV 315 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555667777777788777765
No 6
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=25.46 E-value=69 Score=30.83 Aligned_cols=66 Identities=12% Similarity=0.005 Sum_probs=43.2
Q ss_pred CcceeeceecccchhHHHHHHH-----hhheeeee--ecccccchhhHHHHHHHHHHHHHHHHhcchHHHHHH
Q psy11431 518 DYHWWWRSFITSGFTSIYLFIY-----CIHYFETR--LNISDASSVFLYFGYTLIMVFLFFIMTGMCEMLVSL 583 (590)
Q Consensus 518 dy~WwW~SF~~~gs~~~y~flY-----si~y~~~~--~~~~g~~~~~lyf~y~~l~~~~~~l~~GtiGflas~ 583 (590)
||+|--|+.-.-|++.+++.+| .+||--.| .+....+.+++++.-|...=...-|-.|-.+|.++-
T Consensus 77 ~~GwliR~~H~~gAs~ffi~~ylHi~Rglyygsy~~p~~~~W~~Gv~l~~l~m~~aF~GYvLPwgqmS~wgat 149 (215)
T 1vf5_A 77 SFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWISGVILAVITVSFGVTGYSLPWDQVGYWAVK 149 (215)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSCSHHHHHHHHHHHHHHHHHHHHTTTTCBHHHHHHHH
T ss_pred ccchhhccchHHHHHHHHHHHHHHHHHHHHhhhcccCCCceeHhHHHHHHHHHHHHHcccccCCCccchhhHH
Confidence 7999999999999999988887 45554333 344555566666655555544444555555555543
No 7
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=22.78 E-value=1.4e+02 Score=25.31 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=39.8
Q ss_pred eccchHHHHHHHHHHHHHHhhc-----cCCCCchhHHHHHHHHHHHhhcccchhhhhhhhhcCCCchhhhhhhhhccchh
Q psy11431 302 LGSGIQILMMTMVTLAFACLGF-----LSPANRGALMTCAMVMYVCLGTPAGYISARIYKSFGGEKWKSNIILTSTLVPG 376 (590)
Q Consensus 302 vG~G~Qll~~~~~~l~~a~~g~-----~~p~~rg~l~t~~i~~y~~~~~i~Gy~s~~lyk~~~g~~W~~~~~lt~~l~P~ 376 (590)
.|.|-=.+++.++..++|++|+ ..|.+=+++..+++.+|.++.. .|+...-.+.......|.. ..++..
T Consensus 4 ~g~~nv~~ll~l~~~ifAi~G~~lFg~~~~~~F~~~~~s~ltLF~i~T~-e~W~~~~~~~~~~~~~~a~-----iyFi~f 77 (112)
T 4f4l_A 4 MGVGSVAALLTVVFYIAAVMATNLYGATFPEWFGDLSKSLYTLFQVMTL-ESWSMGIVRPVMNVHPNAW-----VFFIPF 77 (112)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTT-TTCCCCCHHHHTTTSTTTH-----HHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHCCCccccccCHHHHHHHHHHHHHc-cccHHHHHHHHHhcCcHHH-----HHHHHH
Confidence 4555555566666666777665 3344446777888888776542 3332221122222222321 122344
Q ss_pred HHHHHHHHHHHHH
Q psy11431 377 VVFCLFFVMNLIF 389 (590)
Q Consensus 377 ~~~~i~~~lN~i~ 389 (590)
++++.++++|+++
T Consensus 78 i~i~~fi~lNLfi 90 (112)
T 4f4l_A 78 IMLTTFTVLNLFI 90 (112)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 5555666666653
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=20.41 E-value=75 Score=31.98 Aligned_cols=25 Identities=4% Similarity=-0.043 Sum_probs=15.1
Q ss_pred HHHHHHHhhcccchhhhhhhhhcCC
Q psy11431 336 AMVMYVCLGTPAGYISARIYKSFGG 360 (590)
Q Consensus 336 ~i~~y~~~~~i~Gy~s~~lyk~~~g 360 (590)
....+.+++.++..+++++-+.++.
T Consensus 300 ~~~~~~~~~~~~~~~~g~l~~r~~~ 324 (438)
T 3o7q_A 300 YLTGTMVCFFIGRFTGTWLISRFAP 324 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344556666666777777666644
No 9
>1pp9_C Cytochrome B; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.32.1.1 f.21.1.2 PDB: 1bgy_C* 1be3_C* 1l0n_C* 1ntk_C* 1ntm_C* 1ntz_C* 1nu1_C* 1l0l_C* 1ppj_C* 1sqb_C* 1sqp_C* 1sqq_C* 1sqv_C* 1sqx_C* 2a06_C* 2fyu_C* 2ybb_C* 1qcr_C* 3l70_C* 2bcc_C* ...
Probab=19.31 E-value=1.2e+02 Score=31.58 Aligned_cols=66 Identities=14% Similarity=0.219 Sum_probs=45.0
Q ss_pred CcceeeceecccchhHHHHHHH-----hhheeeeeecccccchhhHHHHHHHHHHHHHHHHhcchHHHHHH
Q psy11431 518 DYHWWWRSFITSGFTSIYLFIY-----CIHYFETRLNISDASSVFLYFGYTLIMVFLFFIMTGMCEMLVSL 583 (590)
Q Consensus 518 dy~WwW~SF~~~gs~~~y~flY-----si~y~~~~~~~~g~~~~~lyf~y~~l~~~~~~l~~GtiGflas~ 583 (590)
||+|-.|+.-.-|++.+++.+| .+||--.|..-...+..++++.-|+..=...-|--|-.+|.++-
T Consensus 74 ~~GwliR~~H~~gAs~ffi~~ylHi~Rglyygsy~~~~~W~~Gv~l~ll~m~~aF~GYvLPwgQmS~Wgat 144 (379)
T 1pp9_C 74 NYGWIIRYMHANGASMFFICLYMHVGRGLYYGSYTFLETWNIGVILLLTVMATAFMGYVLPWGQMSFWGAT 144 (379)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCcceehhhHHHHHHHHHHHheeeeccCcchhHHHHH
Confidence 7999999999999999988887 35554333333555666666666666656666666666665543
No 10
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=18.38 E-value=1.8e+02 Score=29.04 Aligned_cols=42 Identities=12% Similarity=0.049 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHhhccc
Q psy11431 305 GIQILMMTMVTLAFACLGFLSPANRGALMTCAMVMYVCLGTPA 347 (590)
Q Consensus 305 G~Qll~~~~~~l~~a~~g~~~p~~rg~l~t~~i~~y~~~~~i~ 347 (590)
-+|+++=.+++++++.+++. |...|.-++..+........+.
T Consensus 202 ~~~~~iP~~li~~ls~~sF~-p~~~~~Rv~l~it~lL~~t~~~ 243 (321)
T 3tlw_A 202 IPNIILPMLFILFISWTAFW-STSYEANVTLVVSTLIAHIAFN 243 (321)
T ss_dssp HHHTHHHHHHHHHHHGGGGG-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHhheeec-cCCCCCcEEEEhhHHHHHHHHH
Confidence 36778888888899999999 8776665555554444443333
Done!