RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11431
(590 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 0.002
Identities = 55/340 (16%), Positives = 101/340 (29%), Gaps = 130/340 (38%)
Query: 39 TCTELCTKTYTPGNSDSEMKLALLKRGMDLNYYHHWIV-------DNMPVTWCYLTNDGQ 91
T L +TPG S +K L + D +W +
Sbjct: 252 TAKLLG---FTPGELRSYLK-GATGHSQGL------VTAVAIAETD----SWESFFVSVR 297
Query: 92 KYCNTGFPMGCYKHAYQDFCSSMI-----------GEGSPNDMYYV----FNHVDIRITY 136
K F +G Y+ + ++ + EG P+ M + V +
Sbjct: 298 KAITVLFFIGV--RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 137 ---HSGEDEEWGSSFQGNGGRI-IAVKITPRS--ISHIEEPGKPPVCSSAQG---ELQPM 187
H + ++ I++ ++ +S G PP S G L+
Sbjct: 356 TNSHLPAGK-----------QVEISLVNGAKNLVVS-----G-PP--QSLYGLNLTLRKA 396
Query: 188 AVPKGKLDKPLQIKYTYSIMFQKNNTVKWSSRWDYILESTS--HTNIHWFSILNSLMIVL 245
P G LD Q + +S ++ +K+S+R+ L S H++
Sbjct: 397 KAPSG-LD---QSRIPFS---ER--KLKFSNRF---LPVASPFHSH-------------- 430
Query: 246 FLSGMVAMIILRTLHKD---------IARYNQIDSGEDVQEEFG---------------- 280
L +I + + I Y+ D G D++ G
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD-GSDLRVLSGSISERIVDCIIRLPVK 489
Query: 281 W-KLVHGD-----VFRP---PRKGMLLSVLL-GSGIQILM 310
W F P G+L G+G+++++
Sbjct: 490 WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIV 529
Score = 35.4 bits (81), Expect = 0.070
Identities = 42/305 (13%), Positives = 84/305 (27%), Gaps = 98/305 (32%)
Query: 246 FLSGMVAMI-----------ILRTLHKDIARYNQIDSGEDVQEEFGWKLVHGDVFRPPRK 294
FL G V+ + +L + G D+ H
Sbjct: 64 FL-GYVSSLVEPSKVGQFDQVLNLCLTEFEN--CYLEGNDI---------H--------- 102
Query: 295 GMLLSVLLGSGIQILMMTMVTL-----AFACLG-FLSPANRGALMTCAMVMYVCLGTPAG 348
L + LL L+ T + A + AL G
Sbjct: 103 -ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV---------GEG 152
Query: 349 YISARIYKSFGG----EKW--------------KSNIILTS-----TLVPGVVFCLFF-- 383
+A++ FGG + + ++I S L+ +
Sbjct: 153 --NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 384 -VMNLIFWAKDSSAAVPFSTLLALVSLWVWVSMPLTFIGSFFGFRKRAIEHPVRTNQIPR 442
+N++ W ++ S P L + +S PL + + A ++
Sbjct: 211 QGLNILEWLENPSNT-PDKDYLLSIP----ISCPLIGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 443 QIPEQSVYTQAIPGVIMGGVLPFGCIFIQLYFILSSIWSSQTYYMFGFLFLVFLILI-IT 501
+ + ++Q G++ + I + W S +++ + L I +
Sbjct: 266 YLKGATGHSQ---GLVTA-------VAIA----ETDSWES--FFVSVRKAITVLFFIGVR 309
Query: 502 CSETT 506
C E
Sbjct: 310 CYEAY 314
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.008
Identities = 54/360 (15%), Positives = 98/360 (27%), Gaps = 101/360 (28%)
Query: 117 EGSPNDMYYVFNHVDIRITYHSGEDEEWGSSFQGNGGRIIAVKITPRSISHIEEPGKPPV 176
+M F +RI Y ++ S I + P ++ + + +
Sbjct: 72 LSKQEEMVQKFVEEVLRINY------KFLMS------PIKTEQRQPSMMTRMYIEQRDRL 119
Query: 177 CSSAQGELQPMAVPKGKLDKPLQIKYTYSIMFQKNNTV-------KWS-----SRWDYIL 224
+ Q V + + L+ + + KN + K Y +
Sbjct: 120 YNDNQ-VFAKYNVSRLQPYLKLR-QALLELRPAKNVLIDGVLGSGKTWVALDVCL-SYKV 176
Query: 225 ESTSHTNIHWFSILNSLMIVLFLSGMVAMIILRTLHKDIAR---------YNQIDSGEDV 275
