Query psy11431
Match_columns 590
No_of_seqs 131 out of 658
Neff 6.5
Searched_HMMs 13730
Date Fri Aug 16 18:16:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11431.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11431hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ppjc2 f.21.1.2 (C:15-260) Mi 27.2 34 0.0025 31.3 5.4 100 484-585 15-132 (246)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 22.8 1.2E+02 0.0085 27.7 8.8 28 335-362 289-316 (447)
3 d3cx5c2 f.21.1.2 (C:1-261) Mit 16.9 92 0.0067 28.4 6.1 100 484-585 28-147 (261)
4 d2iuba2 f.17.3.1 (A:286-349) M 11.7 54 0.004 23.1 2.2 25 403-427 5-29 (64)
5 d1q90b_ f.21.1.2 (B:) Cytochro 10.6 1.6E+02 0.012 25.8 5.6 100 484-585 29-148 (212)
6 d1pv7a_ f.38.1.2 (A:) Lactose 9.6 29 0.0021 31.4 -0.2 27 334-360 262-288 (417)
7 d1sdia_ a.198.1.1 (A:) Hypothe 7.2 57 0.0042 29.1 0.8 23 345-367 171-193 (213)
8 d1gy7a_ d.17.4.2 (A:) Nuclear 7.0 47 0.0035 26.4 0.1 13 277-290 105-117 (121)
9 d1oedb_ f.36.1.1 (B:) Acetylch 6.4 1.8E+02 0.013 25.2 4.0 51 306-356 6-56 (250)
10 d2f5ka1 b.34.13.3 (A:6-88) Mor 6.3 1.4E+02 0.0099 22.4 2.5 18 202-224 35-52 (83)
No 1
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=27.20 E-value=34 Score=31.26 Aligned_cols=100 Identities=18% Similarity=0.256 Sum_probs=57.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccCC-------------CcceeeceecccchhHHHHHHH-----hhheee
Q psy11431 484 TYYMFGFLFLVFLILIITCSETTILLCYFHLCAE-------------DYHWWWRSFITSGFTSIYLFIY-----CIHYFE 545 (590)
Q Consensus 484 ~yy~fgfL~~~~~ilii~~a~vsIi~~Y~~L~~E-------------dy~WwW~SF~~~gs~~~y~flY-----si~y~~ 545 (590)
.+|-+|.++...+++-+++. -.+..|+.-+.+ +++|-.|+.-.-|++.+++.+| .+||-.
T Consensus 15 ~~w~~G~ll~~~~~iqiiTG--i~L~~~Y~p~~~~A~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~lHm~r~~~~~s 92 (246)
T d1ppjc2 15 SWWNFGSLLGICLILQILTG--LFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYGS 92 (246)
T ss_dssp GGGSHHHHHHHHHHHHHHHH--HHHHTTCCCCTTTHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHcCChHHHHHHHHHhcCcccCchhhcchhHhHHHHHHHHHHHHHHHHHHhcC
Confidence 44667887764433333322 233344444333 6899999998888888877766 344433
Q ss_pred eeecccccchhhHHHHHHHHHHHHHHHHhcchHHHHHHHh
Q psy11431 546 TRLNISDASSVFLYFGYTLIMVFLFFIMTGMCEMLVSLVG 585 (590)
Q Consensus 546 ~~~~~~g~~~~~lyf~y~~l~~~~~~l~~GtiGflas~~~ 585 (590)
.|..-.-.+..++|+.-++..=...-|=.|-.+|.|+-+.
