RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11431
         (590 letters)



>d1idsa2 d.44.1.1 (A:86-199) Fe superoxide dismutase (FeSOD)
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 114

 Score = 26.5 bits (58), Expect = 3.8
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 344 GTPAGYISARIYKSFGG-EKWKSNIILTSTLVPGVVFCLFFV 384
             P G ++A I  +FG  +K+++     +T V G  +     
Sbjct: 4   DKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGW 45


>d1jr9a2 d.44.1.1 (A:92-202) Mn superoxide dismutase (MnSOD)
           {Bacillus halodenitrificans [TaxId: 1482]}
          Length = 111

 Score = 26.5 bits (58), Expect = 4.4
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 344 GTPAGYISARIYKSFGG-EKWKSNIILTSTLVPGVVFCLFFVMNLIFW 390
           G P G ++ +I   +G  EK++      +    G  +    V N    
Sbjct: 4   GKPTGEVADKINDKYGSFEKFQEEFAAAAAGRFGSGWAWLVVNNGEIE 51


>d1ix9a2 d.44.1.1 (A:91-205) Mn superoxide dismutase (MnSOD)
           {Escherichia coli [TaxId: 562]}
          Length = 115

 Score = 26.2 bits (57), Expect = 5.0
 Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 344 GTPAGYISARIYKSFGG-EKWKSNIILTSTLVPGVVFCLFFVMN 386
            T  G + A I + FG  + +K+     +    G  +    +  
Sbjct: 2   TTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKG 45


>d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan
           maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]}
          Length = 357

 Score = 27.6 bits (60), Expect = 5.0
 Identities = 12/91 (13%), Positives = 26/91 (28%), Gaps = 5/91 (5%)

Query: 62  LKRGMDLNYYHHWIVDNMPVTWCYLTNDGQKYCNTGFPMGCYKHAYQDFCSSMIGEGSPN 121
           +    DLN  H  +           TN   +Y   GF     +    +  +S + + + N
Sbjct: 157 IGGDADLNTGHPQVYGMF---RDEFTNLRSQYGAGGFRFDFVRGYAPERVNSWMTDSADN 213

Query: 122 --DMYYVFNHVDIRITYHSGEDEEWGSSFQG 150
              +  ++        +       W    + 
Sbjct: 214 SFCVGELWKGPSEYPNWDWRNTASWQQIIKD 244


>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
          Length = 180

 Score = 26.6 bits (58), Expect = 6.9
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 484 TYYMFGFLFLVFLILIITCSETTILLCYFHLCAEDYHWWWRSFITSGFTSIYLFIYCIH 542
           T+ M     +VF+ + I   +  +L   +         +WR + T       L     +
Sbjct: 7   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWR-YFTHALMHFSLMHILFN 64


>d1my6a2 d.44.1.1 (A:89-198) Fe superoxide dismutase (FeSOD)
           {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 110

 Score = 25.7 bits (56), Expect = 7.8
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 344 GTPAGYISARIYKSFGG-EKWKSNIILTSTLVPGVVFCLFFV----MNLIFWAKDSSAAV 398
           G P G ++ARI  +FG  +++K+     +    G  +    +    + +   A   +  V
Sbjct: 4   GVPTGDVAARINSAFGSYDEFKAQFKNAAATQFGSGWAWLVLEAGTLKVTKTANAENPLV 63

Query: 399 PFSTLLALVSLW 410
                L  + +W
Sbjct: 64  HGQVPLLTIDVW 75


>d1p7ga2 d.44.1.1 (A:104-222) Fe superoxide dismutase (FeSOD)
           {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
          Length = 119

 Score = 25.8 bits (56), Expect = 9.1
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 344 GTPAGYISARIYKSFGG-EKWKSNIILTSTLVPGVVFCLF 382
           G P G I+  I K FG  EK+K      +  V GV + + 
Sbjct: 2   GKPGGKIADLINKFFGSFEKFKEEFSQAAKNVEGVGWAIL 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.453 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,352,179
Number of extensions: 110539
Number of successful extensions: 411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 408
Number of HSP's successfully gapped: 41
Length of query: 590
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 500
Effective length of database: 1,171,896
Effective search space: 585948000
Effective search space used: 585948000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.8 bits)