+ I W ++ N S + +L+ L I N +
Sbjct: 177 QCKMDFKIFWLNLKNC------NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 276 QEEFGWKLVHGDVFRPPRKGMLLSVL-----------LGSGIQILMMT------------ 312
Q E L P + LL VL +IL+ T
Sbjct: 231 QAELRRLLKS-----KPYENCLL-VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 313 ---MVTLAFACLGFLSPANRGALMTCAMVMY------VCLGTP--AGYISARI------- 354
++L + + L+ V P I+ I
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 355 --YKSFGGEKWKSNIILTS--TLVPGVVFCLFFVMNLIFWAKDSSAAVPFSTLLALVSLW 410
+K +K + II +S L P +F ++ +F SA +P L +W
Sbjct: 345 DNWKHVNCDK-LTTIIESSLNVLEPAEYRKMFDRLS-VF---PPSAHIPTIL---LSLIW 396
Score = 37.1 bits (85), Expect = 0.018
Identities = 29/213 (13%), Positives = 55/213 (25%), Gaps = 65/213 (30%)
Query: 346 PAGYISARIY--KSFGGEKWKSNIILT-STLVPGVVFCLFFVMNLIFWAKDSSAAVPFST 402
PA + I G K+ + + V C IFW + P +
Sbjct: 149 PAKNVL--IDGVLGSG----KT--WVALDVCLSYKVQCKMD--FKIFWLNLKNCNSPETV 198
Query: 403 LLALVSLWVWVSMPLTFIGSFFGFRKRAIEHPVRTNQI---PRQIPEQSVYTQAIPGVIM 459
L L L + T + +R + I R++ + Y
Sbjct: 199 LEMLQKLLYQIDPNWTSRSD------HSSNIKLRIHSIQAELRRLLKSKPYENC------ 246
Query: 460 GGVLPFGCIFIQLYFILSSIWSSQTYYMFGFLFLVFL---ILIIT--CSETTIL--LCYF 512
+L ++ +++ + F IL+ T T L
Sbjct: 247 -------------LLVLLNVQNAKAWNAFNL------SCKILLTTRFKQVTDFLSAATTT 287
Query: 513 HLCAEDYHWWWRSFITSGFT---SIYLFIYCIH 542
H+ + + T L + +
Sbjct: 288 HISLDHHSM--------TLTPDEVKSLLLKYLD 312
Score = 36.8 bits (84), Expect = 0.024
Identities = 33/229 (14%), Positives = 61/229 (26%), Gaps = 88/229 (38%)
Query: 59 LALLKRGMDLNYYHHWIVDNMPVTWCYLTNDGQKYCNTGFPMGCYKHAYQDFCSSMIGEG 118
L L + + H IVD Y N + + +
Sbjct: 433 LELKVKLENEYALHRSIVD------HY--NIPKTFDSDDLIP------------------ 466
Query: 119 SPNDMYYVFNHVDIRITYH---SGEDEEWGS------SFQGNGGRIIAVKITPRSISHIE 169
D Y+ ++H I +H E F R + KI S
Sbjct: 467 PYLDQYF-YSH----IGHHLKNIEHPERMTLFRMVFLDF-----RFLEQKIRHDST---- 512
Query: 170 EPGKPPVCSSAQGELQPMAVPKGKLDKPLQIKYTYSIMFQKNNTVKWSSRWDYILESTSH 229
L+ Q+K+ Y YI ++
Sbjct: 513 ----------------AWNASGSILNTLQQLKF-YK---------------PYICDNDPK 540
Query: 230 TNIHWFSILNSLMIVLFLSGMVAMIILRTLHKDIARYNQIDSGEDVQEE 278
++N+++ FL + ++ + + D+ R + E + EE
Sbjct: 541 YE----RLVNAILD--FLPK-IEENLICSKYTDLLRIALMAEDEAIFEE 582
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.24
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 5/28 (17%)
Query: 36 EDQTCTELCT--KTYTPGNSDSEMKLAL 61
E Q +L K Y DS LA+
Sbjct: 18 EKQALKKLQASLKLYAD---DSAPALAI 42
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 33.1 bits (76), Expect = 0.34
Identities = 28/218 (12%), Positives = 72/218 (33%), Gaps = 34/218 (15%)
Query: 222 YILESTSHTNIHWFSILNSLMIVLFLSGMVAMIILRTLHKDIARYNQIDSGEDVQEEFGW 281
Y++ + +IH L + +L S + +++ + D+A + D
Sbjct: 691 YVVYRIA-LSIHLEIFLGLWIAILNRSLNIELVVFIAIFADVA---TLAIAYD------- 739
Query: 282 KLVHGDVFRPPRK---GMLLSVLLGSGIQILMMTMVTLAFACLGFLS---PANRGALMTC 335