T Consensus 93 y~~~~~w~~G~~l~~l~m~~af~GY~Lpw~qms~wa~~V~ 132 (246)
T d1ppjc2 93 YTFLETWNIGVILLLTVMATAFMGYVLPWGQMSFWGATVI 132 (246)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHeeccCCCcchhHHHHHHH
Confidence 3332234445566665555555556666677777665443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=22.84 E-value=1.2e+02 Score=27.74 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=15.8
Q ss_pred HHHHHHHHhhcccchhhhhhhhhcCCCc
Q psy11431 335 CAMVMYVCLGTPAGYISARIYKSFGGEK 362 (590)
Q Consensus 335 ~~i~~y~~~~~i~Gy~s~~lyk~~~g~~ 362 (590)
.....+.+.+.++...++++.+.++.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 316 (447)
T d1pw4a_ 289 WAYFLYEYAGIPGTLLCGWMSDKVFRGN 316 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred hhhhcchhhhhhhhhhhhhhhhhccccc
Confidence 3344455566666666666666555444
No 3
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.94 E-value=92 Score=28.43 Aligned_cols=100 Identities=12% Similarity=0.150 Sum_probs=63.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccCC-------------CcceeeceecccchhHHHHHHHh-----hheee
Q psy11431 484 TYYMFGFLFLVFLILIITCSETTILLCYFHLCAE-------------DYHWWWRSFITSGFTSIYLFIYC-----IHYFE 545 (590)
Q Consensus 484 ~yy~fgfL~~~~~ilii~~a~vsIi~~Y~~L~~E-------------dy~WwW~SF~~~gs~~~y~flYs-----i~y~~ 545 (590)
..|-+|.++...+++-+++. -.+..|++-..+ +++|-.|+.-.-|++.+++.+|- +||--
T Consensus 28 ~~w~~G~ll~~~~~iqiiTG--i~L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~gs 105 (261)
T d3cx5c2 28 YWWNMGSLLGLCLVIQIVTG--IFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGS 105 (261)
T ss_dssp GGGGHHHHHHHHHHHHHHHH--HHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHheecCChHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHHHHHHHHhcc
Confidence 34557887765443333322 133344444332 58999999998888888877762 33322
Q ss_pred ee--ecccccchhhHHHHHHHHHHHHHHHHhcchHHHHHHHh
Q psy11431 546 TR--LNISDASSVFLYFGYTLIMVFLFFIMTGMCEMLVSLVG 585 (590)
Q Consensus 546 ~~--~~~~g~~~~~lyf~y~~l~~~~~~l~~GtiGflas~~~ 585 (590)
.| .+....+..++++.-++..=...-|-.|-.+|.|+-+.
T Consensus 106 y~~pre~~W~~Gv~l~~l~~~~af~GY~Lpw~q~s~w~~~Vi 147 (261)
T d3cx5c2 106 YRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVI 147 (261)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHHH
T ss_pred ccCccchhHHhhHHHHHHHHHHHHhhhhcCCCcchhhHHHHH
Confidence 22 23445667777777777777777888888888776554
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=11.69 E-value=54 Score=23.10 Aligned_cols=25 Identities=28% Similarity=0.695 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhcc
Q psy11431 403 LLALVSLWVWVSMPLTFIGSFFGFR 427 (590)
Q Consensus 403 i~~l~~lw~~vs~PL~~lG~~~g~~ 427 (590)
.+..+..+-.+-+|++++.|++|.+
T Consensus 5 ~mk~lT~it~iflP~t~i~gifGMN 29 (64)
T d2iuba2 5 VMKVLTIIATIFMPLTFIAGIYGMN 29 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccC
Confidence 3455666677888999999999965
No 5
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=10.58 E-value=1.6e+02 Score=25.76 Aligned_cols=100 Identities=9% Similarity=0.143 Sum_probs=59.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccCC-------------CcceeeceecccchhHHHHHHHh----hhee-e
Q psy11431 484 TYYMFGFLFLVFLILIITCSETTILLCYFHLCAE-------------DYHWWWRSFITSGFTSIYLFIYC----IHYF-E 545 (590)
Q Consensus 484 ~yy~fgfL~~~~~ilii~~a~vsIi~~Y~~L~~E-------------dy~WwW~SF~~~gs~~~y~flYs----i~y~-~ 545 (590)
..|.+|.++...+++-+++. -.+..|++-..+ +++|--|+.-.-|+..+++.+|- .+|+ .
T Consensus 29 ~~~~~Gsll~~~~~iqi~TG--i~L~~~Y~p~~~~A~~Sv~~I~~~v~~G~liR~lH~~gAs~~~~~~~lHm~r~~~~gs 106 (212)
T d1q90b_ 29 IFYCIGGITFTCFLVQVATG--FAMTFYYRPTVAEAFASVQYIMTDVNFGWLIRSIHRWSASMMVLMMVLHVFRVYLTGG 106 (212)
T ss_dssp SGGGHHHHHHHHHHHHHHHH--HHHTTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHhhhCCCchhhcccccccchHHHHHHHHHHHHHHHcCc
Confidence 45667877765444333332 133344444333 68999999988888888777662 2221 1
Q ss_pred ee--ecccccchhhHHHHHHHHHHHHHHHHhcchHHHHHHHh
Q psy11431 546 TR--LNISDASSVFLYFGYTLIMVFLFFIMTGMCEMLVSLVG 585 (590)
Q Consensus 546 ~~--~~~~g~~~~~lyf~y~~l~~~~~~l~~GtiGflas~~~ 585 (590)
.| -+....+..++++.-+...=...-|-.|-.+|.|+-+.