+ + P K L + + G+ + + T +T+ + N G +
Sbjct: 740 ---NAPYSQTPVKWNLPKLWGMSVLLGVVLAVGTWITVTTMYAQGENGGIVQNFGNMDEV 796
Query: 336 AMVMYVCLGTPAGYISARIYKSFGGEKWKS--NIILTSTLVPGVVFCLFFVMNLIFWAKD 393
+ + R F W S + L+ + + F + F
Sbjct: 797 LFLQISLTENWLIF-ITRANGPF----WSSIPSWQLSGAIFLVDILATCFTIWGWF---- 847
Query: 394 SSAAVPFSTLLALVSLWVWVSMPLTFIGSFFGFRKRAI 431
++++A+V +W++ +G + + ++
Sbjct: 848 ---EHSDTSIVAVVRIWIFSFGIFCIMGGVYYILQDSV 882
>1zoy_C Large cytochrome binding protein, FAD-binding protein; succinate,
ubiquinone oxidoreductase, mitochondrial respiratory
complex II; HET: FAD HEM EPH UQ1; 2.40A {Sus scrofa}
PDB: 1zp0_C* 3abv_C* 3ae1_C* 3ae2_C* 3ae3_C* 3ae4_C*
3ae5_C* 3ae6_C* 3ae7_C* 3ae8_C* 3ae9_C* 3aea_C* 3aeb_C*
3aec_C* 3aed_C* 3aee_C* 3aef_C* 3aeg_C* 3sfd_C* 3sfe_C*
Length = 140
Score = 29.9 bits (67), Expect = 1.2
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 1/66 (1%)
Query: 458 IMGGVLPFGCIFIQLYFILSSIWSSQTYYMFGFLFLVFLILIITCSETTILLCYFHLCAE 517
G L G L +L + +++ + LI T + +H
Sbjct: 44 GTGIALSAGVSLFGLSALLLP-GNFESHLELVKSLCLGPTLIYTAKFGIVFPLMYHTWNG 102
Query: 518 DYHWWW 523
H W
Sbjct: 103 IRHLIW 108
>3gwj_A Arylphorin; mono-glucosylated N-glycan, stability, glycosyla
glycoprotein, secreted, storage protein, oxygen
transport; HET: NAG BMA MAN GLC; 2.43A {Antheraea
pernyi}
Length = 674
Score = 31.1 bits (70), Expect = 1.3
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 47 TYTPGNSDSEMKLALLKRGMDLNYYH-HWIVDNMPVTW 83
+ + E +LA + LN Y+ + + +P W
Sbjct: 191 SNAITYYNEEQRLAYFTEDIGLNAYYFFFHIH-LPFWW 227
>3vr8_C Cytochrome B-large subunit; membrane protein, reductase,
mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH;
2.81A {Ascaris suum} PDB: 3vrb_C*
Length = 188
Score = 29.4 bits (65), Expect = 2.1
Identities = 8/65 (12%), Positives = 16/65 (24%)
Query: 459 MGGVLPFGCIFIQLYFILSSIWSSQTYYMFGFLFLVFLILIITCSETTILLCYFHLCAED 518
+ G G + I T+ F + +++ T FH
Sbjct: 77 VTGCAMAGTLLIGGVGFSVLPLDFTTFVEFIRGLGIPWVILDTFKFIIAFPIAFHTLNGI 136
Query: 519 YHWWW 523
+
Sbjct: 137 RFIGF 141
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease,
membrane protein; HET: PA6 PQE; 2.20A {Haemophilus
influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Length = 196
Score = 29.2 bits (66), Expect = 2.8
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 484 TYYMFGFLFLVFLILIITCSETTILLCYFHLCAEDYHWWWRSFITSGF 531
T + L+++ + + + L ++ E WR +I+
Sbjct: 12 TLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWR-YISHTL 58
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta-
propeller; HET: LBT CIT; 1.70A {Micromonospora
viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB:
1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A
1eus_A*
Length = 601
Score = 29.7 bits (65), Expect = 3.5
Identities = 12/177 (6%), Positives = 39/177 (22%), Gaps = 4/177 (2%)
Query: 61 LLKRGMDLNYYHHWIVDNMPVTWCYLTNDGQKYCNTGFPMGCYKHAYQDFCSSMIGEGSP 120
L + G + Y + + + + D +
Sbjct: 338 LYEPGTGIRYANFNLAWLGGICAPFTIPDVALEPGQQVTVPVAVTNQSGIAVPKPSLQLD 397
Query: 121 NDMYYVFNHVDIRITYHSGEDEEWGSSFQGNGGRIIAVKITPRSISHIEEPGKPPVCSSA 180
+ + + + G ++ + +
Sbjct: 398 ASPDWQVQGSVEPLMPGRQAKGQVTITVP-AGTTPGRYRVGATLRTSAGNASTTFTVTVG 456
Query: 181 QGELQPMAVPKGKLDKPLQIKYTYSIMFQKNNTVKWSSRWDYILESTSHTNIHWFSI 237
+ M++ ++ + S + N + W + W + + H S+
Sbjct: 457 LLDQARMSIADVDSEETAREDGRASNVIDGNPSTFWHTEWS---RADAPGYPHRISL 510
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats,
LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus}
PDB: 2xq2_B 2kpe_A
Length = 593
Score = 29.4 bits (66), Expect = 3.9
Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 5/121 (4%)
Query: 453 AIPGVIMGGVLPFGCIFIQLYFILSSIWSSQTYYMFGFLFLVFLILIITCSETTILLCYF 512
AI GV+ +PF + + + Q Y F +V ++ S
Sbjct: 456 AIIGVVAS--IPFALFLKFMPLSMPFMD--QMLYTLLFTMVVIAFTSLSTSINDDDPKGI 511
Query: 513 HLCAEDYHWWWRSFITSGFTSIYLF-IYCIHYFETRLNISDASSVFLYFGYTLIMVFLFF 571
+ + + I + I L +Y + + I+ + I++ +
Sbjct: 512 SVTSSMFVTDRSFNIAAYGIMIVLAVLYTLFWVNADAEITLIIFGVMAGVIGTILLISYG 571
Query: 572 I 572
I
Sbjct: 572 I 572
>3arc_C Photosystem II core light harvesting protein CP43; PSII,
membrane-protein complex, transmembrane alpha-helix, E
transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD
LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus
vulcanus} PDB: 3bz1_C* 1s5l_C* 1w5c_C* 2axt_C* 3bz2_C*
3prq_C* 3kzi_C* 3prr_C* 3a0b_C* 3a0h_C* 1izl_C*
Length = 455
Score = 28.6 bits (63), Expect = 6.8
Identities = 11/60 (18%), Positives = 23/60 (38%)
Query: 435 VRTNQIPRQIPEQSVYTQAIPGVIMGGVLPFGCIFIQLYFILSSIWSSQTYYMFGFLFLV 494
++ + P Q + Y P + V + F+ W + ++++ F FLV
Sbjct: 362 IKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNFVSPRSWLATSHFVLAFFFLV 421
>2h88_C Succinate dehydrogenase cytochrome B, large subun; complex II,
membrane protein, heme protein, iron sulfur PROT
cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL;
1.74A {Gallus gallus} PDB: 2h89_C* 1yq3_C* 1yq4_C*
2fbw_C* 2wqy_C*
Length = 140
Score = 27.6 bits (61), Expect = 7.2
Identities = 11/66 (16%), Positives = 16/66 (24%), Gaps = 1/66 (1%)
Query: 458 IMGGVLPFGCIFIQLYFILSSIWSSQTYYMFGFLFLVFLILIITCSETTILLCYFHLCAE 517
G L G L +L Y + LI + + +H
Sbjct: 44 GTGVALSLGVSLFSLAALLLP-EQFPHYVAVVKSLSLSPALIYSAKFALVFPLSYHTWNG 102
Query: 518 DYHWWW 523
H W
Sbjct: 103 IRHLVW 108
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.140 0.453
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,161,212
Number of extensions: 543409
Number of successful extensions: 1249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1242
Number of HSP's successfully gapped: 40
Length of query: 590
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 491
Effective length of database: 3,937,614
Effective search space: 1933368474
Effective search space used: 1933368474
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.1 bits)