T Consensus 107 yk~pre~~W~~Gv~l~~l~m~~aftGY~Lpw~q~sywa~~V~ 148 (212)
T d1q90b_ 107 FKRPRELTWVTGVIMAVCTVSFGVTGYSLPWDQVGYWAVKIV 148 (212)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHH
T ss_pred ccCcccceehHhHHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 12 23445566666666666665666677777777766554
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=9.58 E-value=29 Score=31.37 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhcccchhhhhhhhhcCC
Q psy11431 334 TCAMVMYVCLGTPAGYISARIYKSFGG 360 (590)
Q Consensus 334 t~~i~~y~~~~~i~Gy~s~~lyk~~~g 360 (590)
........+.+.+++..++++-+..+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~r~~~ 288 (417)
T d1pv7a_ 262 GYVTTMGELLNASIMFFAPLIINRIGG 288 (417)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHCH
T ss_pred cccccccccccccchhhhhhhhccccc
Confidence 334445556667777777777765543
No 7
>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli [TaxId: 562]}
Probab=7.17 E-value=57 Score=29.07 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=19.4
Q ss_pred cccchhhhhhhhhcCCCchhhhh
Q psy11431 345 TPAGYISARIYKSFGGEKWKSNI 367 (590)
Q Consensus 345 ~i~Gy~s~~lyk~~~g~~W~~~~ 367 (590)
.+||-=|+.++++.||++|+...
T Consensus 171 LLAGIRaavLWrQ~GG~Rwqllf 193 (213)
T d1sdia_ 171 LLAGIRAAVLWHQVGGGRLQLMF 193 (213)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhHHh
Confidence 34788899999999999999643
No 8
>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.04 E-value=47 Score=26.40 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=10.5
Q ss_pred hcccceEEeccccC
Q psy11431 277 EEFGWKLVHGDVFR 290 (590)
Q Consensus 277 ee~GWKlvhgDVFR 290 (590)
++.+|+ |+.|+||
T Consensus 105 ~~~~y~-I~nD~FR 117 (121)
T d1gy7a_ 105 DGNSYY-VFNDIFR 117 (121)
T ss_dssp ETTEEE-EEEEEEE
T ss_pred eCCEEE-EEEEEEE
Confidence 346898 7899998
No 9
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=6.43 E-value=1.8e+02 Score=25.17 Aligned_cols=51 Identities=12% Similarity=0.225 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccchhhhhhhh
Q psy11431 306 IQILMMTMVTLAFACLGFLSPANRGALMTCAMVMYVCLGTPAGYISARIYK 356 (590)
Q Consensus 306 ~Qll~~~~~~l~~a~~g~~~p~~rg~l~t~~i~~y~~~~~i~Gy~s~~lyk 356 (590)
+++++=.+++.+++.+|++-|.++|.=++..+-......++.-.++..+=+
T Consensus 6 ~~~~~P~~~i~~l~~~~f~~p~~~~er~~l~it~lL~~~~~~~~v~~~~P~ 56 (250)
T d1oedb_ 6 VYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPE 56 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeHHHHHHHHHHHHHHHheecCCCCCcEEeeHHHHHHHHHHHHHHHHhCCC
Confidence 456666777788888999888888888887777777777777777776544
No 10
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.35 E-value=1.4e+02 Score=22.36 Aligned_cols=18 Identities=28% Similarity=0.767 Sum_probs=15.6
Q ss_pred EEEEEEEEeCCCccccchhhhhc
Q psy11431 202 YTYSIMFQKNNTVKWSSRWDYIL 224 (590)
Q Consensus 202 fTYSV~w~~s~~~~w~~Rwd~yl 224 (590)
..|=|+| .-|++|||.-.
T Consensus 35 ~~Y~VHy-----~GWn~~~DeWv 52 (83)
T d2f5ka1 35 VKYFIHY-----SGWNKNWDEWV 52 (83)
T ss_dssp EEEEEEE-----TTSCGGGCEEE
T ss_pred eEEEEEe-----cccCCcccccc
Confidence 4799999 68999999886
Done!